BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023845
         (276 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q88261|HN_SENDO Hemagglutinin-neuraminidase OS=Sendai virus (strain Ohita) GN=HN
           PE=3 SV=2
          Length = 575

 Score = 31.2 bits (69), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 9/88 (10%)

Query: 142 AIANAPKFPAPSFQATFERLTSGSESLQVSLTGSLRSKVDNQGANIMVALYESGLVTNCP 201
            IA    +    +  T E L + ++ ++ SLT  +R +V  + ANI     +S + T  P
Sbjct: 57  VIAARQGYSMERYSMTVEALNTSNKEVKESLTSLIRQEVITRAANI-----QSSVQTGIP 111

Query: 202 AGENKGRVLSNDYVVRKLEKLCTVKDIS 229
              NK    S D V+R +EK C  ++++
Sbjct: 112 VLLNKN---SRD-VIRLIEKSCNRQELT 135


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.133    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,639,685
Number of Sequences: 539616
Number of extensions: 4403945
Number of successful extensions: 11054
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 11052
Number of HSP's gapped (non-prelim): 7
length of query: 276
length of database: 191,569,459
effective HSP length: 116
effective length of query: 160
effective length of database: 128,974,003
effective search space: 20635840480
effective search space used: 20635840480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)