Query 023841
Match_columns 276
No_of_seqs 157 out of 1908
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 07:02:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023841.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023841hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 99.9 2E-26 4.3E-31 193.7 5.2 243 23-274 77-362 (483)
2 KOG2120 SCF ubiquitin ligase, 99.9 5E-21 1.1E-25 155.2 10.9 178 16-202 97-296 (419)
3 KOG4341 F-box protein containi 99.8 7.7E-20 1.7E-24 154.3 3.5 236 31-274 138-388 (483)
4 KOG1947 Leucine rich repeat pr 99.7 4.2E-16 9.1E-21 141.1 11.8 86 82-171 241-326 (482)
5 KOG1947 Leucine rich repeat pr 99.6 4.7E-15 1E-19 134.2 11.1 218 49-274 180-417 (482)
6 KOG2120 SCF ubiquitin ligase, 99.4 8.7E-14 1.9E-18 113.5 3.3 188 58-269 186-374 (419)
7 cd00116 LRR_RI Leucine-rich re 99.4 7.3E-12 1.6E-16 107.5 15.2 199 55-269 79-289 (319)
8 cd00116 LRR_RI Leucine-rich re 99.4 7.4E-12 1.6E-16 107.5 14.6 195 57-267 108-316 (319)
9 KOG1909 Ran GTPase-activating 99.0 9.9E-10 2.1E-14 91.7 7.8 203 52-269 88-309 (382)
10 KOG3207 Beta-tubulin folding c 99.0 1E-10 2.3E-15 100.1 0.1 197 52-269 141-337 (505)
11 KOG1909 Ran GTPase-activating 98.7 3.8E-08 8.2E-13 82.4 6.7 197 57-269 58-281 (382)
12 KOG3207 Beta-tubulin folding c 98.7 7.2E-09 1.6E-13 89.0 2.4 113 81-202 118-232 (505)
13 KOG3665 ZYG-1-like serine/thre 98.6 4.7E-08 1E-12 91.5 4.6 146 58-215 123-272 (699)
14 KOG3665 ZYG-1-like serine/thre 98.6 3.9E-07 8.5E-12 85.4 10.3 165 82-267 120-284 (699)
15 PF12937 F-box-like: F-box-lik 98.5 7.5E-08 1.6E-12 58.0 2.9 46 17-64 1-46 (47)
16 PLN00113 leucine-rich repeat r 98.5 2.9E-07 6.2E-12 90.8 7.6 38 228-269 282-319 (968)
17 KOG3864 Uncharacterized conser 98.4 2E-07 4.4E-12 72.6 4.0 88 115-205 102-189 (221)
18 PLN00113 leucine-rich repeat r 98.4 4.7E-07 1E-11 89.3 7.2 108 56-176 139-246 (968)
19 KOG3864 Uncharacterized conser 98.4 5.2E-07 1.1E-11 70.3 5.1 88 86-180 103-190 (221)
20 PF14580 LRR_9: Leucine-rich r 98.1 3.1E-07 6.8E-12 71.4 -1.8 136 81-242 16-152 (175)
21 KOG4194 Membrane glycoprotein 98.0 1.3E-06 2.8E-11 78.2 0.8 12 164-175 315-326 (873)
22 PLN03210 Resistant to P. syrin 98.0 1.2E-05 2.6E-10 80.6 7.7 86 81-178 631-716 (1153)
23 PF14580 LRR_9: Leucine-rich r 98.0 2.8E-06 6E-11 66.1 1.6 128 58-202 20-150 (175)
24 smart00367 LRR_CC Leucine-rich 97.8 2.3E-05 4.9E-10 40.6 3.1 24 191-214 1-24 (26)
25 KOG4194 Membrane glycoprotein 97.8 6.3E-06 1.4E-10 73.9 1.2 58 141-202 174-231 (873)
26 PLN03210 Resistant to P. syrin 97.7 4.4E-05 9.6E-10 76.6 4.6 84 113-207 801-884 (1153)
27 KOG2982 Uncharacterized conser 97.7 9.9E-06 2.1E-10 67.0 -0.0 198 54-264 68-285 (418)
28 smart00367 LRR_CC Leucine-rich 97.6 7.8E-05 1.7E-09 38.5 3.0 22 166-187 2-23 (26)
29 COG5238 RNA1 Ran GTPase-activa 97.6 0.0021 4.5E-08 53.0 11.8 177 55-244 90-286 (388)
30 PF00646 F-box: F-box domain; 97.4 0.0001 2.2E-09 44.3 2.4 34 17-51 3-36 (48)
31 COG5238 RNA1 Ran GTPase-activa 97.4 0.00073 1.6E-08 55.6 7.8 15 255-269 239-253 (388)
32 smart00256 FBOX A Receptor for 97.3 0.00019 4.1E-09 41.4 2.6 37 23-60 3-39 (41)
33 KOG4308 LRR-containing protein 96.9 0.00049 1.1E-08 62.2 2.0 128 81-213 112-253 (478)
34 KOG0618 Serine/threonine phosp 96.9 0.00011 2.3E-09 69.5 -2.4 107 85-203 360-487 (1081)
35 KOG4308 LRR-containing protein 96.8 0.00017 3.8E-09 65.1 -1.5 122 86-213 89-224 (478)
36 KOG0618 Serine/threonine phosp 96.8 0.0011 2.4E-08 62.9 3.4 116 81-211 380-518 (1081)
37 KOG2982 Uncharacterized conser 96.6 0.0013 2.9E-08 54.8 2.2 102 88-197 49-151 (418)
38 PF13516 LRR_6: Leucine Rich r 96.5 0.0028 6E-08 31.9 2.3 23 191-214 1-23 (24)
39 KOG2739 Leucine-rich acidic nu 96.4 0.00085 1.8E-08 54.7 0.1 86 113-201 64-152 (260)
40 PF13855 LRR_8: Leucine rich r 96.3 0.00016 3.5E-09 45.9 -4.0 13 190-202 47-59 (61)
41 PF13855 LRR_8: Leucine rich r 96.1 0.00027 5.8E-09 44.9 -3.4 36 139-176 24-59 (61)
42 PF12799 LRR_4: Leucine Rich r 96.1 0.0058 1.2E-07 35.9 2.6 36 167-206 2-37 (44)
43 KOG1259 Nischarin, modulator o 96.0 0.0039 8.4E-08 52.2 2.0 37 230-269 374-410 (490)
44 PLN03150 hypothetical protein; 95.9 0.014 2.9E-07 55.1 5.4 36 139-176 465-500 (623)
45 KOG1859 Leucine-rich repeat pr 95.9 0.001 2.2E-08 61.7 -2.1 95 166-267 187-288 (1096)
46 PF13516 LRR_6: Leucine Rich r 95.9 0.0074 1.6E-07 30.3 2.0 22 166-188 2-23 (24)
47 KOG2123 Uncharacterized conser 95.5 0.0047 1E-07 51.1 0.8 117 82-215 17-137 (388)
48 KOG4237 Extracellular matrix p 95.4 0.0095 2.1E-07 51.6 2.1 77 188-269 270-357 (498)
49 KOG0444 Cytoskeletal regulator 95.3 0.0028 6.1E-08 58.1 -1.3 187 58-269 174-373 (1255)
50 PRK15387 E3 ubiquitin-protein 95.3 0.054 1.2E-06 52.0 6.9 94 84-206 222-315 (788)
51 PF12799 LRR_4: Leucine Rich r 95.2 0.019 4.1E-07 33.7 2.4 13 164-176 22-34 (44)
52 KOG4658 Apoptotic ATPase [Sign 95.0 0.027 5.9E-07 54.9 4.3 18 256-273 768-785 (889)
53 PLN03150 hypothetical protein; 95.0 0.034 7.4E-07 52.4 4.7 81 116-202 420-500 (623)
54 PRK15387 E3 ubiquitin-protein 94.9 0.038 8.3E-07 53.0 4.9 12 83-94 241-252 (788)
55 KOG1259 Nischarin, modulator o 94.5 0.017 3.7E-07 48.4 1.4 79 81-175 281-361 (490)
56 KOG1859 Leucine-rich repeat pr 94.5 0.023 4.9E-07 53.2 2.1 124 113-269 108-243 (1096)
57 PRK15370 E3 ubiquitin-protein 94.0 0.2 4.3E-06 48.3 7.4 11 258-268 367-377 (754)
58 KOG2123 Uncharacterized conser 93.8 0.027 5.8E-07 46.8 1.0 106 113-237 18-124 (388)
59 KOG2739 Leucine-rich acidic nu 93.2 0.038 8.1E-07 45.3 1.1 62 139-202 64-126 (260)
60 smart00368 LRR_RI Leucine rich 93.1 0.18 3.9E-06 26.2 3.3 23 114-137 2-24 (28)
61 KOG0444 Cytoskeletal regulator 92.7 0.042 9.2E-07 50.7 0.7 86 113-207 172-259 (1255)
62 KOG4658 Apoptotic ATPase [Sign 92.5 0.12 2.6E-06 50.6 3.6 18 226-243 713-730 (889)
63 PRK15386 type III secretion pr 92.3 0.35 7.5E-06 43.0 5.8 73 81-175 49-121 (426)
64 KOG1644 U2-associated snRNP A' 92.3 0.041 8.8E-07 43.5 0.1 84 114-202 64-150 (233)
65 smart00368 LRR_RI Leucine rich 92.1 0.29 6.2E-06 25.5 3.2 22 167-189 3-24 (28)
66 KOG0617 Ras suppressor protein 91.8 0.0054 1.2E-07 47.2 -5.1 84 114-208 33-117 (264)
67 PLN03215 ascorbic acid mannose 90.5 0.27 5.9E-06 43.0 3.3 38 16-54 3-41 (373)
68 KOG3763 mRNA export factor TAP 90.4 0.56 1.2E-05 42.7 5.2 87 112-198 216-307 (585)
69 PRK15386 type III secretion pr 90.4 0.4 8.7E-06 42.6 4.2 71 56-149 51-121 (426)
70 KOG1644 U2-associated snRNP A' 89.9 0.73 1.6E-05 36.7 4.9 38 227-266 110-148 (233)
71 PRK15370 E3 ubiquitin-protein 87.5 0.73 1.6E-05 44.5 4.2 22 190-212 413-434 (754)
72 KOG0281 Beta-TrCP (transducin 86.4 0.31 6.8E-06 41.5 1.0 40 24-64 85-124 (499)
73 PF13504 LRR_7: Leucine rich r 84.8 0.58 1.3E-05 21.2 1.1 10 193-202 2-11 (17)
74 KOG0472 Leucine-rich repeat pr 82.0 2.6 5.5E-05 37.3 4.6 28 39-68 372-399 (565)
75 KOG0531 Protein phosphatase 1, 81.4 0.65 1.4E-05 41.6 0.9 79 113-202 117-196 (414)
76 COG4886 Leucine-rich repeat (L 79.8 1.3 2.8E-05 39.2 2.3 138 115-267 141-286 (394)
77 KOG2997 F-box protein FBX9 [Ge 79.0 1.4 3E-05 37.4 2.0 38 23-61 112-154 (366)
78 KOG4579 Leucine-rich repeat (L 76.2 0.45 9.8E-06 35.5 -1.4 104 59-175 29-132 (177)
79 KOG4579 Leucine-rich repeat (L 74.6 1.6 3.4E-05 32.7 1.1 38 162-202 73-110 (177)
80 KOG0472 Leucine-rich repeat pr 70.8 5.5 0.00012 35.3 3.6 98 163-269 432-539 (565)
81 KOG4237 Extracellular matrix p 70.1 2.3 4.9E-05 37.5 1.2 10 114-123 274-283 (498)
82 KOG3763 mRNA export factor TAP 68.3 11 0.00025 34.6 5.2 86 81-172 215-307 (585)
83 KOG3735 Tropomodulin and leiom 67.6 13 0.00027 32.1 5.0 74 114-189 198-277 (353)
84 KOG0531 Protein phosphatase 1, 66.8 1.7 3.8E-05 38.8 -0.2 81 113-207 94-176 (414)
85 PF00560 LRR_1: Leucine Rich R 66.5 2.9 6.3E-05 20.1 0.7 13 193-206 1-13 (22)
86 COG4886 Leucine-rich repeat (L 63.2 4.5 9.8E-05 35.7 1.8 35 113-150 162-196 (394)
87 PF09372 PRANC: PRANC domain; 54.6 13 0.00028 25.6 2.6 27 14-41 69-95 (97)
88 KOG3735 Tropomodulin and leiom 53.1 50 0.0011 28.6 6.1 85 129-215 187-277 (353)
89 KOG0274 Cdc4 and related F-box 47.1 8.4 0.00018 35.8 0.8 47 13-59 103-149 (537)
90 smart00369 LRR_TYP Leucine-ric 37.7 30 0.00065 17.0 1.7 11 192-202 2-12 (26)
91 smart00370 LRR Leucine-rich re 37.7 30 0.00065 17.0 1.7 11 192-202 2-12 (26)
92 PF13306 LRR_5: Leucine rich r 24.2 8.4 0.00018 27.7 -2.6 12 81-92 9-20 (129)
93 PF03382 DUF285: Mycoplasma pr 23.9 37 0.00079 24.4 0.8 8 163-170 58-65 (120)
94 smart00446 LRRcap occurring C- 21.9 72 0.0016 16.3 1.4 15 187-201 8-22 (26)
95 PF13013 F-box-like_2: F-box-l 21.6 96 0.0021 22.1 2.5 26 22-47 25-51 (109)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.93 E-value=2e-26 Score=193.72 Aligned_cols=243 Identities=20% Similarity=0.301 Sum_probs=169.2
Q ss_pred HHHHHHHhcCCCHhhhHHHhccCHHHHHHHhcCCCCccEEecCCccCcchh----------------------------h
Q 023841 23 PKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNR----------------------------L 74 (276)
Q Consensus 23 p~il~~if~~L~~~~l~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~~~~~----------------------------~ 74 (276)
||.+..+|++|+...+.+++++|+. |+..+.+...|+.+++..+....+. .
T Consensus 77 pEl~lkvFS~LDtksl~r~a~~c~~-~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~ss 155 (483)
T KOG4341|consen 77 PELLLKVFSMLDTKSLCRAAQCCTM-WNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVGDSS 155 (483)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH-hhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccccCCcch
Confidence 6899999999999999999999999 6678999999999998875433221 1
Q ss_pred HHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcC
Q 023841 75 VAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVT 154 (276)
Q Consensus 75 l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~ 154 (276)
+..+. .+||++.+|.+.+|.++||..+..++.+| ++|++|++..|..+++..+++++.+||+|+.|++++|+.++
T Consensus 156 lrt~~-~~CpnIehL~l~gc~~iTd~s~~sla~~C----~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~ 230 (483)
T KOG4341|consen 156 LRTFA-SNCPNIEHLALYGCKKITDSSLLSLARYC----RKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQIS 230 (483)
T ss_pred hhHHh-hhCCchhhhhhhcceeccHHHHHHHHHhc----chhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhh
Confidence 11222 56677777777777777777777777766 67777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchh--------------
Q 023841 155 DIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILL-------------- 220 (276)
Q Consensus 155 ~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~-------------- 220 (276)
.+++..+.++|..++.+...||..++++.+..+...++.+-++++..|..+||+++..++.++...
T Consensus 231 ~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~ 310 (483)
T KOG4341|consen 231 GNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDE 310 (483)
T ss_pred cCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchH
Confidence 777777777777777776667766777777766666666777777777777777766555543221
Q ss_pred hHHHHHcCCCccceecccccC-CCCCcceeEEEeeccCCCCceeeeecceecccc
Q 023841 221 MSEFIYHGIRFFQAVQINSSN-GGDHLAFAYIIETNTYKHGKEKHIIETIKTGQQ 274 (276)
Q Consensus 221 l~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 274 (276)
.......++.+|+.+.+..+. ++|. +|..+. ..|+.|+++.+.+|..+.|.
T Consensus 311 ~l~aLg~~~~~L~~l~l~~c~~fsd~-~ft~l~--rn~~~Le~l~~e~~~~~~d~ 362 (483)
T KOG4341|consen 311 VLWALGQHCHNLQVLELSGCQQFSDR-GFTMLG--RNCPHLERLDLEECGLITDG 362 (483)
T ss_pred HHHHHhcCCCceEEEeccccchhhhh-hhhhhh--cCChhhhhhcccccceehhh
Confidence 112344566677777774443 4444 666666 77778888887777776653
No 2
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=5e-21 Score=155.23 Aligned_cols=178 Identities=23% Similarity=0.347 Sum_probs=107.0
Q ss_pred CCCCCCcHHHHHHHhcCCCHhhhHHHhccCHHHHHHHhcCCCCccEEecCCccCcchhhHH-------------------
Q 023841 16 TWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVA------------------- 76 (276)
Q Consensus 16 ~~~~~~~p~il~~if~~L~~~~l~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~------------------- 76 (276)
.|..++ -|++..||+.|...++.+++.||++|++ +..+.++|..+|+..-....+...+
T Consensus 97 ~~~slp-DEill~IFs~L~kk~LL~~~~VC~Rfyr-~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~~p 174 (419)
T KOG2120|consen 97 SWDSLP-DEILLGIFSCLCKKELLKVSGVCKRFYR-LASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMDQP 174 (419)
T ss_pred CcccCC-HHHHHHHHHhccHHHHHHHHHHHHHHhh-ccccccceeeeccCCCccChhHHHHHHhCCeEEEEcchhhhcCc
Confidence 366644 4799999999999999999999999775 6888999999998763322211110
Q ss_pred ---HhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCc
Q 023841 77 ---ALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRV 153 (276)
Q Consensus 77 ---~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l 153 (276)
..+...-..|++|+++. ..++...+..+..-| .+|+.|++.+ ..++|.-+..+++ -.+|++|+++.|..+
T Consensus 175 rlae~~~~frsRlq~lDLS~-s~it~stl~~iLs~C----~kLk~lSlEg-~~LdD~I~~~iAk-N~~L~~lnlsm~sG~ 247 (419)
T KOG2120|consen 175 RLAEHFSPFRSRLQHLDLSN-SVITVSTLHGILSQC----SKLKNLSLEG-LRLDDPIVNTIAK-NSNLVRLNLSMCSGF 247 (419)
T ss_pred hhhhhhhhhhhhhHHhhcch-hheeHHHHHHHHHHH----Hhhhhccccc-cccCcHHHHHHhc-cccceeecccccccc
Confidence 00001112466666665 466666666666655 5566666665 4555555555555 345666666666666
Q ss_pred CHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCC
Q 023841 154 TDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY 202 (276)
Q Consensus 154 ~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c 202 (276)
|..++..+..+|+.|.+|+++.|...++.....++.--+.|.+|+++||
T Consensus 248 t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~ 296 (419)
T KOG2120|consen 248 TENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGY 296 (419)
T ss_pred chhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhh
Confidence 6666666655666666666666533333322222222345555555555
No 3
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.78 E-value=7.7e-20 Score=154.26 Aligned_cols=236 Identities=19% Similarity=0.235 Sum_probs=170.5
Q ss_pred cCCCHhhhHHHhccCHHHHHHHhcCCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHcc
Q 023841 31 TRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCL 110 (276)
Q Consensus 31 ~~L~~~~l~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~ 110 (276)
.+|.-..+..+..|--.-.+.+...++++..+.+.++...++.....+. ++|+.|++|++..|..+|+..++.+++.|
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla-~~C~~l~~l~L~~c~~iT~~~Lk~la~gC- 215 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLA-RYCRKLRHLNLHSCSSITDVSLKYLAEGC- 215 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHH-HhcchhhhhhhcccchhHHHHHHHHHHhh-
Confidence 4555555566666666656677888999999999999888888877777 79999999999999999999999999988
Q ss_pred CCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhc
Q 023841 111 GSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADN 190 (276)
Q Consensus 111 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~ 190 (276)
++|++|+++.|..++..++..+.++|.+++.+.+.||..++++.+..+..+|+-+..+++.+|..+||+++..+...
T Consensus 216 ---~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~ 292 (483)
T KOG4341|consen 216 ---RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG 292 (483)
T ss_pred ---hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence 99999999999999998888888888887777666776666666666665665555555555555555555555555
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCchhh--------------HHHHHcCCCccceecccccC-CCCCcceeEEEeec
Q 023841 191 YQELESLNLTRYVNMILLGLFYIWSNNILLM--------------SEFIYHGIRFFQAVQINSSN-GGDHLAFAYIIETN 255 (276)
Q Consensus 191 ~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l--------------~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~ 255 (276)
|..|+.|..++|..++|..+.++.+++..+. ......+|+.|+.+++.-+- +.|. .+.... .
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~-tL~sls--~ 369 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG-TLASLS--R 369 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh-hHhhhc--c
Confidence 5555555555555555555555555443210 01234556667777774333 3343 466666 8
Q ss_pred cCCCCceeeeecceecccc
Q 023841 256 TYKHGKEKHIIETIKTGQQ 274 (276)
Q Consensus 256 ~~~~L~~l~~~~~~~~~~~ 274 (276)
.||.|+.+.+.-|+.|+|.
T Consensus 370 ~C~~lr~lslshce~itD~ 388 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDE 388 (483)
T ss_pred CCchhccCChhhhhhhhhh
Confidence 9999999999999999885
No 4
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.67 E-value=4.2e-16 Score=141.07 Aligned_cols=86 Identities=29% Similarity=0.604 Sum_probs=39.7
Q ss_pred cCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHH
Q 023841 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 161 (276)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l 161 (276)
.|++|++|+++.|..++|.++..++..| ++|+.|.+.+|..++++++.+++..|++|++|++++|..+++.++..+
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c----~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~ 316 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRC----PNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL 316 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhC----CCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH
Confidence 3444444444444444444444444443 444444444443344444444444444444444444444444444444
Q ss_pred HHhCCCCcEE
Q 023841 162 VKNCKHIIDL 171 (276)
Q Consensus 162 ~~~~~~L~~L 171 (276)
+.+|++|+.|
T Consensus 317 ~~~c~~l~~l 326 (482)
T KOG1947|consen 317 LKNCPNLREL 326 (482)
T ss_pred HHhCcchhhh
Confidence 4444444443
No 5
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.60 E-value=4.7e-15 Score=134.24 Aligned_cols=218 Identities=22% Similarity=0.325 Sum_probs=169.3
Q ss_pred HHHHhcCCCCccEEecCCccCcchhhHHHhccccCCCccEEeccC-CCCCcHHH--HHHHHHHccCCCCCccEEecCCCC
Q 023841 49 HRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEF-AQDIEDRH--LELLKTKCLGSLQDLESLNLNGCQ 125 (276)
Q Consensus 49 ~~~~~~~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~-~~~l~~~~--~~~i~~~~~~~~~~L~~L~l~~c~ 125 (276)
...+....+.++.+.+..+....+..+..+. ..+++|+.|++++ |..+++.. ...+...| ++|+.|+++.|.
T Consensus 180 ~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~----~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 180 LLRLLSSCPLLKRLSLSGCSKITDDSLDALA-LKCPNLEELDLSGCCLLITLSPLLLLLLLSIC----RKLKSLDLSGCG 254 (482)
T ss_pred HHHHHhhCchhhHhhhcccccCChhhHHHHH-hhCchhheecccCcccccccchhHhhhhhhhc----CCcCccchhhhh
Confidence 3344444667777888887766655454555 6899999999987 44444444 34455544 999999999997
Q ss_pred CCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCC---C
Q 023841 126 KISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR---Y 202 (276)
Q Consensus 126 ~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~---c 202 (276)
.++|.++.+++..|++|++|.+.+|..++++++..++..|++|++|++++|..++|.++..+..+|++|+.|.+.. |
T Consensus 255 ~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c 334 (482)
T KOG1947|consen 255 LVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGC 334 (482)
T ss_pred ccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCC
Confidence 7999999999999999999999999889999999999999999999999999999999999988999888776544 4
Q ss_pred CCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCC--------------ceeeeecc
Q 023841 203 VNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHG--------------KEKHIIET 268 (276)
Q Consensus 203 ~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L--------------~~l~~~~~ 268 (276)
..+++.++..+.......+..+....|+.++.+.+.+....+. +..... .+||+| +.|++..|
T Consensus 335 ~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~l--~gc~~l~~~l~~~~~~~~~l~~L~l~~~ 411 (482)
T KOG1947|consen 335 PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDL-GLELSL--RGCPNLTESLELRLCRSDSLRVLNLSDC 411 (482)
T ss_pred ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCc-chHHHh--cCCcccchHHHHHhccCCccceEecccC
Confidence 5688888887766543345567889999999999977775555 544444 677777 66666666
Q ss_pred eecccc
Q 023841 269 IKTGQQ 274 (276)
Q Consensus 269 ~~~~~~ 274 (276)
..+++.
T Consensus 412 ~~~t~~ 417 (482)
T KOG1947|consen 412 RLVTDK 417 (482)
T ss_pred cccccc
Confidence 655543
No 6
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=8.7e-14 Score=113.48 Aligned_cols=188 Identities=16% Similarity=0.253 Sum_probs=144.2
Q ss_pred CccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHh
Q 023841 58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS 137 (276)
Q Consensus 58 ~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 137 (276)
.++.+|++.......... .+ ++.|..|+.|++.+ ..++|.....|+. ..+|+.|++++|+.++..++..+..
T Consensus 186 Rlq~lDLS~s~it~stl~-~i-Ls~C~kLk~lSlEg-~~LdD~I~~~iAk-----N~~L~~lnlsm~sG~t~n~~~ll~~ 257 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLH-GI-LSQCSKLKNLSLEG-LRLDDPIVNTIAK-----NSNLVRLNLSMCSGFTENALQLLLS 257 (419)
T ss_pred hhHHhhcchhheeHHHHH-HH-HHHHHhhhhccccc-cccCcHHHHHHhc-----cccceeeccccccccchhHHHHHHH
Confidence 355677777655443332 22 36899999999998 6899999999887 3899999999999999999999999
Q ss_pred hCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCC-CCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhc
Q 023841 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGC-KNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSN 216 (276)
Q Consensus 138 ~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c-~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~ 216 (276)
.|..|.+|++++|.--++..-..++.--++|..|+++|| .++.+..+.-+.++||+|-.||++.|..+++.-+..+
T Consensus 258 scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~--- 334 (419)
T KOG2120|consen 258 SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF--- 334 (419)
T ss_pred hhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH---
Confidence 999999999999954444433334444578999999998 5677888888999999999999999988888554443
Q ss_pred CchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841 217 NILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 269 (276)
Q Consensus 217 ~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 269 (276)
..++.|+.+.++-++..++-. +++...-|.|..|++.+|-
T Consensus 335 ----------~kf~~L~~lSlsRCY~i~p~~---~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 335 ----------FKFNYLQHLSLSRCYDIIPET---LLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ----------HhcchheeeehhhhcCCChHH---eeeeccCcceEEEEecccc
Confidence 335667888887666555522 3344788999999998874
No 7
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.41 E-value=7.3e-12 Score=107.51 Aligned_cols=199 Identities=19% Similarity=0.171 Sum_probs=125.9
Q ss_pred CCCCccEEecCCccCcc--hhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHH
Q 023841 55 YPSLWLVIDLREMNNAG--NRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGI 132 (276)
Q Consensus 55 ~~~~~~~l~l~~~~~~~--~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~ 132 (276)
..+.++.++++++.... ...+..+. .. ++|++|++++| .+++.++..+........++|+.|++++| .++..+.
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~-~~-~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~ 154 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLL-RS-SSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASC 154 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHh-cc-CcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCC-cCCchHH
Confidence 35677888887766542 22333333 23 67888888875 57766766666554322378888888886 6665444
Q ss_pred HHH---HhhCCCCCeEeccCCCCcCHHHHHHHHHhC---CCCcEEecCCCCCCCHHHHHHHHh---cCCCccEEecCCCC
Q 023841 133 EII---SSTCPELKVFSIYWNVRVTDIGIQHLVKNC---KHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRYV 203 (276)
Q Consensus 133 ~~l---~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~---~~L~~L~l~~c~~ltd~~~~~l~~---~~~~L~~L~l~~c~ 203 (276)
..+ ...+++|++|++++| .+++.++..++..+ ++|++|++++| .+++.++..+.. .+++|+.|++++|
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n- 231 (319)
T cd00116 155 EALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN- 231 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-
Confidence 333 344667888888876 67777666655433 48888888887 677666655443 4678888888887
Q ss_pred CCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEE-eeccCCCCceeeeecce
Q 023841 204 NMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYII-ETNTYKHGKEKHIIETI 269 (276)
Q Consensus 204 ~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~-~~~~~~~L~~l~~~~~~ 269 (276)
.+++.++..++.. ...+.+.|+.++++++.+++. ++..+. ....+++|+.+++.++.
T Consensus 232 ~l~~~~~~~l~~~--------~~~~~~~L~~L~l~~n~i~~~-~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 232 NLTDAGAAALASA--------LLSPNISLLTLSLSCNDITDD-GAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred cCchHHHHHHHHH--------HhccCCCceEEEccCCCCCcH-HHHHHHHHHhcCCCccEEECCCCC
Confidence 6888777665431 112446677777777777654 322221 11345677777776654
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.40 E-value=7.4e-12 Score=107.46 Aligned_cols=195 Identities=18% Similarity=0.158 Sum_probs=139.3
Q ss_pred CCccEEecCCccCcchhhHHH--hccccC-CCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHH
Q 023841 57 SLWLVIDLREMNNAGNRLVAA--LSIPRY-RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIE 133 (276)
Q Consensus 57 ~~~~~l~l~~~~~~~~~~l~~--l~~~~~-~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 133 (276)
+.++.++++++...... +.. -.+..+ ++|+.|++++| .++..+...+...+ ..+++|++|++++| .+++.++.
T Consensus 108 ~~L~~L~ls~~~~~~~~-~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~-~~~~~L~~L~l~~n-~l~~~~~~ 183 (319)
T cd00116 108 SSLQELKLNNNGLGDRG-LRLLAKGLKDLPPALEKLVLGRN-RLEGASCEALAKAL-RANRDLKELNLANN-GIGDAGIR 183 (319)
T ss_pred CcccEEEeeCCccchHH-HHHHHHHHHhCCCCceEEEcCCC-cCCchHHHHHHHHH-HhCCCcCEEECcCC-CCchHHHH
Confidence 66999999987654321 111 122455 89999999996 56756655555544 23478999999995 88887777
Q ss_pred HHHhh---CCCCCeEeccCCCCcCHHHHHHHH---HhCCCCcEEecCCCCCCCHHHHHHHHhcC----CCccEEecCCCC
Q 023841 134 IISST---CPELKVFSIYWNVRVTDIGIQHLV---KNCKHIIDLNLSGCKNLLDKSLQLIADNY----QELESLNLTRYV 203 (276)
Q Consensus 134 ~l~~~---~~~L~~L~L~~~~~l~~~~l~~l~---~~~~~L~~L~l~~c~~ltd~~~~~l~~~~----~~L~~L~l~~c~ 203 (276)
.+... +++|+.|++++| .+++.++..++ ..+++|++|++++| .+++.++..++..+ +.|++|++++|
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n- 260 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCN- 260 (319)
T ss_pred HHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCC-
Confidence 66544 459999999988 68777765543 46789999999997 78988888887754 79999999998
Q ss_pred CCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccC-CCCceeeeec
Q 023841 204 NMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTY-KHGKEKHIIE 267 (276)
Q Consensus 204 ~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~-~~L~~l~~~~ 267 (276)
.+++.+...+.. ....++.|+.++++.+.+++............. ++|+++++.+
T Consensus 261 ~i~~~~~~~l~~---------~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 261 DITDDGAKDLAE---------VLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred CCCcHHHHHHHH---------HHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence 899888777643 334447899999999998877221111111333 5788777754
No 9
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.02 E-value=9.9e-10 Score=91.72 Aligned_cols=203 Identities=15% Similarity=0.158 Sum_probs=127.7
Q ss_pred HhcCCCCccEEecCCccCc--chhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHc--------cCCCCCccEEec
Q 023841 52 LVSYPSLWLVIDLREMNNA--GNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKC--------LGSLQDLESLNL 121 (276)
Q Consensus 52 ~~~~~~~~~~l~l~~~~~~--~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~--------~~~~~~L~~L~l 121 (276)
+...| .++.++++.+... ....+..+. ++|..|++|.+.+| .+...+-..|+... ..+-++|+.+.+
T Consensus 88 L~~~~-~L~~ldLSDNA~G~~g~~~l~~ll-~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 88 LLGCP-KLQKLDLSDNAFGPKGIRGLEELL-SSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFIC 164 (382)
T ss_pred HhcCC-ceeEeeccccccCccchHHHHHHH-HhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence 34444 7888888876432 233444443 56888888888886 44444444433311 244577888888
Q ss_pred CCCCCCCHHHHH---HHHhhCCCCCeEeccCCCCcCHHHHHHH---HHhCCCCcEEecCCCCCCCHHHHHHHHh---cCC
Q 023841 122 NGCQKISDKGIE---IISSTCPELKVFSIYWNVRVTDIGIQHL---VKNCKHIIDLNLSGCKNLLDKSLQLIAD---NYQ 192 (276)
Q Consensus 122 ~~c~~l~~~~~~---~l~~~~~~L~~L~L~~~~~l~~~~l~~l---~~~~~~L~~L~l~~c~~ltd~~~~~l~~---~~~ 192 (276)
++ +.+.+.+.. ...+.+|.|+.+.++.+ .|..+++..+ ..+|++|+.|++..+ .+|.++-..++. ..|
T Consensus 165 ~r-Nrlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~ 241 (382)
T KOG1909|consen 165 GR-NRLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWP 241 (382)
T ss_pred ec-cccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccc
Confidence 87 566665543 44456778888888865 5666665433 247888888888885 666666555554 467
Q ss_pred CccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841 193 ELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 269 (276)
Q Consensus 193 ~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 269 (276)
+|+.|+++.| .+.+.|..++. .....+.+.|+.+.+.++.++-+.+.....-...-|.|.+|++..|-
T Consensus 242 ~L~El~l~dc-ll~~~Ga~a~~--------~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 242 HLRELNLGDC-LLENEGAIAFV--------DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred hheeeccccc-ccccccHHHHH--------HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 7888888888 77777766654 23344567777888877776655332222211336677777777654
No 10
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1e-10 Score=100.09 Aligned_cols=197 Identities=18% Similarity=0.102 Sum_probs=122.0
Q ss_pred HhcCCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHH
Q 023841 52 LVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKG 131 (276)
Q Consensus 52 ~~~~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~ 131 (276)
..+.+++.+.++++..-......+..++ .++|+|+.|+++.. .+.-..-..... .+++|+.|.++.| .++...
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~-eqLp~Le~LNls~N-rl~~~~~s~~~~----~l~~lK~L~l~~C-Gls~k~ 213 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIA-EQLPSLENLNLSSN-RLSNFISSNTTL----LLSHLKQLVLNSC-GLSWKD 213 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHH-Hhcccchhcccccc-cccCCccccchh----hhhhhheEEeccC-CCCHHH
Confidence 4556677777777776655666666665 67888888888752 221111111111 1377888888887 788888
Q ss_pred HHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHH
Q 023841 132 IEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLF 211 (276)
Q Consensus 132 ~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~ 211 (276)
+..+...||+|+.|+|.++..+.-..... +....|++|+|+++..++...+..+ .++|.|+.|+++.| .+++-.+.
T Consensus 214 V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~~~~~~~-~~l~~L~~Lnls~t-gi~si~~~ 289 (505)
T KOG3207|consen 214 VQWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDFDQGYKV-GTLPGLNQLNLSST-GIASIAEP 289 (505)
T ss_pred HHHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCccccccccccc-ccccchhhhhcccc-CcchhcCC
Confidence 88888888888888888764332221111 1245688888888755554433333 35888888888886 56554333
Q ss_pred HHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841 212 YIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 269 (276)
Q Consensus 212 ~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 269 (276)
.....+ ..+.+++|+.|.++.+.+.+-..+..+ ...+||+.|.+...|
T Consensus 290 d~~s~~-------kt~~f~kL~~L~i~~N~I~~w~sl~~l---~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 290 DVESLD-------KTHTFPKLEYLNISENNIRDWRSLNHL---RTLENLKHLRITLNY 337 (505)
T ss_pred Cccchh-------hhcccccceeeecccCccccccccchh---hccchhhhhhccccc
Confidence 211111 245678888999988887555334333 577788888766554
No 11
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.70 E-value=3.8e-08 Score=82.43 Aligned_cols=197 Identities=15% Similarity=0.202 Sum_probs=134.6
Q ss_pred CCccEEecCCccCc--chhh---HHHh--ccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCH
Q 023841 57 SLWLVIDLREMNNA--GNRL---VAAL--SIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISD 129 (276)
Q Consensus 57 ~~~~~l~l~~~~~~--~~~~---l~~l--~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~ 129 (276)
+.++..+++..... .+.. +..+ ++..||.|++|++++ +-+...+...+.... +++..|++|.+.+| .+..
T Consensus 58 ~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD-NA~G~~g~~~l~~ll-~s~~~L~eL~L~N~-Glg~ 134 (382)
T KOG1909|consen 58 KELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD-NAFGPKGIRGLEELL-SSCTDLEELYLNNC-GLGP 134 (382)
T ss_pred ccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc-cccCccchHHHHHHH-HhccCHHHHhhhcC-CCCh
Confidence 36777777765321 1211 1111 235788999999998 455555555444433 22589999999997 6676
Q ss_pred HHHHHHHh------------hCCCCCeEeccCCCCcCHHHHHHH---HHhCCCCcEEecCCCCCCCHHHHHHHH---hcC
Q 023841 130 KGIEIISS------------TCPELKVFSIYWNVRVTDIGIQHL---VKNCKHIIDLNLSGCKNLLDKSLQLIA---DNY 191 (276)
Q Consensus 130 ~~~~~l~~------------~~~~L~~L~L~~~~~l~~~~l~~l---~~~~~~L~~L~l~~c~~ltd~~~~~l~---~~~ 191 (276)
.+-..++. .-++|+.+....+ .+-+.+...+ .+.++.|+.+.+..+ .|..+++..++ .+|
T Consensus 135 ~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~ 212 (382)
T KOG1909|consen 135 EAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHC 212 (382)
T ss_pred hHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhC
Confidence 65444332 4567999988865 5555554444 466789999999984 77777775554 369
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEE--eeccCCCCceeeeecce
Q 023841 192 QELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYII--ETNTYKHGKEKHIIETI 269 (276)
Q Consensus 192 ~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~--~~~~~~~L~~l~~~~~~ 269 (276)
|+|+.||++.. -+|..|-.+++ ..+...+.|+.++++++.+.+. |...+. -....|+|+.+.+..++
T Consensus 213 ~~LevLdl~DN-tft~egs~~La---------kaL~s~~~L~El~l~dcll~~~-Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 213 PHLEVLDLRDN-TFTLEGSVALA---------KALSSWPHLRELNLGDCLLENE-GAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred Ccceeeecccc-hhhhHHHHHHH---------HHhcccchheeecccccccccc-cHHHHHHHHhccCCCCceeccCcch
Confidence 99999999996 67777766664 2667778999999999998887 543332 11458999999988765
No 12
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=7.2e-09 Score=89.02 Aligned_cols=113 Identities=22% Similarity=0.226 Sum_probs=75.3
Q ss_pred ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCc--CHHHH
Q 023841 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRV--TDIGI 158 (276)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l--~~~~l 158 (276)
+++..|+.+.+.++ .+.+.+.+..+..| ++++.|++++.---....+..+++.+|+|+.|+|+.+.-. ++...
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~----~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~ 192 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEYSKIL----PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT 192 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhhhhhC----CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc
Confidence 56677788887774 56666655555544 8888888887323344567777777888888888754211 11111
Q ss_pred HHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCC
Q 023841 159 QHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY 202 (276)
Q Consensus 159 ~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c 202 (276)
. ..+++|+.|.++.| .+++..+..+...+|+|+.|.+.+.
T Consensus 193 ~---~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 193 T---LLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred h---hhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 1 14567888888887 7778888887777888888888775
No 13
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.58 E-value=4.7e-08 Score=91.48 Aligned_cols=146 Identities=18% Similarity=0.145 Sum_probs=75.5
Q ss_pred CccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHh
Q 023841 58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS 137 (276)
Q Consensus 58 ~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 137 (276)
+++.+++++.........+... ..+|+|++|.+.+- .+....+..+... +|+|..||+|++ ++++- ..+ .
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig-~~LPsL~sL~i~~~-~~~~~dF~~lc~s----FpNL~sLDIS~T-nI~nl--~GI-S 192 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIG-TMLPSLRSLVISGR-QFDNDDFSQLCAS----FPNLRSLDISGT-NISNL--SGI-S 192 (699)
T ss_pred hhhhcCccccchhhccHHHHHh-hhCcccceEEecCc-eecchhHHHHhhc----cCccceeecCCC-CccCc--HHH-h
Confidence 4455555554443333333343 45666666666663 3333333344333 366666666664 44442 222 2
Q ss_pred hCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHH-HHHHHHh---cCCCccEEecCCCCCCCHHHHHHH
Q 023841 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDK-SLQLIAD---NYQELESLNLTRYVNMILLGLFYI 213 (276)
Q Consensus 138 ~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~-~~~~l~~---~~~~L~~L~l~~c~~it~~~l~~l 213 (276)
.+++|+.|.+.+...-+.+.+..+. ++++|+.||+|.-....+. -+....+ .+|.|+.||.++. .++++.+..+
T Consensus 193 ~LknLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT-di~~~~le~l 270 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT-DINEEILEEL 270 (699)
T ss_pred ccccHHHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc-chhHHHHHHH
Confidence 3666666666655444434455555 5667777777764333333 1222221 2567777777763 6666666665
Q ss_pred Hh
Q 023841 214 WS 215 (276)
Q Consensus 214 ~~ 215 (276)
..
T Consensus 271 l~ 272 (699)
T KOG3665|consen 271 LN 272 (699)
T ss_pred HH
Confidence 54
No 14
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.57 E-value=3.9e-07 Score=85.41 Aligned_cols=165 Identities=10% Similarity=0.145 Sum_probs=122.1
Q ss_pred cCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHH
Q 023841 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 161 (276)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l 161 (276)
.-.+|++|++++...++......++.-+ |.|++|.+++ ..+..+.+..++..+|+|..||++++ ++++- ..+
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~L----PsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl--~GI 191 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTML----PSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGT-NISNL--SGI 191 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhC----cccceEEecC-ceecchhHHHHhhccCccceeecCCC-CccCc--HHH
Confidence 3468999999997777776777777765 9999999999 47777778899999999999999986 67653 333
Q ss_pred HHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccC
Q 023841 162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSN 241 (276)
Q Consensus 162 ~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~ 241 (276)
+ .+++|+.|.+.+-..-+...+..++. +++|+.||+|.-...++.-+...- -.....+|+|+.++.+...
T Consensus 192 S-~LknLq~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qY--------lec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 192 S-RLKNLQVLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQY--------LECGMVLPELRFLDCSGTD 261 (699)
T ss_pred h-ccccHHHHhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHH--------HHhcccCccccEEecCCcc
Confidence 3 78899999998865555677888875 999999999996444433111110 1134557899999998888
Q ss_pred CCCCcceeEEEeeccCCCCceeeeec
Q 023841 242 GGDHLAFAYIIETNTYKHGKEKHIIE 267 (276)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~L~~l~~~~ 267 (276)
+... .+..+. ...|+|+.+.+-.
T Consensus 262 i~~~-~le~ll--~sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 262 INEE-ILEELL--NSHPNLQQIAALD 284 (699)
T ss_pred hhHH-HHHHHH--HhCccHhhhhhhh
Confidence 7766 566666 6777777776543
No 15
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.53 E-value=7.5e-08 Score=58.02 Aligned_cols=46 Identities=26% Similarity=0.333 Sum_probs=34.9
Q ss_pred CCCCCcHHHHHHHhcCCCHhhhHHHhccCHHHHHHHhcCCCCccEEec
Q 023841 17 WSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDL 64 (276)
Q Consensus 17 ~~~~~~p~il~~if~~L~~~~l~~~~~v~~~~~~~~~~~~~~~~~l~l 64 (276)
|..+| +|++.+||+||+..|+.++++||+.|++. +.+...|+.+.+
T Consensus 1 i~~LP-~Eil~~If~~L~~~dl~~~~~vcr~w~~~-~~~~~lW~~~~~ 46 (47)
T PF12937_consen 1 ISSLP-DEILLEIFSYLDPRDLLRLSLVCRRWRRI-ANDNSLWRRLCL 46 (47)
T ss_dssp CCCS--HHHHHHHHTTS-HHHHHHHTTSSHHHHHH-HTCCCHHHHHC-
T ss_pred ChHhH-HHHHHHHHhcCCHHHHHHHHHHHHHHHHH-HCChhhhhhhcc
Confidence 45555 68999999999999999999999997765 444488876543
No 16
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.49 E-value=2.9e-07 Score=90.80 Aligned_cols=38 Identities=3% Similarity=0.122 Sum_probs=18.9
Q ss_pred CCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841 228 GIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 269 (276)
Q Consensus 228 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 269 (276)
++++|+.++++.+.+.... ...+ ..+++|+.|++..+.
T Consensus 282 ~l~~L~~L~Ls~n~l~~~~--p~~~--~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 282 SLQKLISLDLSDNSLSGEI--PELV--IQLQNLEILHLFSNN 319 (968)
T ss_pred hccCcCEEECcCCeeccCC--ChhH--cCCCCCcEEECCCCc
Confidence 4455555555544433221 1112 356677777776554
No 17
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=2e-07 Score=72.56 Aligned_cols=88 Identities=22% Similarity=0.326 Sum_probs=62.2
Q ss_pred CccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCc
Q 023841 115 DLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQEL 194 (276)
Q Consensus 115 ~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L 194 (276)
.++.++-+++ .|..+|+..+.. ++.++.|.+.+|..+.|.++..++.-.++|+.|++++|..||+.|+..+.+ +++|
T Consensus 102 ~IeaVDAsds-~I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDS-SIMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNL 178 (221)
T ss_pred eEEEEecCCc-hHHHHHHHHHhc-cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhh
Confidence 3556666663 666777777655 777777777777777777777777666777777777777777777777764 7777
Q ss_pred cEEecCCCCCC
Q 023841 195 ESLNLTRYVNM 205 (276)
Q Consensus 195 ~~L~l~~c~~i 205 (276)
+.|.|.+=+.+
T Consensus 179 r~L~l~~l~~v 189 (221)
T KOG3864|consen 179 RRLHLYDLPYV 189 (221)
T ss_pred HHHHhcCchhh
Confidence 77777764333
No 18
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.42 E-value=4.7e-07 Score=89.27 Aligned_cols=108 Identities=15% Similarity=0.100 Sum_probs=47.6
Q ss_pred CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841 56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135 (276)
Q Consensus 56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 135 (276)
.+.++.++++.+....... .. +..+++|++|+++++. ++...-..+. .+++|++|++++| .++......+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p-~~--~~~l~~L~~L~L~~n~-l~~~~p~~~~-----~l~~L~~L~L~~n-~l~~~~p~~l 208 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIP-ND--IGSFSSLKVLDLGGNV-LVGKIPNSLT-----NLTSLEFLTLASN-QLVGQIPREL 208 (968)
T ss_pred cCCCCEEECcCCcccccCC-hH--HhcCCCCCEEECccCc-ccccCChhhh-----hCcCCCeeeccCC-CCcCcCChHH
Confidence 4567778877765432111 11 2456777777777642 2211111121 1356666666654 3322111112
Q ss_pred HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCC
Q 023841 136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGC 176 (276)
Q Consensus 136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c 176 (276)
..+++|+.|+++++ .++...-..+. .+++|++|++++|
T Consensus 209 -~~l~~L~~L~L~~n-~l~~~~p~~l~-~l~~L~~L~L~~n 246 (968)
T PLN00113 209 -GQMKSLKWIYLGYN-NLSGEIPYEIG-GLTSLNHLDLVYN 246 (968)
T ss_pred -cCcCCccEEECcCC-ccCCcCChhHh-cCCCCCEEECcCc
Confidence 12455555555544 22221111222 4445555555543
No 19
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=5.2e-07 Score=70.30 Aligned_cols=88 Identities=24% Similarity=0.353 Sum_probs=76.4
Q ss_pred ccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhC
Q 023841 86 VREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNC 165 (276)
Q Consensus 86 L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~ 165 (276)
++.++-++ ..|...+++.+.. ++.++.|.+.+|..+.|.++..+....++|+.|++++|+.||+.++..+. .+
T Consensus 103 IeaVDAsd-s~I~~eGle~L~~-----l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~l 175 (221)
T KOG3864|consen 103 IEAVDASD-SSIMYEGLEHLRD-----LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KL 175 (221)
T ss_pred EEEEecCC-chHHHHHHHHHhc-----cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-Hh
Confidence 56667666 4788888888865 58999999999999999999999999999999999999999999999887 78
Q ss_pred CCCcEEecCCCCCCC
Q 023841 166 KHIIDLNLSGCKNLL 180 (276)
Q Consensus 166 ~~L~~L~l~~c~~lt 180 (276)
++|+.|.+++-..+.
T Consensus 176 knLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 176 KNLRRLHLYDLPYVA 190 (221)
T ss_pred hhhHHHHhcCchhhh
Confidence 999999998865554
No 20
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.09 E-value=3.1e-07 Score=71.41 Aligned_cols=136 Identities=24% Similarity=0.309 Sum_probs=48.4
Q ss_pred ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (276)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~ 160 (276)
.++..+++|++.++ .++. ++.+... +.+|+.|+++++ .++. +..+. .++.|++|+++++ .+++-+ ..
T Consensus 16 ~n~~~~~~L~L~~n-~I~~--Ie~L~~~----l~~L~~L~Ls~N-~I~~--l~~l~-~L~~L~~L~L~~N-~I~~i~-~~ 82 (175)
T PF14580_consen 16 NNPVKLRELNLRGN-QIST--IENLGAT----LDKLEVLDLSNN-QITK--LEGLP-GLPRLKTLDLSNN-RISSIS-EG 82 (175)
T ss_dssp -----------------------S--TT-----TT--EEE-TTS---S----TT-----TT--EEE--SS----S-C-HH
T ss_pred cccccccccccccc-cccc--ccchhhh----hcCCCEEECCCC-CCcc--ccCcc-ChhhhhhcccCCC-CCCccc-cc
Confidence 34557888999884 4432 2333322 378999999985 5554 33332 3788999999876 555421 23
Q ss_pred HHHhCCCCcEEecCCCCCCCH-HHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccc
Q 023841 161 LVKNCKHIIDLNLSGCKNLLD-KSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINS 239 (276)
Q Consensus 161 l~~~~~~L~~L~l~~c~~ltd-~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~ 239 (276)
+...+|+|++|.++++ .|.+ ..+..+. .+|+|+.|++.+++ +++.. .-+......+|.|+.|+-..
T Consensus 83 l~~~lp~L~~L~L~~N-~I~~l~~l~~L~-~l~~L~~L~L~~NP-v~~~~----------~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNN-KISDLNELEPLS-SLPKLRVLSLEGNP-VCEKK----------NYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp HHHH-TT--EEE-TTS----SCCCCGGGG-G-TT--EEE-TT-G-GGGST----------THHHHHHHH-TT-SEETTEE
T ss_pred hHHhCCcCCEEECcCC-cCCChHHhHHHH-cCCCcceeeccCCc-ccchh----------hHHHHHHHHcChhheeCCEE
Confidence 4456899999999885 5543 2344443 58999999999874 44321 11244566777788777644
Q ss_pred cCC
Q 023841 240 SNG 242 (276)
Q Consensus 240 ~~~ 242 (276)
...
T Consensus 150 V~~ 152 (175)
T PF14580_consen 150 VTE 152 (175)
T ss_dssp TTS
T ss_pred ccH
Confidence 443
No 21
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.04 E-value=1.3e-06 Score=78.20 Aligned_cols=12 Identities=25% Similarity=0.410 Sum_probs=6.6
Q ss_pred hCCCCcEEecCC
Q 023841 164 NCKHIIDLNLSG 175 (276)
Q Consensus 164 ~~~~L~~L~l~~ 175 (276)
.|++|++|++++
T Consensus 315 ftqkL~~LdLs~ 326 (873)
T KOG4194|consen 315 FTQKLKELDLSS 326 (873)
T ss_pred hcccceeEeccc
Confidence 455555555555
No 22
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.04 E-value=1.2e-05 Score=80.55 Aligned_cols=86 Identities=21% Similarity=0.293 Sum_probs=40.2
Q ss_pred ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (276)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~ 160 (276)
..+++|+.|+++++..+.... .+ ..+++|+.|++++|..+..- -.-...+++|+.|++++|..++.-..
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip--~l-----s~l~~Le~L~L~~c~~L~~l--p~si~~L~~L~~L~L~~c~~L~~Lp~-- 699 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIP--DL-----SMATNLETLKLSDCSSLVEL--PSSIQYLNKLEDLDMSRCENLEILPT-- 699 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCC--cc-----ccCCcccEEEecCCCCcccc--chhhhccCCCCEEeCCCCCCcCccCC--
Confidence 345666666666543321110 01 12366666666666443221 11122356666666666644322100
Q ss_pred HHHhCCCCcEEecCCCCC
Q 023841 161 LVKNCKHIIDLNLSGCKN 178 (276)
Q Consensus 161 l~~~~~~L~~L~l~~c~~ 178 (276)
..++++|+.|++++|..
T Consensus 700 -~i~l~sL~~L~Lsgc~~ 716 (1153)
T PLN03210 700 -GINLKSLYRLNLSGCSR 716 (1153)
T ss_pred -cCCCCCCCEEeCCCCCC
Confidence 01355666666666643
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.98 E-value=2.8e-06 Score=66.14 Aligned_cols=128 Identities=20% Similarity=0.272 Sum_probs=50.4
Q ss_pred CccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHh
Q 023841 58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS 137 (276)
Q Consensus 58 ~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 137 (276)
..+++++.+...... ..+. ..+.+|+.|+++++ .++. +..+. .+++|+.|++++ +.++.-+ ..+..
T Consensus 20 ~~~~L~L~~n~I~~I---e~L~-~~l~~L~~L~Ls~N-~I~~--l~~l~-----~L~~L~~L~L~~-N~I~~i~-~~l~~ 85 (175)
T PF14580_consen 20 KLRELNLRGNQISTI---ENLG-ATLDKLEVLDLSNN-QITK--LEGLP-----GLPRLKTLDLSN-NRISSIS-EGLDK 85 (175)
T ss_dssp -------------------S---TT-TT--EEE-TTS---S----TT---------TT--EEE--S-S---S-C-HHHHH
T ss_pred ccccccccccccccc---cchh-hhhcCCCEEECCCC-CCcc--ccCcc-----ChhhhhhcccCC-CCCCccc-cchHH
Confidence 456677777654332 2222 35689999999985 4432 22222 248999999999 6877632 23445
Q ss_pred hCCCCCeEeccCCCCcCH-HHHHHHHHhCCCCcEEecCCCCCCCH-HHH-HHHHhcCCCccEEecCCC
Q 023841 138 TCPELKVFSIYWNVRVTD-IGIQHLVKNCKHIIDLNLSGCKNLLD-KSL-QLIADNYQELESLNLTRY 202 (276)
Q Consensus 138 ~~~~L~~L~L~~~~~l~~-~~l~~l~~~~~~L~~L~l~~c~~ltd-~~~-~~l~~~~~~L~~L~l~~c 202 (276)
.+|+|++|+++++ .+.+ ..+..+. .+|+|+.|++.++ .+++ ... ..+...+|+|+.||-...
T Consensus 86 ~lp~L~~L~L~~N-~I~~l~~l~~L~-~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 86 NLPNLQELYLSNN-KISDLNELEPLS-SLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp H-TT--EEE-TTS----SCCCCGGGG-G-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred hCCcCCEEECcCC-cCCChHHhHHHH-cCCCcceeeccCC-cccchhhHHHHHHHHcChhheeCCEEc
Confidence 6999999999976 4544 3344554 7999999999996 4442 222 234556999999996553
No 24
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.83 E-value=2.3e-05 Score=40.59 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=15.6
Q ss_pred CCCccEEecCCCCCCCHHHHHHHH
Q 023841 191 YQELESLNLTRYVNMILLGLFYIW 214 (276)
Q Consensus 191 ~~~L~~L~l~~c~~it~~~l~~l~ 214 (276)
||+|+.|+|++|.++||.|+..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 466666666666666666666654
No 25
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.82 E-value=6.3e-06 Score=73.92 Aligned_cols=58 Identities=24% Similarity=0.346 Sum_probs=28.5
Q ss_pred CCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCC
Q 023841 141 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY 202 (276)
Q Consensus 141 ~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c 202 (276)
++++|+|+++ .||+-+...+. ++.+|..|.++.+ .+|.-.... ++++|+|+.|+|...
T Consensus 174 ni~~L~La~N-~It~l~~~~F~-~lnsL~tlkLsrN-rittLp~r~-Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 174 NIKKLNLASN-RITTLETGHFD-SLNSLLTLKLSRN-RITTLPQRS-FKRLPKLESLDLNRN 231 (873)
T ss_pred CceEEeeccc-ccccccccccc-ccchheeeecccC-cccccCHHH-hhhcchhhhhhcccc
Confidence 4555555543 45544444433 3445555555553 443322222 223666777766663
No 26
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.66 E-value=4.4e-05 Score=76.57 Aligned_cols=84 Identities=19% Similarity=0.280 Sum_probs=36.9
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCC
Q 023841 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ 192 (276)
Q Consensus 113 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~ 192 (276)
+++|+.|++++|..+..-. .. ..+++|+.|++++|..+.. +....++|+.|+++++ .++. +..-...++
T Consensus 801 L~~L~~L~Ls~C~~L~~LP--~~-~~L~sL~~L~Ls~c~~L~~-----~p~~~~nL~~L~Ls~n-~i~~--iP~si~~l~ 869 (1153)
T PLN03210 801 LHKLEHLEIENCINLETLP--TG-INLESLESLDLSGCSRLRT-----FPDISTNISDLNLSRT-GIEE--VPWWIEKFS 869 (1153)
T ss_pred CCCCCEEECCCCCCcCeeC--CC-CCccccCEEECCCCCcccc-----ccccccccCEeECCCC-CCcc--ChHHHhcCC
Confidence 3555555555554332210 00 0245555555555543321 1112234555555553 3321 111112466
Q ss_pred CccEEecCCCCCCCH
Q 023841 193 ELESLNLTRYVNMIL 207 (276)
Q Consensus 193 ~L~~L~l~~c~~it~ 207 (276)
+|+.|++++|.+++.
T Consensus 870 ~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 870 NLSFLDMNGCNNLQR 884 (1153)
T ss_pred CCCEEECCCCCCcCc
Confidence 677777777665543
No 27
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=9.9e-06 Score=67.02 Aligned_cols=198 Identities=15% Similarity=0.122 Sum_probs=120.1
Q ss_pred cCCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHH
Q 023841 54 SYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIE 133 (276)
Q Consensus 54 ~~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 133 (276)
..+...+++++......++..+.++. .+.|.|+.|+++. +.+... ...+ +.+..+|+.|-+.+ +.++.....
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~il-e~lP~l~~LNls~-N~L~s~-I~~l----p~p~~nl~~lVLNg-T~L~w~~~~ 139 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAIL-EQLPALTTLNLSC-NSLSSD-IKSL----PLPLKNLRVLVLNG-TGLSWTQST 139 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHH-hcCccceEeeccC-CcCCCc-cccC----cccccceEEEEEcC-CCCChhhhh
Confidence 33445666777776655555555555 7788888888875 333221 1111 23457888888888 588888888
Q ss_pred HHHhhCCCCCeEeccCC----CCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHH-
Q 023841 134 IISSTCPELKVFSIYWN----VRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILL- 208 (276)
Q Consensus 134 ~l~~~~~~L~~L~L~~~----~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~- 208 (276)
......|.+++|+++.+ -+++|+..+.+. +.++.|+...|...-+..+..+.+.+|++..+.+..|+--|..
T Consensus 140 s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s---~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ 216 (418)
T KOG2982|consen 140 SSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWS---TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESS 216 (418)
T ss_pred hhhhcchhhhhhhhccchhhhhccccccccccc---hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhh
Confidence 88888888888877754 134444444432 4567777777766667777777888899999988888422221
Q ss_pred --H--------HHHHHhcCchhhHHH-HHcCCCccceecccccCCCCCcc----eeEEEeeccCCCCceee
Q 023841 209 --G--------LFYIWSNNILLMSEF-IYHGIRFFQAVQINSSNGGDHLA----FAYIIETNTYKHGKEKH 264 (276)
Q Consensus 209 --~--------l~~l~~~~~~~l~~~-~~~~~~~L~~l~l~~~~~~~~~~----~~~~~~~~~~~~L~~l~ 264 (276)
+ +.-++..+......+ .+.+++.|..+++...++.|... ...++ +.+++++-|+
T Consensus 217 ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llI--aRL~~v~vLN 285 (418)
T KOG2982|consen 217 EKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLI--ARLTKVQVLN 285 (418)
T ss_pred cccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEE--eeccceEEec
Confidence 1 111121222211111 35678888888887777666521 12333 5566666554
No 28
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.61 E-value=7.8e-05 Score=38.53 Aligned_cols=22 Identities=41% Similarity=0.821 Sum_probs=8.8
Q ss_pred CCCcEEecCCCCCCCHHHHHHH
Q 023841 166 KHIIDLNLSGCKNLLDKSLQLI 187 (276)
Q Consensus 166 ~~L~~L~l~~c~~ltd~~~~~l 187 (276)
++|++|++++|..|||.++..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 3344444444444444444333
No 29
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.55 E-value=0.0021 Score=52.96 Aligned_cols=177 Identities=12% Similarity=0.076 Sum_probs=97.3
Q ss_pred CCCCccEEecCCccCc--chhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHc--------cCCCCCccEEecCCC
Q 023841 55 YPSLWLVIDLREMNNA--GNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKC--------LGSLQDLESLNLNGC 124 (276)
Q Consensus 55 ~~~~~~~l~l~~~~~~--~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~--------~~~~~~L~~L~l~~c 124 (276)
.|+.++.++++..... ....+..+ +++...|++|.+++|. +...+-..|.... ..+-|.|+.+.+..
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~-is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr- 166 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDL-ISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR- 166 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHH-HhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEecc-
Confidence 3556666666654322 11222222 2455666666666643 2222222222111 23346666666655
Q ss_pred CCCCHHH---HHHHHhhCCCCCeEeccCCCCcCHHHHHHHH----HhCCCCcEEecCCCCCCCHHHHHHHHh---cCCCc
Q 023841 125 QKISDKG---IEIISSTCPELKVFSIYWNVRVTDIGIQHLV----KNCKHIIDLNLSGCKNLLDKSLQLIAD---NYQEL 194 (276)
Q Consensus 125 ~~l~~~~---~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~----~~~~~L~~L~l~~c~~ltd~~~~~l~~---~~~~L 194 (276)
+++.... .....+.-.+|+++.+..+ .|..+++..++ .+|++|+.|++..+ .+|-.+-..++. ..+.|
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~l 244 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchh
Confidence 3333322 2222232346777777764 67777665553 46888999999885 666555555544 35668
Q ss_pred cEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCC
Q 023841 195 ESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGD 244 (276)
Q Consensus 195 ~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~ 244 (276)
+.|++..| .++.+|...+.+ .+.-.-.++|..|..+|+....
T Consensus 245 rEL~lnDC-lls~~G~~~v~~-------~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 245 RELRLNDC-LLSNEGVKSVLR-------RFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred hhccccch-hhccccHHHHHH-------HhhhhcCCCccccccchhhhcC
Confidence 88999998 677777666543 2233445667777777776543
No 30
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.44 E-value=0.0001 Score=44.35 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=26.8
Q ss_pred CCCCCcHHHHHHHhcCCCHhhhHHHhccCHHHHHH
Q 023841 17 WSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRT 51 (276)
Q Consensus 17 ~~~~~~p~il~~if~~L~~~~l~~~~~v~~~~~~~ 51 (276)
|.++| +|++.+||++|+..++..+++||+.|++.
T Consensus 3 ~~~LP-~~il~~Il~~l~~~~~~~l~~vsk~~~~~ 36 (48)
T PF00646_consen 3 LSDLP-DEILQEILSYLDPKDLLRLSLVSKRWRSL 36 (48)
T ss_dssp HHHS--HHHHHHHHHTS-HHHHHHHCTT-HHHHHH
T ss_pred HHHCC-HHHHHHHHHHCcHHHHHHHHHHhhHHHHH
Confidence 45555 58999999999999999999999997764
No 31
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.43 E-value=0.00073 Score=55.57 Aligned_cols=15 Identities=7% Similarity=0.147 Sum_probs=9.1
Q ss_pred ccCCCCceeeeecce
Q 023841 255 NTYKHGKEKHIIETI 269 (276)
Q Consensus 255 ~~~~~L~~l~~~~~~ 269 (276)
...|+|++|++.+|.
T Consensus 239 ~~W~~lrEL~lnDCl 253 (388)
T COG5238 239 CEWNLLRELRLNDCL 253 (388)
T ss_pred cccchhhhccccchh
Confidence 345566666666664
No 32
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.33 E-value=0.00019 Score=41.37 Aligned_cols=37 Identities=19% Similarity=0.465 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCCHhhhHHHhccCHHHHHHHhcCCCCcc
Q 023841 23 PKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWL 60 (276)
Q Consensus 23 p~il~~if~~L~~~~l~~~~~v~~~~~~~~~~~~~~~~ 60 (276)
+|++..||.+|+..|+.++..||+.|+. +...+..|.
T Consensus 3 ~~ll~~I~~~l~~~d~~~~~~vc~~~~~-~~~~~~~~~ 39 (41)
T smart00256 3 DEILEEILSKLPPKDLLRLRKVSRRWRS-LIDSHDFWF 39 (41)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhcChhhhh
Confidence 4799999999999999999999999665 455555553
No 33
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.89 E-value=0.00049 Score=62.18 Aligned_cols=128 Identities=18% Similarity=0.278 Sum_probs=65.9
Q ss_pred ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhh---CCCCCeEeccCCCCcCHHH
Q 023841 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST---CPELKVFSIYWNVRVTDIG 157 (276)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~---~~~L~~L~L~~~~~l~~~~ 157 (276)
...+.|..|++++ +++.+.+...+......+-+.++.|.+..| .++.++...++.. ++.++.++++.| .+...+
T Consensus 112 ~t~~~L~~L~l~~-n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~~~L~~~~~l~~l~l~~n-~l~~~g 188 (478)
T KOG4308|consen 112 KTLPTLGQLDLSG-NNLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLAAVLEKNEHLTELDLSLN-GLIELG 188 (478)
T ss_pred cccccHhHhhccc-CCCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHHHHHhcccchhHHHHHhc-ccchhh
Confidence 5667777788877 466677777777766443345666667665 5555554443332 445555666554 232333
Q ss_pred HHHHHHh-------CCCCcEEecCCCCCCCHHHHHHHHhc---CCC-ccEEecCCCCCCCHHHHHHH
Q 023841 158 IQHLVKN-------CKHIIDLNLSGCKNLLDKSLQLIADN---YQE-LESLNLTRYVNMILLGLFYI 213 (276)
Q Consensus 158 l~~l~~~-------~~~L~~L~l~~c~~ltd~~~~~l~~~---~~~-L~~L~l~~c~~it~~~l~~l 213 (276)
...+.+. -.++++|++++| .+++.....+... .++ +..|++..+ .+.|.++..+
T Consensus 189 ~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~n-~l~d~g~~~L 253 (478)
T KOG4308|consen 189 LLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLASN-KLGDVGVEKL 253 (478)
T ss_pred hHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHhc-CcchHHHHHH
Confidence 3333222 224566666665 4444444433322 222 333444443 4444444443
No 34
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.87 E-value=0.00011 Score=69.45 Aligned_cols=107 Identities=19% Similarity=0.255 Sum_probs=56.4
Q ss_pred CccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHH--
Q 023841 85 HVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV-- 162 (276)
Q Consensus 85 ~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~-- 162 (276)
.|+.|.+.+ +.++|..+..+.. +++|+-|++++ +.++...-..+. +++.|++|+|+|+ .++.-. ..++
T Consensus 360 ~Lq~Lylan-N~Ltd~c~p~l~~-----~~hLKVLhLsy-NrL~~fpas~~~-kle~LeeL~LSGN-kL~~Lp-~tva~~ 429 (1081)
T KOG0618|consen 360 ALQELYLAN-NHLTDSCFPVLVN-----FKHLKVLHLSY-NRLNSFPASKLR-KLEELEELNLSGN-KLTTLP-DTVANL 429 (1081)
T ss_pred HHHHHHHhc-Ccccccchhhhcc-----ccceeeeeecc-cccccCCHHHHh-chHHhHHHhcccc-hhhhhh-HHHHhh
Confidence 455555555 4666666665543 47777777777 444432222222 2666777777765 332211 1111
Q ss_pred -------------------HhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCC
Q 023841 163 -------------------KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYV 203 (276)
Q Consensus 163 -------------------~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~ 203 (276)
..+++|+.+|++.+ .++.-.+..... -|+|++||++|..
T Consensus 430 ~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N-~L~~~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 430 GRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCN-NLSEVTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred hhhHHHhhcCCceeechhhhhcCcceEEecccc-hhhhhhhhhhCC-CcccceeeccCCc
Confidence 13456777777653 554444333221 1567777777754
No 35
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.80 E-value=0.00017 Score=65.07 Aligned_cols=122 Identities=22% Similarity=0.338 Sum_probs=80.4
Q ss_pred ccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCC----CCeEeccCCCCcCHHHHHHH
Q 023841 86 VREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPE----LKVFSIYWNVRVTDIGIQHL 161 (276)
Q Consensus 86 L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~----L~~L~L~~~~~l~~~~l~~l 161 (276)
+.+|.+.+| .+.+.+.+.++... ...+.|..|++++ +++.+++...+....+. |+.|++..| .+++.+...+
T Consensus 89 l~~L~L~~~-~l~~~~~~~l~~~l-~t~~~L~~L~l~~-n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l 164 (478)
T KOG4308|consen 89 LLHLSLANN-RLGDRGAEELAQAL-KTLPTLGQLDLSG-NNLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPL 164 (478)
T ss_pred HHHhhhhhC-ccccchHHHHHHHh-cccccHhHhhccc-CCCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHH
Confidence 677777774 67777777777766 3457788888888 47778888777776554 456677766 6777666555
Q ss_pred HHh---CCCCcEEecCCCCCCCHHHHHHHHhc-------CCCccEEecCCCCCCCHHHHHHH
Q 023841 162 VKN---CKHIIDLNLSGCKNLLDKSLQLIADN-------YQELESLNLTRYVNMILLGLFYI 213 (276)
Q Consensus 162 ~~~---~~~L~~L~l~~c~~ltd~~~~~l~~~-------~~~L~~L~l~~c~~it~~~l~~l 213 (276)
+.. +..++.++++.| .+.+.+...+.+. ..++++|++.+| .+|+.....+
T Consensus 165 ~~~L~~~~~l~~l~l~~n-~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l 224 (478)
T KOG4308|consen 165 AAVLEKNEHLTELDLSLN-GLIELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALL 224 (478)
T ss_pred HHHHhcccchhHHHHHhc-ccchhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHH
Confidence 433 456777777776 3445555555443 234788888887 6776555443
No 36
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.78 E-value=0.0011 Score=62.85 Aligned_cols=116 Identities=21% Similarity=0.381 Sum_probs=71.8
Q ss_pred ccCCCccEEeccCC--CCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHH--HHHHHh------------------h
Q 023841 81 PRYRHVREINLEFA--QDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKG--IEIISS------------------T 138 (276)
Q Consensus 81 ~~~~~L~~L~l~~~--~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~l~~------------------~ 138 (276)
...++||.|++++. +.+++..+..+ +.|++|.+|| ++++.-. +..... .
T Consensus 380 ~~~~hLKVLhLsyNrL~~fpas~~~kl--------e~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~ 450 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNRLNSFPASKLRKL--------EELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQ 450 (1081)
T ss_pred ccccceeeeeecccccccCCHHHHhch--------HHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCceeechhhhh
Confidence 56789999999985 34666555544 6799999998 5555422 111110 3
Q ss_pred CCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCC-HHHHHHHHhcCCCccEEecCCCCCCCHHHHH
Q 023841 139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLL-DKSLQLIADNYQELESLNLTRYVNMILLGLF 211 (276)
Q Consensus 139 ~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~lt-d~~~~~l~~~~~~L~~L~l~~c~~it~~~l~ 211 (276)
.++|+.+|++ |.+++...+...... |+|++|+++|+.++. |...- ..+.++...++.-. +.+|....
T Consensus 451 l~qL~~lDlS-~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l---~~l~~l~~~~i~~~-~~~d~~~n 518 (1081)
T KOG0618|consen 451 LPQLKVLDLS-CNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTL---KVLKSLSQMDITLN-NTPDGNVN 518 (1081)
T ss_pred cCcceEEecc-cchhhhhhhhhhCCC-cccceeeccCCcccccchhhh---HHhhhhhheecccC-CCCccccc
Confidence 5778999999 557876666554422 799999999986432 22221 12445555555542 45555444
No 37
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.0013 Score=54.77 Aligned_cols=102 Identities=23% Similarity=0.249 Sum_probs=51.5
Q ss_pred EEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCH-HHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCC
Q 023841 88 EINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISD-KGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCK 166 (276)
Q Consensus 88 ~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~ 166 (276)
-|.+.+|.--+...+..+.+.| ..++++++.+ +.+++ ..+.++...+|.|+.|+++.+ .++.. +..++....
T Consensus 49 llvln~~~id~~gd~~~~~~~~----~~v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~-I~~lp~p~~ 121 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSV----TDVKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCN-SLSSD-IKSLPLPLK 121 (418)
T ss_pred hheecCCCCCcchhHHHHHHHh----hhhhhhhccc-chhccHHHHHHHHhcCccceEeeccCC-cCCCc-cccCccccc
Confidence 3444444333344455555555 6666666666 45444 345566666666666666632 33221 223322344
Q ss_pred CCcEEecCCCCCCCHHHHHHHHhcCCCccEE
Q 023841 167 HIIDLNLSGCKNLLDKSLQLIADNYQELESL 197 (276)
Q Consensus 167 ~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L 197 (276)
+|+.|.+.+ ..+.+..........|.++.|
T Consensus 122 nl~~lVLNg-T~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 122 NLRVLVLNG-TGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred ceEEEEEcC-CCCChhhhhhhhhcchhhhhh
Confidence 666666666 355555544444444444444
No 38
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.48 E-value=0.0028 Score=31.87 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=12.9
Q ss_pred CCCccEEecCCCCCCCHHHHHHHH
Q 023841 191 YQELESLNLTRYVNMILLGLFYIW 214 (276)
Q Consensus 191 ~~~L~~L~l~~c~~it~~~l~~l~ 214 (276)
|++|++|+|++| .++++++..++
T Consensus 1 ~~~L~~L~l~~n-~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNN-QITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSS-BEHHHHHHHHH
T ss_pred CCCCCEEEccCC-cCCHHHHHHhC
Confidence 356666777666 46666666654
No 39
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.41 E-value=0.00085 Score=54.67 Aligned_cols=86 Identities=23% Similarity=0.357 Sum_probs=55.9
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCH-HHHHHHHHhCCCCcEEecCCCCC--CCHHHHHHHHh
Q 023841 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTD-IGIQHLVKNCKHIIDLNLSGCKN--LLDKSLQLIAD 189 (276)
Q Consensus 113 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~-~~l~~l~~~~~~L~~L~l~~c~~--ltd~~~~~l~~ 189 (276)
+++|++|.++....-...++..++..||+|++|.++++ .+.+ ..+..+. .+++|..|+++.|.. ++|.. ..++.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~-~l~nL~~Ldl~n~~~~~l~dyr-e~vf~ 140 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLK-ELENLKSLDLFNCSVTNLDDYR-EKVFL 140 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhh-hhcchhhhhcccCCccccccHH-HHHHH
Confidence 47888888887433445567778888899999999886 4543 3333333 677899999998843 22222 22333
Q ss_pred cCCCccEEecCC
Q 023841 190 NYQELESLNLTR 201 (276)
Q Consensus 190 ~~~~L~~L~l~~ 201 (276)
-.|+|+.|+-..
T Consensus 141 ll~~L~~LD~~d 152 (260)
T KOG2739|consen 141 LLPSLKYLDGCD 152 (260)
T ss_pred Hhhhhccccccc
Confidence 468888877443
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.25 E-value=0.00016 Score=45.91 Aligned_cols=13 Identities=31% Similarity=0.452 Sum_probs=7.6
Q ss_pred cCCCccEEecCCC
Q 023841 190 NYQELESLNLTRY 202 (276)
Q Consensus 190 ~~~~L~~L~l~~c 202 (276)
.+++|++|++++|
T Consensus 47 ~l~~L~~L~l~~N 59 (61)
T PF13855_consen 47 NLPNLRYLDLSNN 59 (61)
T ss_dssp TSTTESEEEETSS
T ss_pred CCCCCCEEeCcCC
Confidence 4566666666654
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.12 E-value=0.00027 Score=44.88 Aligned_cols=36 Identities=25% Similarity=0.299 Sum_probs=16.8
Q ss_pred CCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCC
Q 023841 139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGC 176 (276)
Q Consensus 139 ~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c 176 (276)
+++|++|+++++ .++.-.-. ...++++|++|++++|
T Consensus 24 l~~L~~L~l~~N-~l~~i~~~-~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 24 LPNLETLDLSNN-NLTSIPPD-AFSNLPNLRYLDLSNN 59 (61)
T ss_dssp GTTESEEEETSS-SESEEETT-TTTTSTTESEEEETSS
T ss_pred CCCCCEeEccCC-ccCccCHH-HHcCCCCCCEEeCcCC
Confidence 455555555543 33211111 1235566666666654
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.11 E-value=0.0058 Score=35.90 Aligned_cols=36 Identities=31% Similarity=0.423 Sum_probs=17.4
Q ss_pred CCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCC
Q 023841 167 HIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMI 206 (276)
Q Consensus 167 ~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it 206 (276)
+|++|+++++ .|++ +.....++++|+.|+++++ .++
T Consensus 2 ~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~N-~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNN-QITD--LPPELSNLPNLETLNLSNN-PIS 37 (44)
T ss_dssp T-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETSS-CCS
T ss_pred cceEEEccCC-CCcc--cCchHhCCCCCCEEEecCC-CCC
Confidence 4566666654 4443 2221234666666666665 444
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.00 E-value=0.0039 Score=52.17 Aligned_cols=37 Identities=5% Similarity=-0.066 Sum_probs=25.8
Q ss_pred CccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841 230 RFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 269 (276)
Q Consensus 230 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 269 (276)
..|..+++..+++..-..+..+ +..|-|+.+.+++.|
T Consensus 374 YSLvnLDl~~N~Ie~ldeV~~I---G~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 374 YSLVNLDLSSNQIEELDEVNHI---GNLPCLETLRLTGNP 410 (490)
T ss_pred hhheeccccccchhhHHHhccc---ccccHHHHHhhcCCC
Confidence 4577778877776655445444 578888888887765
No 44
>PLN03150 hypothetical protein; Provisional
Probab=95.89 E-value=0.014 Score=55.09 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=16.1
Q ss_pred CCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCC
Q 023841 139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGC 176 (276)
Q Consensus 139 ~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c 176 (276)
+++|+.|+|+++ .++...-..+. .+++|+.|+++++
T Consensus 465 l~~L~~LdLs~N-~lsg~iP~~l~-~L~~L~~L~Ls~N 500 (623)
T PLN03150 465 ITSLEVLDLSYN-SFNGSIPESLG-QLTSLRILNLNGN 500 (623)
T ss_pred CCCCCEEECCCC-CCCCCCchHHh-cCCCCCEEECcCC
Confidence 455555555544 23222112222 4555555555554
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.87 E-value=0.001 Score=61.74 Aligned_cols=95 Identities=13% Similarity=0.091 Sum_probs=47.3
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCC-----CCCCHHH--HHHHHhcCchhhHHHHHcCCCccceeccc
Q 023841 166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY-----VNMILLG--LFYIWSNNILLMSEFIYHGIRFFQAVQIN 238 (276)
Q Consensus 166 ~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c-----~~it~~~--l~~l~~~~~~~l~~~~~~~~~~L~~l~l~ 238 (276)
+.|++|+|+++ .+++.. .+ +.|++|++|||+++ +.++..| +..+.-++....+-.....+++|..|+++
T Consensus 187 ~ale~LnLshN-k~~~v~--~L-r~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDls 262 (1096)
T KOG1859|consen 187 PALESLNLSHN-KFTKVD--NL-RRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLS 262 (1096)
T ss_pred HHhhhhccchh-hhhhhH--HH-HhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchh
Confidence 45677777764 343333 22 23667777777664 1122222 11111122222222244566778888888
Q ss_pred ccCCCCCcceeEEEeeccCCCCceeeeec
Q 023841 239 SSNGGDHLAFAYIIETNTYKHGKEKHIIE 267 (276)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~L~~l~~~~ 267 (276)
|+.+.+...+..+ ..+-.|+.|.+.+
T Consensus 263 yNll~~hseL~pL---wsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 263 YNLLSEHSELEPL---WSLSSLIVLWLEG 288 (1096)
T ss_pred HhhhhcchhhhHH---HHHHHHHHHhhcC
Confidence 8887766444333 2334455555544
No 46
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.86 E-value=0.0074 Score=30.26 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=10.4
Q ss_pred CCCcEEecCCCCCCCHHHHHHHH
Q 023841 166 KHIIDLNLSGCKNLLDKSLQLIA 188 (276)
Q Consensus 166 ~~L~~L~l~~c~~ltd~~~~~l~ 188 (276)
++|++|++++| .|+++++..|+
T Consensus 2 ~~L~~L~l~~n-~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNN-QITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSS-BEHHHHHHHHH
T ss_pred CCCCEEEccCC-cCCHHHHHHhC
Confidence 45555555554 35555555443
No 47
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=0.0047 Score=51.12 Aligned_cols=117 Identities=20% Similarity=0.176 Sum_probs=76.2
Q ss_pred cCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCH-HHHHH
Q 023841 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTD-IGIQH 160 (276)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~-~~l~~ 160 (276)
.+.+.++|++.+| .++|.. |... ++.|+-|.++- ++|+. ++.+.. |.+|++|.|..+ .|.+ +.+..
T Consensus 17 dl~~vkKLNcwg~-~L~DIs---ic~k----Mp~lEVLsLSv-NkIss--L~pl~r-CtrLkElYLRkN-~I~sldEL~Y 83 (388)
T KOG2123|consen 17 DLENVKKLNCWGC-GLDDIS---ICEK----MPLLEVLSLSV-NKISS--LAPLQR-CTRLKELYLRKN-CIESLDELEY 83 (388)
T ss_pred HHHHhhhhcccCC-CccHHH---HHHh----cccceeEEeec-ccccc--chhHHH-HHHHHHHHHHhc-ccccHHHHHH
Confidence 3567888999887 555543 2232 48899999988 56655 444444 899999999876 4544 33444
Q ss_pred HHHhCCCCcEEecCCCCCCC---HHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHh
Q 023841 161 LVKNCKHIIDLNLSGCKNLL---DKSLQLIADNYQELESLNLTRYVNMILLGLFYIWS 215 (276)
Q Consensus 161 l~~~~~~L~~L~l~~c~~lt---d~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~ 215 (276)
.+++|+|+.|.|-.+.... ..-=..+.+-+|+|++|| + ..+|.+.+.....
T Consensus 84 -LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD--n-v~VteeEle~ALr 137 (388)
T KOG2123|consen 84 -LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD--N-VPVTEEELEEALR 137 (388)
T ss_pred -HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc--C-ccccHHHHHHHHh
Confidence 4589999999887543322 222223455689999987 2 3577766665444
No 48
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=95.40 E-value=0.0095 Score=51.63 Aligned_cols=77 Identities=10% Similarity=0.087 Sum_probs=48.7
Q ss_pred HhcCCCccEEecCCCCCCCHH---HHHHHHh--------cCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeecc
Q 023841 188 ADNYQELESLNLTRYVNMILL---GLFYIWS--------NNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNT 256 (276)
Q Consensus 188 ~~~~~~L~~L~l~~c~~it~~---~l~~l~~--------~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~ 256 (276)
++.+|+|++|++++. .+|.. +++.++. +......+..+.|...|+.|++..+.++... . ..+ +.
T Consensus 270 f~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~-~-~aF--~~ 344 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA-P-GAF--QT 344 (498)
T ss_pred HhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEe-c-ccc--cc
Confidence 346899999999996 67652 2322222 2233344567788899999999888775542 2 122 45
Q ss_pred CCCCceeeeecce
Q 023841 257 YKHGKEKHIIETI 269 (276)
Q Consensus 257 ~~~L~~l~~~~~~ 269 (276)
...|.+|++-..+
T Consensus 345 ~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 345 LFSLSTLNLLSNP 357 (498)
T ss_pred cceeeeeehccCc
Confidence 5677777776544
No 49
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=95.34 E-value=0.0028 Score=58.06 Aligned_cols=187 Identities=14% Similarity=0.159 Sum_probs=96.8
Q ss_pred CccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHh
Q 023841 58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS 137 (276)
Q Consensus 58 ~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 137 (276)
+++++.+++.+....+. -.+....+|..|.+++. .+.+..|-... ..+.+|..+++|. ++++- +-....
T Consensus 174 ~LqtL~Ls~NPL~hfQL---rQLPsmtsL~vLhms~T----qRTl~N~Ptsl-d~l~NL~dvDlS~-N~Lp~--vPecly 242 (1255)
T KOG0444|consen 174 MLQTLKLSNNPLNHFQL---RQLPSMTSLSVLHMSNT----QRTLDNIPTSL-DDLHNLRDVDLSE-NNLPI--VPECLY 242 (1255)
T ss_pred hhhhhhcCCChhhHHHH---hcCccchhhhhhhcccc----cchhhcCCCch-hhhhhhhhccccc-cCCCc--chHHHh
Confidence 45667777655332221 11234455666666652 22222222111 1247788888887 45543 222234
Q ss_pred hCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCC--HHHHHHHHhcCCCccEEecCCCCCCCHHHH----H
Q 023841 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLL--DKSLQLIADNYQELESLNLTRYVNMILLGL----F 211 (276)
Q Consensus 138 ~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~lt--d~~~~~l~~~~~~L~~L~l~~c~~it~~~l----~ 211 (276)
..++|+.|+|+++ .++.-.+. ...-.+|++|+++++ .++ ...+ . .++.|+.|.+... +++-+|+ .
T Consensus 243 ~l~~LrrLNLS~N-~iteL~~~--~~~W~~lEtLNlSrN-QLt~LP~av---c-KL~kL~kLy~n~N-kL~FeGiPSGIG 313 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGN-KITELNMT--EGEWENLETLNLSRN-QLTVLPDAV---C-KLTKLTKLYANNN-KLTFEGIPSGIG 313 (1255)
T ss_pred hhhhhheeccCcC-ceeeeecc--HHHHhhhhhhccccc-hhccchHHH---h-hhHHHHHHHhccC-cccccCCccchh
Confidence 4788999999976 45432110 012247888888885 443 1221 1 2566776666553 4443332 2
Q ss_pred HHHh-------cCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841 212 YIWS-------NNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 269 (276)
Q Consensus 212 ~l~~-------~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 269 (276)
.+.+ ++..-+.+--+-.|.+|+.|.++.+.+..- ...+ .-+|.|+.|+++..+
T Consensus 314 KL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTL---PeaI--HlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 314 KLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITL---PEAI--HLLPDLKVLDLRENP 373 (1255)
T ss_pred hhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeec---hhhh--hhcCCcceeeccCCc
Confidence 2211 111111222345677888888877774322 1223 456778888887765
No 50
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.27 E-value=0.054 Score=52.04 Aligned_cols=94 Identities=19% Similarity=0.274 Sum_probs=51.2
Q ss_pred CCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHH
Q 023841 84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK 163 (276)
Q Consensus 84 ~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~ 163 (276)
++|+.|.+.+ ++++. + +...++|++|++++ +.++.- ....++|+.|+++++ .++ .+..
T Consensus 222 ~~L~~L~L~~-N~Lt~-----L----P~lp~~Lk~LdLs~-N~LtsL-----P~lp~sL~~L~Ls~N-~L~-----~Lp~ 279 (788)
T PRK15387 222 AHITTLVIPD-NNLTS-----L----PALPPELRTLEVSG-NQLTSL-----PVLPPGLLELSIFSN-PLT-----HLPA 279 (788)
T ss_pred cCCCEEEccC-CcCCC-----C----CCCCCCCcEEEecC-CccCcc-----cCcccccceeeccCC-chh-----hhhh
Confidence 4677777776 34432 1 12247788888877 355531 122456777777765 332 2222
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCC
Q 023841 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMI 206 (276)
Q Consensus 164 ~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it 206 (276)
..++|+.|+++++ .++. +....++|+.|+++++ .++
T Consensus 280 lp~~L~~L~Ls~N-~Lt~-----LP~~p~~L~~LdLS~N-~L~ 315 (788)
T PRK15387 280 LPSGLCKLWIFGN-QLTS-----LPVLPPGLQELSVSDN-QLA 315 (788)
T ss_pred chhhcCEEECcCC-cccc-----ccccccccceeECCCC-ccc
Confidence 2346777777775 3431 1222466777777775 444
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.21 E-value=0.019 Score=33.66 Aligned_cols=13 Identities=38% Similarity=0.401 Sum_probs=5.8
Q ss_pred hCCCCcEEecCCC
Q 023841 164 NCKHIIDLNLSGC 176 (276)
Q Consensus 164 ~~~~L~~L~l~~c 176 (276)
++++|+.|+++++
T Consensus 22 ~l~~L~~L~l~~N 34 (44)
T PF12799_consen 22 NLPNLETLNLSNN 34 (44)
T ss_dssp TCTTSSEEEETSS
T ss_pred CCCCCCEEEecCC
Confidence 3444444444443
No 52
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.02 E-value=0.027 Score=54.92 Aligned_cols=18 Identities=6% Similarity=-0.099 Sum_probs=11.3
Q ss_pred cCCCCceeeeecceeccc
Q 023841 256 TYKHGKEKHIIETIKTGQ 273 (276)
Q Consensus 256 ~~~~L~~l~~~~~~~~~~ 273 (276)
-.|||+.+.+..|..+.|
T Consensus 768 f~~~L~~l~l~~~~~~e~ 785 (889)
T KOG4658|consen 768 FAPHLTSLSLVSCRLLED 785 (889)
T ss_pred ccCcccEEEEeccccccc
Confidence 346677777766666554
No 53
>PLN03150 hypothetical protein; Provisional
Probab=94.96 E-value=0.034 Score=52.43 Aligned_cols=81 Identities=17% Similarity=0.107 Sum_probs=44.4
Q ss_pred ccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCcc
Q 023841 116 LESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELE 195 (276)
Q Consensus 116 L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~ 195 (276)
++.|+++++ .+....-..+. .+++|+.|+|+++ .++...-..+ ..+++|+.|+++++ .++...-..+. ++++|+
T Consensus 420 v~~L~L~~n-~L~g~ip~~i~-~L~~L~~L~Ls~N-~l~g~iP~~~-~~l~~L~~LdLs~N-~lsg~iP~~l~-~L~~L~ 493 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPNDIS-KLRHLQSINLSGN-SIRGNIPPSL-GSITSLEVLDLSYN-SFNGSIPESLG-QLTSLR 493 (623)
T ss_pred EEEEECCCC-CccccCCHHHh-CCCCCCEEECCCC-cccCcCChHH-hCCCCCCEEECCCC-CCCCCCchHHh-cCCCCC
Confidence 555666653 33321112222 3677888888765 3432211222 36778888888876 44422222232 477888
Q ss_pred EEecCCC
Q 023841 196 SLNLTRY 202 (276)
Q Consensus 196 ~L~l~~c 202 (276)
.|+++++
T Consensus 494 ~L~Ls~N 500 (623)
T PLN03150 494 ILNLNGN 500 (623)
T ss_pred EEECcCC
Confidence 8888776
No 54
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=94.95 E-value=0.038 Score=53.01 Aligned_cols=12 Identities=8% Similarity=0.086 Sum_probs=8.8
Q ss_pred CCCccEEeccCC
Q 023841 83 YRHVREINLEFA 94 (276)
Q Consensus 83 ~~~L~~L~l~~~ 94 (276)
.++|++|+++++
T Consensus 241 p~~Lk~LdLs~N 252 (788)
T PRK15387 241 PPELRTLEVSGN 252 (788)
T ss_pred CCCCcEEEecCC
Confidence 467888888774
No 55
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=94.53 E-value=0.017 Score=48.41 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=42.0
Q ss_pred ccCCCccEEeccCCCCCc--HHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHH
Q 023841 81 PRYRHVREINLEFAQDIE--DRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGI 158 (276)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~--~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l 158 (276)
-....|+.+++++ +.++ |+.++. .|.++.|++|. +.+...+ .++ .+++|+.|+|+++ .++ .+
T Consensus 281 dTWq~LtelDLS~-N~I~~iDESvKL--------~Pkir~L~lS~-N~i~~v~--nLa-~L~~L~~LDLS~N-~Ls--~~ 344 (490)
T KOG1259|consen 281 DTWQELTELDLSG-NLITQIDESVKL--------APKLRRLILSQ-NRIRTVQ--NLA-ELPQLQLLDLSGN-LLA--EC 344 (490)
T ss_pred chHhhhhhccccc-cchhhhhhhhhh--------ccceeEEeccc-cceeeeh--hhh-hcccceEeecccc-hhH--hh
Confidence 3455677777777 3332 222222 37788888887 4555532 332 3677888888764 221 12
Q ss_pred HHHHHhCCCCcEEecCC
Q 023841 159 QHLVKNCKHIIDLNLSG 175 (276)
Q Consensus 159 ~~l~~~~~~L~~L~l~~ 175 (276)
..+-..+-|++.|.+++
T Consensus 345 ~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 345 VGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhHhhhcCEeeeehhh
Confidence 22233344555555544
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.47 E-value=0.023 Score=53.21 Aligned_cols=124 Identities=19% Similarity=0.281 Sum_probs=70.5
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCC----------CCcEEecCCCCCCC--
Q 023841 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCK----------HIIDLNLSGCKNLL-- 180 (276)
Q Consensus 113 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~----------~L~~L~l~~c~~lt-- 180 (276)
+..|+.|.+.+|+--+..|+..+-. .|++|--. +- -+.+..+...|- .|...+.+++ .++
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~lr~---qLe~LIC~---~S-l~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN-~L~~m 179 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQELRH---QLEKLICH---NS-LDALRHVFASCGGDISNSPVWNKLATASFSYN-RLVLM 179 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHHHH---hhhhhhhh---cc-HHHHHHHHHHhccccccchhhhhHhhhhcchh-hHHhH
Confidence 4778888888875444445544433 34444222 11 223333333331 3455555553 443
Q ss_pred HHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCC
Q 023841 181 DKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHG 260 (276)
Q Consensus 181 d~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L 260 (276)
|+.+..+ |.|+.|+|+++ ++++.. .+..|+.|++|+++|+.+.....+ ...+|. |
T Consensus 180 D~SLqll----~ale~LnLshN-k~~~v~---------------~Lr~l~~LkhLDlsyN~L~~vp~l----~~~gc~-L 234 (1096)
T KOG1859|consen 180 DESLQLL----PALESLNLSHN-KFTKVD---------------NLRRLPKLKHLDLSYNCLRHVPQL----SMVGCK-L 234 (1096)
T ss_pred HHHHHHH----HHhhhhccchh-hhhhhH---------------HHHhcccccccccccchhcccccc----chhhhh-h
Confidence 5665544 78999999996 666543 234567788999988886544222 223455 7
Q ss_pred ceeeeecce
Q 023841 261 KEKHIIETI 269 (276)
Q Consensus 261 ~~l~~~~~~ 269 (276)
+.|++++.+
T Consensus 235 ~~L~lrnN~ 243 (1096)
T KOG1859|consen 235 QLLNLRNNA 243 (1096)
T ss_pred eeeeecccH
Confidence 777777654
No 57
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=93.98 E-value=0.2 Score=48.25 Aligned_cols=11 Identities=0% Similarity=-0.145 Sum_probs=6.9
Q ss_pred CCCceeeeecc
Q 023841 258 KHGKEKHIIET 268 (276)
Q Consensus 258 ~~L~~l~~~~~ 268 (276)
++|+.|++.+|
T Consensus 367 ~~L~~LdLs~N 377 (754)
T PRK15370 367 PTITTLDVSRN 377 (754)
T ss_pred CCcCEEECCCC
Confidence 46666666655
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.75 E-value=0.027 Score=46.78 Aligned_cols=106 Identities=22% Similarity=0.343 Sum_probs=70.1
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCH-HHHHHHHhcC
Q 023841 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD-KSLQLIADNY 191 (276)
Q Consensus 113 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd-~~~~~l~~~~ 191 (276)
+.+.++|++-+| .++|-. ++..+|.|+.|.|+-+ .|+ .+..+. .|++|++|.|..+ .|.+ ..+..+ .++
T Consensus 18 l~~vkKLNcwg~-~L~DIs---ic~kMp~lEVLsLSvN-kIs--sL~pl~-rCtrLkElYLRkN-~I~sldEL~YL-knl 87 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDIS---ICEKMPLLEVLSLSVN-KIS--SLAPLQ-RCTRLKELYLRKN-CIESLDELEYL-KNL 87 (388)
T ss_pred HHHhhhhcccCC-CccHHH---HHHhcccceeEEeecc-ccc--cchhHH-HHHHHHHHHHHhc-ccccHHHHHHH-hcC
Confidence 467888999897 777743 4566899999999854 343 233333 7999999999885 5654 334444 469
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecc
Q 023841 192 QELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQI 237 (276)
Q Consensus 192 ~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l 237 (276)
|+|+.|.|...+.....|=.+ +...+..+++|+.|+-
T Consensus 88 psLr~LWL~ENPCc~~ag~nY---------R~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEAGQNY---------RRKVLRVLPNLKKLDN 124 (388)
T ss_pred chhhhHhhccCCcccccchhH---------HHHHHHHcccchhccC
Confidence 999999997755444433222 2345666677766553
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.25 E-value=0.038 Score=45.27 Aligned_cols=62 Identities=29% Similarity=0.416 Sum_probs=46.7
Q ss_pred CCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCH-HHHHHHHhcCCCccEEecCCC
Q 023841 139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD-KSLQLIADNYQELESLNLTRY 202 (276)
Q Consensus 139 ~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd-~~~~~l~~~~~~L~~L~l~~c 202 (276)
+|+|+.|.++.+..--..++..++..+|+|++|+++++ .+.+ ..+.-+. ..++|..|++..|
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~-~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLK-ELENLKSLDLFNC 126 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhh-hhcchhhhhcccC
Confidence 67899999996544445668888889999999999995 6654 2232232 4778999999998
No 60
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=93.15 E-value=0.18 Score=26.23 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=12.2
Q ss_pred CCccEEecCCCCCCCHHHHHHHHh
Q 023841 114 QDLESLNLNGCQKISDKGIEIISS 137 (276)
Q Consensus 114 ~~L~~L~l~~c~~l~~~~~~~l~~ 137 (276)
++|++|++++ +.+.++|+.++++
T Consensus 2 ~~L~~LdL~~-N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSN-NKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCC-CCCCHHHHHHHHH
Confidence 3455555555 3555555555544
No 61
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=92.72 E-value=0.042 Score=50.72 Aligned_cols=86 Identities=22% Similarity=0.278 Sum_probs=43.7
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCC--HHHHHHHHhc
Q 023841 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLL--DKSLQLIADN 190 (276)
Q Consensus 113 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~lt--d~~~~~l~~~ 190 (276)
+.+|++|++++ +++....+..+.. +.+|+.|++++. .-|-..+..-...+.||..++++++ +++ .+.+. +
T Consensus 172 L~~LqtL~Ls~-NPL~hfQLrQLPs-mtsL~vLhms~T-qRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly----~ 243 (1255)
T KOG0444|consen 172 LSMLQTLKLSN-NPLNHFQLRQLPS-MTSLSVLHMSNT-QRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLY----K 243 (1255)
T ss_pred HhhhhhhhcCC-ChhhHHHHhcCcc-chhhhhhhcccc-cchhhcCCCchhhhhhhhhcccccc-CCCcchHHHh----h
Confidence 35677777777 4555544444332 445666666643 2221111111123456777777764 443 23332 2
Q ss_pred CCCccEEecCCCCCCCH
Q 023841 191 YQELESLNLTRYVNMIL 207 (276)
Q Consensus 191 ~~~L~~L~l~~c~~it~ 207 (276)
.++|+.|+|++. .+|+
T Consensus 244 l~~LrrLNLS~N-~ite 259 (1255)
T KOG0444|consen 244 LRNLRRLNLSGN-KITE 259 (1255)
T ss_pred hhhhheeccCcC-ceee
Confidence 466777777774 5554
No 62
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=92.53 E-value=0.12 Score=50.56 Aligned_cols=18 Identities=6% Similarity=0.027 Sum_probs=9.6
Q ss_pred HcCCCccceecccccCCC
Q 023841 226 YHGIRFFQAVQINSSNGG 243 (276)
Q Consensus 226 ~~~~~~L~~l~l~~~~~~ 243 (276)
...+++|+.|.+..+.+.
T Consensus 713 ~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 713 LGSLGNLEELSILDCGIS 730 (889)
T ss_pred cccccCcceEEEEcCCCc
Confidence 344455666666555544
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=92.32 E-value=0.35 Score=42.95 Aligned_cols=73 Identities=15% Similarity=0.278 Sum_probs=39.4
Q ss_pred ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (276)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~ 160 (276)
..|.++++|++++| .++. +. .. .++|++|.+++|..++... .. ..++|+.|++++|..+. .
T Consensus 49 ~~~~~l~~L~Is~c-~L~s-----LP-~L---P~sLtsL~Lsnc~nLtsLP-~~---LP~nLe~L~Ls~Cs~L~-----s 109 (426)
T PRK15386 49 EEARASGRLYIKDC-DIES-----LP-VL---PNELTEITIENCNNLTTLP-GS---IPEGLEKLTVCHCPEIS-----G 109 (426)
T ss_pred HHhcCCCEEEeCCC-CCcc-----cC-CC---CCCCcEEEccCCCCcccCC-ch---hhhhhhheEccCccccc-----c
Confidence 34677888888876 3221 11 11 2467888887776542211 01 12467777777765442 1
Q ss_pred HHHhCCCCcEEecCC
Q 023841 161 LVKNCKHIIDLNLSG 175 (276)
Q Consensus 161 l~~~~~~L~~L~l~~ 175 (276)
+. +.|+.|++.+
T Consensus 110 LP---~sLe~L~L~~ 121 (426)
T PRK15386 110 LP---ESVRSLEIKG 121 (426)
T ss_pred cc---cccceEEeCC
Confidence 21 3566666654
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=92.31 E-value=0.041 Score=43.53 Aligned_cols=84 Identities=20% Similarity=0.321 Sum_probs=42.6
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCH-HHHHHHHHhCCCCcEEecCCCCCCCHHH-HH-HHHhc
Q 023841 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTD-IGIQHLVKNCKHIIDLNLSGCKNLLDKS-LQ-LIADN 190 (276)
Q Consensus 114 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~-~~l~~l~~~~~~L~~L~l~~c~~ltd~~-~~-~l~~~ 190 (276)
++|..|.+++ +.|+.-.- .+....|+|..|.|.++ ++.. ..+..++ .||.|+.|.+-++ .+++.. .. ++...
T Consensus 64 ~rL~tLll~n-NrIt~I~p-~L~~~~p~l~~L~LtnN-si~~l~dl~pLa-~~p~L~~Ltll~N-pv~~k~~YR~yvl~k 138 (233)
T KOG1644|consen 64 PRLHTLLLNN-NRITRIDP-DLDTFLPNLKTLILTNN-SIQELGDLDPLA-SCPKLEYLTLLGN-PVEHKKNYRLYVLYK 138 (233)
T ss_pred cccceEEecC-Ccceeecc-chhhhccccceEEecCc-chhhhhhcchhc-cCCccceeeecCC-chhcccCceeEEEEe
Confidence 5566666665 44443110 12333556666666654 2222 1233344 5777777776663 333221 11 12234
Q ss_pred CCCccEEecCCC
Q 023841 191 YQELESLNLTRY 202 (276)
Q Consensus 191 ~~~L~~L~l~~c 202 (276)
.|+|+.||+.+.
T Consensus 139 lp~l~~LDF~kV 150 (233)
T KOG1644|consen 139 LPSLRTLDFQKV 150 (233)
T ss_pred cCcceEeehhhh
Confidence 788888888774
No 65
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=92.12 E-value=0.29 Score=25.46 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=11.5
Q ss_pred CCcEEecCCCCCCCHHHHHHHHh
Q 023841 167 HIIDLNLSGCKNLLDKSLQLIAD 189 (276)
Q Consensus 167 ~L~~L~l~~c~~ltd~~~~~l~~ 189 (276)
+|+.|+|+++ .++++|...+++
T Consensus 3 ~L~~LdL~~N-~i~~~G~~~L~~ 24 (28)
T smart00368 3 SLRELDLSNN-KLGDEGARALAE 24 (28)
T ss_pred ccCEEECCCC-CCCHHHHHHHHH
Confidence 4555555553 555555555543
No 66
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=91.77 E-value=0.0054 Score=47.19 Aligned_cols=84 Identities=19% Similarity=0.238 Sum_probs=41.1
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCC-CCHHHHHHHHhcCC
Q 023841 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKN-LLDKSLQLIADNYQ 192 (276)
Q Consensus 114 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~-ltd~~~~~l~~~~~ 192 (276)
.+++.|.+|+ ++++...- .++. +.+|+.|+++++ .+.+ .-..++ .++.|++|+++-+.. +...|+ .++|
T Consensus 33 s~ITrLtLSH-NKl~~vpp-nia~-l~nlevln~~nn-qie~-lp~~is-sl~klr~lnvgmnrl~~lprgf----gs~p 102 (264)
T KOG0617|consen 33 SNITRLTLSH-NKLTVVPP-NIAE-LKNLEVLNLSNN-QIEE-LPTSIS-SLPKLRILNVGMNRLNILPRGF----GSFP 102 (264)
T ss_pred hhhhhhhccc-CceeecCC-cHHH-hhhhhhhhcccc-hhhh-cChhhh-hchhhhheecchhhhhcCcccc----CCCc
Confidence 4455555665 34332110 1111 456777777653 2211 111222 566777777765311 112222 2467
Q ss_pred CccEEecCCCCCCCHH
Q 023841 193 ELESLNLTRYVNMILL 208 (276)
Q Consensus 193 ~L~~L~l~~c~~it~~ 208 (276)
.||.||+++. ++++.
T Consensus 103 ~levldltyn-nl~e~ 117 (264)
T KOG0617|consen 103 ALEVLDLTYN-NLNEN 117 (264)
T ss_pred hhhhhhcccc-ccccc
Confidence 7888888774 56553
No 67
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=90.46 E-value=0.27 Score=42.96 Aligned_cols=38 Identities=13% Similarity=0.322 Sum_probs=33.6
Q ss_pred CCCCCCcHHHHHHHhcCC-CHhhhHHHhccCHHHHHHHhc
Q 023841 16 TWSKETVPKVIRIMSTRL-SQRDIISLLLVSPWLHRTLVS 54 (276)
Q Consensus 16 ~~~~~~~p~il~~if~~L-~~~~l~~~~~v~~~~~~~~~~ 54 (276)
+|++.+ +|++..|..+| ...|+.+...||+.|+.++..
T Consensus 3 ~Ws~Lp-~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLP-EELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCC-HHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 699977 78999999999 788999999999998886654
No 68
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=90.37 E-value=0.56 Score=42.70 Aligned_cols=87 Identities=16% Similarity=0.169 Sum_probs=59.8
Q ss_pred CCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCC-----HHHHHH
Q 023841 112 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLL-----DKSLQL 186 (276)
Q Consensus 112 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~lt-----d~~~~~ 186 (276)
+.+.+.++++++..-..-+++..+++..|+|..|+|+++...-+...+.-.-....|++|-+.|+.-.+ .+-+.+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHH
Confidence 458899999998544555778889999999999999986222222222222235578999998853322 455667
Q ss_pred HHhcCCCccEEe
Q 023841 187 IADNYQELESLN 198 (276)
Q Consensus 187 l~~~~~~L~~L~ 198 (276)
+.+.+|+|..||
T Consensus 296 i~~~FPKL~~LD 307 (585)
T KOG3763|consen 296 IRELFPKLLRLD 307 (585)
T ss_pred HHHhcchheeec
Confidence 777889988887
No 69
>PRK15386 type III secretion protein GogB; Provisional
Probab=90.36 E-value=0.4 Score=42.56 Aligned_cols=71 Identities=17% Similarity=0.206 Sum_probs=44.8
Q ss_pred CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841 56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135 (276)
Q Consensus 56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 135 (276)
+.....|+++++... .+. .--++|++|.+.+|..++. +.... .++|++|++++|..+..
T Consensus 51 ~~~l~~L~Is~c~L~------sLP-~LP~sLtsL~Lsnc~nLts-----LP~~L---P~nLe~L~Ls~Cs~L~s------ 109 (426)
T PRK15386 51 ARASGRLYIKDCDIE------SLP-VLPNELTEITIENCNNLTT-----LPGSI---PEGLEKLTVCHCPEISG------ 109 (426)
T ss_pred hcCCCEEEeCCCCCc------ccC-CCCCCCcEEEccCCCCccc-----CCchh---hhhhhheEccCcccccc------
Confidence 366788998887422 222 1223799999999876522 11111 26899999999865531
Q ss_pred HhhCCCCCeEeccC
Q 023841 136 SSTCPELKVFSIYW 149 (276)
Q Consensus 136 ~~~~~~L~~L~L~~ 149 (276)
-.++|+.|++..
T Consensus 110 --LP~sLe~L~L~~ 121 (426)
T PRK15386 110 --LPESVRSLEIKG 121 (426)
T ss_pred --cccccceEEeCC
Confidence 134688888764
No 70
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=89.91 E-value=0.73 Score=36.67 Aligned_cols=38 Identities=3% Similarity=0.037 Sum_probs=18.0
Q ss_pred cCCCccceecccccCCCCCccee-EEEeeccCCCCceeeee
Q 023841 227 HGIRFFQAVQINSSNGGDHLAFA-YIIETNTYKHGKEKHII 266 (276)
Q Consensus 227 ~~~~~L~~l~l~~~~~~~~~~~~-~~~~~~~~~~L~~l~~~ 266 (276)
.+|+.|+.+.+-.+++.+.-.+. +.+ ...|+|+.|+.+
T Consensus 110 a~~p~L~~Ltll~Npv~~k~~YR~yvl--~klp~l~~LDF~ 148 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNPVEHKKNYRLYVL--YKLPSLRTLDFQ 148 (233)
T ss_pred ccCCccceeeecCCchhcccCceeEEE--EecCcceEeehh
Confidence 44555555555444443332222 233 456666666544
No 71
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=87.50 E-value=0.73 Score=44.49 Aligned_cols=22 Identities=0% Similarity=-0.210 Sum_probs=11.8
Q ss_pred cCCCccEEecCCCCCCCHHHHHH
Q 023841 190 NYQELESLNLTRYVNMILLGLFY 212 (276)
Q Consensus 190 ~~~~L~~L~l~~c~~it~~~l~~ 212 (276)
.++++..|++.+. .++...+..
T Consensus 413 ~~~~l~~L~L~~N-pls~~tl~~ 434 (754)
T PRK15370 413 EGPQPTRIIVEYN-PFSERTIQN 434 (754)
T ss_pred cCCCccEEEeeCC-CccHHHHHH
Confidence 3455666666664 455444443
No 72
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=86.37 E-value=0.31 Score=41.54 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=33.0
Q ss_pred HHHHHHhcCCCHhhhHHHhccCHHHHHHHhcCCCCccEEec
Q 023841 24 KVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDL 64 (276)
Q Consensus 24 ~il~~if~~L~~~~l~~~~~v~~~~~~~~~~~~~~~~~l~l 64 (276)
|+...||+||+..++..|..||+.|.+ +..++.+|+.+-.
T Consensus 85 hi~e~ilsyld~~sLc~celv~k~W~r-~l~dg~~WKkLie 124 (499)
T KOG0281|consen 85 HIAENILSYLDALSLCACELVCKEWKR-VLSDGMLWKKLIE 124 (499)
T ss_pred HHHHHHHHhcchhhhhHHHHHHHHHHH-HhccchHHHHHHH
Confidence 577889999999999999999999776 5666777776543
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=84.81 E-value=0.58 Score=21.15 Aligned_cols=10 Identities=30% Similarity=0.581 Sum_probs=4.7
Q ss_pred CccEEecCCC
Q 023841 193 ELESLNLTRY 202 (276)
Q Consensus 193 ~L~~L~l~~c 202 (276)
+|+.|++++|
T Consensus 2 ~L~~L~l~~n 11 (17)
T PF13504_consen 2 NLRTLDLSNN 11 (17)
T ss_dssp T-SEEEETSS
T ss_pred ccCEEECCCC
Confidence 4555555554
No 74
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.04 E-value=2.6 Score=37.32 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=16.1
Q ss_pred HHHhccCHHHHHHHhcCCCCccEEecCCcc
Q 023841 39 ISLLLVSPWLHRTLVSYPSLWLVIDLREMN 68 (276)
Q Consensus 39 ~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~ 68 (276)
..+..|=.+.|.+... .....++|+...
T Consensus 372 ~qlt~VPdEVfea~~~--~~Vt~VnfskNq 399 (565)
T KOG0472|consen 372 KQLTLVPDEVFEAAKS--EIVTSVNFSKNQ 399 (565)
T ss_pred cccccCCHHHHHHhhh--cceEEEecccch
Confidence 4666677777764332 245566777643
No 75
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=81.36 E-value=0.65 Score=41.55 Aligned_cols=79 Identities=28% Similarity=0.340 Sum_probs=40.5
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCH-HHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcC
Q 023841 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTD-IGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY 191 (276)
Q Consensus 113 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~-~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~ 191 (276)
+++|+.|++++ +.|++ +..+.. ++.|+.|+++++. +++ .++. .+++|+.++++++ .+++-.-.. ...+
T Consensus 117 ~~~L~~L~ls~-N~I~~--i~~l~~-l~~L~~L~l~~N~-i~~~~~~~----~l~~L~~l~l~~n-~i~~ie~~~-~~~~ 185 (414)
T KOG0531|consen 117 LVNLQVLDLSF-NKITK--LEGLST-LTLLKELNLSGNL-ISDISGLE----SLKSLKLLDLSYN-RIVDIENDE-LSEL 185 (414)
T ss_pred hhcchheeccc-ccccc--ccchhh-ccchhhheeccCc-chhccCCc----cchhhhcccCCcc-hhhhhhhhh-hhhc
Confidence 36777777777 45554 222222 4447777777652 222 1111 2566777777765 333222101 2345
Q ss_pred CCccEEecCCC
Q 023841 192 QELESLNLTRY 202 (276)
Q Consensus 192 ~~L~~L~l~~c 202 (276)
..++.+.+.+.
T Consensus 186 ~~l~~l~l~~n 196 (414)
T KOG0531|consen 186 ISLEELDLGGN 196 (414)
T ss_pred cchHHHhccCC
Confidence 66777776664
No 76
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=79.76 E-value=1.3 Score=39.17 Aligned_cols=138 Identities=17% Similarity=0.217 Sum_probs=67.7
Q ss_pred CccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCc
Q 023841 115 DLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQEL 194 (276)
Q Consensus 115 ~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L 194 (276)
+|+.|++++ +.+.... .-...+++|+.|+++.+ .+++-.-. ....++|+.|+++++ .+++-.. ......+|
T Consensus 141 nL~~L~l~~-N~i~~l~--~~~~~l~~L~~L~l~~N-~l~~l~~~--~~~~~~L~~L~ls~N-~i~~l~~--~~~~~~~L 211 (394)
T COG4886 141 NLKELDLSD-NKIESLP--SPLRNLPNLKNLDLSFN-DLSDLPKL--LSNLSNLNNLDLSGN-KISDLPP--EIELLSAL 211 (394)
T ss_pred hcccccccc-cchhhhh--hhhhccccccccccCCc-hhhhhhhh--hhhhhhhhheeccCC-ccccCch--hhhhhhhh
Confidence 677777777 4544421 12234777888887765 34332211 114567777777775 3321111 11123346
Q ss_pred cEEecCCCCCCCHH-HHHHHHhc-----CchhhH--HHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeee
Q 023841 195 ESLNLTRYVNMILL-GLFYIWSN-----NILLMS--EFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHII 266 (276)
Q Consensus 195 ~~L~l~~c~~it~~-~l~~l~~~-----~~~~l~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 266 (276)
++|.+++...+... .+..+... ....+. ......++.++.+++..+.+.+... . ....+++.+.+.
T Consensus 212 ~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~----~--~~~~~l~~L~~s 285 (394)
T COG4886 212 EELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS----L--GSLTNLRELDLS 285 (394)
T ss_pred hhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc----c--cccCccCEEecc
Confidence 66666664211111 11111110 000000 1244556667788887777766633 2 455577777665
Q ss_pred c
Q 023841 267 E 267 (276)
Q Consensus 267 ~ 267 (276)
+
T Consensus 286 ~ 286 (394)
T COG4886 286 G 286 (394)
T ss_pred C
Confidence 4
No 77
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=78.99 E-value=1.4 Score=37.39 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=29.6
Q ss_pred HHHHHHHhc-----CCCHhhhHHHhccCHHHHHHHhcCCCCccE
Q 023841 23 PKVIRIMST-----RLSQRDIISLLLVSPWLHRTLVSYPSLWLV 61 (276)
Q Consensus 23 p~il~~if~-----~L~~~~l~~~~~v~~~~~~~~~~~~~~~~~ 61 (276)
+|++..||. .++++++.+++.||+.|.. .+.++..|+.
T Consensus 112 dEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~-~~R~~~lwR~ 154 (366)
T KOG2997|consen 112 DEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK-CARDPELWRL 154 (366)
T ss_pred HHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH-HHcChHHHHH
Confidence 478888885 4677999999999999665 5677777764
No 78
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=76.15 E-value=0.45 Score=35.53 Aligned_cols=104 Identities=15% Similarity=0.158 Sum_probs=53.3
Q ss_pred ccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhh
Q 023841 59 WLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST 138 (276)
Q Consensus 59 ~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 138 (276)
...++++.|...-.....+. +....+|+..+++++ +++.+...+-..++.++.|++++ +.+.+...+ ++.
T Consensus 29 ~h~ldLssc~lm~i~davy~-l~~~~el~~i~ls~N------~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE-~Aa- 98 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYM-LSKGYELTKISLSDN------GFKKFPKKFTIKFPTATTLNLAN-NEISDVPEE-LAA- 98 (177)
T ss_pred hhhcccccchhhHHHHHHHH-HhCCceEEEEecccc------hhhhCCHHHhhccchhhhhhcch-hhhhhchHH-Hhh-
Confidence 34456666654321111122 245667777777763 23322222211236777788877 566665555 333
Q ss_pred CCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCC
Q 023841 139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSG 175 (276)
Q Consensus 139 ~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~ 175 (276)
+|.|+.|+++.+ .++ ...+.+++ +.++-.|+.-+
T Consensus 99 m~aLr~lNl~~N-~l~-~~p~vi~~-L~~l~~Lds~~ 132 (177)
T KOG4579|consen 99 MPALRSLNLRFN-PLN-AEPRVIAP-LIKLDMLDSPE 132 (177)
T ss_pred hHHhhhcccccC-ccc-cchHHHHH-HHhHHHhcCCC
Confidence 777888888764 232 22233332 55566666554
No 79
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=74.58 E-value=1.6 Score=32.74 Aligned_cols=38 Identities=26% Similarity=0.257 Sum_probs=20.4
Q ss_pred HHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCC
Q 023841 162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY 202 (276)
Q Consensus 162 ~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c 202 (276)
...++-++.|++.++ .++|--.+ ++ ..|.|+.|++++.
T Consensus 73 t~kf~t~t~lNl~~n-eisdvPeE-~A-am~aLr~lNl~~N 110 (177)
T KOG4579|consen 73 TIKFPTATTLNLANN-EISDVPEE-LA-AMPALRSLNLRFN 110 (177)
T ss_pred hhccchhhhhhcchh-hhhhchHH-Hh-hhHHhhhcccccC
Confidence 334455666666663 44443333 22 3666777777664
No 80
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=70.75 E-value=5.5 Score=35.33 Aligned_cols=98 Identities=13% Similarity=0.097 Sum_probs=58.7
Q ss_pred HhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCH--------HHHHHHHhcCch--hhHHHHHcCCCcc
Q 023841 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMIL--------LGLFYIWSNNIL--LMSEFIYHGIRFF 232 (276)
Q Consensus 163 ~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~--------~~l~~l~~~~~~--~l~~~~~~~~~~L 232 (276)
..+++|..|+++++ .+.|--.+.. ....|+.|++++. .+.. ++++.+...... ...+--..++++|
T Consensus 432 ~~l~kLt~L~L~NN-~Ln~LP~e~~--~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL 507 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNN-LLNDLPEEMG--SLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL 507 (565)
T ss_pred Hhhhcceeeecccc-hhhhcchhhh--hhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence 45689999999985 4443222211 2445999999885 3322 233333322111 1111135677889
Q ss_pred ceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841 233 QAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 269 (276)
Q Consensus 233 ~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 269 (276)
..+++..+.+... .... +.+.||++|.+.+.+
T Consensus 508 ~tLDL~nNdlq~I---Pp~L--gnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 508 TTLDLQNNDLQQI---PPIL--GNMTNLRHLELDGNP 539 (565)
T ss_pred ceeccCCCchhhC---Chhh--ccccceeEEEecCCc
Confidence 9999977775333 3345 789999999998876
No 81
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=70.08 E-value=2.3 Score=37.48 Aligned_cols=10 Identities=40% Similarity=0.654 Sum_probs=5.1
Q ss_pred CCccEEecCC
Q 023841 114 QDLESLNLNG 123 (276)
Q Consensus 114 ~~L~~L~l~~ 123 (276)
++|+.|++++
T Consensus 274 ~~L~~lnlsn 283 (498)
T KOG4237|consen 274 PNLRKLNLSN 283 (498)
T ss_pred ccceEeccCC
Confidence 4555555554
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=68.30 E-value=11 Score=34.59 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=55.2
Q ss_pred ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCC-CCCH-HHHHHHHhhCCCCCeEeccCCCCcCH---
Q 023841 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQ-KISD-KGIEIISSTCPELKVFSIYWNVRVTD--- 155 (276)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~-~l~~-~~~~~l~~~~~~L~~L~L~~~~~l~~--- 155 (276)
.+.|.+..++++++.-..-.++..+++.. |+|+.|+|++.. .+.. ..+.. -+...|++|.+.|++-.+.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~a----pklk~L~LS~N~~~~~~~~el~K--~k~l~Leel~l~GNPlc~tf~~ 288 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIA----PKLKTLDLSHNHSKISSESELDK--LKGLPLEELVLEGNPLCTTFSD 288 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhc----chhheeecccchhhhcchhhhhh--hcCCCHHHeeecCCccccchhh
Confidence 66788888888886556666777788876 999999999831 2211 11111 1345678888887643322
Q ss_pred --HHHHHHHHhCCCCcEEe
Q 023841 156 --IGIQHLVKNCKHIIDLN 172 (276)
Q Consensus 156 --~~l~~l~~~~~~L~~L~ 172 (276)
..+..+-..+|+|..||
T Consensus 289 ~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 289 RSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hHHHHHHHHHhcchheeec
Confidence 23556666788887774
No 83
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=67.61 E-value=13 Score=32.08 Aligned_cols=74 Identities=22% Similarity=0.307 Sum_probs=36.9
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhhCCC---CCeEeccCCCCcCHH---HHHHHHHhCCCCcEEecCCCCCCCHHHHHHH
Q 023841 114 QDLESLNLNGCQKISDKGIEIISSTCPE---LKVFSIYWNVRVTDI---GIQHLVKNCKHIIDLNLSGCKNLLDKSLQLI 187 (276)
Q Consensus 114 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~---L~~L~L~~~~~l~~~---~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l 187 (276)
++++..++++-..|+...+..++..+.+ .+.+.+.+ +..+|. ++..+.+.++.|++|++.+. +||..|+..+
T Consensus 198 ~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~-tr~~d~vA~a~a~ml~~n~sl~slnvesn-FItg~gi~a~ 275 (353)
T KOG3735|consen 198 TGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLAN-TRSSDPVAFAIAEMLKENKSLTSLNVESN-FITGLGIMAL 275 (353)
T ss_pred CCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhc-ccCCchhHHHHHHHHhhcchhhheecccc-ccccHHHHHH
Confidence 5566666655555555555444443322 33333332 223332 23333455666666666663 6666666665
Q ss_pred Hh
Q 023841 188 AD 189 (276)
Q Consensus 188 ~~ 189 (276)
.+
T Consensus 276 ~~ 277 (353)
T KOG3735|consen 276 LR 277 (353)
T ss_pred HH
Confidence 54
No 84
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=66.79 E-value=1.7 Score=38.83 Aligned_cols=81 Identities=30% Similarity=0.454 Sum_probs=54.2
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCH-HHHHHHHHhCCCCcEEecCCCCCCC-HHHHHHHHhc
Q 023841 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTD-IGIQHLVKNCKHIIDLNLSGCKNLL-DKSLQLIADN 190 (276)
Q Consensus 113 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~-~~l~~l~~~~~~L~~L~l~~c~~lt-d~~~~~l~~~ 190 (276)
+.+|+.|++.+ +.+.. +..+...+++|+.|+++++ .|++ .++. .++.|+.|+++++ .|+ -+++. .
T Consensus 94 ~~~l~~l~l~~-n~i~~--i~~~l~~~~~L~~L~ls~N-~I~~i~~l~----~l~~L~~L~l~~N-~i~~~~~~~----~ 160 (414)
T KOG0531|consen 94 LKSLEALDLYD-NKIEK--IENLLSSLVNLQVLDLSFN-KITKLEGLS----TLTLLKELNLSGN-LISDISGLE----S 160 (414)
T ss_pred ccceeeeeccc-cchhh--cccchhhhhcchheecccc-ccccccchh----hccchhhheeccC-cchhccCCc----c
Confidence 57888888887 45443 4442455899999999986 5544 2333 4556999999996 443 22222 2
Q ss_pred CCCccEEecCCCCCCCH
Q 023841 191 YQELESLNLTRYVNMIL 207 (276)
Q Consensus 191 ~~~L~~L~l~~c~~it~ 207 (276)
++.|+.++++++ .+++
T Consensus 161 l~~L~~l~l~~n-~i~~ 176 (414)
T KOG0531|consen 161 LKSLKLLDLSYN-RIVD 176 (414)
T ss_pred chhhhcccCCcc-hhhh
Confidence 678999999987 4544
No 85
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=66.46 E-value=2.9 Score=20.10 Aligned_cols=13 Identities=38% Similarity=0.562 Sum_probs=8.4
Q ss_pred CccEEecCCCCCCC
Q 023841 193 ELESLNLTRYVNMI 206 (276)
Q Consensus 193 ~L~~L~l~~c~~it 206 (276)
+|+.|++++| .++
T Consensus 1 ~L~~Ldls~n-~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGN-NLT 13 (22)
T ss_dssp TESEEEETSS-EES
T ss_pred CccEEECCCC-cCE
Confidence 4677777776 554
No 86
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=63.22 E-value=4.5 Score=35.72 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=16.2
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCC
Q 023841 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWN 150 (276)
Q Consensus 113 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~ 150 (276)
+++|+.|+++.+ .+++.. ......++|+.|+++++
T Consensus 162 l~~L~~L~l~~N-~l~~l~--~~~~~~~~L~~L~ls~N 196 (394)
T COG4886 162 LPNLKNLDLSFN-DLSDLP--KLLSNLSNLNNLDLSGN 196 (394)
T ss_pred cccccccccCCc-hhhhhh--hhhhhhhhhhheeccCC
Confidence 366666666663 443322 11113445555555543
No 87
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=54.58 E-value=13 Score=25.65 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=23.3
Q ss_pred cCCCCCCCcHHHHHHHhcCCCHhhhHHH
Q 023841 14 EETWSKETVPKVIRIMSTRLSQRDIISL 41 (276)
Q Consensus 14 ~~~~~~~~~p~il~~if~~L~~~~l~~~ 41 (276)
...|..+| +|+-..|+++|+..|+...
T Consensus 69 ~~~w~~LP-~EIk~~Il~~L~~~dL~~l 95 (97)
T PF09372_consen 69 NNYWNILP-IEIKYKILEYLSNKDLKKL 95 (97)
T ss_pred CCchhhCC-HHHHHHHHHcCCHHHHHHH
Confidence 36799988 8999999999999998654
No 88
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=53.06 E-value=50 Score=28.56 Aligned_cols=85 Identities=16% Similarity=0.214 Sum_probs=61.6
Q ss_pred HHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCC---CCcEEecCCCCCCCHHH---HHHHHhcCCCccEEecCCC
Q 023841 129 DKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCK---HIIDLNLSGCKNLLDKS---LQLIADNYQELESLNLTRY 202 (276)
Q Consensus 129 ~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~---~L~~L~l~~c~~ltd~~---~~~l~~~~~~L~~L~l~~c 202 (276)
+..+..+-..-|+|++.++....+|+...+..+...+. ..+.+.+.+- ..+|.. +.....-++.|++|++.+.
T Consensus 187 e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~t-r~~d~vA~a~a~ml~~n~sl~slnvesn 265 (353)
T KOG3735|consen 187 ESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANT-RSSDPVAFAIAEMLKENKSLTSLNVESN 265 (353)
T ss_pred HHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcc-cCCchhHHHHHHHHhhcchhhheecccc
Confidence 44566677777899999999888899888877765554 5666666653 344333 3333345899999999996
Q ss_pred CCCCHHHHHHHHh
Q 023841 203 VNMILLGLFYIWS 215 (276)
Q Consensus 203 ~~it~~~l~~l~~ 215 (276)
-||..|+.++..
T Consensus 266 -FItg~gi~a~~~ 277 (353)
T KOG3735|consen 266 -FITGLGIMALLR 277 (353)
T ss_pred -ccccHHHHHHHH
Confidence 799999888765
No 89
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=47.06 E-value=8.4 Score=35.82 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=33.5
Q ss_pred ccCCCCCCCcHHHHHHHhcCCCHhhhHHHhccCHHHHHHHhcCCCCc
Q 023841 13 EEETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLW 59 (276)
Q Consensus 13 ~~~~~~~~~~p~il~~if~~L~~~~l~~~~~v~~~~~~~~~~~~~~~ 59 (276)
.+.++-...-+|....||.+|+.+++..+++||+.|....-.+...|
T Consensus 103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 34444444414888999999999999999999999766444444433
No 90
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=37.74 E-value=30 Score=16.97 Aligned_cols=11 Identities=27% Similarity=0.483 Sum_probs=6.9
Q ss_pred CCccEEecCCC
Q 023841 192 QELESLNLTRY 202 (276)
Q Consensus 192 ~~L~~L~l~~c 202 (276)
++|++|+++++
T Consensus 2 ~~L~~L~L~~N 12 (26)
T smart00369 2 PNLRELDLSNN 12 (26)
T ss_pred CCCCEEECCCC
Confidence 45666666665
No 91
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=37.74 E-value=30 Score=16.97 Aligned_cols=11 Identities=27% Similarity=0.483 Sum_probs=6.9
Q ss_pred CCccEEecCCC
Q 023841 192 QELESLNLTRY 202 (276)
Q Consensus 192 ~~L~~L~l~~c 202 (276)
++|++|+++++
T Consensus 2 ~~L~~L~L~~N 12 (26)
T smart00370 2 PNLRELDLSNN 12 (26)
T ss_pred CCCCEEECCCC
Confidence 45666666665
No 92
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=24.24 E-value=8.4 Score=27.65 Aligned_cols=12 Identities=8% Similarity=0.171 Sum_probs=4.2
Q ss_pred ccCCCccEEecc
Q 023841 81 PRYRHVREINLE 92 (276)
Q Consensus 81 ~~~~~L~~L~l~ 92 (276)
..|++|+.+.+.
T Consensus 9 ~~~~~l~~i~~~ 20 (129)
T PF13306_consen 9 YNCSNLESITFP 20 (129)
T ss_dssp TT-TT--EEEET
T ss_pred hCCCCCCEEEEC
Confidence 344455555544
No 93
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=23.93 E-value=37 Score=24.44 Aligned_cols=8 Identities=13% Similarity=0.513 Sum_probs=3.4
Q ss_pred HhCCCCcE
Q 023841 163 KNCKHIID 170 (276)
Q Consensus 163 ~~~~~L~~ 170 (276)
.+|+.|..
T Consensus 58 ~~~~~l~~ 65 (120)
T PF03382_consen 58 AGCSSLNQ 65 (120)
T ss_pred hhhhhcCC
Confidence 34444444
No 94
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=21.89 E-value=72 Score=16.25 Aligned_cols=15 Identities=13% Similarity=0.155 Sum_probs=10.4
Q ss_pred HHhcCCCccEEecCC
Q 023841 187 IADNYQELESLNLTR 201 (276)
Q Consensus 187 l~~~~~~L~~L~l~~ 201 (276)
+...+|+|+.||...
T Consensus 8 Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 8 VIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHCCccceecccc
Confidence 444588888888654
No 95
>PF13013 F-box-like_2: F-box-like domain
Probab=21.57 E-value=96 Score=22.08 Aligned_cols=26 Identities=8% Similarity=0.194 Sum_probs=22.7
Q ss_pred cH-HHHHHHhcCCCHhhhHHHhccCHH
Q 023841 22 VP-KVIRIMSTRLSQRDIISLLLVSPW 47 (276)
Q Consensus 22 ~p-~il~~if~~L~~~~l~~~~~v~~~ 47 (276)
+| |++..||.+-...++..+.+.++.
T Consensus 25 LP~ELl~~I~~~C~~~~l~~l~~~~~~ 51 (109)
T PF13013_consen 25 LPWELLQLIFDYCNDPILLALSRTCRA 51 (109)
T ss_pred ChHHHHHHHHhhcCcHHHHHHHHHHHH
Confidence 57 788999999999999888888884
Done!