BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023840
(276 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WQK|A Chain A, Crystal Structure Of Sure Protein From Aquifex Aeolicus
pdb|2WQK|B Chain B, Crystal Structure Of Sure Protein From Aquifex Aeolicus
Length = 251
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 108/197 (54%), Gaps = 13/197 (6%)
Query: 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF 74
PT ++ NDDG +PG+ +L L S R V V APD S V HS+T+ P+ R D
Sbjct: 2 PTFLLVNDDGYFSPGINALREALKSLGR--VVVVAPDRNLSGVGHSLTFTEPLKMRKIDT 59
Query: 75 DGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFF 134
D T + GTPADC LG L PDLV+SGIN G N G + YSGTV+GA E
Sbjct: 60 DFYTV--IDGTPADCVHLGYRVILEEKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRI 117
Query: 135 HGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPT-DI 193
G+PS++ S G+ N+ + A+ C+ I+ +L N+ PE +LN+++P
Sbjct: 118 LGIPSIAFS---AFGRENIM-FEEIAKVCVDIVKKVL----NEGIPEDTYLNVNIPNLRY 169
Query: 194 PNNKGYKLTKQGTSIFK 210
KG K+T+QG +K
Sbjct: 170 EEIKGIKVTRQGKRAYK 186
>pdb|2E69|A Chain A, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Sulfate
pdb|2E69|B Chain B, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Sulfate
pdb|2E69|C Chain C, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Sulfate
pdb|2E69|D Chain D, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Sulfate
pdb|2E6B|A Chain A, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Magnesium And Tungstate
pdb|2E6B|B Chain B, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Magnesium And Tungstate
pdb|2E6B|C Chain C, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Magnesium And Tungstate
pdb|2E6B|D Chain D, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Magnesium And Tungstate
pdb|2E6C|A Chain A, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 Cocrystallized With
Manganese And Amp
pdb|2E6C|B Chain B, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 Cocrystallized With
Manganese And Amp
pdb|2E6C|C Chain C, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 Cocrystallized With
Manganese And Amp
pdb|2E6C|D Chain D, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 Cocrystallized With
Manganese And Amp
pdb|2E6E|A Chain A, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8
pdb|2E6E|B Chain B, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8
pdb|2E6E|C Chain C, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8
pdb|2E6E|D Chain D, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8
pdb|2E6G|A Chain A, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Phosphate
pdb|2E6G|B Chain B, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Phosphate
pdb|2E6G|C Chain C, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Phosphate
pdb|2E6G|D Chain D, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Phosphate
pdb|2E6G|E Chain E, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Phosphate
pdb|2E6G|F Chain F, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Phosphate
pdb|2E6G|G Chain G, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Phosphate
pdb|2E6G|H Chain H, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Phosphate
pdb|2E6G|I Chain I, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Phosphate
pdb|2E6G|J Chain J, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Phosphate
pdb|2E6G|K Chain K, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Phosphate
pdb|2E6G|L Chain L, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Phosphate
Length = 244
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/131 (45%), Positives = 82/131 (62%), Gaps = 9/131 (6%)
Query: 17 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISA----RPA 72
I+VTNDDGI +PGL +L ++ V V APD+E+SA H+IT HP+ A P
Sbjct: 3 ILVTNDDGIYSPGLWALAEA--ASQFGEVFVAAPDTEQSAAGHAITIAHPVRAYPHPSPL 60
Query: 73 DFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREA 132
AY V GTPADC +LG+ LF V DLV+SG+N+GSN G+ + +SGTVA A++
Sbjct: 61 HAPHFPAYRVRGTPADCVALGLH--LFGPV-DLVLSGVNLGSNLGHEIWHSGTVAAAKQG 117
Query: 133 FFHGVPSVSIS 143
+ G+ + + S
Sbjct: 118 YLFGLSAAAFS 128
>pdb|3TY2|A Chain A, Structure Of A 5'-Nucleotidase (Sure) From Coxiella
Burnetii
pdb|3TY2|B Chain B, Structure Of A 5'-Nucleotidase (Sure) From Coxiella
Burnetii
Length = 261
Score = 101 bits (251), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 106/195 (54%), Gaps = 17/195 (8%)
Query: 14 KPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPAD 73
K ++++NDDG+ A GL L + L V V APD +S S+S+T P+ + +
Sbjct: 11 KLRLLLSNDDGVYAKGLAILAKTLADLGE--VDVVAPDRNRSGASNSLTLNAPLHIKNLE 68
Query: 74 FDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAF 133
++ V GTP DC L ++ L P PD V++GIN G N G V YSGTVA A E
Sbjct: 69 NGXIS---VEGTPTDCVHLAITGVL-PEXPDXVVAGINAGPNLGDDVWYSGTVAAAXEGR 124
Query: 134 FHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDI 193
F G+P++++S +GG+ Y AA+ ++ ++ I P LNI++P D+
Sbjct: 125 FLGLPALAVS---LGGEL-FRYYETAAK----VVYQLIQRIEKDPLPPSTILNINVP-DL 175
Query: 194 PNN--KGYKLTKQGT 206
P KG+++T+ GT
Sbjct: 176 PYEELKGFEVTRLGT 190
>pdb|1J9J|A Chain A, Crystal Structure Analysis Of Sure Protein From T.Maritima
pdb|1J9J|B Chain B, Crystal Structure Analysis Of Sure Protein From T.Maritima
pdb|1J9K|A Chain A, Crystal Structure Of Sure Protein From T.Maritima In
Complex With Tungstate
pdb|1J9K|B Chain B, Crystal Structure Of Sure Protein From T.Maritima In
Complex With Tungstate
pdb|1J9L|A Chain A, Crystal Structure Of Sure Protein From T.Maritima In
Complex With Vanadate
pdb|1J9L|B Chain B, Crystal Structure Of Sure Protein From T.Maritima In
Complex With Vanadate
Length = 247
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 98/189 (51%), Gaps = 14/189 (7%)
Query: 17 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF-D 75
I+VTNDDGI + G+ L +L + + V V APD E+SA HSIT P+ + +
Sbjct: 3 ILVTNDDGIQSKGIIVLAELL--SEEHEVFVVAPDKERSATGHSITIHVPLWMKKVFISE 60
Query: 76 GVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFH 135
V AY+ +GTPADC L + + V DL++SG+N G N G +++SGTV+GA E
Sbjct: 61 RVVAYSTTGTPADCVKLAYNVVMDKRV-DLIVSGVNRGPNMGMDILHSGTVSGAMEGAMM 119
Query: 136 GVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPN 195
+PS++I S+ N + E + L E LNI++P
Sbjct: 120 NIPSIAI--------SSANYESPDFEGAARFLIDFLKEFDFSLLDPFTMLNINVPAG--E 169
Query: 196 NKGYKLTKQ 204
KG++ T+Q
Sbjct: 170 IKGWRFTRQ 178
>pdb|2E6H|A Chain A, Crystal Structure Of E37a Mutant Of The Stationary Phase
Survival Protein Sure From Thermus Thermophilus Hb8
Cocrystallized With Manganese And Amp
pdb|2E6H|B Chain B, Crystal Structure Of E37a Mutant Of The Stationary Phase
Survival Protein Sure From Thermus Thermophilus Hb8
Cocrystallized With Manganese And Amp
pdb|2E6H|C Chain C, Crystal Structure Of E37a Mutant Of The Stationary Phase
Survival Protein Sure From Thermus Thermophilus Hb8
Cocrystallized With Manganese And Amp
pdb|2E6H|D Chain D, Crystal Structure Of E37a Mutant Of The Stationary Phase
Survival Protein Sure From Thermus Thermophilus Hb8
Cocrystallized With Manganese And Amp
Length = 244
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 81/131 (61%), Gaps = 9/131 (6%)
Query: 17 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISA----RPA 72
I+VTNDDGI +PGL +L ++ V V APD+ +SA H+IT HP+ A P
Sbjct: 3 ILVTNDDGIYSPGLWALAEA--ASQFGEVFVAAPDTAQSAAGHAITIAHPVRAYPHPSPL 60
Query: 73 DFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREA 132
AY V GTPADC +LG+ LF V DLV+SG+N+GSN G+ + +SGTVA A++
Sbjct: 61 HAPHFPAYRVRGTPADCVALGLH--LFGPV-DLVLSGVNLGSNLGHEIWHSGTVAAAKQG 117
Query: 133 FFHGVPSVSIS 143
+ G+ + + S
Sbjct: 118 YLFGLSAAAFS 128
>pdb|2V4N|A Chain A, Crystal Structure Of Salmonella Typhimurium Sure At 1.7
Angstrom Resolution In Orthorhombic Form
Length = 254
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 105/192 (54%), Gaps = 18/192 (9%)
Query: 17 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDG 76
I+++NDDG+ APG+++L + L VQV APD +S S+S+T S R FD
Sbjct: 4 ILLSNDDGVHAPGIQTLAKAL--REFADVQVVAPDRNRSGASNSLTLES--SLRTFTFDN 59
Query: 77 VTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHG 136
GTP DC LGV+ + P PD+V+SGIN G N G V+YSGTVA A E G
Sbjct: 60 GDIAVQMGTPTDCVYLGVNALMRPR-PDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLG 118
Query: 137 VPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIP-- 194
P++++S + G + + T AA C A+L + + LN+++P D+P
Sbjct: 119 FPALAVSLN---GYQHYD--TAAAVTC-----ALLRGLSREPLRTGRILNVNVP-DLPLA 167
Query: 195 NNKGYKLTKQGT 206
KG ++T+ G+
Sbjct: 168 QVKGIRVTRCGS 179
>pdb|2V4O|A Chain A, Crystal Structure Of Salmonella Typhimurium Sure At 2.75
Angstrom Resolution In Monoclinic Form
pdb|2V4O|B Chain B, Crystal Structure Of Salmonella Typhimurium Sure At 2.75
Angstrom Resolution In Monoclinic Form
pdb|2V4O|C Chain C, Crystal Structure Of Salmonella Typhimurium Sure At 2.75
Angstrom Resolution In Monoclinic Form
pdb|2V4O|D Chain D, Crystal Structure Of Salmonella Typhimurium Sure At 2.75
Angstrom Resolution In Monoclinic Form
Length = 267
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 105/192 (54%), Gaps = 18/192 (9%)
Query: 17 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDG 76
I+++NDDG+ APG+++L + L VQV APD +S S+S+T S R FD
Sbjct: 17 ILLSNDDGVHAPGIQTLAKAL--REFADVQVVAPDRNRSGASNSLTLES--SLRTFTFDN 72
Query: 77 VTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHG 136
GTP DC LGV+ + P PD+V+SGIN G N G V+YSGTVA A E G
Sbjct: 73 GDIAVQMGTPTDCVYLGVNALMRPR-PDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLG 131
Query: 137 VPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIP-- 194
P++++S + G + + T AA C A+L + + LN+++P D+P
Sbjct: 132 FPALAVSLN---GYQHYD--TAAAVTC-----ALLRGLSREPLRTGRILNVNVP-DLPLA 180
Query: 195 NNKGYKLTKQGT 206
KG ++T+ G+
Sbjct: 181 QVKGIRVTRCGS 192
>pdb|1ILV|A Chain A, Crystal Structure Analysis Of The Tm107
pdb|1ILV|B Chain B, Crystal Structure Analysis Of The Tm107
Length = 247
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 97/189 (51%), Gaps = 14/189 (7%)
Query: 17 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF-D 75
I+VTNDDGI + G+ L +L + + V V APD E+SA HSIT P+ + +
Sbjct: 3 ILVTNDDGIQSKGIIVLAELL--SEEHEVFVVAPDKERSATGHSITIHVPLWXKKVFISE 60
Query: 76 GVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFH 135
V AY+ +GTPADC L + V DL++SG+N G N G +++SGTV+GA E
Sbjct: 61 RVVAYSTTGTPADCVKLAYNVVXDKRV-DLIVSGVNRGPNXGXDILHSGTVSGAXEGAXX 119
Query: 136 GVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPN 195
+PS++I S+ N + E + L E LNI++P
Sbjct: 120 NIPSIAI--------SSANYESPDFEGAARFLIDFLKEFDFSLLDPFTXLNINVPAG--E 169
Query: 196 NKGYKLTKQ 204
KG++ T+Q
Sbjct: 170 IKGWRFTRQ 178
>pdb|1L5X|A Chain A, The 2.0-Angstrom Resolution Crystal Structure Of A
Survival Protein E (Sure) Homolog From Pyrobaculum
Aerophilum
pdb|1L5X|B Chain B, The 2.0-Angstrom Resolution Crystal Structure Of A
Survival Protein E (Sure) Homolog From Pyrobaculum
Aerophilum
Length = 280
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 73/131 (55%), Gaps = 11/131 (8%)
Query: 17 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDG 76
I+VTNDDG+ +PGLR L + +S V V AP+S KSA IT P+ D G
Sbjct: 3 ILVTNDDGVHSPGLRLLYQFALSLG--DVDVVAPESPKSATGLGITLHKPLRXYEVDLCG 60
Query: 77 VTAYAVSGTPAD---CASLGVSQALFPSVPDLVISGINMGSNCGYHVVY-SGTVAGAREA 132
A A SGTP+D A+ G+ + D+V+SGIN+G N V+ SGT+ A +A
Sbjct: 61 FRAIATSGTPSDTVYLATFGLGRKY-----DIVLSGINLGDNTSLQVILSSGTLGAAFQA 115
Query: 133 FFHGVPSVSIS 143
G+P+++ S
Sbjct: 116 ALLGIPALAYS 126
>pdb|1XQG|A Chain A, 3.10 A Crystal Structure Of Maspin, Space Group P 4 21 2
pdb|1XQG|B Chain B, 3.10 A Crystal Structure Of Maspin, Space Group P 4 21 2
pdb|1XQJ|A Chain A, 3.10 A Crystal Structure Of Maspin, Space Group I 4 2 2
Length = 389
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 2 ERRGIAIVNSDHKPTIMVTND--DGIDAPGLRSL 33
E +G+A+ N HK ++ +T D D I+ PG R L
Sbjct: 323 ETKGVALSNVIHKVSLEITEDGGDSIEVPGARIL 356
>pdb|1WZ9|A Chain A, The 2.1 A Structure Of A Tumour Suppressing Serpin
pdb|1WZ9|B Chain B, The 2.1 A Structure Of A Tumour Suppressing Serpin
Length = 375
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 2 ERRGIAIVNSDHKPTIMVTND--DGIDAPGLRSL 33
E +G+A+ N HK + +T D D I+ PG R L
Sbjct: 309 ETKGVALSNVIHKVXLEITEDGGDSIEVPGARIL 342
>pdb|1XU8|A Chain A, The 2.8 A Structure Of A Tumour Suppressing Serpin
pdb|1XU8|B Chain B, The 2.8 A Structure Of A Tumour Suppressing Serpin
Length = 380
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 2 ERRGIAIVNSDHKPTIMVTND--DGIDAPGLRSL 33
E +G+A+ N HK + +T D D I+ PG R L
Sbjct: 314 ETKGVALSNVIHKVCLEITEDGGDSIEVPGARIL 347
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,217,023
Number of Sequences: 62578
Number of extensions: 335394
Number of successful extensions: 693
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 656
Number of HSP's gapped (non-prelim): 15
length of query: 276
length of database: 14,973,337
effective HSP length: 97
effective length of query: 179
effective length of database: 8,903,271
effective search space: 1593685509
effective search space used: 1593685509
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)