Query 023845
Match_columns 276
No_of_seqs 127 out of 305
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 07:03:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023845.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023845hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06764 DUF1223: Protein of u 100.0 8.8E-69 1.9E-73 476.5 13.6 200 45-259 1-202 (202)
2 COG5429 Uncharacterized secret 100.0 1.8E-65 4E-70 459.1 15.3 215 41-275 40-260 (261)
3 PF11551 Omp28: Outer membrane 99.6 5.3E-16 1.1E-20 136.4 7.0 162 107-275 9-181 (184)
4 TIGR00411 redox_disulf_1 small 98.9 1.1E-08 2.3E-13 76.1 9.0 80 44-146 1-81 (82)
5 cd03026 AhpF_NTD_C TRX-GRX-lik 98.6 1.9E-07 4E-12 73.0 7.9 72 39-134 9-80 (89)
6 cd02973 TRX_GRX_like Thioredox 98.6 3.5E-07 7.6E-12 66.1 8.0 66 44-133 1-66 (67)
7 PF13192 Thioredoxin_3: Thiore 98.2 1.3E-05 2.9E-10 60.2 8.7 72 45-143 2-75 (76)
8 PF00462 Glutaredoxin: Glutare 98.1 6.5E-06 1.4E-10 58.6 5.7 59 46-129 1-59 (60)
9 TIGR02194 GlrX_NrdH Glutaredox 98.1 9E-06 1.9E-10 60.2 6.3 70 46-141 1-70 (72)
10 PRK11200 grxA glutaredoxin 1; 98.1 1.5E-05 3.2E-10 60.8 7.4 80 45-145 2-81 (85)
11 TIGR02187 GlrX_arch Glutaredox 98.1 1.4E-05 3.1E-10 71.0 8.5 82 40-145 131-214 (215)
12 TIGR02183 GRXA Glutaredoxin, G 98.0 2.6E-05 5.6E-10 60.1 8.2 80 45-145 1-80 (86)
13 cd03418 GRX_GRXb_1_3_like Glut 98.0 1.8E-05 3.9E-10 58.1 6.9 61 46-130 2-62 (75)
14 TIGR03143 AhpF_homolog putativ 98.0 2E-05 4.4E-10 79.5 9.1 73 39-135 473-545 (555)
15 TIGR02196 GlrX_YruB Glutaredox 98.0 3.9E-05 8.6E-10 54.7 8.0 72 46-143 2-73 (74)
16 TIGR02181 GRX_bact Glutaredoxi 98.0 2E-05 4.4E-10 58.8 6.5 61 46-131 1-61 (79)
17 TIGR00412 redox_disulf_2 small 98.0 5.4E-05 1.2E-09 57.0 8.3 71 45-142 2-74 (76)
18 TIGR02189 GlrX-like_plant Glut 97.9 5.4E-05 1.2E-09 60.1 7.1 66 46-134 10-75 (99)
19 COG0695 GrxC Glutaredoxin and 97.9 6.2E-05 1.3E-09 57.7 7.2 71 46-140 3-74 (80)
20 cd03029 GRX_hybridPRX5 Glutare 97.8 0.00017 3.6E-09 53.0 7.9 24 46-69 3-26 (72)
21 TIGR02190 GlrX-dom Glutaredoxi 97.7 0.0002 4.3E-09 54.0 8.0 68 45-141 9-76 (79)
22 TIGR03140 AhpF alkyl hydropero 97.7 0.00015 3.4E-09 72.4 9.3 85 38-146 113-198 (515)
23 cd03419 GRX_GRXh_1_2_like Glut 97.7 0.00014 2.9E-09 54.0 6.3 74 46-144 2-75 (82)
24 PRK15317 alkyl hydroperoxide r 97.7 0.00019 4.2E-09 71.6 9.3 83 39-145 113-196 (517)
25 TIGR02180 GRX_euk Glutaredoxin 97.6 0.00024 5.3E-09 52.6 6.9 76 46-144 1-76 (84)
26 cd02066 GRX_family Glutaredoxi 97.6 0.00026 5.6E-09 50.0 6.3 61 46-131 2-62 (72)
27 PHA03050 glutaredoxin; Provisi 97.5 0.00021 4.5E-09 57.9 5.9 69 46-134 15-83 (108)
28 cd03027 GRX_DEP Glutaredoxin ( 97.5 0.00043 9.4E-09 51.0 6.4 60 46-130 3-62 (73)
29 cd02976 NrdH NrdH-redoxin (Nrd 97.4 0.00076 1.6E-08 47.9 7.2 70 46-141 2-71 (73)
30 PRK10638 glutaredoxin 3; Provi 97.4 0.00058 1.3E-08 51.8 6.5 61 46-131 4-64 (83)
31 PRK10329 glutaredoxin-like pro 97.3 0.0013 2.8E-08 50.4 7.4 74 45-145 2-75 (81)
32 PRK09381 trxA thioredoxin; Pro 97.2 0.0019 4.1E-08 50.6 8.0 82 41-146 21-107 (109)
33 PHA02125 thioredoxin-like prot 97.2 0.0012 2.7E-08 49.2 6.1 60 46-135 2-63 (75)
34 TIGR02200 GlrX_actino Glutared 97.1 0.0033 7.1E-08 45.6 7.7 24 46-69 2-25 (77)
35 cd03023 DsbA_Com1_like DsbA fa 96.8 0.0058 1.3E-07 49.5 7.7 30 42-71 5-34 (154)
36 cd02975 PfPDO_like_N Pyrococcu 96.8 0.013 2.8E-07 47.2 9.5 77 45-145 25-108 (113)
37 KOG0907 Thioredoxin [Posttrans 96.7 0.011 2.3E-07 47.9 8.3 81 43-145 22-104 (106)
38 PF13462 Thioredoxin_4: Thiore 96.7 0.0018 3.9E-08 53.5 4.0 100 43-145 13-162 (162)
39 cd02950 TxlA TRX-like protein 96.7 0.0079 1.7E-07 50.5 7.7 88 39-148 18-111 (142)
40 PRK10877 protein disulfide iso 96.6 0.016 3.5E-07 52.7 9.6 99 42-146 107-230 (232)
41 cd02985 TRX_CDSP32 TRX family, 96.6 0.027 5.8E-07 44.2 9.6 82 41-144 15-100 (103)
42 cd03012 TlpA_like_DipZ_like Tl 96.5 0.011 2.3E-07 47.7 6.9 65 40-116 22-86 (126)
43 TIGR02187 GlrX_arch Glutaredox 96.5 0.021 4.5E-07 50.8 9.3 83 42-146 19-110 (215)
44 TIGR00365 monothiol glutaredox 96.4 0.015 3.2E-07 45.9 7.0 57 52-134 25-81 (97)
45 cd02947 TRX_family TRX family; 96.3 0.031 6.6E-07 40.4 7.8 61 44-128 12-74 (93)
46 PRK10824 glutaredoxin-4; Provi 96.2 0.018 3.9E-07 47.5 6.8 57 52-134 28-84 (115)
47 PF05768 DUF836: Glutaredoxin- 96.1 0.023 4.9E-07 43.2 6.6 72 46-143 2-80 (81)
48 cd02952 TRP14_like Human TRX-r 96.1 0.012 2.7E-07 48.5 5.3 71 41-126 21-97 (119)
49 cd02949 TRX_NTR TRX domain, no 96.0 0.02 4.4E-07 44.1 6.0 67 41-130 12-80 (97)
50 cd03019 DsbA_DsbA DsbA family, 96.0 0.036 7.7E-07 46.5 7.8 31 41-71 14-44 (178)
51 cd02956 ybbN ybbN protein fami 95.9 0.027 5.9E-07 42.8 6.3 65 41-129 12-78 (96)
52 cd02951 SoxW SoxW family; SoxW 95.9 0.024 5.1E-07 45.6 6.2 94 42-146 15-118 (125)
53 cd03009 TryX_like_TryX_NRX Try 95.8 0.046 9.9E-07 44.1 7.4 88 40-132 17-113 (131)
54 PRK12759 bifunctional gluaredo 95.7 0.012 2.6E-07 57.9 4.6 25 45-69 3-27 (410)
55 PRK10954 periplasmic protein d 95.7 0.023 4.9E-07 50.3 6.0 41 43-87 39-82 (207)
56 cd03028 GRX_PICOT_like Glutare 95.7 0.046 1E-06 42.2 6.9 33 105-142 51-83 (90)
57 cd02972 DsbA_family DsbA famil 95.5 0.03 6.5E-07 41.2 5.0 77 46-127 1-91 (98)
58 PF13098 Thioredoxin_2: Thiore 95.4 0.044 9.5E-07 42.7 6.0 77 43-126 6-89 (112)
59 cd02969 PRX_like1 Peroxiredoxi 95.4 0.055 1.2E-06 45.9 6.8 101 40-149 24-154 (171)
60 cd02953 DsbDgamma DsbD gamma f 95.2 0.064 1.4E-06 41.5 6.3 67 39-125 9-78 (104)
61 cd02963 TRX_DnaJ TRX domain, D 95.1 0.15 3.2E-06 40.6 8.1 80 43-144 25-109 (111)
62 cd02957 Phd_like Phosducin (Ph 95.0 0.097 2.1E-06 41.6 6.7 63 42-130 25-89 (113)
63 cd03002 PDI_a_MPD1_like PDI fa 95.0 0.06 1.3E-06 41.6 5.4 63 41-125 18-80 (109)
64 cd02962 TMX2 TMX2 family; comp 94.9 0.039 8.5E-07 47.3 4.6 42 42-86 48-89 (152)
65 PF13905 Thioredoxin_8: Thiore 94.9 0.055 1.2E-06 41.0 4.9 42 44-86 3-44 (95)
66 cd03010 TlpA_like_DsbE TlpA-li 94.9 0.022 4.8E-07 45.6 2.8 30 41-71 25-54 (127)
67 cd02984 TRX_PICOT TRX domain, 94.8 0.17 3.6E-06 38.2 7.4 79 41-143 14-96 (97)
68 cd02955 SSP411 TRX domain, SSP 94.8 0.068 1.5E-06 44.3 5.5 74 35-125 9-86 (124)
69 PRK03147 thiol-disulfide oxido 94.7 0.15 3.2E-06 42.7 7.6 100 40-144 60-169 (173)
70 cd02989 Phd_like_TxnDC9 Phosdu 94.5 0.1 2.2E-06 42.0 5.8 64 42-130 23-88 (113)
71 cd02964 TryX_like_family Trypa 94.5 0.18 4E-06 40.9 7.4 44 42-86 18-61 (132)
72 cd03011 TlpA_like_ScsD_MtbDsbE 94.5 0.08 1.7E-06 41.8 5.1 36 42-83 21-56 (123)
73 cd03018 PRX_AhpE_like Peroxire 94.4 0.085 1.8E-06 43.1 5.3 57 42-115 29-85 (149)
74 PF00085 Thioredoxin: Thioredo 94.4 0.23 5E-06 37.3 7.3 81 41-145 17-102 (103)
75 PRK10996 thioredoxin 2; Provis 94.4 0.28 6E-06 40.8 8.4 81 41-145 52-137 (139)
76 PF08534 Redoxin: Redoxin; In 94.3 0.031 6.7E-07 45.7 2.4 46 39-86 26-71 (146)
77 KOG1752 Glutaredoxin and relat 94.3 0.16 3.4E-06 41.2 6.4 69 40-133 12-80 (104)
78 cd02993 PDI_a_APS_reductase PD 94.2 0.12 2.7E-06 40.7 5.6 43 41-86 21-63 (109)
79 TIGR01068 thioredoxin thioredo 94.2 0.31 6.7E-06 36.4 7.5 80 42-145 15-99 (101)
80 cd02954 DIM1 Dim1 family; Dim1 94.0 0.22 4.8E-06 41.0 6.9 66 44-130 16-81 (114)
81 cd02971 PRX_family Peroxiredox 94.0 0.11 2.4E-06 41.7 5.1 57 40-113 21-77 (140)
82 cd03020 DsbA_DsbC_DsbG DsbA fa 94.0 0.29 6.3E-06 42.7 8.0 91 42-140 77-194 (197)
83 cd03031 GRX_GRX_like Glutaredo 94.0 0.049 1.1E-06 46.7 3.0 23 46-68 2-30 (147)
84 cd02948 TRX_NDPK TRX domain, T 93.9 0.59 1.3E-05 36.4 9.0 79 44-145 19-101 (102)
85 cd03003 PDI_a_ERdj5_N PDIa fam 93.9 0.19 4E-06 38.7 6.0 63 42-128 19-83 (101)
86 cd02966 TlpA_like_family TlpA- 93.9 0.24 5.3E-06 37.0 6.5 58 41-114 19-76 (116)
87 TIGR00385 dsbE periplasmic pro 93.8 0.11 2.4E-06 44.5 4.9 96 41-146 63-170 (173)
88 cd03004 PDI_a_ERdj5_C PDIa fam 93.8 0.24 5.1E-06 38.2 6.4 61 41-125 19-79 (104)
89 PRK00293 dipZ thiol:disulfide 93.7 0.27 5.8E-06 50.4 8.3 85 41-146 474-569 (571)
90 PRK15412 thiol:disulfide inter 93.6 0.088 1.9E-06 45.7 4.2 97 41-147 68-176 (185)
91 cd02967 mauD Methylamine utili 93.6 0.17 3.7E-06 39.4 5.3 30 41-71 21-50 (114)
92 cd01659 TRX_superfamily Thiore 93.5 0.29 6.4E-06 31.6 5.7 62 47-129 2-63 (69)
93 TIGR01126 pdi_dom protein disu 93.5 0.45 9.8E-06 35.7 7.4 83 42-145 13-100 (102)
94 cd02960 AGR Anterior Gradient 93.3 0.34 7.3E-06 40.8 6.9 44 36-86 18-67 (130)
95 PF13899 Thioredoxin_7: Thiore 93.0 0.098 2.1E-06 39.3 3.0 48 35-86 11-61 (82)
96 TIGR02661 MauD methylamine deh 92.8 0.46 9.9E-06 41.5 7.3 94 41-145 74-177 (189)
97 PTZ00051 thioredoxin; Provisio 92.7 0.46 1E-05 35.9 6.5 59 44-126 20-78 (98)
98 cd02961 PDI_a_family Protein D 92.6 0.35 7.5E-06 35.6 5.5 61 44-125 17-77 (101)
99 KOG0908 Thioredoxin-like prote 92.5 0.52 1.1E-05 44.3 7.5 85 41-149 20-108 (288)
100 cd02986 DLP Dim1 family, Dim1- 92.4 0.47 1E-05 39.2 6.5 68 43-132 15-83 (114)
101 TIGR01295 PedC_BrcD bacterioci 92.3 0.59 1.3E-05 38.3 7.0 76 43-130 24-103 (122)
102 cd02959 ERp19 Endoplasmic reti 92.3 0.29 6.2E-06 39.7 5.0 46 37-86 15-60 (117)
103 cd02992 PDI_a_QSOX PDIa family 92.3 0.44 9.5E-06 38.2 6.1 63 44-125 21-84 (114)
104 PHA02278 thioredoxin-like prot 92.1 0.5 1.1E-05 37.7 6.2 71 40-130 13-85 (103)
105 cd02994 PDI_a_TMX PDIa family, 92.0 0.42 9.2E-06 36.5 5.6 60 43-125 18-77 (101)
106 PTZ00253 tryparedoxin peroxida 92.0 0.35 7.7E-06 42.5 5.7 106 41-147 36-164 (199)
107 cd03017 PRX_BCP Peroxiredoxin 92.0 0.38 8.2E-06 38.7 5.5 59 41-116 23-81 (140)
108 cd03001 PDI_a_P5 PDIa family, 91.9 0.51 1.1E-05 35.8 5.8 60 42-125 19-78 (103)
109 PRK13728 conjugal transfer pro 91.8 0.86 1.9E-05 40.4 7.9 90 48-148 75-172 (181)
110 cd02998 PDI_a_ERp38 PDIa famil 91.8 0.5 1.1E-05 35.7 5.7 62 43-125 20-81 (105)
111 COG0526 TrxA Thiol-disulfide i 91.7 0.18 4E-06 36.7 3.0 42 41-86 32-73 (127)
112 PTZ00443 Thioredoxin domain-co 91.7 0.45 9.7E-06 43.4 6.1 83 41-147 52-139 (224)
113 cd03005 PDI_a_ERp46 PDIa famil 91.3 0.5 1.1E-05 35.7 5.2 65 43-128 18-84 (102)
114 cd02965 HyaE HyaE family; HyaE 91.3 1.4 3.1E-05 36.1 8.1 64 44-130 29-96 (111)
115 cd02997 PDI_a_PDIR PDIa family 91.2 0.4 8.7E-06 36.3 4.6 64 44-126 19-82 (104)
116 cd02999 PDI_a_ERp44_like PDIa 91.1 0.56 1.2E-05 36.7 5.4 58 44-124 20-77 (100)
117 cd02982 PDI_b'_family Protein 91.1 0.74 1.6E-05 35.0 6.0 62 44-126 14-75 (103)
118 PRK14018 trifunctional thiored 90.9 0.35 7.5E-06 49.4 5.0 97 44-144 58-170 (521)
119 TIGR02738 TrbB type-F conjugat 90.9 2.4 5.2E-05 36.3 9.5 39 42-84 51-89 (153)
120 cd03014 PRX_Atyp2cys Peroxired 90.8 0.78 1.7E-05 37.3 6.2 43 40-86 25-67 (143)
121 COG3118 Thioredoxin domain-con 90.4 1.2 2.5E-05 42.7 7.7 85 43-148 44-131 (304)
122 cd03065 PDI_b_Calsequestrin_N 90.3 1.7 3.6E-05 35.9 7.7 90 37-145 22-117 (120)
123 TIGR02740 TraF-like TraF-like 90.2 0.94 2E-05 42.2 6.9 93 40-147 165-264 (271)
124 TIGR01617 arsC_related transcr 89.2 0.19 4.2E-06 40.6 1.3 22 46-67 1-22 (117)
125 cd03015 PRX_Typ2cys Peroxiredo 89.1 0.43 9.4E-06 40.6 3.5 44 41-86 29-72 (173)
126 PF07315 DUF1462: Protein of u 88.9 1.8 4E-05 34.5 6.6 71 51-135 6-83 (93)
127 PRK09437 bcp thioredoxin-depen 88.5 1.1 2.3E-05 37.1 5.4 60 40-116 29-88 (154)
128 PTZ00062 glutaredoxin; Provisi 88.4 1.3 2.8E-05 39.9 6.2 26 106-134 157-182 (204)
129 PTZ00056 glutathione peroxidas 88.4 2.6 5.6E-05 37.3 8.0 63 41-115 39-103 (199)
130 cd03000 PDI_a_TMX3 PDIa family 88.1 0.94 2E-05 35.1 4.5 66 41-127 15-81 (104)
131 PLN00410 U5 snRNP protein, DIM 87.9 1.7 3.6E-05 37.1 6.3 56 40-117 22-77 (142)
132 cd03036 ArsC_like Arsenate Red 87.9 0.26 5.6E-06 39.7 1.3 23 46-68 1-23 (111)
133 cd02968 SCO SCO (an acronym fo 87.6 2.6 5.7E-05 33.8 7.1 61 43-114 23-85 (142)
134 cd02987 Phd_like_Phd Phosducin 87.4 2 4.4E-05 37.3 6.7 62 43-130 85-148 (175)
135 cd02996 PDI_a_ERp44 PDIa famil 87.4 1.7 3.7E-05 33.8 5.6 67 41-128 18-89 (108)
136 KOG0910 Thioredoxin-like prote 87.4 1.9 4.2E-05 37.3 6.4 85 41-147 61-148 (150)
137 PTZ00062 glutaredoxin; Provisi 87.3 3.3 7.1E-05 37.3 8.1 75 43-149 18-96 (204)
138 COG1651 DsbG Protein-disulfide 87.1 1 2.2E-05 40.2 4.8 42 103-146 201-242 (244)
139 cd02977 ArsC_family Arsenate R 87.1 0.34 7.3E-06 38.2 1.5 24 46-69 1-24 (105)
140 PRK13191 putative peroxiredoxi 87.1 1 2.2E-05 40.6 4.7 105 41-146 33-160 (215)
141 cd03006 PDI_a_EFP1_N PDIa fami 86.7 2.6 5.6E-05 34.2 6.5 68 40-129 28-96 (113)
142 cd03045 GST_N_Delta_Epsilon GS 86.6 3.8 8.1E-05 29.3 6.8 62 46-130 1-62 (74)
143 cd00570 GST_N_family Glutathio 86.5 2.4 5.2E-05 28.6 5.5 24 46-69 1-24 (71)
144 PRK15000 peroxidase; Provision 86.5 0.98 2.1E-05 40.1 4.3 105 40-145 33-160 (200)
145 TIGR03137 AhpC peroxiredoxin. 86.5 1.3 2.9E-05 38.5 5.1 86 40-126 30-126 (187)
146 PRK11657 dsbG disulfide isomer 86.1 6.3 0.00014 36.3 9.5 28 42-69 117-144 (251)
147 PRK12559 transcriptional regul 85.8 0.49 1.1E-05 39.5 1.9 23 46-68 2-24 (131)
148 PRK01655 spxA transcriptional 85.6 0.51 1.1E-05 39.2 1.9 24 46-69 2-25 (131)
149 cd03051 GST_N_GTT2_like GST_N 85.5 2.5 5.5E-05 29.8 5.3 24 46-69 1-24 (74)
150 cd03032 ArsC_Spx Arsenate Redu 85.1 0.6 1.3E-05 37.7 2.0 23 46-68 2-24 (115)
151 TIGR00014 arsC arsenate reduct 85.1 4.6 0.0001 32.6 7.2 23 46-68 1-23 (114)
152 PF01323 DSBA: DSBA-like thior 84.5 1.9 4.2E-05 36.4 5.0 38 104-143 154-192 (193)
153 PF13728 TraF: F plasmid trans 83.7 2.3 5.1E-05 38.3 5.4 70 41-125 120-189 (215)
154 TIGR02540 gpx7 putative glutat 83.4 4 8.7E-05 33.9 6.4 66 41-116 22-88 (153)
155 PLN02919 haloacid dehalogenase 82.8 3.2 7E-05 45.7 7.1 100 43-146 421-535 (1057)
156 PRK00522 tpx lipid hydroperoxi 82.3 5.1 0.00011 34.1 6.7 65 40-126 43-107 (167)
157 TIGR03143 AhpF_homolog putativ 82.2 3.9 8.5E-05 41.5 7.0 62 40-125 364-425 (555)
158 cd03041 GST_N_2GST_N GST_N fam 82.1 5.5 0.00012 29.3 6.1 24 46-69 2-25 (77)
159 cd02988 Phd_like_VIAF Phosduci 82.1 4 8.6E-05 36.2 6.2 60 43-130 104-165 (192)
160 PF00578 AhpC-TSA: AhpC/TSA fa 80.0 3.1 6.7E-05 32.4 4.3 58 40-114 24-81 (124)
161 TIGR01130 ER_PDI_fam protein d 79.3 7.7 0.00017 37.2 7.6 85 44-148 20-110 (462)
162 PRK13189 peroxiredoxin; Provis 78.9 3.2 6.8E-05 37.5 4.5 105 41-146 35-162 (222)
163 PRK10382 alkyl hydroperoxide r 78.9 5.4 0.00012 35.2 5.9 106 40-147 30-156 (187)
164 cd02995 PDI_a_PDI_a'_C PDIa fa 78.7 8.4 0.00018 28.8 6.2 41 44-85 20-60 (104)
165 cd03016 PRX_1cys Peroxiredoxin 77.6 5 0.00011 35.4 5.4 104 42-146 26-153 (203)
166 cd02970 PRX_like2 Peroxiredoxi 77.5 5.8 0.00013 31.8 5.3 44 41-86 23-66 (149)
167 PTZ00137 2-Cys peroxiredoxin; 76.7 4.4 9.5E-05 37.9 4.9 106 40-146 97-224 (261)
168 PRK13599 putative peroxiredoxi 76.5 4.3 9.3E-05 36.5 4.7 104 41-145 28-154 (215)
169 cd03040 GST_N_mPGES2 GST_N fam 76.5 1.7 3.7E-05 31.6 1.7 24 46-69 2-25 (77)
170 PRK13344 spxA transcriptional 76.2 1.7 3.7E-05 36.3 1.9 23 46-68 2-24 (132)
171 PRK13190 putative peroxiredoxi 76.2 7.5 0.00016 34.3 6.1 106 41-147 27-154 (202)
172 PTZ00256 glutathione peroxidas 75.6 4.2 9.1E-05 35.2 4.2 45 40-86 39-83 (183)
173 cd03024 DsbA_FrnE DsbA family, 75.5 5.4 0.00012 34.1 4.8 39 103-143 161-200 (201)
174 cd03022 DsbA_HCCA_Iso DsbA fam 75.3 5 0.00011 33.9 4.6 29 104-135 154-182 (192)
175 TIGR00424 APS_reduc 5'-adenyly 74.8 7.6 0.00016 39.3 6.3 65 44-128 373-439 (463)
176 COG3634 AhpF Alkyl hydroperoxi 74.8 8.2 0.00018 38.4 6.3 80 40-145 114-193 (520)
177 cd03055 GST_N_Omega GST_N fami 73.9 9.1 0.0002 29.0 5.3 27 43-69 16-42 (89)
178 PTZ00102 disulphide isomerase; 73.3 10 0.00023 36.9 6.8 89 39-148 47-139 (477)
179 cd02958 UAS UAS family; UAS is 70.9 20 0.00043 28.2 6.8 60 41-125 17-82 (114)
180 PRK10606 btuE putative glutath 69.8 16 0.00034 32.2 6.5 89 43-147 26-115 (183)
181 cd03053 GST_N_Phi GST_N family 68.9 27 0.00058 24.9 6.6 25 45-69 1-25 (76)
182 cd03033 ArsC_15kD Arsenate Red 68.1 3.7 8E-05 33.4 2.0 23 46-68 2-24 (113)
183 cd03035 ArsC_Yffb Arsenate Red 67.7 2.9 6.4E-05 33.4 1.3 23 46-68 1-23 (105)
184 PLN02309 5'-adenylylsulfate re 67.3 13 0.00028 37.6 6.0 61 44-125 367-428 (457)
185 cd03007 PDI_a_ERp29_N PDIa fam 67.2 36 0.00077 28.0 7.7 92 37-144 14-113 (116)
186 smart00594 UAS UAS domain. 67.1 29 0.00063 27.9 7.1 62 39-125 25-92 (122)
187 COG2143 Thioredoxin-related pr 67.0 9.9 0.00021 33.6 4.5 79 41-126 41-122 (182)
188 KOG0190 Protein disulfide isom 66.8 25 0.00055 35.9 8.0 94 31-147 32-132 (493)
189 cd00340 GSH_Peroxidase Glutath 65.1 14 0.0003 30.7 5.0 63 44-116 24-87 (152)
190 COG4837 Uncharacterized protei 64.3 17 0.00036 29.5 4.9 79 44-136 5-91 (106)
191 cd03056 GST_N_4 GST_N family, 63.7 25 0.00053 24.7 5.5 25 46-70 1-25 (73)
192 cd03059 GST_N_SspA GST_N famil 63.2 28 0.00061 24.5 5.7 24 46-69 1-24 (73)
193 PRK13703 conjugal pilus assemb 61.7 16 0.00035 34.0 5.2 70 42-126 144-214 (248)
194 cd03060 GST_N_Omega_like GST_N 61.2 22 0.00047 25.4 4.9 56 48-129 3-59 (71)
195 COG4545 Glutaredoxin-related p 60.1 7.6 0.00016 30.3 2.2 23 47-69 5-27 (85)
196 KOG3425 Uncharacterized conser 59.3 23 0.00049 29.9 5.1 47 45-96 28-82 (128)
197 PTZ00102 disulphide isomerase; 58.7 20 0.00042 35.0 5.5 88 40-149 374-467 (477)
198 PF04694 Corona_3: Coronavirus 57.2 4.6 9.9E-05 29.3 0.6 12 3-14 34-45 (60)
199 cd03034 ArsC_ArsC Arsenate Red 56.2 6.5 0.00014 31.6 1.4 23 46-68 1-23 (112)
200 KOG0190 Protein disulfide isom 55.3 13 0.00029 37.9 3.7 44 41-86 384-427 (493)
201 PF06110 DUF953: Eukaryotic pr 55.1 9.6 0.00021 31.6 2.3 66 44-125 21-95 (119)
202 PF14595 Thioredoxin_9: Thiore 54.5 4.6 0.0001 33.6 0.3 78 37-135 36-116 (129)
203 PF07282 OrfB_Zn_ribbon: Putat 53.4 4.8 0.0001 29.3 0.2 13 47-59 24-36 (69)
204 TIGR01626 ytfJ_HI0045 conserve 52.1 22 0.00047 31.6 4.2 48 42-89 59-108 (184)
205 PRK07758 hypothetical protein; 51.6 5.8 0.00012 31.9 0.4 17 47-63 15-31 (95)
206 cd03052 GST_N_GDAP1 GST_N fami 50.5 49 0.0011 24.1 5.3 61 46-129 1-61 (73)
207 TIGR02739 TraF type-F conjugat 50.1 51 0.0011 30.8 6.5 70 42-126 151-221 (256)
208 cd03008 TryX_like_RdCVF Trypar 47.1 60 0.0013 27.6 6.0 45 42-86 25-74 (146)
209 PRK10853 putative reductase; P 46.8 14 0.0003 30.2 2.0 22 46-67 2-23 (118)
210 COG2761 FrnE Predicted dithiol 46.8 24 0.00052 32.5 3.7 39 110-150 177-216 (225)
211 cd03037 GST_N_GRX2 GST_N famil 46.8 81 0.0017 22.2 5.9 23 47-69 2-24 (71)
212 cd02974 AhpF_NTD_N Alkyl hydro 44.4 28 0.0006 27.5 3.3 31 39-70 16-46 (94)
213 PF02630 SCO1-SenC: SCO1/SenC; 44.2 38 0.00083 29.1 4.4 64 41-116 52-116 (174)
214 TIGR01130 ER_PDI_fam protein d 43.1 35 0.00076 32.7 4.4 45 41-86 364-408 (462)
215 PRK10026 arsenate reductase; P 42.8 17 0.00037 30.9 2.0 23 46-68 4-26 (141)
216 TIGR03757 conj_TIGR03757 integ 42.1 41 0.00089 27.8 4.0 43 97-143 55-106 (113)
217 cd02991 UAS_ETEA UAS family, E 41.9 69 0.0015 26.0 5.4 64 38-125 14-82 (116)
218 COG1393 ArsC Arsenate reductas 41.4 58 0.0013 26.7 4.9 24 46-69 3-26 (117)
219 COG1999 Uncharacterized protei 40.6 1E+02 0.0022 27.6 6.6 57 44-111 69-127 (207)
220 TIGR01616 nitro_assoc nitrogen 40.6 21 0.00045 29.7 2.1 23 46-68 3-25 (126)
221 PLN02412 probable glutathione 40.4 43 0.00093 28.4 4.1 44 41-87 29-72 (167)
222 COG5204 SPT4 Transcription elo 38.4 13 0.00029 30.1 0.6 14 46-59 21-34 (112)
223 PF07511 DUF1525: Protein of u 36.0 67 0.0014 26.6 4.4 43 97-143 54-105 (114)
224 PF01507 PAPS_reduct: Phosphoa 35.2 13 0.00028 30.7 0.1 12 49-60 163-174 (174)
225 PRK11509 hydrogenase-1 operon 34.2 2.6E+02 0.0056 23.6 7.7 88 43-152 35-129 (132)
226 PLN02399 phospholipid hydroper 34.0 63 0.0014 29.7 4.4 41 44-86 101-141 (236)
227 PRK15317 alkyl hydroperoxide r 30.2 48 0.0011 33.2 3.2 31 39-70 16-46 (517)
228 cd03050 GST_N_Theta GST_N fami 29.5 2.1E+02 0.0045 20.3 6.2 24 46-69 1-24 (76)
229 PRK09481 sspA stringent starva 27.6 2.3E+02 0.005 24.4 6.7 75 44-147 9-83 (211)
230 PRK15431 ferrous iron transpor 27.2 16 0.00035 28.4 -0.6 12 51-62 58-69 (78)
231 PF01106 NifU: NifU-like domai 25.6 35 0.00075 25.3 0.9 22 43-66 28-49 (68)
232 PF09463 Opy2: Opy2 protein; 24.9 27 0.00059 23.1 0.2 13 48-60 21-33 (35)
233 PRK13794 hypothetical protein; 24.4 26 0.00057 35.4 0.1 49 44-116 406-456 (479)
234 PF13417 GST_N_3: Glutathione 23.5 2.8E+02 0.0061 19.8 7.1 71 48-147 1-71 (75)
235 PF05407 Peptidase_C27: Rubell 23.1 34 0.00075 28.8 0.6 19 47-66 60-78 (166)
236 TIGR03140 AhpF alkyl hydropero 22.7 81 0.0017 31.7 3.2 31 39-70 16-46 (515)
237 PF03960 ArsC: ArsC family; I 22.2 32 0.0007 27.2 0.2 19 49-67 1-19 (110)
238 TIGR01501 MthylAspMutase methy 20.8 2.7E+02 0.0059 23.4 5.6 73 55-145 36-108 (134)
239 PF06093 Spt4: Spt4/RpoE2 zinc 20.6 22 0.00048 27.3 -1.0 10 48-57 15-24 (77)
240 KOG3490 Transcription elongati 20.3 34 0.00074 28.1 0.0 13 46-58 20-32 (111)
241 PRK08576 hypothetical protein; 20.2 55 0.0012 33.0 1.4 23 49-71 395-417 (438)
242 PHA02942 putative transposase; 20.1 44 0.00095 32.8 0.7 11 49-59 323-333 (383)
No 1
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=100.00 E-value=8.8e-69 Score=476.46 Aligned_cols=200 Identities=42% Similarity=0.710 Sum_probs=135.3
Q ss_pred EEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceEE
Q 023845 45 LVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQLV 124 (276)
Q Consensus 45 vVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~v 124 (276)
|||||||||||||||||++|++|+++ ++||+|+||||||||||||||||+|+||+|||+|++.+|.++|||||||
T Consensus 1 vVELFTSQGCsSCPpAD~~L~~l~~~-----~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~v 75 (202)
T PF06764_consen 1 VVELFTSQGCSSCPPADRLLSELAAR-----PDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVV 75 (202)
T ss_dssp EEEEEE-TT-TT-HHHHHHHHHHHHH-----TSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEE
T ss_pred CeeEecCCCCCCCcHHHHHHHHhhcC-----CCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEE
Confidence 79999999999999999999999985 4999999999999999999999999999999999999999999999999
Q ss_pred EcCeEeccCCChhhHHHHHHcCCCCCC-CceeEEEeeecCCCceEEEEEecccccccCCCCeEEEEEEEeCCeeeecCCC
Q 023845 125 FQGRVQCQGNDQDGMLSAIANAPKFPA-PSFQATFERLTSGSESLQVSLTGSLRSKVDNQGANIMVALYESGLVTNCPAG 203 (276)
Q Consensus 125 VnG~~~~~g~~~~~~~~~i~~~~~~~~-~~i~l~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~l~l~l~e~~~~~~V~~G 203 (276)
|||+++++|++.+++..+|.+....++ ..++++++. .+ +.+.|+++...... ...+++|+|++|+++++++|++|
T Consensus 76 VnG~~~~~g~~~~~~~~ai~~~~~~~~~~~~~~~~~~-~~--~~~~v~~~~~~~~~-~~~~~~v~la~~~~~~~~~V~rG 151 (202)
T PF06764_consen 76 VNGREHRVGSDRAAVEAAIQAARARPAPAALTLSLSR-DG--DGLQVEVSAAGAAP-NAGPADVWLALYEPGLTVQVKRG 151 (202)
T ss_dssp ETTTEEEETT-HHHHHHHHHHHHHTT-S--S-EEEEE--S--SSEEEEE---SS-E------EEEEEEEEEEEEEE----
T ss_pred ECCeeeeeccCHHHHHHHHHHhhccCCCCceEEEEEe-cC--CcEEEEEEeCCCCC-ccceeEEEEEEEeCCceeecccc
Confidence 999999999999999999999887754 356666664 22 45555555432111 23468999999999999999999
Q ss_pred CCCCeeeeeceeeeeeeeccccccCCCCccceeeEeeecCCCcC-CCCceEEEEEEc
Q 023845 204 ENKGRVLSNDYVVRKLEKLCTVKDISPKKHVSGTVTFPLWEGFN-SGKCGVAVFVQN 259 (276)
Q Consensus 204 EN~Gr~L~h~~VVR~~~~~g~~g~w~~~~~~~~~~~~~l~~~~~-~~~~~vVvfVQ~ 259 (276)
||+||+|+|+||||++.++| +|++.. .++++|++.... ....++||||||
T Consensus 152 EN~GrtL~h~nVVr~~~~~g---~w~g~~---~~~~~~~~~~~~~~~~~~~vv~vQ~ 202 (202)
T PF06764_consen 152 ENAGRTLTHDNVVRDLQKIG---DWDGGP---ATFTLPLPLDPDDPDGDGLVVFVQN 202 (202)
T ss_dssp -----EEEEEEEEEEEEEEE---EE-SS----EEEEE-HHHHHHHT-TEEEEEEEE-
T ss_pred cCCCCEEEccEEEEEEEecc---cccCCc---eEEEecccccCCCcccceEEEEEeC
Confidence 99999999999999999985 556543 246666653332 123399999997
No 2
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=100.00 E-value=1.8e-65 Score=459.10 Aligned_cols=215 Identities=31% Similarity=0.510 Sum_probs=183.2
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCc
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFT 120 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYT 120 (276)
+.+.|||||||||||||||||++|.+++.+ ++|++|+|||||||||||||+|++++||+||++|.+.||.+.|||
T Consensus 40 k~~~VVELfTSQGCsSCPPAd~~l~k~a~~-----~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyT 114 (261)
T COG5429 40 KPLGVVELFTSQGCSSCPPADANLAKLADD-----PGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYT 114 (261)
T ss_pred CCceEEEEeecCCcCCCChHHHHHHHhccC-----CCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCC
Confidence 678999999999999999999999999984 589999999999999999999999999999999999999999999
Q ss_pred ceEEEcCeEeccCCChhhHHHHHHcCCCCCC-CceeEEEeeecCCCceEEEEEecccccccCCCCeEEEEEEEeCCeeee
Q 023845 121 PQLVFQGRVQCQGNDQDGMLSAIANAPKFPA-PSFQATFERLTSGSESLQVSLTGSLRSKVDNQGANIMVALYESGLVTN 199 (276)
Q Consensus 121 Pq~vVnG~~~~~g~~~~~~~~~i~~~~~~~~-~~i~l~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~l~l~l~e~~~~~~ 199 (276)
||+|||||.++.|.+..+++++|....+.+. -.+.++++. ++++|.|.+.+. .+.+++++|++|+++.++.
T Consensus 115 PQavvnGr~~~~Gad~~~i~~~i~a~~~~g~gl~vPv~~~~---~gdrvaI~~GAg-----~G~~a~Vvlvyf~~~~~v~ 186 (261)
T COG5429 115 PQAVVNGRVHANGADPGAIEDAIAAMARRGAGLEVPVDAQF---GGDRVAIDIGAG-----KGPPADVVLVYFDPGQVVP 186 (261)
T ss_pred chheeechhhhcCCCHHHHHHHHHHhhcccccccCCcchhh---cCceEEEecCCC-----CCCCceEEEEEecCCceec
Confidence 9999999999999999999999998766553 234555543 135666666532 1227899999999999999
Q ss_pred cCCCCCCCeeeeeceeeeeeeeccccccCCCCccceeeEeeecCCCcCCCCceEEEEEEcCC-----CceeEEeeccCCC
Q 023845 200 CPAGENKGRVLSNDYVVRKLEKLCTVKDISPKKHVSGTVTFPLWEGFNSGKCGVAVFVQNNS-----HHIFGSQNFQLPD 274 (276)
Q Consensus 200 V~~GEN~Gr~L~h~~VVR~~~~~g~~g~w~~~~~~~~~~~~~l~~~~~~~~~~vVvfVQ~~~-----G~ILgAa~~~lp~ 274 (276)
|.+|||.||+|+|.||||+|+.+ |+|+|+++ ++++|..+..... .+|+|+||... |+||||+.+..+.
T Consensus 187 i~~GEN~Gk~l~y~nvV~~i~t~---GmW~Gkp~---~~~LPas~~a~~~-~gcaVllQs~~~~~~~g~IlgAa~~~~~~ 259 (261)
T COG5429 187 IARGENSGKELTYWNVVRDIQTL---GMWDGKPT---TYELPASELAKKR-TGCAVLLQSAKGDGRPGPILGAATALGCR 259 (261)
T ss_pred ccccccCCcEeehhhhhhhhhcc---cccCCCce---eEEccchhhccCC-cCcEEEEeeccCCCCCchhhHHHhcccCC
Confidence 99999999999999999999998 57888765 6777766654444 57999999542 8999999988765
Q ss_pred C
Q 023845 275 N 275 (276)
Q Consensus 275 ~ 275 (276)
+
T Consensus 260 ~ 260 (261)
T COG5429 260 K 260 (261)
T ss_pred C
Confidence 3
No 3
>PF11551 Omp28: Outer membrane protein Omp28; InterPro: IPR021615 Omp28 is a 28kDa outer membrane protein from Porphyromonas gingivalis. Omp28 is thought to be a surface adhesion/receptor protein. Omp28 is expressed in a wide distribution of P.gingivalis strains []. ; PDB: 2R2C_A.
Probab=99.62 E-value=5.3e-16 Score=136.39 Aligned_cols=162 Identities=14% Similarity=0.157 Sum_probs=61.1
Q ss_pred HHHHHHhCCCCCCcceEEEcCeEeccCC----ChhhHHHHHHcCCCCCCC--ceeEEEeeecCCCceEEEEEeccccccc
Q 023845 107 KAYVEALNLDTMFTPQLVFQGRVQCQGN----DQDGMLSAIANAPKFPAP--SFQATFERLTSGSESLQVSLTGSLRSKV 180 (276)
Q Consensus 107 ~~Y~~~~g~~~vYTPq~vVnG~~~~~g~----~~~~~~~~i~~~~~~~~~--~i~l~~~~~~~~~~~l~v~~~~~~~~~~ 180 (276)
..|.++|++.+ .|.++||++...... ....|...|.+....... .|.++.+. + +++++|++.+......
T Consensus 9 ~~~~~~~~v~g--~P~~~vNR~~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~i~i~~~~-~--~~~~~vtv~~~~~~~~ 83 (184)
T PF11551_consen 9 SALMKQWGVSG--YPSAMVNRKGGWLSKNYSATKTAWNKSIAEELAQYPATVGIAIESKY-D--GSKLNVTVKVKALKDA 83 (184)
T ss_dssp --------------------------------EE-B--------------EEEEEEEEEE-E--TTEEEEEEEEEE-TT-
T ss_pred hcccccccCCC--CCeEEEECCCccccccccccccchhHHHHHHhhcCCCeeEEEEEEEE-c--CceEEEEEEEEEecCC
Confidence 46778899888 999999965433210 034465666554433322 34554433 2 2566666665422111
Q ss_pred CCCCeEEEEEEEeCCeeeecCCCCCCCeeeeeceeeeeeeeccccccC---CCCc-cceeeEeeecCCCcCCCCceEEEE
Q 023845 181 DNQGANIMVALYESGLVTNCPAGENKGRVLSNDYVVRKLEKLCTVKDI---SPKK-HVSGTVTFPLWEGFNSGKCGVAVF 256 (276)
Q Consensus 181 ~~~~~~l~l~l~e~~~~~~V~~GEN~Gr~L~h~~VVR~~~~~g~~g~w---~~~~-~~~~~~~~~l~~~~~~~~~~vVvf 256 (276)
..+.+|+|||+||+++-.-..|.+..+.++|+||+|+..+ +.||+- .+.. ..+.+++++||+.|+++++.+|+|
T Consensus 84 -~~~~kL~v~LvED~I~a~Q~~~g~~~~~Y~HnhVlR~~l~-~~~G~~i~~~~~~~~~t~~~~~~l~~~~~~~n~~vVaf 161 (184)
T PF11551_consen 84 -EDNYKLQVWLVEDGIVAPQQNGGGTIKNYVHNHVLRAALN-GIWGDEITLSKAGEEKTYSFTYTLPKGWNAENMSVVAF 161 (184)
T ss_dssp ----SEEEEEEEEE-------------------EEEEEETT--TT-EE--TT-EE-EEEEE----TT----GGGEEEEEE
T ss_pred -CCCceEEEEEEeCCeeeccccCCCCcCCceehhhhHhhhc-ccCCcCccccCCCcceEEEEEEecCCCccccceEEEEE
Confidence 1258999999999998544457777799999999999888 788863 3222 567788999999999999999999
Q ss_pred EEcCCC-ceeEEeeccCCCC
Q 023845 257 VQNNSH-HIFGSQNFQLPDN 275 (276)
Q Consensus 257 VQ~~~G-~ILgAa~~~lp~~ 275 (276)
|.|.+| .|+++++..+..+
T Consensus 162 V~~~~g~~V~nv~~~~v~~~ 181 (184)
T PF11551_consen 162 VYDDNGYEVLNVVRAKVGGS 181 (184)
T ss_dssp EEETTT-EEEEEEEEEEE--
T ss_pred EEeCCCcEEEEEEEEecCCC
Confidence 999986 9999998766543
No 4
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.90 E-value=1.1e-08 Score=76.06 Aligned_cols=80 Identities=23% Similarity=0.359 Sum_probs=58.6
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceE
Q 023845 44 VLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQL 123 (276)
Q Consensus 44 vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~ 123 (276)
|.|++|++.+|++|+.+...|.+|++++ ..++. -+.||. | .+ ....+++|+++ +|++
T Consensus 1 ~~v~~f~~~~C~~C~~~~~~l~~l~~~~---~~~~~--~~~vd~-~-------------~~--~~~~~~~~v~~--vPt~ 57 (82)
T TIGR00411 1 VKIELFTSPTCPYCPAAKRVVEEVAKEM---GDAVE--VEYINV-M-------------EN--PQKAMEYGIMA--VPAI 57 (82)
T ss_pred CEEEEEECCCCcchHHHHHHHHHHHHHh---cCceE--EEEEeC-c-------------cC--HHHHHHcCCcc--CCEE
Confidence 5799999999999999999999998865 23332 235552 0 11 23356788888 8999
Q ss_pred EEcCeEeccCC-ChhhHHHHHHcC
Q 023845 124 VFQGRVQCQGN-DQDGMLSAIANA 146 (276)
Q Consensus 124 vVnG~~~~~g~-~~~~~~~~i~~~ 146 (276)
++||+....|. +.+.+...|.+.
T Consensus 58 ~~~g~~~~~G~~~~~~l~~~l~~~ 81 (82)
T TIGR00411 58 VINGDVEFIGAPTKEELVEAIKKR 81 (82)
T ss_pred EECCEEEEecCCCHHHHHHHHHhh
Confidence 99999766675 577777777653
No 5
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.61 E-value=1.9e-07 Score=72.97 Aligned_cols=72 Identities=15% Similarity=0.221 Sum_probs=57.7
Q ss_pred hcCCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCC
Q 023845 39 RRGGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTM 118 (276)
Q Consensus 39 ~~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~v 118 (276)
.-++||-|.+|++.+|++||.+.+++.+|+.++ +++-..-+.+|- -...+.++|+++
T Consensus 9 ~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~----~~i~~~~vd~~~------------------~~e~a~~~~V~~- 65 (89)
T cd03026 9 RLNGPINFETYVSLSCHNCPDVVQALNLMAVLN----PNIEHEMIDGAL------------------FQDEVEERGIMS- 65 (89)
T ss_pred hcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHC----CCceEEEEEhHh------------------CHHHHHHcCCcc-
Confidence 456789999999999999999999999999863 465555555541 134577899887
Q ss_pred CcceEEEcCeEeccCC
Q 023845 119 FTPQLVFQGRVQCQGN 134 (276)
Q Consensus 119 YTPq~vVnG~~~~~g~ 134 (276)
+|.+++||+....|.
T Consensus 66 -vPt~vidG~~~~~G~ 80 (89)
T cd03026 66 -VPAIFLNGELFGFGR 80 (89)
T ss_pred -CCEEEECCEEEEeCC
Confidence 999999999888774
No 6
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.57 E-value=3.5e-07 Score=66.06 Aligned_cols=66 Identities=20% Similarity=0.343 Sum_probs=48.7
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceE
Q 023845 44 VLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQL 123 (276)
Q Consensus 44 vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~ 123 (276)
|-|++|++.+|++|+.+.++|++|+.. .+++--.-++++ . . ...++++|+.+ +|++
T Consensus 1 ~~v~~f~~~~C~~C~~~~~~l~~l~~~----~~~i~~~~id~~-----------~-----~--~~l~~~~~i~~--vPti 56 (67)
T cd02973 1 VNIEVFVSPTCPYCPDAVQAANRIAAL----NPNISAEMIDAA-----------E-----F--PDLADEYGVMS--VPAI 56 (67)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHHHh----CCceEEEEEEcc-----------c-----C--HhHHHHcCCcc--cCEE
Confidence 358999999999999999999999764 235444444443 1 1 23567788877 9999
Q ss_pred EEcCeEeccC
Q 023845 124 VFQGRVQCQG 133 (276)
Q Consensus 124 vVnG~~~~~g 133 (276)
+|||+....|
T Consensus 57 ~i~~~~~~~g 66 (67)
T cd02973 57 VINGKVEFVG 66 (67)
T ss_pred EECCEEEEec
Confidence 9999876554
No 7
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.17 E-value=1.3e-05 Score=60.18 Aligned_cols=72 Identities=19% Similarity=0.315 Sum_probs=49.0
Q ss_pred EEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceEE
Q 023845 45 LVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQLV 124 (276)
Q Consensus 45 vVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~v 124 (276)
-|++ .+.+|++||.+.+++.++..+. ++- +++. | .++-++ ..++|+++ +|.++
T Consensus 2 ~I~v-~~~~C~~C~~~~~~~~~~~~~~-----~i~---~ei~--~------------~~~~~~--~~~ygv~~--vPalv 54 (76)
T PF13192_consen 2 KIKV-FSPGCPYCPELVQLLKEAAEEL-----GIE---VEII--D------------IEDFEE--IEKYGVMS--VPALV 54 (76)
T ss_dssp EEEE-ECSSCTTHHHHHHHHHHHHHHT-----TEE---EEEE--E------------TTTHHH--HHHTT-SS--SSEEE
T ss_pred EEEE-eCCCCCCcHHHHHHHHHHHHhc-----CCe---EEEE--E------------ccCHHH--HHHcCCCC--CCEEE
Confidence 4788 4667999999999999998854 422 2332 1 133333 38899888 99999
Q ss_pred EcCeEeccCC-C-hhhHHHHH
Q 023845 125 FQGRVQCQGN-D-QDGMLSAI 143 (276)
Q Consensus 125 VnG~~~~~g~-~-~~~~~~~i 143 (276)
|||+..+.|. . .+.+..+|
T Consensus 55 Ing~~~~~G~~p~~~el~~~l 75 (76)
T PF13192_consen 55 INGKVVFVGRVPSKEELKELL 75 (76)
T ss_dssp ETTEEEEESS--HHHHHHHHH
T ss_pred ECCEEEEEecCCCHHHHHHHh
Confidence 9999999984 2 34444443
No 8
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.12 E-value=6.5e-06 Score=58.64 Aligned_cols=59 Identities=20% Similarity=0.342 Sum_probs=40.5
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceEEE
Q 023845 46 VELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQLVF 125 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~vV 125 (276)
|++||+++|+.|..|.++|.+..-.+ --+.|+ .+ .+.++.+.+..|..+ +|+++|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y---------~~~dv~-----------~~---~~~~~~l~~~~g~~~--~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPY---------EEVDVD-----------ED---EEAREELKELSGVRT--VPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEE---------EEEEGG-----------GS---HHHHHHHHHHHSSSS--SSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCee---------eEcccc-----------cc---hhHHHHHHHHcCCCc--cCEEEE
Confidence 78999999999999999998754321 112222 11 144455555557777 999999
Q ss_pred cCeE
Q 023845 126 QGRV 129 (276)
Q Consensus 126 nG~~ 129 (276)
||+.
T Consensus 56 ~g~~ 59 (60)
T PF00462_consen 56 DGKF 59 (60)
T ss_dssp TTEE
T ss_pred CCEE
Confidence 9974
No 9
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.10 E-value=9e-06 Score=60.16 Aligned_cols=70 Identities=17% Similarity=0.314 Sum_probs=47.2
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceEEE
Q 023845 46 VELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQLVF 125 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~vV 125 (276)
|.+||..+|++|..|.++|.++.-.+ -..+++ +| ++. +.+....|..+ +|++++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~---------~~~di~-------~~----~~~----~~~~~~~g~~~--vP~v~~ 54 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAF---------EEINID-------EQ----PEA----IDYVKAQGFRQ--VPVIVA 54 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCce---------EEEECC-------CC----HHH----HHHHHHcCCcc--cCEEEE
Confidence 57999999999999999999753311 012222 11 211 22233456555 999999
Q ss_pred cCeEeccCCChhhHHH
Q 023845 126 QGRVQCQGNDQDGMLS 141 (276)
Q Consensus 126 nG~~~~~g~~~~~~~~ 141 (276)
||...++|-+++++.+
T Consensus 55 ~g~~~~~G~~~~~~~~ 70 (72)
T TIGR02194 55 DGDLSWSGFRPDKLKA 70 (72)
T ss_pred CCCcEEeccCHHHHHh
Confidence 9988888888888764
No 10
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.09 E-value=1.5e-05 Score=60.76 Aligned_cols=80 Identities=13% Similarity=0.178 Sum_probs=48.1
Q ss_pred EEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceEE
Q 023845 45 LVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQLV 124 (276)
Q Consensus 45 vVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~v 124 (276)
-|++|++.+|++|..|.++|.+|..++ .+|--.-++++ .|+ .+++ ...+..+.....+||++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~----~~i~~~~idi~-------~~~------~~~~-el~~~~~~~~~~vP~if 63 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEER----DDFDYRYVDIH-------AEG------ISKA-DLEKTVGKPVETVPQIF 63 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccc----cCCcEEEEECC-------CCh------HHHH-HHHHHHCCCCCcCCEEE
Confidence 489999999999999999999998642 23211122222 111 1122 22333443223589999
Q ss_pred EcCeEeccCCChhhHHHHHHc
Q 023845 125 FQGRVQCQGNDQDGMLSAIAN 145 (276)
Q Consensus 125 VnG~~~~~g~~~~~~~~~i~~ 145 (276)
|||+.. +| .+.+.++++.
T Consensus 64 i~g~~i-gg--~~~~~~~~~~ 81 (85)
T PRK11200 64 VDQKHI-GG--CTDFEAYVKE 81 (85)
T ss_pred ECCEEE-cC--HHHHHHHHHH
Confidence 999764 33 3556655554
No 11
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.08 E-value=1.4e-05 Score=71.01 Aligned_cols=82 Identities=16% Similarity=0.306 Sum_probs=58.3
Q ss_pred cCCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCC
Q 023845 40 RGGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMF 119 (276)
Q Consensus 40 ~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vY 119 (276)
-+.+++|.+|++.+|++|+.+..++.+++..+ ++|...-+.++ .-...++++|+++
T Consensus 131 ~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~----~~i~~~~vD~~------------------~~~~~~~~~~V~~-- 186 (215)
T TIGR02187 131 LDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN----DKILGEMIEAN------------------ENPDLAEKYGVMS-- 186 (215)
T ss_pred cCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc----CceEEEEEeCC------------------CCHHHHHHhCCcc--
Confidence 36789999999999999999999999999753 35443322222 1235677789888
Q ss_pred cceEEEcCeEe-ccCC-ChhhHHHHHHc
Q 023845 120 TPQLVFQGRVQ-CQGN-DQDGMLSAIAN 145 (276)
Q Consensus 120 TPq~vVnG~~~-~~g~-~~~~~~~~i~~ 145 (276)
+|+++|++... ..|. +.+++...|.+
T Consensus 187 vPtl~i~~~~~~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 187 VPKIVINKGVEEFVGAYPEEQFLEYILS 214 (215)
T ss_pred CCEEEEecCCEEEECCCCHHHHHHHHHh
Confidence 99999997653 4454 45666666653
No 12
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.05 E-value=2.6e-05 Score=60.06 Aligned_cols=80 Identities=13% Similarity=0.195 Sum_probs=48.8
Q ss_pred EEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceEE
Q 023845 45 LVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQLV 124 (276)
Q Consensus 45 vVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~v 124 (276)
+|.+||..+||.|..|.++|.++..+. +++--.-+.++ . ...+++ ...+..|.....+|+++
T Consensus 1 ~V~vys~~~Cp~C~~ak~~L~~~~~~~----~~i~~~~idi~-----------~--~~~~~~-~l~~~~g~~~~tVP~if 62 (86)
T TIGR02183 1 FVVIFGRPGCPYCVRAKQLAEKLAIER----ADFEFRYIDIH-----------A--EGISKA-DLEKTVGKPVETVPQIF 62 (86)
T ss_pred CEEEEeCCCCccHHHHHHHHHHhCccc----CCCcEEEEECC-----------C--CHHHHH-HHHHHhCCCCCCcCeEE
Confidence 478999999999999999999987542 22111111121 0 112232 24455554223599999
Q ss_pred EcCeEeccCCChhhHHHHHHc
Q 023845 125 FQGRVQCQGNDQDGMLSAIAN 145 (276)
Q Consensus 125 VnG~~~~~g~~~~~~~~~i~~ 145 (276)
|||+. ++|. +.+.+++++
T Consensus 63 i~g~~-igG~--~dl~~~~~~ 80 (86)
T TIGR02183 63 VDEKH-VGGC--TDFEQLVKE 80 (86)
T ss_pred ECCEE-ecCH--HHHHHHHHh
Confidence 99975 5554 566666654
No 13
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.04 E-value=1.8e-05 Score=58.06 Aligned_cols=61 Identities=18% Similarity=0.270 Sum_probs=39.9
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceEEE
Q 023845 46 VELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQLVF 125 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~vV 125 (276)
|+|||+.+|+.|..|.++|.++.-.+ --++++ .+ .+.+..+.+..|.. ..+|+++|
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~---------~~i~i~-----------~~---~~~~~~~~~~~~~~-~~vP~v~i 57 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDY---------EEIDVD-----------GD---PALREEMINRSGGR-RTVPQIFI 57 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcE---------EEEECC-----------CC---HHHHHHHHHHhCCC-CccCEEEE
Confidence 68999999999999999999753211 112332 11 22333444555544 24999999
Q ss_pred cCeEe
Q 023845 126 QGRVQ 130 (276)
Q Consensus 126 nG~~~ 130 (276)
||+..
T Consensus 58 ~g~~i 62 (75)
T cd03418 58 GDVHI 62 (75)
T ss_pred CCEEE
Confidence 99754
No 14
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.02 E-value=2e-05 Score=79.45 Aligned_cols=73 Identities=14% Similarity=0.206 Sum_probs=59.4
Q ss_pred hcCCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCC
Q 023845 39 RRGGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTM 118 (276)
Q Consensus 39 ~~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~v 118 (276)
..++++-|++|.|.+|++||.+.+.+.+++.+ .|+|-+-.+++.. | ...+.++++++
T Consensus 473 ~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~----~~~i~~~~i~~~~--------------~----~~~~~~~~v~~- 529 (555)
T TIGR03143 473 KITKPVNIKIGVSLSCTLCPDVVLAAQRIASL----NPNVEAEMIDVSH--------------F----PDLKDEYGIMS- 529 (555)
T ss_pred hcCCCeEEEEEECCCCCCcHHHHHHHHHHHHh----CCCceEEEEECcc--------------c----HHHHHhCCcee-
Confidence 44678999999999999999999999999986 3578877777752 2 34577788887
Q ss_pred CcceEEEcCeEeccCCC
Q 023845 119 FTPQLVFQGRVQCQGND 135 (276)
Q Consensus 119 YTPq~vVnG~~~~~g~~ 135 (276)
||.+||||+....|..
T Consensus 530 -vP~~~i~~~~~~~G~~ 545 (555)
T TIGR03143 530 -VPAIVVDDQQVYFGKK 545 (555)
T ss_pred -cCEEEECCEEEEeeCC
Confidence 9999999988777753
No 15
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.01 E-value=3.9e-05 Score=54.70 Aligned_cols=72 Identities=13% Similarity=0.272 Sum_probs=49.3
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceEEE
Q 023845 46 VELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQLVF 125 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~vV 125 (276)
|.+|++.+|++|..+..+|.+. ++-....+++ .. .+....+.+.+|..+ +|.+++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~---------~i~~~~vdi~-----------~~---~~~~~~~~~~~~~~~--vP~~~~ 56 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK---------GIAFEEIDVE-----------KD---SAAREEVLKVLGQRG--VPVIVI 56 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC---------CCeEEEEecc-----------CC---HHHHHHHHHHhCCCc--ccEEEE
Confidence 7899999999999999999863 2211122222 11 223345677788877 899999
Q ss_pred cCeEeccCCChhhHHHHH
Q 023845 126 QGRVQCQGNDQDGMLSAI 143 (276)
Q Consensus 126 nG~~~~~g~~~~~~~~~i 143 (276)
+|+. ..|.+.+.+.+.|
T Consensus 57 ~~~~-~~g~~~~~i~~~i 73 (74)
T TIGR02196 57 GHKI-IVGFDPEKLDQLL 73 (74)
T ss_pred CCEE-EeeCCHHHHHHHh
Confidence 9975 6666777776654
No 16
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.99 E-value=2e-05 Score=58.76 Aligned_cols=61 Identities=20% Similarity=0.263 Sum_probs=41.3
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceEEE
Q 023845 46 VELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQLVF 125 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~vV 125 (276)
|.+||+++||+|..|.++|.++.-.+ . -++++ .++ +.+..+.+..|..+ +|+++|
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~-----~----~~di~-----------~~~---~~~~~~~~~~g~~~--vP~i~i 55 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTF-----T----EIRVD-----------GDP---ALRDEMMQRSGRRT--VPQIFI 55 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCc-----E----EEEec-----------CCH---HHHHHHHHHhCCCC--cCEEEE
Confidence 57999999999999999999764322 1 12333 222 23344666666544 999999
Q ss_pred cCeEec
Q 023845 126 QGRVQC 131 (276)
Q Consensus 126 nG~~~~ 131 (276)
||+...
T Consensus 56 ~g~~ig 61 (79)
T TIGR02181 56 GDVHVG 61 (79)
T ss_pred CCEEEc
Confidence 997543
No 17
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.96 E-value=5.4e-05 Score=56.97 Aligned_cols=71 Identities=13% Similarity=0.223 Sum_probs=49.3
Q ss_pred EEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceEE
Q 023845 45 LVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQLV 124 (276)
Q Consensus 45 vVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~v 124 (276)
.|++|+ .+|++|..+...+.++.++++ .++.. +.||. ... +..+|+.+ +|.++
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~---~~~~~--~~v~~-----------------~~~--a~~~~v~~--vPti~ 54 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELG---IDAEF--EKVTD-----------------MNE--ILEAGVTA--TPGVA 54 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcC---CCeEE--EEeCC-----------------HHH--HHHcCCCc--CCEEE
Confidence 377777 999999999999999998752 23332 33331 111 56678877 99999
Q ss_pred EcCeEeccCC--ChhhHHHH
Q 023845 125 FQGRVQCQGN--DQDGMLSA 142 (276)
Q Consensus 125 VnG~~~~~g~--~~~~~~~~ 142 (276)
|||+....|. +.+.+.+.
T Consensus 55 i~G~~~~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 55 VDGELVIMGKIPSKEEIKEI 74 (76)
T ss_pred ECCEEEEEeccCCHHHHHHH
Confidence 9999988775 23455443
No 18
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.86 E-value=5.4e-05 Score=60.13 Aligned_cols=66 Identities=18% Similarity=0.202 Sum_probs=49.7
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceEEE
Q 023845 46 VELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQLVF 125 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~vV 125 (276)
|.+|+..+||.|-.|.++|.++.-.+ . .+.+| ..+...+.|+.+.+..|..+ +||++|
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~i~~-----~----~vdid-----------~~~~~~~~~~~l~~~tg~~t--vP~Vfi 67 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLGVNP-----A----VHEID-----------KEPAGKDIENALSRLGCSPA--VPAVFV 67 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCC-----E----EEEcC-----------CCccHHHHHHHHHHhcCCCC--cCeEEE
Confidence 67999999999999999999876532 1 13333 34555677788888888888 899999
Q ss_pred cCeEeccCC
Q 023845 126 QGRVQCQGN 134 (276)
Q Consensus 126 nG~~~~~g~ 134 (276)
||+ .++|.
T Consensus 68 ~g~-~iGG~ 75 (99)
T TIGR02189 68 GGK-LVGGL 75 (99)
T ss_pred CCE-EEcCH
Confidence 996 45554
No 19
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=6.2e-05 Score=57.65 Aligned_cols=71 Identities=23% Similarity=0.322 Sum_probs=47.6
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHh-CCCCCCcceEE
Q 023845 46 VELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEAL-NLDTMFTPQLV 124 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~-g~~~vYTPq~v 124 (276)
|++||-.+||.|-.|.++|.+..-.+ .. ++++ ..+-+++|. |.+.. |.++ +||++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~g~~~-----~~----i~~~------------~~~~~~~~~-~~~~~~g~~t--vP~I~ 58 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRKGVDY-----EE----IDVD------------DDEPEEARE-MVKRGKGQRT--VPQIF 58 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHcCCCc-----EE----EEec------------CCcHHHHHH-HHHHhCCCCC--cCEEE
Confidence 78999999999999999999765432 11 2222 111245544 44444 7888 99999
Q ss_pred EcCeEeccCCChhhHH
Q 023845 125 FQGRVQCQGNDQDGML 140 (276)
Q Consensus 125 VnG~~~~~g~~~~~~~ 140 (276)
|||+...++.+..++.
T Consensus 59 i~~~~igg~~d~~~~~ 74 (80)
T COG0695 59 IGGKHVGGCDDLDALE 74 (80)
T ss_pred ECCEEEeCcccHHHHH
Confidence 9998544444555554
No 20
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.76 E-value=0.00017 Score=53.03 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=21.5
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcc
Q 023845 46 VELFSSQGCKTSPEAEILVSRLGR 69 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~~ 69 (276)
|.+||..+||.|..|.++|.++.-
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~~i 26 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQENGI 26 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCC
Confidence 789999999999999999997543
No 21
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.73 E-value=0.0002 Score=54.02 Aligned_cols=68 Identities=21% Similarity=0.342 Sum_probs=44.0
Q ss_pred EEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceEE
Q 023845 45 LVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQLV 124 (276)
Q Consensus 45 vVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~v 124 (276)
-|+|||..+|+.|..|.++|.++.-.+ .. ++++- | .....+.+..|..+ +|+++
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~~gi~y-----~~----idi~~-------~--------~~~~~~~~~~g~~~--vP~i~ 62 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKEKGYDF-----EE----IPLGN-------D--------ARGRSLRAVTGATT--VPQVF 62 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHHcCCCc-----EE----EECCC-------C--------hHHHHHHHHHCCCC--cCeEE
Confidence 477999999999999999999765432 11 22321 1 11123445567777 99999
Q ss_pred EcCeEeccCCChhhHHH
Q 023845 125 FQGRVQCQGNDQDGMLS 141 (276)
Q Consensus 125 VnG~~~~~g~~~~~~~~ 141 (276)
|||+. +.|. +.+..
T Consensus 63 i~g~~-igG~--~~l~~ 76 (79)
T TIGR02190 63 IGGKL-IGGS--DELEA 76 (79)
T ss_pred ECCEE-EcCH--HHHHH
Confidence 99975 4443 44443
No 22
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.71 E-value=0.00015 Score=72.36 Aligned_cols=85 Identities=16% Similarity=0.246 Sum_probs=61.7
Q ss_pred hhcCCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCC
Q 023845 38 MRRGGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDT 117 (276)
Q Consensus 38 ~~~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~ 117 (276)
...++++-|++|.|.+||+||.|-..+.+|+.. .|+|.+-.+... +|- ..+.+++++
T Consensus 113 ~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~----~p~i~~~~id~~--------------~~~----~~~~~~~v~- 169 (515)
T TIGR03140 113 RRLNGPLHFETYVSLTCQNCPDVVQALNQMALL----NPNISHTMIDGA--------------LFQ----DEVEALGIQ- 169 (515)
T ss_pred HhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh----CCCceEEEEEch--------------hCH----HHHHhcCCc-
Confidence 344678999999999999999999999999986 357665553332 222 335666777
Q ss_pred CCcceEEEcCeEeccCCC-hhhHHHHHHcC
Q 023845 118 MFTPQLVFQGRVQCQGND-QDGMLSAIANA 146 (276)
Q Consensus 118 vYTPq~vVnG~~~~~g~~-~~~~~~~i~~~ 146 (276)
|+|+++|||.....|.. .+.+...+...
T Consensus 170 -~VP~~~i~~~~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 170 -GVPAVFLNGEEFHNGRMDLAELLEKLEET 198 (515)
T ss_pred -ccCEEEECCcEEEecCCCHHHHHHHHhhc
Confidence 59999999988777765 45565555543
No 23
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.67 E-value=0.00014 Score=54.02 Aligned_cols=74 Identities=23% Similarity=0.300 Sum_probs=47.0
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceEEE
Q 023845 46 VELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQLVF 125 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~vV 125 (276)
|-+|+..+||.|..+.++|.++...+ .. ++++ ..+...+.+..+.+..|..+ +|++++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~~-----~~----~~v~-----------~~~~~~~~~~~~~~~~g~~~--~P~v~~ 59 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVKP-----AV----VELD-----------QHEDGSEIQDYLQELTGQRT--VPNVFI 59 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCCc-----EE----EEEe-----------CCCChHHHHHHHHHHhCCCC--CCeEEE
Confidence 57999999999999999999987632 11 3333 11111233334455566666 999999
Q ss_pred cCeEeccCCChhhHHHHHH
Q 023845 126 QGRVQCQGNDQDGMLSAIA 144 (276)
Q Consensus 126 nG~~~~~g~~~~~~~~~i~ 144 (276)
||+. ++| .+.+..+.+
T Consensus 60 ~g~~-igg--~~~~~~~~~ 75 (82)
T cd03419 60 GGKF-IGG--CDDLMALHK 75 (82)
T ss_pred CCEE-EcC--HHHHHHHHH
Confidence 9975 443 344444443
No 24
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.67 E-value=0.00019 Score=71.63 Aligned_cols=83 Identities=17% Similarity=0.226 Sum_probs=61.3
Q ss_pred hcCCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCC
Q 023845 39 RRGGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTM 118 (276)
Q Consensus 39 ~~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~v 118 (276)
..++++-|++|.|.+||+||.|-..+.+|+.. .|+|..-.+... +| ...+..++++
T Consensus 113 ~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~----~~~i~~~~id~~--------------~~----~~~~~~~~v~-- 168 (517)
T PRK15317 113 ALDGDFHFETYVSLSCHNCPDVVQALNLMAVL----NPNITHTMIDGA--------------LF----QDEVEARNIM-- 168 (517)
T ss_pred hcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHh----CCCceEEEEEch--------------hC----HhHHHhcCCc--
Confidence 44578999999999999999999999999985 457765555433 12 2335566777
Q ss_pred CcceEEEcCeEeccCCC-hhhHHHHHHc
Q 023845 119 FTPQLVFQGRVQCQGND-QDGMLSAIAN 145 (276)
Q Consensus 119 YTPq~vVnG~~~~~g~~-~~~~~~~i~~ 145 (276)
|+|+++|||.....|.. .+.+...+.+
T Consensus 169 ~VP~~~i~~~~~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 169 AVPTVFLNGEEFGQGRMTLEEILAKLDT 196 (517)
T ss_pred ccCEEEECCcEEEecCCCHHHHHHHHhc
Confidence 49999999988777765 4455555554
No 25
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.61 E-value=0.00024 Score=52.64 Aligned_cols=76 Identities=21% Similarity=0.257 Sum_probs=45.8
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceEEE
Q 023845 46 VELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQLVF 125 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~vV 125 (276)
|.+|+..+||.|..+.++|.++.-. +.+.- +.|+ ..+...+-++...+..|..+ +|+++|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-----~~~~~--~~v~-----------~~~~~~~~~~~l~~~~g~~~--vP~v~i 60 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-----PAYEV--VELD-----------QLSNGSEIQDYLEEITGQRT--VPNIFI 60 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-----CCCEE--EEee-----------CCCChHHHHHHHHHHhCCCC--CCeEEE
Confidence 5689999999999999999998742 11211 2222 01111222233455567666 999999
Q ss_pred cCeEeccCCChhhHHHHHH
Q 023845 126 QGRVQCQGNDQDGMLSAIA 144 (276)
Q Consensus 126 nG~~~~~g~~~~~~~~~i~ 144 (276)
||+. +.| .+.+.+..+
T Consensus 61 ~g~~-igg--~~~~~~~~~ 76 (84)
T TIGR02180 61 NGKF-IGG--CSDLLALYK 76 (84)
T ss_pred CCEE-EcC--HHHHHHHHH
Confidence 9975 444 344444433
No 26
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.57 E-value=0.00026 Score=50.02 Aligned_cols=61 Identities=23% Similarity=0.312 Sum_probs=41.7
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceEEE
Q 023845 46 VELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQLVF 125 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~vV 125 (276)
|.+|++.+||.|..+..+|.++.-. +. .+|- ...+ +....+.+..|..+ .|++++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i~-------~~----~~di---------~~~~---~~~~~l~~~~~~~~--~P~~~~ 56 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGIE-------FE----EIDI---------LEDG---ELREELKELSGWPT--VPQIFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCc-------EE----EEEC---------CCCH---HHHHHHHHHhCCCC--cCEEEE
Confidence 6799999999999999999986421 11 1221 1222 24456666677666 899999
Q ss_pred cCeEec
Q 023845 126 QGRVQC 131 (276)
Q Consensus 126 nG~~~~ 131 (276)
||+...
T Consensus 57 ~~~~ig 62 (72)
T cd02066 57 NGEFIG 62 (72)
T ss_pred CCEEEe
Confidence 997543
No 27
>PHA03050 glutaredoxin; Provisional
Probab=97.52 E-value=0.00021 Score=57.88 Aligned_cols=69 Identities=12% Similarity=0.110 Sum_probs=45.3
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceEEE
Q 023845 46 VELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQLVF 125 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~vV 125 (276)
|++|+..+||.|-.|.++|.++.-++ +.+- -++++ ......+-|....+..|.++ +|+++|
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~----~~~~--~i~i~-----------~~~~~~~~~~~l~~~tG~~t--VP~IfI 75 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKR----GAYE--IVDIK-----------EFKPENELRDYFEQITGGRT--VPRIFF 75 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCc----CCcE--EEECC-----------CCCCCHHHHHHHHHHcCCCC--cCEEEE
Confidence 78999999999999999999886521 1100 12222 00112344566666677777 999999
Q ss_pred cCeEeccCC
Q 023845 126 QGRVQCQGN 134 (276)
Q Consensus 126 nG~~~~~g~ 134 (276)
||+. ++|.
T Consensus 76 ~g~~-iGG~ 83 (108)
T PHA03050 76 GKTS-IGGY 83 (108)
T ss_pred CCEE-EeCh
Confidence 9975 4443
No 28
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.45 E-value=0.00043 Score=51.04 Aligned_cols=60 Identities=18% Similarity=0.343 Sum_probs=40.1
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceEEE
Q 023845 46 VELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQLVF 125 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~vV 125 (276)
|.|||..+|++|-.|.++|.+..-.+ . -++++ ..+ +....+.+..+... +|+++|
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~gi~~-----~----~~di~-----------~~~---~~~~el~~~~g~~~--vP~v~i 57 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREKGLPY-----V----EINID-----------IFP---ERKAELEERTGSSV--VPQIFF 57 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHCCCce-----E----EEECC-----------CCH---HHHHHHHHHhCCCC--cCEEEE
Confidence 78999999999999999999864322 1 11221 222 33344555556555 799999
Q ss_pred cCeEe
Q 023845 126 QGRVQ 130 (276)
Q Consensus 126 nG~~~ 130 (276)
||+.+
T Consensus 58 ~~~~i 62 (73)
T cd03027 58 NEKLV 62 (73)
T ss_pred CCEEE
Confidence 99643
No 29
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.43 E-value=0.00076 Score=47.93 Aligned_cols=70 Identities=14% Similarity=0.253 Sum_probs=43.7
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceEEE
Q 023845 46 VELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQLVF 125 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~vV 125 (276)
|++|++.+|+.|-.+..+|.+..- .+. .+.++ .++ +....|.+..+... +|.+++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~i-------~~~--~~~i~-----------~~~---~~~~~~~~~~~~~~--vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERGI-------PFE--EVDVD-----------EDP---EALEELKKLNGYRS--VPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCCC-------CeE--EEeCC-----------CCH---HHHHHHHHHcCCcc--cCEEEE
Confidence 689999999999999999987432 111 12222 111 12233444445545 999999
Q ss_pred cCeEeccCCChhhHHH
Q 023845 126 QGRVQCQGNDQDGMLS 141 (276)
Q Consensus 126 nG~~~~~g~~~~~~~~ 141 (276)
+|+ ...|.+.+.+.+
T Consensus 57 ~~~-~i~g~~~~~l~~ 71 (73)
T cd02976 57 GDE-HLSGFRPDKLRA 71 (73)
T ss_pred CCE-EEecCCHHHHHh
Confidence 995 556666665544
No 30
>PRK10638 glutaredoxin 3; Provisional
Probab=97.38 E-value=0.00058 Score=51.77 Aligned_cols=61 Identities=18% Similarity=0.306 Sum_probs=43.3
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceEEE
Q 023845 46 VELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQLVF 125 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~vV 125 (276)
|++||+.+|++|-.|..+|.+..-.+ .+ +.|+ . ..+-+..|.+..|.++ +|++++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~gi~y-----~~----~dv~-----------~---~~~~~~~l~~~~g~~~--vP~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKGVSF-----QE----IPID-----------G---DAAKREEMIKRSGRTT--VPQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCCc-----EE----EECC-----------C---CHHHHHHHHHHhCCCC--cCEEEE
Confidence 78999999999999999999865432 11 2332 1 1223456777778777 899999
Q ss_pred cCeEec
Q 023845 126 QGRVQC 131 (276)
Q Consensus 126 nG~~~~ 131 (276)
||+...
T Consensus 59 ~g~~ig 64 (83)
T PRK10638 59 DAQHIG 64 (83)
T ss_pred CCEEEe
Confidence 997553
No 31
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.28 E-value=0.0013 Score=50.44 Aligned_cols=74 Identities=11% Similarity=0.108 Sum_probs=49.7
Q ss_pred EEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceEE
Q 023845 45 LVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQLV 124 (276)
Q Consensus 45 vVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~v 124 (276)
-|++||..+|+.|-.+.++|.+..=.+ -.++++ .+++..+ +.+..|..+ +|.++
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~---------~~idi~-----------~~~~~~~----~~~~~g~~~--vPvv~ 55 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDF---------EMINVD-----------RVPEAAE----TLRAQGFRQ--LPVVI 55 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCce---------EEEECC-----------CCHHHHH----HHHHcCCCC--cCEEE
Confidence 378999999999999999998743211 012222 2232222 233346666 89999
Q ss_pred EcCeEeccCCChhhHHHHHHc
Q 023845 125 FQGRVQCQGNDQDGMLSAIAN 145 (276)
Q Consensus 125 VnG~~~~~g~~~~~~~~~i~~ 145 (276)
+++. .+.|.+.++|.+++..
T Consensus 56 i~~~-~~~Gf~~~~l~~~~~~ 75 (81)
T PRK10329 56 AGDL-SWSGFRPDMINRLHPA 75 (81)
T ss_pred ECCE-EEecCCHHHHHHHHHh
Confidence 9995 5668889999887754
No 32
>PRK09381 trxA thioredoxin; Provisional
Probab=97.22 E-value=0.0019 Score=50.57 Aligned_cols=82 Identities=15% Similarity=0.302 Sum_probs=54.4
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCc
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFT 120 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYT 120 (276)
+++++|.+| +.+|+.|-.....|.+|++++ .+++....++++- +...++++++.+ +
T Consensus 21 ~~~vvv~f~-~~~C~~C~~~~p~~~~l~~~~---~~~~~~~~vd~~~------------------~~~~~~~~~v~~--~ 76 (109)
T PRK09381 21 DGAILVDFW-AEWCGPCKMIAPILDEIADEY---QGKLTVAKLNIDQ------------------NPGTAPKYGIRG--I 76 (109)
T ss_pred CCeEEEEEE-CCCCHHHHHHhHHHHHHHHHh---CCCcEEEEEECCC------------------ChhHHHhCCCCc--C
Confidence 556666655 559999999999999999876 3455555555441 123456788887 8
Q ss_pred ceEEE--cCeEec--cCC-ChhhHHHHHHcC
Q 023845 121 PQLVF--QGRVQC--QGN-DQDGMLSAIANA 146 (276)
Q Consensus 121 Pq~vV--nG~~~~--~g~-~~~~~~~~i~~~ 146 (276)
|++++ ||+... .|. +.+.+...|.+.
T Consensus 77 Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~ 107 (109)
T PRK09381 77 PTLLLFKNGEVAATKVGALSKGQLKEFLDAN 107 (109)
T ss_pred CEEEEEeCCeEEEEecCCCCHHHHHHHHHHh
Confidence 98766 787553 343 456666666553
No 33
>PHA02125 thioredoxin-like protein
Probab=97.17 E-value=0.0012 Score=49.18 Aligned_cols=60 Identities=17% Similarity=0.254 Sum_probs=43.2
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceEEE
Q 023845 46 VELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQLVF 125 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~vV 125 (276)
|=+|++.+|++|.....+|+++.-. -++|| .+.....++++++.+ +|+++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~~~-----------~~~vd----------------~~~~~~l~~~~~v~~--~PT~~- 51 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVEYT-----------YVDVD----------------TDEGVELTAKHHIRS--LPTLV- 51 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHhhe-----------EEeee----------------CCCCHHHHHHcCCce--eCeEE-
Confidence 4589999999999999999876321 14555 222357789999988 99987
Q ss_pred cCeE--eccCCC
Q 023845 126 QGRV--QCQGND 135 (276)
Q Consensus 126 nG~~--~~~g~~ 135 (276)
+|+. ...|.+
T Consensus 52 ~g~~~~~~~G~~ 63 (75)
T PHA02125 52 NTSTLDRFTGVP 63 (75)
T ss_pred CCEEEEEEeCCC
Confidence 7763 355653
No 34
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.10 E-value=0.0033 Score=45.61 Aligned_cols=24 Identities=13% Similarity=0.369 Sum_probs=21.9
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcc
Q 023845 46 VELFSSQGCKTSPEAEILVSRLGR 69 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~~ 69 (276)
|.||++.+|++|..+..+|.++.-
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~ 25 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGA 25 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCC
Confidence 679999999999999999998765
No 35
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=96.82 E-value=0.0058 Score=49.51 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=25.8
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHHhcccC
Q 023845 42 GAVLVELFSSQGCKTSPEAEILVSRLGRGD 71 (276)
Q Consensus 42 ~~vvVElFTSqGCssCP~Ad~~l~~l~~~~ 71 (276)
.++.|.+|++-.||+|-.....|.++..++
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~ 34 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKED 34 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence 457889999999999999999999987654
No 36
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=96.80 E-value=0.013 Score=47.20 Aligned_cols=77 Identities=22% Similarity=0.338 Sum_probs=49.8
Q ss_pred EEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceEE
Q 023845 45 LVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQLV 124 (276)
Q Consensus 45 vVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~v 124 (276)
+|=.|+.++|++|.....+|.+++.++ +.+-...+.+| ..+..++.+++.+ +|+++
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~----~~i~~~~vd~d------------------~~~~l~~~~~v~~--vPt~~ 80 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELS----DKLKLEIYDFD------------------EDKEKAEKYGVER--VPTTI 80 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhc----CceEEEEEeCC------------------cCHHHHHHcCCCc--CCEEE
Confidence 444478999999999999999998753 34333223232 1246788899988 89998
Q ss_pred Ec------CeEeccCCC-hhhHHHHHHc
Q 023845 125 FQ------GRVQCQGND-QDGMLSAIAN 145 (276)
Q Consensus 125 Vn------G~~~~~g~~-~~~~~~~i~~ 145 (276)
+- |...+.|.. ..++.+.|..
T Consensus 81 i~~~g~~~~~~~~~G~~~~~el~~~i~~ 108 (113)
T cd02975 81 FLQDGGKDGGIRYYGLPAGYEFASLIED 108 (113)
T ss_pred EEeCCeecceEEEEecCchHHHHHHHHH
Confidence 83 333444433 3455555543
No 37
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.011 Score=47.90 Aligned_cols=81 Identities=19% Similarity=0.185 Sum_probs=61.1
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcce
Q 023845 43 AVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQ 122 (276)
Q Consensus 43 ~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq 122 (276)
..+|=.||+.+|..|..-...+.+|+.+| ++++-|...||= =...++.+++..+.|=.
T Consensus 22 kliVvdF~a~wCgPCk~i~P~~~~La~~y----~~v~Flkvdvde------------------~~~~~~~~~V~~~PTf~ 79 (106)
T KOG0907|consen 22 KLVVVDFYATWCGPCKAIAPKFEKLAEKY----PDVVFLKVDVDE------------------LEEVAKEFNVKAMPTFV 79 (106)
T ss_pred CeEEEEEECCCCcchhhhhhHHHHHHHHC----CCCEEEEEeccc------------------CHhHHHhcCceEeeEEE
Confidence 34555679999999999999999999986 468888787772 24568889999944444
Q ss_pred EEEcCeEe--ccCCChhhHHHHHHc
Q 023845 123 LVFQGRVQ--CQGNDQDGMLSAIAN 145 (276)
Q Consensus 123 ~vVnG~~~--~~g~~~~~~~~~i~~ 145 (276)
|+.||+.. ++|.+..++...|..
T Consensus 80 f~k~g~~~~~~vGa~~~~l~~~i~~ 104 (106)
T KOG0907|consen 80 FYKGGEEVDEVVGANKAELEKKIAK 104 (106)
T ss_pred EEECCEEEEEEecCCHHHHHHHHHh
Confidence 66677654 478888877777654
No 38
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=96.71 E-value=0.0018 Score=53.46 Aligned_cols=100 Identities=13% Similarity=0.185 Sum_probs=63.3
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEee---------------------ecc-cC--------CC
Q 023845 43 AVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHV---------------------DYW-DY--------MG 92 (276)
Q Consensus 43 ~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hV---------------------dYW-Dy--------lG 92 (276)
++.|++|.+-.||+|-..+..|.++.+++.+ ..+|--.-.|+ .|| .. -.
T Consensus 13 ~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~-~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (162)
T PF13462_consen 13 PITVTEFFDFQCPHCAKFHEELEKLLKKYID-PGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQEN 91 (162)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCHS
T ss_pred CeEEEEEECCCCHhHHHHHHHHhhhhhhccC-CCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Confidence 6899999999999999999999888776421 23444444444 122 00 01
Q ss_pred CCCC-----------------CCCcc---ccHHHHHHHHHhCCCCCCcceEEEcCeEeccCCChhhHHHHHHc
Q 023845 93 WKDP-----------------YGSSQ---WTVRQKAYVEALNLDTMFTPQLVFQGRVQCQGNDQDGMLSAIAN 145 (276)
Q Consensus 93 WkD~-----------------fa~~~---~t~Rq~~Y~~~~g~~~vYTPq~vVnG~~~~~g~~~~~~~~~i~~ 145 (276)
|... +.+.. ..+.+..+.+..|+.+ ||+++|||+......+.++|..+|.+
T Consensus 92 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--tPt~~inG~~~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 92 FENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITG--TPTFFINGKYVVGPYTIEELKELIDK 162 (162)
T ss_dssp TSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SS--SSEEEETTCEEETTTSHHHHHHHHHH
T ss_pred cchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCcc--ccEEEECCEEeCCCCCHHHHHHHHcC
Confidence 1111 01111 2233456677778886 99999999998777788999888863
No 39
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=96.68 E-value=0.0079 Score=50.45 Aligned_cols=88 Identities=20% Similarity=0.303 Sum_probs=56.3
Q ss_pred hcCCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCC
Q 023845 39 RRGGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTM 118 (276)
Q Consensus 39 ~~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~v 118 (276)
..++++||+ |.+.+|+.|-.....|.+|.+++ .+.+-.+.+.+| .++-..+++++++..
T Consensus 18 ~~gk~vvV~-F~A~WC~~C~~~~p~l~~l~~~~---~~~~~~v~v~vd----------------~~~~~~~~~~~~V~~- 76 (142)
T cd02950 18 SNGKPTLVE-FYADWCTVCQEMAPDVAKLKQKY---GDQVNFVMLNVD----------------NPKWLPEIDRYRVDG- 76 (142)
T ss_pred hCCCEEEEE-EECCcCHHHHHhHHHHHHHHHHh---ccCeeEEEEEcC----------------CcccHHHHHHcCCCC-
Confidence 345566664 66789999999999999998765 234434444554 111134678889887
Q ss_pred CcceEE-E--cCeEe--ccCC-ChhhHHHHHHcCCC
Q 023845 119 FTPQLV-F--QGRVQ--CQGN-DQDGMLSAIANAPK 148 (276)
Q Consensus 119 YTPq~v-V--nG~~~--~~g~-~~~~~~~~i~~~~~ 148 (276)
+|+++ + ||+.. ..|. ..+.+...|++..+
T Consensus 77 -iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 77 -IPHFVFLDREGNEEGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred -CCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHHc
Confidence 89855 4 46544 2343 36667777776554
No 40
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.58 E-value=0.016 Score=52.68 Aligned_cols=99 Identities=13% Similarity=0.182 Sum_probs=65.7
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEee------------ecccC----CCCC-----CCCCC-
Q 023845 42 GAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHV------------DYWDY----MGWK-----DPYGS- 99 (276)
Q Consensus 42 ~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hV------------dYWDy----lGWk-----D~fa~- 99 (276)
....|=+||.-.|++|=.++..|.++.+. .-.|.-+.|.. ..|=. --|. +....
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~~~~~----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKDYNAL----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHhcC----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 34567779999999999999999988652 22444444443 12310 0011 11111
Q ss_pred --ccccHHHHHHHHHhCCCCCCcceEEE-cCeEeccCCChhhHHHHHHcC
Q 023845 100 --SQWTVRQKAYVEALNLDTMFTPQLVF-QGRVQCQGNDQDGMLSAIANA 146 (276)
Q Consensus 100 --~~~t~Rq~~Y~~~~g~~~vYTPq~vV-nG~~~~~g~~~~~~~~~i~~~ 146 (276)
..-.++++.+++++|++. ||.+|+ ||+...+.-+.+.+...|.+.
T Consensus 183 ~c~~~v~~~~~la~~lgi~g--TPtiv~~~G~~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQG--TPAIVLSNGTLVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHHhHHHHHHcCCcc--ccEEEEcCCeEeeCCCCHHHHHHHHHHc
Confidence 124578899999999999 999999 998665444678888888764
No 41
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=96.56 E-value=0.027 Score=44.19 Aligned_cols=82 Identities=18% Similarity=0.239 Sum_probs=55.9
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCc
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFT 120 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYT 120 (276)
++++||+ |.+.+|+.|-.-...|.+|++++ +++.-+.+.+|- ..-.+.+++++++.. +
T Consensus 15 ~k~vvv~-F~a~wC~~C~~~~p~l~~la~~~----~~v~~~~vd~d~---------------~~~~~~l~~~~~V~~--~ 72 (103)
T cd02985 15 GRLVVLE-FALKHSGPSVKIYPTMVKLSRTC----NDVVFLLVNGDE---------------NDSTMELCRREKIIE--V 72 (103)
T ss_pred CCEEEEE-EECCCCHhHHHHhHHHHHHHHHC----CCCEEEEEECCC---------------ChHHHHHHHHcCCCc--C
Confidence 4455554 66779999999999999998864 456555555541 112346788899988 7
Q ss_pred ceEEE--cCeEe--ccCCChhhHHHHHH
Q 023845 121 PQLVF--QGRVQ--CQGNDQDGMLSAIA 144 (276)
Q Consensus 121 Pq~vV--nG~~~--~~g~~~~~~~~~i~ 144 (276)
|++++ ||+.. ..|.+..++.+.|.
T Consensus 73 Pt~~~~~~G~~v~~~~G~~~~~l~~~~~ 100 (103)
T cd02985 73 PHFLFYKDGEKIHEEEGIGPDELIGDVL 100 (103)
T ss_pred CEEEEEeCCeEEEEEeCCCHHHHHHHHH
Confidence 87665 77643 46777777766654
No 42
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=96.46 E-value=0.011 Score=47.75 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=46.8
Q ss_pred cCCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCC
Q 023845 40 RGGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLD 116 (276)
Q Consensus 40 ~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~ 116 (276)
..+++||..|+ -+|+.|...-..|.+|.+++. ..++..++++++. |......+-.++|+++.++.
T Consensus 22 ~gk~vvl~F~a-~~C~~C~~~~p~l~~l~~~~~--~~~~~vi~i~~~~---------~~~~~~~~~~~~~~~~~~~~ 86 (126)
T cd03012 22 RGKVVLLDFWT-YCCINCLHTLPYLTDLEQKYK--DDGLVVIGVHSPE---------FAFERDLANVKSAVLRYGIT 86 (126)
T ss_pred CCCEEEEEEEC-CCCccHHHHHHHHHHHHHHcC--cCCeEEEEeccCc---------cccccCHHHHHHHHHHcCCC
Confidence 34677777775 599999999999999988774 3578888888752 22223355667788888764
No 43
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=96.45 E-value=0.021 Score=50.77 Aligned_cols=83 Identities=20% Similarity=0.351 Sum_probs=56.9
Q ss_pred CceEEEEecC---CCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCC
Q 023845 42 GAVLVELFSS---QGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTM 118 (276)
Q Consensus 42 ~~vvVElFTS---qGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~v 118 (276)
..+.|=+|++ ++|++|......|.++++++ +++-..-+.+| .+..+.+++.+++..
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~----~~~~i~~v~vd----------------~~~~~~l~~~~~V~~- 77 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVS----PKLKLEIYDFD----------------TPEDKEEAEKYGVER- 77 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhC----CCceEEEEecC----------------CcccHHHHHHcCCCc-
Confidence 3455666888 99999999999999999875 34433445555 334568899999999
Q ss_pred CcceEEE--cCeEe---ccCC-ChhhHHHHHHcC
Q 023845 119 FTPQLVF--QGRVQ---CQGN-DQDGMLSAIANA 146 (276)
Q Consensus 119 YTPq~vV--nG~~~---~~g~-~~~~~~~~i~~~ 146 (276)
+|++++ ||+.. +.|. +...+...|...
T Consensus 78 -~Pt~~~f~~g~~~~~~~~G~~~~~~l~~~i~~~ 110 (215)
T TIGR02187 78 -VPTTIILEEGKDGGIRYTGIPAGYEFAALIEDI 110 (215)
T ss_pred -cCEEEEEeCCeeeEEEEeecCCHHHHHHHHHHH
Confidence 999877 55543 2343 244555555544
No 44
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=96.36 E-value=0.015 Score=45.92 Aligned_cols=57 Identities=23% Similarity=0.198 Sum_probs=35.1
Q ss_pred CCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceEEEcCeEec
Q 023845 52 QGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQLVFQGRVQC 131 (276)
Q Consensus 52 qGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~vVnG~~~~ 131 (276)
.+||.|-.|.++|.++.-.+ . .+.+ ..++ +-+....+..|..+ +||++|||+ .+
T Consensus 25 ~~Cp~C~~ak~lL~~~~i~~-------~--~~di-----------~~~~---~~~~~l~~~tg~~t--vP~vfi~g~-~i 78 (97)
T TIGR00365 25 PQCGFSARAVQILKACGVPF-------A--YVNV-----------LEDP---EIRQGIKEYSNWPT--IPQLYVKGE-FV 78 (97)
T ss_pred CCCchHHHHHHHHHHcCCCE-------E--EEEC-----------CCCH---HHHHHHHHHhCCCC--CCEEEECCE-EE
Confidence 77888889999999864421 1 1111 1222 23344445566666 999999997 45
Q ss_pred cCC
Q 023845 132 QGN 134 (276)
Q Consensus 132 ~g~ 134 (276)
+|.
T Consensus 79 GG~ 81 (97)
T TIGR00365 79 GGC 81 (97)
T ss_pred eCh
Confidence 543
No 45
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=96.26 E-value=0.031 Score=40.39 Aligned_cols=61 Identities=18% Similarity=0.270 Sum_probs=43.7
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceE
Q 023845 44 VLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQL 123 (276)
Q Consensus 44 vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~ 123 (276)
.++=+|++.+|+.|-...+.|.++.++ .+++..+.+..+- .....+.+++.. +|++
T Consensus 12 ~~ll~~~~~~C~~C~~~~~~~~~~~~~----~~~~~~~~i~~~~------------------~~~~~~~~~v~~--~P~~ 67 (93)
T cd02947 12 PVVVDFWAPWCGPCKAIAPVLEELAEE----YPKVKFVKVDVDE------------------NPELAEEYGVRS--IPTF 67 (93)
T ss_pred cEEEEEECCCChhHHHhhHHHHHHHHH----CCCceEEEEECCC------------------ChhHHHhcCccc--ccEE
Confidence 345566778999999999999999875 3466655555441 244567788877 9997
Q ss_pred EE--cCe
Q 023845 124 VF--QGR 128 (276)
Q Consensus 124 vV--nG~ 128 (276)
++ +|+
T Consensus 68 ~~~~~g~ 74 (93)
T cd02947 68 LFFKNGK 74 (93)
T ss_pred EEEECCE
Confidence 77 665
No 46
>PRK10824 glutaredoxin-4; Provisional
Probab=96.20 E-value=0.018 Score=47.48 Aligned_cols=57 Identities=21% Similarity=0.162 Sum_probs=38.7
Q ss_pred CCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceEEEcCeEec
Q 023845 52 QGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQLVFQGRVQC 131 (276)
Q Consensus 52 qGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~vVnG~~~~ 131 (276)
..|+.|-.|.++|.++.-.+ .+ ++++ .+ .+.|....+.-|.++ +||++|||+ ++
T Consensus 28 p~Cpyc~~ak~lL~~~~i~~-----~~----idi~-----------~d---~~~~~~l~~~sg~~T--VPQIFI~G~-~I 81 (115)
T PRK10824 28 PSCGFSAQAVQALSACGERF-----AY----VDIL-----------QN---PDIRAELPKYANWPT--FPQLWVDGE-LV 81 (115)
T ss_pred CCCchHHHHHHHHHHcCCCc-----eE----EEec-----------CC---HHHHHHHHHHhCCCC--CCeEEECCE-EE
Confidence 38999999999999986532 11 2222 12 245555556667777 999999996 56
Q ss_pred cCC
Q 023845 132 QGN 134 (276)
Q Consensus 132 ~g~ 134 (276)
+|.
T Consensus 82 GG~ 84 (115)
T PRK10824 82 GGC 84 (115)
T ss_pred cCh
Confidence 665
No 47
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.11 E-value=0.023 Score=43.17 Aligned_cols=72 Identities=17% Similarity=0.333 Sum_probs=47.4
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceEEE
Q 023845 46 VELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQLVF 125 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~vV 125 (276)
|-|||.+||+.|-.|...|.++.... . |.+..-|-. .++ .+.++++. -.|.+.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~-----~-----~~l~~vDI~------~d~-------~l~~~Y~~---~IPVl~~ 55 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF-----P-----FELEEVDID------EDP-------ELFEKYGY---RIPVLHI 55 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS-----T-----CEEEEEETT------TTH-------HHHHHSCT---STSEEEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc-----C-----ceEEEEECC------CCH-------HHHHHhcC---CCCEEEE
Confidence 56999999999999999999987643 3 333333321 222 25567774 3899999
Q ss_pred cC------eEeccCC-ChhhHHHHH
Q 023845 126 QG------RVQCQGN-DQDGMLSAI 143 (276)
Q Consensus 126 nG------~~~~~g~-~~~~~~~~i 143 (276)
+| .....|. +.+.+.+.|
T Consensus 56 ~~~~~~~~~~~~~~~~d~~~L~~~L 80 (81)
T PF05768_consen 56 DGIRQFKEQEELKWRFDEEQLRAWL 80 (81)
T ss_dssp TT-GGGCTSEEEESSB-HHHHHHHH
T ss_pred cCcccccccceeCCCCCHHHHHHHh
Confidence 99 6665554 456666554
No 48
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=96.06 E-value=0.012 Score=48.54 Aligned_cols=71 Identities=18% Similarity=0.317 Sum_probs=50.4
Q ss_pred CCceEEEEecC------CCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhC
Q 023845 41 GGAVLVELFSS------QGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALN 114 (276)
Q Consensus 41 ~~~vvVElFTS------qGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g 114 (276)
+++++|..|.| ..|+.|-.+...|+++.+++ .+++..+-.+|| +.-.|+|+- ..|+.+++
T Consensus 21 ~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~---~~~v~fv~Vdvd--~~~~w~d~~---------~~~~~~~~ 86 (119)
T cd02952 21 GKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAA---PEDCVFIYCDVG--DRPYWRDPN---------NPFRTDPK 86 (119)
T ss_pred CCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHC---CCCCEEEEEEcC--CcccccCcc---------hhhHhccC
Confidence 45788887776 99999999999999999875 335666666655 233466552 46677888
Q ss_pred CCCCCcceEEEc
Q 023845 115 LDTMFTPQLVFQ 126 (276)
Q Consensus 115 ~~~vYTPq~vVn 126 (276)
+. -+.|++++=
T Consensus 87 I~-~~iPT~~~~ 97 (119)
T cd02952 87 LT-TGVPTLLRW 97 (119)
T ss_pred cc-cCCCEEEEE
Confidence 87 248886653
No 49
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=95.99 E-value=0.02 Score=44.06 Aligned_cols=67 Identities=15% Similarity=0.273 Sum_probs=47.6
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCc
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFT 120 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYT 120 (276)
...+++-+|.+.+|+.|-.....|.++.++. .+++..+.+.+| .+.....++++.. +
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~---~~~v~~~~id~d------------------~~~~l~~~~~v~~--v 68 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEF---DGAVHFVEIDID------------------EDQEIAEAAGIMG--T 68 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHh---CCceEEEEEECC------------------CCHHHHHHCCCee--c
Confidence 3457788999999999999999999998764 345655555543 1234577888876 8
Q ss_pred ceEEE--cCeEe
Q 023845 121 PQLVF--QGRVQ 130 (276)
Q Consensus 121 Pq~vV--nG~~~ 130 (276)
|.+++ ||+..
T Consensus 69 Pt~~i~~~g~~v 80 (97)
T cd02949 69 PTVQFFKDKELV 80 (97)
T ss_pred cEEEEEECCeEE
Confidence 87544 56544
No 50
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=95.96 E-value=0.036 Score=46.48 Aligned_cols=31 Identities=23% Similarity=0.176 Sum_probs=26.6
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccC
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGD 71 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~ 71 (276)
+.++.|-.|++-.||+|-..+..+.++.+++
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~ 44 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKL 44 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhC
Confidence 4567888899999999999999999887764
No 51
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=95.91 E-value=0.027 Score=42.75 Aligned_cols=65 Identities=17% Similarity=0.235 Sum_probs=45.1
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCc
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFT 120 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYT 120 (276)
++++||++| +.+|+.|-.....|.++.... .+.+..+...++ .....++++++.+ +
T Consensus 12 ~~~vlv~f~-a~wC~~C~~~~~~~~~~~~~~---~~~~~~~~vd~~------------------~~~~l~~~~~i~~--~ 67 (96)
T cd02956 12 QVPVVVDFW-APRSPPSKELLPLLERLAEEY---QGQFVLAKVNCD------------------AQPQIAQQFGVQA--L 67 (96)
T ss_pred CCeEEEEEE-CCCChHHHHHHHHHHHHHHHh---CCcEEEEEEecc------------------CCHHHHHHcCCCC--C
Confidence 346666655 589999999999999999765 334555555443 2246788899988 8
Q ss_pred ceEE--EcCeE
Q 023845 121 PQLV--FQGRV 129 (276)
Q Consensus 121 Pq~v--VnG~~ 129 (276)
|+++ -||+.
T Consensus 68 Pt~~~~~~g~~ 78 (96)
T cd02956 68 PTVYLFAAGQP 78 (96)
T ss_pred CEEEEEeCCEE
Confidence 8855 45654
No 52
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=95.90 E-value=0.024 Score=45.55 Aligned_cols=94 Identities=17% Similarity=0.211 Sum_probs=52.8
Q ss_pred CceEEEEecCCCCCCCHHHHHHHH---HhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCC
Q 023845 42 GAVLVELFSSQGCKTSPEAEILVS---RLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTM 118 (276)
Q Consensus 42 ~~vvVElFTSqGCssCP~Ad~~l~---~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~v 118 (276)
+++|| .|.+.+|+.|-..+..+. ++.+.. .++++.+.+.+|- +.--+ | |.... ...+..+.++++..
T Consensus 15 k~vlv-~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~~~~i~~d~-~~~~~-~-~~~~~--~~~~~l~~~~~v~~- 84 (125)
T cd02951 15 KPLLL-LFSQPGCPYCDKLKRDYLNDPAVQAYI---RAHFVVVYINIDG-DKEVT-D-FDGEA--LSEKELARKYRVRF- 84 (125)
T ss_pred CcEEE-EEeCCCCHHHHHHHHHhcCcHHHHHHH---HhheEEEEEEccC-Cceee-c-cCCCC--ccHHHHHHHcCCcc-
Confidence 55666 778999999998887664 344332 2467777777652 00000 0 21111 12456788888876
Q ss_pred Ccce-EEEcCe---Ee--ccC-CChhhHHHHHHcC
Q 023845 119 FTPQ-LVFQGR---VQ--CQG-NDQDGMLSAIANA 146 (276)
Q Consensus 119 YTPq-~vVnG~---~~--~~g-~~~~~~~~~i~~~ 146 (276)
+|+ +++|.. .. ..| .+.+.+.+.|+..
T Consensus 85 -~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~ 118 (125)
T cd02951 85 -TPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYV 118 (125)
T ss_pred -ccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHH
Confidence 999 455542 21 233 3356666666554
No 53
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=95.78 E-value=0.046 Score=44.06 Aligned_cols=88 Identities=13% Similarity=0.144 Sum_probs=49.4
Q ss_pred cCCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeec--------ccCCCCCCCCCCccccHHHHHHHH
Q 023845 40 RGGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDY--------WDYMGWKDPYGSSQWTVRQKAYVE 111 (276)
Q Consensus 40 ~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdY--------WDylGWkD~fa~~~~t~Rq~~Y~~ 111 (276)
.++++||.+|+ ..|+.|-.-...|.++.++.....+++..+.+++|. ...++|. .+.-.. .+.....++
T Consensus 17 ~gk~vll~Fwa-~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~ 93 (131)
T cd03009 17 EGKTVGLYFSA-SWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWL-AVPFSD-RERRSRLNR 93 (131)
T ss_pred CCcEEEEEEEC-CCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCee-EcccCC-HHHHHHHHH
Confidence 34577777665 699999988888877765432112356666666662 1112221 011011 233456677
Q ss_pred HhCCCCCCcce-EEEcCeEecc
Q 023845 112 ALNLDTMFTPQ-LVFQGRVQCQ 132 (276)
Q Consensus 112 ~~g~~~vYTPq-~vVnG~~~~~ 132 (276)
.+++.. +|. ++||.....+
T Consensus 94 ~~~v~~--~P~~~lid~~G~i~ 113 (131)
T cd03009 94 TFKIEG--IPTLIILDADGEVV 113 (131)
T ss_pred HcCCCC--CCEEEEECCCCCEE
Confidence 888876 787 5665443344
No 54
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=95.75 E-value=0.012 Score=57.88 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=22.5
Q ss_pred EEEEecCCCCCCCHHHHHHHHHhcc
Q 023845 45 LVELFSSQGCKTSPEAEILVSRLGR 69 (276)
Q Consensus 45 vVElFTSqGCssCP~Ad~~l~~l~~ 69 (276)
-|++||..+||.|-.|.++|.+..-
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~~gi 27 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGANDI 27 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCC
Confidence 4889999999999999999998654
No 55
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=95.74 E-value=0.023 Score=50.33 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=28.9
Q ss_pred ceEEEEecCCCCCCCHHHHHHH---HHhcccCCCCCCCEEEEEEeeec
Q 023845 43 AVLVELFSSQGCKTSPEAEILV---SRLGRGDFELGVPVIVLAYHVDY 87 (276)
Q Consensus 43 ~vvVElFTSqGCssCP~Ad~~l---~~l~~~~~~~~~~VIaLa~hVdY 87 (276)
+-||| |.|=+||+|-..+..| ..+.+.. .++|.-.-+|+.+
T Consensus 39 ~~VvE-ffdy~CphC~~~~~~l~~~~~~~~~~---~~~v~~~~~~~~f 82 (207)
T PRK10954 39 PQVLE-FFSFYCPHCYQFEEVYHVSDNVKKKL---PEGTKMTKYHVEF 82 (207)
T ss_pred CeEEE-EeCCCCccHHHhcccccchHHHHHhC---CCCCeEEEecccc
Confidence 44555 8899999999988765 6666654 3466555667754
No 56
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=95.70 E-value=0.046 Score=42.24 Aligned_cols=33 Identities=27% Similarity=0.280 Sum_probs=20.6
Q ss_pred HHHHHHHHhCCCCCCcceEEEcCeEeccCCChhhHHHH
Q 023845 105 RQKAYVEALNLDTMFTPQLVFQGRVQCQGNDQDGMLSA 142 (276)
Q Consensus 105 Rq~~Y~~~~g~~~vYTPq~vVnG~~~~~g~~~~~~~~~ 142 (276)
-+....+..|..+ +|+++|||+. ++|. +.+.++
T Consensus 51 ~~~~l~~~~g~~t--vP~vfi~g~~-iGG~--~~l~~l 83 (90)
T cd03028 51 VRQGLKEYSNWPT--FPQLYVNGEL-VGGC--DIVKEM 83 (90)
T ss_pred HHHHHHHHhCCCC--CCEEEECCEE-EeCH--HHHHHH
Confidence 3444455567777 8999999974 4443 444443
No 57
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=95.49 E-value=0.03 Score=41.20 Aligned_cols=77 Identities=19% Similarity=0.101 Sum_probs=46.9
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCc------------cccH--HHHHHHH
Q 023845 46 VELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSS------------QWTV--RQKAYVE 111 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~------------~~t~--Rq~~Y~~ 111 (276)
|++|++-.||+|=.+.+.|.++.... .+++...-.|+..-....+....+.. ++.+ ++...++
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYAD---DGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALAR 77 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhc---CCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 57899999999999999999985322 34665555555432210000000000 0000 3455677
Q ss_pred HhCCCCCCcceEEEcC
Q 023845 112 ALNLDTMFTPQLVFQG 127 (276)
Q Consensus 112 ~~g~~~vYTPq~vVnG 127 (276)
.+|+.+ ||.++|||
T Consensus 78 ~~g~~g--~Pt~v~~~ 91 (98)
T cd02972 78 ALGVTG--TPTFVVNG 91 (98)
T ss_pred HcCCCC--CCEEEECC
Confidence 778866 99999999
No 58
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=95.44 E-value=0.044 Score=42.69 Aligned_cols=77 Identities=19% Similarity=0.217 Sum_probs=41.0
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHH---hcccCCCCCCCEEEEEEeeecccCC----CCCCCCCCccccHHHHHHHHHhCC
Q 023845 43 AVLVELFSSQGCKTSPEAEILVSR---LGRGDFELGVPVIVLAYHVDYWDYM----GWKDPYGSSQWTVRQKAYVEALNL 115 (276)
Q Consensus 43 ~vvVElFTSqGCssCP~Ad~~l~~---l~~~~~~~~~~VIaLa~hVdYWDyl----GWkD~fa~~~~t~Rq~~Y~~~~g~ 115 (276)
..+|=+|++.+|+.|=...+.|.+ +.... .+++..+.+.++ +.- -|.|.-..+....-.+..++.+|+
T Consensus 6 k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 6 KPIVVVFTDPWCPYCKKLEKELFPDNDVARYL---KDDFQVIFVNID--DSRDESEAVLDFDGQKNVRLSNKELAQRYGV 80 (112)
T ss_dssp SEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEE---HCECEEEECESH--SHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHh---hcCeEEEEEecC--CcccccccccccccchhhhHHHHHHHHHcCC
Confidence 355567899999999998888875 33322 234444444443 211 022211111122334578899998
Q ss_pred CCCCcceEEEc
Q 023845 116 DTMFTPQLVFQ 126 (276)
Q Consensus 116 ~~vYTPq~vVn 126 (276)
.. ||.+++-
T Consensus 81 ~g--tPt~~~~ 89 (112)
T PF13098_consen 81 NG--TPTIVFL 89 (112)
T ss_dssp -S--SSEEEEC
T ss_pred Cc--cCEEEEE
Confidence 88 9997764
No 59
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=95.37 E-value=0.055 Score=45.87 Aligned_cols=101 Identities=20% Similarity=0.270 Sum_probs=62.2
Q ss_pred cCCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecc---------------cCCCCCCCCCCccccH
Q 023845 40 RGGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYW---------------DYMGWKDPYGSSQWTV 104 (276)
Q Consensus 40 ~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYW---------------DylGWkD~fa~~~~t~ 104 (276)
.++++||..| +.+|+.|...-..|.+|.+++. ..+|..+++.+|-. +..+++.++ ..+
T Consensus 24 ~~k~~ll~f~-~t~Cp~c~~~~~~l~~l~~~~~--~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~----l~D 96 (171)
T cd02969 24 DGKALVVMFI-CNHCPYVKAIEDRLNRLAKEYG--AKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPY----LLD 96 (171)
T ss_pred CCCEEEEEEE-CCCCccHHHHHHHHHHHHHHHh--hCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceE----EEC
Confidence 4567777777 6799999888888888887653 24677777766532 223333222 233
Q ss_pred HHHHHHHHhCCCCCCcce-EEEc--CeEeccCC------------ChhhHHHHHHcCCCC
Q 023845 105 RQKAYVEALNLDTMFTPQ-LVFQ--GRVQCQGN------------DQDGMLSAIANAPKF 149 (276)
Q Consensus 105 Rq~~Y~~~~g~~~vYTPq-~vVn--G~~~~~g~------------~~~~~~~~i~~~~~~ 149 (276)
..+...+.+|+.. +|. ++|| |+....+. +...+.++|++.+..
T Consensus 97 ~~~~~~~~~~v~~--~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 154 (171)
T cd02969 97 ETQEVAKAYGAAC--TPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAG 154 (171)
T ss_pred CchHHHHHcCCCc--CCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcC
Confidence 4456777888765 786 7775 44433320 125577777766543
No 60
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=95.24 E-value=0.064 Score=41.53 Aligned_cols=67 Identities=19% Similarity=0.262 Sum_probs=41.8
Q ss_pred hcCCceEEEEecCCCCCCCHHHHHHH---HHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCC
Q 023845 39 RRGGAVLVELFSSQGCKTSPEAEILV---SRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNL 115 (276)
Q Consensus 39 ~~~~~vvVElFTSqGCssCP~Ad~~l---~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~ 115 (276)
..++++|| .|++.+|+.|-.....+ .++.+.. .+++..+..+++- | ..--..+.+++++
T Consensus 9 ~~~k~vlv-~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~~~~vd~~~-------~-------~~~~~~~~~~~~i 70 (104)
T cd02953 9 AQGKPVFV-DFTADWCVTCKVNEKVVFSDPEVQAAL---KKDVVLLRADWTK-------N-------DPEITALLKRFGV 70 (104)
T ss_pred HcCCeEEE-EEEcchhHHHHHHHHHhcCCHHHHHHH---hCCeEEEEEecCC-------C-------CHHHHHHHHHcCC
Confidence 34456666 67789999998877665 4555543 2366666655431 0 1112467888998
Q ss_pred CCCCcceEEE
Q 023845 116 DTMFTPQLVF 125 (276)
Q Consensus 116 ~~vYTPq~vV 125 (276)
.+ +|+++|
T Consensus 71 ~~--~Pti~~ 78 (104)
T cd02953 71 FG--PPTYLF 78 (104)
T ss_pred CC--CCEEEE
Confidence 87 898544
No 61
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=95.08 E-value=0.15 Score=40.55 Aligned_cols=80 Identities=11% Similarity=0.140 Sum_probs=50.5
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcce
Q 023845 43 AVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQ 122 (276)
Q Consensus 43 ~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq 122 (276)
.++|=.|.+.+|+.|=.....+.++.++.. ..++..+.+.+| -+...++++++.+ +|+
T Consensus 25 ~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~--~~~v~~~~vd~d------------------~~~~l~~~~~V~~--~Pt 82 (111)
T cd02963 25 KPYLIKITSDWCFSCIHIEPVWKEVIQELE--PLGVGIATVNAG------------------HERRLARKLGAHS--VPA 82 (111)
T ss_pred CeEEEEEECCccHhHHHhhHHHHHHHHHHH--hcCceEEEEecc------------------ccHHHHHHcCCcc--CCE
Confidence 345556778999999888888888877642 124555555444 1234578899988 887
Q ss_pred EE--EcCeEec--cC-CChhhHHHHHH
Q 023845 123 LV--FQGRVQC--QG-NDQDGMLSAIA 144 (276)
Q Consensus 123 ~v--VnG~~~~--~g-~~~~~~~~~i~ 144 (276)
++ -||+... .| .+.+.+.+.|+
T Consensus 83 ~~i~~~g~~~~~~~G~~~~~~l~~~i~ 109 (111)
T cd02963 83 IVGIINGQVTFYHDSSFTKQHVVDFVR 109 (111)
T ss_pred EEEEECCEEEEEecCCCCHHHHHHHHh
Confidence 55 6776653 33 23555555554
No 62
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=94.97 E-value=0.097 Score=41.61 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=44.9
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcc
Q 023845 42 GAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTP 121 (276)
Q Consensus 42 ~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTP 121 (276)
+++|| .|.+.+|+.|-.-+..|.+|++++ +++.-+ .|| .+.+ ..++++++.+ +|
T Consensus 25 ~~vvv-~F~a~~c~~C~~l~~~l~~la~~~----~~v~f~--~vd----------------~~~~-~l~~~~~i~~--~P 78 (113)
T cd02957 25 TRVVV-HFYEPGFPRCKILDSHLEELAAKY----PETKFV--KIN----------------AEKA-FLVNYLDIKV--LP 78 (113)
T ss_pred CEEEE-EEeCCCCCcHHHHHHHHHHHHHHC----CCcEEE--EEE----------------chhh-HHHHhcCCCc--CC
Confidence 45555 788899999999999999999875 344333 444 2223 6788899998 77
Q ss_pred eE--EEcCeEe
Q 023845 122 QL--VFQGRVQ 130 (276)
Q Consensus 122 q~--vVnG~~~ 130 (276)
++ +-||+..
T Consensus 79 t~~~f~~G~~v 89 (113)
T cd02957 79 TLLVYKNGELI 89 (113)
T ss_pred EEEEEECCEEE
Confidence 64 4577664
No 63
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=94.96 E-value=0.06 Score=41.62 Aligned_cols=63 Identities=19% Similarity=0.172 Sum_probs=41.6
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCc
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFT 120 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYT 120 (276)
++++||. |.+.+|++|-.....+.+++++. .+.+....+.++ .+......+++++.+ +
T Consensus 18 ~~~~lv~-f~a~wC~~C~~~~~~~~~~a~~~---~~~~~~~~v~~~----------------~~~~~~~~~~~~i~~--~ 75 (109)
T cd03002 18 NYTTLVE-FYAPWCGHCKNLKPEYAKAAKEL---DGLVQVAAVDCD----------------EDKNKPLCGKYGVQG--F 75 (109)
T ss_pred CCeEEEE-EECCCCHHHHhhChHHHHHHHHh---cCCceEEEEecC----------------ccccHHHHHHcCCCc--C
Confidence 3445555 55579999999989999998764 234444444443 112356778899888 8
Q ss_pred ceEEE
Q 023845 121 PQLVF 125 (276)
Q Consensus 121 Pq~vV 125 (276)
|++++
T Consensus 76 Pt~~~ 80 (109)
T cd03002 76 PTLKV 80 (109)
T ss_pred CEEEE
Confidence 98664
No 64
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=94.93 E-value=0.039 Score=47.30 Aligned_cols=42 Identities=12% Similarity=0.012 Sum_probs=30.9
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeee
Q 023845 42 GAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVD 86 (276)
Q Consensus 42 ~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVd 86 (276)
.++||+.|++ +|+.|=.....|.+|++++. .+++..+.+.+|
T Consensus 48 ~~vvV~Fya~-wC~~Ck~l~p~l~~la~~~~--~~~v~f~~VDvd 89 (152)
T cd02962 48 VTWLVEFFTT-WSPECVNFAPVFAELSLKYN--NNNLKFGKIDIG 89 (152)
T ss_pred CEEEEEEECC-CCHHHHHHHHHHHHHHHHcc--cCCeEEEEEECC
Confidence 4566665555 99999999999999998652 245777776665
No 65
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=94.90 E-value=0.055 Score=40.96 Aligned_cols=42 Identities=12% Similarity=0.034 Sum_probs=32.4
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeee
Q 023845 44 VLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVD 86 (276)
Q Consensus 44 vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVd 86 (276)
+++=.|.|.+|++|-..-..|.+|.+++.+ .++|..|+++.|
T Consensus 3 ~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d 44 (95)
T PF13905_consen 3 PVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLD 44 (95)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-S
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeC
Confidence 455578888999999999999999988743 468888888876
No 66
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=94.87 E-value=0.022 Score=45.58 Aligned_cols=30 Identities=20% Similarity=0.399 Sum_probs=24.7
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccC
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGD 71 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~ 71 (276)
++++||..| +.+|+.|...-..|.++.+++
T Consensus 25 gk~vvv~F~-a~~C~~C~~~~~~l~~l~~~~ 54 (127)
T cd03010 25 GKPYLLNVW-ASWCAPCREEHPVLMALARQG 54 (127)
T ss_pred CCEEEEEEE-cCcCHHHHHHHHHHHHHHHhc
Confidence 456777766 899999999999999998753
No 67
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=94.83 E-value=0.17 Score=38.25 Aligned_cols=79 Identities=11% Similarity=0.268 Sum_probs=51.8
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCc
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFT 120 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYT 120 (276)
+++++|.+| +.+|+.|=..+..|.++.++. .+++..+....+ ....+.+++++.. +
T Consensus 14 ~~~v~v~f~-~~~C~~C~~~~~~l~~l~~~~---~~~i~~~~vd~~------------------~~~~~~~~~~i~~--~ 69 (97)
T cd02984 14 SKLLVLHFW-APWAEPCKQMNQVFEELAKEA---FPSVLFLSIEAE------------------ELPEISEKFEITA--V 69 (97)
T ss_pred CCEEEEEEE-CCCCHHHHHHhHHHHHHHHHh---CCceEEEEEccc------------------cCHHHHHhcCCcc--c
Confidence 456666555 899999999999999999863 346665554332 2345778899988 7
Q ss_pred ceEE--EcCeEe--ccCCChhhHHHHH
Q 023845 121 PQLV--FQGRVQ--CQGNDQDGMLSAI 143 (276)
Q Consensus 121 Pq~v--VnG~~~--~~g~~~~~~~~~i 143 (276)
|+++ -||+.. ..|.+...+.+.|
T Consensus 70 Pt~~~~~~g~~~~~~~g~~~~~l~~~~ 96 (97)
T cd02984 70 PTFVFFRNGTIVDRVSGADPKELAKKV 96 (97)
T ss_pred cEEEEEECCEEEEEEeCCCHHHHHHhh
Confidence 7744 456553 2455555555433
No 68
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=94.79 E-value=0.068 Score=44.31 Aligned_cols=74 Identities=9% Similarity=0.049 Sum_probs=44.5
Q ss_pred hhhhhcCCceEEEEecCCCCCCCHHHHHH--HH-HhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHH
Q 023845 35 AEEMRRGGAVLVELFSSQGCKTSPEAEIL--VS-RLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVE 111 (276)
Q Consensus 35 ~~~~~~~~~vvVElFTSqGCssCP~Ad~~--l~-~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~ 111 (276)
+.+...+++++|. |++.+|+.|=.-++. -. ++.+. +.++.+++-++++ ..|+...+...++.
T Consensus 9 ~~Ak~~~KpVll~-f~a~WC~~Ck~me~~~f~~~~V~~~---l~~~fv~VkvD~~-----------~~~~~~~~~~~~~~ 73 (124)
T cd02955 9 EKARREDKPIFLS-IGYSTCHWCHVMEHESFEDEEVAAI---LNENFVPIKVDRE-----------ERPDVDKIYMNAAQ 73 (124)
T ss_pred HHHHHcCCeEEEE-EccCCCHhHHHHHHHccCCHHHHHH---HhCCEEEEEEeCC-----------cCcHHHHHHHHHHH
Confidence 3456667888888 899999999877651 11 33321 1347787766554 33444444444443
Q ss_pred -HhCCCCCCcceEEE
Q 023845 112 -ALNLDTMFTPQLVF 125 (276)
Q Consensus 112 -~~g~~~vYTPq~vV 125 (276)
.+|..+ +|.+++
T Consensus 74 ~~~~~~G--~Pt~vf 86 (124)
T cd02955 74 AMTGQGG--WPLNVF 86 (124)
T ss_pred HhcCCCC--CCEEEE
Confidence 346554 999665
No 69
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=94.75 E-value=0.15 Score=42.69 Aligned_cols=100 Identities=14% Similarity=0.189 Sum_probs=55.0
Q ss_pred cCCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccC--CCCCC--CCCCccccHHHHHHHHHhCC
Q 023845 40 RGGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDY--MGWKD--PYGSSQWTVRQKAYVEALNL 115 (276)
Q Consensus 40 ~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDy--lGWkD--~fa~~~~t~Rq~~Y~~~~g~ 115 (276)
.+++++|. |++.+|+.|......|.++.+++. ..++..+++..|.=.. .-|.+ .+.-+...+..+...+.+|+
T Consensus 60 ~~k~~~l~-f~a~~C~~C~~~~~~l~~~~~~~~--~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 136 (173)
T PRK03147 60 KGKGVFLN-FWGTWCKPCEKEMPYMNELYPKYK--EKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGV 136 (173)
T ss_pred CCCEEEEE-EECCcCHHHHHHHHHHHHHHHHhh--cCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCC
Confidence 34567775 558999999998899999987653 2346666776652000 00000 01111122333455667777
Q ss_pred CCCCcce-EEEc--CeEec---cCCChhhHHHHHH
Q 023845 116 DTMFTPQ-LVFQ--GRVQC---QGNDQDGMLSAIA 144 (276)
Q Consensus 116 ~~vYTPq-~vVn--G~~~~---~g~~~~~~~~~i~ 144 (276)
.. +|. ++|| |+... +..+.+.+.+.+.
T Consensus 137 ~~--~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~ 169 (173)
T PRK03147 137 GP--LPTTFLIDKDGKVVKVITGEMTEEQLEEYLE 169 (173)
T ss_pred CC--cCeEEEECCCCcEEEEEeCCCCHHHHHHHHH
Confidence 66 786 6675 65442 2234455555554
No 70
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=94.48 E-value=0.1 Score=41.96 Aligned_cols=64 Identities=16% Similarity=0.208 Sum_probs=45.9
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcc
Q 023845 42 GAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTP 121 (276)
Q Consensus 42 ~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTP 121 (276)
++||| .|.+..|+.|-..+..|.+|++++ +++.- +.|| .+.+...++++++.. +|
T Consensus 23 ~~vvV-~f~a~~c~~C~~~~p~l~~la~~~----~~i~f--~~Vd----------------~~~~~~l~~~~~v~~--vP 77 (113)
T cd02989 23 ERVVC-HFYHPEFFRCKIMDKHLEILAKKH----LETKF--IKVN----------------AEKAPFLVEKLNIKV--LP 77 (113)
T ss_pred CcEEE-EEECCCCccHHHHHHHHHHHHHHc----CCCEE--EEEE----------------cccCHHHHHHCCCcc--CC
Confidence 44444 567889999999999999999875 35433 5555 334556789999999 77
Q ss_pred eEE--EcCeEe
Q 023845 122 QLV--FQGRVQ 130 (276)
Q Consensus 122 q~v--VnG~~~ 130 (276)
+++ -||+..
T Consensus 78 t~l~fk~G~~v 88 (113)
T cd02989 78 TVILFKNGKTV 88 (113)
T ss_pred EEEEEECCEEE
Confidence 754 467644
No 71
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=94.48 E-value=0.18 Score=40.88 Aligned_cols=44 Identities=16% Similarity=0.037 Sum_probs=28.2
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeee
Q 023845 42 GAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVD 86 (276)
Q Consensus 42 ~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVd 86 (276)
+++||. |.+.+|++|...-..|.++.++.....+++..+..++|
T Consensus 18 k~vll~-F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d 61 (132)
T cd02964 18 KTVGLY-FSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRD 61 (132)
T ss_pred CEEEEE-EECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecC
Confidence 455554 55999999999888888876654211135555555554
No 72
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=94.47 E-value=0.08 Score=41.81 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=28.3
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEE
Q 023845 42 GAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAY 83 (276)
Q Consensus 42 ~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~ 83 (276)
+++||.+| +-+|+.|......|.++.++ -.++++++
T Consensus 21 k~~vl~F~-~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~ 56 (123)
T cd03011 21 KPVLVYFW-ATWCPVCRFTSPTVNQLAAD-----YPVVSVAL 56 (123)
T ss_pred CEEEEEEE-CCcChhhhhhChHHHHHHhh-----CCEEEEEc
Confidence 56666655 88999999999999999874 26777775
No 73
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=94.44 E-value=0.085 Score=43.06 Aligned_cols=57 Identities=16% Similarity=0.038 Sum_probs=43.6
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCC
Q 023845 42 GAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNL 115 (276)
Q Consensus 42 ~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~ 115 (276)
+++||-.|...+|+.|+..-..|.++.++.. ..++..+++.+|. .+.++.|.+..+.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~--~~~v~vi~vs~d~---------------~~~~~~~~~~~~~ 85 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFE--AAGAEVLGISVDS---------------PFSLRAWAEENGL 85 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHH--hCCCEEEEecCCC---------------HHHHHHHHHhcCC
Confidence 6889999989999999988888888877553 2467777777752 3457788888774
No 74
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=94.39 E-value=0.23 Score=37.33 Aligned_cols=81 Identities=14% Similarity=0.274 Sum_probs=56.1
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCc
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFT 120 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYT 120 (276)
.+++||++|+ ..|++|-.....|.+++++. ..+|..+.+..+ ..+.+.+++++.. +
T Consensus 17 ~~~vvv~f~~-~~C~~C~~~~~~~~~~~~~~---~~~v~~~~vd~~------------------~~~~l~~~~~v~~--~ 72 (103)
T PF00085_consen 17 DKPVVVYFYA-PWCPPCKAFKPILEKLAKEY---KDNVKFAKVDCD------------------ENKELCKKYGVKS--V 72 (103)
T ss_dssp SSEEEEEEES-TTSHHHHHHHHHHHHHHHHT---TTTSEEEEEETT------------------TSHHHHHHTTCSS--S
T ss_pred CCCEEEEEeC-CCCCccccccceeccccccc---ccccccchhhhh------------------ccchhhhccCCCC--C
Confidence 4566666555 69999999999999999876 236666555443 2267899999988 7
Q ss_pred ceE--EEcCeEec--cCC-ChhhHHHHHHc
Q 023845 121 PQL--VFQGRVQC--QGN-DQDGMLSAIAN 145 (276)
Q Consensus 121 Pq~--vVnG~~~~--~g~-~~~~~~~~i~~ 145 (276)
|++ +-||+... .|. +.+.+.+.|++
T Consensus 73 Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 73 PTIIFFKNGKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp SEEEEEETTEEEEEEESSSSHHHHHHHHHH
T ss_pred CEEEEEECCcEEEEEECCCCHHHHHHHHHc
Confidence 774 44665542 444 56677776653
No 75
>PRK10996 thioredoxin 2; Provisional
Probab=94.39 E-value=0.28 Score=40.82 Aligned_cols=81 Identities=11% Similarity=0.182 Sum_probs=53.2
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCc
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFT 120 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYT 120 (276)
+++++| .|++.+|+.|-.-...|.+++++. .+++..+.+.++ ......+++++.+ +
T Consensus 52 ~k~vvv-~F~a~wC~~C~~~~~~l~~l~~~~---~~~v~~~~vd~~------------------~~~~l~~~~~V~~--~ 107 (139)
T PRK10996 52 DLPVVI-DFWAPWCGPCRNFAPIFEDVAAER---SGKVRFVKVNTE------------------AERELSARFRIRS--I 107 (139)
T ss_pred CCeEEE-EEECCCCHHHHHHHHHHHHHHHHh---CCCeEEEEEeCC------------------CCHHHHHhcCCCc--c
Confidence 444544 566688999999888999998764 346666555443 1245678899988 8
Q ss_pred ceEEE--cCeEec--cC-CChhhHHHHHHc
Q 023845 121 PQLVF--QGRVQC--QG-NDQDGMLSAIAN 145 (276)
Q Consensus 121 Pq~vV--nG~~~~--~g-~~~~~~~~~i~~ 145 (276)
|++++ ||+... .| .+.+.+.+.|.+
T Consensus 108 Ptlii~~~G~~v~~~~G~~~~e~l~~~l~~ 137 (139)
T PRK10996 108 PTIMIFKNGQVVDMLNGAVPKAPFDSWLNE 137 (139)
T ss_pred CEEEEEECCEEEEEEcCCCCHHHHHHHHHH
Confidence 88766 676542 23 335556666654
No 76
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=94.26 E-value=0.031 Score=45.71 Aligned_cols=46 Identities=20% Similarity=0.214 Sum_probs=33.6
Q ss_pred hcCCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeee
Q 023845 39 RRGGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVD 86 (276)
Q Consensus 39 ~~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVd 86 (276)
-..+++||..|.+-+|+.|-..-..|.+|.+.+. ..+|..+++..+
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~--~~~v~~v~v~~~ 71 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYK--DKGVDVVGVSSD 71 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHH--TTTCEEEEEEES
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhc--cCceEEEEeccc
Confidence 5567899999988899999988889999976543 234444444444
No 77
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=0.16 Score=41.23 Aligned_cols=69 Identities=26% Similarity=0.349 Sum_probs=50.5
Q ss_pred cCCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCC
Q 023845 40 RGGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMF 119 (276)
Q Consensus 40 ~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vY 119 (276)
...+|| +|+-.+|+.|=.|.++|.++.- .+.|+=|--| +.-.+-|+.+.+.-|.++
T Consensus 12 ~~~~VV--ifSKs~C~~c~~~k~ll~~~~v-----~~~vvELD~~---------------~~g~eiq~~l~~~tg~~t-- 67 (104)
T KOG1752|consen 12 SENPVV--IFSKSSCPYCHRAKELLSDLGV-----NPKVVELDED---------------EDGSEIQKALKKLTGQRT-- 67 (104)
T ss_pred hcCCEE--EEECCcCchHHHHHHHHHhCCC-----CCEEEEccCC---------------CCcHHHHHHHHHhcCCCC--
Confidence 334555 5999999999999999999544 2344444333 223488999998888888
Q ss_pred cceEEEcCeEeccC
Q 023845 120 TPQLVFQGRVQCQG 133 (276)
Q Consensus 120 TPq~vVnG~~~~~g 133 (276)
+|.++|||+- ++|
T Consensus 68 vP~vFI~Gk~-iGG 80 (104)
T KOG1752|consen 68 VPNVFIGGKF-IGG 80 (104)
T ss_pred CCEEEECCEE-EcC
Confidence 9999999974 444
No 78
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=94.18 E-value=0.12 Score=40.66 Aligned_cols=43 Identities=21% Similarity=0.215 Sum_probs=31.4
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeee
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVD 86 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVd 86 (276)
+++++|. |.+..|++|-.....+.++++.+. ..++..+.+.+|
T Consensus 21 ~k~vlv~-f~a~wC~~C~~~~~~~~~la~~~~--~~~~~~~~vd~d 63 (109)
T cd02993 21 NQSTLVV-LYAPWCPFCQAMEASYEELAEKLA--GSNVKVAKFNAD 63 (109)
T ss_pred CCCEEEE-EECCCCHHHHHHhHHHHHHHHHhc--cCCeEEEEEECC
Confidence 4566666 558889999999999999987653 335666666554
No 79
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=94.15 E-value=0.31 Score=36.38 Aligned_cols=80 Identities=18% Similarity=0.276 Sum_probs=51.0
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcc
Q 023845 42 GAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTP 121 (276)
Q Consensus 42 ~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTP 121 (276)
++++|- |.+.+|+.|=.....|.++.++. .+++..+.++.+ ....+.+++++.. +|
T Consensus 15 ~~vvi~-f~~~~C~~C~~~~~~l~~~~~~~---~~~~~~~~vd~~------------------~~~~~~~~~~v~~--~P 70 (101)
T TIGR01068 15 KPVLVD-FWAPWCGPCKMIAPILEELAKEY---EGKVKFVKLNVD------------------ENPDIAAKYGIRS--IP 70 (101)
T ss_pred CcEEEE-EECCCCHHHHHhCHHHHHHHHHh---cCCeEEEEEECC------------------CCHHHHHHcCCCc--CC
Confidence 355555 55789999999999999998654 335666555544 1134567788887 99
Q ss_pred eEEE--cCeEec--cCC-ChhhHHHHHHc
Q 023845 122 QLVF--QGRVQC--QGN-DQDGMLSAIAN 145 (276)
Q Consensus 122 q~vV--nG~~~~--~g~-~~~~~~~~i~~ 145 (276)
.+++ +|+... .|. +.+.+...|++
T Consensus 71 ~~~~~~~g~~~~~~~g~~~~~~l~~~l~~ 99 (101)
T TIGR01068 71 TLLLFKNGKEVDRSVGALPKAALKQLINK 99 (101)
T ss_pred EEEEEeCCcEeeeecCCCCHHHHHHHHHh
Confidence 9777 665432 222 24555555543
No 80
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=94.02 E-value=0.22 Score=40.95 Aligned_cols=66 Identities=11% Similarity=0.130 Sum_probs=46.8
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceE
Q 023845 44 VLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQL 123 (276)
Q Consensus 44 vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~ 123 (276)
.+|=.|+..+|+.|-.-+..|.+|+.++ .+.+.-+-..+| .-...+.+++++++.|=.+
T Consensus 16 ~vVV~F~A~WCgpCk~m~P~le~la~~~---~~~v~f~kVDvD------------------~~~~la~~~~V~~iPTf~~ 74 (114)
T cd02954 16 VVVIRFGRDWDPVCMQMDEVLAKIAEDV---SNFAVIYLVDID------------------EVPDFNKMYELYDPPTVMF 74 (114)
T ss_pred EEEEEEECCCChhHHHHHHHHHHHHHHc---cCceEEEEEECC------------------CCHHHHHHcCCCCCCEEEE
Confidence 4555699999999999999999999875 233444555544 3356789999999444445
Q ss_pred EEcCeEe
Q 023845 124 VFQGRVQ 130 (276)
Q Consensus 124 vVnG~~~ 130 (276)
+-||+..
T Consensus 75 fk~G~~v 81 (114)
T cd02954 75 FFRNKHM 81 (114)
T ss_pred EECCEEE
Confidence 5577654
No 81
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=93.98 E-value=0.11 Score=41.69 Aligned_cols=57 Identities=18% Similarity=0.104 Sum_probs=40.9
Q ss_pred cCCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHh
Q 023845 40 RGGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEAL 113 (276)
Q Consensus 40 ~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~ 113 (276)
..+++||..|.+-+|+.|+..-..|.++.++.. .+++..+++.+|- .+.++.|.+.+
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~--~~~~~~i~is~d~---------------~~~~~~~~~~~ 77 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFA--KGGAEVLGVSVDS---------------PFSHKAWAEKE 77 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHH--HCCCEEEEEeCCC---------------HHHHHHHHhcc
Confidence 567899999989999999998888888876542 2355666665651 24566777776
No 82
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=93.96 E-value=0.29 Score=42.67 Aligned_cols=91 Identities=24% Similarity=0.379 Sum_probs=53.4
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeec-----------ccC----CCCCC---------CC
Q 023845 42 GAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDY-----------WDY----MGWKD---------PY 97 (276)
Q Consensus 42 ~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdY-----------WDy----lGWkD---------~f 97 (276)
....|-+||.-.||+|=..+..|.++.. .-.|..+.|.+.. |-. --|++ +.
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~~-----~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~ 151 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPNAD-----GVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPA 151 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhccC-----ceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCc
Confidence 3577778999999999999998887222 1133333332211 100 01111 11
Q ss_pred CC-ccccHHHHHHHHHhCCCCCCcceEEEc-CeEeccCC-ChhhHH
Q 023845 98 GS-SQWTVRQKAYVEALNLDTMFTPQLVFQ-GRVQCQGN-DQDGML 140 (276)
Q Consensus 98 a~-~~~t~Rq~~Y~~~~g~~~vYTPq~vVn-G~~~~~g~-~~~~~~ 140 (276)
.. ..-.+.+..+++.+|+++ ||.+|++ |+.. .|. +.+.+.
T Consensus 152 ~~~~~~i~~~~~l~~~~gi~g--tPtii~~~G~~~-~G~~~~~~l~ 194 (197)
T cd03020 152 ASCDNPVAANLALGRQLGVNG--TPTIVLADGRVV-PGAPPAAQLE 194 (197)
T ss_pred cccCchHHHHHHHHHHcCCCc--ccEEEECCCeEe-cCCCCHHHHH
Confidence 11 124567788899999999 9999995 7654 444 344443
No 83
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=93.96 E-value=0.049 Score=46.65 Aligned_cols=23 Identities=9% Similarity=0.270 Sum_probs=20.6
Q ss_pred EEEecCC------CCCCCHHHHHHHHHhc
Q 023845 46 VELFSSQ------GCKTSPEAEILVSRLG 68 (276)
Q Consensus 46 VElFTSq------GCssCP~Ad~~l~~l~ 68 (276)
|+|||.. .|+.|-.|..+|.++.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~ 30 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFR 30 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCC
Confidence 6799999 9999999999999864
No 84
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=93.95 E-value=0.59 Score=36.37 Aligned_cols=79 Identities=11% Similarity=0.113 Sum_probs=53.2
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceE
Q 023845 44 VLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQL 123 (276)
Q Consensus 44 vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~ 123 (276)
.+|=.|.+..|++|=.....|.++.+++. .+.+..+...+| + ...+++++++. +|++
T Consensus 19 ~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~--~~~~~~~~vd~d--~-----------------~~~~~~~~v~~--~Pt~ 75 (102)
T cd02948 19 LTVVDVYQEWCGPCKAVVSLFKKIKNELG--DDLLHFATAEAD--T-----------------IDTLKRYRGKC--EPTF 75 (102)
T ss_pred eEEEEEECCcCHhHHHHhHHHHHHHHHcC--CCcEEEEEEeCC--C-----------------HHHHHHcCCCc--CcEE
Confidence 45567889999999999999999987652 233444444443 1 23578899988 7775
Q ss_pred EE--cCeE--eccCCChhhHHHHHHc
Q 023845 124 VF--QGRV--QCQGNDQDGMLSAIAN 145 (276)
Q Consensus 124 vV--nG~~--~~~g~~~~~~~~~i~~ 145 (276)
++ ||+. ...|.+...+.+.|.+
T Consensus 76 ~~~~~g~~~~~~~G~~~~~~~~~i~~ 101 (102)
T cd02948 76 LFYKNGELVAVIRGANAPLLNKTITE 101 (102)
T ss_pred EEEECCEEEEEEecCChHHHHHHHhh
Confidence 44 5653 2466677777777654
No 85
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=93.93 E-value=0.19 Score=38.70 Aligned_cols=63 Identities=13% Similarity=0.164 Sum_probs=43.1
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcc
Q 023845 42 GAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTP 121 (276)
Q Consensus 42 ~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTP 121 (276)
++++| .|.+.+|++|-.....+.+++++. .+.+....+.+| ......++++++. +|
T Consensus 19 ~~~~v-~f~a~wC~~C~~~~p~~~~~a~~~---~~~~~~~~vd~~------------------~~~~~~~~~~v~~--~P 74 (101)
T cd03003 19 EIWFV-NFYSPRCSHCHDLAPTWREFAKEM---DGVIRIGAVNCG------------------DDRMLCRSQGVNS--YP 74 (101)
T ss_pred CeEEE-EEECCCChHHHHhHHHHHHHHHHh---cCceEEEEEeCC------------------ccHHHHHHcCCCc--cC
Confidence 44554 566799999999999999999875 334444455443 1134567788887 88
Q ss_pred eEEE--cCe
Q 023845 122 QLVF--QGR 128 (276)
Q Consensus 122 q~vV--nG~ 128 (276)
++++ +|+
T Consensus 75 t~~~~~~g~ 83 (101)
T cd03003 75 SLYVFPSGM 83 (101)
T ss_pred EEEEEcCCC
Confidence 8765 554
No 86
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=93.89 E-value=0.24 Score=36.98 Aligned_cols=58 Identities=21% Similarity=0.194 Sum_probs=41.1
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhC
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALN 114 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g 114 (276)
+++++|..| +..|+.|+.....|.++.++.. .+++..+++.+|-. -.+..+.|.+..+
T Consensus 19 ~k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~~v~~d~~-------------~~~~~~~~~~~~~ 76 (116)
T cd02966 19 GKVVLVNFW-ASWCPPCRAEMPELEALAKEYK--DDGVEVVGVNVDDD-------------DPAAVKAFLKKYG 76 (116)
T ss_pred CCEEEEEee-cccChhHHHHhHHHHHHHHHhC--CCCeEEEEEECCCC-------------CHHHHHHHHHHcC
Confidence 445666555 6799999999999999988653 36788888877621 2455666666665
No 87
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=93.79 E-value=0.11 Score=44.49 Aligned_cols=96 Identities=16% Similarity=0.310 Sum_probs=53.9
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEE------eeecccCCCCCCCCCCccccHHHHHHHHHhC
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAY------HVDYWDYMGWKDPYGSSQWTVRQKAYVEALN 114 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~------hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g 114 (276)
++++||.. .+.+|+.|-..-..|.++.++ .-.||.+++ |..|++..|+. |.. -..+.....++.++
T Consensus 63 gk~vll~F-~a~wC~~C~~~~p~l~~l~~~----~~~vi~V~~~~~~~~~~~~~~~~~~~--f~~-v~~D~~~~~~~~~~ 134 (173)
T TIGR00385 63 GKPVLLNV-WASWCPPCRAEHPYLNELAKD----GLPIVGVDYKDQSQNALKFLKELGNP--YQA-ILIDPNGKLGLDLG 134 (173)
T ss_pred CCEEEEEE-ECCcCHHHHHHHHHHHHHHHc----CCEEEEEECCCChHHHHHHHHHcCCC--Cce-EEECCCCchHHhcC
Confidence 44555555 578999999888888888763 224565554 12344433332 210 11122234556677
Q ss_pred CCCCCcc-eEEEc--CeEecc--C-CChhhHHHHHHcC
Q 023845 115 LDTMFTP-QLVFQ--GRVQCQ--G-NDQDGMLSAIANA 146 (276)
Q Consensus 115 ~~~vYTP-q~vVn--G~~~~~--g-~~~~~~~~~i~~~ 146 (276)
... +| .++|| |+.... | -+.+.+...|.+.
T Consensus 135 v~~--~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 135 VYG--APETFLVDGNGVILYRHAGPLNNEVWTEGFLPA 170 (173)
T ss_pred Cee--CCeEEEEcCCceEEEEEeccCCHHHHHHHHHHH
Confidence 666 79 58886 553332 2 3456666666654
No 88
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=93.79 E-value=0.24 Score=38.16 Aligned_cols=61 Identities=15% Similarity=0.126 Sum_probs=41.4
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCc
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFT 120 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYT 120 (276)
+++++| .|.+.+|++|-.....+.+++++. .+.+....+..+ ......+.++++. +
T Consensus 19 ~~~v~v-~f~a~wC~~C~~~~p~~~~~~~~~---~~~~~~~~vd~~------------------~~~~~~~~~~i~~--~ 74 (104)
T cd03004 19 KEPWLV-DFYAPWCGPCQALLPELRKAARAL---KGKVKVGSVDCQ------------------KYESLCQQANIRA--Y 74 (104)
T ss_pred CCeEEE-EEECCCCHHHHHHHHHHHHHHHHh---cCCcEEEEEECC------------------chHHHHHHcCCCc--c
Confidence 345655 566689999999999999998865 334433333332 2345678889988 8
Q ss_pred ceEEE
Q 023845 121 PQLVF 125 (276)
Q Consensus 121 Pq~vV 125 (276)
|++++
T Consensus 75 Pt~~~ 79 (104)
T cd03004 75 PTIRL 79 (104)
T ss_pred cEEEE
Confidence 88554
No 89
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=93.67 E-value=0.27 Score=50.43 Aligned_cols=85 Identities=18% Similarity=0.264 Sum_probs=52.9
Q ss_pred CCceEEEEecCCCCCCCHHHHHHH---HHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCC
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILV---SRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDT 117 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l---~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~ 117 (276)
+++|+| .|++.+|.+|-.-++.+ .++.++. +++..+.+++|- +.+..+++.+++++..
T Consensus 474 gK~VlV-dF~A~WC~~Ck~~e~~~~~~~~v~~~l----~~~~~v~vDvt~--------------~~~~~~~l~~~~~v~g 534 (571)
T PRK00293 474 GKPVML-DLYADWCVACKEFEKYTFSDPQVQQAL----ADTVLLQADVTA--------------NNAEDVALLKHYNVLG 534 (571)
T ss_pred CCcEEE-EEECCcCHhHHHHHHHhcCCHHHHHHh----cCCEEEEEECCC--------------CChhhHHHHHHcCCCC
Confidence 456666 57799999998766543 4444432 356555555542 1234567888999887
Q ss_pred CCcceEEE---cCeEe----ccC-CChhhHHHHHHcC
Q 023845 118 MFTPQLVF---QGRVQ----CQG-NDQDGMLSAIANA 146 (276)
Q Consensus 118 vYTPq~vV---nG~~~----~~g-~~~~~~~~~i~~~ 146 (276)
+|++++ ||+.. ..| .+.+++.+.|++.
T Consensus 535 --~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 535 --LPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred --CCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 999665 46542 234 3566677766653
No 90
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=93.65 E-value=0.088 Score=45.68 Aligned_cols=97 Identities=16% Similarity=0.197 Sum_probs=53.5
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEee------ecccCCCCCCCCCCccccHHHHHHHHHhC
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHV------DYWDYMGWKDPYGSSQWTVRQKAYVEALN 114 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hV------dYWDylGWkD~fa~~~~t~Rq~~Y~~~~g 114 (276)
.+++||. |....|+.|-..-..|.++.++ .-.||.+++.- .|+...|..-+. ...+-+..+.+.+|
T Consensus 68 gk~vvv~-FwatwC~~C~~e~p~l~~l~~~----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~---~~~D~~~~~~~~~g 139 (185)
T PRK15412 68 GKPVLLN-VWATWCPTCRAEHQYLNQLSAQ----GIRVVGMNYKDDRQKAISWLKELGNPYAL---SLFDGDGMLGLDLG 139 (185)
T ss_pred CCEEEEE-EECCCCHHHHHHHHHHHHHHHc----CCEEEEEECCCCHHHHHHHHHHcCCCCce---EEEcCCccHHHhcC
Confidence 4556655 5589999998888888888753 22566655421 122222221110 01122334566778
Q ss_pred CCCCCcc-eEEEcCeEe----ccCC-ChhhHHHHHHcCC
Q 023845 115 LDTMFTP-QLVFQGRVQ----CQGN-DQDGMLSAIANAP 147 (276)
Q Consensus 115 ~~~vYTP-q~vVnG~~~----~~g~-~~~~~~~~i~~~~ 147 (276)
+.. +| .++||.... ..|. +++.+++.|....
T Consensus 140 v~~--~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 140 VYG--APETFLIDGNGIIRYRHAGDLNPRVWESEIKPLW 176 (185)
T ss_pred CCc--CCeEEEECCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 776 89 588873322 2232 3566666666544
No 91
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=93.56 E-value=0.17 Score=39.37 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=24.5
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccC
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGD 71 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~ 71 (276)
.+++||. |.+.+|+.|-..-..|.++.+++
T Consensus 21 gk~vvl~-F~~~wC~~C~~~~p~l~~~~~~~ 50 (114)
T cd02967 21 GRPTLLF-FLSPTCPVCKKLLPVIRSIARAE 50 (114)
T ss_pred CCeEEEE-EECCCCcchHhHhHHHHHHHHHh
Confidence 4678888 55889999999888899987654
No 92
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=93.55 E-value=0.29 Score=31.56 Aligned_cols=62 Identities=19% Similarity=0.113 Sum_probs=41.3
Q ss_pred EEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceEEEc
Q 023845 47 ELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQLVFQ 126 (276)
Q Consensus 47 ElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~vVn 126 (276)
-+|.+.+|+.|-.....+.++... .+++....++++..+ . .......++.. ++|.+++.
T Consensus 2 ~~~~~~~c~~c~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-------------~--~~~~~~~~~~~--~~P~~~~~ 60 (69)
T cd01659 2 VLFYAPWCPFCQALRPVLAELALL----NKGVKFEAVDVDEDP-------------A--LEKELKRYGVG--GVPTLVVF 60 (69)
T ss_pred EEEECCCChhHHhhhhHHHHHHhh----CCCcEEEEEEcCCCh-------------H--HhhHHHhCCCc--cccEEEEE
Confidence 478899999999999999988221 457777777776322 1 11113344444 49999888
Q ss_pred CeE
Q 023845 127 GRV 129 (276)
Q Consensus 127 G~~ 129 (276)
+..
T Consensus 61 ~~~ 63 (69)
T cd01659 61 GPG 63 (69)
T ss_pred eCC
Confidence 743
No 93
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=93.47 E-value=0.45 Score=35.71 Aligned_cols=83 Identities=12% Similarity=0.228 Sum_probs=51.4
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcc
Q 023845 42 GAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTP 121 (276)
Q Consensus 42 ~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTP 121 (276)
..+++-+|++..|++|=.....+.+++.... ..++|.......+ ......+.+++.. +|
T Consensus 13 ~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~-~~~~~~~~~~d~~------------------~~~~~~~~~~i~~--~P 71 (102)
T TIGR01126 13 NKDVLVEFYAPWCGHCKNLAPEYEKLAKELK-GDPDIVLAKVDAT------------------AEKDLASRFGVSG--FP 71 (102)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhc-cCCceEEEEEEcc------------------chHHHHHhCCCCc--CC
Confidence 4577888999999999888888888876542 1224655544433 2355667788876 99
Q ss_pred eEE-Ec-Ce--EeccCC-ChhhHHHHHHc
Q 023845 122 QLV-FQ-GR--VQCQGN-DQDGMLSAIAN 145 (276)
Q Consensus 122 q~v-Vn-G~--~~~~g~-~~~~~~~~i~~ 145 (276)
.++ +. |. ....|. ..+.+...|.+
T Consensus 72 ~~~~~~~~~~~~~~~g~~~~~~l~~~i~~ 100 (102)
T TIGR01126 72 TIKFFPKGKKPVDYEGGRDLEAIVEFVNE 100 (102)
T ss_pred EEEEecCCCcceeecCCCCHHHHHHHHHh
Confidence 864 32 32 123443 34556555554
No 94
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=93.27 E-value=0.34 Score=40.81 Aligned_cols=44 Identities=14% Similarity=0.213 Sum_probs=31.4
Q ss_pred hhhhcCCceEEEEecCCCCCCCHHHHHHH------HHhcccCCCCCCCEEEEEEeee
Q 023845 36 EEMRRGGAVLVELFSSQGCKTSPEAEILV------SRLGRGDFELGVPVIVLAYHVD 86 (276)
Q Consensus 36 ~~~~~~~~vvVElFTSqGCssCP~Ad~~l------~~l~~~~~~~~~~VIaLa~hVd 86 (276)
.+...+++++|. |.+.+|+.|=.-++.+ .++. ..+.|+|.+.+|
T Consensus 18 ~Ak~~~Kpvmv~-f~sdwC~~Ck~l~k~~f~~~eV~~~l------~~~Fv~V~l~~d 67 (130)
T cd02960 18 KAKKSNKPLMVI-HHLEDCPHSQALKKAFAEHKEIQKLA------QEDFIMLNLVHE 67 (130)
T ss_pred HHHHCCCeEEEE-EeCCcCHhHHHHHHHhhCCHHHHHHH------HhCeEEEEEEec
Confidence 345667788887 9999999998777654 2222 237888888776
No 95
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=93.03 E-value=0.098 Score=39.28 Aligned_cols=48 Identities=23% Similarity=0.347 Sum_probs=30.5
Q ss_pred hhhhhcCCceEEEEecCCCCCCCHHHHHHH---HHhcccCCCCCCCEEEEEEeee
Q 023845 35 AEEMRRGGAVLVELFSSQGCKTSPEAEILV---SRLGRGDFELGVPVIVLAYHVD 86 (276)
Q Consensus 35 ~~~~~~~~~vvVElFTSqGCssCP~Ad~~l---~~l~~~~~~~~~~VIaLa~hVd 86 (276)
+.+...+++++|.+ ++.+|++|-.-++.+ .++.+.. .+++|.+-+.++
T Consensus 11 ~~A~~~~kpvlv~f-~a~wC~~C~~l~~~~~~~~~v~~~~---~~~fv~v~vd~~ 61 (82)
T PF13899_consen 11 AEAKKEGKPVLVDF-GADWCPPCKKLEREVFSDPEVQEAL---NKNFVLVKVDVD 61 (82)
T ss_dssp HHHHHHTSEEEEEE-ETTTTHHHHHHHHHTTTSHHHHHHH---HHCSEEEEEETT
T ss_pred HHHHHcCCCEEEEE-ECCCCHhHHHHHHHHcCCHHHHHHH---HCCEEEEEEEcC
Confidence 34556677788876 899999998777666 2222211 236777666553
No 96
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=92.79 E-value=0.46 Score=41.48 Aligned_cols=94 Identities=14% Similarity=0.362 Sum_probs=53.8
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEE-----eeecccCCCCCCCCCCccccHHHHHHHHHhCC
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAY-----HVDYWDYMGWKDPYGSSQWTVRQKAYVEALNL 115 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~-----hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~ 115 (276)
.++++| .|.+.+|+.|..--..+.++.+++ .-+|+.++- |..|+...+-+++ .+.. -....+.++.
T Consensus 74 gk~vvl-~F~atwCp~C~~~lp~l~~~~~~~---~~~vv~Is~~~~~~~~~~~~~~~~~~~----~~~~-~~~i~~~y~v 144 (189)
T TIGR02661 74 GRPTLL-MFTAPSCPVCDKLFPIIKSIARAE---ETDVVMISDGTPAEHRRFLKDHELGGE----RYVV-SAEIGMAFQV 144 (189)
T ss_pred CCEEEE-EEECCCChhHHHHHHHHHHHHHhc---CCcEEEEeCCCHHHHHHHHHhcCCCcc----eeec-hhHHHHhccC
Confidence 445555 667999999998888888887654 357887762 1123332222211 1111 1345667777
Q ss_pred CCCCcce-EEEc--CeEeccCC--ChhhHHHHHHc
Q 023845 116 DTMFTPQ-LVFQ--GRVQCQGN--DQDGMLSAIAN 145 (276)
Q Consensus 116 ~~vYTPq-~vVn--G~~~~~g~--~~~~~~~~i~~ 145 (276)
.. +|. ++|| |+....|. ..+.++..+++
T Consensus 145 ~~--~P~~~lID~~G~I~~~g~~~~~~~le~ll~~ 177 (189)
T TIGR02661 145 GK--IPYGVLLDQDGKIRAKGLTNTREHLESLLEA 177 (189)
T ss_pred Cc--cceEEEECCCCeEEEccCCCCHHHHHHHHHH
Confidence 76 897 5556 55433332 34556666654
No 97
>PTZ00051 thioredoxin; Provisional
Probab=92.75 E-value=0.46 Score=35.94 Aligned_cols=59 Identities=12% Similarity=0.202 Sum_probs=42.2
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceE
Q 023845 44 VLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQL 123 (276)
Q Consensus 44 vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~ 123 (276)
.+|=.|.+..|+.|=.....|.+++++. +++..+...++ ....+.+++++.. +|++
T Consensus 20 ~vli~f~~~~C~~C~~~~~~l~~l~~~~----~~~~~~~vd~~------------------~~~~~~~~~~v~~--~Pt~ 75 (98)
T PTZ00051 20 LVIVDFYAEWCGPCKRIAPFYEECSKEY----TKMVFVKVDVD------------------ELSEVAEKENITS--MPTF 75 (98)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHc----CCcEEEEEECc------------------chHHHHHHCCCce--eeEE
Confidence 4455666889999999999999998863 45555544432 2346788899988 8886
Q ss_pred EEc
Q 023845 124 VFQ 126 (276)
Q Consensus 124 vVn 126 (276)
++-
T Consensus 76 ~~~ 78 (98)
T PTZ00051 76 KVF 78 (98)
T ss_pred EEE
Confidence 664
No 98
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=92.58 E-value=0.35 Score=35.60 Aligned_cols=61 Identities=10% Similarity=0.066 Sum_probs=41.3
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceE
Q 023845 44 VLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQL 123 (276)
Q Consensus 44 vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~ 123 (276)
.+|=+|++.+|+.|-.....+.++++... ..+.+....... ++.....++++++. +|++
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~~~v~~------------------~~~~~~~~~~~i~~--~Pt~ 75 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELK-GDGKVVVAKVDC------------------TANNDLCSEYGVRG--YPTI 75 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhc-cCCceEEEEeec------------------cchHHHHHhCCCCC--CCEE
Confidence 66677888899999999999999876531 023444333322 22456678889877 9985
Q ss_pred EE
Q 023845 124 VF 125 (276)
Q Consensus 124 vV 125 (276)
++
T Consensus 76 ~~ 77 (101)
T cd02961 76 KL 77 (101)
T ss_pred EE
Confidence 43
No 99
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.49 E-value=0.52 Score=44.26 Aligned_cols=85 Identities=20% Similarity=0.294 Sum_probs=66.6
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCc
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFT 120 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYT 120 (276)
....|+-.||-.+|..|-.--..++.|+.+| +.-|=|-.+|| -+|.-+...|+.. +
T Consensus 20 g~k~v~Vdfta~wCGPCk~IaP~Fs~lankY----p~aVFlkVdVd------------------~c~~taa~~gV~a--m 75 (288)
T KOG0908|consen 20 GGKLVVVDFTASWCGPCKRIAPIFSDLANKY----PGAVFLKVDVD------------------ECRGTAATNGVNA--M 75 (288)
T ss_pred CceEEEEEEEecccchHHhhhhHHHHhhhhC----cccEEEEEeHH------------------HhhchhhhcCccc--C
Confidence 3457788999999999999999999999987 46666666665 4555588999999 6
Q ss_pred ce--EEEcCeEe--ccCCChhhHHHHHHcCCCC
Q 023845 121 PQ--LVFQGRVQ--CQGNDQDGMLSAIANAPKF 149 (276)
Q Consensus 121 Pq--~vVnG~~~--~~g~~~~~~~~~i~~~~~~ 149 (276)
|+ ++.||... .-|+|+.+++..|.+....
T Consensus 76 PTFiff~ng~kid~~qGAd~~gLe~kv~~~~st 108 (288)
T KOG0908|consen 76 PTFIFFRNGVKIDQIQGADASGLEEKVAKYAST 108 (288)
T ss_pred ceEEEEecCeEeeeecCCCHHHHHHHHHHHhcc
Confidence 76 55688754 4789999999999876543
No 100
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=92.43 E-value=0.47 Score=39.17 Aligned_cols=68 Identities=15% Similarity=0.199 Sum_probs=51.0
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCC-EEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcc
Q 023845 43 AVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVP-VIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTP 121 (276)
Q Consensus 43 ~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~-VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTP 121 (276)
.+||=.|+..+|+.|=.-+..|.+|+.++ ++ ++-+...|| .-..+++.++++...|=
T Consensus 15 klVVVdF~a~WC~pCk~mdp~l~ela~~~----~~~~~f~kVDVD------------------ev~dva~~y~I~amPtf 72 (114)
T cd02986 15 KVLVLRFGRDEDAVCLQLDDILSKTSHDL----SKMASIYLVDVD------------------KVPVYTQYFDISYIPST 72 (114)
T ss_pred CEEEEEEeCCCChhHHHHHHHHHHHHHHc----cCceEEEEEecc------------------ccHHHHHhcCceeCcEE
Confidence 35556799999999999999999999976 35 777777776 33568899998874444
Q ss_pred eEEEcCeEecc
Q 023845 122 QLVFQGRVQCQ 132 (276)
Q Consensus 122 q~vVnG~~~~~ 132 (276)
.++-||+...+
T Consensus 73 vffkngkh~~~ 83 (114)
T cd02986 73 IFFFNGQHMKV 83 (114)
T ss_pred EEEECCcEEEE
Confidence 46678876543
No 101
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=92.29 E-value=0.59 Score=38.27 Aligned_cols=76 Identities=11% Similarity=0.059 Sum_probs=44.8
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCC--CCCc
Q 023845 43 AVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLD--TMFT 120 (276)
Q Consensus 43 ~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~--~vYT 120 (276)
-..|=.|++.+|+.|=.....|.++.++. ++-..-+++| .|+.....-.+.-..+.+.+++. -.+|
T Consensus 24 ~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-----~~~~y~vdvd-------~~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 91 (122)
T TIGR01295 24 ETATFFIGRKTCPYCRKFSGTLSGVVAQT-----KAPIYYIDSE-------NNGSFEMSSLNDLTAFRSRFGIPTSFMGT 91 (122)
T ss_pred CcEEEEEECCCChhHHHHhHHHHHHHHhc-----CCcEEEEECC-------CccCcCcccHHHHHHHHHHcCCcccCCCC
Confidence 34566799999999999999999999853 3333444444 12111111111234455666643 2369
Q ss_pred ceEEE--cCeEe
Q 023845 121 PQLVF--QGRVQ 130 (276)
Q Consensus 121 Pq~vV--nG~~~ 130 (276)
|++++ ||+..
T Consensus 92 PT~v~~k~Gk~v 103 (122)
T TIGR01295 92 PTFVHITDGKQV 103 (122)
T ss_pred CEEEEEeCCeEE
Confidence 99654 67543
No 102
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=92.28 E-value=0.29 Score=39.72 Aligned_cols=46 Identities=7% Similarity=0.124 Sum_probs=30.3
Q ss_pred hhhcCCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeee
Q 023845 37 EMRRGGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVD 86 (276)
Q Consensus 37 ~~~~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVd 86 (276)
+...++++||.+| +.+|+.|-.-+..+.++..... ...+++.+ ++|
T Consensus 15 A~~~~kpVlV~F~-a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v--~vd 60 (117)
T cd02959 15 AKDSGKPLMLLIH-KTWCGACKALKPKFAESKEISE-LSHNFVMV--NLE 60 (117)
T ss_pred HHHcCCcEEEEEe-CCcCHHHHHHHHHHhhhHHHHh-hcCcEEEE--Eec
Confidence 4445567777655 6999999999888888655321 23456554 454
No 103
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=92.26 E-value=0.44 Score=38.20 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=39.5
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEE-EEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcce
Q 023845 44 VLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIV-LAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQ 122 (276)
Q Consensus 44 vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIa-La~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq 122 (276)
.+|=.|.+.+|+.|-.....+.+++++... .++.+. ..+..+ .+....+.+.++++. +|+
T Consensus 21 ~vvV~f~a~wC~~C~~~~~~~~~la~~~~~-~~~~v~~~~vd~~----------------~~~~~~~~~~~~i~~--~Pt 81 (114)
T cd02992 21 AWLVEFYASWCGHCRAFAPTWKKLARDLRK-WRPVVRVAAVDCA----------------DEENVALCRDFGVTG--YPT 81 (114)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHHHh-cCCceEEEEEecc----------------chhhHHHHHhCCCCC--CCE
Confidence 444456688999999888888888775311 223332 222221 123356788899987 898
Q ss_pred EEE
Q 023845 123 LVF 125 (276)
Q Consensus 123 ~vV 125 (276)
+++
T Consensus 82 ~~l 84 (114)
T cd02992 82 LRY 84 (114)
T ss_pred EEE
Confidence 665
No 104
>PHA02278 thioredoxin-like protein
Probab=92.09 E-value=0.5 Score=37.68 Aligned_cols=71 Identities=14% Similarity=0.273 Sum_probs=47.6
Q ss_pred cCCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCC
Q 023845 40 RGGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMF 119 (276)
Q Consensus 40 ~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vY 119 (276)
.++++|| .|....|..|=.....|.++++++ ..++..+-+.+|.= ++ + ....++++++++
T Consensus 13 ~~~~vvV-~F~A~WCgpCk~m~p~l~~l~~~~---~~~~~~~~vdvd~~-------~~------d-~~~l~~~~~I~~-- 72 (103)
T PHA02278 13 QKKDVIV-MITQDNCGKCEILKSVIPMFQESG---DIKKPILTLNLDAE-------DV------D-REKAVKLFDIMS-- 72 (103)
T ss_pred CCCcEEE-EEECCCCHHHHhHHHHHHHHHhhh---cCCceEEEEECCcc-------cc------c-cHHHHHHCCCcc--
Confidence 3455555 466789999999999999998753 23444566677620 00 0 234788999999
Q ss_pred cceEEE--cCeEe
Q 023845 120 TPQLVF--QGRVQ 130 (276)
Q Consensus 120 TPq~vV--nG~~~ 130 (276)
+|++++ ||+..
T Consensus 73 iPT~i~fk~G~~v 85 (103)
T PHA02278 73 TPVLIGYKDGQLV 85 (103)
T ss_pred ccEEEEEECCEEE
Confidence 777554 77654
No 105
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=92.04 E-value=0.42 Score=36.51 Aligned_cols=60 Identities=8% Similarity=0.069 Sum_probs=39.5
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcce
Q 023845 43 AVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQ 122 (276)
Q Consensus 43 ~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq 122 (276)
.+| =.|.+.+|++|-.....+.+|++... ..+|......++ .+....+++++.+ +|+
T Consensus 18 ~~l-v~f~a~wC~~C~~~~p~~~~l~~~~~--~~~v~~~~vd~~------------------~~~~~~~~~~i~~--~Pt 74 (101)
T cd02994 18 EWM-IEFYAPWCPACQQLQPEWEEFADWSD--DLGINVAKVDVT------------------QEPGLSGRFFVTA--LPT 74 (101)
T ss_pred CEE-EEEECCCCHHHHHHhHHHHHHHHhhc--cCCeEEEEEEcc------------------CCHhHHHHcCCcc--cCE
Confidence 344 56677799999999999999987531 123433333222 2234677888887 888
Q ss_pred EEE
Q 023845 123 LVF 125 (276)
Q Consensus 123 ~vV 125 (276)
+++
T Consensus 75 ~~~ 77 (101)
T cd02994 75 IYH 77 (101)
T ss_pred EEE
Confidence 665
No 106
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=92.02 E-value=0.35 Score=42.45 Aligned_cols=106 Identities=12% Similarity=0.132 Sum_probs=63.5
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCC---------CCCCccccHHHHHHHH
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKD---------PYGSSQWTVRQKAYVE 111 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD---------~fa~~~~t~Rq~~Y~~ 111 (276)
++.+||-.|-+..|+.||..-.-|.++.++..+..=.||+++....+ .+.-|.. .+.-|-..+..+..++
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~-~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEY-AHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHH-HHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 46788866667899999998888888877653223356666654433 2444531 1233445666677788
Q ss_pred HhCCC----CCCcce-EEEcCeEe---------ccCCChhhHHHHHHcCC
Q 023845 112 ALNLD----TMFTPQ-LVFQGRVQ---------CQGNDQDGMLSAIANAP 147 (276)
Q Consensus 112 ~~g~~----~vYTPq-~vVnG~~~---------~~g~~~~~~~~~i~~~~ 147 (276)
.+|.. .+..|. ++||.... ..|.+.+++.+.|....
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~~ 164 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQ 164 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhhh
Confidence 88863 222344 67874422 24455555666665443
No 107
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=92.00 E-value=0.38 Score=38.68 Aligned_cols=59 Identities=12% Similarity=0.143 Sum_probs=42.5
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCC
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLD 116 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~ 116 (276)
++++||-.|.+-+|+.|+..-..|.++.++.. ..++..+++.+|- .+..++|.+.++..
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~--~~~~~vv~is~d~---------------~~~~~~~~~~~~~~ 81 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFK--ALGAVVIGVSPDS---------------VESHAKFAEKYGLP 81 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHH--HCCCEEEEEcCCC---------------HHHHHHHHHHhCCC
Confidence 57899988888999999988888887776542 2356666666641 34567888887753
No 108
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=91.89 E-value=0.51 Score=35.76 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=39.6
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcc
Q 023845 42 GAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTP 121 (276)
Q Consensus 42 ~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTP 121 (276)
++++| +|.+.+|+.|-.....+.+++++. ...+......++ ......+++++++ +|
T Consensus 19 ~~vlv-~f~a~~C~~C~~~~~~~~~~~~~~---~~~~~~~~id~~------------------~~~~~~~~~~i~~--~P 74 (103)
T cd03001 19 DVWLV-EFYAPWCGHCKNLAPEWKKAAKAL---KGIVKVGAVDAD------------------VHQSLAQQYGVRG--FP 74 (103)
T ss_pred CcEEE-EEECCCCHHHHHHhHHHHHHHHHh---cCCceEEEEECc------------------chHHHHHHCCCCc--cC
Confidence 34666 555899999999999999998764 234333333322 1234567889888 89
Q ss_pred eEEE
Q 023845 122 QLVF 125 (276)
Q Consensus 122 q~vV 125 (276)
++++
T Consensus 75 ~~~~ 78 (103)
T cd03001 75 TIKV 78 (103)
T ss_pred EEEE
Confidence 8644
No 109
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=91.82 E-value=0.86 Score=40.42 Aligned_cols=90 Identities=12% Similarity=0.124 Sum_probs=55.2
Q ss_pred EecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccH-HHHHHHHHhCCCCCCcce-EEE
Q 023845 48 LFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTV-RQKAYVEALNLDTMFTPQ-LVF 125 (276)
Q Consensus 48 lFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~-Rq~~Y~~~~g~~~vYTPq-~vV 125 (276)
.|....|+.|=.....|.++.+++ ++..+++.+|- . .. +.-|.+.+ .+..-...+|.....+|+ |+|
T Consensus 75 ~FwaswCp~C~~e~P~L~~l~~~~-----g~~Vi~Vs~D~--~--~~--~~fPv~~dd~~~~~~~~~g~~~~~iPttfLI 143 (181)
T PRK13728 75 LFMQGHCPYCHQFDPVLKQLAQQY-----GFSVFPYTLDG--Q--GD--TAFPEALPAPPDVMQTFFPNIPVATPTTFLV 143 (181)
T ss_pred EEECCCCHhHHHHHHHHHHHHHHc-----CCEEEEEEeCC--C--CC--CCCceEecCchhHHHHHhCCCCCCCCeEEEE
Confidence 499999999999999999999876 24444444541 1 11 23344331 233335566743346898 777
Q ss_pred --cCeE----eccCCChhhHHHHHHcCCC
Q 023845 126 --QGRV----QCQGNDQDGMLSAIANAPK 148 (276)
Q Consensus 126 --nG~~----~~~g~~~~~~~~~i~~~~~ 148 (276)
||+. +.+..+.+.+...|.+..+
T Consensus 144 d~~G~i~~~~~~G~~~~~~L~~~I~~ll~ 172 (181)
T PRK13728 144 NVNTLEALPLLQGATDAAGFMARMDTVLQ 172 (181)
T ss_pred eCCCcEEEEEEECCCCHHHHHHHHHHHHh
Confidence 4643 2234457778777776554
No 110
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=91.79 E-value=0.5 Score=35.68 Aligned_cols=62 Identities=19% Similarity=0.180 Sum_probs=41.8
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcce
Q 023845 43 AVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQ 122 (276)
Q Consensus 43 ~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq 122 (276)
+++| .|++..|+.|=.....+.++++... ..+++..+.+..+- + +..+.+++++++ +|.
T Consensus 20 ~~~v-~f~a~~C~~C~~~~~~~~~~~~~~~-~~~~~~~~~id~~~------------~-----~~~~~~~~~i~~--~P~ 78 (105)
T cd02998 20 DVLV-EFYAPWCGHCKNLAPEYEKLAAVFA-NEDDVVIAKVDADE------------A-----NKDLAKKYGVSG--FPT 78 (105)
T ss_pred cEEE-EEECCCCHHHHhhChHHHHHHHHhC-CCCCEEEEEEECCC------------c-----chhhHHhCCCCC--cCE
Confidence 4555 5668999999888888888876541 12456665554431 0 356678889887 899
Q ss_pred EEE
Q 023845 123 LVF 125 (276)
Q Consensus 123 ~vV 125 (276)
+++
T Consensus 79 ~~~ 81 (105)
T cd02998 79 LKF 81 (105)
T ss_pred EEE
Confidence 776
No 111
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=91.69 E-value=0.18 Score=36.71 Aligned_cols=42 Identities=31% Similarity=0.447 Sum_probs=34.1
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeee
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVD 86 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVd 86 (276)
.++++|+.| +.+|++|......|.++.+++ ...+..+.+|+.
T Consensus 32 ~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~---~~~~~~~~i~~~ 73 (127)
T COG0526 32 GKPVLVDFW-APWCPPCRAEAPLLEELAEEY---GGDVEVVAVNVD 73 (127)
T ss_pred CceEEEEEE-cCcCHHHHhhchhHHHHHHHh---cCCcEEEEEECC
Confidence 667888866 999999999999999999865 225777777775
No 112
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=91.68 E-value=0.45 Score=43.39 Aligned_cols=83 Identities=17% Similarity=0.215 Sum_probs=52.8
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCc
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFT 120 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYT 120 (276)
.++++|+ |.+.+|++|-.....+.++++++ .+.+.... || .+......+++++.+ +
T Consensus 52 ~~~vlV~-FyApWC~~Ck~~~P~~e~la~~~---~~~v~~~~--VD----------------~~~~~~l~~~~~I~~--~ 107 (224)
T PTZ00443 52 TGPWFVK-FYAPWCSHCRKMAPAWERLAKAL---KGQVNVAD--LD----------------ATRALNLAKRFAIKG--Y 107 (224)
T ss_pred CCCEEEE-EECCCChHHHHHHHHHHHHHHHc---CCCeEEEE--ec----------------CcccHHHHHHcCCCc--C
Confidence 4567777 55789999999999999998865 23332222 22 122346788899988 6
Q ss_pred ceE--EEcCeEec--cC-CChhhHHHHHHcCC
Q 023845 121 PQL--VFQGRVQC--QG-NDQDGMLSAIANAP 147 (276)
Q Consensus 121 Pq~--vVnG~~~~--~g-~~~~~~~~~i~~~~ 147 (276)
|++ +-||+... .| .+.+++...+.+..
T Consensus 108 PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~ 139 (224)
T PTZ00443 108 PTLLLFDKGKMYQYEGGDRSTEKLAAFALGDF 139 (224)
T ss_pred CEEEEEECCEEEEeeCCCCCHHHHHHHHHHHH
Confidence 764 45676543 23 34666666666543
No 113
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=91.32 E-value=0.5 Score=35.72 Aligned_cols=65 Identities=12% Similarity=0.149 Sum_probs=40.7
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcce
Q 023845 43 AVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQ 122 (276)
Q Consensus 43 ~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq 122 (276)
++||. |.+.+|++|=.-...+.+++++.....+++..+.+..+- .....+.+++.. +|+
T Consensus 18 ~~lv~-f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~------------------~~~~~~~~~v~~--~Pt 76 (102)
T cd03005 18 NHFVK-FFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ------------------HRELCSEFQVRG--YPT 76 (102)
T ss_pred CEEEE-EECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC------------------ChhhHhhcCCCc--CCE
Confidence 46666 668899999988888988887653212355554443321 013456678877 887
Q ss_pred EE--EcCe
Q 023845 123 LV--FQGR 128 (276)
Q Consensus 123 ~v--VnG~ 128 (276)
++ -+|+
T Consensus 77 ~~~~~~g~ 84 (102)
T cd03005 77 LLLFKDGE 84 (102)
T ss_pred EEEEeCCC
Confidence 54 3554
No 114
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=91.27 E-value=1.4 Score=36.06 Aligned_cols=64 Identities=16% Similarity=0.137 Sum_probs=46.4
Q ss_pred eEEEEecCC--CCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcc
Q 023845 44 VLVELFSSQ--GCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTP 121 (276)
Q Consensus 44 vvVElFTSq--GCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTP 121 (276)
++|=+|.++ +|+.|=.-...|.+|++++ .+.+...-..+| .....+.++++++ +|
T Consensus 29 ~~v~~f~~~~~~cp~c~~i~P~leela~e~---~~~v~f~kVdid------------------~~~~la~~f~V~s--IP 85 (111)
T cd02965 29 DLVLLLAGDPVRFPEVLDVAVVLPELLKAF---PGRFRAAVVGRA------------------DEQALAARFGVLR--TP 85 (111)
T ss_pred CEEEEecCCcccCcchhhhHhHHHHHHHHC---CCcEEEEEEECC------------------CCHHHHHHcCCCc--CC
Confidence 566689999 5999999999999999986 334444444444 2247799999999 66
Q ss_pred eEE--EcCeEe
Q 023845 122 QLV--FQGRVQ 130 (276)
Q Consensus 122 q~v--VnG~~~ 130 (276)
+++ -||+..
T Consensus 86 Tli~fkdGk~v 96 (111)
T cd02965 86 ALLFFRDGRYV 96 (111)
T ss_pred EEEEEECCEEE
Confidence 644 478654
No 115
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=91.24 E-value=0.4 Score=36.32 Aligned_cols=64 Identities=13% Similarity=0.123 Sum_probs=41.2
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceE
Q 023845 44 VLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQL 123 (276)
Q Consensus 44 vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~ 123 (276)
.++=+|++.+|+.|=.....+.++.+.... ...+..+.++++- +-.....+++++.. +|++
T Consensus 19 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~~~----------------~~~~~~~~~~~i~~--~Pt~ 79 (104)
T cd02997 19 HVLVMFYAPWCGHCKKMKPEFTKAATELKE-DGKGVLAAVDCTK----------------PEHDALKEEYNVKG--FPTF 79 (104)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhh-CCceEEEEEECCC----------------CccHHHHHhCCCcc--ccEE
Confidence 556678888999999998888888765321 2345544454431 01244567778776 8887
Q ss_pred EEc
Q 023845 124 VFQ 126 (276)
Q Consensus 124 vVn 126 (276)
++-
T Consensus 80 ~~~ 82 (104)
T cd02997 80 KYF 82 (104)
T ss_pred EEE
Confidence 554
No 116
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=91.10 E-value=0.56 Score=36.73 Aligned_cols=58 Identities=14% Similarity=0.088 Sum_probs=39.5
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceE
Q 023845 44 VLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQL 123 (276)
Q Consensus 44 vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~ 123 (276)
++|=.|.+..|++|-.....|.++++++ +++..+.+..+ | ......+++++.. +|++
T Consensus 20 ~vlV~F~a~WC~~C~~~~p~l~~la~~~----~~~~~~~vd~~--------~---------~~~~l~~~~~V~~--~PT~ 76 (100)
T cd02999 20 YTAVLFYASWCPFSASFRPHFNALSSMF----PQIRHLAIEES--------S---------IKPSLLSRYGVVG--FPTI 76 (100)
T ss_pred EEEEEEECCCCHHHHhHhHHHHHHHHHh----ccCceEEEECC--------C---------CCHHHHHhcCCee--cCEE
Confidence 4555667889999999999999998865 24544444332 0 1124577889887 7875
Q ss_pred E
Q 023845 124 V 124 (276)
Q Consensus 124 v 124 (276)
+
T Consensus 77 ~ 77 (100)
T cd02999 77 L 77 (100)
T ss_pred E
Confidence 4
No 117
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=91.08 E-value=0.74 Score=35.01 Aligned_cols=62 Identities=13% Similarity=0.065 Sum_probs=44.9
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceE
Q 023845 44 VLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQL 123 (276)
Q Consensus 44 vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~ 123 (276)
.++=+|.+..|+.|-.....|.++++++ ..+|.-+...+ +.+...++.+|+..--.|++
T Consensus 14 ~~~~~f~~~~~~~~~~~~~~~~~vA~~~---~~~v~f~~vd~------------------~~~~~~~~~~~i~~~~~P~~ 72 (103)
T cd02982 14 PLLVLFYNKDDSESEELRERFKEVAKKF---KGKLLFVVVDA------------------DDFGRHLEYFGLKEEDLPVI 72 (103)
T ss_pred CEEEEEEcCChhhHHHHHHHHHHHHHHh---CCeEEEEEEch------------------HhhHHHHHHcCCChhhCCEE
Confidence 4555677888999999999999999986 44554444433 33456889999983349997
Q ss_pred EEc
Q 023845 124 VFQ 126 (276)
Q Consensus 124 vVn 126 (276)
++-
T Consensus 73 ~~~ 75 (103)
T cd02982 73 AII 75 (103)
T ss_pred EEE
Confidence 754
No 118
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=90.92 E-value=0.35 Score=49.40 Aligned_cols=97 Identities=13% Similarity=0.097 Sum_probs=61.6
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCC-------CCCCC---CCccccHHHHHHHHHh
Q 023845 44 VLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMG-------WKDPY---GSSQWTVRQKAYVEAL 113 (276)
Q Consensus 44 vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylG-------WkD~f---a~~~~t~Rq~~Y~~~~ 113 (276)
++|=.|.+.+|+.|=..-..|.+|.+++. .+++..|+++++.++... |.+.+ .-|...+.....++.+
T Consensus 58 pVvV~FWATWCppCk~emP~L~eL~~e~k--~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~f 135 (521)
T PRK14018 58 PTLIKFWASWCPLCLSELGETEKWAQDAK--FSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQSL 135 (521)
T ss_pred EEEEEEEcCCCHHHHHHHHHHHHHHHHhc--cCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHHc
Confidence 45556668999999999999999988652 346777777765543211 10000 1133445566778889
Q ss_pred CCCCCCcceE-EEc--CeEe--ccC-CChhhHHHHHH
Q 023845 114 NLDTMFTPQL-VFQ--GRVQ--CQG-NDQDGMLSAIA 144 (276)
Q Consensus 114 g~~~vYTPq~-vVn--G~~~--~~g-~~~~~~~~~i~ 144 (276)
+++. .|+. +|| |+.. ..| -+.+.+...|+
T Consensus 136 gV~g--iPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 136 NISV--YPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred CCCC--cCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 9887 9997 775 6543 233 34666777776
No 119
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=90.92 E-value=2.4 Score=36.26 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=29.3
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEe
Q 023845 42 GAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYH 84 (276)
Q Consensus 42 ~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~h 84 (276)
...||- |.+.+|+.|=.....|.++.+++ .-.|+++++.
T Consensus 51 ~~~lvn-FWAsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d 89 (153)
T TIGR02738 51 DYALVF-FYQSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLD 89 (153)
T ss_pred CCEEEE-EECCCChhHHHHHHHHHHHHHHc---CCcEEEEEeC
Confidence 344554 66679999999999999999876 3467777654
No 120
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=90.78 E-value=0.78 Score=37.31 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=34.0
Q ss_pred cCCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeee
Q 023845 40 RGGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVD 86 (276)
Q Consensus 40 ~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVd 86 (276)
.++++||-.|.+-.|+.|...-..|.++.+++ +++..+++-+|
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~----~~~~vi~Is~d 67 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKL----DNTVVLTISAD 67 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc----CCCEEEEEECC
Confidence 45689999999999999999999999988764 35556666554
No 121
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.40 E-value=1.2 Score=42.67 Aligned_cols=85 Identities=9% Similarity=0.063 Sum_probs=64.7
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcce
Q 023845 43 AVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQ 122 (276)
Q Consensus 43 ~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq 122 (276)
..||-+|.+..|..|-.-...|++|+.+| ...++-....+| +...-+.+||+++|.|=-
T Consensus 44 ~PVlV~fWap~~~~c~qL~p~Lekla~~~---~G~f~LakvN~D------------------~~p~vAaqfgiqsIPtV~ 102 (304)
T COG3118 44 VPVLVDFWAPWCGPCKQLTPTLEKLAAEY---KGKFKLAKVNCD------------------AEPMVAAQFGVQSIPTVY 102 (304)
T ss_pred CCeEEEecCCCCchHHHHHHHHHHHHHHh---CCceEEEEecCC------------------cchhHHHHhCcCcCCeEE
Confidence 35667999999999999999999999988 557777777666 345568999999977767
Q ss_pred EEEcCeEec--cCC-ChhhHHHHHHcCCC
Q 023845 123 LVFQGRVQC--QGN-DQDGMLSAIANAPK 148 (276)
Q Consensus 123 ~vVnG~~~~--~g~-~~~~~~~~i~~~~~ 148 (276)
.++||+..- .|. +++.+...|.+...
T Consensus 103 af~dGqpVdgF~G~qPesqlr~~ld~~~~ 131 (304)
T COG3118 103 AFKDGQPVDGFQGAQPESQLRQFLDKVLP 131 (304)
T ss_pred EeeCCcCccccCCCCcHHHHHHHHHHhcC
Confidence 889998654 233 35567777766554
No 122
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=90.29 E-value=1.7 Score=35.88 Aligned_cols=90 Identities=12% Similarity=0.105 Sum_probs=59.2
Q ss_pred hhhcCCceEEEEecCCCCC--CCH--HHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHH
Q 023845 37 EMRRGGAVLVELFSSQGCK--TSP--EAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEA 112 (276)
Q Consensus 37 ~~~~~~~vvVElFTSqGCs--sCP--~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~ 112 (276)
.......+||+.|..-+|. +|. .-...|.++++++-+ ..+|.....++| .....+++
T Consensus 22 ~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~-~~~v~~~kVD~d------------------~~~~La~~ 82 (120)
T cd03065 22 VLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLE-DKGIGFGLVDSK------------------KDAKVAKK 82 (120)
T ss_pred HHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhh-cCCCEEEEEeCC------------------CCHHHHHH
Confidence 3445567999999999995 497 555566666665411 235777777776 23577999
Q ss_pred hCCCCCCcceEEEcCeEe-ccCC-ChhhHHHHHHc
Q 023845 113 LNLDTMFTPQLVFQGRVQ-CQGN-DQDGMLSAIAN 145 (276)
Q Consensus 113 ~g~~~vYTPq~vVnG~~~-~~g~-~~~~~~~~i~~ 145 (276)
+|++++-|=-++-||+.. ..|. +.+.+...|++
T Consensus 83 ~~I~~iPTl~lfk~G~~v~~~G~~~~~~l~~~l~~ 117 (120)
T cd03065 83 LGLDEEDSIYVFKDDEVIEYDGEFAADTLVEFLLD 117 (120)
T ss_pred cCCccccEEEEEECCEEEEeeCCCCHHHHHHHHHH
Confidence 999995555567788732 3343 46666666664
No 123
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=90.17 E-value=0.94 Score=42.22 Aligned_cols=93 Identities=16% Similarity=0.213 Sum_probs=53.7
Q ss_pred cCCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCC
Q 023845 40 RGGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMF 119 (276)
Q Consensus 40 ~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vY 119 (276)
.++++||..|.| +|+.|=.....|.++++++ .-.|++++ +|. .+- ..|.... .+++ -++++|+..
T Consensus 165 ~~k~~Lv~F~As-wCp~C~~~~P~L~~la~~y---g~~Vi~Vs--vD~---~~~-~~fp~~~-~d~~--la~~~gV~~-- 229 (271)
T TIGR02740 165 AKKSGLFFFFKS-DCPYCHQQAPILQAFEDRY---GIEVLPVS--VDG---GPL-PGFPNAR-PDAG--QAQQLKIRT-- 229 (271)
T ss_pred cCCeEEEEEECC-CCccHHHHhHHHHHHHHHc---CcEEEEEe--CCC---Ccc-ccCCccc-CCHH--HHHHcCCCc--
Confidence 356777765554 8999999999999999876 23455554 442 110 0122111 1222 367889877
Q ss_pred cceE-EEcC--e-Ee--ccC-CChhhHHHHHHcCC
Q 023845 120 TPQL-VFQG--R-VQ--CQG-NDQDGMLSAIANAP 147 (276)
Q Consensus 120 TPq~-vVnG--~-~~--~~g-~~~~~~~~~i~~~~ 147 (276)
+|.+ +|+. . .. ..| -+.+.+...|....
T Consensus 230 vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~~a 264 (271)
T TIGR02740 230 VPAVFLADPDPNQFTPIGFGVMSADELVDRILLAA 264 (271)
T ss_pred CCeEEEEECCCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 9994 5552 2 11 223 34666777666543
No 124
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=89.15 E-value=0.19 Score=40.58 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=20.2
Q ss_pred EEEecCCCCCCCHHHHHHHHHh
Q 023845 46 VELFSSQGCKTSPEAEILVSRL 67 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l 67 (276)
|.+|++.+|++|..|.+||.+-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~ 22 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEAN 22 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc
Confidence 5799999999999999999974
No 125
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=89.06 E-value=0.43 Score=40.64 Aligned_cols=44 Identities=18% Similarity=0.049 Sum_probs=32.8
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeee
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVD 86 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVd 86 (276)
++.+||..|-...|+.|+..-..|.++.++.. ..+|..+++.+|
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~--~~~v~vv~Is~d 72 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFK--KLNAEVLGVSTD 72 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHH--HCCCEEEEEecC
Confidence 46788877778999999999888988877653 245666666565
No 126
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=88.92 E-value=1.8 Score=34.53 Aligned_cols=71 Identities=17% Similarity=0.317 Sum_probs=44.7
Q ss_pred CCCCCCC---HHHH---HHHHHhcc-cCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceE
Q 023845 51 SQGCKTS---PEAE---ILVSRLGR-GDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQL 123 (276)
Q Consensus 51 SqGCssC---P~Ad---~~l~~l~~-~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~ 123 (276)
.+=|.|| |.+. +||..+.+ +++ ..+ |.++|-|. -.|...+..+.|+++.--.-.|=|-+
T Consensus 6 e~~CASCVn~PsSkeTyeWL~aal~RKyp--~~~-----f~~~YiDi-------~~p~~~~~~~~~a~~I~ede~fYPlV 71 (93)
T PF07315_consen 6 EVICASCVNAPSSKETYEWLEAALKRKYP--DQP-----FEFTYIDI-------ENPPENDHDQQFAERILEDELFYPLV 71 (93)
T ss_dssp SS--GGGSSS--HHHHHHHHHHHHHHH-T--TS------EEEEEEET-------TT----HHHHHHHHHHHTTSS-SSEE
T ss_pred cccchhhcCCCCchhHHHHHHHHHhCcCC--CCc-----eEEEEEec-------CCCCccHHHHHHHHHHHhcccccceE
Confidence 4679999 6665 56765543 443 233 88888773 44544588899999998888999999
Q ss_pred EEcCeEeccCCC
Q 023845 124 VFQGRVQCQGND 135 (276)
Q Consensus 124 vVnG~~~~~g~~ 135 (276)
+|||+...-|..
T Consensus 72 ~i~~eiV~EGnp 83 (93)
T PF07315_consen 72 VINDEIVAEGNP 83 (93)
T ss_dssp EETTEEEEESS-
T ss_pred EECCEEEecCCc
Confidence 999988776654
No 127
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=88.55 E-value=1.1 Score=37.11 Aligned_cols=60 Identities=17% Similarity=0.086 Sum_probs=41.2
Q ss_pred cCCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCC
Q 023845 40 RGGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLD 116 (276)
Q Consensus 40 ~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~ 116 (276)
.++++||-.|.+-.|+.|+..-..|.++.++.. ..++..+++-+| -.+..++|.+..+..
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~--~~~v~vi~Is~d---------------~~~~~~~~~~~~~~~ 88 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELK--KAGVVVLGISTD---------------KPEKLSRFAEKELLN 88 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHH--HCCCEEEEEcCC---------------CHHHHHHHHHHhCCC
Confidence 446899999988999999988777777766542 234555555443 136667888888753
No 128
>PTZ00062 glutaredoxin; Provisional
Probab=88.42 E-value=1.3 Score=39.90 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=17.0
Q ss_pred HHHHHHHhCCCCCCcceEEEcCeEeccCC
Q 023845 106 QKAYVEALNLDTMFTPQLVFQGRVQCQGN 134 (276)
Q Consensus 106 q~~Y~~~~g~~~vYTPq~vVnG~~~~~g~ 134 (276)
|....+..|.++ +||++|||+ +++|.
T Consensus 157 ~~~l~~~sg~~T--vPqVfI~G~-~IGG~ 182 (204)
T PTZ00062 157 REELKVYSNWPT--YPQLYVNGE-LIGGH 182 (204)
T ss_pred HHHHHHHhCCCC--CCeEEECCE-EEcCh
Confidence 334444456666 799999996 45554
No 129
>PTZ00056 glutathione peroxidase; Provisional
Probab=88.36 E-value=2.6 Score=37.32 Aligned_cols=63 Identities=11% Similarity=0.134 Sum_probs=40.8
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCcc--ccHHHHHHHHHhCC
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQ--WTVRQKAYVEALNL 115 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~--~t~Rq~~Y~~~~g~ 115 (276)
.+++|| .|....|+.|..--..|.+|.+++. ..++..|++..+ .|.+++ -.+..+.|.+.+++
T Consensus 39 Gkvvlv-~fwAswC~~C~~e~p~L~~l~~~~~--~~g~~vvgv~~~---------~~~~~e~d~~e~~~~f~~~~~~ 103 (199)
T PTZ00056 39 NKVLMI-TNSASKCGLTKKHVDQMNRLHSVFN--PLGLEILAFPTS---------QFLNQEFPNTKDIRKFNDKNKI 103 (199)
T ss_pred CCEEEE-EEECCCCCChHHHHHHHHHHHHHHh--cCceEEEEecch---------hccCCCCCCHHHHHHHHHHcCC
Confidence 345555 6677899999887788888887763 346777777654 122221 23456667777664
No 130
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=88.07 E-value=0.94 Score=35.07 Aligned_cols=66 Identities=17% Similarity=0.195 Sum_probs=40.1
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCc
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFT 120 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYT 120 (276)
.++++ =.|.+.+|+.|-.....|.++++++.....++......++- .....+++++.+ +
T Consensus 15 ~~~vl-v~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~------------------~~~~~~~~~I~~--~ 73 (104)
T cd03000 15 EDIWL-VDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA------------------YSSIASEFGVRG--Y 73 (104)
T ss_pred CCeEE-EEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc------------------CHhHHhhcCCcc--c
Confidence 45555 45777899999988888888887542111233333333321 134567789888 7
Q ss_pred ceE-EEcC
Q 023845 121 PQL-VFQG 127 (276)
Q Consensus 121 Pq~-vVnG 127 (276)
|++ +++|
T Consensus 74 Pt~~l~~~ 81 (104)
T cd03000 74 PTIKLLKG 81 (104)
T ss_pred cEEEEEcC
Confidence 885 3444
No 131
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=87.91 E-value=1.7 Score=37.12 Aligned_cols=56 Identities=7% Similarity=0.072 Sum_probs=41.3
Q ss_pred cCCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCC
Q 023845 40 RGGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDT 117 (276)
Q Consensus 40 ~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~ 117 (276)
.+++||| .|...+|+.|-.-+..|.+|++++ .+.+..+-..|| ....++..+++++
T Consensus 22 ~~~lVVv-dF~A~WCgpCk~m~p~l~~la~~~---~~~~~~~kVDVD------------------e~~dla~~y~I~~ 77 (142)
T PLN00410 22 EERLVVI-RFGHDWDETCMQMDEVLASVAETI---KNFAVIYLVDIT------------------EVPDFNTMYELYD 77 (142)
T ss_pred CCCEEEE-EEECCCChhHHHHHHHHHHHHHHc---CCceEEEEEECC------------------CCHHHHHHcCccC
Confidence 3445555 566699999999999999999875 334555666666 3357899999885
No 132
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=87.86 E-value=0.26 Score=39.65 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=20.7
Q ss_pred EEEecCCCCCCCHHHHHHHHHhc
Q 023845 46 VELFSSQGCKTSPEAEILVSRLG 68 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~ 68 (276)
|.+|+..+|++|=.|.+||.+..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~ 23 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHG 23 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcC
Confidence 57999999999999999999743
No 133
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=87.60 E-value=2.6 Score=33.81 Aligned_cols=61 Identities=20% Similarity=0.122 Sum_probs=41.8
Q ss_pred ceEEEEecCCCCCC-CHHHHHHHHHhcccCCCCC-CCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhC
Q 023845 43 AVLVELFSSQGCKT-SPEAEILVSRLGRGDFELG-VPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALN 114 (276)
Q Consensus 43 ~vvVElFTSqGCss-CP~Ad~~l~~l~~~~~~~~-~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g 114 (276)
.++|=.|.+-+|++ |+..-..|.++.++..+.. .+|..|++..|+- ..-.+..++|.+.++
T Consensus 23 k~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~-----------~d~~~~~~~~~~~~~ 85 (142)
T cd02968 23 KPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPE-----------RDTPEVLKAYAKAFG 85 (142)
T ss_pred CEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCC-----------CCCHHHHHHHHHHhC
Confidence 35666777799998 9998888888877653111 2588888877641 111356788898887
No 134
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=87.40 E-value=2 Score=37.33 Aligned_cols=62 Identities=13% Similarity=0.108 Sum_probs=44.6
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcce
Q 023845 43 AVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQ 122 (276)
Q Consensus 43 ~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq 122 (276)
+||| .|.+.+|+.|=.-+..|.+|+.++ +.|.-+-++++ .. ..+..|++.. .|+
T Consensus 85 ~VVV-~Fya~wc~~Ck~m~~~l~~LA~~~----~~vkF~kVd~d------------------~~-~l~~~f~v~~--vPT 138 (175)
T cd02987 85 TVVV-HIYEPGIPGCAALNSSLLCLAAEY----PAVKFCKIRAS------------------AT-GASDEFDTDA--LPA 138 (175)
T ss_pred EEEE-EEECCCCchHHHHHHHHHHHHHHC----CCeEEEEEecc------------------ch-hhHHhCCCCC--CCE
Confidence 5555 567789999999999999999875 46655555554 11 5678899998 676
Q ss_pred --EEEcCeEe
Q 023845 123 --LVFQGRVQ 130 (276)
Q Consensus 123 --~vVnG~~~ 130 (276)
++-||+..
T Consensus 139 lllyk~G~~v 148 (175)
T cd02987 139 LLVYKGGELI 148 (175)
T ss_pred EEEEECCEEE
Confidence 44577654
No 135
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=87.40 E-value=1.7 Score=33.77 Aligned_cols=67 Identities=18% Similarity=0.171 Sum_probs=42.6
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCC---CCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCC
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFEL---GVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDT 117 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~---~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~ 117 (276)
.+++|| .|.+.+|++|-.....+.+++++.... ...+....+..| ..+...+++++.+
T Consensus 18 ~~~vlv-~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d------------------~~~~l~~~~~v~~ 78 (108)
T cd02996 18 AELVLV-NFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCD------------------KESDIADRYRINK 78 (108)
T ss_pred CCEEEE-EEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECC------------------CCHHHHHhCCCCc
Confidence 445555 455779999999998898887642100 124555555554 1245678899998
Q ss_pred CCcceEE--EcCe
Q 023845 118 MFTPQLV--FQGR 128 (276)
Q Consensus 118 vYTPq~v--VnG~ 128 (276)
+|+++ -||+
T Consensus 79 --~Ptl~~~~~g~ 89 (108)
T cd02996 79 --YPTLKLFRNGM 89 (108)
T ss_pred --CCEEEEEeCCc
Confidence 78754 4554
No 136
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.35 E-value=1.9 Score=37.28 Aligned_cols=85 Identities=14% Similarity=0.099 Sum_probs=54.8
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCc
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFT 120 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYT 120 (276)
++||+| .|..+.|..|---...|+++..++ ...+---...+| ---..+..|+++.+-|
T Consensus 61 ~~PVlV-dF~A~WCgPCk~l~P~l~~~~~~~---~g~~k~~kvdtD------------------~~~ela~~Y~I~avPt 118 (150)
T KOG0910|consen 61 DVPVLV-DFHAEWCGPCKMLGPILEELVSEY---AGKFKLYKVDTD------------------EHPELAEDYEISAVPT 118 (150)
T ss_pred CCCEEE-EEecCcCccHhHhhHHHHHHHHhh---cCeEEEEEEccc------------------cccchHhhcceeeeeE
Confidence 345555 588999999999999999998865 233333333333 2234577788888444
Q ss_pred ceEEEcCeEe--c-cCCChhhHHHHHHcCC
Q 023845 121 PQLVFQGRVQ--C-QGNDQDGMLSAIANAP 147 (276)
Q Consensus 121 Pq~vVnG~~~--~-~g~~~~~~~~~i~~~~ 147 (276)
=-++-||+.. + +.-+++.+.+.|.+..
T Consensus 119 vlvfknGe~~d~~vG~~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 119 VLVFKNGEKVDRFVGAVPKEQLRSLIKKFL 148 (150)
T ss_pred EEEEECCEEeeeecccCCHHHHHHHHHHHh
Confidence 4456688765 2 3335777888887654
No 137
>PTZ00062 glutaredoxin; Provisional
Probab=87.34 E-value=3.3 Score=37.31 Aligned_cols=75 Identities=12% Similarity=-0.009 Sum_probs=55.8
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcce
Q 023845 43 AVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQ 122 (276)
Q Consensus 43 ~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq 122 (276)
-.+|=.|++.+|+.|..-+.+|.+|++++ +++.- +.|+ +. +++.. +|.
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~----~~~~F--~~V~-----------~d-------------~~V~~--vPt 65 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDF----PSLEF--YVVN-----------LA-------------DANNE--YGV 65 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHC----CCcEE--EEEc-----------cc-------------cCccc--ceE
Confidence 45677899999999999999999999975 45433 4444 10 88888 666
Q ss_pred EE--EcCeEec--cCCChhhHHHHHHcCCCC
Q 023845 123 LV--FQGRVQC--QGNDQDGMLSAIANAPKF 149 (276)
Q Consensus 123 ~v--VnG~~~~--~g~~~~~~~~~i~~~~~~ 149 (276)
|+ =||+..- .|.+..++...|+.....
T Consensus 66 fv~~~~g~~i~r~~G~~~~~~~~~~~~~~~~ 96 (204)
T PTZ00062 66 FEFYQNSQLINSLEGCNTSTLVSFIRGWAQK 96 (204)
T ss_pred EEEEECCEEEeeeeCCCHHHHHHHHHHHcCC
Confidence 54 4776543 588899999999887653
No 138
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=87.14 E-value=1 Score=40.21 Aligned_cols=42 Identities=19% Similarity=0.323 Sum_probs=29.5
Q ss_pred cHHHHHHHHHhCCCCCCcceEEEcCeEeccCCChhhHHHHHHcC
Q 023845 103 TVRQKAYVEALNLDTMFTPQLVFQGRVQCQGNDQDGMLSAIANA 146 (276)
Q Consensus 103 t~Rq~~Y~~~~g~~~vYTPq~vVnG~~~~~g~~~~~~~~~i~~~ 146 (276)
.++....++.+|+.. ||.++|||....+-.+.+++...|...
T Consensus 201 i~~~~~~a~~~gv~g--TPt~~v~~~~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 201 IAKNYKLAQQLGVNG--TPTFIVNGKLVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHHHHHHhcCCCc--CCeEEECCeeecCCCCHHHHHHHHHHh
Confidence 345556667777666 999999998444444567788777654
No 139
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=87.07 E-value=0.34 Score=38.16 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=21.4
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcc
Q 023845 46 VELFSSQGCKTSPEAEILVSRLGR 69 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~~ 69 (276)
|++|++.+|++|=.|.++|.+..-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i 24 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGI 24 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCC
Confidence 579999999999999999998544
No 140
>PRK13191 putative peroxiredoxin; Provisional
Probab=87.07 E-value=1 Score=40.55 Aligned_cols=105 Identities=12% Similarity=0.048 Sum_probs=66.1
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCC--------CCCCccccHHHHHHHHH
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKD--------PYGSSQWTVRQKAYVEA 112 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD--------~fa~~~~t~Rq~~Y~~~ 112 (276)
++.+||=.|-...|+.|+..-..|+++..+..+..-.||+++..-.| .+..|.+ .+.-|-.++-++..++.
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~-~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNI-SHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHH-HHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 45677778999999999998888888876543223356666654433 2345543 23335566667888888
Q ss_pred hCCC-----CCCcce-EEEcC--eEe-------ccCCChhhHHHHHHcC
Q 023845 113 LNLD-----TMFTPQ-LVFQG--RVQ-------CQGNDQDGMLSAIANA 146 (276)
Q Consensus 113 ~g~~-----~vYTPq-~vVnG--~~~-------~~g~~~~~~~~~i~~~ 146 (276)
+|+- ....|. ||||. +.. ..|++.+++.+.|++.
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8863 223455 78863 221 2566677777777654
No 141
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=86.75 E-value=2.6 Score=34.19 Aligned_cols=68 Identities=12% Similarity=0.073 Sum_probs=43.9
Q ss_pred cCCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHH-HHhCCCCC
Q 023845 40 RGGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYV-EALNLDTM 118 (276)
Q Consensus 40 ~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~-~~~g~~~v 118 (276)
..+++|| .|...+|++|-.....+.+++++. .+.|......+|- + .... +++++.++
T Consensus 28 ~~~~vlV-~FyA~WC~~Ck~l~p~~~~la~~~---~~~v~~~~Vd~d~----------------~--~~l~~~~~~I~~~ 85 (113)
T cd03006 28 DAEVSLV-MYYAPWDAQSQAARQEFEQVAQKL---SDQVLFVAINCWW----------------P--QGKCRKQKHFFYF 85 (113)
T ss_pred CCCEEEE-EEECCCCHHHHHHHHHHHHHHHHh---cCCeEEEEEECCC----------------C--hHHHHHhcCCccc
Confidence 3344555 477999999999999999999875 3455555565541 1 2234 46888883
Q ss_pred CcceEEEcCeE
Q 023845 119 FTPQLVFQGRV 129 (276)
Q Consensus 119 YTPq~vVnG~~ 129 (276)
-|=.++.||+.
T Consensus 86 PTl~lf~~g~~ 96 (113)
T cd03006 86 PVIHLYYRSRG 96 (113)
T ss_pred CEEEEEECCcc
Confidence 33335566663
No 142
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=86.58 E-value=3.8 Score=29.30 Aligned_cols=62 Identities=18% Similarity=0.217 Sum_probs=38.5
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceEEE
Q 023845 46 VELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQLVF 125 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~vV 125 (276)
++||++..|++|=.+..+|+++.-.+ .++ .++.++ . ...+..|.+...... +|.++.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~-----e~~----~i~~~~---------~---~~~~~~~~~~~p~~~--vP~l~~ 57 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLEL-----NLK----EVNLMK---------G---EHLKPEFLKLNPQHT--VPTLVD 57 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCC-----EEE----EecCcc---------C---CcCCHHHHhhCcCCC--CCEEEE
Confidence 47999999999999999999876532 221 233211 0 111234555444444 899998
Q ss_pred cCeEe
Q 023845 126 QGRVQ 130 (276)
Q Consensus 126 nG~~~ 130 (276)
+|...
T Consensus 58 ~~~~l 62 (74)
T cd03045 58 NGFVL 62 (74)
T ss_pred CCEEE
Confidence 87543
No 143
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=86.54 E-value=2.4 Score=28.62 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=20.9
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcc
Q 023845 46 VELFSSQGCKTSPEAEILVSRLGR 69 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~~ 69 (276)
++||+..+|+.|-.+..+|....-
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i 24 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGL 24 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCC
Confidence 379999999999999999987654
No 144
>PRK15000 peroxidase; Provisional
Probab=86.49 E-value=0.98 Score=40.07 Aligned_cols=105 Identities=13% Similarity=0.206 Sum_probs=64.1
Q ss_pred cCCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCC---------CCCCccccHHHHHHH
Q 023845 40 RGGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKD---------PYGSSQWTVRQKAYV 110 (276)
Q Consensus 40 ~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD---------~fa~~~~t~Rq~~Y~ 110 (276)
.++.+||-.|-+-.|+.||..-..|.++.++.....=.||+++..-.| -+.-|+. ++.-|-.++-++..+
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~-~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia 111 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEF-VHNAWRNTPVDKGGIGPVKYAMVADVKREIQ 111 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHH-HHHHHHhhHHHhCCccccCceEEECCCcHHH
Confidence 356899999999999999998888887776543222345555544222 1233432 233445666667788
Q ss_pred HHhCCC----CCCcce-EEEcC--eE-------eccCCChhhHHHHHHc
Q 023845 111 EALNLD----TMFTPQ-LVFQG--RV-------QCQGNDQDGMLSAIAN 145 (276)
Q Consensus 111 ~~~g~~----~vYTPq-~vVnG--~~-------~~~g~~~~~~~~~i~~ 145 (276)
+.+|+. .+..|. ++||- +. ..+|++.+++.+.|++
T Consensus 112 ~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 112 KAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 888864 224676 77773 21 2255566777666654
No 145
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=86.46 E-value=1.3 Score=38.45 Aligned_cols=86 Identities=10% Similarity=0.077 Sum_probs=49.6
Q ss_pred cCCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCC------CCCCccccHHHHHHHHHh
Q 023845 40 RGGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKD------PYGSSQWTVRQKAYVEAL 113 (276)
Q Consensus 40 ~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD------~fa~~~~t~Rq~~Y~~~~ 113 (276)
.++++||-.|-+-.|+.|+..-..|.++.++.....-.||+++..-.+ ...-|+| .+.-|-.++.+...++.+
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~-~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~ 108 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHF-VHKAWHDTSEAIGKITYPMLGDPTGVLTRNF 108 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHH-HHHHHHhhhhhccCcceeEEECCccHHHHHh
Confidence 345788888879999999987777776655432112356666643211 0011111 122234555567778888
Q ss_pred CCC----CCCcc-eEEEc
Q 023845 114 NLD----TMFTP-QLVFQ 126 (276)
Q Consensus 114 g~~----~vYTP-q~vVn 126 (276)
|+. .+..| .+|||
T Consensus 109 gv~~~~~g~~~p~tfiID 126 (187)
T TIGR03137 109 GVLIEEAGLADRGTFVID 126 (187)
T ss_pred CCcccCCCceeeEEEEEC
Confidence 864 22357 48886
No 146
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=86.07 E-value=6.3 Score=36.26 Aligned_cols=28 Identities=11% Similarity=0.094 Sum_probs=23.8
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHHhcc
Q 023845 42 GAVLVELFSSQGCKTSPEAEILVSRLGR 69 (276)
Q Consensus 42 ~~vvVElFTSqGCssCP~Ad~~l~~l~~ 69 (276)
....|-+||.-.||+|=..+..+.++.+
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~ 144 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVD 144 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhh
Confidence 4577888999999999999998888765
No 147
>PRK12559 transcriptional regulator Spx; Provisional
Probab=85.82 E-value=0.49 Score=39.48 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=21.0
Q ss_pred EEEecCCCCCCCHHHHHHHHHhc
Q 023845 46 VELFSSQGCKTSPEAEILVSRLG 68 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~ 68 (276)
|.+|+..+|++|-.|.+||.+-.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~g 24 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQ 24 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcC
Confidence 67999999999999999999754
No 148
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=85.61 E-value=0.51 Score=39.25 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=21.6
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcc
Q 023845 46 VELFSSQGCKTSPEAEILVSRLGR 69 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~~ 69 (276)
|.+|+..+|++|-.|.+||.+..-
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi 25 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDI 25 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCC
Confidence 789999999999999999997543
No 149
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=85.48 E-value=2.5 Score=29.83 Aligned_cols=24 Identities=17% Similarity=0.355 Sum_probs=20.9
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcc
Q 023845 46 VELFSSQGCKTSPEAEILVSRLGR 69 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~~ 69 (276)
+.||++..|++|=.+..+|.+..-
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l 24 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGI 24 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCC
Confidence 479999999999999999988754
No 150
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=85.07 E-value=0.6 Score=37.65 Aligned_cols=23 Identities=17% Similarity=0.455 Sum_probs=21.0
Q ss_pred EEEecCCCCCCCHHHHHHHHHhc
Q 023845 46 VELFSSQGCKTSPEAEILVSRLG 68 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~ 68 (276)
|.+|++.+|++|-.|.++|.+..
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~g 24 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQ 24 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCC
Confidence 78999999999999999999753
No 151
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=85.07 E-value=4.6 Score=32.62 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=20.2
Q ss_pred EEEecCCCCCCCHHHHHHHHHhc
Q 023845 46 VELFSSQGCKTSPEAEILVSRLG 68 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~ 68 (276)
|-+|.+.+|++|=.|.+||.+-.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~ 23 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKG 23 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCC
Confidence 35899999999999999999743
No 152
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=84.50 E-value=1.9 Score=36.38 Aligned_cols=38 Identities=24% Similarity=0.345 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCCCCcceEEEcCeEeccCCC-hhhHHHHH
Q 023845 104 VRQKAYVEALNLDTMFTPQLVFQGRVQCQGND-QDGMLSAI 143 (276)
Q Consensus 104 ~Rq~~Y~~~~g~~~vYTPq~vVnG~~~~~g~~-~~~~~~~i 143 (276)
++..+.+..+|+.+ ||.+||||+..+.|.+ .+.+.++|
T Consensus 154 ~~~~~~a~~~gv~G--vP~~vv~g~~~~~G~~~~~~l~~~l 192 (193)
T PF01323_consen 154 EEDTAEARQLGVFG--VPTFVVNGKYRFFGADRLDELEDAL 192 (193)
T ss_dssp HHHHHHHHHTTCSS--SSEEEETTTEEEESCSSHHHHHHHH
T ss_pred HHHHHHHHHcCCcc--cCEEEECCEEEEECCCCHHHHHHHh
Confidence 44556678889888 9999999996666766 55555554
No 153
>PF13728 TraF: F plasmid transfer operon protein
Probab=83.65 E-value=2.3 Score=38.29 Aligned_cols=70 Identities=14% Similarity=0.222 Sum_probs=43.2
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCc
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFT 120 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYT 120 (276)
++--|+ +|.+..|+.|-.....|..+++++ +=.|++++..-.-- +.|.....+ ..-++++|+. +|
T Consensus 120 ~~~gL~-~F~~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~~------~~fp~~~~~---~g~~~~l~v~--~~ 184 (215)
T PF13728_consen 120 QKYGLF-FFYRSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGRPI------PSFPNPRPD---PGQAKRLGVK--VT 184 (215)
T ss_pred hCeEEE-EEEcCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCCCC------cCCCCCCCC---HHHHHHcCCC--cC
Confidence 445555 455559999999999999999988 23566655432210 122222222 2346788986 59
Q ss_pred ceEEE
Q 023845 121 PQLVF 125 (276)
Q Consensus 121 Pq~vV 125 (276)
|.+++
T Consensus 185 Pal~L 189 (215)
T PF13728_consen 185 PALFL 189 (215)
T ss_pred CEEEE
Confidence 99443
No 154
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=83.43 E-value=4 Score=33.88 Aligned_cols=66 Identities=15% Similarity=0.156 Sum_probs=42.0
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHH-hCCC
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEA-LNLD 116 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~-~g~~ 116 (276)
++++||. |....|+.|-..-.-|.++.+++. ..+|..|++..+.- |= ..+.-.+..++|.+. +++.
T Consensus 22 Gk~vvv~-~~as~C~~c~~~~~~l~~l~~~~~--~~~~~v~~i~~~~~---~~----~~~d~~~~~~~f~~~~~~~~ 88 (153)
T TIGR02540 22 GKVSLVV-NVASECGFTDQNYRALQELHRELG--PSHFNVLAFPCNQF---GE----SEPDSSKEIESFARRNYGVT 88 (153)
T ss_pred CCEEEEE-EeCCCCCchhhhHHHHHHHHHHHh--hCCeEEEEEecccc---cc----CCCCCHHHHHHHHHHhcCCC
Confidence 3455555 778899999888878888877663 34788888875421 10 111224556778875 6753
No 155
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=82.84 E-value=3.2 Score=45.74 Aligned_cols=100 Identities=14% Similarity=0.135 Sum_probs=61.1
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCC---------CCCCCCCccccHHHHHHHHHh
Q 023845 43 AVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMG---------WKDPYGSSQWTVRQKAYVEAL 113 (276)
Q Consensus 43 ~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylG---------WkD~fa~~~~t~Rq~~Y~~~~ 113 (276)
.++|=.|...+|+.|-.....|.+|.+++. ..++..|++|.+.+|.-. .++.+.-|...+.+....+.+
T Consensus 421 K~vll~FWAsWC~pC~~e~P~L~~l~~~y~--~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 421 KVVILDFWTYCCINCMHVLPDLEFLEKKYK--DQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CEEEEEEECCcChhHHhHhHHHHHHHHHcC--CCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 344555666699999999999999998763 346888888865443211 122233333344445566778
Q ss_pred CCCCCCcce-EEE--cCeEec--cCC-ChhhHHHHHHcC
Q 023845 114 NLDTMFTPQ-LVF--QGRVQC--QGN-DQDGMLSAIANA 146 (276)
Q Consensus 114 g~~~vYTPq-~vV--nG~~~~--~g~-~~~~~~~~i~~~ 146 (276)
++.. +|+ ++| ||+... .|. ..+.+...|++.
T Consensus 499 ~V~~--iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 499 GVSS--WPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAA 535 (1057)
T ss_pred CCCc--cceEEEECCCCeEEEEEecccCHHHHHHHHHHH
Confidence 8877 898 556 455432 232 355666666644
No 156
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=82.31 E-value=5.1 Score=34.12 Aligned_cols=65 Identities=15% Similarity=0.147 Sum_probs=45.5
Q ss_pred cCCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCC
Q 023845 40 RGGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMF 119 (276)
Q Consensus 40 ~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vY 119 (276)
.++++||..|.|-.|+.|+.--..|.++.++. .++..+++.+|- ..-+++|.+..++..
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~----~~~~vv~vs~D~---------------~~~~~~f~~~~~~~~-- 101 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAEL----DNTVVLCISADL---------------PFAQKRFCGAEGLEN-- 101 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHc----CCcEEEEEeCCC---------------HHHHHHHHHhCCCCC--
Confidence 35689999999999999999888888887652 356666665551 234677888877542
Q ss_pred cceEEEc
Q 023845 120 TPQLVFQ 126 (276)
Q Consensus 120 TPq~vVn 126 (276)
+.++.|
T Consensus 102 -~~~lsD 107 (167)
T PRK00522 102 -VITLSD 107 (167)
T ss_pred -ceEeec
Confidence 345555
No 157
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=82.23 E-value=3.9 Score=41.52 Aligned_cols=62 Identities=10% Similarity=0.075 Sum_probs=44.4
Q ss_pred cCCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCC
Q 023845 40 RGGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMF 119 (276)
Q Consensus 40 ~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vY 119 (276)
-.++|.+.+|++.+|..|.....+|.+|+.- .+. | ++.+.|. .++ ...++.+++..
T Consensus 364 l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~----s~~-i----~~~~~~~-----------~~~--~~~~~~~~v~~-- 419 (555)
T TIGR03143 364 LENPVTLLLFLDGSNEKSAELQSFLGEFASL----SEK-L----NSEAVNR-----------GEE--PESETLPKITK-- 419 (555)
T ss_pred cCCCEEEEEEECCCchhhHHHHHHHHHHHhc----CCc-E----EEEEecc-----------ccc--hhhHhhcCCCc--
Confidence 3568999999999999999999999999974 344 2 2222221 122 44567778775
Q ss_pred cceEEE
Q 023845 120 TPQLVF 125 (276)
Q Consensus 120 TPq~vV 125 (276)
+|.++|
T Consensus 420 ~P~~~i 425 (555)
T TIGR03143 420 LPTVAL 425 (555)
T ss_pred CCEEEE
Confidence 899998
No 158
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=82.14 E-value=5.5 Score=29.25 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=21.3
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcc
Q 023845 46 VELFSSQGCKTSPEAEILVSRLGR 69 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~~ 69 (276)
+.||++..|++|=.+..+|.++.-
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi 25 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELEL 25 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCC
Confidence 579999999999999999998754
No 159
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=82.09 E-value=4 Score=36.17 Aligned_cols=60 Identities=13% Similarity=0.074 Sum_probs=42.6
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcce
Q 023845 43 AVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQ 122 (276)
Q Consensus 43 ~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq 122 (276)
+||| .|...+|+.|-.-+..|.+|+.++ +.+.-+.+.++ + -...+++.. .|+
T Consensus 104 ~VVV-~Fya~wc~~C~~m~~~l~~LA~k~----~~vkFvkI~ad--------------------~-~~~~~~i~~--lPT 155 (192)
T cd02988 104 WVVV-HLYKDGIPLCRLLNQHLSELARKF----PDTKFVKIIST--------------------Q-CIPNYPDKN--LPT 155 (192)
T ss_pred EEEE-EEECCCCchHHHHHHHHHHHHHHC----CCCEEEEEEhH--------------------H-hHhhCCCCC--CCE
Confidence 4555 567789999999999999999975 35655555554 1 146789888 666
Q ss_pred --EEEcCeEe
Q 023845 123 --LVFQGRVQ 130 (276)
Q Consensus 123 --~vVnG~~~ 130 (276)
++-||...
T Consensus 156 lliyk~G~~v 165 (192)
T cd02988 156 ILVYRNGDIV 165 (192)
T ss_pred EEEEECCEEE
Confidence 44566543
No 160
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=79.98 E-value=3.1 Score=32.40 Aligned_cols=58 Identities=16% Similarity=0.177 Sum_probs=43.3
Q ss_pred cCCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhC
Q 023845 40 RGGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALN 114 (276)
Q Consensus 40 ~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g 114 (276)
.++++||=.|.+-+|+.|...-.-|.++..++. ..++-.++++.|- .+..+.+.+..+
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~--~~~~~vi~is~d~---------------~~~~~~~~~~~~ 81 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYK--DKGVQVIGISTDD---------------PEEIKQFLEEYG 81 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHH--TTTEEEEEEESSS---------------HHHHHHHHHHHT
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhc--cceEEeeeccccc---------------ccchhhhhhhhc
Confidence 447888888888899999888777888776542 3478888887773 346677777777
No 161
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=79.31 E-value=7.7 Score=37.19 Aligned_cols=85 Identities=14% Similarity=0.223 Sum_probs=54.1
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceE
Q 023845 44 VLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQL 123 (276)
Q Consensus 44 vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~ 123 (276)
+++=+|++.+|++|-.....+.++++......++|....+..+ ......+++++.+ +|++
T Consensus 20 ~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~------------------~~~~l~~~~~i~~--~Pt~ 79 (462)
T TIGR01130 20 FVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDAT------------------EEKDLAQKYGVSG--YPTL 79 (462)
T ss_pred CEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECC------------------CcHHHHHhCCCcc--ccEE
Confidence 4556678889999998887777776543212345666666544 1245678889888 7875
Q ss_pred --EEcCeE---eccC-CChhhHHHHHHcCCC
Q 023845 124 --VFQGRV---QCQG-NDQDGMLSAIANAPK 148 (276)
Q Consensus 124 --vVnG~~---~~~g-~~~~~~~~~i~~~~~ 148 (276)
+-+|+. ...| .+...+...|.+...
T Consensus 80 ~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 80 KIFRNGEDSVSDYNGPRDADGIVKYMKKQSG 110 (462)
T ss_pred EEEeCCccceeEecCCCCHHHHHHHHHHhcC
Confidence 344653 2333 346667777776553
No 162
>PRK13189 peroxiredoxin; Provisional
Probab=78.88 E-value=3.2 Score=37.47 Aligned_cols=105 Identities=10% Similarity=0.084 Sum_probs=62.3
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCC--------CCCccccHHHHHHHHH
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDP--------YGSSQWTVRQKAYVEA 112 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~--------fa~~~~t~Rq~~Y~~~ 112 (276)
++.++|=.|-+..|+-|+.--..|.++..+..+..-.||+++....| .+..|.+. +.-|-..+..+..++.
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~-~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVF-SHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHH-HHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 45688888999999999987777777765432122345555544332 23344432 2223455556677788
Q ss_pred hCCCC-----CCcce-EEEc--CeE---ec----cCCChhhHHHHHHcC
Q 023845 113 LNLDT-----MFTPQ-LVFQ--GRV---QC----QGNDQDGMLSAIANA 146 (276)
Q Consensus 113 ~g~~~-----vYTPq-~vVn--G~~---~~----~g~~~~~~~~~i~~~ 146 (276)
+|+.. ...|. |+|| |+. +. .|.+.+++.+.|++.
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 88542 23454 7887 332 11 455667777777654
No 163
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=78.85 E-value=5.4 Score=35.15 Aligned_cols=106 Identities=15% Similarity=0.090 Sum_probs=62.3
Q ss_pred cCCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecc-cCCCCCCC------CCCccccHHHHHHHHH
Q 023845 40 RGGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYW-DYMGWKDP------YGSSQWTVRQKAYVEA 112 (276)
Q Consensus 40 ~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYW-DylGWkD~------fa~~~~t~Rq~~Y~~~ 112 (276)
..+++||=.|-+..|+.|+.--..|.++.++.. ..++..+++-+|.= .+.-|.+. +.-|-.++-+...++.
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~--~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ 107 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQ--KLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRN 107 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHH--hCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHH
Confidence 345788888889999999988777877776543 23444444445532 12233322 1224456667788888
Q ss_pred hCCC----CCCcce-EEEc--CeEe-------ccCCChhhHHHHHHcCC
Q 023845 113 LNLD----TMFTPQ-LVFQ--GRVQ-------CQGNDQDGMLSAIANAP 147 (276)
Q Consensus 113 ~g~~----~vYTPq-~vVn--G~~~-------~~g~~~~~~~~~i~~~~ 147 (276)
+|+. .+..|. +||| |+.. ..|.+.+++.+.|++.+
T Consensus 108 ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq 156 (187)
T PRK10382 108 FDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ 156 (187)
T ss_pred cCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 8862 333466 7776 4422 23445666666665443
No 164
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=78.71 E-value=8.4 Score=28.85 Aligned_cols=41 Identities=10% Similarity=0.054 Sum_probs=27.7
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEee
Q 023845 44 VLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHV 85 (276)
Q Consensus 44 vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hV 85 (276)
.++=+|.+.+|+.|=.....+.++++.... .+++....+..
T Consensus 20 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~ 60 (104)
T cd02995 20 DVLVEFYAPWCGHCKALAPIYEELAEKLKG-DDNVVIAKMDA 60 (104)
T ss_pred cEEEEEECCCCHHHHHHhhHHHHHHHHhcC-CCCEEEEEEeC
Confidence 445567778999999999999999876421 23455544444
No 165
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=77.58 E-value=5 Score=35.35 Aligned_cols=104 Identities=9% Similarity=0.029 Sum_probs=60.2
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCC--------CCCCccccHHHHHHHHHh
Q 023845 42 GAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKD--------PYGSSQWTVRQKAYVEAL 113 (276)
Q Consensus 42 ~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD--------~fa~~~~t~Rq~~Y~~~~ 113 (276)
+.+||=.|-...|+.|+.--..|.++.++..+..-.||+|+..-.+ .+..|.+ .+.-|-..+-....++.+
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~-~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~y 104 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVE-SHIKWIEDIEEYTGVEIPFPIIADPDREVAKLL 104 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHH-HHHHHHhhHHHhcCCCCceeEEECchHHHHHHc
Confidence 4566668999999999988888887766542222345555543221 1222332 223344555566778888
Q ss_pred CCCCC--Ccc-----eEEEcCe--Eec-------cCCChhhHHHHHHcC
Q 023845 114 NLDTM--FTP-----QLVFQGR--VQC-------QGNDQDGMLSAIANA 146 (276)
Q Consensus 114 g~~~v--YTP-----q~vVnG~--~~~-------~g~~~~~~~~~i~~~ 146 (276)
|+... ..| .+|||.. ... .|.+.+++.+.|.+.
T Consensus 105 g~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 105 GMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred CCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 86421 123 5888743 221 255566777777654
No 166
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=77.47 E-value=5.8 Score=31.81 Aligned_cols=44 Identities=23% Similarity=0.221 Sum_probs=32.6
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeee
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVD 86 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVd 86 (276)
++++||=.|.+-+|+.|...-..|.++.++.. ..+|..+++..|
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~--~~~v~vv~V~~~ 66 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELD--ALGVELVAVGPE 66 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHH--hcCeEEEEEeCC
Confidence 45777778888999999988888888876542 245666666665
No 167
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=76.74 E-value=4.4 Score=37.87 Aligned_cols=106 Identities=15% Similarity=0.168 Sum_probs=64.7
Q ss_pred cCCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCC---------CCCCccccHHHHHHH
Q 023845 40 RGGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKD---------PYGSSQWTVRQKAYV 110 (276)
Q Consensus 40 ~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD---------~fa~~~~t~Rq~~Y~ 110 (276)
.++.+|+=.|-...|+-|+.--..|.++.++..+..-.||+++... -+.+.-|++ .+.-|-.++-....+
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds-~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~ia 175 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDS-PFSHKAWKELDVRQGGVSPLKFPLFSDISREVS 175 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC-HHHHHHHHhhhhhhccccCcceEEEEcCChHHH
Confidence 3457888888899999999877777776655422222455555433 233445554 233455666667888
Q ss_pred HHhCCCC---CCcce-EEEc--CeEe-------ccCCChhhHHHHHHcC
Q 023845 111 EALNLDT---MFTPQ-LVFQ--GRVQ-------CQGNDQDGMLSAIANA 146 (276)
Q Consensus 111 ~~~g~~~---vYTPq-~vVn--G~~~-------~~g~~~~~~~~~i~~~ 146 (276)
+.+|+.. +..|. +||| |+.. ..|.+.+++.+.|++.
T Consensus 176 kayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 176 KSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 9999642 23565 7886 3332 2455667777766644
No 168
>PRK13599 putative peroxiredoxin; Provisional
Probab=76.51 E-value=4.3 Score=36.51 Aligned_cols=104 Identities=13% Similarity=0.130 Sum_probs=61.8
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCC--------CCCCccccHHHHHHHHH
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKD--------PYGSSQWTVRQKAYVEA 112 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD--------~fa~~~~t~Rq~~Y~~~ 112 (276)
++.+||=-|-+..|+.|..--..|.++..+.....-.||+|+..-.+ .+..|.+ .+.-|-..+..+..++.
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~-~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVF-SHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHH-HHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 45677788999999999887777777766542223355655543321 3445543 22334456666677888
Q ss_pred hCCCC----C-Ccce-EEEc--CeEec-------cCCChhhHHHHHHc
Q 023845 113 LNLDT----M-FTPQ-LVFQ--GRVQC-------QGNDQDGMLSAIAN 145 (276)
Q Consensus 113 ~g~~~----v-YTPq-~vVn--G~~~~-------~g~~~~~~~~~i~~ 145 (276)
+|+.. . -.|. |||| |+... .|.+.+++.+.|++
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~ 154 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKA 154 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 88631 1 2466 7777 44432 34445666666654
No 169
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=76.48 E-value=1.7 Score=31.60 Aligned_cols=24 Identities=13% Similarity=0.310 Sum_probs=21.8
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcc
Q 023845 46 VELFSSQGCKTSPEAEILVSRLGR 69 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~~ 69 (276)
++||++..|++|-.+..+|.+..-
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi 25 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGI 25 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCC
Confidence 789999999999999999998754
No 170
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=76.25 E-value=1.7 Score=36.29 Aligned_cols=23 Identities=9% Similarity=0.404 Sum_probs=20.9
Q ss_pred EEEecCCCCCCCHHHHHHHHHhc
Q 023845 46 VELFSSQGCKTSPEAEILVSRLG 68 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~ 68 (276)
|.+|+..+|++|=.|.+||.+-.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~ 24 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQ 24 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcC
Confidence 78999999999999999999743
No 171
>PRK13190 putative peroxiredoxin; Provisional
Probab=76.22 E-value=7.5 Score=34.34 Aligned_cols=106 Identities=17% Similarity=0.121 Sum_probs=62.0
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCC--------CCCccccHHHHHHHHH
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDP--------YGSSQWTVRQKAYVEA 112 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~--------fa~~~~t~Rq~~Y~~~ 112 (276)
++.+||-.|-+-.|+.|+.--..|.++.++.....-.||+++....+ .+.-|... +.-|-..+-.+..++.
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~-~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIY-SHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHH-HHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 45677788999999999988777777665432112245555543221 11223211 2224555556677888
Q ss_pred hCCC----CCCcce-EEEc--CeEe-------ccCCChhhHHHHHHcCC
Q 023845 113 LNLD----TMFTPQ-LVFQ--GRVQ-------CQGNDQDGMLSAIANAP 147 (276)
Q Consensus 113 ~g~~----~vYTPq-~vVn--G~~~-------~~g~~~~~~~~~i~~~~ 147 (276)
+|+. ....|. ++|| |+.. .+|.+.+++.+.|++.+
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 8863 224677 6775 4332 24667777777776544
No 172
>PTZ00256 glutathione peroxidase; Provisional
Probab=75.64 E-value=4.2 Score=35.15 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=34.1
Q ss_pred cCCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeee
Q 023845 40 RGGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVD 86 (276)
Q Consensus 40 ~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVd 86 (276)
.++++||=+|....|+.|..--..|.+|.+++. ..++..|++.++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~--~~gv~vv~vs~~ 83 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYK--SQGLEILAFPCN 83 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHh--hCCcEEEEEecc
Confidence 345677767789999999988888888887663 346888888765
No 173
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=75.54 E-value=5.4 Score=34.11 Aligned_cols=39 Identities=23% Similarity=0.434 Sum_probs=27.0
Q ss_pred cHHHHHHHHHhCCCCCCcceEEEcCeEeccCCC-hhhHHHHH
Q 023845 103 TVRQKAYVEALNLDTMFTPQLVFQGRVQCQGND-QDGMLSAI 143 (276)
Q Consensus 103 t~Rq~~Y~~~~g~~~vYTPq~vVnG~~~~~g~~-~~~~~~~i 143 (276)
.+.....+...|+.+ ||.++|||+....|.. .+.+.++|
T Consensus 161 ~~~~~~~a~~~gv~G--~Pt~vv~g~~~~~G~~~~~~~~~~i 200 (201)
T cd03024 161 VRADEARARQLGISG--VPFFVFNGKYAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHHHHHCCCCc--CCEEEECCeEeecCCCCHHHHHHHh
Confidence 344455677788887 9999999987666654 45555544
No 174
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=75.35 E-value=5 Score=33.87 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=21.0
Q ss_pred HHHHHHHHHhCCCCCCcceEEEcCeEeccCCC
Q 023845 104 VRQKAYVEALNLDTMFTPQLVFQGRVQCQGND 135 (276)
Q Consensus 104 ~Rq~~Y~~~~g~~~vYTPq~vVnG~~~~~g~~ 135 (276)
......++++|+.+ ||.++|||+. +.|.+
T Consensus 154 ~~~~~~a~~~gi~g--vPtfvv~g~~-~~G~~ 182 (192)
T cd03022 154 RANTEEAIARGVFG--VPTFVVDGEM-FWGQD 182 (192)
T ss_pred HHHHHHHHHcCCCc--CCeEEECCee-ecccc
Confidence 33345567788888 9999999974 45654
No 175
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=74.83 E-value=7.6 Score=39.26 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=42.4
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceE
Q 023845 44 VLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQL 123 (276)
Q Consensus 44 vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~ 123 (276)
++|=.|...+|++|-.-...+.++++++. ..++....+.+| .+.......++++.+ .|++
T Consensus 373 ~VLV~FyApWC~~Ck~m~P~~eelA~~~~--~~~v~~~kVdvD----------------~~~~~~~~~~~~I~~--~PTi 432 (463)
T TIGR00424 373 AWLVVLYAPWCPFCQAMEASYLELAEKLA--GSGVKVAKFRAD----------------GDQKEFAKQELQLGS--FPTI 432 (463)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHHHHhc--cCCcEEEEEECC----------------CCccHHHHHHcCCCc--cceE
Confidence 45556778999999999999999988752 234656666665 221122235789888 6664
Q ss_pred --EEcCe
Q 023845 124 --VFQGR 128 (276)
Q Consensus 124 --vVnG~ 128 (276)
+-||.
T Consensus 433 i~Fk~g~ 439 (463)
T TIGR00424 433 LFFPKHS 439 (463)
T ss_pred EEEECCC
Confidence 44564
No 176
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=74.78 E-value=8.2 Score=38.44 Aligned_cols=80 Identities=19% Similarity=0.192 Sum_probs=55.7
Q ss_pred cCCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCC
Q 023845 40 RGGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMF 119 (276)
Q Consensus 40 ~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vY 119 (276)
-++.--.|-|-|..|-+||.--..|.-..-- .|++-=.+++-. --+.-.+..+++.
T Consensus 114 i~g~~~FETy~SltC~nCPDVVQALN~msvl----Np~I~H~~IdGa------------------~Fq~Evear~IMa-- 169 (520)
T COG3634 114 IDGDFHFETYFSLTCHNCPDVVQALNLMSVL----NPRIKHTAIDGA------------------LFQDEVEARNIMA-- 169 (520)
T ss_pred cCCceeEEEEEEeeccCChHHHHHHHHHHhc----CCCceeEEecch------------------hhHhHHHhcccee--
Confidence 3456788999999999999988888766542 567655555432 1133356678888
Q ss_pred cceEEEcCeEeccCCChhhHHHHHHc
Q 023845 120 TPQLVFQGRVQCQGNDQDGMLSAIAN 145 (276)
Q Consensus 120 TPq~vVnG~~~~~g~~~~~~~~~i~~ 145 (276)
+|++++||++.-.| +..++..+.+
T Consensus 170 VPtvflnGe~fg~G--Rmtleeilak 193 (520)
T COG3634 170 VPTVFLNGEEFGQG--RMTLEEILAK 193 (520)
T ss_pred cceEEEcchhhccc--ceeHHHHHHH
Confidence 99999999876554 4556555544
No 177
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=73.90 E-value=9.1 Score=29.01 Aligned_cols=27 Identities=15% Similarity=0.315 Sum_probs=22.5
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHHhcc
Q 023845 43 AVLVELFSSQGCKTSPEAEILVSRLGR 69 (276)
Q Consensus 43 ~vvVElFTSqGCssCP~Ad~~l~~l~~ 69 (276)
+--+.||+...|+.|=.+..+|.+..-
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl 42 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLAAKNI 42 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHcCC
Confidence 345799999999999999888887654
No 178
>PTZ00102 disulphide isomerase; Provisional
Probab=73.28 E-value=10 Score=36.87 Aligned_cols=89 Identities=16% Similarity=0.231 Sum_probs=51.7
Q ss_pred hcCCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCC
Q 023845 39 RRGGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTM 118 (276)
Q Consensus 39 ~~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~v 118 (276)
...+.+||+ |.+.+|++|-.....+.++++......++|....+..+ ..+...+++++.+
T Consensus 47 ~~~~~~lv~-f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~------------------~~~~l~~~~~i~~- 106 (477)
T PTZ00102 47 TENEIVLVK-FYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDAT------------------EEMELAQEFGVRG- 106 (477)
T ss_pred hcCCcEEEE-EECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECC------------------CCHHHHHhcCCCc-
Confidence 334455555 66789999987777666665432111235555444332 1245677889887
Q ss_pred CcceEE-E-cCeEe-c-cCCChhhHHHHHHcCCC
Q 023845 119 FTPQLV-F-QGRVQ-C-QGNDQDGMLSAIANAPK 148 (276)
Q Consensus 119 YTPq~v-V-nG~~~-~-~g~~~~~~~~~i~~~~~ 148 (276)
.|+++ + ||... . +..+.+.+...|.+...
T Consensus 107 -~Pt~~~~~~g~~~~y~g~~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 107 -YPTIKFFNKGNPVNYSGGRTADGIVSWIKKLTG 139 (477)
T ss_pred -ccEEEEEECCceEEecCCCCHHHHHHHHHHhhC
Confidence 88753 3 34321 2 33457778887877654
No 179
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=70.90 E-value=20 Score=28.16 Aligned_cols=60 Identities=15% Similarity=0.193 Sum_probs=37.0
Q ss_pred CCceEEEEecCCCCCCCHHHHHH------HHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhC
Q 023845 41 GGAVLVELFSSQGCKTSPEAEIL------VSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALN 114 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~------l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g 114 (276)
+++ |+=.|++.+|+.|-.-++- +.++-+ .+.|.+.+.++ +.-...+++.++
T Consensus 17 ~K~-llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~------~~~v~~~~d~~----------------~~e~~~~~~~~~ 73 (114)
T cd02958 17 KKW-LLVYLQSEDEFDSQVLNRDLWSNESVKEFIR------ENFIFWQCDID----------------SSEGQRFLQSYK 73 (114)
T ss_pred Cce-EEEEEecCCcchHHHHHHHHcCCHHHHHHHH------hCEEEEEecCC----------------CccHHHHHHHhC
Confidence 444 4456778999999765431 222222 36777776654 122456888888
Q ss_pred CCCCCcceEEE
Q 023845 115 LDTMFTPQLVF 125 (276)
Q Consensus 115 ~~~vYTPq~vV 125 (276)
... +|.+++
T Consensus 74 ~~~--~P~~~~ 82 (114)
T cd02958 74 VDK--YPHIAI 82 (114)
T ss_pred ccC--CCeEEE
Confidence 776 999544
No 180
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=69.84 E-value=16 Score=32.18 Aligned_cols=89 Identities=12% Similarity=0.225 Sum_probs=54.1
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHH-HhCCCCCCcc
Q 023845 43 AVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVE-ALNLDTMFTP 121 (276)
Q Consensus 43 ~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~-~~g~~~vYTP 121 (276)
-+||=.|+...|+.|+ .-..|.+|.+++. ..++..|+|..+- .|.++ +.-.+-.++|.+ .+|..- |
T Consensus 26 KvvLVvf~AS~C~~~~-q~~~L~~L~~~y~--~~gl~Vlg~p~nq---f~~qe----~~~~~ei~~f~~~~~g~~F---p 92 (183)
T PRK10606 26 NVLLIVNVASKCGLTP-QYEQLENIQKAWA--DQGFVVLGFPCNQ---FLGQE----PGSDEEIKTYCRTTWGVTF---P 92 (183)
T ss_pred CEEEEEEEeCCCCCcH-HHHHHHHHHHHHh--hCCeEEEEeeccc---cccCC----CCCHHHHHHHHHHccCCCc---e
Confidence 3566667888899996 4667888888764 4579999998863 12221 122344566776 566432 3
Q ss_pred eEEEcCeEeccCCChhhHHHHHHcCC
Q 023845 122 QLVFQGRVQCQGNDQDGMLSAIANAP 147 (276)
Q Consensus 122 q~vVnG~~~~~g~~~~~~~~~i~~~~ 147 (276)
+=....+.|.+..-+...+.+..
T Consensus 93 ---v~~k~dvnG~~~~pl~~~Lk~~~ 115 (183)
T PRK10606 93 ---MFSKIEVNGEGRHPLYQKLIAAA 115 (183)
T ss_pred ---eEEEEccCCCCCCHHHHHHHHhC
Confidence 22333444445566777777544
No 181
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=68.93 E-value=27 Score=24.93 Aligned_cols=25 Identities=8% Similarity=0.181 Sum_probs=20.3
Q ss_pred EEEEecCCCCCCCHHHHHHHHHhcc
Q 023845 45 LVELFSSQGCKTSPEAEILVSRLGR 69 (276)
Q Consensus 45 vVElFTSqGCssCP~Ad~~l~~l~~ 69 (276)
+++||+...|++|=.+--+|.++.-
T Consensus 1 ~~~Ly~~~~s~~s~~v~~~l~~~~i 25 (76)
T cd03053 1 VLKLYGAAMSTCVRRVLLCLEEKGV 25 (76)
T ss_pred CeEEEeCCCChhHHHHHHHHHHcCC
Confidence 4689999999999888888877654
No 182
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=68.07 E-value=3.7 Score=33.39 Aligned_cols=23 Identities=17% Similarity=0.557 Sum_probs=20.5
Q ss_pred EEEecCCCCCCCHHHHHHHHHhc
Q 023845 46 VELFSSQGCKTSPEAEILVSRLG 68 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~ 68 (276)
|-+|+...|++|=.|.+||.+-.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~g 24 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAG 24 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC
Confidence 56999999999999999999743
No 183
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=67.71 E-value=2.9 Score=33.41 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.3
Q ss_pred EEEecCCCCCCCHHHHHHHHHhc
Q 023845 46 VELFSSQGCKTSPEAEILVSRLG 68 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~ 68 (276)
|-+|+..+|++|=.|.+||.+-.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~ 23 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARG 23 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcC
Confidence 46899999999999999999743
No 184
>PLN02309 5'-adenylylsulfate reductase
Probab=67.30 E-value=13 Score=37.59 Aligned_cols=61 Identities=20% Similarity=0.277 Sum_probs=41.7
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHH-HhCCCCCCcce
Q 023845 44 VLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVE-ALNLDTMFTPQ 122 (276)
Q Consensus 44 vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~-~~g~~~vYTPq 122 (276)
.+|=+|.+.+|++|-.-...+.+|++++. ..+|....+.+| ..++.+.. .+++.+ .|+
T Consensus 367 ~vlV~FyApWC~~Cq~m~p~~e~LA~~~~--~~~V~f~kVD~d-----------------~~~~~la~~~~~I~~--~PT 425 (457)
T PLN02309 367 PWLVVLYAPWCPFCQAMEASYEELAEKLA--GSGVKVAKFRAD-----------------GDQKEFAKQELQLGS--FPT 425 (457)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHHHHhc--cCCeEEEEEECC-----------------CcchHHHHhhCCCce--eeE
Confidence 45556888999999998989999988652 235665555443 13445564 589988 777
Q ss_pred EEE
Q 023845 123 LVF 125 (276)
Q Consensus 123 ~vV 125 (276)
+++
T Consensus 426 il~ 428 (457)
T PLN02309 426 ILL 428 (457)
T ss_pred EEE
Confidence 544
No 185
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=67.17 E-value=36 Score=28.02 Aligned_cols=92 Identities=20% Similarity=0.188 Sum_probs=46.2
Q ss_pred hhhcCCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCC
Q 023845 37 EMRRGGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLD 116 (276)
Q Consensus 37 ~~~~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~ 116 (276)
.....+.+|||.|.+= |.|..+ ....+|+.++..+.+.|+ |+ .||= +| +. ....+.++.++|++
T Consensus 14 ~v~~~~~vlV~F~A~~--Pwc~k~-~~~~~LA~e~~~aa~~v~-la-kVd~------~d-~~----~~~~~~L~~~y~I~ 77 (116)
T cd03007 14 VIPKFKYSLVKFDTAY--PYGEKH-EAFTRLAESSASATDDLL-VA-EVGI------KD-YG----EKLNMELGERYKLD 77 (116)
T ss_pred HHhcCCcEEEEEeCCC--CCCCCh-HHHHHHHHHHHhhcCceE-EE-EEec------cc-cc----chhhHHHHHHhCCC
Confidence 3455677889888754 455432 333344433222233443 33 4551 11 11 12446789999998
Q ss_pred --CCCcceEEEcCe----EeccC--CChhhHHHHHH
Q 023845 117 --TMFTPQLVFQGR----VQCQG--NDQDGMLSAIA 144 (276)
Q Consensus 117 --~vYTPq~vVnG~----~~~~g--~~~~~~~~~i~ 144 (276)
..-|=-++.||. ....| ++.+.+...|+
T Consensus 78 ~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~ 113 (116)
T cd03007 78 KESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLK 113 (116)
T ss_pred cCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHH
Confidence 633333667784 22333 34455555554
No 186
>smart00594 UAS UAS domain.
Probab=67.10 E-value=29 Score=27.91 Aligned_cols=62 Identities=21% Similarity=0.168 Sum_probs=38.1
Q ss_pred hcCCceEEEEecCCCCCCCHHHHHH------HHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHH
Q 023845 39 RRGGAVLVELFSSQGCKTSPEAEIL------VSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEA 112 (276)
Q Consensus 39 ~~~~~vvVElFTSqGCssCP~Ad~~------l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~ 112 (276)
..+++++| .|.++.|+.|-.-++- +.++. ..+.|.+...|+ +...+.++..
T Consensus 25 ~~~K~~lv-~~~~~~c~~c~~~~r~vl~~~~V~~~i------~~~fv~~~~dv~----------------~~eg~~l~~~ 81 (122)
T smart00594 25 RQRRLLWL-YLHSQDSPDSQVFNRDVLCNEAVKSLI------RENFIFWQVDVD----------------TSEGQRVSQF 81 (122)
T ss_pred hhcCCEEE-EEeCCCCchHHHHHHHHccCHHHHHHH------HcCEEEEEecCC----------------ChhHHHHHHh
Confidence 33444554 5666789999765553 12222 236777777665 2334678899
Q ss_pred hCCCCCCcceEEE
Q 023845 113 LNLDTMFTPQLVF 125 (276)
Q Consensus 113 ~g~~~vYTPq~vV 125 (276)
++..+ .|.++|
T Consensus 82 ~~~~~--~P~~~~ 92 (122)
T smart00594 82 YKLDS--FPYVAI 92 (122)
T ss_pred cCcCC--CCEEEE
Confidence 99887 888544
No 187
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=67.03 E-value=9.9 Score=33.62 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=47.0
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHH---HhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCC
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVS---RLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDT 117 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~---~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~ 117 (276)
...-++=.|-|.+|+.|-.-.+-+- +|++ + .-++..+..+...|-+-.=.+| ...+-+.--+..++.++.++
T Consensus 41 ~~Kylllmfes~~C~yC~~~KKd~~~~krlrE-y--lk~hf~~~~l~i~~skpv~f~~--g~kee~~s~~ELa~kf~vrs 115 (182)
T COG2143 41 NDKYLLLMFESNGCSYCERFKKDLKNVKRLRE-Y--LKEHFSAYYLNISYSKPVLFKV--GDKEEKMSTEELAQKFAVRS 115 (182)
T ss_pred cCcEEEEEEcCCCChHHHHHHHhhcchHHHHH-H--HhhCeEEEEEEeccCcceEeec--CceeeeecHHHHHHHhcccc
Confidence 3457888999999999987666542 2221 1 1245666555555422111110 11233444467899999999
Q ss_pred CCcceEEEc
Q 023845 118 MFTPQLVFQ 126 (276)
Q Consensus 118 vYTPq~vVn 126 (276)
||.+|+=
T Consensus 116 --tPtfvFf 122 (182)
T COG2143 116 --TPTFVFF 122 (182)
T ss_pred --CceEEEE
Confidence 9998763
No 188
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=66.77 E-value=25 Score=35.92 Aligned_cols=94 Identities=21% Similarity=0.279 Sum_probs=61.6
Q ss_pred cccchhhhhcCCceEEEEecCCCCCCC----HHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHH
Q 023845 31 ADVSAEEMRRGGAVLVELFSSQGCKTS----PEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQ 106 (276)
Q Consensus 31 ~~~~~~~~~~~~~vvVElFTSqGCssC----P~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq 106 (276)
-+...........++||.|+ .+|.|| |.-.+.-..|.+. ...|.|+- || -.+.
T Consensus 32 ~dnf~~~i~~~~~vlVeFYA-PWCghck~LaPey~kAA~~Lke~-----~s~i~Lak-VD----------------at~~ 88 (493)
T KOG0190|consen 32 KDNFKETINGHEFVLVEFYA-PWCGHCKALAPEYEKAATELKEE-----GSPVKLAK-VD----------------ATEE 88 (493)
T ss_pred cccHHHHhccCceEEEEEEc-hhhhhhhhhCcHHHHHHHHhhcc-----CCCceeEE-ee----------------cchh
Confidence 34444455566678899887 799999 5555555555552 23455543 55 2233
Q ss_pred HHHHHHhCCCCCCcceEEEcCeE--e-ccCCChhhHHHHHHcCC
Q 023845 107 KAYVEALNLDTMFTPQLVFQGRV--Q-CQGNDQDGMLSAIANAP 147 (276)
Q Consensus 107 ~~Y~~~~g~~~vYTPq~vVnG~~--~-~~g~~~~~~~~~i~~~~ 147 (276)
..++.+++++..-|=-+..||+. . -++++.+++-..+++..
T Consensus 89 ~~~~~~y~v~gyPTlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~ 132 (493)
T KOG0190|consen 89 SDLASKYEVRGYPTLKIFRNGRSAQDYNGPREADGIVKWLKKQS 132 (493)
T ss_pred hhhHhhhcCCCCCeEEEEecCCcceeccCcccHHHHHHHHHhcc
Confidence 88999999999666678899985 2 24445666777777654
No 189
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=65.12 E-value=14 Score=30.67 Aligned_cols=63 Identities=14% Similarity=0.152 Sum_probs=40.6
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHH-hCCC
Q 023845 44 VLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEA-LNLD 116 (276)
Q Consensus 44 vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~-~g~~ 116 (276)
+||=.|....|+ |...-..|.+|.+++. ..++..+++.++.. +..+ +.-.+..++|.+. .+..
T Consensus 24 ~vvl~fwatwC~-C~~e~p~l~~l~~~~~--~~~~~vv~v~~~~~---~~~~----~~~~~~~~~f~~~~~~~~ 87 (152)
T cd00340 24 VLLIVNVASKCG-FTPQYEGLEALYEKYK--DRGLVVLGFPCNQF---GGQE----PGSNEEIKEFCETNYGVT 87 (152)
T ss_pred EEEEEEEcCCCC-chHHHHHHHHHHHHhc--CCCEEEEEeccCcc---ccCC----CCCHHHHHHHHHHhcCCC
Confidence 444455699999 9999899999988763 34688888876531 1111 1122456788876 6754
No 190
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.30 E-value=17 Score=29.51 Aligned_cols=79 Identities=14% Similarity=0.290 Sum_probs=57.6
Q ss_pred eEEEEecCC-CCCCC---HHH---HHHHHHhccc-CCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCC
Q 023845 44 VLVELFSSQ-GCKTS---PEA---EILVSRLGRG-DFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNL 115 (276)
Q Consensus 44 vvVElFTSq-GCssC---P~A---d~~l~~l~~~-~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~ 115 (276)
+-+-+|-++ =|-|| |.+ .+||..+.++ ++ .. .|.+.|-|. -+|..++--.+|+.+.-.
T Consensus 5 ~~l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp--~~-----~F~~~YiDI-------~n~~~e~~~~~~aekI~~ 70 (106)
T COG4837 5 AKLVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYP--NQ-----PFKYTYIDI-------TNPPLEDHDLQFAEKIEQ 70 (106)
T ss_pred eEEEEecchhhhHHhcCCCcchhHHHHHHHHHhccCC--CC-----CcEEEEEEc-------CCCccHHHHHHHHHHHhc
Confidence 445566665 48888 555 4688776554 32 22 388888774 377778888899999988
Q ss_pred CCCCcceEEEcCeEeccCCCh
Q 023845 116 DTMFTPQLVFQGRVQCQGNDQ 136 (276)
Q Consensus 116 ~~vYTPq~vVnG~~~~~g~~~ 136 (276)
...+-|-++|+++...-|..+
T Consensus 71 dey~YPlivvedeiVaeGnpr 91 (106)
T COG4837 71 DEYFYPLIVVEDEIVAEGNPR 91 (106)
T ss_pred ccccceEEEEcceEeecCCch
Confidence 888999999999887777653
No 191
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=63.71 E-value=25 Score=24.66 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=20.9
Q ss_pred EEEecCCCCCCCHHHHHHHHHhccc
Q 023845 46 VELFSSQGCKTSPEAEILVSRLGRG 70 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~~~ 70 (276)
+.||+...|++|=.+..+|.+..-.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~ 25 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIP 25 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCC
Confidence 3699999999999998888876553
No 192
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=63.20 E-value=28 Score=24.48 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=19.9
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcc
Q 023845 46 VELFSSQGCKTSPEAEILVSRLGR 69 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~~ 69 (276)
+.||+...|+.|=.+...|++..-
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi 24 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGV 24 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCC
Confidence 368999999999999888887654
No 193
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=61.73 E-value=16 Score=33.97 Aligned_cols=70 Identities=13% Similarity=0.118 Sum_probs=42.3
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcc
Q 023845 42 GAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTP 121 (276)
Q Consensus 42 ~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTP 121 (276)
.--|+= |-...|+.|-.....|..+++++ +=.|+++++.-.- =. .|-.+. .+.+. +.++|+. +||
T Consensus 144 ~~GL~f-Fy~s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG~~-----~p-~fp~~~-~d~gq--a~~l~v~--~~P 208 (248)
T PRK13703 144 HYGLMF-FYRGQDPIDGQLAQVINDFRDTY---GLSVIPVSVDGVI-----NP-LLPDSR-TDQGQ--AQRLGVK--YFP 208 (248)
T ss_pred cceEEE-EECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCC-----CC-CCCCCc-cChhH--HHhcCCc--ccc
Confidence 345554 44567999999999999999988 3367777664321 00 122211 12222 3577875 489
Q ss_pred e-EEEc
Q 023845 122 Q-LVFQ 126 (276)
Q Consensus 122 q-~vVn 126 (276)
. ++||
T Consensus 209 Al~Lv~ 214 (248)
T PRK13703 209 ALMLVD 214 (248)
T ss_pred eEEEEE
Confidence 8 5555
No 194
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=61.24 E-value=22 Score=25.39 Aligned_cols=56 Identities=23% Similarity=0.297 Sum_probs=36.8
Q ss_pred EecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceEEEc-
Q 023845 48 LFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQLVFQ- 126 (276)
Q Consensus 48 lFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~vVn- 126 (276)
||+...|+.|=.+..+|.+..-.+ ..+ .|+.++ +...|.+...... +|.++.+
T Consensus 3 ly~~~~~p~~~rv~~~L~~~gl~~-----e~~----~v~~~~---------------~~~~~~~~np~~~--vP~L~~~~ 56 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLAGITV-----ELR----EVELKN---------------KPAEMLAASPKGT--VPVLVLGN 56 (71)
T ss_pred EEecCCCcHHHHHHHHHHHcCCCc-----EEE----EeCCCC---------------CCHHHHHHCCCCC--CCEEEECC
Confidence 799999999999999998765432 221 333321 1135655555555 9999996
Q ss_pred CeE
Q 023845 127 GRV 129 (276)
Q Consensus 127 G~~ 129 (276)
|..
T Consensus 57 g~~ 59 (71)
T cd03060 57 GTV 59 (71)
T ss_pred CcE
Confidence 654
No 195
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=60.05 E-value=7.6 Score=30.31 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=20.0
Q ss_pred EEecCCCCCCCHHHHHHHHHhcc
Q 023845 47 ELFSSQGCKTSPEAEILVSRLGR 69 (276)
Q Consensus 47 ElFTSqGCssCP~Ad~~l~~l~~ 69 (276)
-||-|.=||-|-||.+.|+++.-
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v 27 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNV 27 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCC
Confidence 48999999999999999998543
No 196
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.29 E-value=23 Score=29.93 Aligned_cols=47 Identities=23% Similarity=0.325 Sum_probs=34.2
Q ss_pred EEEEecCCC--------CCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCC
Q 023845 45 LVELFSSQG--------CKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDP 96 (276)
Q Consensus 45 vVElFTSqG--------CssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~ 96 (276)
+.-+|++.- ||-|-.|+.++.+.-+.. ..++..+-..|+ |+-=||||
T Consensus 28 ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~a---p~~~~~v~v~VG--~rp~Wk~p 82 (128)
T KOG3425|consen 28 IFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHA---PEDVHFVHVYVG--NRPYWKDP 82 (128)
T ss_pred EEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhC---CCceEEEEEEec--CCCcccCC
Confidence 667887765 999999999999877633 346666544444 67778876
No 197
>PTZ00102 disulphide isomerase; Provisional
Probab=58.71 E-value=20 Score=34.96 Aligned_cols=88 Identities=17% Similarity=0.263 Sum_probs=52.7
Q ss_pred cCCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCC
Q 023845 40 RGGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMF 119 (276)
Q Consensus 40 ~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vY 119 (276)
.++++||. |.+.+|++|-.....+.++++.... .+.|+...+.++--+ .-...++++.
T Consensus 374 ~~k~vlv~-f~a~wC~~C~~~~p~~~~~a~~~~~-~~~v~~~~id~~~~~------------------~~~~~~~v~~-- 431 (477)
T PTZ00102 374 SDKDVLLE-IYAPWCGHCKNLEPVYNELGEKYKD-NDSIIVAKMNGTANE------------------TPLEEFSWSA-- 431 (477)
T ss_pred CCCCEEEE-EECCCCHHHHHHHHHHHHHHHHhcc-CCcEEEEEEECCCCc------------------cchhcCCCcc--
Confidence 34556665 5579999999999999999875421 234655555554211 1144566665
Q ss_pred cceEEE--cCeEe---ccC-CChhhHHHHHHcCCCC
Q 023845 120 TPQLVF--QGRVQ---CQG-NDQDGMLSAIANAPKF 149 (276)
Q Consensus 120 TPq~vV--nG~~~---~~g-~~~~~~~~~i~~~~~~ 149 (276)
+|++++ +|... ..| .+.+.+...|.+....
T Consensus 432 ~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 432 FPTILFVKAGERTPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred cCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCCC
Confidence 888543 34321 234 4567777777776543
No 198
>PF04694 Corona_3: Coronavirus ORF3 protein; InterPro: IPR006784 This family represents the Coronavirus ORF3 protein, also known as the X2A protein.
Probab=57.22 E-value=4.6 Score=29.27 Aligned_cols=12 Identities=42% Similarity=0.938 Sum_probs=9.5
Q ss_pred ccceeeccCCCC
Q 023845 3 RRLLACFGKGGS 14 (276)
Q Consensus 3 ~~~~~~~~~~~~ 14 (276)
-+||.|||||-.
T Consensus 34 gkllVcigFGDT 45 (60)
T PF04694_consen 34 GKLLVCIGFGDT 45 (60)
T ss_pred CcEEEEEecchH
Confidence 368999999853
No 199
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=56.23 E-value=6.5 Score=31.60 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=20.1
Q ss_pred EEEecCCCCCCCHHHHHHHHHhc
Q 023845 46 VELFSSQGCKTSPEAEILVSRLG 68 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~ 68 (276)
|-+|...+|++|=.|-+||.+-.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~ 23 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAG 23 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCC
Confidence 35899999999999999999753
No 200
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=55.33 E-value=13 Score=37.89 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=36.0
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeee
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVD 86 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVd 86 (276)
.+.||||.|| .+|.||=.-...+.+|++.+.. .++|+..-+.++
T Consensus 384 ~KdVLvEfyA-PWCgHCk~laP~~eeLAe~~~~-~~~vviAKmDaT 427 (493)
T KOG0190|consen 384 GKDVLVEFYA-PWCGHCKALAPIYEELAEKYKD-DENVVIAKMDAT 427 (493)
T ss_pred ccceEEEEcC-cccchhhhhhhHHHHHHHHhcC-CCCcEEEEeccc
Confidence 4569999887 7999998888888888876643 678998888887
No 201
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=55.07 E-value=9.6 Score=31.58 Aligned_cols=66 Identities=26% Similarity=0.377 Sum_probs=37.5
Q ss_pred eEEEEecCC-------CCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHH--HhC
Q 023845 44 VLVELFSSQ-------GCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVE--ALN 114 (276)
Q Consensus 44 vvVElFTSq-------GCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~--~~g 114 (276)
.+.=+|+|. .||-|-.|+..+.+.-+.. ..+..-+-.+|+ |+--|||| . ..|.. .++
T Consensus 21 ~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~---~~~~~lv~v~VG--~r~~Wkdp-~--------n~fR~~p~~~ 86 (119)
T PF06110_consen 21 PLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKA---PENARLVYVEVG--DRPEWKDP-N--------NPFRTDPDLK 86 (119)
T ss_dssp EEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH----STTEEEEEEE-----HHHHC-T-T--------SHHHH--CC-
T ss_pred eEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhC---CCCceEEEEEcC--CHHHhCCC-C--------CCceEcceee
Confidence 455577754 6999999998888876542 346777777775 55567875 2 22333 366
Q ss_pred CCCCCcceEEE
Q 023845 115 LDTMFTPQLVF 125 (276)
Q Consensus 115 ~~~vYTPq~vV 125 (276)
+.. .|+++-
T Consensus 87 l~~--IPTLi~ 95 (119)
T PF06110_consen 87 LKG--IPTLIR 95 (119)
T ss_dssp --S--SSEEEE
T ss_pred eee--cceEEE
Confidence 666 888764
No 202
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=54.54 E-value=4.6 Score=33.56 Aligned_cols=78 Identities=8% Similarity=0.088 Sum_probs=43.9
Q ss_pred hhhcCCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCC
Q 023845 37 EMRRGGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLD 116 (276)
Q Consensus 37 ~~~~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~ 116 (276)
-....+..-+-+||...|+-|-..-..|.++++. .|+ +++.| +..-++.+.-..|.. .|.+
T Consensus 36 l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~----~p~-----i~~~~---------i~rd~~~el~~~~lt-~g~~ 96 (129)
T PF14595_consen 36 LKSIQKPYNILVITETWCGDCARNVPVLAKIAEA----NPN-----IEVRI---------ILRDENKELMDQYLT-NGGR 96 (129)
T ss_dssp HHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-----TT-----EEEEE---------E-HHHHHHHTTTTTT--SS-
T ss_pred HHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHh----CCC-----CeEEE---------EEecCChhHHHHHHh-CCCe
Confidence 3445567889999999999999999999999885 344 55655 233344555555555 4555
Q ss_pred CCCcceEEEc---CeEeccCCC
Q 023845 117 TMFTPQLVFQ---GRVQCQGND 135 (276)
Q Consensus 117 ~vYTPq~vVn---G~~~~~g~~ 135 (276)
+ +|.+||= |.+...|..
T Consensus 97 ~--IP~~I~~d~~~~~lg~wge 116 (129)
T PF14595_consen 97 S--IPTFIFLDKDGKELGRWGE 116 (129)
T ss_dssp ---SSEEEEE-TT--EEEEEES
T ss_pred e--cCEEEEEcCCCCEeEEEcC
Confidence 5 9997774 455544433
No 203
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=53.41 E-value=4.8 Score=29.31 Aligned_cols=13 Identities=31% Similarity=0.575 Sum_probs=10.9
Q ss_pred EEecCCCCCCCHH
Q 023845 47 ELFSSQGCKTSPE 59 (276)
Q Consensus 47 ElFTSqGCssCP~ 59 (276)
|-||||-||.|=.
T Consensus 24 ~~~TSq~C~~CG~ 36 (69)
T PF07282_consen 24 EAYTSQTCPRCGH 36 (69)
T ss_pred CCCCccCccCccc
Confidence 5689999999953
No 204
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=52.07 E-value=22 Score=31.57 Aligned_cols=48 Identities=10% Similarity=0.043 Sum_probs=30.3
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHHhcccCC--CCCCCEEEEEEeeeccc
Q 023845 42 GAVLVELFSSQGCKTSPEAEILVSRLGRGDF--ELGVPVIVLAYHVDYWD 89 (276)
Q Consensus 42 ~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~--~~~~~VIaLa~hVdYWD 89 (276)
+.|.|=-|---.|+.|-....+|.+|+++.. +.....+++.+.-+-|+
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~ 108 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVG 108 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhh
Confidence 3455555666799999999999999976421 00112266666554443
No 205
>PRK07758 hypothetical protein; Provisional
Probab=51.61 E-value=5.8 Score=31.92 Aligned_cols=17 Identities=35% Similarity=0.618 Sum_probs=14.4
Q ss_pred EEecCCCCCCCHHHHHH
Q 023845 47 ELFSSQGCKTSPEAEIL 63 (276)
Q Consensus 47 ElFTSqGCssCP~Ad~~ 63 (276)
|.|-|..||+||.-|+-
T Consensus 15 ~~~~~~~~~~~~~~~~~ 31 (95)
T PRK07758 15 EYYKSSDCPTCPTCEKE 31 (95)
T ss_pred ceeccCCCCCCcccccc
Confidence 78999999999976653
No 206
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=50.48 E-value=49 Score=24.08 Aligned_cols=61 Identities=11% Similarity=0.094 Sum_probs=36.3
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceEEE
Q 023845 46 VELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQLVF 125 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~vV 125 (276)
+.||.+.+|++|=...-.|.++.-.+ .++. ++.+. . ..+...|.+...... +|.++.
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~-----e~~~----v~~~~----------~--~~~~~~~~~inP~g~--vP~L~~ 57 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRC-----EEYD----VSLPL----------S--EHNEPWFMRLNPTGE--VPVLIH 57 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCC-----EEEE----ecCCc----------C--ccCCHHHHHhCcCCC--CCEEEE
Confidence 35899999999977777777765432 2221 22111 0 111234666555555 899988
Q ss_pred cCeE
Q 023845 126 QGRV 129 (276)
Q Consensus 126 nG~~ 129 (276)
||..
T Consensus 58 ~g~~ 61 (73)
T cd03052 58 GDNI 61 (73)
T ss_pred CCEE
Confidence 8764
No 207
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=50.12 E-value=51 Score=30.82 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=43.3
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcc
Q 023845 42 GAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTP 121 (276)
Q Consensus 42 ~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTP 121 (276)
+--||= |-+..|+.|=.....|..+++++ +=.|+++++.-. |-. -|-.+.- +.+ -+.++|+.. ||
T Consensus 151 ~~gL~f-Fy~~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG~-----~~p-~fp~~~~-d~g--qa~~l~v~~--~P 215 (256)
T TIGR02739 151 SYGLFF-FYRGKSPISQKMAPVIQAFAKEY---GISVIPISVDGT-----LIP-GLPNSRS-DSG--QAQHLGVKY--FP 215 (256)
T ss_pred ceeEEE-EECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCC-----CCC-CCCCccC-ChH--HHHhcCCcc--Cc
Confidence 345554 55577999999999999999988 335666665432 111 1222222 222 267788754 99
Q ss_pred e-EEEc
Q 023845 122 Q-LVFQ 126 (276)
Q Consensus 122 q-~vVn 126 (276)
. ++||
T Consensus 216 al~Lv~ 221 (256)
T TIGR02739 216 ALYLVN 221 (256)
T ss_pred eEEEEE
Confidence 9 5555
No 208
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=47.15 E-value=60 Score=27.62 Aligned_cols=45 Identities=9% Similarity=-0.006 Sum_probs=29.4
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHHhcccCCC-----CCCCEEEEEEeee
Q 023845 42 GAVLVELFSSQGCKTSPEAEILVSRLGRGDFE-----LGVPVIVLAYHVD 86 (276)
Q Consensus 42 ~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~-----~~~~VIaLa~hVd 86 (276)
..+++=.|.+..|+.|=.--..|.++.++..+ ..+++..|++.+|
T Consensus 25 gk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D 74 (146)
T cd03008 25 NRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMD 74 (146)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECC
Confidence 34677788899999997777777765432110 1235777777655
No 209
>PRK10853 putative reductase; Provisional
Probab=46.83 E-value=14 Score=30.22 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.9
Q ss_pred EEEecCCCCCCCHHHHHHHHHh
Q 023845 46 VELFSSQGCKTSPEAEILVSRL 67 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l 67 (276)
|-+|+..+|++|=.|-+||.+-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~ 23 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ 23 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc
Confidence 5689999999999999999973
No 210
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=46.83 E-value=24 Score=32.54 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=31.0
Q ss_pred HHHhCCCCCCcceEEEcCeEeccCCC-hhhHHHHHHcCCCCC
Q 023845 110 VEALNLDTMFTPQLVFQGRVQCQGND-QDGMLSAIANAPKFP 150 (276)
Q Consensus 110 ~~~~g~~~vYTPq~vVnG~~~~~g~~-~~~~~~~i~~~~~~~ 150 (276)
+++.|++. +|.||++|+..+.|.- ++-+..+|++.....
T Consensus 177 A~e~gI~g--VP~fv~d~~~~V~Gaq~~~v~~~al~~~~~~~ 216 (225)
T COG2761 177 AQEMGIRG--VPTFVFDGKYAVSGAQPYDVLEDALRQLLAEK 216 (225)
T ss_pred HHHCCCcc--CceEEEcCcEeecCCCCHHHHHHHHHHHHhcc
Confidence 56678888 9999998888888875 666888888776543
No 211
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=46.77 E-value=81 Score=22.22 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=19.8
Q ss_pred EEecCCCCCCCHHHHHHHHHhcc
Q 023845 47 ELFSSQGCKTSPEAEILVSRLGR 69 (276)
Q Consensus 47 ElFTSqGCssCP~Ad~~l~~l~~ 69 (276)
.||+...|++|=.+.-+|....-
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl 24 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNI 24 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCC
Confidence 48999999999999999987644
No 212
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=44.43 E-value=28 Score=27.46 Aligned_cols=31 Identities=16% Similarity=0.050 Sum_probs=27.8
Q ss_pred hcCCceEEEEecCCCCCCCHHHHHHHHHhccc
Q 023845 39 RRGGAVLVELFSSQGCKTSPEAEILVSRLGRG 70 (276)
Q Consensus 39 ~~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~ 70 (276)
.-.++|.+-+|++.+ ..|....++|.++++-
T Consensus 16 ~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~l 46 (94)
T cd02974 16 RLENPVELVASLDDS-EKSAELLELLEEIASL 46 (94)
T ss_pred hCCCCEEEEEEeCCC-cchHHHHHHHHHHHHh
Confidence 356789999999988 9999999999999985
No 213
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=44.17 E-value=38 Score=29.11 Aligned_cols=64 Identities=28% Similarity=0.298 Sum_probs=44.9
Q ss_pred CCceEEEEecCCCCC-CCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCC
Q 023845 41 GGAVLVELFSSQGCK-TSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLD 116 (276)
Q Consensus 41 ~~~vvVElFTSqGCs-sCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~ 116 (276)
++++|| .|---.|+ .||..-..|+++.++-.....+|-.|++-+|++ +|+ -++-+.|++.++.+
T Consensus 52 Gk~~lv-~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~-----~DT------p~~L~~Y~~~~~~~ 116 (174)
T PF02630_consen 52 GKWVLV-FFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPE-----RDT------PEVLKKYAKKFGPD 116 (174)
T ss_dssp TSEEEE-EEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTT-----TC-------HHHHHHHHHCHTTT
T ss_pred CCeEEE-EEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCC-----CCC------HHHHHHHHHhcCCC
Confidence 344444 67777885 699999888888765322256899999999964 232 57889999998744
No 214
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=43.13 E-value=35 Score=32.66 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=30.7
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeee
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVD 86 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVd 86 (276)
++++|| .|.+.+|++|-.-...+.+|++......+.|....+.++
T Consensus 364 ~~~vlv-~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~ 408 (462)
T TIGR01130 364 TKDVLV-EFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDAT 408 (462)
T ss_pred CCeEEE-EEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECC
Confidence 445555 677788999998888999998865311125666666554
No 215
>PRK10026 arsenate reductase; Provisional
Probab=42.84 E-value=17 Score=30.92 Aligned_cols=23 Identities=17% Similarity=0.473 Sum_probs=20.6
Q ss_pred EEEecCCCCCCCHHHHHHHHHhc
Q 023845 46 VELFSSQGCKTSPEAEILVSRLG 68 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~ 68 (276)
|-+|+..+||+|=.|-+||.+-.
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~g 26 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNSG 26 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCC
Confidence 67999999999999999999753
No 216
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=42.14 E-value=41 Score=27.84 Aligned_cols=43 Identities=23% Similarity=0.418 Sum_probs=30.1
Q ss_pred CCCccccHHHHHHHHH---------hCCCCCCcceEEEcCeEeccCCChhhHHHHH
Q 023845 97 YGSSQWTVRQKAYVEA---------LNLDTMFTPQLVFQGRVQCQGNDQDGMLSAI 143 (276)
Q Consensus 97 fa~~~~t~Rq~~Y~~~---------~g~~~vYTPq~vVnG~~~~~g~~~~~~~~~i 143 (276)
|.+|.+.++|+..... +|+.. .|.+|||++..+-|- ..+..++
T Consensus 55 l~sp~~~~~q~~l~~Ayqgv~~Aw~lGi~k--~PAVV~D~~~VVYG~--~DV~~A~ 106 (113)
T TIGR03757 55 LQSPDWARLQRRLAQAYQGVADAWQLGVTK--IPAVVVDRRYVVYGE--TDVARAL 106 (113)
T ss_pred HcCccHHHHHHHHHHHHHHHHHHHHcCCcc--CCEEEEcCCeEEecC--ccHHHHH
Confidence 6677777777765543 47777 999999999777664 3344443
No 217
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=41.90 E-value=69 Score=25.97 Aligned_cols=64 Identities=17% Similarity=0.043 Sum_probs=40.2
Q ss_pred hhcCCceEEEEecCC---CCCCCHHH--HHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHH
Q 023845 38 MRRGGAVLVELFSSQ---GCKTSPEA--EILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEA 112 (276)
Q Consensus 38 ~~~~~~vvVElFTSq---GCssCP~A--d~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~ 112 (276)
...++.++|-|++.+ .|..|-.- +.-+.++-+ .+.|..+..|++ .-.+..+..
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln------~~fv~w~~dv~~----------------~eg~~la~~ 71 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN------TRMLFWACSVAK----------------PEGYRVSQA 71 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH------cCEEEEEEecCC----------------hHHHHHHHH
Confidence 466678888888875 56667110 111122222 378888888873 224667888
Q ss_pred hCCCCCCcceEEE
Q 023845 113 LNLDTMFTPQLVF 125 (276)
Q Consensus 113 ~g~~~vYTPq~vV 125 (276)
++.++ .|.++|
T Consensus 72 l~~~~--~P~~~~ 82 (116)
T cd02991 72 LRERT--YPFLAM 82 (116)
T ss_pred hCCCC--CCEEEE
Confidence 88888 888554
No 218
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=41.41 E-value=58 Score=26.71 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=21.5
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcc
Q 023845 46 VELFSSQGCKTSPEAEILVSRLGR 69 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~~ 69 (276)
|-+|.+..|++|=.|.+||.+-.-
T Consensus 3 itiy~~p~C~t~rka~~~L~~~gi 26 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHGI 26 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCC
Confidence 679999999999999999998554
No 219
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=40.60 E-value=1e+02 Score=27.57 Aligned_cols=57 Identities=23% Similarity=0.148 Sum_probs=41.2
Q ss_pred eEEEEecCCCCCC-CHHHHHHHHHhcccCC-CCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHH
Q 023845 44 VLVELFSSQGCKT-SPEAEILVSRLGRGDF-ELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVE 111 (276)
Q Consensus 44 vvVElFTSqGCss-CP~Ad~~l~~l~~~~~-~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~ 111 (276)
+.|=.|.=--||. ||-.-..|..+.++-. +.+.+|.++.+-||.++ |+ -++.+.|+.
T Consensus 69 ~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPer-----Dt------p~~lk~Y~~ 127 (207)
T COG1999 69 PSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPER-----DT------PEVLKKYAE 127 (207)
T ss_pred EEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCC-----CC------HHHHHHHhc
Confidence 4444555556886 9988876666665443 44789999999999744 44 688899998
No 220
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=40.58 E-value=21 Score=29.68 Aligned_cols=23 Identities=13% Similarity=0.468 Sum_probs=20.5
Q ss_pred EEEecCCCCCCCHHHHHHHHHhc
Q 023845 46 VELFSSQGCKTSPEAEILVSRLG 68 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~ 68 (276)
|-+|...+|++|=.|-+||.+-.
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~g 25 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKASG 25 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCC
Confidence 56899999999999999999753
No 221
>PLN02412 probable glutathione peroxidase
Probab=40.43 E-value=43 Score=28.44 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=30.0
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeec
Q 023845 41 GGAVLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDY 87 (276)
Q Consensus 41 ~~~vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdY 87 (276)
.+++||- |....|+.|-..-..|.+|.+++. ..++..+++..|.
T Consensus 29 gk~vlv~-f~a~~C~~c~~e~~~l~~l~~~~~--~~g~~vvgv~~~~ 72 (167)
T PLN02412 29 GKVLLIV-NVASKCGLTDSNYKELNVLYEKYK--EQGFEILAFPCNQ 72 (167)
T ss_pred CCEEEEE-EeCCCCCChHHHHHHHHHHHHHHh--hCCcEEEEecccc
Confidence 3455554 557779999876667888877763 3468888887763
No 222
>COG5204 SPT4 Transcription elongation factor SPT4 [Transcription]
Probab=38.45 E-value=13 Score=30.11 Aligned_cols=14 Identities=29% Similarity=0.710 Sum_probs=11.6
Q ss_pred EEEecCCCCCCCHH
Q 023845 46 VELFSSQGCKTSPE 59 (276)
Q Consensus 46 VElFTSqGCssCP~ 59 (276)
.-.|...||++||-
T Consensus 21 ~n~F~~dGCpNc~~ 34 (112)
T COG5204 21 LNGFRKDGCPNCPM 34 (112)
T ss_pred cccccccCCCCCcc
Confidence 34689999999995
No 223
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=35.98 E-value=67 Score=26.59 Aligned_cols=43 Identities=26% Similarity=0.471 Sum_probs=29.8
Q ss_pred CCCccccHHHHHHHHH---------hCCCCCCcceEEEcCeEeccCCChhhHHHHH
Q 023845 97 YGSSQWTVRQKAYVEA---------LNLDTMFTPQLVFQGRVQCQGNDQDGMLSAI 143 (276)
Q Consensus 97 fa~~~~t~Rq~~Y~~~---------~g~~~vYTPq~vVnG~~~~~g~~~~~~~~~i 143 (276)
|.+|.|...|+..... +|+.. .|.+|||++..+-|- ..+..++
T Consensus 54 l~s~~~~~~q~~L~~Ayqgv~~Aw~lgi~k--~PAVVfD~~~VVYG~--tDV~~A~ 105 (114)
T PF07511_consen 54 LQSPDWQQLQQQLAQAYQGVVDAWSLGITK--YPAVVFDDRYVVYGE--TDVARAL 105 (114)
T ss_pred HcCccHHHHHHHHHHHHHHHHHHHHhCccc--cCEEEEcCCeEEecc--cHHHHHH
Confidence 5667777777765544 47777 999999999887764 3344443
No 224
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=35.16 E-value=13 Score=30.71 Aligned_cols=12 Identities=25% Similarity=0.590 Sum_probs=6.7
Q ss_pred ecCCCCCCCHHH
Q 023845 49 FSSQGCKTSPEA 60 (276)
Q Consensus 49 FTSqGCssCP~A 60 (276)
|+|-||-.||.|
T Consensus 163 ~~r~GC~~C~~~ 174 (174)
T PF01507_consen 163 YSRVGCWPCTRP 174 (174)
T ss_dssp -SS--BTTTB--
T ss_pred CCCcCCccCCCC
Confidence 899999999965
No 225
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=34.16 E-value=2.6e+02 Score=23.60 Aligned_cols=88 Identities=13% Similarity=0.087 Sum_probs=61.4
Q ss_pred ceEEEEecCCC--CCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCc
Q 023845 43 AVLVELFSSQG--CKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFT 120 (276)
Q Consensus 43 ~vvVElFTSqG--CssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYT 120 (276)
...|=+|+|.. ++-+.-.-.+|.+|++++. ..+|...-..+| .+ ...+.++|+++ +
T Consensus 35 ~~~vl~~~gdp~r~~E~~D~avvleELa~e~~--~~~v~~akVDiD----------------~~--~~LA~~fgV~s--i 92 (132)
T PRK11509 35 PDGVVLLSSDPKRTPEVSDNPVMIGELLREFP--DYTWQVAIADLE----------------QS--EAIGDRFGVFR--F 92 (132)
T ss_pred CcEEEEeCCCCCcCCccccHHHHHHHHHHHhc--CCceEEEEEECC----------------CC--HHHHHHcCCcc--C
Confidence 35666888864 5666777788999999862 235777777666 22 56799999999 6
Q ss_pred ce--EEEcCeEec--cC-CChhhHHHHHHcCCCCCCC
Q 023845 121 PQ--LVFQGRVQC--QG-NDQDGMLSAIANAPKFPAP 152 (276)
Q Consensus 121 Pq--~vVnG~~~~--~g-~~~~~~~~~i~~~~~~~~~ 152 (276)
|+ ++=||+..- .| .+++.+.+.|.+.+.++.+
T Consensus 93 PTLl~FkdGk~v~~i~G~~~k~~l~~~I~~~L~~~~~ 129 (132)
T PRK11509 93 PATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQE 129 (132)
T ss_pred CEEEEEECCEEEEEEeCcCCHHHHHHHHHHHhcCcCc
Confidence 66 445787543 33 3678888888887766643
No 226
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=33.98 E-value=63 Score=29.71 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=29.2
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeee
Q 023845 44 VLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVD 86 (276)
Q Consensus 44 vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVd 86 (276)
+||=.|...+|+.|-.--..|.+|.+++. ..++..|++..+
T Consensus 101 ~vvl~FwAswCp~c~~e~p~L~~L~~~~~--~~Gv~VIgV~~d 141 (236)
T PLN02399 101 VLLIVNVASKCGLTSSNYSELSHLYEKYK--TQGFEILAFPCN 141 (236)
T ss_pred eEEEEEEcCCCcchHHHHHHHHHHHHHHh--cCCcEEEEEecc
Confidence 45555668889999877778888887764 345677777665
No 227
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=30.18 E-value=48 Score=33.23 Aligned_cols=31 Identities=10% Similarity=-0.011 Sum_probs=27.7
Q ss_pred hcCCceEEEEecCCCCCCCHHHHHHHHHhccc
Q 023845 39 RRGGAVLVELFSSQGCKTSPEAEILVSRLGRG 70 (276)
Q Consensus 39 ~~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~ 70 (276)
.-.++|-+.+|++ .|..|.....+|.+|++-
T Consensus 16 ~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~ 46 (517)
T PRK15317 16 LLERPIELVASLD-DSEKSAELKELLEEIASL 46 (517)
T ss_pred hCCCCEEEEEEeC-CCchHHHHHHHHHHHHHh
Confidence 4567899999999 799999999999999984
No 228
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=29.53 E-value=2.1e+02 Score=20.31 Aligned_cols=24 Identities=13% Similarity=0.074 Sum_probs=19.2
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcc
Q 023845 46 VELFSSQGCKTSPEAEILVSRLGR 69 (276)
Q Consensus 46 VElFTSqGCssCP~Ad~~l~~l~~ 69 (276)
+.||.+.+|++|-.+--.|+++.-
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~ 24 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKI 24 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCC
Confidence 358999999999888778887654
No 229
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=27.60 E-value=2.3e+02 Score=24.43 Aligned_cols=75 Identities=13% Similarity=0.121 Sum_probs=45.1
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceE
Q 023845 44 VLVELFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQL 123 (276)
Q Consensus 44 vvVElFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~ 123 (276)
..+.||+..+|+.|=..--+|.++.-.+ .++ +||.+ .+...|.+..-... +|.+
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~~-----e~~----~v~~~---------------~~~~~~~~~nP~g~--VPvL 62 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVSV-----EIE----QVEKD---------------NLPQDLIDLNPYQS--VPTL 62 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCCC-----EEE----eCCcc---------------cCCHHHHHhCCCCC--CCEE
Confidence 3579999999999888887788765432 222 33321 11234555433334 9999
Q ss_pred EEcCeEeccCCChhhHHHHHHcCC
Q 023845 124 VFQGRVQCQGNDQDGMLSAIANAP 147 (276)
Q Consensus 124 vVnG~~~~~g~~~~~~~~~i~~~~ 147 (276)
+.||.... +-..+..+|.+..
T Consensus 63 ~~~g~~l~---ES~AIl~YL~~~~ 83 (211)
T PRK09481 63 VDRELTLY---ESRIIMEYLDERF 83 (211)
T ss_pred EECCEEee---CHHHHHHHHHHhC
Confidence 98886543 3455666666543
No 230
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=27.23 E-value=16 Score=28.38 Aligned_cols=12 Identities=42% Similarity=0.833 Sum_probs=9.2
Q ss_pred CCCCCCCHHHHH
Q 023845 51 SQGCKTSPEAEI 62 (276)
Q Consensus 51 SqGCssCP~Ad~ 62 (276)
|-+|+|||++..
T Consensus 58 sGsCk~C~e~~~ 69 (78)
T PRK15431 58 SGSCKSCPEGKA 69 (78)
T ss_pred CCCCCCCCCCcc
Confidence 457999998764
No 231
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=25.59 E-value=35 Score=25.31 Aligned_cols=22 Identities=23% Similarity=0.593 Sum_probs=15.3
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHH
Q 023845 43 AVLVELFSSQGCKTSPEAEILVSR 66 (276)
Q Consensus 43 ~vvVElFTSqGCssCP~Ad~~l~~ 66 (276)
.|.|.| +=.|++||.++.-|..
T Consensus 28 ~V~V~l--~GaC~gC~~s~~Tl~~ 49 (68)
T PF01106_consen 28 VVYVRL--TGACSGCPSSDMTLKQ 49 (68)
T ss_dssp EEEEEE--ESSCCSSCCHHHHHHH
T ss_pred EEEEEE--EeCCCCCCCHHHHHHH
Confidence 344444 5689999999887743
No 232
>PF09463 Opy2: Opy2 protein; InterPro: IPR018571 Opy2p acts as a membrane anchor in the HOG signalling pathway []. This entry represents a conserved N-terminal domain.
Probab=24.86 E-value=27 Score=23.13 Aligned_cols=13 Identities=31% Similarity=0.779 Sum_probs=10.9
Q ss_pred EecCCCCCCCHHH
Q 023845 48 LFSSQGCKTSPEA 60 (276)
Q Consensus 48 lFTSqGCssCP~A 60 (276)
.||++.|.+||..
T Consensus 21 ~~t~~tC~~C~~~ 33 (35)
T PF09463_consen 21 VLTSQTCTSCPTT 33 (35)
T ss_pred EecCCChhhcccc
Confidence 5889999999863
No 233
>PRK13794 hypothetical protein; Provisional
Probab=24.38 E-value=26 Score=35.39 Aligned_cols=49 Identities=24% Similarity=0.471 Sum_probs=31.7
Q ss_pred eEEEE-ecCCCCCCCHHHHHH-HHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCC
Q 023845 44 VLVEL-FSSQGCKTSPEAEIL-VSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLD 116 (276)
Q Consensus 44 vvVEl-FTSqGCssCP~Ad~~-l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~ 116 (276)
.+-+. |+|-||..||.+... |..+.. +|=++|+ .|...-+.|+++.|.+
T Consensus 406 pLY~~G~~riGC~~Cp~~~~~e~~~i~~-------------~~Pe~~~-----------~w~~~l~~~~~~~g~~ 456 (479)
T PRK13794 406 KLYEQGFDRIGCFMCPAMELGEIELIKA-------------EYPELWE-----------KWENFLKAWAKKHGLS 456 (479)
T ss_pred hHHHCCCCCCccccCcCcCHHHHHHHHH-------------HCHHHHH-----------HHHHHHHHHHHhcCCC
Confidence 34455 999999999998522 233333 3445554 2567778888887865
No 234
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=23.46 E-value=2.8e+02 Score=19.77 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=42.7
Q ss_pred EecCCCCCCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceEEEcC
Q 023845 48 LFSSQGCKTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQLVFQG 127 (276)
Q Consensus 48 lFTSqGCssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~vVnG 127 (276)
||...+|++|=.+.-+|....=.+ .+ ..++.++. + ..|.+...... +|.++.||
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~-----~~----~~v~~~~~--------------~-~~~~~~~p~~~--vPvL~~~g 54 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPY-----EL----VPVDPEEK--------------R-PEFLKLNPKGK--VPVLVDDG 54 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEE-----EE----EEEBTTST--------------S-HHHHHHSTTSB--SSEEEETT
T ss_pred CCCcCCChHHHHHHHHHHHcCCeE-----EE----eccCcccc--------------h-hHHHhhccccc--ceEEEECC
Confidence 788999999999988888654321 11 23332210 1 23344444444 99999888
Q ss_pred eEeccCCChhhHHHHHHcCC
Q 023845 128 RVQCQGNDQDGMLSAIANAP 147 (276)
Q Consensus 128 ~~~~~g~~~~~~~~~i~~~~ 147 (276)
.... +-..+...|.+..
T Consensus 55 ~~l~---dS~~I~~yL~~~~ 71 (75)
T PF13417_consen 55 EVLT---DSAAIIEYLEERY 71 (75)
T ss_dssp EEEE---SHHHHHHHHHHHS
T ss_pred EEEe---CHHHHHHHHHHHc
Confidence 7443 3566777776544
No 235
>PF05407 Peptidase_C27: Rubella virus endopeptidase; InterPro: IPR008738 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C27 (clan CA). The type example is the rubella virus endopeptidase (Rubella virus), which is required for processing of the rubella virus replication protein.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity
Probab=23.06 E-value=34 Score=28.77 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=13.9
Q ss_pred EEecCCCCCCCHHHHHHHHH
Q 023845 47 ELFSSQGCKTSPEAEILVSR 66 (276)
Q Consensus 47 ElFTSqGCssCP~Ad~~l~~ 66 (276)
--|||-||+.|.-.. .|++
T Consensus 60 gaytsagcprcaygr-alse 78 (166)
T PF05407_consen 60 GAYTSAGCPRCAYGR-ALSE 78 (166)
T ss_pred ccccccCCchhhhhh-hhhh
Confidence 469999999997553 3443
No 236
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=22.71 E-value=81 Score=31.69 Aligned_cols=31 Identities=16% Similarity=0.072 Sum_probs=27.3
Q ss_pred hcCCceEEEEecCCCCCCCHHHHHHHHHhccc
Q 023845 39 RRGGAVLVELFSSQGCKTSPEAEILVSRLGRG 70 (276)
Q Consensus 39 ~~~~~vvVElFTSqGCssCP~Ad~~l~~l~~~ 70 (276)
.-+++|.|.+|++ .|..|.....+|.+|++-
T Consensus 16 ~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~ 46 (515)
T TIGR03140 16 SLENPVTLVLSAG-SHEKSKELLELLDEIASL 46 (515)
T ss_pred hcCCCEEEEEEeC-CCchhHHHHHHHHHHHHh
Confidence 3567899999999 799999999999999884
No 237
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=22.23 E-value=32 Score=27.17 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=15.3
Q ss_pred ecCCCCCCCHHHHHHHHHh
Q 023845 49 FSSQGCKTSPEAEILVSRL 67 (276)
Q Consensus 49 FTSqGCssCP~Ad~~l~~l 67 (276)
|....|++|=.|.+||.+-
T Consensus 1 Y~~~~C~t~rka~~~L~~~ 19 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN 19 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT
T ss_pred CcCCCCHHHHHHHHHHHHc
Confidence 7788999999999999974
No 238
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=20.83 E-value=2.7e+02 Score=23.39 Aligned_cols=73 Identities=8% Similarity=-0.006 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHhcccCCCCCCCEEEEEEeeecccCCCCCCCCCCccccHHHHHHHHHhCCCCCCcceEEEcCeEeccCC
Q 023845 55 KTSPEAEILVSRLGRGDFELGVPVIVLAYHVDYWDYMGWKDPYGSSQWTVRQKAYVEALNLDTMFTPQLVFQGRVQCQGN 134 (276)
Q Consensus 55 ssCP~Ad~~l~~l~~~~~~~~~~VIaLa~hVdYWDylGWkD~fa~~~~t~Rq~~Y~~~~g~~~vYTPq~vVnG~~~~~g~ 134 (276)
..|-|.+++++...+. .+++|+||...+ ..-..-.+-....++.|++. +-+++.|.......
T Consensus 36 G~~v~~e~~v~aa~~~----~adiVglS~l~~-----------~~~~~~~~~~~~l~~~gl~~---~~vivGG~~vi~~~ 97 (134)
T TIGR01501 36 GVLSPQEEFIKAAIET----KADAILVSSLYG-----------HGEIDCKGLRQKCDEAGLEG---ILLYVGGNLVVGKQ 97 (134)
T ss_pred CCCCCHHHHHHHHHHc----CCCEEEEecccc-----------cCHHHHHHHHHHHHHCCCCC---CEEEecCCcCcChh
Confidence 4566678899888775 579999998664 22223333444456666654 34889986544433
Q ss_pred ChhhHHHHHHc
Q 023845 135 DQDGMLSAIAN 145 (276)
Q Consensus 135 ~~~~~~~~i~~ 145 (276)
+.......+++
T Consensus 98 d~~~~~~~l~~ 108 (134)
T TIGR01501 98 DFPDVEKRFKE 108 (134)
T ss_pred hhHHHHHHHHH
Confidence 33333344443
No 239
>PF06093 Spt4: Spt4/RpoE2 zinc finger; InterPro: IPR022800 This entry consists of several eukaryotic transcription elongation Spt4 proteins as well as archaebacterial RpoE2 []. Three transcription-elongation factors Spt4, Spt5, and Spt6 are conserved among eukaryotes and are essential for transcription via the modulation of chromatin structure. Spt4 and Spt5 are tightly associated in a complex, while the physical association of the Spt4-Spt5 complex with Spt6 is considerably weaker. It has been demonstrated that Spt4, Spt5, and Spt6 play roles in transcription elongation in both yeast and humans including a role in activation by Tat. It is known that Spt4, Spt5, and Spt6 are general transcription-elongation factors, controlling transcription both positively and negatively in important regulatory and developmental roles []. RpoE2 is one of 13 subunits in the archaeal RNA polymerase. These proteins contain a C4-type zinc finger, and the structure has been solved in []. The structure reveals that Spt4-Spt5 binding is governed by an acid-dipole interaction between Spt5 and Spt4, and the complex binds to and travels along the elongating RNA polymerase. The Spt4-Spt5 complex is likely to be an ancient, core component of the transcription elongation machinery. ; PDB: 2EXU_A 3H7H_A 3LPE_F 3P8B_A 1RYQ_A 3QQC_E.
Probab=20.60 E-value=22 Score=27.34 Aligned_cols=10 Identities=30% Similarity=0.850 Sum_probs=6.4
Q ss_pred EecCCCCCCC
Q 023845 48 LFSSQGCKTS 57 (276)
Q Consensus 48 lFTSqGCssC 57 (276)
-|..+||++|
T Consensus 15 qF~~~gCpnC 24 (77)
T PF06093_consen 15 QFRDEGCPNC 24 (77)
T ss_dssp HHHHH--TTT
T ss_pred HccCCCCCCC
Confidence 4677899999
No 240
>KOG3490 consensus Transcription elongation factor SPT4 [Transcription]
Probab=20.28 E-value=34 Score=28.15 Aligned_cols=13 Identities=31% Similarity=0.861 Sum_probs=11.6
Q ss_pred EEEecCCCCCCCH
Q 023845 46 VELFSSQGCKTSP 58 (276)
Q Consensus 46 VElFTSqGCssCP 58 (276)
++-|--.||++||
T Consensus 20 ~~~F~~dGC~Nc~ 32 (111)
T KOG3490|consen 20 LNGFRKDGCENCP 32 (111)
T ss_pred hhhhhhcCCCCch
Confidence 5679999999999
No 241
>PRK08576 hypothetical protein; Provisional
Probab=20.19 E-value=55 Score=32.95 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=19.9
Q ss_pred ecCCCCCCCHHHHHHHHHhcccC
Q 023845 49 FSSQGCKTSPEAEILVSRLGRGD 71 (276)
Q Consensus 49 FTSqGCssCP~Ad~~l~~l~~~~ 71 (276)
|+|-||..||-...+=.++.++.
T Consensus 395 y~rIGC~~Cp~~~~~e~~~~~~~ 417 (438)
T PRK08576 395 FYRLGCYICPSLRSWEIELLKRL 417 (438)
T ss_pred CCccCCcCCcchHhHHHHHHhcc
Confidence 68999999999999888887754
No 242
>PHA02942 putative transposase; Provisional
Probab=20.09 E-value=44 Score=32.81 Aligned_cols=11 Identities=27% Similarity=0.555 Sum_probs=10.1
Q ss_pred ecCCCCCCCHH
Q 023845 49 FSSQGCKTSPE 59 (276)
Q Consensus 49 FTSqGCssCP~ 59 (276)
||||-||.|-.
T Consensus 323 yTSq~Cs~CG~ 333 (383)
T PHA02942 323 YSSVSCPKCGH 333 (383)
T ss_pred CCCccCCCCCC
Confidence 89999999974
Done!