Query 023841
Match_columns 276
No_of_seqs 157 out of 1908
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 13:40:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023841.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023841hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 99.9 4.8E-25 1.6E-29 189.3 23.6 242 13-268 5-282 (336)
2 2p1m_B Transport inhibitor res 99.9 8E-22 2.8E-26 181.4 13.6 183 14-204 3-223 (594)
3 2ast_B S-phase kinase-associat 99.8 2.8E-17 9.5E-22 140.8 17.9 195 57-267 93-302 (336)
4 3ogk_B Coronatine-insensitive 99.8 1.3E-17 4.3E-22 153.4 15.0 193 53-269 314-524 (592)
5 2p1m_B Transport inhibitor res 99.7 3E-17 1E-21 150.9 16.1 153 95-270 357-518 (594)
6 3ogk_B Coronatine-insensitive 99.7 5.3E-17 1.8E-21 149.3 14.6 194 55-273 291-502 (592)
7 3e4g_A ATP synthase subunit S, 99.7 3.1E-17 1.1E-21 126.4 6.1 95 114-211 61-158 (176)
8 3e4g_A ATP synthase subunit S, 99.6 1.4E-16 4.9E-21 122.7 5.7 106 83-195 60-170 (176)
9 2ca6_A RAN GTPase-activating p 99.6 2.4E-14 8.3E-19 124.9 14.0 203 55-272 92-317 (386)
10 3un9_A NLR family member X1; l 99.6 1.3E-14 4.3E-19 126.2 11.2 178 56-252 71-260 (372)
11 1z7x_W Ribonuclease inhibitor; 99.5 8E-14 2.7E-18 124.2 15.3 151 58-214 86-248 (461)
12 1z7x_W Ribonuclease inhibitor; 99.5 1.6E-13 5.3E-18 122.3 16.8 182 81-268 167-380 (461)
13 2ca6_A RAN GTPase-activating p 99.5 1.6E-13 5.5E-18 119.7 15.9 222 31-269 32-285 (386)
14 3un9_A NLR family member X1; l 99.5 2.8E-13 9.4E-18 117.7 16.6 153 56-215 100-261 (372)
15 3goz_A Leucine-rich repeat-con 99.5 6.3E-13 2.2E-17 115.0 13.4 198 56-269 50-264 (362)
16 3goz_A Leucine-rich repeat-con 99.4 1.1E-12 3.7E-17 113.6 9.5 201 52-269 17-236 (362)
17 1io0_A Tropomodulin; LRR prote 99.4 3.7E-11 1.3E-15 94.0 16.1 124 81-209 33-167 (185)
18 1io0_A Tropomodulin; LRR prote 99.2 1.4E-10 4.8E-15 90.7 13.6 122 112-245 34-166 (185)
19 4ezg_A Putative uncharacterize 99.0 1.1E-10 3.8E-15 92.1 3.1 60 113-176 87-146 (197)
20 2ra8_A Uncharacterized protein 99.0 2.4E-09 8.1E-14 92.4 11.1 151 52-215 167-329 (362)
21 2ra8_A Uncharacterized protein 99.0 6.4E-11 2.2E-15 102.2 1.2 120 114-245 193-322 (362)
22 4fmz_A Internalin; leucine ric 99.0 2.6E-09 9E-14 91.4 10.4 125 113-269 220-344 (347)
23 4ezg_A Putative uncharacterize 98.9 3E-10 1E-14 89.6 3.3 154 82-273 42-195 (197)
24 1pgv_A TMD-1, tropomodulin TMD 98.9 3.7E-08 1.3E-12 77.0 14.8 130 73-207 31-171 (197)
25 1h6u_A Internalin H; cell adhe 98.9 2.1E-09 7.3E-14 90.7 8.3 148 81-270 82-229 (308)
26 1ozn_A Reticulon 4 receptor; N 98.9 1.6E-10 5.5E-15 96.4 -1.5 185 56-272 55-239 (285)
27 4glp_A Monocyte differentiatio 98.8 3.4E-10 1.2E-14 95.7 0.3 186 58-269 92-283 (310)
28 1h6t_A Internalin B; cell adhe 98.8 1.2E-08 4E-13 85.5 9.2 165 58-269 47-211 (291)
29 4fmz_A Internalin; leucine ric 98.8 1.1E-08 3.9E-13 87.4 9.0 183 56-269 65-254 (347)
30 3rfs_A Internalin B, repeat mo 98.8 5.7E-10 1.9E-14 92.5 0.2 179 57-272 41-219 (272)
31 1wwl_A Monocyte differentiatio 98.8 3.2E-09 1.1E-13 89.8 4.7 143 55-207 93-242 (312)
32 1h6u_A Internalin H; cell adhe 98.8 1.4E-08 4.8E-13 85.7 8.3 165 58-269 42-206 (308)
33 1ozn_A Reticulon 4 receptor; N 98.8 2.5E-10 8.5E-15 95.2 -2.5 182 56-269 31-212 (285)
34 1m9s_A Internalin B; cell inva 98.8 1E-08 3.5E-13 94.3 7.9 167 58-271 44-210 (605)
35 2o6q_A Variable lymphocyte rec 98.8 9.9E-10 3.4E-14 90.9 0.7 182 56-270 36-217 (270)
36 1o6v_A Internalin A; bacterial 98.7 3.4E-08 1.2E-12 88.0 9.4 40 226-271 349-388 (466)
37 2je0_A Acidic leucine-rich nuc 98.7 6.5E-09 2.2E-13 77.9 4.0 38 164-202 86-123 (149)
38 2je0_A Acidic leucine-rich nuc 98.7 5.6E-08 1.9E-12 72.7 8.9 135 53-201 13-149 (149)
39 2ell_A Acidic leucine-rich nuc 98.7 4.6E-10 1.6E-14 86.1 -2.8 138 81-242 21-159 (168)
40 4glp_A Monocyte differentiatio 98.7 1.9E-09 6.6E-14 91.0 0.7 184 54-269 114-305 (310)
41 2z62_A TOLL-like receptor 4, v 98.7 8.1E-10 2.8E-14 91.7 -1.7 197 56-271 27-237 (276)
42 1pgv_A TMD-1, tropomodulin TMD 98.7 2.8E-07 9.4E-12 72.1 12.6 119 112-241 39-168 (197)
43 3v47_A TOLL-like receptor 5B a 98.7 1.8E-09 6.3E-14 95.8 0.1 62 113-176 102-164 (455)
44 2z66_A Variable lymphocyte rec 98.7 3.7E-10 1.3E-14 95.1 -4.4 165 81-273 98-263 (306)
45 1o6v_A Internalin A; bacterial 98.7 4.7E-08 1.6E-12 87.2 8.9 38 226-269 327-364 (466)
46 2id5_A Lingo-1, leucine rich r 98.7 1.2E-09 3.9E-14 97.8 -1.8 135 56-206 31-165 (477)
47 1wwl_A Monocyte differentiatio 98.7 3.8E-09 1.3E-13 89.3 1.3 168 81-269 92-264 (312)
48 3zyj_A Leucine-rich repeat-con 98.6 4.5E-09 1.5E-13 93.1 1.1 39 227-269 252-290 (440)
49 3zyi_A Leucine-rich repeat-con 98.6 1.4E-09 4.8E-14 96.7 -2.6 191 57-268 75-276 (452)
50 2z7x_B TOLL-like receptor 1, v 98.6 1.1E-08 3.8E-13 92.4 3.1 161 81-273 321-483 (520)
51 2z66_A Variable lymphocyte rec 98.6 6.5E-10 2.2E-14 93.6 -4.6 136 113-270 100-235 (306)
52 3zyj_A Leucine-rich repeat-con 98.6 1.5E-09 5.1E-14 96.2 -2.7 191 58-269 65-266 (440)
53 1h6t_A Internalin B; cell adhe 98.6 3.8E-08 1.3E-12 82.4 5.9 150 55-245 66-215 (291)
54 2ell_A Acidic leucine-rich nuc 98.6 3.7E-09 1.3E-13 81.0 -0.6 134 54-202 21-157 (168)
55 3zyi_A Leucine-rich repeat-con 98.6 8.2E-09 2.8E-13 91.7 1.3 196 55-271 97-303 (452)
56 4fcg_A Uncharacterized protein 98.6 1.1E-09 3.6E-14 93.5 -4.5 43 226-272 249-291 (328)
57 2z80_A TOLL-like receptor 2, v 98.6 6.7E-09 2.3E-13 89.2 0.2 192 55-273 98-316 (353)
58 3t6q_A CD180 antigen; protein- 98.6 2.7E-09 9.3E-14 98.2 -2.5 40 226-269 472-511 (606)
59 3vq2_A TLR4, TOLL-like recepto 98.6 2.7E-09 9.3E-14 98.1 -2.7 136 113-272 423-559 (606)
60 2z81_A CD282 antigen, TOLL-lik 98.6 2.8E-09 9.7E-14 96.8 -2.7 174 57-244 26-210 (549)
61 3v47_A TOLL-like receptor 5B a 98.6 1.3E-08 4.5E-13 90.2 1.5 167 82-273 210-410 (455)
62 1fs1_A SKP2 F-BOX, cyclin A/CD 98.6 7.9E-08 2.7E-12 58.6 4.5 48 14-63 6-53 (53)
63 3rfs_A Internalin B, repeat mo 98.5 3.8E-09 1.3E-13 87.5 -2.1 173 54-268 60-232 (272)
64 2z63_A TOLL-like receptor 4, v 98.5 4.8E-10 1.6E-14 102.3 -8.3 91 164-273 443-533 (570)
65 2z80_A TOLL-like receptor 2, v 98.5 7.1E-09 2.4E-13 89.1 -0.7 174 58-245 53-237 (353)
66 3t6q_A CD180 antigen; protein- 98.5 4.8E-09 1.6E-13 96.5 -2.0 42 226-272 520-561 (606)
67 2z81_A CD282 antigen, TOLL-lik 98.5 1.3E-07 4.5E-12 85.8 7.2 160 82-273 332-512 (549)
68 1m9s_A Internalin B; cell inva 98.5 4.9E-08 1.7E-12 89.8 4.4 151 54-245 62-212 (605)
69 3vq2_A TLR4, TOLL-like recepto 98.5 2.6E-09 9E-14 98.2 -4.4 40 226-269 493-532 (606)
70 1xeu_A Internalin C; cellular 98.5 5.2E-08 1.8E-12 80.3 3.6 147 57-245 41-187 (263)
71 3o53_A Protein LRIM1, AGAP0063 98.5 1E-08 3.4E-13 86.9 -1.0 219 16-271 16-250 (317)
72 4fcg_A Uncharacterized protein 98.5 1.7E-09 6E-14 92.1 -5.8 180 56-272 80-267 (328)
73 3rgz_A Protein brassinosteroid 98.5 2.6E-08 9E-13 94.3 1.3 137 55-206 98-236 (768)
74 3o6n_A APL1; leucine-rich repe 98.5 1.3E-08 4.5E-13 88.6 -0.7 84 56-150 92-175 (390)
75 3oja_B Anopheles plasmodium-re 98.5 1.7E-08 5.9E-13 92.8 -0.5 36 113-150 146-181 (597)
76 3m19_A Variable lymphocyte rec 98.5 6.4E-09 2.2E-13 85.1 -3.1 158 84-271 35-192 (251)
77 2o6q_A Variable lymphocyte rec 98.4 7.2E-09 2.4E-13 85.7 -3.0 176 58-269 17-192 (270)
78 2id5_A Lingo-1, leucine rich r 98.4 1.5E-08 5.1E-13 90.5 -1.6 37 55-94 78-114 (477)
79 3o53_A Protein LRIM1, AGAP0063 98.4 1.5E-08 5.2E-13 85.8 -1.7 158 81-270 117-274 (317)
80 3oja_B Anopheles plasmodium-re 98.4 3E-08 1E-12 91.3 -0.2 38 227-271 321-358 (597)
81 3oja_A Leucine-rich immune mol 98.4 3.4E-08 1.2E-12 88.7 0.1 107 139-270 143-249 (487)
82 1ziw_A TOLL-like receptor 3; i 98.4 3.2E-08 1.1E-12 92.2 -0.1 162 56-244 24-185 (680)
83 1xeu_A Internalin C; cellular 98.4 8.3E-08 2.8E-12 79.1 2.2 146 81-269 38-183 (263)
84 3a79_B TLR6, VLRB.59, TOLL-lik 98.4 3.9E-08 1.3E-12 89.7 0.3 161 81-273 350-512 (562)
85 3rgz_A Protein brassinosteroid 98.4 1.8E-08 6.2E-13 95.4 -2.1 38 55-94 124-161 (768)
86 1xku_A Decorin; proteoglycan, 98.4 5.4E-08 1.9E-12 82.7 0.9 37 55-94 74-110 (330)
87 2z63_A TOLL-like receptor 4, v 98.4 2.7E-09 9.1E-14 97.3 -7.8 133 114-269 373-505 (570)
88 3j0a_A TOLL-like receptor 5; m 98.4 7.7E-09 2.6E-13 99.0 -5.1 140 55-207 22-162 (844)
89 1xku_A Decorin; proteoglycan, 98.4 4.9E-08 1.7E-12 83.0 0.4 192 56-269 51-251 (330)
90 3oja_A Leucine-rich immune mol 98.4 2.6E-08 8.9E-13 89.4 -1.5 172 53-269 54-225 (487)
91 3m19_A Variable lymphocyte rec 98.3 3.4E-08 1.1E-12 80.7 -1.5 110 81-202 56-165 (251)
92 4ecn_A Leucine-rich repeat pro 98.3 1.2E-07 4.1E-12 90.6 2.1 111 82-206 489-608 (876)
93 1ogq_A PGIP-2, polygalacturona 98.3 2.5E-09 8.5E-14 90.5 -8.6 195 57-270 50-256 (313)
94 3bz5_A Internalin-J, INLJ; leu 98.3 7.1E-07 2.4E-11 79.4 6.8 177 57-269 42-223 (457)
95 2o6s_A Variable lymphocyte rec 98.3 2.1E-08 7E-13 79.5 -3.0 12 191-202 123-134 (208)
96 1ogq_A PGIP-2, polygalacturona 98.3 5.3E-09 1.8E-13 88.5 -6.9 43 226-272 240-282 (313)
97 3bz5_A Internalin-J, INLJ; leu 98.3 1.1E-06 3.8E-11 78.2 6.9 179 54-269 61-244 (457)
98 4ecn_A Leucine-rich repeat pro 98.3 6.7E-07 2.3E-11 85.5 5.5 119 80-206 444-586 (876)
99 3o6n_A APL1; leucine-rich repe 98.3 8.9E-08 3E-12 83.3 -0.8 114 81-207 66-179 (390)
100 1p9a_G Platelet glycoprotein I 98.3 5.6E-08 1.9E-12 81.3 -2.0 177 56-269 30-206 (290)
101 1p9a_G Platelet glycoprotein I 98.3 5.5E-08 1.9E-12 81.3 -2.0 175 56-269 9-183 (290)
102 2ft3_A Biglycan; proteoglycan, 98.2 5.6E-08 1.9E-12 82.7 -2.4 35 57-94 123-157 (332)
103 2z62_A TOLL-like receptor 4, v 98.2 7.9E-08 2.7E-12 79.5 -2.2 137 84-245 28-164 (276)
104 2z7x_B TOLL-like receptor 1, v 98.2 9.6E-07 3.3E-11 79.6 4.8 161 54-245 321-483 (520)
105 2xwt_C Thyrotropin receptor; s 98.2 1.8E-08 6.1E-13 81.7 -6.2 38 226-270 200-238 (239)
106 1a9n_A U2A', U2A'; complex (nu 98.2 2.6E-07 8.8E-12 71.2 0.7 131 55-202 17-150 (176)
107 1ziw_A TOLL-like receptor 3; i 98.2 6.3E-08 2.2E-12 90.3 -3.8 157 84-268 25-181 (680)
108 2o6s_A Variable lymphocyte rec 98.1 2.2E-07 7.5E-12 73.5 -1.0 112 139-272 51-162 (208)
109 4g8a_A TOLL-like receptor 4; l 98.1 2.2E-07 7.5E-12 85.4 -1.8 135 84-243 52-186 (635)
110 3e6j_A Variable lymphocyte rec 98.1 2.6E-07 8.9E-12 74.4 -1.2 152 59-243 21-172 (229)
111 1a9n_A U2A', U2A'; complex (nu 98.1 3.6E-06 1.2E-10 64.6 5.4 138 81-244 16-154 (176)
112 4g8a_A TOLL-like receptor 4; l 98.1 3E-07 1E-11 84.5 -1.1 136 56-206 51-186 (635)
113 2ft3_A Biglycan; proteoglycan, 98.1 1.9E-07 6.6E-12 79.4 -2.7 190 57-269 54-252 (332)
114 2v9t_B SLIT homolog 2 protein 98.1 2.1E-07 7.2E-12 74.5 -2.4 135 83-243 31-165 (220)
115 4eco_A Uncharacterized protein 98.1 8.3E-07 2.8E-11 82.3 1.3 178 80-270 202-414 (636)
116 2xwt_C Thyrotropin receptor; s 98.0 2E-08 6.8E-13 81.4 -8.8 181 56-269 30-216 (239)
117 4eco_A Uncharacterized protein 98.0 3.3E-07 1.1E-11 84.9 -2.3 35 227-268 563-597 (636)
118 2v70_A SLIT-2, SLIT homolog 2 98.0 3E-07 1E-11 73.6 -2.5 154 59-243 13-166 (220)
119 2v9t_B SLIT homolog 2 protein 98.0 5.3E-07 1.8E-11 72.1 -1.2 133 56-203 31-163 (220)
120 3a79_B TLR6, VLRB.59, TOLL-lik 98.0 3.1E-06 1E-10 77.2 3.1 132 112-269 351-484 (562)
121 2v70_A SLIT-2, SLIT homolog 2 98.0 4.3E-07 1.5E-11 72.7 -2.4 133 57-203 32-164 (220)
122 2xot_A Amphoterin-induced prot 97.9 4.8E-07 1.7E-11 77.9 -2.8 162 82-269 37-200 (361)
123 3j0a_A TOLL-like receptor 5; m 97.9 2E-07 6.7E-12 89.2 -5.7 163 82-271 22-187 (844)
124 3e6j_A Variable lymphocyte rec 97.9 2E-06 6.8E-11 69.2 0.2 132 56-203 39-170 (229)
125 2xot_A Amphoterin-induced prot 97.8 1.4E-06 4.7E-11 75.0 -1.3 135 58-207 40-177 (361)
126 1ds9_A Outer arm dynein; leuci 97.8 9.5E-07 3.2E-11 69.3 -2.6 108 81-206 45-153 (198)
127 3g06_A SSPH2 (leucine-rich rep 97.8 4.1E-05 1.4E-09 70.6 7.6 77 166-271 221-297 (622)
128 2o6r_A Variable lymphocyte rec 97.7 3.8E-06 1.3E-10 64.5 -1.2 129 59-206 9-137 (177)
129 1dce_A Protein (RAB geranylger 97.6 9E-06 3.1E-10 74.2 0.7 125 114-264 441-566 (567)
130 1w8a_A SLIT protein; signaling 97.6 2E-06 7E-11 67.1 -3.7 128 59-203 10-137 (192)
131 1ds9_A Outer arm dynein; leuci 97.6 5.2E-06 1.8E-10 65.0 -1.4 124 56-198 47-180 (198)
132 1jl5_A Outer protein YOPM; leu 97.5 0.00019 6.5E-09 63.6 6.9 13 190-202 235-247 (454)
133 1dce_A Protein (RAB geranylger 97.4 5E-05 1.7E-09 69.3 2.3 105 84-206 441-546 (567)
134 3cvr_A Invasion plasmid antige 97.4 0.00011 3.6E-09 67.1 4.2 34 232-270 209-242 (571)
135 2wfh_A SLIT homolog 2 protein 97.4 1.2E-05 4.1E-10 62.8 -1.9 108 83-203 30-137 (193)
136 3g06_A SSPH2 (leucine-rich rep 97.3 0.00054 1.9E-08 63.1 8.4 83 114-212 221-303 (622)
137 3sb4_A Hypothetical leucine ri 97.3 5.5E-05 1.9E-09 64.0 1.5 13 81-93 121-133 (329)
138 1jl5_A Outer protein YOPM; leu 97.3 0.00083 2.8E-08 59.5 8.9 12 82-93 235-246 (454)
139 4b8c_D Glucose-repressible alc 97.3 4.5E-05 1.5E-09 71.7 0.6 13 164-176 268-280 (727)
140 3cvr_A Invasion plasmid antige 97.2 0.00011 3.8E-09 67.0 2.1 158 57-269 59-218 (571)
141 4b8c_D Glucose-repressible alc 97.2 4.6E-05 1.6E-09 71.7 -0.9 111 81-208 221-331 (727)
142 3sb4_A Hypothetical leucine ri 97.1 5.2E-05 1.8E-09 64.2 -0.7 35 113-150 100-134 (329)
143 1w8a_A SLIT protein; signaling 97.1 2.8E-05 9.5E-10 60.6 -2.4 113 114-245 29-141 (192)
144 2wfh_A SLIT homolog 2 protein 97.1 7.2E-05 2.5E-09 58.3 -0.4 114 56-183 30-143 (193)
145 2o6r_A Variable lymphocyte rec 97.0 0.00038 1.3E-08 53.1 3.4 110 56-178 27-136 (177)
146 3rw6_A Nuclear RNA export fact 97.0 0.0016 5.5E-08 53.3 6.9 13 81-93 124-136 (267)
147 2e31_A FBS1, F-box only protei 96.8 0.00044 1.5E-08 57.3 2.3 45 16-62 50-95 (297)
148 3l2o_B F-box only protein 4; s 96.8 0.00033 1.1E-08 57.7 1.2 48 17-66 5-52 (312)
149 4ay9_X Follicle-stimulating ho 96.5 8.2E-06 2.8E-10 69.8 -10.9 36 56-94 29-64 (350)
150 3g39_A Variable lymphocyte rec 96.4 0.00028 9.6E-09 53.7 -1.4 60 139-202 53-112 (170)
151 3rw6_A Nuclear RNA export fact 96.4 0.0031 1.1E-07 51.6 4.7 84 112-200 168-259 (267)
152 2r9u_A Variable lymphocyte rec 96.4 0.00029 9.8E-09 53.9 -1.4 83 114-202 33-115 (174)
153 3g39_A Variable lymphocyte rec 96.3 0.0005 1.7E-08 52.2 -0.6 103 59-177 11-113 (170)
154 3v7d_B Cell division control p 96.2 0.0013 4.6E-08 57.6 1.7 48 17-65 15-62 (464)
155 2r9u_A Variable lymphocyte rec 95.7 0.00086 2.9E-08 51.2 -1.7 85 83-177 32-116 (174)
156 1p22_A F-BOX/WD-repeat protein 95.4 0.0036 1.2E-07 54.5 1.1 37 25-62 22-58 (435)
157 2ovr_B FBW7, F-BOX/WD repeat p 95.4 0.01 3.4E-07 51.7 3.8 46 15-62 17-62 (445)
158 2ifg_A High affinity nerve gro 94.8 0.0036 1.2E-07 53.0 -0.9 63 81-150 28-90 (347)
159 4fdw_A Leucine rich hypothetic 94.7 0.0028 9.4E-08 55.2 -1.9 14 80-93 176-189 (401)
160 4ay9_X Follicle-stimulating ho 94.7 0.00023 7.7E-09 60.8 -8.8 14 55-68 52-65 (350)
161 2ifg_A High affinity nerve gro 94.2 0.0046 1.6E-07 52.3 -1.7 84 113-202 30-113 (347)
162 4fdw_A Leucine rich hypothetic 93.9 0.0021 7.1E-08 56.0 -4.3 12 112-123 178-189 (401)
163 4gt6_A Cell surface protein; l 88.5 0.042 1.4E-06 47.4 -2.0 103 81-201 262-366 (394)
164 4gt6_A Cell surface protein; l 88.0 0.056 1.9E-06 46.5 -1.5 124 54-201 262-387 (394)
165 4h09_A Hypothetical leucine ri 75.3 0.1 3.6E-06 44.4 -4.7 13 81-93 214-226 (379)
166 4fs7_A Uncharacterized protein 75.0 0.23 7.8E-06 42.7 -2.7 102 138-268 274-376 (394)
167 4h09_A Hypothetical leucine ri 61.6 0.36 1.2E-05 41.0 -4.2 104 80-201 236-342 (379)
168 4fs7_A Uncharacterized protein 61.2 0.41 1.4E-05 41.1 -4.0 101 81-201 273-375 (394)
169 3rfe_A Platelet glycoprotein I 43.7 7 0.00024 27.6 0.8 12 165-176 54-65 (130)
170 2lz0_A Uncharacterized protein 29.1 39 0.0013 22.4 2.7 12 226-237 39-50 (100)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.94 E-value=4.8e-25 Score=189.29 Aligned_cols=242 Identities=18% Similarity=0.248 Sum_probs=173.7
Q ss_pred ccCCCCCCCcHHHHHHHhcCCCHhhhHHHhccCHHHHHHHhcCCCCccEEecCCccCcchhhHHHh--------------
Q 023841 13 EEETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAAL-------------- 78 (276)
Q Consensus 13 ~~~~~~~~~~p~il~~if~~L~~~~l~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~l-------------- 78 (276)
.+..|++.| +|++.+||+||+..|+.+++.||++|+.. ..++..|+.++++....... .+..+
T Consensus 5 ~~~~~~~LP-~eil~~If~~L~~~d~~~~~~vc~~W~~~-~~~~~~~~~l~l~~~~~~~~-~~~~~~~~~l~~L~l~~n~ 81 (336)
T 2ast_B 5 PGVSWDSLP-DELLLGIFSCLCLPELLKVSGVCKRWYRL-ASDESLWQTLDLTGKNLHPD-VTGRLLSQGVIAFRCPRSF 81 (336)
T ss_dssp --CCSSSSC-HHHHHHHHTTSCHHHHHHTTSSCHHHHHH-HTCSTTSSEEECTTCBCCHH-HHHHHHHTTCSEEECTTCE
T ss_pred ccCChhhCC-HHHHHHHHHhCCHHHHHHHHHHHHHHHHH-hcCchhheeeccccccCCHH-HHHhhhhccceEEEcCCcc
Confidence 467898887 89999999999999999999999997764 55688999999987654321 11111
Q ss_pred ------ccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCC
Q 023841 79 ------SIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVR 152 (276)
Q Consensus 79 ------~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~ 152 (276)
....+++|++|++++| .+++.++..+...+ ++|++|++++| .+++.....++. +++|++|++++|..
T Consensus 82 l~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~----~~L~~L~L~~~-~l~~~~~~~l~~-~~~L~~L~L~~~~~ 154 (336)
T 2ast_B 82 MDQPLAEHFSPFRVQHMDLSNS-VIEVSTLHGILSQC----SKLQNLSLEGL-RLSDPIVNTLAK-NSNLVRLNLSGCSG 154 (336)
T ss_dssp ECSCCCSCCCCBCCCEEECTTC-EECHHHHHHHHTTB----CCCSEEECTTC-BCCHHHHHHHTT-CTTCSEEECTTCBS
T ss_pred ccccchhhccCCCCCEEEccCC-CcCHHHHHHHHhhC----CCCCEEeCcCc-ccCHHHHHHHhc-CCCCCEEECCCCCC
Confidence 0134588999999985 57777677666655 89999999986 788877777766 88999999998878
Q ss_pred cCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCC-CccEEecCCCC-CCCHHHHHHHHhcCchh----------
Q 023841 153 VTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ-ELESLNLTRYV-NMILLGLFYIWSNNILL---------- 220 (276)
Q Consensus 153 l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~-~L~~L~l~~c~-~it~~~l~~l~~~~~~~---------- 220 (276)
+++.++..+...+++|++|++++|..+++.++..+...+| +|++|++++|. .+++.++..+....+..
T Consensus 155 l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 234 (336)
T 2ast_B 155 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 234 (336)
T ss_dssp CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT
T ss_pred CCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc
Confidence 8888888877789999999999987888888777777788 99999999986 67877776654321110
Q ss_pred ---hHHHHHcCCCccceecccccC-CCCCcceeEEEeeccCCCCceeeeecc
Q 023841 221 ---MSEFIYHGIRFFQAVQINSSN-GGDHLAFAYIIETNTYKHGKEKHIIET 268 (276)
Q Consensus 221 ---l~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~~~~L~~l~~~~~ 268 (276)
.....+..++.|+.++++++. +.+. ++..+ ..+++|+.|++.+|
T Consensus 235 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~l---~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 235 LKNDCFQEFFQLNYLQHLSLSRCYDIIPE-TLLEL---GEIPTLKTLQVFGI 282 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTCTTCCGG-GGGGG---GGCTTCCEEECTTS
T ss_pred CCHHHHHHHhCCCCCCEeeCCCCCCCCHH-HHHHH---hcCCCCCEEeccCc
Confidence 001123445666666665553 2222 22222 35677777777766
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=8e-22 Score=181.42 Aligned_cols=183 Identities=21% Similarity=0.296 Sum_probs=122.0
Q ss_pred cCCCCCCCcHHHHHHHhcCCC-HhhhHHHhccCHHHHHHHh--------------------cCCCCccEEecCCccCcch
Q 023841 14 EETWSKETVPKVIRIMSTRLS-QRDIISLLLVSPWLHRTLV--------------------SYPSLWLVIDLREMNNAGN 72 (276)
Q Consensus 14 ~~~~~~~~~p~il~~if~~L~-~~~l~~~~~v~~~~~~~~~--------------------~~~~~~~~l~l~~~~~~~~ 72 (276)
...|++.| +|++.+||+||+ .+|+.+++.||++|++... ...+.++.++++++....+
T Consensus 3 ~d~~~~LP-devL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 81 (594)
T 2p1m_B 3 KRIALSFP-EEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFAD 81 (594)
T ss_dssp -------C-HHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGG
T ss_pred ccchhhCC-HHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhh
Confidence 35688877 799999999999 9999999999999886411 1123345555554332211
Q ss_pred -------------hhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhC
Q 023841 73 -------------RLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC 139 (276)
Q Consensus 73 -------------~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 139 (276)
..+..+. ..+++|++|+++++ .+++..+..+...+ ++|++|++++|..+++.++..+...|
T Consensus 82 ~~l~~~~~~~~~~~~l~~l~-~~~~~L~~L~L~~~-~~~~~~~~~l~~~~----~~L~~L~L~~~~~~~~~~l~~~~~~~ 155 (594)
T 2p1m_B 82 FNLVPDGWGGYVYPWIEAMS-SSYTWLEEIRLKRM-VVTDDCLELIAKSF----KNFKVLVLSSCEGFSTDGLAAIAATC 155 (594)
T ss_dssp GTCSCTTSCCBCHHHHHHHH-HHCTTCCEEEEESC-BCCHHHHHHHHHHC----TTCCEEEEESCEEEEHHHHHHHHHHC
T ss_pred cccccccccchhhHHHHHHH-HhCCCCCeEEeeCc-EEcHHHHHHHHHhC----CCCcEEeCCCcCCCCHHHHHHHHHhC
Confidence 1122222 46778888888875 57777777777655 78888888887677777777777778
Q ss_pred CCCCeEeccCCCCcCHHH---HHHHHHhCCCCcEEecCCCC-CCCHHHHHHHHhcCCCccEEecCCCCC
Q 023841 140 PELKVFSIYWNVRVTDIG---IQHLVKNCKHIIDLNLSGCK-NLLDKSLQLIADNYQELESLNLTRYVN 204 (276)
Q Consensus 140 ~~L~~L~L~~~~~l~~~~---l~~l~~~~~~L~~L~l~~c~-~ltd~~~~~l~~~~~~L~~L~l~~c~~ 204 (276)
++|++|++++|. +++.+ +..+...+++|++|++++|. .+++.++..+..++++|++|++++|..
T Consensus 156 ~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 156 RNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp TTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred CCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 888888887763 44333 33344466777777777764 577778877777788888888888743
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=2.8e-17 Score=140.77 Aligned_cols=195 Identities=19% Similarity=0.226 Sum_probs=110.9
Q ss_pred CCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHH
Q 023841 57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS 136 (276)
Q Consensus 57 ~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 136 (276)
+.++.++++++... ...+.... ..+++|++|++++| .+++.....+.. +++|++|++++|..+++.++..+.
T Consensus 93 ~~L~~L~L~~~~l~-~~~~~~~~-~~~~~L~~L~L~~~-~l~~~~~~~l~~-----~~~L~~L~L~~~~~l~~~~l~~~~ 164 (336)
T 2ast_B 93 FRVQHMDLSNSVIE-VSTLHGIL-SQCSKLQNLSLEGL-RLSDPIVNTLAK-----NSNLVRLNLSGCSGFSEFALQTLL 164 (336)
T ss_dssp BCCCEEECTTCEEC-HHHHHHHH-TTBCCCSEEECTTC-BCCHHHHHHHTT-----CTTCSEEECTTCBSCCHHHHHHHH
T ss_pred CCCCEEEccCCCcC-HHHHHHHH-hhCCCCCEEeCcCc-ccCHHHHHHHhc-----CCCCCEEECCCCCCCCHHHHHHHH
Confidence 45556666655422 22122222 45666666666664 455555555433 366666666665556666666655
Q ss_pred hhCCCCCeEeccCCCCcCHHHHHHHHHhCC-CCcEEecCCCC-CCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHH
Q 023841 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCK-HIIDLNLSGCK-NLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIW 214 (276)
Q Consensus 137 ~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~-~L~~L~l~~c~-~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~ 214 (276)
..+++|++|++++|..+++.++..+...++ +|++|++++|. .+++.++..+...+++|++|++++|..+++.++..+.
T Consensus 165 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 244 (336)
T 2ast_B 165 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 244 (336)
T ss_dssp HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh
Confidence 566666666666665666666555555666 66666666664 4666666666556666666666666446655544443
Q ss_pred hc----------CchhhHH---HHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeec
Q 023841 215 SN----------NILLMSE---FIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIE 267 (276)
Q Consensus 215 ~~----------~~~~l~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~ 267 (276)
.. +. .... ..+..+++|+.+++..+ +++. ++..+. . +|+.|++..
T Consensus 245 ~l~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l~~~-i~~~-~~~~l~--~---~l~~L~l~~ 302 (336)
T 2ast_B 245 QLNYLQHLSLSRCY-DIIPETLLELGEIPTLKTLQVFGI-VPDG-TLQLLK--E---ALPHLQINC 302 (336)
T ss_dssp GCTTCCEEECTTCT-TCCGGGGGGGGGCTTCCEEECTTS-SCTT-CHHHHH--H---HSTTSEESC
T ss_pred CCCCCCEeeCCCCC-CCCHHHHHHHhcCCCCCEEeccCc-cCHH-HHHHHH--h---hCcceEEec
Confidence 21 11 0001 13456889999999877 5555 444333 2 344455543
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=1.3e-17 Score=153.43 Aligned_cols=193 Identities=19% Similarity=0.240 Sum_probs=104.8
Q ss_pred hcCCCCccEEecCCccCcchhhHHHhccccCCCccEEeccC----------CCCCcHHHHHHHHHHccCCCCCccEEecC
Q 023841 53 VSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEF----------AQDIEDRHLELLKTKCLGSLQDLESLNLN 122 (276)
Q Consensus 53 ~~~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~----------~~~l~~~~~~~i~~~~~~~~~~L~~L~l~ 122 (276)
....+.++.+++.. ...+..+..+. ..+++|++|++++ |..+++.++..+...| ++|++|+++
T Consensus 314 ~~~~~~L~~L~L~~--~~~~~~l~~~~-~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~----~~L~~L~l~ 386 (592)
T 3ogk_B 314 IQKCPNLEVLETRN--VIGDRGLEVLA-QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC----QELEYMAVY 386 (592)
T ss_dssp HTTCTTCCEEEEEG--GGHHHHHHHHH-HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC----TTCSEEEEE
T ss_pred HHhCcCCCEEeccC--ccCHHHHHHHH-HhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC----ccCeEEEee
Confidence 34445555555551 12222333332 3455566666653 5555555555555544 556666653
Q ss_pred CCCCCCHHHHHHHHhhCCCCCeEeccC---CCCcCH----HHHHHHHHhCCCCcEEecCCCC-CCCHHHHHHHHhcCCCc
Q 023841 123 GCQKISDKGIEIISSTCPELKVFSIYW---NVRVTD----IGIQHLVKNCKHIIDLNLSGCK-NLLDKSLQLIADNYQEL 194 (276)
Q Consensus 123 ~c~~l~~~~~~~l~~~~~~L~~L~L~~---~~~l~~----~~l~~l~~~~~~L~~L~l~~c~-~ltd~~~~~l~~~~~~L 194 (276)
|+.+++.++..++..|++|++|++++ |..+++ +++..+..+|++|++|++++|. .+++.++..+...+++|
T Consensus 387 -~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L 465 (592)
T 3ogk_B 387 -VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNV 465 (592)
T ss_dssp -ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTC
T ss_pred -cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccc
Confidence 34555555555555555666655542 334443 3455555555556666655543 25555555555555556
Q ss_pred cEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841 195 ESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 269 (276)
Q Consensus 195 ~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 269 (276)
+.|++++| .+++.++.. ...+|++|+.++++++.+++. ++..+. ..+++|+.|++.+|.
T Consensus 466 ~~L~L~~n-~l~~~~~~~------------~~~~~~~L~~L~l~~n~l~~~-~~~~~~--~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 466 RWMLLGYV-GESDEGLME------------FSRGCPNLQKLEMRGCCFSER-AIAAAV--TKLPSLRYLWVQGYR 524 (592)
T ss_dssp CEEEECSC-CSSHHHHHH------------HHTCCTTCCEEEEESCCCBHH-HHHHHH--HHCSSCCEEEEESCB
T ss_pred eEeeccCC-CCCHHHHHH------------HHhcCcccCeeeccCCCCcHH-HHHHHH--HhcCccCeeECcCCc
Confidence 66666555 455555444 235567777777777765444 333333 467777777777776
No 5
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.74 E-value=3e-17 Score=150.91 Aligned_cols=153 Identities=21% Similarity=0.306 Sum_probs=81.8
Q ss_pred CCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEecc-----CCCCcC----HHHHHHHHHhC
Q 023841 95 QDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIY-----WNVRVT----DIGIQHLVKNC 165 (276)
Q Consensus 95 ~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~-----~~~~l~----~~~l~~l~~~~ 165 (276)
..+++.++..+...| ++|++|.+++ +.+++.++..++..|++|+.|+++ +|..++ +.++..+...|
T Consensus 357 ~~l~~~~l~~l~~~~----~~L~~L~~~~-~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~ 431 (594)
T 2p1m_B 357 VALTEQGLVSVSMGC----PKLESVLYFC-RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHC 431 (594)
T ss_dssp SCCCHHHHHHHHHHC----TTCCEEEEEE-SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHhc----hhHHHHHHhc-CCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhC
Confidence 344444444444433 4444443322 344444444444444444444444 333444 44444444444
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCC
Q 023841 166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDH 245 (276)
Q Consensus 166 ~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~ 245 (276)
++|+.|++++ .+++.++..+...+++|+.|++++| .+++.++..+ ..+|++|+.++++++.+++.
T Consensus 432 ~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l------------~~~~~~L~~L~L~~n~~~~~ 496 (594)
T 2p1m_B 432 KDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHV------------LSGCDSLRKLEIRDCPFGDK 496 (594)
T ss_dssp TTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHH------------HHHCTTCCEEEEESCSCCHH
T ss_pred CCccEEeecC--cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHH------------HhcCCCcCEEECcCCCCcHH
Confidence 4444444433 4444444444444444555555444 3444444332 24588899999988888555
Q ss_pred cceeEEEeeccCCCCceeeeeccee
Q 023841 246 LAFAYIIETNTYKHGKEKHIIETIK 270 (276)
Q Consensus 246 ~~~~~~~~~~~~~~L~~l~~~~~~~ 270 (276)
++..+. ..+++|+.|++.+|..
T Consensus 497 -~~~~~~--~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 497 -ALLANA--SKLETMRSLWMSSCSV 518 (594)
T ss_dssp -HHHHTG--GGGGGSSEEEEESSCC
T ss_pred -HHHHHH--HhCCCCCEEeeeCCCC
Confidence 554444 6789999999999875
No 6
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=5.3e-17 Score=149.26 Aligned_cols=194 Identities=15% Similarity=0.216 Sum_probs=146.2
Q ss_pred CCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCC----------C
Q 023841 55 YPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNG----------C 124 (276)
Q Consensus 55 ~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~----------c 124 (276)
..+.++.++++++. ..+..+..+. ..+++|++|++. ..+++.++..+...| ++|++|++++ |
T Consensus 291 ~~~~L~~L~Ls~~~-l~~~~~~~~~-~~~~~L~~L~L~--~~~~~~~l~~~~~~~----~~L~~L~L~~g~~~~~~~~~~ 362 (592)
T 3ogk_B 291 FAAQIRKLDLLYAL-LETEDHCTLI-QKCPNLEVLETR--NVIGDRGLEVLAQYC----KQLKRLRIERGADEQGMEDEE 362 (592)
T ss_dssp GGGGCCEEEETTCC-CCHHHHHHHH-TTCTTCCEEEEE--GGGHHHHHHHHHHHC----TTCCEEEEECCCCSSTTSSTT
T ss_pred hcCCCcEEecCCCc-CCHHHHHHHH-HhCcCCCEEecc--CccCHHHHHHHHHhC----CCCCEEEeecCcccccccccc
Confidence 34467777777766 3333332322 577888888887 457777888777766 7888888884 7
Q ss_pred CCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecC---CCCCCCH----HHHHHHHhcCCCccEE
Q 023841 125 QKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLS---GCKNLLD----KSLQLIADNYQELESL 197 (276)
Q Consensus 125 ~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~---~c~~ltd----~~~~~l~~~~~~L~~L 197 (276)
+.+++.++..++..|++|++|+++ |..+++.++..++.++++|++|+++ .|..+++ .++..+...|++|++|
T Consensus 363 ~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L 441 (592)
T 3ogk_B 363 GLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRF 441 (592)
T ss_dssp CCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred CccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEE
Confidence 788888888888888888888884 5688888888888778888888887 3556775 5777777788888888
Q ss_pred ecCCCC-CCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecceeccc
Q 023841 198 NLTRYV-NMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ 273 (276)
Q Consensus 198 ~l~~c~-~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 273 (276)
++++|. .+++.++..+. ..+++|+.+++.++.+++. ++..+. .+|++|+.|++++|. ++|
T Consensus 442 ~L~~~~~~l~~~~~~~~~------------~~~~~L~~L~L~~n~l~~~-~~~~~~--~~~~~L~~L~l~~n~-l~~ 502 (592)
T 3ogk_B 442 AFYLRQGGLTDLGLSYIG------------QYSPNVRWMLLGYVGESDE-GLMEFS--RGCPNLQKLEMRGCC-FSE 502 (592)
T ss_dssp EEECCGGGCCHHHHHHHH------------HSCTTCCEEEECSCCSSHH-HHHHHH--TCCTTCCEEEEESCC-CBH
T ss_pred EEecCCCCccHHHHHHHH------------HhCccceEeeccCCCCCHH-HHHHHH--hcCcccCeeeccCCC-CcH
Confidence 887764 37777776643 4577899999999888776 555555 789999999999998 554
No 7
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.68 E-value=3.1e-17 Score=126.36 Aligned_cols=95 Identities=13% Similarity=0.224 Sum_probs=67.4
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHH---hCCCCcEEecCCCCCCCHHHHHHHHhc
Q 023841 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK---NCKHIIDLNLSGCKNLLDKSLQLIADN 190 (276)
Q Consensus 114 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~---~~~~L~~L~l~~c~~ltd~~~~~l~~~ 190 (276)
.+|++|++++| .+++.|+..+. .|++|++|+|++|..+||.++..++. .+++|++|++++|..|||.|+..+. +
T Consensus 61 ~~L~~LDLs~~-~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~ 137 (176)
T 3e4g_A 61 YKIQAIDATDS-CIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-H 137 (176)
T ss_dssp CCEEEEEEESC-CCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-G
T ss_pred ceEeEEeCcCC-CccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-c
Confidence 45777777776 47777777664 57777777777777777777777764 2456777777777777777777776 3
Q ss_pred CCCccEEecCCCCCCCHHHHH
Q 023841 191 YQELESLNLTRYVNMILLGLF 211 (276)
Q Consensus 191 ~~~L~~L~l~~c~~it~~~l~ 211 (276)
|++|++|++++|+.+||.++.
T Consensus 138 ~~~L~~L~L~~c~~Itd~gl~ 158 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKEKEKI 158 (176)
T ss_dssp CTTCCEEEEESCTTCCCHHHH
T ss_pred CCCCCEEECCCCCCCCchHHH
Confidence 777777777777777776643
No 8
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.64 E-value=1.4e-16 Score=122.68 Aligned_cols=106 Identities=24% Similarity=0.253 Sum_probs=94.2
Q ss_pred CCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhh---CCCCCeEeccCCCCcCHHHHH
Q 023841 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST---CPELKVFSIYWNVRVTDIGIQ 159 (276)
Q Consensus 83 ~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~---~~~L~~L~L~~~~~l~~~~l~ 159 (276)
..+|++|++++|. ++|.++..+. . +++|++|++++|..++|.++..++.. |++|++|+|++|..+||.++.
T Consensus 60 ~~~L~~LDLs~~~-Itd~GL~~L~-~----~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 60 KYKIQAIDATDSC-IMSIGFDHME-G----LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCCEEEEEEESCC-CCGGGGGGGT-T----CSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred CceEeEEeCcCCC-ccHHHHHHhc-C----CCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 3479999999985 9999999884 3 59999999999999999999999973 789999999999999999999
Q ss_pred HHHHhCCCCcEEecCCCCCCCHHH--HHHHHhcCCCcc
Q 023841 160 HLVKNCKHIIDLNLSGCKNLLDKS--LQLIADNYQELE 195 (276)
Q Consensus 160 ~l~~~~~~L~~L~l~~c~~ltd~~--~~~l~~~~~~L~ 195 (276)
.++ .|++|++|++++|..+||.+ ...+...+|+++
T Consensus 134 ~L~-~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 134 ALH-HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp HGG-GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred HHh-cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 997 69999999999999999877 455666788876
No 9
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.57 E-value=2.4e-14 Score=124.94 Aligned_cols=203 Identities=11% Similarity=0.070 Sum_probs=114.2
Q ss_pred CCCCccEEecCCccCcchh--hHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCC---------CCccEEecCC
Q 023841 55 YPSLWLVIDLREMNNAGNR--LVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSL---------QDLESLNLNG 123 (276)
Q Consensus 55 ~~~~~~~l~l~~~~~~~~~--~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~---------~~L~~L~l~~ 123 (276)
..+.++.++++++...... .+.. .+..+++|++|++++| .+++.+...+...+. .+ ++|++|++++
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~-~l~~~~~~~~~~~L~~L~L~~ 168 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLID-FLSKHTPLEHLYLHNN-GLGPQAGAKIARALQ-ELAVNKKAKNAPPLRSIICGR 168 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHH-HHHHCTTCCEEECCSS-CCHHHHHHHHHHHHH-HHHHHHHHHTCCCCCEEECCS
T ss_pred hCCcccEEECCCCcCCHHHHHHHHH-HHHhCCCCCEEECcCC-CCCHHHHHHHHHHHH-HHhhhhhcccCCCCcEEECCC
Confidence 3455666666655433211 1111 1245666666666663 455555444444220 11 5677777776
Q ss_pred CCCCCHHHHHHHH---hhCCCCCeEeccCCCCcCHHHHHHHHH----hCCCCcEEecCCCCCCCHHHHHHHH---hcCCC
Q 023841 124 CQKISDKGIEIIS---STCPELKVFSIYWNVRVTDIGIQHLVK----NCKHIIDLNLSGCKNLLDKSLQLIA---DNYQE 193 (276)
Q Consensus 124 c~~l~~~~~~~l~---~~~~~L~~L~L~~~~~l~~~~l~~l~~----~~~~L~~L~l~~c~~ltd~~~~~l~---~~~~~ 193 (276)
| .+++.++..++ ..+++|++|++++| .+++.++..++. .+++|+.|++++| .+++.+...+. ..+++
T Consensus 169 n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 169 N-RLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPN 245 (386)
T ss_dssp S-CCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTT
T ss_pred C-CCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCC
Confidence 3 56655555332 25667777777766 566666554443 5667777777765 56665554443 34667
Q ss_pred ccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEee--ccCCCCceeeeecceec
Q 023841 194 LESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIET--NTYKHGKEKHIIETIKT 271 (276)
Q Consensus 194 L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~--~~~~~L~~l~~~~~~~~ 271 (276)
|++|++++| .+++.+...+.. .+....++.|+.++++++.+++. ++..+... ..+|+|+.|++.++.-.
T Consensus 246 L~~L~L~~n-~i~~~~~~~l~~-------~l~~~~~~~L~~L~L~~n~i~~~-g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 246 LRELGLNDC-LLSARGAAAVVD-------AFSKLENIGLQTLRLQYNEIELD-AVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp CCEEECTTC-CCCHHHHHHHHH-------HHHTCSSCCCCEEECCSSCCBHH-HHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred cCEEECCCC-CCchhhHHHHHH-------HHhhccCCCeEEEECcCCcCCHH-HHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 777777776 566666555431 11113378888888888887663 22222211 34788999988887644
Q ss_pred c
Q 023841 272 G 272 (276)
Q Consensus 272 ~ 272 (276)
+
T Consensus 317 ~ 317 (386)
T 2ca6_A 317 E 317 (386)
T ss_dssp T
T ss_pred c
Confidence 3
No 10
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.57 E-value=1.3e-14 Score=126.19 Aligned_cols=178 Identities=15% Similarity=0.117 Sum_probs=140.1
Q ss_pred CCCccEEecCCccCcch--hhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHH
Q 023841 56 PSLWLVIDLREMNNAGN--RLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIE 133 (276)
Q Consensus 56 ~~~~~~l~l~~~~~~~~--~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 133 (276)
.+.++.++++++..... ..+.......+++|++|++++| .+++.++..+...+ ++|++|++++| .+++.++.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L----~~L~~L~Ls~n-~l~~~~~~ 144 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVF----LRARKLGLQLN-SLGPEACK 144 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHH----HTEEEEECCSS-CCCHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHH----HhccHhhcCCC-CCCHHHHH
Confidence 45688999998875532 2222322234579999999995 79999999998877 78999999995 89999888
Q ss_pred HHHh----hCCCCCeEeccCCCCcCHHHHHHHH---HhCCCCcEEecCCCCCCCHHHHHHHHh---cCCCccEEecCCCC
Q 023841 134 IISS----TCPELKVFSIYWNVRVTDIGIQHLV---KNCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRYV 203 (276)
Q Consensus 134 ~l~~----~~~~L~~L~L~~~~~l~~~~l~~l~---~~~~~L~~L~l~~c~~ltd~~~~~l~~---~~~~L~~L~l~~c~ 203 (276)
.++. .+++|++|+|++| .+++.++..++ ..+++|++|++++| .+++.++..+.. .+++|+.|++++|
T Consensus 145 ~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N- 221 (372)
T 3un9_A 145 DLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN- 221 (372)
T ss_dssp HHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS-
T ss_pred HHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC-
Confidence 8765 3678999999998 79988877765 46789999999997 799998877764 5779999999998
Q ss_pred CCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEE
Q 023841 204 NMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYII 252 (276)
Q Consensus 204 ~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 252 (276)
.+++.+...++. .+..++.|+.++++++.+++. +...+.
T Consensus 222 ~i~~~g~~~l~~---------~L~~~~~L~~L~Ls~N~i~~~-g~~~L~ 260 (372)
T 3un9_A 222 GAGDTAALALAR---------AAREHPSLELLHLYFNELSSE-GRQVLR 260 (372)
T ss_dssp CCCHHHHHHHHH---------HHHHCSSCCEEECTTSSCCHH-HHHHHH
T ss_pred CCCHHHHHHHHH---------HHHhCCCCCEEeccCCCCCHH-HHHHHH
Confidence 899998887642 345677899999999998877 655443
No 11
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.55 E-value=8e-14 Score=124.19 Aligned_cols=151 Identities=19% Similarity=0.279 Sum_probs=99.5
Q ss_pred CccEEecCCccCcchh--hHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841 58 LWLVIDLREMNNAGNR--LVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135 (276)
Q Consensus 58 ~~~~l~l~~~~~~~~~--~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 135 (276)
.++.++++++...... .+.. .+..+++|++|+++++ .+++.+...+...+....++|++|++++| .+++.+...+
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l 162 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPL 162 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHH-HHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHH
Confidence 5777777776544321 1111 2357788888888874 58888888777766555567888888885 6776654433
Q ss_pred ---HhhCCCCCeEeccCCCCcCHHHHHHHHHh----CCCCcEEecCCCCCCCHHHHHHHH---hcCCCccEEecCCCCCC
Q 023841 136 ---SSTCPELKVFSIYWNVRVTDIGIQHLVKN----CKHIIDLNLSGCKNLLDKSLQLIA---DNYQELESLNLTRYVNM 205 (276)
Q Consensus 136 ---~~~~~~L~~L~L~~~~~l~~~~l~~l~~~----~~~L~~L~l~~c~~ltd~~~~~l~---~~~~~L~~L~l~~c~~i 205 (276)
...+++|++|+++++ .+++.++..++.. .++|++|++++| .+++.++..+. ..+++|++|++++| .+
T Consensus 163 ~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l 239 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSN-KL 239 (461)
T ss_dssp HHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSS-BC
T ss_pred HHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCC-cC
Confidence 334788888888876 5777776666543 447888888876 66665543333 35777888888776 67
Q ss_pred CHHHHHHHH
Q 023841 206 ILLGLFYIW 214 (276)
Q Consensus 206 t~~~l~~l~ 214 (276)
++.++..+.
T Consensus 240 ~~~~~~~l~ 248 (461)
T 1z7x_W 240 GDVGMAELC 248 (461)
T ss_dssp HHHHHHHHH
T ss_pred ChHHHHHHH
Confidence 777766554
No 12
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.55 E-value=1.6e-13 Score=122.32 Aligned_cols=182 Identities=15% Similarity=0.198 Sum_probs=114.1
Q ss_pred ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHH---hhCCCCCeEeccCCCCcCHHH
Q 023841 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS---STCPELKVFSIYWNVRVTDIG 157 (276)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~---~~~~~L~~L~L~~~~~l~~~~ 157 (276)
..+++|++|+++++ .+++.+...+...+....++|++|++++| .+++.++..+. ..+++|++|+++++ .+++.+
T Consensus 167 ~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~ 243 (461)
T 1z7x_W 167 RAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSN-KLGDVG 243 (461)
T ss_dssp HHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHH
T ss_pred hhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHH
Confidence 35677777877774 57777777776655434467888888885 67766544333 35788888888876 677777
Q ss_pred HHHHHH----hCCCCcEEecCCCCCCCHHHHHHHHh---cCCCccEEecCCCCCCCHHHHHHHHhcCc---hhh------
Q 023841 158 IQHLVK----NCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRYVNMILLGLFYIWSNNI---LLM------ 221 (276)
Q Consensus 158 l~~l~~----~~~~L~~L~l~~c~~ltd~~~~~l~~---~~~~L~~L~l~~c~~it~~~l~~l~~~~~---~~l------ 221 (276)
+..++. .+++|++|++++| .+++.++..+.. .+++|++|+++++ .+++.+...+..... ..+
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcC
Confidence 666654 4678888888886 777777554443 4788888888886 677777666654200 000
Q ss_pred -----------HHHHHcCCCccceecccccCCCCCcceeEEEee--ccCCCCceeeeecc
Q 023841 222 -----------SEFIYHGIRFFQAVQINSSNGGDHLAFAYIIET--NTYKHGKEKHIIET 268 (276)
Q Consensus 222 -----------~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~--~~~~~L~~l~~~~~ 268 (276)
-...+..++.|+.++++++.+++. +...+... ...++|++|++.+|
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~-~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA-GVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH-HHHHHHHHHTSTTCCCCEEECTTS
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccc-cHHHHHHHHcCCCCceEEEECCCC
Confidence 011234556677777766665554 32222210 12567777777776
No 13
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.54 E-value=1.6e-13 Score=119.72 Aligned_cols=222 Identities=11% Similarity=0.084 Sum_probs=146.9
Q ss_pred cCCCHhhhHHHhccCHHHHHHH---hcCCCCccEEecCCccCc--ch---hhHHHh--ccccCCCccEEeccCCCCCcHH
Q 023841 31 TRLSQRDIISLLLVSPWLHRTL---VSYPSLWLVIDLREMNNA--GN---RLVAAL--SIPRYRHVREINLEFAQDIEDR 100 (276)
Q Consensus 31 ~~L~~~~l~~~~~v~~~~~~~~---~~~~~~~~~l~l~~~~~~--~~---~~l~~l--~~~~~~~L~~L~l~~~~~l~~~ 100 (276)
+.|...++..+ .+.......+ ....+.++.++++.+... .. ..+..+ .+..+++|++|+++++ .+++.
T Consensus 32 ~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~ 109 (386)
T 2ca6_A 32 DSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPT 109 (386)
T ss_dssp SCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCCTT
T ss_pred CCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCCHH
Confidence 44454444443 3333323222 345677888988876322 11 122111 1257889999999984 67775
Q ss_pred HHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhC------------CCCCeEeccCCCCcCHHHHHHHH---HhC
Q 023841 101 HLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC------------PELKVFSIYWNVRVTDIGIQHLV---KNC 165 (276)
Q Consensus 101 ~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~------------~~L~~L~L~~~~~l~~~~l~~l~---~~~ 165 (276)
+...+.... ..+++|++|++++| .+++.+...++..+ ++|++|++++| .+++.++..++ ..+
T Consensus 110 ~~~~l~~~l-~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 110 AQEPLIDFL-SKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSH 186 (386)
T ss_dssp THHHHHHHH-HHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHC
T ss_pred HHHHHHHHH-HhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHHHhC
Confidence 555444332 22488999999995 77776665555432 89999999987 67766666443 378
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHh----cCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccC
Q 023841 166 KHIIDLNLSGCKNLLDKSLQLIAD----NYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSN 241 (276)
Q Consensus 166 ~~L~~L~l~~c~~ltd~~~~~l~~----~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~ 241 (276)
++|++|++++| .+++.++..+.. .+++|+.|++++| .+++.+...+.. .+..++.|+.++++++.
T Consensus 187 ~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~---------~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 187 RLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAI---------ALKSWPNLRELGLNDCL 255 (386)
T ss_dssp TTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHH---------HGGGCTTCCEEECTTCC
T ss_pred CCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHH---------HHccCCCcCEEECCCCC
Confidence 89999999997 788888766554 6889999999997 688887766532 45677889999998888
Q ss_pred CCCCcceeEEEee---ccCCCCceeeeecce
Q 023841 242 GGDHLAFAYIIET---NTYKHGKEKHIIETI 269 (276)
Q Consensus 242 ~~~~~~~~~~~~~---~~~~~L~~l~~~~~~ 269 (276)
+++. +...+... ..+++|+.|++.+|.
T Consensus 256 i~~~-~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 256 LSAR-GAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp CCHH-HHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred Cchh-hHHHHHHHHhhccCCCeEEEECcCCc
Confidence 7765 33222211 338899999998875
No 14
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.53 E-value=2.8e-13 Score=117.73 Aligned_cols=153 Identities=15% Similarity=0.195 Sum_probs=95.5
Q ss_pred CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841 56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135 (276)
Q Consensus 56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 135 (276)
+..++.++++++... +..+..+. ..+++|++|++++| .+++.+...++.......++|++|++++| .+++.++..+
T Consensus 100 ~~~L~~L~Ls~n~l~-~~~~~~l~-~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l 175 (372)
T 3un9_A 100 RHALDEVNLASCQLD-PAGLRTLL-PVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVL 175 (372)
T ss_dssp SSCEEEEECTTCCCC-HHHHHHTH-HHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHH
T ss_pred CCCceEEEecCCCCC-HHHHHHHH-HHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHH
Confidence 356777777766543 22223332 33456777777774 67777777776655444567777777774 6777666555
Q ss_pred H---hhCCCCCeEeccCCCCcCHHHHHHHH---HhCCCCcEEecCCCCCCCHHHHHHHHh---cCCCccEEecCCCCCCC
Q 023841 136 S---STCPELKVFSIYWNVRVTDIGIQHLV---KNCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRYVNMI 206 (276)
Q Consensus 136 ~---~~~~~L~~L~L~~~~~l~~~~l~~l~---~~~~~L~~L~l~~c~~ltd~~~~~l~~---~~~~L~~L~l~~c~~it 206 (276)
+ ..+++|++|+|++| .+++.++..++ ..+++|++|++++| .+++.+...++. .+++|++|++++| .++
T Consensus 176 ~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~ 252 (372)
T 3un9_A 176 MEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN-ELS 252 (372)
T ss_dssp HHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTS-SCC
T ss_pred HHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCC-CCC
Confidence 4 34667777777766 57776665554 24457777777775 677766665544 3567777777776 577
Q ss_pred HHHHHHHHh
Q 023841 207 LLGLFYIWS 215 (276)
Q Consensus 207 ~~~l~~l~~ 215 (276)
+.+...+..
T Consensus 253 ~~g~~~L~~ 261 (372)
T 3un9_A 253 SEGRQVLRD 261 (372)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777666543
No 15
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.46 E-value=6.3e-13 Score=115.04 Aligned_cols=198 Identities=14% Similarity=0.064 Sum_probs=114.6
Q ss_pred CCCccEEecCCccCcch--hhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHH
Q 023841 56 PSLWLVIDLREMNNAGN--RLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIE 133 (276)
Q Consensus 56 ~~~~~~l~l~~~~~~~~--~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 133 (276)
+..++.++++++..... ..+.......+++|++|+++++ .+++.....+...+....++|++|++++| .+++.+..
T Consensus 50 ~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~ 127 (362)
T 3goz_A 50 PASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSS 127 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHH
T ss_pred CCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHH
Confidence 33677777777654331 2222221122377888888774 56655555555543222267788888774 66666655
Q ss_pred HHHhh----CCCCCeEeccCCCCcCHHHHHHHH---HhCC-CCcEEecCCCCCCCHHHHHHHH---hcC-CCccEEecCC
Q 023841 134 IISST----CPELKVFSIYWNVRVTDIGIQHLV---KNCK-HIIDLNLSGCKNLLDKSLQLIA---DNY-QELESLNLTR 201 (276)
Q Consensus 134 ~l~~~----~~~L~~L~L~~~~~l~~~~l~~l~---~~~~-~L~~L~l~~c~~ltd~~~~~l~---~~~-~~L~~L~l~~ 201 (276)
.++.. +++|++|++++| .+++.+...++ ...+ +|++|++++| .+++.+...+. ..+ ++|++|++++
T Consensus 128 ~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 205 (362)
T 3goz_A 128 EFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSA 205 (362)
T ss_dssp HHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCC
Confidence 55443 457788888776 56654444443 2343 7888888776 55544433332 234 4788888887
Q ss_pred CCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcce---eEEEeeccCCCCceeeeecce
Q 023841 202 YVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAF---AYIIETNTYKHGKEKHIIETI 269 (276)
Q Consensus 202 c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~---~~~~~~~~~~~L~~l~~~~~~ 269 (276)
| .+++.+...+. .......+.|+.++++++.+++. +. .... ..+++|+.|++.+|.
T Consensus 206 N-~i~~~~~~~l~--------~~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~~--~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 206 N-LLGLKSYAELA--------YIFSSIPNHVVSLNLCLNCLHGP-SLENLKLLK--DSLKHLQTVYLDYDI 264 (362)
T ss_dssp S-CGGGSCHHHHH--------HHHHHSCTTCCEEECCSSCCCCC-CHHHHHHTT--TTTTTCSEEEEEHHH
T ss_pred C-CCChhHHHHHH--------HHHhcCCCCceEEECcCCCCCcH-HHHHHHHHH--hcCCCccEEEeccCC
Confidence 6 67776655543 22223345777777777777665 32 2222 566777777777665
No 16
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.38 E-value=1.1e-12 Score=113.57 Aligned_cols=201 Identities=18% Similarity=0.155 Sum_probs=142.0
Q ss_pred HhcCCCCccEEecCCccCcchh--hH-HHhccccCC-CccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCC
Q 023841 52 LVSYPSLWLVIDLREMNNAGNR--LV-AALSIPRYR-HVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKI 127 (276)
Q Consensus 52 ~~~~~~~~~~l~l~~~~~~~~~--~l-~~l~~~~~~-~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l 127 (276)
+...++.++.++++++...... .+ .. +..++ +|++|+++++ .+++.+...+.......+++|++|++++| .+
T Consensus 17 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~--l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l 92 (362)
T 3goz_A 17 FTSIPHGVTSLDLSLNNLYSISTVELIQA--FANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGN-FL 92 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHH--HHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSS-CG
T ss_pred HHhCCCCceEEEccCCCCChHHHHHHHHH--HHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCC-cC
Confidence 4556677999999998754322 11 22 24677 9999999995 78877777777654333489999999996 67
Q ss_pred CHHHHHHHH---hhC-CCCCeEeccCCCCcCHHHHHHHHHh----CCCCcEEecCCCCCCCHHHHHHHHh---cCC-Ccc
Q 023841 128 SDKGIEIIS---STC-PELKVFSIYWNVRVTDIGIQHLVKN----CKHIIDLNLSGCKNLLDKSLQLIAD---NYQ-ELE 195 (276)
Q Consensus 128 ~~~~~~~l~---~~~-~~L~~L~L~~~~~l~~~~l~~l~~~----~~~L~~L~l~~c~~ltd~~~~~l~~---~~~-~L~ 195 (276)
++.+...++ ..+ ++|++|++++| .+++.+...++.. +++|++|++++| .+++.++..+.. ..+ +|+
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~ 170 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVN 170 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCC
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCcccc
Confidence 765554443 334 89999999987 5777666665543 569999999997 788766655543 354 999
Q ss_pred EEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCC-CccceecccccCCCCCcceeEEEee-cc-CCCCceeeeecce
Q 023841 196 SLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGI-RFFQAVQINSSNGGDHLAFAYIIET-NT-YKHGKEKHIIETI 269 (276)
Q Consensus 196 ~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~-~~-~~~L~~l~~~~~~ 269 (276)
+|++++| .+++.+...++. .+..+ +.|+.++++++.+++. +...+... .. +++|++|++.++.
T Consensus 171 ~L~Ls~n-~l~~~~~~~l~~---------~l~~~~~~L~~L~Ls~N~i~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 171 SLNLRGN-NLASKNCAELAK---------FLASIPASVTSLDLSANLLGLK-SYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp EEECTTS-CGGGSCHHHHHH---------HHHTSCTTCCEEECTTSCGGGS-CHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred EeeecCC-CCchhhHHHHHH---------HHHhCCCCCCEEECCCCCCChh-HHHHHHHHHhcCCCCceEEECcCCC
Confidence 9999998 788877665531 33445 5899999999998775 33322210 22 5699999999874
No 17
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.36 E-value=3.7e-11 Score=94.05 Aligned_cols=124 Identities=16% Similarity=0.105 Sum_probs=105.1
Q ss_pred ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHh---hCCCCCeEeccCCCCcCHHH
Q 023841 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIYWNVRVTDIG 157 (276)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~~L~~L~L~~~~~l~~~~ 157 (276)
..+++|++|+++++..+++.+...++..... .++|++|++++| .+++.+...++. ..+.|++|+|++| .+++.+
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~-~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g 109 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKT-NTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSG 109 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTT-CCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHh-CCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHH
Confidence 6789999999998658999999999987743 589999999995 899999877765 4578999999987 899999
Q ss_pred HHHHHHh---CCCCcEEec--CCCCCCCHHHHHHHHh---cCCCccEEecCCCCCCCHHH
Q 023841 158 IQHLVKN---CKHIIDLNL--SGCKNLLDKSLQLIAD---NYQELESLNLTRYVNMILLG 209 (276)
Q Consensus 158 l~~l~~~---~~~L~~L~l--~~c~~ltd~~~~~l~~---~~~~L~~L~l~~c~~it~~~ 209 (276)
+..++.. ++.|++|++ +++ .+++++...++. ..++|++|++++| .+++.+
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n-~i~~~~ 167 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFT-QQGPRL 167 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCS-SHHHHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCC-CCChHH
Confidence 8888754 568999999 664 899999777665 4789999999997 788876
No 18
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.25 E-value=1.4e-10 Score=90.69 Aligned_cols=122 Identities=17% Similarity=0.117 Sum_probs=99.8
Q ss_pred CCCCccEEecCCCCCCCHHHHHHHHh---hCCCCCeEeccCCCCcCHHHHHHHHH---hCCCCcEEecCCCCCCCHHHHH
Q 023841 112 SLQDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIYWNVRVTDIGIQHLVK---NCKHIIDLNLSGCKNLLDKSLQ 185 (276)
Q Consensus 112 ~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~~L~~L~L~~~~~l~~~~l~~l~~---~~~~L~~L~l~~c~~ltd~~~~ 185 (276)
..++|++|++++|..+++.++..++. .+++|++|+|++| .+++++...++. ..+.|++|++++| .+++.|+.
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~ 111 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGIL 111 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHH
Confidence 35899999999954899999887765 3678999999998 799999877754 4579999999997 89999998
Q ss_pred HHHh---cCCCccEEec--CCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCC
Q 023841 186 LIAD---NYQELESLNL--TRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDH 245 (276)
Q Consensus 186 ~l~~---~~~~L~~L~l--~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~ 245 (276)
.++. ..++|++|++ +++ .++++|...++. .....+.|+.++++++.+++.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~---------~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIAN---------MLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHH---------HHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHH---------HHHhCCCcCEEeccCCCCChH
Confidence 8876 4678999999 776 899999888753 344567788999988876554
No 19
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.01 E-value=1.1e-10 Score=92.11 Aligned_cols=60 Identities=20% Similarity=0.260 Sum_probs=24.7
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCC
Q 023841 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGC 176 (276)
Q Consensus 113 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c 176 (276)
+++|++|+++++ .+++.....+. .+++|+.|+++++ .+++.....+. .+++|++|++++|
T Consensus 87 l~~L~~L~l~~n-~l~~~~~~~l~-~l~~L~~L~Ls~n-~i~~~~~~~l~-~l~~L~~L~L~~n 146 (197)
T 4ezg_A 87 LSNLERLRIMGK-DVTSDKIPNLS-GLTSLTLLDISHS-AHDDSILTKIN-TLPKVNSIDLSYN 146 (197)
T ss_dssp CTTCCEEEEECT-TCBGGGSCCCT-TCTTCCEEECCSS-BCBGGGHHHHT-TCSSCCEEECCSC
T ss_pred CCCCCEEEeECC-ccCcccChhhc-CCCCCCEEEecCC-ccCcHhHHHHh-hCCCCCEEEccCC
Confidence 345555555552 34332222222 2444444444443 33333333332 3444444444444
No 20
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.00 E-value=2.4e-09 Score=92.42 Aligned_cols=151 Identities=15% Similarity=0.146 Sum_probs=100.0
Q ss_pred HhcCCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCC--CCH
Q 023841 52 LVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQK--ISD 129 (276)
Q Consensus 52 ~~~~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~--l~~ 129 (276)
+...++.+++|.+.++.... +.. -..++|++|++..| .+++..+..+... .+|+|++|+++.+.+ ..+
T Consensus 167 ll~~~P~L~~L~L~g~~~l~---l~~---~~~~~L~~L~L~~~-~l~~~~l~~l~~~---~lp~L~~L~L~~~~~~~~~~ 236 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLS---IGK---KPRPNLKSLEIISG-GLPDSVVEDILGS---DLPNLEKLVLYVGVEDYGFD 236 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCB---CCS---CBCTTCSEEEEECS-BCCHHHHHHHHHS---BCTTCCEEEEECBCGGGTCC
T ss_pred HHhcCCCCcEEEEeCCCCce---ecc---ccCCCCcEEEEecC-CCChHHHHHHHHc---cCCCCcEEEEeccccccccc
Confidence 34555677777776542111 111 13678888888864 6788888877652 258888888853211 111
Q ss_pred H---HHHHHH--hhCCCCCeEeccCCCCcCHHHHHHHHH--hCCCCcEEecCCCCCCCHHHHHHHHh---cCCCccEEec
Q 023841 130 K---GIEIIS--STCPELKVFSIYWNVRVTDIGIQHLVK--NCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNL 199 (276)
Q Consensus 130 ~---~~~~l~--~~~~~L~~L~L~~~~~l~~~~l~~l~~--~~~~L~~L~l~~c~~ltd~~~~~l~~---~~~~L~~L~l 199 (276)
. ++..+. ..+|+|+.|+|.+| .+++.+...++. .+++|++|+++.+ .+++.+...+.. ++++|++|++
T Consensus 237 ~~~~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 237 GDMNVFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp SCGGGTGGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred hhHHHHHHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEEC
Confidence 1 122221 24788999999877 677766666654 4678999999874 788888877764 4788999999
Q ss_pred CCCCCCCHHHHHHHHh
Q 023841 200 TRYVNMILLGLFYIWS 215 (276)
Q Consensus 200 ~~c~~it~~~l~~l~~ 215 (276)
++| .++++++..+..
T Consensus 315 ~~n-~i~d~~~~~l~~ 329 (362)
T 2ra8_A 315 KYN-YLSDEMKKELQK 329 (362)
T ss_dssp CSB-BCCHHHHHHHHH
T ss_pred CCC-cCCHHHHHHHHH
Confidence 887 688888887764
No 21
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.99 E-value=6.4e-11 Score=102.24 Aligned_cols=120 Identities=15% Similarity=0.210 Sum_probs=61.1
Q ss_pred CCccEEecCCCCCCCHHHHHHHHh-hCCCCCeEeccCCCC--cCHHHH---HHHH--HhCCCCcEEecCCCCCCCHHHHH
Q 023841 114 QDLESLNLNGCQKISDKGIEIISS-TCPELKVFSIYWNVR--VTDIGI---QHLV--KNCKHIIDLNLSGCKNLLDKSLQ 185 (276)
Q Consensus 114 ~~L~~L~l~~c~~l~~~~~~~l~~-~~~~L~~L~L~~~~~--l~~~~l---~~l~--~~~~~L~~L~l~~c~~ltd~~~~ 185 (276)
++|++|++..| .+++.++..++. .+|+|++|+|+.+.+ ..+.++ ..+. ..+|+|++|++++| .+++.+..
T Consensus 193 ~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~ 270 (362)
T 2ra8_A 193 PNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA-EEQNVVVE 270 (362)
T ss_dssp TTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC-TTHHHHHH
T ss_pred CCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC-CCchHHHH
Confidence 56666666653 566666665553 466666666542110 011111 1111 23566666666664 55555555
Q ss_pred HHHh--cCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCC
Q 023841 186 LIAD--NYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDH 245 (276)
Q Consensus 186 ~l~~--~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~ 245 (276)
.++. .+|+|++|+|+.+ .+++.|...+.. ....++.|+.+++..+.+++.
T Consensus 271 ~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~---------~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 271 MFLESDILPQLETMDISAG-VLTDEGARLLLD---------HVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp HHHHCSSGGGCSEEECCSS-CCBHHHHHHHHT---------THHHHTTCSEEECCSBBCCHH
T ss_pred HHHhCccCCCCCEEECCCC-CCChHHHHHHHh---------hcccCCcceEEECCCCcCCHH
Confidence 5543 3556666666654 566666555431 112345566666655555544
No 22
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.97 E-value=2.6e-09 Score=91.39 Aligned_cols=125 Identities=18% Similarity=0.247 Sum_probs=73.2
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCC
Q 023841 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ 192 (276)
Q Consensus 113 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~ 192 (276)
+++|++|++++| .+++... ...+++|++|+++++ .+++- .. ...+++|+.|++++| .+++- . ....++
T Consensus 220 ~~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~--~~-~~~l~~L~~L~l~~n-~l~~~--~-~~~~l~ 287 (347)
T 4fmz_A 220 MTRLNSLKIGNN-KITDLSP---LANLSQLTWLEIGTN-QISDI--NA-VKDLTKLKMLNVGSN-QISDI--S-VLNNLS 287 (347)
T ss_dssp CTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECCSS-CCCCC--G-GGGGCT
T ss_pred CCcCCEEEccCC-ccCCCcc---hhcCCCCCEEECCCC-ccCCC--hh-HhcCCCcCEEEccCC-ccCCC--h-hhcCCC
Confidence 356666666664 3433221 334666666666665 33331 11 235666777777665 34332 1 123466
Q ss_pred CccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841 193 ELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 269 (276)
Q Consensus 193 ~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 269 (276)
+|+.|++++| .+++.... .+.+++.|+.++++++.+.+... . ..+++|+.|++.++.
T Consensus 288 ~L~~L~L~~n-~l~~~~~~-------------~l~~l~~L~~L~L~~n~l~~~~~----~--~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 288 QLNSLFLNNN-QLGNEDME-------------VIGGLTNLTTLFLSQNHITDIRP----L--ASLSKMDSADFANQV 344 (347)
T ss_dssp TCSEEECCSS-CCCGGGHH-------------HHHTCTTCSEEECCSSSCCCCGG----G--GGCTTCSEESSSCC-
T ss_pred CCCEEECcCC-cCCCcChh-------------HhhccccCCEEEccCCccccccC----h--hhhhccceeehhhhc
Confidence 7777777776 45543322 34567888899998888776633 2 678899999888765
No 23
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.95 E-value=3e-10 Score=89.59 Aligned_cols=154 Identities=16% Similarity=0.156 Sum_probs=107.9
Q ss_pred cCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHH
Q 023841 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 161 (276)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l 161 (276)
.+++|++|+++++ .+++-. .+ . .+++|++|++++| .+++. ..+ ..+++|++|+++++ .+++.....+
T Consensus 42 ~l~~L~~L~l~~n-~i~~l~--~l-~----~l~~L~~L~l~~n-~~~~~--~~l-~~l~~L~~L~l~~n-~l~~~~~~~l 108 (197)
T 4ezg_A 42 QMNSLTYITLANI-NVTDLT--GI-E----YAHNIKDLTINNI-HATNY--NPI-SGLSNLERLRIMGK-DVTSDKIPNL 108 (197)
T ss_dssp HHHTCCEEEEESS-CCSCCT--TG-G----GCTTCSEEEEESC-CCSCC--GGG-TTCTTCCEEEEECT-TCBGGGSCCC
T ss_pred hcCCccEEeccCC-CccChH--HH-h----cCCCCCEEEccCC-CCCcc--hhh-hcCCCCCEEEeECC-ccCcccChhh
Confidence 4567788888774 443211 11 1 2488999999886 55543 223 34899999999987 6765544444
Q ss_pred HHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccC
Q 023841 162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSN 241 (276)
Q Consensus 162 ~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~ 241 (276)
. .+++|++|++++| .+++.....+. .+++|+.|++++|..+++.. .+.+++.|+.++++++.
T Consensus 109 ~-~l~~L~~L~Ls~n-~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~---------------~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 109 S-GLTSLTLLDISHS-AHDDSILTKIN-TLPKVNSIDLSYNGAITDIM---------------PLKTLPELKSLNIQFDG 170 (197)
T ss_dssp T-TCTTCCEEECCSS-BCBGGGHHHHT-TCSSCCEEECCSCTBCCCCG---------------GGGGCSSCCEEECTTBC
T ss_pred c-CCCCCCEEEecCC-ccCcHhHHHHh-hCCCCCEEEccCCCCccccH---------------hhcCCCCCCEEECCCCC
Confidence 4 7899999999997 77776666555 58999999999984365521 35678999999999999
Q ss_pred CCCCcceeEEEeeccCCCCceeeeecceeccc
Q 023841 242 GGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ 273 (276)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 273 (276)
+.+... + ..+++|+.|++.+.. ||+
T Consensus 171 i~~~~~----l--~~l~~L~~L~l~~N~-i~~ 195 (197)
T 4ezg_A 171 VHDYRG----I--EDFPKLNQLYAFSQT-IGG 195 (197)
T ss_dssp CCCCTT----G--GGCSSCCEEEECBC-----
T ss_pred CcChHH----h--ccCCCCCEEEeeCcc-cCC
Confidence 887632 2 678999999998643 443
No 24
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.94 E-value=3.7e-08 Score=77.03 Aligned_cols=130 Identities=15% Similarity=0.214 Sum_probs=104.0
Q ss_pred hhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHh---hCCCCCeEeccC
Q 023841 73 RLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIYW 149 (276)
Q Consensus 73 ~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~~L~~L~L~~ 149 (276)
..+..+. ...+.|++|+++++..+.+.+...|++... ....|+.|++++| .+.|.+..+++. .-+.|++|+|++
T Consensus 31 ~~l~~ll-~~n~~L~~L~L~~nn~igd~ga~~la~aL~-~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~ 107 (197)
T 1pgv_A 31 SCINRLR-EDDTDLKEVNINNMKRVSKERIRSLIEAAC-NSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVES 107 (197)
T ss_dssp HHHHHHH-TTCSSCCEEECTTCCSSCHHHHHHHHHHHT-TCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHH-hcCCCccEEECCCCCCCCHHHHHHHHHHHh-hCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCC
Confidence 3444443 678899999999855899999999999885 4588999999995 999999777765 346799999998
Q ss_pred CCCcCHHHHHHHHHhC---CCCcEEecCCCC--CCCHHHHHHHHh---cCCCccEEecCCCCCCCH
Q 023841 150 NVRVTDIGIQHLVKNC---KHIIDLNLSGCK--NLLDKSLQLIAD---NYQELESLNLTRYVNMIL 207 (276)
Q Consensus 150 ~~~l~~~~l~~l~~~~---~~L~~L~l~~c~--~ltd~~~~~l~~---~~~~L~~L~l~~c~~it~ 207 (276)
+ .|++.+...++..+ +.|++|+++++. .+++.+...++. .-+.|+.|+++++ .+..
T Consensus 108 N-~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~-~~g~ 171 (197)
T 1pgv_A 108 N-FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA-SMEA 171 (197)
T ss_dssp S-BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC-CHHH
T ss_pred C-cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC-CccH
Confidence 7 89999999998765 479999999753 678887666554 5788999999875 4443
No 25
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.93 E-value=2.1e-09 Score=90.74 Aligned_cols=148 Identities=14% Similarity=0.190 Sum_probs=80.1
Q ss_pred ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (276)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~ 160 (276)
..+++|++|+++++ .+++. .. ...+++|++|+++++ .+++.. . ...+++|++|+++++ .++.-. .
T Consensus 82 ~~l~~L~~L~L~~n-~l~~~--~~-----~~~l~~L~~L~l~~n-~l~~~~--~-l~~l~~L~~L~l~~n-~l~~~~--~ 146 (308)
T 1h6u_A 82 KNLTKITELELSGN-PLKNV--SA-----IAGLQSIKTLDLTST-QITDVT--P-LAGLSNLQVLYLDLN-QITNIS--P 146 (308)
T ss_dssp TTCCSCCEEECCSC-CCSCC--GG-----GTTCTTCCEEECTTS-CCCCCG--G-GTTCTTCCEEECCSS-CCCCCG--G
T ss_pred ccCCCCCEEEccCC-cCCCc--hh-----hcCCCCCCEEECCCC-CCCCch--h-hcCCCCCCEEECCCC-ccCcCc--c
Confidence 45556666666653 23221 01 123456666666663 444321 1 234566666666654 333211 1
Q ss_pred HHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceeccccc
Q 023841 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSS 240 (276)
Q Consensus 161 l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~ 240 (276)
...+++|++|++++| .+++-.. ...+++|+.|+++++ .+++.. ....++.|+.++++.+
T Consensus 147 -l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n-~l~~~~---------------~l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 147 -LAGLTNLQYLSIGNA-QVSDLTP---LANLSKLTTLKADDN-KISDIS---------------PLASLPNLIEVHLKNN 205 (308)
T ss_dssp -GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCG---------------GGGGCTTCCEEECTTS
T ss_pred -ccCCCCccEEEccCC-cCCCChh---hcCCCCCCEEECCCC-ccCcCh---------------hhcCCCCCCEEEccCC
Confidence 235566666666665 3332111 234666666666665 443311 1456778888888888
Q ss_pred CCCCCcceeEEEeeccCCCCceeeeeccee
Q 023841 241 NGGDHLAFAYIIETNTYKHGKEKHIIETIK 270 (276)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~ 270 (276)
.+.+... + ..+++|+.|++.++.-
T Consensus 206 ~l~~~~~----l--~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 206 QISDVSP----L--ANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CCCBCGG----G--TTCTTCCEEEEEEEEE
T ss_pred ccCcccc----c--cCCCCCCEEEccCCee
Confidence 8766532 2 6788999998887763
No 26
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.85 E-value=1.6e-10 Score=96.36 Aligned_cols=185 Identities=10% Similarity=0.089 Sum_probs=99.5
Q ss_pred CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841 56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135 (276)
Q Consensus 56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 135 (276)
.+.++.++++++...... .-.+..+++|++|+++++..++...... ...+++|++|+++++ .++..... .
T Consensus 55 ~~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~~l~~~~~~~-----~~~l~~L~~L~l~~n-~l~~~~~~-~ 124 (285)
T 1ozn_A 55 CRNLTILWLHSNVLARID---AAAFTGLALLEQLDLSDNAQLRSVDPAT-----FHGLGRLHTLHLDRC-GLQELGPG-L 124 (285)
T ss_dssp CTTCCEEECCSSCCCEEC---TTTTTTCTTCCEEECCSCTTCCCCCTTT-----TTTCTTCCEEECTTS-CCCCCCTT-T
T ss_pred CCCCCEEECCCCccceeC---HhhcCCccCCCEEeCCCCCCccccCHHH-----hcCCcCCCEEECCCC-cCCEECHh-H
Confidence 445666666665433211 0112456777777777653232211111 123467777777774 44432111 1
Q ss_pred HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHh
Q 023841 136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWS 215 (276)
Q Consensus 136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~ 215 (276)
...+++|++|+++++ .++...... ...+++|++|+++++ .+++-.... ...+++|+.|+++++ .+++..
T Consensus 125 ~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~------ 193 (285)
T 1ozn_A 125 FRGLAALQYLYLQDN-ALQALPDDT-FRDLGNLTHLFLHGN-RISSVPERA-FRGLHSLDRLLLHQN-RVAHVH------ 193 (285)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCCEEC------
T ss_pred hhCCcCCCEEECCCC-cccccCHhH-hccCCCccEEECCCC-cccccCHHH-hcCccccCEEECCCC-cccccC------
Confidence 234677777777765 333211111 235677777777775 444211111 224677777777776 444321
Q ss_pred cCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecceecc
Q 023841 216 NNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTG 272 (276)
Q Consensus 216 ~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 272 (276)
...+..++.|+.++++.+.+.+. .. ..+ ..+++|+.|++.+++-..
T Consensus 194 -------~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~--~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 194 -------PHAFRDLGRLMTLYLFANNLSAL-PT-EAL--APLRALQYLRLNDNPWVC 239 (285)
T ss_dssp -------TTTTTTCTTCCEEECCSSCCSCC-CH-HHH--TTCTTCCEEECCSSCEEC
T ss_pred -------HhHccCcccccEeeCCCCcCCcC-CH-HHc--ccCcccCEEeccCCCccC
Confidence 11345677888888888877654 21 122 578899999988876554
No 27
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.84 E-value=3.4e-10 Score=95.70 Aligned_cols=186 Identities=10% Similarity=-0.008 Sum_probs=102.3
Q ss_pred CccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHH--HHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841 58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRH--LELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135 (276)
Q Consensus 58 ~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~--~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 135 (276)
.++.++++++........ .+....+++|++|+++++ .++... +.... . ..+++|++|+++++ .++......+
T Consensus 92 ~L~~L~l~~n~l~~~~~~-~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~--~-~~~~~L~~L~Ls~n-~l~~~~~~~~ 165 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPP-LPLEATGLALSSLRLRNV-SWATGRSWLAELQ--Q-WLKPGLKVLSIAQA-HSPAFSCEQV 165 (310)
T ss_dssp CCCEEEEESCCCBSCCCC-CSSSCCCBCCSSCEEESC-CCSSTTSSHHHHH--T-TBCSCCCEEEEECC-SSCCCCTTSC
T ss_pred ceeEEEeeCCEeccchhh-hhhhccCCCCCEEEeecc-cccchhhhhHHHH--h-hhccCCCEEEeeCC-CcchhhHHHh
Confidence 477777776654321110 010045778888888874 444311 01111 0 13578888888884 5543221122
Q ss_pred HhhCCCCCeEeccCCCCcCHHHHHH--HHHhCCCCcEEecCCCCCCC--HHHHHHHHhcCCCccEEecCCCCCCCHHHHH
Q 023841 136 SSTCPELKVFSIYWNVRVTDIGIQH--LVKNCKHIIDLNLSGCKNLL--DKSLQLIADNYQELESLNLTRYVNMILLGLF 211 (276)
Q Consensus 136 ~~~~~~L~~L~L~~~~~l~~~~l~~--l~~~~~~L~~L~l~~c~~lt--d~~~~~l~~~~~~L~~L~l~~c~~it~~~l~ 211 (276)
..+++|++|+++++.-.++.++.. ....+++|++|++++| .++ ......+...+++|++|+++++ .+++..-.
T Consensus 166 -~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~ 242 (310)
T 4glp_A 166 -RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNP 242 (310)
T ss_dssp -CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCS
T ss_pred -ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCC-CCCccchh
Confidence 247788888888763233333321 1236778888888886 555 3333334556788888888886 45432100
Q ss_pred HHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841 212 YIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 269 (276)
Q Consensus 212 ~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 269 (276)
.+ ....+++.|+.++++++.+... +- ..+++|+.|++..+.
T Consensus 243 ~~----------~~~~~~~~L~~L~Ls~N~l~~l-p~------~~~~~L~~L~Ls~N~ 283 (310)
T 4glp_A 243 SA----------PRCMWSSALNSLNLSFAGLEQV-PK------GLPAKLRVLDLSSNR 283 (310)
T ss_dssp CC----------SSCCCCTTCCCEECCSSCCCSC-CS------CCCSCCSCEECCSCC
T ss_pred hH----------HhccCcCcCCEEECCCCCCCch-hh------hhcCCCCEEECCCCc
Confidence 00 0122336888888888877632 11 123788888887764
No 28
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.83 E-value=1.2e-08 Score=85.48 Aligned_cols=165 Identities=18% Similarity=0.167 Sum_probs=107.1
Q ss_pred CccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHh
Q 023841 58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS 137 (276)
Q Consensus 58 ~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 137 (276)
.++.++++++....... +..+++|++|+++++ .+++..- ...+++|+.|+++++ .+++. .. ..
T Consensus 47 ~L~~L~l~~~~i~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~-------l~~l~~L~~L~l~~n-~l~~~--~~-l~ 109 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQG-----IQYLPNVTKLFLNGN-KLTDIKP-------LANLKNLGWLFLDEN-KVKDL--SS-LK 109 (291)
T ss_dssp TCCEEECTTSCCCCCTT-----GGGCTTCCEEECCSS-CCCCCGG-------GTTCTTCCEEECCSS-CCCCG--GG-GT
T ss_pred cccEEEccCCCcccChh-----HhcCCCCCEEEccCC-ccCCCcc-------cccCCCCCEEECCCC-cCCCC--hh-hc
Confidence 46777877765443221 356888999999885 4443211 134588999999885 56552 22 34
Q ss_pred hCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcC
Q 023841 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNN 217 (276)
Q Consensus 138 ~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~ 217 (276)
.+++|++|+++++ .+++ +..+ ..+++|++|++++| .+++- . ....+++|+.|++++| .+++..
T Consensus 110 ~l~~L~~L~L~~n-~i~~--~~~l-~~l~~L~~L~l~~n-~l~~~--~-~l~~l~~L~~L~L~~N-~l~~~~-------- 172 (291)
T 1h6t_A 110 DLKKLKSLSLEHN-GISD--INGL-VHLPQLESLYLGNN-KITDI--T-VLSRLTKLDTLSLEDN-QISDIV-------- 172 (291)
T ss_dssp TCTTCCEEECTTS-CCCC--CGGG-GGCTTCCEEECCSS-CCCCC--G-GGGGCTTCSEEECCSS-CCCCCG--------
T ss_pred cCCCCCEEECCCC-cCCC--Chhh-cCCCCCCEEEccCC-cCCcc--h-hhccCCCCCEEEccCC-ccccch--------
Confidence 5788899998877 4544 2223 36788999998886 45432 2 2335888899998887 555421
Q ss_pred chhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841 218 ILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 269 (276)
Q Consensus 218 ~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 269 (276)
....++.|+.++++++.+.+... + ..+++|+.|++.++.
T Consensus 173 -------~l~~l~~L~~L~L~~N~i~~l~~----l--~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 173 -------PLAGLTKLQNLYLSKNHISDLRA----L--AGLKNLDVLELFSQE 211 (291)
T ss_dssp -------GGTTCTTCCEEECCSSCCCBCGG----G--TTCTTCSEEEEEEEE
T ss_pred -------hhcCCCccCEEECCCCcCCCChh----h--ccCCCCCEEECcCCc
Confidence 14567788888888887765421 2 677888888887764
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.82 E-value=1.1e-08 Score=87.40 Aligned_cols=183 Identities=15% Similarity=0.091 Sum_probs=89.3
Q ss_pred CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841 56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135 (276)
Q Consensus 56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 135 (276)
.+.++.++++++....... +..+++|++|+++++ .+++. .. ...+++|++|+++++ .+++...
T Consensus 65 ~~~L~~L~l~~n~i~~~~~-----~~~l~~L~~L~L~~n-~i~~~--~~-----~~~l~~L~~L~l~~n-~i~~~~~--- 127 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP-----LSNLVKLTNLYIGTN-KITDI--SA-----LQNLTNLRELYLNED-NISDISP--- 127 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSS-CCCCC--GG-----GTTCTTCSEEECTTS-CCCCCGG---
T ss_pred cCCccEEEccCCccccchh-----hhcCCcCCEEEccCC-cccCc--hH-----HcCCCcCCEEECcCC-cccCchh---
Confidence 3445555555543322111 245566666666664 33321 11 123466666666664 4443221
Q ss_pred HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHH-HHHH
Q 023841 136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGL-FYIW 214 (276)
Q Consensus 136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l-~~l~ 214 (276)
...+++|+.|++++|..+++. .. ...+++|++|++++|. +++... ...+++|+.|++++| .+++... ..+.
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~--~~-~~~l~~L~~L~l~~~~-~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~~~l~ 199 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDL--SP-LSNMTGLNYLTVTESK-VKDVTP---IANLTDLYSLSLNYN-QIEDISPLASLT 199 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCC--GG-GTTCTTCCEEECCSSC-CCCCGG---GGGCTTCSEEECTTS-CCCCCGGGGGCT
T ss_pred hccCCceeEEECCCCCCcccc--cc-hhhCCCCcEEEecCCC-cCCchh---hccCCCCCEEEccCC-cccccccccCCC
Confidence 334666666666665433321 11 2356667777776652 321111 335677777777776 4443211 1000
Q ss_pred h------cCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841 215 S------NNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 269 (276)
Q Consensus 215 ~------~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 269 (276)
. .............++.|+.++++++.+.+... + ..+++|+.|++.++.
T Consensus 200 ~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~----~--~~l~~L~~L~l~~n~ 254 (347)
T 4fmz_A 200 SLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP----L--ANLSQLTWLEIGTNQ 254 (347)
T ss_dssp TCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG----G--TTCTTCCEEECCSSC
T ss_pred ccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc----h--hcCCCCCEEECCCCc
Confidence 0 00000000014566777777777776655422 2 577788888877663
No 30
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.80 E-value=5.7e-10 Score=92.52 Aligned_cols=179 Identities=14% Similarity=0.102 Sum_probs=111.1
Q ss_pred CCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHH
Q 023841 57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS 136 (276)
Q Consensus 57 ~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 136 (276)
..++.+++.++....... +..+++|++|+++++ .+++. .. ...+++|++|+++++ .++...-. ..
T Consensus 41 ~~L~~L~l~~~~i~~~~~-----l~~l~~L~~L~l~~n-~l~~~--~~-----l~~l~~L~~L~L~~n-~l~~~~~~-~~ 105 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQG-----IQYLPNVRYLALGGN-KLHDI--SA-----LKELTNLTYLILTGN-QLQSLPNG-VF 105 (272)
T ss_dssp TTCCEEECTTSCCCCCTT-----GGGCTTCCEEECTTS-CCCCC--GG-----GTTCTTCCEEECTTS-CCCCCCTT-TT
T ss_pred cceeeeeeCCCCcccccc-----cccCCCCcEEECCCC-CCCCc--hh-----hcCCCCCCEEECCCC-ccCccChh-Hh
Confidence 356777777765433221 357889999999985 44431 11 234689999999985 55532211 12
Q ss_pred hhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhc
Q 023841 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSN 216 (276)
Q Consensus 137 ~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~ 216 (276)
..+++|++|+++++ .++... ......+++|++|++++| .++.-.. .....+++|+.|++++| .+++..
T Consensus 106 ~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~------- 173 (272)
T 3rfs_A 106 DKLTNLKELVLVEN-QLQSLP-DGVFDKLTNLTYLNLAHN-QLQSLPK-GVFDKLTNLTELDLSYN-QLQSLP------- 173 (272)
T ss_dssp TTCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-------
T ss_pred cCCcCCCEEECCCC-cCCccC-HHHhccCCCCCEEECCCC-ccCccCH-HHhccCccCCEEECCCC-CcCccC-------
Confidence 34788999999876 454211 111236789999999987 4542111 11235788999999997 555311
Q ss_pred CchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecceecc
Q 023841 217 NILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTG 272 (276)
Q Consensus 217 ~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 272 (276)
...+.+++.|+.+++..+.+..... ..+ ..+++|+.|++.+++-.+
T Consensus 174 ------~~~~~~l~~L~~L~L~~N~l~~~~~--~~~--~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 174 ------EGVFDKLTQLKDLRLYQNQLKSVPD--GVF--DRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp ------TTTTTTCTTCCEEECCSSCCSCCCT--TTT--TTCTTCCEEECCSSCBCC
T ss_pred ------HHHhcCCccCCEEECCCCcCCccCH--HHH--hCCcCCCEEEccCCCccc
Confidence 1134567888888888777664421 112 567888888888766444
No 31
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.79 E-value=3.2e-09 Score=89.77 Aligned_cols=143 Identities=16% Similarity=0.117 Sum_probs=77.1
Q ss_pred CCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHH--HHHHHHHHccCCCCCccEEecCCCCCCCHHHH
Q 023841 55 YPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDR--HLELLKTKCLGSLQDLESLNLNGCQKISDKGI 132 (276)
Q Consensus 55 ~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~--~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~ 132 (276)
..+.++.++++++...+... ..+....+++|++|+++++ .++.. .+..+... ..++|++|+++++ .++....
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~---~~~~L~~L~L~~N-~l~~~~~ 166 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAP-PPLLEATGPDLNILNLRNV-SWATRDAWLAELQQW---LKPGLKVLSIAQA-HSLNFSC 166 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCC-CCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTT---CCTTCCEEEEESC-SCCCCCT
T ss_pred CcCCccEEEccCCcccchhH-HHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHh---hcCCCcEEEeeCC-CCccchH
Confidence 35678888888765442111 1111257788999999884 44432 22233221 1367777777774 4443222
Q ss_pred HHHHhhCCCCCeEeccCCCCcCHH-HH-HHH-HHhCCCCcEEecCCCCCCCH--HHHHHHHhcCCCccEEecCCCCCCCH
Q 023841 133 EIISSTCPELKVFSIYWNVRVTDI-GI-QHL-VKNCKHIIDLNLSGCKNLLD--KSLQLIADNYQELESLNLTRYVNMIL 207 (276)
Q Consensus 133 ~~l~~~~~~L~~L~L~~~~~l~~~-~l-~~l-~~~~~~L~~L~l~~c~~ltd--~~~~~l~~~~~~L~~L~l~~c~~it~ 207 (276)
..+ ..+++|++|+++++. ++.. .+ ..+ ...+++|++|++++| .++. .....+...+++|+.|+++++ .+++
T Consensus 167 ~~~-~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ 242 (312)
T 1wwl_A 167 EQV-RVFPALSTLDLSDNP-ELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHN-SLRD 242 (312)
T ss_dssp TTC-CCCSSCCEEECCSCT-TCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTS-CCCS
T ss_pred HHh-ccCCCCCEEECCCCC-cCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCC-cCCc
Confidence 222 236677777777663 3322 22 122 145677777777775 4542 223344445677777777775 4444
No 32
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.78 E-value=1.4e-08 Score=85.67 Aligned_cols=165 Identities=12% Similarity=0.122 Sum_probs=118.5
Q ss_pred CccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHh
Q 023841 58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS 137 (276)
Q Consensus 58 ~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 137 (276)
.++.++++++...... . +..+++|++|+++++ .+++..- + ..+++|++|+++++ .++.. .. ..
T Consensus 42 ~L~~L~l~~~~i~~l~---~--~~~l~~L~~L~L~~n-~i~~~~~--~-----~~l~~L~~L~L~~n-~l~~~--~~-~~ 104 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIE---G--VQYLNNLIGLELKDN-QITDLAP--L-----KNLTKITELELSGN-PLKNV--SA-IA 104 (308)
T ss_dssp TCCEEECTTSCCCCCT---T--GGGCTTCCEEECCSS-CCCCCGG--G-----TTCCSCCEEECCSC-CCSCC--GG-GT
T ss_pred CcCEEEeeCCCccCch---h--hhccCCCCEEEccCC-cCCCChh--H-----ccCCCCCEEEccCC-cCCCc--hh-hc
Confidence 5778888877544322 1 357899999999986 4443221 1 34699999999995 56653 22 34
Q ss_pred hCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcC
Q 023841 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNN 217 (276)
Q Consensus 138 ~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~ 217 (276)
.+++|++|+++++ .+++- .. ...+++|++|++++| .+++... ...+++|+.|++++| .+++..
T Consensus 105 ~l~~L~~L~l~~n-~l~~~--~~-l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n-~l~~~~-------- 167 (308)
T 1h6u_A 105 GLQSIKTLDLTST-QITDV--TP-LAGLSNLQVLYLDLN-QITNISP---LAGLTNLQYLSIGNA-QVSDLT-------- 167 (308)
T ss_dssp TCTTCCEEECTTS-CCCCC--GG-GTTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSS-CCCCCG--------
T ss_pred CCCCCCEEECCCC-CCCCc--hh-hcCCCCCCEEECCCC-ccCcCcc---ccCCCCccEEEccCC-cCCCCh--------
Confidence 5899999999987 55542 22 347899999999997 4543221 446899999999998 665421
Q ss_pred chhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841 218 ILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 269 (276)
Q Consensus 218 ~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 269 (276)
.+..++.|+.++++.+.+.+... + ..+++|+.|++.++.
T Consensus 168 -------~l~~l~~L~~L~l~~n~l~~~~~----l--~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 168 -------PLANLSKLTTLKADDNKISDISP----L--ASLPNLIEVHLKNNQ 206 (308)
T ss_dssp -------GGTTCTTCCEEECCSSCCCCCGG----G--GGCTTCCEEECTTSC
T ss_pred -------hhcCCCCCCEEECCCCccCcChh----h--cCCCCCCEEEccCCc
Confidence 15678899999999998876633 3 689999999999875
No 33
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.78 E-value=2.5e-10 Score=95.23 Aligned_cols=182 Identities=13% Similarity=0.057 Sum_probs=114.5
Q ss_pred CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841 56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135 (276)
Q Consensus 56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 135 (276)
++.++.+++++....... .-.+..+++|++|+++++ .++...... ...+++|++|+++++..++......
T Consensus 31 ~~~l~~L~l~~n~i~~~~---~~~~~~~~~L~~L~l~~n-~l~~~~~~~-----~~~l~~L~~L~l~~n~~l~~~~~~~- 100 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVP---AASFRACRNLTILWLHSN-VLARIDAAA-----FTGLALLEQLDLSDNAQLRSVDPAT- 100 (285)
T ss_dssp CTTCSEEECTTSCCCEEC---TTTTTTCTTCCEEECCSS-CCCEECTTT-----TTTCTTCCEEECCSCTTCCCCCTTT-
T ss_pred CCCceEEEeeCCcCCccC---HHHcccCCCCCEEECCCC-ccceeCHhh-----cCCccCCCEEeCCCCCCccccCHHH-
Confidence 456778888876544321 112367889999999985 444321111 1345899999999863244432222
Q ss_pred HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHh
Q 023841 136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWS 215 (276)
Q Consensus 136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~ 215 (276)
...+++|++|+++++ .++..... ....+++|++|+++++ .++..... ....+++|++|+++++ .++...
T Consensus 101 ~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~------ 169 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRC-GLQELGPG-LFRGLAALQYLYLQDN-ALQALPDD-TFRDLGNLTHLFLHGN-RISSVP------ 169 (285)
T ss_dssp TTTCTTCCEEECTTS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCEEC------
T ss_pred hcCCcCCCEEECCCC-cCCEECHh-HhhCCcCCCEEECCCC-cccccCHh-HhccCCCccEEECCCC-cccccC------
Confidence 234789999999986 44432111 2346889999999986 44422111 1235889999999997 565321
Q ss_pred cCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841 216 NNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 269 (276)
Q Consensus 216 ~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 269 (276)
...+.+++.|+.++++++.+.+.. . ..+ ..+++|+.|++.++.
T Consensus 170 -------~~~~~~l~~L~~L~l~~n~l~~~~-~-~~~--~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 170 -------ERAFRGLHSLDRLLLHQNRVAHVH-P-HAF--RDLGRLMTLYLFANN 212 (285)
T ss_dssp -------TTTTTTCTTCCEEECCSSCCCEEC-T-TTT--TTCTTCCEEECCSSC
T ss_pred -------HHHhcCccccCEEECCCCcccccC-H-hHc--cCcccccEeeCCCCc
Confidence 113566889999999888765431 1 122 578999999998874
No 34
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.78 E-value=1e-08 Score=94.35 Aligned_cols=167 Identities=19% Similarity=0.162 Sum_probs=101.1
Q ss_pred CccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHh
Q 023841 58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS 137 (276)
Q Consensus 58 ~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 137 (276)
.++.|+++.+...... .+..+++|+.|+++++ .+++..- + ..+++|+.|+++++ .++.. .. ..
T Consensus 44 ~L~~L~l~~n~i~~l~-----~l~~l~~L~~L~Ls~N-~l~~~~~--l-----~~l~~L~~L~Ls~N-~l~~l--~~-l~ 106 (605)
T 1m9s_A 44 SIDQIIANNSDIKSVQ-----GIQYLPNVTKLFLNGN-KLTDIKP--L-----TNLKNLGWLFLDEN-KIKDL--SS-LK 106 (605)
T ss_dssp TCCCCBCTTCCCCCCT-----TGGGCTTCCEEECTTS-CCCCCGG--G-----GGCTTCCEEECCSS-CCCCC--TT-ST
T ss_pred CCCEEECcCCCCCCCh-----HHccCCCCCEEEeeCC-CCCCChh--h-----ccCCCCCEEECcCC-CCCCC--hh-hc
Confidence 4555666665433221 1356788888888875 3332111 1 23578888888885 55542 12 23
Q ss_pred hCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcC
Q 023841 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNN 217 (276)
Q Consensus 138 ~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~ 217 (276)
.+++|+.|+|+++ .+++ +..+ ..+++|+.|++++| .+++. .....+++|+.|+|++| .+++..
T Consensus 107 ~l~~L~~L~Ls~N-~l~~--l~~l-~~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N-~l~~~~-------- 169 (605)
T 1m9s_A 107 DLKKLKSLSLEHN-GISD--INGL-VHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDN-QISDIV-------- 169 (605)
T ss_dssp TCTTCCEEECTTS-CCCC--CGGG-GGCTTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSS-CCCCCG--------
T ss_pred cCCCCCEEEecCC-CCCC--Cccc-cCCCccCEEECCCC-ccCCc---hhhcccCCCCEEECcCC-cCCCch--------
Confidence 4778888888876 4443 2223 36788888888886 45432 22335788888888886 454321
Q ss_pred chhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecceec
Q 023841 218 ILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKT 271 (276)
Q Consensus 218 ~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~ 271 (276)
.+..++.|+.|+++.+.+.+... + ..+++|+.|++.++.-.
T Consensus 170 -------~l~~l~~L~~L~Ls~N~i~~l~~----l--~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 170 -------PLAGLTKLQNLYLSKNHISDLRA----L--AGLKNLDVLELFSQECL 210 (605)
T ss_dssp -------GGTTCTTCCEEECCSSCCCBCGG----G--TTCTTCSEEECCSEEEE
T ss_pred -------hhccCCCCCEEECcCCCCCCChH----H--ccCCCCCEEEccCCcCc
Confidence 14567778888887777655411 2 56778888888776543
No 35
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.77 E-value=9.9e-10 Score=90.92 Aligned_cols=182 Identities=14% Similarity=0.126 Sum_probs=105.4
Q ss_pred CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841 56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135 (276)
Q Consensus 56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 135 (276)
++.++.+++++....... .-.+..+++|++|+++++ .++. +.......+++|++|+++++ .++..... .
T Consensus 36 ~~~l~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n-~l~~-----i~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~ 104 (270)
T 2o6q_A 36 PADTKKLDLQSNKLSSLP---SKAFHRLTKLRLLYLNDN-KLQT-----LPAGIFKELKNLETLWVTDN-KLQALPIG-V 104 (270)
T ss_dssp CTTCSEEECCSSCCSCCC---TTSSSSCTTCCEEECCSS-CCSC-----CCTTTTSSCTTCCEEECCSS-CCCCCCTT-T
T ss_pred CCCCCEEECcCCCCCeeC---HHHhcCCCCCCEEECCCC-ccCe-----eChhhhcCCCCCCEEECCCC-cCCcCCHh-H
Confidence 345667777765433211 112356788888888874 3331 11111134588888888884 55432221 2
Q ss_pred HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHh
Q 023841 136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWS 215 (276)
Q Consensus 136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~ 215 (276)
...+++|++|+++++ .++...... ...+++|++|+++++ .++.-.. .....+++|+.|+++++ .++...
T Consensus 105 ~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~------ 173 (270)
T 2o6q_A 105 FDQLVNLAELRLDRN-QLKSLPPRV-FDSLTKLTYLSLGYN-ELQSLPK-GVFDKLTSLKELRLYNN-QLKRVP------ 173 (270)
T ss_dssp TTTCSSCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCSCCC------
T ss_pred cccccCCCEEECCCC-ccCeeCHHH-hCcCcCCCEEECCCC-cCCccCH-hHccCCcccceeEecCC-cCcEeC------
Confidence 234788888888875 343221111 236788888888886 4442111 11235788888888886 454311
Q ss_pred cCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeeccee
Q 023841 216 NNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK 270 (276)
Q Consensus 216 ~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~ 270 (276)
...+.+++.|+.++++.+.+... .. ..+ ..+++|+.|.+.+++-
T Consensus 174 -------~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~--~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 174 -------EGAFDKLTELKTLKLDNNQLKRV-PE-GAF--DSLEKLKMLQLQENPW 217 (270)
T ss_dssp -------TTTTTTCTTCCEEECCSSCCSCC-CT-TTT--TTCTTCCEEECCSSCB
T ss_pred -------hhHhccCCCcCEEECCCCcCCcC-CH-HHh--ccccCCCEEEecCCCe
Confidence 11345677888888877776543 11 112 5678888888877653
No 36
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.73 E-value=3.4e-08 Score=88.05 Aligned_cols=40 Identities=5% Similarity=-0.028 Sum_probs=28.3
Q ss_pred HcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecceec
Q 023841 226 YHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKT 271 (276)
Q Consensus 226 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~ 271 (276)
+..++.|+.++++++.+.+... . ..+++|+.|.+.+|.-.
T Consensus 349 l~~l~~L~~L~l~~n~l~~~~~----~--~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 349 LANLTNINWLSAGHNQISDLTP----L--ANLTRITQLGLNDQAWT 388 (466)
T ss_dssp GTTCTTCCEEECCSSCCCBCGG----G--TTCTTCCEEECCCEEEE
T ss_pred hccCCCCCEEeCCCCccCccch----h--hcCCCCCEEeccCCccc
Confidence 4567788888888777765532 2 67888888888877543
No 37
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.73 E-value=6.5e-09 Score=77.93 Aligned_cols=38 Identities=32% Similarity=0.439 Sum_probs=15.7
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCC
Q 023841 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY 202 (276)
Q Consensus 164 ~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c 202 (276)
.+++|++|++++| .+++.........+++|++|++++|
T Consensus 86 ~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 86 KCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp HCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred hCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC
Confidence 3445555555543 3333211111223445555555554
No 38
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.72 E-value=5.6e-08 Score=72.74 Aligned_cols=135 Identities=16% Similarity=0.261 Sum_probs=93.4
Q ss_pred hcCCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHH
Q 023841 53 VSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGI 132 (276)
Q Consensus 53 ~~~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~ 132 (276)
...++.++.++++++....... .. .+..+++|+.|+++++ .+++. .....+++|+.|+++++ .++.. +
T Consensus 13 ~~~~~~l~~L~l~~n~l~~~~~-~~-~~~~l~~L~~L~l~~n-~l~~~-------~~~~~l~~L~~L~Ls~n-~i~~~-~ 80 (149)
T 2je0_A 13 NRTPSDVKELVLDNSRSNEGKL-EG-LTDEFEELEFLSTINV-GLTSI-------ANLPKLNKLKKLELSDN-RVSGG-L 80 (149)
T ss_dssp TCCGGGCSEEECTTCBCBTTBC-CS-CCTTCTTCCEEECTTS-CCCCC-------TTCCCCTTCCEEECCSS-CCCSC-T
T ss_pred cCCCccCeEEEccCCcCChhHH-HH-HHhhcCCCcEEECcCC-CCCCc-------hhhhcCCCCCEEECCCC-cccch-H
Confidence 3445778999999876541111 11 2367899999999986 55543 12345799999999995 66653 3
Q ss_pred HHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHH--HHHHhcCCCccEEecCC
Q 023841 133 EIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSL--QLIADNYQELESLNLTR 201 (276)
Q Consensus 133 ~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~--~~l~~~~~~L~~L~l~~ 201 (276)
......+++|++|+++++ .+++-........+++|++|++++| .+++... ......+++|+.|+++.
T Consensus 81 ~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 81 EVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HHHhhhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 345556999999999987 5766433233458999999999997 5554322 23445699999999863
No 39
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.72 E-value=4.6e-10 Score=86.10 Aligned_cols=138 Identities=22% Similarity=0.241 Sum_probs=77.0
Q ss_pred ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (276)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~ 160 (276)
...++|++|+++++ .+++..+..... .+++|+.|++++| .++.. .....+++|++|+++++ .++.. +..
T Consensus 21 ~~~~~L~~L~l~~n-~l~~~~i~~~~~----~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~N-~l~~~-~~~ 89 (168)
T 2ell_A 21 RTPAAVRELVLDNC-KSNDGKIEGLTA----EFVNLEFLSLINV-GLISV---SNLPKLPKLKKLELSEN-RIFGG-LDM 89 (168)
T ss_dssp SCTTSCSEEECCSC-BCBTTBCSSCCG----GGGGCCEEEEESS-CCCCC---SSCCCCSSCCEEEEESC-CCCSC-CCH
T ss_pred CCcccCCEEECCCC-CCChhhHHHHHH----hCCCCCEEeCcCC-CCCCh---hhhccCCCCCEEECcCC-cCchH-HHH
Confidence 44577888888875 344211111112 2377888888875 55553 22334677888888776 44432 333
Q ss_pred HHHhCCCCcEEecCCCCCCCHH-HHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccc
Q 023841 161 LVKNCKHIIDLNLSGCKNLLDK-SLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINS 239 (276)
Q Consensus 161 l~~~~~~L~~L~l~~c~~ltd~-~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~ 239 (276)
+...+++|+.|++++| .+++- .+.. ...+++|+.|++++| .++...- .+...+..++.|+.+++..
T Consensus 90 ~~~~l~~L~~L~Ls~N-~l~~~~~~~~-l~~l~~L~~L~l~~N-~l~~~~~----------~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGN-KLKDISTLEP-LKKLECLKSLDLFNC-EVTNLND----------YRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp HHHHCTTCCEEECBSS-SCCSSGGGGG-GSSCSCCCEEECCSS-GGGTSTT----------HHHHHHTTCSSCCEETTEE
T ss_pred HHhhCCCCCEEeccCC-ccCcchhHHH-HhcCCCCCEEEeeCC-cCcchHH----------HHHHHHHhCccCcEecCCC
Confidence 4445778888888776 45442 1222 234777888888776 4433210 0112455666777777655
Q ss_pred cCC
Q 023841 240 SNG 242 (276)
Q Consensus 240 ~~~ 242 (276)
+.+
T Consensus 157 n~~ 159 (168)
T 2ell_A 157 RED 159 (168)
T ss_dssp TTS
T ss_pred CCh
Confidence 554
No 40
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.71 E-value=1.9e-09 Score=91.02 Aligned_cols=184 Identities=13% Similarity=0.020 Sum_probs=118.5
Q ss_pred cCCCCccEEecCCccCcch-hhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCH-HH
Q 023841 54 SYPSLWLVIDLREMNNAGN-RLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISD-KG 131 (276)
Q Consensus 54 ~~~~~~~~l~l~~~~~~~~-~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~-~~ 131 (276)
...+.++.++++++..... ..+.......+++|++|+++++ .++... ......+++|++|+++++ .+.. .+
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~-----~~~~~~l~~L~~L~Ls~N-~l~~~~~ 186 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFS-----CEQVRAFPALTSLDLSDN-PGLGERG 186 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCC-----TTSCCCCTTCCEEECCSC-TTCHHHH
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-Ccchhh-----HHHhccCCCCCEEECCCC-CCccchh
Confidence 3345677788887765432 1122233357899999999985 443211 111235689999999995 5543 33
Q ss_pred HHH--HHhhCCCCCeEeccCCCCcC--HHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHh--cCCCccEEecCCCCCC
Q 023841 132 IEI--ISSTCPELKVFSIYWNVRVT--DIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD--NYQELESLNLTRYVNM 205 (276)
Q Consensus 132 ~~~--l~~~~~~L~~L~L~~~~~l~--~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~--~~~~L~~L~l~~c~~i 205 (276)
+.. ....+++|++|++++| .++ ......+...+++|++|+++++ .+++.....+.. .+++|++|+++++ .+
T Consensus 187 ~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l 263 (310)
T 4glp_A 187 LMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFA-GL 263 (310)
T ss_dssp HHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSS-CC
T ss_pred hhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCC-CC
Confidence 321 1246899999999998 666 3333445568899999999997 554332111121 1379999999997 66
Q ss_pred CHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841 206 ILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 269 (276)
Q Consensus 206 t~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 269 (276)
+. +. . .-++.|+.++++++.+..... . ..+++|+.|++.+.+
T Consensus 264 ~~--lp-------~-------~~~~~L~~L~Ls~N~l~~~~~----~--~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 264 EQ--VP-------K-------GLPAKLRVLDLSSNRLNRAPQ----P--DELPEVDNLTLDGNP 305 (310)
T ss_dssp CS--CC-------S-------CCCSCCSCEECCSCCCCSCCC----T--TSCCCCSCEECSSTT
T ss_pred Cc--hh-------h-------hhcCCCCEEECCCCcCCCCch----h--hhCCCccEEECcCCC
Confidence 52 11 1 113789999999998875311 2 678999999998654
No 41
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.71 E-value=8.1e-10 Score=91.65 Aligned_cols=197 Identities=14% Similarity=0.049 Sum_probs=106.8
Q ss_pred CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841 56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135 (276)
Q Consensus 56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 135 (276)
++.++.++++++....... ..+..+++|++|+++++ .++...... ...+++|++|+++++ .++......+
T Consensus 27 ~~~l~~L~ls~n~l~~~~~---~~~~~l~~L~~L~l~~n-~l~~~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~~~~ 96 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGS---YSFFSFPELQVLDLSRC-EIQTIEDGA-----YQSLSHLSTLILTGN-PIQSLALGAF 96 (276)
T ss_dssp CTTCCEEECTTCCCCEECT---TTTTTCTTCSEEECTTC-CCCEECTTT-----TTTCTTCCEEECTTC-CCCEECTTTT
T ss_pred CCCccEEECCCCcccccCH---hHhccccCCcEEECCCC-cCCccCHHH-----ccCCcCCCEEECCCC-ccCccChhhh
Confidence 3456777877765432211 12356788888888875 343211111 123578888888884 5554322222
Q ss_pred HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCH---HHHHH
Q 023841 136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMIL---LGLFY 212 (276)
Q Consensus 136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~---~~l~~ 212 (276)
..+++|++|+++++ .++.-.-.. ...+++|++|+++++ .+++..+......+++|++|++++| .++. ..+..
T Consensus 97 -~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~ 171 (276)
T 2z62_A 97 -SGLSSLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRV 171 (276)
T ss_dssp -TTCTTCCEEECTTS-CCCCSTTCC-CTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHH
T ss_pred -cCCccccEEECCCC-CccccCchh-cccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhh
Confidence 34778888888765 333211111 236778888888886 4443222222345788888888886 4543 23333
Q ss_pred HHhcCc---------hhhHH--HHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecceec
Q 023841 213 IWSNNI---------LLMSE--FIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKT 271 (276)
Q Consensus 213 l~~~~~---------~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~ 271 (276)
+..-.. ..+.. ........|+.++++++.+... .. ..+ ..+++|+.|++.+.+-.
T Consensus 172 l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~-~~-~~~--~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSV-PD-GIF--DRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp HHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCC-CT-TTT--TTCCSCCEEECCSSCBC
T ss_pred hhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeec-CH-hHh--cccccccEEEccCCccc
Confidence 321110 00000 0111223688888887776544 11 122 56889999999865543
No 42
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.70 E-value=2.8e-07 Score=72.10 Aligned_cols=119 Identities=14% Similarity=0.134 Sum_probs=91.7
Q ss_pred CCCCccEEecCCCCCCCHHHHHHHHhhC---CCCCeEeccCCCCcCHHHHHHHHH---hCCCCcEEecCCCCCCCHHHHH
Q 023841 112 SLQDLESLNLNGCQKISDKGIEIISSTC---PELKVFSIYWNVRVTDIGIQHLVK---NCKHIIDLNLSGCKNLLDKSLQ 185 (276)
Q Consensus 112 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~---~~L~~L~L~~~~~l~~~~l~~l~~---~~~~L~~L~l~~c~~ltd~~~~ 185 (276)
..+.|++|++++.+.+.+++...++..+ ..|+.|+|++| .++|.+...++. ..+.|++|+|+++ .|++.|..
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~ 116 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN-FLTPELLA 116 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHH
Confidence 3489999999985589999988887755 46999999987 899999877764 4578999999995 89999999
Q ss_pred HHHhc---CCCccEEecCCCC--CCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccC
Q 023841 186 LIADN---YQELESLNLTRYV--NMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSN 241 (276)
Q Consensus 186 ~l~~~---~~~L~~L~l~~c~--~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~ 241 (276)
.|++. .+.|+.|+|+++. .+++++...++. .+..-+.|+.+++.++.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~---------aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM---------AIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH---------HHHHCSSCCEEECCCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH---------HHHhCCCcCeEeccCCC
Confidence 99874 3569999998752 578888776652 22333456666665444
No 43
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.69 E-value=1.8e-09 Score=95.75 Aligned_cols=62 Identities=19% Similarity=0.252 Sum_probs=28.2
Q ss_pred CCCccEEecCCCCCCCHHHHHH-HHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCC
Q 023841 113 LQDLESLNLNGCQKISDKGIEI-ISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGC 176 (276)
Q Consensus 113 ~~~L~~L~l~~c~~l~~~~~~~-l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c 176 (276)
+++|++|++++| .++...... ....+++|++|+++++ .++......+...+++|++|+++++
T Consensus 102 l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 102 LANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp CTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred cccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCC
Confidence 455666666663 444332221 1223555666666554 2332211111234555666665554
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.69 E-value=3.7e-10 Score=95.08 Aligned_cols=165 Identities=13% Similarity=0.151 Sum_probs=90.8
Q ss_pred ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (276)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~ 160 (276)
..+++|++|+++++ .++..... .....+++|++|+++++ .++..... ....+++|++|+++++ .+++..+..
T Consensus 98 ~~l~~L~~L~l~~n-~l~~~~~~----~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~ 169 (306)
T 2z66_A 98 LGLEQLEHLDFQHS-NLKQMSEF----SVFLSLRNLIYLDISHT-HTRVAFNG-IFNGLSSLEVLKMAGN-SFQENFLPD 169 (306)
T ss_dssp ETCTTCCEEECTTS-EEESSTTT----TTTTTCTTCCEEECTTS-CCEECSTT-TTTTCTTCCEEECTTC-EEGGGEECS
T ss_pred CCCCCCCEEECCCC-cccccccc----hhhhhccCCCEEECCCC-cCCccchh-hcccCcCCCEEECCCC-ccccccchh
Confidence 45666777776663 22211100 01123467777777774 43322111 1234677777777765 343321222
Q ss_pred HHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceeccccc
Q 023841 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSS 240 (276)
Q Consensus 161 l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~ 240 (276)
....+++|++|++++| .+++.....+ ..+++|+.|+++++ .+++.. ...+.+++.|+.++++++
T Consensus 170 ~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~-------------~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 170 IFTELRNLTFLDLSQC-QLEQLSPTAF-NSLSSLQVLNMSHN-NFFSLD-------------TFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp CCTTCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECTTS-CCSBCC-------------SGGGTTCTTCCEEECTTS
T ss_pred HHhhCcCCCEEECCCC-CcCCcCHHHh-cCCCCCCEEECCCC-ccCccC-------------hhhccCcccCCEeECCCC
Confidence 2335677888888776 4443211122 24677888888876 454311 113466788999999888
Q ss_pred CCCCCcceeEEEeeccC-CCCceeeeecceeccc
Q 023841 241 NGGDHLAFAYIIETNTY-KHGKEKHIIETIKTGQ 273 (276)
Q Consensus 241 ~~~~~~~~~~~~~~~~~-~~L~~l~~~~~~~~~~ 273 (276)
.+... ....+ ..+ ++|+.|++.+++-.+|
T Consensus 234 ~l~~~-~~~~~---~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 234 HIMTS-KKQEL---QHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCCBC-SSSSC---CCCCTTCCEEECTTCCEECS
T ss_pred CCccc-CHHHH---HhhhccCCEEEccCCCeecc
Confidence 87654 22222 344 4899999988775544
No 45
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.68 E-value=4.7e-08 Score=87.17 Aligned_cols=38 Identities=5% Similarity=-0.081 Sum_probs=24.2
Q ss_pred HcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841 226 YHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 269 (276)
Q Consensus 226 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 269 (276)
...++.|+.++++.+.+.+... + ..+++|+.|++.+|.
T Consensus 327 ~~~l~~L~~L~l~~n~l~~~~~----l--~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 327 VSSLTKLQRLFFYNNKVSDVSS----L--ANLTNINWLSAGHNQ 364 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG----G--TTCTTCCEEECCSSC
T ss_pred hccCccCCEeECCCCccCCchh----h--ccCCCCCEEeCCCCc
Confidence 3456677777776666554411 2 567788888877764
No 46
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.68 E-value=1.2e-09 Score=97.81 Aligned_cols=135 Identities=16% Similarity=0.177 Sum_probs=67.0
Q ss_pred CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841 56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135 (276)
Q Consensus 56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 135 (276)
+..++.+++++........ -.+..+++|++|+++++ .++...-.. ...+++|++|+++++ .++......
T Consensus 31 ~~~l~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n-~i~~~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~~~- 99 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQ---DEFASFPHLEELELNEN-IVSAVEPGA-----FNNLFNLRTLGLRSN-RLKLIPLGV- 99 (477)
T ss_dssp CTTCSEEECCSSCCCEECT---TTTTTCTTCCEEECTTS-CCCEECTTT-----TTTCTTCCEEECCSS-CCCSCCTTS-
T ss_pred CCCCcEEECCCCccceECH---hHccCCCCCCEEECCCC-ccCEeChhh-----hhCCccCCEEECCCC-cCCccCccc-
Confidence 3455666666654332110 11356677777777764 333211111 123467777777773 444322111
Q ss_pred HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCC
Q 023841 136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMI 206 (276)
Q Consensus 136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it 206 (276)
...+++|++|+++++ .++...-.. ...+++|++|+++++ .++...... ...+++|+.|++++| .++
T Consensus 100 ~~~l~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~ 165 (477)
T 2id5_A 100 FTGLSNLTKLDISEN-KIVILLDYM-FQDLYNLKSLEVGDN-DLVYISHRA-FSGLNSLEQLTLEKC-NLT 165 (477)
T ss_dssp STTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEEECCT-TCCEECTTS-STTCTTCCEEEEESC-CCS
T ss_pred ccCCCCCCEEECCCC-ccccCChhH-ccccccCCEEECCCC-ccceeChhh-ccCCCCCCEEECCCC-cCc
Confidence 123677777777765 332211111 235667777777765 333211111 124667777777776 444
No 47
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.67 E-value=3.8e-09 Score=89.30 Aligned_cols=168 Identities=16% Similarity=0.114 Sum_probs=103.8
Q ss_pred ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHH--HHHHHHh-hCCCCCeEeccCCCCcCHHH
Q 023841 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDK--GIEIISS-TCPELKVFSIYWNVRVTDIG 157 (276)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~--~~~~l~~-~~~~L~~L~L~~~~~l~~~~ 157 (276)
..+++|++|+++++ .++...-..+. ...+++|++|+++++ .++.. .+..+.. .+++|++|+++++ .++...
T Consensus 92 ~~l~~L~~L~L~~n-~l~~~~~~~~~---~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~ 165 (312)
T 1wwl_A 92 LGISGLQELTLENL-EVTGTAPPPLL---EATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFS 165 (312)
T ss_dssp HTTSCCCEEEEEEE-BCBSCCCCCSS---SCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCC
T ss_pred cCcCCccEEEccCC-cccchhHHHHH---HhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccch
Confidence 36889999999985 44321111110 134699999999994 66654 2333322 1389999999987 454322
Q ss_pred HHHHHHhCCCCcEEecCCCCCCCHHHHH-HH-HhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCcccee
Q 023841 158 IQHLVKNCKHIIDLNLSGCKNLLDKSLQ-LI-ADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAV 235 (276)
Q Consensus 158 l~~l~~~~~~L~~L~l~~c~~ltd~~~~-~l-~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l 235 (276)
...+. .+++|++|+++++...++.++. .+ ...+++|++|++++| .++..+ .+. .....+++.|+.+
T Consensus 166 ~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~--~~~--------~~~~~~l~~L~~L 233 (312)
T 1wwl_A 166 CEQVR-VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPS--GVC--------SALAAARVQLQGL 233 (312)
T ss_dssp TTTCC-CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHH--HHH--------HHHHHTTCCCSEE
T ss_pred HHHhc-cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchH--HHH--------HHHHhcCCCCCEE
Confidence 22233 6889999999997433333332 22 156899999999998 676321 110 1234567788888
Q ss_pred cccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841 236 QINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 269 (276)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 269 (276)
+++.+.+.+..+... + ..+++|+.|++.++.
T Consensus 234 ~Ls~N~l~~~~~~~~-~--~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 234 DLSHNSLRDAAGAPS-C--DWPSQLNSLNLSFTG 264 (312)
T ss_dssp ECTTSCCCSSCCCSC-C--CCCTTCCEEECTTSC
T ss_pred ECCCCcCCcccchhh-h--hhcCCCCEEECCCCc
Confidence 888777766421111 1 345777777776653
No 48
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.65 E-value=4.5e-09 Score=93.10 Aligned_cols=39 Identities=8% Similarity=0.093 Sum_probs=19.2
Q ss_pred cCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841 227 HGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 269 (276)
Q Consensus 227 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 269 (276)
.++++|+.++++.+.+... .. ..+ ..+++|+.|++.+.+
T Consensus 252 ~~l~~L~~L~L~~N~l~~~-~~-~~~--~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 252 DNLQSLVEINLAHNNLTLL-PH-DLF--TPLHHLERIHLHHNP 290 (440)
T ss_dssp TTCTTCCEEECTTSCCCCC-CT-TTT--SSCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCCCCCcc-Ch-hHh--ccccCCCEEEcCCCC
Confidence 3445555555555554432 11 111 345666666666554
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.63 E-value=1.4e-09 Score=96.69 Aligned_cols=191 Identities=16% Similarity=0.082 Sum_probs=90.6
Q ss_pred CCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHH
Q 023841 57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS 136 (276)
Q Consensus 57 ~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 136 (276)
+.++.++++++...... .-.+..+++|++|+++++ .++...... ...+++|++|+++++ .++...-.. .
T Consensus 75 ~~l~~L~L~~n~i~~~~---~~~~~~l~~L~~L~Ls~n-~i~~~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~~~-~ 143 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQ---ADTFRHLHHLEVLQLGRN-SIRQIEVGA-----FNGLASLNTLELFDN-WLTVIPSGA-F 143 (452)
T ss_dssp TTCSEEECCSSCCCEEC---TTTTTTCTTCCEEECCSS-CCCEECTTT-----TTTCTTCCEEECCSS-CCSBCCTTT-S
T ss_pred CCccEEECcCCcCceEC---HHHcCCCCCCCEEECCCC-ccCCcChhh-----ccCcccCCEEECCCC-cCCccChhh-h
Confidence 34566666665433211 111356777888888774 443211111 123477777777774 444321111 2
Q ss_pred hhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHh-
Q 023841 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWS- 215 (276)
Q Consensus 137 ~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~- 215 (276)
..+++|++|+++++ .++.-.- .....+++|+.|++++|..++.-.... ...+++|+.|++++| .+++.. .+..
T Consensus 144 ~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~~-~~~l~~L~~L~L~~n-~l~~~~--~~~~l 217 (452)
T 3zyi_A 144 EYLSKLRELWLRNN-PIESIPS-YAFNRVPSLMRLDLGELKKLEYISEGA-FEGLFNLKYLNLGMC-NIKDMP--NLTPL 217 (452)
T ss_dssp SSCTTCCEEECCSC-CCCEECT-TTTTTCTTCCEEECCCCTTCCEECTTT-TTTCTTCCEEECTTS-CCSSCC--CCTTC
T ss_pred cccCCCCEEECCCC-CcceeCH-hHHhcCCcccEEeCCCCCCccccChhh-ccCCCCCCEEECCCC-cccccc--ccccc
Confidence 23667777777765 3331111 112245666666666654443211111 123556666666665 333210 0000
Q ss_pred ----------cCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecc
Q 023841 216 ----------NNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIET 268 (276)
Q Consensus 216 ----------~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~ 268 (276)
+.........+.+++.|+.++++++.+.... . ..+ ..+++|+.|++.++
T Consensus 218 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~-~~~--~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 218 VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE-R-NAF--DGLASLVELNLAHN 276 (452)
T ss_dssp TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC-T-TTT--TTCTTCCEEECCSS
T ss_pred ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC-H-HHh--cCCCCCCEEECCCC
Confidence 0000000123556677777777666654321 1 112 56788888888776
No 50
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.63 E-value=1.1e-08 Score=92.38 Aligned_cols=161 Identities=15% Similarity=0.124 Sum_probs=97.8
Q ss_pred ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHH-HHHHHHhhCCCCCeEeccCCCCcCHHHHH
Q 023841 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDK-GIEIISSTCPELKVFSIYWNVRVTDIGIQ 159 (276)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~-~~~~l~~~~~~L~~L~L~~~~~l~~~~l~ 159 (276)
..+++|++|+++++ .+++..... ...+++|+.|+++++ .++.. .+......+++|++|+++++ .++...-.
T Consensus 321 ~~l~~L~~L~Ls~n-~l~~~~~~~-----~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~ 392 (520)
T 2z7x_B 321 SKISPFLHLDFSNN-LLTDTVFEN-----CGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKK 392 (520)
T ss_dssp SSCCCCCEEECCSS-CCCTTTTTT-----CCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGG
T ss_pred hhCCcccEEEeECC-ccChhhhhh-----hccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCC-cCCccccc
Confidence 46778888888874 444321111 134578888888884 66642 22233445788888888876 34321111
Q ss_pred HHHHhCCCCcEEecCCCCCCCHHHHHHHHhcC-CCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceeccc
Q 023841 160 HLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY-QELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQIN 238 (276)
Q Consensus 160 ~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~-~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~ 238 (276)
.....+++|++|++++| .+++... ... ++|+.|++++| .++. +.. ...+++.|+.++++
T Consensus 393 ~~~~~l~~L~~L~Ls~N-~l~~~~~----~~l~~~L~~L~Ls~N-~l~~--ip~------------~~~~l~~L~~L~L~ 452 (520)
T 2z7x_B 393 GDCSWTKSLLSLNMSSN-ILTDTIF----RCLPPRIKVLDLHSN-KIKS--IPK------------QVVKLEALQELNVA 452 (520)
T ss_dssp CSCCCCTTCCEEECCSS-CCCGGGG----GSCCTTCCEEECCSS-CCCC--CCG------------GGGGCTTCCEEECC
T ss_pred chhccCccCCEEECcCC-CCCcchh----hhhcccCCEEECCCC-cccc--cch------------hhhcCCCCCEEECC
Confidence 11235678888888886 4543222 222 57888888887 5541 110 23378889999998
Q ss_pred ccCCCCCcceeEEEeeccCCCCceeeeecceeccc
Q 023841 239 SSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ 273 (276)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 273 (276)
++.+... +.. .+ ..+++|+.|++.+++-.+|
T Consensus 453 ~N~l~~l-~~~-~~--~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 453 SNQLKSV-PDG-IF--DRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp SSCCCCC-CTT-TT--TTCTTCCEEECCSSCBCCC
T ss_pred CCcCCcc-CHH-Hh--ccCCcccEEECcCCCCccc
Confidence 8887643 221 23 5788999999988775543
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.63 E-value=6.5e-10 Score=93.59 Aligned_cols=136 Identities=13% Similarity=0.093 Sum_probs=72.2
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCC
Q 023841 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ 192 (276)
Q Consensus 113 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~ 192 (276)
+++|++|+++++ .++..........+++|+.|+++++ .++..... ....+++|++|+++++ .+++..+......++
T Consensus 100 l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 100 LEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNG-IFNGLSSLEVLKMAGN-SFQENFLPDIFTELR 175 (306)
T ss_dssp CTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTS-CCEECSTT-TTTTCTTCCEEECTTC-EEGGGEECSCCTTCT
T ss_pred CCCCCEEECCCC-cccccccchhhhhccCCCEEECCCC-cCCccchh-hcccCcCCCEEECCCC-ccccccchhHHhhCc
Confidence 456666666653 3332211112233566666666654 22211111 1224566777777665 333211112223466
Q ss_pred CccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeeccee
Q 023841 193 ELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK 270 (276)
Q Consensus 193 ~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~ 270 (276)
+|++|++++| .+++.. ...+.+++.|+.++++++.+.+.... .+ ..+++|+.|++.++.-
T Consensus 176 ~L~~L~Ls~n-~l~~~~-------------~~~~~~l~~L~~L~L~~N~l~~~~~~--~~--~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 176 NLTFLDLSQC-QLEQLS-------------PTAFNSLSSLQVLNMSHNNFFSLDTF--PY--KCLNSLQVLDYSLNHI 235 (306)
T ss_dssp TCCEEECTTS-CCCEEC-------------TTTTTTCTTCCEEECTTSCCSBCCSG--GG--TTCTTCCEEECTTSCC
T ss_pred CCCEEECCCC-CcCCcC-------------HHHhcCCCCCCEEECCCCccCccChh--hc--cCcccCCEeECCCCCC
Confidence 7777777775 444311 11345678888999988876554221 12 5788999999988753
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.62 E-value=1.5e-09 Score=96.18 Aligned_cols=191 Identities=16% Similarity=0.110 Sum_probs=85.2
Q ss_pred CccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHh
Q 023841 58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS 137 (276)
Q Consensus 58 ~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 137 (276)
.++.++++++....... -.+..+++|++|+++++ .++...... ...+++|++|+++++ .++...-.. ..
T Consensus 65 ~l~~L~L~~n~i~~~~~---~~~~~l~~L~~L~Ls~n-~i~~i~~~~-----~~~l~~L~~L~L~~n-~l~~~~~~~-~~ 133 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKV---NSFKHLRHLEILQLSRN-HIRTIEIGA-----FNGLANLNTLELFDN-RLTTIPNGA-FV 133 (440)
T ss_dssp TCSEEECCSCCCCEECT---TTTSSCSSCCEEECCSS-CCCEECGGG-----GTTCSSCCEEECCSS-CCSSCCTTT-SC
T ss_pred CCcEEEccCCcCCeeCH---HHhhCCCCCCEEECCCC-cCCccChhh-----ccCCccCCEEECCCC-cCCeeCHhH-hh
Confidence 44556665544322110 11356677777777764 333211111 123466777777763 444211111 12
Q ss_pred hCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHh--
Q 023841 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWS-- 215 (276)
Q Consensus 138 ~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~-- 215 (276)
.+++|++|+++++ .++.-.-. ....+++|+.|++++|..++.-... ....+++|+.|++++| .+++.. .+..
T Consensus 134 ~l~~L~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n-~l~~~~--~~~~l~ 207 (440)
T 3zyj_A 134 YLSKLKELWLRNN-PIESIPSY-AFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMC-NLREIP--NLTPLI 207 (440)
T ss_dssp SCSSCCEEECCSC-CCCEECTT-TTTTCTTCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTS-CCSSCC--CCTTCS
T ss_pred ccccCceeeCCCC-cccccCHH-HhhhCcccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCC-cCcccc--ccCCCc
Confidence 3566666666654 23211101 1124556666666554433311110 1123455555555554 333210 0000
Q ss_pred ---------cCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841 216 ---------NNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 269 (276)
Q Consensus 216 ---------~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 269 (276)
+....+....+.++++|+.++++.+.+... .. ..+ ..+++|+.|++.++.
T Consensus 208 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~--~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI-ER-NAF--DNLQSLVEINLAHNN 266 (440)
T ss_dssp SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CT-TSS--TTCTTCCEEECTTSC
T ss_pred ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEE-Ch-hhh--cCCCCCCEEECCCCC
Confidence 000000011345566777777766665433 11 112 567888888887763
No 53
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.62 E-value=3.8e-08 Score=82.37 Aligned_cols=150 Identities=19% Similarity=0.205 Sum_probs=106.9
Q ss_pred CCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHH
Q 023841 55 YPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEI 134 (276)
Q Consensus 55 ~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 134 (276)
..+.++.++++++...+... +..+++|+.|+++++ .+++. .. ...+++|++|+++++ .+++. ..
T Consensus 66 ~l~~L~~L~L~~n~l~~~~~-----l~~l~~L~~L~l~~n-~l~~~--~~-----l~~l~~L~~L~L~~n-~i~~~--~~ 129 (291)
T 1h6t_A 66 YLPNVTKLFLNGNKLTDIKP-----LANLKNLGWLFLDEN-KVKDL--SS-----LKDLKKLKSLSLEHN-GISDI--NG 129 (291)
T ss_dssp GCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSS-CCCCG--GG-----GTTCTTCCEEECTTS-CCCCC--GG
T ss_pred cCCCCCEEEccCCccCCCcc-----cccCCCCCEEECCCC-cCCCC--hh-----hccCCCCCEEECCCC-cCCCC--hh
Confidence 35678889998876554322 468999999999985 45441 11 234699999999995 66653 22
Q ss_pred HHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHH
Q 023841 135 ISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIW 214 (276)
Q Consensus 135 l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~ 214 (276)
...+++|+.|+++++ .+++- .. ...+++|++|++++| .+++... ...+++|+.|++++| .+++. .
T Consensus 130 -l~~l~~L~~L~l~~n-~l~~~--~~-l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~L~~N-~i~~l--~--- 194 (291)
T 1h6t_A 130 -LVHLPQLESLYLGNN-KITDI--TV-LSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKN-HISDL--R--- 194 (291)
T ss_dssp -GGGCTTCCEEECCSS-CCCCC--GG-GGGCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCBC--G---
T ss_pred -hcCCCCCCEEEccCC-cCCcc--hh-hccCCCCCEEEccCC-ccccchh---hcCCCccCEEECCCC-cCCCC--h---
Confidence 345899999999987 55542 22 347899999999997 5554322 456899999999997 67652 0
Q ss_pred hcCchhhHHHHHcCCCccceecccccCCCCC
Q 023841 215 SNNILLMSEFIYHGIRFFQAVQINSSNGGDH 245 (276)
Q Consensus 215 ~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~ 245 (276)
.+..+++|+.++++.+.+.+.
T Consensus 195 ----------~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 195 ----------ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp ----------GGTTCTTCSEEEEEEEEEECC
T ss_pred ----------hhccCCCCCEEECcCCcccCC
Confidence 246678899999987776544
No 54
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.61 E-value=3.7e-09 Score=80.96 Aligned_cols=134 Identities=16% Similarity=0.258 Sum_probs=74.6
Q ss_pred cCCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHH
Q 023841 54 SYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIE 133 (276)
Q Consensus 54 ~~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 133 (276)
..++.++.++++++....... ... +..+++|+.|+++++ .++.. .....+++|+.|+++++ .++.. +.
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i-~~~-~~~l~~L~~L~l~~n-~l~~~-------~~~~~l~~L~~L~Ls~N-~l~~~-~~ 88 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKI-EGL-TAEFVNLEFLSLINV-GLISV-------SNLPKLPKLKKLELSEN-RIFGG-LD 88 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBC-SSC-CGGGGGCCEEEEESS-CCCCC-------SSCCCCSSCCEEEEESC-CCCSC-CC
T ss_pred CCcccCCEEECCCCCCChhhH-HHH-HHhCCCCCEEeCcCC-CCCCh-------hhhccCCCCCEEECcCC-cCchH-HH
Confidence 345667777777765431111 111 245677777777774 34432 11234577777777774 44442 22
Q ss_pred HHHhhCCCCCeEeccCCCCcCHH-HHHHHHHhCCCCcEEecCCCCCCCHHHH--HHHHhcCCCccEEecCCC
Q 023841 134 IISSTCPELKVFSIYWNVRVTDI-GIQHLVKNCKHIIDLNLSGCKNLLDKSL--QLIADNYQELESLNLTRY 202 (276)
Q Consensus 134 ~l~~~~~~L~~L~L~~~~~l~~~-~l~~l~~~~~~L~~L~l~~c~~ltd~~~--~~l~~~~~~L~~L~l~~c 202 (276)
.+...+++|+.|+++++ .+++- .+..+ ..+++|++|++++| .+++... ......+|+|+.|++++|
T Consensus 89 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l-~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 89 MLAEKLPNLTHLNLSGN-KLKDISTLEPL-KKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp HHHHHCTTCCEEECBSS-SCCSSGGGGGG-SSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred HHHhhCCCCCEEeccCC-ccCcchhHHHH-hcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC
Confidence 33445777777777776 45442 12222 35677777777776 3432211 123445777777777776
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.60 E-value=8.2e-09 Score=91.73 Aligned_cols=196 Identities=13% Similarity=0.072 Sum_probs=97.8
Q ss_pred CCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHH
Q 023841 55 YPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEI 134 (276)
Q Consensus 55 ~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 134 (276)
..+.++.++++++....... -.+..+++|++|+++++ .++.. .......+++|++|+++++ .++...-.
T Consensus 97 ~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~L~~n-~l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~~~~~- 165 (452)
T 3zyi_A 97 HLHHLEVLQLGRNSIRQIEV---GAFNGLASLNTLELFDN-WLTVI-----PSGAFEYLSKLRELWLRNN-PIESIPSY- 165 (452)
T ss_dssp TCTTCCEEECCSSCCCEECT---TTTTTCTTCCEEECCSS-CCSBC-----CTTTSSSCTTCCEEECCSC-CCCEECTT-
T ss_pred CCCCCCEEECCCCccCCcCh---hhccCcccCCEEECCCC-cCCcc-----ChhhhcccCCCCEEECCCC-CcceeCHh-
Confidence 45567778887765432111 11346777888888774 33311 1111123567777777773 44432111
Q ss_pred HHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHH---HH
Q 023841 135 ISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLG---LF 211 (276)
Q Consensus 135 l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~---l~ 211 (276)
....+++|+.|++++|..++.-.... ..++++|+.|++++| .+++- .. ...+++|+.|+++++ .++... +.
T Consensus 166 ~~~~l~~L~~L~l~~~~~l~~i~~~~-~~~l~~L~~L~L~~n-~l~~~--~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~ 239 (452)
T 3zyi_A 166 AFNRVPSLMRLDLGELKKLEYISEGA-FEGLFNLKYLNLGMC-NIKDM--PN-LTPLVGLEELEMSGN-HFPEIRPGSFH 239 (452)
T ss_dssp TTTTCTTCCEEECCCCTTCCEECTTT-TTTCTTCCEEECTTS-CCSSC--CC-CTTCTTCCEEECTTS-CCSEECGGGGT
T ss_pred HHhcCCcccEEeCCCCCCccccChhh-ccCCCCCCEEECCCC-ccccc--cc-ccccccccEEECcCC-cCcccCccccc
Confidence 12235666666666543332211111 124556666666654 33211 01 123455555555554 333211 11
Q ss_pred HHHh--------cCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecceec
Q 023841 212 YIWS--------NNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKT 271 (276)
Q Consensus 212 ~l~~--------~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~ 271 (276)
.+.. ..........+.++++|+.++++.+.+... .. ..+ ..+++|+.|++.+++-.
T Consensus 240 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~--~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL-PH-DLF--TPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC-CT-TSS--TTCTTCCEEECCSSCEE
T ss_pred CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc-Ch-HHh--ccccCCCEEEccCCCcC
Confidence 1000 000000112456788999999988887644 21 122 57899999999987643
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.59 E-value=1.1e-09 Score=93.46 Aligned_cols=43 Identities=7% Similarity=0.082 Sum_probs=25.7
Q ss_pred HcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecceecc
Q 023841 226 YHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTG 272 (276)
Q Consensus 226 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 272 (276)
+.+++.|+.++++++........ .+ ..+++|+.|++.+|...+
T Consensus 249 ~~~l~~L~~L~L~~n~~~~~~p~--~~--~~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 249 FGGRAPLKRLILKDCSNLLTLPL--DI--HRLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp TTCCCCCCEEECTTCTTCCBCCT--TG--GGCTTCCEEECTTCTTCC
T ss_pred hcCCCCCCEEECCCCCchhhcch--hh--hcCCCCCEEeCCCCCchh
Confidence 44566777777766554433211 12 567778888877776554
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.58 E-value=6.7e-09 Score=89.22 Aligned_cols=192 Identities=11% Similarity=0.003 Sum_probs=104.5
Q ss_pred CCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHH-HccCCCCCccEEecCCCCCCCHHHHH
Q 023841 55 YPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKT-KCLGSLQDLESLNLNGCQKISDKGIE 133 (276)
Q Consensus 55 ~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~-~~~~~~~~L~~L~l~~c~~l~~~~~~ 133 (276)
..+.++.++++++....... -.+..+++|++|+++++ .++. +.. .....+++|++|+++++..++.....
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n-~l~~-----l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 168 (353)
T 2z80_A 98 SLGSLEHLDLSYNYLSNLSS---SWFKPLSSLTFLNLLGN-PYKT-----LGETSLFSHLTKLQILRVGNMDTFTKIQRK 168 (353)
T ss_dssp TCTTCCEEECCSSCCSSCCH---HHHTTCTTCSEEECTTC-CCSS-----SCSSCSCTTCTTCCEEEEEESSSCCEECTT
T ss_pred CCCCCCEEECCCCcCCcCCH---hHhCCCccCCEEECCCC-CCcc-----cCchhhhccCCCCcEEECCCCccccccCHH
Confidence 34667888887765432111 11246778888888874 3331 111 11133577888887775333332111
Q ss_pred HHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCC----------
Q 023841 134 IISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYV---------- 203 (276)
Q Consensus 134 ~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~---------- 203 (276)
.+ ..+++|++|+++++ .++......+ ..+++|++|+++++ .++.-.- .....+++|+.|+++++.
T Consensus 169 ~~-~~l~~L~~L~l~~n-~l~~~~~~~l-~~l~~L~~L~l~~n-~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 243 (353)
T 2z80_A 169 DF-AGLTFLEELEIDAS-DLQSYEPKSL-KSIQNVSHLILHMK-QHILLLE-IFVDVTSSVECLELRDTDLDTFHFSELS 243 (353)
T ss_dssp TT-TTCCEEEEEEEEET-TCCEECTTTT-TTCSEEEEEEEECS-CSTTHHH-HHHHHTTTEEEEEEESCBCTTCCCC---
T ss_pred Hc-cCCCCCCEEECCCC-CcCccCHHHH-hccccCCeecCCCC-ccccchh-hhhhhcccccEEECCCCccccccccccc
Confidence 11 23666777777665 2332111112 24566666666665 3332221 122235666666666651
Q ss_pred ----------------CCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeec
Q 023841 204 ----------------NMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIE 267 (276)
Q Consensus 204 ----------------~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~ 267 (276)
.+++.++..+ .-.+..++.|+.++++++.+... .. .++ ..+++|+.|++.+
T Consensus 244 ~~~~~~~l~~l~L~~~~l~~~~l~~l---------~~~l~~l~~L~~L~Ls~N~l~~i-~~-~~~--~~l~~L~~L~L~~ 310 (353)
T 2z80_A 244 TGETNSLIKKFTFRNVKITDESLFQV---------MKLLNQISGLLELEFSRNQLKSV-PD-GIF--DRLTSLQKIWLHT 310 (353)
T ss_dssp ---CCCCCCEEEEESCBCCHHHHHHH---------HHHHHTCTTCCEEECCSSCCCCC-CT-TTT--TTCTTCCEEECCS
T ss_pred cccccchhhccccccccccCcchhhh---------HHHHhcccCCCEEECCCCCCCcc-CH-HHH--hcCCCCCEEEeeC
Confidence 2333333332 12467889999999998887643 21 122 5789999999999
Q ss_pred ceeccc
Q 023841 268 TIKTGQ 273 (276)
Q Consensus 268 ~~~~~~ 273 (276)
++-.+|
T Consensus 311 N~~~~~ 316 (353)
T 2z80_A 311 NPWDCS 316 (353)
T ss_dssp SCBCCC
T ss_pred CCccCc
Confidence 876554
No 58
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.58 E-value=2.7e-09 Score=98.16 Aligned_cols=40 Identities=3% Similarity=-0.056 Sum_probs=21.8
Q ss_pred HcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841 226 YHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 269 (276)
Q Consensus 226 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 269 (276)
+.+++.|+.++++++.+..... ..+ ..+++|++|++.++.
T Consensus 472 ~~~l~~L~~L~Ls~n~l~~~~~--~~~--~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 472 LQTLGRLEILVLSFCDLSSIDQ--HAF--TSLKMMNHVDLSHNR 511 (606)
T ss_dssp GGGCTTCCEEECTTSCCCEECT--TTT--TTCTTCCEEECCSSC
T ss_pred hccCCCccEEECCCCccCccCh--hhh--ccccCCCEEECCCCc
Confidence 4455666666666655432210 112 456777777777653
No 59
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.57 E-value=2.7e-09 Score=98.15 Aligned_cols=136 Identities=16% Similarity=0.161 Sum_probs=69.8
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCC
Q 023841 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ 192 (276)
Q Consensus 113 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~ 192 (276)
+++|+.|++++| .++...... ...+++|++|+++++ .+++..+......+++|+.|++++| .++...... ...++
T Consensus 423 l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~ 497 (606)
T 3vq2_A 423 LEKLLYLDISYT-NTKIDFDGI-FLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGV-FDTLH 497 (606)
T ss_dssp CTTCCEEECTTS-CCEECCTTT-TTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTT-TTTCT
T ss_pred cccCCEEECcCC-CCCccchhh-hcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCC-cCCccChhh-hcccc
Confidence 355556666553 332211111 123556666666655 3332211112235566666666665 333211111 12456
Q ss_pred CccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCC-CCceeeeecceec
Q 023841 193 ELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYK-HGKEKHIIETIKT 271 (276)
Q Consensus 193 ~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~-~L~~l~~~~~~~~ 271 (276)
+|++|++++| .+++.. ...+.+++.|+.++++++.+... +. .+ ..++ +|+.+++.+++-.
T Consensus 498 ~L~~L~Ls~N-~l~~~~-------------~~~~~~l~~L~~L~l~~N~l~~~-p~--~~--~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 498 RLQLLNMSHN-NLLFLD-------------SSHYNQLYSLSTLDCSFNRIETS-KG--IL--QHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp TCCEEECCSS-CCSCEE-------------GGGTTTCTTCCEEECTTSCCCCE-ES--CG--GGSCTTCCEEECCSCCCC
T ss_pred cCCEEECCCC-cCCCcC-------------HHHccCCCcCCEEECCCCcCccc-CH--hH--hhhcccCcEEEccCCCcc
Confidence 6777777665 443311 11455677888888888876532 21 12 4565 5888888887644
Q ss_pred c
Q 023841 272 G 272 (276)
Q Consensus 272 ~ 272 (276)
.
T Consensus 559 c 559 (606)
T 3vq2_A 559 C 559 (606)
T ss_dssp C
T ss_pred c
Confidence 4
No 60
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.56 E-value=2.8e-09 Score=96.81 Aligned_cols=174 Identities=13% Similarity=0.110 Sum_probs=83.6
Q ss_pred CCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHH
Q 023841 57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS 136 (276)
Q Consensus 57 ~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 136 (276)
+.++.++++++....... -.+..+++|++|+++++ .++...-..+ ..+++|++|+++++ .++...-..+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n-~i~~~~~~~~-----~~l~~L~~L~Ls~n-~l~~~~~~~~- 94 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGH---GDLRACANLQVLILKSS-RINTIEGDAF-----YSLGSLEHLDLSDN-HLSSLSSSWF- 94 (549)
T ss_dssp TTCCEEECCSSCCCEECS---STTSSCTTCCEEECTTS-CCCEECTTTT-----TTCTTCCEEECTTS-CCCSCCHHHH-
T ss_pred CCccEEECcCCccCccCh---hhhhcCCcccEEECCCC-CcCccChhhc-----cccccCCEEECCCC-ccCccCHHHh-
Confidence 356666766654332110 11246677777777764 3332111111 23467777777774 4444333333
Q ss_pred hhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHh-
Q 023841 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWS- 215 (276)
Q Consensus 137 ~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~- 215 (276)
..+++|++|+++++ .++.-.......++++|++|++++|..+++-.... ...+++|+.|+++++ .++...-..+..
T Consensus 95 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~l~~l 171 (549)
T 2z81_A 95 GPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID-FAGLTSLNELEIKAL-SLRNYQSQSLKSI 171 (549)
T ss_dssp TTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT-TTTCCEEEEEEEEET-TCCEECTTTTTTC
T ss_pred ccCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhh-hhcccccCeeeccCC-cccccChhhhhcc
Confidence 33677777777765 33321111112356677777776654333211111 123566666666665 343211111100
Q ss_pred ----------cCchhhHHHHHcCCCccceecccccCCCC
Q 023841 216 ----------NNILLMSEFIYHGIRFFQAVQINSSNGGD 244 (276)
Q Consensus 216 ----------~~~~~l~~~~~~~~~~L~~l~l~~~~~~~ 244 (276)
.............++.|+.++++.+.+..
T Consensus 172 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp SEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred ccCceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence 00011112234567889999998877655
No 61
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.55 E-value=1.3e-08 Score=90.20 Aligned_cols=167 Identities=14% Similarity=0.179 Sum_probs=96.5
Q ss_pred cCCCccEEeccCCCCCcHHHHHHHHHHccC----------------------------------CCCCccEEecCCCCCC
Q 023841 82 RYRHVREINLEFAQDIEDRHLELLKTKCLG----------------------------------SLQDLESLNLNGCQKI 127 (276)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~----------------------------------~~~~L~~L~l~~c~~l 127 (276)
.+++|++|+++++ .++......+...... ..++|+.|+++++ .+
T Consensus 210 ~~~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l 287 (455)
T 3v47_A 210 KNTSITTLDLSGN-GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS-KI 287 (455)
T ss_dssp TTCEEEEEECTTS-CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS-CC
T ss_pred ccceeeeEecCCC-cccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCc-cc
Confidence 3467888888884 6666666665553210 1145666666653 44
Q ss_pred CHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCH
Q 023841 128 SDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMIL 207 (276)
Q Consensus 128 ~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~ 207 (276)
+...-.. ...+++|++|+++++ .++......+ ..+++|++|++++| .+++..... ...+++|+.|++++| .++.
T Consensus 288 ~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~ 361 (455)
T 3v47_A 288 FALLKSV-FSHFTDLEQLTLAQN-EINKIDDNAF-WGLTHLLKLNLSQN-FLGSIDSRM-FENLDKLEVLDLSYN-HIRA 361 (455)
T ss_dssp CEECTTT-TTTCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSS-CCCEECGGG-GTTCTTCCEEECCSS-CCCE
T ss_pred cccchhh-cccCCCCCEEECCCC-cccccChhHh-cCcccCCEEECCCC-ccCCcChhH-hcCcccCCEEECCCC-cccc
Confidence 3321111 234677777777765 3443211122 25677788888776 444221111 234677888888776 4543
Q ss_pred HHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecceeccc
Q 023841 208 LGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ 273 (276)
Q Consensus 208 ~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 273 (276)
.. ...+.++++|+.++++++.+... ... .+ ..+++|+.|++.+++-.++
T Consensus 362 ~~-------------~~~~~~l~~L~~L~L~~N~l~~~-~~~-~~--~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 362 LG-------------DQSFLGLPNLKELALDTNQLKSV-PDG-IF--DRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp EC-------------TTTTTTCTTCCEEECCSSCCSCC-CTT-TT--TTCTTCCEEECCSSCBCCC
T ss_pred cC-------------hhhccccccccEEECCCCccccC-CHh-Hh--ccCCcccEEEccCCCcccC
Confidence 21 11356678899999988877654 211 22 5788999999988765543
No 62
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.55 E-value=7.9e-08 Score=58.65 Aligned_cols=48 Identities=21% Similarity=0.321 Sum_probs=36.4
Q ss_pred cCCCCCCCcHHHHHHHhcCCCHhhhHHHhccCHHHHHHHhcCCCCccEEe
Q 023841 14 EETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVID 63 (276)
Q Consensus 14 ~~~~~~~~~p~il~~if~~L~~~~l~~~~~v~~~~~~~~~~~~~~~~~l~ 63 (276)
...|.++| +|++.+||+||+..++.++++||+.|+. ++.++..|+.++
T Consensus 6 ~~~~~~LP-~eil~~I~~~L~~~dl~~~~~Vck~w~~-~~~~~~lW~~ld 53 (53)
T 1fs1_A 6 GVSWDSLP-DELLLGIFSCLCLPELLKVSGVCKRWYR-LASDESLWQTLD 53 (53)
T ss_dssp ---CCSSC-HHHHHHHHTTSCGGGHHHHHTTCHHHHH-HHTCGGGC----
T ss_pred CCCHHHCC-HHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhCChHHHHhcC
Confidence 45678877 7999999999999999999999999765 566888898764
No 63
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.55 E-value=3.8e-09 Score=87.48 Aligned_cols=173 Identities=11% Similarity=0.077 Sum_probs=110.6
Q ss_pred cCCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHH
Q 023841 54 SYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIE 133 (276)
Q Consensus 54 ~~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 133 (276)
...+.++.++++++...... .+..+++|++|+++++ .++... ......+++|++|+++++ .++...-
T Consensus 60 ~~l~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~L~~n-~l~~~~-----~~~~~~l~~L~~L~L~~n-~l~~~~~- 126 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLHDIS-----ALKELTNLTYLILTGN-QLQSLP-----NGVFDKLTNLKELVLVEN-QLQSLPD- 126 (272)
T ss_dssp GGCTTCCEEECTTSCCCCCG-----GGTTCTTCCEEECTTS-CCCCCC-----TTTTTTCTTCCEEECTTS-CCCCCCT-
T ss_pred ccCCCCcEEECCCCCCCCch-----hhcCCCCCCEEECCCC-ccCccC-----hhHhcCCcCCCEEECCCC-cCCccCH-
Confidence 34567888999987654422 2467899999999985 444211 111134689999999995 5553221
Q ss_pred HHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHH
Q 023841 134 IISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYI 213 (276)
Q Consensus 134 ~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l 213 (276)
.....+++|+.|+++++ .++.-.- .....+++|+.|++++| .+++... .....+++|+.|++++| .++...
T Consensus 127 ~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~---- 197 (272)
T 3rfs_A 127 GVFDKLTNLTYLNLAHN-QLQSLPK-GVFDKLTNLTELDLSYN-QLQSLPE-GVFDKLTQLKDLRLYQN-QLKSVP---- 197 (272)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCSCCC----
T ss_pred HHhccCCCCCEEECCCC-ccCccCH-HHhccCccCCEEECCCC-CcCccCH-HHhcCCccCCEEECCCC-cCCccC----
Confidence 11235889999999987 5542211 12247889999999997 5552211 12245899999999997 555311
Q ss_pred HhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecc
Q 023841 214 WSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIET 268 (276)
Q Consensus 214 ~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~ 268 (276)
...+..++.|+.+++..+.+. ..||+|+.+.+..+
T Consensus 198 ---------~~~~~~l~~L~~L~l~~N~~~-----------~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 198 ---------DGVFDRLTSLQYIWLHDNPWD-----------CTCPGIRYLSEWIN 232 (272)
T ss_dssp ---------TTTTTTCTTCCEEECCSSCBC-----------CCTTTTHHHHHHHH
T ss_pred ---------HHHHhCCcCCCEEEccCCCcc-----------ccCcHHHHHHHHHH
Confidence 113456788888888777532 34677777665543
No 64
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.55 E-value=4.8e-10 Score=102.29 Aligned_cols=91 Identities=12% Similarity=0.119 Sum_probs=48.4
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCC
Q 023841 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGG 243 (276)
Q Consensus 164 ~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~ 243 (276)
.+++|+.|++++| .+++..+......+++|+.|++++| .+++.. ...+..++.|+.++++++.+.
T Consensus 443 ~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~-------------~~~~~~l~~L~~L~l~~n~l~ 507 (570)
T 2z63_A 443 GLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLS-------------PTAFNSLSSLQVLNMASNQLK 507 (570)
T ss_dssp TCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEEC-------------TTTTTTCTTCCEEECCSSCCS
T ss_pred cCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCC-ccccCC-------------hhhhhcccCCCEEeCCCCcCC
Confidence 4455555555554 2222111111223555666666655 333211 113456778888888777765
Q ss_pred CCcceeEEEeeccCCCCceeeeecceeccc
Q 023841 244 DHLAFAYIIETNTYKHGKEKHIIETIKTGQ 273 (276)
Q Consensus 244 ~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 273 (276)
.... ..+ ..+++|+.+++.+++-.++
T Consensus 508 ~~~~--~~~--~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 508 SVPD--GIF--DRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CCCT--TTT--TTCTTCCEEECCSSCBCCC
T ss_pred CCCH--HHh--hcccCCcEEEecCCcccCC
Confidence 4411 112 5678888888888765543
No 65
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.54 E-value=7.1e-09 Score=89.07 Aligned_cols=174 Identities=13% Similarity=0.112 Sum_probs=74.5
Q ss_pred CccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHh
Q 023841 58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS 137 (276)
Q Consensus 58 ~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 137 (276)
.++.++++++...... .-.+..+++|++|+++++ .++...-.. ...+++|++|+++++ .++...-..+ .
T Consensus 53 ~L~~L~l~~n~i~~~~---~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~~l~~L~~L~Ls~n-~l~~~~~~~~-~ 121 (353)
T 2z80_A 53 AVKSLDLSNNRITYIS---NSDLQRCVNLQALVLTSN-GINTIEEDS-----FSSLGSLEHLDLSYN-YLSNLSSSWF-K 121 (353)
T ss_dssp TCCEEECTTSCCCEEC---TTTTTTCTTCCEEECTTS-CCCEECTTT-----TTTCTTCCEEECCSS-CCSSCCHHHH-T
T ss_pred cCcEEECCCCcCcccC---HHHhccCCCCCEEECCCC-ccCccCHhh-----cCCCCCCCEEECCCC-cCCcCCHhHh-C
Confidence 5566666665433211 011245666666666653 333211111 122466666666663 4443222112 3
Q ss_pred hCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHh--
Q 023841 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWS-- 215 (276)
Q Consensus 138 ~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~-- 215 (276)
.+++|++|+++++ .++.-........+++|++|++++|..++.-.... ...+++|++|++++| .++...-..+..
T Consensus 122 ~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~ 198 (353)
T 2z80_A 122 PLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD-FAGLTFLEELEIDAS-DLQSYEPKSLKSIQ 198 (353)
T ss_dssp TCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT-TTTCCEEEEEEEEET-TCCEECTTTTTTCS
T ss_pred CCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHH-ccCCCCCCEEECCCC-CcCccCHHHHhccc
Confidence 3566666666654 23210000012245566666666543232111111 113455555555554 232211000000
Q ss_pred ---------cCchhhHHHHHcCCCccceecccccCCCCC
Q 023841 216 ---------NNILLMSEFIYHGIRFFQAVQINSSNGGDH 245 (276)
Q Consensus 216 ---------~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~ 245 (276)
.............++.|+.++++.+.+...
T Consensus 199 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 237 (353)
T 2z80_A 199 NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237 (353)
T ss_dssp EEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTC
T ss_pred cCCeecCCCCccccchhhhhhhcccccEEECCCCccccc
Confidence 000011122344577888888877776653
No 66
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.53 E-value=4.8e-09 Score=96.51 Aligned_cols=42 Identities=5% Similarity=-0.021 Sum_probs=24.1
Q ss_pred HcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecceecc
Q 023841 226 YHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTG 272 (276)
Q Consensus 226 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 272 (276)
+..++.| .++++++.+.... . ..+ ..+++|+.+++.+++-.+
T Consensus 520 l~~l~~L-~L~L~~N~l~~~~-~-~~~--~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 520 LSHLKGI-YLNLASNHISIIL-P-SLL--PILSQQRTINLRQNPLDC 561 (606)
T ss_dssp GTTCCSC-EEECCSSCCCCCC-G-GGH--HHHHTSSEEECTTCCEEC
T ss_pred hCccccc-EEECcCCcccccC-H-hhc--ccCCCCCEEeCCCCCccc
Confidence 3445556 6666666654331 1 112 456788888888776544
No 67
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.52 E-value=1.3e-07 Score=85.78 Aligned_cols=160 Identities=15% Similarity=0.085 Sum_probs=79.9
Q ss_pred cCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHH-HHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGI-EIISSTCPELKVFSIYWNVRVTDIGIQH 160 (276)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~l~~~~~~L~~L~L~~~~~l~~~~l~~ 160 (276)
.+++|+.|+++++ .+++...... .+...+++|+.|+++++ .++.... ......+++|++|++++| .++. +..
T Consensus 332 ~l~~L~~L~Ls~N-~l~~~~~~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~--lp~ 404 (549)
T 2z81_A 332 HLKSLEFLDLSEN-LMVEEYLKNS--ACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHP--MPD 404 (549)
T ss_dssp HCTTCCEEECCSS-CCCHHHHHHH--TCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCC--CCS
T ss_pred cCccccEEEccCC-ccccccccch--hhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCcc--CCh
Confidence 4566666666663 4444322211 11223466666666663 4544321 123344666666666655 3331 111
Q ss_pred HHHhCCCCcEEecCCCC--------------------CCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchh
Q 023841 161 LVKNCKHIIDLNLSGCK--------------------NLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILL 220 (276)
Q Consensus 161 l~~~~~~L~~L~l~~c~--------------------~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~ 220 (276)
....+++|++|++++|. .+++ +...+++|+.|++++| .++. +.
T Consensus 405 ~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~-----~~~~l~~L~~L~Ls~N-~l~~--ip--------- 467 (549)
T 2z81_A 405 SCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDS-----FSLFLPRLQELYISRN-KLKT--LP--------- 467 (549)
T ss_dssp CCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSC-----CCCCCTTCCEEECCSS-CCSS--CC---------
T ss_pred hhcccccccEEECCCCCcccccchhcCCceEEECCCCChhh-----hcccCChhcEEECCCC-ccCc--CC---------
Confidence 11233455555555542 2221 0123556666666665 4431 11
Q ss_pred hHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecceeccc
Q 023841 221 MSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ 273 (276)
Q Consensus 221 l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 273 (276)
....++.|+.++++++.+..... ..+ ..+++|+.|++.+++-.++
T Consensus 468 ----~~~~l~~L~~L~Ls~N~l~~~~~--~~~--~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 468 ----DASLFPVLLVMKISRNQLKSVPD--GIF--DRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp ----CGGGCTTCCEEECCSSCCCCCCT--TGG--GGCTTCCEEECCSSCBCCC
T ss_pred ----CcccCccCCEEecCCCccCCcCH--HHH--hcCcccCEEEecCCCccCC
Confidence 01245678888887777654311 112 5678888888888775543
No 68
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.52 E-value=4.9e-08 Score=89.84 Aligned_cols=151 Identities=19% Similarity=0.210 Sum_probs=106.2
Q ss_pred cCCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHH
Q 023841 54 SYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIE 133 (276)
Q Consensus 54 ~~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 133 (276)
...+.++.|+++.+....... +..+++|+.|+++++ .+++. . ....+++|+.|+++++ .+.+. .
T Consensus 62 ~~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~Ls~N-~l~~l--~-----~l~~l~~L~~L~Ls~N-~l~~l--~ 125 (605)
T 1m9s_A 62 QYLPNVTKLFLNGNKLTDIKP-----LTNLKNLGWLFLDEN-KIKDL--S-----SLKDLKKLKSLSLEHN-GISDI--N 125 (605)
T ss_dssp GGCTTCCEEECTTSCCCCCGG-----GGGCTTCCEEECCSS-CCCCC--T-----TSTTCTTCCEEECTTS-CCCCC--G
T ss_pred ccCCCCCEEEeeCCCCCCChh-----hccCCCCCEEECcCC-CCCCC--h-----hhccCCCCCEEEecCC-CCCCC--c
Confidence 345678899998876544322 468999999999986 44431 1 1245699999999995 66652 2
Q ss_pred HHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHH
Q 023841 134 IISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYI 213 (276)
Q Consensus 134 ~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l 213 (276)
. ...+++|+.|+|++| .+++- .. ...+++|+.|++++| .+++... ...+++|+.|+|++| .+++. .
T Consensus 126 ~-l~~l~~L~~L~Ls~N-~l~~l--~~-l~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~i~~l--~-- 191 (605)
T 1m9s_A 126 G-LVHLPQLESLYLGNN-KITDI--TV-LSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKN-HISDL--R-- 191 (605)
T ss_dssp G-GGGCTTCSEEECCSS-CCCCC--GG-GGSCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCBC--G--
T ss_pred c-ccCCCccCEEECCCC-ccCCc--hh-hcccCCCCEEECcCC-cCCCchh---hccCCCCCEEECcCC-CCCCC--h--
Confidence 2 345899999999987 56543 23 347899999999997 5553222 456899999999998 66652 1
Q ss_pred HhcCchhhHHHHHcCCCccceecccccCCCCC
Q 023841 214 WSNNILLMSEFIYHGIRFFQAVQINSSNGGDH 245 (276)
Q Consensus 214 ~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~ 245 (276)
.+..++.|+.|+++.+.+.+.
T Consensus 192 -----------~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 192 -----------ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp -----------GGTTCTTCSEEECCSEEEECC
T ss_pred -----------HHccCCCCCEEEccCCcCcCC
Confidence 245678888888877665443
No 69
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.51 E-value=2.6e-09 Score=98.24 Aligned_cols=40 Identities=8% Similarity=-0.114 Sum_probs=25.8
Q ss_pred HcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841 226 YHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 269 (276)
Q Consensus 226 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 269 (276)
+.+++.|+.++++++.+.+. . ...+ ..+++|+.|++.++.
T Consensus 493 ~~~l~~L~~L~Ls~N~l~~~-~-~~~~--~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 493 FDTLHRLQLLNMSHNNLLFL-D-SSHY--NQLYSLSTLDCSFNR 532 (606)
T ss_dssp TTTCTTCCEEECCSSCCSCE-E-GGGT--TTCTTCCEEECTTSC
T ss_pred hcccccCCEEECCCCcCCCc-C-HHHc--cCCCcCCEEECCCCc
Confidence 45677788888877776543 1 1112 567788888887764
No 70
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.50 E-value=5.2e-08 Score=80.30 Aligned_cols=147 Identities=16% Similarity=0.149 Sum_probs=91.2
Q ss_pred CCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHH
Q 023841 57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS 136 (276)
Q Consensus 57 ~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 136 (276)
+.++.++++++...... .+..+++|+.|+++++ .+++..- + ..+++|+.|+++++ .++.. ..+.
T Consensus 41 ~~L~~L~l~~n~i~~l~-----~l~~l~~L~~L~L~~N-~i~~~~~--l-----~~l~~L~~L~L~~N-~l~~l--~~~~ 104 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA-----GMQFFTNLKELHLSHN-QISDLSP--L-----KDLTKLEELSVNRN-RLKNL--NGIP 104 (263)
T ss_dssp TTCSEEECTTSCCCCCT-----TGGGCTTCCEEECCSS-CCCCCGG--G-----TTCSSCCEEECCSS-CCSCC--TTCC
T ss_pred CcCcEEECcCCCcccch-----HHhhCCCCCEEECCCC-ccCCChh--h-----ccCCCCCEEECCCC-ccCCc--Cccc
Confidence 45677787776544322 1356788888888874 4443211 1 23588888888884 55541 1111
Q ss_pred hhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhc
Q 023841 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSN 216 (276)
Q Consensus 137 ~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~ 216 (276)
. ++|+.|+++++ .+++- .. ...+++|+.|+++++ .+++-. . ...+++|+.|+++++ .+++. .
T Consensus 105 ~--~~L~~L~L~~N-~l~~~--~~-l~~l~~L~~L~Ls~N-~i~~~~--~-l~~l~~L~~L~L~~N-~i~~~--~----- 166 (263)
T 1xeu_A 105 S--ACLSRLFLDNN-ELRDT--DS-LIHLKNLEILSIRNN-KLKSIV--M-LGFLSKLEVLDLHGN-EITNT--G----- 166 (263)
T ss_dssp C--SSCCEEECCSS-CCSBS--GG-GTTCTTCCEEECTTS-CCCBCG--G-GGGCTTCCEEECTTS-CCCBC--T-----
T ss_pred c--CcccEEEccCC-ccCCC--hh-hcCcccccEEECCCC-cCCCCh--H-HccCCCCCEEECCCC-cCcch--H-----
Confidence 2 77888888876 45442 22 336788888888886 455421 2 335788888888886 56553 0
Q ss_pred CchhhHHHHHcCCCccceecccccCCCCC
Q 023841 217 NILLMSEFIYHGIRFFQAVQINSSNGGDH 245 (276)
Q Consensus 217 ~~~~l~~~~~~~~~~L~~l~l~~~~~~~~ 245 (276)
.+..++.|+.+++..+.+...
T Consensus 167 --------~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 167 --------GLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --------TSTTCCCCCEEEEEEEEEECC
T ss_pred --------HhccCCCCCEEeCCCCcccCC
Confidence 345677788888877765544
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.49 E-value=1e-08 Score=86.89 Aligned_cols=219 Identities=9% Similarity=0.038 Sum_probs=107.1
Q ss_pred CCCCCCcHHHHHHHhcCC---CHhhhHHH--hccCHHHHHHHhcCCCCccEEecCCccCcchhhHHHhccccCCCccEEe
Q 023841 16 TWSKETVPKVIRIMSTRL---SQRDIISL--LLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREIN 90 (276)
Q Consensus 16 ~~~~~~~p~il~~if~~L---~~~~l~~~--~~v~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~ 90 (276)
+.+...+++++..+|..+ ...++... ..+-.. .....+.++.++++++....... +..+++|++|+
T Consensus 16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~-----~~~l~~L~~L~ 86 (317)
T 3o53_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA----DLAPFTKLELLNLSSNVLYETLD-----LESLSTLRTLD 86 (317)
T ss_dssp SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHH----HHTTCTTCCEEECTTSCCEEEEE-----ETTCTTCCEEE
T ss_pred eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHH----HhhCCCcCCEEECCCCcCCcchh-----hhhcCCCCEEE
Confidence 344455677777777644 33333322 222222 23455678888888776543221 35667777777
Q ss_pred ccCCCCCcHHHHH-----------HHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHH
Q 023841 91 LEFAQDIEDRHLE-----------LLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQ 159 (276)
Q Consensus 91 l~~~~~l~~~~~~-----------~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~ 159 (276)
++++ .++..... .+.......+++|++|+++++ .++...-..+ ..+++|+.|+++++ .++.....
T Consensus 87 Ls~n-~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N-~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~ 162 (317)
T 3o53_A 87 LNNN-YVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN-KITMLRDLDE-GCRSRVQYLDLKLN-EIDTVNFA 162 (317)
T ss_dssp CCSS-EEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSS-CCCSGGGBCT-GGGSSEEEEECTTS-CCCEEEGG
T ss_pred CcCC-ccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCC-CCCCccchhh-hccCCCCEEECCCC-CCCcccHH
Confidence 7764 22210000 000000112344555555552 3333111111 22455666666654 34433333
Q ss_pred HHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccc
Q 023841 160 HLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINS 239 (276)
Q Consensus 160 ~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~ 239 (276)
.+...+++|++|++++| .+++. .... .+++|+.|+++++ .++... ..+..++.|+.+++++
T Consensus 163 ~~~~~l~~L~~L~L~~N-~l~~~--~~~~-~l~~L~~L~Ls~N-~l~~l~--------------~~~~~l~~L~~L~L~~ 223 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYN-FIYDV--KGQV-VFAKLKTLDLSSN-KLAFMG--------------PEFQSAAGVTWISLRN 223 (317)
T ss_dssp GGGGGTTTCCEEECTTS-CCCEE--ECCC-CCTTCCEEECCSS-CCCEEC--------------GGGGGGTTCSEEECTT
T ss_pred HHhhccCcCCEEECCCC-cCccc--cccc-ccccCCEEECCCC-cCCcch--------------hhhcccCcccEEECcC
Confidence 33334566666666665 33311 0000 2566666666665 443210 0245667888888888
Q ss_pred cCCCCCcceeEEEeeccCCCCceeeeecceec
Q 023841 240 SNGGDHLAFAYIIETNTYKHGKEKHIIETIKT 271 (276)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~ 271 (276)
+.+... ...+ ..+++|+.|++.+++-.
T Consensus 224 N~l~~l---~~~~--~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 224 NKLVLI---EKAL--RFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp SCCCEE---CTTC--CCCTTCCEEECTTCCCB
T ss_pred Ccccch---hhHh--hcCCCCCEEEccCCCcc
Confidence 776532 1122 56788888888876543
No 72
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.49 E-value=1.7e-09 Score=92.11 Aligned_cols=180 Identities=15% Similarity=0.146 Sum_probs=114.1
Q ss_pred CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841 56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135 (276)
Q Consensus 56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 135 (276)
...+..+++++.....-. .. +..+++|++|+++++ .++. .-..+ ..+++|++|+++++ .++. +-.-
T Consensus 80 ~~~l~~L~L~~n~l~~lp--~~--l~~l~~L~~L~L~~n-~l~~-lp~~~-----~~l~~L~~L~Ls~n-~l~~--lp~~ 145 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFP--DQ--AFRLSHLQHMTIDAA-GLME-LPDTM-----QQFAGLETLTLARN-PLRA--LPAS 145 (328)
T ss_dssp STTCCEEEEESSCCSSCC--SC--GGGGTTCSEEEEESS-CCCC-CCSCG-----GGGTTCSEEEEESC-CCCC--CCGG
T ss_pred ccceeEEEccCCCchhcC--hh--hhhCCCCCEEECCCC-Cccc-hhHHH-----hccCCCCEEECCCC-cccc--CcHH
Confidence 356777888776543211 11 245889999999985 4431 10111 23489999999985 5552 2222
Q ss_pred HhhCCCCCeEeccCCCCcCHHHHHHH--------HHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCH
Q 023841 136 SSTCPELKVFSIYWNVRVTDIGIQHL--------VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMIL 207 (276)
Q Consensus 136 ~~~~~~L~~L~L~~~~~l~~~~l~~l--------~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~ 207 (276)
...+++|++|++++|...+.- -..+ ..++++|++|++++| .++ .+..-...+++|+.|++++| .++.
T Consensus 146 l~~l~~L~~L~L~~n~~~~~~-p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~--~lp~~l~~l~~L~~L~L~~N-~l~~ 220 (328)
T 4fcg_A 146 IASLNRLRELSIRACPELTEL-PEPLASTDASGEHQGLVNLQSLRLEWT-GIR--SLPASIANLQNLKSLKIRNS-PLSA 220 (328)
T ss_dssp GGGCTTCCEEEEEEETTCCCC-CSCSEEEC-CCCEEESTTCCEEEEEEE-CCC--CCCGGGGGCTTCCEEEEESS-CCCC
T ss_pred HhcCcCCCEEECCCCCCcccc-ChhHhhccchhhhccCCCCCEEECcCC-CcC--cchHhhcCCCCCCEEEccCC-CCCc
Confidence 345889999999986433210 0011 124889999999987 454 12122346899999999997 5552
Q ss_pred HHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecceecc
Q 023841 208 LGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTG 272 (276)
Q Consensus 208 ~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 272 (276)
+. . .+..+++|+.++++++.+.... ...+ ..+++|+.|++.+|...+
T Consensus 221 --l~-------~-----~l~~l~~L~~L~Ls~n~~~~~~--p~~~--~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 221 --LG-------P-----AIHHLPKLEELDLRGCTALRNY--PPIF--GGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp --CC-------G-----GGGGCTTCCEEECTTCTTCCBC--CCCT--TCCCCCCEEECTTCTTCC
T ss_pred --Cc-------h-----hhccCCCCCEEECcCCcchhhh--HHHh--cCCCCCCEEECCCCCchh
Confidence 11 1 3567889999999887765542 1223 678999999999987655
No 73
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.48 E-value=2.6e-08 Score=94.33 Aligned_cols=137 Identities=18% Similarity=0.209 Sum_probs=73.3
Q ss_pred CCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHH
Q 023841 55 YPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEI 134 (276)
Q Consensus 55 ~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 134 (276)
..+.++.++++++...+... ..-.+..+++|++|+++++. ++...- ......+++|++|+++++ .++......
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~-~~~~l~~l~~L~~L~Ls~n~-l~~~~~----~~~~~~l~~L~~L~Ls~n-~l~~~~~~~ 170 (768)
T 3rgz_A 98 CSASLTSLDLSRNSLSGPVT-TLTSLGSCSGLKFLNVSSNT-LDFPGK----VSGGLKLNSLEVLDLSAN-SISGANVVG 170 (768)
T ss_dssp CCTTCCEEECCSSEEEEEGG-GGGGGGGCTTCCEEECCSSE-EECCSS----CCSCCCCTTCSEEECCSS-CCEEETHHH
T ss_pred cCCCCCEEECCCCcCCCcCC-ChHHHhCCCCCCEEECcCCc-cCCcCC----HHHhccCCCCCEEECCCC-ccCCcCChh
Confidence 34567778887765432111 10123577888888888752 221000 000134578888888884 555433222
Q ss_pred --HHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCC
Q 023841 135 --ISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMI 206 (276)
Q Consensus 135 --l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it 206 (276)
....+++|++|+++++. ++... .+ ..+++|++|++++|. ++.. +.. ...+++|++|++++| .++
T Consensus 171 ~~~~~~l~~L~~L~Ls~n~-l~~~~--~~-~~l~~L~~L~Ls~n~-l~~~-~~~-l~~l~~L~~L~Ls~n-~l~ 236 (768)
T 3rgz_A 171 WVLSDGCGELKHLAISGNK-ISGDV--DV-SRCVNLEFLDVSSNN-FSTG-IPF-LGDCSALQHLDISGN-KLS 236 (768)
T ss_dssp HHHTTCCTTCCEEECCSSE-EESCC--BC-TTCTTCCEEECCSSC-CCSC-CCB-CTTCCSCCEEECCSS-CCC
T ss_pred hhhhccCCCCCEEECCCCc-ccccC--Cc-ccCCcCCEEECcCCc-CCCC-Ccc-cccCCCCCEEECcCC-cCC
Confidence 24457778888777662 32110 01 356777777777763 3211 111 234677777777776 454
No 74
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.48 E-value=1.3e-08 Score=88.58 Aligned_cols=84 Identities=10% Similarity=0.003 Sum_probs=39.4
Q ss_pred CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841 56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135 (276)
Q Consensus 56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 135 (276)
.+.++.++++++....... -.+..+++|++|+++++ .++. +.......+++|++|+++++ .++......
T Consensus 92 l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n-~l~~-----l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~- 160 (390)
T 3o6n_A 92 AHTIQKLYMGFNAIRYLPP---HVFQNVPLLTVLVLERN-DLSS-----LPRGIFHNTPKLTTLSMSNN-NLERIEDDT- 160 (390)
T ss_dssp CTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSS-CCCC-----CCTTTTTTCTTCCEEECCSS-CCCBCCTTT-
T ss_pred CCCcCEEECCCCCCCcCCH---HHhcCCCCCCEEECCCC-ccCc-----CCHHHhcCCCCCcEEECCCC-ccCccChhh-
Confidence 4455556665543322110 11245666677766663 3321 11111123466777777764 443321111
Q ss_pred HhhCCCCCeEeccCC
Q 023841 136 SSTCPELKVFSIYWN 150 (276)
Q Consensus 136 ~~~~~~L~~L~L~~~ 150 (276)
...+++|++|+++++
T Consensus 161 ~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 161 FQATTSLQNLQLSSN 175 (390)
T ss_dssp TSSCTTCCEEECCSS
T ss_pred ccCCCCCCEEECCCC
Confidence 123667777777765
No 75
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.46 E-value=1.7e-08 Score=92.84 Aligned_cols=36 Identities=11% Similarity=0.178 Sum_probs=16.9
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCC
Q 023841 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWN 150 (276)
Q Consensus 113 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~ 150 (276)
+++|++|+++++ .++...-..+ ..+++|+.|+++++
T Consensus 146 l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N 181 (597)
T 3oja_B 146 TPKLTTLSMSNN-NLERIEDDTF-QATTSLQNLQLSSN 181 (597)
T ss_dssp CTTCCEEECCSS-CCCBCCTTTT-TTCTTCCEEECTTS
T ss_pred CCCCCEEEeeCC-cCCCCChhhh-hcCCcCcEEECcCC
Confidence 455666666653 3332111111 23556666666654
No 76
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.45 E-value=6.4e-09 Score=85.05 Aligned_cols=158 Identities=11% Similarity=0.128 Sum_probs=86.8
Q ss_pred CCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHH
Q 023841 84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK 163 (276)
Q Consensus 84 ~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~ 163 (276)
++++.|+++++ .++...-.. ...+++|++|+++++ .++...-.. ...+++|++|+++++ .++.-.. ....
T Consensus 35 ~~l~~L~L~~n-~l~~~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~~ 104 (251)
T 3m19_A 35 ADTEKLDLQST-GLATLSDAT-----FRGLTKLTWLNLDYN-QLQTLSAGV-FDDLTELGTLGLANN-QLASLPL-GVFD 104 (251)
T ss_dssp TTCCEEECTTS-CCCCCCTTT-----TTTCTTCCEEECTTS-CCCCCCTTT-TTTCTTCCEEECTTS-CCCCCCT-TTTT
T ss_pred CCCCEEEccCC-CcCccCHhH-----hcCcccCCEEECCCC-cCCccCHhH-hccCCcCCEEECCCC-cccccCh-hHhc
Confidence 57778888774 333211111 123577888888874 554422111 234677888888765 4442111 1123
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCC
Q 023841 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGG 243 (276)
Q Consensus 164 ~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~ 243 (276)
.+++|++|+++++ .++.-.. .....+++|+.|+++++ .++... ...+.++++|+.++++++.+.
T Consensus 105 ~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~-------------~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 105 HLTQLDKLYLGGN-QLKSLPS-GVFDRLTKLKELRLNTN-QLQSIP-------------AGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp TCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-------------TTTTTTCTTCCEEECCSSCCS
T ss_pred ccCCCCEEEcCCC-cCCCcCh-hHhccCCcccEEECcCC-cCCccC-------------HHHcCcCcCCCEEECCCCcCC
Confidence 5678888888875 4441111 11234677888888876 554211 013455677778888777665
Q ss_pred CCcceeEEEeeccCCCCceeeeecceec
Q 023841 244 DHLAFAYIIETNTYKHGKEKHIIETIKT 271 (276)
Q Consensus 244 ~~~~~~~~~~~~~~~~L~~l~~~~~~~~ 271 (276)
.... ..+ ..+++|+.|++.+++-.
T Consensus 169 ~~~~--~~~--~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 169 SVPH--GAF--DRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCCT--TTT--TTCTTCCEEECCSCCBC
T ss_pred ccCH--HHH--hCCCCCCEEEeeCCcee
Confidence 4311 112 46677888877776543
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.44 E-value=7.2e-09 Score=85.71 Aligned_cols=176 Identities=13% Similarity=0.111 Sum_probs=111.4
Q ss_pred CccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHh
Q 023841 58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS 137 (276)
Q Consensus 58 ~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 137 (276)
.++.+++++..... +...-.+++++|+++++ .++... ......+++|++|+++++ .++...- .+..
T Consensus 17 ~~~~l~~~~~~l~~------ip~~~~~~l~~L~l~~n-~l~~~~-----~~~~~~l~~L~~L~l~~n-~l~~i~~-~~~~ 82 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA------IPSNIPADTKKLDLQSN-KLSSLP-----SKAFHRLTKLRLLYLNDN-KLQTLPA-GIFK 82 (270)
T ss_dssp TTTEEECTTSCCSS------CCSCCCTTCSEEECCSS-CCSCCC-----TTSSSSCTTCCEEECCSS-CCSCCCT-TTTS
T ss_pred CCCEEEccCCCCCc------cCCCCCCCCCEEECcCC-CCCeeC-----HHHhcCCCCCCEEECCCC-ccCeeCh-hhhc
Confidence 46677777654332 22123468999999985 444211 111234699999999995 5553211 1224
Q ss_pred hCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcC
Q 023841 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNN 217 (276)
Q Consensus 138 ~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~ 217 (276)
.+++|++|+++++ .++.-.. .....+++|++|+++++ .++..... ....+++|++|+++++ .++...
T Consensus 83 ~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~-------- 149 (270)
T 2o6q_A 83 ELKNLETLWVTDN-KLQALPI-GVFDQLVNLAELRLDRN-QLKSLPPR-VFDSLTKLTYLSLGYN-ELQSLP-------- 149 (270)
T ss_dssp SCTTCCEEECCSS-CCCCCCT-TTTTTCSSCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCCC--------
T ss_pred CCCCCCEEECCCC-cCCcCCH-hHcccccCCCEEECCCC-ccCeeCHH-HhCcCcCCCEEECCCC-cCCccC--------
Confidence 5899999999976 4443211 12246889999999996 44422211 1245899999999997 555321
Q ss_pred chhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841 218 ILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 269 (276)
Q Consensus 218 ~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 269 (276)
...+.+++.|+.++++.+.+..... ..+ ..+++|+.|++.++.
T Consensus 150 -----~~~~~~l~~L~~L~L~~n~l~~~~~--~~~--~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 150 -----KGVFDKLTSLKELRLYNNQLKRVPE--GAF--DKLTELKTLKLDNNQ 192 (270)
T ss_dssp -----TTTTTTCTTCCEEECCSSCCSCCCT--TTT--TTCTTCCEEECCSSC
T ss_pred -----HhHccCCcccceeEecCCcCcEeCh--hHh--ccCCCcCEEECCCCc
Confidence 1135678899999998887665421 112 578999999998873
No 78
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.43 E-value=1.5e-08 Score=90.55 Aligned_cols=37 Identities=5% Similarity=-0.113 Sum_probs=19.3
Q ss_pred CCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCC
Q 023841 55 YPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFA 94 (276)
Q Consensus 55 ~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~ 94 (276)
..+.++.++++++...... .-.+..+++|++|+++++
T Consensus 78 ~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~Ls~n 114 (477)
T 2id5_A 78 NLFNLRTLGLRSNRLKLIP---LGVFTGLSNLTKLDISEN 114 (477)
T ss_dssp TCTTCCEEECCSSCCCSCC---TTSSTTCTTCCEEECTTS
T ss_pred CCccCCEEECCCCcCCccC---cccccCCCCCCEEECCCC
Confidence 3456777777765432211 011245666666666653
No 79
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.42 E-value=1.5e-08 Score=85.76 Aligned_cols=158 Identities=12% Similarity=0.071 Sum_probs=105.9
Q ss_pred ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (276)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~ 160 (276)
..+++|++|+++++ .++...-..+ ..+++|+.|+++++ .++......+...+++|++|+++++ .++.. ..
T Consensus 117 ~~~~~L~~L~l~~N-~l~~~~~~~~-----~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~--~~ 186 (317)
T 3o53_A 117 SRGQGKKNIYLANN-KITMLRDLDE-----GCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN-FIYDV--KG 186 (317)
T ss_dssp CCCSSCEEEECCSS-CCCSGGGBCT-----GGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS-CCCEE--EC
T ss_pred cccCCCCEEECCCC-CCCCccchhh-----hccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCC-cCccc--cc
Confidence 44678888888874 4443211111 23589999999994 7777655566667899999999987 44432 11
Q ss_pred HHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceeccccc
Q 023841 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSS 240 (276)
Q Consensus 161 l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~ 240 (276)
.. .+++|++|++++| .++.-... ...+++|+.|+++++ .++. +. .....++.|+.++++.+
T Consensus 187 ~~-~l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~N-~l~~--l~------------~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 187 QV-VFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNN-KLVL--IE------------KALRFSQNLEHFDLRGN 247 (317)
T ss_dssp CC-CCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTS-CCCE--EC------------TTCCCCTTCCEEECTTC
T ss_pred cc-ccccCCEEECCCC-cCCcchhh--hcccCcccEEECcCC-cccc--hh------------hHhhcCCCCCEEEccCC
Confidence 11 4789999999997 55532111 345899999999997 6663 11 13466789999999988
Q ss_pred CCCCCcceeEEEeeccCCCCceeeeeccee
Q 023841 241 NGGDHLAFAYIIETNTYKHGKEKHIIETIK 270 (276)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~ 270 (276)
.+... .....+ ..+++|+.+.+..+.+
T Consensus 248 ~~~~~-~~~~~~--~~~~~L~~l~l~~~~~ 274 (317)
T 3o53_A 248 GFHCG-TLRDFF--SKNQRVQTVAKQTVKK 274 (317)
T ss_dssp CCBHH-HHHHHH--HTCHHHHHHHHHHHHH
T ss_pred CccCc-CHHHHH--hccccceEEECCCchh
Confidence 87622 222333 5678888888775543
No 80
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.41 E-value=3e-08 Score=91.30 Aligned_cols=38 Identities=5% Similarity=-0.071 Sum_probs=25.7
Q ss_pred cCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecceec
Q 023841 227 HGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKT 271 (276)
Q Consensus 227 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~ 271 (276)
..++.|+.++++++.+... . . ..+++|+.|++.+++-.
T Consensus 321 ~~l~~L~~L~L~~N~l~~~-~----~--~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 321 PQFDRLENLYLDHNSIVTL-K----L--STHHTLKNLTLSHNDWD 358 (597)
T ss_dssp HHHTTCSEEECCSSCCCCC-C----C--CTTCCCSEEECCSSCEE
T ss_pred ccCCCCCEEECCCCCCCCc-C----h--hhcCCCCEEEeeCCCCC
Confidence 4456777777777776544 2 2 57788888888876643
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.41 E-value=3.4e-08 Score=88.68 Aligned_cols=107 Identities=8% Similarity=0.065 Sum_probs=52.9
Q ss_pred CCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCc
Q 023841 139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNI 218 (276)
Q Consensus 139 ~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~ 218 (276)
+++|+.|+++++ .++......+...+++|+.|++++| .+++. ... ..+++|+.|+++++ .++..
T Consensus 143 l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~--~~~-~~l~~L~~L~Ls~N-~l~~~---------- 206 (487)
T 3oja_A 143 RSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN-FIYDV--KGQ-VVFAKLKTLDLSSN-KLAFM---------- 206 (487)
T ss_dssp GSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS-CCCEE--ECC-CCCTTCCEEECCSS-CCCEE----------
T ss_pred CCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCC-ccccc--ccc-ccCCCCCEEECCCC-CCCCC----------
Confidence 445555555544 3333222233334555555555554 23211 000 02455555555554 34321
Q ss_pred hhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeeccee
Q 023841 219 LLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK 270 (276)
Q Consensus 219 ~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~ 270 (276)
...+.+++.|+.++++++.+... ...+ ..+++|+.|++.+++-
T Consensus 207 ----~~~~~~l~~L~~L~Ls~N~l~~l---p~~l--~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 207 ----GPEFQSAAGVTWISLRNNKLVLI---EKAL--RFSQNLEHFDLRGNGF 249 (487)
T ss_dssp ----CGGGGGGTTCSEEECTTSCCCEE---CTTC--CCCTTCCEEECTTCCB
T ss_pred ----CHhHcCCCCccEEEecCCcCccc---chhh--ccCCCCCEEEcCCCCC
Confidence 00244567778888877776532 1112 4677888888877653
No 82
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.40 E-value=3.2e-08 Score=92.25 Aligned_cols=162 Identities=20% Similarity=0.239 Sum_probs=92.3
Q ss_pred CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841 56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135 (276)
Q Consensus 56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 135 (276)
++.++.+++++....... .-.+..+++|++|+++++ .++...-..+.. +++|+.|+++++ .++...-..+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~-----l~~L~~L~L~~n-~l~~l~~~~~ 93 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLP---AANFTRYSQLTSLDVGFN-TISKLEPELCQK-----LPMLKVLNLQHN-ELSQLSDKTF 93 (680)
T ss_dssp CTTCSEEECCSSCCCCCC---GGGGGGGTTCSEEECCSS-CCCCCCTTHHHH-----CTTCCEEECCSS-CCCCCCTTTT
T ss_pred CCCCcEEECCCCCCCCcC---HHHHhCCCcCcEEECCCC-ccCccCHHHHhc-----ccCcCEEECCCC-ccCccChhhh
Confidence 356777888876543211 111357888999999874 443322222222 488999999885 5543221122
Q ss_pred HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHh
Q 023841 136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWS 215 (276)
Q Consensus 136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~ 215 (276)
..+++|++|+++++ .++.-.-..+ .++++|++|++++| .++......+ ..+++|++|+++++ .++...-..
T Consensus 94 -~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~--- 164 (680)
T 1ziw_A 94 -AFCTNLTELHLMSN-SIQKIKNNPF-VKQKNLITLDLSHN-GLSSTKLGTQ-VQLENLQELLLSNN-KIQALKSEE--- 164 (680)
T ss_dssp -TTCTTCSEEECCSS-CCCCCCSCTT-TTCTTCCEEECCSS-CCSCCCCCSS-SCCTTCCEEECCSS-CCCCBCHHH---
T ss_pred -ccCCCCCEEECCCC-ccCccChhHc-cccCCCCEEECCCC-cccccCchhh-cccccCCEEEccCC-cccccCHHH---
Confidence 34788999998876 3432111122 36788999999886 3432211111 35788899998886 454322111
Q ss_pred cCchhhHHHHHcCCCccceecccccCCCC
Q 023841 216 NNILLMSEFIYHGIRFFQAVQINSSNGGD 244 (276)
Q Consensus 216 ~~~~~l~~~~~~~~~~L~~l~l~~~~~~~ 244 (276)
+....++.|+.++++.+.+..
T Consensus 165 --------~~~~~~~~L~~L~L~~n~l~~ 185 (680)
T 1ziw_A 165 --------LDIFANSSLKKLELSSNQIKE 185 (680)
T ss_dssp --------HGGGTTCEESEEECTTCCCCC
T ss_pred --------hhccccccccEEECCCCcccc
Confidence 122345677777776665543
No 83
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.40 E-value=8.3e-08 Score=79.08 Aligned_cols=146 Identities=14% Similarity=0.147 Sum_probs=95.8
Q ss_pred ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (276)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~ 160 (276)
..+++|++|+++++ .+++.. .+ ..+++|+.|+++++ .+++..- ...+++|+.|+++++ .+++ +..
T Consensus 38 ~~l~~L~~L~l~~n-~i~~l~--~l-----~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N-~l~~--l~~ 102 (263)
T 1xeu_A 38 KELSGVQNFNGDNS-NIQSLA--GM-----QFFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRN-RLKN--LNG 102 (263)
T ss_dssp HHHTTCSEEECTTS-CCCCCT--TG-----GGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSS-CCSC--CTT
T ss_pred hhcCcCcEEECcCC-Ccccch--HH-----hhCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCC-ccCC--cCc
Confidence 45788888888885 444321 12 12488999999885 6655332 445888999998876 4443 112
Q ss_pred HHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceeccccc
Q 023841 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSS 240 (276)
Q Consensus 161 l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~ 240 (276)
+. . ++|++|++++| .+++- .. ...+++|+.|+++++ .+++.. .+..++.|+.++++.+
T Consensus 103 ~~-~-~~L~~L~L~~N-~l~~~--~~-l~~l~~L~~L~Ls~N-~i~~~~---------------~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 103 IP-S-ACLSRLFLDNN-ELRDT--DS-LIHLKNLEILSIRNN-KLKSIV---------------MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp CC-C-SSCCEEECCSS-CCSBS--GG-GTTCTTCCEEECTTS-CCCBCG---------------GGGGCTTCCEEECTTS
T ss_pred cc-c-CcccEEEccCC-ccCCC--hh-hcCcccccEEECCCC-cCCCCh---------------HHccCCCCCEEECCCC
Confidence 22 2 78899999886 55542 22 335888999999887 565421 2456788888888888
Q ss_pred CCCCCcceeEEEeeccCCCCceeeeecce
Q 023841 241 NGGDHLAFAYIIETNTYKHGKEKHIIETI 269 (276)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 269 (276)
.+.+.. .+ ..+++|+.|++.++.
T Consensus 161 ~i~~~~----~l--~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 161 EITNTG----GL--TRLKKVNWIDLTGQK 183 (263)
T ss_dssp CCCBCT----TS--TTCCCCCEEEEEEEE
T ss_pred cCcchH----Hh--ccCCCCCEEeCCCCc
Confidence 776551 12 577888888887765
No 84
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.40 E-value=3.9e-08 Score=89.72 Aligned_cols=161 Identities=12% Similarity=0.119 Sum_probs=100.7
Q ss_pred ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHH-HHHHHHhhCCCCCeEeccCCCCcCHHHHH
Q 023841 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDK-GIEIISSTCPELKVFSIYWNVRVTDIGIQ 159 (276)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~-~~~~l~~~~~~L~~L~L~~~~~l~~~~l~ 159 (276)
..+++|++|+++++ .+++..... ...+++|+.|+++++ .++.. .+......+++|++|+++++ .++...-.
T Consensus 350 ~~l~~L~~L~l~~n-~l~~~~~~~-----~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~ 421 (562)
T 3a79_B 350 PSPSSFTFLNFTQN-VFTDSVFQG-----CSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYD 421 (562)
T ss_dssp SSCCCCCEEECCSS-CCCTTTTTT-----CCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSS
T ss_pred cCCCCceEEECCCC-ccccchhhh-----hcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCC-cCCCccCh
Confidence 46778888888874 454321111 134688888888884 66642 22223345788888888876 34321111
Q ss_pred HHHHhCCCCcEEecCCCCCCCHHHHHHHHhcC-CCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceeccc
Q 023841 160 HLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY-QELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQIN 238 (276)
Q Consensus 160 ~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~-~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~ 238 (276)
.....+++|+.|++++| .+++.. .... ++|+.|+++++ .++. +. . ...+++.|+.++++
T Consensus 422 ~~~~~l~~L~~L~l~~n-~l~~~~----~~~l~~~L~~L~L~~N-~l~~--ip-------~-----~~~~l~~L~~L~L~ 481 (562)
T 3a79_B 422 RTCAWAESILVLNLSSN-MLTGSV----FRCLPPKVKVLDLHNN-RIMS--IP-------K-----DVTHLQALQELNVA 481 (562)
T ss_dssp CCCCCCTTCCEEECCSS-CCCGGG----GSSCCTTCSEEECCSS-CCCC--CC-------T-----TTTSSCCCSEEECC
T ss_pred hhhcCcccCCEEECCCC-CCCcch----hhhhcCcCCEEECCCC-cCcc--cC-------h-----hhcCCCCCCEEECC
Confidence 12235678888888886 565422 2233 58899999887 6651 11 0 22378899999998
Q ss_pred ccCCCCCcceeEEEeeccCCCCceeeeecceeccc
Q 023841 239 SSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ 273 (276)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 273 (276)
++.+... ... .+ ..+++|+.+++.+++-.+|
T Consensus 482 ~N~l~~l-~~~-~~--~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 482 SNQLKSV-PDG-VF--DRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp SSCCCCC-CTT-ST--TTCTTCCCEECCSCCBCCC
T ss_pred CCCCCCC-CHH-HH--hcCCCCCEEEecCCCcCCC
Confidence 8887643 221 23 6789999999998775543
No 85
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.39 E-value=1.8e-08 Score=95.42 Aligned_cols=38 Identities=8% Similarity=-0.081 Sum_probs=19.5
Q ss_pred CCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCC
Q 023841 55 YPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFA 94 (276)
Q Consensus 55 ~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~ 94 (276)
..+.++.++++.+........ . ....+++|++|+++++
T Consensus 124 ~l~~L~~L~Ls~n~l~~~~~~-~-~~~~l~~L~~L~Ls~n 161 (768)
T 3rgz_A 124 SCSGLKFLNVSSNTLDFPGKV-S-GGLKLNSLEVLDLSAN 161 (768)
T ss_dssp GCTTCCEEECCSSEEECCSSC-C-SCCCCTTCSEEECCSS
T ss_pred CCCCCCEEECcCCccCCcCCH-H-HhccCCCCCEEECCCC
Confidence 345677777776543211110 0 0135666777777664
No 86
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.38 E-value=5.4e-08 Score=82.67 Aligned_cols=37 Identities=5% Similarity=-0.149 Sum_probs=20.0
Q ss_pred CCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCC
Q 023841 55 YPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFA 94 (276)
Q Consensus 55 ~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~ 94 (276)
..+.++.++++++....... -.+..+++|++|+++++
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 74 NLKNLHTLILINNKISKISP---GAFAPLVKLERLYLSKN 110 (330)
T ss_dssp TCTTCCEEECCSSCCCCBCT---TTTTTCTTCCEEECCSS
T ss_pred cCCCCCEEECCCCcCCeeCH---HHhcCCCCCCEEECCCC
Confidence 34567777777654332110 11245667777777663
No 87
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.38 E-value=2.7e-09 Score=97.33 Aligned_cols=133 Identities=11% Similarity=0.038 Sum_probs=66.7
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCC
Q 023841 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (276)
Q Consensus 114 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~ 193 (276)
++|++|+++++ .++...-. ...+++|++|+++++ .++..........+++|++|++++| .++.... .....+++
T Consensus 373 ~~L~~L~l~~n-~l~~~~~~--~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~ 446 (570)
T 2z63_A 373 TSLKYLDLSFN-GVITMSSN--FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFN-GIFNGLSS 446 (570)
T ss_dssp SCCCEEECCSC-SEEEEEEE--EETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTTS-CCEECCT-TTTTTCTT
T ss_pred CccCEEECCCC-cccccccc--ccccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcCC-cccccch-hhhhcCCc
Confidence 55555555553 22221100 223556666666554 2221111111235566666666665 2221111 11224666
Q ss_pred ccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841 194 LESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 269 (276)
Q Consensus 194 L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 269 (276)
|+.|++++| .+++..+. ..+.+++.|+.++++.+.+.+.. . ..+ ..+++|+.|++.+|.
T Consensus 447 L~~L~l~~n-~l~~~~~p------------~~~~~l~~L~~L~l~~n~l~~~~-~-~~~--~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 447 LEVLKMAGN-SFQENFLP------------DIFTELRNLTFLDLSQCQLEQLS-P-TAF--NSLSSLQVLNMASNQ 505 (570)
T ss_dssp CCEEECTTC-EEGGGEEC------------SCCTTCTTCCEEECTTSCCCEEC-T-TTT--TTCTTCCEEECCSSC
T ss_pred CcEEECcCC-cCccccch------------hhhhcccCCCEEECCCCccccCC-h-hhh--hcccCCCEEeCCCCc
Confidence 777777766 34321111 13566788888888877765331 1 112 578899999998874
No 88
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.38 E-value=7.7e-09 Score=98.96 Aligned_cols=140 Identities=16% Similarity=0.149 Sum_probs=84.9
Q ss_pred CCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHH
Q 023841 55 YPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEI 134 (276)
Q Consensus 55 ~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 134 (276)
.++.++.++++++...... .-.+..+++|++|+++++..+.. +....-..+++|+.|+++++ .++...-..
T Consensus 22 lp~~l~~LdLs~N~i~~i~---~~~~~~l~~L~~LdLs~n~~~~~-----i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~ 92 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVT---ASSFPFLEQLQLLELGSQYTPLT-----IDKEAFRNLPNLRILDLGSS-KIYFLHPDA 92 (844)
T ss_dssp SCTTCCEEEEESCCCCEEC---SSSCSSCCSCSEEEECTTCCCCE-----ECTTTTSSCTTCCEEECTTC-CCCEECTTS
T ss_pred CCCCcCEEECCCCcCCccC---hhHCcccccCeEEeCCCCCCccc-----cCHHHhcCCCCCCEEECCCC-cCcccCHhH
Confidence 3566788888876543211 11246788999999988633221 10111134688999999985 555432222
Q ss_pred HHhhCCCCCeEeccCCCCcCHHHHHH-HHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCH
Q 023841 135 ISSTCPELKVFSIYWNVRVTDIGIQH-LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMIL 207 (276)
Q Consensus 135 l~~~~~~L~~L~L~~~~~l~~~~l~~-l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~ 207 (276)
+ ..+++|++|+|++| .+++..... ....+++|++|++++| .++.........++++|++|+++++ .++.
T Consensus 93 ~-~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~ 162 (844)
T 3j0a_A 93 F-QGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSN-QIFL 162 (844)
T ss_dssp S-CSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESS-CCCC
T ss_pred c-cCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCC-cCCe
Confidence 2 34888999999887 454322221 1236789999999986 4443222222346889999999886 4543
No 89
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.37 E-value=4.9e-08 Score=82.96 Aligned_cols=192 Identities=13% Similarity=0.125 Sum_probs=102.5
Q ss_pred CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841 56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135 (276)
Q Consensus 56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 135 (276)
++.++.++++++....... -.+..+++|++|+++++ .++...-.. ...+++|++|+++++ .++...
T Consensus 51 ~~~l~~L~L~~n~i~~~~~---~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~~l~~L~~L~Ls~n-~l~~l~---- 116 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKD---GDFKNLKNLHTLILINN-KISKISPGA-----FAPLVKLERLYLSKN-QLKELP---- 116 (330)
T ss_dssp CTTCCEEECCSSCCCCBCT---TTTTTCTTCCEEECCSS-CCCCBCTTT-----TTTCTTCCEEECCSS-CCSBCC----
T ss_pred CCCCeEEECCCCcCCEeCh---hhhccCCCCCEEECCCC-cCCeeCHHH-----hcCCCCCCEEECCCC-cCCccC----
Confidence 4566778887765432111 12367889999999985 443221111 123588889998884 444211
Q ss_pred HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHH-HHHHhcCCCccEEecCCCCCCCHHH-----
Q 023841 136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSL-QLIADNYQELESLNLTRYVNMILLG----- 209 (276)
Q Consensus 136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~-~~l~~~~~~L~~L~l~~c~~it~~~----- 209 (276)
....++|++|+++++ .++......+ .++++|+.|+++++ .+++.++ ......+++|+.|+++++ .++...
T Consensus 117 ~~~~~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~~ 192 (330)
T 1xku_A 117 EKMPKTLQELRVHEN-EITKVRKSVF-NGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLPP 192 (330)
T ss_dssp SSCCTTCCEEECCSS-CCCBBCHHHH-TTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCCT
T ss_pred hhhcccccEEECCCC-cccccCHhHh-cCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCC-ccccCCccccc
Confidence 012357778877765 3443222222 36777778877775 3432111 112234677777777765 343210
Q ss_pred -HHHH--HhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841 210 -LFYI--WSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 269 (276)
Q Consensus 210 -l~~l--~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 269 (276)
+..+ ............+.++++|+.++++++.+.+... . .+ ..+++|++|++.++.
T Consensus 193 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~-~~--~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-G-SL--ANTPHLRELHLNNNK 251 (330)
T ss_dssp TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT-T-TG--GGSTTCCEEECCSSC
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh-h-hc--cCCCCCCEEECCCCc
Confidence 0000 0000000001245667888888888777654311 1 12 568889999888774
No 90
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.37 E-value=2.6e-08 Score=89.44 Aligned_cols=172 Identities=12% Similarity=-0.018 Sum_probs=114.1
Q ss_pred hcCCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHH
Q 023841 53 VSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGI 132 (276)
Q Consensus 53 ~~~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~ 132 (276)
+...+.++.++++++...+... +..+++|++|+++++ .+++. ...++|+.|+++++ .++....
T Consensus 54 ~~~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~Ls~N-~l~~l----------~~~~~L~~L~L~~N-~l~~~~~ 116 (487)
T 3oja_A 54 LAPFTKLELLNLSSNVLYETLD-----LESLSTLRTLDLNNN-YVQEL----------LVGPSIETLHAANN-NISRVSC 116 (487)
T ss_dssp GTTCTTCCEEECTTSCCEEEEE-----CTTCTTCCEEECCSS-EEEEE----------EECTTCCEEECCSS-CCCCEEE
T ss_pred HhCCCCCCEEEeeCCCCCCCcc-----cccCCCCCEEEecCC-cCCCC----------CCCCCcCEEECcCC-cCCCCCc
Confidence 3456688999999876543222 467899999999985 44321 12378999999985 5554322
Q ss_pred HHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHH
Q 023841 133 EIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFY 212 (276)
Q Consensus 133 ~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~ 212 (276)
..+++|+.|+++++ .++...-..+ ..+++|+.|+++++ .+++.....+...+++|+.|++++| .++..
T Consensus 117 ----~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~---- 184 (487)
T 3oja_A 117 ----SRGQGKKNIYLANN-KITMLRDLDE-GCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN-FIYDV---- 184 (487)
T ss_dssp ----CCCSSCEEEECCSS-CCCSGGGBCG-GGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS-CCCEE----
T ss_pred ----cccCCCCEEECCCC-CCCCCCchhh-cCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCC-ccccc----
Confidence 24688999999876 4543221122 35788999999986 6665444445546789999999997 56543
Q ss_pred HHhcCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841 213 IWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 269 (276)
Q Consensus 213 l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 269 (276)
+ ....++.|+.++++++.++.... .+ ..+++|+.|++.++.
T Consensus 185 -----~------~~~~l~~L~~L~Ls~N~l~~~~~---~~--~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 185 -----K------GQVVFAKLKTLDLSSNKLAFMGP---EF--QSAAGVTWISLRNNK 225 (487)
T ss_dssp -----E------CCCCCTTCCEEECCSSCCCEECG---GG--GGGTTCSEEECTTSC
T ss_pred -----c------ccccCCCCCEEECCCCCCCCCCH---hH--cCCCCccEEEecCCc
Confidence 0 12247788888888887754311 13 578889999888764
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.34 E-value=3.4e-08 Score=80.73 Aligned_cols=110 Identities=14% Similarity=0.238 Sum_probs=49.7
Q ss_pred ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (276)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~ 160 (276)
..+++|++|+++++ .++... ......+++|+.|+++++ .++..... ....+++|++|+++++ .++.-. ..
T Consensus 56 ~~l~~L~~L~L~~n-~l~~~~-----~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~-~~ 125 (251)
T 3m19_A 56 RGLTKLTWLNLDYN-QLQTLS-----AGVFDDLTELGTLGLANN-QLASLPLG-VFDHLTQLDKLYLGGN-QLKSLP-SG 125 (251)
T ss_dssp TTCTTCCEEECTTS-CCCCCC-----TTTTTTCTTCCEEECTTS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCCC-TT
T ss_pred cCcccCCEEECCCC-cCCccC-----HhHhccCCcCCEEECCCC-cccccChh-HhcccCCCCEEEcCCC-cCCCcC-hh
Confidence 45666666666663 333211 111123466666666663 44422111 1123566666666654 333111 01
Q ss_pred HHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCC
Q 023841 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY 202 (276)
Q Consensus 161 l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c 202 (276)
....+++|+.|+++++ .++.-... ....+++|+.|+++++
T Consensus 126 ~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 126 VFDRLTKLKELRLNTN-QLQSIPAG-AFDKLTNLQTLSLSTN 165 (251)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS
T ss_pred HhccCCcccEEECcCC-cCCccCHH-HcCcCcCCCEEECCCC
Confidence 1124556666666664 33311110 1123556666666664
No 92
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.34 E-value=1.2e-07 Score=90.60 Aligned_cols=111 Identities=16% Similarity=0.244 Sum_probs=60.1
Q ss_pred cCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCH----HHHHHHH---hhCCCCCeEeccCCCCcC
Q 023841 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISD----KGIEIIS---STCPELKVFSIYWNVRVT 154 (276)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~----~~~~~l~---~~~~~L~~L~L~~~~~l~ 154 (276)
.+++|+.|++++|.... ..-..+ ..+++|+.|+++++..++. ..+..+. ..+++|+.|+++++ .++
T Consensus 489 ~L~~L~~L~Ls~N~l~~-~iP~~l-----~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~ 561 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMT-QLPDFL-----YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE 561 (876)
T ss_dssp GCTTCCEEEEESCTTCC-SCCGGG-----GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC
T ss_pred cCCCCCEEECcCCCCCc-cChHHH-----hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCC
Confidence 67778888877753211 000111 2247777888877422554 2233332 34567777777765 444
Q ss_pred HHHHHH--HHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCC
Q 023841 155 DIGIQH--LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMI 206 (276)
Q Consensus 155 ~~~l~~--l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it 206 (276)
.+.. ....+++|+.|+++++ .++ .+. ....+++|+.|+++++ .++
T Consensus 562 --~ip~~~~l~~L~~L~~L~Ls~N-~l~--~lp-~~~~L~~L~~L~Ls~N-~l~ 608 (876)
T 4ecn_A 562 --EFPASASLQKMVKLGLLDCVHN-KVR--HLE-AFGTNVKLTDLKLDYN-QIE 608 (876)
T ss_dssp --BCCCHHHHTTCTTCCEEECTTS-CCC--BCC-CCCTTSEESEEECCSS-CCS
T ss_pred --ccCChhhhhcCCCCCEEECCCC-Ccc--cch-hhcCCCcceEEECcCC-ccc
Confidence 2222 2236777777777775 344 222 2234667777777775 444
No 93
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.33 E-value=2.5e-09 Score=90.53 Aligned_cols=195 Identities=9% Similarity=0.060 Sum_probs=105.5
Q ss_pred CCccEEecCCccCcch-hhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841 57 SLWLVIDLREMNNAGN-RLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135 (276)
Q Consensus 57 ~~~~~l~l~~~~~~~~-~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 135 (276)
..++.+++++....+. .... .+..+++|++|+++++..++...-..+ ..+++|++|+++++ .++...-..+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~--~l~~l~~L~~L~L~~~n~l~~~~p~~l-----~~l~~L~~L~Ls~n-~l~~~~p~~~ 121 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPS--SLANLPYLNFLYIGGINNLVGPIPPAI-----AKLTQLHYLYITHT-NVSGAIPDFL 121 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCG--GGGGCTTCSEEEEEEETTEESCCCGGG-----GGCTTCSEEEEEEE-CCEEECCGGG
T ss_pred ceEEEEECCCCCccCCcccCh--hHhCCCCCCeeeCCCCCcccccCChhH-----hcCCCCCEEECcCC-eeCCcCCHHH
Confidence 4677777777654421 1111 235788999999985233332111112 22588999999884 5542211122
Q ss_pred HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCC-CccEEecCCCCCCCHHHHHHHH
Q 023841 136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ-ELESLNLTRYVNMILLGLFYIW 214 (276)
Q Consensus 136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~-~L~~L~l~~c~~it~~~l~~l~ 214 (276)
..+++|++|+++++ .++...-..+ ..+++|++|+++++ .++......+. .++ +|+.|+++++ .++...-..+.
T Consensus 122 -~~l~~L~~L~Ls~N-~l~~~~p~~~-~~l~~L~~L~L~~N-~l~~~~p~~l~-~l~~~L~~L~L~~N-~l~~~~~~~~~ 195 (313)
T 1ogq_A 122 -SQIKTLVTLDFSYN-ALSGTLPPSI-SSLPNLVGITFDGN-RISGAIPDSYG-SFSKLFTSMTISRN-RLTGKIPPTFA 195 (313)
T ss_dssp -GGCTTCCEEECCSS-EEESCCCGGG-GGCTTCCEEECCSS-CCEEECCGGGG-CCCTTCCEEECCSS-EEEEECCGGGG
T ss_pred -hCCCCCCEEeCCCC-ccCCcCChHH-hcCCCCCeEECcCC-cccCcCCHHHh-hhhhcCcEEECcCC-eeeccCChHHh
Confidence 34788888888876 3332111122 36788888888886 44322112222 344 7888888886 44321111111
Q ss_pred hc---------Cc-hhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeeccee
Q 023841 215 SN---------NI-LLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK 270 (276)
Q Consensus 215 ~~---------~~-~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~ 270 (276)
.. +. .......+..++.|+.++++.+.+...... + ..+++|++|++.++.-
T Consensus 196 ~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~--~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 196 NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK---V--GLSKNLNGLDLRNNRI 256 (313)
T ss_dssp GCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG---C--CCCTTCCEEECCSSCC
T ss_pred CCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc---c--cccCCCCEEECcCCcc
Confidence 00 00 000012345677788888877776543221 2 5678888888887653
No 94
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.33 E-value=7.1e-07 Score=79.40 Aligned_cols=177 Identities=11% Similarity=0.079 Sum_probs=83.6
Q ss_pred CCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHH
Q 023841 57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS 136 (276)
Q Consensus 57 ~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 136 (276)
+.++.+++++....+.. .+..+++|++|+++++ .++... ...+++|++|+++++ .++... .
T Consensus 42 ~~L~~L~Ls~n~l~~~~-----~l~~l~~L~~L~Ls~n-~l~~~~--------~~~l~~L~~L~Ls~N-~l~~~~----~ 102 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT-----GIEKLTGLTKLICTSN-NITTLD--------LSQNTNLTYLACDSN-KLTNLD----V 102 (457)
T ss_dssp TTCCEEECCSSCCCCCT-----TGGGCTTCSEEECCSS-CCSCCC--------CTTCTTCSEEECCSS-CCSCCC----C
T ss_pred CCCCEEEccCCCcccCh-----hhcccCCCCEEEccCC-cCCeEc--------cccCCCCCEEECcCC-CCceee----c
Confidence 34566666665433221 1245666666666664 333310 123466666666663 444421 2
Q ss_pred hhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhc
Q 023841 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSN 216 (276)
Q Consensus 137 ~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~ 216 (276)
..+++|++|+++++ .++.- . ...+++|++|+++++ .++.-. ...+++|+.|++++|..++...+..+..-
T Consensus 103 ~~l~~L~~L~L~~N-~l~~l--~--~~~l~~L~~L~l~~N-~l~~l~----l~~l~~L~~L~l~~n~~~~~~~~~~l~~L 172 (457)
T 3bz5_A 103 TPLTKLTYLNCDTN-KLTKL--D--VSQNPLLTYLNCARN-TLTEID----VSHNTQLTELDCHLNKKITKLDVTPQTQL 172 (457)
T ss_dssp TTCTTCCEEECCSS-CCSCC--C--CTTCTTCCEEECTTS-CCSCCC----CTTCTTCCEEECTTCSCCCCCCCTTCTTC
T ss_pred CCCCcCCEEECCCC-cCCee--c--CCCCCcCCEEECCCC-ccceec----cccCCcCCEEECCCCCcccccccccCCcC
Confidence 33566666666654 33321 1 224556666666654 333211 12355555555555532222110000000
Q ss_pred -----CchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841 217 -----NILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 269 (276)
Q Consensus 217 -----~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 269 (276)
....++.+....++.|+.++++.+.+... . + ..+++|+.|++.++.
T Consensus 173 ~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~-~----l--~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 173 TTLDCSFNKITELDVSQNKLLNRLNCDTNNITKL-D----L--NQNIQLTFLDCSSNK 223 (457)
T ss_dssp CEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCC-C----C--TTCTTCSEEECCSSC
T ss_pred CEEECCCCccceeccccCCCCCEEECcCCcCCee-c----c--ccCCCCCEEECcCCc
Confidence 00000001234566677777766665543 1 2 567788888777653
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.32 E-value=2.1e-08 Score=79.53 Aligned_cols=12 Identities=25% Similarity=0.387 Sum_probs=6.2
Q ss_pred CCCccEEecCCC
Q 023841 191 YQELESLNLTRY 202 (276)
Q Consensus 191 ~~~L~~L~l~~c 202 (276)
+++|++|+++++
T Consensus 123 l~~L~~L~l~~N 134 (208)
T 2o6s_A 123 LTQLKDLRLYQN 134 (208)
T ss_dssp CTTCCEEECCSS
T ss_pred CCcCCEEECCCC
Confidence 455555555554
No 96
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.32 E-value=5.3e-09 Score=88.51 Aligned_cols=43 Identities=7% Similarity=-0.056 Sum_probs=31.1
Q ss_pred HcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecceecc
Q 023841 226 YHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTG 272 (276)
Q Consensus 226 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 272 (276)
...++.|+.++++.+.+..... ..+ ..+++|+.|++.++.-.|
T Consensus 240 ~~~l~~L~~L~Ls~N~l~~~~p--~~l--~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 240 VGLSKNLNGLDLRNNRIYGTLP--QGL--TQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp CCCCTTCCEEECCSSCCEECCC--GGG--GGCTTCCEEECCSSEEEE
T ss_pred ccccCCCCEEECcCCcccCcCC--hHH--hcCcCCCEEECcCCcccc
Confidence 4567899999999888753311 123 678999999999886443
No 97
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.28 E-value=1.1e-06 Score=78.18 Aligned_cols=179 Identities=11% Similarity=0.035 Sum_probs=103.1
Q ss_pred cCCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHH
Q 023841 54 SYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIE 133 (276)
Q Consensus 54 ~~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 133 (276)
...+.++.++++++..... .+..+++|++|+++++ .++... ...+++|++|+++++ .++...
T Consensus 61 ~~l~~L~~L~Ls~n~l~~~------~~~~l~~L~~L~Ls~N-~l~~~~--------~~~l~~L~~L~L~~N-~l~~l~-- 122 (457)
T 3bz5_A 61 EKLTGLTKLICTSNNITTL------DLSQNTNLTYLACDSN-KLTNLD--------VTPLTKLTYLNCDTN-KLTKLD-- 122 (457)
T ss_dssp GGCTTCSEEECCSSCCSCC------CCTTCTTCSEEECCSS-CCSCCC--------CTTCTTCCEEECCSS-CCSCCC--
T ss_pred cccCCCCEEEccCCcCCeE------ccccCCCCCEEECcCC-CCceee--------cCCCCcCCEEECCCC-cCCeec--
Confidence 3456778888887654432 2457788888888874 444321 133577888888774 555421
Q ss_pred HHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHH
Q 023841 134 IISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYI 213 (276)
Q Consensus 134 ~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l 213 (276)
...+++|++|+++++ .++.- . ...+++|+.|++++|..++.-. ...+++|+.|+++++ .++...+..+
T Consensus 123 --~~~l~~L~~L~l~~N-~l~~l---~-l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n-~l~~l~l~~l 190 (457)
T 3bz5_A 123 --VSQNPLLTYLNCARN-TLTEI---D-VSHNTQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFN-KITELDVSQN 190 (457)
T ss_dssp --CTTCTTCCEEECTTS-CCSCC---C-CTTCTTCCEEECTTCSCCCCCC----CTTCTTCCEEECCSS-CCCCCCCTTC
T ss_pred --CCCCCcCCEEECCCC-cccee---c-cccCCcCCEEECCCCCcccccc----cccCCcCCEEECCCC-ccceeccccC
Confidence 234677777777765 34331 1 2256667777776664443221 123566666666665 4443211100
Q ss_pred Hhc-----CchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841 214 WSN-----NILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 269 (276)
Q Consensus 214 ~~~-----~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 269 (276)
..- ....+..+....++.|+.++++++.+... + + ..+++|+.|++.++.
T Consensus 191 ~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~i-p----~--~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 191 KLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEI-D----V--TPLTQLTYFDCSVNP 244 (457)
T ss_dssp TTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-C----C--TTCTTCSEEECCSSC
T ss_pred CCCCEEECcCCcCCeeccccCCCCCEEECcCCccccc-C----c--cccCCCCEEEeeCCc
Confidence 000 00000111356678999999999988763 2 3 688999999998774
No 98
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.27 E-value=6.7e-07 Score=85.47 Aligned_cols=119 Identities=17% Similarity=0.161 Sum_probs=76.9
Q ss_pred cccCCCccEEeccCCCCCcHH------------HHH-HHHHHccC--CCCCccEEecCCCCCCCHHHHHHHHhhCCCCCe
Q 023841 80 IPRYRHVREINLEFAQDIEDR------------HLE-LLKTKCLG--SLQDLESLNLNGCQKISDKGIEIISSTCPELKV 144 (276)
Q Consensus 80 ~~~~~~L~~L~l~~~~~l~~~------------~~~-~i~~~~~~--~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~ 144 (276)
+..+++|+.|+++++ .++.. ... .+... .. .+++|+.|++++|. +....-.. ...+++|+.
T Consensus 444 l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~-l~f~~L~~L~~L~Ls~N~-l~~~iP~~-l~~L~~L~~ 519 (876)
T 4ecn_A 444 IQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLTDVELYNCP-NMTQLPDF-LYDLPELQS 519 (876)
T ss_dssp GGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEESCT-TCCSCCGG-GGGCSSCCE
T ss_pred HhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChh-hhhccCCCCCEEECcCCC-CCccChHH-HhCCCCCCE
Confidence 467899999999985 55541 000 11111 12 46899999999963 22211122 235899999
Q ss_pred EeccCCCCcCH-HH---HHHHH---HhCCCCcEEecCCCCCCCHHHHHH--HHhcCCCccEEecCCCCCCC
Q 023841 145 FSIYWNVRVTD-IG---IQHLV---KNCKHIIDLNLSGCKNLLDKSLQL--IADNYQELESLNLTRYVNMI 206 (276)
Q Consensus 145 L~L~~~~~l~~-~~---l~~l~---~~~~~L~~L~l~~c~~ltd~~~~~--l~~~~~~L~~L~l~~c~~it 206 (276)
|+++++..++. .. +..+. ..+++|+.|++++| .++ .+.. ....+++|+.|+++++ .++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~--~ip~~~~l~~L~~L~~L~Ls~N-~l~ 586 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE--EFPASASLQKMVKLGLLDCVHN-KVR 586 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC--BCCCHHHHTTCTTCCEEECTTS-CCC
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCC--ccCChhhhhcCCCCCEEECCCC-Ccc
Confidence 99998843765 22 33222 34569999999997 555 2322 3346899999999997 565
No 99
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.26 E-value=8.9e-08 Score=83.28 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=65.0
Q ss_pred ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (276)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~ 160 (276)
..+++|++|+++++ .+++..... ...+++|++|+++++ .++......+ ..+++|++|+++++ .++.-. ..
T Consensus 66 ~~l~~L~~L~L~~n-~i~~~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~l~-~~ 135 (390)
T 3o6n_A 66 DSFRQVELLNLNDL-QIEEIDTYA-----FAYAHTIQKLYMGFN-AIRYLPPHVF-QNVPLLTVLVLERN-DLSSLP-RG 135 (390)
T ss_dssp HHCCCCSEEECTTS-CCCEECTTT-----TTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCCCC-TT
T ss_pred cccccCcEEECCCC-cccccChhh-----ccCCCCcCEEECCCC-CCCcCCHHHh-cCCCCCCEEECCCC-ccCcCC-HH
Confidence 45778888888874 343221111 123578888888874 5544222222 34778888888876 444211 11
Q ss_pred HHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCH
Q 023841 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMIL 207 (276)
Q Consensus 161 l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~ 207 (276)
+...+++|++|+++++ .++...... ...+++|++|+++++ .++.
T Consensus 136 ~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~ 179 (390)
T 3o6n_A 136 IFHNTPKLTTLSMSNN-NLERIEDDT-FQATTSLQNLQLSSN-RLTH 179 (390)
T ss_dssp TTTTCTTCCEEECCSS-CCCBCCTTT-TSSCTTCCEEECCSS-CCSB
T ss_pred HhcCCCCCcEEECCCC-ccCccChhh-ccCCCCCCEEECCCC-cCCc
Confidence 2236778888888876 343211111 234778888888886 5554
No 100
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.25 E-value=5.6e-08 Score=81.27 Aligned_cols=177 Identities=18% Similarity=0.220 Sum_probs=100.9
Q ss_pred CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841 56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135 (276)
Q Consensus 56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 135 (276)
++.++.+++++........ -.+..+++|++|+++++ .++.... ...+++|+.|+++++ .++. +...
T Consensus 30 ~~~l~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~n-~l~~~~~-------~~~l~~L~~L~Ls~N-~l~~--l~~~ 95 (290)
T 1p9a_G 30 PKDTTILHLSENLLYTFSL---ATLMPYTRLTQLNLDRA-ELTKLQV-------DGTLPVLGTLDLSHN-QLQS--LPLL 95 (290)
T ss_dssp CTTCCEEECTTSCCSEEEG---GGGTTCTTCCEEECTTS-CCCEEEC-------CSCCTTCCEEECCSS-CCSS--CCCC
T ss_pred CCCCCEEEcCCCcCCccCH---HHhhcCCCCCEEECCCC-ccCcccC-------CCCCCcCCEEECCCC-cCCc--Cchh
Confidence 3456677777665432111 11356788888888874 4432110 134578888888884 5542 1122
Q ss_pred HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHh
Q 023841 136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWS 215 (276)
Q Consensus 136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~ 215 (276)
...+++|++|+++++ .++.-.... ...+++|++|+++++ .++.-.. ..+..+++|+.|+++++ .++...
T Consensus 96 ~~~l~~L~~L~l~~N-~l~~l~~~~-~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~l~------ 164 (290)
T 1p9a_G 96 GQTLPALTVLDVSFN-RLTSLPLGA-LRGLGELQELYLKGN-ELKTLPP-GLLTPTPKLEKLSLANN-NLTELP------ 164 (290)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCSST-TTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTS-CCSCCC------
T ss_pred hccCCCCCEEECCCC-cCcccCHHH-HcCCCCCCEEECCCC-CCCccCh-hhcccccCCCEEECCCC-cCCccC------
Confidence 345778888888876 443211111 236778888888886 4442111 11235778888888886 554210
Q ss_pred cCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841 216 NNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 269 (276)
Q Consensus 216 ~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 269 (276)
...+.+++.|+.++++.+.+... . ..+ ...++|+.+.+.+.+
T Consensus 165 -------~~~~~~l~~L~~L~L~~N~l~~i-p--~~~--~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 165 -------AGLLNGLENLDTLLLQENSLYTI-P--KGF--FGSHLLPFAFLHGNP 206 (290)
T ss_dssp -------TTTTTTCTTCCEEECCSSCCCCC-C--TTT--TTTCCCSEEECCSCC
T ss_pred -------HHHhcCcCCCCEEECCCCcCCcc-C--hhh--cccccCCeEEeCCCC
Confidence 11345677888888877776533 1 111 345678888777554
No 101
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.25 E-value=5.5e-08 Score=81.31 Aligned_cols=175 Identities=15% Similarity=0.122 Sum_probs=111.8
Q ss_pred CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841 56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135 (276)
Q Consensus 56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 135 (276)
.+.++.+++++..... +...-.++++.|+++++ .++......+ ..+++|+.|+++++ .++.....
T Consensus 9 l~~l~~l~~~~~~l~~------ip~~~~~~l~~L~L~~N-~l~~~~~~~~-----~~l~~L~~L~L~~n-~l~~~~~~-- 73 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTA------LPPDLPKDTTILHLSEN-LLYTFSLATL-----MPYTRLTQLNLDRA-ELTKLQVD-- 73 (290)
T ss_dssp STTCCEEECTTSCCSS------CCSCCCTTCCEEECTTS-CCSEEEGGGG-----TTCTTCCEEECTTS-CCCEEECC--
T ss_pred cCCccEEECCCCCCCc------CCCCCCCCCCEEEcCCC-cCCccCHHHh-----hcCCCCCEEECCCC-ccCcccCC--
Confidence 3456677776644322 22223478999999985 4443221112 34699999999994 66653221
Q ss_pred HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHh
Q 023841 136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWS 215 (276)
Q Consensus 136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~ 215 (276)
..+++|+.|+++++ .++. +......+++|++|+++++ .++.-.. .....+++|+.|+++++ .++...
T Consensus 74 -~~l~~L~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~l~~N-~l~~l~~-~~~~~l~~L~~L~L~~N-~l~~~~------ 140 (290)
T 1p9a_G 74 -GTLPVLGTLDLSHN-QLQS--LPLLGQTLPALTVLDVSFN-RLTSLPL-GALRGLGELQELYLKGN-ELKTLP------ 140 (290)
T ss_dssp -SCCTTCCEEECCSS-CCSS--CCCCTTTCTTCCEEECCSS-CCCCCCS-STTTTCTTCCEEECTTS-CCCCCC------
T ss_pred -CCCCcCCEEECCCC-cCCc--CchhhccCCCCCEEECCCC-cCcccCH-HHHcCCCCCCEEECCCC-CCCccC------
Confidence 46889999999986 4541 2222346889999999996 4542111 11235889999999997 565311
Q ss_pred cCchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841 216 NNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 269 (276)
Q Consensus 216 ~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 269 (276)
...+.++++|+.++++.+.+... .. ..+ ..+++|+.|++.++.
T Consensus 141 -------~~~~~~l~~L~~L~L~~N~l~~l-~~-~~~--~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 141 -------PGLLTPTPKLEKLSLANNNLTEL-PA-GLL--NGLENLDTLLLQENS 183 (290)
T ss_dssp -------TTTTTTCTTCCEEECTTSCCSCC-CT-TTT--TTCTTCCEEECCSSC
T ss_pred -------hhhcccccCCCEEECCCCcCCcc-CH-HHh--cCcCCCCEEECCCCc
Confidence 11345778999999988887644 11 122 568899999998764
No 102
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.24 E-value=5.6e-08 Score=82.72 Aligned_cols=35 Identities=9% Similarity=-0.005 Sum_probs=21.9
Q ss_pred CCccEEecCCccCcchhhHHHhccccCCCccEEeccCC
Q 023841 57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFA 94 (276)
Q Consensus 57 ~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~ 94 (276)
+.++.++++++...... .-.+..+++|++|+++++
T Consensus 123 ~~L~~L~l~~n~i~~~~---~~~~~~l~~L~~L~l~~n 157 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVP---KGVFSGLRNMNCIEMGGN 157 (332)
T ss_dssp TTCCEEECCSSCCCCCC---SGGGSSCSSCCEEECCSC
T ss_pred ccCCEEECCCCccCccC---HhHhCCCccCCEEECCCC
Confidence 56778888776543211 111356788888888874
No 103
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.20 E-value=7.9e-08 Score=79.53 Aligned_cols=137 Identities=13% Similarity=0.160 Sum_probs=88.6
Q ss_pred CCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHH
Q 023841 84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK 163 (276)
Q Consensus 84 ~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~ 163 (276)
++|++|+++++ .++......+ ..+++|++|+++++ .++...-..+ ..+++|++|+++++ .++......+ .
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~~-----~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~-~ 97 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYSF-----FSFPELQVLDLSRC-EIQTIEDGAY-QSLSHLSTLILTGN-PIQSLALGAF-S 97 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTTT-----TTCTTCSEEECTTC-CCCEECTTTT-TTCTTCCEEECTTC-CCCEECTTTT-T
T ss_pred CCccEEECCCC-cccccCHhHh-----ccccCCcEEECCCC-cCCccCHHHc-cCCcCCCEEECCCC-ccCccChhhh-c
Confidence 57999999985 4443221122 33689999999995 6654322222 34889999999987 4443222222 3
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCC
Q 023841 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGG 243 (276)
Q Consensus 164 ~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~ 243 (276)
.+++|++|+++++ .++...... ...+++|++|+++++ .++...+. ..+.++++|+.++++++.+.
T Consensus 98 ~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~l~------------~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 98 GLSSLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHN-LIQSFKLP------------EYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TCTTCCEEECTTS-CCCCSTTCC-CTTCTTCCEEECCSS-CCCCCCCC------------GGGGGCTTCCEEECCSSCCC
T ss_pred CCccccEEECCCC-CccccCchh-cccCCCCCEEECcCC-ccceecCc------------hhhccCCCCCEEECCCCCCC
Confidence 6889999999987 343211111 235899999999997 55542111 14567789999999888765
Q ss_pred CC
Q 023841 244 DH 245 (276)
Q Consensus 244 ~~ 245 (276)
..
T Consensus 163 ~~ 164 (276)
T 2z62_A 163 SI 164 (276)
T ss_dssp EE
T ss_pred cC
Confidence 43
No 104
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.20 E-value=9.6e-07 Score=79.60 Aligned_cols=161 Identities=14% Similarity=0.137 Sum_probs=102.8
Q ss_pred cCCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcH-HHHHHHHHHccCCCCCccEEecCCCCCCCHHHH
Q 023841 54 SYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIED-RHLELLKTKCLGSLQDLESLNLNGCQKISDKGI 132 (276)
Q Consensus 54 ~~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~-~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~ 132 (276)
...+.++.++++++...+... -.+..+++|+.|+++++ .++. ..+.... ..+++|+.|+++++ .++...-
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~----~~l~~L~~L~Ls~N-~l~~~l~ 391 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVF---ENCGHLTELETLILQMN-QLKELSKIAEMT----TQMKSLQQLDISQN-SVSYDEK 391 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTT---TTCCCCSSCCEEECCSS-CCCBHHHHHHHH----TTCTTCCEEECCSS-CCBCCGG
T ss_pred hhCCcccEEEeECCccChhhh---hhhccCCCCCEEEccCC-ccCccccchHHH----hhCCCCCEEECCCC-cCCcccc
Confidence 345677888888776443111 12367899999999985 5553 2222222 23599999999995 5554111
Q ss_pred HHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhC-CCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHH
Q 023841 133 EIISSTCPELKVFSIYWNVRVTDIGIQHLVKNC-KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLF 211 (276)
Q Consensus 133 ~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~-~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~ 211 (276)
......+++|++|+++++ .++... .... ++|+.|++++| .++ .+..-...+++|+.|++++| .++.. .
T Consensus 392 ~~~~~~l~~L~~L~Ls~N-~l~~~~----~~~l~~~L~~L~Ls~N-~l~--~ip~~~~~l~~L~~L~L~~N-~l~~l--~ 460 (520)
T 2z7x_B 392 KGDCSWTKSLLSLNMSSN-ILTDTI----FRCLPPRIKVLDLHSN-KIK--SIPKQVVKLEALQELNVASN-QLKSV--P 460 (520)
T ss_dssp GCSCCCCTTCCEEECCSS-CCCGGG----GGSCCTTCCEEECCSS-CCC--CCCGGGGGCTTCCEEECCSS-CCCCC--C
T ss_pred cchhccCccCCEEECcCC-CCCcch----hhhhcccCCEEECCCC-ccc--ccchhhhcCCCCCEEECCCC-cCCcc--C
Confidence 112334789999999987 565432 2233 68999999997 555 22221226899999999997 56531 1
Q ss_pred HHHhcCchhhHHHHHcCCCccceecccccCCCCC
Q 023841 212 YIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDH 245 (276)
Q Consensus 212 ~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~ 245 (276)
. . .+..++.|+.++++.+.+...
T Consensus 461 ~----------~-~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 461 D----------G-IFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp T----------T-TTTTCTTCCEEECCSSCBCCC
T ss_pred H----------H-HhccCCcccEEECcCCCCccc
Confidence 1 0 245678888999988876654
No 105
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.19 E-value=1.8e-08 Score=81.70 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=25.2
Q ss_pred HcCC-CccceecccccCCCCCcceeEEEeeccCCCCceeeeeccee
Q 023841 226 YHGI-RFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK 270 (276)
Q Consensus 226 ~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~ 270 (276)
+.++ +.|+.++++.+.+... . ...+++|+.|.+.+++.
T Consensus 200 ~~~l~~~L~~L~l~~N~l~~l-~------~~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 200 FGGVYSGPSLLDVSQTSVTAL-P------SKGLEHLKELIARNTWT 238 (239)
T ss_dssp TTTCSBCCSEEECTTCCCCCC-C------CTTCTTCSEEECTTC--
T ss_pred hhccccCCcEEECCCCccccC-C------hhHhccCceeeccCccC
Confidence 4556 7788888877776533 1 13678888888888775
No 106
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.19 E-value=2.6e-07 Score=71.21 Aligned_cols=131 Identities=15% Similarity=0.185 Sum_probs=69.7
Q ss_pred CCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHH
Q 023841 55 YPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEI 134 (276)
Q Consensus 55 ~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 134 (276)
.+..++.++++++...... .+. ...++|+.|+++++ .+++. . ....+++|+.|+++++ .++...- .
T Consensus 17 ~~~~L~~L~l~~n~l~~i~---~~~-~~~~~L~~L~Ls~N-~l~~~------~-~l~~l~~L~~L~Ls~N-~l~~~~~-~ 82 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIE---NLG-ATLDQFDAIDFSDN-EIRKL------D-GFPLLRRLKTLLVNNN-RICRIGE-G 82 (176)
T ss_dssp CTTSCEEEECTTSCCCSCC---CGG-GGTTCCSEEECCSS-CCCEE------C-CCCCCSSCCEEECCSS-CCCEECS-C
T ss_pred CcCCceEEEeeCCCCchhH---Hhh-hcCCCCCEEECCCC-CCCcc------c-ccccCCCCCEEECCCC-cccccCc-c
Confidence 3556677777766443211 111 23347777777774 44431 1 1234577777777774 5553211 1
Q ss_pred HHhhCCCCCeEeccCCCCcCHHH-HHHHHHhCCCCcEEecCCCCCCCH--HHHHHHHhcCCCccEEecCCC
Q 023841 135 ISSTCPELKVFSIYWNVRVTDIG-IQHLVKNCKHIIDLNLSGCKNLLD--KSLQLIADNYQELESLNLTRY 202 (276)
Q Consensus 135 l~~~~~~L~~L~L~~~~~l~~~~-l~~l~~~~~~L~~L~l~~c~~ltd--~~~~~l~~~~~~L~~L~l~~c 202 (276)
+...+++|+.|+++++ .+++-. +..+ ..+++|+.|+++++ .+++ ..-..+...+|+|+.|+++++
T Consensus 83 ~~~~l~~L~~L~L~~N-~i~~~~~~~~l-~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 83 LDQALPDLTELILTNN-SLVELGDLDPL-ASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp HHHHCTTCCEEECCSC-CCCCGGGGGGG-GGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred hhhcCCCCCEEECCCC-cCCcchhhHhh-hcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 2234777777777766 443311 1222 36777777777775 3331 111123345777777777765
No 107
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.17 E-value=6.3e-08 Score=90.28 Aligned_cols=157 Identities=14% Similarity=0.145 Sum_probs=98.7
Q ss_pred CCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHH
Q 023841 84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK 163 (276)
Q Consensus 84 ~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~ 163 (276)
+++++|+++++ .++......+ ..+++|++|+++++ .++...-..+ ..+++|++|+++++ .++.-.-..+ .
T Consensus 25 ~~l~~L~Ls~n-~l~~~~~~~~-----~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~l~~~~~-~ 94 (680)
T 1ziw_A 25 TNITVLNLTHN-QLRRLPAANF-----TRYSQLTSLDVGFN-TISKLEPELC-QKLPMLKVLNLQHN-ELSQLSDKTF-A 94 (680)
T ss_dssp TTCSEEECCSS-CCCCCCGGGG-----GGGTTCSEEECCSS-CCCCCCTTHH-HHCTTCCEEECCSS-CCCCCCTTTT-T
T ss_pred CCCcEEECCCC-CCCCcCHHHH-----hCCCcCcEEECCCC-ccCccCHHHH-hcccCcCEEECCCC-ccCccChhhh-c
Confidence 68999999985 4433211112 22489999999985 5554332333 34899999999987 4542111122 3
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCC
Q 023841 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGG 243 (276)
Q Consensus 164 ~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~ 243 (276)
++++|++|+++++ .++.-.... ...+++|++|++++| .++.... ..+..+++|+.++++.+.+.
T Consensus 95 ~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~-------------~~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 95 FCTNLTELHLMSN-SIQKIKNNP-FVKQKNLITLDLSHN-GLSSTKL-------------GTQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp TCTTCSEEECCSS-CCCCCCSCT-TTTCTTCCEEECCSS-CCSCCCC-------------CSSSCCTTCCEEECCSSCCC
T ss_pred cCCCCCEEECCCC-ccCccChhH-ccccCCCCEEECCCC-cccccCc-------------hhhcccccCCEEEccCCccc
Confidence 7899999999997 443211111 235899999999997 4543210 02456889999999888765
Q ss_pred CCcceeEEEeeccCCCCceeeeecc
Q 023841 244 DHLAFAYIIETNTYKHGKEKHIIET 268 (276)
Q Consensus 244 ~~~~~~~~~~~~~~~~L~~l~~~~~ 268 (276)
....- .+....+++|+.|++..+
T Consensus 159 ~~~~~--~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 159 ALKSE--ELDIFANSSLKKLELSSN 181 (680)
T ss_dssp CBCHH--HHGGGTTCEESEEECTTC
T ss_pred ccCHH--HhhccccccccEEECCCC
Confidence 44111 111124578888888766
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.12 E-value=2.2e-07 Score=73.52 Aligned_cols=112 Identities=11% Similarity=0.088 Sum_probs=63.6
Q ss_pred CCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCc
Q 023841 139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNI 218 (276)
Q Consensus 139 ~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~ 218 (276)
+++|++|+++++ .++.-. ......+++|++|+++++ .++.-.. .....+++|++|+++++ .++...
T Consensus 51 l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~--------- 116 (208)
T 2o6s_A 51 LTSLTQLYLGGN-KLQSLP-NGVFNKLTSLTYLNLSTN-QLQSLPN-GVFDKLTQLKELALNTN-QLQSLP--------- 116 (208)
T ss_dssp CTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCC---------
T ss_pred cccCcEEECCCC-ccCccC-hhhcCCCCCcCEEECCCC-cCCccCH-hHhcCccCCCEEEcCCC-cCcccC---------
Confidence 455566655544 333110 111235677777777775 3431111 11235788999999886 555211
Q ss_pred hhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecceecc
Q 023841 219 LLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTG 272 (276)
Q Consensus 219 ~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 272 (276)
...+..+++|+.+++..+.+..... ..+ ..+++|+.|++.+++-.+
T Consensus 117 ----~~~~~~l~~L~~L~l~~N~l~~~~~--~~~--~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 117 ----DGVFDKLTQLKDLRLYQNQLKSVPD--GVF--DRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp ----TTTTTTCTTCCEEECCSSCCSCCCT--TTT--TTCTTCCEEECCSCCBCC
T ss_pred ----HhHhccCCcCCEEECCCCccceeCH--HHh--ccCCCccEEEecCCCeec
Confidence 1124567888899998877654311 112 567888888888765443
No 109
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.10 E-value=2.2e-07 Score=85.45 Aligned_cols=135 Identities=13% Similarity=0.187 Sum_probs=82.4
Q ss_pred CCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHH
Q 023841 84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK 163 (276)
Q Consensus 84 ~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~ 163 (276)
+++++|++++ +.++.-. ...-..+++|++|++++| .++.-.-.+ ...+++|++|+|+++ .++.-... ...
T Consensus 52 ~~~~~LdLs~-N~i~~l~-----~~~f~~l~~L~~L~Ls~N-~i~~i~~~~-f~~L~~L~~L~Ls~N-~l~~l~~~-~f~ 121 (635)
T 4g8a_A 52 FSTKNLDLSF-NPLRHLG-----SYSFFSFPELQVLDLSRC-EIQTIEDGA-YQSLSHLSTLILTGN-PIQSLALG-AFS 121 (635)
T ss_dssp TTCCEEECTT-SCCCEEC-----TTTTTTCTTCCEEECTTC-CCCEECTTT-TTTCTTCCEEECTTC-CCCEECGG-GGT
T ss_pred cCCCEEEeeC-CCCCCCC-----HHHHhCCCCCCEEECCCC-cCCCcChhH-hcCCCCCCEEEccCC-cCCCCCHH-Hhc
Confidence 3799999998 4554311 111134689999999985 554321111 245889999999987 44421111 224
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCC
Q 023841 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGG 243 (276)
Q Consensus 164 ~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~ 243 (276)
++++|++|++++| .++.-.- .....+++|++|+++++ .++...+. .....++.|+.++++.+.+.
T Consensus 122 ~L~~L~~L~Ls~N-~l~~l~~-~~~~~L~~L~~L~Ls~N-~l~~~~~~------------~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 122 GLSSLQKLVAVET-NLASLEN-FPIGHLKTLKELNVAHN-LIQSFKLP------------EYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp TCTTCCEEECTTS-CCCCSTT-CCCTTCTTCCEEECCSS-CCCCCCCC------------GGGGGCTTCCEEECCSSCCC
T ss_pred CCCCCCEEECCCC-cCCCCCh-hhhhcCcccCeeccccC-ccccCCCc------------hhhccchhhhhhcccCcccc
Confidence 7889999999987 4432110 01235788999999986 44332111 13456778888888877654
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.09 E-value=2.6e-07 Score=74.42 Aligned_cols=152 Identities=14% Similarity=0.129 Sum_probs=89.1
Q ss_pred ccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhh
Q 023841 59 WLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST 138 (276)
Q Consensus 59 ~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 138 (276)
|..++.++.... .+.....++|+.|+++++ .++...-. ....+++|+.|+++++ .++.... .....
T Consensus 21 ~~~v~c~~~~l~------~ip~~~~~~L~~L~Ls~n-~i~~~~~~-----~~~~l~~L~~L~L~~N-~l~~i~~-~~~~~ 86 (229)
T 3e6j_A 21 GTTVDCRSKRHA------SVPAGIPTNAQILYLHDN-QITKLEPG-----VFDSLINLKELYLGSN-QLGALPV-GVFDS 86 (229)
T ss_dssp TTEEECTTSCCS------SCCSCCCTTCSEEECCSS-CCCCCCTT-----TTTTCTTCCEEECCSS-CCCCCCT-TTTTT
T ss_pred CCEeEccCCCcC------ccCCCCCCCCCEEEcCCC-ccCccCHH-----HhhCccCCcEEECCCC-CCCCcCh-hhccc
Confidence 566666554322 122234578999999984 44431111 1134588999999984 5543211 12245
Q ss_pred CCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCc
Q 023841 139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNI 218 (276)
Q Consensus 139 ~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~ 218 (276)
+++|+.|+|+++ .++.-. ......+++|+.|+++++ .++ .+..-...+++|+.|+++++ .++...
T Consensus 87 l~~L~~L~Ls~N-~l~~l~-~~~~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~L~~N-~l~~~~--------- 151 (229)
T 3e6j_A 87 LTQLTVLDLGTN-QLTVLP-SAVFDRLVHLKELFMCCN-KLT--ELPRGIERLTHLTHLALDQN-QLKSIP--------- 151 (229)
T ss_dssp CTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCC--SCCTTGGGCTTCSEEECCSS-CCCCCC---------
T ss_pred CCCcCEEECCCC-cCCccC-hhHhCcchhhCeEeccCC-ccc--ccCcccccCCCCCEEECCCC-cCCccC---------
Confidence 788999999876 454211 112236788999999886 454 11111245788999998886 554211
Q ss_pred hhhHHHHHcCCCccceecccccCCC
Q 023841 219 LLMSEFIYHGIRFFQAVQINSSNGG 243 (276)
Q Consensus 219 ~~l~~~~~~~~~~L~~l~l~~~~~~ 243 (276)
...+..++.|+.+++..+.+.
T Consensus 152 ----~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 152 ----HGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp ----TTTTTTCTTCCEEECTTSCBC
T ss_pred ----HHHHhCCCCCCEEEeeCCCcc
Confidence 013456777888888777654
No 111
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.09 E-value=3.6e-06 Score=64.65 Aligned_cols=138 Identities=16% Similarity=0.205 Sum_probs=91.1
Q ss_pred ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (276)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~ 160 (276)
..+++|++|+++++ .++. +..+... .++|+.|+++++ .++.- . ....+++|+.|+++++ .++.-. ..
T Consensus 16 ~~~~~L~~L~l~~n-~l~~--i~~~~~~----~~~L~~L~Ls~N-~l~~~--~-~l~~l~~L~~L~Ls~N-~l~~~~-~~ 82 (176)
T 1a9n_A 16 TNAVRDRELDLRGY-KIPV--IENLGAT----LDQFDAIDFSDN-EIRKL--D-GFPLLRRLKTLLVNNN-RICRIG-EG 82 (176)
T ss_dssp ECTTSCEEEECTTS-CCCS--CCCGGGG----TTCCSEEECCSS-CCCEE--C-CCCCCSSCCEEECCSS-CCCEEC-SC
T ss_pred CCcCCceEEEeeCC-CCch--hHHhhhc----CCCCCEEECCCC-CCCcc--c-ccccCCCCCEEECCCC-cccccC-cc
Confidence 56889999999985 5542 1222222 359999999995 77763 2 2345889999999987 555321 12
Q ss_pred HHHhCCCCcEEecCCCCCCCHHH-HHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccc
Q 023841 161 LVKNCKHIIDLNLSGCKNLLDKS-LQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINS 239 (276)
Q Consensus 161 l~~~~~~L~~L~l~~c~~ltd~~-~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~ 239 (276)
+...+++|+.|+++++ .+++-. +..+ ..+++|+.|+++++ .+++..- .+......++.|+.+++..
T Consensus 83 ~~~~l~~L~~L~L~~N-~i~~~~~~~~l-~~l~~L~~L~l~~N-~i~~~~~----------~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 83 LDQALPDLTELILTNN-SLVELGDLDPL-ASLKSLTYLCILRN-PVTNKKH----------YRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp HHHHCTTCCEEECCSC-CCCCGGGGGGG-GGCTTCCEEECCSS-GGGGSTT----------HHHHHHHHCTTCSEETTEE
T ss_pred hhhcCCCCCEEECCCC-cCCcchhhHhh-hcCCCCCEEEecCC-CCCCcHh----------HHHHHHHHCCccceeCCCc
Confidence 3347899999999997 555322 2223 36899999999997 4543211 1122456678888888866
Q ss_pred cCCCC
Q 023841 240 SNGGD 244 (276)
Q Consensus 240 ~~~~~ 244 (276)
+...+
T Consensus 150 n~~~~ 154 (176)
T 1a9n_A 150 VKLKE 154 (176)
T ss_dssp CCHHH
T ss_pred CCHHH
Confidence 65443
No 112
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.09 E-value=3e-07 Score=84.54 Aligned_cols=136 Identities=18% Similarity=0.171 Sum_probs=87.4
Q ss_pred CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841 56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135 (276)
Q Consensus 56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 135 (276)
|...+.++++......-. .-.+..+++|++|+++++ .++. +....-..+++|++|+++++ .++.-....
T Consensus 51 p~~~~~LdLs~N~i~~l~---~~~f~~l~~L~~L~Ls~N-~i~~-----i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~- 119 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLG---SYSFFSFPELQVLDLSRC-EIQT-----IEDGAYQSLSHLSTLILTGN-PIQSLALGA- 119 (635)
T ss_dssp CTTCCEEECTTSCCCEEC---TTTTTTCTTCCEEECTTC-CCCE-----ECTTTTTTCTTCCEEECTTC-CCCEECGGG-
T ss_pred CcCCCEEEeeCCCCCCCC---HHHHhCCCCCCEEECCCC-cCCC-----cChhHhcCCCCCCEEEccCC-cCCCCCHHH-
Confidence 457789999987644311 122468899999999986 3432 11111234689999999995 665432222
Q ss_pred HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCC
Q 023841 136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMI 206 (276)
Q Consensus 136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it 206 (276)
...+++|++|+++++ .++.-.-.. ..++++|++|+++++ .++...+......+++|++|+++++ .++
T Consensus 120 f~~L~~L~~L~Ls~N-~l~~l~~~~-~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~l~ 186 (635)
T 4g8a_A 120 FSGLSSLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQ 186 (635)
T ss_dssp GTTCTTCCEEECTTS-CCCCSTTCC-CTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCC
T ss_pred hcCCCCCCEEECCCC-cCCCCChhh-hhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCc-ccc
Confidence 245899999999987 444211111 247889999999996 4443222233446899999999997 454
No 113
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.06 E-value=1.9e-07 Score=79.36 Aligned_cols=190 Identities=13% Similarity=0.093 Sum_probs=85.3
Q ss_pred CCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHH
Q 023841 57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS 136 (276)
Q Consensus 57 ~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 136 (276)
+.++.++++++...... .-.+..+++|++|+++++ .++...-.. ...+++|++|+++++ .++.-..
T Consensus 54 ~~l~~L~l~~n~i~~~~---~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~~l~~L~~L~L~~n-~l~~l~~---- 119 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELR---KDDFKGLQHLYALVLVNN-KISKIHEKA-----FSPLRKLQKLYISKN-HLVEIPP---- 119 (332)
T ss_dssp TTCCEEECCSSCCCEEC---TTTTTTCTTCCEEECCSS-CCCEECGGG-----STTCTTCCEEECCSS-CCCSCCS----
T ss_pred CCCeEEECCCCcCCccC---HhHhhCCCCCcEEECCCC-ccCccCHhH-----hhCcCCCCEEECCCC-cCCccCc----
Confidence 34566666655432211 011246677777777764 333211111 123467777777763 4432110
Q ss_pred hhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHH-HHhcCCCccEEecCCCCCCCHHH------
Q 023841 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQL-IADNYQELESLNLTRYVNMILLG------ 209 (276)
Q Consensus 137 ~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~-l~~~~~~L~~L~l~~c~~it~~~------ 209 (276)
...++|++|+++++ .++.-.. .....+++|++|+++++ .+++.++.. ....+ +|+.|+++++ .++...
T Consensus 120 ~~~~~L~~L~l~~n-~i~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~~~ 194 (332)
T 2ft3_A 120 NLPSSLVELRIHDN-RIRKVPK-GVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKDLPET 194 (332)
T ss_dssp SCCTTCCEEECCSS-CCCCCCS-GGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSSSCSS
T ss_pred cccccCCEEECCCC-ccCccCH-hHhCCCccCCEEECCCC-ccccCCCCcccccCC-ccCEEECcCC-CCCccCccccCC
Confidence 11256777777654 3332111 11235667777777765 333211110 01112 4555555554 222200
Q ss_pred HHHHHh-cC-chhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841 210 LFYIWS-NN-ILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 269 (276)
Q Consensus 210 l~~l~~-~~-~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 269 (276)
+..+.- ++ ........+.+++.|+.++++++.+..... . .+ ..+++|++|++.++.
T Consensus 195 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~-~~--~~l~~L~~L~L~~N~ 252 (332)
T 2ft3_A 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN-G-SL--SFLPTLRELHLDNNK 252 (332)
T ss_dssp CSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT-T-GG--GGCTTCCEEECCSSC
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh-h-Hh--hCCCCCCEEECCCCc
Confidence 000000 00 000000134556777777777776654421 1 12 567888888887763
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.06 E-value=2.1e-07 Score=74.51 Aligned_cols=135 Identities=16% Similarity=0.201 Sum_probs=78.2
Q ss_pred CCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHH
Q 023841 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV 162 (276)
Q Consensus 83 ~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~ 162 (276)
.++++.|+++++ .++... ......+++|+.|+++++ .++...-..+ ..+++|++|+|+++ .++.-. ..+.
T Consensus 31 ~~~l~~L~l~~n-~i~~i~-----~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~-~~l~~L~~L~Ls~N-~l~~l~-~~~f 100 (220)
T 2v9t_B 31 PETITEIRLEQN-TIKVIP-----PGAFSPYKKLRRIDLSNN-QISELAPDAF-QGLRSLNSLVLYGN-KITELP-KSLF 100 (220)
T ss_dssp CTTCCEEECCSS-CCCEEC-----TTSSTTCTTCCEEECCSS-CCCEECTTTT-TTCSSCCEEECCSS-CCCCCC-TTTT
T ss_pred CcCCCEEECCCC-cCCCcC-----HhHhhCCCCCCEEECCCC-cCCCcCHHHh-hCCcCCCEEECCCC-cCCccC-HhHc
Confidence 368899999884 443211 111234588999999884 5554221222 34788888888876 444211 1122
Q ss_pred HhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCC
Q 023841 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNG 242 (276)
Q Consensus 163 ~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~ 242 (276)
.++++|+.|+++++ .++...... ...+++|+.|+++++ .++... ...+..++.|+.+++..+.+
T Consensus 101 ~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~-------------~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 101 EGLFSLQLLLLNAN-KINCLRVDA-FQDLHNLNLLSLYDN-KLQTIA-------------KGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCSCCC-------------TTTTTTCTTCCEEECCSSCE
T ss_pred cCCCCCCEEECCCC-CCCEeCHHH-cCCCCCCCEEECCCC-cCCEEC-------------HHHHhCCCCCCEEEeCCCCc
Confidence 36778888888886 444221111 224778888888886 454321 01244567777777766664
Q ss_pred C
Q 023841 243 G 243 (276)
Q Consensus 243 ~ 243 (276)
.
T Consensus 165 ~ 165 (220)
T 2v9t_B 165 I 165 (220)
T ss_dssp E
T ss_pred C
Confidence 3
No 115
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.06 E-value=8.3e-07 Score=82.27 Aligned_cols=178 Identities=12% Similarity=0.088 Sum_probs=94.0
Q ss_pred cccCCCccEEeccCCCCCcHH-------------HHHHHHHHccC--CCCCccEEecCCCCCCCHHHHHHHHhhCCCCCe
Q 023841 80 IPRYRHVREINLEFAQDIEDR-------------HLELLKTKCLG--SLQDLESLNLNGCQKISDKGIEIISSTCPELKV 144 (276)
Q Consensus 80 ~~~~~~L~~L~l~~~~~l~~~-------------~~~~i~~~~~~--~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~ 144 (276)
+..+++|++|+++++ .++.. ....+... .. .+++|++|++++| .+....-..+ ..+++|++
T Consensus 202 l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n-~l~~~~p~~l-~~l~~L~~ 277 (636)
T 4eco_A 202 VMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNC-PNLTKLPTFL-KALPEMQL 277 (636)
T ss_dssp GGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECC-TTCSSCCTTT-TTCSSCCE
T ss_pred HhcccCCCEEECcCC-ccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCC-cCCccChHHH-hcCCCCCE
Confidence 356788888888875 45541 11112111 12 4578888888886 3222111112 34778888
Q ss_pred EeccCCCCcCH-HHHHHHH-----HhCCCCcEEecCCCCCCCHHHHHH--HHhcCCCccEEecCCCCCCC-HHHHHHHHh
Q 023841 145 FSIYWNVRVTD-IGIQHLV-----KNCKHIIDLNLSGCKNLLDKSLQL--IADNYQELESLNLTRYVNMI-LLGLFYIWS 215 (276)
Q Consensus 145 L~L~~~~~l~~-~~l~~l~-----~~~~~L~~L~l~~c~~ltd~~~~~--l~~~~~~L~~L~l~~c~~it-~~~l~~l~~ 215 (276)
|+++++..++. ..-..+. ..+++|++|++++| .++ .+.. ....+++|+.|+++++ .++ .-. .+..
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~--~ip~~~~l~~l~~L~~L~L~~N-~l~g~ip--~~~~ 351 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK--TFPVETSLQKMKKLGMLECLYN-QLEGKLP--AFGS 351 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS--SCCCHHHHTTCTTCCEEECCSC-CCEEECC--CCEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCC--ccCchhhhccCCCCCEEeCcCC-cCccchh--hhCC
Confidence 88888743665 3323333 13478888888886 454 2222 2335778888888886 444 211 1100
Q ss_pred ----------cCchhhHHHHHcCCCc-cceecccccCCCCCcceeEEEeeccCCCCceeeeeccee
Q 023841 216 ----------NNILLMSEFIYHGIRF-FQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK 270 (276)
Q Consensus 216 ----------~~~~~l~~~~~~~~~~-L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~ 270 (276)
.+........+.+++. |+.++++.+.+... . ..+....+++|+.|++..+.-
T Consensus 352 l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~l-p--~~~~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 352 EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI-P--NIFDAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp EEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSC-C--SCCCTTCSSCEEEEECCSSCT
T ss_pred CCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCccc-c--hhhhhcccCccCEEECcCCcC
Confidence 0000000012344556 77777777766522 1 222112345788888877653
No 116
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.04 E-value=2e-08 Score=81.42 Aligned_cols=181 Identities=9% Similarity=0.087 Sum_probs=107.1
Q ss_pred CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841 56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135 (276)
Q Consensus 56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 135 (276)
+..++.+++++........ -.+..+++|++|+++++..++.-. ......+++|++|++++|+.++...-..
T Consensus 30 ~~~l~~L~l~~n~l~~i~~---~~~~~l~~L~~L~l~~n~~l~~i~-----~~~f~~l~~L~~L~l~~~n~l~~i~~~~- 100 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPS---HAFSNLPNISRIYVSIDVTLQQLE-----SHSFYNLSKVTHIEIRNTRNLTYIDPDA- 100 (239)
T ss_dssp CTTCCEEEEESCCCSEECT---TTTTTCTTCCEEEEECCSSCCEEC-----TTTEESCTTCCEEEEEEETTCCEECTTS-
T ss_pred CCcccEEEEeCCcceEECH---HHccCCCCCcEEeCCCCCCcceeC-----HhHcCCCcCCcEEECCCCCCeeEcCHHH-
Confidence 3466778887765432111 123578899999999863243211 1111346899999999755665422111
Q ss_pred HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCc---EEecCCCCCCCHHHHHHHHhcCCCcc-EEecCCCCCCCHHHHH
Q 023841 136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHII---DLNLSGCKNLLDKSLQLIADNYQELE-SLNLTRYVNMILLGLF 211 (276)
Q Consensus 136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~---~L~l~~c~~ltd~~~~~l~~~~~~L~-~L~l~~c~~it~~~l~ 211 (276)
...+++|++|+++++ .++. +.. ...+++|+ .|+++++..++.-.... ...+++|+ .|+++++ .++.-.-
T Consensus 101 f~~l~~L~~L~l~~n-~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~-~~~l~~L~~~L~l~~n-~l~~i~~- 173 (239)
T 2xwt_C 101 LKELPLLKFLGIFNT-GLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNA-FQGLCNETLTLKLYNN-GFTSVQG- 173 (239)
T ss_dssp EECCTTCCEEEEEEE-CCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTT-TTTTBSSEEEEECCSC-CCCEECT-
T ss_pred hCCCCCCCEEeCCCC-CCcc--ccc-cccccccccccEEECCCCcchhhcCccc-ccchhcceeEEEcCCC-CCcccCH-
Confidence 234889999999876 3432 212 23677777 99999864554211111 23578899 9999986 5543110
Q ss_pred HHHhcCchhhHHHHHcCCCccceecccccC-CCCCcceeEEEeeccC-CCCceeeeecce
Q 023841 212 YIWSNNILLMSEFIYHGIRFFQAVQINSSN-GGDHLAFAYIIETNTY-KHGKEKHIIETI 269 (276)
Q Consensus 212 ~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~~-~~L~~l~~~~~~ 269 (276)
..+.+ +.|+.+++..+. +... .. ..+ ..+ ++|+.|++.++.
T Consensus 174 ------------~~~~~-~~L~~L~L~~n~~l~~i-~~-~~~--~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 174 ------------YAFNG-TKLDAVYLNKNKYLTVI-DK-DAF--GGVYSGPSLLDVSQTS 216 (239)
T ss_dssp ------------TTTTT-CEEEEEECTTCTTCCEE-CT-TTT--TTCSBCCSEEECTTCC
T ss_pred ------------hhcCC-CCCCEEEcCCCCCcccC-CH-HHh--hccccCCcEEECCCCc
Confidence 02233 678888888773 5422 11 112 466 899999988753
No 117
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.01 E-value=3.3e-07 Score=84.94 Aligned_cols=35 Identities=11% Similarity=-0.080 Sum_probs=17.0
Q ss_pred cCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecc
Q 023841 227 HGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIET 268 (276)
Q Consensus 227 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~ 268 (276)
..++.|+.++++++.++.. +. .-+++|+.|++.++
T Consensus 563 ~~l~~L~~L~Ls~N~l~~i-p~------~~~~~L~~L~Ls~N 597 (636)
T 4eco_A 563 TLCPSLTQLQIGSNDIRKV-NE------KITPNISVLDIKDN 597 (636)
T ss_dssp GGCSSCCEEECCSSCCCBC-CS------CCCTTCCEEECCSC
T ss_pred hcCCCCCEEECCCCcCCcc-CH------hHhCcCCEEECcCC
Confidence 3455555666655554222 11 11256666666655
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.00 E-value=3e-07 Score=73.57 Aligned_cols=154 Identities=10% Similarity=0.062 Sum_probs=84.1
Q ss_pred ccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhh
Q 023841 59 WLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST 138 (276)
Q Consensus 59 ~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 138 (276)
|+.+++++..... +...-.+.+++|+++++ .++...-.... ..+++|+.|+++++ .++...-..+ ..
T Consensus 13 ~~~l~~s~n~l~~------iP~~~~~~~~~L~L~~N-~l~~~~~~~~~----~~l~~L~~L~L~~N-~i~~i~~~~~-~~ 79 (220)
T 2v70_A 13 GTTVDCSNQKLNK------IPEHIPQYTAELRLNNN-EFTVLEATGIF----KKLPQLRKINFSNN-KITDIEEGAF-EG 79 (220)
T ss_dssp TTEEECCSSCCSS------CCSCCCTTCSEEECCSS-CCCEECCCCCG----GGCTTCCEEECCSS-CCCEECTTTT-TT
T ss_pred CCEeEeCCCCccc------CccCCCCCCCEEEcCCC-cCCccCchhhh----ccCCCCCEEECCCC-cCCEECHHHh-CC
Confidence 4567766654322 22123456788888874 44322100001 22478888888884 5554221122 34
Q ss_pred CCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCc
Q 023841 139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNI 218 (276)
Q Consensus 139 ~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~ 218 (276)
+++|++|+++++ .++...-.. ...+++|+.|+++++ .++...... ...+++|+.|+++++ .++...
T Consensus 80 l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~--------- 145 (220)
T 2v70_A 80 ASGVNEILLTSN-RLENVQHKM-FKGLESLKTLMLRSN-RITCVGNDS-FIGLSSVRLLSLYDN-QITTVA--------- 145 (220)
T ss_dssp CTTCCEEECCSS-CCCCCCGGG-GTTCSSCCEEECTTS-CCCCBCTTS-STTCTTCSEEECTTS-CCCCBC---------
T ss_pred CCCCCEEECCCC-ccCccCHhH-hcCCcCCCEEECCCC-cCCeECHhH-cCCCccCCEEECCCC-cCCEEC---------
Confidence 778888888876 443221111 236778888888886 443211111 124678888888886 454311
Q ss_pred hhhHHHHHcCCCccceecccccCCC
Q 023841 219 LLMSEFIYHGIRFFQAVQINSSNGG 243 (276)
Q Consensus 219 ~~l~~~~~~~~~~L~~l~l~~~~~~ 243 (276)
...+.+++.|+.++++.+.+.
T Consensus 146 ----~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 146 ----PGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp ----TTTTTTCTTCCEEECCSCCEE
T ss_pred ----HHHhcCCCCCCEEEecCcCCc
Confidence 013445677777777766654
No 119
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.99 E-value=5.3e-07 Score=72.13 Aligned_cols=133 Identities=17% Similarity=0.207 Sum_probs=84.4
Q ss_pred CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841 56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135 (276)
Q Consensus 56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 135 (276)
+..++.+++++....... .-.+..+++|+.|+++++ .++...-.. ...+++|++|+++++ .++...- .+
T Consensus 31 ~~~l~~L~l~~n~i~~i~---~~~~~~l~~L~~L~Ls~N-~i~~~~~~~-----~~~l~~L~~L~Ls~N-~l~~l~~-~~ 99 (220)
T 2v9t_B 31 PETITEIRLEQNTIKVIP---PGAFSPYKKLRRIDLSNN-QISELAPDA-----FQGLRSLNSLVLYGN-KITELPK-SL 99 (220)
T ss_dssp CTTCCEEECCSSCCCEEC---TTSSTTCTTCCEEECCSS-CCCEECTTT-----TTTCSSCCEEECCSS-CCCCCCT-TT
T ss_pred CcCCCEEECCCCcCCCcC---HhHhhCCCCCCEEECCCC-cCCCcCHHH-----hhCCcCCCEEECCCC-cCCccCH-hH
Confidence 346778888876543211 112367899999999985 444221111 234689999999994 6653211 12
Q ss_pred HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCC
Q 023841 136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYV 203 (276)
Q Consensus 136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~ 203 (276)
...+++|+.|+|+++ .++......+ ..+++|+.|+++++ .++.-... ....+++|++|++++++
T Consensus 100 f~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 100 FEGLFSLQLLLLNAN-KINCLRVDAF-QDLHNLNLLSLYDN-KLQTIAKG-TFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSSC
T ss_pred ccCCCCCCEEECCCC-CCCEeCHHHc-CCCCCCCEEECCCC-cCCEECHH-HHhCCCCCCEEEeCCCC
Confidence 245899999999986 4543222222 36889999999997 44422211 12358899999999963
No 120
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.96 E-value=3.1e-06 Score=77.17 Aligned_cols=132 Identities=13% Similarity=0.113 Sum_probs=78.2
Q ss_pred CCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCH-HHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhc
Q 023841 112 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTD-IGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADN 190 (276)
Q Consensus 112 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~-~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~ 190 (276)
.+++|++|+++++ .+++.....+ ..+++|+.|+++++ .++. ..+......+++|+.|+++++ .++...-......
T Consensus 351 ~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~ 426 (562)
T 3a79_B 351 SPSSFTFLNFTQN-VFTDSVFQGC-STLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAW 426 (562)
T ss_dssp SCCCCCEEECCSS-CCCTTTTTTC-CSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSSCCCCC
T ss_pred CCCCceEEECCCC-ccccchhhhh-cccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCC-cCCCccChhhhcC
Confidence 4577888888874 5554222222 34777888888876 4543 122222346778888888876 3432111112234
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCC-CccceecccccCCCCCcceeEEEeeccCCCCceeeeecce
Q 023841 191 YQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGI-RFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 269 (276)
Q Consensus 191 ~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 269 (276)
+++|+.|++++| .++.. ....+ +.|+.++++++.+..- ...+ ..+++|+.|++.++.
T Consensus 427 l~~L~~L~l~~n-~l~~~----------------~~~~l~~~L~~L~L~~N~l~~i---p~~~--~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 427 AESILVLNLSSN-MLTGS----------------VFRCLPPKVKVLDLHNNRIMSI---PKDV--THLQALQELNVASNQ 484 (562)
T ss_dssp CTTCCEEECCSS-CCCGG----------------GGSSCCTTCSEEECCSSCCCCC---CTTT--TSSCCCSEEECCSSC
T ss_pred cccCCEEECCCC-CCCcc----------------hhhhhcCcCCEEECCCCcCccc---Chhh--cCCCCCCEEECCCCC
Confidence 677888888886 55532 12223 5788999988876532 1112 368899999988764
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.95 E-value=4.3e-07 Score=72.66 Aligned_cols=133 Identities=15% Similarity=0.138 Sum_probs=83.7
Q ss_pred CCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHH
Q 023841 57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS 136 (276)
Q Consensus 57 ~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 136 (276)
...+.+++++......... -.+..+++|++|+++++ .++... ......+++|++|+++++ .++...-.. .
T Consensus 32 ~~~~~L~L~~N~l~~~~~~--~~~~~l~~L~~L~L~~N-~i~~i~-----~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~ 101 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEAT--GIFKKLPQLRKINFSNN-KITDIE-----EGAFEGASGVNEILLTSN-RLENVQHKM-F 101 (220)
T ss_dssp TTCSEEECCSSCCCEECCC--CCGGGCTTCCEEECCSS-CCCEEC-----TTTTTTCTTCCEEECCSS-CCCCCCGGG-G
T ss_pred CCCCEEEcCCCcCCccCch--hhhccCCCCCEEECCCC-cCCEEC-----HHHhCCCCCCCEEECCCC-ccCccCHhH-h
Confidence 3456788887654432110 01357899999999984 454321 111234689999999994 665432222 2
Q ss_pred hhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCC
Q 023841 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYV 203 (276)
Q Consensus 137 ~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~ 203 (276)
..+++|++|+++++ .++...-..+ ..+++|+.|+++++ .++.-.... ...+++|++|++++++
T Consensus 102 ~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 102 KGLESLKTLMLRSN-RITCVGNDSF-IGLSSVRLLSLYDN-QITTVAPGA-FDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTCSSCCEEECTTS-CCCCBCTTSS-TTCTTCSEEECTTS-CCCCBCTTT-TTTCTTCCEEECCSCC
T ss_pred cCCcCCCEEECCCC-cCCeECHhHc-CCCccCCEEECCCC-cCCEECHHH-hcCCCCCCEEEecCcC
Confidence 45899999999986 4443211222 36889999999996 454321112 2358999999999973
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.92 E-value=4.8e-07 Score=77.91 Aligned_cols=162 Identities=12% Similarity=0.097 Sum_probs=97.1
Q ss_pred cCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHH
Q 023841 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 161 (276)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l 161 (276)
-.+.++.|+++++ .++......+ ...+++|+.|+++++ .++...-..+ ..+++|++|+|+++ .++.-.- ..
T Consensus 37 ~~~~l~~L~Ls~N-~l~~l~~~~~----~~~l~~L~~L~L~~N-~i~~i~~~~~-~~l~~L~~L~Ls~N-~l~~~~~-~~ 107 (361)
T 2xot_A 37 LPSYTALLDLSHN-NLSRLRAEWT----PTRLTNLHSLLLSHN-HLNFISSEAF-VPVPNLRYLDLSSN-HLHTLDE-FL 107 (361)
T ss_dssp CCTTCSEEECCSS-CCCEECTTSS----SSCCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSS-CCCEECT-TT
T ss_pred CCCCCCEEECCCC-CCCccChhhh----hhcccccCEEECCCC-cCCccChhhc-cCCCCCCEEECCCC-cCCcCCH-HH
Confidence 3457999999984 5543211111 114689999999994 6665332222 34889999999986 4543211 12
Q ss_pred HHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccC
Q 023841 162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSN 241 (276)
Q Consensus 162 ~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~ 241 (276)
...+++|+.|+++++ .++.-.... ...+++|+.|+++++ .++......+ . ....++.|+.++++++.
T Consensus 108 ~~~l~~L~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~L~~N-~l~~l~~~~~--------~--~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 108 FSDLQALEVLLLYNN-HIVVVDRNA-FEDMAQLQKLYLSQN-QISRFPVELI--------K--DGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp TTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCCSCCGGGT--------C------CTTCCEEECCSSC
T ss_pred hCCCcCCCEEECCCC-cccEECHHH-hCCcccCCEEECCCC-cCCeeCHHHh--------c--CcccCCcCCEEECCCCC
Confidence 247889999999996 554221111 235889999999997 5654111000 0 11457889999998888
Q ss_pred CCCCcceeEEEeeccCCC--Cceeeeecce
Q 023841 242 GGDHLAFAYIIETNTYKH--GKEKHIIETI 269 (276)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~--L~~l~~~~~~ 269 (276)
+... ....+ ..+++ |+.|.+.+.+
T Consensus 175 l~~l-~~~~~---~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 175 LKKL-PLTDL---QKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCCC-CHHHH---HHSCHHHHTTEECCSSC
T ss_pred CCcc-CHHHh---hhccHhhcceEEecCCC
Confidence 7654 22111 34454 3677777654
No 123
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.92 E-value=2e-07 Score=89.24 Aligned_cols=163 Identities=15% Similarity=0.121 Sum_probs=103.3
Q ss_pred cCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHH
Q 023841 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 161 (276)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l 161 (276)
-.+++++|+++++ .++..... ....+++|+.|++++|..+..-.-.. ...+++|+.|+|+++ .++...-..+
T Consensus 22 lp~~l~~LdLs~N-~i~~i~~~-----~~~~l~~L~~LdLs~n~~~~~i~~~~-f~~L~~L~~L~Ls~N-~l~~~~p~~~ 93 (844)
T 3j0a_A 22 VLNTTERLLLSFN-YIRTVTAS-----SFPFLEQLQLLELGSQYTPLTIDKEA-FRNLPNLRILDLGSS-KIYFLHPDAF 93 (844)
T ss_dssp SCTTCCEEEEESC-CCCEECSS-----SCSSCCSCSEEEECTTCCCCEECTTT-TSSCTTCCEEECTTC-CCCEECTTSS
T ss_pred CCCCcCEEECCCC-cCCccChh-----HCcccccCeEEeCCCCCCccccCHHH-hcCCCCCCEEECCCC-cCcccCHhHc
Confidence 3478999999985 44422111 12456999999999973332211111 245899999999987 4543222222
Q ss_pred HHhCCCCcEEecCCCCCCCHHHHHH-HHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceeccccc
Q 023841 162 VKNCKHIIDLNLSGCKNLLDKSLQL-IADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSS 240 (276)
Q Consensus 162 ~~~~~~L~~L~l~~c~~ltd~~~~~-l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~ 240 (276)
.++++|++|++++| .+++..... ....+++|++|++++| .++..... ..+..+++|+.++++.+
T Consensus 94 -~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~------------~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 94 -QGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLH------------PSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp -CSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCC------------GGGGTCSSCCEEEEESS
T ss_pred -cCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCC-cccccccc------------hhHhhCCCCCEEECCCC
Confidence 37899999999997 554322211 1336899999999997 55432110 14678899999999888
Q ss_pred CCCCCcceeEEEeeccC--CCCceeeeecceec
Q 023841 241 NGGDHLAFAYIIETNTY--KHGKEKHIIETIKT 271 (276)
Q Consensus 241 ~~~~~~~~~~~~~~~~~--~~L~~l~~~~~~~~ 271 (276)
.+.... ...+ ..+ ++|+.|.+..+.-.
T Consensus 159 ~i~~~~-~~~l---~~l~~~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 159 QIFLVC-EHEL---EPLQGKTLSFFSLAANSLY 187 (844)
T ss_dssp CCCCCC-SGGG---HHHHHCSSCCCEECCSBSC
T ss_pred cCCeeC-HHHc---ccccCCccceEECCCCccc
Confidence 765441 1111 222 78999999887543
No 124
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.88 E-value=2e-06 Score=69.18 Aligned_cols=132 Identities=15% Similarity=0.116 Sum_probs=85.8
Q ss_pred CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841 56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135 (276)
Q Consensus 56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 135 (276)
++.++.++++++....... -.+..+++|++|+++++ .++.. .......+++|+.|+++++ .++...- ..
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~L~~N-~l~~i-----~~~~~~~l~~L~~L~Ls~N-~l~~l~~-~~ 107 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEP---GVFDSLINLKELYLGSN-QLGAL-----PVGVFDSLTQLTVLDLGTN-QLTVLPS-AV 107 (229)
T ss_dssp CTTCSEEECCSSCCCCCCT---TTTTTCTTCCEEECCSS-CCCCC-----CTTTTTTCTTCCEEECCSS-CCCCCCT-TT
T ss_pred CCCCCEEEcCCCccCccCH---HHhhCccCCcEEECCCC-CCCCc-----ChhhcccCCCcCEEECCCC-cCCccCh-hH
Confidence 4678889998876543211 12357899999999985 44321 1111234699999999994 6654221 12
Q ss_pred HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCC
Q 023841 136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYV 203 (276)
Q Consensus 136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~ 203 (276)
...+++|++|+++++ .++ .+..-...+++|+.|+++++ .++.-.. .....+++|+.|++++++
T Consensus 108 ~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 108 FDRLVHLKELFMCCN-KLT--ELPRGIERLTHLTHLALDQN-QLKSIPH-GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTCTTCCEEECCSS-CCC--SCCTTGGGCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECTTSC
T ss_pred hCcchhhCeEeccCC-ccc--ccCcccccCCCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCCC
Confidence 245899999999986 555 12112257899999999996 5542111 223458999999999963
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.84 E-value=1.4e-06 Score=75.05 Aligned_cols=135 Identities=18% Similarity=0.208 Sum_probs=63.1
Q ss_pred CccEEecCCccCcchhhHHHhccc-cCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHH
Q 023841 58 LWLVIDLREMNNAGNRLVAALSIP-RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS 136 (276)
Q Consensus 58 ~~~~l~l~~~~~~~~~~l~~l~~~-~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 136 (276)
.++.+++++........ -... .+++|+.|+++++ .++...-.. ...+++|++|+++++ .++...-. ..
T Consensus 40 ~l~~L~Ls~N~l~~l~~---~~~~~~l~~L~~L~L~~N-~i~~i~~~~-----~~~l~~L~~L~Ls~N-~l~~~~~~-~~ 108 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRA---EWTPTRLTNLHSLLLSHN-HLNFISSEA-----FVPVPNLRYLDLSSN-HLHTLDEF-LF 108 (361)
T ss_dssp TCSEEECCSSCCCEECT---TSSSSCCTTCCEEECCSS-CCCEECTTT-----TTTCTTCCEEECCSS-CCCEECTT-TT
T ss_pred CCCEEECCCCCCCccCh---hhhhhcccccCEEECCCC-cCCccChhh-----ccCCCCCCEEECCCC-cCCcCCHH-Hh
Confidence 45556666554332111 1112 5677777777763 333211111 123467777777773 44432111 12
Q ss_pred hhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHH--HhcCCCccEEecCCCCCCCH
Q 023841 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLI--ADNYQELESLNLTRYVNMIL 207 (276)
Q Consensus 137 ~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l--~~~~~~L~~L~l~~c~~it~ 207 (276)
..+++|+.|+|+++ .++.-.-.. ...+++|++|+++++ .++.-....+ ...+++|+.|+|+++ .++.
T Consensus 109 ~~l~~L~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~ 177 (361)
T 2xot_A 109 SDLQALEVLLLYNN-HIVVVDRNA-FEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKK 177 (361)
T ss_dssp TTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCC
T ss_pred CCCcCCCEEECCCC-cccEECHHH-hCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCc
Confidence 23667777777765 333211111 125667777777765 3332111111 023666777777765 4443
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.81 E-value=9.5e-07 Score=69.33 Aligned_cols=108 Identities=18% Similarity=0.289 Sum_probs=72.9
Q ss_pred ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (276)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~ 160 (276)
..+++|++|+++++ .++. +..+. . +++|+.|+++++ .++. +......+++|+.|+++++ .++. +..
T Consensus 45 ~~l~~L~~L~ls~n-~l~~--l~~~~-~----l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~N-~l~~--l~~ 110 (198)
T 1ds9_A 45 STLKACKHLALSTN-NIEK--ISSLS-G----MENLRILSLGRN-LIKK--IENLDAVADTLEELWISYN-QIAS--LSG 110 (198)
T ss_dssp HHTTTCSEEECSEE-EESC--CCCHH-H----HTTCCEEEEEEE-EECS--CSSHHHHHHHCSEEEEEEE-ECCC--HHH
T ss_pred hcCCCCCEEECCCC-CCcc--ccccc-c----CCCCCEEECCCC-Cccc--ccchhhcCCcCCEEECcCC-cCCc--CCc
Confidence 56889999999874 3433 11222 2 388999999985 5553 2233344678999999987 5554 233
Q ss_pred HHHhCCCCcEEecCCCCCCCHH-HHHHHHhcCCCccEEecCCCCCCC
Q 023841 161 LVKNCKHIIDLNLSGCKNLLDK-SLQLIADNYQELESLNLTRYVNMI 206 (276)
Q Consensus 161 l~~~~~~L~~L~l~~c~~ltd~-~~~~l~~~~~~L~~L~l~~c~~it 206 (276)
+. .+++|+.|+++++ .+++- .+..+ ..+++|++|+++++ .++
T Consensus 111 ~~-~l~~L~~L~l~~N-~i~~~~~~~~l-~~l~~L~~L~l~~N-~l~ 153 (198)
T 1ds9_A 111 IE-KLVNLRVLYMSNN-KITNWGEIDKL-AALDKLEDLLLAGN-PLY 153 (198)
T ss_dssp HH-HHHHSSEEEESEE-ECCCHHHHHHH-TTTTTCSEEEECSC-HHH
T ss_pred cc-cCCCCCEEECCCC-cCCchhHHHHH-hcCCCCCEEEecCC-ccc
Confidence 33 6788999999996 56643 33334 35899999999997 443
No 127
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.79 E-value=4.1e-05 Score=70.62 Aligned_cols=77 Identities=10% Similarity=-0.003 Sum_probs=44.6
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCC
Q 023841 166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDH 245 (276)
Q Consensus 166 ~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~ 245 (276)
++|+.|++++| .++. +...+++|+.|+++++ .++.- ...+++|+.++++++.+...
T Consensus 221 ~~L~~L~Ls~N-~L~~-----lp~~l~~L~~L~Ls~N-~L~~l-----------------p~~~~~L~~L~Ls~N~L~~l 276 (622)
T 3g06_A 221 SGLKELIVSGN-RLTS-----LPVLPSELKELMVSGN-RLTSL-----------------PMLPSGLLSLSVYRNQLTRL 276 (622)
T ss_dssp TTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSS-CCSCC-----------------CCCCTTCCEEECCSSCCCSC
T ss_pred CCCCEEEccCC-ccCc-----CCCCCCcCcEEECCCC-CCCcC-----------------CcccccCcEEeCCCCCCCcC
Confidence 45666666554 3332 1133456666666665 34310 01456788888888877633
Q ss_pred cceeEEEeeccCCCCceeeeecceec
Q 023841 246 LAFAYIIETNTYKHGKEKHIIETIKT 271 (276)
Q Consensus 246 ~~~~~~~~~~~~~~L~~l~~~~~~~~ 271 (276)
. ..+ ..+++|+.|++.+++-.
T Consensus 277 -p--~~l--~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 277 -P--ESL--IHLSSETTVNLEGNPLS 297 (622)
T ss_dssp -C--GGG--GGSCTTCEEECCSCCCC
T ss_pred -C--HHH--hhccccCEEEecCCCCC
Confidence 2 123 67889999999887643
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.66 E-value=3.8e-06 Score=64.53 Aligned_cols=129 Identities=13% Similarity=0.093 Sum_probs=78.8
Q ss_pred ccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhh
Q 023841 59 WLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST 138 (276)
Q Consensus 59 ~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 138 (276)
|+.++++...... +.....++|++|+++++ .++... ......+++|++|+++++ .++...- .....
T Consensus 9 ~~~l~~~~~~l~~------~p~~~~~~l~~L~l~~n-~l~~~~-----~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~ 74 (177)
T 2o6r_A 9 GTEIRCNSKGLTS------VPTGIPSSATRLELESN-KLQSLP-----HGVFDKLTQLTKLSLSQN-QIQSLPD-GVFDK 74 (177)
T ss_dssp TTEEECCSSCCSS------CCTTCCTTCSEEECCSS-CCCCCC-----TTTTTTCTTCSEEECCSS-CCCCCCT-TTTTT
T ss_pred CCEEEecCCCCcc------CCCCCCCCCcEEEeCCC-cccEeC-----HHHhcCcccccEEECCCC-cceEeCh-hHccC
Confidence 5667776654322 11233578999999984 443211 111134589999999984 6653221 11235
Q ss_pred CCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCC
Q 023841 139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMI 206 (276)
Q Consensus 139 ~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it 206 (276)
+++|++|+++++ .++.-. ......+++|+.|+++++ .++.-.. .....+++|++|+++++ .++
T Consensus 75 l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N-~~~ 137 (177)
T 2o6r_A 75 LTKLTILYLHEN-KLQSLP-NGVFDKLTQLKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHTN-PWD 137 (177)
T ss_dssp CTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSS-CBC
T ss_pred CCccCEEECCCC-CccccC-HHHhhCCcccCEEECcCC-cceEeCH-HHhcCCcccCEEEecCC-Cee
Confidence 889999999986 454211 112246789999999996 5542111 22345889999999997 443
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.64 E-value=9e-06 Score=74.24 Aligned_cols=125 Identities=10% Similarity=0.013 Sum_probs=75.3
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCC
Q 023841 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (276)
Q Consensus 114 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~ 193 (276)
..|+.|+++++ .++. +-. ...+++|+.|+|+++ .++ .+..-...+++|+.|+++++ .++. +.. ...+++
T Consensus 441 ~~L~~L~Ls~n-~l~~--lp~-~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N-~l~~--lp~-l~~l~~ 509 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTV--LCH-LEQLLLVTHLDLSHN-RLR--ALPPALAALRCLEVLQASDN-ALEN--VDG-VANLPR 509 (567)
T ss_dssp TTCSEEECTTS-CCSS--CCC-GGGGTTCCEEECCSS-CCC--CCCGGGGGCTTCCEEECCSS-CCCC--CGG-GTTCSS
T ss_pred cCceEEEecCC-CCCC--CcC-ccccccCcEeecCcc-ccc--ccchhhhcCCCCCEEECCCC-CCCC--Ccc-cCCCCC
Confidence 46888888884 5554 222 344778888888876 454 22112336788888888886 4543 222 335788
Q ss_pred ccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCCcc-eeEEEeeccCCCCceee
Q 023841 194 LESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLA-FAYIIETNTYKHGKEKH 264 (276)
Q Consensus 194 L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~~~~~L~~l~ 264 (276)
|+.|+++++ .++.... ...+.+++.|+.++++.+.+..... ...+. ..+|+|+.|+
T Consensus 510 L~~L~Ls~N-~l~~~~~------------p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~--~~lp~L~~L~ 566 (567)
T 1dce_A 510 LQELLLCNN-RLQQSAA------------IQPLVSCPRLVLLNLQGNSLCQEEGIQERLA--EMLPSVSSIL 566 (567)
T ss_dssp CCEEECCSS-CCCSSST------------TGGGGGCTTCCEEECTTSGGGGSSSCTTHHH--HHCTTCSEEE
T ss_pred CcEEECCCC-CCCCCCC------------cHHHhcCCCCCEEEecCCcCCCCccHHHHHH--HHCcccCccC
Confidence 888888886 5543210 0135567788888887777654322 11222 4477887775
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.60 E-value=2e-06 Score=67.13 Aligned_cols=128 Identities=16% Similarity=0.123 Sum_probs=76.7
Q ss_pred ccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhh
Q 023841 59 WLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST 138 (276)
Q Consensus 59 ~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 138 (276)
|+.+++++..... +...-.++++.|+++++ .++......+. ..+++|++|+++++ .++...-..+ ..
T Consensus 10 ~~~l~~s~~~l~~------ip~~~~~~l~~L~l~~n-~i~~~~~~~~~----~~l~~L~~L~Ls~N-~l~~~~~~~~-~~ 76 (192)
T 1w8a_A 10 GTTVDCTGRGLKE------IPRDIPLHTTELLLNDN-ELGRISSDGLF----GRLPHLVKLELKRN-QLTGIEPNAF-EG 76 (192)
T ss_dssp TTEEECTTSCCSS------CCSCCCTTCSEEECCSC-CCCSBCCSCSG----GGCTTCCEEECCSS-CCCCBCTTTT-TT
T ss_pred CCEEEcCCCCcCc------CccCCCCCCCEEECCCC-cCCccCCcccc----ccCCCCCEEECCCC-CCCCcCHhHc-CC
Confidence 5667777654321 11123348999999984 44321111011 23589999999994 6654322222 34
Q ss_pred CCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCC
Q 023841 139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYV 203 (276)
Q Consensus 139 ~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~ 203 (276)
+++|++|+++++ .++......+ ..+++|++|+++++ .++...... ...+++|++|++++++
T Consensus 77 l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 77 ASHIQELQLGEN-KIKEISNKMF-LGLHQLKTLNLYDN-QISCVMPGS-FEHLNSLTSLNLASNP 137 (192)
T ss_dssp CTTCCEEECCSC-CCCEECSSSS-TTCTTCCEEECCSS-CCCEECTTS-STTCTTCCEEECTTCC
T ss_pred cccCCEEECCCC-cCCccCHHHh-cCCCCCCEEECCCC-cCCeeCHHH-hhcCCCCCEEEeCCCC
Confidence 789999999986 4543221112 36789999999996 554321111 2357899999999973
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.59 E-value=5.2e-06 Score=65.03 Aligned_cols=124 Identities=21% Similarity=0.219 Sum_probs=82.9
Q ss_pred CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841 56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135 (276)
Q Consensus 56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 135 (276)
.+.++.++++++....-. .+..+++|+.|+++++ .++. +......+ ++|+.|+++++ .++.. ..+
T Consensus 47 l~~L~~L~ls~n~l~~l~-----~~~~l~~L~~L~l~~n-~l~~--l~~~~~~~----~~L~~L~L~~N-~l~~l--~~~ 111 (198)
T 1ds9_A 47 LKACKHLALSTNNIEKIS-----SLSGMENLRILSLGRN-LIKK--IENLDAVA----DTLEELWISYN-QIASL--SGI 111 (198)
T ss_dssp TTTCSEEECSEEEESCCC-----CHHHHTTCCEEEEEEE-EECS--CSSHHHHH----HHCSEEEEEEE-ECCCH--HHH
T ss_pred CCCCCEEECCCCCCcccc-----ccccCCCCCEEECCCC-Cccc--ccchhhcC----CcCCEEECcCC-cCCcC--Ccc
Confidence 456788888876543311 2356899999999985 3431 11222222 78999999995 67663 333
Q ss_pred HhhCCCCCeEeccCCCCcCHH-HHHHHHHhCCCCcEEecCCCCCCCHH---------HHHHHHhcCCCccEEe
Q 023841 136 SSTCPELKVFSIYWNVRVTDI-GIQHLVKNCKHIIDLNLSGCKNLLDK---------SLQLIADNYQELESLN 198 (276)
Q Consensus 136 ~~~~~~L~~L~L~~~~~l~~~-~l~~l~~~~~~L~~L~l~~c~~ltd~---------~~~~l~~~~~~L~~L~ 198 (276)
. .+++|+.|+++++ .+++- .+..+. .+++|++|+++++ .+++. ....+...+|+|+.|+
T Consensus 112 ~-~l~~L~~L~l~~N-~i~~~~~~~~l~-~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 112 E-KLVNLRVLYMSNN-KITNWGEIDKLA-ALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp H-HHHHSSEEEESEE-ECCCHHHHHHHT-TTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred c-cCCCCCEEECCCC-cCCchhHHHHHh-cCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 3 4789999999987 56653 334444 7999999999997 44322 1223455799999998
No 132
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.47 E-value=0.00019 Score=63.63 Aligned_cols=13 Identities=15% Similarity=0.110 Sum_probs=7.0
Q ss_pred cCCCccEEecCCC
Q 023841 190 NYQELESLNLTRY 202 (276)
Q Consensus 190 ~~~~L~~L~l~~c 202 (276)
.+++|++|+++++
T Consensus 235 ~l~~L~~L~l~~N 247 (454)
T 1jl5_A 235 NLPFLTTIYADNN 247 (454)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC
Confidence 3455555555554
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.40 E-value=5e-05 Score=69.30 Aligned_cols=105 Identities=20% Similarity=0.226 Sum_probs=67.3
Q ss_pred CCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHH
Q 023841 84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK 163 (276)
Q Consensus 84 ~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~ 163 (276)
..|+.|+++++ .++. +..+ ..+++|+.|+++++ .++. +-.-...+++|+.|+|+++ .++. +..+ .
T Consensus 441 ~~L~~L~Ls~n-~l~~--lp~~-----~~l~~L~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~Ls~N-~l~~--lp~l-~ 505 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTV--LCHL-----EQLLLVTHLDLSHN-RLRA--LPPALAALRCLEVLQASDN-ALEN--VDGV-A 505 (567)
T ss_dssp TTCSEEECTTS-CCSS--CCCG-----GGGTTCCEEECCSS-CCCC--CCGGGGGCTTCCEEECCSS-CCCC--CGGG-T
T ss_pred cCceEEEecCC-CCCC--CcCc-----cccccCcEeecCcc-cccc--cchhhhcCCCCCEEECCCC-CCCC--Cccc-C
Confidence 35888999884 4443 1111 22488999999984 5552 2112345889999999876 5553 3333 3
Q ss_pred hCCCCcEEecCCCCCCCHHH-HHHHHhcCCCccEEecCCCCCCC
Q 023841 164 NCKHIIDLNLSGCKNLLDKS-LQLIADNYQELESLNLTRYVNMI 206 (276)
Q Consensus 164 ~~~~L~~L~l~~c~~ltd~~-~~~l~~~~~~L~~L~l~~c~~it 206 (276)
.+++|+.|+++++ .++... ...+ ..+++|+.|+++++ .++
T Consensus 506 ~l~~L~~L~Ls~N-~l~~~~~p~~l-~~l~~L~~L~L~~N-~l~ 546 (567)
T 1dce_A 506 NLPRLQELLLCNN-RLQQSAAIQPL-VSCPRLVLLNLQGN-SLC 546 (567)
T ss_dssp TCSSCCEEECCSS-CCCSSSTTGGG-GGCTTCCEEECTTS-GGG
T ss_pred CCCCCcEEECCCC-CCCCCCCcHHH-hcCCCCCEEEecCC-cCC
Confidence 6889999999986 554332 2222 35889999999987 454
No 134
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.38 E-value=0.00011 Score=67.11 Aligned_cols=34 Identities=3% Similarity=-0.254 Sum_probs=21.0
Q ss_pred cceecccccCCCCCcceeEEEeeccCCCCceeeeeccee
Q 023841 232 FQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK 270 (276)
Q Consensus 232 L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~ 270 (276)
|+.++++++.++.. + ..+ ..+++|+.|++.++.-
T Consensus 209 L~~L~Ls~N~l~~l-p--~~l--~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 209 EIFFRCRENRITHI-P--ENI--LSLDPTCTIILEDNPL 242 (571)
T ss_dssp CEEEECCSSCCCCC-C--GGG--GGSCTTEEEECCSSSC
T ss_pred ceEEecCCCcceec-C--HHH--hcCCCCCEEEeeCCcC
Confidence 36777777666533 1 111 3478888888887653
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.38 E-value=1.2e-05 Score=62.83 Aligned_cols=108 Identities=19% Similarity=0.183 Sum_probs=68.1
Q ss_pred CCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHH
Q 023841 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV 162 (276)
Q Consensus 83 ~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~ 162 (276)
.++|++|+++++ .++.-. ..+ ..+++|+.|+++++ .++...-..+ ..+++|++|+|+++ .++.-.-..+
T Consensus 30 ~~~l~~L~L~~n-~i~~ip-~~~-----~~l~~L~~L~Ls~N-~i~~i~~~~f-~~l~~L~~L~Ls~N-~l~~i~~~~f- 98 (193)
T 2wfh_A 30 PRDVTELYLDGN-QFTLVP-KEL-----SNYKHLTLIDLSNN-RISTLSNQSF-SNMTQLLTLILSYN-RLRCIPPRTF- 98 (193)
T ss_dssp CTTCCEEECCSS-CCCSCC-GGG-----GGCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCBCCTTTT-
T ss_pred CCCCCEEECCCC-cCchhH-HHh-----hcccCCCEEECCCC-cCCEeCHhHc-cCCCCCCEEECCCC-ccCEeCHHHh-
Confidence 468999999984 444211 111 23589999999984 6654322222 34789999999976 4443221222
Q ss_pred HhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCC
Q 023841 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYV 203 (276)
Q Consensus 163 ~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~ 203 (276)
..+++|+.|+++++ .++.-.. .....+++|+.|++++++
T Consensus 99 ~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 99 DGLKSLRLLSLHGN-DISVVPE-GAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTCTTCCEEECCSS-CCCBCCT-TTTTTCTTCCEEECCSSC
T ss_pred CCCCCCCEEECCCC-CCCeeCh-hhhhcCccccEEEeCCCC
Confidence 36789999999996 4542111 122357899999999863
No 136
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.34 E-value=0.00054 Score=63.14 Aligned_cols=83 Identities=19% Similarity=0.138 Sum_probs=45.2
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCC
Q 023841 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (276)
Q Consensus 114 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~ 193 (276)
++|+.|+++++ .++.- ...+++|+.|+++++ .++ .+...+++|+.|++++| .++ .+..-...+++
T Consensus 221 ~~L~~L~Ls~N-~L~~l-----p~~l~~L~~L~Ls~N-~L~-----~lp~~~~~L~~L~Ls~N-~L~--~lp~~l~~l~~ 285 (622)
T 3g06_A 221 SGLKELIVSGN-RLTSL-----PVLPSELKELMVSGN-RLT-----SLPMLPSGLLSLSVYRN-QLT--RLPESLIHLSS 285 (622)
T ss_dssp TTCCEEECCSS-CCSCC-----CCCCTTCCEEECCSS-CCS-----CCCCCCTTCCEEECCSS-CCC--SCCGGGGGSCT
T ss_pred CCCCEEEccCC-ccCcC-----CCCCCcCcEEECCCC-CCC-----cCCcccccCcEEeCCCC-CCC--cCCHHHhhccc
Confidence 55666666663 44431 134566777777665 343 12224567777777775 444 11111335677
Q ss_pred ccEEecCCCCCCCHHHHHH
Q 023841 194 LESLNLTRYVNMILLGLFY 212 (276)
Q Consensus 194 L~~L~l~~c~~it~~~l~~ 212 (276)
|+.|+++++ .++......
T Consensus 286 L~~L~L~~N-~l~~~~~~~ 303 (622)
T 3g06_A 286 ETTVNLEGN-PLSERTLQA 303 (622)
T ss_dssp TCEEECCSC-CCCHHHHHH
T ss_pred cCEEEecCC-CCCCcCHHH
Confidence 777777776 566544443
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.32 E-value=5.5e-05 Score=64.02 Aligned_cols=13 Identities=0% Similarity=0.005 Sum_probs=8.7
Q ss_pred ccCCCccEEeccC
Q 023841 81 PRYRHVREINLEF 93 (276)
Q Consensus 81 ~~~~~L~~L~l~~ 93 (276)
..|++|+.+++.+
T Consensus 121 ~~~~~L~~l~l~~ 133 (329)
T 3sb4_A 121 KGCDNLKICQIRK 133 (329)
T ss_dssp TTCTTCCEEEBCC
T ss_pred hcCcccceEEcCC
Confidence 5667777777765
No 138
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.30 E-value=0.00083 Score=59.49 Aligned_cols=12 Identities=8% Similarity=0.052 Sum_probs=6.5
Q ss_pred cCCCccEEeccC
Q 023841 82 RYRHVREINLEF 93 (276)
Q Consensus 82 ~~~~L~~L~l~~ 93 (276)
.+++|++|++++
T Consensus 235 ~l~~L~~L~l~~ 246 (454)
T 1jl5_A 235 NLPFLTTIYADN 246 (454)
T ss_dssp TCTTCCEEECCS
T ss_pred CCCCCCEEECCC
Confidence 445555555555
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.29 E-value=4.5e-05 Score=71.72 Aligned_cols=13 Identities=31% Similarity=0.266 Sum_probs=6.7
Q ss_pred hCCCCcEEecCCC
Q 023841 164 NCKHIIDLNLSGC 176 (276)
Q Consensus 164 ~~~~L~~L~l~~c 176 (276)
.+++|+.|+|+++
T Consensus 268 ~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 268 NLSNLRVLDLSHN 280 (727)
T ss_dssp GGTTCCEEECTTS
T ss_pred CCCCCCEEeCcCC
Confidence 4455555555554
No 140
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.19 E-value=0.00011 Score=67.03 Aligned_cols=158 Identities=14% Similarity=0.067 Sum_probs=97.6
Q ss_pred CCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHH
Q 023841 57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS 136 (276)
Q Consensus 57 ~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 136 (276)
..++.++++++...+ +...-+++|+.|+++++ .++. + +..+++|+.|+++++ .++. +..
T Consensus 59 ~~L~~L~Ls~n~L~~------lp~~l~~~L~~L~Ls~N-~l~~-----i----p~~l~~L~~L~Ls~N-~l~~--ip~-- 117 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS------LPDNLPPQITVLEITQN-ALIS-----L----PELPASLEYLDACDN-RLST--LPE-- 117 (571)
T ss_dssp TTCSEEECCSSCCSC------CCSCCCTTCSEEECCSS-CCSC-----C----CCCCTTCCEEECCSS-CCSC--CCC--
T ss_pred CCccEEEeCCCCCCc------cCHhHcCCCCEEECcCC-CCcc-----c----ccccCCCCEEEccCC-CCCC--cch--
Confidence 367888888765432 11123578999999984 4542 1 123589999999985 6554 211
Q ss_pred hhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhc
Q 023841 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSN 216 (276)
Q Consensus 137 ~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~ 216 (276)
...+|+.|+++++ .++. +...+++|+.|+++++ .++. + ...+++|+.|++++| .++.- .
T Consensus 118 -l~~~L~~L~Ls~N-~l~~-----lp~~l~~L~~L~Ls~N-~l~~--l---p~~l~~L~~L~Ls~N-~L~~l--p----- 176 (571)
T 3cvr_A 118 -LPASLKHLDVDNN-QLTM-----LPELPALLEYINADNN-QLTM--L---PELPTSLEVLSVRNN-QLTFL--P----- 176 (571)
T ss_dssp -CCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSS-CCSC--C---CCCCTTCCEEECCSS-CCSCC--C-----
T ss_pred -hhcCCCEEECCCC-cCCC-----CCCcCccccEEeCCCC-ccCc--C---CCcCCCcCEEECCCC-CCCCc--c-----
Confidence 1238999999986 4443 2226789999999996 4542 1 124789999999997 55431 1
Q ss_pred CchhhHHHHHcCCCccceecccccCCCCCcceeEEEe--eccCCCCceeeeecce
Q 023841 217 NILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIE--TNTYKHGKEKHIIETI 269 (276)
Q Consensus 217 ~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~--~~~~~~L~~l~~~~~~ 269 (276)
. +. ++|+.++++++.++.. +. +.. ....+.|+.|++.++.
T Consensus 177 --~------l~--~~L~~L~Ls~N~L~~l-p~--~~~~L~~~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 177 --E------LP--ESLEALDVSTNLLESL-PA--VPVRNHHSEETEIFFRCRENR 218 (571)
T ss_dssp --C------CC--TTCCEEECCSSCCSSC-CC--CC--------CCEEEECCSSC
T ss_pred --h------hh--CCCCEEECcCCCCCch-hh--HHHhhhcccccceEEecCCCc
Confidence 0 11 6788999988887643 21 110 0112223888887753
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.16 E-value=4.6e-05 Score=71.67 Aligned_cols=111 Identities=16% Similarity=0.150 Sum_probs=73.2
Q ss_pred ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHH
Q 023841 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (276)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~ 160 (276)
..+++|+.|+++++. +..-. ..+. .+++|++|+++++ .++. +-.-...+++|+.|+|+++ .++ .+..
T Consensus 221 ~~l~~L~~L~Ls~n~-l~~l~-~~~~-----~l~~L~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~Ls~N-~l~--~lp~ 287 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQ-IFNIS-ANIF-----KYDFLTRLYLNGN-SLTE--LPAEIKNLSNLRVLDLSHN-RLT--SLPA 287 (727)
T ss_dssp -CCCCCCEEECTTSC-CSCCC-GGGG-----GCCSCSCCBCTTS-CCSC--CCGGGGGGTTCCEEECTTS-CCS--SCCS
T ss_pred ccCCCCcEEECCCCC-CCCCC-hhhc-----CCCCCCEEEeeCC-cCcc--cChhhhCCCCCCEEeCcCC-cCC--ccCh
Confidence 567899999999853 33100 0111 2589999999995 6652 1111245899999999987 565 2221
Q ss_pred HHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCCCCCCHH
Q 023841 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILL 208 (276)
Q Consensus 161 l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~ 208 (276)
-...+++|+.|+|++| .++ .+..-...+++|+.|+|+++ .++..
T Consensus 288 ~~~~l~~L~~L~L~~N-~l~--~lp~~~~~l~~L~~L~L~~N-~l~~~ 331 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDN-MVT--TLPWEFGNLCNLQFLGVEGN-PLEKQ 331 (727)
T ss_dssp SGGGGTTCSEEECCSS-CCC--CCCSSTTSCTTCCCEECTTS-CCCSH
T ss_pred hhcCCCCCCEEECCCC-CCC--ccChhhhcCCCccEEeCCCC-ccCCC
Confidence 1247889999999997 554 11111346899999999997 67654
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.13 E-value=5.2e-05 Score=64.17 Aligned_cols=35 Identities=29% Similarity=0.292 Sum_probs=19.4
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCC
Q 023841 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWN 150 (276)
Q Consensus 113 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~ 150 (276)
+++|++|.++. .++.-+-.+ ...|++|+.|++++.
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~a-F~~~~~L~~l~l~~n 134 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDAA-FKGCDNLKICQIRKK 134 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTTT-TTTCTTCCEEEBCCS
T ss_pred cCCCcEEECCc--cccchhHHH-hhcCcccceEEcCCC
Confidence 57788888775 232211111 234788888887654
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.11 E-value=2.8e-05 Score=60.57 Aligned_cols=113 Identities=16% Similarity=0.179 Sum_probs=65.7
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCC
Q 023841 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (276)
Q Consensus 114 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~ 193 (276)
++++.|+++++ .++......+...+++|++|+++++ .++...-..+ ..+++|+.|+++++ .++...... ...+++
T Consensus 29 ~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~ 103 (192)
T 1w8a_A 29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAF-EGASHIQELQLGEN-KIKEISNKM-FLGLHQ 103 (192)
T ss_dssp TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTT-TTCTTCCEEECCSC-CCCEECSSS-STTCTT
T ss_pred CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHc-CCcccCCEEECCCC-cCCccCHHH-hcCCCC
Confidence 47888888884 5554222122345788888888876 4442211122 35778888888885 444211111 224678
Q ss_pred ccEEecCCCCCCCHHHHHHHHhcCchhhHHHHHcCCCccceecccccCCCCC
Q 023841 194 LESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDH 245 (276)
Q Consensus 194 L~~L~l~~c~~it~~~l~~l~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~ 245 (276)
|++|+++++ .++... ...+..++.|+.++++.+.+.-.
T Consensus 104 L~~L~L~~N-~l~~~~-------------~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 104 LKTLNLYDN-QISCVM-------------PGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCEEECCSS-CCCEEC-------------TTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCEEECCCC-cCCeeC-------------HHHhhcCCCCCEEEeCCCCccCc
Confidence 888888886 554311 01234566777787777765533
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.07 E-value=7.2e-05 Score=58.30 Aligned_cols=114 Identities=13% Similarity=0.118 Sum_probs=71.4
Q ss_pred CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841 56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135 (276)
Q Consensus 56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 135 (276)
++.++.+++++....... . .+..+++|+.|+++++ .++...- .....+++|++|+++++ .++...-..+
T Consensus 30 ~~~l~~L~L~~n~i~~ip--~--~~~~l~~L~~L~Ls~N-~i~~i~~-----~~f~~l~~L~~L~Ls~N-~l~~i~~~~f 98 (193)
T 2wfh_A 30 PRDVTELYLDGNQFTLVP--K--ELSNYKHLTLIDLSNN-RISTLSN-----QSFSNMTQLLTLILSYN-RLRCIPPRTF 98 (193)
T ss_dssp CTTCCEEECCSSCCCSCC--G--GGGGCTTCCEEECCSS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCCBCCTTTT
T ss_pred CCCCCEEECCCCcCchhH--H--HhhcccCCCEEECCCC-cCCEeCH-----hHccCCCCCCEEECCCC-ccCEeCHHHh
Confidence 346778888876544211 1 2367899999999984 4443211 11234689999999994 6654322222
Q ss_pred HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHH
Q 023841 136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKS 183 (276)
Q Consensus 136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~ 183 (276)
..+++|+.|+|+++ .++.-. ......+++|+.|+++++...-|..
T Consensus 99 -~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 99 -DGLKSLRLLSLHGN-DISVVP-EGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp -TTCTTCCEEECCSS-CCCBCC-TTTTTTCTTCCEEECCSSCEECSGG
T ss_pred -CCCCCCCEEECCCC-CCCeeC-hhhhhcCccccEEEeCCCCeecCCc
Confidence 34889999999986 454211 1122367899999999864433333
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.03 E-value=0.00038 Score=53.12 Aligned_cols=110 Identities=13% Similarity=0.118 Sum_probs=69.9
Q ss_pred CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHH
Q 023841 56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135 (276)
Q Consensus 56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 135 (276)
++.++.+++++....... .-.+..+++|++|+++++ .++.. .......+++|+.|+++++ .++...-. .
T Consensus 27 ~~~l~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n-~l~~~-----~~~~~~~l~~L~~L~l~~N-~l~~~~~~-~ 95 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLP---HGVFDKLTQLTKLSLSQN-QIQSL-----PDGVFDKLTKLTILYLHEN-KLQSLPNG-V 95 (177)
T ss_dssp CTTCSEEECCSSCCCCCC---TTTTTTCTTCSEEECCSS-CCCCC-----CTTTTTTCTTCCEEECCSS-CCCCCCTT-T
T ss_pred CCCCcEEEeCCCcccEeC---HHHhcCcccccEEECCCC-cceEe-----ChhHccCCCccCEEECCCC-CccccCHH-H
Confidence 356788888876543211 111357899999999985 44421 1111134689999999994 66542211 2
Q ss_pred HhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCC
Q 023841 136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKN 178 (276)
Q Consensus 136 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ 178 (276)
...+++|+.|+++++ .++.- ...+...+++|++|+++++..
T Consensus 96 ~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 96 FDKLTQLKELALDTN-QLKSV-PDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp TTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSSCB
T ss_pred hhCCcccCEEECcCC-cceEe-CHHHhcCCcccCEEEecCCCe
Confidence 245889999999986 55421 112234688999999999743
No 146
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.98 E-value=0.0016 Score=53.33 Aligned_cols=13 Identities=8% Similarity=-0.041 Sum_probs=7.6
Q ss_pred ccCCCccEEeccC
Q 023841 81 PRYRHVREINLEF 93 (276)
Q Consensus 81 ~~~~~L~~L~l~~ 93 (276)
++-+.-+.|+++.
T Consensus 124 ryn~~~~~LdLs~ 136 (267)
T 3rw6_A 124 RYDGSQQALDLKG 136 (267)
T ss_dssp TEETTTTEEECTT
T ss_pred ccchhccccCHHH
Confidence 4445566677654
No 147
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=96.82 E-value=0.00044 Score=57.29 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=35.2
Q ss_pred CCCCCCcHHHHHHHhcCCCHhhhH-HHhccCHHHHHHHhcCCCCccEE
Q 023841 16 TWSKETVPKVIRIMSTRLSQRDII-SLLLVSPWLHRTLVSYPSLWLVI 62 (276)
Q Consensus 16 ~~~~~~~p~il~~if~~L~~~~l~-~~~~v~~~~~~~~~~~~~~~~~l 62 (276)
....+| +|++..||++|+..++. +|++|||.|+ .++.++..|+..
T Consensus 50 ~~~~LP-~ell~~Il~~Lp~~~L~~r~~~VCk~Wr-~l~~~~~~w~~~ 95 (297)
T 2e31_A 50 YLAELP-EPLLLRVLAELPATELVQACRLVCLRWK-ELVDGAPLWLLK 95 (297)
T ss_dssp CTTSSC-HHHHHHHHHTSCHHHHHHTGGGTCHHHH-HHHTSHHHHHHH
T ss_pred ChhhCC-HHHHHHHHHcCCHHHHHHHHHHHhHHHH-HHhcChHHHHHH
Confidence 334444 48999999999999999 9999999966 466666666643
No 148
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.78 E-value=0.00033 Score=57.66 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=39.3
Q ss_pred CCCCCcHHHHHHHhcCCCHhhhHHHhccCHHHHHHHhcCCCCccEEecCC
Q 023841 17 WSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLRE 66 (276)
Q Consensus 17 ~~~~~~p~il~~if~~L~~~~l~~~~~v~~~~~~~~~~~~~~~~~l~l~~ 66 (276)
|.++| +|++.+||+||+.+|+.++++||+.| +.++.++.+|+.+-...
T Consensus 5 l~~LP-~ei~l~IlsfL~p~DL~~l~~vcr~W-r~la~D~~LWr~~l~rd 52 (312)
T 3l2o_B 5 LTRLP-IDVQLYILSFLSPHDLCQLGSTNHYW-NETVRDPILWRYFLLRD 52 (312)
T ss_dssp HHHSC-HHHHHHHHHTSCHHHHHHHHTTCHHH-HHHHTCHHHHHHHHHSS
T ss_pred hHhCC-HHHHHHHHhcCCHHHHHHHHHHHHHH-HHHhccchHHHHHHhcc
Confidence 34444 58999999999999999999999995 56788888888765554
No 149
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.47 E-value=8.2e-06 Score=69.83 Aligned_cols=36 Identities=6% Similarity=0.015 Sum_probs=20.5
Q ss_pred CCCccEEecCCccCcchhhHHHhccccCCCccEEeccCC
Q 023841 56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFA 94 (276)
Q Consensus 56 ~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~ 94 (276)
+...+.+++++.....- ..-.+..+++|++|+++++
T Consensus 29 ~~~l~~L~Ls~N~i~~i---~~~~f~~l~~L~~L~Ls~N 64 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVI---QKGAFSGFGDLEKIEISQN 64 (350)
T ss_dssp CTTCSEEEEESCCCSEE---CTTSSTTCTTCCEEEEECC
T ss_pred CCCCCEEEccCCcCCCc---CHHHHcCCCCCCEEECcCC
Confidence 34566777776543321 1112356778888888775
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.42 E-value=0.00028 Score=53.66 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=31.7
Q ss_pred CCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCCC
Q 023841 139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY 202 (276)
Q Consensus 139 ~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~c 202 (276)
+++|++|+|+++ .++.-. ......+++|++|+++++ .++.-.- .....+++|+.|+++++
T Consensus 53 l~~L~~L~Ls~N-~l~~l~-~~~f~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 53 LTQLTRLDLDNN-QLTVLP-AGVFDKLTQLTQLSLNDN-QLKSIPR-GAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS
T ss_pred cccCCEEECCCC-CcCccC-hhhccCCCCCCEEECCCC-ccCEeCH-HHhcCCCCCCEEEeCCC
Confidence 556666666654 333111 111235667777777775 3431110 11234678888888875
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.42 E-value=0.0031 Score=51.62 Aligned_cols=84 Identities=21% Similarity=0.375 Sum_probs=58.6
Q ss_pred CCCCccEEecCCCCCCCH-HHHHHHHhhCCCCCeEeccCCCCcCHH-HHHHHHHhCCCCcEEecCCCCCCCH------HH
Q 023841 112 SLQDLESLNLNGCQKISD-KGIEIISSTCPELKVFSIYWNVRVTDI-GIQHLVKNCKHIIDLNLSGCKNLLD------KS 183 (276)
Q Consensus 112 ~~~~L~~L~l~~c~~l~~-~~~~~l~~~~~~L~~L~L~~~~~l~~~-~l~~l~~~~~~L~~L~l~~c~~ltd------~~ 183 (276)
.+++|+.|++++ +.++. .++..+...+++|+.|+|+++ .+++- .+..+. .+ +|++|+++++ .++. ..
T Consensus 168 ~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~-~l-~L~~L~L~~N-pl~~~~~~~~~y 242 (267)
T 3rw6_A 168 NIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIK-GL-KLEELWLDGN-SLCDTFRDQSTY 242 (267)
T ss_dssp HCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGT-TS-CCSEEECTTS-TTGGGCSSHHHH
T ss_pred hCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcc-cC-CcceEEccCC-cCccccCcchhH
Confidence 359999999999 57765 234445567999999999986 55543 333332 33 8999999996 4542 33
Q ss_pred HHHHHhcCCCccEEecC
Q 023841 184 LQLIADNYQELESLNLT 200 (276)
Q Consensus 184 ~~~l~~~~~~L~~L~l~ 200 (276)
...+...+|+|+.||=.
T Consensus 243 ~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 243 ISAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHHCTTCCEESSC
T ss_pred HHHHHHHCcccCeECCc
Confidence 34566679999999843
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.41 E-value=0.00029 Score=53.88 Aligned_cols=83 Identities=19% Similarity=0.197 Sum_probs=41.7
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCC
Q 023841 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (276)
Q Consensus 114 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~ 193 (276)
++|+.|++++ +.++...-. ....+++|+.|+|+++ .++.-. ..+...+++|+.|+++++ .++.-.- .....+++
T Consensus 33 ~~L~~L~Ls~-N~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~i~-~~~~~~l~~L~~L~L~~N-~l~~l~~-~~~~~l~~ 106 (174)
T 2r9u_A 33 TDKQRLWLNN-NQITKLEPG-VFDHLVNLQQLYFNSN-KLTAIP-TGVFDKLTQLTQLDLNDN-HLKSIPR-GAFDNLKS 106 (174)
T ss_dssp TTCSEEECCS-SCCCCCCTT-TTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTT
T ss_pred CCCcEEEeCC-CCccccCHH-HhcCCcCCCEEECCCC-CCCccC-hhHhCCcchhhEEECCCC-ccceeCH-HHhccccC
Confidence 4556666655 233321111 1123566666666654 333210 111235677788887775 4431100 11234778
Q ss_pred ccEEecCCC
Q 023841 194 LESLNLTRY 202 (276)
Q Consensus 194 L~~L~l~~c 202 (276)
|+.|+++++
T Consensus 107 L~~L~L~~N 115 (174)
T 2r9u_A 107 LTHIYLYNN 115 (174)
T ss_dssp CSEEECCSS
T ss_pred CCEEEeCCC
Confidence 888888886
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.31 E-value=0.0005 Score=52.24 Aligned_cols=103 Identities=15% Similarity=0.099 Sum_probs=63.8
Q ss_pred ccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhh
Q 023841 59 WLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST 138 (276)
Q Consensus 59 ~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 138 (276)
|+.+++++..... +...-.++|+.|+++++ .++...-. ....+++|+.|++++ +.++...- .....
T Consensus 11 ~~~l~~s~n~l~~------ip~~~~~~l~~L~L~~N-~i~~~~~~-----~~~~l~~L~~L~Ls~-N~l~~l~~-~~f~~ 76 (170)
T 3g39_A 11 GTTVDCSGKSLAS------VPTGIPTTTQVLYLYDN-QITKLEPG-----VFDRLTQLTRLDLDN-NQLTVLPA-GVFDK 76 (170)
T ss_dssp TTEEECTTSCCSS------CCSCCCTTCSEEECCSS-CCCCCCTT-----TTTTCTTCSEEECCS-SCCCCCCT-TTTTT
T ss_pred CCEEEeCCCCcCc------cCccCCCCCcEEEcCCC-cCCccChh-----hhcCcccCCEEECCC-CCcCccCh-hhccC
Confidence 5667777654332 11123478999999984 44421111 113468999999999 46664221 12245
Q ss_pred CCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCC
Q 023841 139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCK 177 (276)
Q Consensus 139 ~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~ 177 (276)
+++|++|+|+++ .++.-. ......+++|+.|+++++.
T Consensus 77 l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 77 LTQLTQLSLNDN-QLKSIP-RGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCC-ccCEeC-HHHhcCCCCCCEEEeCCCC
Confidence 899999999986 454211 1123468899999999963
No 154
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.23 E-value=0.0013 Score=57.57 Aligned_cols=48 Identities=21% Similarity=0.172 Sum_probs=37.2
Q ss_pred CCCCCcHHHHHHHhcCCCHhhhHHHhccCHHHHHHHhcCCCCccEEecC
Q 023841 17 WSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLR 65 (276)
Q Consensus 17 ~~~~~~p~il~~if~~L~~~~l~~~~~v~~~~~~~~~~~~~~~~~l~l~ 65 (276)
++.+| +|++.+||+||+..++.+|++||+.|++.+...+..|+.+-+.
T Consensus 15 ~~~lp-~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~ 62 (464)
T 3v7d_B 15 ITSLP-FEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLIS 62 (464)
T ss_dssp HHHSC-HHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHCC-HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhc
Confidence 34444 5899999999999999999999999776433337788876543
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=95.73 E-value=0.00086 Score=51.18 Aligned_cols=85 Identities=15% Similarity=0.165 Sum_probs=54.9
Q ss_pred CCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHH
Q 023841 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV 162 (276)
Q Consensus 83 ~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~ 162 (276)
.++|+.|+++++ .++... ......+++|+.|++++ +.++.-.- .+...+++|+.|+|+++ .++.-. ....
T Consensus 32 ~~~L~~L~Ls~N-~l~~~~-----~~~~~~l~~L~~L~Ls~-N~l~~i~~-~~~~~l~~L~~L~L~~N-~l~~l~-~~~~ 101 (174)
T 2r9u_A 32 PTDKQRLWLNNN-QITKLE-----PGVFDHLVNLQQLYFNS-NKLTAIPT-GVFDKLTQLTQLDLNDN-HLKSIP-RGAF 101 (174)
T ss_dssp CTTCSEEECCSS-CCCCCC-----TTTTTTCTTCCEEECCS-SCCCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-TTTT
T ss_pred CCCCcEEEeCCC-CccccC-----HHHhcCCcCCCEEECCC-CCCCccCh-hHhCCcchhhEEECCCC-ccceeC-HHHh
Confidence 478999999984 443211 11123468999999999 46654211 12245889999999986 454211 1123
Q ss_pred HhCCCCcEEecCCCC
Q 023841 163 KNCKHIIDLNLSGCK 177 (276)
Q Consensus 163 ~~~~~L~~L~l~~c~ 177 (276)
..+++|++|+++++.
T Consensus 102 ~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 102 DNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTCTTCSEEECCSSC
T ss_pred ccccCCCEEEeCCCC
Confidence 368899999999963
No 156
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.44 E-value=0.0036 Score=54.50 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=32.4
Q ss_pred HHHHHhcCCCHhhhHHHhccCHHHHHHHhcCCCCccEE
Q 023841 25 VIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVI 62 (276)
Q Consensus 25 il~~if~~L~~~~l~~~~~v~~~~~~~~~~~~~~~~~l 62 (276)
++.+||+||+..++.++++||+.|+. ++.+...|+.+
T Consensus 22 ~~~~i~~~l~~~~l~~~~~v~~~w~~-~~~~~~~w~~~ 58 (435)
T 1p22_A 22 IAENILSYLDAKSLCAAELVCKEWYR-VTSDGMLWKKL 58 (435)
T ss_dssp HHHHHHTTCCHHHHHHHHHHCHHHHH-HHHHTTHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHH-HhcChHHHHHH
Confidence 99999999999999999999999765 56667788865
No 157
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=95.40 E-value=0.01 Score=51.74 Aligned_cols=46 Identities=13% Similarity=0.126 Sum_probs=36.1
Q ss_pred CCCCCCCcHHHHHHHhcCCCHhhhHHHhccCHHHHHHHhcCCCCccEE
Q 023841 15 ETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVI 62 (276)
Q Consensus 15 ~~~~~~~~p~il~~if~~L~~~~l~~~~~v~~~~~~~~~~~~~~~~~l 62 (276)
..++.+| +|++.+||+||+..++.++++||+.|+. ++.+...|+.+
T Consensus 17 d~~~~lp-~e~~~~i~~~l~~~~l~~~~~v~~~~~~-~~~~~~~w~~~ 62 (445)
T 2ovr_B 17 DFISLLP-KELALYVLSFLEPKDLLQAAQTCRYWRI-LAEDNLLWREK 62 (445)
T ss_dssp STTTSSC-HHHHHHHHTTSCHHHHHHHTTSCHHHHH-HHTCSHHHHHH
T ss_pred ChhHHCC-HHHHHHHHHhCCHHHHHHHHHHhHHHHh-hcCchhHhhhh
Confidence 4455555 6899999999999999999999999764 55666666653
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=94.81 E-value=0.0036 Score=53.02 Aligned_cols=63 Identities=17% Similarity=0.267 Sum_probs=29.9
Q ss_pred ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCC
Q 023841 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWN 150 (276)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~ 150 (276)
..+++|+.|++++.+.++.. .......+++|+.|+|++ +.++...-.. ...+++|+.|+|+++
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~-----~~~~~~~l~~L~~L~l~~-N~l~~~~~~~-~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHL-----ELRDLRGLGELRNLTIVK-SGLRFVAPDA-FHFTPRLSRLNLSFN 90 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEE-----CGGGSCSCCCCSEEECCS-SCCCEECTTG-GGSCSCCCEEECCSS
T ss_pred CCCCCeeEEEccCCCCCCCc-----ChhHhccccCCCEEECCC-CccceeCHHH-hcCCcCCCEEeCCCC
Confidence 45566777777642333221 111112346666666666 3444311111 123566666666654
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.70 E-value=0.0028 Score=55.19 Aligned_cols=14 Identities=7% Similarity=0.074 Sum_probs=9.7
Q ss_pred cccCCCccEEeccC
Q 023841 80 IPRYRHVREINLEF 93 (276)
Q Consensus 80 ~~~~~~L~~L~l~~ 93 (276)
...|++|+.+++.+
T Consensus 176 F~~c~~L~~l~l~~ 189 (401)
T 4fdw_A 176 FYYCYNLKKADLSK 189 (401)
T ss_dssp TTTCTTCCEEECTT
T ss_pred hhCcccCCeeecCC
Confidence 35677777777764
No 160
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=94.67 E-value=0.00023 Score=60.78 Aligned_cols=14 Identities=7% Similarity=-0.130 Sum_probs=9.3
Q ss_pred CCCCccEEecCCcc
Q 023841 55 YPSLWLVIDLREMN 68 (276)
Q Consensus 55 ~~~~~~~l~l~~~~ 68 (276)
..+.++.++++++.
T Consensus 52 ~l~~L~~L~Ls~N~ 65 (350)
T 4ay9_X 52 GFGDLEKIEISQND 65 (350)
T ss_dssp TCTTCCEEEEECCT
T ss_pred CCCCCCEEECcCCC
Confidence 34567778877654
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=94.16 E-value=0.0046 Score=52.32 Aligned_cols=84 Identities=18% Similarity=0.120 Sum_probs=49.8
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCC
Q 023841 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ 192 (276)
Q Consensus 113 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~ 192 (276)
+.+|+.|++++.+.++...-.. ...+++|+.|+|+++ .++.-.-. ...++++|+.|+|+++ .++.-. ..++...
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~~- 103 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKS-GLRFVAPD-AFHFTPRLSRLNLSFN-ALESLS-WKTVQGL- 103 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGG-SCSCCCCSEEECCSS-CCCEECTT-GGGSCSCCCEEECCSS-CCSCCC-STTTCSC-
T ss_pred CCCeeEEEccCCCCCCCcChhH-hccccCCCEEECCCC-ccceeCHH-HhcCCcCCCEEeCCCC-ccceeC-HHHcccC-
Confidence 4678999998634555422112 234788999999876 45432111 2246888999999886 444111 0112223
Q ss_pred CccEEecCCC
Q 023841 193 ELESLNLTRY 202 (276)
Q Consensus 193 ~L~~L~l~~c 202 (276)
.|+.|++.++
T Consensus 104 ~L~~l~l~~N 113 (347)
T 2ifg_A 104 SLQELVLSGN 113 (347)
T ss_dssp CCCEEECCSS
T ss_pred CceEEEeeCC
Confidence 3889999886
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=93.94 E-value=0.0021 Score=55.97 Aligned_cols=12 Identities=17% Similarity=0.202 Sum_probs=7.3
Q ss_pred CCCCccEEecCC
Q 023841 112 SLQDLESLNLNG 123 (276)
Q Consensus 112 ~~~~L~~L~l~~ 123 (276)
.|++|+.++++.
T Consensus 178 ~c~~L~~l~l~~ 189 (401)
T 4fdw_A 178 YCYNLKKADLSK 189 (401)
T ss_dssp TCTTCCEEECTT
T ss_pred CcccCCeeecCC
Confidence 346666666654
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=88.46 E-value=0.042 Score=47.36 Aligned_cols=103 Identities=11% Similarity=0.240 Sum_probs=50.4
Q ss_pred ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCC-CCcCHHHHH
Q 023841 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWN-VRVTDIGIQ 159 (276)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~-~~l~~~~l~ 159 (276)
..|.+|+.+.+... +. .|...+-..+++|+.+.+.. .++.-+-. ....|.+|+.+.+... +.+.+..
T Consensus 262 ~~c~~L~~i~lp~~--~~-----~I~~~aF~~c~~L~~i~l~~--~i~~I~~~-aF~~c~~L~~i~lp~~v~~I~~~a-- 329 (394)
T 4gt6_A 262 DSCAYLASVKMPDS--VV-----SIGTGAFMNCPALQDIEFSS--RITELPES-VFAGCISLKSIDIPEGITQILDDA-- 329 (394)
T ss_dssp TTCSSCCEEECCTT--CC-----EECTTTTTTCTTCCEEECCT--TCCEECTT-TTTTCTTCCEEECCTTCCEECTTT--
T ss_pred eecccccEEecccc--cc-----eecCcccccccccccccCCC--cccccCce-eecCCCCcCEEEeCCcccEehHhH--
Confidence 45566666666531 11 12222223356677777753 22211111 1234777777777531 2232222
Q ss_pred HHHHhCCCCcEEecCCC-CCCCHHHHHHHHhcCCCccEEecCC
Q 023841 160 HLVKNCKHIIDLNLSGC-KNLLDKSLQLIADNYQELESLNLTR 201 (276)
Q Consensus 160 ~l~~~~~~L~~L~l~~c-~~ltd~~~~~l~~~~~~L~~L~l~~ 201 (276)
..+|.+|+++.+... ..|.+.. +.+|++|+.+.+.+
T Consensus 330 --F~~C~~L~~i~ip~sv~~I~~~a----F~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 330 --FAGCEQLERIAIPSSVTKIPESA----FSNCTALNNIEYSG 366 (394)
T ss_dssp --TTTCTTCCEEEECTTCCBCCGGG----GTTCTTCCEEEESS
T ss_pred --hhCCCCCCEEEECcccCEEhHhH----hhCCCCCCEEEECC
Confidence 236777777777532 2233332 23577777777766
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=88.03 E-value=0.056 Score=46.54 Aligned_cols=124 Identities=13% Similarity=0.227 Sum_probs=67.4
Q ss_pred cCCCCccEEecCCccCcchhhHHHhccccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCC-CCCCHHHH
Q 023841 54 SYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGC-QKISDKGI 132 (276)
Q Consensus 54 ~~~~~~~~l~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c-~~l~~~~~ 132 (276)
..+..++.+.+...... +...+...|++|+.+.+... ++ .|...+-..|.+|+++.+... ..+.+.
T Consensus 262 ~~c~~L~~i~lp~~~~~----I~~~aF~~c~~L~~i~l~~~--i~-----~I~~~aF~~c~~L~~i~lp~~v~~I~~~-- 328 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVS----IGTGAFMNCPALQDIEFSSR--IT-----ELPESVFAGCISLKSIDIPEGITQILDD-- 328 (394)
T ss_dssp TTCSSCCEEECCTTCCE----ECTTTTTTCTTCCEEECCTT--CC-----EECTTTTTTCTTCCEEECCTTCCEECTT--
T ss_pred eecccccEEecccccce----ecCcccccccccccccCCCc--cc-----ccCceeecCCCCcCEEEeCCcccEehHh--
Confidence 34555666665443211 11222467899999998742 22 223333345689999999752 223332
Q ss_pred HHHHhhCCCCCeEeccCC-CCcCHHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEecCC
Q 023841 133 EIISSTCPELKVFSIYWN-VRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR 201 (276)
Q Consensus 133 ~~l~~~~~~L~~L~L~~~-~~l~~~~l~~l~~~~~~L~~L~l~~c~~ltd~~~~~l~~~~~~L~~L~l~~ 201 (276)
....|.+|+++.+... ..+.+.. ..+|++|+.+.+.+. . ..... ...|..|+.+.+..
T Consensus 329 --aF~~C~~L~~i~ip~sv~~I~~~a----F~~C~~L~~i~~~~~--~--~~~~~-~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 329 --AFAGCEQLERIAIPSSVTKIPESA----FSNCTALNNIEYSGS--R--SQWNA-ISTDSGLQNLPVAP 387 (394)
T ss_dssp --TTTTCTTCCEEEECTTCCBCCGGG----GTTCTTCCEEEESSC--H--HHHHT-CBCCCCC-------
T ss_pred --HhhCCCCCCEEEECcccCEEhHhH----hhCCCCCCEEEECCc--e--eehhh-hhccCCCCEEEeCC
Confidence 2345999999999642 2343332 248999999999874 1 11222 23477788877754
No 165
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=75.31 E-value=0.1 Score=44.44 Aligned_cols=13 Identities=8% Similarity=0.222 Sum_probs=7.7
Q ss_pred ccCCCccEEeccC
Q 023841 81 PRYRHVREINLEF 93 (276)
Q Consensus 81 ~~~~~L~~L~l~~ 93 (276)
..+.+|+.+.+..
T Consensus 214 ~~~~~l~~i~~~~ 226 (379)
T 4h09_A 214 SYGKNLKKITITS 226 (379)
T ss_dssp TTCSSCSEEECCT
T ss_pred ccccccceeeecc
Confidence 4556666666653
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=75.04 E-value=0.23 Score=42.67 Aligned_cols=102 Identities=15% Similarity=0.159 Sum_probs=53.5
Q ss_pred hCCCCCeEeccCCCCcCHHHHHHHHHhCCCCcEEecCCC-CCCCHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHHhc
Q 023841 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGC-KNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSN 216 (276)
Q Consensus 138 ~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~l~~c-~~ltd~~~~~l~~~~~~L~~L~l~~c~~it~~~l~~l~~~ 216 (276)
.|+.++.+..... .+.+. ....|.+|+.+.+... ..|.+.. +..|++|+.++|.. .++.-+
T Consensus 274 ~~~~l~~~~~~~~-~i~~~----~F~~~~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~--~v~~I~------- 335 (394)
T 4fs7_A 274 NCSGLKKVIYGSV-IVPEK----TFYGCSSLTEVKLLDSVKFIGEEA----FESCTSLVSIDLPY--LVEEIG------- 335 (394)
T ss_dssp TCTTCCEEEECSS-EECTT----TTTTCTTCCEEEECTTCCEECTTT----TTTCTTCCEECCCT--TCCEEC-------
T ss_pred cccccceeccCce-eeccc----cccccccccccccccccceechhh----hcCCCCCCEEEeCC--cccEEh-------
Confidence 4666777666532 23222 2236778888877542 1222222 23577888887754 232211
Q ss_pred CchhhHHHHHcCCCccceecccccCCCCCcceeEEEeeccCCCCceeeeecc
Q 023841 217 NILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIET 268 (276)
Q Consensus 217 ~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~ 268 (276)
...+.+|.+|+.+.+..+. ... + ...+ .+|++|+++.+...
T Consensus 336 ------~~aF~~c~~L~~i~lp~~l-~~I-~-~~aF--~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 336 ------KRSFRGCTSLSNINFPLSL-RKI-G-ANAF--QGCINLKKVELPKR 376 (394)
T ss_dssp ------TTTTTTCTTCCEECCCTTC-CEE-C-TTTB--TTCTTCCEEEEEGG
T ss_pred ------HHhccCCCCCCEEEECccc-cEe-h-HHHh--hCCCCCCEEEECCC
Confidence 1246677777777764321 100 1 1123 67788888777554
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=61.64 E-value=0.36 Score=41.00 Aligned_cols=104 Identities=14% Similarity=0.208 Sum_probs=63.4
Q ss_pred cccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCC--CCcCHHH
Q 023841 80 IPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWN--VRVTDIG 157 (276)
Q Consensus 80 ~~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~--~~l~~~~ 157 (276)
...|..|+.+.+... ++ .|...+...+.+|+.+.+.. .+..-+-. ....|++|+.+.+.+. ..+.+..
T Consensus 236 f~~~~~L~~i~lp~~--v~-----~I~~~aF~~~~~l~~i~l~~--~i~~i~~~-aF~~c~~L~~i~l~~~~i~~I~~~a 305 (379)
T 4h09_A 236 FYGMKALDEIAIPKN--VT-----SIGSFLLQNCTALKTLNFYA--KVKTVPYL-LCSGCSNLTKVVMDNSAIETLEPRV 305 (379)
T ss_dssp TTTCSSCCEEEECTT--CC-----EECTTTTTTCTTCCEEEECC--CCSEECTT-TTTTCTTCCEEEECCTTCCEECTTT
T ss_pred ccCCccceEEEcCCC--cc-----EeCccccceeehhccccccc--cceecccc-ccccccccccccccccccceehhhh
Confidence 357888999888652 22 22233334468899998865 23322211 2345899999998753 2344332
Q ss_pred HHHHHHhCCCCcEEecCC-CCCCCHHHHHHHHhcCCCccEEecCC
Q 023841 158 IQHLVKNCKHIIDLNLSG-CKNLLDKSLQLIADNYQELESLNLTR 201 (276)
Q Consensus 158 l~~l~~~~~~L~~L~l~~-c~~ltd~~~~~l~~~~~~L~~L~l~~ 201 (276)
..+|.+|+.+.+.. ...|.+.. +..|++|+.+.+..
T Consensus 306 ----F~~c~~L~~i~lp~~l~~I~~~a----F~~C~~L~~i~ip~ 342 (379)
T 4h09_A 306 ----FMDCVKLSSVTLPTALKTIQVYA----FKNCKALSTISYPK 342 (379)
T ss_dssp ----TTTCTTCCEEECCTTCCEECTTT----TTTCTTCCCCCCCT
T ss_pred ----hcCCCCCCEEEcCccccEEHHHH----hhCCCCCCEEEECC
Confidence 24789999999964 22333333 23689999988854
No 168
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=61.20 E-value=0.41 Score=41.06 Aligned_cols=101 Identities=11% Similarity=0.202 Sum_probs=59.8
Q ss_pred ccCCCccEEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCCeEeccCC-CCcCHHHHH
Q 023841 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWN-VRVTDIGIQ 159 (276)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~~~~~~i~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~L~~~-~~l~~~~l~ 159 (276)
..+..++.+.+.. ..+.+ .+...+.+|+.+.+... ++.-+-. ....|.+|+.+++... ..+.+..
T Consensus 273 ~~~~~l~~~~~~~-~~i~~--------~~F~~~~~L~~i~l~~~--i~~I~~~-aF~~c~~L~~i~lp~~v~~I~~~a-- 338 (394)
T 4fs7_A 273 YNCSGLKKVIYGS-VIVPE--------KTFYGCSSLTEVKLLDS--VKFIGEE-AFESCTSLVSIDLPYLVEEIGKRS-- 338 (394)
T ss_dssp TTCTTCCEEEECS-SEECT--------TTTTTCTTCCEEEECTT--CCEECTT-TTTTCTTCCEECCCTTCCEECTTT--
T ss_pred ccccccceeccCc-eeecc--------ccccccccccccccccc--cceechh-hhcCCCCCCEEEeCCcccEEhHHh--
Confidence 5677777777654 22322 22234588999998752 2221111 1345899999998642 2233222
Q ss_pred HHHHhCCCCcEEecCCC-CCCCHHHHHHHHhcCCCccEEecCC
Q 023841 160 HLVKNCKHIIDLNLSGC-KNLLDKSLQLIADNYQELESLNLTR 201 (276)
Q Consensus 160 ~l~~~~~~L~~L~l~~c-~~ltd~~~~~l~~~~~~L~~L~l~~ 201 (276)
..+|.+|+.+.+... ..|.+.. +..|++|+.+.+..
T Consensus 339 --F~~c~~L~~i~lp~~l~~I~~~a----F~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 339 --FRGCTSLSNINFPLSLRKIGANA----FQGCINLKKVELPK 375 (394)
T ss_dssp --TTTCTTCCEECCCTTCCEECTTT----BTTCTTCCEEEEEG
T ss_pred --ccCCCCCCEEEECccccEehHHH----hhCCCCCCEEEECC
Confidence 237899999998653 2232322 34689999999865
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=43.68 E-value=7 Score=27.58 Aligned_cols=12 Identities=8% Similarity=0.019 Sum_probs=5.5
Q ss_pred CCCCcEEecCCC
Q 023841 165 CKHIIDLNLSGC 176 (276)
Q Consensus 165 ~~~L~~L~l~~c 176 (276)
+++|+.|+|+++
T Consensus 54 l~~L~~L~L~~N 65 (130)
T 3rfe_A 54 LPALRTAHLGAN 65 (130)
T ss_dssp CTTCCEEECCSS
T ss_pred ccccCEEEecCC
Confidence 344444444443
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=29.15 E-value=39 Score=22.43 Aligned_cols=12 Identities=8% Similarity=0.387 Sum_probs=5.5
Q ss_pred HcCCCccceecc
Q 023841 226 YHGIRFFQAVQI 237 (276)
Q Consensus 226 ~~~~~~L~~l~l 237 (276)
+.+|.+|+.+.+
T Consensus 39 F~~C~~L~~i~~ 50 (100)
T 2lz0_A 39 FSGCTALEKLIL 50 (100)
T ss_dssp STTCTTCCCEEE
T ss_pred HhccCCccEEEE
Confidence 444444444444
Done!