Query 023840
Match_columns 276
No_of_seqs 185 out of 1143
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 07:01:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023840.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023840hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13932 stationary phase surv 100.0 7E-70 1.5E-74 498.2 25.2 221 12-244 3-225 (257)
2 COG0496 SurE Predicted acid ph 100.0 4.7E-70 1E-74 496.5 22.1 219 15-244 1-222 (252)
3 PRK13935 stationary phase surv 100.0 3.7E-69 8.1E-74 492.4 24.2 218 15-244 1-220 (253)
4 PRK13933 stationary phase surv 100.0 5.1E-69 1.1E-73 491.8 25.1 219 15-244 1-222 (253)
5 PRK00346 surE 5'(3')-nucleotid 100.0 9.9E-69 2.1E-73 489.3 24.6 219 15-244 1-220 (250)
6 PRK13931 stationary phase surv 100.0 1.7E-68 3.7E-73 490.3 23.6 225 15-244 1-231 (261)
7 TIGR00087 surE 5'/3'-nucleotid 100.0 4.2E-68 9.2E-73 483.7 24.3 222 15-244 1-227 (244)
8 PRK13934 stationary phase surv 100.0 2.4E-67 5.2E-72 482.9 23.6 217 15-244 1-224 (266)
9 PF01975 SurE: Survival protei 100.0 5.6E-66 1.2E-70 456.3 17.9 191 15-211 1-196 (196)
10 PLN02846 digalactosyldiacylgly 89.7 2.2 4.8E-05 42.9 9.5 41 12-53 2-48 (462)
11 cd03784 GT1_Gtf_like This fami 88.2 0.82 1.8E-05 43.3 5.1 38 15-53 1-39 (401)
12 PF04007 DUF354: Protein of un 85.9 2.2 4.8E-05 41.1 6.7 104 15-144 1-111 (335)
13 PF14336 DUF4392: Domain of un 83.8 1.6 3.6E-05 41.1 4.6 108 28-144 63-183 (291)
14 cd03785 GT1_MurG MurG is an N- 81.2 11 0.00024 34.5 9.0 23 29-52 15-37 (350)
15 TIGR01133 murG undecaprenyldip 81.0 9.8 0.00021 34.8 8.6 36 16-52 2-38 (348)
16 cd03814 GT1_like_2 This family 80.8 25 0.00054 31.2 11.0 28 27-55 17-44 (364)
17 PRK00726 murG undecaprenyldiph 79.7 12 0.00026 34.8 8.8 37 15-52 2-39 (357)
18 PLN02871 UDP-sulfoquinovose:DA 79.0 18 0.00039 35.4 10.2 41 12-53 56-102 (465)
19 TIGR01426 MGT glycosyltransfer 78.4 4 8.6E-05 38.8 5.3 24 30-54 12-35 (392)
20 TIGR00661 MJ1255 conserved hyp 78.1 7.5 0.00016 36.2 6.9 34 98-145 89-122 (321)
21 PF13439 Glyco_transf_4: Glyco 75.1 5.4 0.00012 31.9 4.5 42 17-59 1-46 (177)
22 PF13477 Glyco_trans_4_2: Glyc 74.4 16 0.00036 28.8 7.2 101 17-143 3-106 (139)
23 cd03825 GT1_wcfI_like This fam 72.6 6.4 0.00014 35.5 4.9 38 15-53 1-41 (365)
24 PRK10307 putative glycosyl tra 71.4 6.9 0.00015 37.2 5.0 36 15-51 1-41 (412)
25 PF07075 DUF1343: Protein of u 70.7 17 0.00037 35.6 7.5 111 17-144 2-119 (365)
26 cd03802 GT1_AviGT4_like This f 66.5 13 0.00027 33.3 5.4 40 15-55 1-49 (335)
27 PRK15405 ethanolamine utilizat 62.0 44 0.00095 30.6 7.8 102 28-134 46-201 (217)
28 PF04007 DUF354: Protein of un 61.3 8.7 0.00019 37.1 3.5 19 123-143 256-274 (335)
29 PRK12446 undecaprenyldiphospho 59.7 53 0.0011 31.4 8.5 22 26-49 15-36 (352)
30 COG0726 CDA1 Predicted xylanas 59.6 17 0.00037 31.6 4.7 36 14-49 64-100 (267)
31 cd03820 GT1_amsD_like This fam 58.7 55 0.0012 28.4 7.9 38 16-54 1-42 (348)
32 PRK09864 putative peptidase; P 56.4 44 0.00096 32.5 7.4 134 28-168 178-339 (356)
33 TIGR03107 glu_aminopep glutamy 55.8 34 0.00074 33.2 6.5 133 28-168 181-339 (350)
34 PF13579 Glyco_trans_4_4: Glyc 53.5 15 0.00032 28.7 3.1 97 30-145 7-105 (160)
35 PRK06849 hypothetical protein; 51.9 23 0.0005 33.9 4.7 36 12-51 2-37 (389)
36 TIGR01303 IMP_DH_rel_1 IMP deh 51.3 72 0.0016 32.3 8.2 102 28-143 224-335 (475)
37 PF03033 Glyco_transf_28: Glyc 49.3 15 0.00032 29.2 2.5 23 31-54 16-38 (139)
38 PF01205 UPF0029: Uncharacteri 49.2 22 0.00048 29.0 3.5 32 17-49 50-83 (110)
39 cd04962 GT1_like_5 This family 48.2 96 0.0021 28.2 8.0 33 19-52 7-39 (371)
40 PRK15415 propanediol utilizati 48.2 19 0.00041 33.9 3.3 55 81-135 185-242 (266)
41 TIGR00045 glycerate kinase. Th 47.4 1.1E+02 0.0025 30.1 8.7 71 102-174 283-368 (375)
42 cd03805 GT1_ALG2_like This fam 45.8 25 0.00053 32.6 3.7 37 15-52 1-40 (392)
43 cd03141 GATase1_Hsp31_like Typ 45.3 28 0.0006 31.1 3.9 31 23-54 18-48 (221)
44 cd03798 GT1_wlbH_like This fam 44.6 2.1E+02 0.0046 24.9 9.4 29 28-57 18-46 (377)
45 PRK10342 glycerate kinase I; P 44.5 1.5E+02 0.0032 29.4 8.9 42 102-145 284-325 (381)
46 cd06167 LabA_like LabA_like pr 44.3 37 0.0008 27.6 4.2 30 16-51 103-132 (149)
47 COG1817 Uncharacterized protei 43.8 16 0.00035 35.4 2.2 22 121-144 258-279 (346)
48 TIGR01918 various_sel_PB selen 42.5 28 0.00061 34.9 3.7 44 98-144 72-115 (431)
49 TIGR01917 gly_red_sel_B glycin 42.4 28 0.00062 34.9 3.7 44 98-144 72-115 (431)
50 PRK09932 glycerate kinase II; 41.4 1.7E+02 0.0037 29.0 8.9 40 102-145 284-325 (381)
51 PF02595 Gly_kinase: Glycerate 38.6 57 0.0012 32.2 5.1 61 81-145 265-325 (377)
52 COG1926 Predicted phosphoribos 38.4 41 0.00088 30.9 3.7 67 16-96 126-193 (220)
53 COG2065 PyrR Pyrimidine operon 36.2 24 0.00051 31.3 1.8 22 118-139 103-126 (179)
54 cd03817 GT1_UGDG_like This fam 35.8 52 0.0011 29.1 4.1 28 26-54 16-43 (374)
55 PF07355 GRDB: Glycine/sarcosi 35.7 42 0.00092 32.8 3.7 55 85-143 64-118 (349)
56 PRK06843 inosine 5-monophospha 35.5 1.2E+02 0.0026 30.2 6.9 103 30-143 154-263 (404)
57 PRK08334 translation initiatio 34.3 53 0.0012 32.2 4.1 43 101-143 237-279 (356)
58 smart00775 LNS2 LNS2 domain. T 33.3 44 0.00096 28.3 3.1 18 24-41 26-43 (157)
59 TIGR03449 mycothiol_MshA UDP-N 33.1 1E+02 0.0022 28.9 5.8 24 29-53 25-48 (405)
60 PF01936 NYN: NYN domain; Int 33.0 37 0.0008 27.2 2.4 29 16-50 99-127 (146)
61 TIGR02884 spore_pdaA delta-lac 32.4 52 0.0011 29.4 3.5 37 11-48 33-69 (224)
62 cd03816 GT1_ALG1_like This fam 32.0 60 0.0013 31.3 4.1 36 14-51 5-40 (415)
63 COG1929 Glycerate kinase [Carb 31.8 61 0.0013 32.0 4.0 42 102-145 284-325 (378)
64 PRK11568 hypothetical protein; 31.8 57 0.0012 29.4 3.6 29 20-49 69-99 (204)
65 TIGR03568 NeuC_NnaA UDP-N-acet 31.8 1.2E+02 0.0026 29.1 6.1 103 30-145 16-126 (365)
66 PRK14697 bifunctional 5'-methy 31.5 2E+02 0.0044 25.8 7.2 49 127-175 175-228 (233)
67 cd01482 vWA_collagen_alphaI-XI 31.1 83 0.0018 26.1 4.3 31 16-49 107-137 (164)
68 smart00368 LRR_RI Leucine rich 30.5 48 0.001 20.0 2.1 26 13-38 2-27 (28)
69 PF10841 DUF2644: Protein of u 30.2 20 0.00042 26.5 0.3 24 18-41 3-27 (60)
70 PRK05772 translation initiatio 30.0 1.7E+02 0.0037 28.8 6.8 94 36-143 194-287 (363)
71 PRK12767 carbamoyl phosphate s 29.8 78 0.0017 29.1 4.3 33 15-52 2-35 (326)
72 cd03794 GT1_wbuB_like This fam 29.0 89 0.0019 27.6 4.4 28 27-55 17-44 (394)
73 PRK06714 S-adenosylhomocystein 28.8 2.2E+02 0.0048 25.8 7.0 51 125-175 174-229 (236)
74 TIGR02764 spore_ybaN_pdaB poly 28.6 76 0.0016 27.1 3.8 31 12-42 3-33 (191)
75 PHA03392 egt ecdysteroid UDP-g 28.1 50 0.0011 33.4 2.9 40 13-53 19-60 (507)
76 cd03132 GATase1_catalase Type 27.6 1.9E+02 0.0041 23.3 5.8 35 17-54 6-40 (142)
77 PRK11249 katE hydroperoxidase 27.2 2E+02 0.0043 31.1 7.2 39 13-52 596-634 (752)
78 cd03808 GT1_cap1E_like This fa 27.2 62 0.0013 28.2 3.0 37 18-55 4-40 (359)
79 PRK03359 putative electron tra 27.1 1.2E+02 0.0026 28.2 5.0 50 89-145 99-148 (256)
80 PRK12342 hypothetical protein; 26.6 1.2E+02 0.0026 28.2 4.9 49 90-145 97-145 (254)
81 TIGR00257 IMPACT_YIGZ uncharac 26.5 81 0.0017 28.4 3.7 29 20-49 69-99 (204)
82 cd03796 GT1_PIG-A_like This fa 26.4 92 0.002 29.5 4.3 25 27-52 17-41 (398)
83 PF08323 Glyco_transf_5: Starc 26.0 66 0.0014 29.1 3.1 22 30-52 22-43 (245)
84 PRK05584 5'-methylthioadenosin 25.9 2.4E+02 0.0052 24.8 6.6 48 125-172 175-227 (230)
85 cd03791 GT1_Glycogen_synthase_ 25.9 65 0.0014 31.2 3.2 24 30-54 22-45 (476)
86 TIGR01441 GPR GPR endopeptidas 25.8 1.6E+02 0.0034 29.0 5.7 72 82-174 157-251 (358)
87 PF00156 Pribosyltran: Phospho 25.8 73 0.0016 24.8 2.9 33 13-47 87-120 (125)
88 PRK11780 isoprenoid biosynthes 25.7 1E+02 0.0022 27.8 4.1 36 17-53 6-44 (217)
89 PF13528 Glyco_trans_1_3: Glyc 25.6 76 0.0017 28.8 3.4 32 100-145 92-123 (318)
90 PRK05720 mtnA methylthioribose 25.2 96 0.0021 30.2 4.1 44 101-144 224-267 (344)
91 PLN00016 RNA-binding protein; 25.1 93 0.002 29.5 4.0 38 14-52 52-90 (378)
92 PRK02858 germination protease; 24.7 1.7E+02 0.0037 28.9 5.7 72 82-174 167-261 (369)
93 PF00381 PTS-HPr: PTS HPr comp 24.7 1E+02 0.0022 23.2 3.4 33 15-48 4-36 (84)
94 PF01008 IF-2B: Initiation fac 24.3 65 0.0014 29.5 2.7 45 102-146 176-220 (282)
95 PRK08535 translation initiatio 24.2 89 0.0019 29.7 3.7 43 102-144 188-230 (310)
96 PRK06371 translation initiatio 24.0 1.1E+02 0.0023 29.7 4.2 43 101-143 214-256 (329)
97 PRK07322 adenine phosphoribosy 23.4 1.3E+02 0.0029 25.9 4.4 30 14-45 120-150 (178)
98 cd01475 vWA_Matrilin VWA_Matri 23.3 1.2E+02 0.0026 26.7 4.2 30 17-49 113-142 (224)
99 PLN00414 glycosyltransferase f 23.1 4.5E+02 0.0098 26.2 8.6 27 30-57 21-47 (446)
100 cd01476 VWA_integrin_invertebr 23.1 1.3E+02 0.0029 24.4 4.2 32 16-50 107-139 (163)
101 PRK08335 translation initiatio 22.7 1E+02 0.0022 29.1 3.7 43 102-144 177-219 (275)
102 PRK08525 amidophosphoribosyltr 22.6 1.1E+02 0.0025 30.5 4.2 38 13-51 339-377 (445)
103 PF00201 UDPGT: UDP-glucoronos 22.4 33 0.00072 33.7 0.4 36 16-52 2-37 (500)
104 TIGR00512 salvage_mtnA S-methy 22.4 1.2E+02 0.0027 29.3 4.3 44 101-144 224-267 (331)
105 cd03135 GATase1_DJ-1 Type 1 gl 22.3 1.3E+02 0.0027 24.5 3.9 32 22-54 6-37 (163)
106 PRK05784 phosphoribosylamine-- 21.6 8.4E+02 0.018 24.7 10.2 32 15-52 1-34 (486)
107 PRK13609 diacylglycerol glucos 21.6 1.5E+02 0.0033 27.7 4.7 42 12-54 2-45 (380)
108 TIGR03590 PseG pseudaminic aci 21.5 1.2E+02 0.0026 27.9 3.9 19 127-145 251-269 (279)
109 PF06722 DUF1205: Protein of u 21.5 1.4E+02 0.003 23.7 3.7 48 11-59 37-91 (97)
110 PRK12827 short chain dehydroge 21.4 2.1E+02 0.0046 24.4 5.3 33 13-50 5-38 (249)
111 PF04230 PS_pyruv_trans: Polys 21.4 79 0.0017 27.0 2.5 23 123-145 263-285 (286)
112 PRK06372 translation initiatio 21.4 1.3E+02 0.0027 28.2 4.0 44 102-145 151-194 (253)
113 TIGR00524 eIF-2B_rel eIF-2B al 21.2 1.3E+02 0.0029 28.5 4.2 44 101-144 196-239 (303)
114 PRK12825 fabG 3-ketoacyl-(acyl 21.2 1.6E+02 0.0034 25.0 4.4 39 9-51 1-39 (249)
115 COG0300 DltE Short-chain dehyd 21.1 1.8E+02 0.0039 27.3 5.0 37 12-53 4-41 (265)
116 PRK06698 bifunctional 5'-methy 20.8 3.3E+02 0.0072 26.8 7.1 49 127-175 175-228 (459)
117 TIGR01133 murG undecaprenyldip 20.6 1.1E+02 0.0025 27.8 3.5 23 121-144 256-278 (348)
118 cd03148 GATase1_EcHsp31_like T 20.5 1.4E+02 0.0031 27.0 4.1 30 23-53 21-50 (232)
No 1
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=7e-70 Score=498.19 Aligned_cols=221 Identities=31% Similarity=0.494 Sum_probs=193.3
Q ss_pred CCCCeEEEecCCCCCCcCHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccCC-CCeeEEecCChHHHH
Q 023840 12 DHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFD-GVTAYAVSGTPADCA 90 (276)
Q Consensus 12 ~~~~~ILlTNDDGi~spGi~aL~~aL~~~g~~~V~VVAP~~~qSg~g~sit~~~pl~v~~~~~~-g~~~~~v~GTPaDcV 90 (276)
+++|||||||||||+||||++|+++|++.| +|+||||++||||+||++|+++||++++++.+ +..+|+|+|||||||
T Consensus 3 ~~~M~ILltNDDGi~a~Gi~aL~~~l~~~g--~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaDCV 80 (257)
T PRK13932 3 DKKPHILVCNDDGIEGEGIHVLAASMKKIG--RVTVVAPAEPHSGMSHAMTLGVPLRIKEYQKNNRFFGYTVSGTPVDCI 80 (257)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHhCC--CEEEEcCCCCCCCCcccccCCCCeEEEEEccCCCceEEEEcCcHHHHH
Confidence 467999999999999999999999999877 89999999999999999999999999998744 456899999999999
Q ss_pred HHhhhcccCCCCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEeeecCCCCCCCcccHHHHHHHHHHHHHH
Q 023840 91 SLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAI 170 (276)
Q Consensus 91 ~~al~~~l~~~~PDLVVSGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS~~~~~~~~~~~~~~~aa~~~~~li~~l 170 (276)
++||++ +++.+|||||||||+|.|+|.+++||||||||+||+++||||||||+... ...+|+.|++++.++++++
T Consensus 81 ~lal~~-~~~~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~~~~----~~~~~~~aa~~~~~l~~~l 155 (257)
T PRK13932 81 KVALSH-ILPEKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSLTTY----ENADFTYAGKFARKLARKV 155 (257)
T ss_pred HHHHHh-hcCCCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEcccC----CcCCHHHHHHHHHHHHHHH
Confidence 999996 56778999999999999999999999999999999999999999998632 1237999999998888876
Q ss_pred HHHHHhCCCCCCcEEEecCCCCC-CCCCCEEEEecccccccceEEEeeecCCCceeeeeccCCCCCcccccCCCC
Q 023840 171 LAEIRNQTYPERCFLNIDLPTDI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTS 244 (276)
Q Consensus 171 ~~~~~~~~~p~~~~LNVN~P~~~-~~~~g~~~tr~g~~~~~~~~~~~~~~~~G~~~yw~~t~~~~~~~~~~~~~~ 244 (276)
+ ...+|++++||||||.++ .+.+|+|+||||++.|.+.++++ .+|+|++|||.+....+.+..++||+.
T Consensus 156 ~----~~~~p~~~~LNVN~P~~~~~~~~gik~t~~g~~~~~~~~~~~-~dp~g~~yywl~~~~~~~~~~~~tD~~ 225 (257)
T PRK13932 156 L----REGLPPDTILSVNIPNVPESDIQGVLITRQGRSRWEEDAIER-HDMYGNPYYWLNGTLQLLDDSLTQDEY 225 (257)
T ss_pred H----hcCCCCCcEEEEEeCCCCccccCCEEEeeCCCcccccceEEe-ECcCCCeEEEECCCccCCCCCCCChHH
Confidence 6 356899999999999976 56899999999999999999887 599999999998322222334566654
No 2
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=100.00 E-value=4.7e-70 Score=496.46 Aligned_cols=219 Identities=37% Similarity=0.578 Sum_probs=195.9
Q ss_pred CeEEEecCCCCCCcCHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHHHhh
Q 023840 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGV 94 (276)
Q Consensus 15 ~~ILlTNDDGi~spGi~aL~~aL~~~g~~~V~VVAP~~~qSg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al 94 (276)
|||||||||||+||||++|+++|+. + +||+||||++||||+|||+|+++|+++++++. ..|+|+|||+|||.+||
T Consensus 1 mrILlTNDDGi~a~Gi~aL~~al~~-~-~dV~VVAP~~~qSg~s~slTl~~Plr~~~~~~---~~~av~GTPaDCV~lal 75 (252)
T COG0496 1 MRILLTNDDGIHAPGIRALARALRE-G-ADVTVVAPDREQSGASHSLTLHEPLRVRQVDN---GAYAVNGTPADCVILGL 75 (252)
T ss_pred CeEEEecCCccCCHHHHHHHHHHhh-C-CCEEEEccCCCCcccccccccccCceeeEecc---ceEEecCChHHHHHHHH
Confidence 7999999999999999999999994 3 69999999999999999999999999999873 67999999999999999
Q ss_pred hcccCCC-CCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEeeecCCC-CCCCcccHHHHHHHHHHHHHHHH
Q 023840 95 SQALFPS-VPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGG-KSNVNDYTLAAEACLPIINAILA 172 (276)
Q Consensus 95 ~~~l~~~-~PDLVVSGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS~~~~~~-~~~~~~~~~aa~~~~~li~~l~~ 172 (276)
+. ++++ +|||||||||.|.|+|.|++|||||||||||+++||||||+|+..... .....+|+.|++++..++++++
T Consensus 76 ~~-l~~~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~~~~~~~~~~~~~e~A~~~~~~lv~~l~- 153 (252)
T COG0496 76 NE-LLKEPRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLAYREAFGKQDVDFETAAKVARALVEALL- 153 (252)
T ss_pred HH-hccCCCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeehhccccccccccHHHHHHHHHHHHHHHH-
Confidence 96 6654 499999999999999999999999999999999999999999975422 1123589999999988888877
Q ss_pred HHHhCCCCCCcEEEecCCCCC-CCCCCEEEEecccccccceEEEeeecCCCceeeeeccCCCCCcccccCCCC
Q 023840 173 EIRNQTYPERCFLNIDLPTDI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTS 244 (276)
Q Consensus 173 ~~~~~~~p~~~~LNVN~P~~~-~~~~g~~~tr~g~~~~~~~~~~~~~~~~G~~~yw~~t~~~~~~~~~~~~~~ 244 (276)
...+|+.++||||||+++ .+.+|+++||+|+++|...+.++ .||||++|||++..+...+..++||+.
T Consensus 154 ---~~p~~~~~llNVNiP~~~~~~~~gi~vtr~g~~~~~~~~~~r-~dprG~~yyW~~~~~~~~~~~~gtD~~ 222 (252)
T COG0496 154 ---ANPLPPDTLLNVNIPNLPLEEIKGIRVTRLGRRRYAEPVEER-TDPRGEPYYWIGPGGLAEDAEEGTDFH 222 (252)
T ss_pred ---hCCCCCCcEEEEeCCCCCccccCcEEEEechhhhccCcccee-eCCCCCEEEEecCCCccccCCCCchHH
Confidence 347899999999999975 67999999999999999999988 599999999999888877778888763
No 3
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=3.7e-69 Score=492.45 Aligned_cols=218 Identities=38% Similarity=0.506 Sum_probs=189.8
Q ss_pred CeEEEecCCCCCCcCHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccC-CCCeeEEecCChHHHHHHh
Q 023840 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF-DGVTAYAVSGTPADCASLG 93 (276)
Q Consensus 15 ~~ILlTNDDGi~spGi~aL~~aL~~~g~~~V~VVAP~~~qSg~g~sit~~~pl~v~~~~~-~g~~~~~v~GTPaDcV~~a 93 (276)
|||||||||||+||||++|+++|++. |+|+||||++||||+|||+|+++|+++++++. ++..+|+|+|||||||++|
T Consensus 1 M~ILlTNDDGi~a~Gi~aL~~~l~~~--~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaDcV~la 78 (253)
T PRK13935 1 MNILVTNDDGITSPGIIILAEYLSEK--HEVFVVAPDKERSATGHAITIRVPLWAKKVFISERFVAYATTGTPADCVKLG 78 (253)
T ss_pred CeEEEECCCCCCCHHHHHHHHHHHhC--CcEEEEccCCCCccccccccCCCCceEEEeecCCCccEEEECCcHHHHHHHH
Confidence 68999999999999999999999863 59999999999999999999999999999864 3556899999999999999
Q ss_pred hhcccCCCCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEeeecCCCCCCCcccHHHHHHHHHHHHHHHHH
Q 023840 94 VSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAE 173 (276)
Q Consensus 94 l~~~l~~~~PDLVVSGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS~~~~~~~~~~~~~~~aa~~~~~li~~l~~~ 173 (276)
|++ +++++|||||||||+|.|+|.+++||||||||+||+++||||||||+... ...+|+.+++++.+++++++
T Consensus 79 l~~-~~~~~pDLVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~~~~----~~~~~~~aa~~~~~l~~~l~-- 151 (253)
T PRK13935 79 YDV-IMDKKVDLVISGINRGPNLGTDVLYSGTVSGALEGAMMGVPSIAISSADF----ENPDYETAARFLLNFLEEFD-- 151 (253)
T ss_pred HHh-hccCCCCEEEeCCccCCCCCcCCcccHhHHHHHHHHhcCCCeEEEEcccC----CccCHHHHHHHHHHHHHHHH--
Confidence 996 56778999999999999999999999999999999999999999998521 12379999999988888765
Q ss_pred HHhCCCCCCcEEEecCCCCC-CCCCCEEEEecccccccceEEEeeecCCCceeeeeccCCCCCcccccCCCC
Q 023840 174 IRNQTYPERCFLNIDLPTDI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTS 244 (276)
Q Consensus 174 ~~~~~~p~~~~LNVN~P~~~-~~~~g~~~tr~g~~~~~~~~~~~~~~~~G~~~yw~~t~~~~~~~~~~~~~~ 244 (276)
+..+|++++||||||..+ .+.+|+|+||||++.|.+.++++ .+++|++|||.+....+.+..++||+.
T Consensus 152 --~~~~p~~~~LNVN~P~~~~~~~~gik~tr~g~~~~~~~~~~~-~dp~g~~~yw~~~~~~~~~~~~~tD~~ 220 (253)
T PRK13935 152 --FSLLPPFTALNINVPSVPYGEIKGWKLTRQSRRRYNDYFEER-VDPFGNKYYWMMGEIIEDDPDDDVDYK 220 (253)
T ss_pred --hcCCCCCcEEEEEeCcCChhhcCCeEEeeCCCcccCCceEEE-ECCCCCeEEEECCCccCCCCCCCchHH
Confidence 456899999999999976 56899999999999999999887 599999999997322222334566654
No 4
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=5.1e-69 Score=491.78 Aligned_cols=219 Identities=34% Similarity=0.538 Sum_probs=190.1
Q ss_pred CeEEEecCCCCCCcCHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccCC--CCeeEEecCChHHHHHH
Q 023840 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFD--GVTAYAVSGTPADCASL 92 (276)
Q Consensus 15 ~~ILlTNDDGi~spGi~aL~~aL~~~g~~~V~VVAP~~~qSg~g~sit~~~pl~v~~~~~~--g~~~~~v~GTPaDcV~~ 92 (276)
|||||||||||+||||++|+++|++. |+|+||||++||||+||++|+++|+++++++.+ +.++|+|+|||||||++
T Consensus 1 M~ILvtNDDGi~apGl~aL~~~l~~~--~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~v~GTPaDcV~l 78 (253)
T PRK13933 1 MNILLTNDDGINAEGINTLAELLSKY--HEVIIVAPENQRSASSHSITIYEPIIIKEVKLEGINSKAYSISGTPADCVRV 78 (253)
T ss_pred CeEEEEcCCCCCChhHHHHHHHHHhC--CcEEEEccCCCCccccccccCCCCeEEEeeccCCCCccEEEECCcHHHHHHH
Confidence 68999999999999999999999863 599999999999999999999999999998744 34589999999999999
Q ss_pred hhhcccCCCCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEeeecCCCCCCCcccHHHHHHHHHHHHHHHH
Q 023840 93 GVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILA 172 (276)
Q Consensus 93 al~~~l~~~~PDLVVSGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS~~~~~~~~~~~~~~~aa~~~~~li~~l~~ 172 (276)
||++ +++++|||||||||+|.|+|.+++||||||||+||+++||||||+|+..... ...+|+.|++++.+++++++
T Consensus 79 al~~-l~~~~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S~~~~~~--~~~~~~~a~~~~~~lv~~l~- 154 (253)
T PRK13933 79 ALDK-LVPDNIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSIAVSADVKKG--KDENYKIAAKYALEVLNILK- 154 (253)
T ss_pred HHHH-hcCCCCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcCCCeEEEEeccCCC--CcccHHHHHHHHHHHHHHHH-
Confidence 9996 5677899999999999999999999999999999999999999999964211 12369999999999988776
Q ss_pred HHHhCCCCCCcEEEecCCCCC-CCCCCEEEEecccccccceEEEeeecCCCceeeeeccCCCCCcccccCCCC
Q 023840 173 EIRNQTYPERCFLNIDLPTDI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTS 244 (276)
Q Consensus 173 ~~~~~~~p~~~~LNVN~P~~~-~~~~g~~~tr~g~~~~~~~~~~~~~~~~G~~~yw~~t~~~~~~~~~~~~~~ 244 (276)
+..+|++++||||||.++ .+.+|+|+||||++.|.+.++++ .+|+|++|||.+.. ...+..++||+.
T Consensus 155 ---~~~~p~~~~lNvNiP~~~~~~~~g~k~t~~g~r~y~~~~~~~-~dp~g~~~ywl~g~-~~~~~~~~tD~~ 222 (253)
T PRK13933 155 ---KEDLKNDVVLNLNVPFCSEEEIKGIKVCKVGNKTFNTYFSEE-IDEEGNKVYKLEGD-INKDIYEGTDVY 222 (253)
T ss_pred ---hcCCCCCcEEEEecCCCchhhcCCeEEEeCCccccCCceEEE-ECCCCCeEEEEcCC-ccCCCCCCCcHH
Confidence 356899999999999986 56899999999999999999887 59999999999722 222223566653
No 5
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=100.00 E-value=9.9e-69 Score=489.27 Aligned_cols=219 Identities=34% Similarity=0.537 Sum_probs=189.8
Q ss_pred CeEEEecCCCCCCcCHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHHHhh
Q 023840 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGV 94 (276)
Q Consensus 15 ~~ILlTNDDGi~spGi~aL~~aL~~~g~~~V~VVAP~~~qSg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al 94 (276)
|||||||||||+||||++|+++|++. |+|+||||++||||+||++|+++|+++++++ ...|+|+|||||||++||
T Consensus 1 M~ILlTNDDGi~a~Gi~aL~~~l~~~--~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~---~~~~~v~GTPaDcV~~gl 75 (250)
T PRK00346 1 MRILLTNDDGIHAPGIRALAEALREL--ADVTVVAPDRERSGASHSLTLTRPLRVEKVD---NGFYAVDGTPTDCVHLAL 75 (250)
T ss_pred CeEEEECCCCCCChhHHHHHHHHHhC--CCEEEEeCCCCCcCCcccccCCCCeEEEEec---CCeEEECCcHHHHHHHHH
Confidence 79999999999999999999999986 4999999999999999999999999999985 246999999999999999
Q ss_pred hcccCCCCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEeeecCCCCCCCcccHHHHHHHHHHHHHHHHHH
Q 023840 95 SQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEI 174 (276)
Q Consensus 95 ~~~l~~~~PDLVVSGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS~~~~~~~~~~~~~~~aa~~~~~li~~l~~~~ 174 (276)
++ +++++|||||||||+|.|+|.+++||||||||+||+++||||||||+..........+|+.++++++++++++++
T Consensus 76 ~~-l~~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~~~~~~~~~~~~~~~a~~~~~~li~~l~~-- 152 (250)
T PRK00346 76 NG-LLDPKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSLAVSEGSRGWRDFETAAKVARELVRKLLE-- 152 (250)
T ss_pred Hh-hccCCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEecccccccCchhhHHHHHHHHHHHHHHHHh--
Confidence 96 667789999999999999999999999999999999999999999996421112223699999999999888773
Q ss_pred HhCCCCCCcEEEecCCCCC-CCCCCEEEEecccccccceEEEeeecCCCceeeeeccCCCCCcccccCCCC
Q 023840 175 RNQTYPERCFLNIDLPTDI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTS 244 (276)
Q Consensus 175 ~~~~~p~~~~LNVN~P~~~-~~~~g~~~tr~g~~~~~~~~~~~~~~~~G~~~yw~~t~~~~~~~~~~~~~~ 244 (276)
..+|++++||||||.++ .+.+|+|+||||++.|.+.++++ .+++|++|||.+....+.+..+++|+.
T Consensus 153 --~~~p~~~~lNvN~P~~~~~~~~g~~~t~~g~~~~~~~~~~~-~d~~g~~~yw~~~~~~~~~~~~~tD~~ 220 (250)
T PRK00346 153 --KPLPPGTLLNVNVPDLPPEEIKGIRVTRLGKRHYAEEVIKR-VDPRGRPYYWIGGAGLEEDAGEGTDFH 220 (250)
T ss_pred --cCCCCCcEEEEEeCCCCcccCCCEEEEeCCCccccCceEEE-ECcCCCeEEEECCCccCCCCCCCChHH
Confidence 45899999999999976 56899999999999999999887 599999999997433332334566653
No 6
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=1.7e-68 Score=490.33 Aligned_cols=225 Identities=29% Similarity=0.438 Sum_probs=187.4
Q ss_pred CeEEEecCCCCCCcCHHHHHHHHHhcC--CccEEEEeeCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHHH
Q 023840 15 PTIMVTNDDGIDAPGLRSLVRVLVSTN--RYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASL 92 (276)
Q Consensus 15 ~~ILlTNDDGi~spGi~aL~~aL~~~g--~~~V~VVAP~~~qSg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~ 92 (276)
|||||||||||+||||++|+++|++.. .++|+||||++||||+||++|+++||++++++ ...|+|+|||||||++
T Consensus 1 M~ILlTNDDGI~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT~~~pl~~~~~~---~~~yav~GTPaDCV~l 77 (261)
T PRK13931 1 MRILITNDDGINAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCISYTHPMMIAELG---PRRFAAEGSPADCVLA 77 (261)
T ss_pred CeEEEEcCCCCCCHhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccccCCCCeEEEEeC---CCeEEEcCchHHHHHH
Confidence 689999999999999999999998751 14999999999999999999999999999875 2469999999999999
Q ss_pred hhhcccCC-CCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEeeecCC-CCCCCcccHHHHHHHHHHHHHH
Q 023840 93 GVSQALFP-SVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVG-GKSNVNDYTLAAEACLPIINAI 170 (276)
Q Consensus 93 al~~~l~~-~~PDLVVSGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS~~~~~-~~~~~~~~~~aa~~~~~li~~l 170 (276)
||++ +++ .+|||||||||+|.|+|.+++||||||||+||+++||||||||+.+.. ......+|+.|+++++++++++
T Consensus 78 al~~-~~~~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~~~~~~~~~~~~~~~~a~~~~~~l~~~~ 156 (261)
T PRK13931 78 ALYD-VMKDAPPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQYYGPRNEGLDDPFEAARTHGARVVRKL 156 (261)
T ss_pred HHHH-hcCCCCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEeeccCCCccccccHHHHHHHHHHHHHHH
Confidence 9996 555 689999999999999999999999999999999999999999986421 1111236999999999999888
Q ss_pred HHHHHhCCCCCCcEEEecCCCCC-CCCCCEEEEeccccccc-ceEEEeeecCCCceeeeeccCCCCCcccccCCCC
Q 023840 171 LAEIRNQTYPERCFLNIDLPTDI-PNNKGYKLTKQGTSIFK-MGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTS 244 (276)
Q Consensus 171 ~~~~~~~~~p~~~~LNVN~P~~~-~~~~g~~~tr~g~~~~~-~~~~~~~~~~~G~~~yw~~t~~~~~~~~~~~~~~ 244 (276)
+++...+..|++++||||||..+ .+.+|+|+||||++.|. +.++++ .+++|++|||.+....+.+..++||++
T Consensus 157 l~~~~~~~~~~~~~lNVN~P~~~~~~~~gik~t~~g~~~~~~~~~~~~-~d~~g~~~yw~~~~~~~~~~~~~tD~~ 231 (261)
T PRK13931 157 LEAGPWDDEDYRLFYNVNFPPVPAADVKGIRVAAQGFREGTRFGVEPH-MSPSGRRFLWIKGGAQQVPTAPGTDAA 231 (261)
T ss_pred HhccCCCCCCCCeEEEEEeCcCCcccCCceEEeECCcccccCCceEEE-ECCCCCeEEEEcCCCcCCCCCCCCHHH
Confidence 75321112344589999999976 56799999999999998 888776 599999999987433333334566654
No 7
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=100.00 E-value=4.2e-68 Score=483.75 Aligned_cols=222 Identities=36% Similarity=0.588 Sum_probs=191.9
Q ss_pred CeEEEecCCCCCCcCHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccC-CCCeeEEecCChHHHHHHh
Q 023840 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF-DGVTAYAVSGTPADCASLG 93 (276)
Q Consensus 15 ~~ILlTNDDGi~spGi~aL~~aL~~~g~~~V~VVAP~~~qSg~g~sit~~~pl~v~~~~~-~g~~~~~v~GTPaDcV~~a 93 (276)
|||||||||||+||||++|+++|++.| +|+||||++||||+||++|+++|+++++++. ++.++|+|+|||||||++|
T Consensus 1 M~ILltNDDGi~a~Gi~aL~~~l~~~g--~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~~~v~GTPaDcv~~g 78 (244)
T TIGR00087 1 MKILLTNDDGIHSPGIRALYQALKELG--EVTVVAPARQRSGTGHSLTLFEPLRVGQVKVKNGAHIYAVDGTPTDCVILG 78 (244)
T ss_pred CeEEEECCCCCCCHhHHHHHHHHHhCC--CEEEEeCCCCccccccCcCCCCCeEEEEeccCCCccEEEEcCcHHHHHHHH
Confidence 799999999999999999999999977 8999999999999999999999999999874 3556899999999999999
Q ss_pred hhcccCCCCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEeeecCCCC--CCCcccHHHHHHHHHHHHHHH
Q 023840 94 VSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGK--SNVNDYTLAAEACLPIINAIL 171 (276)
Q Consensus 94 l~~~l~~~~PDLVVSGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS~~~~~~~--~~~~~~~~aa~~~~~li~~l~ 171 (276)
|++ +++++|||||||||+|.|+|.+++||||||||+||+++||||||||+...... +...+|+.+++++.+++++++
T Consensus 79 l~~-l~~~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~~~~~~~~~~~~~~~~~aa~~~~~li~~l~ 157 (244)
T TIGR00087 79 INE-LMPEVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISLQIFNGYKNSSPLDFDIAAKVTNAIVKNLL 157 (244)
T ss_pred HHH-hccCCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEecccCcccccccccHHHHHHHHHHHHHHHH
Confidence 996 66788999999999999999999999999999999999999999998642211 123469999999999888776
Q ss_pred HHHHhCCCCCCcEEEecCCCCC-CCCCCEEEEecccccccceEEEeeecCCCceeeeeccCCCC-CcccccCCCC
Q 023840 172 AEIRNQTYPERCFLNIDLPTDI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTD-SAVTIETDTS 244 (276)
Q Consensus 172 ~~~~~~~~p~~~~LNVN~P~~~-~~~~g~~~tr~g~~~~~~~~~~~~~~~~G~~~yw~~t~~~~-~~~~~~~~~~ 244 (276)
+..+|++++||||||.++ .+.+|+|+||||++.|.+.++++ .+++|+.|||.+..... .+..++||+.
T Consensus 158 ----~~~~p~~~~lNVN~P~~~~~~~~g~~~t~~~~~~~~~~~~~~-~d~~g~~~~w~~~~~~~~~~~~~~tD~~ 227 (244)
T TIGR00087 158 ----KNGLPGGDLLNVNVPLVPSIQNTGIRITRLGRRMYATSVEER-TDPRGRSYYWIGGDPGARCDREPGTDVD 227 (244)
T ss_pred ----hcCCCCCcEEEEEeCCCCcccCCCEEEEECCccccccCceEe-ECCCCCeEEEeCCCccccCCCCCCCHHH
Confidence 346899999999999976 46899999999999999999887 59999999999732211 2334566643
No 8
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=2.4e-67 Score=482.95 Aligned_cols=217 Identities=29% Similarity=0.420 Sum_probs=185.8
Q ss_pred CeEEEecCCCCCCcCHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHHHhh
Q 023840 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGV 94 (276)
Q Consensus 15 ~~ILlTNDDGi~spGi~aL~~aL~~~g~~~V~VVAP~~~qSg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al 94 (276)
|||||||||||+||||++|+++|++.| +|+||||++||||+|||+|+++|+++++++.++.++|+|+|||||||++||
T Consensus 1 M~ILlTNDDGi~apGi~aL~~al~~~g--~V~VvAP~~eqSg~g~aiT~~~pl~~~~~~~~~~~~y~v~GTPaDCV~lal 78 (266)
T PRK13934 1 MKILVTNDDGVHSPGLRLLYEFVSPLG--EVDVVAPETPKSATGLGITLHKPLRMYEVDLCGFKVYATSGTPSDTIYLAT 78 (266)
T ss_pred CeEEEEcCCCCCCHHHHHHHHHHHhCC--cEEEEccCCCCccccccccCCCCcEEEEeccCCcceEEeCCCHHHHHHHHH
Confidence 689999999999999999999999876 899999999999999999999999999987556678999999999999999
Q ss_pred hcccCCCCCcEEEecCCCCCCCccc-cccchhHHHHHHHHHcCCCEEEEeeecCC-C-C-CCCcccHHHHHHHHHHHHHH
Q 023840 95 SQALFPSVPDLVISGINMGSNCGYH-VVYSGTVAGAREAFFHGVPSVSISYDWVG-G-K-SNVNDYTLAAEACLPIINAI 170 (276)
Q Consensus 95 ~~~l~~~~PDLVVSGIN~G~N~G~~-v~ySGTVgAA~Ea~~~GiPaIAvS~~~~~-~-~-~~~~~~~~aa~~~~~li~~l 170 (276)
+. + +++|||||||||+|.|+|.+ ++||||||||+||+++||||||||+.+.. . . .+..+|+.+++++.++++++
T Consensus 79 ~~-l-~~~pDLViSGIN~G~NlG~d~v~ySGTVgAA~Ea~~~GIPsIAvS~~~~~~~~~~~~~~~~~~a~~~~~~lv~~l 156 (266)
T PRK13934 79 YG-L-GRKYDLVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPAVAYSAYVDDWEELLEDGEALEIMKAVVRATAEYV 156 (266)
T ss_pred Hh-c-cCCCCeEEecCccCCCCCcCcccccHhHHHHHHHHhcCCCEEEEecccCCcccccccchhHHHHHHHHHHHHHHH
Confidence 85 5 67899999999999999999 89999999999999999999999995421 1 0 11125888888887777765
Q ss_pred HHHHHhCCCCCCc-EEEecCCCCCCCCCCE--EEEecccccccceEEEeeecCCCceeeeeccCCCCCcccccCCCC
Q 023840 171 LAEIRNQTYPERC-FLNIDLPTDIPNNKGY--KLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTS 244 (276)
Q Consensus 171 ~~~~~~~~~p~~~-~LNVN~P~~~~~~~g~--~~tr~g~~~~~~~~~~~~~~~~G~~~yw~~t~~~~~~~~~~~~~~ 244 (276)
+ +..+|+++ +||||||.++. +|+ |+||||++.|.+.++++ .+|+|++|||.+....+ + .++||.+
T Consensus 157 ~----~~~~p~~~~~LNVN~P~~~~--~gi~~~~tr~g~r~y~~~~~~~-~dp~g~~~ywl~~~~~~-~-~~~tD~~ 224 (266)
T PRK13934 157 L----KRGMPKGVDVISVNFPRRLR--RGVKAKLVKAAKLRFAQQVERR-VDPRGRAYYWLYGTPLE-P-EPGTDVY 224 (266)
T ss_pred H----hcCCCCCCcEEEEecCCCCC--CCCceEEecCCccccCCceEEE-ECCCCCeEEEECCCccC-C-CCCCcHH
Confidence 5 45689996 99999998764 788 99999999999999887 59999999999732222 2 4566654
No 9
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=100.00 E-value=5.6e-66 Score=456.26 Aligned_cols=191 Identities=43% Similarity=0.675 Sum_probs=155.1
Q ss_pred CeEEEecCCCCCCcCHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeecc----CCCCeeEEecCChHHHH
Q 023840 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPAD----FDGVTAYAVSGTPADCA 90 (276)
Q Consensus 15 ~~ILlTNDDGi~spGi~aL~~aL~~~g~~~V~VVAP~~~qSg~g~sit~~~pl~v~~~~----~~g~~~~~v~GTPaDcV 90 (276)
|||||||||||+||||++|+++|++.| |+|+||||++||||+||++|+++|+++++.. ..+...|+|+|||+|||
T Consensus 1 M~ILlTNDDGi~a~Gi~aL~~~L~~~g-~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~~~v~GTPaDcv 79 (196)
T PF01975_consen 1 MRILLTNDDGIDAPGIRALAKALSALG-HDVVVVAPDSEQSGTGHSITLHKPLRVTEVEPGHDPGGVEAYAVSGTPADCV 79 (196)
T ss_dssp SEEEEE-SS-TTSHHHHHHHHHHTTTS-SEEEEEEESSSTTTSTTS--SSSEEEEEEEE-TTCCSTTEEEEESS-HHHHH
T ss_pred CeEEEEcCCCCCCHHHHHHHHHHHhcC-CeEEEEeCCCCCcCcceeecCCCCeEEEEEEecccCCCCCEEEEcCcHHHHH
Confidence 799999999999999999999998876 8999999999999999999999999997764 34577999999999999
Q ss_pred HHhhhcccCCCCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEeeecCCCCCCCcccHHHHHHHHHHHHHH
Q 023840 91 SLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAI 170 (276)
Q Consensus 91 ~~al~~~l~~~~PDLVVSGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS~~~~~~~~~~~~~~~aa~~~~~li~~l 170 (276)
++||++++.+.+|||||||||+|.|+|.+++||||||||+||+++||||||||++... .....+|+.+++++.++++++
T Consensus 80 ~~al~~~~~~~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~~~-~~~~~~~~~aa~~~~~~i~~~ 158 (196)
T PF01975_consen 80 KLALDGLLPDKKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDSDS-ESKDPDFETAARFAVKLIEKL 158 (196)
T ss_dssp HHHHHCTSTTSS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEESSS-T-SSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEeccccC-CCcHHHHHHHHHHHHHHHHHH
Confidence 9999974433469999999999999999999999999999999999999999998643 112347999999988888877
Q ss_pred HHHHHhCCCCCCcEEEecCCCCC-CCCCCEEEEecccccccc
Q 023840 171 LAEIRNQTYPERCFLNIDLPTDI-PNNKGYKLTKQGTSIFKM 211 (276)
Q Consensus 171 ~~~~~~~~~p~~~~LNVN~P~~~-~~~~g~~~tr~g~~~~~~ 211 (276)
+ +..+|++++||||||..+ .+.+|+|+||+|+++|++
T Consensus 159 ~----~~~~~~~~~lNVN~P~~~~~~~~g~~~t~~g~~~y~~ 196 (196)
T PF01975_consen 159 L----KNPLPPGVVLNVNFPSVPCEEIKGIKVTRLGRRRYKE 196 (196)
T ss_dssp H----HSGSSTTSEEEEEEESS-GGG-SEEEE-B--CCSCEE
T ss_pred h----hcCCCCCcEEEEEcCCCCcccCCCEEEEECCcceeCC
Confidence 6 455799999999999976 678999999999999864
No 10
>PLN02846 digalactosyldiacylglycerol synthase
Probab=89.67 E-value=2.2 Score=42.90 Aligned_cols=41 Identities=17% Similarity=0.098 Sum_probs=30.8
Q ss_pred CCCCeEEEecCC------CCCCcCHHHHHHHHHhcCCccEEEEeeCCC
Q 023840 12 DHKPTIMVTNDD------GIDAPGLRSLVRVLVSTNRYTVQVCAPDSE 53 (276)
Q Consensus 12 ~~~~~ILlTNDD------Gi~spGi~aL~~aL~~~g~~~V~VVAP~~~ 53 (276)
.++|||+|.-|= |. +-.+..+++.|.+.|+|+|+||||...
T Consensus 2 ~~~mrIaivTdt~lP~vnGv-a~s~~~~a~~L~~~G~heV~vvaP~~~ 48 (462)
T PLN02846 2 QKKQHIAIFTTASLPWMTGT-AVNPLFRAAYLAKDGDREVTLVIPWLS 48 (462)
T ss_pred CCCCEEEEEEcCCCCCCCCe-eccHHHHHHHHHhcCCcEEEEEecCCc
Confidence 356888888764 43 345666777999999679999999764
No 11
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=88.22 E-value=0.82 Score=43.30 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=27.1
Q ss_pred CeEEEecCCCC-CCcCHHHHHHHHHhcCCccEEEEeeCCC
Q 023840 15 PTIMVTNDDGI-DAPGLRSLVRVLVSTNRYTVQVCAPDSE 53 (276)
Q Consensus 15 ~~ILlTNDDGi-~spGi~aL~~aL~~~g~~~V~VVAP~~~ 53 (276)
||||++.=-+. +.--+.+|+++|++.| |+|+++++..-
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rG-h~V~~~t~~~~ 39 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAG-HEVRVATPPEF 39 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCC-CeEEEeeCHhH
Confidence 57887643222 1223567999999999 89999999864
No 12
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=85.94 E-value=2.2 Score=41.08 Aligned_cols=104 Identities=17% Similarity=0.121 Sum_probs=61.8
Q ss_pred CeEEEecCCCCCCcCHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccCCCCeeEE-ecCChHHHHHHh
Q 023840 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYA-VSGTPADCASLG 93 (276)
Q Consensus 15 ~~ILlTNDDGi~spGi~aL~~aL~~~g~~~V~VVAP~~~qSg~g~sit~~~pl~v~~~~~~g~~~~~-v~GTPaDcV~~a 93 (276)
|+|++.=..=-+..-.+.+.+.|++.| |+|+|.|-+.++ ...+-+ ...++ . ..+. -.+|+.+=....
T Consensus 1 MkIwiDi~~p~hvhfFk~~I~eL~~~G-heV~it~R~~~~-----~~~LL~---~yg~~--y-~~iG~~g~~~~~Kl~~~ 68 (335)
T PF04007_consen 1 MKIWIDITHPAHVHFFKNIIRELEKRG-HEVLITARDKDE-----TEELLD---LYGID--Y-IVIGKHGDSLYGKLLES 68 (335)
T ss_pred CeEEEECCCchHHHHHHHHHHHHHhCC-CEEEEEEeccch-----HHHHHH---HcCCC--e-EEEcCCCCCHHHHHHHH
Confidence 567776444445566788999999999 899999987632 111111 11111 0 0010 013444433222
Q ss_pred hhc------ccCCCCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEee
Q 023840 94 VSQ------ALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISY 144 (276)
Q Consensus 94 l~~------~l~~~~PDLVVSGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS~ 144 (276)
+.. .+...+||++||+- -+.|++-|...|+|+|+|.=
T Consensus 69 ~~R~~~l~~~~~~~~pDv~is~~--------------s~~a~~va~~lgiP~I~f~D 111 (335)
T PF04007_consen 69 IERQYKLLKLIKKFKPDVAISFG--------------SPEAARVAFGLGIPSIVFND 111 (335)
T ss_pred HHHHHHHHHHHHhhCCCEEEecC--------------cHHHHHHHHHhCCCeEEEec
Confidence 221 12235899999863 36789999999999999973
No 13
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=83.75 E-value=1.6 Score=41.12 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=59.8
Q ss_pred cCHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHHHhhhcccCCCCCcEEE
Q 023840 28 PGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVI 107 (276)
Q Consensus 28 pGi~aL~~aL~~~g~~~V~VVAP~~~qSg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al~~~l~~~~PDLVV 107 (276)
||--+|+++|+..| .+|++|......+............-....+. -...+.|.+-...-....+...+||++|
T Consensus 63 ~GA~aLa~aL~~lG-~~~~ivtd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~d~lI 136 (291)
T PF14336_consen 63 PGAAALARALQALG-KEVVIVTDERCAPVVKAAVRAAGLQGVDKVEI-----PPFFPDDFAQAFLEADGLLKEPRPDLLI 136 (291)
T ss_pred HHHHHHHHHHHHcC-CeEEEEECHHHHHHHHHHHHHHhhCccccccc-----ccccccchhhhHHHHhhccccCCCCEEE
Confidence 68999999999999 69999998887776665433211100000000 0022233333333333333445899999
Q ss_pred e----cCC--------CCCCCccc-cccchhHHHHHHHHHcCCCEEEEee
Q 023840 108 S----GIN--------MGSNCGYH-VVYSGTVAGAREAFFHGVPSVSISY 144 (276)
Q Consensus 108 S----GIN--------~G~N~G~~-v~ySGTVgAA~Ea~~~GiPaIAvS~ 144 (276)
| |.| .|.|+... .-...-+-.|.+ .|||.|++.=
T Consensus 137 aIERpGra~dG~Y~nmrG~~I~~~~a~~D~lf~~a~~---~gi~tigIGD 183 (291)
T PF14336_consen 137 AIERPGRAADGNYYNMRGEDISHLVAPLDDLFLAAKE---PGIPTIGIGD 183 (291)
T ss_pred EeCCcccCCCCCEecCcCCcCccccccHHHHHHHhhc---CCCCEEEECC
Confidence 8 555 33333321 112333344444 7999999974
No 14
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=81.23 E-value=11 Score=34.53 Aligned_cols=23 Identities=13% Similarity=0.004 Sum_probs=19.2
Q ss_pred CHHHHHHHHHhcCCccEEEEeeCC
Q 023840 29 GLRSLVRVLVSTNRYTVQVCAPDS 52 (276)
Q Consensus 29 Gi~aL~~aL~~~g~~~V~VVAP~~ 52 (276)
.+..|.++|.+.| |+|.|+++..
T Consensus 15 ~~~~la~~l~~~G-~ev~v~~~~~ 37 (350)
T cd03785 15 PALALAEELRERG-AEVLFLGTKR 37 (350)
T ss_pred HHHHHHHHHHhCC-CEEEEEECCC
Confidence 4558999999999 8999998864
No 15
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=80.95 E-value=9.8 Score=34.83 Aligned_cols=36 Identities=8% Similarity=0.066 Sum_probs=24.2
Q ss_pred eEEEe-cCCCCCCcCHHHHHHHHHhcCCccEEEEeeCC
Q 023840 16 TIMVT-NDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDS 52 (276)
Q Consensus 16 ~ILlT-NDDGi~spGi~aL~~aL~~~g~~~V~VVAP~~ 52 (276)
+|+++ =..|-+......|+++|++.| |+|.|+++..
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g-~eV~vv~~~~ 38 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRG-VEVLWLGTKR 38 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCC-CEEEEEeCCC
Confidence 45544 344433334457999999999 8999998643
No 16
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=80.85 E-value=25 Score=31.24 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=23.2
Q ss_pred CcCHHHHHHHHHhcCCccEEEEeeCCCCC
Q 023840 27 APGLRSLVRVLVSTNRYTVQVCAPDSEKS 55 (276)
Q Consensus 27 spGi~aL~~aL~~~g~~~V~VVAP~~~qS 55 (276)
...+..|+++|.+.| |+|.++.+.....
T Consensus 17 ~~~~~~l~~~L~~~g-~~v~~~~~~~~~~ 44 (364)
T cd03814 17 VRTLQRLVEHLRARG-HEVLVIAPGPFRE 44 (364)
T ss_pred ehHHHHHHHHHHHCC-CEEEEEeCCchhh
Confidence 357888999999999 8999999876543
No 17
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=79.74 E-value=12 Score=34.79 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=28.6
Q ss_pred CeEEEe-cCCCCCCcCHHHHHHHHHhcCCccEEEEeeCC
Q 023840 15 PTIMVT-NDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDS 52 (276)
Q Consensus 15 ~~ILlT-NDDGi~spGi~aL~~aL~~~g~~~V~VVAP~~ 52 (276)
|||+++ +=.|-+---...|+++|++.| |+|.++....
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g-~ev~vv~~~~ 39 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRG-WEVLYLGTAR 39 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCC-CEEEEEECCC
Confidence 788888 546655445668999999998 8999998754
No 18
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=79.01 E-value=18 Score=35.42 Aligned_cols=41 Identities=15% Similarity=0.175 Sum_probs=29.7
Q ss_pred CCCCeEEEecC-CCCCC-----cCHHHHHHHHHhcCCccEEEEeeCCC
Q 023840 12 DHKPTIMVTND-DGIDA-----PGLRSLVRVLVSTNRYTVQVCAPDSE 53 (276)
Q Consensus 12 ~~~~~ILlTND-DGi~s-----pGi~aL~~aL~~~g~~~V~VVAP~~~ 53 (276)
+++|||++..+ ....- .-+..|.+.|++.| |+|+|+++...
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G-~eV~vlt~~~~ 102 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMG-DEVLVVTTDEG 102 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCC-CeEEEEecCCC
Confidence 46799998865 22211 23677889999999 89999998754
No 19
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=78.41 E-value=4 Score=38.78 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCCccEEEEeeCCCC
Q 023840 30 LRSLVRVLVSTNRYTVQVCAPDSEK 54 (276)
Q Consensus 30 i~aL~~aL~~~g~~~V~VVAP~~~q 54 (276)
+-.|+++|++.| |+|+++.+....
T Consensus 12 ~l~lA~~L~~~G-h~V~~~~~~~~~ 35 (392)
T TIGR01426 12 TLGVVEELVARG-HRVTYATTEEFA 35 (392)
T ss_pred cHHHHHHHHhCC-CeEEEEeCHHHH
Confidence 346899999999 899999997754
No 20
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=78.12 E-value=7.5 Score=36.17 Aligned_cols=34 Identities=29% Similarity=0.377 Sum_probs=23.9
Q ss_pred cCCCCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEeee
Q 023840 98 LFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD 145 (276)
Q Consensus 98 l~~~~PDLVVSGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS~~ 145 (276)
+...+||||||-... + +.+.|...|||+|.+...
T Consensus 89 l~~~~pDlVi~d~~~----------~----~~~aA~~~~iP~i~i~~q 122 (321)
T TIGR00661 89 IREYNPDLIISDFEY----------S----TVVAAKLLKIPVICISNQ 122 (321)
T ss_pred HHhcCCCEEEECCch----------H----HHHHHHhcCCCEEEEecc
Confidence 344689999986322 1 155677899999999753
No 21
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=75.10 E-value=5.4 Score=31.88 Aligned_cols=42 Identities=24% Similarity=0.267 Sum_probs=29.0
Q ss_pred EEEecCCCCCCcC----HHHHHHHHHhcCCccEEEEeeCCCCCcCcc
Q 023840 17 IMVTNDDGIDAPG----LRSLVRVLVSTNRYTVQVCAPDSEKSAVSH 59 (276)
Q Consensus 17 ILlTNDDGi~spG----i~aL~~aL~~~g~~~V~VVAP~~~qSg~g~ 59 (276)
|||+|.-....-| +..|.++|++.| |+|.|++|..+..-...
T Consensus 1 ili~~~~~~~~GG~e~~~~~l~~~l~~~G-~~v~v~~~~~~~~~~~~ 46 (177)
T PF13439_consen 1 ILITNIFLPNIGGAERVVLNLARALAKRG-HEVTVVSPGVKDPIEEE 46 (177)
T ss_dssp -EEECC-TTSSSHHHHHHHHHHHHHHHTT--EEEEEESS-TTS-SST
T ss_pred CEEEEecCCCCChHHHHHHHHHHHHHHCC-CEEEEEEcCCCccchhh
Confidence 6888888777666 456889999999 89999998876555444
No 22
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=74.44 E-value=16 Score=28.82 Aligned_cols=101 Identities=12% Similarity=0.140 Sum_probs=55.0
Q ss_pred EEEecCCCCCCcCHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHH-Hhhh
Q 023840 17 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCAS-LGVS 95 (276)
Q Consensus 17 ILlTNDDGi~spGi~aL~~aL~~~g~~~V~VVAP~~~qSg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV~-~al~ 95 (276)
.+|+|.+. +-+.-+++.|++.| +||.|+++..+. .......-+.+.++..+ ..+ |..-.. ..+.
T Consensus 3 l~i~~~~~---~~~~~~~~~L~~~g-~~V~ii~~~~~~----~~~~~~~~i~~~~~~~~------~k~-~~~~~~~~~l~ 67 (139)
T PF13477_consen 3 LLIGNTPS---TFIYNLAKELKKRG-YDVHIITPRNDY----EKYEIIEGIKVIRLPSP------RKS-PLNYIKYFRLR 67 (139)
T ss_pred EEEecCcH---HHHHHHHHHHHHCC-CEEEEEEcCCCc----hhhhHhCCeEEEEecCC------CCc-cHHHHHHHHHH
Confidence 46778774 45788999999998 799999995443 11121222233332211 112 322222 2344
Q ss_pred cccCCCCCcEEEecCCCCCCCccccccc-hhHHHHHHHHHcC-CCEEEEe
Q 023840 96 QALFPSVPDLVISGINMGSNCGYHVVYS-GTVAGAREAFFHG-VPSVSIS 143 (276)
Q Consensus 96 ~~l~~~~PDLVVSGIN~G~N~G~~v~yS-GTVgAA~Ea~~~G-iPaIAvS 143 (276)
..+...+||+|.+-- ..+ |.+| ...+.+.| +|-|.-.
T Consensus 68 k~ik~~~~DvIh~h~----------~~~~~~~~-~l~~~~~~~~~~i~~~ 106 (139)
T PF13477_consen 68 KIIKKEKPDVIHCHT----------PSPYGLFA-MLAKKLLKNKKVIYTV 106 (139)
T ss_pred HHhccCCCCEEEEec----------CChHHHHH-HHHHHHcCCCCEEEEe
Confidence 335556899996421 112 3333 33456778 8888433
No 23
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=72.63 E-value=6.4 Score=35.54 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=27.6
Q ss_pred CeEEEecCCCC-C--CcCHHHHHHHHHhcCCccEEEEeeCCC
Q 023840 15 PTIMVTNDDGI-D--APGLRSLVRVLVSTNRYTVQVCAPDSE 53 (276)
Q Consensus 15 ~~ILlTNDDGi-~--spGi~aL~~aL~~~g~~~V~VVAP~~~ 53 (276)
||||+-|+... . ..-...|.++|.+.| |+|+|+.+...
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G-~~v~v~~~~~~ 41 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAG-VDSTMLVQEKK 41 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcC-CceeEEEeecc
Confidence 57887776532 2 223667889999999 89999988765
No 24
>PRK10307 putative glycosyl transferase; Provisional
Probab=71.44 E-value=6.9 Score=37.21 Aligned_cols=36 Identities=14% Similarity=0.022 Sum_probs=28.1
Q ss_pred CeEEEecCCCCCCc-----CHHHHHHHHHhcCCccEEEEeeC
Q 023840 15 PTIMVTNDDGIDAP-----GLRSLVRVLVSTNRYTVQVCAPD 51 (276)
Q Consensus 15 ~~ILlTNDDGi~sp-----Gi~aL~~aL~~~g~~~V~VVAP~ 51 (276)
||||+.++.-..-. -+..|+++|.+.| |+|.|++|.
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G-~~V~vit~~ 41 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARG-HEVRVITAP 41 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCC-CeEEEEecC
Confidence 68888887643222 3678999999999 899999976
No 25
>PF07075 DUF1343: Protein of unknown function (DUF1343); InterPro: IPR008302 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=70.75 E-value=17 Score=35.63 Aligned_cols=111 Identities=25% Similarity=0.363 Sum_probs=75.4
Q ss_pred EEEecCCCCCCcCHHHHHHHHHhc-CCccEEEEeeCCCCCcCcccc-cCCCCeeeeeccCCCCeeEEecCC---hHHHHH
Q 023840 17 IMVTNDDGIDAPGLRSLVRVLVST-NRYTVQVCAPDSEKSAVSHSI-TWRHPISARPADFDGVTAYAVSGT---PADCAS 91 (276)
Q Consensus 17 ILlTNDDGi~spGi~aL~~aL~~~-g~~~V~VVAP~~~qSg~g~si-t~~~pl~v~~~~~~g~~~~~v~GT---PaDcV~ 91 (276)
-||||-=|+++.+ +..++.|.+. |..=+.+.+|++.-.|.-.+- +...- ++. ..|-++|+.-|. |..-..
T Consensus 2 gLvtN~tgv~~~~-~~~~d~L~~~~~v~l~alF~PEHG~~G~~~ag~~v~~~--~D~--~tglpVySLYG~~~~Pt~~mL 76 (365)
T PF07075_consen 2 GLVTNQTGVDSDG-RHTIDVLAAAPGVNLVALFGPEHGFRGDAQAGEKVEDY--IDP--RTGLPVYSLYGKTRKPTPEML 76 (365)
T ss_pred EEEecccccCCCC-cCHHHHHhhCCCCCEEEEecCCCCCccchhcCCcCCCC--cCC--CCCCeEEECCCCCCCCCHHHH
Confidence 3899999999766 5567888887 532357789998777665431 11111 011 135667776665 887777
Q ss_pred HhhhcccCCCCCcEEEecCCCCCCCcc-ccccchhHHHHHHHH-HcCCCEEEEee
Q 023840 92 LGVSQALFPSVPDLVISGINMGSNCGY-HVVYSGTVAGAREAF-FHGVPSVSISY 144 (276)
Q Consensus 92 ~al~~~l~~~~PDLVVSGIN~G~N~G~-~v~ySGTVgAA~Ea~-~~GiPaIAvS~ 144 (276)
-++|.+++ || ..+|. ..+|--|++=+|||+ ..|+|.|-+=.
T Consensus 77 ~~vDvlvf----Di--------QDvG~R~YTYi~Tl~~~MeAaa~~g~~vvVLDR 119 (365)
T PF07075_consen 77 KGVDVLVF----DI--------QDVGVRFYTYISTLYYVMEAAAENGKPVVVLDR 119 (365)
T ss_pred hCCCEEEE----eC--------ccCCchHHHHHHHHHHHHHHHHHhCCeEEEEeC
Confidence 77775443 33 45675 579999999999997 58999998754
No 26
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=66.49 E-value=13 Score=33.33 Aligned_cols=40 Identities=23% Similarity=0.208 Sum_probs=30.0
Q ss_pred CeEEEecCCCCC----Cc-C----HHHHHHHHHhcCCccEEEEeeCCCCC
Q 023840 15 PTIMVTNDDGID----AP-G----LRSLVRVLVSTNRYTVQVCAPDSEKS 55 (276)
Q Consensus 15 ~~ILlTNDDGi~----sp-G----i~aL~~aL~~~g~~~V~VVAP~~~qS 55 (276)
|+||+..+.-+. .- | +..|.++|.+.| |+|.++.|....+
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g-~~V~v~~~~~~~~ 49 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARG-HEVTLFASGDSKT 49 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcC-ceEEEEecCCCCc
Confidence 688888876432 22 2 788999999998 8999999877543
No 27
>PRK15405 ethanolamine utilization protein EutL; Provisional
Probab=61.95 E-value=44 Score=30.63 Aligned_cols=102 Identities=22% Similarity=0.196 Sum_probs=68.6
Q ss_pred cCHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCC-CCe----------eeee--------c---------cCCCCee
Q 023840 28 PGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWR-HPI----------SARP--------A---------DFDGVTA 79 (276)
Q Consensus 28 pGi~aL~~aL~~~g~~~V~VVAP~~~qSg~g~sit~~-~pl----------~v~~--------~---------~~~g~~~ 79 (276)
++|.++=+++|+. +|-|+-+.+-.-|.||+-|-- ..+ .|++ + ..+|...
T Consensus 46 ~~i~AaDeA~KAA---nVevv~a~~~~gGaghg~~~~~G~viiIi~G~dvsdVrsAveaa~~~i~~~~~f~~~n~~g~~~ 122 (217)
T PRK15405 46 VTYTALDEATKQA---MVEVVYARSFYAGAAHASTPLAGEVIGILAGPNPAEVRAGLDAMVAFIENGAAFQSANDDDSTA 122 (217)
T ss_pred hHHhHHHHHHhhc---ceEEEEEEeeccccccCCCCCCccEEEEEeCCCHHHHHHHHHHHHHHHHhhhceEeeCCCCCEE
Confidence 8999988888863 799999999988988876321 111 0000 0 0012111
Q ss_pred E-------------------------EecCChHHHHHHhhhcccCCCCCcEE-EecCCCCCCCccccccchhHHHHHHHH
Q 023840 80 Y-------------------------AVSGTPADCASLGVSQALFPSVPDLV-ISGINMGSNCGYHVVYSGTVAGAREAF 133 (276)
Q Consensus 80 ~-------------------------~v~GTPaDcV~~al~~~l~~~~PDLV-VSGIN~G~N~G~~v~ySGTVgAA~Ea~ 133 (276)
| ++=|-| ---.+++|..+.-...++| ..||..|.|-|. .+.||+-+|.++|+
T Consensus 123 ~~a~~~aRag~~l~k~~g~~~G~a~~~li~~P-~~~~~~~D~AlKaA~V~~~~~~~P~~~t~f~~-~~ltG~~~A~r~A~ 200 (217)
T PRK15405 123 FFAHVVSRTGSYLSKTAGIAEGEPLAYLIAPP-LEAMYGIDAALKAADVQLVTFVGPPSETNFGG-ALLTGSQSACKAAC 200 (217)
T ss_pred EEEEEcccHHHHHHHHcCCCCCceeEEEecCc-HHHHHHHHHHHhhcCceEEEEeCCCCCceecC-eeEEeCHHHHHHHH
Confidence 2 234778 4456677766655578886 899999988887 78899999988886
Q ss_pred H
Q 023840 134 F 134 (276)
Q Consensus 134 ~ 134 (276)
.
T Consensus 201 ~ 201 (217)
T PRK15405 201 N 201 (217)
T ss_pred H
Confidence 3
No 28
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=61.26 E-value=8.7 Score=37.06 Aligned_cols=19 Identities=47% Similarity=0.679 Sum_probs=16.1
Q ss_pred chhHHHHHHHHHcCCCEEEEe
Q 023840 123 SGTVAGAREAFFHGVPSVSIS 143 (276)
Q Consensus 123 SGTVgAA~Ea~~~GiPaIAvS 143 (276)
+||+ |+||++.|+|+|.+.
T Consensus 256 ggTM--a~EAA~LGtPaIs~~ 274 (335)
T PF04007_consen 256 GGTM--AREAALLGTPAISCF 274 (335)
T ss_pred CcHH--HHHHHHhCCCEEEec
Confidence 7887 569999999999753
No 29
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=59.69 E-value=53 Score=31.36 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=17.4
Q ss_pred CCcCHHHHHHHHHhcCCccEEEEe
Q 023840 26 DAPGLRSLVRVLVSTNRYTVQVCA 49 (276)
Q Consensus 26 ~spGi~aL~~aL~~~g~~~V~VVA 49 (276)
-.|+| |++++|++.| |+|..++
T Consensus 15 i~Pal-a~a~~l~~~g-~~v~~vg 36 (352)
T PRK12446 15 VTPNL-AIIPYLKEDN-WDISYIG 36 (352)
T ss_pred HHHHH-HHHHHHHhCC-CEEEEEE
Confidence 35666 4789999888 8999997
No 30
>COG0726 CDA1 Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]
Probab=59.55 E-value=17 Score=31.59 Aligned_cols=36 Identities=19% Similarity=0.130 Sum_probs=29.6
Q ss_pred CCeEEEecCCCCCCcCHHHHHHHHHhcCCc-cEEEEe
Q 023840 14 KPTIMVTNDDGIDAPGLRSLVRVLVSTNRY-TVQVCA 49 (276)
Q Consensus 14 ~~~ILlTNDDGi~spGi~aL~~aL~~~g~~-~V~VVA 49 (276)
+..|.||-|||+...+...+.+.|++.+.. ..+|+.
T Consensus 64 ~k~v~lTFDDg~~~~~~~~il~iL~k~~i~ATfFv~g 100 (267)
T COG0726 64 GKAVALTFDDGPLDGNTPRILPLLKKYGIKATFFVVG 100 (267)
T ss_pred CCeEEEEeecCCCCCCcHHHHHHHHHcCCceEEEEeh
Confidence 467999999999998999999999998854 344444
No 31
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=58.69 E-value=55 Score=28.37 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=25.5
Q ss_pred eEEEecCCCCCCcC----HHHHHHHHHhcCCccEEEEeeCCCC
Q 023840 16 TIMVTNDDGIDAPG----LRSLVRVLVSTNRYTVQVCAPDSEK 54 (276)
Q Consensus 16 ~ILlTNDDGi~spG----i~aL~~aL~~~g~~~V~VVAP~~~q 54 (276)
|||+..+.-...-| +..|+++|++.| |+|.++.+....
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g-~~v~v~~~~~~~ 42 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKG-HEVTIISLDKGE 42 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCC-CeEEEEecCCCC
Confidence 35555544332333 455788888888 899999987765
No 32
>PRK09864 putative peptidase; Provisional
Probab=56.38 E-value=44 Score=32.54 Aligned_cols=134 Identities=12% Similarity=0.020 Sum_probs=74.9
Q ss_pred cCHHHHHHHHHhcC--CccEEEEeeCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHHHhhhcc---cCCCC
Q 023840 28 PGLRSLVRVLVSTN--RYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQA---LFPSV 102 (276)
Q Consensus 28 pGi~aL~~aL~~~g--~~~V~VVAP~~~qSg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al~~~---l~~~~ 102 (276)
-|..+|.++|+... ..+|+.++-..|-=|...+.+... .++ ..-+.++|.||++.+--.-... -..+.
T Consensus 178 ~g~~~lle~l~~l~~~~~~vy~v~TvQEEvGlrGA~~aa~-----~i~--PDiaIavDvt~~~d~p~~~~~~~~~~lG~G 250 (356)
T PRK09864 178 IGCAMMAELLQTVNNPEITLYGVGSVEEEVGLRGAQTSAE-----HIK--PDVVIVLDTAVAGDVPGIDNIKYPLKLGQG 250 (356)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEEEcchhcchHHHHHHHh-----cCC--CCEEEEEecccCCCCCCCcccccccccCCC
Confidence 36777777776653 257888888777777655544322 121 2347889999865432111100 01234
Q ss_pred CcEEEe--cCCCC-------------CCCcccc-cc--chhHHHHHHHHHcCCCEEEEeeecCCCC-----CCCcccHHH
Q 023840 103 PDLVIS--GINMG-------------SNCGYHV-VY--SGTVAGAREAFFHGVPSVSISYDWVGGK-----SNVNDYTLA 159 (276)
Q Consensus 103 PDLVVS--GIN~G-------------~N~G~~v-~y--SGTVgAA~Ea~~~GiPaIAvS~~~~~~~-----~~~~~~~~a 159 (276)
|=|.+- |.+.- .|+-... .. .||=|+|+.-...|+|++.+|...+--. -+..|++.+
T Consensus 251 p~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~~~~~~ggTDa~~i~~~~~Gvpt~~isiP~RY~Hs~~e~~~~~D~e~~ 330 (356)
T PRK09864 251 PGLMLFDKRYFPNQKLVAALKSCAAHNDLPLQFSTMKTGATDGGRYNVMGGGRPVVALCLPTRYLHANSGMISKADYDAL 330 (356)
T ss_pred CeEEEccCCccCCHHHHHHHHHHHHHcCCCceEEEcCCCCchHHHHHHhCCCCcEEEEeeccCcCCCcceEeEHHHHHHH
Confidence 655332 33322 1333332 22 3899999999899999999998643211 112456665
Q ss_pred HHHHHHHHH
Q 023840 160 AEACLPIIN 168 (276)
Q Consensus 160 a~~~~~li~ 168 (276)
.++...+++
T Consensus 331 ~~Ll~~~~~ 339 (356)
T PRK09864 331 LTLIRDFLT 339 (356)
T ss_pred HHHHHHHHH
Confidence 555444433
No 33
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=55.84 E-value=34 Score=33.16 Aligned_cols=133 Identities=21% Similarity=0.117 Sum_probs=72.7
Q ss_pred cCHHHHHHHHHhcC----CccEEEEeeCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHHHhhhcccCCCCC
Q 023840 28 PGLRSLVRVLVSTN----RYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVP 103 (276)
Q Consensus 28 pGi~aL~~aL~~~g----~~~V~VVAP~~~qSg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al~~~l~~~~P 103 (276)
.|..+|.++|+... ..+|+.++--.|.=|...+-+... .++ ...+.++|.||+....---...| .+.|
T Consensus 181 ~g~a~l~e~l~~l~~~~~~~~l~~~~tvqEEvG~rGA~~aa~-----~i~--pD~aI~vDv~~~~d~~~~~~~~l-g~Gp 252 (350)
T TIGR03107 181 YGVLMILELLESLKDQELPNTLIAGANVQEEVGLRGAHVSTT-----KFN--PDIFFAVDCSPAGDIYGDQGGKL-GEGT 252 (350)
T ss_pred HHHHHHHHHHHHhhhcCCCceEEEEEEChhhcCchhhhhHHh-----hCC--CCEEEEEecCCcCCCCCCCcccc-CCCc
Confidence 35666777666542 247888888777777655544321 222 23577888888643211000012 3346
Q ss_pred cEEEe--cCCCCC-------------CCccccccc--hhHHHHHHHHHcCCCEEEEeeecCCCC-----CCCcccHHHHH
Q 023840 104 DLVIS--GINMGS-------------NCGYHVVYS--GTVAGAREAFFHGVPSVSISYDWVGGK-----SNVNDYTLAAE 161 (276)
Q Consensus 104 DLVVS--GIN~G~-------------N~G~~v~yS--GTVgAA~Ea~~~GiPaIAvS~~~~~~~-----~~~~~~~~aa~ 161 (276)
=|.+. |.+.-+ |+-.....+ ||=|+|..=+..|+|++.+|...+.-. -+..|++.+++
T Consensus 253 ~i~~~D~~~i~~~~l~~~l~~~A~~~~I~~Q~~~~~gGtDa~~~~~~~~Gvpt~~i~ip~Ry~Hs~~e~i~~~D~~~~~~ 332 (350)
T TIGR03107 253 LLRFFDPGHIMLPRMKDFLLTTAEEAGIKYQYYVAKGGTDAGAAHLKNSGVPSTTIGVCARYIHSHQTLYSIDDFLAAQA 332 (350)
T ss_pred eEEEecCCCCCCHHHHHHHHHHHHHcCCCcEEecCCCCchHHHHHHhCCCCcEEEEccCcccccChhheeeHHHHHHHHH
Confidence 55332 332221 222333333 798998888889999999998643211 12245666665
Q ss_pred HHHHHHH
Q 023840 162 ACLPIIN 168 (276)
Q Consensus 162 ~~~~li~ 168 (276)
+...+++
T Consensus 333 Ll~~~i~ 339 (350)
T TIGR03107 333 FLQAIVK 339 (350)
T ss_pred HHHHHHH
Confidence 5544443
No 34
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=53.46 E-value=15 Score=28.74 Aligned_cols=97 Identities=18% Similarity=0.178 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHHHhhhccc--CCCCCcEEE
Q 023840 30 LRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQAL--FPSVPDLVI 107 (276)
Q Consensus 30 i~aL~~aL~~~g~~~V~VVAP~~~qSg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al~~~l--~~~~PDLVV 107 (276)
+..|+++|.+.| |+|.|++|..+...-. .....+++..+...... +.. . ... ....+...+ ...+||+|.
T Consensus 7 ~~~l~~~L~~~G-~~V~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~-~-~~~-~~~~~~~~l~~~~~~~Dvv~ 78 (160)
T PF13579_consen 7 VRELARALAARG-HEVTVVTPQPDPEDDE---EEEDGVRVHRLPLPRRP-WPL-R-LLR-FLRRLRRLLAARRERPDVVH 78 (160)
T ss_dssp HHHHHHHHHHTT--EEEEEEE---GGG-S---EEETTEEEEEE--S-SS-SGG-G-HCC-HHHHHHHHCHHCT---SEEE
T ss_pred HHHHHHHHHHCC-CEEEEEecCCCCcccc---cccCCceEEeccCCccc-hhh-h-hHH-HHHHHHHHHhhhccCCeEEE
Confidence 567999999999 8999999877665211 11223444443321111 000 0 011 123344334 456899997
Q ss_pred ecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEeee
Q 023840 108 SGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD 145 (276)
Q Consensus 108 SGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS~~ 145 (276)
.- + ..++.++. ......|+|-|.-..+
T Consensus 79 ~~---------~-~~~~~~~~-~~~~~~~~p~v~~~h~ 105 (160)
T PF13579_consen 79 AH---------S-PTAGLVAA-LARRRRGIPLVVTVHG 105 (160)
T ss_dssp EE---------H-HHHHHHHH-HHHHHHT--EEEE-SS
T ss_pred ec---------c-cchhHHHH-HHHHccCCcEEEEECC
Confidence 41 1 12333332 2223679999876654
No 35
>PRK06849 hypothetical protein; Provisional
Probab=51.87 E-value=23 Score=33.94 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=27.9
Q ss_pred CCCCeEEEecCCCCCCcCHHHHHHHHHhcCCccEEEEeeC
Q 023840 12 DHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPD 51 (276)
Q Consensus 12 ~~~~~ILlTNDDGi~spGi~aL~~aL~~~g~~~V~VVAP~ 51 (276)
+.+++|||| |-.++.-..++++|.++| ++|+++...
T Consensus 2 ~~~~~VLI~---G~~~~~~l~iar~l~~~G-~~Vi~~d~~ 37 (389)
T PRK06849 2 NTKKTVLIT---GARAPAALELARLFHNAG-HTVILADSL 37 (389)
T ss_pred CCCCEEEEe---CCCcHHHHHHHHHHHHCC-CEEEEEeCC
Confidence 457899999 555555566899999999 799988554
No 36
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=51.28 E-value=72 Score=32.28 Aligned_cols=102 Identities=12% Similarity=0.092 Sum_probs=59.6
Q ss_pred cCHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeecc--CCCCeeEEecC-ChHHHHHHhhhcccCCCCCc
Q 023840 28 PGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPAD--FDGVTAYAVSG-TPADCASLGVSQALFPSVPD 104 (276)
Q Consensus 28 pGi~aL~~aL~~~g~~~V~VVAP~~~qSg~g~sit~~~pl~v~~~~--~~g~~~~~v~G-TPaDcV~~al~~~l~~~~PD 104 (276)
+-+..+++.|.++| .+++++=..+ ||+.....- ++++. .++..+.+=++ |+..+ ...++ -..|
T Consensus 224 ~~~~~ra~~Lv~aG-Vd~i~~D~a~-----g~~~~~~~~--i~~i~~~~~~~~vi~g~~~t~~~~-~~l~~-----~G~d 289 (475)
T TIGR01303 224 GDVGGKAKALLDAG-VDVLVIDTAH-----GHQVKMISA--IKAVRALDLGVPIVAGNVVSAEGV-RDLLE-----AGAN 289 (475)
T ss_pred ccHHHHHHHHHHhC-CCEEEEeCCC-----CCcHHHHHH--HHHHHHHCCCCeEEEeccCCHHHH-HHHHH-----hCCC
Confidence 45667888888888 4776663322 554333221 11221 23344444333 44443 33333 2579
Q ss_pred EEEecCCCCCCCccccccc---hhHHHHHHH----HHcCCCEEEEe
Q 023840 105 LVISGINMGSNCGYHVVYS---GTVAGAREA----FFHGVPSVSIS 143 (276)
Q Consensus 105 LVVSGIN~G~N~G~~v~yS---GTVgAA~Ea----~~~GiPaIAvS 143 (276)
.|--|+--|.|+.+..+.- .|+.|-+++ ...|+|.||=-
T Consensus 290 ~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadG 335 (475)
T TIGR01303 290 IIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADG 335 (475)
T ss_pred EEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeC
Confidence 9999999999997654322 377776666 46799999743
No 37
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=49.33 E-value=15 Score=29.25 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=18.3
Q ss_pred HHHHHHHHhcCCccEEEEeeCCCC
Q 023840 31 RSLVRVLVSTNRYTVQVCAPDSEK 54 (276)
Q Consensus 31 ~aL~~aL~~~g~~~V~VVAP~~~q 54 (276)
-+|.++|++.| |||.++++..-.
T Consensus 16 lala~~L~~rG-h~V~~~~~~~~~ 38 (139)
T PF03033_consen 16 LALARALRRRG-HEVRLATPPDFR 38 (139)
T ss_dssp HHHHHHHHHTT--EEEEEETGGGH
T ss_pred HHHHHHHhccC-CeEEEeecccce
Confidence 47999999999 899999886543
No 38
>PF01205 UPF0029: Uncharacterized protein family UPF0029; InterPro: IPR001498 The Impact protein is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. This entry represents the N-terminal domain of the Impact proteins.; PDB: 1VI7_A 2CVE_A.
Probab=49.19 E-value=22 Score=28.96 Aligned_cols=32 Identities=31% Similarity=0.261 Sum_probs=23.7
Q ss_pred EEEecCCCCCC--cCHHHHHHHHHhcCCccEEEEe
Q 023840 17 IMVTNDDGIDA--PGLRSLVRVLVSTNRYTVQVCA 49 (276)
Q Consensus 17 ILlTNDDGi~s--pGi~aL~~aL~~~g~~~V~VVA 49 (276)
+-=.+|||-.+ .|...| +.|+..+..||.||.
T Consensus 50 ~~~~~DDGEp~gtAG~piL-~~L~~~~l~nv~VVV 83 (110)
T PF01205_consen 50 IEGFSDDGEPGGTAGKPIL-EVLEHNGLTNVLVVV 83 (110)
T ss_dssp EEEEE-TTSSTTSSCHHHH-HHHHHCTB-SEEEEE
T ss_pred eecccCCCCCCCCccHHHH-HHHHhCCcCCEEEEE
Confidence 44568999998 998865 889888888987664
No 39
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=48.18 E-value=96 Score=28.22 Aligned_cols=33 Identities=12% Similarity=0.017 Sum_probs=25.3
Q ss_pred EecCCCCCCcCHHHHHHHHHhcCCccEEEEeeCC
Q 023840 19 VTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDS 52 (276)
Q Consensus 19 lTNDDGi~spGi~aL~~aL~~~g~~~V~VVAP~~ 52 (276)
.+++-|=...-+..|++.|.+.| |+|.|+....
T Consensus 7 ~~p~~gG~~~~~~~la~~L~~~G-~~v~v~~~~~ 39 (371)
T cd04962 7 CYPTYGGSGVVATELGKALARRG-HEVHFITSSR 39 (371)
T ss_pred EEeCCCCccchHHHHHHHHHhcC-CceEEEecCC
Confidence 34455545567888999999999 8999998754
No 40
>PRK15415 propanediol utilization protein PduB; Provisional
Probab=48.18 E-value=19 Score=33.95 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=45.3
Q ss_pred EecCChHHHHHHhhhcccCCCCCcEE-EecCCCCCCCccc--cccchhHHHHHHHHHc
Q 023840 81 AVSGTPADCASLGVSQALFPSVPDLV-ISGINMGSNCGYH--VVYSGTVAGAREAFFH 135 (276)
Q Consensus 81 ~v~GTPaDcV~~al~~~l~~~~PDLV-VSGIN~G~N~G~~--v~ySGTVgAA~Ea~~~ 135 (276)
.+.+.|+-....+.|..+.-...+|+ +..|..|.++|-- ++.+|.++|.++|...
T Consensus 185 iie~~p~a~gi~aaD~AlKaA~Velv~~~~p~~gt~~~Gk~~~~itGDvsAV~~Av~A 242 (266)
T PRK15415 185 IIVGAPAGIGVVMADTALKSANVDVVAYSSPAHGTSFSNEVILTISGDSGAVRQAVIA 242 (266)
T ss_pred EEEcCcHHHHHHHHHHHHhhcCeeEEEEEcCccccccCCeEEEEEEecHHHHHHHHHH
Confidence 36799999899999976655678998 7889999999853 6789999999988743
No 41
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=47.37 E-value=1.1e+02 Score=30.08 Aligned_cols=71 Identities=23% Similarity=0.174 Sum_probs=42.9
Q ss_pred CCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEeeecCCC---------------CCCCcccHHHHHHHHHH
Q 023840 102 VPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGG---------------KSNVNDYTLAAEACLPI 166 (276)
Q Consensus 102 ~PDLVVSGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS~~~~~~---------------~~~~~~~~~aa~~~~~l 166 (276)
.-||||.| +|.=-.....=....+.|+.|..+|+|.|+++-....+ .+.+.+.+.+-+.+.+.
T Consensus 283 ~ADlVITG--EG~~D~Qtl~GK~p~~Va~~A~~~~vPviai~G~v~~~~~~~~~~g~~a~~~i~~~~~~l~~a~~~~~~~ 360 (375)
T TIGR00045 283 DADLVITG--EGRLDRQSLMGKAPVGVAKRAKKYGVPVIAIAGSLGDGVDVLPQHGIDAAFSILPSPMPLEDALQNASTN 360 (375)
T ss_pred CCCEEEEC--CCcccccccCCchHHHHHHHHHHhCCeEEEEecccCCChHHHHhcCccEEEEcCCCCCCHHHHHHHHHHH
Confidence 58999998 33222222233446799999999999999997642111 11234566665555555
Q ss_pred HHHHHHHH
Q 023840 167 INAILAEI 174 (276)
Q Consensus 167 i~~l~~~~ 174 (276)
+++..+++
T Consensus 361 l~~~~~~~ 368 (375)
T TIGR00045 361 LERTAENI 368 (375)
T ss_pred HHHHHHHH
Confidence 55554443
No 42
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=45.78 E-value=25 Score=32.63 Aligned_cols=37 Identities=16% Similarity=0.106 Sum_probs=26.2
Q ss_pred CeEEEe-cCCCCC--CcCHHHHHHHHHhcCCccEEEEeeCC
Q 023840 15 PTIMVT-NDDGID--APGLRSLVRVLVSTNRYTVQVCAPDS 52 (276)
Q Consensus 15 ~~ILlT-NDDGi~--spGi~aL~~aL~~~g~~~V~VVAP~~ 52 (276)
|+||+- ++.+.. ..-+..|+++|.+.| |+|.|+++..
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G-~~V~v~~~~~ 40 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRG-HEVTIYTSHH 40 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCC-CeEEEEcCCC
Confidence 466655 454432 234678999999999 8999999753
No 43
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=45.31 E-value=28 Score=31.07 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=22.5
Q ss_pred CCCCCcCHHHHHHHHHhcCCccEEEEeeCCCC
Q 023840 23 DGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEK 54 (276)
Q Consensus 23 DGi~spGi~aL~~aL~~~g~~~V~VVAP~~~q 54 (276)
+|..-.=+..-++.|.++| ++|.++.|....
T Consensus 18 ~G~~~~E~~~p~~~l~~aG-~~V~~as~~g~~ 48 (221)
T cd03141 18 TGLWLEELAHPYDVFTEAG-YEVDFASPKGGK 48 (221)
T ss_pred CccCHHHHHHHHHHHHHCC-CeEEEECCCCCC
Confidence 3443334556688999999 799999997654
No 44
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=44.60 E-value=2.1e+02 Score=24.85 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=22.8
Q ss_pred cCHHHHHHHHHhcCCccEEEEeeCCCCCcC
Q 023840 28 PGLRSLVRVLVSTNRYTVQVCAPDSEKSAV 57 (276)
Q Consensus 28 pGi~aL~~aL~~~g~~~V~VVAP~~~qSg~ 57 (276)
.-++.++++|++.| |+|.|+.+.......
T Consensus 18 ~~~~~~~~~l~~~g-~~v~v~~~~~~~~~~ 46 (377)
T cd03798 18 IFVKELARALAKRG-VEVTVLAPGPWGPKL 46 (377)
T ss_pred HHHHHHHHHHHHCC-CceEEEecCCCCCCc
Confidence 34778999999888 799999987765443
No 45
>PRK10342 glycerate kinase I; Provisional
Probab=44.52 E-value=1.5e+02 Score=29.45 Aligned_cols=42 Identities=21% Similarity=0.063 Sum_probs=29.6
Q ss_pred CCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEeee
Q 023840 102 VPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD 145 (276)
Q Consensus 102 ~PDLVVSGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS~~ 145 (276)
.-||||.| +|.=-.....=-..+|-|+.|..+|+|.||++-.
T Consensus 284 ~ADLVITG--EG~~D~QTl~GK~p~gVa~~A~~~~vPviai~G~ 325 (381)
T PRK10342 284 DCTLVITG--EGRIDSQSIHGKVPIGVANVAKKYHKPVIGIAGS 325 (381)
T ss_pred cCCEEEEC--CCcCcccccCCccHHHHHHHHHHhCCCEEEEecc
Confidence 57999998 3332222222234669999999999999999764
No 46
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=44.33 E-value=37 Score=27.64 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=23.5
Q ss_pred eEEEecCCCCCCcCHHHHHHHHHhcCCccEEEEeeC
Q 023840 16 TIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPD 51 (276)
Q Consensus 16 ~ILlTNDDGi~spGi~aL~~aL~~~g~~~V~VVAP~ 51 (276)
-||+|.|- .+..+.+.|++.| .+|.|+++.
T Consensus 103 ivLvSgD~-----Df~~~i~~lr~~G-~~V~v~~~~ 132 (149)
T cd06167 103 IVLVSGDS-----DFVPLVERLRELG-KRVIVVGFE 132 (149)
T ss_pred EEEEECCc-----cHHHHHHHHHHcC-CEEEEEccC
Confidence 37888765 5556778888888 599999998
No 47
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.75 E-value=16 Score=35.42 Aligned_cols=22 Identities=41% Similarity=0.471 Sum_probs=18.5
Q ss_pred ccchhHHHHHHHHHcCCCEEEEee
Q 023840 121 VYSGTVAGAREAFFHGVPSVSISY 144 (276)
Q Consensus 121 ~ySGTVgAA~Ea~~~GiPaIAvS~ 144 (276)
.-|||+ |+||++.|+|||+++-
T Consensus 258 g~ggTM--arEaAlLGtpaIs~~p 279 (346)
T COG1817 258 GAGGTM--AREAALLGTPAISCYP 279 (346)
T ss_pred cCCchH--HHHHHHhCCceEEecC
Confidence 347887 6899999999998874
No 48
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=42.52 E-value=28 Score=34.91 Aligned_cols=44 Identities=30% Similarity=0.383 Sum_probs=35.7
Q ss_pred cCCCCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEee
Q 023840 98 LFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISY 144 (276)
Q Consensus 98 l~~~~PDLVVSGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS~ 144 (276)
+.+.+||+||-|| ..|.|..=.-.|||+.|.+. ..|||+++-=+
T Consensus 72 v~k~~pDv~iaGP--aFNagrYG~acg~va~aV~e-~~~IP~vt~My 115 (431)
T TIGR01918 72 LKDKEPDIFIAGP--AFNAGRYGVACGEICKVVQD-KLNVPAVTSMY 115 (431)
T ss_pred HHhcCCCEEEEcC--ccCCccHHHHHHHHHHHHHH-hhCCCeEEEec
Confidence 4455899999998 46888887888999998776 67999998654
No 49
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=42.37 E-value=28 Score=34.90 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=35.6
Q ss_pred cCCCCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEee
Q 023840 98 LFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISY 144 (276)
Q Consensus 98 l~~~~PDLVVSGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS~ 144 (276)
+.+.+||+||-|| ..|.|..=.-.|||+.|.+. ..|||+++-=+
T Consensus 72 v~k~~pDv~iaGP--aFNagrYG~acg~va~aV~e-~~~IP~vtaMy 115 (431)
T TIGR01917 72 IKGANPDIFIAGP--AFNAGRYGMAAGAITKAVQD-ELGIKAFTAMY 115 (431)
T ss_pred HHhcCCCEEEEcC--ccCCccHHHHHHHHHHHHHH-hhCCCeEEEec
Confidence 4445899999998 46888887888999998776 67999998654
No 50
>PRK09932 glycerate kinase II; Provisional
Probab=41.40 E-value=1.7e+02 Score=28.97 Aligned_cols=40 Identities=28% Similarity=0.220 Sum_probs=29.3
Q ss_pred CCcEEEecCCCCCCCccccccch--hHHHHHHHHHcCCCEEEEeee
Q 023840 102 VPDLVISGINMGSNCGYHVVYSG--TVAGAREAFFHGVPSVSISYD 145 (276)
Q Consensus 102 ~PDLVVSGIN~G~N~G~~v~ySG--TVgAA~Ea~~~GiPaIAvS~~ 145 (276)
.-||||.| +|.=-. -+..| .+|-|+.|..+|+|.|+++-.
T Consensus 284 ~ADlVITG--EG~~D~--Qt~~GK~p~~Va~~A~~~~~Pvi~i~G~ 325 (381)
T PRK09932 284 GAALVITG--EGRIDS--QTAGGKAPLGVASVAKQFNVPVIGIAGV 325 (381)
T ss_pred cCCEEEEC--CCcccc--cccCCccHHHHHHHHHHcCCCEEEEecc
Confidence 57999998 333222 23344 569999999999999999764
No 51
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=38.63 E-value=57 Score=32.16 Aligned_cols=61 Identities=31% Similarity=0.299 Sum_probs=37.3
Q ss_pred EecCChHHHHHHhhhcccCCCCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEeee
Q 023840 81 AVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD 145 (276)
Q Consensus 81 ~v~GTPaDcV~~al~~~l~~~~PDLVVSGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS~~ 145 (276)
.++|...=.=.++|+..+ ..-||||.| +|..-.....=....+-|+.|..+|+|.|||...
T Consensus 265 l~sG~~~v~~~~~l~~~l--~~aDlVITG--EG~~D~Qtl~GK~p~~Va~~A~~~~vPviav~G~ 325 (377)
T PF02595_consen 265 LVSGIDLVLELLGLEERL--EDADLVITG--EGRLDAQTLAGKVPGGVARLAKKHGVPVIAVAGS 325 (377)
T ss_dssp EEEHHHHHHHHTTHHHHC--CC-SEEEE----CECSTTTTTTCHHHHHHCCHCCTT--EEEEECE
T ss_pred ECchHHHHHHhcCHHHHh--cCCCEEEEC--ccccccccCCCcHHHHHHHHHHHcCCcEEEEeCC
Confidence 466666666666676544 368999998 4543333333344567788888999999999864
No 52
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=38.36 E-value=41 Score=30.88 Aligned_cols=67 Identities=19% Similarity=0.319 Sum_probs=42.9
Q ss_pred eEEEecCCCCCC-cCHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHHHhh
Q 023840 16 TIMVTNDDGIDA-PGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGV 94 (276)
Q Consensus 16 ~ILlTNDDGi~s-pGi~aL~~aL~~~g~~~V~VVAP~~~qSg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al 94 (276)
+++|+ |||+.+ .-+++-.+++++.+-.+|+|..|-..++.+-. ++...+.. .|=-+|.+-..+|.
T Consensus 126 ~VIlV-DDGiATGatm~aAi~~~r~~~~~~IviAVPV~p~~a~~~------------l~s~~D~v-vc~~~P~~F~AVg~ 191 (220)
T COG1926 126 TVILV-DDGIATGATMKAAVRALRAKGPKEIVIAVPVAPEDAAAE------------LESEADEV-VCLYMPAPFEAVGE 191 (220)
T ss_pred EEEEE-eCCcchhHHHHHHHHHHHhcCCceEEEEcccCCHHHHHH------------HHhhcCeE-EEEcCCccHHHHHH
Confidence 44454 999985 33667788888888789999999887776532 11122232 33357777666665
Q ss_pred hc
Q 023840 95 SQ 96 (276)
Q Consensus 95 ~~ 96 (276)
++
T Consensus 192 ~Y 193 (220)
T COG1926 192 FY 193 (220)
T ss_pred HH
Confidence 53
No 53
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=36.23 E-value=24 Score=31.33 Aligned_cols=22 Identities=36% Similarity=0.647 Sum_probs=19.4
Q ss_pred cccccch-hHHHHHHHHH-cCCCE
Q 023840 118 YHVVYSG-TVAGAREAFF-HGVPS 139 (276)
Q Consensus 118 ~~v~ySG-TVgAA~Ea~~-~GiPa 139 (276)
.||+|+| |+=||+.|.+ +|-|+
T Consensus 103 DDVLytGRTIRAAldal~d~GRPa 126 (179)
T COG2065 103 DDVLYTGRTIRAALDALVDYGRPA 126 (179)
T ss_pred eeecccCccHHHHHHHHHhcCCcc
Confidence 4799999 9999999985 88887
No 54
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=35.82 E-value=52 Score=29.06 Aligned_cols=28 Identities=29% Similarity=0.265 Sum_probs=22.8
Q ss_pred CCcCHHHHHHHHHhcCCccEEEEeeCCCC
Q 023840 26 DAPGLRSLVRVLVSTNRYTVQVCAPDSEK 54 (276)
Q Consensus 26 ~spGi~aL~~aL~~~g~~~V~VVAP~~~q 54 (276)
.+--++.|+++|.+.| |+|.++.|....
T Consensus 16 ~~~~~~~l~~~L~~~g-~~v~v~~~~~~~ 43 (374)
T cd03817 16 VATSIRRLAEELEKRG-HEVYVVAPSYPG 43 (374)
T ss_pred eehHHHHHHHHHHHcC-CeEEEEeCCCCC
Confidence 4456888999999999 899999987643
No 55
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=35.68 E-value=42 Score=32.82 Aligned_cols=55 Identities=27% Similarity=0.282 Sum_probs=37.7
Q ss_pred ChHHHHHHhhhcccCCCCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEe
Q 023840 85 TPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS 143 (276)
Q Consensus 85 TPaDcV~~al~~~l~~~~PDLVVSGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS 143 (276)
-+=.+..-=+. .+.+.+||+||-||- .|.|..=.-.|+|+.|.+- ..|||+++-=
T Consensus 64 n~eea~~~i~~-mv~~~~pD~viaGPa--FnagrYG~acg~v~~aV~e-~~~IP~vtaM 118 (349)
T PF07355_consen 64 NKEEALKKILE-MVKKLKPDVVIAGPA--FNAGRYGVACGEVAKAVQE-KLGIPVVTAM 118 (349)
T ss_pred CHHHHHHHHHH-HHHhcCCCEEEEcCC--cCCchHHHHHHHHHHHHHH-hhCCCEEEEe
Confidence 34344433333 244458999999984 5888877778888887654 5699999653
No 56
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=35.54 E-value=1.2e+02 Score=30.18 Aligned_cols=103 Identities=19% Similarity=0.159 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHHHhhhcccCCCCCcEEEec
Q 023840 30 LRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISG 109 (276)
Q Consensus 30 i~aL~~aL~~~g~~~V~VVAP~~~qSg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al~~~l~~~~PDLVVSG 109 (276)
-...+++|.++| .||+++ -++-||+.++.+.++--+..+++.....=+-.-.+.+..+++ + ..|.|..|
T Consensus 154 ~~~~v~~lv~aG-vDvI~i-----D~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~--a---GaD~I~vG 222 (404)
T PRK06843 154 TIERVEELVKAH-VDILVI-----DSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLIS--V---GADCLKVG 222 (404)
T ss_pred HHHHHHHHHhcC-CCEEEE-----ECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHH--c---CCCEEEEC
Confidence 346888899988 588877 222255544433332111122333333334333444444554 1 48999999
Q ss_pred CCCCCCCcccccc-ch--hHHHHH---HHH-HcCCCEEEEe
Q 023840 110 INMGSNCGYHVVY-SG--TVAGAR---EAF-FHGVPSVSIS 143 (276)
Q Consensus 110 IN~G~N~G~~v~y-SG--TVgAA~---Ea~-~~GiPaIAvS 143 (276)
+-.|..++.-.+. .| ++.+-. +.+ ..++|.||=.
T Consensus 223 ~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdG 263 (404)
T PRK06843 223 IGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADG 263 (404)
T ss_pred CCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeC
Confidence 9999876654332 22 444332 222 3589988644
No 57
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=34.29 E-value=53 Score=32.19 Aligned_cols=43 Identities=26% Similarity=0.205 Sum_probs=38.9
Q ss_pred CCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEe
Q 023840 101 SVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS 143 (276)
Q Consensus 101 ~~PDLVVSGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS 143 (276)
++.|+||.|-..=.--|.-+.-.||...|+-|-.+|||.+.+.
T Consensus 237 ~~Vd~VivGAd~I~~nG~v~NKiGTy~lA~~Ak~~~vPfyV~A 279 (356)
T PRK08334 237 GKVDAIIVGADRIVANGDFANKIGTYTLAVLAKEHGIPFFTVA 279 (356)
T ss_pred cCCCEEEECccEEecCCCEeehhhHHHHHHHHHHhCCCEEEEc
Confidence 5799999998887777878889999999999999999999875
No 58
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=33.29 E-value=44 Score=28.32 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=15.2
Q ss_pred CCCCcCHHHHHHHHHhcC
Q 023840 24 GIDAPGLRSLVRVLVSTN 41 (276)
Q Consensus 24 Gi~spGi~aL~~aL~~~g 41 (276)
.+.+||...+++.|++.|
T Consensus 26 ~~~~~~~~~a~~~l~~~G 43 (157)
T smart00775 26 DWTHPGVAKLYRDIQNNG 43 (157)
T ss_pred CcCCHHHHHHHHHHHHcC
Confidence 488999999999998765
No 59
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=33.06 E-value=1e+02 Score=28.85 Aligned_cols=24 Identities=8% Similarity=0.068 Sum_probs=20.7
Q ss_pred CHHHHHHHHHhcCCccEEEEeeCCC
Q 023840 29 GLRSLVRVLVSTNRYTVQVCAPDSE 53 (276)
Q Consensus 29 Gi~aL~~aL~~~g~~~V~VVAP~~~ 53 (276)
-+..|+++|.+.| |+|+|+++...
T Consensus 25 ~v~~la~~L~~~G-~~V~v~~~~~~ 48 (405)
T TIGR03449 25 YILETATELARRG-IEVDIFTRATR 48 (405)
T ss_pred hHHHHHHHHhhCC-CEEEEEecccC
Confidence 4788999999999 79999998753
No 60
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=32.96 E-value=37 Score=27.16 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=17.6
Q ss_pred eEEEecCCCCCCcCHHHHHHHHHhcCCccEEEEee
Q 023840 16 TIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAP 50 (276)
Q Consensus 16 ~ILlTNDDGi~spGi~aL~~aL~~~g~~~V~VVAP 50 (276)
-||+|.|. -+..+.+.|++.| .+|.|++.
T Consensus 99 ivLvSgD~-----Df~~~v~~l~~~g-~~V~v~~~ 127 (146)
T PF01936_consen 99 IVLVSGDS-----DFAPLVRKLRERG-KRVIVVGA 127 (146)
T ss_dssp EEEE---G-----GGHHHHHHHHHH---EEEEEE-
T ss_pred EEEEECcH-----HHHHHHHHHHHcC-CEEEEEEe
Confidence 37888883 3666788888888 58999984
No 61
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=32.36 E-value=52 Score=29.40 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=28.9
Q ss_pred CCCCCeEEEecCCCCCCcCHHHHHHHHHhcCCccEEEE
Q 023840 11 SDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVC 48 (276)
Q Consensus 11 ~~~~~~ILlTNDDGi~spGi~aL~~aL~~~g~~~V~VV 48 (276)
...+..|.||=|||+.......+.+.|++.+. ..+..
T Consensus 33 ~~~~k~VaLTFDDGp~~~~t~~lL~~L~~~~v-kATFF 69 (224)
T TIGR02884 33 DTSKKVIYLTFDNGYENGYTPKILDVLKEKKV-PAAFF 69 (224)
T ss_pred CCCCCEEEEEEECCCCccchHHHHHHHHHcCC-CeEEE
Confidence 34567799999999988778889999999874 44333
No 62
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=32.03 E-value=60 Score=31.31 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=28.1
Q ss_pred CCeEEEecCCCCCCcCHHHHHHHHHhcCCccEEEEeeC
Q 023840 14 KPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPD 51 (276)
Q Consensus 14 ~~~ILlTNDDGi~spGi~aL~~aL~~~g~~~V~VVAP~ 51 (276)
+..||.++|=|.+ +=+.-+++.|.+.| |+|+|+++.
T Consensus 5 ~~~~~~~~~~~~~-~R~~~~a~~L~~~G-~~V~ii~~~ 40 (415)
T cd03816 5 RVCVLVLGDIGRS-PRMQYHALSLAKHG-WKVDLVGYL 40 (415)
T ss_pred EEEEEEecccCCC-HHHHHHHHHHHhcC-ceEEEEEec
Confidence 3568889886665 45566889999999 899999764
No 63
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=31.79 E-value=61 Score=32.02 Aligned_cols=42 Identities=29% Similarity=0.256 Sum_probs=34.1
Q ss_pred CCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEeee
Q 023840 102 VPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD 145 (276)
Q Consensus 102 ~PDLVVSGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS~~ 145 (276)
.-||||.| +|++-...+.=-=++|-|..|-.+++|.||+-..
T Consensus 284 daDLVITG--EGr~D~Qs~~GK~pigVA~~Akk~~vPvIaiaGs 325 (378)
T COG1929 284 DADLVITG--EGRIDSQSLHGKTPIGVAKLAKKYGVPVIAIAGS 325 (378)
T ss_pred cCCEEEeC--CCcccccccCCccchHHHHhhhhhCCCEEEEecc
Confidence 67999999 6777666665555779999999999999999653
No 64
>PRK11568 hypothetical protein; Provisional
Probab=31.77 E-value=57 Score=29.42 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=23.5
Q ss_pred ecCCCCCC--cCHHHHHHHHHhcCCccEEEEe
Q 023840 20 TNDDGIDA--PGLRSLVRVLVSTNRYTVQVCA 49 (276)
Q Consensus 20 TNDDGi~s--pGi~aL~~aL~~~g~~~V~VVA 49 (276)
.||||-.+ .|...| ++|+..+..||.||.
T Consensus 69 ~sDDGEPsGTAG~PiL-~vL~~~~l~nv~vVV 99 (204)
T PRK11568 69 FSDDGEPAGTAGKPML-AQLMGSGVGEITAVV 99 (204)
T ss_pred CCCCCCCCCCchHHHH-HHHHHCCCccEEEEE
Confidence 79999976 898754 668888888998873
No 65
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=31.76 E-value=1.2e+02 Score=29.08 Aligned_cols=103 Identities=20% Similarity=0.188 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCCccEEEEeeCCCCC-cCcccccCCCCeeeeeccCCCCeeEEec----CChHHHHHHhhhc---ccCCC
Q 023840 30 LRSLVRVLVSTNRYTVQVCAPDSEKS-AVSHSITWRHPISARPADFDGVTAYAVS----GTPADCASLGVSQ---ALFPS 101 (276)
Q Consensus 30 i~aL~~aL~~~g~~~V~VVAP~~~qS-g~g~sit~~~pl~v~~~~~~g~~~~~v~----GTPaDcV~~al~~---~l~~~ 101 (276)
++.++++|++....++.+|.=-...+ -.|.++....- ..++..-...+.++ ++.++.+..++.. .+...
T Consensus 16 lapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (365)
T TIGR03568 16 LRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEK---DGFDIDEKIEILLDSDSNAGMAKSMGLTIIGFSDAFERL 92 (365)
T ss_pred HHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHHH---cCCCCCCccccccCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 55688888875435776666333322 23322221110 00000001112332 3445555544443 33446
Q ss_pred CCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEeee
Q 023840 102 VPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD 145 (276)
Q Consensus 102 ~PDLVVSGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS~~ 145 (276)
+||+|++- |. ..=|+++|+.|..+|||.+-+-.+
T Consensus 93 ~Pd~vlv~---GD-------~~~~la~alaA~~~~IPv~HveaG 126 (365)
T TIGR03568 93 KPDLVVVL---GD-------RFEMLAAAIAAALLNIPIAHIHGG 126 (365)
T ss_pred CCCEEEEe---CC-------chHHHHHHHHHHHhCCcEEEEECC
Confidence 89999862 10 012679999999999999988765
No 66
>PRK14697 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Provisional
Probab=31.54 E-value=2e+02 Score=25.82 Aligned_cols=49 Identities=27% Similarity=0.310 Sum_probs=28.5
Q ss_pred HHHHHHHHcCCCEEEEee-ecCCCCCCCcccH----HHHHHHHHHHHHHHHHHH
Q 023840 127 AGAREAFFHGVPSVSISY-DWVGGKSNVNDYT----LAAEACLPIINAILAEIR 175 (276)
Q Consensus 127 gAA~Ea~~~GiPaIAvS~-~~~~~~~~~~~~~----~aa~~~~~li~~l~~~~~ 175 (276)
+.|.-+..+|+|.+++=. ....+.....+|+ .|++.+.+++..+++.+.
T Consensus 175 Ava~v~~~~~vpfl~iR~ISD~a~~~~~~~~~~~~~~aa~~~~~~~~~~l~~~~ 228 (233)
T PRK14697 175 AIGHVAYINEVPFLVIRCISDSADDEAQISYDDFAKTAANYCSEIIVEMLKNIS 228 (233)
T ss_pred HHHHHHHHcCCCEEEEEEeccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345556689999999843 1111122233443 667777777777776543
No 67
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=31.08 E-value=83 Score=26.09 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=22.7
Q ss_pred eEEEecCCCCCCcCHHHHHHHHHhcCCccEEEEe
Q 023840 16 TIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCA 49 (276)
Q Consensus 16 ~ILlTNDDGi~spGi~aL~~aL~~~g~~~V~VVA 49 (276)
-||+| ||.....+...++.|++.|. ++++|+
T Consensus 107 iillT--DG~~~~~~~~~a~~lk~~gi-~i~~ig 137 (164)
T cd01482 107 VILIT--DGKSQDDVELPARVLRNLGV-NVFAVG 137 (164)
T ss_pred EEEEc--CCCCCchHHHHHHHHHHCCC-EEEEEe
Confidence 35665 77777777778889998884 676664
No 68
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=30.54 E-value=48 Score=20.03 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=22.1
Q ss_pred CCCeEEEecCCCCCCcCHHHHHHHHH
Q 023840 13 HKPTIMVTNDDGIDAPGLRSLVRVLV 38 (276)
Q Consensus 13 ~~~~ILlTNDDGi~spGi~aL~~aL~ 38 (276)
+.++.|==+|-.+..+|..+|.++|+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L~ 27 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEALK 27 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHhc
Confidence 34667777899999999999999986
No 69
>PF10841 DUF2644: Protein of unknown function (DUF2644); InterPro: IPR020300 This entry is represented by Bacteriophage PY100, Orf49. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains membrane proteins with no known function.
Probab=30.15 E-value=20 Score=26.50 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=15.2
Q ss_pred EEecCCCCCCc-CHHHHHHHHHhcC
Q 023840 18 MVTNDDGIDAP-GLRSLVRVLVSTN 41 (276)
Q Consensus 18 LlTNDDGi~sp-Gi~aL~~aL~~~g 41 (276)
||||+||--|. +---+.-+|...|
T Consensus 3 LiTN~dGrLSTT~~iQffg~lv~ag 27 (60)
T PF10841_consen 3 LITNADGRLSTTAFIQFFGALVMAG 27 (60)
T ss_pred cccCCCCcEehHHHHHHHHHHHHHH
Confidence 79999998763 4444555555444
No 70
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=29.98 E-value=1.7e+02 Score=28.76 Aligned_cols=94 Identities=19% Similarity=0.163 Sum_probs=60.6
Q ss_pred HHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHHHHhhhcccCCCCCcEEEecCCCCCC
Q 023840 36 VLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSN 115 (276)
Q Consensus 36 aL~~~g~~~V~VVAP~~~qSg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al~~~l~~~~PDLVVSGIN~G~N 115 (276)
.+.+.| .+..|++-++--...|+.+|. +++...|-+...+ .|.....+ +..++.|.||.|-..=.-
T Consensus 194 ~a~~~g-k~f~V~v~EsRP~~qG~rlta------~eL~~~GIpvtlI----~Dsa~~~~---m~~~~Vd~VivGAD~I~~ 259 (363)
T PRK05772 194 LAKALG-MSVSVIAPETRPWLQGSRLTV------YELMEEGIKVTLI----TDTAVGLV---MYKDMVNNVMVGADRILR 259 (363)
T ss_pred HHHHCC-CeEEEEECCCCccchhHHHHH------HHHHHCCCCEEEE----ehhHHHHH---HhhcCCCEEEECccEEec
Confidence 344456 467777777766666765552 1222233333332 12221111 222479999999887766
Q ss_pred CccccccchhHHHHHHHHHcCCCEEEEe
Q 023840 116 CGYHVVYSGTVAGAREAFFHGVPSVSIS 143 (276)
Q Consensus 116 ~G~~v~ySGTVgAA~Ea~~~GiPaIAvS 143 (276)
-|.-+.-.||..-|+-|-.+|+|-+.++
T Consensus 260 NG~v~NKiGTy~lA~~Ak~~~vPfyV~a 287 (363)
T PRK05772 260 DGHVFNKIGTFKEAVIAHELGIPFYALA 287 (363)
T ss_pred CCCEeehhhhHHHHHHHHHhCCCEEEEc
Confidence 6777788999999999999999999885
No 71
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=29.84 E-value=78 Score=29.12 Aligned_cols=33 Identities=21% Similarity=0.181 Sum_probs=23.7
Q ss_pred CeEEEecCCCCCCcCHHHHHHHHHhcC-CccEEEEeeCC
Q 023840 15 PTIMVTNDDGIDAPGLRSLVRVLVSTN-RYTVQVCAPDS 52 (276)
Q Consensus 15 ~~ILlTNDDGi~spGi~aL~~aL~~~g-~~~V~VVAP~~ 52 (276)
|+||||+-. .++ .++++|+++| .++|+++-+..
T Consensus 2 ~~vLv~g~~----~~~-~~~~~l~~~~~g~~vi~~d~~~ 35 (326)
T PRK12767 2 MNILVTSAG----RRV-QLVKALKKSLLKGRVIGADISE 35 (326)
T ss_pred ceEEEecCC----ccH-HHHHHHHHhccCCEEEEECCCC
Confidence 799999873 334 7888888885 25777776653
No 72
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=28.98 E-value=89 Score=27.56 Aligned_cols=28 Identities=21% Similarity=0.111 Sum_probs=22.1
Q ss_pred CcCHHHHHHHHHhcCCccEEEEeeCCCCC
Q 023840 27 APGLRSLVRVLVSTNRYTVQVCAPDSEKS 55 (276)
Q Consensus 27 spGi~aL~~aL~~~g~~~V~VVAP~~~qS 55 (276)
..-++.|+++|.+.| |+|.++.+.....
T Consensus 17 ~~~~~~l~~~L~~~g-~~v~~~~~~~~~~ 44 (394)
T cd03794 17 AFRTTELAEELVKRG-HEVTVITGSPNYP 44 (394)
T ss_pred ceeHHHHHHHHHhCC-ceEEEEecCCCcc
Confidence 344788999999998 7999998875433
No 73
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated
Probab=28.76 E-value=2.2e+02 Score=25.79 Aligned_cols=51 Identities=16% Similarity=0.047 Sum_probs=30.7
Q ss_pred hHHHHHHHHHcCCCEEEEee-ecCCCCCCCccc----HHHHHHHHHHHHHHHHHHH
Q 023840 125 TVAGAREAFFHGVPSVSISY-DWVGGKSNVNDY----TLAAEACLPIINAILAEIR 175 (276)
Q Consensus 125 TVgAA~Ea~~~GiPaIAvS~-~~~~~~~~~~~~----~~aa~~~~~li~~l~~~~~ 175 (276)
+-+.|.-+..+|+|.+++=. ....+.....+| +.|++.+.+++.+++++++
T Consensus 174 ~aAvA~vc~~~~vP~l~IR~ISD~a~~~~~~~~~~f~~~aa~~sa~~~~~~l~~~~ 229 (236)
T PRK06714 174 VAAFAYVCQINKKPFLCLKAASDQANDKTKEEQKIFKMLACERACEHLIAFLRVYE 229 (236)
T ss_pred HHHHHHHHHHhCCCEEEEEEeccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34556777789999998733 111112222334 5677777788887776543
No 74
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=28.63 E-value=76 Score=27.14 Aligned_cols=31 Identities=13% Similarity=0.040 Sum_probs=26.6
Q ss_pred CCCCeEEEecCCCCCCcCHHHHHHHHHhcCC
Q 023840 12 DHKPTIMVTNDDGIDAPGLRSLVRVLVSTNR 42 (276)
Q Consensus 12 ~~~~~ILlTNDDGi~spGi~aL~~aL~~~g~ 42 (276)
++...|.||=|||+.......+.+.|++.+.
T Consensus 3 ~~~k~V~LTFDDgp~~~~t~~~l~~L~~~~i 33 (191)
T TIGR02764 3 TSDKKIALTFDISWGNDYTEPILDTLKEYDV 33 (191)
T ss_pred CCCCEEEEEEECCCCcccHHHHHHHHHHcCC
Confidence 4556799999999998788889999999884
No 75
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=28.12 E-value=50 Score=33.41 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=30.5
Q ss_pred CCCeEEEe-c-CCCCCCcCHHHHHHHHHhcCCccEEEEeeCCC
Q 023840 13 HKPTIMVT-N-DDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSE 53 (276)
Q Consensus 13 ~~~~ILlT-N-DDGi~spGi~aL~~aL~~~g~~~V~VVAP~~~ 53 (276)
+.-|||+. . ..+=+--..+.++++|.+.| |+|+|+.|...
T Consensus 19 ~~~kIl~~~P~~~~SH~~~~~~l~~~La~rG-H~VTvi~p~~~ 60 (507)
T PHA03392 19 RAARILAVFPTPAYSHHSVFKVYVEALAERG-HNVTVIKPTLR 60 (507)
T ss_pred CcccEEEEcCCCCCcHHHHHHHHHHHHHHcC-CeEEEEecccc
Confidence 34568865 3 34445568999999999999 89999999753
No 76
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=27.61 E-value=1.9e+02 Score=23.29 Aligned_cols=35 Identities=37% Similarity=0.529 Sum_probs=28.9
Q ss_pred EEEecCCCCCCcCHHHHHHHHHhcCCccEEEEeeCCCC
Q 023840 17 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEK 54 (276)
Q Consensus 17 ILlTNDDGi~spGi~aL~~aL~~~g~~~V~VVAP~~~q 54 (276)
||+. ||.....+..+++.|+.+| .+|.++.|..+.
T Consensus 6 ill~--~g~~~~e~~~~~~~~~~a~-~~v~vvs~~~~~ 40 (142)
T cd03132 6 ILVA--DGVDAAELSALKAALKAAG-ANVKVVAPTLGG 40 (142)
T ss_pred EEEc--CCcCHHHHHHHHHHHHHCC-CEEEEEecCcCc
Confidence 5554 5788888999999999998 699999998753
No 77
>PRK11249 katE hydroperoxidase II; Provisional
Probab=27.21 E-value=2e+02 Score=31.10 Aligned_cols=39 Identities=18% Similarity=0.364 Sum_probs=33.0
Q ss_pred CCCeEEEecCCCCCCcCHHHHHHHHHhcCCccEEEEeeCC
Q 023840 13 HKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDS 52 (276)
Q Consensus 13 ~~~~ILlTNDDGi~spGi~aL~~aL~~~g~~~V~VVAP~~ 52 (276)
+.++|.|-=.||.+...+..++++|+++| .+|.||+|..
T Consensus 596 ~gRKIaILVaDG~d~~ev~~~~daL~~AG-a~V~VVSp~~ 634 (752)
T PRK11249 596 KGRKVAILLNDGVDAADLLAILKALKAKG-VHAKLLYPRM 634 (752)
T ss_pred cccEEEEEecCCCCHHHHHHHHHHHHHCC-CEEEEEECCC
Confidence 44566666678999999999999999999 6999999966
No 78
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=27.16 E-value=62 Score=28.23 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=27.6
Q ss_pred EEecCCCCCCcCHHHHHHHHHhcCCccEEEEeeCCCCC
Q 023840 18 MVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKS 55 (276)
Q Consensus 18 LlTNDDGi~spGi~aL~~aL~~~g~~~V~VVAP~~~qS 55 (276)
+|++-.|-...-++.|.++|++.| |+|.++.+.....
T Consensus 4 ~i~~~~~g~~~~~~~l~~~L~~~g-~~v~~~~~~~~~~ 40 (359)
T cd03808 4 HIVTVDGGLYSFRLPLIKALRAAG-YEVHVVAPPGDEL 40 (359)
T ss_pred EEEecchhHHHHHHHHHHHHHhcC-CeeEEEecCCCcc
Confidence 344444545567888999998888 8999999876654
No 79
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=27.11 E-value=1.2e+02 Score=28.24 Aligned_cols=50 Identities=16% Similarity=0.152 Sum_probs=31.5
Q ss_pred HHHHhhhcccCCCCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEeee
Q 023840 89 CASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD 145 (276)
Q Consensus 89 cV~~al~~~l~~~~PDLVVSGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS~~ 145 (276)
.+...|...+-...||||+.|- ...=.++|-||+.. |.+.|+|.+..-..
T Consensus 99 ~tA~~La~ai~~~~~DLVl~G~------~s~D~~tgqvg~~l-Ae~Lg~P~vt~v~~ 148 (256)
T PRK03359 99 QTASALAAAAQKAGFDLILCGD------GSSDLYAQQVGLLV-GEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHHHHHHhCCCEEEEcC------ccccCCCCcHHHHH-HHHhCCCceeeEEE
Confidence 3334443323233599999992 22234788888765 55889999987654
No 80
>PRK12342 hypothetical protein; Provisional
Probab=26.57 E-value=1.2e+02 Score=28.19 Aligned_cols=49 Identities=16% Similarity=0.139 Sum_probs=30.6
Q ss_pred HHHhhhcccCCCCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEeee
Q 023840 90 ASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD 145 (276)
Q Consensus 90 V~~al~~~l~~~~PDLVVSGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS~~ 145 (276)
+..+|...+-...||||+.|- ...=.++|-||+.. |.+.|+|.|..-..
T Consensus 97 ta~~La~~i~~~~~DLVl~G~------~s~D~~tgqvg~~l-A~~Lg~P~vt~v~~ 145 (254)
T PRK12342 97 TAKALAAAIEKIGFDLLLFGE------GSGDLYAQQVGLLL-GELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHHHHHhCCCEEEEcC------CcccCCCCCHHHHH-HHHhCCCcEeeEEE
Confidence 344444323223599999992 12235677888765 55889999987643
No 81
>TIGR00257 IMPACT_YIGZ uncharacterized protein, YigZ family. This uncharacterized protein family includes YigZ, which has been crystallized, from E. coli. YigZ is homologous to the protein product of the mouse IMPACT gene. Crystallography shows a two-domain stucture, and the C-terminal domain is suggested to bind nucleic acids. The function is unknown. Note that the ortholog from E. coli was shown fused to the pepQ gene in GenBank entry X54687. This caused occasional misidentification of this protein as pepQ; this family is found in a number of species that lack pepQ.
Probab=26.54 E-value=81 Score=28.44 Aligned_cols=29 Identities=28% Similarity=0.296 Sum_probs=23.2
Q ss_pred ecCCCCCC--cCHHHHHHHHHhcCCccEEEEe
Q 023840 20 TNDDGIDA--PGLRSLVRVLVSTNRYTVQVCA 49 (276)
Q Consensus 20 TNDDGi~s--pGi~aL~~aL~~~g~~~V~VVA 49 (276)
.||||-.+ .|...| ++|+..+..||+||.
T Consensus 69 ~sDDGEPsGTAG~PiL-~vL~~~~l~nv~vVV 99 (204)
T TIGR00257 69 FSDDGEPAGTAGKPML-SVLRGSDLGDIGAVV 99 (204)
T ss_pred CCCCCCCCCCchHHHH-HHHHHCCCCcEEEEE
Confidence 79999975 888754 668888888988873
No 82
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=26.42 E-value=92 Score=29.46 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=20.9
Q ss_pred CcCHHHHHHHHHhcCCccEEEEeeCC
Q 023840 27 APGLRSLVRVLVSTNRYTVQVCAPDS 52 (276)
Q Consensus 27 spGi~aL~~aL~~~g~~~V~VVAP~~ 52 (276)
+.-+..|.++|.+.| |+|+|+.|..
T Consensus 17 e~~~~~la~~L~~~G-~~V~v~~~~~ 41 (398)
T cd03796 17 ETHIYQLSQCLIKRG-HKVVVITHAY 41 (398)
T ss_pred HHHHHHHHHHHHHcC-CeeEEEeccC
Confidence 345788999999999 8999999864
No 83
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=26.01 E-value=66 Score=29.08 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCCccEEEEeeCC
Q 023840 30 LRSLVRVLVSTNRYTVQVCAPDS 52 (276)
Q Consensus 30 i~aL~~aL~~~g~~~V~VVAP~~ 52 (276)
..+|.++|++.| |+|.|+.|.-
T Consensus 22 ~~~L~kaL~~~G-~~V~Vi~P~y 43 (245)
T PF08323_consen 22 VGSLPKALAKQG-HDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHTT--EEEEEEE-T
T ss_pred HHHHHHHHHhcC-CeEEEEEccc
Confidence 467999999999 8999999976
No 84
>PRK05584 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=25.94 E-value=2.4e+02 Score=24.76 Aligned_cols=48 Identities=21% Similarity=0.180 Sum_probs=27.0
Q ss_pred hHHHHHHHHHcCCCEEEEeeec-CCCCCCCcccH----HHHHHHHHHHHHHHH
Q 023840 125 TVAGAREAFFHGVPSVSISYDW-VGGKSNVNDYT----LAAEACLPIINAILA 172 (276)
Q Consensus 125 TVgAA~Ea~~~GiPaIAvS~~~-~~~~~~~~~~~----~aa~~~~~li~~l~~ 172 (276)
+.+.|.-|..+|+|.+++-.-. ..+.....+|+ .|++.+.+++.++++
T Consensus 175 ~aa~a~va~~~~vp~~~ir~vSd~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 227 (230)
T PRK05584 175 GAAIAQVCHEFGVPFVVVRAISDTADDEAHVSFDEFLAVAAKYSANILKRMLE 227 (230)
T ss_pred HHHHHHHHHHcCCCEEEEEEeccCCCCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555667999999985421 11112233554 455555666666664
No 85
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=25.92 E-value=65 Score=31.19 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=20.6
Q ss_pred HHHHHHHHHhcCCccEEEEeeCCCC
Q 023840 30 LRSLVRVLVSTNRYTVQVCAPDSEK 54 (276)
Q Consensus 30 i~aL~~aL~~~g~~~V~VVAP~~~q 54 (276)
...|.++|.+.| |+|.|+.|.-.+
T Consensus 22 ~~~L~~aL~~~G-~~V~Vi~p~y~~ 45 (476)
T cd03791 22 VGALPKALAKLG-HDVRVIMPKYGR 45 (476)
T ss_pred HHHHHHHHHHCC-CeEEEEecCCcc
Confidence 577999999999 899999997664
No 86
>TIGR01441 GPR GPR endopeptidase. This model describes a tetrameric protease that makes the rate-limiting first cut in the small, acid-soluble spore proteins (SASP) of Bacillus subtilis and related species. The enzyme lacks clear homology to other known proteases. It processes its own amino end before becoming active to cleave SASPs.
Probab=25.83 E-value=1.6e+02 Score=29.02 Aligned_cols=72 Identities=26% Similarity=0.396 Sum_probs=44.5
Q ss_pred ecCChHHHHHHhhhcccCCCCCcEEE---------------------ecCCCCCCCccc--cccchhHHHHHHHHHcCCC
Q 023840 82 VSGTPADCASLGVSQALFPSVPDLVI---------------------SGINMGSNCGYH--VVYSGTVAGAREAFFHGVP 138 (276)
Q Consensus 82 v~GTPaDcV~~al~~~l~~~~PDLVV---------------------SGIN~G~N~G~~--v~ySGTVgAA~Ea~~~GiP 138 (276)
..|-=..=+..|+-. ..+||+|| .||+.|.=.|.. -+..- ..|||
T Consensus 157 ~TGiET~EIIkgiVe---k~kPD~VIaIDALAaRs~~Rln~TIQIsDTGI~PGSGVGN~R~~l~~e---------tLGVP 224 (358)
T TIGR01441 157 ITGIETSDIIRGIIE---QIKPDFVIAIDALAARKMERVNSTIQISDTGIHPGSGVGNKRKELSKK---------TLGVP 224 (358)
T ss_pred cccccHHHHHHHHHH---hhCCCEEEEechhhcCchhhccCeEEecCCCcCCCCCcCccccccCHH---------HcCCC
Confidence 344444445555532 34899997 599999877753 23322 46999
Q ss_pred EEEEeeecCCCCCCCcccHHHHHHHHHHHHHHHHHH
Q 023840 139 SVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEI 174 (276)
Q Consensus 139 aIAvS~~~~~~~~~~~~~~~aa~~~~~li~~l~~~~ 174 (276)
.||+-... ..| |+..+.+.++.+++.+
T Consensus 225 VIAIGVPT------VVd---A~tI~~Dtid~~l~~~ 251 (358)
T TIGR01441 225 VIAVGVPT------VVD---AVTIASDTIDYVLKHF 251 (358)
T ss_pred EEEEcCCe------eec---hHHHHHHHHHHHHHHH
Confidence 99997643 222 5566666677666554
No 87
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=25.79 E-value=73 Score=24.77 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCCcC-HHHHHHHHHhcCCccEEE
Q 023840 13 HKPTIMVTNDDGIDAPG-LRSLVRVLVSTNRYTVQV 47 (276)
Q Consensus 13 ~~~~ILlTNDDGi~spG-i~aL~~aL~~~g~~~V~V 47 (276)
+..+|||. ||-+++-+ ++...+.|++.|. +++-
T Consensus 87 ~gk~vliV-DDvi~tG~Tl~~~~~~L~~~g~-~~v~ 120 (125)
T PF00156_consen 87 KGKRVLIV-DDVIDTGGTLKEAIELLKEAGA-KVVG 120 (125)
T ss_dssp TTSEEEEE-EEEESSSHHHHHHHHHHHHTTB-SEEE
T ss_pred cceeEEEE-eeeEcccHHHHHHHHHHHhCCC-cEEE
Confidence 45689998 88888743 7888999999984 4443
No 88
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=25.68 E-value=1e+02 Score=27.82 Aligned_cols=36 Identities=17% Similarity=0.177 Sum_probs=27.7
Q ss_pred EEEec---CCCCCCcCHHHHHHHHHhcCCccEEEEeeCCC
Q 023840 17 IMVTN---DDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSE 53 (276)
Q Consensus 17 ILlTN---DDGi~spGi~aL~~aL~~~g~~~V~VVAP~~~ 53 (276)
||+|| =||.+-.=+-.-+++|+++| ++|.+++|...
T Consensus 6 ills~~~~~dG~e~~E~~~P~~~L~~aG-~~V~~aSp~~~ 44 (217)
T PRK11780 6 VILSGCGVYDGSEIHEAVLTLLALDRAG-AEAVCFAPDIP 44 (217)
T ss_pred EEEccCCCCCCEehhHHHHHHHHHHHCC-CEEEEEeCCCC
Confidence 56653 14777667777899999999 79999999764
No 89
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=25.56 E-value=76 Score=28.77 Aligned_cols=32 Identities=38% Similarity=0.350 Sum_probs=23.1
Q ss_pred CCCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEeee
Q 023840 100 PSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD 145 (276)
Q Consensus 100 ~~~PDLVVSGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS~~ 145 (276)
..+||||||=...- ++..|...|+|+|.++..
T Consensus 92 ~~~pDlVIsD~~~~--------------~~~aa~~~giP~i~i~~~ 123 (318)
T PF13528_consen 92 EFRPDLVISDFYPL--------------AALAARRAGIPVIVISNQ 123 (318)
T ss_pred hcCCCEEEEcChHH--------------HHHHHHhcCCCEEEEEeh
Confidence 35899999853211 345667889999999864
No 90
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=25.15 E-value=96 Score=30.16 Aligned_cols=44 Identities=30% Similarity=0.200 Sum_probs=38.5
Q ss_pred CCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEee
Q 023840 101 SVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISY 144 (276)
Q Consensus 101 ~~PDLVVSGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS~ 144 (276)
++.|.||.|-..=.--|.-+.-.||...|+-|-.+|+|.+.+.-
T Consensus 224 ~~vd~VivGAd~I~~nG~v~NkiGT~~lAl~Ak~~~vPfyV~a~ 267 (344)
T PRK05720 224 GKIDAVIVGADRIAANGDVANKIGTYQLAIAAKYHGVPFYVAAP 267 (344)
T ss_pred cCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEecc
Confidence 47999999988777777778899999999999999999887754
No 91
>PLN00016 RNA-binding protein; Provisional
Probab=25.13 E-value=93 Score=29.54 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=27.7
Q ss_pred CCeEEEecCCCCCCcCH-HHHHHHHHhcCCccEEEEeeCC
Q 023840 14 KPTIMVTNDDGIDAPGL-RSLVRVLVSTNRYTVQVCAPDS 52 (276)
Q Consensus 14 ~~~ILlTNDDGi~spGi-~aL~~aL~~~g~~~V~VVAP~~ 52 (276)
.++|||||-+|=.+-.| +.|++.|.+.| |+|+++.-..
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G-~~V~~l~R~~ 90 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAG-HEVTLFTRGK 90 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCC-CEEEEEecCC
Confidence 46899998887654322 34788888888 7999887543
No 92
>PRK02858 germination protease; Provisional
Probab=24.71 E-value=1.7e+02 Score=28.94 Aligned_cols=72 Identities=28% Similarity=0.423 Sum_probs=44.0
Q ss_pred ecCChHHHHHHhhhcccCCCCCcEEE---------------------ecCCCCCCCccc--cccchhHHHHHHHHHcCCC
Q 023840 82 VSGTPADCASLGVSQALFPSVPDLVI---------------------SGINMGSNCGYH--VVYSGTVAGAREAFFHGVP 138 (276)
Q Consensus 82 v~GTPaDcV~~al~~~l~~~~PDLVV---------------------SGIN~G~N~G~~--v~ySGTVgAA~Ea~~~GiP 138 (276)
..|-=..=+..|+-. ..|||+|| .||+.|.=.|.. -+..- ..|||
T Consensus 167 ~TGiET~EIIkgIVe---k~KPD~VIaIDALAaRs~~Rln~TIQIsDTGI~PGSGVGN~R~~l~~e---------tLGVP 234 (369)
T PRK02858 167 ITGIETSDIIYGIIE---KTKPDFVIAIDALAARSIERVNTTIQISDTGIHPGSGVGNKRKELSKE---------TLGIP 234 (369)
T ss_pred ccchhHHHHHHHHHH---hhCCCEEEEechhhcCchhhccCeEEecCCCcCCCCCcCccccccCHH---------HcCCC
Confidence 344444444445532 34899997 599999877753 23322 46999
Q ss_pred EEEEeeecCCCCCCCcccHHHHHHHHHHHHHHHHHH
Q 023840 139 SVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEI 174 (276)
Q Consensus 139 aIAvS~~~~~~~~~~~~~~~aa~~~~~li~~l~~~~ 174 (276)
.||+-.... .+ |+..+.+.++.+++.+
T Consensus 235 VIAIGVPTV------Vd---A~tI~~Dtid~~l~~~ 261 (369)
T PRK02858 235 VIAIGVPTV------VD---AVTITSDTIDFILKHF 261 (369)
T ss_pred EEEEcCCee------ec---hHHHHHHHHHHHHHHH
Confidence 999976432 22 5566666677666554
No 93
>PF00381 PTS-HPr: PTS HPr component phosphorylation site; InterPro: IPR005698 The histidine-containing phosphocarrier protein (HPr) is a central component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), which transfers metabolic carbohydrates across the cell membrane in many bacterial species [, ]. PTS catalyses the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is as follows: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to Enzyme I (EI) of the PTS, which in turn transfers it to the phosphoryl carrier protein (HPr) [, ]. Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease complex (enzymes EII/EIII). HPr [, ] is a small cytoplasmic protein of 70 to 90 amino acid residues. In some bacteria, HPr is a domain in a larger protein that includes a EIII(Fru) (IIA) domain and in some cases also the EI domain. A conserved histidine in the N-terminal section of HPr serves as an acceptor for the phosphoryl group of EI. In the central part of HPr, there is a conserved serine which (in Gram-positive bacteria only) is phosphorylated by an ATP-dependent protein kinase; a process which probably play a regulatory role in sugar transport. The overall architecture of the HPr domain has been described as an open faced beta-sandwich in which a beta-sheet is packed against three alpha-helices. Regulatory phosphorylation at the conserved Ser residue does not appear to induce large structural changes to the HPr domain, in particular in the region of the active site [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TXE_A 1QR5_A 1RZR_S 2NZU_L 2OEN_L 2NZV_L 1Y51_B 1Y4Y_A 1Y50_A 2HPR_A ....
Probab=24.70 E-value=1e+02 Score=23.18 Aligned_cols=33 Identities=15% Similarity=0.306 Sum_probs=28.0
Q ss_pred CeEEEecCCCCCCcCHHHHHHHHHhcCCccEEEE
Q 023840 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVC 48 (276)
Q Consensus 15 ~~ILlTNDDGi~spGi~aL~~aL~~~g~~~V~VV 48 (276)
-.+.|+|+.|+++---..|++..++.. .+|++.
T Consensus 4 ~~~~i~~~~GlHaRpa~~lv~~a~~~~-~~i~i~ 36 (84)
T PF00381_consen 4 REVTIKNPNGLHARPAAELVQIASKFD-SDITIR 36 (84)
T ss_dssp EEEEEESTTSSSHHHHHHHHHHHHTSS-SEEEEE
T ss_pred EEEEEcCCCcccHHHHHHHHHHHhhCC-CEEEEE
Confidence 358899999999988888999998876 578776
No 94
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=24.26 E-value=65 Score=29.47 Aligned_cols=45 Identities=24% Similarity=0.124 Sum_probs=35.4
Q ss_pred CCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEeeec
Q 023840 102 VPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDW 146 (276)
Q Consensus 102 ~PDLVVSGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS~~~ 146 (276)
..|.||.|--.=..-|.-+.-.||...|+-|-.+++|.+.++-.+
T Consensus 176 ~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~~~vPv~v~~~~~ 220 (282)
T PF01008_consen 176 DVDKVLIGADAVLANGGVVNKVGTLQLALAAKEFNVPVYVLAESY 220 (282)
T ss_dssp TESEEEEE-SEEETTS-EEEETTHHHHHHHHHHTT-EEEEE--GG
T ss_pred hCCeeEEeeeEEecCCCEeehhhHHHHHHHHHhhCCCEEEEcccc
Confidence 389999998877777877889999999999999999999998653
No 95
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=24.21 E-value=89 Score=29.66 Aligned_cols=43 Identities=23% Similarity=0.092 Sum_probs=38.3
Q ss_pred CCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEee
Q 023840 102 VPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISY 144 (276)
Q Consensus 102 ~PDLVVSGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS~ 144 (276)
+.|.||.|-..=.--|.-+.-+||...|+-|-.+++|.+.++-
T Consensus 188 ~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~~~vPv~V~a~ 230 (310)
T PRK08535 188 DVDKVVVGADAITANGAVINKIGTSQIALAAHEARVPFMVAAE 230 (310)
T ss_pred hCCEEEECccEEecCCCEEeHHhHHHHHHHHHHhCCCEEEecc
Confidence 5999999988777777778899999999999999999999864
No 96
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=23.95 E-value=1.1e+02 Score=29.73 Aligned_cols=43 Identities=28% Similarity=0.219 Sum_probs=37.8
Q ss_pred CCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEe
Q 023840 101 SVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS 143 (276)
Q Consensus 101 ~~PDLVVSGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS 143 (276)
++.|.||.|-..=.--|.-+.-.||...|+-|-.+|||.+.+.
T Consensus 214 ~~Vd~VivGAd~I~aNG~v~NKiGT~~lAl~Ak~~~VPfyV~a 256 (329)
T PRK06371 214 KEIDLVIVGADRIASNGDFANKIGTYEKAVLAKVNGIPFYVAA 256 (329)
T ss_pred cCCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEec
Confidence 4799999998776666777788999999999999999999885
No 97
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=23.42 E-value=1.3e+02 Score=25.90 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=23.5
Q ss_pred CCeEEEecCCCCCCcC-HHHHHHHHHhcCCccE
Q 023840 14 KPTIMVTNDDGIDAPG-LRSLVRVLVSTNRYTV 45 (276)
Q Consensus 14 ~~~ILlTNDDGi~spG-i~aL~~aL~~~g~~~V 45 (276)
..+|||. ||.+++-+ ++++.+.|+++| .++
T Consensus 120 gk~VLIV-DDiitTG~Tl~aa~~~L~~~G-A~~ 150 (178)
T PRK07322 120 GKRVAIV-DDVVSTGGTLTALERLVERAG-GQV 150 (178)
T ss_pred CCEEEEE-eccccccHHHHHHHHHHHHcC-CEE
Confidence 4578888 99998743 888999999998 453
No 98
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=23.31 E-value=1.2e+02 Score=26.69 Aligned_cols=30 Identities=17% Similarity=0.162 Sum_probs=22.9
Q ss_pred EEEecCCCCCCcCHHHHHHHHHhcCCccEEEEe
Q 023840 17 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCA 49 (276)
Q Consensus 17 ILlTNDDGi~spGi~aL~~aL~~~g~~~V~VVA 49 (276)
||+| ||.....+...++.|++.|. .|++|+
T Consensus 113 illT--DG~s~~~~~~~a~~lk~~gv-~i~~Vg 142 (224)
T cd01475 113 IVVT--DGRPQDDVSEVAAKARALGI-EMFAVG 142 (224)
T ss_pred EEEc--CCCCcccHHHHHHHHHHCCc-EEEEEe
Confidence 6666 77776778888999998883 677664
No 99
>PLN00414 glycosyltransferase family protein
Probab=23.11 E-value=4.5e+02 Score=26.18 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=20.6
Q ss_pred HHHHHHHHHhcCCccEEEEeeCCCCCcC
Q 023840 30 LRSLVRVLVSTNRYTVQVCAPDSEKSAV 57 (276)
Q Consensus 30 i~aL~~aL~~~g~~~V~VVAP~~~qSg~ 57 (276)
+..|++.|.++| ++|+++.+..+.+-.
T Consensus 21 mL~LAk~Las~G-~~VT~vtt~~~~~~i 47 (446)
T PLN00414 21 YLHLANKLAEKG-HRVTFFLPKKAHKQL 47 (446)
T ss_pred HHHHHHHHHhCC-CEEEEEeCCchhhhh
Confidence 345889999999 699999988765433
No 100
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=23.08 E-value=1.3e+02 Score=24.42 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=20.9
Q ss_pred eEEEecCCCCCCcCHHHHHHHHHh-cCCccEEEEee
Q 023840 16 TIMVTNDDGIDAPGLRSLVRVLVS-TNRYTVQVCAP 50 (276)
Q Consensus 16 ~ILlTNDDGi~spGi~aL~~aL~~-~g~~~V~VVAP 50 (276)
-||+| ||....+...+++.|++ .| ..|+.|+-
T Consensus 107 villT--DG~~~~~~~~~~~~l~~~~~-v~v~~vg~ 139 (163)
T cd01476 107 VVVLT--DGRSHDDPEKQARILRAVPN-IETFAVGT 139 (163)
T ss_pred EEEEC--CCCCCCchHHHHHHHhhcCC-CEEEEEEC
Confidence 35665 56666677788888887 55 35665543
No 101
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=22.67 E-value=1e+02 Score=29.07 Aligned_cols=43 Identities=26% Similarity=0.219 Sum_probs=37.9
Q ss_pred CCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEee
Q 023840 102 VPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISY 144 (276)
Q Consensus 102 ~PDLVVSGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS~ 144 (276)
+.|.||.|-..=.--|.-+.-.||...|+-|..+|||.+.++-
T Consensus 177 ~vd~VivGAD~I~~nG~v~NKiGT~~lA~~Ak~~~vPfyV~a~ 219 (275)
T PRK08335 177 EATLALVGADNVTRDGYVVNKAGTYLLALACHDNGVPFYVAAE 219 (275)
T ss_pred hCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEECc
Confidence 4999999988777677778889999999999999999998853
No 102
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=22.59 E-value=1.1e+02 Score=30.52 Aligned_cols=38 Identities=18% Similarity=0.217 Sum_probs=29.0
Q ss_pred CCCeEEEecCCCCCCc-CHHHHHHHHHhcCCccEEEEeeC
Q 023840 13 HKPTIMVTNDDGIDAP-GLRSLVRVLVSTNRYTVQVCAPD 51 (276)
Q Consensus 13 ~~~~ILlTNDDGi~sp-Gi~aL~~aL~~~g~~~V~VVAP~ 51 (276)
+..+|||. ||.+.+- =+++.++.|+++|-.+|.+++-.
T Consensus 339 ~gK~VlLV-DDvitTG~Tl~~a~~~Lr~aGA~~V~v~~~h 377 (445)
T PRK08525 339 EGKRIVVI-DDSIVRGTTSKKIVSLLRAAGAKEIHLRIAC 377 (445)
T ss_pred CCCeEEEE-ecccCcHHHHHHHHHHHHhcCCCEEEEEEEC
Confidence 35678888 9999863 38889999999996677766543
No 103
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=22.42 E-value=33 Score=33.66 Aligned_cols=36 Identities=19% Similarity=0.143 Sum_probs=21.6
Q ss_pred eEEEecCCCCCCcCHHHHHHHHHhcCCccEEEEeeCC
Q 023840 16 TIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDS 52 (276)
Q Consensus 16 ~ILlTNDDGi~spGi~aL~~aL~~~g~~~V~VVAP~~ 52 (276)
+|||..-.+=+.--++.+.++|.+.| |+|+|+.|..
T Consensus 2 kvLv~p~~~SH~~~~~~l~~~L~~rG-H~VTvl~~~~ 37 (500)
T PF00201_consen 2 KVLVFPMAYSHFIFMRPLAEELAERG-HNVTVLTPSP 37 (500)
T ss_dssp ----------SHHHHHHHHHHHHHH--TTSEEEHHHH
T ss_pred EEEEeCCCcCHHHHHHHHHHHHHhcC-CceEEEEeec
Confidence 35555544444556889999999999 8999999965
No 104
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=22.38 E-value=1.2e+02 Score=29.28 Aligned_cols=44 Identities=30% Similarity=0.160 Sum_probs=37.9
Q ss_pred CCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEee
Q 023840 101 SVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISY 144 (276)
Q Consensus 101 ~~PDLVVSGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS~ 144 (276)
++.|.||.|-..=.--|.-+.-.||-..|+-|-.+|+|.+.+.-
T Consensus 224 ~~vd~VivGAd~v~~nG~v~nkiGT~~lA~~Ak~~~vPfyV~a~ 267 (331)
T TIGR00512 224 GEVDAVIVGADRIAANGDTANKIGTYQLAVLAKHHGVPFYVAAP 267 (331)
T ss_pred cCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEecc
Confidence 47999999987766667668889999999999999999998753
No 105
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=22.34 E-value=1.3e+02 Score=24.53 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=27.0
Q ss_pred CCCCCCcCHHHHHHHHHhcCCccEEEEeeCCCC
Q 023840 22 DDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEK 54 (276)
Q Consensus 22 DDGi~spGi~aL~~aL~~~g~~~V~VVAP~~~q 54 (276)
-||..--.+..+++.|+.++ ++|.+++|..+.
T Consensus 6 ~~gf~~~e~~~~~~~~~~a~-~~v~~vs~~~~~ 37 (163)
T cd03135 6 ADGFEEIEAVTPVDVLRRAG-IEVTTASLEKKL 37 (163)
T ss_pred cCCcchHHHHHHHHHHHHCC-CEEEEEEcCCCc
Confidence 36777778888999999998 799999998765
No 106
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=21.60 E-value=8.4e+02 Score=24.67 Aligned_cols=32 Identities=16% Similarity=0.246 Sum_probs=20.7
Q ss_pred CeEEEecCCCCCCcCHHHHHHHHHhc--CCccEEEEeeCC
Q 023840 15 PTIMVTNDDGIDAPGLRSLVRVLVST--NRYTVQVCAPDS 52 (276)
Q Consensus 15 ~~ILlTNDDGi~spGi~aL~~aL~~~--g~~~V~VVAP~~ 52 (276)
|||||.---|- -++|+.+|++. + ++|+++ |..
T Consensus 1 mkVLviG~Ggr----ehal~~~l~~s~~g-~~v~~~-~g~ 34 (486)
T PRK05784 1 MKVLLVGDGAR----EHALAEALEKSTKG-YKVYAL-SSY 34 (486)
T ss_pred CEEEEECCchh----HHHHHHHHHhCCCC-CEEEEE-ECC
Confidence 68888543332 46788888876 5 466666 653
No 107
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=21.56 E-value=1.5e+02 Score=27.69 Aligned_cols=42 Identities=5% Similarity=0.010 Sum_probs=28.4
Q ss_pred CCCCeEEEecCCCC--CCcCHHHHHHHHHhcCCccEEEEeeCCCC
Q 023840 12 DHKPTIMVTNDDGI--DAPGLRSLVRVLVSTNRYTVQVCAPDSEK 54 (276)
Q Consensus 12 ~~~~~ILlTNDDGi--~spGi~aL~~aL~~~g~~~V~VVAP~~~q 54 (276)
.+.|||||--++-- +-.-.++|.++|++.| ++|.+++|....
T Consensus 2 ~~~~rili~t~~~G~GH~~~a~al~~~l~~~g-~~~~~~~d~~~~ 45 (380)
T PRK13609 2 IKNPKVLILTAHYGNGHVQVAKTLEQTFRQKG-IKDVIVCDLFGE 45 (380)
T ss_pred CCCCeEEEEEcCCCchHHHHHHHHHHHHHhcC-CCcEEEEEhHHh
Confidence 45678887765421 1223677888998888 678888887753
No 108
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=21.54 E-value=1.2e+02 Score=27.87 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=16.6
Q ss_pred HHHHHHHHcCCCEEEEeee
Q 023840 127 AGAREAFFHGVPSVSISYD 145 (276)
Q Consensus 127 gAA~Ea~~~GiPaIAvS~~ 145 (276)
+-..|++.+|+|+|.+...
T Consensus 251 ~T~~E~~a~g~P~i~i~~~ 269 (279)
T TIGR03590 251 STSWERCCLGLPSLAICLA 269 (279)
T ss_pred hHHHHHHHcCCCEEEEEec
Confidence 3488999999999999874
No 109
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=21.48 E-value=1.4e+02 Score=23.67 Aligned_cols=48 Identities=25% Similarity=0.425 Sum_probs=35.5
Q ss_pred CCCCCeEEEecCC------CC-CCcCHHHHHHHHHhcCCccEEEEeeCCCCCcCcc
Q 023840 11 SDHKPTIMVTNDD------GI-DAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSH 59 (276)
Q Consensus 11 ~~~~~~ILlTNDD------Gi-~spGi~aL~~aL~~~g~~~V~VVAP~~~qSg~g~ 59 (276)
...++||.||==- |- ...-++.|.++|.+.+ .||++.+++.+..+.|+
T Consensus 37 ~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ld-vEvV~a~~~~~~~~lg~ 91 (97)
T PF06722_consen 37 PPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLD-VEVVVALPAAQRAELGE 91 (97)
T ss_dssp STSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSS-SEEEEEETTCCCGGCCS
T ss_pred CCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCC-cEEEEECCHHHHHhhCC
Confidence 3567899998211 11 1246888999999987 69999999999887763
No 110
>PRK12827 short chain dehydrogenase; Provisional
Probab=21.38 E-value=2.1e+02 Score=24.40 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=23.8
Q ss_pred CCCeEEEecCCCCCCcCH-HHHHHHHHhcCCccEEEEee
Q 023840 13 HKPTIMVTNDDGIDAPGL-RSLVRVLVSTNRYTVQVCAP 50 (276)
Q Consensus 13 ~~~~ILlTNDDGi~spGi-~aL~~aL~~~g~~~V~VVAP 50 (276)
..++||||=- +.|| +.|++.|.++| ++|++++.
T Consensus 5 ~~~~ilItGa----sg~iG~~la~~l~~~g-~~v~~~~~ 38 (249)
T PRK12827 5 DSRRVLITGG----SGGLGRAIAVRLAADG-ADVIVLDI 38 (249)
T ss_pred CCCEEEEECC----CChHHHHHHHHHHHCC-CeEEEEcC
Confidence 4578999932 2344 56888999988 78888764
No 111
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=21.38 E-value=79 Score=26.95 Aligned_cols=23 Identities=48% Similarity=0.616 Sum_probs=18.1
Q ss_pred chhHHHHHHHHHcCCCEEEEeee
Q 023840 123 SGTVAGAREAFFHGVPSVSISYD 145 (276)
Q Consensus 123 SGTVgAA~Ea~~~GiPaIAvS~~ 145 (276)
|+-+=++.-|...|+|+|+++++
T Consensus 263 s~RlH~~I~a~~~g~P~i~i~y~ 285 (286)
T PF04230_consen 263 SMRLHGAILALSLGVPVIAISYD 285 (286)
T ss_pred ecCCHHHHHHHHcCCCEEEEecC
Confidence 44455677888999999999874
No 112
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=21.37 E-value=1.3e+02 Score=28.17 Aligned_cols=44 Identities=25% Similarity=0.108 Sum_probs=37.7
Q ss_pred CCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEeee
Q 023840 102 VPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD 145 (276)
Q Consensus 102 ~PDLVVSGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS~~ 145 (276)
+.|.|+-|-..=.--|.-+.-.||-..|+-|..+++|.+.+.-.
T Consensus 151 ~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~~vPv~V~~~s 194 (253)
T PRK06372 151 NVDAVIVGSDSVLYDGGLIHKNGTFPLALCARYLKKPFYSLTIS 194 (253)
T ss_pred hCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEEeec
Confidence 58999999877666677778899999999999999999987654
No 113
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=21.25 E-value=1.3e+02 Score=28.49 Aligned_cols=44 Identities=23% Similarity=0.020 Sum_probs=38.6
Q ss_pred CCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEee
Q 023840 101 SVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISY 144 (276)
Q Consensus 101 ~~PDLVVSGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS~ 144 (276)
++.|.|+-|-..=.--|.-+.-.||-..|+-|..+|+|.+.++-
T Consensus 196 ~~vd~VlvGAd~v~~nG~v~nk~GT~~lA~~Ak~~~vPv~V~a~ 239 (303)
T TIGR00524 196 GEIDAVIVGADRIARNGDVANKIGTYQLAVLAKEFRIPFFVAAP 239 (303)
T ss_pred cCCCEEEEcccEEecCCCEeEhhhHHHHHHHHHHhCCCEEEecc
Confidence 47999999987776677778889999999999999999999864
No 114
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.25 E-value=1.6e+02 Score=25.05 Aligned_cols=39 Identities=21% Similarity=0.090 Sum_probs=25.2
Q ss_pred cCCCCCCeEEEecCCCCCCcCHHHHHHHHHhcCCccEEEEeeC
Q 023840 9 VNSDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPD 51 (276)
Q Consensus 9 m~~~~~~~ILlTNDDGi~spGi~aL~~aL~~~g~~~V~VVAP~ 51 (276)
|.+.+.++||||--.|.- | +.|++.|.+.| |+|+++...
T Consensus 1 ~~~~~~~~vlItGasg~i--G-~~l~~~l~~~g-~~v~~~~~~ 39 (249)
T PRK12825 1 MGSLMGRVALVTGAARGL--G-RAIALRLARAG-ADVVVHYRS 39 (249)
T ss_pred CCCCCCCEEEEeCCCchH--H-HHHHHHHHHCC-CeEEEEeCC
Confidence 333344689999766542 2 45788888888 687664443
No 115
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=21.12 E-value=1.8e+02 Score=27.29 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=28.4
Q ss_pred CCCCeEEEecCCCCCCcCH-HHHHHHHHhcCCccEEEEeeCCC
Q 023840 12 DHKPTIMVTNDDGIDAPGL-RSLVRVLVSTNRYTVQVCAPDSE 53 (276)
Q Consensus 12 ~~~~~ILlTNDDGi~spGi-~aL~~aL~~~g~~~V~VVAP~~~ 53 (276)
....++||| =.|-|| +++++.|.+.| ++|++||-..+
T Consensus 4 ~~~~~~lIT----GASsGIG~~~A~~lA~~g-~~liLvaR~~~ 41 (265)
T COG0300 4 MKGKTALIT----GASSGIGAELAKQLARRG-YNLILVARRED 41 (265)
T ss_pred CCCcEEEEE----CCCchHHHHHHHHHHHCC-CEEEEEeCcHH
Confidence 456689999 345576 56899999999 79999987654
No 116
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=20.85 E-value=3.3e+02 Score=26.85 Aligned_cols=49 Identities=27% Similarity=0.304 Sum_probs=28.5
Q ss_pred HHHHHHHHcCCCEEEEee-ecCCCCCCCccc----HHHHHHHHHHHHHHHHHHH
Q 023840 127 AGAREAFFHGVPSVSISY-DWVGGKSNVNDY----TLAAEACLPIINAILAEIR 175 (276)
Q Consensus 127 gAA~Ea~~~GiPaIAvS~-~~~~~~~~~~~~----~~aa~~~~~li~~l~~~~~ 175 (276)
+.|.-|..+|+|.+++=. ....+.....+| +.|++.+.+++.++++++.
T Consensus 175 ava~va~~~~vp~~~iR~iSD~a~~~~~~~~~~~~~~a~~~~~~~v~~~l~~~~ 228 (459)
T PRK06698 175 AIGHVAYINEVPFLVIRCISDSADDEAQISYDDFAKTAANYCSEIIVEMLKTIS 228 (459)
T ss_pred HHHHHHHHcCCCEEEEEEeccCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556678999999833 211112223344 3666777777777776553
No 117
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=20.62 E-value=1.1e+02 Score=27.78 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=17.9
Q ss_pred ccchhHHHHHHHHHcCCCEEEEee
Q 023840 121 VYSGTVAGAREAFFHGVPSVSISY 144 (276)
Q Consensus 121 ~ySGTVgAA~Ea~~~GiPaIAvS~ 144 (276)
+.||+ ...+||..+|+|.|++..
T Consensus 256 ~~~g~-~~l~Ea~~~g~Pvv~~~~ 278 (348)
T TIGR01133 256 SRAGA-STVAELAAAGVPAILIPY 278 (348)
T ss_pred ECCCh-hHHHHHHHcCCCEEEeeC
Confidence 45773 367799999999999753
No 118
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=20.50 E-value=1.4e+02 Score=27.02 Aligned_cols=30 Identities=10% Similarity=0.076 Sum_probs=22.8
Q ss_pred CCCCCcCHHHHHHHHHhcCCccEEEEeeCCC
Q 023840 23 DGIDAPGLRSLVRVLVSTNRYTVQVCAPDSE 53 (276)
Q Consensus 23 DGi~spGi~aL~~aL~~~g~~~V~VVAP~~~ 53 (276)
+|+.-.=+-.-++.|+++| ++|.++.|...
T Consensus 21 tG~~~~El~~p~~~l~~aG-~~V~~aS~~g~ 50 (232)
T cd03148 21 TGNHPVEMLLPLYHLHAAG-FDFDVATLSGL 50 (232)
T ss_pred CCCcHHHHHHHHHHHHHCC-CEEEEEeCCCC
Confidence 4444445667799999999 79999999653
Done!