Query 023843
Match_columns 276
No_of_seqs 185 out of 1175
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 13:42:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023843.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023843hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wlj_A Interferon stimulated g 100.0 1.1E-31 3.8E-36 227.7 17.5 163 79-241 4-172 (189)
2 2gui_A DNA polymerase III epsi 100.0 5.7E-30 2E-34 217.4 15.8 165 76-244 5-191 (194)
3 2p1j_A POLIII, DNA polymerase 100.0 9.2E-30 3.1E-34 215.2 15.1 157 77-238 9-176 (186)
4 1w0h_A 3'-5' exonuclease ERI1; 100.0 1.1E-28 3.7E-33 210.9 13.7 158 79-237 9-194 (204)
5 3mxm_B Three prime repair exon 100.0 1.5E-28 5.3E-33 216.2 13.2 165 78-243 10-220 (242)
6 1y97_A Three prime repair exon 99.9 1.6E-26 5.4E-31 202.2 17.5 161 79-240 9-212 (238)
7 1zbh_A 3'-5' exonuclease ERI1; 99.9 9.6E-27 3.3E-31 210.7 16.0 158 79-237 77-262 (299)
8 2xri_A ERI1 exoribonuclease 3; 99.9 4.3E-27 1.5E-31 204.5 12.6 157 79-236 30-212 (224)
9 3u3y_B Three prime repair exon 99.9 1E-26 3.4E-31 210.8 15.2 167 78-245 10-222 (314)
10 2f96_A Ribonuclease T; RNAse, 99.9 6.3E-26 2.2E-30 196.9 14.4 159 78-240 27-215 (224)
11 1zbu_A ERI-1 homolog, 3'-5' ex 99.9 2.9E-26 9.8E-31 211.5 12.2 160 77-237 125-312 (349)
12 3cg7_A CRN-4, cell death-relat 99.9 2.8E-26 9.7E-31 208.4 10.7 158 78-236 17-207 (308)
13 3v9w_A Ribonuclease T; DEDD nu 99.9 2.6E-25 9E-30 194.3 14.7 159 78-240 35-223 (235)
14 2igi_A Oligoribonuclease; RNAs 99.9 4E-25 1.4E-29 185.4 12.8 147 79-238 4-177 (180)
15 2gbz_A Oligoribonuclease; ORN, 99.9 1.5E-24 5.1E-29 184.5 12.2 147 79-240 8-183 (194)
16 3tr8_A Oligoribonuclease; tran 99.9 1.4E-24 4.9E-29 183.5 10.0 147 79-238 8-181 (186)
17 2qxf_A Exodeoxyribonuclease I; 99.9 3.7E-24 1.3E-28 204.6 13.0 167 80-249 9-212 (482)
18 2kfn_A Klenow fragment of DNA 99.2 4E-10 1.4E-14 110.7 14.8 142 80-240 26-195 (605)
19 1x9m_A DNA polymerase; DNA plo 99.0 1.7E-10 5.8E-15 115.1 5.9 131 82-237 1-182 (698)
20 4dfk_A DNA polymerase I, therm 98.8 8E-09 2.7E-13 100.0 7.9 120 79-238 9-128 (540)
21 4hec_A Putative uncharacterize 98.8 9E-08 3.1E-12 80.4 12.9 148 79-237 21-181 (190)
22 3saf_A Exosome component 10; e 98.7 6.9E-08 2.4E-12 90.9 12.5 134 79-241 128-280 (428)
23 4gmj_B CCR4-NOT transcription 98.7 2.4E-07 8.3E-12 82.5 13.6 152 81-238 35-245 (285)
24 3pv8_A DNA polymerase I; DNA p 98.5 2.2E-07 7.5E-12 90.9 8.9 133 79-240 28-183 (592)
25 2e6m_A Werner syndrome ATP-dep 98.4 1.7E-06 5.8E-11 73.2 10.2 135 80-241 40-198 (208)
26 1yt3_A Ribonuclease D, RNAse D 98.3 5E-06 1.7E-10 76.9 13.2 132 80-240 22-172 (375)
27 2hbj_A Exosome complex exonucl 98.3 3.9E-06 1.3E-10 78.6 12.5 133 79-240 105-256 (410)
28 2d5r_A CCR4-NOT transcription 98.2 2.1E-05 7.3E-10 68.7 14.2 154 81-238 25-235 (252)
29 1vk0_A Hypothetical protein; h 98.2 1.9E-06 6.5E-11 73.4 6.4 132 80-236 46-205 (206)
30 1uoc_A POP2; hydrolase, DEDD n 98.2 2.5E-05 8.4E-10 69.6 13.7 156 80-237 38-264 (289)
31 2p51_A SPCC18.06C protein; DED 98.2 3.7E-05 1.3E-09 69.4 14.2 155 80-238 45-256 (333)
32 3cym_A Uncharacterized protein 98.1 4.1E-05 1.4E-09 72.3 14.6 132 81-240 39-189 (440)
33 1qht_A Protein (DNA polymerase 97.8 0.0003 1E-08 70.8 15.6 141 78-235 133-327 (775)
34 1noy_A Protein (DNA polymerase 97.6 0.0012 4.2E-08 61.0 15.2 157 77-234 103-335 (388)
35 3iay_A DNA polymerase delta ca 97.4 0.0019 6.6E-08 66.1 14.3 147 77-234 246-465 (919)
36 2gv9_A DNA polymerase; polymer 97.3 0.0026 9E-08 66.7 14.6 94 140-234 396-550 (1193)
37 1s5j_A DNA polymerase I; repli 97.3 0.0061 2.1E-07 61.9 15.8 147 77-231 187-386 (847)
38 3qex_A DNA polymerase, GP43; d 97.2 0.0068 2.3E-07 61.7 15.3 160 74-234 102-338 (903)
39 3k59_A POL II, DNA polymerase 97.1 0.0089 3E-07 60.2 15.1 146 75-234 148-349 (786)
40 3d45_A Poly(A)-specific ribonu 96.9 0.0012 4.2E-08 63.2 6.7 82 157-239 275-393 (507)
41 2a1r_A Poly(A)-specific ribonu 96.9 0.0028 9.5E-08 59.5 8.9 98 138-238 263-397 (430)
42 1bgx_T TAQ DNA polymerase; DNA 95.5 0.022 7.6E-07 57.7 7.3 79 150-239 340-421 (832)
43 3q7c_A Nucleoprotein; deddh ex 94.0 0.53 1.8E-05 39.4 10.4 144 76-227 53-211 (243)
44 3ikm_A DNA polymerase subunit 93.9 0.031 1.1E-06 57.3 3.5 33 158-190 194-230 (1172)
45 3mwp_A Nucleoprotein; structur 90.3 2 6.8E-05 39.8 10.3 144 76-227 387-545 (577)
46 2py5_A DNA polymerase; protein 85.8 1.5 5E-05 42.5 6.9 17 158-174 55-71 (575)
47 2a1r_A Poly(A)-specific ribonu 27.3 26 0.0009 32.3 2.1 39 81-120 23-94 (430)
48 3d45_A Poly(A)-specific ribonu 24.0 32 0.0011 32.4 2.1 40 81-121 25-97 (507)
No 1
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=99.98 E-value=1.1e-31 Score=227.66 Aligned_cols=163 Identities=37% Similarity=0.628 Sum_probs=136.9
Q ss_pred CCcEEEEEEeccCCCCCCeeEEEEEEEEeCCCcEEEEEeecCCcccccccccccCCCHHHhcCCCCHHHHHHHHHHHhcC
Q 023843 79 LTDVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEG 158 (276)
Q Consensus 79 ~~~~VaiD~EttG~~~~~iiei~~v~v~~~~g~ii~~~~v~P~~~i~~~~~~i~GIt~~~l~~a~~~~ev~~~l~~~l~~ 158 (276)
..++|+|||||||+++....+|+.|.+++.+|+++|+.||+|..+|+++++.+||||++++.++++|.+|+.+|.+|+++
T Consensus 4 ~~~~vviD~ETTGl~~~~~~~iiei~~v~~~g~~i~~~lV~P~~~i~~~~~~i~GIt~~~l~~a~~~~~v~~~~~~~l~~ 83 (189)
T 1wlj_A 4 SREVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGATPFAVARLEILQLLKG 83 (189)
T ss_dssp --CEEEEEEEEEEETTTTEEEEEEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTCEEHHHHHHHHHHHHTT
T ss_pred CCeEEEEEeECcCcCCCCCceEEEEEEEeCCCCEEEeeEecCCCCCCccccCCCCCCHHHHcCCCCHHHHHHHHHHHHCC
Confidence 35799999999999865433444455566779999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEchhhHHHHhcccCCCCceeehhhhchhh----hCCCCCccHHHHHHHHhCCcCCCC--CCChHHHHHHHHHHHH
Q 023843 159 RILVGHALHNDLKALLLTHSKKDLRDTSEYQPFL----NRNGRSKALRHLAAEILAVEIQNG--EHCPIDDARAAMLLYM 232 (276)
Q Consensus 159 ~~lVgHn~~~D~~~L~~~~~~~~~~Dt~~~~~~~----~~~~~~~sL~~La~~~lgi~~~~~--~H~Al~DA~at~~L~~ 232 (276)
.++||||+.||+.||...++...++||+.+.... .+...+++|+.|+..+||++++++ +|+|++||++|++||.
T Consensus 84 ~~lV~hn~~fD~~~L~~~~~~~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~~~~~~H~Al~Da~ata~l~~ 163 (189)
T 1wlj_A 84 KLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQ 163 (189)
T ss_dssp SEEEESSHHHHHHHTTCCCTTCEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCTTCCCHHHHHHHHHHHHH
T ss_pred CEEEECCcHHHHHHHHHhCCCCceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 9999999999999999888877799999875432 223478999999955689999854 8999999999999999
Q ss_pred HhHHHHHHH
Q 023843 233 KNRKQWEKS 241 (276)
Q Consensus 233 ~l~~~~e~~ 241 (276)
++...|+..
T Consensus 164 ~l~~~~~~~ 172 (189)
T 1wlj_A 164 ISQRIRARR 172 (189)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999888754
No 2
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=99.97 E-value=5.7e-30 Score=217.45 Aligned_cols=165 Identities=19% Similarity=0.221 Sum_probs=135.8
Q ss_pred CCCCCcEEEEEEeccCCCC-------CCeeEEEEEEEEeCCCcEE---EEEeecCCcccccccccccCCCHHHhcCCCCH
Q 023843 76 DFSLTDVVAMDCEMVGISQ-------GNKSALGRVSLVNKWGNLI---YDEFVRPLERVVDFRTRISGIRPRDLRKAKDF 145 (276)
Q Consensus 76 ~~~~~~~VaiD~EttG~~~-------~~iiei~~v~v~~~~g~ii---~~~~v~P~~~i~~~~~~i~GIt~~~l~~a~~~ 145 (276)
..+.+++|+|||||||+++ ++|+|||+|.+.+ |.++ |+.||+|..+++++++.+||||++++.++++|
T Consensus 5 ~~m~~~~vviD~ETTGl~~~~~~~~~~~Iieig~v~~~~--~~~~~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~ 82 (194)
T 2gui_A 5 STAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVN--RRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTF 82 (194)
T ss_dssp ---CCEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEET--TEECSCCEEEECCCSSCCCHHHHHHHCCCHHHHTTSCCH
T ss_pred ccccCCEEEEEeeCCCCCCcccCCCCCEEEEEEEEEEEC--CeEeccEEEEEECcCCcCCHHHHHhhCcCHHHHhCCCCH
Confidence 3455789999999999987 5899999998864 6653 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEchhhHHHHhc-------ccCCC----CceeehhhhchhhhCCCCCccHHHHHHHHhCCcCC
Q 023843 146 PTVQKKVAELIEGRILVGHALHNDLKALL-------LTHSK----KDLRDTSEYQPFLNRNGRSKALRHLAAEILAVEIQ 214 (276)
Q Consensus 146 ~ev~~~l~~~l~~~~lVgHn~~~D~~~L~-------~~~~~----~~~~Dt~~~~~~~~~~~~~~sL~~La~~~lgi~~~ 214 (276)
.+|+.+|.+|+++.++||||+.||+.+|. +..|. ..++||..+++.+.+. ..++|.+|+ ++||++..
T Consensus 83 ~~v~~~~~~~l~~~~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p~-~~~~L~~l~-~~~gi~~~ 160 (194)
T 2gui_A 83 AEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPG-KRNSLDALC-ARYEIDNS 160 (194)
T ss_dssp HHHHHHHHHHHTTSEEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTT-SCCSHHHHH-HHTTCCCT
T ss_pred HHHHHHHHHHHCCCeEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHcCC-CCCCHHHHH-HHcCcCCC
Confidence 99999999999999999999999999997 22221 4689999888777754 357999999 78999987
Q ss_pred C-CCCChHHHHHHHHHHHHHhHHHHHHHHHH
Q 023843 215 N-GEHCPIDDARAAMLLYMKNRKQWEKSVKD 244 (276)
Q Consensus 215 ~-~~H~Al~DA~at~~L~~~l~~~~e~~~~~ 244 (276)
+ .+|+|++||++|++||.++..+++..+.+
T Consensus 161 ~~~~H~Al~Da~~ta~l~~~l~~~~~~~~~~ 191 (194)
T 2gui_A 161 KRTLHGALLDAQILAEVYLAMTGGQTSMATR 191 (194)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHTC--------
T ss_pred CCCCCChHHHHHHHHHHHHHHHhccchhhhc
Confidence 5 48999999999999999998887765443
No 3
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=99.97 E-value=9.2e-30 Score=215.20 Aligned_cols=157 Identities=22% Similarity=0.333 Sum_probs=136.6
Q ss_pred CCCCcEEEEEEeccCCCC--CCeeEEEEEEEEeCCCcEE--EEEeecCCcccccccccccCCCHHHhcCCCCHHHHHHHH
Q 023843 77 FSLTDVVAMDCEMVGISQ--GNKSALGRVSLVNKWGNLI--YDEFVRPLERVVDFRTRISGIRPRDLRKAKDFPTVQKKV 152 (276)
Q Consensus 77 ~~~~~~VaiD~EttG~~~--~~iiei~~v~v~~~~g~ii--~~~~v~P~~~i~~~~~~i~GIt~~~l~~a~~~~ev~~~l 152 (276)
....++|+|||||||+++ ++|+|||+|.+.+ |+++ |+.||+|..+++++++.+||||++++.++++|.+|+.+|
T Consensus 9 l~~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~--g~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~~v~~~~ 86 (186)
T 2p1j_A 9 FGDATFVVLDFETTGLDPQVDEIIEIGAVKIQG--GQIVDEYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVLPEF 86 (186)
T ss_dssp ----CEEEEEEEESCSCTTTCCEEEEEEEEEET--TEEEEEEEEECBCSSCCCHHHHHHHCCCHHHHTTCCBHHHHHHHH
T ss_pred CcCCCEEEEEEECCCCCCCCCeEEEEEEEEEEC--CEEEEEEEEEECcCCCCCHHHhhhcCCCHHHHhcCCCHHHHHHHH
Confidence 345689999999999984 4899999988864 7776 999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEEEchhhHHHHhc-------ccCCCCceeehhhhchhhhCCCCCccHHHHHHHHhCCcCCCCCCChHHHHH
Q 023843 153 AELIEGRILVGHALHNDLKALL-------LTHSKKDLRDTSEYQPFLNRNGRSKALRHLAAEILAVEIQNGEHCPIDDAR 225 (276)
Q Consensus 153 ~~~l~~~~lVgHn~~~D~~~L~-------~~~~~~~~~Dt~~~~~~~~~~~~~~sL~~La~~~lgi~~~~~~H~Al~DA~ 225 (276)
.+|+++.++||||+.||+.+|. +..+...++||+.+++.+. ...+++|..|+ ++||++.. ++|+|++||+
T Consensus 87 ~~~l~~~~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~~-~~~~~~L~~l~-~~~gi~~~-~~H~Al~Da~ 163 (186)
T 2p1j_A 87 LGFLEDSIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLL-KLRSYSLDSVV-EKLGLGPF-RHHRALDDAR 163 (186)
T ss_dssp HHHSSSCEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHT-CCSCCSHHHHH-HHTTCCST-TCCHHHHHHH
T ss_pred HHHHCCCEEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHHHHh-hcCCCCHHHHH-HHcCCCCC-CCcCHHHHHH
Confidence 9999999999999999999996 3333456899999888776 66789999999 68999987 6899999999
Q ss_pred HHHHHHHHhHHHH
Q 023843 226 AAMLLYMKNRKQW 238 (276)
Q Consensus 226 at~~L~~~l~~~~ 238 (276)
+|++||.++....
T Consensus 164 ~t~~l~~~l~~~~ 176 (186)
T 2p1j_A 164 VTAQVFLRFVEMM 176 (186)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999886553
No 4
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=99.96 E-value=1.1e-28 Score=210.94 Aligned_cols=158 Identities=18% Similarity=0.220 Sum_probs=135.5
Q ss_pred CCcEEEEEEeccCCCC------CCeeEEEEEEEEeCCCcEE--EEEeecCCc--ccccccccccCCCHHHhcCCCCHHHH
Q 023843 79 LTDVVAMDCEMVGISQ------GNKSALGRVSLVNKWGNLI--YDEFVRPLE--RVVDFRTRISGIRPRDLRKAKDFPTV 148 (276)
Q Consensus 79 ~~~~VaiD~EttG~~~------~~iiei~~v~v~~~~g~ii--~~~~v~P~~--~i~~~~~~i~GIt~~~l~~a~~~~ev 148 (276)
...||+||+||||+++ ++|+|||+|.+...+|+++ |+.||+|.. +++++++.+||||++++.++++|.+|
T Consensus 9 ~~~~vviD~ETTGl~~~~~~~~~~Iieigav~~~~~~g~i~~~f~~lv~P~~~~~i~~~~~~i~GIt~~~l~~~~~~~~v 88 (204)
T 1w0h_A 9 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQV 88 (204)
T ss_dssp SSEEEECCCEECCCTTCCTTSCCCEEEEEEEEEETTTCSEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHHH
T ss_pred cCEEEEEEEecCCcCCCCCCCCCcEEEEEEEEEECCCCEEeeeeeeEECCCCCCccCHHHHHHhCCCHHHHhCCCCHHHH
Confidence 5679999999999985 5899999888853468887 999999998 89999999999999999999999999
Q ss_pred HHHHHHHhcCCe-------EEEEchhhHHH-Hhc-------ccCCCC--ceeehhhhchhhhCC-CCCccHHHHHHHHhC
Q 023843 149 QKKVAELIEGRI-------LVGHALHNDLK-ALL-------LTHSKK--DLRDTSEYQPFLNRN-GRSKALRHLAAEILA 210 (276)
Q Consensus 149 ~~~l~~~l~~~~-------lVgHn~~~D~~-~L~-------~~~~~~--~~~Dt~~~~~~~~~~-~~~~sL~~La~~~lg 210 (276)
+.+|.+|+++.+ +||||+.||+. ||. +..+.+ .++||..+++.+.+. ..+++|.+|+ ++||
T Consensus 89 ~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~~~~~~L~~l~-~~~g 167 (204)
T 1w0h_A 89 LKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLG 167 (204)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHH-HHTT
T ss_pred HHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCCCccchHHHHH-HHcC
Confidence 999999998654 99999999996 986 344433 689999887766543 3468999998 7899
Q ss_pred CcCCCCCCChHHHHHHHHHHHHHhHHH
Q 023843 211 VEIQNGEHCPIDDARAAMLLYMKNRKQ 237 (276)
Q Consensus 211 i~~~~~~H~Al~DA~at~~L~~~l~~~ 237 (276)
++..+.+|+|++||++|++||.++..+
T Consensus 168 i~~~~~~H~Al~Da~~ta~l~~~l~~~ 194 (204)
T 1w0h_A 168 MDYDGRPHCGLDDSKNIARIAVRMLQD 194 (204)
T ss_dssp CCCCSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCccCcHHHHHHHHHHHHHHHHC
Confidence 998866899999999999999988654
No 5
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=99.96 E-value=1.5e-28 Score=216.16 Aligned_cols=165 Identities=13% Similarity=0.148 Sum_probs=137.6
Q ss_pred CCCcEEEEEEeccCCC--CCCeeEEEEEEEEeCC--------C---------cE--EEEEeecCCcccccccccccCCCH
Q 023843 78 SLTDVVAMDCEMVGIS--QGNKSALGRVSLVNKW--------G---------NL--IYDEFVRPLERVVDFRTRISGIRP 136 (276)
Q Consensus 78 ~~~~~VaiD~EttG~~--~~~iiei~~v~v~~~~--------g---------~i--i~~~~v~P~~~i~~~~~~i~GIt~ 136 (276)
+...||+||+||||++ .++|+|||+|.+.+.. | ++ .|+.||+|..+|+++++.+||||+
T Consensus 10 ~~~~~vv~D~ETTGl~~~~d~IiEIgav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~li~P~~~i~~~~~~i~GIt~ 89 (242)
T 3mxm_B 10 HMQTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSK 89 (242)
T ss_dssp CCSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEECCCSSCCCHHHHHHHCCCH
T ss_pred ccceEEEEEeecCCCCCCCCeeEEEEEEEecCCcccccccccccccccccccchhheeEEEECCCCCCCHHHHHhcCCCH
Confidence 3678999999999998 4699999999987631 1 33 489999999999999999999999
Q ss_pred HHhcCC--CCHH-HHHHHHHHHhcC----CeEEEEch-hhHHHHhc-------ccC--CCCceeehhhhchhhh------
Q 023843 137 RDLRKA--KDFP-TVQKKVAELIEG----RILVGHAL-HNDLKALL-------LTH--SKKDLRDTSEYQPFLN------ 193 (276)
Q Consensus 137 ~~l~~a--~~~~-ev~~~l~~~l~~----~~lVgHn~-~~D~~~L~-------~~~--~~~~~~Dt~~~~~~~~------ 193 (276)
+++.++ |+|. +|+.+|.+|+++ .++||||+ .||+.||. +.. ....++||+.+++.+.
T Consensus 90 ~~l~~~g~p~~~~ev~~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~~~~p~ 169 (242)
T 3mxm_B 90 AELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPS 169 (242)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHHHCC-
T ss_pred HHHHhcCCCchhHHHHHHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHHHHHhhcCcc
Confidence 999988 8996 999999999998 89999996 99999997 222 1235789998877544
Q ss_pred --CCCCCccHHHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHhHHHHHHHHH
Q 023843 194 --RNGRSKALRHLAAEILAVEIQNGEHCPIDDARAAMLLYMKNRKQWEKSVK 243 (276)
Q Consensus 194 --~~~~~~sL~~La~~~lgi~~~~~~H~Al~DA~at~~L~~~l~~~~e~~~~ 243 (276)
+...+++|.+|+.++||++.. .+|+|++||++|++||.++..++....+
T Consensus 170 ~~~~~~~~~L~~l~~~~~gi~~~-~~H~Al~Da~ata~l~~~~~~~~~~~~~ 220 (242)
T 3mxm_B 170 GNGSRKSYSLGSIYTRLYWQAPT-DSHTAEGDDLTLLSICQWKPQALLQWVD 220 (242)
T ss_dssp -----CCCSHHHHHHHHHSSCCS-STTSHHHHHHHHHHHHTSSHHHHHHHHH
T ss_pred ccCCCCCcCHHHHHHHHhCCCCC-CCcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 236789999999777999987 6899999999999999999877665544
No 6
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=99.94 E-value=1.6e-26 Score=202.17 Aligned_cols=161 Identities=16% Similarity=0.201 Sum_probs=130.6
Q ss_pred CCcEEEEEEeccCCCC--CCeeEEEEEEEEeC--------------CCcEE--EEEeecCCcccccccccccCCCHHHh-
Q 023843 79 LTDVVAMDCEMVGISQ--GNKSALGRVSLVNK--------------WGNLI--YDEFVRPLERVVDFRTRISGIRPRDL- 139 (276)
Q Consensus 79 ~~~~VaiD~EttG~~~--~~iiei~~v~v~~~--------------~g~ii--~~~~v~P~~~i~~~~~~i~GIt~~~l- 139 (276)
..++|+|||||||+++ ++|+|||+|.+.+. .++++ |+.||+|..+|+++++.+||||++++
T Consensus 9 ~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~ 88 (238)
T 1y97_A 9 AETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPERPFTAKASEITGLSSEGLA 88 (238)
T ss_dssp CSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSSCCCHHHHHHHCCCHHHHH
T ss_pred cCeEEEEEeeCCCcCCCCCcEEEEEEEEecccccccccccccccccccccceeeEEEECCCCcCCHHHHHHhCCCHHHHh
Confidence 4679999999999983 58999999988753 12444 99999999999999999999999999
Q ss_pred -cCCCCH-HHHHHHHHHHhcC----CeEEEEch-hhHHHHhc-------ccCC-CCceeehhhhchhhh---------CC
Q 023843 140 -RKAKDF-PTVQKKVAELIEG----RILVGHAL-HNDLKALL-------LTHS-KKDLRDTSEYQPFLN---------RN 195 (276)
Q Consensus 140 -~~a~~~-~ev~~~l~~~l~~----~~lVgHn~-~~D~~~L~-------~~~~-~~~~~Dt~~~~~~~~---------~~ 195 (276)
.++++| .+++..|.+|+.+ .++||||+ .||+.||. +..+ ...++||+.+++.+. +.
T Consensus 89 ~~~~p~f~~~v~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~~~~~~p~~~~p~ 168 (238)
T 1y97_A 89 RCRKAGFDGAVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARG 168 (238)
T ss_dssp HTTCCCSCHHHHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC--------
T ss_pred hcCCCccHHHHHHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHHHhccCccccCCC
Confidence 577999 5999999999985 89999999 99999997 2333 245899998887776 45
Q ss_pred CCCccHHHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHhHHHHHH
Q 023843 196 GRSKALRHLAAEILAVEIQNGEHCPIDDARAAMLLYMKNRKQWEK 240 (276)
Q Consensus 196 ~~~~sL~~La~~~lgi~~~~~~H~Al~DA~at~~L~~~l~~~~e~ 240 (276)
..+++|..|+.++||++.. .+|+|++||++|++||.++..++.+
T Consensus 169 ~~~~~L~~l~~~~~gi~~~-~~H~Al~Da~~ta~l~~~l~~~~~~ 212 (238)
T 1y97_A 169 RQGYSLGSLFHRYFRAEPS-AAHSAEGDVHTLLLIFLHRAAELLA 212 (238)
T ss_dssp --CCSHHHHHHHHHSSCCC----CHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCCCCHHHHHHHHhCCCCc-cCccHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999557999886 7899999999999999999766543
No 7
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=99.94 E-value=9.6e-27 Score=210.69 Aligned_cols=158 Identities=18% Similarity=0.236 Sum_probs=134.2
Q ss_pred CCcEEEEEEeccCCC------CCCeeEEEEEEEEeCCCcEE--EEEeecCCc--ccccccccccCCCHHHhcCCCCHHHH
Q 023843 79 LTDVVAMDCEMVGIS------QGNKSALGRVSLVNKWGNLI--YDEFVRPLE--RVVDFRTRISGIRPRDLRKAKDFPTV 148 (276)
Q Consensus 79 ~~~~VaiD~EttG~~------~~~iiei~~v~v~~~~g~ii--~~~~v~P~~--~i~~~~~~i~GIt~~~l~~a~~~~ev 148 (276)
...||+|||||||++ .++|+|||+|.+....|+++ |+.||+|.. +|+++++.+||||++++.++++|.+|
T Consensus 77 ~~~~vviD~ETTGl~~~~~~~~~~IIeIgaV~v~~~~g~i~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~v~~ap~~~ev 156 (299)
T 1zbh_A 77 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQV 156 (299)
T ss_dssp CSEEEEECCEECCCTTCCTTCCCCEEEEEEEEEETTTCCEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHHH
T ss_pred CceEEEEEeecccCCCCCCCCCCceEEEEEEEEECCCCeEeeeeeeeecCCCCCCCCHHHHHHhCCCHHHHhcCCCHHHH
Confidence 568999999999995 35899999998876567887 999999998 89999999999999999999999999
Q ss_pred HHHHHHHhcC-------CeEEEEchhhHHH-Hhc-------ccCCC--CceeehhhhchhhhCCC-CCccHHHHHHHHhC
Q 023843 149 QKKVAELIEG-------RILVGHALHNDLK-ALL-------LTHSK--KDLRDTSEYQPFLNRNG-RSKALRHLAAEILA 210 (276)
Q Consensus 149 ~~~l~~~l~~-------~~lVgHn~~~D~~-~L~-------~~~~~--~~~~Dt~~~~~~~~~~~-~~~sL~~La~~~lg 210 (276)
+.+|.+|+++ .++||||+.||+. ||. +..+. ..++|+..++..+.+.. ..++|.+|+ ++||
T Consensus 157 l~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~-~~~g 235 (299)
T 1zbh_A 157 LKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLG 235 (299)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHH-HHTT
T ss_pred HHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCCCCccHHHHH-HHcC
Confidence 9999999986 4999999999999 996 33332 25889987665554221 248999998 7899
Q ss_pred CcCCCCCCChHHHHHHHHHHHHHhHHH
Q 023843 211 VEIQNGEHCPIDDARAAMLLYMKNRKQ 237 (276)
Q Consensus 211 i~~~~~~H~Al~DA~at~~L~~~l~~~ 237 (276)
++..+.+|+|++||++|++||.++..+
T Consensus 236 i~~~g~~H~Al~DA~ata~l~~~l~~~ 262 (299)
T 1zbh_A 236 MDYDGRPNCGLDDSKNIARIAVRMLQD 262 (299)
T ss_dssp CCCCSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHh
Confidence 998866899999999999999988654
No 8
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=99.94 E-value=4.3e-27 Score=204.50 Aligned_cols=157 Identities=17% Similarity=0.177 Sum_probs=131.2
Q ss_pred CCcEEEEEEeccCCCCC----CeeEEEEEEEEeCCCcEE--EEEeecCCc--ccccccccccCCCHHHhcCCCCHHHHHH
Q 023843 79 LTDVVAMDCEMVGISQG----NKSALGRVSLVNKWGNLI--YDEFVRPLE--RVVDFRTRISGIRPRDLRKAKDFPTVQK 150 (276)
Q Consensus 79 ~~~~VaiD~EttG~~~~----~iiei~~v~v~~~~g~ii--~~~~v~P~~--~i~~~~~~i~GIt~~~l~~a~~~~ev~~ 150 (276)
..++|+||+||||+++. +|+|||+|.+.+..|+++ |+.||+|.. +|+++++.+||||++++.++++|.+|+.
T Consensus 30 ~~~~vviD~ETTGl~~~~d~~~IieIgav~v~~~~~~i~~~f~~lV~P~~~~~i~~~~~~ltGIt~~~v~~a~~~~~v~~ 109 (224)
T 2xri_A 30 YHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLE 109 (224)
T ss_dssp CSEEEEECCEECCCC-CCSSCCEEEEEEEEEETTTCCEEEEEEEECCCSSSCSCCHHHHHHHCCCHHHHTTCCCHHHHHH
T ss_pred CCeEEEEEEEcCCCCCCCCCcceEEEEEEEEecCCcEEeeeeeeEECCCCCCcCCHHHHHHhCcCHHHHcCCCCHHHHHH
Confidence 36799999999999853 899999999876556776 999999997 8999999999999999999999999999
Q ss_pred HHHHHhcCCeEEEEch--------hhHHHH-hc-------ccCCC--CceeehhhhchhhhCCCCCccHHHHHHHHhCCc
Q 023843 151 KVAELIEGRILVGHAL--------HNDLKA-LL-------LTHSK--KDLRDTSEYQPFLNRNGRSKALRHLAAEILAVE 212 (276)
Q Consensus 151 ~l~~~l~~~~lVgHn~--------~~D~~~-L~-------~~~~~--~~~~Dt~~~~~~~~~~~~~~sL~~La~~~lgi~ 212 (276)
+|.+|+++.++||||+ .||+.+ |. +..+. ..++|+.............++|..|+ ++||++
T Consensus 110 ~f~~~l~~~~lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~~p~~~L~~l~-~~~gi~ 188 (224)
T 2xri_A 110 RVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMN-KGLSLQ 188 (224)
T ss_dssp HHHHHHHHTTTTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTSCCTTTHHHHH-HHTTCC
T ss_pred HHHHHHhhcccccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHhccCCCCCHHHHH-HHcCCC
Confidence 9999999999999999 999996 63 33332 25789654433333233458999998 799999
Q ss_pred CCCCCCChHHHHHHHHHHHHHhHH
Q 023843 213 IQNGEHCPIDDARAAMLLYMKNRK 236 (276)
Q Consensus 213 ~~~~~H~Al~DA~at~~L~~~l~~ 236 (276)
..+.+|+|++||++|++||.++..
T Consensus 189 ~~~~~H~Al~DA~~ta~l~~~l~~ 212 (224)
T 2xri_A 189 HIGRPHSGIDDCKNIANIMKTLAY 212 (224)
T ss_dssp CCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcChHHHHHHHHHHHHHHHH
Confidence 876789999999999999998864
No 9
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=99.94 E-value=1e-26 Score=210.85 Aligned_cols=167 Identities=12% Similarity=0.135 Sum_probs=136.3
Q ss_pred CCCcEEEEEEeccCCC--CCCeeEEEEEEEEeCC--------C---------cE--EEEEeecCCcccccccccccCCCH
Q 023843 78 SLTDVVAMDCEMVGIS--QGNKSALGRVSLVNKW--------G---------NL--IYDEFVRPLERVVDFRTRISGIRP 136 (276)
Q Consensus 78 ~~~~~VaiD~EttG~~--~~~iiei~~v~v~~~~--------g---------~i--i~~~~v~P~~~i~~~~~~i~GIt~ 136 (276)
+...||+||+||||++ .++|+|||+|.+.+.. | ++ .|+.+|+|..+|++.++.+||||+
T Consensus 10 ~~~tfVv~DlETTGL~~~~d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI~P~~~I~~~a~~IhGIT~ 89 (314)
T 3u3y_B 10 HMQTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSK 89 (314)
T ss_dssp CCSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEECBCSSCCCHHHHHHHSCCH
T ss_pred ccCCEEEEEEECCCCCCCCCeEEEEEEEEEECCccccccccccccccccccceeeeeEEEEECCCCCCCHHHHHhcCCCH
Confidence 3677999999999998 5699999999987531 0 22 489999999999999999999999
Q ss_pred HHhcCC--CCH-HHHHHHHHHHhcC----CeEEEEc-hhhHHHHhc-------ccCC--CCceeehhhhch----hhhCC
Q 023843 137 RDLRKA--KDF-PTVQKKVAELIEG----RILVGHA-LHNDLKALL-------LTHS--KKDLRDTSEYQP----FLNRN 195 (276)
Q Consensus 137 ~~l~~a--~~~-~ev~~~l~~~l~~----~~lVgHn-~~~D~~~L~-------~~~~--~~~~~Dt~~~~~----~~~~~ 195 (276)
+++.++ ++| .+++.+|.+|+++ .++|||| +.||+.||. +..+ ...++||+.+.+ ...+.
T Consensus 90 e~l~~aG~P~f~~ev~~~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~r~~~P~ 169 (314)
T 3u3y_B 90 AELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPS 169 (314)
T ss_dssp HHHHHTTCCBSCHHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTTC---
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHHHHHHHhCcc
Confidence 999998 899 7999999999998 8999999 899999997 2221 234789887544 22222
Q ss_pred ----CCCccHHHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHH
Q 023843 196 ----GRSKALRHLAAEILAVEIQNGEHCPIDDARAAMLLYMKNRKQWEKSVKDQ 245 (276)
Q Consensus 196 ----~~~~sL~~La~~~lgi~~~~~~H~Al~DA~at~~L~~~l~~~~e~~~~~~ 245 (276)
..+++|.+|+..+||++.. .+|+|++||++|++||+++..++...+++.
T Consensus 170 ~~~~~~~~~L~~L~~~l~gi~~~-~aHrAl~DA~ata~lf~~l~~~~l~~~~~~ 222 (314)
T 3u3y_B 170 GNGSRKSYSLGSIYTRLYWQAPT-DSHTAEGHVLTLLSICQWKPQALLQWVDEH 222 (314)
T ss_dssp ----CCCCSHHHHHHHHHSSCCS-CSSSHHHHHHHHHHHHHSSHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHhcCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3789999999555999987 799999999999999999988766655543
No 10
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=99.93 E-value=6.3e-26 Score=196.89 Aligned_cols=159 Identities=19% Similarity=0.186 Sum_probs=132.5
Q ss_pred CCCcEEEEEEeccCCCC--CCeeEEEEEEEEe-CCCcE----EEEEeecC--CcccccccccccCCCHHH-hcCCCCHHH
Q 023843 78 SLTDVVAMDCEMVGISQ--GNKSALGRVSLVN-KWGNL----IYDEFVRP--LERVVDFRTRISGIRPRD-LRKAKDFPT 147 (276)
Q Consensus 78 ~~~~~VaiD~EttG~~~--~~iiei~~v~v~~-~~g~i----i~~~~v~P--~~~i~~~~~~i~GIt~~~-l~~a~~~~e 147 (276)
....+|+|||||||+++ ++|+|||+|.+.. .+|++ .|+.||+| ..+|+++++.+||||+++ +.+++++.+
T Consensus 27 ~~~~~vviD~ETTGl~~~~~~IieIg~v~~~~~~~g~i~~~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~~v~~~~~~~~ 106 (224)
T 2f96_A 27 RGYLPVVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQEEA 106 (224)
T ss_dssp TTEEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCBCHHH
T ss_pred cCCcEEEEEeeCCCCCCCCCeeEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCHHH
Confidence 34579999999999985 4899999998872 24764 28999999 569999999999999975 889999999
Q ss_pred HHHHHHHHhc---------CCeEEEEchhhHHHHhc-------ccC-C--CCceeehhhhchhhhCCCCCccHHHHHHHH
Q 023843 148 VQKKVAELIE---------GRILVGHALHNDLKALL-------LTH-S--KKDLRDTSEYQPFLNRNGRSKALRHLAAEI 208 (276)
Q Consensus 148 v~~~l~~~l~---------~~~lVgHn~~~D~~~L~-------~~~-~--~~~~~Dt~~~~~~~~~~~~~~sL~~La~~~ 208 (276)
++.+|.+|+. +.++||||+.||+.||. +.. + ...++||+.+++.+.+ .++|..|+ ++
T Consensus 107 v~~~~~~~l~~~~~~~~~~~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~~---~~~L~~l~-~~ 182 (224)
T 2f96_A 107 ALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYG---QTVLAKAC-QA 182 (224)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHS---CCSHHHHH-HH
T ss_pred HHHHHHHHHHHHhhhcccCCCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHcC---CCCHHHHH-HH
Confidence 9999999884 78999999999999996 221 1 2358999998887764 46999998 78
Q ss_pred hCCcCCC-CCCChHHHHHHHHHHHHHhHHHHHH
Q 023843 209 LAVEIQN-GEHCPIDDARAAMLLYMKNRKQWEK 240 (276)
Q Consensus 209 lgi~~~~-~~H~Al~DA~at~~L~~~l~~~~e~ 240 (276)
||++..+ .+|+|++||++|++||.++..++.+
T Consensus 183 ~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~~~ 215 (224)
T 2f96_A 183 AGMEFDNREAHSARYDTEKTAELFCGIVNRWKE 215 (224)
T ss_dssp TTCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 9998753 5899999999999999999887653
No 11
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=99.93 E-value=2.9e-26 Score=211.48 Aligned_cols=160 Identities=19% Similarity=0.234 Sum_probs=134.9
Q ss_pred CCCCcEEEEEEeccCCC------CCCeeEEEEEEEEeCCCcEE--EEEeecCCc--ccccccccccCCCHHHhcCCCCHH
Q 023843 77 FSLTDVVAMDCEMVGIS------QGNKSALGRVSLVNKWGNLI--YDEFVRPLE--RVVDFRTRISGIRPRDLRKAKDFP 146 (276)
Q Consensus 77 ~~~~~~VaiD~EttG~~------~~~iiei~~v~v~~~~g~ii--~~~~v~P~~--~i~~~~~~i~GIt~~~l~~a~~~~ 146 (276)
.....||+|||||||++ .++|+|||+|.+....|+++ |+.||+|.. +|+++++.+||||+++|.++++|.
T Consensus 125 ~~~~~~vviD~ETTGl~~~~~~~~deIIEIgaV~vd~~~g~i~~~f~~lVkP~~~~~I~~~~t~ihGIT~e~v~~ap~~~ 204 (349)
T 1zbu_A 125 SYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFP 204 (349)
T ss_dssp CCCSEEEECCCEECCCTTCCTTCCCCEEECCEEEEETTTTEEEEEECCBEECSSSCSCCHHHHHHHCCCHHHHHTSEEHH
T ss_pred ccCCeEEEEEEecCCCCCcCCCCCCeEEEEEEEEEECCCceEeEEEEEEECCCCCCCCCHHHHHHhCCCHHHHhCCCCHH
Confidence 34578999999999994 35899999998876567876 999999998 999999999999999999999999
Q ss_pred HHHHHHHHHhcC-------CeEEEEchhhHHH-Hhc-------ccCCC--CceeehhhhchhhhCC-CCCccHHHHHHHH
Q 023843 147 TVQKKVAELIEG-------RILVGHALHNDLK-ALL-------LTHSK--KDLRDTSEYQPFLNRN-GRSKALRHLAAEI 208 (276)
Q Consensus 147 ev~~~l~~~l~~-------~~lVgHn~~~D~~-~L~-------~~~~~--~~~~Dt~~~~~~~~~~-~~~~sL~~La~~~ 208 (276)
+|+.+|..|+++ .++||||+.||+. ||. +..+. ..++|+..++..+.+. ...++|..|+ ++
T Consensus 205 eVl~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~-~~ 283 (349)
T 1zbu_A 205 QVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EK 283 (349)
T ss_dssp HHHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGGSHHHHH-HH
T ss_pred HHHHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCCCCCCHHHHH-HH
Confidence 999999999975 4999999999999 996 33332 2578998776555422 1248999998 78
Q ss_pred hCCcCCCCCCChHHHHHHHHHHHHHhHHH
Q 023843 209 LAVEIQNGEHCPIDDARAAMLLYMKNRKQ 237 (276)
Q Consensus 209 lgi~~~~~~H~Al~DA~at~~L~~~l~~~ 237 (276)
||++..+.+|+|++||++|++||.++...
T Consensus 284 ~gi~~~g~~HrAl~DA~ata~ll~~ll~~ 312 (349)
T 1zbu_A 284 LGMDYDGRPHCGLDDSKNIARIAVRMLQD 312 (349)
T ss_dssp TTCCCCSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99998866899999999999999988654
No 12
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=99.93 E-value=2.8e-26 Score=208.39 Aligned_cols=158 Identities=11% Similarity=0.155 Sum_probs=132.6
Q ss_pred CCCcEEEEEEeccCCCCC-----CeeEEEEEEEEeCCCcEE----EEEeecCCcc--cccccccccCCCHHHhcCCCCHH
Q 023843 78 SLTDVVAMDCEMVGISQG-----NKSALGRVSLVNKWGNLI----YDEFVRPLER--VVDFRTRISGIRPRDLRKAKDFP 146 (276)
Q Consensus 78 ~~~~~VaiD~EttG~~~~-----~iiei~~v~v~~~~g~ii----~~~~v~P~~~--i~~~~~~i~GIt~~~l~~a~~~~ 146 (276)
...++|+||+||||+++. +|+|||+|.+...+|+++ |+.||+|... |+++++.+||||++++.++++|.
T Consensus 17 ~~~~~vviD~ETTGl~~~~d~~~eIIEIgaV~vd~~~g~i~~~~~f~~lV~P~~~p~i~~~~~~ltGIt~e~v~~ap~~~ 96 (308)
T 3cg7_A 17 PFDTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDFTGIPQRSIDTADTFD 96 (308)
T ss_dssp CCSEEEEEEEEECCBTTBCSCCCCEEEEEEEEEETTTTEEEEEEEEEEECBCSSBCSCCHHHHHHHCCCHHHHHTSCBHH
T ss_pred CCCeEEEEEeecCCCCCCCCCCCCeEEEEEEEEEcCCCEEeeccceeeEECCCCCCCCCHHHHHHcCCCHHHHhcCCCHH
Confidence 456899999999999853 899999888853457764 8999999984 99999999999999999999999
Q ss_pred HHHHHHHHHhcCCeEEEEch------hhHH-HHhc-------ccCCC--CceeehhhhchhhhCCC------CCccHHHH
Q 023843 147 TVQKKVAELIEGRILVGHAL------HNDL-KALL-------LTHSK--KDLRDTSEYQPFLNRNG------RSKALRHL 204 (276)
Q Consensus 147 ev~~~l~~~l~~~~lVgHn~------~~D~-~~L~-------~~~~~--~~~~Dt~~~~~~~~~~~------~~~sL~~L 204 (276)
+|+.+|.+|+++.++||||+ .||+ .||. +..+. ..++||..+++.+.+.. .+++|.+|
T Consensus 97 evl~~f~~~l~~~~lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~~~~~~L~~l 176 (308)
T 3cg7_A 97 VVYEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGKM 176 (308)
T ss_dssp HHHHHHHHHHHHHCCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCCCCCSHHHHH
T ss_pred HHHHHHHHHHHhCCcCCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhccccccccccCcCHHHH
Confidence 99999999999888888888 9999 6885 33332 24799998776655422 26899999
Q ss_pred HHHHhCCcCCCCCCChHHHHHHHHHHHHHhHH
Q 023843 205 AAEILAVEIQNGEHCPIDDARAAMLLYMKNRK 236 (276)
Q Consensus 205 a~~~lgi~~~~~~H~Al~DA~at~~L~~~l~~ 236 (276)
+ ++||++..+.+|+|++||++|++||.++..
T Consensus 177 ~-~~~gi~~~~~~HrAl~DA~ata~l~~~l~~ 207 (308)
T 3cg7_A 177 N-EYYDLPTIGRAHDAMDDCLNIATILQRMIN 207 (308)
T ss_dssp H-HHTTCCCCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred H-HHcCCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 8 899999986679999999999999998864
No 13
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=99.93 E-value=2.6e-25 Score=194.26 Aligned_cols=159 Identities=16% Similarity=0.224 Sum_probs=134.0
Q ss_pred CCCcEEEEEEeccCCCC--CCeeEEEEEEEE-eCCCcE----EEEEeecC--CcccccccccccCCCHH-HhcCCCCHHH
Q 023843 78 SLTDVVAMDCEMVGISQ--GNKSALGRVSLV-NKWGNL----IYDEFVRP--LERVVDFRTRISGIRPR-DLRKAKDFPT 147 (276)
Q Consensus 78 ~~~~~VaiD~EttG~~~--~~iiei~~v~v~-~~~g~i----i~~~~v~P--~~~i~~~~~~i~GIt~~-~l~~a~~~~e 147 (276)
....+|+||+||||+++ ++|++||+|.+. +.+|++ .|..||+| ...++++++.+||||++ ++.+++++.+
T Consensus 35 ~~~~~vviD~ETTGl~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~GIt~e~~v~~~~~~~~ 114 (235)
T 3v9w_A 35 RGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSGYE 114 (235)
T ss_dssp TTEEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHCCCTTCGGGCCBCHHH
T ss_pred cCCcEEEEEEeCCCCCCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCHHH
Confidence 34579999999999984 489999999886 224764 28899999 45899999999999999 8999999999
Q ss_pred HHHHHHHHh---------cCCeEEEEchhhHHHHhc-------ccC-C--CCceeehhhhchhhhCCCCCccHHHHHHHH
Q 023843 148 VQKKVAELI---------EGRILVGHALHNDLKALL-------LTH-S--KKDLRDTSEYQPFLNRNGRSKALRHLAAEI 208 (276)
Q Consensus 148 v~~~l~~~l---------~~~~lVgHn~~~D~~~L~-------~~~-~--~~~~~Dt~~~~~~~~~~~~~~sL~~La~~~ 208 (276)
++.+|..|+ ++.++||||+.||+.||. +.. + ...++||+.+++.+.+ .++|..|+ ++
T Consensus 115 vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~p---~~~L~~l~-~~ 190 (235)
T 3v9w_A 115 ALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALG---QTVLSKAC-QT 190 (235)
T ss_dssp HHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHHS---CCSHHHHH-HH
T ss_pred HHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHhC---CCCHHHHH-HH
Confidence 999999999 478999999999999996 221 1 1347899999998875 36999999 78
Q ss_pred hCCcCCC-CCCChHHHHHHHHHHHHHhHHHHHH
Q 023843 209 LAVEIQN-GEHCPIDDARAAMLLYMKNRKQWEK 240 (276)
Q Consensus 209 lgi~~~~-~~H~Al~DA~at~~L~~~l~~~~e~ 240 (276)
||++... .+|+|++||++|++||.++..++++
T Consensus 191 ~gi~~~~~~~H~Al~DA~~ta~l~~~l~~~l~~ 223 (235)
T 3v9w_A 191 AGMDFDSTQAHSALYDTERTAVLFCEIVNRWKR 223 (235)
T ss_dssp HTCCCCTTTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCcChHHHHHHHHHHHHHHHHHHHh
Confidence 9999864 5899999999999999999887654
No 14
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=99.92 E-value=4e-25 Score=185.37 Aligned_cols=147 Identities=15% Similarity=0.188 Sum_probs=114.1
Q ss_pred CCcEEEEEEeccCCCC--CCeeEEEEEEEEeCCCcEE---EEEeecCCccccc----cc---ccccCCCHHHhcCCCCHH
Q 023843 79 LTDVVAMDCEMVGISQ--GNKSALGRVSLVNKWGNLI---YDEFVRPLERVVD----FR---TRISGIRPRDLRKAKDFP 146 (276)
Q Consensus 79 ~~~~VaiD~EttG~~~--~~iiei~~v~v~~~~g~ii---~~~~v~P~~~i~~----~~---~~i~GIt~~~l~~a~~~~ 146 (276)
..++|+|||||||+++ ++|+|||+| +++.+|+++ |+.||+|..++++ ++ +.+||||++++.++++|.
T Consensus 4 ~~~~v~iD~ETTGl~~~~~~IieIg~v-~~~~~~~~~~~~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l~~~~~~~ 82 (180)
T 2igi_A 4 ENNLIWIDLEMTGLDPERDRIIEIATL-VTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDR 82 (180)
T ss_dssp GGCEEEEEEEESSSCTTTCCEEEEEEE-EECTTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCCCHH
T ss_pred CCcEEEEEeeCCCCCCCCCceEEEEEE-EEcCCCcEecCCcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHHhcCCCHH
Confidence 3579999999999985 489999988 446667665 8999999987654 44 556999999999999999
Q ss_pred HHHHHHHHHhcC------CeEEEEchhhHHHHhcccCC------CCceee--hhh-hchhhhCCCCCccHHHHHHHHhCC
Q 023843 147 TVQKKVAELIEG------RILVGHALHNDLKALLLTHS------KKDLRD--TSE-YQPFLNRNGRSKALRHLAAEILAV 211 (276)
Q Consensus 147 ev~~~l~~~l~~------~~lVgHn~~~D~~~L~~~~~------~~~~~D--t~~-~~~~~~~~~~~~sL~~La~~~lgi 211 (276)
+|+.+|.+|+++ .++||||+.||+.||...++ .+.++| |.. +++.+.+. + + .|+
T Consensus 83 ~v~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~~~~~~~~~~~~d~~tl~~l~~~~~p~-----~---~---~~i 151 (180)
T 2igi_A 83 EAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPE-----I---L---DGF 151 (180)
T ss_dssp HHHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEETHHHHHHHHHHCGG-----G---G---GGS
T ss_pred HHHHHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHHHhccCCCcceeeHHHHHHHHHHhChH-----h---h---hCC
Confidence 999999999985 69999999999999983321 234677 442 44333321 1 1 256
Q ss_pred cCCCCCCChHHHHHHHHHHHHHhHHHH
Q 023843 212 EIQNGEHCPIDDARAAMLLYMKNRKQW 238 (276)
Q Consensus 212 ~~~~~~H~Al~DA~at~~L~~~l~~~~ 238 (276)
+.. .+|+|++||++|++||+++...+
T Consensus 152 ~~~-~~H~Al~Da~ata~l~~~~~~~~ 177 (180)
T 2igi_A 152 TKQ-GTHQAMDDIRESVAELAYYREHF 177 (180)
T ss_dssp CCC-CCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCc-CCcCcHHHHHHHHHHHHHHHHHh
Confidence 444 68999999999999999987653
No 15
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=99.91 E-value=1.5e-24 Score=184.46 Aligned_cols=147 Identities=15% Similarity=0.196 Sum_probs=114.8
Q ss_pred CCcEEEEEEeccCCCC--CCeeEEEEEEEEeCCCcEE---EEEeecCCccc----ccccccc---cCCCHHHhcCCCCHH
Q 023843 79 LTDVVAMDCEMVGISQ--GNKSALGRVSLVNKWGNLI---YDEFVRPLERV----VDFRTRI---SGIRPRDLRKAKDFP 146 (276)
Q Consensus 79 ~~~~VaiD~EttG~~~--~~iiei~~v~v~~~~g~ii---~~~~v~P~~~i----~~~~~~i---~GIt~~~l~~a~~~~ 146 (276)
..+||+|||||||+++ ++|+|||+|. .+..++++ |+.+|+|+.++ ++++..+ ||||++++.++++|.
T Consensus 8 ~~~~vviD~ETTGl~p~~d~IieIgav~-~~~~~~~~~~~~~~~v~p~~~i~~~~~~~~~~~~~itGIt~~~l~~~p~~~ 86 (194)
T 2gbz_A 8 NDRLIWIDLEMTGLDTDRDSIIEIATIV-TDAQLNVLAEGPELAIAHSLETLEAMDEWNRNQHRRSGLWQRVLDSQVTHA 86 (194)
T ss_dssp CCEEEEEEEEESCSCTTTCCEEEEEEEE-EETTCCEEEECCCEECCCCHHHHHTSCSHHHHHHHHHTHHHHHHHCCCCHH
T ss_pred CCCEEEEEeECCCCCCCCCccEEEEEEE-EcCCcceeccCceEEEeCCHHHhhccchHHHHHHHhhCCCHHHHhcCCCHH
Confidence 3579999999999985 4899999888 56544344 77899999876 5556555 999999999999999
Q ss_pred HHHHHHHHHhcCCe------EEEEchhhHHHHhcccCCC------CceeehhhhchhhhCCCCCccHHHHHHHHh-----
Q 023843 147 TVQKKVAELIEGRI------LVGHALHNDLKALLLTHSK------KDLRDTSEYQPFLNRNGRSKALRHLAAEIL----- 209 (276)
Q Consensus 147 ev~~~l~~~l~~~~------lVgHn~~~D~~~L~~~~~~------~~~~Dt~~~~~~~~~~~~~~sL~~La~~~l----- 209 (276)
+|+.+|.+|+++.+ |||||+.||+.||...+++ ++.+|+. +|..|+++++
T Consensus 87 ev~~~~~~~l~~~~~~~~~~lvghn~~FD~~fL~~~~~~~~~~~~~~~~d~~-------------~l~~l~~~~~p~~~~ 153 (194)
T 2gbz_A 87 QAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMSRLERYFHYRNLDVS-------------TIKELARRWAPAVAS 153 (194)
T ss_dssp HHHHHHHHHHTTTCCTTSSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEEHH-------------HHHHHHHHHCGGGGT
T ss_pred HHHHHHHHHHHHhCCCCCceEEecCHHHhHHHHHHHHHHhcccCCCccccHH-------------HHHHHHHHhCHHHHh
Confidence 99999999999887 9999999999999843322 2345554 3334443332
Q ss_pred CCcCCCCCCChHHHHHHHHHHHHHhHHHHHH
Q 023843 210 AVEIQNGEHCPIDDARAAMLLYMKNRKQWEK 240 (276)
Q Consensus 210 gi~~~~~~H~Al~DA~at~~L~~~l~~~~e~ 240 (276)
+++.. .+|+|++||++|++||+.+...+..
T Consensus 154 ~i~~~-~~H~Al~Da~ata~ll~~~~~~~~~ 183 (194)
T 2gbz_A 154 GFAKS-SAHTALSDVRDSIDELRHYRQFMGT 183 (194)
T ss_dssp TCCCC-SCCSHHHHHHHHHHHHHHHHTTSHH
T ss_pred CCCCC-CCcccHHHHHHHHHHHHHHHHHhcc
Confidence 25443 6899999999999999999887653
No 16
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=99.91 E-value=1.4e-24 Score=183.49 Aligned_cols=147 Identities=14% Similarity=0.132 Sum_probs=114.6
Q ss_pred CCcEEEEEEeccCCCC--CCeeEEEEEEEEeCCCcEE---EEEeecCCcc----cccccc---cccCCCHHHhcCCCCHH
Q 023843 79 LTDVVAMDCEMVGISQ--GNKSALGRVSLVNKWGNLI---YDEFVRPLER----VVDFRT---RISGIRPRDLRKAKDFP 146 (276)
Q Consensus 79 ~~~~VaiD~EttG~~~--~~iiei~~v~v~~~~g~ii---~~~~v~P~~~----i~~~~~---~i~GIt~~~l~~a~~~~ 146 (276)
..++|+|||||||+++ ++|+|||+| +.+..++++ +..+|+|+.. +++++. .+||||.+++.+++++.
T Consensus 8 ~~~~v~~D~ETTGL~p~~d~IiEIgaV-~~d~~~~i~~~~~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l~~~p~~~ 86 (186)
T 3tr8_A 8 DDNLIWLDLEMTGLDPERDRIIEIATI-VTNSHLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKNSSVDEV 86 (186)
T ss_dssp TTCEEEEEEEESSSCTTTCCEEEEEEE-EECTTCCEEEECCCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHHTCCCCHH
T ss_pred CCcEEEEEEECCCCCCCCCceEEEEEE-EEcCCeEEeeeeEEEEEeCCccccccCCcccHHHHhccCCCHHHHhcCCCHH
Confidence 4679999999999994 489999999 777666665 4556865542 345544 45699999999999999
Q ss_pred HHHHHHHHHh------cCCeEEEEchhhHHHHhcccC------CCCceee--hhh-hchhhhCCCCCccHHHHHHHHhCC
Q 023843 147 TVQKKVAELI------EGRILVGHALHNDLKALLLTH------SKKDLRD--TSE-YQPFLNRNGRSKALRHLAAEILAV 211 (276)
Q Consensus 147 ev~~~l~~~l------~~~~lVgHn~~~D~~~L~~~~------~~~~~~D--t~~-~~~~~~~~~~~~sL~~La~~~lgi 211 (276)
+|+.+|.+|+ ++.+|||||+.||+.||.... ..++++| |.. +++.+.|.. . -|+
T Consensus 87 ev~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~~~~~~~~~~~~iDvsTl~elar~~~P~~-----~------~~~ 155 (186)
T 3tr8_A 87 EAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMPRLNQFFHYRHLDVTTLKILAQRWAPQI-----A------AAH 155 (186)
T ss_dssp HHHHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHCHHHHHHSCSCEEEHHHHHHHHHHHCHHH-----H------TTS
T ss_pred HHHHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHHHHcCCCCCCcEEeHHHHHHHHHHHCccc-----c------ccC
Confidence 9999999999 889999999999999997222 2345889 665 666665431 1 156
Q ss_pred cCCCCCCChHHHHHHHHHHHHHhHHHH
Q 023843 212 EIQNGEHCPIDDARAAMLLYMKNRKQW 238 (276)
Q Consensus 212 ~~~~~~H~Al~DA~at~~L~~~l~~~~ 238 (276)
+.. +.|+|++||++|+.+++.|...+
T Consensus 156 ~~~-~~HrAl~Da~ati~~l~~y~~~~ 181 (186)
T 3tr8_A 156 IKE-SQHLALQDIRDSIEELRYYRAHL 181 (186)
T ss_dssp CCC-CCSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCC-CCcChHHHHHHHHHHHHHHHHHh
Confidence 655 78999999999999999997653
No 17
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=99.91 E-value=3.7e-24 Score=204.63 Aligned_cols=167 Identities=14% Similarity=0.103 Sum_probs=132.0
Q ss_pred CcEEEEEEeccCCCC--CCeeEEEEEEEEeCCCcEE---EEEeecCCccc--ccccccccCCCHHHhcCCC-CHHHHHHH
Q 023843 80 TDVVAMDCEMVGISQ--GNKSALGRVSLVNKWGNLI---YDEFVRPLERV--VDFRTRISGIRPRDLRKAK-DFPTVQKK 151 (276)
Q Consensus 80 ~~~VaiD~EttG~~~--~~iiei~~v~v~~~~g~ii---~~~~v~P~~~i--~~~~~~i~GIt~~~l~~a~-~~~ev~~~ 151 (276)
..||+||+||||+++ ++|+|||+|.+. .+|+++ |+.||+|...+ .+.++.+||||++++.+++ .+.+|+.+
T Consensus 9 ~~~vv~DlETTGl~p~~d~IIEIgaV~vd-~~g~ii~~~f~~lVkP~~~ilp~p~a~~IhGIT~e~l~~ap~~~~evl~~ 87 (482)
T 2qxf_A 9 STFLFHDYETFGTHPALDRPAQFAAIRTD-SEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAAR 87 (482)
T ss_dssp CEEEEEEEEESSSCTTTSCEEEEEEEEEC-TTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHHHH
T ss_pred CCEEEEEEECCCCCCCCCeEEEEEEEEEE-CCCeEEeeeeEEEECCCCCCCCCHHHHHHhCCCHHHHhcCCCCHHHHHHH
Confidence 479999999999984 489999988774 457776 99999999987 5678899999999998765 45999999
Q ss_pred HHHHhc--CCeEEEEc-hhhHHHHhc-----ccCC--C------CceeehhhhchhhhC-------------CCCCccHH
Q 023843 152 VAELIE--GRILVGHA-LHNDLKALL-----LTHS--K------KDLRDTSEYQPFLNR-------------NGRSKALR 202 (276)
Q Consensus 152 l~~~l~--~~~lVgHn-~~~D~~~L~-----~~~~--~------~~~~Dt~~~~~~~~~-------------~~~~~sL~ 202 (276)
|.+|++ +.++|||| +.||+.||. ...+ . ...+||..+++.+.+ +..+++|.
T Consensus 88 f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~kL~ 167 (482)
T 2qxf_A 88 IHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLE 167 (482)
T ss_dssp HHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCHH
T ss_pred HHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCCCHH
Confidence 999998 99999999 899999996 1111 1 336788877665542 34578999
Q ss_pred HHHHHHhCCcCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 023843 203 HLAAEILAVEIQNGEHCPIDDARAAMLLYMKNRKQWEKSVKDQTRLE 249 (276)
Q Consensus 203 ~La~~~lgi~~~~~~H~Al~DA~at~~L~~~l~~~~e~~~~~~~~~~ 249 (276)
.|+ +++|++.. .+|+|++||++|+.||..+...........+...
T Consensus 168 ~L~-~~~Gi~~~-~aHrAL~DA~aTa~l~~~l~~~~p~l~~~~l~~~ 212 (482)
T 2qxf_A 168 HLT-KANGIEHS-NAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHR 212 (482)
T ss_dssp HHH-HHTTCCCC----CTTHHHHHHHHHHHHHHHHSHHHHHHHHHTT
T ss_pred HHH-HHcCCCCC-CCCCHHHHHHHHHHHHHHHHHhChhhhHHHHHhh
Confidence 998 78999886 7899999999999999999877555555544443
No 18
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=99.15 E-value=4e-10 Score=110.72 Aligned_cols=142 Identities=20% Similarity=0.201 Sum_probs=102.1
Q ss_pred CcEEEEEEeccCCCC--CCeeEEEEEEEEeCCCcEEEEEeecCCcccccccccccCCCHHHhcCCCCHHHHHHHHHHHhc
Q 023843 80 TDVVAMDCEMVGISQ--GNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIE 157 (276)
Q Consensus 80 ~~~VaiD~EttG~~~--~~iiei~~v~v~~~~g~ii~~~~v~P~~~i~~~~~~i~GIt~~~l~~a~~~~ev~~~l~~~l~ 157 (276)
..+|+||+||||+++ ++++.|+.+ + ..|+.+| | |... .+++ +.+++++.+++..|.+|+.
T Consensus 26 ~~~va~DtEttgl~~~~~~iv~I~~~-~--~~g~~~y---i-p~~~--------~~~~---~~~~l~~~~vl~~L~~~L~ 87 (605)
T 2kfn_A 26 APVFAFDTETDSLDNISANLVGLSFA-I--EPGVAAY---I-PVAH--------DYLD---APDQISRERALELLKPLLE 87 (605)
T ss_dssp SSSEEEEEEESCSCTTTCCEEEEEEE-E--ETTEEEE---E-ECCC--------CSTT---CCCCCCHHHHHHHHHHHHT
T ss_pred CCeEEEEEecCCCCcccCceEEEEEE-E--cCCcEEE---E-eccc--------cccc---cccccCHHHHHHHHHHHHc
Confidence 368999999999974 466665533 3 2365544 3 2111 0111 1234568899999999998
Q ss_pred CC--eEEEEchhhHHHHhc---ccCCCCceeehhhhchhhhCCCCCccHHHHHHHHhCCcCC--------C------CC-
Q 023843 158 GR--ILVGHALHNDLKALL---LTHSKKDLRDTSEYQPFLNRNGRSKALRHLAAEILAVEIQ--------N------GE- 217 (276)
Q Consensus 158 ~~--~lVgHn~~~D~~~L~---~~~~~~~~~Dt~~~~~~~~~~~~~~sL~~La~~~lgi~~~--------~------~~- 217 (276)
+. ++||||++||+.+|. +..+. .++||+.+++++.+...+++|+.|+.+++|+... + ..
T Consensus 88 d~~i~kV~hnak~D~~~L~~~Gi~l~~-~~~DT~laayLL~p~~~~~~L~~La~~~Lg~~~i~~~~~~gKg~~~~~~~~~ 166 (605)
T 2kfn_A 88 DEKALKVGQNLKYDRGILANYGIELRG-IAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 166 (605)
T ss_dssp CTTSCEEESSHHHHHHHHHTTTCCCCC-EEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCCCHHHHHCSSTTCCCGGGS
T ss_pred CCCCeEEEECcHHHHHHHHHCCCCCCC-ccccHHHHHHHhCCCCCCCCHHHHHHHhcCCCcccHHHHhCCCcccCCcccC
Confidence 64 889999999999996 33322 3799999999999877899999999888786531 0 01
Q ss_pred ------CChHHHHHHHHHHHHHhHHHHHH
Q 023843 218 ------HCPIDDARAAMLLYMKNRKQWEK 240 (276)
Q Consensus 218 ------H~Al~DA~at~~L~~~l~~~~e~ 240 (276)
|.|..||.+++.||..+..++++
T Consensus 167 ~le~~~~yAa~Da~~~~~L~~~L~~~L~~ 195 (605)
T 2kfn_A 167 ALEEAGRYAAEDADVTLQLHLKMWPDLQK 195 (605)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999998776654
No 19
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=99.03 E-value=1.7e-10 Score=115.09 Aligned_cols=131 Identities=16% Similarity=0.155 Sum_probs=91.5
Q ss_pred EEEEEEeccCCCCCCeeEEEEEEEEeCCCcEEEEEeecCCcccccccccccCCCHHHhcCCCCHHHHHHHHHHHhc-CCe
Q 023843 82 VVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIE-GRI 160 (276)
Q Consensus 82 ~VaiD~EttG~~~~~iiei~~v~v~~~~g~ii~~~~v~P~~~i~~~~~~i~GIt~~~l~~a~~~~ev~~~l~~~l~-~~~ 160 (276)
+|+||+||||+++.. ..|+.|.+.+..+...+ .+.|. .+.+++..|.+|+. +.+
T Consensus 1 ~vv~D~ETtGl~~~~-d~i~~iqi~~~~~~~~~--~~~p~----------------------~i~~~l~~L~~~l~~~~~ 55 (698)
T 1x9m_A 1 MIVSDIEANALLESV-TKFHCGVIYDYSTAEYV--SYRPS----------------------DFGAYLDALEAEVARGGL 55 (698)
T ss_dssp CEEEEEEESSCGGGC-CCEEEEEEEETTTTEEE--EECGG----------------------GHHHHHHHHHHHHHTTCC
T ss_pred CEEEEcCCCCcCCCC-CEEEEEEEEecCCCcEE--EEChH----------------------HHHHHHHHHHHHHhcCCe
Confidence 589999999998432 35667777775432322 12221 12446677777884 788
Q ss_pred EEEEch-hhHHHHhc----------ccCCCCceeehhhhchhhhCCCCCccHHHHHHHHh-------CCcC---------
Q 023843 161 LVGHAL-HNDLKALL----------LTHSKKDLRDTSEYQPFLNRNGRSKALRHLAAEIL-------AVEI--------- 213 (276)
Q Consensus 161 lVgHn~-~~D~~~L~----------~~~~~~~~~Dt~~~~~~~~~~~~~~sL~~La~~~l-------gi~~--------- 213 (276)
+||||+ .||+.+|. +..+...++||+.+++++.+...+++|++|+.++| |...
T Consensus 56 kV~HNa~kfD~~~L~~~~~~~~~~Gi~l~~~~~~DTmlaayLL~p~~~~~~L~~La~~~L~~sL~~~g~~lg~~Ki~~~~ 135 (698)
T 1x9m_A 56 IVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGALEAWGYRLGEMKGEYKD 135 (698)
T ss_dssp EEESSTTTTHHHHHHHHHHHHHCCCCCCCGGGEEEHHHHHHHHTTTSCCCTTTTSCGGGSCSCCCHHHHHHHHHHHHHHH
T ss_pred EEEcCChHHHHHHHHHhhhhcccCCccCCCCcchhHHHHHHHhCCCCCCCCHHHHHHHHcccchhhhcccccccccCHHH
Confidence 999999 99999995 22221248999999999998777899999887765 3211
Q ss_pred --------CCC---------------CCChHHHHHHHHHHHHHhHHH
Q 023843 214 --------QNG---------------EHCPIDDARAAMLLYMKNRKQ 237 (276)
Q Consensus 214 --------~~~---------------~H~Al~DA~at~~L~~~l~~~ 237 (276)
.+. .|.|..||.+++.||..+..+
T Consensus 136 ~~g~~~~~kg~~~~~~~~~~~~~~~~~~YA~~Da~~t~~L~~~L~~~ 182 (698)
T 1x9m_A 136 DFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSD 182 (698)
T ss_dssp HHHHHHHHTTCCCCTTGGGTSCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhCcccccccccccccCCccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 256889999999999998653
No 20
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=98.79 E-value=8e-09 Score=99.98 Aligned_cols=120 Identities=12% Similarity=-0.046 Sum_probs=92.8
Q ss_pred CCcEEEEEEeccCCCCCCeeEEEEEEEEeCCCcEEEEEeecCCcccccccccccCCCHHHhcCCCCHHHHHHHHHHHhcC
Q 023843 79 LTDVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEG 158 (276)
Q Consensus 79 ~~~~VaiD~EttG~~~~~iiei~~v~v~~~~g~ii~~~~v~P~~~i~~~~~~i~GIt~~~l~~a~~~~ev~~~l~~~l~~ 158 (276)
+.+.|++|+|+.+.++.. .+++.+.+.. .|+..+ + . .++..|.+|+.+
T Consensus 9 ~p~~valDtE~~~~~~~~-a~Lvgi~la~-~~~a~~---i----------------~-----------~~l~~l~~~l~d 56 (540)
T 4dfk_A 9 PPEGAFVGFVLSRKEPMW-ADLLALAAAR-GGRVHR---A----------------P-----------EPYKALRDLKEA 56 (540)
T ss_dssp CCTTCEEEEEESSSCTTT-CCEEEEEEEE-TTEEEE---C----------------S-----------SHHHHHTTCSSB
T ss_pred CCCceEEEEEecCCccCc-ccEEEEEEEc-CCEEEE---e----------------h-----------hhHHHHHHHHcC
Confidence 345799999999998654 3566677764 344321 1 0 245678888888
Q ss_pred CeEEEEchhhHHHHhcccCCCCceeehhhhchhhhCCCCCccHHHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHhHHHH
Q 023843 159 RILVGHALHNDLKALLLTHSKKDLRDTSEYQPFLNRNGRSKALRHLAAEILAVEIQNGEHCPIDDARAAMLLYMKNRKQW 238 (276)
Q Consensus 159 ~~lVgHn~~~D~~~L~~~~~~~~~~Dt~~~~~~~~~~~~~~sL~~La~~~lgi~~~~~~H~Al~DA~at~~L~~~l~~~~ 238 (276)
..+|+||++||+...++... .++||+.+++++.++ +++|++||.++++. + .|.+.+||.++.+||..+..++
T Consensus 57 ~~kV~hn~K~Dl~~~Gi~~~--~~fDT~laAyLL~p~--~~~L~~La~~yl~~-~---gk~a~~DA~~t~~L~~~L~~~L 128 (540)
T 4dfk_A 57 RGLLAKDLSVLALREGLGLP--PGDDPMLLAYLLDPS--NTTPEGVARRYGGE-W---TEEAGERAALSERLFANLWGRL 128 (540)
T ss_dssp CSTTHHHHHHHHHHTTCCCC--BCCCHHHHHHHHCTT--CCCHHHHHHHHTSC-C---CSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEeccHHHHHHcCCCCC--cceeHHHHHHHhCCC--CCCHHHHHHHHhhh-h---ccchHHHHHHHHHHHHHHHHHH
Confidence 77899999999994444443 478999999999987 89999999888876 3 3789999999999999998887
No 21
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=98.78 E-value=9e-08 Score=80.39 Aligned_cols=148 Identities=16% Similarity=0.103 Sum_probs=88.7
Q ss_pred CCcEEEEEEeccCCCCC-CeeEEEEEEEEeCCCcEEEEEeec-CCcccccccc-c-ccCCCHHHhcCCCCHHHHHHHHHH
Q 023843 79 LTDVVAMDCEMVGISQG-NKSALGRVSLVNKWGNLIYDEFVR-PLERVVDFRT-R-ISGIRPRDLRKAKDFPTVQKKVAE 154 (276)
Q Consensus 79 ~~~~VaiD~EttG~~~~-~iiei~~v~v~~~~g~ii~~~~v~-P~~~i~~~~~-~-i~GIt~~~l~~a~~~~ev~~~l~~ 154 (276)
++.-+++|||+|+...+ ++|+|| +|..+|+.+|-.... +...+.++.. . +.++.........++.++..+|.+
T Consensus 21 ~m~r~FlDTEFt~d~~~~eLISIG---lV~EdGrEFYav~~d~d~~~~~~wVr~~Vlp~L~~~~~~~~~s~~~i~~~L~~ 97 (190)
T 4hec_A 21 SMVRYFYDTEFIEDGHTIELISIG---VVAEDGREYYAVSTEFDPERAGSWVRTHVLPKLPPPASQLWRSRQQIRLDLEE 97 (190)
T ss_dssp CEEEEEEEEEEEECSSCEEEEEEE---EEETTSCEEEEEETTSCGGGCCHHHHHHTGGGSCCTTSTTEECHHHHHHHHHH
T ss_pred ceeEEEEeeeecCCCCCCCEEEEE---EEcCCCCEEEEEecCCChhhCcHHHHhccccCCCCCcccccCCHHHHHHHHHH
Confidence 46789999999974432 455555 556789886644421 1224444432 2 355554333334689999999999
Q ss_pred HhcC-----CeEEEEchhhHHHHhcccCCCCceeehhhhchhhhCCCCCccHHHHHHHHhCCc----CCCCCCChHHHHH
Q 023843 155 LIEG-----RILVGHALHNDLKALLLTHSKKDLRDTSEYQPFLNRNGRSKALRHLAAEILAVE----IQNGEHCPIDDAR 225 (276)
Q Consensus 155 ~l~~-----~~lVgHn~~~D~~~L~~~~~~~~~~Dt~~~~~~~~~~~~~~sL~~La~~~lgi~----~~~~~H~Al~DA~ 225 (276)
||.. ..|++|+..||..+|...... +.+ +...+ ......|..++ +..|.+ ..++.|+||.||+
T Consensus 98 FL~~~~~~~~eLwa~~~~yD~~~L~ql~g~--m~~---lP~~~--p~~~~dlr~~~-~~~g~~~lp~~~~~~H~AL~DAR 169 (190)
T 4hec_A 98 FLRIDGTDSIELWAWVGAYDHVALCQLWGP--MTA---LPPTV--PRFTRELRQLW-EDRGCPRMPPRPRDVHDALVDAR 169 (190)
T ss_dssp HTTTTSSCEEEEEESSCHHHHHHHHTTTSS--GGG---SCTTS--CSSCEEHHHHH-HHTTCCCCCC-----CCHHHHHH
T ss_pred HHHhcCCCCCEEEEecccccHHHHHHHhcc--ccc---CCccc--chhhHHHHHHH-HHcCCCCCCCCCCCCcCcHHHHH
Confidence 9952 258999999999998732211 111 11101 11234566655 444432 1234799999999
Q ss_pred HHHHHHHHhHHH
Q 023843 226 AAMLLYMKNRKQ 237 (276)
Q Consensus 226 at~~L~~~l~~~ 237 (276)
..+..|+.+...
T Consensus 170 ~n~~~~~~~~~~ 181 (190)
T 4hec_A 170 DQLRRFRLITST 181 (190)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHhCc
Confidence 999999988654
No 22
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=98.75 E-value=6.9e-08 Score=90.89 Aligned_cols=134 Identities=17% Similarity=0.126 Sum_probs=94.2
Q ss_pred CCcEEEEEEeccCCCCCCeeEEEEEEEEeCCCcEEEEEeecCCcccccccccccCCCHHHhcCCCCHHHHHHHHHHHhc-
Q 023843 79 LTDVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIE- 157 (276)
Q Consensus 79 ~~~~VaiD~EttG~~~~~iiei~~v~v~~~~g~ii~~~~v~P~~~i~~~~~~i~GIt~~~l~~a~~~~ev~~~l~~~l~- 157 (276)
....|+||+|+++.++.. ..++.|.+....+ .. +|.|.. +. +.+..|..+|.
T Consensus 128 ~~~~vavDtE~~~~~~~~-~~l~lIQLa~~~~-~~---lidpl~-----------l~-----------~~l~~L~~lL~d 180 (428)
T 3saf_A 128 NCQEFAVNLEHHSYRSFL-GLTCLMQISTRTE-DF---IIDTLE-----------LR-----------SDMYILNESLTD 180 (428)
T ss_dssp TCSEEEEEEEEECTTCSS-CEEEEEEEECSSC-EE---EEETTT-----------TG-----------GGGGGGHHHHTC
T ss_pred cCCeEEEEEEecCCCCCC-CeEEEEEEEeCCc-EE---EEEecc-----------ch-----------hhHHHHHHHHcC
Confidence 457999999999876433 4677777776433 22 233321 00 11234666776
Q ss_pred -CCeEEEEchhhHHHHhc--ccCCCCceeehhhhchhhhCCCCCccHHHHHHHHhCCcCCCCC---------------CC
Q 023843 158 -GRILVGHALHNDLKALL--LTHSKKDLRDTSEYQPFLNRNGRSKALRHLAAEILAVEIQNGE---------------HC 219 (276)
Q Consensus 158 -~~~lVgHn~~~D~~~L~--~~~~~~~~~Dt~~~~~~~~~~~~~~sL~~La~~~lgi~~~~~~---------------H~ 219 (276)
..+.||||+++|+.+|. +......++||+.+++++.++ .++|+.|+.++||+.+..+. +.
T Consensus 181 p~i~KV~H~~k~Dl~~L~~~~Gi~~~~~fDT~lAa~lL~~~--~~gL~~Lv~~~Lg~~l~K~~~~sdW~~rpLs~~q~~Y 258 (428)
T 3saf_A 181 PAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSY 258 (428)
T ss_dssp TTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHTTCS--CCSHHHHHHHHHCCCCCCTTTTSCTTCSSCCHHHHHH
T ss_pred CCceEEEeehHHHHHHHHHHcCCCcCceeechhHHHHhCCC--CCCHHHHHHHHcCCCCCccccccccccCCCCHHHHHH
Confidence 34569999999999994 333223489999999998754 58999999999998876321 12
Q ss_pred hHHHHHHHHHHHHHhHHHHHHH
Q 023843 220 PIDDARAAMLLYMKNRKQWEKS 241 (276)
Q Consensus 220 Al~DA~at~~L~~~l~~~~e~~ 241 (276)
|..||.++..||..+..++++.
T Consensus 259 AA~DA~~ll~L~~~L~~~L~~~ 280 (428)
T 3saf_A 259 ARDDTHYLLYIYDKMRLEMWER 280 (428)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 6789999999999998887754
No 23
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=98.69 E-value=2.4e-07 Score=82.53 Aligned_cols=152 Identities=20% Similarity=0.244 Sum_probs=103.6
Q ss_pred cEEEEEEeccCCC--C-C--------------------CeeEEEEEEEEeCCCcE-----E--EEEeecCCccc-ccccc
Q 023843 81 DVVAMDCEMVGIS--Q-G--------------------NKSALGRVSLVNKWGNL-----I--YDEFVRPLERV-VDFRT 129 (276)
Q Consensus 81 ~~VaiD~EttG~~--~-~--------------------~iiei~~v~v~~~~g~i-----i--~~~~v~P~~~i-~~~~~ 129 (276)
.||+||+|++|+. | + .++++| +++.+.+|+. . |+.++.|...+ ...+.
T Consensus 35 ~fVAiDtEFpGvv~rp~~~~~~t~d~~Y~~lr~nvd~l~iIQlG-Lt~f~~~g~~p~~~~~wqFNF~f~~~~d~~~~~SI 113 (285)
T 4gmj_B 35 NYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLG-LTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSI 113 (285)
T ss_dssp CEEEEEEECCCCCCCCTTCCTTSTTHHHHHHHHHHTTSCCCEEE-EEEECTTSCCCSSCCEEEEEBCCCTTTSCCCHHHH
T ss_pred CEEEEEEEecCccCCCCCccCCCHHHHHHHHHHHHHhhcceeEE-EEeeccCCCcCCCeeEEEEEEEeccccccccHHHH
Confidence 4999999999985 1 0 378999 7788877753 1 66666665422 22222
Q ss_pred cc---cCCCHHHh-cCCCCHHHHHHHHHHH---h-cCCeEEEEchhhHHHHhc--------------------ccCCCCc
Q 023843 130 RI---SGIRPRDL-RKAKDFPTVQKKVAEL---I-EGRILVGHALHNDLKALL--------------------LTHSKKD 181 (276)
Q Consensus 130 ~i---~GIt~~~l-~~a~~~~ev~~~l~~~---l-~~~~lVgHn~~~D~~~L~--------------------~~~~~~~ 181 (276)
++ +||.-... ..+++..+..+.+... + ++..+|.|+..||+.+|- ...| .
T Consensus 114 ~fL~~~G~DF~k~~~~GI~~~~f~ell~~sglvl~~~v~WvtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP--~ 191 (285)
T 4gmj_B 114 ELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFP--V 191 (285)
T ss_dssp HHHHHHTCCHHHHHHHCBCHHHHHHHHHTSSSSSCTTCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCS--C
T ss_pred HHHHHcCCCHHHHHHcCCCHHHHHHHHHHhHHHhcCCCceEEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCc--h
Confidence 22 67764443 4566655433333221 1 356677777789998774 1123 3
Q ss_pred eeehhhhchhhhCCCCCccHHHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHhHHHH
Q 023843 182 LRDTSEYQPFLNRNGRSKALRHLAAEILAVEIQNGEHCPIDDARAAMLLYMKNRKQW 238 (276)
Q Consensus 182 ~~Dt~~~~~~~~~~~~~~sL~~La~~~lgi~~~~~~H~Al~DA~at~~L~~~l~~~~ 238 (276)
+.|+..+...+.. ...+|.+|| +.||++--+..|.|.+|++.|+.+|.++++.+
T Consensus 192 vYD~K~l~~~~~~--l~ggL~~lA-~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~~ 245 (285)
T 4gmj_B 192 IYDVKYLMKSCKN--LKGGLQEVA-EQLELERIGPQHQAGSDSLLTGMAFFKMREMF 245 (285)
T ss_dssp EEEHHHHGGGSTT--CCSCHHHHH-HHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhccc--cCChHHHHH-HhCCCCCCCCCCcchhHHHHHHHHHHHHHHHH
Confidence 8899988777653 245899999 88999987788999999999999999997654
No 24
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=98.51 E-value=2.2e-07 Score=90.87 Aligned_cols=133 Identities=13% Similarity=0.037 Sum_probs=95.8
Q ss_pred CCcEEEEEEeccCCCCCCeeEEEEEEEEeCCCcEEEEEeecCCcccccccccccCCCHHHhcCCCCHHHHHHHHHHHhc-
Q 023843 79 LTDVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIE- 157 (276)
Q Consensus 79 ~~~~VaiD~EttG~~~~~iiei~~v~v~~~~g~ii~~~~v~P~~~i~~~~~~i~GIt~~~l~~a~~~~ev~~~l~~~l~- 157 (276)
...-.++|+|+++.++.. .+++.+.+.... ... || |.. . ..+...|..||.
T Consensus 28 ~~~~~aldtE~~~~~~~~-a~Lvgisla~~~-~a~---yI-p~~---------------~-------~~~l~~Lk~lLed 79 (592)
T 3pv8_A 28 LADKAALVVEVVEENYHD-APIVGIAVVNEH-GRF---FL-RPE---------------T-------ALADPQFVAWLGD 79 (592)
T ss_dssp GCSEEEEEEECCSSSCTT-CCCCEEEEEETT-EEE---EE-CHH---------------H-------HTTCHHHHHHHTC
T ss_pred hccCcEEEEEEcCCccCc-ccEEEEEEEcCC-ceE---EE-ccc---------------h-------hhHHHHHHHHHhC
Confidence 445679999999998654 356667777643 222 22 210 0 123456888886
Q ss_pred -CCeEEEEchhhHHHHhc---ccCCCCceeehhhhchhhhCCCCCccHHHHHHHHhCCcCCCC-----------------
Q 023843 158 -GRILVGHALHNDLKALL---LTHSKKDLRDTSEYQPFLNRNGRSKALRHLAAEILAVEIQNG----------------- 216 (276)
Q Consensus 158 -~~~lVgHn~~~D~~~L~---~~~~~~~~~Dt~~~~~~~~~~~~~~sL~~La~~~lgi~~~~~----------------- 216 (276)
....|+||+++|+.+|. +..+. .++||+..++++.+...+++|++|+.+++|..+...
T Consensus 80 ~~i~KV~hn~K~Dl~vL~~~Gi~l~g-~~fDTmLAAYLL~p~~~~~~L~~La~~yLg~~l~~~ee~~gkg~~~~~~~~e~ 158 (592)
T 3pv8_A 80 ETKKKSMFDSKRAAVALKWKGIELCG-VSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPV 158 (592)
T ss_dssp TTSEEEESSHHHHHHHHHHTTCCCCC-EEEEHHHHHHHHCGGGCCCSHHHHHGGGTCCSSCCHHHHHCSGGGCCCCCHHH
T ss_pred CCCeEEEechHHHHHHHHHcCCCCCC-ccchHHHHHHHcCCCCCCCCHHHHHHHHcCCCCchHHHhcCccccccCccHHH
Confidence 45789999999999996 33322 378999999999988889999999999998775411
Q ss_pred -CCChHHHHHHHHHHHHHhHHHHHH
Q 023843 217 -EHCPIDDARAAMLLYMKNRKQWEK 240 (276)
Q Consensus 217 -~H~Al~DA~at~~L~~~l~~~~e~ 240 (276)
.+.|..||.++.+|+..+..++++
T Consensus 159 ~~~YAa~DA~~l~~L~~~L~~~L~e 183 (592)
T 3pv8_A 159 LAEHLVRKAAAIWELERPFLDELRR 183 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 123678999999999999877664
No 25
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=98.38 E-value=1.7e-06 Score=73.20 Aligned_cols=135 Identities=18% Similarity=0.183 Sum_probs=85.5
Q ss_pred CcEEEEEEeccCC--CCCCeeEEEEEEEEeCCCcEEEEEeecCCcccccccccccCCCHHHhcCCCCHHHHHHHHHHHhc
Q 023843 80 TDVVAMDCEMVGI--SQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIE 157 (276)
Q Consensus 80 ~~~VaiD~EttG~--~~~~iiei~~v~v~~~~g~ii~~~~v~P~~~i~~~~~~i~GIt~~~l~~a~~~~ev~~~l~~~l~ 157 (276)
..+|+||+|+++. +... ..++.+.+....+..+| +.+.. +. .+...|..++.
T Consensus 40 ~~~v~~D~E~~~~~~~~~~-~~~~~iqla~~~~~~~~---i~~~~-----------~~-----------~~~~~L~~lL~ 93 (208)
T 2e6m_A 40 GDVVGFDMEWPPIYKPGKR-SRVAVIQLCVSESKCYL---FHISS-----------MS-----------VFPQGLKMLLE 93 (208)
T ss_dssp TCEEEEEEECCC---CCSC-CCCCEEEEECSSSEEEE---ECGGG-----------CS-----------SCCHHHHHHHT
T ss_pred CCEEEEEeecCCCCCCCCC-CCeEEEEEecCCCeEEE---EECcc-----------cc-----------cchHHHHHHhc
Confidence 3689999999886 2111 23444555443344433 21110 00 01234677886
Q ss_pred C--CeEEEEchhhHHHHhc--ccCCCCceee-hhhhchhhhCCCCCccHHHHHHHHhCCcCCCC---------C------
Q 023843 158 G--RILVGHALHNDLKALL--LTHSKKDLRD-TSEYQPFLNRNGRSKALRHLAAEILAVEIQNG---------E------ 217 (276)
Q Consensus 158 ~--~~lVgHn~~~D~~~L~--~~~~~~~~~D-t~~~~~~~~~~~~~~sL~~La~~~lgi~~~~~---------~------ 217 (276)
+ ...||||+++|+.+|. ....-..++| |+..++++.+ ..+++|..|+.+++|.....+ .
T Consensus 94 d~~i~Kv~~~~k~D~~~L~~~~gi~~~~~fDlt~lAayll~~-~~~~~L~~L~~~~l~~~~~K~k~~~~s~W~~~~L~~~ 172 (208)
T 2e6m_A 94 NKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTED 172 (208)
T ss_dssp CTTSEEEESSHHHHHHHHHHHHCCCCCSEEEHHHHHHHHTTC-CCCCCHHHHHHHHHSCBCCCCHHHHTSCTTSSSCCHH
T ss_pred CCCceEEEEeeHHHHHHHHHHCCCCCCCEEEHHHHHHHHccC-CCChhHHHHHHHHcCCCcCCCCCeeeCCCCCCCCCHH
Confidence 3 5679999999999996 2333233889 8888888875 568999999988888765211 0
Q ss_pred --CChHHHHHHHHHHHHHhHHHHHHH
Q 023843 218 --HCPIDDARAAMLLYMKNRKQWEKS 241 (276)
Q Consensus 218 --H~Al~DA~at~~L~~~l~~~~e~~ 241 (276)
+.|..||.++..||..+..++++.
T Consensus 173 q~~YAa~Da~~~~~L~~~L~~~L~~~ 198 (208)
T 2e6m_A 173 QKLYAATDAYAGLIIYQKLGNLGDTV 198 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchh
Confidence 126789999999999998776553
No 26
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=98.35 E-value=5e-06 Score=76.86 Aligned_cols=132 Identities=22% Similarity=0.263 Sum_probs=89.5
Q ss_pred CcEEEEEEeccCCCCCCeeEEEEEEEEeCCCcEEEEEeecCCcccccccccccCCCHHHhcCCCCHHHHHHHHHHHhcC-
Q 023843 80 TDVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEG- 158 (276)
Q Consensus 80 ~~~VaiD~EttG~~~~~iiei~~v~v~~~~g~ii~~~~v~P~~~i~~~~~~i~GIt~~~l~~a~~~~ev~~~l~~~l~~- 158 (276)
..+|+||+|+++..... ..++.|.+... +. +| ++.|. .+. . +..|..++.+
T Consensus 22 ~~~va~D~E~~~~~~~~-~~l~liqla~~-~~-~~--lid~~-----------~l~--------~----~~~L~~ll~d~ 73 (375)
T 1yt3_A 22 FPAIALDTEFVRTRTYY-PQLGLIQLFDG-EH-LA--LIDPL-----------GIT--------D----WSPLKAILRDP 73 (375)
T ss_dssp SSEEEEEEEEECCSCSS-CEEEEEEEECS-SC-EE--EECGG-----------GCS--------C----CHHHHHHHHCT
T ss_pred CCeEEEEeeecCCCcCC-CceEEEEEecC-Cc-EE--EEeCC-----------CCC--------C----hHHHHHHHcCC
Confidence 46899999999875321 24666666643 22 22 12221 010 1 2346677753
Q ss_pred -CeEEEEchhhHHHHhc--ccCCCCceeehhhhchhhhCCCCCccHHHHHHHHhCCcCCCCC---------------CCh
Q 023843 159 -RILVGHALHNDLKALL--LTHSKKDLRDTSEYQPFLNRNGRSKALRHLAAEILAVEIQNGE---------------HCP 220 (276)
Q Consensus 159 -~~lVgHn~~~D~~~L~--~~~~~~~~~Dt~~~~~~~~~~~~~~sL~~La~~~lgi~~~~~~---------------H~A 220 (276)
.+.||||+++|+.+|. +......++||+..++++.+ ..+++|..|+.+++|.....+. +.|
T Consensus 74 ~i~Kv~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~lL~~-~~~~~L~~L~~~~l~~~l~K~~~~sdw~~rpL~~~q~~YA 152 (375)
T 1yt3_A 74 SITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGR-PMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYA 152 (375)
T ss_dssp TSEEEESSCHHHHHHHHHHHSSCCSSEEEHHHHHHHTTC-CTTCCHHHHHHHHHCCCCCCTTTTSCTTSSSCCHHHHHHH
T ss_pred CceEEEeeHHHHHHHHHHHcCCCCCcEEEcHHHHHHcCC-CCChhHHHHHHHHcCCCCCCCcccCCCCCCCCCHHHHHHH
Confidence 4579999999999995 33322358999999999975 4589999999889897765321 115
Q ss_pred HHHHHHHHHHHHHhHHHHHH
Q 023843 221 IDDARAAMLLYMKNRKQWEK 240 (276)
Q Consensus 221 l~DA~at~~L~~~l~~~~e~ 240 (276)
..||.++..||..+..++++
T Consensus 153 a~Da~~l~~L~~~L~~~L~~ 172 (375)
T 1yt3_A 153 AADVWYLLPITAKLMVETEA 172 (375)
T ss_dssp HHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999877653
No 27
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=98.34 E-value=3.9e-06 Score=78.61 Aligned_cols=133 Identities=16% Similarity=0.086 Sum_probs=89.7
Q ss_pred CCcEEEEEEeccCCCCCCeeEEEEEEEEeCCCcEEEEEeecCCcccccccccccCCCHHHhcCCCCHHHHHHHHHHHhc-
Q 023843 79 LTDVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIE- 157 (276)
Q Consensus 79 ~~~~VaiD~EttG~~~~~iiei~~v~v~~~~g~ii~~~~v~P~~~i~~~~~~i~GIt~~~l~~a~~~~ev~~~l~~~l~- 157 (276)
...+|+||+|+++..... ..++.|.|... +.+++ +.|. .+. +.+..|..++.
T Consensus 105 ~~~~vavDtE~~~~~~~~-~~l~liQla~~-~~~yl---id~l-----------~l~-----------~~l~~L~~lL~d 157 (410)
T 2hbj_A 105 NTKEIAVDLEHHDYRSYY-GIVCLMQISTR-ERDYL---VDTL-----------KLR-----------ENLHILNEVFTN 157 (410)
T ss_dssp TCSEEEEEEEEECSSSSS-CEEEEEEEECS-SCEEE---EETT-----------TTT-----------TTGGGGHHHHTC
T ss_pred hCCceEEEeeecCCcCCC-CcEEEEEEEEC-CcEEE---Eech-----------hhh-----------hhHHHHHHHHcC
Confidence 346799999999875321 34666666653 33221 2221 110 01233666776
Q ss_pred -CCeEEEEchhhHHHHhc--ccCCCCceeehhhhchhhhCCCCCccHHHHHHHHhCCcCCCCC---------------CC
Q 023843 158 -GRILVGHALHNDLKALL--LTHSKKDLRDTSEYQPFLNRNGRSKALRHLAAEILAVEIQNGE---------------HC 219 (276)
Q Consensus 158 -~~~lVgHn~~~D~~~L~--~~~~~~~~~Dt~~~~~~~~~~~~~~sL~~La~~~lgi~~~~~~---------------H~ 219 (276)
+.+.||||+++|+.+|. +......++||+.+++++.++ +++|..|+.+++|.....+. +.
T Consensus 158 ~~i~KV~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~LL~~~--~~~L~~L~~~~lg~~l~K~~~~sdW~~rpL~~~q~~Y 235 (410)
T 2hbj_A 158 PSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLP--RHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAA 235 (410)
T ss_dssp TTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHTCS--CCSHHHHHHHHSCCCCCCTTTTSCTTCSSCCHHHHHH
T ss_pred CCceEEEEehHHHHHHHHHHcCCCcCCEEEcHHHHHHhCCC--ccCHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHH
Confidence 35579999999999995 333333489999999998754 68999999888887765321 12
Q ss_pred hHHHHHHHHHHHHHhHHHHHH
Q 023843 220 PIDDARAAMLLYMKNRKQWEK 240 (276)
Q Consensus 220 Al~DA~at~~L~~~l~~~~e~ 240 (276)
|..||.++..||..+..++++
T Consensus 236 Aa~Da~~ll~L~~~L~~~L~~ 256 (410)
T 2hbj_A 236 ARADTHFLLNIYDQLRNKLIE 256 (410)
T ss_dssp HHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 678999999999999887764
No 28
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=98.25 E-value=2.1e-05 Score=68.74 Aligned_cols=154 Identities=19% Similarity=0.191 Sum_probs=102.6
Q ss_pred cEEEEEEeccCCC--C---------------------CCeeEEEEEEEEeCCCcE-----E--EEEeecCCc-ccccccc
Q 023843 81 DVVAMDCEMVGIS--Q---------------------GNKSALGRVSLVNKWGNL-----I--YDEFVRPLE-RVVDFRT 129 (276)
Q Consensus 81 ~~VaiD~EttG~~--~---------------------~~iiei~~v~v~~~~g~i-----i--~~~~v~P~~-~i~~~~~ 129 (276)
.||+||+|++|+. | -.++++| +++.+.+|+. . |+.+..... .....+.
T Consensus 25 ~fvAmDtEFpGvv~rp~g~f~~~~~~~Y~~lr~nVd~l~iIQlG-lt~~~~~g~~p~~~~~wqFNF~F~~~~d~~~~~Si 103 (252)
T 2d5r_A 25 NYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLG-LTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSI 103 (252)
T ss_dssp CEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEE-EEEECTTSCCCSSCCEEEEEBCCCTTTSCCCHHHH
T ss_pred CEEEEEeeecceecccCCCCCCCHHHHHHHHHHhhhhcceeEEE-EEEEccCCCCCCCceeEEEEEEECCcccccCHHHH
Confidence 5999999999995 1 1378999 8888877763 2 555544332 1111111
Q ss_pred ---cccCCCHHHh-cCCCCHHHHHHHHHH---Hh-cCCeEEEEchhhHHHHhc-----ccCC-------------CCcee
Q 023843 130 ---RISGIRPRDL-RKAKDFPTVQKKVAE---LI-EGRILVGHALHNDLKALL-----LTHS-------------KKDLR 183 (276)
Q Consensus 130 ---~i~GIt~~~l-~~a~~~~ev~~~l~~---~l-~~~~lVgHn~~~D~~~L~-----~~~~-------------~~~~~ 183 (276)
.-+||.-... ..+++..+..+.+.. .+ ++..+|.|+..+|+.+|- -..| ...+.
T Consensus 104 ~fL~~~G~DF~k~~~~GI~~~~F~ell~~sglvl~~~v~Witfhg~yDf~yL~k~L~~~~LP~~~~~F~~~l~~~FP~iy 183 (252)
T 2d5r_A 104 ELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIY 183 (252)
T ss_dssp HHHHHHTCCHHHHHHHCBCHHHHHHHHHTTTSSSSSSCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEE
T ss_pred HHHHHcCCChhHHHhcCCCHHHHHHHHHhcCcccCCCceEEEecCcchHHHHHHHhcCCCCCCCHHHHHHHHHHHCcchh
Confidence 2256665443 556666543333221 11 245778999999998774 1111 12488
Q ss_pred ehhhhchhhhCCCCCccHHHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHhHHHH
Q 023843 184 DTSEYQPFLNRNGRSKALRHLAAEILAVEIQNGEHCPIDDARAAMLLYMKNRKQW 238 (276)
Q Consensus 184 Dt~~~~~~~~~~~~~~sL~~La~~~lgi~~~~~~H~Al~DA~at~~L~~~l~~~~ 238 (276)
|+..++..+. .. ..+|..|| +.||+.-.+..|.|-+|+..|..+|.++...+
T Consensus 184 D~K~l~~~~~-~l-~~gL~~la-~~L~v~r~g~~HqAGsDsllT~~~F~km~~~~ 235 (252)
T 2d5r_A 184 DVKYLMKSCK-NL-KGGLQEVA-EQLELERIGPQHQAGSDSLLTGMAFFKMREMF 235 (252)
T ss_dssp EHHHHGGGCT-TC-CSSHHHHH-HHHTCCCCSSTTSHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHhc-cc-CCCHHHHH-HHcCCCccCcccchhhhHHHHHHHHHHHHHHh
Confidence 9998888775 22 46899999 88998887788999999999999999996553
No 29
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=98.20 E-value=1.9e-06 Score=73.36 Aligned_cols=132 Identities=14% Similarity=0.102 Sum_probs=84.6
Q ss_pred CcEEEEEEecc-CCC----CCCe--eEEEEEEEEeCCCcEEEEEeecCCcccccccccccCCCHHHhcCCCCHHHHHHHH
Q 023843 80 TDVVAMDCEMV-GIS----QGNK--SALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRKAKDFPTVQKKV 152 (276)
Q Consensus 80 ~~~VaiD~Ett-G~~----~~~i--iei~~v~v~~~~g~ii~~~~v~P~~~i~~~~~~i~GIt~~~l~~a~~~~ev~~~l 152 (276)
..+|+||+|+. +.. .... -.++.|.+.+.++ ++. +++... +. ..+..|
T Consensus 46 ~~vvg~DtEw~p~~~~~~~~~~~~~~~~~LiQla~~~~-~~l---~~l~~~----------~~-----------~~L~~L 100 (206)
T 1vk0_A 46 NRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNL-CLF---LRLPKP----------FH-----------DNLKDL 100 (206)
T ss_dssp TTEEEEEEEEECCC------CGGGGCEEEEEEEECSSE-EEE---EECCSS----------CC-----------GGGHHH
T ss_pred CCEEEEEeeccCCCcccccccCCCCCceEEEEEecCCC-eEE---Eecccc----------CC-----------ccHHHH
Confidence 46999999987 430 0111 2677777877543 322 221010 11 112236
Q ss_pred HHHhc--CCeEEEEchhhHHHHhc--ccCCCCceeehhhhchhhhCC--CCCccHHHHHHHHhCCcC-CCC---------
Q 023843 153 AELIE--GRILVGHALHNDLKALL--LTHSKKDLRDTSEYQPFLNRN--GRSKALRHLAAEILAVEI-QNG--------- 216 (276)
Q Consensus 153 ~~~l~--~~~lVgHn~~~D~~~L~--~~~~~~~~~Dt~~~~~~~~~~--~~~~sL~~La~~~lgi~~-~~~--------- 216 (276)
.+||. +.+.|||++.+|+..|. +......++|+..++....+. ..+.+|..|+.++||+++ +..
T Consensus 101 ~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~lK~k~~~~SdW~~p 180 (206)
T 1vk0_A 101 YRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEKA 180 (206)
T ss_dssp HHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCCHHHHHHHHTGGGS
T ss_pred HHHhcCCCceEEEeccHHHHHHHHHhcCCCcCCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhCCcCCCCCcccCCCCCc
Confidence 66786 46779999999999996 232334589997655333222 467899999999999988 210
Q ss_pred -----CCChHHHHHHHHHHHHHhHH
Q 023843 217 -----EHCPIDDARAAMLLYMKNRK 236 (276)
Q Consensus 217 -----~H~Al~DA~at~~L~~~l~~ 236 (276)
-+.|..||.++..||.++..
T Consensus 181 Ls~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 181 GPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 12489999999999998864
No 30
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=98.20 E-value=2.5e-05 Score=69.56 Aligned_cols=156 Identities=18% Similarity=0.142 Sum_probs=100.0
Q ss_pred CcEEEEEEeccCCC--C---------------------CCeeEEEEEEEEeCCCcE-------E-EEEeecCCcc-cccc
Q 023843 80 TDVVAMDCEMVGIS--Q---------------------GNKSALGRVSLVNKWGNL-------I-YDEFVRPLER-VVDF 127 (276)
Q Consensus 80 ~~~VaiD~EttG~~--~---------------------~~iiei~~v~v~~~~g~i-------i-~~~~v~P~~~-i~~~ 127 (276)
-.||+||+|++|+. + -.++++| +++.+.+|+. . |+.+....+. ....
T Consensus 38 ~~fVAmDtEFpGvv~rp~g~f~~~~d~~Yq~lr~nVd~l~iIQlG-Lt~~~~~g~~p~~~~~~wqFNF~F~~~~d~~~~~ 116 (289)
T 1uoc_A 38 YNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLG-LSLSDANGNKPDNGPSTWQFNFEFDPKKEIMSTE 116 (289)
T ss_dssp SCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEE-EEEECTTCCCCSSSCSEEEEEBCCCTTCCCCCHH
T ss_pred CCEEEEEeeecceeccCCcccCCCHHHHHHHHHHhhhhccceEEE-EEEEccCCCcCCCCcceEEEEEEECCccccccHH
Confidence 46999999999995 1 1378898 8888877653 1 6665443321 1111
Q ss_pred cc---cccCCCHHHh-cCCCCHHHHHHHHHH--Hh--cCCeEEEEchhhHHHHhc-----ccCC-------------CCc
Q 023843 128 RT---RISGIRPRDL-RKAKDFPTVQKKVAE--LI--EGRILVGHALHNDLKALL-----LTHS-------------KKD 181 (276)
Q Consensus 128 ~~---~i~GIt~~~l-~~a~~~~ev~~~l~~--~l--~~~~lVgHn~~~D~~~L~-----~~~~-------------~~~ 181 (276)
+. .-+||.-... ..+++..+....+.. ++ ++..+|.++..||+.+|- -..| ...
T Consensus 117 SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~sgLvl~~~v~Witfhg~yDfgyL~k~Lt~~~LP~~~~~F~~~l~~~FP~ 196 (289)
T 1uoc_A 117 SLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYMPN 196 (289)
T ss_dssp HHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTSSCSSCTTSEEEESSTTHHHHHHHHHHTTSCCCSSHHHHHHHHHHHCSS
T ss_pred HHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCCccCCCceEEEccCcchHHHHHHHhccccCCcCHHHHHHHHHHhCcc
Confidence 11 2267765443 556666533222211 01 245778899999998774 1111 124
Q ss_pred eeehhhhchhhhCCC-------------CCccHHHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHhHHH
Q 023843 182 LRDTSEYQPFLNRNG-------------RSKALRHLAAEILAVEIQNGEHCPIDDARAAMLLYMKNRKQ 237 (276)
Q Consensus 182 ~~Dt~~~~~~~~~~~-------------~~~sL~~La~~~lgi~~~~~~H~Al~DA~at~~L~~~l~~~ 237 (276)
+.|+..+...+.... ...+|..|| +.||++..+..|.|-+|+..|..+|.++...
T Consensus 197 iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA-~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~ 264 (289)
T 1uoc_A 197 FYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLA-DELGLPRFSIFTTTGGQSLLMLLSFCQLSKL 264 (289)
T ss_dssp EEEHHHHHHHHTTTCC-------------CCSHHHHH-HHTTCCCCGGGGSHHHHHHHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHhccCcccccccccccccCCCHHHHH-HHcCCCccCcccccHHHHHHHHHHHHHHHHH
Confidence 889888877664221 246899999 8899988877899999999999999998765
No 31
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=98.16 E-value=3.7e-05 Score=69.44 Aligned_cols=155 Identities=18% Similarity=0.173 Sum_probs=104.6
Q ss_pred CcEEEEEEeccCCC--C---------------------CCeeEEEEEEEEeCCCcE-----E--EEEeecCCc-cccccc
Q 023843 80 TDVVAMDCEMVGIS--Q---------------------GNKSALGRVSLVNKWGNL-----I--YDEFVRPLE-RVVDFR 128 (276)
Q Consensus 80 ~~~VaiD~EttG~~--~---------------------~~iiei~~v~v~~~~g~i-----i--~~~~v~P~~-~i~~~~ 128 (276)
-.||+||+|++|+. + -.+++|| +++.+.+|+. . |+.+....+ .....+
T Consensus 45 ~~fVAmDtEFpGvv~rp~g~f~~~~e~~Yq~lR~NVd~l~iIQlG-Lt~fd~~G~~p~~~~twqFNF~F~~~~d~~~~~S 123 (333)
T 2p51_A 45 YPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIG-LALSDEEGNAPVEACTWQFNFTFNLQDDMYAPES 123 (333)
T ss_dssp SCEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEEE-EEEECTTSCCCTTCSEEEEEBCCCTTTSCCCHHH
T ss_pred CCEEEEeeeccccccccccccCCCHHHHHHHHHHhhhhccceEEE-EEEEccCCCCCCCceeEEEEEEECCcccccCHHH
Confidence 46999999999996 1 1368899 8888887764 2 666644332 111111
Q ss_pred c---cccCCCHHHh-cCCCCHHHHHHHHHH--Hh--cCCeEEEEchhhHHHHhc-----ccCC-------------CCce
Q 023843 129 T---RISGIRPRDL-RKAKDFPTVQKKVAE--LI--EGRILVGHALHNDLKALL-----LTHS-------------KKDL 182 (276)
Q Consensus 129 ~---~i~GIt~~~l-~~a~~~~ev~~~l~~--~l--~~~~lVgHn~~~D~~~L~-----~~~~-------------~~~~ 182 (276)
. .-+||.-... ..+++..+....+.. ++ ++..+|.++..||+.+|- -..| ...+
T Consensus 124 I~fL~~~G~DF~k~~~~GI~~~~F~elL~~SGLvl~~~V~Witfhg~YDfgyLlK~Lt~~~LP~~~~eF~~~l~~~FP~i 203 (333)
T 2p51_A 124 IELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFPKN 203 (333)
T ss_dssp HHHHHHTTCCHHHHHHHCBCHHHHHHHHHTTTSSSCTTCEEEESSCHHHHHHHHHHHHCSCCCSSHHHHHHHHHHHSSSE
T ss_pred HHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCcccCCCceEEEeccchhHHHHHHHhcCCCCCCCHHHHHHHHHHHCcch
Confidence 1 2267775543 566766654333321 11 245778889999998773 1111 1248
Q ss_pred eehhhhchhhhCCCCCccHHHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHhHHHH
Q 023843 183 RDTSEYQPFLNRNGRSKALRHLAAEILAVEIQNGEHCPIDDARAAMLLYMKNRKQW 238 (276)
Q Consensus 183 ~Dt~~~~~~~~~~~~~~sL~~La~~~lgi~~~~~~H~Al~DA~at~~L~~~l~~~~ 238 (276)
.|+..++..+.. -.-+|..|| +.||+.-.+..|.|-+|++.|+.+|.++...+
T Consensus 204 YD~K~l~~~~~~--l~ggL~~lA-~~L~v~Rig~~HqAGsDSlLT~~~F~kl~~~~ 256 (333)
T 2p51_A 204 YDIKYIMKSVLN--NSKGLQDIA-DDLQIHRIGPQHQAGSDALLTARIFFEIRSRY 256 (333)
T ss_dssp EEHHHHHTTTTC--CCCCHHHHH-HHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhcc--ccCCHHHHH-HHcCCCccCcchhhhhHHHHHHHHHHHHHHHh
Confidence 899888877652 246899999 88998888889999999999999999998764
No 32
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=98.13 E-value=4.1e-05 Score=72.27 Aligned_cols=132 Identities=15% Similarity=0.113 Sum_probs=88.2
Q ss_pred cEEEEEEeccCCCCCCeeEEEEEEEEeCCCcEEEEEeecCCcccccccccccCCCHHHhc-CCCCHHHHHHHHHHHhcCC
Q 023843 81 DVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLR-KAKDFPTVQKKVAELIEGR 159 (276)
Q Consensus 81 ~~VaiD~EttG~~~~~iiei~~v~v~~~~g~ii~~~~v~P~~~i~~~~~~i~GIt~~~l~-~a~~~~ev~~~l~~~l~~~ 159 (276)
.+|+||+|++...... ..++.|.|....+..+| |.|. .+. .+.. +..|..++.+.
T Consensus 39 ~~vavDtE~~~~~~~~-~~l~liQla~~~~~~~l---id~l----------------~~~~~~~~----l~~L~~lL~d~ 94 (440)
T 3cym_A 39 GSLAADAERASGFRYG-HEDWLVQFKRDGAGIGL---LDPQ----------------ALAAAGAD----WNDFNRAVGDA 94 (440)
T ss_dssp EEEEEEEEECTTTSSS-CCEEEEEEEEETTEEEE---ECHH----------------HHHHTTCC----HHHHHHHHTTC
T ss_pred CeEEEEeeecCCCCCC-CCEEEEEEEECCCcEEE---EEcC----------------CccccccC----HHHHHHHHCCC
Confidence 6899999988754211 23555555433343332 2220 000 0011 34577788877
Q ss_pred eEEEEchhhHHHHhc---ccCCCCceeehhhhchhhhCCCCCccHHHHHHHHhCCcCCCCC---------------CChH
Q 023843 160 ILVGHALHNDLKALL---LTHSKKDLRDTSEYQPFLNRNGRSKALRHLAAEILAVEIQNGE---------------HCPI 221 (276)
Q Consensus 160 ~lVgHn~~~D~~~L~---~~~~~~~~~Dt~~~~~~~~~~~~~~sL~~La~~~lgi~~~~~~---------------H~Al 221 (276)
..|+|++.+|+.+|. +... .++||+..++++.+ . +++|..|+..++|.....+. ..|.
T Consensus 95 ~KV~h~~k~Dl~~L~~~gi~~~--~~fDt~lAa~lL~~-~-~~gL~~L~~~~lg~~~~K~~~~sdw~~rpLs~~q~~YAa 170 (440)
T 3cym_A 95 VWILHDSLQDLPGFDELGMEPQ--RLFDTEIAARLLGL-K-RFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDWRNYAA 170 (440)
T ss_dssp EEEESSHHHHHHHHHHHTCCCC--EEEEHHHHHHHTTC-S-SCSHHHHHHHHHCEECCCCCTTCCTTCSSCCHHHHHHHH
T ss_pred CEEEEcCHHHHHHHHHcCCcCC--ceehHHHHHHHhCC-C-CCCHHHHHHHHhCCCcccccccCCCcCCCCCHHHHHHHH
Confidence 889999999999985 3332 58999999999986 3 89999999888886554321 1277
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q 023843 222 DDARAAMLLYMKNRKQWEK 240 (276)
Q Consensus 222 ~DA~at~~L~~~l~~~~e~ 240 (276)
.||.++..||..+..+++.
T Consensus 171 ~Da~~Ll~L~~~L~~~L~~ 189 (440)
T 3cym_A 171 LDVELLIELETKMRAELKR 189 (440)
T ss_dssp HHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8999999999999776653
No 33
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=97.84 E-value=0.0003 Score=70.80 Aligned_cols=141 Identities=10% Similarity=0.006 Sum_probs=87.7
Q ss_pred CCCcEEEEEEeccCC---CCCCeeEEEEEEEEeCCCcEEEEEeecCCcccccccccccCCCHHHhcCCCCHHHHHHHHHH
Q 023843 78 SLTDVVAMDCEMVGI---SQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAE 154 (276)
Q Consensus 78 ~~~~~VaiD~EttG~---~~~~iiei~~v~v~~~~g~ii~~~~v~P~~~i~~~~~~i~GIt~~~l~~a~~~~ev~~~l~~ 154 (276)
..-++++||+||+|. ++.. ..|..|++.+..+..++. ++| +....+...++..+.+..|.+
T Consensus 133 ~~l~ilsfDIEt~~~~~p~~~~-d~Ii~Is~~~~~~~~~~t--~~~-------------i~~~~v~~~~~E~~LL~~f~~ 196 (775)
T 1qht_A 133 EELTMLAFAIATLYHEGEEFGT-GPILMISYADGSEARVIT--WKK-------------IDLPYVDVVSTEKEMIKRFLR 196 (775)
T ss_dssp CCCCEEEEEEEECCCTTCCTTC-SCEEEEEEECSSCEEEEE--SSC-------------CCCSSEEECSCHHHHHHHHHH
T ss_pred CCcEEEEEEEEEcCCCCCCCCC-CcEEEEEEEecCCCeeEe--ecc-------------ccccceEEcCCHHHHHHHHHH
Confidence 466899999999983 3221 233334454443433221 111 111123445677888888888
Q ss_pred Hhc---CCeEEEEch-hhHHHHhc-------ccCC----------------------CCceeehhhhchhhhCCCCCccH
Q 023843 155 LIE---GRILVGHAL-HNDLKALL-------LTHS----------------------KKDLRDTSEYQPFLNRNGRSKAL 201 (276)
Q Consensus 155 ~l~---~~~lVgHn~-~~D~~~L~-------~~~~----------------------~~~~~Dt~~~~~~~~~~~~~~sL 201 (276)
++. ..+|||||+ .||+.+|. +... ...++|+..+.+... ...+++|
T Consensus 197 ~i~~~dPDiivGyN~~~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~-~l~sysL 275 (775)
T 1qht_A 197 VVREKDPDVLITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTI-NLPTYTL 275 (775)
T ss_dssp HHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHS-CCSCCCH
T ss_pred HHHhcCCCEEEEeCCCCccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhc-CcCcCCH
Confidence 885 458999999 89999885 1111 122557766554432 5678999
Q ss_pred HHHHHHHhCCcCCCCC------------------CChHHHHHHHHHHHHHhH
Q 023843 202 RHLAAEILAVEIQNGE------------------HCPIDDARAAMLLYMKNR 235 (276)
Q Consensus 202 ~~La~~~lgi~~~~~~------------------H~Al~DA~at~~L~~~l~ 235 (276)
+++|..+||.....-. +..+.||..+..|+.++.
T Consensus 276 ~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~ 327 (775)
T 1qht_A 276 EAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFF 327 (775)
T ss_dssp HHHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCccCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999888997544211 114779999999987654
No 34
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=97.64 E-value=0.0012 Score=61.02 Aligned_cols=157 Identities=11% Similarity=0.061 Sum_probs=90.7
Q ss_pred CCCCcEEEEEEeccCCC-CC--C-eeEEEEEEEEeCCCcE--EEEEeecCCccccccc---------ccccCCCHH---H
Q 023843 77 FSLTDVVAMDCEMVGIS-QG--N-KSALGRVSLVNKWGNL--IYDEFVRPLERVVDFR---------TRISGIRPR---D 138 (276)
Q Consensus 77 ~~~~~~VaiD~EttG~~-~~--~-iiei~~v~v~~~~g~i--i~~~~v~P~~~i~~~~---------~~i~GIt~~---~ 138 (276)
.++-++++||+||++.. |+ . ..+|..|++.+..+.. +|..+-+|.....++. ..+..-.+. .
T Consensus 103 ~p~l~vlsfDIEt~~~~fP~~~~~~d~Ii~Is~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 182 (388)
T 1noy_A 103 RKFVRVANCDIEVTGDKFPDPMKAEYEIDAITHYDSIDDRFYVFDLLNSMYGSVSKWDAKLAAKLDCEGGDEVPQEILDR 182 (388)
T ss_dssp GGGCCEEEEEEEECCSSCCCTTTCCSCEEEEEEEETTTTEEEEEEECCCSSCCCCCCCHHHHHSCGGGTCCCCCHHHHTT
T ss_pred CCCeEEEEEEEEeCCCCCCCCCCCCCeEEEEEEEEecCCeEEEEEEeeccCCCCCccccccccccccccccccccccCCC
Confidence 45678999999999811 22 1 1244445555544443 2322222221111110 001111111 1
Q ss_pred --hcCCCCHHHHHHHHHHHhc---CCeEEEEch-hhHHHHhc------cc---------CCC------------------
Q 023843 139 --LRKAKDFPTVQKKVAELIE---GRILVGHAL-HNDLKALL------LT---------HSK------------------ 179 (276)
Q Consensus 139 --l~~a~~~~ev~~~l~~~l~---~~~lVgHn~-~~D~~~L~------~~---------~~~------------------ 179 (276)
+....+..+.+..|.+++. ..+++|||+ .||+.+|. +. ..+
T Consensus 183 v~v~~~~~E~~LL~~f~~~i~~~dPDii~GyN~~~FDlpyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~g~~~~~~i 262 (388)
T 1noy_A 183 VIYMPFDNERDMLMEYINLWEQKRPAIFTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKEIYSI 262 (388)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHSCCSEEECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSCEEEEE
T ss_pred eEEEEcCCHHHHHHHHHHHHHHhCCcEEEecCCCCccHHHHHHHHHHHcCCccccccCcccccccccChhhhCCcceEEE
Confidence 1234567889999999884 579999999 99998774 11 010
Q ss_pred --CceeehhhhchhhhCC-CCCccHHHHHHHHhCCcCCCCCCC----------------hHHHHHHHHHHHHHh
Q 023843 180 --KDLRDTSEYQPFLNRN-GRSKALRHLAAEILAVEIQNGEHC----------------PIDDARAAMLLYMKN 234 (276)
Q Consensus 180 --~~~~Dt~~~~~~~~~~-~~~~sL~~La~~~lgi~~~~~~H~----------------Al~DA~at~~L~~~l 234 (276)
.-++|+..+.+.+... ..+++|+++|..+||.... ..+. .+.||..+++|+.++
T Consensus 263 ~GR~~lD~~~~~k~~~~~~l~sysL~~Va~~~Lg~~K~-d~~~~i~~~~~~~~~~l~~Y~~~D~~l~~~L~~kl 335 (388)
T 1noy_A 263 DGVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKL-PYDGPINKLRETNHQRYISYNIIDVESVQAIDKIR 335 (388)
T ss_dssp TTSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCC-CCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCeEEeEHHHHHhhcCcCcccCCCHHHHHHHHhCCCCC-CcHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0145666655543223 6799999999889987543 2112 478999999999885
No 35
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.0019 Score=66.07 Aligned_cols=147 Identities=14% Similarity=0.097 Sum_probs=87.2
Q ss_pred CCCCcEEEEEEeccCCC---C----CCeeEEEEEEEEeCCCcEEEE-Ee-ecCCcccccccccccCCCHHHhcCCCCHHH
Q 023843 77 FSLTDVVAMDCEMVGIS---Q----GNKSALGRVSLVNKWGNLIYD-EF-VRPLERVVDFRTRISGIRPRDLRKAKDFPT 147 (276)
Q Consensus 77 ~~~~~~VaiD~EttG~~---~----~~iiei~~v~v~~~~g~ii~~-~~-v~P~~~i~~~~~~i~GIt~~~l~~a~~~~e 147 (276)
.++-++++||+||++.+ | +.|++|+.+.-.++....+.. .| +.+..+ +....+....+..+
T Consensus 246 ~PplrilSfDIEt~~~~g~fP~~~~D~Ii~IS~~v~~~g~~~~~~r~~f~l~~~~~----------~~~~~V~~~~sE~e 315 (919)
T 3iay_A 246 TAPLRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIRNVFTLNTCSP----------ITGSMIFSHATEEE 315 (919)
T ss_dssp CCCCEEEEEEEEECCCTTSCCCTTTCCEEEEEEEEEETTCSSCSEEEEEEESCCCC----------BTTBEEEEESSHHH
T ss_pred CCCceEEEEEEEECCCCCCCCCCCCCcEEEEEEEEecCCCcccceeEEEEecCCCC----------CCCCeEEECCCHHH
Confidence 35668999999998532 2 356666633322222121111 11 121111 11123444567788
Q ss_pred HHHHHHHHhc---CCeEEEEch-hhHHHHhc-------ccCC----C------------------------------Cce
Q 023843 148 VQKKVAELIE---GRILVGHAL-HNDLKALL-------LTHS----K------------------------------KDL 182 (276)
Q Consensus 148 v~~~l~~~l~---~~~lVgHn~-~~D~~~L~-------~~~~----~------------------------------~~~ 182 (276)
.+..|.+++. -.+|+|||+ .||+.+|. +... + .-+
T Consensus 316 LL~~F~~~i~~~DPDIIvGyNi~~FDlpyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~~~~~~~i~GR~~ 395 (919)
T 3iay_A 316 MLSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDGRLQ 395 (919)
T ss_dssp HHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBCCTTCEE
T ss_pred HHHHHHHHHHHhCCCEEEecCCccCCHHHHHHHHHHcCCCchhhhccccCccccccccccccccccccccceeEEcCeEE
Confidence 9999999885 578999999 89999884 1110 0 013
Q ss_pred eehhhhchhhhCCCCCccHHHHHHHHhCCcCCCCCC-------------------ChHHHHHHHHHHHHHh
Q 023843 183 RDTSEYQPFLNRNGRSKALRHLAAEILAVEIQNGEH-------------------CPIDDARAAMLLYMKN 234 (276)
Q Consensus 183 ~Dt~~~~~~~~~~~~~~sL~~La~~~lgi~~~~~~H-------------------~Al~DA~at~~L~~~l 234 (276)
+|+..+.... ....+++|+++|..+||.....-.| ..+.||..+++|+.++
T Consensus 396 lDl~~~~k~~-~~l~sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~~~~~~L~~Y~~~Da~l~~~L~~kl 465 (919)
T 3iay_A 396 LDLLQFIQRE-YKLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKL 465 (919)
T ss_dssp EEHHHHHHHH-CCCSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEhHHHHHhh-cCCCCCCHHHHHHHhcccCCCCCCHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555544332 2678999999999999855431111 1367999999999887
No 36
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=97.34 E-value=0.0026 Score=66.71 Aligned_cols=94 Identities=15% Similarity=0.014 Sum_probs=62.8
Q ss_pred cCCCCHHHHHHHHHHHhc---CCeEEEEch-hhHHHHhc--------ccCCC----------------------------
Q 023843 140 RKAKDFPTVQKKVAELIE---GRILVGHAL-HNDLKALL--------LTHSK---------------------------- 179 (276)
Q Consensus 140 ~~a~~~~ev~~~l~~~l~---~~~lVgHn~-~~D~~~L~--------~~~~~---------------------------- 179 (276)
....+..+.+..|.+++. -.+|||||+ .||+.+|. +..+.
T Consensus 396 ~~~~sE~eLL~~F~~~I~~~DPDIIvGyNi~~FDlpyL~~Ra~~~~gl~l~~~GRl~r~~~~k~~~~~~~~f~~~~~~~i 475 (1193)
T 2gv9_A 396 LEFDSEFEMLLAFMTLVKQYGPEFVTGYNIINFDWPFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIGQSHFQKRSKIKV 475 (1193)
T ss_dssp EEESSHHHHHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCTTTSSBSSSCCEEECC----------CEEE
T ss_pred EecCCHHHHHHHHHHHHHhcCCCEEEEcCCcCccHHHHHHHHHHHcCCChHHhcccccCCcceeeccccccccccceEEE
Confidence 334567888999988885 568999999 99998884 11110
Q ss_pred --CceeehhhhchhhhCCCCCccHHHHHHHHhCCcCCCCCC-------------------ChHHHHHHHHHHHHHh
Q 023843 180 --KDLRDTSEYQPFLNRNGRSKALRHLAAEILAVEIQNGEH-------------------CPIDDARAAMLLYMKN 234 (276)
Q Consensus 180 --~~~~Dt~~~~~~~~~~~~~~sL~~La~~~lgi~~~~~~H-------------------~Al~DA~at~~L~~~l 234 (276)
..++|+..+..... ...+++|+++|..+||.....-.+ ..+.||..+++||.++
T Consensus 476 ~GRv~lDl~~~~~~~~-kl~sYsL~~Va~~~Lg~~K~dv~~~eI~~~~~~~~~~r~~L~~Ycl~Da~lt~~L~~kl 550 (1193)
T 2gv9_A 476 NGMVNIDMYGIITDKI-KLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFKF 550 (1193)
T ss_dssp TTBEEEEHHHHHTTTC-CCSCCCHHHHHHHTSCCCCCCCCTTTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCeEeehHHHHHHHHh-ccCCCCHHHHHHHHhccCCCCCCHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 01345554332222 567899999998889865442111 1357899999998876
No 37
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=97.25 E-value=0.0061 Score=61.93 Aligned_cols=147 Identities=12% Similarity=0.032 Sum_probs=83.9
Q ss_pred CCCCcEEEEEEec-cCCC---C------CCeeEEEEEEEEeCCCcEEEEEeecCCcccccccccccCCCHHHhcCCCCHH
Q 023843 77 FSLTDVVAMDCEM-VGIS---Q------GNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRKAKDFP 146 (276)
Q Consensus 77 ~~~~~~VaiD~Et-tG~~---~------~~iiei~~v~v~~~~g~ii~~~~v~P~~~i~~~~~~i~GIt~~~l~~a~~~~ 146 (276)
.++-++++||+|| +|.. | +.|++|+ +++.+|...+ .++++... +.....+.| ..+....+..
T Consensus 187 ~p~l~ilsfDIEt~s~~~g~fP~~~~~~d~Ii~Is---~~~~~g~~~~-~~~~~~~~-~~~~~~i~~---~~v~~~~~E~ 258 (847)
T 1s5j_A 187 IPKIKRVAIDIEVYTPVKGRIPDSQKAEFPIISIA---LAGSDGLKKV-LVLNRNDV-NEGSVKLDG---ISVERFNTEY 258 (847)
T ss_dssp CCCCCEEEEEEEECCSSSSCCCCTTTCCSCEEEEE---EEETTSCEEE-EEECSSCC-CCCCEEETT---EEEEEESSHH
T ss_pred CCCceEEEEEEEeCcCCCCCCCCccccCCcEEEEE---EEccCCCcEE-EEEeCCcc-cccccCCCC---CeEEEeCCHH
Confidence 3456899999999 6431 2 2455555 4455554321 12333210 000011111 1233345778
Q ss_pred HHHHHHHHHhc-CCeEEEEch-hhHHHHhc-----ccCC-----------------CCceeehhhhchh-------hhCC
Q 023843 147 TVQKKVAELIE-GRILVGHAL-HNDLKALL-----LTHS-----------------KKDLRDTSEYQPF-------LNRN 195 (276)
Q Consensus 147 ev~~~l~~~l~-~~~lVgHn~-~~D~~~L~-----~~~~-----------------~~~~~Dt~~~~~~-------~~~~ 195 (276)
+.+..|.+++. ..+|||||+ .||+.+|. +... ....+|+..+... +...
T Consensus 259 ~LL~~f~~~i~~~diivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f~~k 338 (847)
T 1s5j_A 259 ELLGRFFDILLEYPIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEGK 338 (847)
T ss_dssp HHHHHHHHHHTTCSEEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTSTTC
T ss_pred HHHHHHHHHhccCCEEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhccccc
Confidence 99999999996 447999999 89999985 1110 1113455433211 1112
Q ss_pred CCCccHHHHHHHHhCCcCCCC------------CCChHHHHHHHHHHH
Q 023843 196 GRSKALRHLAAEILAVEIQNG------------EHCPIDDARAAMLLY 231 (276)
Q Consensus 196 ~~~~sL~~La~~~lgi~~~~~------------~H~Al~DA~at~~L~ 231 (276)
..+++|+.+|..+||.....- .+..+.||..+..|+
T Consensus 339 l~sysL~~Va~~~Lg~~K~dv~~~i~~~~~~~l~~Ycl~Da~lt~~L~ 386 (847)
T 1s5j_A 339 YNEYNLDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQLT 386 (847)
T ss_dssp CSSCSHHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHhCCCCcchhHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 368999999988998653311 012477999999985
No 38
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=97.19 E-value=0.0068 Score=61.75 Aligned_cols=160 Identities=14% Similarity=0.117 Sum_probs=99.8
Q ss_pred CCCCCCCcEEEEEEeccCCC--CC---CeeEEEEEEEEeCCCcEE--EEEeecCCccccccccc---------ccCCCHH
Q 023843 74 NDDFSLTDVVAMDCEMVGIS--QG---NKSALGRVSLVNKWGNLI--YDEFVRPLERVVDFRTR---------ISGIRPR 137 (276)
Q Consensus 74 ~~~~~~~~~VaiD~EttG~~--~~---~iiei~~v~v~~~~g~ii--~~~~v~P~~~i~~~~~~---------i~GIt~~ 137 (276)
.-+...-+.++||+|++.-+ |+ ...+|.+|++.+..+... |+.+..|.....++... -..+..+
T Consensus 102 ~~~~~~ir~~~~DIEv~~~~~fPd~~~~~~~Ii~It~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (903)
T 3qex_A 102 KYDHTKIRVANFDIEVTSPDGFPEPSQAKHPIDAITHYDSIDDRFYVFDLLNSPYGNVEEWSIEIAAKLQEQGGDEVPSE 181 (903)
T ss_dssp CCCGGGSCEEEEEEECCCTTSSCCTTTCCSCCCEEEEEETTTTEEEEEEECEETTEECCCCCHHHHHSCGGGTCCCCCHH
T ss_pred ccCcccccEEEEeEEeCCCCCCCCcccCCCCEEEEEEEeCCCCEEEEEEeeccccccccccccccccccccccccccccc
Confidence 33455678999999987633 32 125677788888777654 33344343333333221 1223333
Q ss_pred HhcC-----CCCHHHHHHHHHHHhc---CCeEEEEch-hhHHHHhc-----c-c---------CCC--------------
Q 023843 138 DLRK-----AKDFPTVQKKVAELIE---GRILVGHAL-HNDLKALL-----L-T---------HSK-------------- 179 (276)
Q Consensus 138 ~l~~-----a~~~~ev~~~l~~~l~---~~~lVgHn~-~~D~~~L~-----~-~---------~~~-------------- 179 (276)
.+.+ ..+..+.+..|.+++. ..+|+|||+ .||+.+|. + . ..+
T Consensus 182 ~~~~v~v~~f~sE~eLL~~F~~~I~~~DPDIItGyN~~~FDlPYL~~RA~~l~gi~~~~~ls~~gR~~~~~~~~~~G~~~ 261 (903)
T 3qex_A 182 IIDKIIYMPFDNEKELLMEYLNFWQQKTPVILTGWNVESFAIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMYGSRE 261 (903)
T ss_dssp HHTTEEEEEESSHHHHHHHHHHHHHHTCCSEEECSSTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCEEEEEEEETTEEEE
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHHHhCCCEEEecCCccCCHHHHHHHHHHHcCCcccccccccccccccchhhhcCCce
Confidence 3322 3467889999999885 578899999 89998874 1 1 000
Q ss_pred ------Cceeehhhhchhh-hCCCCCccHHHHHHHHhCCcCCCCCCC----------------hHHHHHHHHHHHHHh
Q 023843 180 ------KDLRDTSEYQPFL-NRNGRSKALRHLAAEILAVEIQNGEHC----------------PIDDARAAMLLYMKN 234 (276)
Q Consensus 180 ------~~~~Dt~~~~~~~-~~~~~~~sL~~La~~~lgi~~~~~~H~----------------Al~DA~at~~L~~~l 234 (276)
.-++|+..+.+.. .....+++|+.+|..+||..... -|. .+.||..+++||.++
T Consensus 262 ~~~i~GRv~lDl~~~~k~~~~~~l~SYsLd~VA~~lLg~~K~d-~~~~I~~~~~~d~~~L~~Ycl~Da~Lt~~L~~Kl 338 (903)
T 3qex_A 262 IITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKLK-YDGPISKLRESNHQRYISYNIIAVYRVLQIDAKR 338 (903)
T ss_dssp EEEETTCEECCHHHHHHHHSCCCCSCCCHHHHHHHHHCCCCCC-CSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEeCeEEeeHHHHHHHhCccCcCCCCHHHHHHHHcCCCccc-cHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1145555554432 22467899999999999876542 121 378999999999873
No 39
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=97.10 E-value=0.0089 Score=60.17 Aligned_cols=146 Identities=18% Similarity=0.192 Sum_probs=85.5
Q ss_pred CCCCCCcEEEEEEeccCCCCCCeeEEEEEEEEeCCCcEEEEEeecCCcccccccccccCCCHHHhcCCCCHHHHHHHHHH
Q 023843 75 DDFSLTDVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAE 154 (276)
Q Consensus 75 ~~~~~~~~VaiD~EttG~~~~~iiei~~v~v~~~~g~ii~~~~v~P~~~i~~~~~~i~GIt~~~l~~a~~~~ev~~~l~~ 154 (276)
+..++-++++||+|+.+ .|.++.|| +.+.....+|. +.+... ... +..-.+....+..+.+..|.+
T Consensus 148 ~~~p~lrilsfDIE~~~--~g~i~~I~---~~~~~~~~v~~--l~~~~~----~~~---~~~~~V~~f~~E~~lL~~f~~ 213 (786)
T 3k59_A 148 DYRPPLKWVSIDIETTR--HGELYCIG---LEGCGQRIVYM--LGPENG----DAS---SLDFELEYVASRPQLLEKLNA 213 (786)
T ss_dssp SCCCCCCEEEEEEEECT--TSCEEEEE---EEETTEEEEEE--ESSCCS----CCT---TCSSEEEEESSHHHHHHHHHH
T ss_pred CCCCCCeEEEEEEEEcC--CCCEEEEE---ecCCCCCeEEE--EecCCC----CCC---CCCceEEEeCCHHHHHHHHHH
Confidence 34567789999999985 45666655 33322222221 111110 000 111122333466788888888
Q ss_pred Hhc---CCeEEEEch-hhHHHHhc-------ccC--CC-----------------------CceeehhhhchhhhCCCCC
Q 023843 155 LIE---GRILVGHAL-HNDLKALL-------LTH--SK-----------------------KDLRDTSEYQPFLNRNGRS 198 (276)
Q Consensus 155 ~l~---~~~lVgHn~-~~D~~~L~-------~~~--~~-----------------------~~~~Dt~~~~~~~~~~~~~ 198 (276)
++. -.+++|||+ .||+.+|. +.. .+ .-.+|+..+.+.......+
T Consensus 214 ~i~~~dPDii~g~N~~~FD~pyL~~Ra~~~~i~~~lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~lk~~~~~l~S 293 (786)
T 3k59_A 214 WFANYDPDVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSS 293 (786)
T ss_dssp HHHHHCCSEEEESSTTTTHHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHHHHTTCCCSC
T ss_pred HHHHcCCCEEEecCCccCcHHHHHHHHHHhCCCceeccCCCcccccccccCCCceeEEEcCEEEEEhHHHHHhccCCCCC
Confidence 885 458999999 89999884 110 00 1134544433321225679
Q ss_pred ccHHHHHHHHhCCcCCC-CCC-------------------ChHHHHHHHHHHHHHh
Q 023843 199 KALRHLAAEILAVEIQN-GEH-------------------CPIDDARAAMLLYMKN 234 (276)
Q Consensus 199 ~sL~~La~~~lgi~~~~-~~H-------------------~Al~DA~at~~L~~~l 234 (276)
++|+++|..+||..... ..| -.+.||..+++||.++
T Consensus 294 ysL~~Va~~~Lg~~K~~~~~~~~~~eI~~~~~~~~~~L~~Y~l~Da~L~~~L~~kl 349 (786)
T 3k59_A 294 FSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKNCELVTQIFHKT 349 (786)
T ss_dssp CSHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCcccCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998889865331 111 1368999999999885
No 40
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=96.93 E-value=0.0012 Score=63.24 Aligned_cols=82 Identities=18% Similarity=0.136 Sum_probs=57.6
Q ss_pred cCCeEEEEchhhHHHHhc-----------------ccCCCCceeehhhhchh--hhCCCCCccHHHHHHHHhCCc-----
Q 023843 157 EGRILVGHALHNDLKALL-----------------LTHSKKDLRDTSEYQPF--LNRNGRSKALRHLAAEILAVE----- 212 (276)
Q Consensus 157 ~~~~lVgHn~~~D~~~L~-----------------~~~~~~~~~Dt~~~~~~--~~~~~~~~sL~~La~~~lgi~----- 212 (276)
.+.++||||.-+|+-+|- +......++||..++.. +.......+|..|+ +.+...
T Consensus 275 ~~kpiVgHN~l~Dl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~~L~~l~-~~l~~~~~~~p 353 (507)
T 3d45_A 275 SGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTKLMASTQPFKDIINNTSLAELE-KRLKETPFDPP 353 (507)
T ss_dssp HCCEEEESSCHHHHHHHHHHHTCSCCSSHHHHHHHHHHHCSCEEEHHHHTTSTTHHHHCCCCCHHHHH-HHTTSTTCCCC
T ss_pred CCCeEEEechHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCceeEhHhhhhcCccccccCCCCHHHHH-HHHhccCCCCC
Confidence 389999999999997774 11111248999987664 22123467999998 666521
Q ss_pred C-------------CCCCCChHHHHHHHHHHHHHhHHHHH
Q 023843 213 I-------------QNGEHCPIDDARAAMLLYMKNRKQWE 239 (276)
Q Consensus 213 ~-------------~~~~H~Al~DA~at~~L~~~l~~~~e 239 (276)
. .+..|.|..||+.|..+|.++...+.
T Consensus 354 ~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~~l~ 393 (507)
T 3d45_A 354 KVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG 393 (507)
T ss_dssp CEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred eEEecccccccccCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 1 22369999999999999999976653
No 41
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=96.91 E-value=0.0028 Score=59.52 Aligned_cols=98 Identities=20% Similarity=0.195 Sum_probs=64.5
Q ss_pred HhcCCCCHHHHHHHHHHHhcCCeEEEEchhhHHHHhc-----------------ccCCCCceeehhhhchhhh--CCCCC
Q 023843 138 DLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALL-----------------LTHSKKDLRDTSEYQPFLN--RNGRS 198 (276)
Q Consensus 138 ~l~~a~~~~ev~~~l~~~l~~~~lVgHn~~~D~~~L~-----------------~~~~~~~~~Dt~~~~~~~~--~~~~~ 198 (276)
.+..+.-|..+++.|.. .+.+|||||.-+|+-+|- +......++||..++.... ....+
T Consensus 263 ~l~~~~Gfr~V~~~L~~--s~KpiVGHN~llDl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~ 340 (430)
T 2a1r_A 263 ELNDAVGFSRVIHAIAN--SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDIINN 340 (430)
T ss_dssp HHHTTSBTHHHHHHHHH--HCCEEEESSCHHHHHHHHHHHTCCCCSSHHHHHHHHHHHCSSEEEHHHHHTSTTTTTTCSC
T ss_pred HHHhhhhHHHHHHHHHh--CCCceEechhHHHHHHHHHHhccCCCCCHHHHHHHHHHHCCceeehHHhhhccchhhccCC
Confidence 34455556666555433 489999999999997663 1111124899987764321 12346
Q ss_pred ccHHHHHHHHhCCc-C-----------------CCCCCChHHHHHHHHHHHHHhHHHH
Q 023843 199 KALRHLAAEILAVE-I-----------------QNGEHCPIDDARAAMLLYMKNRKQW 238 (276)
Q Consensus 199 ~sL~~La~~~lgi~-~-----------------~~~~H~Al~DA~at~~L~~~l~~~~ 238 (276)
.+|..|. +.+... . .+..|.|..||..|..+|.++...+
T Consensus 341 ~sL~~l~-~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~l 397 (430)
T 2a1r_A 341 TSLAELE-KRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYL 397 (430)
T ss_dssp CSHHHHH-HHTTSTTCCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHH-HHHHhCCCCCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 7899987 555321 1 1235999999999999999997654
No 42
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=95.54 E-value=0.022 Score=57.66 Aligned_cols=79 Identities=19% Similarity=0.098 Sum_probs=59.1
Q ss_pred HHHHHHhcCCeEEEEchhhHHHHhc---ccCCCCceeehhhhchhhhCCCCCccHHHHHHHHhCCcCCCCCCChHHHHHH
Q 023843 150 KKVAELIEGRILVGHALHNDLKALL---LTHSKKDLRDTSEYQPFLNRNGRSKALRHLAAEILAVEIQNGEHCPIDDARA 226 (276)
Q Consensus 150 ~~l~~~l~~~~lVgHn~~~D~~~L~---~~~~~~~~~Dt~~~~~~~~~~~~~~sL~~La~~~lgi~~~~~~H~Al~DA~a 226 (276)
..|..|+.+.-+ |++||+.+|. +... .+.||+..++++.+. .++|++|+.++ |.... .. .+ .||.+
T Consensus 340 ~~Lk~lLed~~i---n~K~d~~~L~~~Gi~~~--~~~Dt~laayLl~p~--~~~l~~l~~~~-gk~~~-~~-ya-~da~~ 408 (832)
T 1bgx_T 340 KALRDLKEARGL---LAKDLSVLALREGLGLP--PGDDPMLLAYLLDPS--NTTPEGVARRY-GGEWT-EE-AG-ERAAL 408 (832)
T ss_dssp HHHHHCSSBCBT---THHHHHHHHHHHTCCCC--BCCCHHHHHHHHCTT--CCSTTHHHHHH-SCCCC-SS-HH-HHHHH
T ss_pred HHHHHHHhCCCC---ChHHHHHHHHHcCCccC--cccCHHHHHHHcCCC--CCCHHHHHHHh-CCCch-HH-HH-HHHHH
Confidence 347788875433 9999999995 4443 368999999999976 88999999655 54211 11 23 79999
Q ss_pred HHHHHHHhHHHHH
Q 023843 227 AMLLYMKNRKQWE 239 (276)
Q Consensus 227 t~~L~~~l~~~~e 239 (276)
+.+|+..+..+++
T Consensus 409 ~~~l~~~l~~~L~ 421 (832)
T 1bgx_T 409 SERLFANLWGRLE 421 (832)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987765
No 43
>3q7c_A Nucleoprotein; deddh exonuclease, 3' exonuclease, hydrolase; 1.50A {Lassa virus} PDB: 3q7b_A 4fvu_A
Probab=93.98 E-value=0.53 Score=39.40 Aligned_cols=144 Identities=17% Similarity=0.196 Sum_probs=86.0
Q ss_pred CCCCCcEEEEEEeccCCCCCCeeEEEEEEEEeCCCcEEEEEeecCCc--ccccccccccCCCHHHhcCCCCHHHHHHHHH
Q 023843 76 DFSLTDVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLE--RVVDFRTRISGIRPRDLRKAKDFPTVQKKVA 153 (276)
Q Consensus 76 ~~~~~~~VaiD~EttG~~~~~iiei~~v~v~~~~g~ii~~~~v~P~~--~i~~~~~~i~GIt~~~l~~a~~~~ev~~~l~ 153 (276)
.+.+..-.|||+| |.. +.-+||| |......-.+..|-.|.. .+.+.+..-|||--.+|.++.+ -+...+.
T Consensus 53 ~LdP~~ttWiDIE--G~p-~DPVElA---iyQP~sg~YIHcyR~P~D~K~FK~~SKySHGillkDl~~aqP--GL~S~vi 124 (243)
T 3q7c_A 53 QLDPNAKTWMDIE--GRP-EDPVEIA---LYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQP--GLTSAVI 124 (243)
T ss_dssp TSCTTSCCEEEEE--SCT-TSCSEEE---EEETTTTEEEEEECCCSCHHHHHHHHHHTTCBCGGGGTTBCT--THHHHHH
T ss_pred hcCCCCCeEEecC--CCC-CCCeEEE---EeccCCCcEEEEecCCcchhhhcccCccccceehhhhhhcCC--chHHHHH
Confidence 4556778899999 553 3336777 333333334556677876 6667778889999999988865 4556677
Q ss_pred HHhcCCeEEEEchhhHHHHhcccCCCC--ceeehhhhchhhhC--CCCCccHHHHHHHHhCCcCC---------CCCCCh
Q 023843 154 ELIEGRILVGHALHNDLKALLLTHSKK--DLRDTSEYQPFLNR--NGRSKALRHLAAEILAVEIQ---------NGEHCP 220 (276)
Q Consensus 154 ~~l~~~~lVgHn~~~D~~~L~~~~~~~--~~~Dt~~~~~~~~~--~~~~~sL~~La~~~lgi~~~---------~~~H~A 220 (276)
..|....++---..-|++-|--.+.+. .++|+..-....+. ..---....||..+-|+-+. ...|+|
T Consensus 125 ~~LP~nMVlT~QGsDDIrkLld~hGRrDiKlIDV~lt~eqaR~FEd~VWd~f~~LC~~H~GvVv~KKKkg~~~s~~PHCA 204 (243)
T 3q7c_A 125 DALPRNMVITCQGSDDIRKLLESQGRKDIKLIDIALSKTDSRKYENAVWDQYKDLCHMHTGVVVEKKKRGGKEEITPHCA 204 (243)
T ss_dssp HHSCTTCEEEESSHHHHHHHHHHTTCTTSEEEECCCCHHHHTTTHHHHHHHHGGGCCCBCSCEECCCSSSSCCEECCCCH
T ss_pred HhCCcCcEEEeeChHHHHHHHHhcCCccceEEEeecCHHHHHHHHHHHHHHHHHHHHhcCceEEeccccCCCCCCCchHH
Confidence 788755555555566766665344433 36776654333221 00011233345444453322 246999
Q ss_pred HHHHHHH
Q 023843 221 IDDARAA 227 (276)
Q Consensus 221 l~DA~at 227 (276)
+-|+..-
T Consensus 205 LLDCIMF 211 (243)
T 3q7c_A 205 LMDCIMF 211 (243)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998753
No 44
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=93.91 E-value=0.031 Score=57.29 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=26.3
Q ss_pred CCeEEEEchhhHHHHhc----ccCCCCceeehhhhch
Q 023843 158 GRILVGHALHNDLKALL----LTHSKKDLRDTSEYQP 190 (276)
Q Consensus 158 ~~~lVgHn~~~D~~~L~----~~~~~~~~~Dt~~~~~ 190 (276)
.+++||||+.||...+. +...+.+++|||.+.-
T Consensus 194 ~rlIVGHNVsyDRARI~EeY~l~~sk~rFlDTMSLHv 230 (1172)
T 3ikm_A 194 EQLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSMHM 230 (1172)
T ss_dssp CCCCBCBCSSSSTTGGGTSSCSSCCCCCCCBTTHHHH
T ss_pred ccEEEeCCcchhHHHHHHHHhcccCCceeeechhhhh
Confidence 68999999999998887 4445567899997543
No 45
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT facility, SSPF, nuclear protein; 1.79A {Lassa virus josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Probab=90.25 E-value=2 Score=39.84 Aligned_cols=144 Identities=17% Similarity=0.196 Sum_probs=86.0
Q ss_pred CCCCCcEEEEEEeccCCCCCCeeEEEEEEEEeCCCcEEEEEeecCCc--ccccccccccCCCHHHhcCCCCHHHHHHHHH
Q 023843 76 DFSLTDVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLE--RVVDFRTRISGIRPRDLRKAKDFPTVQKKVA 153 (276)
Q Consensus 76 ~~~~~~~VaiD~EttG~~~~~iiei~~v~v~~~~g~ii~~~~v~P~~--~i~~~~~~i~GIt~~~l~~a~~~~ev~~~l~ 153 (276)
...+..-.+||+| |.. +.-+|+| |......-.+..|-.|.. .+.+.+..-|||--.|+.++.+ -....+.
T Consensus 387 ~ldp~~ttWiDIE--G~p-~DPVE~A---iyQP~~g~YiHcyR~P~D~K~FK~~SkysHGillkDl~~aqP--GL~S~vi 458 (577)
T 3mwp_A 387 QLDPNAKTWMDIE--GRP-EDPVEIA---LYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQP--GLTSAVI 458 (577)
T ss_dssp GSCTTSCEEEEEE--SCT-TSCSEEE---EEETTTTEEEEEECCCSCHHHHHHHHHHTTCBCGGGGGGBCT--THHHHHH
T ss_pred hCCCCCCeEEecC--CCC-CCCeEEE---EeccCCCcEEEEecCCcchhhhcccCccccceehhhhhhcCC--chHHHHH
Confidence 4567788999999 553 3336777 333333344556677876 6667778889999999988765 4556677
Q ss_pred HHhcCCeEEEEchhhHHHHhcccCCCC--ceeehhhhchhhhC--CCCCccHHHHHHHHhCCcCC---------CCCCCh
Q 023843 154 ELIEGRILVGHALHNDLKALLLTHSKK--DLRDTSEYQPFLNR--NGRSKALRHLAAEILAVEIQ---------NGEHCP 220 (276)
Q Consensus 154 ~~l~~~~lVgHn~~~D~~~L~~~~~~~--~~~Dt~~~~~~~~~--~~~~~sL~~La~~~lgi~~~---------~~~H~A 220 (276)
..|....++---..-|++-|--.|.+. .++|+..-....+. ..---....||..+-|+-+. ...|+|
T Consensus 459 ~~LP~~mV~T~QGsdDI~kLld~hGR~DiK~iDV~lt~eqaR~fEd~VW~~~~~LC~~H~GiVv~kKKkg~~~~~~pHCA 538 (577)
T 3mwp_A 459 DALPRNMVITCQGSDDIRKLLESQGRKDIKLIDIALSKTDSRKYENAVWDQYKDLCHMHTGVVVEKKKRGGKEEITPHCA 538 (577)
T ss_dssp HHSCTTCEEEESSHHHHHHHHHHTTCTTCEEEECCCCHHHHTTTHHHHHHHHGGGCCCBCSCEEECC-----EEECCCCH
T ss_pred HhCCcCcEEEeeChHHHHHHHHhcCCccceEEEeecCHHHHHHHHHHHHHHHHHHHHhcCceEEecccCCCCCCCCchHH
Confidence 788755555555566766665444433 36776653332220 00011233445444453322 247999
Q ss_pred HHHHHHH
Q 023843 221 IDDARAA 227 (276)
Q Consensus 221 l~DA~at 227 (276)
+-|+..-
T Consensus 539 LlDCiMF 545 (577)
T 3mwp_A 539 LMDCIMF 545 (577)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998753
No 46
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=85.76 E-value=1.5 Score=42.49 Aligned_cols=17 Identities=18% Similarity=-0.042 Sum_probs=15.3
Q ss_pred CCeEEEEchhhHHHHhc
Q 023843 158 GRILVGHALHNDLKALL 174 (276)
Q Consensus 158 ~~~lVgHn~~~D~~~L~ 174 (276)
+.++++||+.||..+|.
T Consensus 55 ~~~i~~hNl~FD~~~l~ 71 (575)
T 2py5_A 55 QADLYFHNLKFAGAFII 71 (575)
T ss_dssp CCEEEETTHHHHHHHHH
T ss_pred CCEEEEEChhhhHHHHH
Confidence 67889999999999885
No 47
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=27.26 E-value=26 Score=32.32 Aligned_cols=39 Identities=26% Similarity=0.270 Sum_probs=27.3
Q ss_pred cEEEEEEeccCCC--CC-------------------------CeeEEEEEEEEeCCCcE------EEEEeecC
Q 023843 81 DVVAMDCEMVGIS--QG-------------------------NKSALGRVSLVNKWGNL------IYDEFVRP 120 (276)
Q Consensus 81 ~~VaiD~EttG~~--~~-------------------------~iiei~~v~v~~~~g~i------i~~~~v~P 120 (276)
.||+||+|++|+. +. .++++| +++.+.+|+. .|+.++-|
T Consensus 23 ~fVAiD~Ef~Gi~~~~~~~~~~~~~~s~e~~Y~~lr~nv~~~~iiQlG-lt~f~~~~~~~~~~~~~fNF~~FP 94 (430)
T 2a1r_A 23 DFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFG-LCTFKYDYTDSKYITKSFNFYVFP 94 (430)
T ss_dssp SEEEEEEEESCSCSSSCC-----CCCCHHHHHHHHHHHTTTBCEEEEE-EEEEEEETTTTEEEEEEEEEEBCC
T ss_pred CEEEEeeeeccccCCCccccccccCCCHHHHHHHHHHHHhhcceeeEE-EEEEeecCCCCceeEEEEEEEecc
Confidence 5999999999995 11 367888 6666654431 18888765
No 48
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=24.01 E-value=32 Score=32.42 Aligned_cols=40 Identities=25% Similarity=0.238 Sum_probs=28.2
Q ss_pred cEEEEEEeccCCC--C-C------------------------CeeEEEEEEEEeCCCcE------EEEEeecCC
Q 023843 81 DVVAMDCEMVGIS--Q-G------------------------NKSALGRVSLVNKWGNL------IYDEFVRPL 121 (276)
Q Consensus 81 ~~VaiD~EttG~~--~-~------------------------~iiei~~v~v~~~~g~i------i~~~~v~P~ 121 (276)
.||+||+|++|+. + + .++++| +++.+.+|+. .|+.++-|.
T Consensus 25 ~fvaiD~Ef~Gi~~~~~~~~~~~~~~t~~~~Y~~~r~~v~~~~iiQlG-lt~f~~~~~~~~~~~~~fNf~~fp~ 97 (507)
T 3d45_A 25 DFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHSMDFLLFQFG-LCAFKYDHTDSKHVTKSFNFYVFPK 97 (507)
T ss_dssp SEEEEEEEESCSCC--------CBSCCHHHHHHHHHHHHTTBCEEEEE-EEEEEECSSSSCEEEEEEEEEBCCC
T ss_pred CEEEEeeeccCcCCCCCccccccccCCHHHHHHHHHHHHHhcccceEE-EEEEecCCCCCceeEEeEEEEecCc
Confidence 5999999999995 1 0 267888 6666655531 288888775
Done!