Citrus Sinensis ID: 023846

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
Protein Sequence
MAKKEAKEEEKAAASLAEPRTNPSVEDTGMVRNSLTLSPPKPSWFTPGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGHYNWRYAFWGEAILMFPFAVLGFVMKPLQLKGFAPAESKKAFTDIEIAFPEAQGDTHCSSEE
Secondary Structure (PSIPRED)
cccccccHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHcccHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccEEEEEEcHHHHHHHHHHHHHHcccccccccccccccccccHHccEEEEEccccccccc
Coil and Loop (DISEMBL)
MAKKEAKEEEKAAASlaeprtnpsvedtgmvrnsltlsppkpswftpgrLLVIFCFINLlnyvdrgtiasngvngspkncsangtctpgtgiqgdfdlnnfqdgvlSSAFMVGLLVASPIFAslarsvnpfrliGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEasfislaapfiddnapvakKTAWLGVFYMCLPSGYAIGYVYGGWVGHYNWRYAFWGEAILMFPFAVLGFVmkplqlkgfapaeskkAFTDIeiafpeaqgdthcssee
Flexible Loop (DISEMBL)
MAKKEAKEEEkaaaslaeprtnpsvedtgmvrNSLTlsppkpswftpGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGHYNWRYAFWGEAILMFPFAVLGFVMKPLQLKGFAPAESKKAFTDIEIAFpeaqgdthcssee
Low Complexity Region (SEG)
MakkeakeeekaaaSLAEPRTNPSVEDTGMVRNSLTLSPPKPSWFTPGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGHYNWRYAFWGEAILMFPFAVLGFVMKPLQLKGFAPAESKKAFTDIEIAFPEAQGDTHCSSEE
Disordered region (IsUnstruct)
******************************************SWFTPGRLLVIFCFINLLNYVDRGTIASNGVNG**KNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGHYNWRYAFWGEAILMFPFAVLGFVMKPLQLKGFAPAESKKAFTDIEIAF*************
Disordered Region (DISOPRED)
********************************************FTPGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGHYNWRYAFWGEAILMFPFAVLGFVMK************************************
Disordered Region (DISEMBL)
************************VEDTGMVRNSLTLSPPKPSWFTPGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGHYNWRYAFWGEAILMFPFAVLGFVMKPLQLKGFAPAESKKAFTDIEIAFPE***********
Disordered Region (DISPRO)
*****************************************PSWFTPGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGHYNWRYAFWGEAILMFPFAVLGFVMKPLQL**********AFTDIEIAFPEAQGDTH*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKKEAKEEEKAAASLAEPRTNPSVEDTGMVRNSLTLSPPKPSWFTPGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGHYNWRYAFWGEAILMFPFAVLGFVMKPLQLKGFAPAESKKAFTDIEIAFPEAQGDTHCSSEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	276	2.2.26 [Sep-21-2011]
Q9FLG8	484	Probable sphingolipid tra	yes	no	0.880	0.502	0.684	4e-89
F4IKF6	510	Probable sphingolipid tra	no	no	0.778	0.421	0.702	7e-87
Q6NMN6	492	Probable sphingolipid tra	no	no	0.822	0.461	0.666	9e-86
Q9GQQ0	605	Protein spinster OS=Droso	no	no	0.663	0.302	0.315	4e-19
Q2YDU8	528	Protein spinster homolog	yes	no	0.550	0.287	0.314	4e-17
Q8R0G7	528	Protein spinster homolog	yes	no	0.550	0.287	0.314	4e-17
Q9H2V7	528	Protein spinster homolog	no	no	0.568	0.297	0.306	7e-17
Q08DX7	528	Protein spinster homolog	yes	no	0.659	0.344	0.293	8e-17
A2CER7	498	Protein spinster homolog	yes	no	0.561	0.311	0.301	1e-16
Q91VM4	549	Protein spinster homolog	no	no	0.695	0.349	0.288	1e-15

>sp|Q9FLG8|SPNS2_ARATH Probable sphingolipid transporter spinster homolog 2 OS=Arabidopsis thaliana GN=At5g64500 PE=2 SV=1

 Score =  327 bits (839), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 171/250 (68%), Positives = 203/250 (81%), Gaps = 7/250 (2%)

Query: 22  NPSVEDTGMVRNSLTLSPP--KPSWFTPGRLLVIFCFINLLNYVDRGTIASNGVNGSPKN 79
           NP +    M R+S ++  P  +PSWFTP +LL +FC +NL+NY+DRG IASNG+NGS  +
Sbjct: 12  NPRI----MERDSDSIKDPISEPSWFTPKKLLFVFCVVNLINYIDRGAIASNGINGSRGS 67

Query: 80  CSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLT 139
           C+++GTC+ G+GIQGDF+L+NF+DGVLSSAFMVGLLVASPIFASLA+SVNPFRLIGVGL+
Sbjct: 68  CTSSGTCSSGSGIQGDFNLSNFEDGVLSSAFMVGLLVASPIFASLAKSVNPFRLIGVGLS 127

Query: 140 VWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCL 199
           +WTLAV+GCG SF FW I ICRM VGVGEASF+SLAAPFIDDNAP  +K+AWL VFYMC+
Sbjct: 128 IWTLAVIGCGLSFDFWSITICRMFVGVGEASFVSLAAPFIDDNAPHDQKSAWLAVFYMCI 187

Query: 200 PSGYAIGYVYGGWVGH-YNWRYAFWGEAILMFPFAVLGFVMKPLQLKGFAPAESKKAFTD 258
           P+GYA GYVYGG VG    WR AFWGEAILM PFAVLGFV+KPL LKGFAP ++ K  TD
Sbjct: 188 PTGYAFGYVYGGVVGSVLPWRAAFWGEAILMLPFAVLGFVIKPLHLKGFAPDDTGKPRTD 247

Query: 259 IEIAFPEAQG 268
                P   G
Sbjct: 248 NLNVLPVGYG 257

Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage.
Arabidopsis thaliana (taxid: 3702)

>sp|F4IKF6|SPNS3_ARATH Probable sphingolipid transporter spinster homolog 3 OS=Arabidopsis thaliana GN=At2g22730 PE=3 SV=1

 Score =  320 bits (820), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 163/232 (70%), Positives = 190/232 (81%), Gaps = 17/232 (7%)

Query: 16  LAEPRTNPSVEDTGMVRNSLTLSPPKPSWFTPGRLLVIFCFINLLNYVDRGTIASNGVNG 75
           LAE  T  S+E   +V +S +LSP    W     LLVIFC INLLNY+DRG IASNGVNG
Sbjct: 28  LAELETVRSLE---IVESSSSLSPV---W-----LLVIFCIINLLNYMDRGAIASNGVNG 76

Query: 76  SPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIG 135
           S ++C+  G CT  TGIQG F+L+NF+DGVLSS+FMVGLL+ASPIFASLA+     RLIG
Sbjct: 77  STRSCNDKGKCTLATGIQGHFNLSNFEDGVLSSSFMVGLLIASPIFASLAK-----RLIG 131

Query: 136 VGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVF 195
           VGLTVWT+AV+GCG SF+FW I +CRM VGVGEASFISLAAPFIDDNAP  +K AWLG+F
Sbjct: 132 VGLTVWTIAVLGCGSSFAFWFIVLCRMFVGVGEASFISLAAPFIDDNAPQEQKAAWLGLF 191

Query: 196 YMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQLKG 246
           YMC+PSG A+GYVYGG+VG H++WRYAFWGEA+LM PFAVLGF+MKPLQLKG
Sbjct: 192 YMCIPSGVALGYVYGGYVGKHFSWRYAFWGEAVLMAPFAVLGFLMKPLQLKG 243

Probable sphingolipid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NMN6|SPNS1_ARATH Probable sphingolipid transporter spinster homolog 1 OS=Arabidopsis thaliana GN=At5g65687 PE=1 SV=1

 Score =  317 bits (811), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 154/231 (66%), Positives = 186/231 (80%), Gaps = 4/231 (1%)

Query: 38  SPP--KPSWFTPGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGD 95
           +PP  K  + TPGR + I C INL+NYVDRG IASNGVNGS K C A G C+ GTGIQG+
Sbjct: 15  APPATKKRFLTPGRFVTILCIINLINYVDRGVIASNGVNGSSKVCDAKGVCSAGTGIQGE 74

Query: 96  FDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFW 155
           F+L NF+DG+LSSAFMVGLLVASPIFA L++  NPF+LIGVGLTVWT+AV+GCGFS++FW
Sbjct: 75  FNLTNFEDGLLSSAFMVGLLVASPIFAGLSKRFNPFKLIGVGLTVWTIAVIGCGFSYNFW 134

Query: 156 MIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG- 214
           MIA+ RM VGVGEASFISLAAP+IDD+APVA+K  WLG+FYMC+P+G A+GYV+GG++G 
Sbjct: 135 MIAVFRMFVGVGEASFISLAAPYIDDSAPVARKNFWLGLFYMCIPAGVALGYVFGGYIGN 194

Query: 215 HYNWRYAFWGEAILMFPFAVLGFVMK-PLQLKGFAPAESKKAFTDIEIAFP 264
           H  WR+AF+ EAI M  F +L F +K P QLKGFA  +SKK  T IE   P
Sbjct: 195 HLGWRWAFYIEAIAMAVFVILSFCIKPPQQLKGFADKDSKKPSTSIETVAP 245

Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9GQQ0|SPIN_DROME Protein spinster OS=Drosophila melanogaster GN=spin PE=1 SV=1

 Score = 95.1 bits (235), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 105/209 (50%), Gaps = 26/209 (12%)

Query: 23  PSVEDTGMVRNSLTLSPPKPSWFTPGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSA 82
           P +  + +V + L+ S  +  WFT    + + CF+NL+NY+DR TIA  GV         
Sbjct: 94  PGIPPSAVVPSRLS-SVGRSQWFT----VTVLCFVNLINYMDRFTIA--GVL-------- 138

Query: 83  NGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWT 142
                  T ++ DFD+ N   G+L + F++  +V +PIF  L    +   ++ VG+ +W+
Sbjct: 139 -------TDVRNDFDIGNDSAGLLQTVFVISYMVCAPIFGYLGDRYSRPWIMAVGVGLWS 191

Query: 143 LAVVGCGFSFSF-WMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPS 201
              +   F   F W IA  R LVG+GEAS+ ++A   I D      ++  L +FY  +P 
Sbjct: 192 TTTLLGSFMKQFGWFIAF-RALVGIGEASYSTIAPTIISDLFVHDMRSKMLALFYFAIPV 250

Query: 202 GYAIGYVYGGWVGHY--NWRYAFWGEAIL 228
           G  +GY+ G    H   +WR+A     IL
Sbjct: 251 GSGLGYIVGSKTAHLANDWRWALRVTPIL 279

Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage. Involved in TGF-beta-mediated synaptic growth regulation both pre- and postsynaptically via its function in endosomal storage regulation. Also required during oogenesis by regulating yolk spheres storage.

Drosophila melanogaster (taxid: 7227)

>sp|Q2YDU8|SPNS1_RAT Protein spinster homolog 1 OS=Rattus norvegicus GN=Spns1 PE=2 SV=2

 Score = 89.0 bits (219), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 23/175 (13%)

Query: 50  LLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSA 109
           ++V+ C+INLLNY+DR T+A  GV                T I+  F++ +   G++ + 
Sbjct: 61  IVVVLCYINLLNYMDRFTVA--GVL---------------TDIEQFFNIGDGSTGLIQTV 103

Query: 110 FMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGF--SFSFWMIAICRMLVGVG 167
           F+   +V +P+F  L    N   L+  G+  W+L  +G  F     FW++ + R LVGVG
Sbjct: 104 FISSYMVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLGSSFIPREHFWLLLLTRGLVGVG 163

Query: 168 EASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWV----GHYNW 218
           EAS+ ++A   I D     +++  L +FY  +P G  +GY+ G  V    G ++W
Sbjct: 164 EASYSTIAPTLIADLFVADQRSRMLSIFYFAIPVGSGLGYIAGSKVKDLAGDWHW 218

Sphingolipid transporter. May be involved in necrotic or autophagic cell death.

Rattus norvegicus (taxid: 10116)

>sp|Q8R0G7|SPNS1_MOUSE Protein spinster homolog 1 OS=Mus musculus GN=Spns1 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 23/175 (13%)

Query: 50  LLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSA 109
           ++V+ C+INLLNY+DR T+A  GV                T I+  F++ +   G++ + 
Sbjct: 61  IVVVLCYINLLNYMDRFTVA--GVL---------------TDIEQFFNIGDGSTGLIQTV 103

Query: 110 FMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGF--SFSFWMIAICRMLVGVG 167
           F+   +V +P+F  L    N   L+  G+  W+L  +G  F     FW++ + R LVGVG
Sbjct: 104 FISSYMVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLGSSFIPREHFWLLLLTRGLVGVG 163

Query: 168 EASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWV----GHYNW 218
           EAS+ ++A   I D     +++  L +FY  +P G  +GY+ G  V    G ++W
Sbjct: 164 EASYSTIAPTLIADLFVADQRSRMLSIFYFAIPVGSGLGYIAGSKVKDVAGDWHW 218

Sphingolipid transporter. May be involved in necrotic or autophagic cell death.

Mus musculus (taxid: 10090)

>sp|Q9H2V7|SPNS1_HUMAN Protein spinster homolog 1 OS=Homo sapiens GN=SPNS1 PE=1 SV=1

 Score = 87.8 bits (216), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 93/183 (50%), Gaps = 26/183 (14%)

Query: 45  FTPGR---LLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNF 101
            +PGR   ++ + C+INLLNY+DR T+A  GV                  I+  F++ + 
Sbjct: 53  LSPGRSALIVAVLCYINLLNYMDRFTVA--GVL---------------PDIEQFFNIGDS 95

Query: 102 QDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGF--SFSFWMIAI 159
             G++ + F+   +V +P+F  L    N   L+  G+  W+L  +G  F     FW++ +
Sbjct: 96  SSGLIQTVFISSYMVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLGSSFIPGEHFWLLLL 155

Query: 160 CRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWV----GH 215
            R LVGVGEAS+ ++A   I D     +++  L +FY  +P G  +GY+ G  V    G 
Sbjct: 156 TRGLVGVGEASYSTIAPTLIADLFVADQRSRMLSIFYFAIPVGSGLGYIAGSKVKDMAGD 215

Query: 216 YNW 218
           ++W
Sbjct: 216 WHW 218

Sphingolipid transporter (By similarity). May be involved in necrotic or autophagic cell death.

Homo sapiens (taxid: 9606)

>sp|Q08DX7|SPNS1_BOVIN Protein spinster homolog 1 OS=Bos taurus GN=SPNS1 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 104/211 (49%), Gaps = 29/211 (13%)

Query: 15  SLAEPRT-NPSVEDTGMVRNSLTLSPPKPSWFTPGRLLVIFCFINLLNYVDRGTIASNGV 73
           S+  P++ +P+V D   ++    LS    +      ++ + C+INLLNY+DR T+A  GV
Sbjct: 30  SMGNPKSEDPAVPDQEGLQRITGLSSGHSAL-----IVAVLCYINLLNYMDRFTVA--GV 82

Query: 74  NGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRL 133
                             I+  FD+ +   G++ + F+   +V +P+F  L    N   L
Sbjct: 83  L---------------PDIEQFFDIGDGSSGLIQTVFISSYMVLAPVFGYLGDRYNRKYL 127

Query: 134 IGVGLTVWTLAVVGCGF--SFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAW 191
           +  G+  W+L  +G  F     FW++ + R LVGVGEAS+ ++A   I D     +++  
Sbjct: 128 MCGGIAFWSLVTLGSSFIPRERFWLLLLTRGLVGVGEASYSTIAPTLIADLFVADQRSRM 187

Query: 192 LGVFYMCLPSGYAIGYVYGGWV----GHYNW 218
           L VFY  +P G  +GY+ G  V    G ++W
Sbjct: 188 LSVFYFAIPVGSGLGYIAGSKVKDVAGDWHW 218

Sphingolipid transporter. May be involved in necrotic or autophagic cell death.

Bos taurus (taxid: 9913)

>sp|A2CER7|SPNS3_DANRE Protein spinster homolog 3 OS=Danio rerio GN=spns3 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 21/176 (11%)

Query: 51  LVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAF 110
           + + C+INLLNY+DR TIA   +                  IQ  F +++   G+L + F
Sbjct: 51  VAVLCYINLLNYMDRYTIAGVLLR-----------------IQKFFFISDSTSGLLQTVF 93

Query: 111 MVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGF--SFSFWMIAICRMLVGVGE 168
           +   +  +P+F  L    +   ++ VGL +W +  +G  F     FW++   R LVG GE
Sbjct: 94  ICSFMFLAPVFGYLGDRYDRKLIMIVGLVMWIVTTLGSSFVRKSHFWVLVATRALVGTGE 153

Query: 169 ASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGHY--NWRYAF 222
           AS+ ++A   I D    +K+T  +  FY+ +P G  +GY+ G  V     +WR+A 
Sbjct: 154 ASYSTIAPTIIGDLFAGSKRTLMISFFYIFIPVGSGLGYIIGATVADATGDWRWAL 209

Sphingolipid transporter.

Danio rerio (taxid: 7955)

>sp|Q91VM4|SPNS2_MOUSE Protein spinster homolog 2 OS=Mus musculus GN=Spns2 PE=2 SV=2

 Score = 84.0 bits (206), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 95/215 (44%), Gaps = 23/215 (10%)

Query: 40  PKPSWFTPGR--LLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFD 97
           PKP+    GR     I    N+LNY+DR T+A   ++                 IQ  F 
Sbjct: 92  PKPASLGRGRGAAAAILSLGNVLNYLDRYTVAGVLLD-----------------IQQHFG 134

Query: 98  LNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGF--SFSFW 155
           + +   G+L S F+   +VA+PIF  L    N   ++  G+  W+       F     FW
Sbjct: 135 VKDRGAGLLQSVFICSFMVAAPIFGYLGDRFNRKVILSCGIFFWSAVTFSSSFIPQQYFW 194

Query: 156 MIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGH 215
           ++ + R LVG+GEAS+ ++A   I D      +T  L VFY  +P G  +GY+ G  V  
Sbjct: 195 LLVLSRGLVGIGEASYSTIAPTIIGDLFTKNTRTLMLSVFYFAIPLGSGLGYITGSSVKQ 254

Query: 216 Y--NWRYAFWGEAILMFPFAVLGFVMKPLQLKGFA 248
              +W +A     +L      L  ++ P   +G A
Sbjct: 255 AAGDWHWALRVSPVLGMITGTLILILVPATKRGHA 289

Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate (S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
224105833	468	sugar transporter/spinster transmembrane	0.865	0.510	0.816	1e-111
255554517	541	transporter, putative [Ricinus communis]	0.974	0.497	0.734	1e-109
255576025	505	transporter, putative [Ricinus communis]	0.891	0.487	0.724	1e-101
224060977	457	sugar transporter/spinster transmembrane	0.826	0.498	0.790	1e-100
297735860	534	unnamed protein product [Vitis vinifera]	0.884	0.456	0.719	1e-100
359480514	510	PREDICTED: protein spinster homolog 1-li	0.847	0.458	0.754	1e-99
356519493	530	PREDICTED: protein spinster homolog 1-li	0.873	0.454	0.720	3e-99
356527981	537	PREDICTED: protein spinster homolog 1-li	0.782	0.402	0.798	5e-99
357485271	497	Spinster-like protein [Medicago truncatu	0.862	0.478	0.733	2e-98
356531403	496	PREDICTED: protein spinster homolog 1-li	0.858	0.477	0.735	3e-98

>gi|224105833|ref|XP_002313948.1| sugar transporter/spinster transmembrane protein [Populus trichocarpa] gi|222850356|gb|EEE87903.1| sugar transporter/spinster transmembrane protein [Populus trichocarpa]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/240 (81%), Positives = 216/240 (90%), Gaps = 1/240 (0%)

Query: 30  MVRNSLTLSPPKPSWFTPGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPG 89
           M R+S  LSPP PSWFTP RLLVIFC INL+NYVDRG IASNGVNGS + CS +GTCT G
Sbjct: 1   MARSSTALSPPAPSWFTPKRLLVIFCVINLINYVDRGAIASNGVNGSRRTCSKSGTCTFG 60

Query: 90  TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCG 149
           +GIQGDF+L+NF+DGVLSSAFMVGLLVA PIFASLA+SVNPFRLIGVGL+VWT+AVVGCG
Sbjct: 61  SGIQGDFNLSNFEDGVLSSAFMVGLLVACPIFASLAKSVNPFRLIGVGLSVWTVAVVGCG 120

Query: 150 FSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVY 209
           FSF+FW I ICRMLVGVGEASFISLAAPFIDDNAPVAKKT WLG+FYMC+P+GYA+GYVY
Sbjct: 121 FSFNFWTITICRMLVGVGEASFISLAAPFIDDNAPVAKKTLWLGIFYMCIPTGYALGYVY 180

Query: 210 GGWV-GHYNWRYAFWGEAILMFPFAVLGFVMKPLQLKGFAPAESKKAFTDIEIAFPEAQG 268
           GG + GH+NWR+AF+GEAILM PFAVLGFVMKPLQLKGFAPAESKKA T IE A  E QG
Sbjct: 181 GGLIGGHFNWRFAFYGEAILMLPFAVLGFVMKPLQLKGFAPAESKKALTSIETAVLEVQG 240

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554517|ref|XP_002518297.1| transporter, putative [Ricinus communis] gi|223542517|gb|EEF44057.1| transporter, putative [Ricinus communis]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/275 (73%), Positives = 226/275 (82%), Gaps = 6/275 (2%)

Query: 1   MAKKEAKEEEKAAASLAEPRTNPSVEDTGMVRNSLTLSPPKPSWFTPGRLLVIFCFINLL 60
           MA++E  ++ K  +S  EP  NPS  D  M +     S P PSWFTP RLLVIFC INL+
Sbjct: 1   MAEEEETKQVKPLSSSEEP--NPS-RDAQMAKVPTPSSAPAPSWFTPRRLLVIFCIINLI 57

Query: 61  NYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPI 120
           NYVDRG IASNGVNG+ + C++ GTCT G+GIQGDF+LNNF+DGVLSSAFMVGLLVASPI
Sbjct: 58  NYVDRGAIASNGVNGNRRTCTS-GTCTSGSGIQGDFNLNNFEDGVLSSAFMVGLLVASPI 116

Query: 121 FASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFID 180
           FASLA+S NPFRLIGVGL+VWTLAVVGCGFS +FW I ICRM VGVGEASFISLAAPFID
Sbjct: 117 FASLAKSFNPFRLIGVGLSVWTLAVVGCGFSINFWSITICRMFVGVGEASFISLAAPFID 176

Query: 181 DNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVM 239
           DNAPVA+KTAWL +FYMC+PSGYA GYVYGG VG H NWR+AFWGEAILM PF VLGF+M
Sbjct: 177 DNAPVAQKTAWLAIFYMCIPSGYAFGYVYGGLVGDHANWRWAFWGEAILMLPFVVLGFLM 236

Query: 240 KPLQLKGFAPAESKKAFTDIEIAFPEAQGDTHCSS 274
           KPLQLKGFAPAESKKA T +E A  E Q DT  S+
Sbjct: 237 KPLQLKGFAPAESKKALTSVETAVSEVQ-DTETSA 270

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576025|ref|XP_002528908.1| transporter, putative [Ricinus communis] gi|223531662|gb|EEF33488.1| transporter, putative [Ricinus communis]

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/250 (72%), Positives = 202/250 (80%), Gaps = 4/250 (1%)

Query: 30  MVRNSLTLSPPKPSWFTPGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPG 89
           M R S   S   PSWFTP RLL++FC IN++NYVDRG IASNGVNGS + C   G C  G
Sbjct: 1   MARTSTNDSSSDPSWFTPKRLLMLFCVINMINYVDRGAIASNGVNGSIRTCDEKGICNSG 60

Query: 90  TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCG 149
           +GIQGDF+LNNFQDGVLSSAFMVGLL+ASPIFASLA+S NPFRLIGVGL+VWT A  GCG
Sbjct: 61  SGIQGDFNLNNFQDGVLSSAFMVGLLLASPIFASLAKSHNPFRLIGVGLSVWTFAAAGCG 120

Query: 150 FSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVY 209
            SF FW IAICRMLVGVGEASFISLAAPFIDDNAP A+KTAWL  FYMC+P+G A+GYVY
Sbjct: 121 SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPAAQKTAWLATFYMCIPTGVALGYVY 180

Query: 210 GGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQLKGFAPAESKKAFT---DIEIAFPE 265
           GG+VG ++NWRYAFWGEA+LM PFAVLGF MKPLQLKGFAPAESKKA T   +   +  E
Sbjct: 181 GGFVGSNFNWRYAFWGEALLMLPFAVLGFAMKPLQLKGFAPAESKKALTSSIEANASITE 240

Query: 266 AQGDTHCSSE 275
             G+   SS 
Sbjct: 241 DNGNEDISSR 250

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060977|ref|XP_002300304.1| sugar transporter/spinster transmembrane protein [Populus trichocarpa] gi|222847562|gb|EEE85109.1| sugar transporter/spinster transmembrane protein [Populus trichocarpa]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 181/229 (79%), Positives = 201/229 (87%), Gaps = 1/229 (0%)

Query: 41  KPSWFTPGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNN 100
           KPSW TP RLL IFC INL+NYVDRG IASNGVNGS ++CS +GTCT G GIQGDF+L+N
Sbjct: 1   KPSWITPERLLAIFCVINLINYVDRGAIASNGVNGSRRSCSKSGTCTSGRGIQGDFNLSN 60

Query: 101 FQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAIC 160
           F+DGVLSSAFMVGLLVA PIFASLA+SVNPFRLIGVGL+VWT+AVVGCGFS +FW I +C
Sbjct: 61  FEDGVLSSAFMVGLLVACPIFASLAKSVNPFRLIGVGLSVWTVAVVGCGFSINFWSITVC 120

Query: 161 RMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWR 219
           RMLVGVGEASFISLAAPFIDDNAP AKKT WLG+FYM +P+GYA GYVYGG VG H++WR
Sbjct: 121 RMLVGVGEASFISLAAPFIDDNAPPAKKTLWLGMFYMFIPAGYAAGYVYGGLVGDHFSWR 180

Query: 220 YAFWGEAILMFPFAVLGFVMKPLQLKGFAPAESKKAFTDIEIAFPEAQG 268
           YAF+GEA+LM PFAVLGFVMKPLQLKGFAPAES +A T IE    E QG
Sbjct: 181 YAFFGEAVLMLPFAVLGFVMKPLQLKGFAPAESTEALTSIETTSLEVQG 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735860|emb|CBI18614.3| unnamed protein product [Vitis vinifera]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/257 (71%), Positives = 206/257 (80%), Gaps = 13/257 (5%)

Query: 20  RTNPS-------VEDTGMVRNSLTLSPPKPSWFTPGRLLVIFCFINLLNYVDRGTIASNG 72
            TNPS       +  + M +  +      PSWFTP RLL+IFC IN+LNYVDRG IASNG
Sbjct: 8   HTNPSPASNSLHIVGSEMAKTPIGDHASNPSWFTPKRLLIIFCVINMLNYVDRGAIASNG 67

Query: 73  VNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFR 132
           VNGS K CS +G CTPG+GIQGDF+L+NFQDGVLSSAFMVGLLVASPIFASLA+S NPFR
Sbjct: 68  VNGSLKTCSESGVCTPGSGIQGDFNLSNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFR 127

Query: 133 LIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWL 192
           LIGVGL+ WT A  GCG SF FW IAI RMLVGVGEASF+SLAAPFIDDNAPV +KTAWL
Sbjct: 128 LIGVGLSFWTFATAGCGSSFDFWSIAIFRMLVGVGEASFVSLAAPFIDDNAPVTQKTAWL 187

Query: 193 GVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQLKGFAPAE 251
            +FYMC+P+G A+GYVYGG+VG H+NWRYAFWGEAILM PFAVLGFVMKPLQLKGFAPAE
Sbjct: 188 AMFYMCIPTGIALGYVYGGFVGEHFNWRYAFWGEAILMLPFAVLGFVMKPLQLKGFAPAE 247

Query: 252 SKKAFTDIEIAFPEAQG 268
           SK A        PE +G
Sbjct: 248 SKNATVG-----PETEG 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480514|ref|XP_002273321.2| PREDICTED: protein spinster homolog 1-like [Vitis vinifera]

 Score =  368 bits (945), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 181/240 (75%), Positives = 200/240 (83%), Gaps = 6/240 (2%)

Query: 30  MVRNSLTLSPPKPSWFTPGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPG 89
           M +  +      PSWFTP RLL+IFC IN+LNYVDRG IASNGVNGS K CS +G CTPG
Sbjct: 1   MAKTPIGDHASNPSWFTPKRLLIIFCVINMLNYVDRGAIASNGVNGSLKTCSESGVCTPG 60

Query: 90  TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCG 149
           +GIQGDF+L+NFQDGVLSSAFMVGLLVASPIFASLA+S NPFRLIGVGL+ WT A  GCG
Sbjct: 61  SGIQGDFNLSNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSFWTFATAGCG 120

Query: 150 FSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVY 209
            SF FW IAI RMLVGVGEASF+SLAAPFIDDNAPV +KTAWL +FYMC+P+G A+GYVY
Sbjct: 121 SSFDFWSIAIFRMLVGVGEASFVSLAAPFIDDNAPVTQKTAWLAMFYMCIPTGIALGYVY 180

Query: 210 GGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQLKGFAPAESKKAFTDIEIAFPEAQG 268
           GG+VG H+NWRYAFWGEAILM PFAVLGFVMKPLQLKGFAPAESK A        PE +G
Sbjct: 181 GGFVGEHFNWRYAFWGEAILMLPFAVLGFVMKPLQLKGFAPAESKNATVG-----PETEG 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519493|ref|XP_003528407.1| PREDICTED: protein spinster homolog 1-like [Glycine max]

 Score =  367 bits (942), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 183/254 (72%), Positives = 205/254 (80%), Gaps = 13/254 (5%)

Query: 5   EAKEEEKAAASLAEPRTNPSVEDTGMVRNSLTLSPPKPSWFTPGRLLVIFCFINLLNYVD 64
           + +E E    S  EP          M  NS  +  P  SWFTP RLL IFC INLLNY+D
Sbjct: 3   QQQEHEGKPESSLEPD---------MGTNSTMI--PSTSWFTPKRLLAIFCVINLLNYLD 51

Query: 65  RGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASL 124
           RG IASNGVNGS + C   GTC  GTGIQGDF+LNNF+DGVLSSAFMVGLLVASPIFASL
Sbjct: 52  RGAIASNGVNGSQRTCEG-GTCKSGTGIQGDFNLNNFEDGVLSSAFMVGLLVASPIFASL 110

Query: 125 ARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAP 184
           A+SVNPFRLIGVGL+VWTLA + CGFSF+FW IA+CRMLVGVGEASFISLAAPFIDDNAP
Sbjct: 111 AKSVNPFRLIGVGLSVWTLATLCCGFSFNFWSIAVCRMLVGVGEASFISLAAPFIDDNAP 170

Query: 185 VAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQ 243
           V++KTAWL +FYMC+P+GYAIGY+YGG VG H+ WRY FW EAILM PFA+LGFVMKPLQ
Sbjct: 171 VSQKTAWLAIFYMCIPAGYAIGYIYGGLVGNHFGWRYGFWVEAILMSPFAILGFVMKPLQ 230

Query: 244 LKGFAPAESKKAFT 257
           LKGFAP +S+KA T
Sbjct: 231 LKGFAPTDSEKALT 244

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527981|ref|XP_003532584.1| PREDICTED: protein spinster homolog 1-like [Glycine max]

 Score =  366 bits (940), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 174/218 (79%), Positives = 194/218 (88%), Gaps = 2/218 (0%)

Query: 40  PKPSWFTPGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLN 99
           P  SWFTP RLL IFC INLLNY+DRG IASNGVNGS + C   GTC  GTGIQGDF+LN
Sbjct: 34  PSTSWFTPKRLLAIFCVINLLNYLDRGAIASNGVNGSQRTCEG-GTCKSGTGIQGDFNLN 92

Query: 100 NFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAI 159
           NF+DGVLSSAFMVGLLVASPIFASLA+SVNPFRLIGVGL+VWTLA + CGFSF+FW IA+
Sbjct: 93  NFEDGVLSSAFMVGLLVASPIFASLAKSVNPFRLIGVGLSVWTLATLCCGFSFNFWSIAV 152

Query: 160 CRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNW 218
           CRMLVGVGEASF+SLAAPFIDDNAPV++KTAWL +FYMC+P+GYAIGY+YGG VG H+ W
Sbjct: 153 CRMLVGVGEASFMSLAAPFIDDNAPVSQKTAWLAIFYMCIPAGYAIGYIYGGLVGNHFGW 212

Query: 219 RYAFWGEAILMFPFAVLGFVMKPLQLKGFAPAESKKAF 256
           RYAFW EAILMFPFA+LGF MKPLQLKGFAP +S+KA 
Sbjct: 213 RYAFWVEAILMFPFAILGFFMKPLQLKGFAPTDSEKAL 250

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485271|ref|XP_003612923.1| Spinster-like protein [Medicago truncatula] gi|355514258|gb|AES95881.1| Spinster-like protein [Medicago truncatula]

 Score =  364 bits (934), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 176/240 (73%), Positives = 198/240 (82%), Gaps = 2/240 (0%)

Query: 38  SPPKPSWFTPGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFD 97
            PP PSWFTP RLL+IFC INL+NYVDRG IASNGVNG+ + C+ +G CT GTGIQGDF+
Sbjct: 7   QPPNPSWFTPKRLLIIFCIINLINYVDRGAIASNGVNGTLETCTESGVCTAGTGIQGDFN 66

Query: 98  LNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMI 157
           L+NFQDGVLSSAFMVGLL+ASPIFASLA+S NPFRLIGVGL+VWT AV GCG SF FW I
Sbjct: 67  LSNFQDGVLSSAFMVGLLIASPIFASLAKSHNPFRLIGVGLSVWTFAVAGCGSSFDFWSI 126

Query: 158 AICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HY 216
           AICRMLVGVGEASFISLAAPFIDDNAPVA+KTAWL  FYMC+P+G A+GYVYGG VG  +
Sbjct: 127 AICRMLVGVGEASFISLAAPFIDDNAPVAQKTAWLATFYMCIPAGTALGYVYGGLVGSQF 186

Query: 217 NWRYAFWGEAILMFPFAVLGFVMKPLQLKGFAPAESKKAFTDIEIAFPEAQGDTHCSSEE 276
           NWR AFWGEAI M PF +LGF++KPLQLKGF P ESK+  T  E    E  GD    +E+
Sbjct: 187 NWRVAFWGEAIFMLPFPILGFLIKPLQLKGFGPMESKQTRTSNETNVSE-NGDDGILAED 245

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531403|ref|XP_003534267.1| PREDICTED: protein spinster homolog 1-like [Glycine max]

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 175/238 (73%), Positives = 196/238 (82%), Gaps = 1/238 (0%)

Query: 40  PKPSWFTPGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLN 99
           P PSWFTP RLL+IFC IN+LNYVDRG IASNGVNGS   C+ +G CT G+GIQGDF+LN
Sbjct: 9   PNPSWFTPKRLLMIFCLINMLNYVDRGAIASNGVNGSLATCTDSGICTGGSGIQGDFNLN 68

Query: 100 NFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAI 159
           NFQDGVLSSAFMVGLL+ASPIFASLA+S NPFRLIGVGL+VWTLA+ GCG SF FW IAI
Sbjct: 69  NFQDGVLSSAFMVGLLIASPIFASLAKSHNPFRLIGVGLSVWTLAIAGCGSSFDFWSIAI 128

Query: 160 CRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNW 218
           CRMLVGVGEASFISLAAPFIDDNAP A+KTAWL  FYMC+P+G A+GYVYGG VG  +NW
Sbjct: 129 CRMLVGVGEASFISLAAPFIDDNAPDAQKTAWLATFYMCIPAGTALGYVYGGIVGSQFNW 188

Query: 219 RYAFWGEAILMFPFAVLGFVMKPLQLKGFAPAESKKAFTDIEIAFPEAQGDTHCSSEE 276
           R AFW EAILM PF +LGFV+KPLQLKGFAP ESK+  T  E    E   D   + ++
Sbjct: 189 RVAFWVEAILMLPFPILGFVIKPLQLKGFAPLESKQTLTYTETNVSETGDDDTLAEDQ 246

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
TAIR|locus:2179401	484	AT5G64500 "AT5G64500" [Arabido	0.865	0.493	0.698	5.7e-91
TAIR|locus:504954889	492	AT5G65687 "AT5G65687" [Arabido	0.822	0.461	0.666	2.8e-82
TAIR|locus:2066045	510	AT2G22730 "AT2G22730" [Arabido	0.778	0.421	0.702	4.5e-82
FB|FBgn0086676	605	spin "spinster" [Drosophila me	0.471	0.214	0.338	2.1e-22
UNIPROTKB|F1NJ05	484	SPNS3 "Uncharacterized protein	0.474	0.270	0.355	5.7e-20
UNIPROTKB|H3BPQ9	274	SPNS1 "Protein spinster homolo	0.565	0.569	0.313	2.2e-18
UNIPROTKB|F1RFH5	528	SPNS1 "Uncharacterized protein	0.659	0.344	0.309	4.3e-18
UNIPROTKB|Q9H2V7	528	SPNS1 "Protein spinster homolo	0.565	0.295	0.313	1.5e-17
UNIPROTKB|H3BR82	538	SPNS1 "Protein spinster homolo	0.565	0.289	0.313	1.6e-17
UNIPROTKB|E2RBY9	561	SPNS1 "Uncharacterized protein	0.565	0.278	0.318	1.7e-17

TAIR|locus:2179401 AT5G64500 "AT5G64500" [Arabidopsis thaliana (taxid:3702)]

 Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
 Identities = 169/242 (69%), Positives = 200/242 (82%)

Query:    30 MVRNSLTLSPP--KPSWFTPGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCT 87
             M R+S ++  P  +PSWFTP +LL +FC +NL+NY+DRG IASNG+NGS  +C+++GTC+
Sbjct:    16 MERDSDSIKDPISEPSWFTPKKLLFVFCVVNLINYIDRGAIASNGINGSRGSCTSSGTCS 75

Query:    88 PGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVG 147
              G+GIQGDF+L+NF+DGVLSSAFMVGLLVASPIFASLA+SVNPFRLIGVGL++WTLAV+G
Sbjct:    76 SGSGIQGDFNLSNFEDGVLSSAFMVGLLVASPIFASLAKSVNPFRLIGVGLSIWTLAVIG 135

Query:   148 CGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGY 207
             CG SF FW I ICRM VGVGEASF+SLAAPFIDDNAP  +K+AWL VFYMC+P+GYA GY
Sbjct:   136 CGLSFDFWSITICRMFVGVGEASFVSLAAPFIDDNAPHDQKSAWLAVFYMCIPTGYAFGY 195

Query:   208 VYGGWVGHY-NWRYAFWGEAILMFPFAVLGFVMKPLQLKGFAPAESKKAFTDIEIAFPEA 266
             VYGG VG    WR AFWGEAILM PFAVLGFV+KPL LKGFAP ++ K  TD     P  
Sbjct:   196 VYGGVVGSVLPWRAAFWGEAILMLPFAVLGFVIKPLHLKGFAPDDTGKPRTDNLNVLPVG 255

Query:   267 QG 268
              G
Sbjct:   256 YG 257

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0046520 "sphingoid biosynthetic process" evidence=RCA

TAIR|locus:504954889 AT5G65687 "AT5G65687" [Arabidopsis thaliana (taxid:3702)]

 Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
 Identities = 154/231 (66%), Positives = 186/231 (80%)

Query:    38 SPP--KPSWFTPGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGD 95
             +PP  K  + TPGR + I C INL+NYVDRG IASNGVNGS K C A G C+ GTGIQG+
Sbjct:    15 APPATKKRFLTPGRFVTILCIINLINYVDRGVIASNGVNGSSKVCDAKGVCSAGTGIQGE 74

Query:    96 FDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFW 155
             F+L NF+DG+LSSAFMVGLLVASPIFA L++  NPF+LIGVGLTVWT+AV+GCGFS++FW
Sbjct:    75 FNLTNFEDGLLSSAFMVGLLVASPIFAGLSKRFNPFKLIGVGLTVWTIAVIGCGFSYNFW 134

Query:   156 MIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG- 214
             MIA+ RM VGVGEASFISLAAP+IDD+APVA+K  WLG+FYMC+P+G A+GYV+GG++G 
Sbjct:   135 MIAVFRMFVGVGEASFISLAAPYIDDSAPVARKNFWLGLFYMCIPAGVALGYVFGGYIGN 194

Query:   215 HYNWRYAFWGEAILMFPFAVLGFVMKP-LQLKGFAPAESKKAFTDIEIAFP 264
             H  WR+AF+ EAI M  F +L F +KP  QLKGFA  +SKK  T IE   P
Sbjct:   195 HLGWRWAFYIEAIAMAVFVILSFCIKPPQQLKGFADKDSKKPSTSIETVAP 245

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2066045 AT2G22730 "AT2G22730" [Arabidopsis thaliana (taxid:3702)]

 Score = 823 (294.8 bits), Expect = 4.5e-82, P = 4.5e-82
 Identities = 163/232 (70%), Positives = 190/232 (81%)

Query:    16 LAEPRTNPSVEDTGMVRNSLTLSPPKPSWFTPGRLLVIFCFINLLNYVDRGTIASNGVNG 75
             LAE  T  S+E   +V +S +LSP    W     LLVIFC INLLNY+DRG IASNGVNG
Sbjct:    28 LAELETVRSLE---IVESSSSLSPV---W-----LLVIFCIINLLNYMDRGAIASNGVNG 76

Query:    76 SPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIG 135
             S ++C+  G CT  TGIQG F+L+NF+DGVLSS+FMVGLL+ASPIFASLA+     RLIG
Sbjct:    77 STRSCNDKGKCTLATGIQGHFNLSNFEDGVLSSSFMVGLLIASPIFASLAK-----RLIG 131

Query:   136 VGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVF 195
             VGLTVWT+AV+GCG SF+FW I +CRM VGVGEASFISLAAPFIDDNAP  +K AWLG+F
Sbjct:   132 VGLTVWTIAVLGCGSSFAFWFIVLCRMFVGVGEASFISLAAPFIDDNAPQEQKAAWLGLF 191

Query:   196 YMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQLKG 246
             YMC+PSG A+GYVYGG+VG H++WRYAFWGEA+LM PFAVLGF+MKPLQLKG
Sbjct:   192 YMCIPSGVALGYVYGGYVGKHFSWRYAFWGEAVLMAPFAVLGFLMKPLQLKG 243

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0086676 spin "spinster" [Drosophila melanogaster (taxid:7227)]

 Score = 206 (77.6 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
 Identities = 46/136 (33%), Positives = 74/136 (54%)

Query:    90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLA-RSVNPFRLIGVGLTVWTLAVVGC 148
             T ++ DFD+ N   G+L + F++  +V +PIF  L  R   P+ ++ VG+ +W+   +  
Sbjct:   139 TDVRNDFDIGNDSAGLLQTVFVISYMVCAPIFGYLGDRYSRPW-IMAVGVGLWSTTTLLG 197

Query:   149 GFSFSF-WMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGY 207
              F   F W IA  R LVG+GEAS+ ++A   I D      ++  L +FY  +P G  +GY
Sbjct:   198 SFMKQFGWFIAF-RALVGIGEASYSTIAPTIISDLFVHDMRSKMLALFYFAIPVGSGLGY 256

Query:   208 VYGGWVGHY--NWRYA 221
             + G    H   +WR+A
Sbjct:   257 IVGSKTAHLANDWRWA 272

GO:0007422 "peripheral nervous system development" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0045924 "regulation of female receptivity" evidence=IMP

GO:0043067 "regulation of programmed cell death" evidence=IMP

GO:0035193 "larval central nervous system remodeling" evidence=IMP

GO:0045477 "regulation of nurse cell apoptotic process" evidence=IMP

GO:0012501 "programmed cell death" evidence=NAS

GO:0007619 "courtship behavior" evidence=NAS

GO:0008582 "regulation of synaptic growth at neuromuscular junction" evidence=IMP

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006897 "endocytosis" evidence=IMP

GO:0008333 "endosome to lysosome transport" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0048488 "synaptic vesicle endocytosis" evidence=IMP

GO:0045476 "nurse cell apoptotic process" evidence=IMP

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0007040 "lysosome organization" evidence=IMP

GO:0010001 "glial cell differentiation" evidence=IMP

GO:0008347 "glial cell migration" evidence=IMP

GO:0031982 "vesicle" evidence=IDA

GO:0090099 "negative regulation of decapentaplegic signaling pathway" evidence=IGI

UNIPROTKB|F1NJ05 SPNS3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 222 (83.2 bits), Expect = 5.7e-20, Sum P(2) = 5.7e-20
 Identities = 48/135 (35%), Positives = 75/135 (55%)

Query:    92 IQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGF- 150
             IQ  FDL++   G+L + F++  ++A+P F  L    N   +IG G+  W+   +G  F 
Sbjct:    76 IQKYFDLSDGAAGLLQTVFILCYMLAAPFFGYLGDRYNRKAIIGAGIFFWSAVTLGTSFI 135

Query:   151 SFSF-WMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVY 209
             S S+ W+  + R LVG+G AS+ ++A   I D     K+T  L VFY+C+P G  +GYV 
Sbjct:   136 SESYYWIFFLSRGLVGIGTASYSTVAPTIIADRFDEGKRTTMLSVFYICIPMGSGLGYVL 195

Query:   210 GGWVGHY--NWRYAF 222
                + H   +W +AF
Sbjct:   196 ASSMAHVTGDWHWAF 210

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|H3BPQ9 SPNS1 "Protein spinster homolog 1" [Homo sapiens (taxid:9606)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 57/182 (31%), Positives = 94/182 (51%)

Query:    46 TPGR---LLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQ 102
             +PGR   ++ + C+INLLNY+DR T+A  GV              P   I+  F++ +  
Sbjct:    39 SPGRSALIVAVLCYINLLNYMDRFTVA--GV-------------LPD--IEQFFNIGDSS 81

Query:   103 DGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGF--SFSFWMIAIC 160
              G++ + F+   +V +P+F  L    N   L+  G+  W+L  +G  F     FW++ + 
Sbjct:    82 SGLIQTVFISSYMVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLGSSFIPGEHFWLLLLT 141

Query:   161 RMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWV----GHY 216
             R LVGVGEAS+ ++A   I D     +++  L +FY  +P G  +GY+ G  V    G +
Sbjct:   142 RGLVGVGEASYSTIAPTLIADLFVADQRSRMLSIFYFAIPVGSGLGYIAGSKVKDMAGDW 201

Query:   217 NW 218
             +W
Sbjct:   202 HW 203

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|F1RFH5 SPNS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 227 (85.0 bits), Expect = 4.3e-18, P = 4.3e-18
 Identities = 66/213 (30%), Positives = 105/213 (49%)

Query:    16 LAEPRTNPSVEDTGMV-RNSLTLSPPKPSWFTPGR---LLVIFCFINLLNYVDRGTIASN 71
             L  P  NP  ED  ++ R  L     + +  + GR   ++ + C+INLLNY+DR T+A  
Sbjct:    27 LPGPMGNPKSEDPEVLDREGLQ----RITGLSSGRSALIVAVLCYINLLNYMDRFTVA-- 80

Query:    72 GVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPF 131
             GV              P   I+  FD+ +   G++ + F+   +V +P+F  L    N  
Sbjct:    81 GV-------------LPD--IEQFFDIGDGSSGLIQTVFISSYMVLAPVFGYLGDRYNRK 125

Query:   132 RLIGVGLTVWTLAVVGCGF--SFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKT 189
              L+  G+  W+L  +G  F     FW++ + R LVGVGEAS+ ++A   I D     +++
Sbjct:   126 YLMCGGIAFWSLVTLGSSFIPKERFWLLLLTRGLVGVGEASYSTIAPTLIADLFVADQRS 185

Query:   190 AWLGVFYMCLPSGYAIGYVYGGWV----GHYNW 218
               L VFY  +P G  +GY+ G  V    G ++W
Sbjct:   186 RMLSVFYFAIPVGSGLGYIAGSKVKDVAGDWHW 218

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9H2V7 SPNS1 "Protein spinster homolog 1" [Homo sapiens (taxid:9606)]

 Score = 222 (83.2 bits), Expect = 1.5e-17, P = 1.5e-17
 Identities = 57/182 (31%), Positives = 94/182 (51%)

Query:    46 TPGR---LLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQ 102
             +PGR   ++ + C+INLLNY+DR T+A  GV              P   I+  F++ +  
Sbjct:    54 SPGRSALIVAVLCYINLLNYMDRFTVA--GV-------------LPD--IEQFFNIGDSS 96

Query:   103 DGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGF--SFSFWMIAIC 160
              G++ + F+   +V +P+F  L    N   L+  G+  W+L  +G  F     FW++ + 
Sbjct:    97 SGLIQTVFISSYMVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLGSSFIPGEHFWLLLLT 156

Query:   161 RMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWV----GHY 216
             R LVGVGEAS+ ++A   I D     +++  L +FY  +P G  +GY+ G  V    G +
Sbjct:   157 RGLVGVGEASYSTIAPTLIADLFVADQRSRMLSIFYFAIPVGSGLGYIAGSKVKDMAGDW 216

Query:   217 NW 218
             +W
Sbjct:   217 HW 218

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|H3BR82 SPNS1 "Protein spinster homolog 1" [Homo sapiens (taxid:9606)]

 Score = 222 (83.2 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 57/182 (31%), Positives = 94/182 (51%)

Query:    46 TPGR---LLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQ 102
             +PGR   ++ + C+INLLNY+DR T+A  GV              P   I+  F++ +  
Sbjct:    43 SPGRSALIVAVLCYINLLNYMDRFTVA--GV-------------LPD--IEQFFNIGDSS 85

Query:   103 DGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGF--SFSFWMIAIC 160
              G++ + F+   +V +P+F  L    N   L+  G+  W+L  +G  F     FW++ + 
Sbjct:    86 SGLIQTVFISSYMVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLGSSFIPGEHFWLLLLT 145

Query:   161 RMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWV----GHY 216
             R LVGVGEAS+ ++A   I D     +++  L +FY  +P G  +GY+ G  V    G +
Sbjct:   146 RGLVGVGEASYSTIAPTLIADLFVADQRSRMLSIFYFAIPVGSGLGYIAGSKVKDMAGDW 205

Query:   217 NW 218
             +W
Sbjct:   206 HW 207

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|E2RBY9 SPNS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 222 (83.2 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 58/182 (31%), Positives = 93/182 (51%)

Query:    46 TPGR---LLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQ 102
             +PG    ++ + C+INLLNY+DR T+A  GV              P   I+  FD+ +  
Sbjct:    87 SPGHSALIVAVLCYINLLNYMDRFTVA--GV-------------LPD--IEQFFDIGDSS 129

Query:   103 DGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGF--SFSFWMIAIC 160
              G++ + F+   +V +P+F  L    N   L+  G+  W+L  +G  F     FW++ + 
Sbjct:   130 SGLIQTVFISSYMVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLGSSFIPRERFWLLLLT 189

Query:   161 RMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWV----GHY 216
             R LVGVGEAS+ ++A   I D     +++  L VFY  +P G  +GY+ G  V    G +
Sbjct:   190 RGLVGVGEASYSTIAPTLIADLFVADQRSRMLSVFYFAIPVGSGLGYIAGSKVKDVAGDW 249

Query:   217 NW 218
             +W
Sbjct:   250 HW 251

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	276
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-20
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-17
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	3e-11
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	5e-09
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	9e-09
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	7e-08
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	2e-07
COG2271	448	COG2271, UhpC, Sugar phosphate permease [Carbohydr	3e-06
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	6e-06
PRK10091	382	PRK10091, PRK10091, MFS transport protein AraJ; Pr	8e-06
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	1e-05
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	1e-04
COG0477	338	COG0477, ProP, Permeases of the major facilitator	2e-04
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	5e-04
TIGR00710	385	TIGR00710, efflux_Bcr_CflA, drug resistance transp	0.001
PRK03545	390	PRK03545, PRK03545, putative arabinose transporter	0.002
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	0.003
pfam03137	582	pfam03137, OATP, Organic Anion Transporter Polypep	0.003

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 89.7 bits (223), Expect = 1e-20
 Identities = 46/193 (23%), Positives = 83/193 (43%), Gaps = 18/193 (9%)

Query: 51  LVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAF 110
           L++      L+ +DRG ++                      +  D  L+  Q G++ SAF
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPL-----------------LAEDLGLSASQAGLIVSAF 43

Query: 111 MVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEAS 170
            +G  + S +   L+      R++ +GL ++ L  +   F+ S W++ + R L+G+G  +
Sbjct: 44  SLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGA 103

Query: 171 FISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILM 229
               AA  I +  P  ++   LG+F      G  +G + GG +     WR+ F   AIL 
Sbjct: 104 LYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILG 163

Query: 230 FPFAVLGFVMKPL 242
              A+L   +  L
Sbjct: 164 LLLALLLLFLLRL 176

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 80.9 bits (200), Expect = 1e-17
 Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 1/152 (0%)

Query: 92  IQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFS 151
           +  D  ++  + G+L +AF +G  +A P+   L+      R++ +GL ++ L ++   F+
Sbjct: 23  LAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA 82

Query: 152 FSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGG 211
            S W++ + R+L G+G  +    AA  I D  P  ++   LG+       G A+G + GG
Sbjct: 83  SSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGG 142

Query: 212 W-VGHYNWRYAFWGEAILMFPFAVLGFVMKPL 242
                + WR AF   AIL    AVL  ++ P 
Sbjct: 143 LLASLFGWRAAFLILAILALLAAVLAALLLPR 174

Length = 346

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 59.6 bits (145), Expect = 3e-11
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 2/140 (1%)

Query: 104 GVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRML 163
           G+L + + +G L+ SP+   L        ++ VGL ++ L+      S +  ++ I R L
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60

Query: 164 VGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGHY-NWRYAF 222
            G G A  +   A  I D  P  ++   LG+    +  G  +G   GG +  +  WR  F
Sbjct: 61  QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPF 120

Query: 223 WGEAILM-FPFAVLGFVMKP 241
              AIL    F +L F++  
Sbjct: 121 LFLAILALAAFILLAFLLPE 140

Length = 141

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 56.1 bits (136), Expect = 5e-09
 Identities = 37/167 (22%), Positives = 73/167 (43%), Gaps = 2/167 (1%)

Query: 92  IQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFS 151
           I  D  ++    G L +A+ +G+ + +P+ A L   +   RL+   L ++ ++ +    +
Sbjct: 39  IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALA 98

Query: 152 FSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGG 211
            SF ++ + R L G+    F S+AA       P  K+   L + +  L     +G   G 
Sbjct: 99  PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGT 158

Query: 212 WVGHY-NWRYAFWGEAIL-MFPFAVLGFVMKPLQLKGFAPAESKKAF 256
           ++G    WR  F   A+L +    +L  ++ P ++ G  P   +   
Sbjct: 159 FLGQLFGWRATFLAIAVLALLALLLLWKLLPPSEISGSLPGPLRTLL 205

Length = 394

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 55.5 bits (134), Expect = 9e-09
 Identities = 37/164 (22%), Positives = 74/164 (45%), Gaps = 5/164 (3%)

Query: 92  IQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFS 151
           I GD   +  Q   + +++M+   ++ P+   LA+     RL  +    +TL  + CG +
Sbjct: 28  IAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA 87

Query: 152 FSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGG 211
            +  ++ I R++ G G    I L+   + +  P  K+   + ++ + +    A+G   GG
Sbjct: 88  PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGG 147

Query: 212 WV-GHYNWRYAFWGEAILMFPFAVLGFVMKPLQLKGFAPAESKK 254
           W+  +Y+WR+ F        P  ++  V+    L    PA S+ 
Sbjct: 148 WIIENYHWRWIFLIN----VPIGIIVVVVAFFILPRDKPAASEN 187

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 30/151 (19%), Positives = 62/151 (41%), Gaps = 2/151 (1%)

Query: 92  IQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFR-LIGVGLTVWTLAVVGCGF 150
           +Q    L+  + G+L S F +G ++ + +   L+  +   R L+ +GL +  L ++    
Sbjct: 202 LQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLAL 261

Query: 151 SFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYG 210
           + S  ++ +  +L+G G             + AP   +    G+F      G A+G +  
Sbjct: 262 APSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLA 321

Query: 211 GWV-GHYNWRYAFWGEAILMFPFAVLGFVMK 240
           G +     +   F   A L    A+L  ++ 
Sbjct: 322 GLLLDTGGYGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 3/153 (1%)

Query: 91  GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGF 150
            I  ++ L+  Q G L SA ++G+   +  F  LA  +   R++   + ++++  + C  
Sbjct: 42  AISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCAL 101

Query: 151 SFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYG 210
           + +   + I R L G+G    +      + + AP   +   +G+ +   P G A+G    
Sbjct: 102 ATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLA 161

Query: 211 GW-VGHYNWRYAFWGEAILMFPFAVLGFVMKPL 242
           GW +  + WR  F+   I   P  +L  +M+ L
Sbjct: 162 GWLIPVFGWRSLFYVGGI--APLLLLLLLMRFL 192

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 13/157 (8%)

Query: 91  GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGF 150
            +  D  L+  Q G+L SAF +   V+  +   L+   NP   +  GL +  +  +  GF
Sbjct: 54  ALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGF 113

Query: 151 SFSFWMIAICRMLVGV-----GEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAI 205
           S S ++ A+  +L G            ++   F        ++  W  ++      G A+
Sbjct: 114 SPSLFLFAVLWVLNGWFQGMGWPPCARTITHWF-----SRKERGTWWSIWNTSHNIGGAL 168

Query: 206 --GYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVM 239
                   +   H  WR AF+   I+    A++   +
Sbjct: 169 APLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFL 205

Length = 448

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 37/159 (23%), Positives = 69/159 (43%), Gaps = 13/159 (8%)

Query: 87  TPGTGIQGDFDL---NNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTL 143
           T  + I  ++DL   + ++  +  S F VG+L+ S +F  L+      R   + L+    
Sbjct: 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFG--RKKVLLLSTLVT 167

Query: 144 AVVG--CGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPS 201
           AV G    FS ++ +  + R+LVG+G       A     +  P  K+ A +G        
Sbjct: 168 AVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPK-KQRAIVGTLIQ---V 223

Query: 202 GYAIGYVYGGWVGHYN--WRYAFWGEAILMFPFAVLGFV 238
            +++G V    V ++   WR+     ++  F F +L + 
Sbjct: 224 FFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWF 262

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|182234 PRK10091, PRK10091, MFS transport protein AraJ; Provisional

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 12/136 (8%)

Query: 104 GVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVG---CGFSFSFWMIAIC 160
           G + S + +G++V +PI A  +     + L  + L +  L V+G      S S+ M+AI 
Sbjct: 41  GHMISYYALGVVVGAPIIALFSSR---YSLKHILLFLVALCVIGNAMFTLSSSYLMLAIG 97

Query: 161 RMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGH-YNWR 219
           R++ G    +F  + A  +       K TA +      +     +G   G ++   ++WR
Sbjct: 98  RLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWR 157

Query: 220 YAF-----WGEAILMF 230
           Y F     +  A+L  
Sbjct: 158 YTFLLIAVFNIAVLAS 173

Length = 382

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 10/152 (6%)

Query: 94  GDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFS-- 151
           G    +    G++ S F VG L+ S     L       + + +G  ++ +  +  GF+  
Sbjct: 39  GACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKG 98

Query: 152 FSFWMIAICRMLVGVGEASFISLAAP-FIDDNAPVAKKTAWLGVFY-----MCLPSGYAI 205
            SF+M+ + R++VG+G    IS+  P +I + AP   + A LG  Y       +     I
Sbjct: 99  KSFYMLIVGRVIVGLG-VGGISVLVPMYISEIAPKKLRGA-LGSLYQLGITFGILVAAII 156

Query: 206 GYVYGGWVGHYNWRYAFWGEAILMFPFAVLGF 237
           G     +     WR     + +      +   
Sbjct: 157 GLGLNKYSNSDGWRIPLGLQFVPAILLLIGLL 188

Length = 449

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 34/165 (20%), Positives = 69/165 (41%), Gaps = 6/165 (3%)

Query: 92  IQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFS 151
           +  +  L+    G+L S+F +   ++  +  S++   NP   + +GL +  +  +  GFS
Sbjct: 21  LVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS 80

Query: 152 FSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMC---LPSGYAIGYV 208
            S W++A    L G+ +          +      +++  W+  F+ C   +  G     V
Sbjct: 81  TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVS-FWNCSHNVGGGLLPPLV 139

Query: 209 YGGWVGHYNWRYAFWGEAILMFPFAVLGFVM--KPLQLKGFAPAE 251
             G    Y+W + F    I+    +++ F++     Q  G  PAE
Sbjct: 140 LFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAE 184

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 33/168 (19%), Positives = 62/168 (36%), Gaps = 7/168 (4%)

Query: 96  FDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGF--SFS 153
                   G+L SAF +G  + S +   L       +++ +GL ++ L  +      +  
Sbjct: 34  LSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVG 93

Query: 154 FWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCL--PSGYAIGYVYGG 211
             ++ I R+L G+G    + +A+  + +  P A +               G A+G +  G
Sbjct: 94  LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAG 153

Query: 212 WVGHY---NWRYAFWGEAILMFPFAVLGFVMKPLQLKGFAPAESKKAF 256
            +       WR AF   A+L     +L  ++  L      P     A 
Sbjct: 154 LLLGALLWGWRAAFLLAALLGLLLLILVLLLDLLLAAPRLPLAVGLAL 201

Length = 338

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 3/118 (2%)

Query: 92  IQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFR---LIGVGLTVWTLAVVGC 148
            Q    L+    G+L     +   +   +   L+  +   R   L  + L +  L +   
Sbjct: 228 YQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALL 287

Query: 149 GFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIG 206
             + S   + +  +L+G G           + D AP  ++    G++      G A+G
Sbjct: 288 SLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG 345

Length = 346

>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 23/154 (14%), Positives = 60/154 (38%), Gaps = 7/154 (4%)

Query: 92  IQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFS 151
           I  D         +  + +++G      ++  L+       ++ +GL ++ L+ +G   S
Sbjct: 31  IAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS 90

Query: 152 FSFWMIAICRMLVGVGEASFISLAAPFIDDNAP---VAKKTAWLGVFYMCLPSGYAIGYV 208
            +   + + R +   G ++   ++   + D  P   +++  + L       P   A+  +
Sbjct: 91  NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAP---AVAPL 147

Query: 209 YGGWV-GHYNWRYAFWGEAILMFPFAVLGFVMKP 241
            GG++    +W   F   ++     + L F + P
Sbjct: 148 LGGYILVWLSWHAIFAFLSLAGILLSALIFFILP 181

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385

>gnl|CDD|179591 PRK03545, PRK03545, putative arabinose transporter; Provisional

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 12/104 (11%)

Query: 133 LIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWL 192
           LIG+   ++  + V    +++F ++ I R+ +    A F S+ A      AP  KK   L
Sbjct: 77  LIGL-FVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQAL 135

Query: 193 GVFY------MCLPSGYAIGYVYGGWVGHYNWRYAFWGEAILMF 230
            +        M L  G  +G V G ++G   WR  F        
Sbjct: 136 SLLATGTALAMVL--GLPLGRVIGQYLG---WRTTFLAIGGGAL 174

Length = 390

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 27/142 (19%), Positives = 55/142 (38%), Gaps = 13/142 (9%)

Query: 90  TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCG 149
             + G+F L       L SA ++     + +F            +   + +++   + CG
Sbjct: 36  AEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACG 95

Query: 150 FSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVY 209
           F+  +  + I R+++G+G       +A ++ ++ P   +    G+      SGYA+G V 
Sbjct: 96  FAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLI----SGYAVGAVV 151

Query: 210 --------GGWVGHYNWRYAFW 223
                       G   WR  F+
Sbjct: 152 AAQVYSLVVPVWGD-GWRALFF 172

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|217384 pfam03137, OATP, Organic Anion Transporter Polypeptide (OATP) family

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 16/63 (25%), Positives = 30/63 (47%)

Query: 149 GFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYV 208
             S  + ++ + ++L G+G     +L   +IDDN        +LG+ +     G AIG++
Sbjct: 134 STSLMWLLLFVGQLLRGIGATPIFTLGISYIDDNVKSKNSPLYLGILFTMAMFGPAIGFL 193

Query: 209 YGG 211
            G 
Sbjct: 194 LGS 196

This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules). Thus, Tamai et al. initiated the current scheme of using digits for rat OATPs and letters for human ones. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the Swiss-Prot database) as belonging to the SLC21 family of transporters. Length = 582

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	276
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.93
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.93
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.93
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.92
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.91
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.91
PRK03545	390	putative arabinose transporter; Provisional	99.91
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.9
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.9
PRK11663	434	regulatory protein UhpC; Provisional	99.9
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.9
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.9
TIGR00891	405	2A0112 putative sialic acid transporter.	99.89
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.89
PRK10091	382	MFS transport protein AraJ; Provisional	99.89
TIGR00893	399	2A0114 d-galactonate transporter.	99.89
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.89
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.89
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.88
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.88
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.88
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.88
PRK12307	426	putative sialic acid transporter; Provisional	99.88
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.87
PRK03699	394	putative transporter; Provisional	99.87
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.87
PRK10642	490	proline/glycine betaine transporter; Provisional	99.87
PRK09705	393	cynX putative cyanate transporter; Provisional	99.87
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.87
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.87
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.87
TIGR00895	398	2A0115 benzoate transport.	99.87
PLN00028	476	nitrate transmembrane transporter; Provisional	99.87
PRK03893	496	putative sialic acid transporter; Provisional	99.87
TIGR00898	505	2A0119 cation transport protein.	99.87
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.86
KOG2533	495	consensus Permease of the major facilitator superf	99.86
PRK10504	471	putative transporter; Provisional	99.86
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.86
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.85
TIGR00900	365	2A0121 H+ Antiporter protein.	99.85
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.85
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.85
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.85
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.85
PRK09952	438	shikimate transporter; Provisional	99.85
PRK11043	401	putative transporter; Provisional	99.85
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.84
KOG2532	466	consensus Permease of the major facilitator superf	99.84
KOG0254	513	consensus Predicted transporter (major facilitator	99.84
PRK05122	399	major facilitator superfamily transporter; Provisi	99.84
PRK10054	395	putative transporter; Provisional	99.84
PRK15075	434	citrate-proton symporter; Provisional	99.84
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.83
PRK12382	392	putative transporter; Provisional	99.83
PRK10133	438	L-fucose transporter; Provisional	99.83
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.83
TIGR00805	633	oat sodium-independent organic anion transporter.	99.83
PRK09874	408	drug efflux system protein MdtG; Provisional	99.82
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.82
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.82
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.81
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.81
PRK03633	381	putative MFS family transporter protein; Provision	99.8
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.8
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.8
PTZ00207	591	hypothetical protein; Provisional	99.8
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.79
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.78
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.78
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.78
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.78
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.77
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.75
PRK10489	417	enterobactin exporter EntS; Provisional	99.75
KOG0569	485	consensus Permease of the major facilitator superf	99.75
KOG2615	451	consensus Permease of the major facilitator superf	99.75
PRK15011	393	sugar efflux transporter B; Provisional	99.74
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.74
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.74
TIGR00901	356	2A0125 AmpG-related permease.	99.71
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.71
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.71
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.7
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.7
PRK10642	490	proline/glycine betaine transporter; Provisional	99.69
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.68
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.68
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.68
PRK11010	491	ampG muropeptide transporter; Validated	99.67
PRK15011	393	sugar efflux transporter B; Provisional	99.67
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.67
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.67
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.67
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.66
PRK05122	399	major facilitator superfamily transporter; Provisi	99.65
PRK11902	402	ampG muropeptide transporter; Reviewed	99.65
PRK09528	420	lacY galactoside permease; Reviewed	99.65
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.65
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.64
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.64
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.64
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.62
PRK10489	417	enterobactin exporter EntS; Provisional	99.62
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.61
PRK09528	420	lacY galactoside permease; Reviewed	99.61
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.61
PRK12382	392	putative transporter; Provisional	99.61
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.6
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.6
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.6
PRK03893	496	putative sialic acid transporter; Provisional	99.59
PRK03699	394	putative transporter; Provisional	99.59
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.59
TIGR00893	399	2A0114 d-galactonate transporter.	99.59
PRK09874	408	drug efflux system protein MdtG; Provisional	99.58
PRK03545	390	putative arabinose transporter; Provisional	99.56
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.56
PRK03633	381	putative MFS family transporter protein; Provision	99.56
PRK09705	393	cynX putative cyanate transporter; Provisional	99.55
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.55
TIGR00891	405	2A0112 putative sialic acid transporter.	99.55
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.54
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.53
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.53
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.52
PRK11663	434	regulatory protein UhpC; Provisional	99.5
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.5
TIGR00895	398	2A0115 benzoate transport.	99.49
PLN00028	476	nitrate transmembrane transporter; Provisional	99.49
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.49
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.49
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.48
PRK09952	438	shikimate transporter; Provisional	99.48
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.47
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.47
PRK11010	491	ampG muropeptide transporter; Validated	99.45
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.44
PRK15075	434	citrate-proton symporter; Provisional	99.44
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.44
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.44
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.43
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.43
PRK10504	471	putative transporter; Provisional	99.42
TIGR00898	505	2A0119 cation transport protein.	99.42
PRK12307	426	putative sialic acid transporter; Provisional	99.41
TIGR00900	365	2A0121 H+ Antiporter protein.	99.4
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.4
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.4
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.4
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.4
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.39
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.38
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.37
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.36
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.36
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.36
KOG0569	485	consensus Permease of the major facilitator superf	99.36
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.35
PRK10054	395	putative transporter; Provisional	99.35
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.33
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.33
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.33
PRK10091	382	MFS transport protein AraJ; Provisional	99.32
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.32
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.31
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.3
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.3
PRK11902	402	ampG muropeptide transporter; Reviewed	99.3
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.3
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.29
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.28
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.28
PRK09848	448	glucuronide transporter; Provisional	99.26
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.26
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.25
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.25
KOG2563	480	consensus Permease of the major facilitator superf	99.25
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.25
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.24
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.23
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.23
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.22
PRK09669	444	putative symporter YagG; Provisional	99.21
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.19
PRK10133	438	L-fucose transporter; Provisional	99.18
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.16
TIGR00901	356	2A0125 AmpG-related permease.	99.15
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.14
PRK10429	473	melibiose:sodium symporter; Provisional	99.14
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.13
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.12
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.11
PRK11043	401	putative transporter; Provisional	99.1
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.09
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.08
KOG3626	735	consensus Organic anion transporter [Secondary met	99.08
PRK10429	473	melibiose:sodium symporter; Provisional	99.07
PF13347	428	MFS_2: MFS/sugar transport protein	99.07
PRK09669	444	putative symporter YagG; Provisional	99.07
PF13347	428	MFS_2: MFS/sugar transport protein	99.06
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.06
COG0477	338	ProP Permeases of the major facilitator superfamil	99.04
KOG3762	618	consensus Predicted transporter [General function	99.03
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.0
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.99
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.93
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.9
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.89
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.88
PRK11462	460	putative transporter; Provisional	98.88
KOG2532	466	consensus Permease of the major facilitator superf	98.88
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.87
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.85
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.84
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.8
COG2211	467	MelB Na+/melibiose symporter and related transport	98.8
PRK11462	460	putative transporter; Provisional	98.8
PRK09848	448	glucuronide transporter; Provisional	98.79
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.79
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.78
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.78
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.77
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.73
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.73
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.72
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.72
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.7
KOG0254	513	consensus Predicted transporter (major facilitator	98.69
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.68
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.66
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.65
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.64
COG2211	467	MelB Na+/melibiose symporter and related transport	98.5
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.47
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.43
KOG2533	495	consensus Permease of the major facilitator superf	98.43
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.41
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.32
KOG0637	498	consensus Sucrose transporter and related proteins	98.32
KOG2615	451	consensus Permease of the major facilitator superf	98.3
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	98.17
PTZ00207	591	hypothetical protein; Provisional	98.15
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.13
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.1
PF12832	77	MFS_1_like: MFS_1 like family	98.04
PRK03612	521	spermidine synthase; Provisional	97.98
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.84
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.82
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	97.81
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.75
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.73
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.73
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.42
KOG2563	480	consensus Permease of the major facilitator superf	97.34
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.32
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.2
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.1
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.01
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.89
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.85
TIGR00805	633	oat sodium-independent organic anion transporter.	96.76
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	96.75
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	96.72
COG3202	509	ATP/ADP translocase [Energy production and convers	96.64
KOG3762	618	consensus Predicted transporter [General function	96.49
KOG3626	735	consensus Organic anion transporter [Secondary met	96.39
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.1
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	94.96
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	94.92
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	94.77
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	94.75
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	94.7
KOG3097	390	consensus Predicted membrane protein [Function unk	94.7
KOG0637	498	consensus Sucrose transporter and related proteins	94.15
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	93.85
KOG3810	433	consensus Micronutrient transporters (folate trans	93.67
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	93.48
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	93.08
KOG3880	409	consensus Predicted small molecule transporter inv	90.79
COG4262	508	Predicted spermidine synthase with an N-terminal m	90.27
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	89.78
KOG3810	433	consensus Micronutrient transporters (folate trans	89.44
KOG3880	409	consensus Predicted small molecule transporter inv	89.14
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	88.72
PRK10263	1355	DNA translocase FtsK; Provisional	88.23
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	84.49
PF12805	284	FUSC-like: FUSC-like inner membrane protein yccS	84.26
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	80.63

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.93  E-value=8.4e-25  Score=191.57  Aligned_cols=183  Identities=17%  Similarity=0.292  Sum_probs=166.1

Q ss_pred             ChhhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhh
Q 023846           46 TPGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLA  125 (276)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~  125 (276)
                      .+|+.+..+++.++..++|+..++...                 |.+++|+|++..+.+++.+.+.+++.+++++.|++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~-----------------~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~   67 (412)
T TIGR02332         5 LFRRLIIFLFILFIFSFLDRINIGFAG-----------------LTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIML   67 (412)
T ss_pred             ehhHHHHHHHHHHHHHHhhhhhHHHHH-----------------HhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            356778888888999999999988743                 689999999999999999999999999999999999


Q ss_pred             hccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhH
Q 023846          126 RSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAI  205 (276)
Q Consensus       126 d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~  205 (276)
                      ||+|||+++..+.++..++.++++++++++.+++.|++.|++.+...+....++.|++|+++|++++++++.+..+|.++
T Consensus        68 dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~  147 (412)
T TIGR02332        68 AIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMAL  147 (412)
T ss_pred             HHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhc-------ccchhHHHHHhHHHHHHHHHHHHhhcccccC
Q 023846          206 GYVYGGWVG-------HYNWRYAFWGEAILMFPFAVLGFVMKPLQLK  245 (276)
Q Consensus       206 g~~~~~~l~-------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (276)
                      ++.+++++.       ..|||+.|++.+++.++..++.+++.||+++
T Consensus       148 ~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       148 GLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             HHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            999998875       2599999999988887776666666677654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.93  E-value=1.8e-24  Score=183.11  Aligned_cols=154  Identities=23%  Similarity=0.379  Sum_probs=150.4

Q ss_pred             CccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 023846           88 PGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVG  167 (276)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  167 (276)
                      .+|.+.+|+|++..+.|+..+.|.+++.+++++...+.||+.||++++..+.+++++.+++++++||+.++++|++.|+.
T Consensus        35 LLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a  114 (394)
T COG2814          35 LLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLA  114 (394)
T ss_pred             chHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhcc
Q 023846          168 EASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKP  241 (276)
Q Consensus       168 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~  241 (276)
                      .|.+++...++..+..|+++|++++++..++..++.++|.+++.++. .+|||++|++.+.++++.++..+...|
T Consensus       115 ~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         115 HGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999 999999999999999999888888888

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.93  E-value=4.8e-26  Score=192.53  Aligned_cols=188  Identities=40%  Similarity=0.740  Sum_probs=175.2

Q ss_pred             CCCCChhhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHHhHH
Q 023846           42 PSWFTPGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIF  121 (276)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  121 (276)
                      ...+..++.+.++++..++.++|++.+...+                 +.+++.||++++..|++.+.+.+.+.+++|++
T Consensus        26 ~~~~~~~~~l~il~~vnlmny~Dr~~iagv~-----------------~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~   88 (493)
T KOG1330|consen   26 LSMKSPTLTLVILCLVNLMNYADRYTIAGVL-----------------KEVQTYFNISDSELGLLQTVFIVVFMIASPLF   88 (493)
T ss_pred             cccccchHHHHHHHHHHHHHHhhhhhhhhhh-----------------HHHHHhcCCCchhccchhHHHHHHHHHHHHHH
Confidence            5566677788999999999999999987633                 68999999999999999999999999999999


Q ss_pred             HHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhh
Q 023846          122 ASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPS  201 (276)
Q Consensus       122 g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~  201 (276)
                      |+++||+.||+++.+|..++.++.+.++++..+|++.++|.+.|+|.+...++++++++|.+|..+|++++++++.+..+
T Consensus        89 gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipv  168 (493)
T KOG1330|consen   89 GYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPV  168 (493)
T ss_pred             HHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHhhc--ccchhHHHHHhHHHHHHHHHHHHhhcccccCC
Q 023846          202 GYAIGYVYGGWVG--HYNWRYAFWGEAILMFPFAVLGFVMKPLQLKG  246 (276)
Q Consensus       202 g~~~g~~~~~~l~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (276)
                      |..+|.+++..+.  ...|||.|+..+++.+++.++.+++.+|+++.
T Consensus       169 GsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rg  215 (493)
T KOG1330|consen  169 GSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERG  215 (493)
T ss_pred             ccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccc
Confidence            9999999999998  44499999999999999999998887776653

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.92  E-value=3.8e-24  Score=191.64  Aligned_cols=181  Identities=18%  Similarity=0.190  Sum_probs=163.8

Q ss_pred             hhhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhh
Q 023846           47 PGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLAR  126 (276)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d  126 (276)
                      .+..+..+++..++...|.+.++..                 +|.+.+++|.+..+.+|+.+.|.+++.++.++.|+++|
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a-----------------~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D   66 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVA-----------------APTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGD   66 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788889999999999988873                 48999999999999999999999999999999999999


Q ss_pred             ccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcC-cchhhhHHHHHHHHHhhhhhhH
Q 023846          127 SVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNA-PVAKKTAWLGVFYMCLPSGYAI  205 (276)
Q Consensus       127 ~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~  205 (276)
                      |+|||+++.++.++++++.+++++++|++.++++|+++|+|.+...+.....+.+.+ |+++|++++|++.....+|..+
T Consensus        67 ~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~  146 (495)
T PRK14995         67 RIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAF  146 (495)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998888888887765 6799999999999999999999


Q ss_pred             HHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhccccc
Q 023846          206 GYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQL  244 (276)
Q Consensus       206 g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (276)
                      ||.+++++. +.+|||.|++...+.++..++.+++.|+++
T Consensus       147 gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~  186 (495)
T PRK14995        147 GPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQA  186 (495)
T ss_pred             HHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999 889999999988877777666666666643

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.91  E-value=1.3e-24  Score=182.25  Aligned_cols=183  Identities=19%  Similarity=0.238  Sum_probs=170.5

Q ss_pred             hhhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhh
Q 023846           47 PGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLAR  126 (276)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d  126 (276)
                      +++++..+++.+...++.+-.++..                 +|.+.++.++|.+|.|.+.+.+.+.+.++..+.|.++|
T Consensus        27 r~qif~~~fiGYa~fYl~RknF~~a-----------------~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sD   89 (448)
T COG2271          27 RIQIFLSIFIGYAAFYLTRKNFNLA-----------------MPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSD   89 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhc-----------------cHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            3456788889999999999998874                 48999999999999999999999999999999999999


Q ss_pred             ccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHH
Q 023846          127 SVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIG  206 (276)
Q Consensus       127 ~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  206 (276)
                      |.++|..+..++++.++..++++++++++.+.++.++.|+.+|..+|.+...++.|+++++||+..++++++.++|+.+.
T Consensus        90 r~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~  169 (448)
T COG2271          90 RSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALA  169 (448)
T ss_pred             cCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH--Hhhc-ccchhHHHHHhHHHHHHHHHHHHhhcccccCC
Q 023846          207 YVYG--GWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQLKG  246 (276)
Q Consensus       207 ~~~~--~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (276)
                      |++.  +++. +.+||..|++.++++++..++.++..+++|..
T Consensus       170 ~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs  212 (448)
T COG2271         170 PLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQS  212 (448)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence            9888  7777 88999999999999999988888876666544

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.91  E-value=3.9e-24  Score=196.71  Aligned_cols=185  Identities=15%  Similarity=0.159  Sum_probs=158.2

Q ss_pred             CChhhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHh
Q 023846           45 FTPGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASL  124 (276)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l  124 (276)
                      +..|+++++++++.+...++...++.                 ++|.+.+++|++..+.+++.+++.++.+++++++|++
T Consensus       163 ~~~~~l~~i~~l~~~~~g~d~~~is~-----------------ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~L  225 (742)
T TIGR01299       163 RFQWALFFVLGLALMADGVEVFVVGF-----------------VLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGL  225 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455566666777777777666654                 3478899999999999999999999999999999999


Q ss_pred             hhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhh
Q 023846          125 ARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYA  204 (276)
Q Consensus       125 ~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~  204 (276)
                      +||+|||+++++++++.+++.++++++++++.++++|++.|++.++..+...+++.|++|+++|++.++++.++..+|.+
T Consensus       226 sDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~i  305 (742)
T TIGR01299       226 ADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGI  305 (742)
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhc-c-------------cchhHHHHHhHHHHHHHHHHHHhhcccccCCC
Q 023846          205 IGYVYGGWVG-H-------------YNWRYAFWGEAILMFPFAVLGFVMKPLQLKGF  247 (276)
Q Consensus       205 ~g~~~~~~l~-~-------------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (276)
                      +++.++..+. .             .+||+.+++.+++.++. ++.+++.||+|++.
T Consensus       306 la~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~-ll~~~~lPESPrwL  361 (742)
T TIGR01299       306 YAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFA-IGALTFMPESPRFF  361 (742)
T ss_pred             HHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHH-HHHHHHcCCCHHHH
Confidence            9988776554 2             36899998877765444 45556679988764

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.91  E-value=8.9e-23  Score=177.59  Aligned_cols=156  Identities=19%  Similarity=0.234  Sum_probs=144.3

Q ss_pred             CccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 023846           88 PGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVG  167 (276)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  167 (276)
                      .+|.+.+++|.+..+.+++.+.+.+++.+++++.|++.||+|||+++..+.++.+++.++++++++++.++++|+++|++
T Consensus        31 ~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~  110 (390)
T PRK03545         31 LLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFA  110 (390)
T ss_pred             chHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            34799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhcccc
Q 023846          168 EASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQ  243 (276)
Q Consensus       168 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  243 (276)
                      .+...+...+++.|++|+++|++++|+...+..+|.+++|++++.+. ..|||+.|++.+++.++..+..+...|+.
T Consensus       111 ~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~  187 (390)
T PRK03545        111 HAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLL  187 (390)
T ss_pred             HHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            99989999999999999999999999999999999999999999988 78999999999988777666555555553

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.90  E-value=2.8e-22  Score=174.62  Aligned_cols=155  Identities=17%  Similarity=0.192  Sum_probs=142.2

Q ss_pred             ccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 023846           89 GTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGE  168 (276)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  168 (276)
                      +|.+.+++|+++.+.++..+.+.++..+++++.|++.||+|||+++..+.++.+++.++++++++++.+++.|++.|++.
T Consensus        43 l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~  122 (394)
T PRK10213         43 LTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLAL  122 (394)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhh
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhcccc
Q 023846          169 ASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQ  243 (276)
Q Consensus       169 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  243 (276)
                      +...+...+++.|++|+++|++++++.....++|.+++|.+++.+. ..+||+.|++.+++.+++.+......|+.
T Consensus       123 g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~  198 (394)
T PRK10213        123 GGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSL  198 (394)
T ss_pred             HHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            9999999999999999999999999999999999999999999998 78999999998877665554444444554

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.90  E-value=5.5e-23  Score=177.16  Aligned_cols=159  Identities=11%  Similarity=0.048  Sum_probs=136.8

Q ss_pred             CCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 023846           87 TPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGV  166 (276)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~  166 (276)
                      |++|.+++|+|++..+.|++.+.+.+++++++++.|+++||+|||+++..+......+.+.....++++.++++|++.|+
T Consensus        12 ~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~   91 (368)
T TIGR00903        12 PVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAAL   91 (368)
T ss_pred             hhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence            46689999999999999999999999999999999999999999988766655555544333333799999999999999


Q ss_pred             hhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhcccccC
Q 023846          167 GEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQLK  245 (276)
Q Consensus       167 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (276)
                      +.+. .......++|++|+++|++++++.+.+..+|.++++++++++. +.|||+.|++.+++.++..++.++..||+++
T Consensus        92 g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~  170 (368)
T TIGR00903        92 GQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPF  170 (368)
T ss_pred             HhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            9886 4556667799999999999999999999999999999999998 8899999999999888877777777787654


Q ss_pred             C
Q 023846          246 G  246 (276)
Q Consensus       246 ~  246 (276)
                      +
T Consensus       171 ~  171 (368)
T TIGR00903       171 Q  171 (368)
T ss_pred             C
Confidence            4

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.90  E-value=6.1e-23  Score=181.05  Aligned_cols=180  Identities=18%  Similarity=0.261  Sum_probs=157.0

Q ss_pred             hhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhc
Q 023846           48 GRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARS  127 (276)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~  127 (276)
                      ++.+...++.++..++++..++.                 .+|.+.+++|++..+.+++.+.+.+++.+++++.|+++||
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr   84 (434)
T PRK11663         22 RHILITMYLGYALFYFTRKSFNA-----------------AMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDR   84 (434)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHH-----------------hhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhh
Confidence            34555566667777666665554                 3478899999999999999999999999999999999999


Q ss_pred             cCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHH
Q 023846          128 VNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGY  207 (276)
Q Consensus       128 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  207 (276)
                      +|||+++.++.++.+++.++++++++++.+++.|++.|++.|...+....++.|++|+++|++++++++.+..+|.+++|
T Consensus        85 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~  164 (434)
T PRK11663         85 SNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIP  164 (434)
T ss_pred             cCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998999999999999999999999999999999999999


Q ss_pred             HHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhccccc
Q 023846          208 VYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQL  244 (276)
Q Consensus       208 ~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (276)
                      .+.+++. ..+||+.|++.+++.++..+...++.++++
T Consensus       165 ~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p  202 (434)
T PRK11663        165 LVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKP  202 (434)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            9999988 889999999988877665555554545543

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.90  E-value=2.1e-22  Score=176.46  Aligned_cols=158  Identities=15%  Similarity=0.150  Sum_probs=144.3

Q ss_pred             CCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 023846           87 TPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGV  166 (276)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~  166 (276)
                      |.+|.+.+++|.+..+.++..+++.+++++++++.|+++||+|||+++..+.++.+++.+++.++++++.++++|+++|+
T Consensus        37 p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi  116 (413)
T PRK15403         37 PGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGT  116 (413)
T ss_pred             cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            56688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhccccc
Q 023846          167 GEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQL  244 (276)
Q Consensus       167 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (276)
                      +.+...+....++.|++|+++|++.+++......+|..+||.+++.+. ..|||+.|++.+++.++..+..++..||++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~  195 (413)
T PRK15403        117 SICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETV  195 (413)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            988777777888999999999999999999999999999999999988 789999999999887776665555566653

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.90  E-value=1.9e-22  Score=176.34  Aligned_cols=183  Identities=19%  Similarity=0.242  Sum_probs=160.9

Q ss_pred             ChhhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhh
Q 023846           46 TPGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLA  125 (276)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~  125 (276)
                      +.+..+.++++..+..+++...++.                 ..|.+.+++|.++.+.+++.+.+.++..+++++.|+++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~   74 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGV-----------------AAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLA   74 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455667777778888888777765                 33789999999999999999999999999999999999


Q ss_pred             hccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhH
Q 023846          126 RSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAI  205 (276)
Q Consensus       126 d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~  205 (276)
                      ||+|||+++..+.++..++.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+
T Consensus        75 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  154 (406)
T PRK11551         75 DRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGAL  154 (406)
T ss_pred             HHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhcccccC
Q 023846          206 GYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQLK  245 (276)
Q Consensus       206 g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (276)
                      ++.+++.+. ..+||+.|++.+++.++..++..++.||+++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  195 (406)
T PRK11551        155 ASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRA  195 (406)
T ss_pred             HHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChh
Confidence            999988887 7899999999887666665555555566543

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.89  E-value=2.7e-22  Score=174.75  Aligned_cols=182  Identities=15%  Similarity=0.183  Sum_probs=158.1

Q ss_pred             CChhhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHh
Q 023846           45 FTPGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASL  124 (276)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l  124 (276)
                      +.+++.+..+++.++..+++...++.                 +.|.+++++|++..+.+++.+.+.++..+++++.|++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l   70 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVAL-----------------VLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLW   70 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566777888888888888887765                 3478999999999999999999999999999999999


Q ss_pred             hhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhh
Q 023846          125 ARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYA  204 (276)
Q Consensus       125 ~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~  204 (276)
                      +||+|||+++.++.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|.+
T Consensus        71 ~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~  150 (405)
T TIGR00891        71 GDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAV  150 (405)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhc-ccc--hhHHHHHhHHHHHHHHHHHHhhccccc
Q 023846          205 IGYVYGGWVG-HYN--WRYAFWGEAILMFPFAVLGFVMKPLQL  244 (276)
Q Consensus       205 ~g~~~~~~l~-~~~--w~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (276)
                      +++.+++.+. ..+  ||+.|++.++..++. ++.....||++
T Consensus       151 ~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~~~~  192 (405)
T TIGR00891       151 VAAQVYSLVVPVWGDGWRALFFISILPIIFA-LWLRKNIPEAE  192 (405)
T ss_pred             HHHHHHHHHHHhcCccHHHHHHHHHHHHHHH-HHHHHhCCCCh
Confidence            9999998887 444  999998866554433 33333445543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.89  E-value=2.6e-22  Score=179.31  Aligned_cols=177  Identities=20%  Similarity=0.372  Sum_probs=159.7

Q ss_pred             HHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccC
Q 023846           50 LLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVN  129 (276)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g  129 (276)
                      .+..+++..+...++......                 .+|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~-----------------~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g   65 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNV-----------------AIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFG   65 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhC
Confidence            455666777777777776654                 347999999999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHH
Q 023846          130 PFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVY  209 (276)
Q Consensus       130 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  209 (276)
                      ||+++.++.++.+++.++++++++++.++++|+++|++.+...+...+++.|++|+++|+++++++.....+|..+||.+
T Consensus        66 ~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  145 (485)
T TIGR00711        66 TRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTL  145 (485)
T ss_pred             cHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhc-ccchhHHHHHhHHHHHHHHHHHHhhcccc
Q 023846          210 GGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQ  243 (276)
Q Consensus       210 ~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  243 (276)
                      ++++. +.+||+.|++.+++.++..++.+++.|++
T Consensus       146 ~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~  180 (485)
T TIGR00711       146 GGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRD  180 (485)
T ss_pred             HhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCc
Confidence            99998 88999999999888777766666665553

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.89  E-value=9.3e-22  Score=170.74  Aligned_cols=157  Identities=18%  Similarity=0.270  Sum_probs=144.4

Q ss_pred             CccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 023846           88 PGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVG  167 (276)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  167 (276)
                      .+|.+++++|.+..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|++
T Consensus        25 ~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~  104 (382)
T PRK10091         25 VLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFP  104 (382)
T ss_pred             ChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence            34789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhccccc
Q 023846          168 EASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQL  244 (276)
Q Consensus       168 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (276)
                      .+...+....++.+++|+++|+++++++..+..+|..++|.+++++. ..+||++|++.+++.++..+..++..|+.+
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~  182 (382)
T PRK10091        105 HGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR  182 (382)
T ss_pred             hHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            99988888889999999999999999999999999999999999988 789999999999887776666555566643

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.89  E-value=3.8e-22  Score=172.69  Aligned_cols=157  Identities=24%  Similarity=0.325  Sum_probs=145.0

Q ss_pred             CccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 023846           88 PGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVG  167 (276)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  167 (276)
                      ..|.+.+++|.+..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++++++++++.++++|++.|++
T Consensus        16 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   95 (399)
T TIGR00893        16 AAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAA   95 (399)
T ss_pred             hHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            34789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhccccc
Q 023846          168 EASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQL  244 (276)
Q Consensus       168 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (276)
                      .+...+....++.|++|+++|++++++.+....+|..++|.+++.+. ..+||+.|++.+++.++..+..+++.|+++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (399)
T TIGR00893        96 EAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPP  173 (399)
T ss_pred             HHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCC
Confidence            99999999999999999999999999999999999999999999887 889999999998887776666665555543

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.89  E-value=8.1e-22  Score=175.42  Aligned_cols=202  Identities=17%  Similarity=0.189  Sum_probs=162.2

Q ss_pred             CCChhhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCC-----CCCCccccccccCCCchhHHHHHHHHHHHHHHHH
Q 023846           44 WFTPGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANG-----TCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVAS  118 (276)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  118 (276)
                      .+.++.+..++++++...+.|+..++.......-.+.++..     ..+.......+++++..+.|++.+.+.+++.+++
T Consensus        14 ~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~   93 (465)
T TIGR00894        14 CSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQ   93 (465)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHH
Confidence            34455667777788888899999888765322111111100     0111122233789999999999999999999999


Q ss_pred             hHHHHhhhccCChhhHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHH
Q 023846          119 PIFASLARSVNPFRLIGVGLTVWTLAVVGCGFS--FSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFY  196 (276)
Q Consensus       119 ~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~  196 (276)
                      ++.|+++||+|||+++.++.++.+++.+++.++  .+++.+++.|+++|++.+...+....++.|++|+++|++++++..
T Consensus        94 ~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  173 (465)
T TIGR00894        94 IPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMST  173 (465)
T ss_pred             cchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHH
Confidence            999999999999999999999998888876544  468889999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhHHHHHHHhhc-c-cchhHHHHHhHHHHHHHHHHHHhhcccccC
Q 023846          197 MCLPSGYAIGYVYGGWVG-H-YNWRYAFWGEAILMFPFAVLGFVMKPLQLK  245 (276)
Q Consensus       197 ~~~~~g~~~g~~~~~~l~-~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (276)
                      .+..+|.+++|++++.+. . .+||+.|++.+++.++..++.+++.+++++
T Consensus       174 ~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~  224 (465)
T TIGR00894       174 SGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPS  224 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcc
Confidence            999999999999999988 6 499999999999887777666666555443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.89  E-value=1.1e-21  Score=170.02  Aligned_cols=157  Identities=15%  Similarity=0.239  Sum_probs=145.2

Q ss_pred             CccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 023846           88 PGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVG  167 (276)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  167 (276)
                      .+|.+.+++|.+..+.+++.+.+.++..+++++.|++.||+|||+++..+.++.+++.+++.++++++.+++.|++.|++
T Consensus        27 ~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~  106 (385)
T TIGR00710        27 AFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFG  106 (385)
T ss_pred             cHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            55789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhccccc
Q 023846          168 EASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQL  244 (276)
Q Consensus       168 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (276)
                      .+...+...+++.|++|+++|++++++.+....+|..++|.+++.+. ..+||+.|++.+++.++..+..++..||.+
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (385)
T TIGR00710       107 ASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETL  184 (385)
T ss_pred             hhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            99999999999999999999999999999999999999999999888 789999999988887777666666556543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.88  E-value=5.7e-22  Score=176.92  Aligned_cols=181  Identities=16%  Similarity=0.231  Sum_probs=148.1

Q ss_pred             hhhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCcccccccc--------CCCchhHHHHHHHHHHHHHHHH
Q 023846           47 PGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDF--------DLNNFQDGVLSSAFMVGLLVAS  118 (276)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~i~~  118 (276)
                      ..+...++.++.+...++...++.                 .++.++++|        +.+..+.+++.+.+.++.++++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~   72 (479)
T PRK10077         10 IFSITLVATLGGLLFGYDTAVISG-----------------TVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGG   72 (479)
T ss_pred             HHHHHHHHHHHHHhcCcccceehH-----------------hHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHH
Confidence            345556666677777776666554                 224555554        8889999999999999999999


Q ss_pred             hHHHHhhhccCChhhHHHHHHHHHHHHHHHhhh------------hhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcch
Q 023846          119 PIFASLARSVNPFRLIGVGLTVWTLAVVGCGFS------------FSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVA  186 (276)
Q Consensus       119 ~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~  186 (276)
                      +++|+++||+|||+++.++.++++++.++++++            ..+..++++|+++|++.|...+...++++|++|++
T Consensus        73 ~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~  152 (479)
T PRK10077         73 ALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAH  152 (479)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChh
Confidence            999999999999999999999999888877763            23567889999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHhhhhhhHHHHHHHhhc---------ccchhHHHHHhHHHHHHHHHHHHhhcccccC
Q 023846          187 KKTAWLGVFYMCLPSGYAIGYVYGGWVG---------HYNWRYAFWGEAILMFPFAVLGFVMKPLQLK  245 (276)
Q Consensus       187 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~---------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (276)
                      +|++++++.+.+..+|.++++.+++.+.         ..+||+.|++.+++.++..+. .++.||+++
T Consensus       153 ~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~~  219 (479)
T PRK10077        153 IRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPETPR  219 (479)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCCCcH
Confidence            9999999999999999999888766542         468999999988877665544 445677654

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.88  E-value=7.3e-23  Score=182.20  Aligned_cols=180  Identities=15%  Similarity=0.130  Sum_probs=154.7

Q ss_pred             hhhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhh
Q 023846           47 PGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLAR  126 (276)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d  126 (276)
                      .++++..+++.+++.+.++..++..                 +|.+.+++|++..+.|++.+.+.+++.+++++.|+++|
T Consensus        27 ~~~i~~~~~~~~~~~y~~r~~~~~~-----------------~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~D   89 (467)
T PRK09556         27 FMQSYLVVFIGYLTMYLIRKNFKAA-----------------QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYAD   89 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhh-----------------hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhh
Confidence            4556777788888889999888753                 47899999999999999999999999999999999999


Q ss_pred             ccCChhhHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhh
Q 023846          127 SVNPFRLIGVGLTVWTLAVVGCGF-----SFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPS  201 (276)
Q Consensus       127 ~~grr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~  201 (276)
                      |+|||+++.++.++.++..+..++     +++++.+++.|++.|++.+...+....++.|++|+++||+++|+++.+.++
T Consensus        90 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~l  169 (467)
T PRK09556         90 GKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNL  169 (467)
T ss_pred             ccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccch
Confidence            999999998888877776665554     589999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHhhc-c---cchhHHHHHhHHHHHHHHHHHHhhcccc
Q 023846          202 GYAIGYVYGGWVG-H---YNWRYAFWGEAILMFPFAVLGFVMKPLQ  243 (276)
Q Consensus       202 g~~~g~~~~~~l~-~---~~w~~~~~~~~~~~~~~~~~~~~~~~~~  243 (276)
                      |.++++++..++. .   .+||..|.+.+++.++..++.+++.++.
T Consensus       170 G~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~  215 (467)
T PRK09556        170 GGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDS  215 (467)
T ss_pred             hhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9999998887665 3   2699999988888777666666554443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.88  E-value=1.1e-21  Score=167.70  Aligned_cols=153  Identities=27%  Similarity=0.485  Sum_probs=138.8

Q ss_pred             c-ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 023846           90 T-GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGE  168 (276)
Q Consensus        90 ~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  168 (276)
                      | .+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||+++.++.++.+++.++..++++.+.+++.|++.|++.
T Consensus        20 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~   99 (352)
T PF07690_consen   20 PLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGS   99 (352)
T ss_dssp             H-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhcccccccc
Confidence            5 788999999999999999999999999999999999999999999999999999666667688889999999999999


Q ss_pred             hhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhccc
Q 023846          169 ASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPL  242 (276)
Q Consensus       169 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~  242 (276)
                      +...+....++.|++|+++|++++++.+....+|.+++|.+++.+. ..+||+.|++.+++.++..++..++.++
T Consensus       100 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~  174 (352)
T PF07690_consen  100 GFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPE  174 (352)
T ss_dssp             HHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC--
T ss_pred             ccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhh
Confidence            9999999999999999999999999999999999999999999998 8899999999999888877654444443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.88  E-value=1.7e-21  Score=171.78  Aligned_cols=169  Identities=13%  Similarity=0.085  Sum_probs=137.1

Q ss_pred             hhhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccccC---CCchhHHHHH---HHHHHHHHHHHhH
Q 023846           47 PGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFD---LNNFQDGVLS---SAFMVGLLVASPI  120 (276)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~i~~~~  120 (276)
                      +++.+...++.+++.++|...++...                 |.+.++++   .+..+.+...   +...++..+++++
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~~~~~~-----------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~   82 (432)
T PRK10406         20 RIWAIVGASSGNLVEWFDFYVYSFCS-----------------LYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWL   82 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455666678888999998887643                 68888884   4555444444   4444555599999


Q ss_pred             HHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHH
Q 023846          121 FASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFW--------MIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWL  192 (276)
Q Consensus       121 ~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~  192 (276)
                      +|+++||+|||+++.++.++++++.+++++++++.        .++++|+++|++.|..++...++++|++|+++|+++.
T Consensus        83 ~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~  162 (432)
T PRK10406         83 FGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYA  162 (432)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHH
Confidence            99999999999999999999999999999988764        6889999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhHHHHHHHhhc---------ccchhHHHHHhHHHHHHH
Q 023846          193 GVFYMCLPSGYAIGYVYGGWVG---------HYNWRYAFWGEAILMFPF  232 (276)
Q Consensus       193 ~~~~~~~~~g~~~g~~~~~~l~---------~~~w~~~~~~~~~~~~~~  232 (276)
                      ++.+.+...|.++++.+...+.         .+|||++|++.+++.++.
T Consensus       163 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        163 SFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence            9998888888888877654442         479999999877766543

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.88  E-value=1.8e-21  Score=171.25  Aligned_cols=165  Identities=18%  Similarity=0.227  Sum_probs=148.8

Q ss_pred             ChhhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhh
Q 023846           46 TPGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLA  125 (276)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~  125 (276)
                      .+++.+..+.+.++...++......                 .+|.+.+++|+++.+.+++.+++.+++.+++++.|+++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~   77 (426)
T PRK12307         15 PQKNALFSAWLGYVFDGFDFMLIFY-----------------IMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLA   77 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHH-----------------HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345566677777777777766654                 34788999999999999999999999999999999999


Q ss_pred             hccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhH
Q 023846          126 RSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAI  205 (276)
Q Consensus       126 d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~  205 (276)
                      ||+|||+++.++.++.+++.++++++++++.++++|++.|++.+..++....++.|++|+++|+++.++...+..+|.++
T Consensus        78 dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~  157 (426)
T PRK12307         78 DKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNII  157 (426)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhc-ccchhHHHHHhHH
Q 023846          206 GYVYGGWVG-HYNWRYAFWGEAI  227 (276)
Q Consensus       206 g~~~~~~l~-~~~w~~~~~~~~~  227 (276)
                      ++.+.+.+. ..+||+.|++..+
T Consensus       158 ~~~l~~~l~~~~~w~~~f~i~~~  180 (426)
T PRK12307        158 AAYFMPSFAEAYGWRAAFFVGLL  180 (426)
T ss_pred             HHHHHHHHcccCCHHHHHHHHHH
Confidence            999988887 7899999988544

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.87  E-value=1.5e-21  Score=168.22  Aligned_cols=154  Identities=16%  Similarity=0.072  Sum_probs=138.0

Q ss_pred             CccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 023846           88 PGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVG  167 (276)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  167 (276)
                      .+|.+.+++|++..+.+++.+++.+++.+++++.|+++||+|||+++.++.++.+++.++++++++++.++++|++.|++
T Consensus        25 ~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  104 (377)
T TIGR00890        25 LAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAG  104 (377)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            34799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhccc
Q 023846          168 EASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPL  242 (276)
Q Consensus       168 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~  242 (276)
                      .+..++.....+.+++| ++|+++.++...+..+|..+++++.+.+. ..+||+.|++.+++.++..+..+++.++
T Consensus       105 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  179 (377)
T TIGR00890       105 VGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGY  179 (377)
T ss_pred             HHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheec
Confidence            99988888888999987 67999999999999999887665555555 7899999999998887777666655443

>PRK03699 putative transporter; Provisional

Probab=99.87  E-value=5.6e-21  Score=166.54  Aligned_cols=174  Identities=16%  Similarity=0.102  Sum_probs=151.5

Q ss_pred             hhhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhh
Q 023846           47 PGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLAR  126 (276)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d  126 (276)
                      +++....+++.++....+...++.                 .+|.+.+++|++..+.+++.+.+.+++.+++++.|++.|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~g~-----------------~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d   67 (394)
T PRK03699          5 RIKLTWISFLSYALTGALVIVTGM-----------------VMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLME   67 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhh-----------------hhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666666677776666555554                 447899999999999999999999999999999999999


Q ss_pred             ccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHH
Q 023846          127 SVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIG  206 (276)
Q Consensus       127 ~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  206 (276)
                      |+|||+++.++.++.+++.++++++++++.+++.|++.|++.+...+....++.|++|+++|+++++..+....+|..++
T Consensus        68 r~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~  147 (394)
T PRK03699         68 IIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIF  147 (394)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999899999999


Q ss_pred             HHHHHhhc--ccchhHHHHHhHHHHHHHHHHHH
Q 023846          207 YVYGGWVG--HYNWRYAFWGEAILMFPFAVLGF  237 (276)
Q Consensus       207 ~~~~~~l~--~~~w~~~~~~~~~~~~~~~~~~~  237 (276)
                      |.+.+.+.  ..+||+.|++.+++.++..++.+
T Consensus       148 ~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~  180 (394)
T PRK03699        148 PIIAAYLLARSIEWYWVYACIGLVYVAIFILTL  180 (394)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            99888775  57999999998887766554443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.87  E-value=1.3e-21  Score=173.62  Aligned_cols=155  Identities=18%  Similarity=0.265  Sum_probs=132.8

Q ss_pred             ccccccccCCC--------chhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhh---hHHHH
Q 023846           89 GTGIQGDFDLN--------NFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSF---SFWMI  157 (276)
Q Consensus        89 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~---~~~~~  157 (276)
                      ++.+..+++.+        ..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.+++.+..   +++.+
T Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (481)
T TIGR00879        51 LALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEML  130 (481)
T ss_pred             hhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence            35667777666        88999999999999999999999999999999999999999999988885543   45689


Q ss_pred             HHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHH---Hhhc-ccchhHHHHHhHHHHHHHH
Q 023846          158 AICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYG---GWVG-HYNWRYAFWGEAILMFPFA  233 (276)
Q Consensus       158 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~---~~l~-~~~w~~~~~~~~~~~~~~~  233 (276)
                      +++|++.|++.+...+....++.|++|+++|++++++++.+..+|.++++.++   .... ..+||+.|++.++..++..
T Consensus       131 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~  210 (481)
T TIGR00879       131 IVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLF  210 (481)
T ss_pred             HHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998   6655 7899999999666554443


Q ss_pred             HHHHhhccccc
Q 023846          234 VLGFVMKPLQL  244 (276)
Q Consensus       234 ~~~~~~~~~~~  244 (276)
                       +..++.||++
T Consensus       211 -~~~~~l~~~~  220 (481)
T TIGR00879       211 -LGLFFLPESP  220 (481)
T ss_pred             -HHHhcCCCCh
Confidence             3344456554

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.87  E-value=3e-21  Score=172.79  Aligned_cols=180  Identities=12%  Similarity=0.127  Sum_probs=144.6

Q ss_pred             hhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccccCCCchh-HHH-----HHHHHHHHHHHHHhHH
Q 023846           48 GRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQ-DGV-----LSSAFMVGLLVASPIF  121 (276)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~i~~~~~  121 (276)
                      ++.+....+++++.++|...++..                 .|.+.++++.+... .++     +.++..+++.++++++
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~   77 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFV-----------------AYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFF   77 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677778888999998887763                 36888888643322 122     2477788999999999


Q ss_pred             HHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHH--------HHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHH
Q 023846          122 ASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWM--------IAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLG  193 (276)
Q Consensus       122 g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~  193 (276)
                      |+++||+|||+++.++.++++++.+++++++++..        ++++|+++|++.|..++....+++|++|+++||++.+
T Consensus        78 G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~  157 (490)
T PRK10642         78 GMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGS  157 (490)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHH
Confidence            99999999999999999999999999999999874        8899999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhHHHHHHHhhc---------ccchhHHHHHhHHHHHHHHHHHHhhcccccC
Q 023846          194 VFYMCLPSGYAIGYVYGGWVG---------HYNWRYAFWGEAILMFPFAVLGFVMKPLQLK  245 (276)
Q Consensus       194 ~~~~~~~~g~~~g~~~~~~l~---------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (276)
                      +...+..+|..+|+.+...+.         ++|||++|++.+++.++ .+++....||+++
T Consensus       158 ~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~  217 (490)
T PRK10642        158 WLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETPA  217 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCChh
Confidence            999888888888776554332         47999999997665543 3333344566654

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.87  E-value=6.7e-21  Score=165.97  Aligned_cols=145  Identities=13%  Similarity=0.108  Sum_probs=134.0

Q ss_pred             CCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 023846           87 TPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGV  166 (276)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~  166 (276)
                      +++|.+++++|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.++++++++++.++++|+++|+
T Consensus        30 ~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gi  109 (393)
T PRK09705         30 PLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGV  109 (393)
T ss_pred             hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHh
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-c-cchhHHHHHhHHHHHHH
Q 023846          167 GEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-H-YNWRYAFWGEAILMFPF  232 (276)
Q Consensus       167 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~-~~w~~~~~~~~~~~~~~  232 (276)
                      +.+...+....++.+++| ++|+++++++..+..+|..+++.+++++. + .+||+.+.+.++..++.
T Consensus       110 g~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~  176 (393)
T PRK09705        110 GIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVA  176 (393)
T ss_pred             HHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            999999999999999997 88999999999999999999999999887 4 48999887766655443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.87  E-value=2.8e-21  Score=173.54  Aligned_cols=185  Identities=18%  Similarity=0.124  Sum_probs=152.4

Q ss_pred             CChhhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccc-----cCCCchhHHHHHHHHHHHHHHHHh
Q 023846           45 FTPGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGD-----FDLNNFQDGVLSSAFMVGLLVASP  119 (276)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~  119 (276)
                      +..++.+.++.+..+...++...++...                 |.+..+     .+.+..+.+++.+.+.++.+++++
T Consensus        12 ~~~~~~~~~~~~~~~~~g~d~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~   74 (502)
T TIGR00887        12 WQHFRAIVIAGVGFFTDSYDLFCISLVT-----------------KMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQL   74 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHH
Confidence            3455667777788888888887776532                 344432     245566779999999999999999


Q ss_pred             HHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHH
Q 023846          120 IFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFS------FWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLG  193 (276)
Q Consensus       120 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~  193 (276)
                      ++|+++||+|||+++.++.++..++.++++++++      ++.++++|++.|++.|...+....++.|++|+++|+++++
T Consensus        75 ~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~  154 (502)
T TIGR00887        75 FFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMA  154 (502)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHH
Confidence            9999999999999999999999999998888765      7899999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhHHHHHHHhhc------------------------ccchhHHHHHhHHHHHHHHHHHHhhcccccCCC
Q 023846          194 VFYMCLPSGYAIGYVYGGWVG------------------------HYNWRYAFWGEAILMFPFAVLGFVMKPLQLKGF  247 (276)
Q Consensus       194 ~~~~~~~~g~~~g~~~~~~l~------------------------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (276)
                      +.+.+..+|.++++.++..+.                        .++||+.+.+.+++.++.. +..++.||++++.
T Consensus       155 ~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~-~~~~~lpESpr~l  231 (502)
T TIGR00887       155 AVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLAL-YFRLTIPETPRYT  231 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHH-HHHHhCCCCHHHH
Confidence            999999999999988876542                        2479999988777665443 3345679988764

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.87  E-value=4.8e-21  Score=167.54  Aligned_cols=157  Identities=14%  Similarity=0.088  Sum_probs=142.3

Q ss_pred             CccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 023846           88 PGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVG  167 (276)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  167 (276)
                      .+|.+.+++|.+..+.++..+.+.+++.+++++.|+++||+|||+++.++..+.+++.+++.++++++.+++.|++.|++
T Consensus        35 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~  114 (406)
T PRK15402         35 GMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIG  114 (406)
T ss_pred             chHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhH
Confidence            44788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhccccc
Q 023846          168 EASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQL  244 (276)
Q Consensus       168 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (276)
                      .+...+...+++.|.+|+++|++..++......+|..++|.+++.+. ..+||+.|++.+++.++..+..++..|+++
T Consensus       115 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (406)
T PRK15402        115 LCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETA  192 (406)
T ss_pred             hhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            99888889999999999999999999998888899999999999888 789999999988887776665555556543

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.87  E-value=6.3e-22  Score=170.69  Aligned_cols=157  Identities=16%  Similarity=0.252  Sum_probs=142.4

Q ss_pred             CccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 023846           88 PGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVG  167 (276)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  167 (276)
                      .+|.+.+++|++..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.+++.++++++.+++.|++.|++
T Consensus        17 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   96 (379)
T TIGR00881        17 AMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIF   96 (379)
T ss_pred             hhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            34789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHH-HHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhccccc
Q 023846          168 EASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGY-VYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQL  244 (276)
Q Consensus       168 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~-~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (276)
                      .+...+...+++.|++|+++|++++++.+.+..+|..++| .+++.+. ..+||+.|++.+++.++..++.+++.|+++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (379)
T TIGR00881        97 QGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSP  175 (379)
T ss_pred             ccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCc
Confidence            9999999999999999999999999999999999999999 5666666 789999999988877776666665555543

>TIGR00895 2A0115 benzoate transport

Probab=99.87  E-value=2.3e-21  Score=168.30  Aligned_cols=181  Identities=20%  Similarity=0.388  Sum_probs=155.8

Q ss_pred             hhhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhh
Q 023846           47 PGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLAR  126 (276)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d  126 (276)
                      .++.+..+.+.++...++....+.                 .+|.+.+++|.+..+.+++.+.+.++..++.++.|+++|
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d   77 (398)
T TIGR00895        15 QWRAIILSFLIMLMDGYDLAAMGF-----------------AAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLAD   77 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-----------------hHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            344555555556655555544443                 337889999999999999999999999999999999999


Q ss_pred             ccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHH
Q 023846          127 SVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIG  206 (276)
Q Consensus       127 ~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  206 (276)
                      |+|||+.+..+.++..++.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..++
T Consensus        78 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  157 (398)
T TIGR00895        78 RIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVG  157 (398)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhccccc
Q 023846          207 YVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQL  244 (276)
Q Consensus       207 ~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (276)
                      +.+++++. ..+|++.|++.+++.++..++.+++.|+++
T Consensus       158 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (398)
T TIGR00895       158 GFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESI  196 (398)
T ss_pred             HHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence            99999988 889999999987666666666555566543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.87  E-value=2e-20  Score=166.84  Aligned_cols=154  Identities=15%  Similarity=0.074  Sum_probs=131.9

Q ss_pred             CccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 023846           88 PGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVG  167 (276)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  167 (276)
                      .+|.+.+++|++..+.+++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.++++++++++.++++|++.|++
T Consensus        58 ~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~  137 (476)
T PLN00028         58 LLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFS  137 (476)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            34789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc----------ccchhHHHHHhHHHHHHHHHHHH
Q 023846          168 EASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG----------HYNWRYAFWGEAILMFPFAVLGF  237 (276)
Q Consensus       168 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~----------~~~w~~~~~~~~~~~~~~~~~~~  237 (276)
                      .+... ....+++|++|+++|++++++.+...++|..+++.+.+.+.          ..|||+.|++.+++.++..++.+
T Consensus       138 ~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~  216 (476)
T PLN00028        138 LATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVL  216 (476)
T ss_pred             HHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHH
Confidence            87654 45668899999999999999998877777777766554432          14899999999998877776666


Q ss_pred             hhccc
Q 023846          238 VMKPL  242 (276)
Q Consensus       238 ~~~~~  242 (276)
                      ++.++
T Consensus       217 ~~~~~  221 (476)
T PLN00028        217 TLGQD  221 (476)
T ss_pred             HHcCc
Confidence            55443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.87  E-value=8.7e-21  Score=170.06  Aligned_cols=166  Identities=18%  Similarity=0.299  Sum_probs=150.2

Q ss_pred             ChhhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhh
Q 023846           46 TPGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLA  125 (276)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~  125 (276)
                      .+++.+..+++.+++..++...++.                 .+|.+.+++|++..+.+++.+.+.+++.+++++.|+++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~   79 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITL-----------------VLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMG   79 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455677777788887777776664                 34789999999999999999999999999999999999


Q ss_pred             hccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhH
Q 023846          126 RSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAI  205 (276)
Q Consensus       126 d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~  205 (276)
                      ||+|||+++.++.++.+++.++++++++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+
T Consensus        80 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  159 (496)
T PRK03893         80 DRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVV  159 (496)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhc-ccchhHHHHHhHHH
Q 023846          206 GYVYGGWVG-HYNWRYAFWGEAIL  228 (276)
Q Consensus       206 g~~~~~~l~-~~~w~~~~~~~~~~  228 (276)
                      +|.+.+.+. ..+||+.|++..+.
T Consensus       160 ~~~~~~~l~~~~~w~~~f~~~~~~  183 (496)
T PRK03893        160 AAQVYSLVVPVWGWRALFFIGILP  183 (496)
T ss_pred             HHHHHHHHhccCCHHHHHHHHHHH
Confidence            999999988 88999999875443

>TIGR00898 2A0119 cation transport protein

Probab=99.87  E-value=2.7e-21  Score=173.81  Aligned_cols=157  Identities=19%  Similarity=0.279  Sum_probs=142.6

Q ss_pred             CCccccccccCCC---chhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 023846           87 TPGTGIQGDFDLN---NFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRML  163 (276)
Q Consensus        87 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l  163 (276)
                      +..+.+.+|+|++   ..+.+++.+++.++.++++++.|+++||+|||++++++.++.+++.++++++++++.++++|++
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l  189 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL  189 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            4568999999998   8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhhcccc
Q 023846          164 VGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGHYNWRYAFWGEAILMFPFAVLGFVMKPLQ  243 (276)
Q Consensus       164 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  243 (276)
                      .|++.+...+....++.|++|+++|+++.++...+..+|.++++.++..+..  ||+.|++.+++.++..+.. ++.||+
T Consensus       190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~--wr~~~~~~~i~~~~~~~~~-~~~~es  266 (505)
T TIGR00898       190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD--WRWLQLAVSLPTFLFFLLS-WFVPES  266 (505)
T ss_pred             HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence            9999999999999999999999999999999999999999999988766644  9999999998876665554 556777


Q ss_pred             cCC
Q 023846          244 LKG  246 (276)
Q Consensus       244 ~~~  246 (276)
                      +++
T Consensus       267 p~~  269 (505)
T TIGR00898       267 PRW  269 (505)
T ss_pred             hHH
Confidence            654

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.86  E-value=2e-20  Score=163.06  Aligned_cols=157  Identities=13%  Similarity=0.151  Sum_probs=142.1

Q ss_pred             CccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 023846           88 PGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVG  167 (276)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  167 (276)
                      .+|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+++.++.++.+++.+++.++++++.+++.|++.|++
T Consensus        30 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  109 (394)
T PRK11652         30 AIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLG  109 (394)
T ss_pred             cHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhccccc
Q 023846          168 EASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQL  244 (276)
Q Consensus       168 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (276)
                      .+...+....++.|.++.++++++.++.+.+..+|..++|.+++.+. ..+||+.|++.+++.++..+...++.||++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~  187 (394)
T PRK11652        110 TGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETR  187 (394)
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence            98888888889999999999999999999999999999999999988 789999999988877666555555556543

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.86  E-value=2.1e-21  Score=170.96  Aligned_cols=186  Identities=20%  Similarity=0.303  Sum_probs=165.5

Q ss_pred             CCChhhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHH
Q 023846           44 WFTPGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFAS  123 (276)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~  123 (276)
                      ++....++..++..++..+.+...++...+                -.+.+|.+....+.+.+.+++.++++++.++++.
T Consensus        40 ~K~dl~i~~~~~~~y~~~~~d~~si~~a~l----------------~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~  103 (495)
T KOG2533|consen   40 RKLDLFILPFLCYLYFHAYLDKSSIVNASL----------------SGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGL  103 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchhcchhHHH----------------cCCccccchhhhhhhhHHHHHHHHHHHHHhhHHH
Confidence            334445567777788888888888876543                3567888999999999999999999999999999


Q ss_pred             hhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhh
Q 023846          124 LARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGY  203 (276)
Q Consensus       124 l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~  203 (276)
                      +.||++..+.+....++..+..++....+|++.+++.|++.|+.++..+|....+++.|+.+++|++.++++....++|+
T Consensus       104 L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~  183 (495)
T KOG2533|consen  104 LGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGN  183 (495)
T ss_pred             HHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhh
Confidence            99999988888888888888887777899999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhh------c-ccchhHHHHHhHHHHHHHHHHHHhhcccccC
Q 023846          204 AIGYVYGGWV------G-HYNWRYAFWGEAILMFPFAVLGFVMKPLQLK  245 (276)
Q Consensus       204 ~~g~~~~~~l------~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (276)
                      ++|.+++..+      . ..||||.|++.|+++++..++++++.|+.|.
T Consensus       184 i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  184 IFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             HHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence            9999998885      2 6799999999999999999999998888776

>PRK10504 putative transporter; Provisional

Probab=99.86  E-value=1.8e-20  Score=167.09  Aligned_cols=177  Identities=16%  Similarity=0.213  Sum_probs=154.0

Q ss_pred             HHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccC
Q 023846           50 LLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVN  129 (276)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g  129 (276)
                      .+..++++.+...++.+.+..                 .+|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~-----------------~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g   73 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNT-----------------ALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVG   73 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHH-----------------HHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            445555666666666655543                 347899999999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHH
Q 023846          130 PFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVY  209 (276)
Q Consensus       130 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  209 (276)
                      ||++++.+.++.+++.++++++++++.++++|+++|++.+...+...+++.|++|+++|+++.++.....++|..+||.+
T Consensus        74 ~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~  153 (471)
T PRK10504         74 VRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPAL  153 (471)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhc-ccchhHHHHHhHHHHHHHHHHHHhhcccc
Q 023846          210 GGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQ  243 (276)
Q Consensus       210 ~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  243 (276)
                      ++.+. ..+||+.|++...+..+..+......|+.
T Consensus       154 ~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~  188 (471)
T PRK10504        154 GGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNY  188 (471)
T ss_pred             HHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            99998 88999999998877666666555555543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.86  E-value=1.4e-20  Score=162.91  Aligned_cols=159  Identities=20%  Similarity=0.335  Sum_probs=146.2

Q ss_pred             CCCCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 023846           85 TCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLV  164 (276)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~  164 (276)
                      ..|.+|.+.+++|+++.+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.+++.++++++.+++.|++.
T Consensus        10 ~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~   89 (377)
T PRK11102         10 YLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLH   89 (377)
T ss_pred             HhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            34677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhcccc
Q 023846          165 GVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQ  243 (276)
Q Consensus       165 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  243 (276)
                      |++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+. ..+||+.|++.+++.++..+...+..|++
T Consensus        90 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (377)
T PRK11102         90 GLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPET  169 (377)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            99999999999999999999999999999999999999999999999988 78999999998888777666666555654

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.85  E-value=4.9e-20  Score=160.45  Aligned_cols=157  Identities=15%  Similarity=0.182  Sum_probs=143.8

Q ss_pred             CccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 023846           88 PGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVG  167 (276)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  167 (276)
                      .+|.+.+++|.+..+.++..+.+.++..+++++.|+++||+|||+.+..+.++.+++.+++.++++++.+++.|++.|++
T Consensus        25 ~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~  104 (392)
T PRK10473         25 GLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIG  104 (392)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence            34799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhccccc
Q 023846          168 EASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQL  244 (276)
Q Consensus       168 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (276)
                      .+...+....++.|.+|+++|+++.++.+....+|..++|.+++.+. ..+|++.|++.+++.++..++.++..||++
T Consensus       105 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~  182 (392)
T PRK10473        105 AGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETR  182 (392)
T ss_pred             hhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999998887 789999999998887777766666555543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.85  E-value=1.8e-20  Score=160.86  Aligned_cols=150  Identities=17%  Similarity=0.121  Sum_probs=137.1

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHH
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSF-----SFWMIAICRMLV  164 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~r~l~  164 (276)
                      |.+..+++.+..+.+++.+.+.++.++++++.|+++||+|||+++.++.++..++.++..+++     +++.++++|++.
T Consensus        23 ~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  102 (365)
T TIGR00900        23 PLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGIL  102 (365)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            677788999999999999999999999999999999999999999999999988888888887     999999999999


Q ss_pred             HhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhh
Q 023846          165 GVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVM  239 (276)
Q Consensus       165 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~  239 (276)
                      |++.+...+...+++.|++|+++|++++++.+....+|.+++|.+++.+. ..+||+.|++.++..++..+..+.+
T Consensus       103 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  178 (365)
T TIGR00900       103 AIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSV  178 (365)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999998 8899999999877665555444444

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.85  E-value=3.9e-20  Score=159.35  Aligned_cols=156  Identities=19%  Similarity=0.196  Sum_probs=130.1

Q ss_pred             Ccc-ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHH
Q 023846           88 PGT-GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSF-SFWMIAICRMLVG  165 (276)
Q Consensus        88 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G  165 (276)
                      .+| .+++++|++..+.+++.+.+.+++++++++.|+++||+|||+.+.++.++.+++.+++++++ +++.+++.|++.|
T Consensus        23 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g  102 (366)
T TIGR00886        23 LAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIG  102 (366)
T ss_pred             hhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            346 48899999999999999999999999999999999999999999999999999999999999 9999999999999


Q ss_pred             hhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-c----------cchhHHH-HHhHHHHHHHH
Q 023846          166 VGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-H----------YNWRYAF-WGEAILMFPFA  233 (276)
Q Consensus       166 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~----------~~w~~~~-~~~~~~~~~~~  233 (276)
                      ++.+. .+....++.|++|+++|++++++.....++|..+++.+++.+. .          .+||+.| +..+++..+..
T Consensus       103 ~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  181 (366)
T TIGR00886       103 IAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPA  181 (366)
T ss_pred             Hhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHH
Confidence            98654 5667889999999999999999999888888887777766554 1          3899999 44455554544


Q ss_pred             HHHHhhccccc
Q 023846          234 VLGFVMKPLQL  244 (276)
Q Consensus       234 ~~~~~~~~~~~  244 (276)
                      ++.+++.++.+
T Consensus       182 ~~~~~~~~~~~  192 (366)
T TIGR00886       182 LLIFFVGADTP  192 (366)
T ss_pred             HHHHHhcccCC
Confidence            44444444433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.85  E-value=1.9e-20  Score=166.10  Aligned_cols=180  Identities=14%  Similarity=0.094  Sum_probs=145.7

Q ss_pred             hhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhc
Q 023846           48 GRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARS  127 (276)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~  127 (276)
                      |.++..+++.+...+.++..++.                 .+|++.++ |++..+.+++.+.+.+++.+++++.|+++||
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~-----------------~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr   89 (452)
T PRK11273         28 WQIFLGIFFGYAAYYLVRKNFAL-----------------AMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDR   89 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----------------hhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence            34444455555666666555543                 23688887 9999999999999999999999999999999


Q ss_pred             cCChhhHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhh
Q 023846          128 VNPFRLIGVGLTVWTLAVVGCGFSF----SFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGY  203 (276)
Q Consensus       128 ~grr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~  203 (276)
                      +|||++++++.++.+++.+++++++    +++.+++.|++.|++.+...+.....+.+++|+++|++++++++.+..+|.
T Consensus        90 ~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  169 (452)
T PRK11273         90 SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGG  169 (452)
T ss_pred             cCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999888887753    788889999999999998888888889999999999999999999999987


Q ss_pred             h-HHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhcccccC
Q 023846          204 A-IGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQLK  245 (276)
Q Consensus       204 ~-~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (276)
                      . ++|+++..+. ..+||+.|++.+++.++..++.+++.|++++
T Consensus       170 ~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~  213 (452)
T PRK11273        170 GLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQ  213 (452)
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHh
Confidence            5 4665544444 5599999999988777766666666565443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.85  E-value=5.8e-20  Score=162.98  Aligned_cols=152  Identities=16%  Similarity=0.171  Sum_probs=135.3

Q ss_pred             ccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHhh
Q 023846           89 GTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAI-CRMLVGVG  167 (276)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~l~G~~  167 (276)
                      +|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++.++++++++++.+++ .|++.|++
T Consensus        42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~  121 (455)
T TIGR00892        42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLG  121 (455)
T ss_pred             HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence            47889999999999999999999999999999999999999999999999999999999999999998875 56899999


Q ss_pred             hhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhcc
Q 023846          168 EASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKP  241 (276)
Q Consensus       168 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~  241 (276)
                      .+...+....++.++++ ++|++++++.+.+..+|..++|.+++.+. ..|||++|++.+++.++..+..+++.+
T Consensus       122 ~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~  195 (455)
T TIGR00892       122 LAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRP  195 (455)
T ss_pred             chhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCC
Confidence            98776777788889986 89999999999999999999999999888 789999999999887766555555544

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.85  E-value=9.9e-20  Score=157.07  Aligned_cols=134  Identities=10%  Similarity=0.014  Sum_probs=127.8

Q ss_pred             cccccccCCCchh-HHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 023846           90 TGIQGDFDLNNFQ-DGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGE  168 (276)
Q Consensus        90 ~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  168 (276)
                      |++.+++|++..+ .|.+.+.+..+++++.++.|+++||+|.|+++.++.+...+..++.++++++..+.+.|++.|++.
T Consensus        50 p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaE  129 (511)
T TIGR00806        50 PYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTM  129 (511)
T ss_pred             HHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhcccchhHHHHH
Q 023846          169 ASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGHYNWRYAFWG  224 (276)
Q Consensus       169 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~w~~~~~~  224 (276)
                      |... ....++..++|+++|+++.+++..+..+|.++++++++++..+|||+-+..
T Consensus       130 A~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~L  184 (511)
T TIGR00806       130 AARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTL  184 (511)
T ss_pred             HHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence            9999 999999999999999999999999999999999999999558899965543

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK09952 shikimate transporter; Provisional

Probab=99.85  E-value=3.7e-20  Score=163.54  Aligned_cols=168  Identities=14%  Similarity=0.151  Sum_probs=136.2

Q ss_pred             ChhhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCcccccccc--CCCchhHHHHH-----HHHHHHHHHHH
Q 023846           46 TPGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDF--DLNNFQDGVLS-----SAFMVGLLVAS  118 (276)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~i~~  118 (276)
                      ++++.+...++.++..++|...++....                +.+.+++  +.++. .+++.     ++..++..+++
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~----------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~   81 (438)
T PRK09952         19 RARRAALGSFAGAVVDWYDFLLYGITAA----------------LVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGG   81 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHH
Confidence            3455677777888889999888765321                1344444  56655 45543     34455677899


Q ss_pred             hHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhH
Q 023846          119 PIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFW--------MIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTA  190 (276)
Q Consensus       119 ~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~  190 (276)
                      ++.|+++||+|||+++.++.++++++.+++++++++.        .++++|+++|++.|..++....++.|++|+++|++
T Consensus        82 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~  161 (438)
T PRK09952         82 VVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAF  161 (438)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcH
Confidence            9999999999999999999999999999999999987        58889999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhhc---------ccchhHHHHHhHHHHH
Q 023846          191 WLGVFYMCLPSGYAIGYVYGGWVG---------HYNWRYAFWGEAILMF  230 (276)
Q Consensus       191 ~~~~~~~~~~~g~~~g~~~~~~l~---------~~~w~~~~~~~~~~~~  230 (276)
                      ..+..+.+..+|.+++..+...+.         .+|||++|++.+++.+
T Consensus       162 ~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l  210 (438)
T PRK09952        162 YSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL  210 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence            999999999999988877665543         3799999998877643

>PRK11043 putative transporter; Provisional

Probab=99.85  E-value=1.2e-19  Score=158.50  Aligned_cols=154  Identities=18%  Similarity=0.277  Sum_probs=139.7

Q ss_pred             CccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 023846           88 PGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVG  167 (276)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  167 (276)
                      .+|.+.+++|.++.+.+++.+++.++..++++++|+++||+|||+++..+.++..++.+++.++++++.+++.|++.|++
T Consensus        28 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~  107 (401)
T PRK11043         28 AFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVG  107 (401)
T ss_pred             hHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence            44678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhcc
Q 023846          168 EASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKP  241 (276)
Q Consensus       168 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~  241 (276)
                      .+...+...+++.|++|++++++..+.......+|..++|.+++++. ..+||+.|++.+++.++..+..+++.|
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  182 (401)
T PRK11043        108 VCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKP  182 (401)
T ss_pred             hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCC
Confidence            88888888889999999999999999999889999999999999998 789999999988887766655554443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.84  E-value=1.6e-19  Score=157.81  Aligned_cols=177  Identities=15%  Similarity=0.039  Sum_probs=143.3

Q ss_pred             hhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCcccccc-ccCCCchhHHHHHHHHHHHHHHHHhHHHHhhh
Q 023846           48 GRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQG-DFDLNNFQDGVLSSAFMVGLLVASPIFASLAR  126 (276)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d  126 (276)
                      +|.+.+..+.+...+.....++...                 +.+.+ ++|++.+|.+++.+++.+++.++.++.|++.|
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~-----------------~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~D   95 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVT-----------------VNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVP   95 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666666666666666432                 46655 89999999999999999999999999999999


Q ss_pred             ccCChhhHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhh
Q 023846          127 SVNPFRLIGVGLTVWTLAVVGCGFS-----FSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPS  201 (276)
Q Consensus       127 ~~grr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~  201 (276)
                      |+|.|+++.++.++.++..++.+++     ++++.+++.|++.|++ +..++.....+++++|+++||+++|+.....++
T Consensus        96 r~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~  174 (462)
T PRK15034         96 IFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNL  174 (462)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhh
Confidence            9999999999999999999999887     8999999999999998 778899999999999999999999999777777


Q ss_pred             hhhHHHHHHHhhc-------------------ccchhHHHHHhHHHHHHHHHHHHhhccc
Q 023846          202 GYAIGYVYGGWVG-------------------HYNWRYAFWGEAILMFPFAVLGFVMKPL  242 (276)
Q Consensus       202 g~~~g~~~~~~l~-------------------~~~w~~~~~~~~~~~~~~~~~~~~~~~~  242 (276)
                      |..+++++...+.                   ..+||.++++..++.++..++.+++.++
T Consensus       175 G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~  234 (462)
T PRK15034        175 GVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMND  234 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            7765544443211                   2248888888888777776666666544

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.84  E-value=1.6e-19  Score=158.62  Aligned_cols=153  Identities=16%  Similarity=0.300  Sum_probs=141.2

Q ss_pred             ccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHhhhhh
Q 023846           93 QGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSF--SFWMIAICRMLVGVGEAS  170 (276)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~~~  170 (276)
                      ..+++++..+.+++.+.+..|+++++++.|+++||+|.|+++.++.++.++..++...+.  +++.+++.|+++|++.|.
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~  144 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV  144 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence            568999999999999999999999999999999999999999999999999999888776  456779999999999999


Q ss_pred             hhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-c-cchhHHHHHhHHHHHHHHHHHHhhcccccC
Q 023846          171 FISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-H-YNWRYAFWGEAILMFPFAVLGFVMKPLQLK  245 (276)
Q Consensus       171 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (276)
                      .+++...+.++|.|+++|++..++...+..+|.+++-+++|++. . .||++.|++.++++++..++++++..++|.
T Consensus       145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~  221 (466)
T KOG2532|consen  145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPS  221 (466)
T ss_pred             HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            99999999999999999999999999999999999999999998 5 899999999999999988888777544443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.84  E-value=3.4e-20  Score=166.83  Aligned_cols=150  Identities=17%  Similarity=0.310  Sum_probs=136.7

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHHHHh
Q 023846          101 FQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFID  180 (276)
Q Consensus       101 ~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~  180 (276)
                      .+.+++.+.+.++..+++++.|+++|++|||+.++++.+++.++.+++++++|+++++++|++.|+|.|......+.+++
T Consensus        89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s  168 (513)
T KOG0254|consen   89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYIS  168 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence            34589999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhcc--cchhHHHHHhHHHHHHHHHHHHhhcccccCCCCchh
Q 023846          181 DNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGH--YNWRYAFWGEAILMFPFAVLGFVMKPLQLKGFAPAE  251 (276)
Q Consensus       181 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (276)
                      |..|++.||...+..+....+|..++..++....+  ++||..+.+..+.+++..+. +++.||+|++..++.
T Consensus       169 Eiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g  240 (513)
T KOG0254|consen  169 EIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKG  240 (513)
T ss_pred             hcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcC
Confidence            99999999999999999999999999666666654  48999999999998888777 778899888765533

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.84  E-value=8.9e-20  Score=159.14  Aligned_cols=140  Identities=15%  Similarity=0.123  Sum_probs=125.4

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhh--------hhHHHHHHHHH
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFS--------FSFWMIAICRM  162 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~r~  162 (276)
                      ++.+++|.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++.++        .+++.+++.|+
T Consensus        41 ~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~  120 (399)
T PRK05122         41 YVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRL  120 (399)
T ss_pred             HHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999998888776655443        25678899999


Q ss_pred             HHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHH
Q 023846          163 LVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMF  230 (276)
Q Consensus       163 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~  230 (276)
                      ++|++.+...+....++.|++|+++|++++++.+....+|.++|+.+++.+. ..||++.+++.+++.+
T Consensus       121 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~  189 (399)
T PRK05122        121 LLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLAL  189 (399)
T ss_pred             HHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988 8899998887666543

>PRK10054 putative transporter; Provisional

Probab=99.84  E-value=2.3e-19  Score=156.39  Aligned_cols=153  Identities=16%  Similarity=0.159  Sum_probs=137.6

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEA  169 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~  169 (276)
                      +++++++|++..++|++.+.+.++..+++++.|+++||+|||++++++.++.+++.++..++++++.++++|++.|.+.+
T Consensus        32 ~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  111 (395)
T PRK10054         32 IYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYS  111 (395)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            46778899999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             hhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhhccc
Q 023846          170 SFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGHYNWRYAFWGEAILMFPFAVLGFVMKPL  242 (276)
Q Consensus       170 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~  242 (276)
                      ...+....+..|..|+++|++++++.+...++|.+++|.+++++...+|+.+|++.++..++..++..++.|+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~  184 (395)
T PRK10054        112 VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQR  184 (395)
T ss_pred             HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhc
Confidence            8888889999999999999999999999999999999999998877789999999888776665555554443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.84  E-value=8e-20  Score=161.26  Aligned_cols=164  Identities=13%  Similarity=0.124  Sum_probs=137.4

Q ss_pred             hhhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccccCCCchhHHHH-HHHHH-----HHHHHHHhH
Q 023846           47 PGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVL-SSAFM-----VGLLVASPI  120 (276)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~i~~~~  120 (276)
                      +++....+++..++.++|+..++..                 .|.+.++++.++.+.+.+ .+...     ++..+++++
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~   75 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFGFY-----------------ATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIV   75 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHH
Confidence            4456777888999999999998864                 479999999887776544 33222     223478899


Q ss_pred             HHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHH
Q 023846          121 FASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFW--------MIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWL  192 (276)
Q Consensus       121 ~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~  192 (276)
                      .|+++||+|||+.++.+.++.+++.++++++++++        .++++|+++|++.+...+....++.|++|+++|++++
T Consensus        76 ~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~  155 (434)
T PRK15075         76 LGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYT  155 (434)
T ss_pred             HHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHH
Confidence            99999999999999999999999999999999877        4688999999999999998899999999999999999


Q ss_pred             HHHHHHhhhhhhHHHHHHHhhc---------ccchhHHHHHhHH
Q 023846          193 GVFYMCLPSGYAIGYVYGGWVG---------HYNWRYAFWGEAI  227 (276)
Q Consensus       193 ~~~~~~~~~g~~~g~~~~~~l~---------~~~w~~~~~~~~~  227 (276)
                      ++...+.++|..+++.+++.+.         .+|||++|++..+
T Consensus       156 ~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        156 SWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            9999988888888887777652         5799999997544

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.83  E-value=1.5e-19  Score=159.72  Aligned_cols=179  Identities=15%  Similarity=0.082  Sum_probs=147.0

Q ss_pred             hhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhc
Q 023846           48 GRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARS  127 (276)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~  127 (276)
                      ++.+..+.+.+...+.++..+..                 .+|.+++ +|++..+.+++.+++.++..+++++.|+++||
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~-----------------~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr   87 (438)
T TIGR00712        26 WQVFLGIFFGYAAYYLVRKNFAL-----------------AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDR   87 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHh-----------------hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhc
Confidence            34445555556666665554443                 2256665 59999999999999999999999999999999


Q ss_pred             cCChhhHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhh
Q 023846          128 VNPFRLIGVGLTVWTLAVVGCGFS----FSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGY  203 (276)
Q Consensus       128 ~grr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~  203 (276)
                      +|||+.+.++.++.+++.+++++.    .+++.+.+.|++.|++.+..++.....+.|++|+++|++++++++....+|.
T Consensus        88 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~  167 (438)
T TIGR00712        88 SNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGG  167 (438)
T ss_pred             cCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHh
Confidence            999999999999999988877664    4677888999999999999888889999999999999999999999999999


Q ss_pred             hHHHHHHHhhc--ccchhHHHHHhHHHHHHHHHHHHhhccccc
Q 023846          204 AIGYVYGGWVG--HYNWRYAFWGEAILMFPFAVLGFVMKPLQL  244 (276)
Q Consensus       204 ~~g~~~~~~l~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (276)
                      .+++.+.+...  ..+||+.|++.+++.++..+..+++.||++
T Consensus       168 ~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~  210 (438)
T TIGR00712       168 GIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTP  210 (438)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence            99887766544  579999999999888777666666656543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK12382 putative transporter; Provisional

Probab=99.83  E-value=3.5e-19  Score=155.07  Aligned_cols=138  Identities=16%  Similarity=0.180  Sum_probs=121.6

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHH---h-----hhhhHHHHHHHHH
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGC---G-----FSFSFWMIAICRM  162 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~r~  162 (276)
                      ++.+++|+|..+.|++.+.+.+++.++++++|+++||+|||+++..+.+...++.+..   .     ..++++.++++|+
T Consensus        41 ~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~  120 (392)
T PRK12382         41 FVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRL  120 (392)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999888776654322   2     1358899999999


Q ss_pred             HHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHH
Q 023846          163 LVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAIL  228 (276)
Q Consensus       163 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~  228 (276)
                      ++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|++++.+. ..||++.+.+..++
T Consensus       121 l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~  187 (392)
T PRK12382        121 ILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVL  187 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence            9999999988988999999999999999999999999999999999999988 78999877765444

>PRK10133 L-fucose transporter; Provisional

Probab=99.83  E-value=4.4e-19  Score=156.52  Aligned_cols=126  Identities=21%  Similarity=0.265  Sum_probs=115.8

Q ss_pred             CccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHH
Q 023846           88 PGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGC---GFSFSFWMIAICRMLV  164 (276)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~r~l~  164 (276)
                      .+|.+++++|+++.+.+++.+.+.+++.+++++.|++.||+|||+++.++.++++++.+++   .++++++.++++|+++
T Consensus        48 ~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~  127 (438)
T PRK10133         48 LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFII  127 (438)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            3479999999999999999999999999999999999999999999999999999999875   4678999999999999


Q ss_pred             HhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhh
Q 023846          165 GVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWV  213 (276)
Q Consensus       165 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  213 (276)
                      |+|.+...+....++.++.|+++|...+++.+....+|..+++.+++.+
T Consensus       128 G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        128 AAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             HHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987777777789999999999999999887643

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.83  E-value=3.8e-19  Score=155.26  Aligned_cols=153  Identities=14%  Similarity=0.205  Sum_probs=139.6

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEA  169 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~  169 (276)
                      +++++++|++..+.|++.+.+.++..+.+++.|+++||+|||+++.++.++.+++.+++.+.++++.+++.|++.|++.+
T Consensus        35 ~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~  114 (400)
T PRK11646         35 IRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGT  114 (400)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhhccc
Q 023846          170 SFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGHYNWRYAFWGEAILMFPFAVLGFVMKPL  242 (276)
Q Consensus       170 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~  242 (276)
                      ...+...+++.+++|+++|++++++.+....+|..+||.+++++...+||+.|++.+++.++..++..+..|+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~  187 (400)
T PRK11646        115 LFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPA  187 (400)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            8889999999999999999999999999999999999999999887799999999888776665554444454

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.83  E-value=3.8e-20  Score=169.44  Aligned_cols=152  Identities=19%  Similarity=0.361  Sum_probs=135.2

Q ss_pred             CccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhh---------------
Q 023846           88 PGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSF---------------  152 (276)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~---------------  152 (276)
                      +++.++++|+++..+.|++.+.+.++++++.++.|++.||+|||+.+.++.++++++.+++++.+               
T Consensus        55 ~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~  134 (633)
T TIGR00805        55 SLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSST  134 (633)
T ss_pred             hchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccc
Confidence            45799999999999999999999999999999999999999999999999999999999888764               


Q ss_pred             ------------------------------------hHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHH
Q 023846          153 ------------------------------------SFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFY  196 (276)
Q Consensus       153 ------------------------------------~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~  196 (276)
                                                          .+..++++|+++|+|.+..++...+++.|++|+++|++++++++
T Consensus       135 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~  214 (633)
T TIGR00805       135 GNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILE  214 (633)
T ss_pred             ccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHH
Confidence                                                24567889999999999999999999999999999999999999


Q ss_pred             HHhhhhhhHHHHHHHhhc-cc----------------------chhHHHHHhHHHHHHHHHHHHhh
Q 023846          197 MCLPSGYAIGYVYGGWVG-HY----------------------NWRYAFWGEAILMFPFAVLGFVM  239 (276)
Q Consensus       197 ~~~~~g~~~g~~~~~~l~-~~----------------------~w~~~~~~~~~~~~~~~~~~~~~  239 (276)
                      ....+|.++|+++++++. .+                      +|+..|++.+++.++..+.++++
T Consensus       215 ~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~  280 (633)
T TIGR00805       215 SIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFF  280 (633)
T ss_pred             HHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999876 22                      27778888888777766554443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.82  E-value=1.2e-18  Score=152.31  Aligned_cols=155  Identities=20%  Similarity=0.235  Sum_probs=135.8

Q ss_pred             CccccccccCCCchh-----HHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 023846           88 PGTGIQGDFDLNNFQ-----DGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRM  162 (276)
Q Consensus        88 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  162 (276)
                      .+|.+.+++|++..+     .+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++.+.++++.+++.|+
T Consensus        36 ~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (408)
T PRK09874         36 FLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRA  115 (408)
T ss_pred             hHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            347788889888554     488899999999999999999999999999999999999999998889999999999999


Q ss_pred             HHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhcc
Q 023846          163 LVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKP  241 (276)
Q Consensus       163 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~  241 (276)
                      +.|++.+ ..+....++.+.+|+++|++++++......+|..++|.+++.+. ..+||+.|++.+++.++..+..+++.|
T Consensus       116 ~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (408)
T PRK09874        116 LLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIR  194 (408)
T ss_pred             HHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999855 55777888999999999999999999999999999999999988 789999999998887776666665555


Q ss_pred             cc
Q 023846          242 LQ  243 (276)
Q Consensus       242 ~~  243 (276)
                      ++
T Consensus       195 ~~  196 (408)
T PRK09874        195 EN  196 (408)
T ss_pred             cC
Confidence            54

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.82  E-value=1.3e-19  Score=163.54  Aligned_cols=157  Identities=18%  Similarity=0.246  Sum_probs=139.5

Q ss_pred             cccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhh
Q 023846           94 GDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFIS  173 (276)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~  173 (276)
                      +.+..+.....+..+++.+|.++|++++|+++||+|||+++++++++..++.++.++++|++.+++.|++.|++.++...
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~  190 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT  190 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence            55667888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhhcccccCCCCchhhh
Q 023846          174 LAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGHYNWRYAFWGEAILMFPFAVLGFVMKPLQLKGFAPAESK  253 (276)
Q Consensus       174 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (276)
                      ....++.|++++++|+.+..+ ......++.+++..++++.. +|||.+++..++.++.+++ +++.||++++...+.+.
T Consensus       191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~g~~  267 (521)
T KOG0255|consen  191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-DWRWLFWIISIPSGLFLLL-WFLPPESPRWLLSKGRI  267 (521)
T ss_pred             HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHH-HHccCcChHHHHHcCch
Confidence            999999999999999999999 77777777888887777765 8999999999988766655 55667888876544443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.82  E-value=9.5e-19  Score=153.12  Aligned_cols=150  Identities=19%  Similarity=0.181  Sum_probs=134.6

Q ss_pred             CccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHH
Q 023846           88 PGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGF---SFSFWMIAICRMLV  164 (276)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~r~l~  164 (276)
                      .+|.+++++|++..+.|++.+.+.+++.+++++.|++.||+|||+++.++.++++++.+++..   .++++.+++.|++.
T Consensus        25 l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~  104 (410)
T TIGR00885        25 MVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFIL  104 (410)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            458999999999999999999999999999999999999999999999999999999887644   35899999999999


Q ss_pred             HhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-c--------------------------cc
Q 023846          165 GVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-H--------------------------YN  217 (276)
Q Consensus       165 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~--------------------------~~  217 (276)
                      |+|.|...+....++.+..|+++|++.+++.+...++|..++|.+++.+. .                          .+
T Consensus       105 G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (410)
T TIGR00885       105 TAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLAS  184 (410)
T ss_pred             HhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988774 1                          35


Q ss_pred             hhHHHHHhHHHHHHHHHHHH
Q 023846          218 WRYAFWGEAILMFPFAVLGF  237 (276)
Q Consensus       218 w~~~~~~~~~~~~~~~~~~~  237 (276)
                      ||++|++.+++.++..++..
T Consensus       185 w~~~fl~~a~~~~~~~~~~~  204 (410)
T TIGR00885       185 VQTPYMIIGAVVLAVALLIM  204 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999887766554443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.81  E-value=1.2e-18  Score=150.49  Aligned_cols=155  Identities=11%  Similarity=0.128  Sum_probs=131.6

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIG-VGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEA  169 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~  169 (276)
                      ++++++|.+..+.|++.+.+.+...+.+++.|+++||+|||+.++ .+..+.+++.++++++++++.+++.|++.|.+.+
T Consensus        23 ~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  102 (375)
T TIGR00899        23 FLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFAS  102 (375)
T ss_pred             HHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhh
Confidence            467899999999999999999999999999999999999988765 4566666777888889999999999999998888


Q ss_pred             hhhhcHHHHHhhcCcchhhhHH--HHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhcccccC
Q 023846          170 SFISLAAPFIDDNAPVAKKTAW--LGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQLK  245 (276)
Q Consensus       170 ~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (276)
                      ...+...+++.|+.|+++|++.  .+......++|.++||.+++.+. ..+||+.|++.+++.++..++.+++.||.++
T Consensus       103 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~  181 (375)
T TIGR00899       103 TANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPR  181 (375)
T ss_pred             hhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence            8888888888998887777654  57888888999999999999998 7899999999988877776666665666543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.81  E-value=9.5e-19  Score=156.06  Aligned_cols=149  Identities=16%  Similarity=0.144  Sum_probs=129.7

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhc-cCChhhHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHhh
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARS-VNPFRLIGVGLTVWTLAVVGCGFSFSFWM-IAICRMLVGVG  167 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~l~G~~  167 (276)
                      .++.+++|++..+.+++.+.+.....+..+++|+++|| +|||+++.++.++++++.++++++.+... ++++|+++|+|
T Consensus        39 ~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig  118 (489)
T PRK10207         39 VFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVG  118 (489)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhc
Confidence            47788899999999999999998888889999999999 99999999999999999999998876444 55899999999


Q ss_pred             hhhhhhcHHHHHhhcCcch--hhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhh
Q 023846          168 EASFISLAAPFIDDNAPVA--KKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVM  239 (276)
Q Consensus       168 ~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~  239 (276)
                      .|...+...+++.|.+|++  +|++++++++.+.++|.++||.+++++. +.|||+.|++.++ .++..++.+.+
T Consensus       119 ~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i-~~~~~~~~~~~  192 (489)
T PRK10207        119 NGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA-GLIIALLVYFA  192 (489)
T ss_pred             cccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH-HHHHHHHHHHH
Confidence            9999999999999999877  4578999999999999999999999999 8899999998655 33333333333

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.80  E-value=2.4e-18  Score=149.34  Aligned_cols=127  Identities=18%  Similarity=0.252  Sum_probs=120.8

Q ss_pred             CccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 023846           88 PGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVG  167 (276)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  167 (276)
                      .+|.+.+++|.+..+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|++
T Consensus        28 ~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~  107 (381)
T PRK03633         28 LVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIG  107 (381)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            44788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc
Q 023846          168 EASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG  214 (276)
Q Consensus       168 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  214 (276)
                      .+...+.....+.+..++++|++++++++.+.++|..+||.+++.+.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  154 (381)
T PRK03633        108 CAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVS  154 (381)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99998888888889999999999999999999999999999999987

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.80  E-value=1.5e-18  Score=151.18  Aligned_cols=151  Identities=17%  Similarity=0.160  Sum_probs=129.0

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEA  169 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~  169 (276)
                      +.+.++++.+..+.+++.+.+.+++.++++++|+++||+|||+++.++.++.+++.+++.++.+.   ++.|+++|++.+
T Consensus        27 ~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a  103 (393)
T PRK11195         27 IALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAA  103 (393)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999888877776664   788999999999


Q ss_pred             hhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhhccccc
Q 023846          170 SFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGHYNWRYAFWGEAILMFPFAVLGFVMKPLQL  244 (276)
Q Consensus       170 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (276)
                      ...|...+++.|++|+++|++++++.+....+|.++||.+++++....|+..+++.+...++. ++..+..|+++
T Consensus       104 ~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~-~~~~~~l~~~~  177 (393)
T PRK11195        104 AYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLA-ALFNLFIPRLG  177 (393)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence            999999999999999999999999999999999999999999998545777777665544333 33334455543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.80  E-value=1.2e-18  Score=155.52  Aligned_cols=153  Identities=18%  Similarity=0.119  Sum_probs=131.9

Q ss_pred             CccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 023846           88 PGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVG  167 (276)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  167 (276)
                      +++.+..++|-+ ....|+.+.+.++..++.++.|+++|.||||+.++.+.++..+|.++++.++|...++++..+.|+|
T Consensus        66 ~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~Gvg  144 (599)
T PF06609_consen   66 ILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVG  144 (599)
T ss_pred             HHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHh
Confidence            457888999865 5788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhh-ccc
Q 023846          168 EASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVM-KPL  242 (276)
Q Consensus       168 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~-~~~  242 (276)
                      .|.... ....++|..|.|.|+...++......+...+++.++..+. +.+|||.|++.+++..+.+++.+++ .|+
T Consensus       145 aG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP  220 (599)
T PF06609_consen  145 AGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPP  220 (599)
T ss_pred             hHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCC
Confidence            777664 4566899999999998888777776666667888887777 7899999999999887776665544 443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PTZ00207 hypothetical protein; Provisional

Probab=99.80  E-value=4.5e-18  Score=152.69  Aligned_cols=149  Identities=14%  Similarity=0.128  Sum_probs=129.0

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhh------hhHHHHHHHHHH
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFS------FSFWMIAICRML  163 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~r~l  163 (276)
                      +.+++++|++..+.+++.+.. ....+++++.|++.||+|+|+++.++.++..++.++++++      .+++.+++.|++
T Consensus        51 ~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l  129 (591)
T PTZ00207         51 GAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGL  129 (591)
T ss_pred             HHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHH
Confidence            688999999999999988763 4455678889999999999999999999999999999987      689999999999


Q ss_pred             HHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhH-HHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhhcc
Q 023846          164 VGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAI-GYVYGGWVGHYNWRYAFWGEAILMFPFAVLGFVMKP  241 (276)
Q Consensus       164 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~  241 (276)
                      .|+|.+...+.+...+.+++| ++||++.|+...+..+|.++ +++..+++. .+|++.|++.+++.++..++.+++.+
T Consensus       130 ~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll~~~~vr  206 (591)
T PTZ00207        130 MTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGILAIVFMR  206 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhhee
Confidence            999999999999999999997 78999999999999999986 555555554 46888899988888887777776643

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.79  E-value=3.7e-18  Score=145.48  Aligned_cols=150  Identities=27%  Similarity=0.445  Sum_probs=139.5

Q ss_pred             ccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 023846           89 GTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGE  168 (276)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  168 (276)
                      +|.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||+.+.++.++..++.+++.+.++++.+++.|++.|++.
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~  101 (352)
T cd06174          22 LPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGG  101 (352)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHccc
Confidence            46788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHh
Q 023846          169 ASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFV  238 (276)
Q Consensus       169 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~  238 (276)
                      +...+...+++.|++|+++|++.+++.+....+|..++|.+++.+. ..+||+.+++.+++.++..+...+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (352)
T cd06174         102 GALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLF  172 (352)
T ss_pred             ccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998 778999999988877666555443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.78  E-value=7.5e-18  Score=150.07  Aligned_cols=143  Identities=14%  Similarity=0.109  Sum_probs=130.4

Q ss_pred             ccccc--cCCCchhHHHHHHHHHHHHHHHHhHHHHhhhc-cCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 023846           91 GIQGD--FDLNNFQDGVLSSAFMVGLLVASPIFASLARS-VNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVG  167 (276)
Q Consensus        91 ~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  167 (276)
                      ++.++  +|++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++.+++++++.++++|++.|+|
T Consensus        36 yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g  115 (475)
T TIGR00924        36 YLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVG  115 (475)
T ss_pred             HHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhc
Confidence            45555  89999999999999999999999999999999 8999999999999999999999998889999999999999


Q ss_pred             hhhhhhcHHHHHhhcCcchh---hhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHH
Q 023846          168 EASFISLAAPFIDDNAPVAK---KTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFA  233 (276)
Q Consensus       168 ~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~  233 (276)
                      .|...+...+++++++|+++   |++++++++.+.++|.++||.+++++. +.||++.|++.++..++..
T Consensus       116 ~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~  185 (475)
T TIGR00924       116 SGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGL  185 (475)
T ss_pred             cccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence            99999999999999998754   888999999999999999999999998 7899999999876554443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00896 CynX cyanate transporter

Probab=99.78  E-value=9.6e-18  Score=144.14  Aligned_cols=142  Identities=20%  Similarity=0.217  Sum_probs=127.6

Q ss_pred             CCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 023846           87 TPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGV  166 (276)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~  166 (276)
                      |.+|.+.+++|++.++.+++.+.+.++..+++++.|++.||+|||+++.++.++.+++.+.+ .+++.+.+++.|++.|+
T Consensus        21 ~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~   99 (355)
T TIGR00896        21 PLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGV   99 (355)
T ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999998888888777 77899999999999999


Q ss_pred             hhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-cc--chhHHHHHhHHHHH
Q 023846          167 GEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HY--NWRYAFWGEAILMF  230 (276)
Q Consensus       167 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~--~w~~~~~~~~~~~~  230 (276)
                      +.+...+....++.|++| ++|++++++++....+|..+++.+++.+. ..  +||+.|.+.+++.+
T Consensus       100 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~  165 (355)
T TIGR00896       100 GIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPAL  165 (355)
T ss_pred             HHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            999988888888999886 68999999999999999999999988887 33  49999887766543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.78  E-value=3.2e-18  Score=144.07  Aligned_cols=177  Identities=16%  Similarity=0.185  Sum_probs=149.1

Q ss_pred             hHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhcc
Q 023846           49 RLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSV  128 (276)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~  128 (276)
                      +.+.+..+....+++.-+.++...                 +.+.+++|+|+.|.+++.++..+...+..++.|.+.||+
T Consensus        14 ~~L~~S~~af~v~F~VW~l~s~l~-----------------~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf   76 (417)
T COG2223          14 RNLWLSTLAFDVGFMVWTLFSPLG-----------------VFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF   76 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----------------hhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc
Confidence            444444444445555444555433                 578899999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhH
Q 023846          129 NPFRLIGVGLTVWTLAVVGCGFSFS---FWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAI  205 (276)
Q Consensus       129 grr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~  205 (276)
                      |.|++..++.++..+-++..+++.+   ++++++.+.+.|++ |..++....+++.++|++++|.++|++. ..++|..+
T Consensus        77 GgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av  154 (417)
T COG2223          77 GGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAV  154 (417)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHH
Confidence            9999999999999999998888864   45999999999998 7777888999999999999999999999 89999999


Q ss_pred             HHHHHHhhc-ccc---hhHHHHHhHHHHHHHHHHHHhhccccc
Q 023846          206 GYVYGGWVG-HYN---WRYAFWGEAILMFPFAVLGFVMKPLQL  244 (276)
Q Consensus       206 g~~~~~~l~-~~~---w~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (276)
                      ...++..+. ..+   |+.+..+..+..++..+..++...+.+
T Consensus       155 ~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p  197 (417)
T COG2223         155 AQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVP  197 (417)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence            888888887 667   999999988888887777777754443

>TIGR00897 2A0118 polyol permease family

Probab=99.78  E-value=1.7e-17  Score=145.08  Aligned_cols=152  Identities=13%  Similarity=0.244  Sum_probs=125.0

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHh---h-hhhHHHHHHHHHHHH
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCG---F-SFSFWMIAICRMLVG  165 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~r~l~G  165 (276)
                      +.+.+++|.+..+.+++.+.+.++..+++++.|++.||+|||+++..+.++.+++.+++.   + ..+++.+++.|++.|
T Consensus        37 ~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G  116 (402)
T TIGR00897        37 SPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRG  116 (402)
T ss_pred             HHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHH
Confidence            455688999999999999999999999999999999999999999999999988776542   3 257888899999999


Q ss_pred             hhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhh-hHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhcc
Q 023846          166 VGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGY-AIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKP  241 (276)
Q Consensus       166 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~  241 (276)
                      ++.+...+.....+.+++|+++|++++|+.+...++|. +++|.+++++. ..||+..++.......+..++.+++.+
T Consensus       117 ~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  194 (402)
T TIGR00897       117 LGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNK  194 (402)
T ss_pred             cchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccC
Confidence            99888888888889999999999999999999999997 57999988887 778776666554443333333333333

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=2.5e-18  Score=143.26  Aligned_cols=149  Identities=22%  Similarity=0.251  Sum_probs=139.3

Q ss_pred             cccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhh
Q 023846           94 GDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFIS  173 (276)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~  173 (276)
                      .+.+-+.+++|++.+...+.+.+.+++.|.+.||+|+|..+++|+.++.++.+++++..+++.+++.|.++|+|.+...+
T Consensus        99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t  178 (464)
T KOG3764|consen   99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT  178 (464)
T ss_pred             cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence            34556778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHhhcCcch-hhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhccc
Q 023846          174 LAAPFIDDNAPVA-KKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPL  242 (276)
Q Consensus       174 ~~~~~i~~~~~~~-~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~  242 (276)
                      ...+++++.+|.+ +|++++|+.-.+.++|..+||++||.+. ..|.+.+|++.+++.++-..+.++..+.
T Consensus       179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p  249 (464)
T KOG3764|consen  179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEP  249 (464)
T ss_pred             hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCc
Confidence            9999999999976 5899999999999999999999999999 8899999999999998888877777544

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.75  E-value=2.2e-17  Score=146.84  Aligned_cols=154  Identities=18%  Similarity=0.202  Sum_probs=141.6

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHhhh
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAIC-RMLVGVGE  168 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-r~l~G~~~  168 (276)
                      +.++++|+.+..+++|+.++......+.+++.+.+.||+|.|.+.++|.++..++.++.+++++++++++. -++.|+|.
T Consensus        70 ~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~  149 (509)
T KOG2504|consen   70 EELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGL  149 (509)
T ss_pred             HHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccc
Confidence            68999999999999999999999999999999999999999999999999999999999999999988876 58899999


Q ss_pred             hhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhccccc
Q 023846          169 ASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQL  244 (276)
Q Consensus       169 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (276)
                      |..+......+..+|+ ++|+.+.|+...+..+|.++-|.+..++. ..|||+.+++.+.+.+-+++.....+|...
T Consensus       150 ~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~  225 (509)
T KOG2504|consen  150 GLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSP  225 (509)
T ss_pred             hhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence            9999999999997776 99999999999999999999888888888 999999999999998777777777777443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.75  E-value=2.3e-17  Score=144.87  Aligned_cols=153  Identities=12%  Similarity=-0.015  Sum_probs=131.4

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHH
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGF-----SFSFWMIAICRMLV  164 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~r~l~  164 (276)
                      |.+.++++.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+..+.     .++++.+++.|++.
T Consensus        41 ~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  120 (417)
T PRK10489         41 PVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWD  120 (417)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            6777888889999999999999999999999999999999999999988877776655432     46788899999999


Q ss_pred             HhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhcccc
Q 023846          165 GVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQ  243 (276)
Q Consensus       165 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  243 (276)
                      |++.+...+...+++.++.|+++|+++.++.+....+|..+||.+++.+. ..+|++.|++.++..++..++.+ ..|+.
T Consensus       121 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~  199 (417)
T PRK10489        121 GFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLL-RLPAL  199 (417)
T ss_pred             HHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-hCCCC
Confidence            99988888888999999999999999999999999999999999999988 77999999988776655544433 34443

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.75  E-value=1.4e-17  Score=145.44  Aligned_cols=145  Identities=20%  Similarity=0.201  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHhhhhhhhhcHHHHHh
Q 023846          104 GVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFS---FSFWMIAICRMLVGVGEASFISLAAPFID  180 (276)
Q Consensus       104 ~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~~~~~~~~~~~i~  180 (276)
                      +.+.+++.+|.++|+++.++++||+|||..+.+..++..++.+++.++   +++.+++++|++.|+..|......+.++.
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~  142 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLT  142 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            667899999999999999999999999999999988887777665554   68899999999999999999999999999


Q ss_pred             hcCcchhhhHHHHHHHHHhhhhhhHHHHHHH--hhc-ccchhHHHHHhHHHHHHHHHHHHhhcccccCCCCc
Q 023846          181 DNAPVAKKTAWLGVFYMCLPSGYAIGYVYGG--WVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQLKGFAP  249 (276)
Q Consensus       181 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~--~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (276)
                      |..|++.||....+.+.+..+|..++..++.  .+. ...|.+.+.+..+++++.+ +.+.+.||+|++.-.
T Consensus       143 E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l-~~l~~~PESPk~Ll~  213 (485)
T KOG0569|consen  143 EISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQL-ALLPFLPESPKYLLI  213 (485)
T ss_pred             hcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHH-HHHhcCCCCcchHHH
Confidence            9999999999999999999999999976653  233 6679999999888765544 445567999987543

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.75  E-value=1e-17  Score=138.87  Aligned_cols=118  Identities=19%  Similarity=0.303  Sum_probs=108.5

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHH
Q 023846           97 DLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAA  176 (276)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~  176 (276)
                      +.+..-.|++.+.+.++.+++++.+|.++||+|||+++.+|++..++...+.+++.|+..+++.|++.|+.-|-. .+..
T Consensus        64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl-~v~r  142 (451)
T KOG2615|consen   64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNL-SVIR  142 (451)
T ss_pred             cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch-HHHH
Confidence            345556799999999999999999999999999999999999999999999999999977777899999986655 5578


Q ss_pred             HHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhcc
Q 023846          177 PFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGH  215 (276)
Q Consensus       177 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  215 (276)
                      ++++|.+++++|+.+++.+++..++|.++||.+|+++..
T Consensus       143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            999999999999999999999999999999999999973

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.74  E-value=2e-16  Score=137.91  Aligned_cols=154  Identities=8%  Similarity=0.108  Sum_probs=119.1

Q ss_pred             cccccccCCCchhHHHHHHHHHH-HHHHHHhHHHHhhhccCChhhH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMV-GLLVASPIFASLARSVNPFRLI-GVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVG  167 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  167 (276)
                      +++.+++|++.+++|++.+...+ +..++.++.++ .||+|||+.+ ..+.++.+++..+.+++++++.+++.+.+.|..
T Consensus        40 ~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  118 (393)
T PRK15011         40 IFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSF  118 (393)
T ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            35788999999999999876655 55556655566 9999999875 455666667777788889998887666555555


Q ss_pred             hhhhhhcHHHHHhhcCcchhh--hHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhccccc
Q 023846          168 EASFISLAAPFIDDNAPVAKK--TAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQL  244 (276)
Q Consensus       168 ~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (276)
                      .+...+....++.++.+++.|  +...++.+.+.++|.++||++++.+. +.|||+.|++.++..++..+..+++.|+.+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~  198 (393)
T PRK15011        119 GSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMR  198 (393)
T ss_pred             HHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence            567778888888888776655  34557888899999999999999998 889999999998887777666666666653

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.74  E-value=3.6e-17  Score=121.00  Aligned_cols=136  Identities=25%  Similarity=0.354  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcch
Q 023846          107 SSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVA  186 (276)
Q Consensus       107 ~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~  186 (276)
                      .+.+.++..+++++.|++.||+|||+.+..+..+..++.+...+.++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            34567788899999999999999999999999999999888888899999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhccc
Q 023846          187 KKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPL  242 (276)
Q Consensus       187 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~  242 (276)
                      +|++..++.+....+|..++|.+.+.+. ..+|++.|++.+++.++..+..+++.||
T Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999999999999999999999988 7899999999888877776666655543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.74  E-value=1.9e-16  Score=141.92  Aligned_cols=144  Identities=15%  Similarity=0.193  Sum_probs=123.5

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhc-cCChhhHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhh
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARS-VNPFRLIGVGLTVWTLAVVGCGFSF-SFWMIAICRMLVGVG  167 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~  167 (276)
                      .++.+++|++..+.+++.+.+........+++|+++|| +|||+++.++.++.+++.+++++++ +.+.+.++++++|++
T Consensus        46 ~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig  125 (500)
T PRK09584         46 VYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVG  125 (500)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            46778999999999888888776666777899999999 5999999999999999998888874 566777889999999


Q ss_pred             hhhhhhcHHHHHhhcCcchh--hhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHH
Q 023846          168 EASFISLAAPFIDDNAPVAK--KTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFA  233 (276)
Q Consensus       168 ~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~  233 (276)
                      .|...+...+++.|++|+++  |..++++++.+.++|.++||.+++++. +.|||+.|++.++..++..
T Consensus       126 ~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~  194 (500)
T PRK09584        126 NGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITV  194 (500)
T ss_pred             hhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            99999999999999998643  556889999999999999999999998 7899999999876544443

>TIGR00901 2A0125 AmpG-related permease

Probab=99.71  E-value=2.2e-16  Score=135.76  Aligned_cols=155  Identities=10%  Similarity=0.037  Sum_probs=126.8

Q ss_pred             CCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhcc-----CChhh-HHHHHHHHHHHHHHHhhh---hhHHHH
Q 023846           87 TPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSV-----NPFRL-IGVGLTVWTLAVVGCGFS---FSFWMI  157 (276)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----grr~~-~~~~~~~~~~~~~~~~~~---~~~~~~  157 (276)
                      +.+|.+.+|+|++.++.+++... .+...+ .+++|+++||+     |||+. ++.+.++.++.....++.   .+++.+
T Consensus         9 ~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l   86 (356)
T TIGR00901         9 NTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLL   86 (356)
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHH
Confidence            34578899999999999999655 444554 99999999998     89887 466777777776666666   466667


Q ss_pred             HHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccc--------hhHHHHHhHHH
Q 023846          158 AICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYN--------WRYAFWGEAIL  228 (276)
Q Consensus       158 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~--------w~~~~~~~~~~  228 (276)
                      ....++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+. ..+        ||++|++.++.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~  166 (356)
T TIGR00901        87 AGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALL  166 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHH
Confidence            777888888888888999999999999999999999999999999999999998887 666        99999999887


Q ss_pred             HHHHHHHHHhhcccc
Q 023846          229 MFPFAVLGFVMKPLQ  243 (276)
Q Consensus       229 ~~~~~~~~~~~~~~~  243 (276)
                      .++..+..++..||+
T Consensus       167 ~l~~~~~~~~~~~e~  181 (356)
T TIGR00901       167 ILPGLLVTLFLAKEP  181 (356)
T ss_pred             HHHHHHHHHHhccCC
Confidence            766555545445554

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.71  E-value=7.4e-20  Score=162.17  Aligned_cols=154  Identities=19%  Similarity=0.319  Sum_probs=135.6

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHhhhhhhhhcHH
Q 023846          100 NFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSF---SFWMIAICRMLVGVGEASFISLAA  176 (276)
Q Consensus       100 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~r~l~G~~~~~~~~~~~  176 (276)
                      ..+.+++.+...+|..+|++++|+++||+|||+.+.++.++..++.++.++++   +++.+.++|++.|++.|...+...
T Consensus        45 ~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~  124 (451)
T PF00083_consen   45 SLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSP  124 (451)
T ss_pred             HHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34678999999999999999999999999999999999999999999999999   999999999999999999999999


Q ss_pred             HHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc----ccchhHHHHHhHHHHHHHHHHHHhhcccccCCCCchhh
Q 023846          177 PFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG----HYNWRYAFWGEAILMFPFAVLGFVMKPLQLKGFAPAES  252 (276)
Q Consensus       177 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~----~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (276)
                      .++.|..|+++|++..++.+.+..+|..++..++..+.    ..+||+.+++.+++.++..+ ..++.||+|++...+++
T Consensus       125 ~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~-~~~~~pESP~wL~~~~~  203 (451)
T PF00083_consen  125 IYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLL-LRFFLPESPRWLLSKGR  203 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccceeccccc
Confidence            99999999999999999999999999998887765554    24699999999888765544 34567999988765554


Q ss_pred             hc
Q 023846          253 KK  254 (276)
Q Consensus       253 ~~  254 (276)
                      .+
T Consensus       204 ~~  205 (451)
T PF00083_consen  204 DE  205 (451)
T ss_pred             cc
Confidence            43

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.71  E-value=4e-16  Score=137.94  Aligned_cols=141  Identities=16%  Similarity=0.165  Sum_probs=118.8

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhcc-CChhhHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhh
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSV-NPFRLIGVGLTVWTLAVVGCGFSF-SFWMIAICRMLVGVGE  168 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~  168 (276)
                      ++.+++|++..+.+.+.+.+.....++.+++|+++||+ |||+++.++.++.+++.++++..+ +...+.++..+.++|.
T Consensus        35 yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~  114 (493)
T PRK15462         35 YLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGY  114 (493)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc
Confidence            56677899999999999999999999999999999999 999999999999999887776543 2233444555555667


Q ss_pred             hhhhhcHHHHHhhcCcch--hhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHH
Q 023846          169 ASFISLAAPFIDDNAPVA--KKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFP  231 (276)
Q Consensus       169 ~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~  231 (276)
                      |...+...++++|.+|++  +|.+++++.+...++|..++|.+.+++. ..||++.|.+.++..++
T Consensus       115 G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l  180 (493)
T PRK15462        115 GLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIA  180 (493)
T ss_pred             ccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHH
Confidence            777788889999999975  7999999999999999999999999998 88999999987664433

>TIGR00889 2A0110 nucleoside transporter

Probab=99.70  E-value=1e-15  Score=134.50  Aligned_cols=145  Identities=15%  Similarity=0.232  Sum_probs=125.7

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHhhhhhhhhcH
Q 023846          100 NFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSF----SFWMIAICRMLVGVGEASFISLA  175 (276)
Q Consensus       100 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~r~l~G~~~~~~~~~~  175 (276)
                      .+..+...++..++.+++.++.|+++||+|+|+++.++.++.+++..+.....    +++.+++.+++.|++.+...+..
T Consensus       250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~  329 (418)
T TIGR00889       250 VKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISG  329 (418)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            35679999999999999999999999999999999999999988876666532    34667788999999999888998


Q ss_pred             HHHHhhcCcchhhhHHHHHHH-HHhhhhhhHHHHHHHhhc-c------cchhHHHHHhHHHHHHHHHHHHhhccccc
Q 023846          176 APFIDDNAPVAKKTAWLGVFY-MCLPSGYAIGYVYGGWVG-H------YNWRYAFWGEAILMFPFAVLGFVMKPLQL  244 (276)
Q Consensus       176 ~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~-~------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (276)
                      ..++.|.+|+++|++++|+.+ ....+|.++||+++|++. .      .||+..|++.+++.++..++.+++.+++.
T Consensus       330 ~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~  406 (418)
T TIGR00889       330 SVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH  406 (418)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            999999999999999999997 678899999999999987 3      57999999998888888877777776653

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.70  E-value=1.6e-16  Score=137.75  Aligned_cols=135  Identities=14%  Similarity=0.210  Sum_probs=112.0

Q ss_pred             CCchhHHHHHHH-----HHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHH
Q 023846           98 LNNFQDGVLSSA-----FMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFW--------MIAICRMLV  164 (276)
Q Consensus        98 ~~~~~~~~~~~~-----~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~  164 (276)
                      .++.+.+.+.+.     ..++..+++++.|+++||+|||+++..+.++..++.++++++++++        .++++|+++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~  106 (394)
T TIGR00883        27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQ  106 (394)
T ss_pred             CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHH
Confidence            444555554433     2233346899999999999999999999999999999999998875        478899999


Q ss_pred             HhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc---------ccchhHHHHHhHHHHHHH
Q 023846          165 GVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG---------HYNWRYAFWGEAILMFPF  232 (276)
Q Consensus       165 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~---------~~~w~~~~~~~~~~~~~~  232 (276)
                      |++.+...+....++.|++|+++|++..++.+.+..+|.++++.++..+.         .++||+.|++.+++.++.
T Consensus       107 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  183 (394)
T TIGR00883       107 GFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIG  183 (394)
T ss_pred             HhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988776542         468999998877665443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.69  E-value=2.2e-15  Score=135.01  Aligned_cols=157  Identities=11%  Similarity=0.065  Sum_probs=118.7

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHhh
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVG---CGFSFSFWMIAICRMLVGVG  167 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~r~l~G~~  167 (276)
                      ++++++|.+..+.++..+...++..++.++.|+++||+|||+++.++.++..+..+.   ...+++...+++++++.|++
T Consensus       276 ~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  355 (490)
T PRK10642        276 YLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVI  355 (490)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            445678888888888888889999999999999999999999988887654433322   22334677788899999988


Q ss_pred             hhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-c-cchhHHHHHhHHHHHHHHHHHHhhcccccC
Q 023846          168 EASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-H-YNWRYAFWGEAILMFPFAVLGFVMKPLQLK  245 (276)
Q Consensus       168 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (276)
                      .+........++.|.+|++.|++++++.+....+++.++|.+.+++. . .+|+.+++...+++++..+..+ +.||+++
T Consensus       356 ~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~-~~pes~~  434 (490)
T PRK10642        356 LNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV-TMKETAN  434 (490)
T ss_pred             HHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-HhccccC
Confidence            87777777888899999999999999755555666778898888877 3 4577777766666655555444 4577766


Q ss_pred             CCC
Q 023846          246 GFA  248 (276)
Q Consensus       246 ~~~  248 (276)
                      +..
T Consensus       435 ~~~  437 (490)
T PRK10642        435 RPL  437 (490)
T ss_pred             CCC
Confidence            543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.68  E-value=9.1e-16  Score=150.55  Aligned_cols=154  Identities=11%  Similarity=0.028  Sum_probs=120.8

Q ss_pred             ccccccCCCc--hhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHH
Q 023846           91 GIQGDFDLNN--FQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVG---CGFSFSFWMIAICRMLVG  165 (276)
Q Consensus        91 ~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~r~l~G  165 (276)
                      .+..+++.+.  ...+++.+++.++++++++++|+++||+|||++++++.++.+++.++   +..+++++.++++|++.|
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G  114 (1146)
T PRK08633         35 TLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLG  114 (1146)
T ss_pred             HHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            4445565543  44689999999999999999999999999999999988776555544   334578999999999999


Q ss_pred             hhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-c--------c-chhHHHHHhHHHHHHHHHH
Q 023846          166 VGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-H--------Y-NWRYAFWGEAILMFPFAVL  235 (276)
Q Consensus       166 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~--------~-~w~~~~~~~~~~~~~~~~~  235 (276)
                      ++.+...+...+++.|++|+++|++++++.+.+..+|.++|+.+++++. .        + +|.+.+.+..+...++.++
T Consensus       115 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (1146)
T PRK08633        115 AQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLI  194 (1146)
T ss_pred             HHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999987 4        2 3444444444433333333


Q ss_pred             HHhhccccc
Q 023846          236 GFVMKPLQL  244 (276)
Q Consensus       236 ~~~~~~~~~  244 (276)
                      ..+..|+.+
T Consensus       195 ~~~~~~~~~  203 (1146)
T PRK08633        195 FAYRLPKVP  203 (1146)
T ss_pred             HHhcCcCCC
Confidence            333445543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.68  E-value=1.1e-15  Score=132.70  Aligned_cols=137  Identities=11%  Similarity=0.055  Sum_probs=113.9

Q ss_pred             CccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhH----HHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 023846           88 PGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLI----GVGLTVWTLAVVGCGFSFSFWMIAICRML  163 (276)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~r~l  163 (276)
                      .+|.+.+++|++..++|++.+++.+...++++++|+++||+||+...    .++..+..+  ..+..+++++.+++.|++
T Consensus        26 ~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l  103 (382)
T TIGR00902        26 FFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGL  103 (382)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHH
Confidence            45688899999999999999999999999999999999999985433    222222222  244467899999999999


Q ss_pred             HHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHH
Q 023846          164 VGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAIL  228 (276)
Q Consensus       164 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~  228 (276)
                      +|.+.+...+...+++.++  +++|++.+|......++|.+++|++++.+. ..|||+.|++.++.
T Consensus       104 ~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~  167 (382)
T TIGR00902       104 FALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG  167 (382)
T ss_pred             HHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence            9999888888888887664  478899999999999999999999999998 78999999887655

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.68  E-value=1.4e-15  Score=149.06  Aligned_cols=150  Identities=13%  Similarity=0.053  Sum_probs=116.7

Q ss_pred             cccccCCC-chhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHH---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 023846           92 IQGDFDLN-NFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGV---GLTVWTLAVVGCGFSFSFWMIAICRMLVGVG  167 (276)
Q Consensus        92 ~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  167 (276)
                      +..+.+.+ ....++..+++.+.++++++++|+++||+|||+++..   +.++.++..+.....++++.++++|+++|++
T Consensus        42 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~  121 (1140)
T PRK06814         42 LSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIH  121 (1140)
T ss_pred             hccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            33444433 2446888899999999999999999999999997643   2222222223333448999999999999999


Q ss_pred             hhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhccc
Q 023846          168 EASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPL  242 (276)
Q Consensus       168 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~  242 (276)
                      .+...++..+++.+++|+++|++++|+.+++..+|.++||++++++. ..+|++.|+..++..++. ++..+..|+
T Consensus       122 ~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  196 (1140)
T PRK06814        122 SALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLG-WLASLFIPK  196 (1140)
T ss_pred             HHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH-HHHHhhCCC
Confidence            99999999999999999999999999999999999999999999998 889999995544444333 333333343

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.67  E-value=2.2e-15  Score=134.83  Aligned_cols=152  Identities=14%  Similarity=0.155  Sum_probs=125.6

Q ss_pred             ccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhcc-----CChhh-HHHHHHHHHHHHHHHhhh---hhHHHHHH
Q 023846           89 GTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSV-----NPFRL-IGVGLTVWTLAVVGCGFS---FSFWMIAI  159 (276)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----grr~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~  159 (276)
                      +|.+.++.|.+..+++.+ +.....+ ++.+++|+++||+     |||+. +.++.++.+++..++++.   ++++.+.+
T Consensus        35 l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~  112 (491)
T PRK11010         35 LQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAA  112 (491)
T ss_pred             HHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Confidence            367778889999999987 4444444 6899999999999     99885 667777777777777665   47888999


Q ss_pred             HHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhcc--cchhHHHHHhHHHHHHHHHHHH
Q 023846          160 CRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGH--YNWRYAFWGEAILMFPFAVLGF  237 (276)
Q Consensus       160 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~--~~w~~~~~~~~~~~~~~~~~~~  237 (276)
                      .+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++.++..  .|||..|++.+++.++..+..+
T Consensus       113 ~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~  192 (491)
T PRK11010        113 LAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL  192 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999888873  5999999999887766655444


Q ss_pred             hhcccc
Q 023846          238 VMKPLQ  243 (276)
Q Consensus       238 ~~~~~~  243 (276)
                      + .||+
T Consensus       193 ~-~~e~  197 (491)
T PRK11010        193 L-APEP  197 (491)
T ss_pred             h-cCCC
Confidence            3 4554

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.67  E-value=8.9e-15  Score=127.55  Aligned_cols=148  Identities=14%  Similarity=0.116  Sum_probs=123.6

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhh
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEAS  170 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~  170 (276)
                      ++++++|.+..+.+++.+...++.+++.++.|+++||+|||+.+..+.....+......+.++.+.+++.+++.+++.+.
T Consensus       242 ~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~  321 (393)
T PRK15011        242 FIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGI  321 (393)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            56678899999999988888888888999999999999999988877766666555555667888888889988888887


Q ss_pred             hhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhh
Q 023846          171 FISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVM  239 (276)
Q Consensus       171 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~  239 (276)
                      ..+....+..|.+| ++|+++.++++....+|..++|.+++.+. ..||+..|++.+++.++.++..++.
T Consensus       322 ~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        322 LGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            77777788899988 46999999999999999999999999998 7899999998887776665555544

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.67  E-value=1.8e-15  Score=131.94  Aligned_cols=151  Identities=12%  Similarity=0.092  Sum_probs=117.2

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHH---hhh-----hhHHHHHHHHH
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGC---GFS-----FSFWMIAICRM  162 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~r~  162 (276)
                      ++.+++|.+..+.+++.+++.++..+++++.|+++||+|||+.+..+....++.....   .+.     ..+..+++.++
T Consensus        28 ~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (396)
T TIGR00882        28 WLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGL  107 (396)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            5567899999999999999999999999999999999999999988776665443322   111     12334566788


Q ss_pred             HHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhhccc
Q 023846          163 LVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGHYNWRYAFWGEAILMFPFAVLGFVMKPL  242 (276)
Q Consensus       163 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~  242 (276)
                      +.|++.+...+....++.+..  ++++..++......++|.++||.+++.+...+|+++|++.+++.++..++.++..|+
T Consensus       108 ~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  185 (396)
T TIGR00882       108 YLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMFAKPK  185 (396)
T ss_pred             HHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHhCCC
Confidence            888888887887777776653  334566778888889999999999998877799999999988887776665555544


Q ss_pred             c
Q 023846          243 Q  243 (276)
Q Consensus       243 ~  243 (276)
                      .
T Consensus       186 ~  186 (396)
T TIGR00882       186 A  186 (396)
T ss_pred             C
Confidence            3

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.67  E-value=6.6e-15  Score=123.57  Aligned_cols=153  Identities=18%  Similarity=0.168  Sum_probs=138.7

Q ss_pred             CccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHH
Q 023846           88 PGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCG---FSFSFWMIAICRMLV  164 (276)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~r~l~  164 (276)
                      .+|.+++.|+++..+.+++...+..++.+.+++.|++.+|+|+|+.++.|+.++++++.+..   ...++..++++-++.
T Consensus        35 Lip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFil  114 (422)
T COG0738          35 LIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFIL  114 (422)
T ss_pred             hHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence            45899999999999999999999999999999999999999999999999999999999875   556899999999999


Q ss_pred             HhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-c-------------------cchhHHHHH
Q 023846          165 GVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-H-------------------YNWRYAFWG  224 (276)
Q Consensus       165 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~-------------------~~w~~~~~~  224 (276)
                      |.|.+...+.+..++..+.+++...+.+++.+.++.+|.+++|++++.+. +                   ..|+++|..
T Consensus       115 a~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~  194 (422)
T COG0738         115 ASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLI  194 (422)
T ss_pred             HhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHH
Confidence            99999999999999999999999999999999999999999999998875 2                   138899999


Q ss_pred             hHHHHHHHHHHHHhhc
Q 023846          225 EAILMFPFAVLGFVMK  240 (276)
Q Consensus       225 ~~~~~~~~~~~~~~~~  240 (276)
                      .+.+.+++.+.....+
T Consensus       195 ~~~~lvll~v~~~~~k  210 (422)
T COG0738         195 LAGLLVLLAVLILLSK  210 (422)
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            8887777666665554

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.67  E-value=3.1e-16  Score=129.72  Aligned_cols=155  Identities=15%  Similarity=0.188  Sum_probs=138.0

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEA  169 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~  169 (276)
                      |.+.+.+|.+..+..++......+..+++..+|.++|++|||+.+.+..+...+..++.++++|+..+++.|.+.|+|.|
T Consensus       102 ~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~g  181 (528)
T KOG0253|consen  102 PALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVG  181 (528)
T ss_pred             HHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCC
Confidence            67888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhcccccCCC
Q 023846          170 SFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQLKGF  247 (276)
Q Consensus       170 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (276)
                      + .|...++-.|..|..+|...+-+. ..+.+|.++...+...+. +.||||.+...+.+. ..+....++.||+++..
T Consensus       182 g-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl-~~~a~f~~w~~ESpRf~  257 (528)
T KOG0253|consen  182 G-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPL-MFAARFLVWVYESPRFY  257 (528)
T ss_pred             C-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHH-HHHHHHHhhcccCcchh
Confidence            9 788888889999999998887777 889999999998887777 899999988888554 34444556778888754

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.66  E-value=4.5e-15  Score=137.18  Aligned_cols=141  Identities=11%  Similarity=0.004  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhc
Q 023846          103 DGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDN  182 (276)
Q Consensus       103 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~  182 (276)
                      ..+...+..++.+++.++.|+++||+|||++++++.++.+++.++.++.++...+++++++.|++.++.++...++++|+
T Consensus       597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl  676 (742)
T TIGR01299       597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL  676 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677889999999999999999999999999999999999999988888888889999998888899999999999


Q ss_pred             CcchhhhHHHHHHHHHhhhhhhHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhhccccc
Q 023846          183 APVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGHYNWRYAFWGEAILMFPFAVLGFVMKPLQL  244 (276)
Q Consensus       183 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (276)
                      +|.+.|++++|+.+....+|.++||++++.+...+...+|++.+++.++..++.+++ ||+.
T Consensus       677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~L-PET~  737 (742)
T TIGR01299       677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKL-PDTR  737 (742)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhC-CCCc
Confidence            999999999999999999999999999998874456677887777766655555544 6543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.65  E-value=9.5e-15  Score=127.49  Aligned_cols=147  Identities=19%  Similarity=0.206  Sum_probs=126.1

Q ss_pred             cccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhh
Q 023846           94 GDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFIS  173 (276)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~  173 (276)
                      .+.|.+  ..++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++..++.|++.+..++
T Consensus       244 ~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~  321 (399)
T PRK05122        244 AARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFP  321 (399)
T ss_pred             HHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHH
Confidence            344553  456777888899999999999999999999999999888888888888888888888899999999998888


Q ss_pred             cHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhccc
Q 023846          174 LAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPL  242 (276)
Q Consensus       174 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~  242 (276)
                      .....+.|.+|+++|+++.++++....+|..+++.+.+++. ..||++.|++.+++.++..+..+++.++
T Consensus       322 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  391 (399)
T PRK05122        322 ALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR  391 (399)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            88888889999999999999999999999999999988888 7899999999888877766666555443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.65  E-value=6e-15  Score=128.98  Aligned_cols=153  Identities=15%  Similarity=0.085  Sum_probs=126.6

Q ss_pred             CccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhcc-----CChh-hHHHHHHHHHHHHHHHhhh---hhHHHHH
Q 023846           88 PGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSV-----NPFR-LIGVGLTVWTLAVVGCGFS---FSFWMIA  158 (276)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----grr~-~~~~~~~~~~~~~~~~~~~---~~~~~~~  158 (276)
                      .+|.+-++.|++.+++|++..+...  .+..+++|+++||+     |||+ .+.++.++.+++..++++.   .+++.++
T Consensus        21 ~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~   98 (402)
T PRK11902         21 TLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLA   98 (402)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHH
Confidence            3467778889999999999776665  69999999999999     7775 6888888887777777776   3577788


Q ss_pred             HHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-c-cchhHHHHHhHHHHHHHHHHH
Q 023846          159 ICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-H-YNWRYAFWGEAILMFPFAVLG  236 (276)
Q Consensus       159 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~-~~w~~~~~~~~~~~~~~~~~~  236 (276)
                      +..++.+++.+...+...+++.|+.|+++|+++.++...+..+|.++++.+++.+. . .|||..|++.+++.++..+. 
T Consensus        99 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~-  177 (402)
T PRK11902         99 GLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT-  177 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH-
Confidence            88888888888888999999999999999999999999999999999999888887 3 59999999988876655443 


Q ss_pred             Hhhcccc
Q 023846          237 FVMKPLQ  243 (276)
Q Consensus       237 ~~~~~~~  243 (276)
                      .+..||+
T Consensus       178 ~~~~~e~  184 (402)
T PRK11902        178 TLWAPEP  184 (402)
T ss_pred             HHhcCCC
Confidence            3344544

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.65  E-value=1.4e-15  Score=133.80  Aligned_cols=146  Identities=12%  Similarity=0.069  Sum_probs=127.3

Q ss_pred             cCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcH
Q 023846           96 FDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLA  175 (276)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~  175 (276)
                      .+.+..+.+++.++..++..++.+++|++.||+|+|+.+.++.++.+++.++.+++++.+.+++.+++.|++.+...+..
T Consensus       257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~  336 (420)
T PRK09528        257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGV  336 (420)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666788999999999999999999999999999999999999999988888889999999999999999988888888


Q ss_pred             HHHHhhcCcchhhhHHHHH-HHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhcc
Q 023846          176 APFIDDNAPVAKKTAWLGV-FYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKP  241 (276)
Q Consensus       176 ~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~  241 (276)
                      ..++.+.+|++.|++..+. ++....+|.+++|.+.|++. ..||+.+|++.+++.++..++.++..+
T Consensus       337 ~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~  404 (420)
T PRK09528        337 FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLS  404 (420)
T ss_pred             HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhc
Confidence            8999999999999887665 67778899999999999998 789999999988877666655555433

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.65  E-value=2.4e-16  Score=133.75  Aligned_cols=186  Identities=15%  Similarity=0.157  Sum_probs=142.7

Q ss_pred             CCChhhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCcccccccc--------CCCchhHHHHHHHHHHHHH
Q 023846           44 WFTPGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDF--------DLNNFQDGVLSSAFMVGLL  115 (276)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~  115 (276)
                      .++..+.+.+..+.+++..+|..+++...                 +-+...|        +.++...+.+..+..+|.+
T Consensus        36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt-----------------~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti   98 (538)
T KOG0252|consen   36 QWKHFKAIIIAGMGFFTDSYDLFSISLVT-----------------KILGYLYYHGDESGGHYPSGVLALVNAAALVGTI   98 (538)
T ss_pred             hHHHHHHHHHhhhhhcccchhhhhHHHHH-----------------HHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHH
Confidence            44555667777888888888877776422                 2332222        2456677899999999999


Q ss_pred             HHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhh-------hHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhh
Q 023846          116 VASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSF-------SFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKK  188 (276)
Q Consensus       116 i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r  188 (276)
                      +|++++|++.|++|||+++...++++.++.+++++..       -..++.+.|++.|+|.|+-+|...+..+|....+.|
T Consensus        99 ~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~R  178 (538)
T KOG0252|consen   99 FGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTR  178 (538)
T ss_pred             HHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccc
Confidence            9999999999999999999999999999999887763       367889999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhhhhhhHHHHHHHhhc----------------ccchhHHHHHhHHHHHHHHHHHHhhcccccCCC
Q 023846          189 TAWLGVFYMCLPSGYAIGYVYGGWVG----------------HYNWRYAFWGEAILMFPFAVLGFVMKPLQLKGF  247 (276)
Q Consensus       189 ~~~~~~~~~~~~~g~~~g~~~~~~l~----------------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (276)
                      |...+.+......|...|.+++-.+.                ..-||..+.+.+++++..+.. -+.+||+++..
T Consensus       179 Ga~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~-Rl~M~Et~~Y~  252 (538)
T KOG0252|consen  179 GAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYF-RLKMPETARYT  252 (538)
T ss_pred             cceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh-hhcCCcchhHH
Confidence            99999888888888777666554432                124998888877665433222 22357776554

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.64  E-value=2.2e-15  Score=130.84  Aligned_cols=141  Identities=14%  Similarity=0.108  Sum_probs=114.4

Q ss_pred             CccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCCh----hhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 023846           88 PGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPF----RLIGVGLTVWTLAVVGCGFSFSFWMIAICRML  163 (276)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l  163 (276)
                      .+|.+.+++|.+..++|++.+++.++..++++++|++.||+|||    +.+.++..+.  ........++++.+++.|++
T Consensus        26 ~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l  103 (382)
T PRK11128         26 FWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGL  103 (382)
T ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHH
Confidence            44677788999999999999999999999999999999999984    3333222222  22334445789999999999


Q ss_pred             HHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHH
Q 023846          164 VGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPF  232 (276)
Q Consensus       164 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~  232 (276)
                      .|++.+...+...+++.++  .++|++..+......++|.++||++++++. ++|||..|++.++..++.
T Consensus       104 ~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~  171 (382)
T PRK11128        104 FNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASM  171 (382)
T ss_pred             HHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence            9999888888888877776  466888889899999999999999999998 789999999887654443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.64  E-value=2.7e-15  Score=129.20  Aligned_cols=142  Identities=13%  Similarity=0.067  Sum_probs=123.0

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHhhh
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSF--WMIAICRMLVGVGE  168 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~r~l~G~~~  168 (276)
                      .+.+++|.+..+.+++.+.+.++..+++++.|++.||+|||+.+.++..+.+++.++..+.++.  ..+++..++.|++.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  309 (377)
T TIGR00890       230 PYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTW  309 (377)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHh
Confidence            4557788888889999999999999999999999999999999999998888888777766643  33456678888888


Q ss_pred             hhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHH
Q 023846          169 ASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPF  232 (276)
Q Consensus       169 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~  232 (276)
                      +...+....++.|.+|+++|+++.|+.+....+|..++|.+.+.+. ..||++.|++.+++.++.
T Consensus       310 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       310 GGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             ccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            8888888889999999999999999999999999999999999988 889999999887765543

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.64  E-value=3.2e-14  Score=122.85  Aligned_cols=147  Identities=12%  Similarity=0.157  Sum_probs=124.9

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhh
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEAS  170 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~  170 (276)
                      ++.+++|.++.+.+++.+...+...++.++.|++.||+|||+.+.++.++..+......+.++.+.+.+.+++.|++.+.
T Consensus       225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  304 (375)
T TIGR00899       225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI  304 (375)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55678899999999988888777888899999999999999999888777666666666677888888889999999898


Q ss_pred             hhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHh
Q 023846          171 FISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFV  238 (276)
Q Consensus       171 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~  238 (276)
                      ..+....++.|..|+ ++++++++++....+|..++|.+++.+. ..||+..|++.+++.++..++.++
T Consensus       305 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       305 LAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             HHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence            888888899999875 5679999999999999999999999988 789999999988877666655443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.62  E-value=1.6e-14  Score=123.10  Aligned_cols=145  Identities=21%  Similarity=0.224  Sum_probs=134.4

Q ss_pred             ccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChh-hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh
Q 023846           93 QGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFR-LIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASF  171 (276)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~  171 (276)
                      .+.+|.+..+.+++.+...++..++.++.+++.||+|||+ .+..+..+..++.++....++.+.+.+..++.|++.+..
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~  282 (352)
T cd06174         203 QEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFA  282 (352)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcc
Confidence            3445889999999999999999999999999999999999 999999999999999999999999999999999999999


Q ss_pred             hhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHH
Q 023846          172 ISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGF  237 (276)
Q Consensus       172 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~  237 (276)
                      .+....++.|..|+++|++.+++.+....+|..++|.+.+.+. ..+|++.+++.+++.++..+..+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         283 FPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             chhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence            9999999999999999999999999999999999999999998 88999999999988877666544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.62  E-value=5.6e-14  Score=123.43  Aligned_cols=152  Identities=19%  Similarity=0.104  Sum_probs=131.7

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhh
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEAS  170 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~  170 (276)
                      +..+.+|.+..+.+++.+.+.++..++.++.+++.||.++++.+..+..+.+++.++..+.++.+...++.++.|++.+.
T Consensus       249 ~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  328 (417)
T PRK10489        249 LADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAI  328 (417)
T ss_pred             HHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence            33444899999999999999999999999999999998888888888888888888888888888888889999999888


Q ss_pred             hhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhccc
Q 023846          171 FISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPL  242 (276)
Q Consensus       171 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~  242 (276)
                      ..+...+++.|..|++.||+++|++.....+|..+||.+.|++. ..|++..++..+...++..++.....++
T Consensus       329 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  401 (417)
T PRK10489        329 SSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGE  401 (417)
T ss_pred             HHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccc
Confidence            87888889999999999999999999999999999999999999 7888988888887766666666555454

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.61  E-value=1.7e-14  Score=126.09  Aligned_cols=149  Identities=13%  Similarity=0.061  Sum_probs=125.1

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEA  169 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~  169 (276)
                      |.+.++.|.+..+.+.+.+.+.++..++.++.|++.||+|||+.+..+.....++.++..+.++.+.+.+..++.|++.+
T Consensus       244 p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  323 (406)
T PRK11551        244 PSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVV  323 (406)
T ss_pred             HHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            45566789999999999999999999999999999999999999988777777777777777788778888888999888


Q ss_pred             hhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-c-cchhHHHHHhHHHHHHHHHHHHh
Q 023846          170 SFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-H-YNWRYAFWGEAILMFPFAVLGFV  238 (276)
Q Consensus       170 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~-~~w~~~~~~~~~~~~~~~~~~~~  238 (276)
                      ...+...+++.|.+|+++|++.+|+.+....+|..++|.+.|.+. . .+|...++......++..++.++
T Consensus       324 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK11551        324 GGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL  394 (406)
T ss_pred             hHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence            888888999999999999999999999999999999999999987 3 45666666665555444444443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.61  E-value=2.1e-14  Score=126.22  Aligned_cols=151  Identities=15%  Similarity=0.107  Sum_probs=104.9

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHh---hhhh-----HHHHHHHHH
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCG---FSFS-----FWMIAICRM  162 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~~r~  162 (276)
                      ++.+++|++..+.|++.+.+.++..++++++|+++||+|||+++.++..+.++......   .++.     +...+++++
T Consensus        36 ~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (420)
T PRK09528         36 WLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGI  115 (420)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777999999999999999999999999999999999999999887666554433211   1111     111122233


Q ss_pred             HHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhhccc
Q 023846          163 LVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGHYNWRYAFWGEAILMFPFAVLGFVMKPL  242 (276)
Q Consensus       163 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~  242 (276)
                      +.|.+.....+....+..+ . .++++..+|.......+|..++|.+++.+...+|++.|++.+++.++..++.++..++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  193 (420)
T PRK09528        116 YLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFFAKPD  193 (420)
T ss_pred             HhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhccccc
Confidence            3333322322333333222 1 2456778888999999999999999998886699999999888777666665555544


Q ss_pred             c
Q 023846          243 Q  243 (276)
Q Consensus       243 ~  243 (276)
                      +
T Consensus       194 ~  194 (420)
T PRK09528        194 A  194 (420)
T ss_pred             c
Confidence            3

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.61  E-value=3.7e-14  Score=123.37  Aligned_cols=188  Identities=16%  Similarity=0.150  Sum_probs=148.3

Q ss_pred             CCChhhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCcccccc-ccCCCchhHHHHHHHHHHHHHHHHhHHH
Q 023846           44 WFTPGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQG-DFDLNNFQDGVLSSAFMVGLLVASPIFA  122 (276)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~g  122 (276)
                      .+.+||.+.++.+..++.....+.+.....                |++++ |.+.+.+..|++.++..++.+++++.+|
T Consensus        29 ~~t~wrsi~l~~~~sfl~~v~~sI~~~s~w----------------pYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~   92 (488)
T KOG2325|consen   29 RKTNWRSIYLALLNSFLVAVQFSIYLTSMW----------------PYLQKLDPTATATFFGLVIAASSLGHAIFSLIFG   92 (488)
T ss_pred             cCCchHhHHHHHHHHHHHhhhheEEEeecc----------------hhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhc
Confidence            345566788888888888777776665443                56655 5777888889999999999999999999


Q ss_pred             HhhhccCC-hhhHHHHHHHHHHHHHHH-hhh---h-hHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHH
Q 023846          123 SLARSVNP-FRLIGVGLTVWTLAVVGC-GFS---F-SFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFY  196 (276)
Q Consensus       123 ~l~d~~gr-r~~~~~~~~~~~~~~~~~-~~~---~-~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~  196 (276)
                      +...|.+. |+.++.+.++.+++.++. ++.   + ..+.++++|++.|+|.+.. ...-+|+++....++|.++++...
T Consensus        93 ~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~  171 (488)
T KOG2325|consen   93 IWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATS  171 (488)
T ss_pred             ccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhh
Confidence            99999986 888999999999999887 333   2 6788999999999996555 566899999888899999999999


Q ss_pred             HHhhhhhhHHHHHHHhhc---ccc-----------hhHHHHHhHHHHHHHHHHHHhhcccccCCCC
Q 023846          197 MCLPSGYAIGYVYGGWVG---HYN-----------WRYAFWGEAILMFPFAVLGFVMKPLQLKGFA  248 (276)
Q Consensus       197 ~~~~~g~~~g~~~~~~l~---~~~-----------w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (276)
                      .+..+|.++||.++..+.   ..|           +..+-|+.+++.++.++.++++.+|..+...
T Consensus       172 ~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~  237 (488)
T KOG2325|consen  172 GGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGII  237 (488)
T ss_pred             hHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCcc
Confidence            999999999998887765   222           3456677777777777777777666655443

>PRK12382 putative transporter; Provisional

Probab=99.61  E-value=4.9e-14  Score=122.75  Aligned_cols=144  Identities=14%  Similarity=0.168  Sum_probs=125.4

Q ss_pred             cccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhh
Q 023846           94 GDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFIS  173 (276)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~  173 (276)
                      ++.+.+  ..++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+.+..++.|++.+...+
T Consensus       244 ~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  321 (392)
T PRK12382        244 ASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFP  321 (392)
T ss_pred             HhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHH
Confidence            345554  356667778888899999999999999999999999999888888888888888888899999999998888


Q ss_pred             cHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhh
Q 023846          174 LAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVM  239 (276)
Q Consensus       174 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~  239 (276)
                      .....+.+.+|+++||++.|+++....+|..++|.+.+++. +.||++.|++.+++.++..++.+++
T Consensus       322 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        322 ALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence            88888999999999999999999999999999999999998 7899999999998877776665544

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.60  E-value=7.8e-15  Score=130.29  Aligned_cols=146  Identities=15%  Similarity=0.174  Sum_probs=120.6

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhcc--CChhhHHH--HHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSV--NPFRLIGV--GLTVWTLAVVGCGFSFSFWMIAICRMLVG  165 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--grr~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~r~l~G  165 (276)
                      +.+.+++|.+..+.+++.++..++..+++++.|++.||.  ++|+...+  +.++.+++.+++.+.++++.+++.+++.|
T Consensus       265 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G  344 (455)
T TIGR00892       265 VPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFG  344 (455)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence            344567899999999999999999999999999999973  34443333  33444455556667788999999999999


Q ss_pred             hhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-cc-chhHHHHHhHHHHHHHHHH
Q 023846          166 VGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HY-NWRYAFWGEAILMFPFAVL  235 (276)
Q Consensus       166 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~-~w~~~~~~~~~~~~~~~~~  235 (276)
                      ++.+...+...+++.|.+|++++++.+++++....+|.++||.++|.+. .. +|++.|++.+++.++..+.
T Consensus       345 ~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       345 LSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF  416 (455)
T ss_pred             HHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988 54 6999999988876655443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.60  E-value=3.2e-14  Score=126.79  Aligned_cols=149  Identities=14%  Similarity=0.024  Sum_probs=114.6

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHH--HHhhhhhHHHHHHHHHHHHhhh
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVV--GCGFSFSFWMIAICRMLVGVGE  168 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~r~l~G~~~  168 (276)
                      ++++++|++..+.++..+.+.++..++.++.|+++||+|||+.+.+...+..++..  .....++.+.+.+.+++.|++.
T Consensus       284 yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  363 (467)
T PRK09556        284 YAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLV  363 (467)
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            66778999999999999999999999999999999999999887665544443332  2223356666677888888654


Q ss_pred             hhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhh-hhhHHHHHHHhhcc-------------cchhHHHHHhHHHHHHHHH
Q 023846          169 ASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPS-GYAIGYVYGGWVGH-------------YNWRYAFWGEAILMFPFAV  234 (276)
Q Consensus       169 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~-------------~~w~~~~~~~~~~~~~~~~  234 (276)
                      ..........+.|.+|++.||++.|+.+...++ |..++|.+.|++..             .+|+..|++.++..++..+
T Consensus       364 ~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~  443 (467)
T PRK09556        364 FGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCIC  443 (467)
T ss_pred             hhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHH
Confidence            444333446677999999999999999999886 77889998888864             5799999988777766655


Q ss_pred             HHHhh
Q 023846          235 LGFVM  239 (276)
Q Consensus       235 ~~~~~  239 (276)
                      ..++.
T Consensus       444 ~~~~~  448 (467)
T PRK09556        444 LMAIV  448 (467)
T ss_pred             HHHHH
Confidence            55443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.60  E-value=6.2e-14  Score=121.78  Aligned_cols=143  Identities=13%  Similarity=0.033  Sum_probs=127.9

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhh
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEAS  170 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~  170 (276)
                      .+.+++|.++.+.|++.+...++.++..++.+++.||+|+|+.+.++.++..+..++.+++++.+.+++.+++.|+..+.
T Consensus       230 ~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~  309 (382)
T TIGR00902       230 IYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAV  309 (382)
T ss_pred             HHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Confidence            33456999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcHHHHHhhcCcchhhhHHHHHHH-HHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHH
Q 023846          171 FISLAAPFIDDNAPVAKKTAWLGVFY-MCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVL  235 (276)
Q Consensus       171 ~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~  235 (276)
                      ..+....++.+. |+++|++..++++ ....+|.++|+.++|++. ..|+ ..|+..++++++.+++
T Consensus       310 ~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       310 CHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            999999999998 9999999999986 567899999999999999 7786 6677777777655433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.59  E-value=4.4e-14  Score=126.80  Aligned_cols=141  Identities=12%  Similarity=0.079  Sum_probs=110.9

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHhhh
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFS--FSFWMIAICRMLVGVGE  168 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~~~  168 (276)
                      ++++++|.+..+.+++.+.+.++.+++.++.|+++||+|||+++.++.++..+..++....  .+.+.+.+..++.++..
T Consensus       301 ~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (496)
T PRK03893        301 YLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLG  380 (496)
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHh
Confidence            3446899999999999999999999999999999999999999888877766655443332  23344444455544443


Q ss_pred             hhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHH
Q 023846          169 ASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFP  231 (276)
Q Consensus       169 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~  231 (276)
                      ....+..+.++.|.+|+++|++.+++.+....+|..+||.++|.+. ..||++.+...+....+
T Consensus       381 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~  444 (496)
T PRK03893        381 QGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF  444 (496)
T ss_pred             cccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence            3445667788999999999999999999999999999999999998 88999888665544433

>PRK03699 putative transporter; Provisional

Probab=99.59  E-value=9e-14  Score=121.26  Aligned_cols=148  Identities=14%  Similarity=0.100  Sum_probs=124.6

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhh
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEAS  170 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~  170 (276)
                      ++++++|++..+.+++.+.+.++..++.++.|+++||+++|+.+.....+.++..++....++.+.+.+..++.|++.+.
T Consensus       231 ~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  310 (394)
T PRK03699        231 YAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSA  310 (394)
T ss_pred             HHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence            55577899999999999999999999999999999999999999888877777777776777777777788889998888


Q ss_pred             hhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhh
Q 023846          171 FISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVM  239 (276)
Q Consensus       171 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~  239 (276)
                      .++...++..+..| ++++...+.......+|..++|.+.+++. ..||+..+++.+++.++..+..+..
T Consensus       311 ~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  379 (394)
T PRK03699        311 IYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILL  379 (394)
T ss_pred             HHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHH
Confidence            88888888888776 45677888888899999999999999998 7899999998888776665544433

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.59  E-value=4.9e-14  Score=125.14  Aligned_cols=154  Identities=8%  Similarity=-0.087  Sum_probs=121.1

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhh-----h------hHHHHH
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFS-----F------SFWMIA  158 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~-----~------~~~~~~  158 (276)
                      |.+.+++|.+..+.++......++.+++.++.|++.||+|||+.+.++.++.+++.++..+.     +      +...+.
T Consensus       308 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (481)
T TIGR00879       308 PTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIV  387 (481)
T ss_pred             HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHH
Confidence            56777889988888999999999999999999999999999999999888877776666521     1      222233


Q ss_pred             HHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHH
Q 023846          159 ICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGF  237 (276)
Q Consensus       159 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~  237 (276)
                      ...++.+.......+....++.|.+|+++|++++++.+....+|.+++|.+.+.+. +.+|++.|++.++++++..++.+
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~  467 (481)
T TIGR00879       388 FILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVY  467 (481)
T ss_pred             HHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHh
Confidence            33333333223334666777899999999999999999999999999999999888 78999999999888877777766


Q ss_pred             hhcccc
Q 023846          238 VMKPLQ  243 (276)
Q Consensus       238 ~~~~~~  243 (276)
                      ++.||.
T Consensus       468 ~~~~~~  473 (481)
T TIGR00879       468 FFLPET  473 (481)
T ss_pred             eecccC
Confidence            665553

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.59  E-value=3e-14  Score=123.28  Aligned_cols=146  Identities=15%  Similarity=0.015  Sum_probs=109.4

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChh--hHH------HHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFR--LIG------VGLTVWTLAVVGCGFSFSFWMIAICRM  162 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~--~~~------~~~~~~~~~~~~~~~~~~~~~~~~~r~  162 (276)
                      ++.+++|.+..+.+++.+...++..++.++.|++.||+|||+  ...      .+.++..+........++.+..+....
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (399)
T TIGR00893       241 YLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVA  320 (399)
T ss_pred             HHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence            556778999999999999999999999999999999999996  111      111111111122222234444444444


Q ss_pred             HHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccc-hhHHHHHhHHHHHHHHHHHH
Q 023846          163 LVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYN-WRYAFWGEAILMFPFAVLGF  237 (276)
Q Consensus       163 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~-w~~~~~~~~~~~~~~~~~~~  237 (276)
                      +.+++.+ ..+...+++.|.+|+++|++++++.+....+|..++|.+.+.+. ..| |++.|++.+++.++..+..+
T Consensus       321 ~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       321 LGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             HHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            4444444 77888999999999999999999999999999999999999998 667 99999988887766655544

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.58  E-value=2.2e-14  Score=125.35  Aligned_cols=138  Identities=17%  Similarity=0.247  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhc
Q 023846          103 DGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDN  182 (276)
Q Consensus       103 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~  182 (276)
                      .+.+.+++.++..++.+..|++.||+|||+.+..+..+..++.+...+.++.+.+.+.+++.|++.+...+...+++.+.
T Consensus       260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (408)
T PRK09874        260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN  339 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence            45666777888889999999999999999999999888888887777778888888999999999999999999999999


Q ss_pred             CcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhc
Q 023846          183 APVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMK  240 (276)
Q Consensus       183 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~  240 (276)
                      .|+++||+.+++.+....+|..+||.+++.+. ..||++.|++.+++.++..+..++..
T Consensus       340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~  398 (408)
T PRK09874        340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL  398 (408)
T ss_pred             CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998 88999999999988877776665543

>PRK03545 putative arabinose transporter; Provisional

Probab=99.56  E-value=3.7e-13  Score=117.18  Aligned_cols=149  Identities=15%  Similarity=0.125  Sum_probs=121.9

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHhhh
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAV-VGCGFSFSFWMIAICRMLVGVGE  168 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~l~G~~~  168 (276)
                      +.+.+++|.+..+.+++.+.+.++..+++++.|++.||+|+|... .+..+..++. .+....++.+.+++..++.|++.
T Consensus       230 ~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~  308 (390)
T PRK03545        230 PFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAI  308 (390)
T ss_pred             HHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence            456667899999999999999999999999999999999988654 4444444433 34455677888888899999988


Q ss_pred             hhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhc
Q 023846          169 ASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMK  240 (276)
Q Consensus       169 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~  240 (276)
                      +...+.....+.+..| ++|++++|+++....+|..+||+++|++. +.|++..|++.+++.++.++...+..
T Consensus       309 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        309 MCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             hcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            7777777788888877 68899999999999999999999999999 89999999999888777666655543

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.56  E-value=1.3e-13  Score=123.48  Aligned_cols=152  Identities=18%  Similarity=0.196  Sum_probs=128.2

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHH
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFS-----FSFWMIAICRMLV  164 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~  164 (276)
                      +.+..+..-|+..++++.....+..++.++++|.++||++||++++.+.++.++..++.++.     .+.+.+++.-++.
T Consensus        34 ~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~  113 (524)
T PF05977_consen   34 AWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLL  113 (524)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            34555566688899999999999999999999999999999999999988776655443332     3788899999999


Q ss_pred             HhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhcc
Q 023846          165 GVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKP  241 (276)
Q Consensus       165 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~  241 (276)
                      |++.+...|...+++.|..|+++...+.++.++..++..++||.++|.+. ..|-.++|.+.++..++..+.+..+++
T Consensus       114 g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~  191 (524)
T PF05977_consen  114 GIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKP  191 (524)
T ss_pred             HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            99999999999999999999999999999999999999999999999988 788889998887765554444444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.56  E-value=3.4e-13  Score=117.14  Aligned_cols=143  Identities=11%  Similarity=0.102  Sum_probs=118.4

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEA  169 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~  169 (276)
                      |.+.++.|.+..+.+++.+.+.++.++++++.|++.||+|+|+++..+..+..++.+...  . ...+....++.|++..
T Consensus       224 p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~  300 (381)
T PRK03633        224 PLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGF  300 (381)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHH
Confidence            455566789988999999999999999999999999999999999888888777665433  2 2334456778888777


Q ss_pred             hhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHH
Q 023846          170 SFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVL  235 (276)
Q Consensus       170 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~  235 (276)
                      ...+...+++.|..|+++++...+.++...++|..+||.++|++. +.+|++.|++.+.+.++..+.
T Consensus       301 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~  367 (381)
T PRK03633        301 TLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLM  367 (381)
T ss_pred             hHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence            788999999999999888888888888899999999999999998 889999999988776554433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.55  E-value=7.4e-13  Score=115.49  Aligned_cols=153  Identities=12%  Similarity=0.123  Sum_probs=119.8

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhhh
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSF-SFWMIAICRMLVGVGEA  169 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~~  169 (276)
                      .+.+++|.+..+.+...+.+.++.+++.++.|++.||+|||+.+.++..+.+++.++....+ +...+  .-++.|++.+
T Consensus       230 ~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g  307 (393)
T PRK09705        230 AFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLG  307 (393)
T ss_pred             HHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhcc
Confidence            44456899999999999999999999999999999999999999988877777766544323 22222  2346688888


Q ss_pred             hhhhcHHHHHhhcCc-chhhhHHHHHHHHHhhhhhhHHHHHHHhhc-cc-chhHHHHHhHHHHHHHHHHHHhhcccccC
Q 023846          170 SFISLAAPFIDDNAP-VAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HY-NWRYAFWGEAILMFPFAVLGFVMKPLQLK  245 (276)
Q Consensus       170 ~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (276)
                      ...+.......+..+ ++++++.+++.+....++..++|.+.+++. .. +|...|++.++..++..+....+.||++.
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (393)
T PRK09705        308 GAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFP  386 (393)
T ss_pred             chHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            877877777777775 678999999999999999999999999998 44 48888888777776666666666666543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.55  E-value=7.2e-14  Score=124.83  Aligned_cols=155  Identities=10%  Similarity=-0.031  Sum_probs=117.6

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhh--hH-H-HHHHHHHHHH
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSF--SF-W-MIAICRMLVG  165 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~--~~-~-~~~~~r~l~G  165 (276)
                      |.+.++.|.+.....+......++.+++.++.|+++||+|||+.++++.++.+++.++++...  +. + ....+.++.+
T Consensus       295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~  374 (479)
T PRK10077        295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV  374 (479)
T ss_pred             HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence            566677888877777777788888999999999999999999999999999888877665432  11 1 2223344444


Q ss_pred             hhhhhh-hhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhh------c-ccchhHHHHHhHHHHHHHHHHHH
Q 023846          166 VGEASF-ISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWV------G-HYNWRYAFWGEAILMFPFAVLGF  237 (276)
Q Consensus       166 ~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l------~-~~~w~~~~~~~~~~~~~~~~~~~  237 (276)
                      ++.+.. .+....++.|.+|+++|++++|+.+....+|.++++.+.+.+      . ..+|++.|++.+++.++..++.+
T Consensus       375 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (479)
T PRK10077        375 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW  454 (479)
T ss_pred             HHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHH
Confidence            444432 366788999999999999999999999999998886555433      3 67899999998888777777766


Q ss_pred             hhccccc
Q 023846          238 VMKPLQL  244 (276)
Q Consensus       238 ~~~~~~~  244 (276)
                      ++.||++
T Consensus       455 ~~~~e~~  461 (479)
T PRK10077        455 KFVPETK  461 (479)
T ss_pred             hccccCC
Confidence            6666644

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.55  E-value=8.1e-14  Score=121.41  Aligned_cols=135  Identities=13%  Similarity=0.155  Sum_probs=112.2

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHhhh
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVV-GCGFSFSFWMIAICRMLVGVGE  168 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~r~l~G~~~  168 (276)
                      +++.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+.++..+..+..+ +....++.+.+.+..++.|++.
T Consensus       263 ~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (405)
T TIGR00891       263 TYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLV  342 (405)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            355667899999999999999999999999999999999999998888776533332 3334456666777777778777


Q ss_pred             hhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccc-hhHHHHH
Q 023846          169 ASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYN-WRYAFWG  224 (276)
Q Consensus       169 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~-w~~~~~~  224 (276)
                      +...+....++.|.+|+++|++++|+.+....+|..++|++.|++. ..| |+..+..
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       343 QGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             ccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            7777888899999999999999999999999999999999999998 667 7766554

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.54  E-value=3.6e-13  Score=118.86  Aligned_cols=155  Identities=14%  Similarity=0.176  Sum_probs=123.0

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhh----ccCChhhHHHH-HHHHHHHHHHHhhhhhHH---------
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLAR----SVNPFRLIGVG-LTVWTLAVVGCGFSFSFW---------  155 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~grr~~~~~~-~~~~~~~~~~~~~~~~~~---------  155 (276)
                      +.+.+++|.+....+++..+..+..++.+++.|+++|    |+|||+.++++ ....+++.++++++++.+         
T Consensus        28 ~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~  107 (477)
T TIGR01301        28 TPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDK  107 (477)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccc
Confidence            3466789999999999999999999999999999999    59999998875 566666667777766542         


Q ss_pred             --------HHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhh--hHHHHHHHHHhhhhhhHHHHHHHhhc---c-------
Q 023846          156 --------MIAICRMLVGVGEASFISLAAPFIDDNAPVAKK--TAWLGVFYMCLPSGYAIGYVYGGWVG---H-------  215 (276)
Q Consensus       156 --------~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~g~~~~~~l~---~-------  215 (276)
                              .++++-.+..++.....+...++++|.+|+++|  +.+.++.+.+.++|.++|+.++++..   .       
T Consensus       108 ~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~  187 (477)
T TIGR01301       108 KTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTE  187 (477)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccc
Confidence                    233334455567778888889999999998865  67999999999999999999998752   1       


Q ss_pred             ------cchhHHHHHhHHHHHHHHHHHHhhccccc
Q 023846          216 ------YNWRYAFWGEAILMFPFAVLGFVMKPLQL  244 (276)
Q Consensus       216 ------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (276)
                            .+.|+.|++.+++.++..++..+..+|.+
T Consensus       188 ~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       188 ACGVSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence                  16789999988887777777776666654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.53  E-value=8.4e-13  Score=118.24  Aligned_cols=150  Identities=19%  Similarity=0.286  Sum_probs=134.6

Q ss_pred             ccc-ccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 023846           90 TGI-QGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGE  168 (276)
Q Consensus        90 ~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  168 (276)
                      |.+ .+++|.+...+|++.+.+.+|.++++++.+++.+|+++++.+..+.++.+++.+..+++++.+..++..++.|++.
T Consensus       242 Pl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~  321 (524)
T PF05977_consen  242 PLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAW  321 (524)
T ss_pred             hHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            455 4678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhh
Q 023846          169 ASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVM  239 (276)
Q Consensus       169 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~  239 (276)
                      ........+.+.+..|++.||++++++++....+..+|.++.|.+. ..|.+..+.+.++..++..++.+..
T Consensus       322 ~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~  393 (524)
T PF05977_consen  322 IIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRF  393 (524)
T ss_pred             HHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999 8899999888776655555444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.53  E-value=6e-14  Score=121.53  Aligned_cols=139  Identities=9%  Similarity=0.027  Sum_probs=111.2

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHH--HHHhh--hhhHHHHHHHHHHHHh
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAV--VGCGF--SFSFWMIAICRMLVGV  166 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~r~l~G~  166 (276)
                      ++++++|.+..+.+.+.+...++..++.++.|++.||+|||+.+..+..+..+..  +...+  .++.+.+.+..++.|+
T Consensus       245 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  324 (394)
T TIGR00883       245 YLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLAL  324 (394)
T ss_pred             HHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            4457789999999999999999999999999999999999998775554443322  22222  2466777788889999


Q ss_pred             hhhhhhhcHHHHHhhcCcchhhhHHHHH-HHHHhhhhhhHHHHHHHhhc-ccc-hhHHHHHhHHHH
Q 023846          167 GEASFISLAAPFIDDNAPVAKKTAWLGV-FYMCLPSGYAIGYVYGGWVG-HYN-WRYAFWGEAILM  229 (276)
Q Consensus       167 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~-~~~-w~~~~~~~~~~~  229 (276)
                      +.+...+...+++.|.+|+++|+++.++ .+....+|..++|.+++++. +.| |++.++...+..
T Consensus       325 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       325 IGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA  390 (394)
T ss_pred             HHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence            9889999999999999999999999997 45666788999999999998 666 888777665543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.52  E-value=4.3e-14  Score=119.36  Aligned_cols=177  Identities=16%  Similarity=0.109  Sum_probs=144.8

Q ss_pred             hhhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhh
Q 023846           47 PGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLAR  126 (276)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d  126 (276)
                      +.+.+..+++++++.+..++.+..+..                -++.|+.|++..+.++..+.+-++...|.+++||++|
T Consensus       250 ~Nk~iW~la~a~vfvYivR~gi~dW~p----------------~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSD  313 (448)
T COG2271         250 KNKLIWLLALANVFVYVVRYGINDWGP----------------LYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSD  313 (448)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHhhhHH----------------HHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            345678889999999999998877654                4778899999999999999999999999999999999


Q ss_pred             cc--CChhhHHHH-HHHHHHHHHHHhhhh--hHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhh
Q 023846          127 SV--NPFRLIGVG-LTVWTLAVVGCGFSF--SFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPS  201 (276)
Q Consensus       127 ~~--grr~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~  201 (276)
                      |+  |||....+. ++...++.+..-+++  |+++..++.++.|+..-+..-.......|..|++--|++.|+.+.+..+
T Consensus       314 klfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl  393 (448)
T COG2271         314 KLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYL  393 (448)
T ss_pred             HhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHH
Confidence            95  677665443 444444445555555  5688888999999988888888888889999999999999999999999


Q ss_pred             -hhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhh
Q 023846          202 -GYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVM  239 (276)
Q Consensus       202 -g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~  239 (276)
                       |.+.+....+++. .+||...|.+..+.++++.++.+..
T Consensus       394 ~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~  433 (448)
T COG2271         394 IGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV  433 (448)
T ss_pred             hhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence             8888888888887 7899999998887776666655544

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.50  E-value=4.8e-13  Score=118.16  Aligned_cols=149  Identities=13%  Similarity=-0.009  Sum_probs=105.4

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhcc--CChhhH-HH---HHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSV--NPFRLI-GV---GLTVWTLAVVGCGFSFSFWMIAICRMLV  164 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--grr~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~r~l~  164 (276)
                      ++.+++|++..+.+...+.+.++..++.++.|+++||+  ++|+.. ..   +..+..+...... ..+.....+..+..
T Consensus       269 ~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  347 (434)
T PRK11663        269 YMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMP-FASYVMQAACFFTI  347 (434)
T ss_pred             HHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcc-cccHHHHHHHHHHH
Confidence            45577899999999999999999999999999999998  333322 22   1111111111122 22333333444445


Q ss_pred             HhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhc
Q 023846          165 GVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMK  240 (276)
Q Consensus       165 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~  240 (276)
                      |++...........+.|.+|+++|++++|+.+....+|.+++|.+.+++. ..||+..|++.++..++..+..+...
T Consensus       348 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  424 (434)
T PRK11663        348 GFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFL  424 (434)
T ss_pred             HHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            54433223333456789999999999999999999999999999999998 78999999999888777766555443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.50  E-value=2.8e-13  Score=119.55  Aligned_cols=155  Identities=11%  Similarity=-0.005  Sum_probs=122.5

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhc----cCChh-hHHHHHHHHHHHHHHHhhhhh------HHHHH
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARS----VNPFR-LIGVGLTVWTLAVVGCGFSFS------FWMIA  158 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~grr~-~~~~~~~~~~~~~~~~~~~~~------~~~~~  158 (276)
                      +++.+++|+++.++|++.++..+..++..++.|+++||    +|||| .++++....+++.+++...++      +..++
T Consensus        24 ~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  103 (437)
T TIGR00792        24 FFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAY  103 (437)
T ss_pred             HHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHH
Confidence            57788899999999999999999999999999999997    67744 566777777777777665543      45667


Q ss_pred             HHHHHHHhhhhhhhhcHHHHHhhcC-cchhhhHHHHHHHHHhhhhhhHHHHHHHhhc--------ccchhHHHHHhHHHH
Q 023846          159 ICRMLVGVGEASFISLAAPFIDDNA-PVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG--------HYNWRYAFWGEAILM  229 (276)
Q Consensus       159 ~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~--------~~~w~~~~~~~~~~~  229 (276)
                      +.+++.+++.+.......++..|.. ++++|++..++.+.+..+|..+++.+.+.+.        ..+||+.+++.+++.
T Consensus       104 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~  183 (437)
T TIGR00792       104 ITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIG  183 (437)
T ss_pred             HHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHH
Confidence            7788888888887777778888887 5789999999999888888877665544332        358999999999888


Q ss_pred             HHHHHHHHhhccccc
Q 023846          230 FPFAVLGFVMKPLQL  244 (276)
Q Consensus       230 ~~~~~~~~~~~~~~~  244 (276)
                      ++..++.++..+|++
T Consensus       184 ~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       184 VVSLIICFFGTKERY  198 (437)
T ss_pred             HHHHHHHHcCCEecC
Confidence            777666655555543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00895 2A0115 benzoate transport

Probab=99.49  E-value=7.2e-13  Score=115.02  Aligned_cols=124  Identities=18%  Similarity=0.079  Sum_probs=104.7

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEA  169 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~  169 (276)
                      |.+.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+....+......++.....+.+.+.+..++.|++.+
T Consensus       274 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  353 (398)
T TIGR00895       274 PKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVN  353 (398)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            56778889999999999999999999999999999999999955444443333333333335677778888899999999


Q ss_pred             hhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhh
Q 023846          170 SFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWV  213 (276)
Q Consensus       170 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  213 (276)
                      ...+...+++.|.+|+++|++++|+......+|..+||.++|++
T Consensus       354 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       354 GGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            99999999999999999999999999999999999999998875

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.49  E-value=4.2e-13  Score=119.89  Aligned_cols=147  Identities=11%  Similarity=-0.016  Sum_probs=107.8

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCCh-------hhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPF-------RLIGVGLTVWTLAVVGCGFSFSFWMIAICRML  163 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l  163 (276)
                      ++.+++|++..+.+.+.+++.++..++.++.|+++||++||       ..+.+..++.++..++....++.+..++..++
T Consensus       278 ~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l  357 (476)
T PLN00028        278 YFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMIL  357 (476)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            45677899999999999999999999999999999999865       23333333333444445556666666666677


Q ss_pred             HHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhh
Q 023846          164 VGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVM  239 (276)
Q Consensus       164 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~  239 (276)
                      .+++.+...+...+++.+..| +.+|...|+.+.+..+|..++|.+.+ .. ..+|+..|++.+++.++..++.++.
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~  432 (476)
T PLN00028        358 FSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI  432 (476)
T ss_pred             HHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence            777666665656666666654 78999999998888888888776654 22 4579999999988877776666554

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.49  E-value=1.9e-12  Score=114.74  Aligned_cols=149  Identities=16%  Similarity=0.220  Sum_probs=129.8

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCCh--hhHHHHHHHHHHHHHHHhh--------hhhHHHHHHH
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPF--RLIGVGLTVWTLAVVGCGF--------SFSFWMIAIC  160 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr--~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~  160 (276)
                      +..+++|++..+...+..+..+..++|++++|++.||+|.|  +++..++++..+..+...+        .++-+.+.+.
T Consensus       307 ~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~  386 (477)
T PF11700_consen  307 YATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVL  386 (477)
T ss_pred             HHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHH
Confidence            55679999999999999999999999999999999999999  8888888887665555444        5788889999


Q ss_pred             HHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc--ccchhHHHHHhHHHHHHHHHHHHh
Q 023846          161 RMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG--HYNWRYAFWGEAILMFPFAVLGFV  238 (276)
Q Consensus       161 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~--~~~w~~~~~~~~~~~~~~~~~~~~  238 (276)
                      -++.|++.|..++...++.+++.|+++.+..+|++.........+||++.+.+.  ..+-|+.++...++.++.+++.++
T Consensus       387 a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  387 AVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF  466 (477)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999998  445888888887776666665544


Q ss_pred             h
Q 023846          239 M  239 (276)
Q Consensus       239 ~  239 (276)
                      .
T Consensus       467 v  467 (477)
T PF11700_consen  467 V  467 (477)
T ss_pred             c
Confidence            4

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00897 2A0118 polyol permease family

Probab=99.49  E-value=2.6e-12  Score=112.35  Aligned_cols=148  Identities=15%  Similarity=0.119  Sum_probs=115.1

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHH-HHHHHHHHHHHHHhh-----hhhHHHHHHHHHH
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIG-VGLTVWTLAVVGCGF-----SFSFWMIAICRML  163 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~r~l  163 (276)
                      |.+.+++|.+..+.+++.+...++..++.+..|+++||+|||+.+. .+.+...+..+.+.+     .++.+.+++..++
T Consensus       246 p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  325 (402)
T TIGR00897       246 PMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIA  325 (402)
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHH
Confidence            4566779999999999999999999999999999999999988764 333333333222221     2466777788888


Q ss_pred             HHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhh
Q 023846          164 VGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVM  239 (276)
Q Consensus       164 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~  239 (276)
                      .|++.+...+. ...+.+..| ++|++++|+.+....+|..++|.+++.+. ..||+.++++.++..++..++..+.
T Consensus       326 ~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       326 LGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            89888776553 456667655 68999999999999999999999999998 7899999999988877766665554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.48  E-value=1.7e-12  Score=107.78  Aligned_cols=149  Identities=19%  Similarity=0.221  Sum_probs=136.8

Q ss_pred             CCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 023846           87 TPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGV  166 (276)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~  166 (276)
                      |.++.+++++|++.+..|++.++..++..+.+++..++.+|+|.++.+..++++.+++.++-... +.+.++.+-.+.|.
T Consensus        33 PLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~  111 (395)
T COG2807          33 PLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGA  111 (395)
T ss_pred             hhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHh
Confidence            47789999999999999999999999999999999999999999999999999999999998877 88889999999999


Q ss_pred             hhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-cc-chhHHHHHhHHHHHHHHHHHH
Q 023846          167 GEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HY-NWRYAFWGEAILMFPFAVLGF  237 (276)
Q Consensus       167 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~-~w~~~~~~~~~~~~~~~~~~~  237 (276)
                      |.+......++++-+.+| |+-+..+|+|.+..++|..+++.+.-.+. +. +||....+-+.++++.++.++
T Consensus       112 gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~Wl  183 (395)
T COG2807         112 GIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWL  183 (395)
T ss_pred             hHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999998 88899999999999999999999888888 44 799999888888766665544

>PRK09952 shikimate transporter; Provisional

Probab=99.48  E-value=3.5e-12  Score=112.84  Aligned_cols=149  Identities=15%  Similarity=0.072  Sum_probs=111.1

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhh---h-hhHHHHHHHHHHHHh
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGF---S-FSFWMIAICRMLVGV  166 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~r~l~G~  166 (276)
                      ++.+++|.+......+.....+...++.++.|+++||+|||+++.++.++.+++.+.+..   . ++.+.+++..++.|+
T Consensus       276 y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  355 (438)
T PRK09952        276 YSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANI  355 (438)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            556778888776666666667777889999999999999999988887766554433222   1 234444556677788


Q ss_pred             hhhhhhhcHHHHHhhcCcchhhhHHHHHHHH-HhhhhhhHHHHHHHhhc--c-cchhHHHHHhHHHHHHHHHHHHhh
Q 023846          167 GEASFISLAAPFIDDNAPVAKKTAWLGVFYM-CLPSGYAIGYVYGGWVG--H-YNWRYAFWGEAILMFPFAVLGFVM  239 (276)
Q Consensus       167 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~~~~~l~--~-~~w~~~~~~~~~~~~~~~~~~~~~  239 (276)
                      +.+...+...+++.|.+|.+.|+.+.++.+. +..+|+.++|.+.+++.  . .+|+..+...++..++..+..+..
T Consensus       356 ~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        356 AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            8888888889999999999999999888554 45589999999999986  2 358888887777766665555443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.47  E-value=3.5e-12  Score=110.82  Aligned_cols=139  Identities=15%  Similarity=0.087  Sum_probs=118.7

Q ss_pred             cccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh
Q 023846           92 IQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASF  171 (276)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~  171 (276)
                      +.++.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+..++.+.+++..++.|++.+..
T Consensus       231 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  310 (382)
T PRK11128        231 YWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVC  310 (382)
T ss_pred             HHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            33568999999999999999999999999999999999999999999999998888888999999999999999999998


Q ss_pred             hhcHHHHHhhcCcchhhhHHHHHHH-HHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHH
Q 023846          172 ISLAAPFIDDNAPVAKKTAWLGVFY-MCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPF  232 (276)
Q Consensus       172 ~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~  232 (276)
                      .+....++.+. +++++++..++++ ....+|..+||.++|.+. ..|+ ..|+..+++.++.
T Consensus       311 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~  371 (382)
T PRK11128        311 HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPA  371 (382)
T ss_pred             HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence            89888888887 5666788899886 556778899999999998 6677 4666666655433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.47  E-value=2e-12  Score=114.88  Aligned_cols=149  Identities=11%  Similarity=-0.021  Sum_probs=105.7

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhcc--CChhhH-HHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHH
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSV--NPFRLI-GVGLTVWTLAVVGCGF--SFSFWMIAICRMLVG  165 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--grr~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~r~l~G  165 (276)
                      ++++++|++..+.++....+.++..++.++.|+++||+  +||... +....+..++.++..+  ..+.+...+..++.|
T Consensus       279 ~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g  358 (452)
T PRK11273        279 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIG  358 (452)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHH
Confidence            55666889988999999999999999999999999999  555432 2222333333322222  234444445555555


Q ss_pred             hhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhH-HHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhh
Q 023846          166 VGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAI-GYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVM  239 (276)
Q Consensus       166 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~  239 (276)
                      .+..........++.|.+|++.||+++|+.+....+|..+ +|.+.+++. ..||+..|++.++.+++..+....+
T Consensus       359 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  434 (452)
T PRK11273        359 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  434 (452)
T ss_pred             HHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            5433333333456789999999999999999888888655 799999998 8899999998888777766666555

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.45  E-value=9.2e-12  Score=111.63  Aligned_cols=151  Identities=9%  Similarity=0.068  Sum_probs=117.4

Q ss_pred             cccccccCCCchhHHHHHH-HHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHH---Hhhh-hhHHHHHHHHHHH
Q 023846           90 TGIQGDFDLNNFQDGVLSS-AFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVG---CGFS-FSFWMIAICRMLV  164 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~r~l~  164 (276)
                      |++.+++|++..+.+++.. ...++.+++.++.|+++||+|+|+.+.++.++.++..++   .+.. ++.+.+.+.-++.
T Consensus       247 ~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~  326 (491)
T PRK11010        247 TFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFE  326 (491)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            4556778999999999974 556899999999999999999998877766655544332   2232 3555555556665


Q ss_pred             HhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhc
Q 023846          165 GVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMK  240 (276)
Q Consensus       165 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~  240 (276)
                      .++.+...+...++..+..+++.+++..++.+....+|..+++.+.|++. ..||+..|.+.++++++..+..++.+
T Consensus       327 ~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        327 NLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            65556666667888889999999999999999999999998888888888 78999999998888877766666553

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.44  E-value=5.1e-12  Score=113.73  Aligned_cols=155  Identities=12%  Similarity=0.016  Sum_probs=102.6

Q ss_pred             cccccccCCCchhHHH------------HHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhh----
Q 023846           90 TGIQGDFDLNNFQDGV------------LSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFS----  153 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~------------~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~----  153 (276)
                      |.+.++.|.+..+.+.            ...+..++..++.++.++++||+|||++++++..+.+++.++.++..+    
T Consensus       312 p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~  391 (502)
T TIGR00887       312 KVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLST  391 (502)
T ss_pred             HHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            4555667765432211            233444566678899999999999999998888777776655554321    


Q ss_pred             HHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-c----------cchhHHH
Q 023846          154 FWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-H----------YNWRYAF  222 (276)
Q Consensus       154 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~----------~~w~~~~  222 (276)
                      ...+...-+...++.....+....+.+|.+|.+.|+++.|+.+....+|.+++|.+.+++. .          .++...|
T Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  471 (502)
T TIGR00887       392 HGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVL  471 (502)
T ss_pred             hHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHH
Confidence            1111111111122222334556677899999999999999999999999999999988876 2          2345677


Q ss_pred             HHhHHHHHHHHHHHHhhcccccC
Q 023846          223 WGEAILMFPFAVLGFVMKPLQLK  245 (276)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~  245 (276)
                      ++.+++.++..+.. ++.||++.
T Consensus       472 ~i~~~~~~~~~i~~-~~lpEt~~  493 (502)
T TIGR00887       472 EIFALFMFLGILFT-LLIPETKG  493 (502)
T ss_pred             HHHHHHHHHHHHHh-eEeccCCC
Confidence            77777766655543 45576543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK15075 citrate-proton symporter; Provisional

Probab=99.44  E-value=4.6e-12  Score=111.95  Aligned_cols=129  Identities=11%  Similarity=-0.001  Sum_probs=95.6

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHH-HH---hhhhhHHHHHHHHHHHHh
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVV-GC---GFSFSFWMIAICRMLVGV  166 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~r~l~G~  166 (276)
                      ++++.+|++..+.++....+.++..++.++.|+++||+|||+++.++..+.++..+ ..   ...+++..+.+..++.|+
T Consensus       264 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (434)
T PRK15075        264 FGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSF  343 (434)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            44556899988889999899999999999999999999999998876554433221 11   112344444555666677


Q ss_pred             hhhhhhhcHHHHHhhcCcchhhhHHHHHHHH-HhhhhhhHHHHHHHhhc-ccchh
Q 023846          167 GEASFISLAAPFIDDNAPVAKKTAWLGVFYM-CLPSGYAIGYVYGGWVG-HYNWR  219 (276)
Q Consensus       167 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~~~~~l~-~~~w~  219 (276)
                      +.+...+....++.|.+|+++|++.+++.+. +..++..++|.+.+++. ..|++
T Consensus       344 ~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        344 LYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            7777777777889999999999999998654 44445778999999887 66654

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.44  E-value=9.6e-13  Score=113.69  Aligned_cols=144  Identities=19%  Similarity=0.200  Sum_probs=127.8

Q ss_pred             cCCCchhHHHHHHHHHHHHHHHHhHHHHhhhc-cCChhhHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHhhhhhhh
Q 023846           96 FDLNNFQDGVLSSAFMVGLLVASPIFASLARS-VNPFRLIGVGLTVWTLAVVGCGFSF--SFWMIAICRMLVGVGEASFI  172 (276)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~~~~~  172 (276)
                      +|++++++.-+.+.|..-.-+..+++||++|| +|+|+++..|.+++++|.++.+...  +...++++.++.++|.|..-
T Consensus        56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K  135 (498)
T COG3104          56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK  135 (498)
T ss_pred             CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence            44999998888888888888999999999999 6999999999999999999999884  78889999999999999999


Q ss_pred             hcHHHHHhhcCcch--hhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhh
Q 023846          173 SLAAPFIDDNAPVA--KKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVM  239 (276)
Q Consensus       173 ~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~  239 (276)
                      +...++++|.+|++  +|-..+++++++.++|+.++|++.+++. +.||...|...++-....++..++.
T Consensus       136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~  205 (498)
T COG3104         136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLG  205 (498)
T ss_pred             ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999865  4778899999999999999999999999 9999999999887765555554444

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.44  E-value=9.1e-13  Score=116.55  Aligned_cols=154  Identities=12%  Similarity=-0.025  Sum_probs=107.1

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHH---HHHHHHhh--hhhHHHHHHHHHHHH
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWT---LAVVGCGF--SFSFWMIAICRMLVG  165 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~r~l~G  165 (276)
                      ++++..|.+..+.++....+.++..++.++.|++.||+++++....+..+..   ++.+....  ..+.+...+..++.|
T Consensus       277 ~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  356 (438)
T TIGR00712       277 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIG  356 (438)
T ss_pred             HHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence            5556679999999999999999999999999999999965432223332221   12222112  123333334445555


Q ss_pred             hhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhh-hHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhcccc
Q 023846          166 VGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGY-AIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQ  243 (276)
Q Consensus       166 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  243 (276)
                      ++...........+.|.+|+++|++++|+.+....+|. +++|.+.|.+. +.||.+.|++..++.++..+..++++||+
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (438)
T TIGR00712       357 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGE  436 (438)
T ss_pred             HHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            54322222223467899999999999999998888764 68999999998 78999999988887777777777777664


Q ss_pred             c
Q 023846          244 L  244 (276)
Q Consensus       244 ~  244 (276)
                      +
T Consensus       437 ~  437 (438)
T TIGR00712       437 K  437 (438)
T ss_pred             c
Confidence            3

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.43  E-value=5.9e-12  Score=110.70  Aligned_cols=147  Identities=9%  Similarity=-0.043  Sum_probs=109.0

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCC-hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNP-FRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGE  168 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  168 (276)
                      +++.+++|++..++|++.+++.++.+++++++|+++||+|+ |+++.++.++..+...+..+.++++.+.+.|++.|++.
T Consensus        27 ~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  106 (418)
T TIGR00889        27 SYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAY  106 (418)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            57788899999999999999999999999999999999965 77888888888888888888899999999999999987


Q ss_pred             hhhhhcHHHHHh--------hcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhh
Q 023846          169 ASFISLAAPFID--------DNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVM  239 (276)
Q Consensus       169 ~~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~  239 (276)
                      +...+...++..        |......|.+..|      .+|.+++|.+++.+. ...|+. |++.+++.++..++ .+.
T Consensus       107 ~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~~-f~~~~~~~~~~~~~-~~~  178 (418)
T TIGR00889       107 MPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNIQ-LYITAGSSALLGVF-ALT  178 (418)
T ss_pred             ccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhHH-HHHHHHHHHHHHHH-Hhc
Confidence            766665555432        2122223444444      468888999888886 444654 44555555544443 334


Q ss_pred             ccccc
Q 023846          240 KPLQL  244 (276)
Q Consensus       240 ~~~~~  244 (276)
                      .||.+
T Consensus       179 ~~e~~  183 (418)
T TIGR00889       179 LPDIP  183 (418)
T ss_pred             CCCCC
Confidence            45543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.43  E-value=1e-11  Score=105.94  Aligned_cols=150  Identities=15%  Similarity=0.114  Sum_probs=126.9

Q ss_pred             ccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhh
Q 023846           89 GTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFS-FSFWMIAICRMLVGVG  167 (276)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~  167 (276)
                      -|.+++..|++.+.++++.-.|.++.++|+++.|++.|| +.|+.+.....+.++..+...+. ++.+..++.-++.|++
T Consensus       235 ~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a  313 (394)
T COG2814         235 RPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFA  313 (394)
T ss_pred             HHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            378899999999999999999999999999999999999 89999888877777766655544 4566667777778888


Q ss_pred             hhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhc
Q 023846          168 EASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMK  240 (276)
Q Consensus       168 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~  240 (276)
                      .+.........+++ .-++.+..+.++.....++|..+|..++|.+. ++|+..+.++.+++.++.+++.+...
T Consensus       314 ~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~  386 (394)
T COG2814         314 FSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSA  386 (394)
T ss_pred             hhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777 44588999999999999999999999999999 99999999999998877777665543

>PRK10504 putative transporter; Provisional

Probab=99.42  E-value=1.3e-11  Score=110.12  Aligned_cols=125  Identities=11%  Similarity=0.129  Sum_probs=105.7

Q ss_pred             cccc-cccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHH
Q 023846           90 TGIQ-GDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFS---FSFWMIAICRMLVG  165 (276)
Q Consensus        90 ~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G  165 (276)
                      |++. ..+|.++.+.++....+.++..++.++.|++.||+|||+++.++.++.++...+..+.   ++.+.+.+..++.|
T Consensus       285 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  364 (471)
T PRK10504        285 PVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQG  364 (471)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence            3443 4588899999999999999999999999999999999999999988888776655543   33444556677888


Q ss_pred             hhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc
Q 023846          166 VGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG  214 (276)
Q Consensus       166 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  214 (276)
                      ++.+...+....++.+..|++.++.+.++.++...+|..+|+.+++.+.
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll  413 (471)
T PRK10504        365 MVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLL  413 (471)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988888888999999999999999999999999999999999988875

>TIGR00898 2A0119 cation transport protein

Probab=99.42  E-value=1.7e-11  Score=110.40  Aligned_cols=137  Identities=14%  Similarity=-0.018  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHhhhhhhhhcHHHHHhhc
Q 023846          105 VLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSF--WMIAICRMLVGVGEASFISLAAPFIDDN  182 (276)
Q Consensus       105 ~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~r~l~G~~~~~~~~~~~~~i~~~  182 (276)
                      +......+..+++.++.+++.||+|||+.+.++.++.+++.++..+.++.  +..++..++.+++.+..++....+..|.
T Consensus       359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  438 (505)
T TIGR00898       359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL  438 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            33445566778889999999999999999999999888888777766543  4555566777777788888889999999


Q ss_pred             CcchhhhHHHHHHHHHhhhhhhHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhhcccc
Q 023846          183 APVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGHYNWRYAFWGEAILMFPFAVLGFVMKPLQ  243 (276)
Q Consensus       183 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  243 (276)
                      +|++.|++++|+.+....+|.+++|.+.+ +...++..++++.++..++..++.++ .||+
T Consensus       439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-lpet  497 (505)
T TIGR00898       439 YPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALLAGILTLF-LPET  497 (505)
T ss_pred             ccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHc-CcCC
Confidence            99999999999999999999999999988 55556777888877777666555543 4554

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.41  E-value=1.2e-11  Score=108.94  Aligned_cols=136  Identities=13%  Similarity=0.095  Sum_probs=101.4

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh--h
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGV--G  167 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~--~  167 (276)
                      |.+.++.|.+..+.+.+.+.+.++..++.++.|++.||+|||+.+..+.++..+..+.....++.....+.-++.|+  +
T Consensus       255 ~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (426)
T PRK12307        255 PTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMAT  334 (426)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence            45555678888889999999999999999999999999999999988887776665544433221112222233333  2


Q ss_pred             hhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHh
Q 023846          168 EASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGE  225 (276)
Q Consensus       168 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~  225 (276)
                      .....+..+.++.|.+|+++|++++|+......+|..++|.+.+++. ..|+....++.
T Consensus       335 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~  393 (426)
T PRK12307        335 NVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFI  393 (426)
T ss_pred             cccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            22334556678899999999999999999999999999999999998 77766543333

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.40  E-value=8e-12  Score=107.18  Aligned_cols=125  Identities=17%  Similarity=0.271  Sum_probs=113.1

Q ss_pred             ccccc-ccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHhh
Q 023846           90 TGIQG-DFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFS-FWMIAICRMLVGVG  167 (276)
Q Consensus        90 ~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~l~G~~  167 (276)
                      |.+.+ .+|.+..+.+++.+...++..++.++.+++.||++||+.+..+..+.+++.++..+.++ .+.+.+..++.|++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  314 (365)
T TIGR00900       235 PYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVG  314 (365)
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Confidence            45544 48999999999999999999999999999999999999999888888888777777774 88888999999999


Q ss_pred             hhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc
Q 023846          168 EASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG  214 (276)
Q Consensus       168 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  214 (276)
                      .+...+...+++.|..|+++|++..++.+....+|..++|.++|.+.
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~  361 (365)
T TIGR00900       315 YGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLA  361 (365)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999876

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.40  E-value=6.6e-12  Score=123.52  Aligned_cols=146  Identities=16%  Similarity=0.078  Sum_probs=125.1

Q ss_pred             cccccccCCCch-hHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 023846           90 TGIQGDFDLNNF-QDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGE  168 (276)
Q Consensus        90 ~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  168 (276)
                      +++.+.+|++.. +.+++.+...++.++++++.|++.||+++++.+.++.++.+++.++..+..+.+.++++.++.|++.
T Consensus       257 ~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  336 (1146)
T PRK08633        257 AYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSA  336 (1146)
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            355677899988 8999999999999999999999999999999999998888888888888888888889999999999


Q ss_pred             hhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc--ccchhHHHHHhHHHHHHHHHH
Q 023846          169 ASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG--HYNWRYAFWGEAILMFPFAVL  235 (276)
Q Consensus       169 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~--~~~w~~~~~~~~~~~~~~~~~  235 (276)
                      +...+...+++.+..|++.||+++++.++...+|.++++.+++.+.  ..++...|++.+.+.++..+.
T Consensus       337 ~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  405 (1146)
T PRK08633        337 GLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLY  405 (1146)
T ss_pred             HHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            9998889999999999999999999999999999988888887776  345666676666554444333

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.40  E-value=2.2e-11  Score=107.48  Aligned_cols=123  Identities=16%  Similarity=0.152  Sum_probs=103.4

Q ss_pred             ccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhh
Q 023846           95 DFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFS-FSFWMIAICRMLVGVGEASFIS  173 (276)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~~~~~~  173 (276)
                      .++ +....+++.++..++.+++.++++++.||+|+|+++.++.++.+++.++..+. ++.+.+++..++.|++.+...+
T Consensus       252 ~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  330 (437)
T TIGR00792       252 VLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTG  330 (437)
T ss_pred             ecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHH
Confidence            344 45667888888899999999999999999999999999998888887766655 4667777888899999999999


Q ss_pred             cHHHHHhhcCc-------chhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccch
Q 023846          174 LAAPFIDDNAP-------VAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNW  218 (276)
Q Consensus       174 ~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w  218 (276)
                      ...++++|..|       ++.+|...|+.+....+|..+++.+.+.+. ..||
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       331 LVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999998875       456799999999999999999999998886 4444

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.40  E-value=5.7e-12  Score=109.97  Aligned_cols=141  Identities=9%  Similarity=0.070  Sum_probs=121.3

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHH
Q 023846           97 DLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAA  176 (276)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~  176 (276)
                      +.+....|.+.+...+...++.+..|++.||+|+|+.+.++..+.++...+...+++.+.+++.+++.|++.........
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  329 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF  329 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566778889999999999999999999999999999999998888888878888999889999999999877777777


Q ss_pred             HHHhhcCcchhhhHHHHH-HHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHH
Q 023846          177 PFIDDNAPVAKKTAWLGV-FYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGF  237 (276)
Q Consensus       177 ~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~  237 (276)
                      .++.+..+++.+++..+. ++....+|.++++.++|++. ..||+.+|++.+++.++..++..
T Consensus       330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~  392 (396)
T TIGR00882       330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISV  392 (396)
T ss_pred             HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            788888888888887766 67889999999999999999 78999999999888766665543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.40  E-value=2.6e-11  Score=105.57  Aligned_cols=155  Identities=9%  Similarity=-0.118  Sum_probs=115.2

Q ss_pred             CccccccccCCCchhHHHH--HHHHHHHHHHHHhHH-HHhhhccCChhhHHHHHHHH-HHHHHHHh---hhhh-HHHHHH
Q 023846           88 PGTGIQGDFDLNNFQDGVL--SSAFMVGLLVASPIF-ASLARSVNPFRLIGVGLTVW-TLAVVGCG---FSFS-FWMIAI  159 (276)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~-g~l~d~~grr~~~~~~~~~~-~~~~~~~~---~~~~-~~~~~~  159 (276)
                      .+|.+.++.|.+.+++|++  .++..+...+.++++ ++..||+|||+..++++.+. .+.....+   ...+ ...++.
T Consensus        23 ~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (390)
T TIGR02718        23 ALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVG  102 (390)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHH
Confidence            4578889999999999997  466788888888888 45799999999876665432 21222222   2222 334445


Q ss_pred             HHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHh
Q 023846          160 CRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFV  238 (276)
Q Consensus       160 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~  238 (276)
                      ..++.++..+...+....+..|..++++++...+....+..+|.++|+...+++. ..|||..|++.+++.++..+..++
T Consensus       103 ~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~  182 (390)
T TIGR02718       103 LLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLW  182 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            5556667777777777888889888888888888888888999999998888888 889999999999887766666555


Q ss_pred             hccc
Q 023846          239 MKPL  242 (276)
Q Consensus       239 ~~~~  242 (276)
                      +.|+
T Consensus       183 ~~~~  186 (390)
T TIGR02718       183 LKDR  186 (390)
T ss_pred             cCCC
Confidence            5444

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.39  E-value=1.3e-12  Score=112.48  Aligned_cols=132  Identities=14%  Similarity=0.082  Sum_probs=99.3

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccC-ChhhHH-HHH-HHHHHHHHHHhh--hhhHHHHHHHHHHHH
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVN-PFRLIG-VGL-TVWTLAVVGCGF--SFSFWMIAICRMLVG  165 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g-rr~~~~-~~~-~~~~~~~~~~~~--~~~~~~~~~~r~l~G  165 (276)
                      ++.+++|.+..+.+++.+.+.++..++.++.|++.||+. +|+... ... ....++......  ..+...+.+..++.|
T Consensus       242 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  321 (379)
T TIGR00881       242 YLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALG  321 (379)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHH
Confidence            556778999999999999999999999999999999864 333222 211 112222222222  234555666677777


Q ss_pred             hhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHH
Q 023846          166 VGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAF  222 (276)
Q Consensus       166 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~  222 (276)
                      +......+....++.|.+|+++|+++.|+.+....+|..++|.+.|.+. ..||++.|
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       322 FLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            7666666666778999999999999999999999999999999999998 88998754

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.38  E-value=3.1e-11  Score=106.62  Aligned_cols=148  Identities=9%  Similarity=-0.002  Sum_probs=97.5

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHh--h--hhhHHHHHHHHHHHHh
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCG--F--SFSFWMIAICRMLVGV  166 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~r~l~G~  166 (276)
                      ++.+++|.+..+.++..++..++..+++++.|+++||+|||+.+.++..+.++..+...  .  .++....+..-.+.++
T Consensus       269 ~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (432)
T PRK10406        269 YLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALL  348 (432)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            45567899988889988888888899999999999999999988776655433332111  1  1233322222222333


Q ss_pred             hhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhh-hhhHHHHHHHhhcccc-hhHHHHHhHHHHHHHHHHHHh
Q 023846          167 GEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPS-GYAIGYVYGGWVGHYN-WRYAFWGEAILMFPFAVLGFV  238 (276)
Q Consensus       167 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~-w~~~~~~~~~~~~~~~~~~~~  238 (276)
                      +.+...+....+++|++|++.|++++|+.+...++ .....|.+.+.+...| |...++..++..++..+..++
T Consensus       349 ~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        349 IVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             HHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            33444455667889999999999999998876554 3444777777665334 555666555555555444444

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.37  E-value=5.7e-11  Score=104.03  Aligned_cols=144  Identities=11%  Similarity=-0.007  Sum_probs=112.8

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHH
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFS-----FSFWMIAICRMLVG  165 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G  165 (276)
                      .+.+++|.++.+.++......++..++.++.|++.||+++|+.+.++..+.+++.++..+.     .+.+.++++.++.|
T Consensus       241 ~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (406)
T PRK15402        241 ILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYA  320 (406)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHH
Confidence            3456789999999998888888899999999999999999999999888877777666543     35666778889999


Q ss_pred             hhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHH
Q 023846          166 VGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVL  235 (276)
Q Consensus       166 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~  235 (276)
                      ++.+...+......... ++++||++.++++....+|..+|+.+++.+. ..++....+..++..++..++
T Consensus       321 ~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  390 (406)
T PRK15402        321 FGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLL  390 (406)
T ss_pred             HHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHH
Confidence            99888777666655444 4489999999999999999999999999987 666665555544444444333

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.36  E-value=6.7e-11  Score=98.89  Aligned_cols=153  Identities=13%  Similarity=0.084  Sum_probs=115.3

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhh
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEAS  170 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~  170 (276)
                      .+-+++|++..+++.+........++.+.+.|.++||+|||+.-+..+++.+++++ +-..++++.++++|++.|++.+.
T Consensus        59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSL  137 (354)
T PF05631_consen   59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSL  137 (354)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHH
Confidence            44568999999999999999999999999999999999999999999999999886 45568999999999999999999


Q ss_pred             hhhcHHHHH-hhc----CcchhhhHHHHHHH-HHhhhhhhHHHHHHHhhc-c--cchhHHHHHhHHHHHHHHHHHHhhcc
Q 023846          171 FISLAAPFI-DDN----APVAKKTAWLGVFY-MCLPSGYAIGYVYGGWVG-H--YNWRYAFWGEAILMFPFAVLGFVMKP  241 (276)
Q Consensus       171 ~~~~~~~~i-~~~----~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~-~--~~w~~~~~~~~~~~~~~~~~~~~~~~  241 (276)
                      .+..--++. .|+    +|++..+..++... ....+-.+++.+++.++. .  .|-..+|.....+.++..+++....+
T Consensus       138 LfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~  217 (354)
T PF05631_consen  138 LFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWP  217 (354)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhccc
Confidence            999888875 444    34344444444333 223333444555555555 3  34578898888877777776665545


Q ss_pred             ccc
Q 023846          242 LQL  244 (276)
Q Consensus       242 ~~~  244 (276)
                      |..
T Consensus       218 ENy  220 (354)
T PF05631_consen  218 ENY  220 (354)
T ss_pred             ccC
Confidence            543

>TIGR00788 fbt folate/biopterin transporter

Probab=99.36  E-value=1.7e-11  Score=109.26  Aligned_cols=151  Identities=12%  Similarity=0.023  Sum_probs=115.6

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccC-----ChhhHHHHHHHH-HHHHHHHhhhhhHHHH-HHHHH
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVN-----PFRLIGVGLTVW-TLAVVGCGFSFSFWMI-AICRM  162 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g-----rr~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~r~  162 (276)
                      +.+.+++|++.++++.+.+...+...+-.+ +|+++||++     ||+.++++.++. .+.....+..++.... .+..+
T Consensus        50 ~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~  128 (468)
T TIGR00788        50 PMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIF  128 (468)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            677888999999999999999999988666 999999997     788888887776 3444444444554444 44889


Q ss_pred             HHHhhhhhhhhcHHHHHhhcCcchhhhHH---HHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHh
Q 023846          163 LVGVGEASFISLAAPFIDDNAPVAKKTAW---LGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFV  238 (276)
Q Consensus       163 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~---~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~  238 (276)
                      +.+++.+....+.-++..|..+ +++...   .++......+|.++|+.++|.+. ..+|+..|++.+++.++..+. .+
T Consensus       129 l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~-~~  206 (468)
T TIGR00788       129 LAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFV-SN  206 (468)
T ss_pred             HHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH-HH
Confidence            9999999999999999999998 554443   33444445689999999999998 779999999998877666333 34


Q ss_pred             hcccc
Q 023846          239 MKPLQ  243 (276)
Q Consensus       239 ~~~~~  243 (276)
                      +.+|+
T Consensus       207 ~~~E~  211 (468)
T TIGR00788       207 LSKER  211 (468)
T ss_pred             hcccc
Confidence            44553

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.36  E-value=5.3e-11  Score=100.40  Aligned_cols=128  Identities=13%  Similarity=0.076  Sum_probs=105.0

Q ss_pred             ccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhc
Q 023846           95 DFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISL  174 (276)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~  174 (276)
                      .+|+++.+.++..+.+..+.+++.+..+++.||+|+|+.+.++..+.+++.++....++... ..+-++.|++.+..+|.
T Consensus       172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~  250 (310)
T TIGR01272       172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPT  250 (310)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999998888888877766655554333 34556889999999999


Q ss_pred             HHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHh
Q 023846          175 AAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGE  225 (276)
Q Consensus       175 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~  225 (276)
                      ..+...+..|++ .+++.++. ....+|.+++|.+.|.+. ..|.++.|++.
T Consensus       251 ~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~  300 (310)
T TIGR01272       251 IFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALP  300 (310)
T ss_pred             HHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHH
Confidence            999998888743 45666665 556789999999999988 67888888744

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.36  E-value=5e-11  Score=104.61  Aligned_cols=156  Identities=11%  Similarity=-0.056  Sum_probs=121.8

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhh---hHH------HHHHHH
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSF---SFW------MIAICR  161 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~---~~~------~~~~~r  161 (276)
                      .+-++-|++..+.-+......+...+..+.+.++.||+|||+.++.+..+..+..+++....   +..      ..+++.
T Consensus       295 ~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~  374 (485)
T KOG0569|consen  295 SIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAI  374 (485)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            66777899999999999999999999999999999999999999999999888777665442   111      123344


Q ss_pred             HHHHhhhhh-hhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhh
Q 023846          162 MLVGVGEAS-FISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVM  239 (276)
Q Consensus       162 ~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~  239 (276)
                      ++..++.+. ..|+..-+.+|++|++.|+.++++......+..++-...-..+. ..|- +.|....+++++..+..++.
T Consensus       375 ~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~  453 (485)
T KOG0569|consen  375 FLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRY  453 (485)
T ss_pred             HHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHh
Confidence            444443333 35777888999999999999999999998888887666555555 4444 78888888888888888888


Q ss_pred             cccccCCC
Q 023846          240 KPLQLKGF  247 (276)
Q Consensus       240 ~~~~~~~~  247 (276)
                      .||++.+.
T Consensus       454 lPETkgr~  461 (485)
T KOG0569|consen  454 LPETKGRT  461 (485)
T ss_pred             CcccCCCC
Confidence            99987543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.35  E-value=7.4e-11  Score=102.75  Aligned_cols=144  Identities=12%  Similarity=-0.063  Sum_probs=110.1

Q ss_pred             ccccccCCCchhHHHHHHHHHH-HHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhh------hhhHHHHHHHHHH
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMV-GLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGF------SFSFWMIAICRML  163 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~l  163 (276)
                      .+.+|.|+++++.|++.....+ ...++.++.|++.||+|+|+.+.++..+.++..+....      .++...+.....+
T Consensus       233 ~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (390)
T TIGR02718       233 LYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAF  312 (390)
T ss_pred             HHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHH
Confidence            3345689999999999887764 66778899999999999999998877665333222211      1233344455566


Q ss_pred             HHhhhhhhhhcHHHHHhhcCcc-hhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHH
Q 023846          164 VGVGEASFISLAAPFIDDNAPV-AKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAV  234 (276)
Q Consensus       164 ~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~  234 (276)
                      .+++.+...+...+.+.+..++ +.+++.+++.+...++|..+||.++|.+. ..||+..|+..+++.++..+
T Consensus       313 ~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       313 GSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            6777777778788887787776 88999999999999999999999999998 78999999988776655443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10054 putative transporter; Provisional

Probab=99.35  E-value=2.3e-11  Score=106.17  Aligned_cols=143  Identities=18%  Similarity=0.112  Sum_probs=117.6

Q ss_pred             cccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhh
Q 023846           94 GDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFS-FSFWMIAICRMLVGVGEASFI  172 (276)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~~~~~  172 (276)
                      .+.+.+....+++.+.+.+.....+++.|++.||+++|+.+.+++.+..++.....+. ++.+.+.+..++.|+|.+...
T Consensus       237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  316 (395)
T PRK10054        237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYA  316 (395)
T ss_pred             cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence            3456677777888888888888888999999999999999999988888888777664 577777788899999998888


Q ss_pred             hcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHH
Q 023846          173 SLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGF  237 (276)
Q Consensus       173 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~  237 (276)
                      +....++.+..|++.|+++++..+ ...+|..+||.++|.+. +.|....|++.+...++..++.+
T Consensus       317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            888899999999999999988765 55689999999999998 77888888887665544444433

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.33  E-value=1.5e-11  Score=104.25  Aligned_cols=145  Identities=14%  Similarity=0.112  Sum_probs=126.8

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhh
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEAS  170 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~  170 (276)
                      +-.+++|++..+...+.....+..+++++++|++.||+|.|+++.+++++..+.++..-+...-..+.++-.+.|...|+
T Consensus       278 fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~  357 (438)
T COG2270         278 FGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGG  357 (438)
T ss_pred             HHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcch
Confidence            33459999999999999999999999999999999999999999999999988888777777777777888899999999


Q ss_pred             hhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc--ccchhHHHHHhHHHHHHHHHH
Q 023846          171 FISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG--HYNWRYAFWGEAILMFPFAVL  235 (276)
Q Consensus       171 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~--~~~w~~~~~~~~~~~~~~~~~  235 (276)
                      .++.+-++.++..|+++-++.+|++......+..+||.+.+.+.  ...-|..+....++..+.+++
T Consensus       358 ~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~  424 (438)
T COG2270         358 AQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLL  424 (438)
T ss_pred             HHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhh
Confidence            99999999999999999999999999999999999999999888  556777777665554444333

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.33  E-value=8.7e-11  Score=101.16  Aligned_cols=146  Identities=14%  Similarity=0.172  Sum_probs=127.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHH
Q 023846           98 LNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAP  177 (276)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~  177 (276)
                      .+....|++.+...+.-++...+..++.+|+|.|+.++++..++++-.++++++++.+.+.+.+.+.|+-.+.......-
T Consensus       256 ~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fk  335 (412)
T PF01306_consen  256 QGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFK  335 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCcchhhhHHHHHH-HHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhcccc
Q 023846          178 FIDDNAPVAKKTAWLGVF-YMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQ  243 (276)
Q Consensus       178 ~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  243 (276)
                      |+++.+|++..++...+. +...++|.++.+.++|.+. +.|.+.+|++.+.+.++..++..+..+++
T Consensus       336 YI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~  403 (412)
T PF01306_consen  336 YITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKD  403 (412)
T ss_dssp             HHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred             HHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence            999999999888888874 7888999999999999999 89999999999998887777777765443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.33  E-value=2.2e-11  Score=119.77  Aligned_cols=146  Identities=13%  Similarity=0.081  Sum_probs=119.4

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhh-------------------
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFS-------------------  151 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~-------------------  151 (276)
                      ++.+.+|.+..+.|++.+.+.++.++++++.|+++++.++++.+..+.++.+++.+.+.+.                   
T Consensus       251 ~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  330 (1140)
T PRK06814        251 LAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLS  330 (1140)
T ss_pred             HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhc
Confidence            5566789999999999999999999999999999998887777666666665555444432                   


Q ss_pred             -hhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc--ccchhHHHHHhHHH
Q 023846          152 -FSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG--HYNWRYAFWGEAIL  228 (276)
Q Consensus       152 -~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~--~~~w~~~~~~~~~~  228 (276)
                       .+.+.++++.++.|++.+...+...+++.+..|++.||+++|+.++...+|..+++++.+.+.  ..++...+++.++.
T Consensus       331 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~  410 (1140)
T PRK06814        331 KRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA  410 (1140)
T ss_pred             ccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence             677788888999999999999999999999999999999999999999999999999988886  45677777666655


Q ss_pred             HHHHHHHH
Q 023846          229 MFPFAVLG  236 (276)
Q Consensus       229 ~~~~~~~~  236 (276)
                      .++..+..
T Consensus       411 ~~~~~~~~  418 (1140)
T PRK06814        411 NLIVAILI  418 (1140)
T ss_pred             HHHHHHHH
Confidence            44444333

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.32  E-value=1.5e-10  Score=100.64  Aligned_cols=150  Identities=14%  Similarity=0.060  Sum_probs=111.8

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHhhh
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGF-SFSFWMIAICRMLVGVGE  168 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~l~G~~~  168 (276)
                      |++.+.+|.++.+.+++.+...++..++.++.|++.||+|+|+.+.++..+.+++.++... .++.+..++..++.+++.
T Consensus       224 ~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~  303 (382)
T PRK10091        224 PYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGL  303 (382)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            4666678999999999999999999999999999999999999999888888877765543 445556666666777765


Q ss_pred             hhhhhcHHH-HHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc--ccchhHHHHHhHHHHHHHHHHHHhhcc
Q 023846          169 ASFISLAAP-FIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG--HYNWRYAFWGEAILMFPFAVLGFVMKP  241 (276)
Q Consensus       169 ~~~~~~~~~-~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~--~~~w~~~~~~~~~~~~~~~~~~~~~~~  241 (276)
                      ....+.... ...+..+.+.++...  .+....+|..+||.++|++.  ..+|++.+.+.+++..+.......+.+
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (382)
T PRK10091        304 FALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGR  377 (382)
T ss_pred             HhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHhh
Confidence            554443343 344444555555543  46678899999999999987  468999999988776665555554433

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.32  E-value=1.2e-10  Score=93.75  Aligned_cols=175  Identities=19%  Similarity=0.187  Sum_probs=126.3

Q ss_pred             CCChhhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHH
Q 023846           44 WFTPGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFAS  123 (276)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~  123 (276)
                      ...+.+++.++++++.........++.                   -.+++.||+|+...+.+.+......++.+++.|.
T Consensus       262 f~ppfw~~~iicv~yyva~fPFi~lg~-------------------~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~  322 (459)
T KOG4686|consen  262 FYPPFWVLVIICVLYYVAWFPFITLGP-------------------MFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGA  322 (459)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHhhhhH-------------------HHHHHhhCCChhhccchhhhhhhhhhhhhhhHHH
Confidence            344455667777777666665555543                   2668999999999999999988889999999999


Q ss_pred             hhhccCChhhHHHHHHHHH-HHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhh
Q 023846          124 LARSVNPFRLIGVGLTVWT-LAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSG  202 (276)
Q Consensus       124 l~d~~grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  202 (276)
                      ++||+|++...+.+..+.. ++-.+..+  +++.=..+..+.|+............++...|.++.|++.|..+...++|
T Consensus       323 i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLg  400 (459)
T KOG4686|consen  323 ISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLG  400 (459)
T ss_pred             hHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhh
Confidence            9999999987776654443 33333332  34444567778888877776667778888999999999999999999999


Q ss_pred             hhHHHHHHHhhc-c---cchhHHHHHhHHHHHHHHHHHHhh
Q 023846          203 YAIGYVYGGWVG-H---YNWRYAFWGEAILMFPFAVLGFVM  239 (276)
Q Consensus       203 ~~~g~~~~~~l~-~---~~w~~~~~~~~~~~~~~~~~~~~~  239 (276)
                      -.+-|++++++. +   +.|--.|.+......+..+.+++.
T Consensus       401 la~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~  441 (459)
T KOG4686|consen  401 LAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFY  441 (459)
T ss_pred             hhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999998 2   234444444333333333444443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.31  E-value=2e-10  Score=100.21  Aligned_cols=142  Identities=11%  Similarity=0.010  Sum_probs=113.4

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEA  169 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~  169 (276)
                      |.+.+++|++..+.+++...+.++..++.++.+++.||.+++..+....+......++....++.+.+.+..++.|++.+
T Consensus       241 p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~  320 (394)
T PRK10213        241 PVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFA  320 (394)
T ss_pred             HHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            56677889999999999999999999999999999999654433443333344444555566677888888999999999


Q ss_pred             hhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHH
Q 023846          170 SFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPF  232 (276)
Q Consensus       170 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~  232 (276)
                      ...+...+++.+..| +++++..++.....++|..+|+.++|++. ..|++..++..+.+.++.
T Consensus       321 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~  383 (394)
T PRK10213        321 LVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT  383 (394)
T ss_pred             hhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence            999988989998887 55677888888888999999999999998 788988888876654433

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.30  E-value=1.3e-10  Score=101.07  Aligned_cols=151  Identities=17%  Similarity=0.229  Sum_probs=119.6

Q ss_pred             ccccccC-CCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhh-hhHHHHH----HHHHHH
Q 023846           91 GIQGDFD-LNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFS-FSFWMIA----ICRMLV  164 (276)
Q Consensus        91 ~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~r~l~  164 (276)
                      .+-++.| .+....+.+.++..++-++.-...+++..|+|.|+++.++.+..++-..+.+.. ++.+...    +...++
T Consensus       232 ~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lh  311 (400)
T PF03825_consen  232 IYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLH  311 (400)
T ss_pred             HHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhh
Confidence            3345555 677777888888888888899999999999999999999999999999988887 5544433    335679


Q ss_pred             HhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHH-hhhhhhHHHHHHHhhc-ccc------hhHHHHHhHHHHHHHHHHH
Q 023846          165 GVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMC-LPSGYAIGYVYGGWVG-HYN------WRYAFWGEAILMFPFAVLG  236 (276)
Q Consensus       165 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~~g~~~~~~l~-~~~------w~~~~~~~~~~~~~~~~~~  236 (276)
                      |+..+.....+..++.+.+|++.|+++.+++... ..+|..+|..++|++. +.|      |...+.+.+.+.++..++.
T Consensus       312 G~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f  391 (400)
T PF03825_consen  312 GLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLF  391 (400)
T ss_pred             hHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988764 6899999999999998 544      4455566666555555555


Q ss_pred             Hhhcc
Q 023846          237 FVMKP  241 (276)
Q Consensus       237 ~~~~~  241 (276)
                      .++.+
T Consensus       392 ~~~fk  396 (400)
T PF03825_consen  392 VILFK  396 (400)
T ss_pred             Hhhcc
Confidence            44433

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.30  E-value=3.5e-11  Score=107.45  Aligned_cols=151  Identities=20%  Similarity=0.212  Sum_probs=135.8

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccC--ChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVN--PFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVG  167 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  167 (276)
                      |.+.+..+.+..+.+.+.++..+...++.++.|+++|+..  ++.+..+++++.+++.+.+.++++++.++..-++.|+.
T Consensus       322 ~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~  401 (509)
T KOG2504|consen  322 PSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFC  401 (509)
T ss_pred             HHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            6777899999999999999999999999999999999987  55666778888888888999999999999999999999


Q ss_pred             hhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc--ccchhHHHHHhHHHHHHHHHHHHhhc
Q 023846          168 EASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG--HYNWRYAFWGEAILMFPFAVLGFVMK  240 (276)
Q Consensus       168 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~--~~~w~~~~~~~~~~~~~~~~~~~~~~  240 (276)
                      .|........++.|+.+.++...+.|+...+..++.++||++++++.  ..+|...|+..++..++..++.++..
T Consensus       402 ~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  402 VGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            99999998889999999999999999999999999999999999887  44599999999998877776665543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.30  E-value=2.4e-10  Score=99.99  Aligned_cols=144  Identities=13%  Similarity=0.215  Sum_probs=104.7

Q ss_pred             cccccccCCCchhHHHHHHHHH-HHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHH---hhh-hhHHHHHHHH---
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFM-VGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGC---GFS-FSFWMIAICR---  161 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~r---  161 (276)
                      +.+.+++|+++.+.+++.+... ++..++.++.|++.||+|+|+.+.++..+.++..+..   ++. ++.+.+.+..   
T Consensus       234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  313 (402)
T PRK11902        234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIE  313 (402)
T ss_pred             HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            3566778999999999886654 5688999999999999999998887776665554322   343 3555555554   


Q ss_pred             -HHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHH
Q 023846          162 -MLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGF  237 (276)
Q Consensus       162 -~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~  237 (276)
                       ++.|++.+...+....++.+.+|.+.+    ++.+....+|..+++.++|.+. ..||+..|.+.++++++..++.+
T Consensus       314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~  387 (402)
T PRK11902        314 NLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW  387 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence             455666677777778888888886655    4445555667776666888888 89999999998887766655543

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.30  E-value=3.1e-10  Score=99.00  Aligned_cols=148  Identities=11%  Similarity=0.032  Sum_probs=116.5

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhh
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEAS  170 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~  170 (276)
                      ++++.+|.++.+.|++.+.+.++..++++..+++.||+++|+++..+.. .++..++..+.++++...+..++.|++.+.
T Consensus       231 ~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~  309 (393)
T PRK11195        231 WAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGF  309 (393)
T ss_pred             HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Confidence            5567789999999999999999999999999999999999988887754 344444556667777777888899999888


Q ss_pred             hhhcHHHHHhhcCcchh-hhHHHHHHHHHhhhhhhHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhh
Q 023846          171 FISLAAPFIDDNAPVAK-KTAWLGVFYMCLPSGYAIGYVYGGWVGHYNWRYAFWGEAILMFPFAVLGFVM  239 (276)
Q Consensus       171 ~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~  239 (276)
                      ..+...+.+.+..|++. +|++.++.+...++|..++..+.+.+...|-+..+.+.+...++.+.+.+.+
T Consensus       310 ~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (393)
T PRK11195        310 FVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLLVALAMALLW  379 (393)
T ss_pred             hhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888766654 7999999999999999999999887766666665555444444444444443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.29  E-value=1.5e-10  Score=93.50  Aligned_cols=150  Identities=13%  Similarity=0.108  Sum_probs=114.8

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHH
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFS-------FSFWMIAICRM  162 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~r~  162 (276)
                      |.+++.+|++.+|...+.+.-.+|..+ +++.|.+.|++|++.++.+|.+...+++.+..++       .++|.+.+..+
T Consensus        26 ~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~  104 (250)
T PF06813_consen   26 PQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLF  104 (250)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHH
Confidence            689999999999999999999999876 5889999999999999999999999999876654       36788888888


Q ss_pred             HHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhcc
Q 023846          163 LVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKP  241 (276)
Q Consensus       163 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~  241 (276)
                      +.|.+.+.....+.....+.+| ++||++.|+.-....+++.+-..+...+. ...-...+.......++.++..++.++
T Consensus       105 l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~  183 (250)
T PF06813_consen  105 LGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRP  183 (250)
T ss_pred             HHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheec
Confidence            8888877777777777889998 68999999999999998877554444443 322333333333333344444444443

>TIGR00896 CynX cyanate transporter

Probab=99.28  E-value=1.3e-10  Score=99.90  Aligned_cols=124  Identities=17%  Similarity=0.160  Sum_probs=100.6

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhcc-CChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSV-NPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGE  168 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  168 (276)
                      |.+.++.|.+..+.+.+.+.+.++.++++++.|++.||+ +||+.+.++..+.+++.+++.+.++...+. ..++.|++.
T Consensus       221 p~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~  299 (355)
T TIGR00896       221 PAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQ  299 (355)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhh
Confidence            455567899999999999999999999999999999999 567777788888877777666655433322 457889999


Q ss_pred             hhhhhcHHHHHhhcCc-chhhhHHHHHHHHHhhhhhhHHHHHHHhhc
Q 023846          169 ASFISLAAPFIDDNAP-VAKKTAWLGVFYMCLPSGYAIGYVYGGWVG  214 (276)
Q Consensus       169 ~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  214 (276)
                      +...+...+.+.+..+ +++++...++.+....+|..++|.+.|++.
T Consensus       300 g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~  346 (355)
T TIGR00896       300 GGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLH  346 (355)
T ss_pred             hhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988887777765554 567799999999999999999999999987

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.28  E-value=1.8e-10  Score=100.80  Aligned_cols=144  Identities=15%  Similarity=0.089  Sum_probs=111.7

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhh-ccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLAR-SVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGE  168 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d-~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  168 (276)
                      |.+.++.+.++.+.+++.+...++...+..+.+++.| |++.++.+..+..+.+++.++.+++++++.+.+..++.|++.
T Consensus       232 p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~  311 (400)
T PRK11646        232 PIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGS  311 (400)
T ss_pred             hhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            4544554446778899888888777666666666665 567677778888888888888888888888888888899998


Q ss_pred             hhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-cc---ch-hHHHHHhHHHHHHHH
Q 023846          169 ASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HY---NW-RYAFWGEAILMFPFA  233 (276)
Q Consensus       169 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~---~w-~~~~~~~~~~~~~~~  233 (276)
                      +...+...+++.+..|+++||+++|+.+....+|..+||.++|++. ..   +. ...++..++..++..
T Consensus       312 ~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~  381 (400)
T PRK11646        312 IIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITL  381 (400)
T ss_pred             HHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHH
Confidence            8888899999999999999999999999999999999999999998 32   32 455555444444443

>PRK09848 glucuronide transporter; Provisional

Probab=99.26  E-value=3.2e-10  Score=100.62  Aligned_cols=124  Identities=10%  Similarity=0.103  Sum_probs=100.6

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHhhh
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSF--SFWMIAICRMLVGVGE  168 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~  168 (276)
                      +++..+|.+....++......++.+++.++++++.||+|+|+++.++.++.+++.++..+.+  +++.+++..++.|+|.
T Consensus       254 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~  333 (448)
T PRK09848        254 YVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQ  333 (448)
T ss_pred             eEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHH
Confidence            44556776655445545555677888999999999999999999999998888877766643  5677777788999999


Q ss_pred             hhhhhcHHHHHhhcCcch-------hhhHHHHHHHHHhhhhhhHHHHHHHhhc
Q 023846          169 ASFISLAAPFIDDNAPVA-------KKTAWLGVFYMCLPSGYAIGYVYGGWVG  214 (276)
Q Consensus       169 ~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~g~~~~~~l~  214 (276)
                      +...+...++.+|..|.+       ++|...++.+....+|..+|+.+.+.+.
T Consensus       334 ~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l  386 (448)
T PRK09848        334 GVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL  386 (448)
T ss_pred             HHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988754       3589999999999999999998887764

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.26  E-value=1.1e-10  Score=102.60  Aligned_cols=139  Identities=11%  Similarity=0.070  Sum_probs=95.9

Q ss_pred             ccccccc--CCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhh-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 023846           90 TGIQGDF--DLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRL-IGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGV  166 (276)
Q Consensus        90 ~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~  166 (276)
                      |.+.+++  +.+..+.+.+.+...++..++.++.|+++||+++|+. ......+..++..+....++.....++-.+.++
T Consensus       266 p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (412)
T TIGR02332       266 PQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASM  345 (412)
T ss_pred             HHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            4444543  6677888999999999999999999999999997774 444444444443332222232222222223333


Q ss_pred             hhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-cc-chhHHHHHhHHH
Q 023846          167 GEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HY-NWRYAFWGEAIL  228 (276)
Q Consensus       167 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~-~w~~~~~~~~~~  228 (276)
                      +.....+.......|.+|+++|++++|+.+....+|.+++|.+.+.+. .. +|++.|++.++.
T Consensus       346 g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       346 GSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             HhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            333333334445567899999999999999999999999999998888 44 599988877654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.25  E-value=2.5e-10  Score=99.46  Aligned_cols=134  Identities=13%  Similarity=0.008  Sum_probs=91.5

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhh
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEAS  170 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~  170 (276)
                      .+.+++|.+..+.+.+.+.+.++..++.++.+++.||+|||+.+.++..+..++.++..+.++.+..++.-.+.+.|.+.
T Consensus       229 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~  308 (392)
T PRK10473        229 LLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSV  308 (392)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567899999999999999999999999999999999999999999998888888777776655555555555554444


Q ss_pred             hhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHH
Q 023846          171 FISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILM  229 (276)
Q Consensus       171 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~  229 (276)
                      ..+..  ...+..|.++|+   +.......++..+++.+++++. ..|+.......+++.
T Consensus       309 ~~~~~--~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~~~  363 (392)
T PRK10473        309 GFGVA--MSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGILI  363 (392)
T ss_pred             HhHHH--HHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            43332  334455544443   3333344556666666666666 556655444444433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.25  E-value=2.7e-10  Score=101.97  Aligned_cols=124  Identities=18%  Similarity=0.237  Sum_probs=108.8

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHh
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGF----SFSFWMIAICRMLVGV  166 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~r~l~G~  166 (276)
                      ++++.+|.++.+.+++.....++..++.++.|++.||+|||+.+.++..+.+++..+..+    ..+++.+....++.|+
T Consensus       281 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  360 (485)
T TIGR00711       281 YLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGF  360 (485)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHH
Confidence            455668999999999999999999999999999999999999999999888888876652    2356677777899999


Q ss_pred             hhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc
Q 023846          167 GEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG  214 (276)
Q Consensus       167 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  214 (276)
                      +.+...+.....+.+..|+++|+++.++.+....+|..+|+.+.+.+.
T Consensus       361 g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~  408 (485)
T TIGR00711       361 GMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTIL  408 (485)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999888777788888899999999999999999999999999988876

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.25  E-value=2.7e-10  Score=97.36  Aligned_cols=183  Identities=13%  Similarity=0.083  Sum_probs=132.3

Q ss_pred             CCCChhhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHHhHHH
Q 023846           43 SWFTPGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFA  122 (276)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g  122 (276)
                      -++++|.+++.+++..+...+.-..++.                 +.-+...-|| +....-|+..+|.+.++...+++-
T Consensus        39 Vy~rRW~vLl~~slL~~SN~~qWI~ya~-----------------i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~m  100 (480)
T KOG2563|consen   39 VYPRRWVVLLAFSLLNFSNGMQWIQYAP-----------------INNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAM  100 (480)
T ss_pred             cchhHhHHHHHHHHHHhcCcchheeehh-----------------HHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHH
Confidence            4455555555555555554433222221                 1135556677 777889999999999999999999


Q ss_pred             HhhhccCChhhHHHHHHHHHHHHHHHhhhh------hHH--HHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHH
Q 023846          123 SLARSVNPFRLIGVGLTVWTLAVVGCGFSF------SFW--MIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGV  194 (276)
Q Consensus       123 ~l~d~~grr~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~  194 (276)
                      |+.||+|-|..+.++....+++..+-..+.      .++  ..+.+..+.+.++-.....-.-+..-|+++++|..+..+
T Consensus       101 w~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~  180 (480)
T KOG2563|consen  101 WILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVL  180 (480)
T ss_pred             HhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhH
Confidence            999999999999999999999998766553      344  667888888888777766666777889999999999999


Q ss_pred             HHHHhhhhhhHHHHHHHhhc-cc------chhH--HHHHhHHHHHHHHHHHHhhcccc
Q 023846          195 FYMCLPSGYAIGYVYGGWVG-HY------NWRY--AFWGEAILMFPFAVLGFVMKPLQ  243 (276)
Q Consensus       195 ~~~~~~~g~~~g~~~~~~l~-~~------~w~~--~~~~~~~~~~~~~~~~~~~~~~~  243 (276)
                      -.++..+|.++|.++...+. +.      .|..  .|+..+.++.+.+++..+..+++
T Consensus       181 ~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~  238 (480)
T KOG2563|consen  181 GVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKK  238 (480)
T ss_pred             HHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            99999999999988887776 32      3543  35545555444444444444443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.25  E-value=1.1e-10  Score=98.92  Aligned_cols=148  Identities=16%  Similarity=0.006  Sum_probs=115.2

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhh-------hHHHHHHHHHH
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSF-------SFWMIAICRML  163 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~r~l  163 (276)
                      +++++|+.++.+.|.+...+.+...+..+.+|+++||+|.+|++.+....++++..+.++..       +...+++..+.
T Consensus       244 ~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~  323 (417)
T COG2223         244 YLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLA  323 (417)
T ss_pred             HHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999998888888877766653       34444443333


Q ss_pred             HHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-cc-chhHHHHHhHHHHHHHHHHHHhh
Q 023846          164 VGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HY-NWRYAFWGEAILMFPFAVLGFVM  239 (276)
Q Consensus       164 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~-~w~~~~~~~~~~~~~~~~~~~~~  239 (276)
                      .++..|.....+..++...+| ++-|.+.|+....+.+|+..-|..-+... .. .+...|++...+.+++.+..+..
T Consensus       324 l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~  400 (417)
T COG2223         324 LFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL  400 (417)
T ss_pred             HHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333444555666666 58899999999999999998888777776 44 49999999988887777766654

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.24  E-value=1.2e-09  Score=94.69  Aligned_cols=132  Identities=16%  Similarity=0.216  Sum_probs=101.3

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHH
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFS-----FSFWMIAICRMLVG  165 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G  165 (276)
                      .+.+++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+..++.+++.+.     ++...+++..++.|
T Consensus       232 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  311 (385)
T TIGR00710       232 VYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVG  311 (385)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence            4456789999999999999999999999999999999999999988887777776655543     23445566678899


Q ss_pred             hhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhh-hhhHHHHHHHhhc-ccchhHHHHH
Q 023846          166 VGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPS-GYAIGYVYGGWVG-HYNWRYAFWG  224 (276)
Q Consensus       166 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~-~~~w~~~~~~  224 (276)
                      ++.+...+.......|..| ++|+++.++.+..... |.+.++.++ .+. ..+|...+..
T Consensus       312 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~-~~~~~~~~~~~~~~  370 (385)
T TIGR00710       312 IGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS-LIHGNTAWPMSLSC  370 (385)
T ss_pred             HHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH-hccccChHHHHHHH
Confidence            9999998988888888887 6899999998877665 444455544 444 4444443333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.23  E-value=1.9e-10  Score=102.56  Aligned_cols=148  Identities=16%  Similarity=0.055  Sum_probs=101.1

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhH--------HHHHHHH--HHHHHHHhh-hhhHHHHHH
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLI--------GVGLTVW--TLAVVGCGF-SFSFWMIAI  159 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~--------~~~~~~~--~~~~~~~~~-~~~~~~~~~  159 (276)
                      ++.+.+|.+..+.+++.++..++..++.++.|+++||+++|+..        ..+..+.  ++..+.... ..+....++
T Consensus       287 ~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (465)
T TIGR00894       287 FISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTII  366 (465)
T ss_pred             HHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence            55677899999999999999999999999999999997654321        1111111  111111111 234444444


Q ss_pred             HHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-c---cchhHHHHHhHHHHHHHHHH
Q 023846          160 CRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-H---YNWRYAFWGEAILMFPFAVL  235 (276)
Q Consensus       160 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~---~~w~~~~~~~~~~~~~~~~~  235 (276)
                      +-.+.+.+.+...+.......|..| +.+|.+.++.+....+|..++|.+.+.+. .   .+|+..|++.++..++..++
T Consensus       367 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~  445 (465)
T TIGR00894       367 ILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIF  445 (465)
T ss_pred             HHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555554455567766 58999999999999999999999999876 3   34889999888777666555


Q ss_pred             HHhh
Q 023846          236 GFVM  239 (276)
Q Consensus       236 ~~~~  239 (276)
                      ..+.
T Consensus       446 ~~~~  449 (465)
T TIGR00894       446 YLIF  449 (465)
T ss_pred             eeee
Confidence            4443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.23  E-value=1.1e-12  Score=117.94  Aligned_cols=152  Identities=25%  Similarity=0.451  Sum_probs=3.0

Q ss_pred             CccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhh---------------
Q 023846           88 PGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSF---------------  152 (276)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~---------------  152 (276)
                      +++.++++|+++.++.|++.+.+-++..+..++..++.+|.+|-+.+-+|.++++++.+++++-+               
T Consensus        25 ~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~  104 (539)
T PF03137_consen   25 SLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSN  104 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccc
Confidence            44699999999999999999999999999999999999999999999999999999998876511               


Q ss_pred             -----------------------------------hHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHH
Q 023846          153 -----------------------------------SFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYM  197 (276)
Q Consensus       153 -----------------------------------~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~  197 (276)
                                                         -+..+++++++.|+|....++...+|+-|..++++-+..+|+...
T Consensus       105 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~  184 (539)
T PF03137_consen  105 GNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYA  184 (539)
T ss_dssp             -----------------------------------------------SSS------------------------------
T ss_pred             cccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhH
Confidence                                               145778899999999999999999999999999999999999999


Q ss_pred             HhhhhhhHHHHHHHhhc-c----------------------cchhHHHHHhHHHHHHHHHHHHhh
Q 023846          198 CLPSGYAIGYVYGGWVG-H----------------------YNWRYAFWGEAILMFPFAVLGFVM  239 (276)
Q Consensus       198 ~~~~g~~~g~~~~~~l~-~----------------------~~w~~~~~~~~~~~~~~~~~~~~~  239 (276)
                      ...+|.++|.++++.+. .                      ..|...|++.+++.++..+.++++
T Consensus       185 ~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~F  249 (539)
T PF03137_consen  185 MSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFF  249 (539)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             HhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999988764 1                      125556666666665555554444

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.22  E-value=1.8e-10  Score=103.50  Aligned_cols=124  Identities=20%  Similarity=0.182  Sum_probs=109.5

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHhh
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFS---FSFWMIAICRMLVGVG  167 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~  167 (276)
                      +++..+|.++.+.|+....+.++..+++++.|++.||+|+|+.+..+.++.+++.++..+.   ++.+...+..++.|+|
T Consensus       285 ~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g  364 (495)
T PRK14995        285 ELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFS  364 (495)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Confidence            5677789999999999999999999999999999999999999998988888777655432   3566667788999999


Q ss_pred             hhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc
Q 023846          168 EASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG  214 (276)
Q Consensus       168 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  214 (276)
                      .|...+.....+.+..|+++++.+.+++++...+|..+|+.+.+.+.
T Consensus       365 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~  411 (495)
T PRK14995        365 AASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLL  411 (495)
T ss_pred             HHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999888889999999999999999999999999999999888875

>PRK09669 putative symporter YagG; Provisional

Probab=99.21  E-value=3e-10  Score=100.70  Aligned_cols=153  Identities=11%  Similarity=-0.014  Sum_probs=113.5

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhc----cCCh-hhHHHHHHHHHHHHHHHhhhh------hHHHHH
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARS----VNPF-RLIGVGLTVWTLAVVGCGFSF------SFWMIA  158 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~grr-~~~~~~~~~~~~~~~~~~~~~------~~~~~~  158 (276)
                      .++.+++|++..++|.+..+..+..++..|+.|+++||    +||| +.++++....++...+....+      .+..++
T Consensus        34 ~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~  113 (444)
T PRK09669         34 YFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYAC  113 (444)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHH
Confidence            47778899999999999999999999999999999998    7774 555567666666665444333      245666


Q ss_pred             HHHHHHHhhhhhhhhcHHHHHhhcC-cchhhhHHHHHHHHHhhhhhhHHHHHHHhhc--------ccchhHHHHHhHHHH
Q 023846          159 ICRMLVGVGEASFISLAAPFIDDNA-PVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG--------HYNWRYAFWGEAILM  229 (276)
Q Consensus       159 ~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~--------~~~w~~~~~~~~~~~  229 (276)
                      +..++.+.+.........++.+|+. ++++|++..+....+..+|..+++.+...+.        ..+|+..+.+.+++.
T Consensus       114 ~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~  193 (444)
T PRK09669        114 VTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLG  193 (444)
T ss_pred             HHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHH
Confidence            6667777777777767778889987 5688999888888888888777765443322        247888888888877


Q ss_pred             HHHHHHHHhhccc
Q 023846          230 FPFAVLGFVMKPL  242 (276)
Q Consensus       230 ~~~~~~~~~~~~~  242 (276)
                      +++.+..++..+|
T Consensus       194 ~v~~~~~~~~~~e  206 (444)
T PRK09669        194 VVLFFCCFFMTKE  206 (444)
T ss_pred             HHHHHHHhCCeEE
Confidence            6666655555444

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.19  E-value=1e-10  Score=97.39  Aligned_cols=130  Identities=7%  Similarity=-0.017  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhh
Q 023846          109 AFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKK  188 (276)
Q Consensus       109 ~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r  188 (276)
                      +..+.-+.|.++.+++.||+|||+.+..++++++++.++...+.+-....+.-+..-++..+.+.+.+.|..|.+|.+-|
T Consensus       389 itslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavR  468 (528)
T KOG0253|consen  389 ITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVR  468 (528)
T ss_pred             HHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhh
Confidence            33456778999999999999999999999999999988777766433333333333444556667788899999999999


Q ss_pred             hHHHHHHHHHhhhhhhHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhh
Q 023846          189 TAWLGVFYMCLPSGYAIGYVYGGWVGHYNWRYAFWGEAILMFPFAVLGFVM  239 (276)
Q Consensus       189 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~  239 (276)
                      +...|.......+|+++.|.++ ...+..-..+..+.+...++..+...++
T Consensus       469 atgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ilagIavcff  518 (528)
T KOG0253|consen  469 ATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFILAGIAVCFF  518 (528)
T ss_pred             hcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHHHHHHheee
Confidence            9999999999999999999998 2223333445555555555555555554

>PRK10133 L-fucose transporter; Provisional

Probab=99.18  E-value=1.5e-09  Score=96.12  Aligned_cols=133  Identities=11%  Similarity=-0.094  Sum_probs=108.1

Q ss_pred             ccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhh
Q 023846           93 QGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFI  172 (276)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~  172 (276)
                      ++.+|.++.+.++....+.++..++.++.|++.||+|+|+++.++.++.++..++..+.++.. .+..-.+.|++.+..+
T Consensus       287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~  365 (438)
T PRK10133        287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQY  365 (438)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHH
Confidence            567899999999999999999999999999999999999999998888777766666655532 3456778999999999


Q ss_pred             hcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccc-hhHHHHHhHHH
Q 023846          173 SLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYN-WRYAFWGEAIL  228 (276)
Q Consensus       173 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~-w~~~~~~~~~~  228 (276)
                      |...+...+..|+ +.+.+.++..+ ..+|..++|.+.|.+. ..| -+..|++..+.
T Consensus       366 P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~  421 (438)
T PRK10133        366 PTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALC  421 (438)
T ss_pred             HHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            9999999999874 46677777764 4467888888888887 666 77777765443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.16  E-value=1.2e-09  Score=94.49  Aligned_cols=143  Identities=9%  Similarity=-0.047  Sum_probs=98.9

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCC---hhhHHH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNP---FRLIGV-GLTVWTLAVVGCGFSFSFWMIAICRMLVG  165 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~gr---r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~l~G  165 (276)
                      |.+.++.|.+.. .+...++..+...++   .++++||.+|   |+.... ..++.++......+..+....++.-.+.|
T Consensus       216 p~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~  291 (368)
T TIGR00903       216 EAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAG  291 (368)
T ss_pred             HHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence            455566777754 555555555555554   4677777654   333332 34444444444455555555555666777


Q ss_pred             hhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHH
Q 023846          166 VGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGHYNWRYAFWGEAILMFPFAVLGF  237 (276)
Q Consensus       166 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~w~~~~~~~~~~~~~~~~~~~  237 (276)
                      ++....++...++.+|.+|++.|+++.|+.+...++|++++|++.+.+.. +-+..|.+.++..++..+..+
T Consensus       292 ~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       292 LLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             HhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH
Confidence            77777778788899999999999999999999999999999988876653 677788888877777666654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.15  E-value=7.9e-10  Score=95.03  Aligned_cols=110  Identities=10%  Similarity=-0.001  Sum_probs=92.8

Q ss_pred             ccccccCCCchhHHHHHHHHH-HHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhh-----------hhHHHHH
Q 023846           91 GIQGDFDLNNFQDGVLSSAFM-VGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFS-----------FSFWMIA  158 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~  158 (276)
                      .+.+++|++..+.+.+.+++. ++..++.+++|++.||+|||+.+.++.++.++...+..+.           ++.+.+.
T Consensus       234 ~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (356)
T TIGR00901       234 LFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLF  313 (356)
T ss_pred             HHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHH
Confidence            444558999999998887766 5778999999999999999999998888887766655443           3457778


Q ss_pred             HHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhh
Q 023846          159 ICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLP  200 (276)
Q Consensus       159 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~  200 (276)
                      .+.++.+++.+...+...+++.|.+|+++||+.+|+.+...+
T Consensus       314 ~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       314 LTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            888999999999999999999999999999999999887654

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.14  E-value=4.3e-10  Score=95.99  Aligned_cols=116  Identities=20%  Similarity=0.220  Sum_probs=102.2

Q ss_pred             cccccCCC-chhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHhh
Q 023846           92 IQGDFDLN-NFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSF---SFWMIAICRMLVGVG  167 (276)
Q Consensus        92 ~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~r~l~G~~  167 (276)
                      +.+++|.+ ..+.+++.+...++..++.++.|++.||+++|+...+......+..+...+..   +....++..++.|++
T Consensus       233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  312 (352)
T PF07690_consen  233 LQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFG  312 (352)
T ss_dssp             CCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHH
T ss_pred             hhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            48889999 78999999999999999999999999999998888877777776666555443   457777788899999


Q ss_pred             hhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHH
Q 023846          168 EASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGY  207 (276)
Q Consensus       168 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  207 (276)
                      .+...+....++.+.+|+++||++.|+.+...++|..+||
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  313 FGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            9999999999999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.14  E-value=5.2e-09  Score=93.60  Aligned_cols=124  Identities=18%  Similarity=0.054  Sum_probs=96.8

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHH
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGF-----SFSFWMIAICRMLVG  165 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~r~l~G  165 (276)
                      ++.+...-+....+++.+...++.+++.++++++.||+|+|+.+.++.++.+++.+...+     .++.+.+++.-++.|
T Consensus       256 y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g  335 (473)
T PRK10429        256 YYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLN  335 (473)
T ss_pred             eEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence            444433335556777777777889999999999999999999999888776665554332     345677777888899


Q ss_pred             hhhhhhhhcHHHHHhhcCc-------chhhhHHHHHHHHHhhhhhhHHHHHHHhhc
Q 023846          166 VGEASFISLAAPFIDDNAP-------VAKKTAWLGVFYMCLPSGYAIGYVYGGWVG  214 (276)
Q Consensus       166 ~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  214 (276)
                      ++.+...+...++++|..|       .++.|..++......-+|..+++.+.|++.
T Consensus       336 ~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l  391 (473)
T PRK10429        336 IGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL  391 (473)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999966       233466889999999999999998888765

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.13  E-value=2.8e-09  Score=95.29  Aligned_cols=139  Identities=17%  Similarity=0.220  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHh----hhc-cCChhhH--HHHHHHHHHHHHHHhh---------hhhHHHHHHHHHHHHh
Q 023846          103 DGVLSSAFMVGLLVASPIFASL----ARS-VNPFRLI--GVGLTVWTLAVVGCGF---------SFSFWMIAICRMLVGV  166 (276)
Q Consensus       103 ~~~~~~~~~~~~~i~~~~~g~l----~d~-~grr~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~~r~l~G~  166 (276)
                      .+++.+++.+..++.+++..++    .+| .+++...  .+|.++.+++.+..++         ..+++++++..++.|+
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            6788999999998888886654    443 3333433  7788888888877764         4589999999999999


Q ss_pred             hhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhcc
Q 023846          167 GEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKP  241 (276)
Q Consensus       167 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~  241 (276)
                      |.....|...+++.+..|++.||+++|++.....+|..+++.+..... ..+|.+.|...++..++..++.+++.|
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998888776 668998888888887777776666544

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00788 fbt folate/biopterin transporter

Probab=99.12  E-value=1.8e-09  Score=96.37  Aligned_cols=125  Identities=10%  Similarity=-0.016  Sum_probs=108.5

Q ss_pred             ccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhh----------hhHHHHHHHHH
Q 023846           93 QGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFS----------FSFWMIAICRM  162 (276)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~r~  162 (276)
                      .+.+|.++.+.|.+.....++.+++....+++.+|++.|+++.++.++.+++.+.....          ++.+.+....+
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~  359 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSI  359 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhH
Confidence            35789999999999999999999999999999999999999999999998877554211          33344556678


Q ss_pred             HHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccc
Q 023846          163 LVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYN  217 (276)
Q Consensus       163 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~  217 (276)
                      +.+++.+........++.+.+|++.+|+..++.+...++|..+++.+++.+. ..|
T Consensus       360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            8999999999999999999999999999999999999999999999999887 444

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.11  E-value=9.8e-09  Score=85.71  Aligned_cols=149  Identities=21%  Similarity=0.174  Sum_probs=124.7

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhc-cCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARS-VNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGE  168 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  168 (276)
                      |.+..|.|+|..+.|++.+...+.....++....+.+| -.+|+..+....++.++.+.+.+.+....+.- .++.|+|.
T Consensus       232 P~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~  310 (395)
T COG2807         232 PAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQ  310 (395)
T ss_pred             HHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCcc
Confidence            78889999999999999999999999999999999996 46788888888899999988888774333322 59999999


Q ss_pred             hhhhhcHHHHHhhcCc-chhhhHHHHHHHHHhhhhhhHHHHHHHhhc--ccchhHHHHHhHHHHHHHHHHHHhh
Q 023846          169 ASFISLAAPFIDDNAP-VAKKTAWLGVFYMCLPSGYAIGYVYGGWVG--HYNWRYAFWGEAILMFPFAVLGFVM  239 (276)
Q Consensus       169 ~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~--~~~w~~~~~~~~~~~~~~~~~~~~~  239 (276)
                      |..++.+..++.+..+ +++-+...++.|..+.+=..+||.+.|++-  ..+|+..++......+...+..+..
T Consensus       311 G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a  384 (395)
T COG2807         311 GGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRA  384 (395)
T ss_pred             chHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999988775 456677777888888888888999999998  7789999988888776666665554

>PRK11043 putative transporter; Provisional

Probab=99.10  E-value=1.2e-08  Score=89.17  Aligned_cols=124  Identities=8%  Similarity=-0.033  Sum_probs=96.8

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHH---hh--hhhHHHHHHHHHHH
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGC---GF--SFSFWMIAICRMLV  164 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~r~l~  164 (276)
                      |.+.+++|.+..+.++....+.++..++.++.+++.||+|+|+.+.......+++.+..   .+  .++.+.+++...+.
T Consensus       227 p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (401)
T PRK11043        227 PFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVM  306 (401)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence            45566789999999998888889999999999999999999987766555444433322   22  23555566667788


Q ss_pred             HhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc
Q 023846          165 GVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG  214 (276)
Q Consensus       165 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  214 (276)
                      |++.+..++.......+..| +++|++.++.+.....+..+++.+.+.+.
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~  355 (401)
T PRK11043        307 AAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALI  355 (401)
T ss_pred             HHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            88889988888888777776 68999999999988888888888877776

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.09  E-value=9.2e-09  Score=90.62  Aligned_cols=133  Identities=10%  Similarity=-0.159  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHH-hhh-----hhHHHHHHHHHHHHhhhhhhhhcHHHHHh
Q 023846          107 SSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGC-GFS-----FSFWMIAICRMLVGVGEASFISLAAPFID  180 (276)
Q Consensus       107 ~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~r~l~G~~~~~~~~~~~~~i~  180 (276)
                      ..+..+...+..+++|+++||+|+|+++.++....++..... ...     .+++.+.+..+...++.|........++.
T Consensus       292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip  371 (462)
T PRK15034        292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIA  371 (462)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhH
Confidence            444567788899999999999999999998888776665321 122     24666666555544555555555566666


Q ss_pred             hcCcc---------------------hhhhHHHHHHHHHhhhhhhHHHHHHHhhc--ccchhHHHHHhHHHHHHHHHHHH
Q 023846          181 DNAPV---------------------AKKTAWLGVFYMCLPSGYAIGYVYGGWVG--HYNWRYAFWGEAILMFPFAVLGF  237 (276)
Q Consensus       181 ~~~~~---------------------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~--~~~w~~~~~~~~~~~~~~~~~~~  237 (276)
                      +.+|.                     ++-|.+.|+......+|+.+-|.+-+...  ..++...|+...+..+++.++.+
T Consensus       372 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w  451 (462)
T PRK15034        372 VIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW  451 (462)
T ss_pred             HHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence            66663                     25788999999999999999997766555  56688889998888888877776


Q ss_pred             hh
Q 023846          238 VM  239 (276)
Q Consensus       238 ~~  239 (276)
                      ..
T Consensus       452 ~~  453 (462)
T PRK15034        452 LV  453 (462)
T ss_pred             HH
Confidence            65

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.08  E-value=1.4e-08  Score=87.80  Aligned_cols=121  Identities=15%  Similarity=0.072  Sum_probs=87.0

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHH---Hhhh-hhHHHHHHHHHHHHh
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVG---CGFS-FSFWMIAICRMLVGV  166 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~r~l~G~  166 (276)
                      .+.+++|.++.+.+++.+...++..++.++.|++.||+|+|+.+.++.++..+..+.   .... .+++.+.++..+.+.
T Consensus       220 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (377)
T PRK11102        220 VYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVG  299 (377)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            455678999999999999999999999999999999999999998887765443322   2222 244555555555555


Q ss_pred             hhhhhhhcHHHHHhhcCcchhhhHHHHHHHHH-hhhhhhHHHHHHHh
Q 023846          167 GEASFISLAAPFIDDNAPVAKKTAWLGVFYMC-LPSGYAIGYVYGGW  212 (276)
Q Consensus       167 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~~g~~~~~~  212 (276)
                      +.+........++.|..| ++++++.++.+.. ..+|..+++++++.
T Consensus       300 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~  345 (377)
T PRK11102        300 CVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA  345 (377)
T ss_pred             HHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            556666666677778776 8899999887654 34666666666543

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.08  E-value=7.4e-10  Score=100.70  Aligned_cols=153  Identities=24%  Similarity=0.420  Sum_probs=132.6

Q ss_pred             CccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhh---------------
Q 023846           88 PGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSF---------------  152 (276)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~---------------  152 (276)
                      .+..+++.|+++.++.|++.+.+-++..+...+..++.-|..|-+.+-+|+++++++.+++++-+               
T Consensus       119 ~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~  198 (735)
T KOG3626|consen  119 VITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQ  198 (735)
T ss_pred             hhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhc
Confidence            34699999999999999999999999999999999999999999999999999999999887620               


Q ss_pred             ----------------------------------h--H-HHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHH
Q 023846          153 ----------------------------------S--F-WMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVF  195 (276)
Q Consensus       153 ----------------------------------~--~-~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~  195 (276)
                                                        +  + ..++++.++.|+|....++...+|+-|...+++-+..+|+.
T Consensus       199 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~  278 (735)
T KOG3626|consen  199 SVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGIL  278 (735)
T ss_pred             cccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHH
Confidence                                              0  2 25677899999999999999999999999999999999999


Q ss_pred             HHHhhhhhhHHHHHHHhhc----cc----------------chhHHHHHhHHHHHHHHHHHHhhc
Q 023846          196 YMCLPSGYAIGYVYGGWVG----HY----------------NWRYAFWGEAILMFPFAVLGFVMK  240 (276)
Q Consensus       196 ~~~~~~g~~~g~~~~~~l~----~~----------------~w~~~~~~~~~~~~~~~~~~~~~~  240 (276)
                      .....+|.++|.++++++.    ..                .|...|++.+++.++..+.++++.
T Consensus       279 ~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fP  343 (735)
T KOG3626|consen  279 YSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFP  343 (735)
T ss_pred             HHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            9999999999999999875    11                266777777777766666666553

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.07  E-value=4.5e-09  Score=94.01  Aligned_cols=154  Identities=6%  Similarity=-0.072  Sum_probs=111.5

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhh----ccCC-hhhHHHHHHHHHHHHHHHhhhh------hHHHHH
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLAR----SVNP-FRLIGVGLTVWTLAVVGCGFSF------SFWMIA  158 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~gr-r~~~~~~~~~~~~~~~~~~~~~------~~~~~~  158 (276)
                      .++.+.+|++...+|.+..+.-+.-++..|+.|+++|    |+|| |+.++++....+++..++...+      .+..++
T Consensus        31 ~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~  110 (473)
T PRK10429         31 YYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVC  110 (473)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence            3667788999999999999999999999999999999    5698 5566677777777765554322      234555


Q ss_pred             HHHHHHHhhhhhhhhcHHHHHhhcC-cchhhhHHHHHHHHHhhhhhhHHHHHHHhh----c----ccchhHHHHHhHHHH
Q 023846          159 ICRMLVGVGEASFISLAAPFIDDNA-PVAKKTAWLGVFYMCLPSGYAIGYVYGGWV----G----HYNWRYAFWGEAILM  229 (276)
Q Consensus       159 ~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----~----~~~w~~~~~~~~~~~  229 (276)
                      +..++.+++.........+++.|+. ++++|.+..+.-..+.++|..+.+.+...+    .    ..+|+....+.+++.
T Consensus       111 ~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~  190 (473)
T PRK10429        111 VTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFF  190 (473)
T ss_pred             HHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHH
Confidence            6667778888888888888999998 689999999887777777765554443322    1    235777777777766


Q ss_pred             HHHHHHHHhhcccc
Q 023846          230 FPFAVLGFVMKPLQ  243 (276)
Q Consensus       230 ~~~~~~~~~~~~~~  243 (276)
                      ++..+..++..+|.
T Consensus       191 ~~~~~~~~~~~~e~  204 (473)
T PRK10429        191 IVSTIITLRNVHEV  204 (473)
T ss_pred             HHHHHHHHcCceec
Confidence            65555555544543

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.07  E-value=4.5e-09  Score=92.76  Aligned_cols=121  Identities=17%  Similarity=0.244  Sum_probs=106.1

Q ss_pred             ccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHhhhhh
Q 023846           93 QGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSF--SFWMIAICRMLVGVGEAS  170 (276)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~~~  170 (276)
                      +...|.+ ...+.+..+..++..++.+++++++||+|+|+.+..+.++.+++.++..+.+  +.+.+++..++.|++.+.
T Consensus       253 ~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~  331 (428)
T PF13347_consen  253 TYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGA  331 (428)
T ss_pred             HHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcc
Confidence            3334544 5678888899999999999999999999999999999999999999888886  999999999999999999


Q ss_pred             hhhcHHHHHhhcCcc-------hhhhHHHHHHHHHhhhhhhHHHHHHHhhc
Q 023846          171 FISLAAPFIDDNAPV-------AKKTAWLGVFYMCLPSGYAIGYVYGGWVG  214 (276)
Q Consensus       171 ~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  214 (276)
                      .++...++++|..+.       ++.|...++......+|..+++.+.+.+.
T Consensus       332 ~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l  382 (428)
T PF13347_consen  332 FFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLL  382 (428)
T ss_pred             cccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            999999999999873       33588999999999999999988877664

>PRK09669 putative symporter YagG; Provisional

Probab=99.07  E-value=1.3e-08  Score=90.25  Aligned_cols=115  Identities=14%  Similarity=0.134  Sum_probs=90.5

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHhhhhhhhhcHHH
Q 023846          100 NFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGF--SFSFWMIAICRMLVGVGEASFISLAAP  177 (276)
Q Consensus       100 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~r~l~G~~~~~~~~~~~~  177 (276)
                      +...+.+.....+..+++.++++++.||+|+|+.+.++.++.++..+...+  .++.+.+++..++.|++.+...+...+
T Consensus       263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~a  342 (444)
T PRK09669        263 PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWS  342 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455666677788889999999999999999999887766643332222  357777888889999999999999999


Q ss_pred             HHhhcCcc-------hhhhHHHHHHHHHhhhhhhHHHHHHHhhc
Q 023846          178 FIDDNAPV-------AKKTAWLGVFYMCLPSGYAIGYVYGGWVG  214 (276)
Q Consensus       178 ~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  214 (276)
                      +++|..+.       +..|..++....+..+|..+|+.+++.+.
T Consensus       343 m~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll  386 (444)
T PRK09669        343 MFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWIL  386 (444)
T ss_pred             HHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998862       23467788999999999999999888775

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.06  E-value=5.9e-10  Score=98.38  Aligned_cols=153  Identities=12%  Similarity=0.042  Sum_probs=121.4

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhh----ccCChhh-HHHHHHHHHHHHHHHhhh-h-------hHHH
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLAR----SVNPFRL-IGVGLTVWTLAVVGCGFS-F-------SFWM  156 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~grr~~-~~~~~~~~~~~~~~~~~~-~-------~~~~  156 (276)
                      +++.+..|+++...|.+..+..+..++..|+.|.++|    |+|||+. +.+|....+++.+++... +       ....
T Consensus        26 ~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~  105 (428)
T PF13347_consen   26 YFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVW  105 (428)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHH
Confidence            4677888999999999999999999999999999999    7997665 456777778877766655 3       2334


Q ss_pred             HHHHHHHHHhhhhhhhhcHHHHHhhcCc-chhhhHHHHHHHHHhhhhhhHHHHHHHhhc------c--cchhHHHHHhHH
Q 023846          157 IAICRMLVGVGEASFISLAAPFIDDNAP-VAKKTAWLGVFYMCLPSGYAIGYVYGGWVG------H--YNWRYAFWGEAI  227 (276)
Q Consensus       157 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~------~--~~w~~~~~~~~~  227 (276)
                      +.+..++..++.........++..|..+ +++|.+..+.-..+..+|..+...+.+.+.      .  .+|++..++.++
T Consensus       106 ~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~i  185 (428)
T PF13347_consen  106 LFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAI  185 (428)
T ss_pred             HHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHH
Confidence            5677777788888888888999999997 578999999998888888865555444433      1  179999999999


Q ss_pred             HHHHHHHHHHhhccc
Q 023846          228 LMFPFAVLGFVMKPL  242 (276)
Q Consensus       228 ~~~~~~~~~~~~~~~  242 (276)
                      +.++..++..+..+|
T Consensus       186 v~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  186 VGLVFFLITFFFVKE  200 (428)
T ss_pred             HHHHHhhhhhheeee
Confidence            888877777777666

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.06  E-value=1.3e-09  Score=94.02  Aligned_cols=152  Identities=16%  Similarity=0.171  Sum_probs=98.8

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHH---HHHHHHhhhh----hHH-HHHHHHH
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWT---LAVVGCGFSF----SFW-MIAICRM  162 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~---~~~~~~~~~~----~~~-~~~~~r~  162 (276)
                      ++.++.|++.+++|.+.++..+...+.+++.|.+.||+|.|+-+++...+..   ...+...+.+    |.+ ..+++-+
T Consensus        33 WL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i  112 (412)
T PF01306_consen   33 WLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGI  112 (412)
T ss_dssp             HHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTT
T ss_pred             HHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556689999999999999999999999999999999997776654443322   2222223322    322 2233334


Q ss_pred             HHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhhccc
Q 023846          163 LVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGHYNWRYAFWGEAILMFPFAVLGFVMKPL  242 (276)
Q Consensus       163 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~  242 (276)
                      ..|++.....++.-+++.+..  ++.+.-.|-.-+.+++|.+++..++|.+.+.+-...||+..+.+++..++.++.+|+
T Consensus       113 ~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~~~~  190 (412)
T PF01306_consen  113 YLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAIILLLLLLLLKPD  190 (412)
T ss_dssp             TTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---
T ss_pred             HHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHHHHHHHHcCCc
Confidence            445555555566666665553  445566777888899999999999999886677788888777666666665556655


Q ss_pred             cc
Q 023846          243 QL  244 (276)
Q Consensus       243 ~~  244 (276)
                      .+
T Consensus       191 ~~  192 (412)
T PF01306_consen  191 VP  192 (412)
T ss_dssp             SS
T ss_pred             Cc
Confidence            43

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=99.04  E-value=7.2e-09  Score=85.89  Aligned_cols=143  Identities=21%  Similarity=0.383  Sum_probs=117.0

Q ss_pred             cccccccCCCc--hhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHH
Q 023846           90 TGIQGDFDLNN--FQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFS--FWMIAICRMLVG  165 (276)
Q Consensus        90 ~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~r~l~G  165 (276)
                      +.+..+++.+.  ...++..+.+.++..++.++.|.+.||+|||+.+..+.....++.+++.+..+  .+.+++.|++.|
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  105 (338)
T COG0477          26 PLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQG  105 (338)
T ss_pred             HHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            45555665554  47899999999999999999999999999998888888766666666666665  899999999999


Q ss_pred             hhhhhhhhcHHHHHhhcCcc-hhhhHHHHHHHH-HhhhhhhHHHHHHHhhcc---cchhHHHHHhHHHHHHH
Q 023846          166 VGEASFISLAAPFIDDNAPV-AKKTAWLGVFYM-CLPSGYAIGYVYGGWVGH---YNWRYAFWGEAILMFPF  232 (276)
Q Consensus       166 ~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~g~~~g~~~~~~l~~---~~w~~~~~~~~~~~~~~  232 (276)
                      ++.+...+....++.+++|+ ++|+...+.... ...+|..++|.+++.+..   .+||+.|..........
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (338)
T COG0477         106 LGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLL  177 (338)
T ss_pred             hhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            99999999999999999998 688999998888 588888889888777763   58999777766655433

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.03  E-value=2.8e-09  Score=92.92  Aligned_cols=148  Identities=17%  Similarity=0.179  Sum_probs=129.6

Q ss_pred             cccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh
Q 023846           92 IQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASF  171 (276)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~  171 (276)
                      -.++.+-.+...|........+-++.-++.+++.+|+|+-+++..++.+..+-++..++.+|.|+.+...+++|+..+..
T Consensus       397 Hled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~ali  476 (618)
T KOG3762|consen  397 HLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALI  476 (618)
T ss_pred             HHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHH
Confidence            34666666666787777777778888899999999999999999999999999999999999999999999999999999


Q ss_pred             hhcHHHHHhhcCcchhhhHHHHHHH-HHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhh
Q 023846          172 ISLAAPFIDDNAPVAKKTAWLGVFY-MCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVM  239 (276)
Q Consensus       172 ~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~  239 (276)
                      +.++.+|++...||+-|.++.++.+ ....+|--+|.+++|.+. .++-|..|...++.+++.+++....
T Consensus       477 Waa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~i  546 (618)
T KOG3762|consen  477 WAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISI  546 (618)
T ss_pred             HHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999775 556889999999999999 8888999999888776666555443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.00  E-value=2.1e-08  Score=90.26  Aligned_cols=139  Identities=13%  Similarity=0.136  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHHHHHhHH----HHhhhccCChhhHHHHHHHHHHHHHHHhhhhh---------HHHHHHHHHHHHhhhh
Q 023846          103 DGVLSSAFMVGLLVASPIF----ASLARSVNPFRLIGVGLTVWTLAVVGCGFSFS---------FWMIAICRMLVGVGEA  169 (276)
Q Consensus       103 ~~~~~~~~~~~~~i~~~~~----g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~r~l~G~~~~  169 (276)
                      .+++.++..+...+..++.    +++.+|++..+.+.+|.++.+++.+...+..+         .+++++..++.|+|..
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            5677777777776766666    56666666778889999999999888777655         4678889999999999


Q ss_pred             hhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-----------ccchhHHHHHhHHHHHHHHHHHHh
Q 023846          170 SFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-----------HYNWRYAFWGEAILMFPFAVLGFV  238 (276)
Q Consensus       170 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-----------~~~w~~~~~~~~~~~~~~~~~~~~  238 (276)
                      ...|...+++.+..|++.||+++|++.....+|..++..+.....           ..+..+.|...++.++++.++.++
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~  477 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL  477 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998888888887666654221           124678888888777666655555


Q ss_pred             hcc
Q 023846          239 MKP  241 (276)
Q Consensus       239 ~~~  241 (276)
                      ..|
T Consensus       478 ~~~  480 (500)
T PRK09584        478 TAP  480 (500)
T ss_pred             HHH
Confidence            443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.99  E-value=1.8e-08  Score=87.81  Aligned_cols=152  Identities=18%  Similarity=0.225  Sum_probs=107.8

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccC-ChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVN-PFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGE  168 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g-rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  168 (276)
                      +.+-++.|++..|+|.+.+...+..+++++++|+++||++ +|+++.+..++.++........++++.+++..++..+..
T Consensus        26 ~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~  105 (400)
T PF03825_consen   26 PLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFF  105 (400)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            4566778899999999999999999999999999999985 677787878887777777778889998888888888888


Q ss_pred             hhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHH-HHhhc-cc---chhHHHHHhHHHHHHHHHHHHhhcccc
Q 023846          169 ASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVY-GGWVG-HY---NWRYAFWGEAILMFPFAVLGFVMKPLQ  243 (276)
Q Consensus       169 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~-~~~l~-~~---~w~~~~~~~~~~~~~~~~~~~~~~~~~  243 (276)
                      ....|...++..+...  +++.-.|-.-..+++|-+++... ++.+. ..   +..+.+++.++..++.....+ ..|+.
T Consensus       106 ~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l-~lp~~  182 (400)
T PF03825_consen  106 SPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFAL-FLPKT  182 (400)
T ss_pred             ccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHH-hCCCC
Confidence            8888888888888775  33444555566666676665433 22222 22   223455555554433333322 34554


Q ss_pred             c
Q 023846          244 L  244 (276)
Q Consensus       244 ~  244 (276)
                      +
T Consensus       183 ~  183 (400)
T PF03825_consen  183 P  183 (400)
T ss_pred             c
Confidence            4

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.93  E-value=4.5e-09  Score=88.59  Aligned_cols=149  Identities=14%  Similarity=0.114  Sum_probs=121.9

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccC--ChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVN--PFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGE  168 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  168 (276)
                      ...+.+..+..+.|+..--..+.++++..+.|.++||++  |-.....++++..+......+++++.++++-++..|++.
T Consensus       296 wm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i  375 (464)
T KOG3764|consen  296 WMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGI  375 (464)
T ss_pred             HHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHH
Confidence            355667766668888888889999999999999999999  544445555666666667778999999999999999988


Q ss_pred             hhhhhcHHHHHhhcCcchh------hhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhh
Q 023846          169 ASFISLAAPFIDDNAPVAK------KTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVM  239 (276)
Q Consensus       169 ~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~  239 (276)
                      +...+..........+.++      -|...++...++.+|.++||.++|.+. ..|++|.-.+.++..++-..+..++
T Consensus       376 ~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll  453 (464)
T KOG3764|consen  376 GLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLL  453 (464)
T ss_pred             HHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence            8887777766666665443      468899999999999999999999999 9999999999999988877766655

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.90  E-value=6.5e-08  Score=89.02  Aligned_cols=149  Identities=16%  Similarity=0.144  Sum_probs=121.7

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhc-cCChhhHHHHHHHHHHHHHHHhhhh--------hHHHHHHHH
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARS-VNPFRLIGVGLTVWTLAVVGCGFSF--------SFWMIAICR  161 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~r  161 (276)
                      ++.+.+|++......+...+....-+..+++|+++|+ +|+++.+.++.++..++..+.++..        .....+++-
T Consensus        13 Yl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gL   92 (654)
T TIGR00926        13 YFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGL   92 (654)
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHH
Confidence            5566788888888888888888888999999999995 7999999999999999988777642        123466777


Q ss_pred             HHHHhhhhhhhhcHHHHHhhcCcch---hhhHHHHHHHHHhhhhhhHHHHHHHhhc-cc-------chhHHHHHhHHHHH
Q 023846          162 MLVGVGEASFISLAAPFIDDNAPVA---KKTAWLGVFYMCLPSGYAIGYVYGGWVG-HY-------NWRYAFWGEAILMF  230 (276)
Q Consensus       162 ~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~-------~w~~~~~~~~~~~~  230 (276)
                      .+..+|.|+.-+...+...|.++++   +|-..+.++..+.++|+.+++++.+++. ..       +|...|.+.++..+
T Consensus        93 aLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~  172 (654)
T TIGR00926        93 ALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMI  172 (654)
T ss_pred             HHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHH
Confidence            8888999999999999999999754   4677888999999999999998888886 32       69999999888777


Q ss_pred             HHHHHHHhh
Q 023846          231 PFAVLGFVM  239 (276)
Q Consensus       231 ~~~~~~~~~  239 (276)
                      +.+++....
T Consensus       173 ia~lvf~~g  181 (654)
T TIGR00926       173 LALIVFMAG  181 (654)
T ss_pred             HHHHHHHHh
Confidence            666655443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.89  E-value=2.1e-07  Score=81.21  Aligned_cols=123  Identities=10%  Similarity=0.026  Sum_probs=94.4

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHH-HHHHHHHHHHhh--hhhHHHHHHHHHHHHhh
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGL-TVWTLAVVGCGF--SFSFWMIAICRMLVGVG  167 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~r~l~G~~  167 (276)
                      .+.+.+|.+..+.+++.....++..+++++.+++.||++++....... .+..+.......  ..+.+.+.+..++.|++
T Consensus       233 ~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  312 (394)
T PRK11652        233 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFG  312 (394)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            445558999999999999999999999999999999998433322222 222222222222  23566777888999999


Q ss_pred             hhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc
Q 023846          168 EASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG  214 (276)
Q Consensus       168 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  214 (276)
                      .+...+...+++.|.+| ++++...++.+....+|..+++.+++.+.
T Consensus       313 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~  358 (394)
T PRK11652        313 AGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLP  358 (394)
T ss_pred             HHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            99999999999999887 67899999999999999999999998887

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.88  E-value=4.3e-08  Score=87.89  Aligned_cols=139  Identities=18%  Similarity=0.276  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhccCChhh-------HHHHHHHHHHHHHHH-----hhh-----hhHHHHHHHHHHHH
Q 023846          103 DGVLSSAFMVGLLVASPIFASLARSVNPFRL-------IGVGLTVWTLAVVGC-----GFS-----FSFWMIAICRMLVG  165 (276)
Q Consensus       103 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~-------~~~~~~~~~~~~~~~-----~~~-----~~~~~~~~~r~l~G  165 (276)
                      .+++.+.+.+..++.+++.+++.||+++|+.       +.+|.++.+++.+..     .++     .+.+.++...++.|
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            4666777778888899999999999999874       677777777665432     121     25777888899999


Q ss_pred             hhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc--c---------cchhHHHHHhHHHHHHHHH
Q 023846          166 VGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG--H---------YNWRYAFWGEAILMFPFAV  234 (276)
Q Consensus       166 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~--~---------~~w~~~~~~~~~~~~~~~~  234 (276)
                      +|.+...+...+++.+..|++.++.++|++.....+|..+|..++....  .         ....+.|...++..+++.+
T Consensus       391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v  470 (489)
T PRK10207        391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAV  470 (489)
T ss_pred             HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988876553  1         1256777777777776666


Q ss_pred             HHHhhcc
Q 023846          235 LGFVMKP  241 (276)
Q Consensus       235 ~~~~~~~  241 (276)
                      +.++..|
T Consensus       471 ~~~~~~~  477 (489)
T PRK10207        471 VMALMVP  477 (489)
T ss_pred             HHHHHHH
Confidence            6665544

>PRK11462 putative transporter; Provisional

Probab=98.88  E-value=1.2e-07  Score=84.53  Aligned_cols=115  Identities=13%  Similarity=0.088  Sum_probs=80.4

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHhhhhhhhhcHHH
Q 023846          100 NFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSF--SFWMIAICRMLVGVGEASFISLAAP  177 (276)
Q Consensus       100 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~~~~~~~~~~  177 (276)
                      +...+.+...+.++.+++.+++++++||+|+|+.+..+..+.++..++..+.+  +...+++.-++.|++.+...+...+
T Consensus       262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~  341 (460)
T PRK11462        262 PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWV  341 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33456677788888999999999999999999988766554444333333322  2334455556778887777777777


Q ss_pred             HHhhcCc-------chhhhHHHHHHHHHhhhhhhHHHHHHHhhc
Q 023846          178 FIDDNAP-------VAKKTAWLGVFYMCLPSGYAIGYVYGGWVG  214 (276)
Q Consensus       178 ~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  214 (276)
                      +++|..+       .+.-|..++.......+|..+++.+++.+.
T Consensus       342 m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL  385 (460)
T PRK11462        342 MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWML  385 (460)
T ss_pred             HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8887776       333456667777888888888888777665

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.88  E-value=2.5e-08  Score=88.32  Aligned_cols=145  Identities=12%  Similarity=0.109  Sum_probs=103.5

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCC---------hhhHHHHHHHHHHHHHHHhhhhh--H----
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNP---------FRLIGVGLTVWTLAVVGCGFSFS--F----  154 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~gr---------r~~~~~~~~~~~~~~~~~~~~~~--~----  154 (276)
                      .++.+.+|++..+.|++.++..+...+..+++|+++||.-+         |..=.++....+++.+..++.++  .    
T Consensus       283 tY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~  362 (466)
T KOG2532|consen  283 TYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAV  362 (466)
T ss_pred             HHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHH
Confidence            47788899999999999999999999999999999998755         22223555555666666666652  1    


Q ss_pred             HHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-cc---chhHHHHHhHHHHH
Q 023846          155 WMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HY---NWRYAFWGEAILMF  230 (276)
Q Consensus       155 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~---~w~~~~~~~~~~~~  230 (276)
                      ..+.+...+.|+..++.+    .-..+. .++.-+..+|+.+....+..+++|.+.+.+. +.   .|+++|++.+++.+
T Consensus       363 ~~l~~~~~~~g~~~~Gf~----~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~  437 (466)
T KOG2532|consen  363 ILLTIAIGLSGFNISGFY----KNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILI  437 (466)
T ss_pred             HHHHHHHHHcccchhhhH----hhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHH
Confidence            111122222333222221    112222 4588899999999999999999999999988 43   79999999999887


Q ss_pred             HHHHHHHhh
Q 023846          231 PFAVLGFVM  239 (276)
Q Consensus       231 ~~~~~~~~~  239 (276)
                      +..++..++
T Consensus       438 ~~~i~f~~f  446 (466)
T KOG2532|consen  438 VGNIIFLFF  446 (466)
T ss_pred             HhchheeEe
Confidence            777555444

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.87  E-value=2.4e-07  Score=79.09  Aligned_cols=146  Identities=18%  Similarity=0.176  Sum_probs=122.2

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhh-ccCChhhHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHH
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLAR-SVNPFRLIGVGLTVWTLAVVGCG---FSFSFWMIAICRMLVG  165 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d-~~grr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~r~l~G  165 (276)
                      |+=.+.||++..+...++.....|..++....|++.. |.++++.-.+++...+++..+..   ...+.+.+...-++.|
T Consensus       233 Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G  312 (403)
T PF03209_consen  233 PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLG  312 (403)
T ss_pred             CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            6667889999999999999999999999999998877 68888888899888887776544   4457889999999999


Q ss_pred             hhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-----------ccchhHHHHHhHHHHHHHHH
Q 023846          166 VGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-----------HYNWRYAFWGEAILMFPFAV  234 (276)
Q Consensus       166 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-----------~~~w~~~~~~~~~~~~~~~~  234 (276)
                      ++.|.......+.+.+...+++.|..+|.++....++..++..+++.+.           ..+|..+|.+.++..++..+
T Consensus       313 ~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~  392 (403)
T PF03209_consen  313 LGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALV  392 (403)
T ss_pred             HhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988888887764           12466677777665544443


Q ss_pred             H
Q 023846          235 L  235 (276)
Q Consensus       235 ~  235 (276)
                      +
T Consensus       393 l  393 (403)
T PF03209_consen  393 L  393 (403)
T ss_pred             H
Confidence            3

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.85  E-value=1.3e-07  Score=83.60  Aligned_cols=135  Identities=16%  Similarity=0.197  Sum_probs=110.3

Q ss_pred             HHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhh
Q 023846          110 FMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKT  189 (276)
Q Consensus       110 ~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~  189 (276)
                      ..+...+.++..|.++|++|||..+.+......+..+...+.. +|.++ .--+.|. .+.......++++|....++|.
T Consensus        71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~-~~~l~g~-~~~~~s~~~a~vadis~~~~R~  147 (463)
T KOG2816|consen   71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL-LLGLSGG-FSAIFSVGFAYVADISSEEERS  147 (463)
T ss_pred             hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh-hcccccc-hhhhhhhhhhheeeccchhHHH
Confidence            3677789999999999999999999999999888887776665 33333 2222222 2456677889999999999999


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhcccccCCC
Q 023846          190 AWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQLKGF  247 (276)
Q Consensus       190 ~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (276)
                      ..+|+.......+..++|.+++.+. ..|.-.+|.+..+..++..+..++..||+..+.
T Consensus       148 ~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~  206 (463)
T KOG2816|consen  148 SSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEK  206 (463)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcc
Confidence            9999999999999999999999999 888999999999988888888888888765543

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.84  E-value=1.4e-07  Score=82.82  Aligned_cols=126  Identities=11%  Similarity=-0.036  Sum_probs=97.7

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHH
Q 023846           97 DLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAA  176 (276)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~  176 (276)
                      +.+....+...+.+..+..++.++.+++.||+++|+++.++..+.++..++..+.++... ...-++.|++.+..+|...
T Consensus       265 ~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~  343 (410)
T TIGR00885       265 GMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIY  343 (410)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHH
Confidence            344444555677777888999999999999999999999999888888888877766444 5667788888999999999


Q ss_pred             HHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-cc------chhHHHHHh
Q 023846          177 PFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HY------NWRYAFWGE  225 (276)
Q Consensus       177 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~------~w~~~~~~~  225 (276)
                      ++..+..+++.+....++...  .+|..+.|.+.|++. ..      +.+..|++.
T Consensus       344 sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~  397 (410)
T TIGR00885       344 GIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILP  397 (410)
T ss_pred             HHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHHhcccccCccchHHHHH
Confidence            999999986655434444443  389999999999998 32      477777764

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.80  E-value=2.3e-08  Score=86.12  Aligned_cols=111  Identities=10%  Similarity=-0.038  Sum_probs=85.0

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhh--hh--hHHHHHHHHHHHHh
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGF--SF--SFWMIAICRMLVGV  166 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~r~l~G~  166 (276)
                      ++++.+|.+..+.+++.+.+.++..++.++.|++.||+|+|+.+..+..+.+.+..+..+  ..  +.+.+.+...+.++
T Consensus       251 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (366)
T TIGR00886       251 FFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFF  330 (366)
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence            556678999999999999999999999999999999999998887777666655544433  22  55555555555555


Q ss_pred             hhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhh
Q 023846          167 GEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSG  202 (276)
Q Consensus       167 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  202 (276)
                      +.|........++.+..| +++|+++|+.+...++|
T Consensus       331 ~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       331 FSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             Hhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            556555666677788877 79999999999888776

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.80  E-value=3.3e-07  Score=80.17  Aligned_cols=124  Identities=17%  Similarity=0.198  Sum_probs=100.7

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHhhh
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSF--SFWMIAICRMLVGVGE  168 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~  168 (276)
                      +.+-..|-++....+.......+.+++.+++.++.+|+|+|+++.++.++.+++.++.-+.+  +.+.+++..++.++|.
T Consensus       262 y~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~  341 (467)
T COG2211         262 YVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGT  341 (467)
T ss_pred             eEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHh
Confidence            33444566666667778888888888899999999999999999999999999998887776  7888889999999999


Q ss_pred             hhhhhcHHHHHhhcCcch-------hhhHHHHHHHHHhhhhhhHHHHHHHhhc
Q 023846          169 ASFISLAAPFIDDNAPVA-------KKTAWLGVFYMCLPSGYAIGYVYGGWVG  214 (276)
Q Consensus       169 ~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~g~~~~~~l~  214 (276)
                      +...+...++++|..+-.       +-|...+....+.=+|.+++..+.+++.
T Consensus       342 ~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L  394 (467)
T COG2211         342 GIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWIL  394 (467)
T ss_pred             hccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998877532       2377778888888888888776665553

>PRK11462 putative transporter; Provisional

Probab=98.80  E-value=2.2e-07  Score=82.81  Aligned_cols=153  Identities=10%  Similarity=-0.028  Sum_probs=114.3

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhc----cCChhh-HHHHHHHHHHHHHHHhhhhh------HHHHHH
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARS----VNPFRL-IGVGLTVWTLAVVGCGFSFS------FWMIAI  159 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~grr~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~  159 (276)
                      ++.+..|+++..+|.+..+.-+--++.-|+.|+++||    +||||. ++++....+++..++-..++      ...+.+
T Consensus        35 fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~  114 (460)
T PRK11462         35 FYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAI  114 (460)
T ss_pred             HHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHH
Confidence            5667889999999999999999999999999999996    687654 45666667766655543332      445566


Q ss_pred             HHHHHHhhhhhhhhcHHHHHhhcCc-chhhhHHHHHHHHHhhhhhhHHHHHHHhhc-c-------cchhHHHHHhHHHHH
Q 023846          160 CRMLVGVGEASFISLAAPFIDDNAP-VAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-H-------YNWRYAFWGEAILMF  230 (276)
Q Consensus       160 ~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~-------~~w~~~~~~~~~~~~  230 (276)
                      ..++..++.......-.++..|+.+ +++|++..++...+..+|..+++.+...+. .       .+|+....+.+++.+
T Consensus       115 ~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~  194 (460)
T PRK11462        115 TYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAF  194 (460)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHH
Confidence            6677788888888888888899887 789999999999999998887766654332 1       367877777777766


Q ss_pred             HHHHHHHhhcccc
Q 023846          231 PFAVLGFVMKPLQ  243 (276)
Q Consensus       231 ~~~~~~~~~~~~~  243 (276)
                      ++.++.++..+|+
T Consensus       195 i~~~i~~~~~kE~  207 (460)
T PRK11462        195 MMLAFCFFTTKER  207 (460)
T ss_pred             HHHHHHHhcceec
Confidence            6655555444443

>PRK09848 glucuronide transporter; Provisional

Probab=98.79  E-value=2.2e-07  Score=82.54  Aligned_cols=124  Identities=11%  Similarity=-0.043  Sum_probs=84.2

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhcc----CChhhH-HHHHHHHHHHHHH-Hhh----hh--hHHHH
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSV----NPFRLI-GVGLTVWTLAVVG-CGF----SF--SFWMI  157 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~----grr~~~-~~~~~~~~~~~~~-~~~----~~--~~~~~  157 (276)
                      .++.+.+|++..++|.+.+...+..++..++.|+++||.    |||+.. .++.+...+..++ ...    .+  ....+
T Consensus        33 ~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (448)
T PRK09848         33 SYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYA  112 (448)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHH
Confidence            477788899999999999999999999999999999996    666644 5555544433333 221    11  22334


Q ss_pred             HHHHHHHHhhhhhhhhcHHHHHhhcCc-chhhhHHHHHHHHHhh-----hhhhHHHHHHHhh
Q 023846          158 AICRMLVGVGEASFISLAAPFIDDNAP-VAKKTAWLGVFYMCLP-----SGYAIGYVYGGWV  213 (276)
Q Consensus       158 ~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~-----~g~~~g~~~~~~l  213 (276)
                      ++..++.+++.+...+...++..+..+ +++|.+..++-..+.+     ++..++|.+++..
T Consensus       113 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~  174 (448)
T PRK09848        113 YLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSS  174 (448)
T ss_pred             HHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            455667788888887777777676554 4678887666554333     4455566665543

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.79  E-value=4.3e-10  Score=90.67  Aligned_cols=124  Identities=13%  Similarity=0.062  Sum_probs=104.7

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhc-cCChhhHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHH
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARS-VNPFRLIGVGLTVWTLAVVGCG---FSFSFWMIAICRMLVG  165 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~r~l~G  165 (276)
                      .++..+.+++.++.-++.++|....++.+.+.|++.|| +|-|..-++-+.+..++-++.+   ..+.+|.+.++|++.|
T Consensus        68 ~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FG  147 (459)
T KOG4686|consen   68 IDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFG  147 (459)
T ss_pred             hhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeec
Confidence            46677778888888999999999999999999999996 7888877776666666666544   4679999999999999


Q ss_pred             hhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhh
Q 023846          166 VGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWV  213 (276)
Q Consensus       166 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  213 (276)
                      +|.-....+...++.-|+.-|+.+.++|+......+|..+--.+.+++
T Consensus       148 IGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~l  195 (459)
T KOG4686|consen  148 IGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFL  195 (459)
T ss_pred             cCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHH
Confidence            998888888899999999999999999999999999987755444444

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.78  E-value=1.2e-08  Score=67.60  Aligned_cols=74  Identities=30%  Similarity=0.385  Sum_probs=68.5

Q ss_pred             CCCCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHH
Q 023846           85 TCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIA  158 (276)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (276)
                      ++|.+|.+++|.++|.++.+++.+.+.+||.+|++...++.++..+++.+..+++...+..+.+++.++.+.+.
T Consensus        11 yTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~   84 (85)
T PF06779_consen   11 YTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS   84 (85)
T ss_pred             HHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence            45788999999999999999999999999999999999999998889999999999999999999998877653

Note that many members are hypothetical proteins.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.78  E-value=2.1e-07  Score=84.20  Aligned_cols=109  Identities=17%  Similarity=0.044  Sum_probs=87.6

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHhhhccCC-hhhHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHhhhhhhhhcHHHH
Q 023846          102 QDGVLSSAFMVGLLVASPIFASLARSVNP-FRLIGVGLTVWTLAVVGCGFS--FSFWMIAICRMLVGVGEASFISLAAPF  178 (276)
Q Consensus       102 ~~~~~~~~~~~~~~i~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~~~~~~~~~~~~~  178 (276)
                      ..++....+.++..+++.+.|.+..+++| |+.++++.+++.+++.+++..  +|....+..-++.|++.|.........
T Consensus       350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~  429 (599)
T PF06609_consen  350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVI  429 (599)
T ss_pred             eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHe
Confidence            56888888999999999999999988776 556667777776655444433  466666788899999999988888888


Q ss_pred             HhhcCcchhhhHHHHHHHHHhhhhhhHHHHHH
Q 023846          179 IDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYG  210 (276)
Q Consensus       179 i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  210 (276)
                      +.-.+|.+..|.+.++......+|+.+|..+.
T Consensus       430 ~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy  461 (599)
T PF06609_consen  430 AQLIVPDEDIGTATGLTGSIRSIGGSIGYAIY  461 (599)
T ss_pred             eEeeeCchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            88888999999999999999999998886654

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.77  E-value=1.7e-07  Score=79.52  Aligned_cols=137  Identities=16%  Similarity=0.137  Sum_probs=112.0

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhh
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEAS  170 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~  170 (276)
                      ++.+..|.+..+.+...+.+..+.++|.++..++..|+...+.+.+..++..+.++..++.++... +.+-++.|+..+.
T Consensus       262 y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~-~~~l~~ig~F~si  340 (422)
T COG0738         262 YLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVA-LYALFLIGLFNSI  340 (422)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHH-HHHHHHHHHHhHH
Confidence            444558999999999999999999999999999999999999999999988888888888888444 4455678999999


Q ss_pred             hhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHH
Q 023846          171 FISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMF  230 (276)
Q Consensus       171 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~  230 (276)
                      .+|...++..+..|  +.....|..-....+|+++-|.+.|++. ..|-...+.....++.
T Consensus       341 mfPTIfslal~~l~--~~ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~  399 (422)
T COG0738         341 MFPTIFSLALKNLG--EHTSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCY  399 (422)
T ss_pred             HHHHHHHHHHhccC--ccccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            99999999999998  3444455555666789999999999999 7777777664444443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.73  E-value=1.7e-07  Score=82.71  Aligned_cols=152  Identities=14%  Similarity=0.096  Sum_probs=122.1

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhcc-----CChhhHHHHHHHHHHHHHHHhhhh----hHHHHHHH
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSV-----NPFRLIGVGLTVWTLAVVGCGFSF----SFWMIAIC  160 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----grr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  160 (276)
                      +.+.+++|+++.+...+.+...+.- ...++.|.++|.+     .||+.++++.++.+++.+.++..+    +.....+.
T Consensus        14 ~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~   92 (433)
T PF03092_consen   14 PFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVL   92 (433)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHH
Confidence            6889999999999988888777666 4567899999976     367777788887766666555433    56666777


Q ss_pred             HHHHHhhhhhhhhcHHHHHhhcCc--chhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHH
Q 023846          161 RMLVGVGEASFISLAAPFIDDNAP--VAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGF  237 (276)
Q Consensus       161 r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~  237 (276)
                      .++..+|......++-+++.|...  ++.||...+.......+|.+++..++|.+. ..++++.|.+.+++..+..+..+
T Consensus        93 l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~  172 (433)
T PF03092_consen   93 LFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVAL  172 (433)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHH
Confidence            788889999999999999999873  344888899999999999999999999988 88999999998888777776666


Q ss_pred             hhccc
Q 023846          238 VMKPL  242 (276)
Q Consensus       238 ~~~~~  242 (276)
                      ++.+|
T Consensus       173 ~~~~e  177 (433)
T PF03092_consen  173 FLLEE  177 (433)
T ss_pred             Hhhhh
Confidence            66665

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.73  E-value=6.6e-11  Score=105.00  Aligned_cols=155  Identities=12%  Similarity=0.023  Sum_probs=103.7

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHh--h--hhhH-----HHHHHH
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCG--F--SFSF-----WMIAIC  160 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~--~--~~~~-----~~~~~~  160 (276)
                      +.+.+..+.+..  -.......+...++.++..++.||+|||++++.+.++.++..+.++  .  ..+.     ...++.
T Consensus       277 ~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  354 (451)
T PF00083_consen  277 PSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVF  354 (451)
T ss_pred             cccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccee
Confidence            466666776655  2223333445556777777999999999999999988887777664  1  1111     111122


Q ss_pred             HHHHHhhhh-hhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHh
Q 023846          161 RMLVGVGEA-SFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFV  238 (276)
Q Consensus       161 r~l~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~  238 (276)
                      -.+..++.+ +..+....+..|.+|.+.|+++.++......++.++++.+...+. ..+-...+++.+++.++..+..++
T Consensus       355 ~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~  434 (451)
T PF00083_consen  355 LALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYF  434 (451)
T ss_pred             eeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeE
Confidence            222222222 334556678899999999999999999999999999988877776 444245566666666666777777


Q ss_pred             hcccccCC
Q 023846          239 MKPLQLKG  246 (276)
Q Consensus       239 ~~~~~~~~  246 (276)
                      +.||+...
T Consensus       435 ~lpET~g~  442 (451)
T PF00083_consen  435 FLPETKGK  442 (451)
T ss_pred             EEeeCCCC
Confidence            78887644

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.72  E-value=4.4e-06  Score=72.13  Aligned_cols=149  Identities=9%  Similarity=-0.010  Sum_probs=119.8

Q ss_pred             cccccc-cCCCchhHH-HHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 023846           90 TGIQGD-FDLNNFQDG-VLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVG  167 (276)
Q Consensus        90 ~~~~~~-~~~~~~~~~-~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  167 (276)
                      |++.+. .|++..++. -+.-...-.+.+..++...+.|.++.|++++++.+...+...+..+.++...+-+..++-|++
T Consensus        28 ~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~  107 (412)
T PF01770_consen   28 PYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLA  107 (412)
T ss_pred             HHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHH
Confidence            666665 899888874 566677777888889999999999999999999999999999999999999999999999998


Q ss_pred             hhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc---ccchhHHHHHhHHHHHHHHHHHHhh
Q 023846          168 EASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG---HYNWRYAFWGEAILMFPFAVLGFVM  239 (276)
Q Consensus       168 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~---~~~w~~~~~~~~~~~~~~~~~~~~~  239 (276)
                      .+. ..+-.+++-...|+++--++.+......-+|..++.+++..+.   ...++...++......+.++..+++
T Consensus       108 ~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fL  181 (412)
T PF01770_consen  108 TAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFL  181 (412)
T ss_pred             HHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence            665 5667889988889998889999999999999999999988777   3345555555544444444444444

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.72  E-value=5.9e-07  Score=67.38  Aligned_cols=107  Identities=11%  Similarity=0.188  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcc
Q 023846          106 LSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPV  185 (276)
Q Consensus       106 ~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~  185 (276)
                      -.++......+++++.+.+.+++|.|+.++++.++..+-... -+.++.+.++.+-++.|++.+..++....++.+..++
T Consensus        42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~  120 (156)
T PF05978_consen   42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTE  120 (156)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence            356666667788888999999999999999999999865443 3567888999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHhhhhhhHHHHHHHhh
Q 023846          186 AKKTAWLGVFYMCLPSGYAIGYVYGGWV  213 (276)
Q Consensus       186 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l  213 (276)
                      +.+++..+++......+.++|.++.-.+
T Consensus       121 ~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  121 ETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988888888887765544

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.70  E-value=1.6e-06  Score=76.22  Aligned_cols=143  Identities=13%  Similarity=0.058  Sum_probs=94.4

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHh-----hhhhHHHHHHHHHHHH
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCG-----FSFSFWMIAICRMLVG  165 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~r~l~G  165 (276)
                      .+++.+|.++.+.++.......+..+++.+.+.+.++..+++.+.....+..++.++..     ..++++.+++..++.|
T Consensus       244 ~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~  323 (413)
T PRK15403        244 ILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYA  323 (413)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence            44566799999999998888888888888888876554444443333333333332222     1234444567888889


Q ss_pred             hhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhcccchhHHHHHhHHHHHHHHH
Q 023846          166 VGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGHYNWRYAFWGEAILMFPFAV  234 (276)
Q Consensus       166 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~w~~~~~~~~~~~~~~~~  234 (276)
                      +|.+...+......- .-....+|++.++.+.....+..+++..++++...+-++.|...+.+..+...
T Consensus       324 ~G~~~~~p~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  391 (413)
T PRK15403        324 FGIGLIFPTLFRFTL-FSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVAGVIVV  391 (413)
T ss_pred             HHHHHHhHHHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence            998888877764332 11223479999999988888888899999988744556666666655444333

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.69  E-value=1.3e-06  Score=79.05  Aligned_cols=157  Identities=10%  Similarity=-0.056  Sum_probs=101.7

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhH-------------HH
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSF-------------WM  156 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~-------------~~  156 (276)
                      +.+.+..|.+... .+...+..+..+++..+..++.||+|||+.++.+...+.++.++++.....             ..
T Consensus       319 ~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (513)
T KOG0254|consen  319 TTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLA  397 (513)
T ss_pred             HHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHH
Confidence            4556666665433 555556666677777888999999999999999999999988877754321             11


Q ss_pred             HHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHH-
Q 023846          157 IAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAV-  234 (276)
Q Consensus       157 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~-  234 (276)
                      +....+.......+..++...+.+|.+|.+.|+++.++......+...+-......+. ..++...|...+..+.+..+ 
T Consensus       398 ~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~  477 (513)
T KOG0254|consen  398 IVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLII  477 (513)
T ss_pred             HHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence            1222222222223334555568899999999999999888777666554433322232 22345666666666666666 


Q ss_pred             HHHhhcccccCCC
Q 023846          235 LGFVMKPLQLKGF  247 (276)
Q Consensus       235 ~~~~~~~~~~~~~  247 (276)
                      ..+++.||.....
T Consensus       478 fv~~~~pETkg~s  490 (513)
T KOG0254|consen  478 FVFFFVPETKGLT  490 (513)
T ss_pred             HheEEcccCCCCc
Confidence            5666678876543

>TIGR01272 gluP glucose/galactose transporter

Probab=98.68  E-value=2e-07  Score=78.70  Aligned_cols=90  Identities=11%  Similarity=0.103  Sum_probs=78.2

Q ss_pred             hhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-c-------------
Q 023846          150 FSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-H-------------  215 (276)
Q Consensus       150 ~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~-------------  215 (276)
                      ...+++.++++-++.|.|.+...+..+.++++..+++++++.+++.+.++.+|.+++|++++.+. .             
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~   85 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN   85 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence            45789999999999999999999999999999999999999999999999999999999999776 2             


Q ss_pred             ---cchhHHHHHhHHHHHHHHHHHHhh
Q 023846          216 ---YNWRYAFWGEAILMFPFAVLGFVM  239 (276)
Q Consensus       216 ---~~w~~~~~~~~~~~~~~~~~~~~~  239 (276)
                         ..|+++|++.+.+..+..+++.+.
T Consensus        86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~  112 (310)
T TIGR01272        86 AEAAKVHTPYLLLAGALAVLAIIFAFL  112 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence               379999997777665555544443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.66  E-value=1.6e-06  Score=77.01  Aligned_cols=140  Identities=16%  Similarity=0.041  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHHHHhHHHHhhhccCC-hhhHHHHHHHHHHHHHHHhhhhh---------------------HHHHHHHHH
Q 023846          105 VLSSAFMVGLLVASPIFASLARSVNP-FRLIGVGLTVWTLAVVGCGFSFS---------------------FWMIAICRM  162 (276)
Q Consensus       105 ~~~~~~~~~~~i~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~r~  162 (276)
                      +....+.+...+.+++.-++.+++|+ |++..++.++.+++.+...+.++                     .+..++...
T Consensus       309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  388 (477)
T TIGR01301       309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA  388 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence            34455555556777888899999995 67778888888888777665543                     366778889


Q ss_pred             HHHhhhhhhhhcHHHHHhhcCcc--hhhhHHHHHHHHHhhhhhhHHHHHHHhhc---ccchhHHHHHhHHHHHHHHHHHH
Q 023846          163 LVGVGEASFISLAAPFIDDNAPV--AKKTAWLGVFYMCLPSGYAIGYVYGGWVG---HYNWRYAFWGEAILMFPFAVLGF  237 (276)
Q Consensus       163 l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~---~~~w~~~~~~~~~~~~~~~~~~~  237 (276)
                      +.|+..+..+..-++++++..++  ++.|..+|+++.+..+.+++..+..|.+.   ..+-.+.+.+.++..++..+..+
T Consensus       389 ~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~  468 (477)
T TIGR01301       389 ILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLAL  468 (477)
T ss_pred             HhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999995  45699999999999999999887777754   34567889999999999998888


Q ss_pred             hhccccc
Q 023846          238 VMKPLQL  244 (276)
Q Consensus       238 ~~~~~~~  244 (276)
                      +..|+.+
T Consensus       469 ~~~~~~~  475 (477)
T TIGR01301       469 ILLPRPR  475 (477)
T ss_pred             HhCCCCC
Confidence            8888754

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.65  E-value=3.9e-08  Score=84.50  Aligned_cols=132  Identities=10%  Similarity=-0.040  Sum_probs=95.6

Q ss_pred             HHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHh-hhhhhhhcHHHHHhhcCcchhh
Q 023846          114 LLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFS----FWMIAICRMLVGV-GEASFISLAAPFIDDNAPVAKK  188 (276)
Q Consensus       114 ~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~l~G~-~~~~~~~~~~~~i~~~~~~~~r  188 (276)
                      ++.+-.+...++|++|||++.+-|.+++++..+..+...+    -..+++...+..+ +.-+.......+-+|.+|.+-|
T Consensus       361 ~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR  440 (538)
T KOG0252|consen  361 TVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVR  440 (538)
T ss_pred             cCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHh
Confidence            3446677788899999999999999999999998887765    1222222222222 2223334445566999999999


Q ss_pred             hHHHHHHHHHhhhhhhHHHHHHHhhc------ccchhHHHHHhHHHHHHHHHHHHhhcccccCC
Q 023846          189 TAWLGVFYMCLPSGYAIGYVYGGWVG------HYNWRYAFWGEAILMFPFAVLGFVMKPLQLKG  246 (276)
Q Consensus       189 ~~~~~~~~~~~~~g~~~g~~~~~~l~------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (276)
                      ++..|+....+-+|.++|...-.++.      ..+.++++++.+...++..++.+ +.||+.+.
T Consensus       441 ~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~-l~pEtk~~  503 (538)
T KOG0252|consen  441 STCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTL-LIPETKGK  503 (538)
T ss_pred             hhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeE-Eeeccccc
Confidence            99999999999999999988777766      35789999999887765555444 44665443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.64  E-value=2.4e-06  Score=73.01  Aligned_cols=126  Identities=11%  Similarity=0.089  Sum_probs=97.4

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccC-----ChhhHHH-HHHHHHHHHHHHhhh-----h-------
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVN-----PFRLIGV-GLTVWTLAVVGCGFS-----F-------  152 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g-----rr~~~~~-~~~~~~~~~~~~~~~-----~-------  152 (276)
                      .+..|++++..-.+.+.+...+.. ...+.+|+.+|+.+     ||..+++ |.++...+..+..++     .       
T Consensus         5 VMIvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~   83 (403)
T PF03209_consen    5 VMIVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG   83 (403)
T ss_pred             hHHHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence            455788999888888888877655 56899999999988     7766654 455555544444332     2       


Q ss_pred             h--HH--HHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccc
Q 023846          153 S--FW--MIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYN  217 (276)
Q Consensus       153 ~--~~--~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~  217 (276)
                      +  .+  ...+...+.|+|.+...+...++++|..|+++|+++.++......+|.+++..+.+.+. .+.
T Consensus        84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s  153 (403)
T PF03209_consen   84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFS  153 (403)
T ss_pred             ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence            1  22  33445678999999999999999999999999999999999999999999998888777 444

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.50  E-value=3.9e-06  Score=73.61  Aligned_cols=154  Identities=10%  Similarity=0.030  Sum_probs=119.8

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhc----cCCh-hhHHHHHHHHHHHHHHHhhhh------hHHHHHH
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARS----VNPF-RLIGVGLTVWTLAVVGCGFSF------SFWMIAI  159 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~grr-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  159 (276)
                      ++.+.+|+++..+|.+..+.=+--++.-|+.|.+.||    +||+ +.++++.+-.++.+.++-.++      +.....+
T Consensus        38 fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~v  117 (467)
T COG2211          38 FYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALV  117 (467)
T ss_pred             HHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHH
Confidence            5677889999999999999999999999999999996    6764 456677777887777776665      4556667


Q ss_pred             HHHHHHhhhhhhhhcHHHHHhhcCc-chhhhHHHHHHHHHhhhhhhHHHHHH----Hhhc----ccchhHHHHHhHHHHH
Q 023846          160 CRMLVGVGEASFISLAAPFIDDNAP-VAKKTAWLGVFYMCLPSGYAIGYVYG----GWVG----HYNWRYAFWGEAILMF  230 (276)
Q Consensus       160 ~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~----~~l~----~~~w~~~~~~~~~~~~  230 (276)
                      ...+.+++.......-.++..++.+ +++|.+..+.-+.+..+|..+...+.    ..+.    ..||+.+.++.+++.+
T Consensus       118 tY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~  197 (467)
T COG2211         118 TYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGV  197 (467)
T ss_pred             HHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHH
Confidence            7888889888888777888888775 68999999999999999876644333    2332    2478888888888887


Q ss_pred             HHHHHHHhhccccc
Q 023846          231 PFAVLGFVMKPLQL  244 (276)
Q Consensus       231 ~~~~~~~~~~~~~~  244 (276)
                      +..+++++-.+|+.
T Consensus       198 i~~l~~~~~v~ER~  211 (467)
T COG2211         198 ILLLFCFFNVKERV  211 (467)
T ss_pred             HHHHHHHHHhhccc
Confidence            77777777655544

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.47  E-value=1.6e-05  Score=71.01  Aligned_cols=144  Identities=14%  Similarity=0.049  Sum_probs=108.4

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHH-HHHHHHHHHHHHhhh--hhHHHHHHHHHHHHhhhhhhhhcHHHH
Q 023846          102 QDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGV-GLTVWTLAVVGCGFS--FSFWMIAICRMLVGVGEASFISLAAPF  178 (276)
Q Consensus       102 ~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~~~~~~~~~~~~~  178 (276)
                      ..++..++..+..++..|+.|.++|+-|+|+.++. ..++..+...++.+.  ++++...+..++.-++.+.......++
T Consensus        71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~  150 (477)
T PF11700_consen   71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY  150 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677889999999999999999999887665554 444455566665553  345555555666667888888888999


Q ss_pred             HhhcCcchhh--------------------------hHHHHHHHHHhhhhhhHHHHHHHhhc--c-------cchhHHHH
Q 023846          179 IDDNAPVAKK--------------------------TAWLGVFYMCLPSGYAIGYVYGGWVG--H-------YNWRYAFW  223 (276)
Q Consensus       179 i~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~g~~~~~~l~--~-------~~w~~~~~  223 (276)
                      +.|..+++.+                          ++..+.-...+.+|.++.-++.-.+.  .       ..-|..+.
T Consensus       151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~  230 (477)
T PF11700_consen  151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFL  230 (477)
T ss_pred             hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHH
Confidence            9999999888                          89999999999999988776654443  1       23588888


Q ss_pred             HhHHHHHHHHHHHHhhcccccC
Q 023846          224 GEAILMFPFAVLGFVMKPLQLK  245 (276)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~  245 (276)
                      +.++.-++..+..+++.|+.++
T Consensus       231 ~~a~ww~vfsiP~~~~~~~~~~  252 (477)
T PF11700_consen  231 IVALWWLVFSIPLFLWLPDRPG  252 (477)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCC
Confidence            8888888887777777776654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.43  E-value=2.9e-05  Score=70.43  Aligned_cols=152  Identities=11%  Similarity=-0.059  Sum_probs=106.4

Q ss_pred             ccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHhhhh
Q 023846           93 QGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFW---MIAICRMLVGVGEA  169 (276)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~r~l~G~~~~  169 (276)
                      ...+|.+.   ..................+...|++|||.....+.++..++.++.++.....   ...+...+..++.+
T Consensus       345 ~~~lg~~~---~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (521)
T KOG0255|consen  345 VSGLGGNI---YLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIG  421 (521)
T ss_pred             hhhcCchH---HHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Confidence            34455443   3333333335555666668999999999999999999999999888876443   35566666667777


Q ss_pred             hhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhhcccccCCC
Q 023846          170 SFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGHYNWRYAFWGEAILMFPFAVLGFVMKPLQLKGF  247 (276)
Q Consensus       170 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (276)
                      ..+.....+.+|++|...|..+.+.......+|.+++|.+............+...+....+..++..++.||+....
T Consensus       422 ~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~  499 (521)
T KOG0255|consen  422 SAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKGKP  499 (521)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCCCC
Confidence            777777899999999999999999999999999999998876554322222222234444555555556667765443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.43  E-value=2e-06  Score=76.63  Aligned_cols=137  Identities=14%  Similarity=0.069  Sum_probs=90.8

Q ss_pred             cccccc-cCCCchhHHHHHHHHHHHHHHHHhHHHHhhhc----cCChhhHHHHHHHHHH-HHHHHhhhhhHHHHHHHHHH
Q 023846           90 TGIQGD-FDLNNFQDGVLSSAFMVGLLVASPIFASLARS----VNPFRLIGVGLTVWTL-AVVGCGFSFSFWMIAICRML  163 (276)
Q Consensus        90 ~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~grr~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~l  163 (276)
                      |.+.++ .|.+..+.+.+.+.+.++.+++.+++|+++||    ..+|........++.+ +........+.......-+.
T Consensus       297 pl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~  376 (495)
T KOG2533|consen  297 PLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLI  376 (495)
T ss_pred             HHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHh
Confidence            455555 56899999999999999999999999999999    6667666666555544 43444444334444444444


Q ss_pred             HHhhhhhhhhcHHHHHhhcCcchh-hhHHHHHHHHHhhhhhhHH-HHHHHhhc-ccchhHHHHHhH
Q 023846          164 VGVGEASFISLAAPFIDDNAPVAK-KTAWLGVFYMCLPSGYAIG-YVYGGWVG-HYNWRYAFWGEA  226 (276)
Q Consensus       164 ~G~~~~~~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~g~~~g-~~~~~~l~-~~~w~~~~~~~~  226 (276)
                      .+.+.....+.+...+++....+. |-...+....+.+.++.++ ++..+... .++|.+.|+...
T Consensus       377 ~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~  442 (495)
T KOG2533|consen  377 GPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLV  442 (495)
T ss_pred             cchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHH
Confidence            445566667777888888776554 4444555555555555554 44455555 678888884433

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.41  E-value=1.2e-05  Score=71.18  Aligned_cols=123  Identities=15%  Similarity=0.128  Sum_probs=110.7

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHH-HhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFA-SLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEA  169 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~  169 (276)
                      ++...++++..+.+.+.+...+...+++++.. .+...+|-|++...|++.-.+...+.+++++.|+++...++.++. +
T Consensus       267 yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-~  345 (463)
T KOG2816|consen  267 YLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-G  345 (463)
T ss_pred             EEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-c
Confidence            67788999999999999998888889888888 677789999999999999999999999999999999998887776 6


Q ss_pred             hhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc
Q 023846          170 SFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG  214 (276)
Q Consensus       170 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  214 (276)
                      ...+...+.++.+.+++++|+++++......+..+++|.+-+.+.
T Consensus       346 ~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~  390 (463)
T KOG2816|consen  346 IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF  390 (463)
T ss_pred             chhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence            777889999999999999999999999999999999988776664

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.32  E-value=5.7e-05  Score=67.57  Aligned_cols=137  Identities=10%  Similarity=0.054  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhccCC--hh-----hHHHHHHHHHHHHHHHhhh---------hhHHHHHHHHHHHHh
Q 023846          103 DGVLSSAFMVGLLVASPIFASLARSVNP--FR-----LIGVGLTVWTLAVVGCGFS---------FSFWMIAICRMLVGV  166 (276)
Q Consensus       103 ~~~~~~~~~~~~~i~~~~~g~l~d~~gr--r~-----~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~r~l~G~  166 (276)
                      .+|+.+++.+..++.+|+.+++=.|.++  |.     =+.+|+++.+++++++.++         .+.+++++..+++++
T Consensus       310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~  389 (493)
T PRK15462        310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGF  389 (493)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence            5788899999999889888888666532  21     1567888888887665432         266778899999999


Q ss_pred             hhhhhhhcHHHHHhhcCcchhhhHHHHHHHHH-hhhhhhHHHHHHHhhc-c------------cchhHHHHHhHHHHHHH
Q 023846          167 GEASFISLAAPFIDDNAPVAKKTAWLGVFYMC-LPSGYAIGYVYGGWVG-H------------YNWRYAFWGEAILMFPF  232 (276)
Q Consensus       167 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~~g~~~~~~l~-~------------~~w~~~~~~~~~~~~~~  232 (276)
                      |.-...|+..+.+++..|++.||+.+|.+... ..+|..++..+++... .            ..+...|...++..+++
T Consensus       390 gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  469 (493)
T PRK15462        390 AELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC  469 (493)
T ss_pred             HHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999764 3577777666655553 1            13556777777777666


Q ss_pred             -HHHHHhh
Q 023846          233 -AVLGFVM  239 (276)
Q Consensus       233 -~~~~~~~  239 (276)
                       .++.+.+
T Consensus       470 ~~~~~~~~  477 (493)
T PRK15462        470 VGVVLMIW  477 (493)
T ss_pred             HHHHHHHH
Confidence             5555444

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.32  E-value=5.4e-06  Score=71.57  Aligned_cols=125  Identities=14%  Similarity=0.200  Sum_probs=99.6

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhc----cCChhhHHHH-HHHHHHHHHHHhhhhhH----------
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARS----VNPFRLIGVG-LTVWTLAVVGCGFSFSF----------  154 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~grr~~~~~~-~~~~~~~~~~~~~~~~~----------  154 (276)
                      +.+..+.|++.+..+.+....-+...+.+++.|..+||    |||||.+++. .+..+++.++.+++.++          
T Consensus        56 tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~  135 (498)
T KOG0637|consen   56 TPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERK  135 (498)
T ss_pred             cHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCccc
Confidence            46677899999999998888888889999999999995    7988877655 45556677777776532          


Q ss_pred             -------HHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhH-HHHHHHHHhhhhhhHHHHHHHhhc
Q 023846          155 -------WMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTA-WLGVFYMCLPSGYAIGYVYGGWVG  214 (276)
Q Consensus       155 -------~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~g~~~g~~~~~~l~  214 (276)
                             .+++++.-+.=++.-.....+-+++.|.+..+++.+ +.+.+..+..+|+++|..++++..
T Consensus       136 ~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~~  203 (498)
T KOG0637|consen  136 PVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYLG  203 (498)
T ss_pred             ccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccccC
Confidence                   345555566666776788888999999998777666 999999999999999999988664

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.30  E-value=7.6e-06  Score=69.17  Aligned_cols=136  Identities=15%  Similarity=0.149  Sum_probs=115.3

Q ss_pred             ccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccC--ChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhh
Q 023846           93 QGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVN--PFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEAS  170 (276)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~  170 (276)
                      ...||.++.|.|.+.+...+...+.+....+..+|..  -+-.+...+.++.-..++.+.+.....+.++..+-.+..+.
T Consensus       289 ~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~  368 (451)
T KOG2615|consen  289 HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTAS  368 (451)
T ss_pred             cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHH
Confidence            4789999999999999999999999999899999887  67777777777777777888888888889999999998888


Q ss_pred             hhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc--ccchhHHHHHhHHH
Q 023846          171 FISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG--HYNWRYAFWGEAIL  228 (276)
Q Consensus       171 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~--~~~w~~~~~~~~~~  228 (276)
                      ..+....++....|.++||.+.|+......++-++||+++|.+.  ..+-+.++...+.+
T Consensus       369 ~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~~~~L  428 (451)
T KOG2615|consen  369 VVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIAWGAL  428 (451)
T ss_pred             hhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeeehHHH
Confidence            88888999999999999999999999999999999999998876  33444444444443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=98.17  E-value=1.6e-05  Score=68.87  Aligned_cols=108  Identities=20%  Similarity=0.252  Sum_probs=87.1

Q ss_pred             hhHHHHHHHHHHHHHHHhhhh---------hHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcch---hhhHHHHHHHHHh
Q 023846          132 RLIGVGLTVWTLAVVGCGFSF---------SFWMIAICRMLVGVGEASFISLAAPFIDDNAPVA---KKTAWLGVFYMCL  199 (276)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~  199 (276)
                      +++.++.++..+|.++..++.         +.+.++++..+.++|.|+.-+...++.+|.++++   +|.+.+.++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            467788888888888744442         2367889999999999999999999999999865   5778889999999


Q ss_pred             hhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhh
Q 023846          200 PSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVM  239 (276)
Q Consensus       200 ~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~  239 (276)
                      ++|..+++.+.+++. +.+|.+.|.+.++..++..+..+..
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence            999999999999999 9999999999988776665554443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PTZ00207 hypothetical protein; Provisional

Probab=98.15  E-value=3e-05  Score=70.66  Aligned_cols=149  Identities=7%  Similarity=-0.134  Sum_probs=106.4

Q ss_pred             ccccccc-CCCc-hhHHH-HHHHHHHHHHHHHhHHHHhhhc---------cCChhhHHHHHHHHHHHHHHHhhhhhHHHH
Q 023846           90 TGIQGDF-DLNN-FQDGV-LSSAFMVGLLVASPIFASLARS---------VNPFRLIGVGLTVWTLAVVGCGFSFSFWMI  157 (276)
Q Consensus        90 ~~~~~~~-~~~~-~~~~~-~~~~~~~~~~i~~~~~g~l~d~---------~grr~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (276)
                      .+|.+.+ |.+. .+... +.+++.++.++|.+..|.+...         +.|--.+.+..+ +.++.+++.+.-....+
T Consensus       377 ~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L  455 (591)
T PTZ00207        377 RFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAAL  455 (591)
T ss_pred             HHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHh
Confidence            4677777 5522 22222 7888889999999988887721         222223334444 55555655555444689


Q ss_pred             HHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHH-HHHHHhhc--c------------cchhHHH
Q 023846          158 AICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIG-YVYGGWVG--H------------YNWRYAF  222 (276)
Q Consensus       158 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g-~~~~~~l~--~------------~~w~~~~  222 (276)
                      .+.-++.|++.|..+++....++|+|. |+-|+-..+......+|..+- -.+.|.+.  +            .-++.+|
T Consensus       456 ~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~  534 (591)
T PTZ00207        456 PLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPL  534 (591)
T ss_pred             HHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHH
Confidence            999999999999999999999999999 999999888888888888774 34445443  1            1278899


Q ss_pred             HHhHHHHHHHHHHHHhhc
Q 023846          223 WGEAILMFPFAVLGFVMK  240 (276)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~  240 (276)
                      ++.+.+++...+....+.
T Consensus       535 ~v~~~~~~~g~~~s~~l~  552 (591)
T PTZ00207        535 AFLLGLSFLAFITSTYVH  552 (591)
T ss_pred             HHHHHHHHHHHHHHhhee
Confidence            999998888887766653

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.13  E-value=4.7e-05  Score=65.80  Aligned_cols=117  Identities=11%  Similarity=0.116  Sum_probs=87.2

Q ss_pred             cCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHH---HHhhhhhHHHHHHHHHHHHhhhhhhh
Q 023846           96 FDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVV---GCGFSFSFWMIAICRMLVGVGEASFI  172 (276)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~r~l~G~~~~~~~  172 (276)
                      +.-...+..+....|.+|.+++.--...+  |+.+-+++.+...+..+..+   ..-+.++.|..++.-+..|+..|..+
T Consensus       276 ~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~Y  353 (402)
T PF02487_consen  276 FFSPRDQYRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASY  353 (402)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHH
Confidence            44445677888889999888876543322  44343443333333333333   33345788999999999999999999


Q ss_pred             hcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc
Q 023846          173 SLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG  214 (276)
Q Consensus       173 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  214 (276)
                      ......+.|-.|+++|-.++|....+-++|..++.+++-.+.
T Consensus       354 VNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  354 VNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999888876654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.10  E-value=0.00071  Score=60.14  Aligned_cols=125  Identities=10%  Similarity=0.085  Sum_probs=93.6

Q ss_pred             cccccccCC-----CchhHHHHHHHHHHHHHHH-HhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhh----h-------
Q 023846           90 TGIQGDFDL-----NNFQDGVLSSAFMVGLLVA-SPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFS----F-------  152 (276)
Q Consensus        90 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~-~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~----~-------  152 (276)
                      ..+++.+.+     +.+...++-+...+...+. .++.+++++|++|++++-+....+.+...++++.    +       
T Consensus        27 R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~  106 (472)
T TIGR00769        27 RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTA  106 (472)
T ss_pred             HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcH
Confidence            466666655     3356788888777776666 8999999999999999988877777766665554    0       


Q ss_pred             --------------------hHHHHHHHHHHHHhhhhhhhh-cHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHH
Q 023846          153 --------------------SFWMIAICRMLVGVGEASFIS-LAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGG  211 (276)
Q Consensus       153 --------------------~~~~~~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  211 (276)
                                          +.|...+..+...+-.....+ .-..+++|.++.++-.|..++++.+.++|.++++.+..
T Consensus       107 ~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~  186 (472)
T TIGR00769       107 LADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIK  186 (472)
T ss_pred             HHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                123333444455555455554 67889999999999999999999999999999998877


Q ss_pred             hhc
Q 023846          212 WVG  214 (276)
Q Consensus       212 ~l~  214 (276)
                      ++.
T Consensus       187 ~~~  189 (472)
T TIGR00769       187 YFS  189 (472)
T ss_pred             HHH
Confidence            765

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.04  E-value=2.5e-05  Score=51.26  Aligned_cols=53  Identities=21%  Similarity=0.166  Sum_probs=46.3

Q ss_pred             ccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHH
Q 023846           89 GTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVW  141 (276)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~  141 (276)
                      ++...++.|+++.++|.+.++..+...++++++|.++||+++++.+.....+.
T Consensus        23 l~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   23 LPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             hhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            35666789999999999999999999999999999999999988877765543

>PRK03612 spermidine synthase; Provisional

Probab=97.98  E-value=0.00076  Score=61.01  Aligned_cols=141  Identities=11%  Similarity=-0.051  Sum_probs=82.3

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHH---H-HHH---hhhhhH-HHHHHHHH
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLA---V-VGC---GFSFSF-WMIAICRM  162 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~---~-~~~---~~~~~~-~~~~~~r~  162 (276)
                      .+.--+|-+..+.+.+.+++.+|..+|+.+.+++.++.-++.. .+.+.+..++   . ++.   ...... ..++...+
T Consensus        40 ~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~  118 (521)
T PRK03612         40 LASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVL  118 (521)
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344567788888999999999999999999888744322222 1111111111   1 111   111111 12233445


Q ss_pred             HHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc--ccchhHHHHHhHHHHHHHH
Q 023846          163 LVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG--HYNWRYAFWGEAILMFPFA  233 (276)
Q Consensus       163 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~--~~~w~~~~~~~~~~~~~~~  233 (276)
                      +.|+..|...|....+..+... ++-+...|-.+....+|.++|.++.+++.  ..|-..+.++.+.+.+++.
T Consensus       119 ~~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a  190 (521)
T PRK03612        119 LIGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA  190 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            6778888887777666654322 23456678888888888888888877776  4564444444444443333

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.84  E-value=0.00053  Score=60.30  Aligned_cols=141  Identities=17%  Similarity=0.247  Sum_probs=107.9

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHhhhccCCh-------hhHHHHHHHHHHHHHHHhhh----------hhHHHHHHHHHHH
Q 023846          102 QDGVLSSAFMVGLLVASPIFASLARSVNPF-------RLIGVGLTVWTLAVVGCGFS----------FSFWMIAICRMLV  164 (276)
Q Consensus       102 ~~~~~~~~~~~~~~i~~~~~g~l~d~~grr-------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~r~l~  164 (276)
                      ..++..+.+.+..++.+++..++..+.+++       .=+-+++.+...+.++....          .+.++++...+++
T Consensus       325 p~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~  404 (498)
T COG3104         325 PPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQ  404 (498)
T ss_pred             CHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHH
Confidence            358889999999999999998888885544       12445666666666554443          2678899999999


Q ss_pred             HhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHh-------hcccchhHHHHHhHHHHHHHHHHHH
Q 023846          165 GVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGW-------VGHYNWRYAFWGEAILMFPFAVLGF  237 (276)
Q Consensus       165 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~-------l~~~~w~~~~~~~~~~~~~~~~~~~  237 (276)
                      ++|.=...|+..+++....|++-.+..++++......|+.++..+.+.       .....-...|+..+...++..+..+
T Consensus       405 s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~  484 (498)
T COG3104         405 SFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLL  484 (498)
T ss_pred             HHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988888887777662       2244556677777777776666655


Q ss_pred             hhccc
Q 023846          238 VMKPL  242 (276)
Q Consensus       238 ~~~~~  242 (276)
                      ...|+
T Consensus       485 ~~~~~  489 (498)
T COG3104         485 LLSPK  489 (498)
T ss_pred             HhhHH
Confidence            55443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.82  E-value=0.0007  Score=58.64  Aligned_cols=135  Identities=14%  Similarity=0.045  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhc
Q 023846          103 DGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDN  182 (276)
Q Consensus       103 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~  182 (276)
                      .+.+.-+-.+...+..+.+.++.+|+.-+.=..++.++.+++.++.+++++.+.-+++-++.+++.|........+.. .
T Consensus        61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~  139 (402)
T PF02487_consen   61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-F  139 (402)
T ss_pred             chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-h
Confidence            344555555666777777888899887666667777788889999999999999999999999999988887777654 5


Q ss_pred             CcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc--ccchhHHHHHhHHHHHHHHHHHHhhccc
Q 023846          183 APVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG--HYNWRYAFWGEAILMFPFAVLGFVMKPL  242 (276)
Q Consensus       183 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~  242 (276)
                      +++    ...+-+..+.+.++++|+..-..+.  ....|.++++...+.++..+..++..|.
T Consensus       140 y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~  197 (402)
T PF02487_consen  140 YGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPS  197 (402)
T ss_pred             cCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            553    3567788888888888887655554  4456778888776655554444444443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.81  E-value=5.5e-05  Score=61.22  Aligned_cols=92  Identities=16%  Similarity=0.160  Sum_probs=72.1

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhh
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEAS  170 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~  170 (276)
                      ++-+.+|+...++|.+.....-..++...+.|-++||-|||+.-+.-++...++++ .-.++.+-.++++|++.|+..+.
T Consensus        62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsL  140 (454)
T KOG4332|consen   62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSL  140 (454)
T ss_pred             eeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHH
Confidence            66778899999999887777777788888999999999999976554444444322 33456888999999999999999


Q ss_pred             hhhcHHHH-HhhcC
Q 023846          171 FISLAAPF-IDDNA  183 (276)
Q Consensus       171 ~~~~~~~~-i~~~~  183 (276)
                      .+..--++ +.|..
T Consensus       141 LFSaFEsWliaEHn  154 (454)
T KOG4332|consen  141 LFSAFESWLIAEHN  154 (454)
T ss_pred             HHHHHHHHHHHHhh
Confidence            98888776 56665

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.75  E-value=0.00034  Score=63.70  Aligned_cols=150  Identities=15%  Similarity=0.129  Sum_probs=117.7

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhc-cCChhhHHHHHHHHHHHHHHHhhhh----------------
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARS-VNPFRLIGVGLTVWTLAVVGCGFSF----------------  152 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~----------------  152 (276)
                      .++.++++.+...+.-....+.-......+..++++|- +||-+++.++.++..++.++..+..                
T Consensus        62 ~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~  141 (571)
T KOG1237|consen   62 TYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGG  141 (571)
T ss_pred             HHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCC
Confidence            57888888888778888888888888899999999996 5899999999888887765443321                


Q ss_pred             ---------hHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCc---ch-h--hhHHHHHHHHHhhhhhhHHHHHHHhhc-cc
Q 023846          153 ---------SFWMIAICRMLVGVGEASFISLAAPFIDDNAP---VA-K--KTAWLGVFYMCLPSGYAIGYVYGGWVG-HY  216 (276)
Q Consensus       153 ---------~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~-~--r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~  216 (276)
                               ....+..+.-+..+|.|+.-+...++-+|-++   ++ +  +...+.++....++|..++..+.-++. +.
T Consensus       142 ~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~  221 (571)
T KOG1237|consen  142 NVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNV  221 (571)
T ss_pred             CcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcc
Confidence                     12355566677778999999999999999998   32 2  237788899999999999998888887 89


Q ss_pred             chhHHHHHhHHHHHHHHHHHHhh
Q 023846          217 NWRYAFWGEAILMFPFAVLGFVM  239 (276)
Q Consensus       217 ~w~~~~~~~~~~~~~~~~~~~~~  239 (276)
                      +|.+.|.+..+..++..++.+..
T Consensus       222 ~w~lgf~i~~~~~~lai~iF~~g  244 (571)
T KOG1237|consen  222 GWKLGFGIPTVLNALAILIFLPG  244 (571)
T ss_pred             cceeeccHHHHHHHHHHHHHHcC
Confidence            99999999888776665554443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.73  E-value=0.00083  Score=59.51  Aligned_cols=117  Identities=13%  Similarity=0.016  Sum_probs=91.2

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhh-h---------hhHHHHHHHHHHHHhh
Q 023846           98 LNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGF-S---------FSFWMIAICRMLVGVG  167 (276)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~r~l~G~~  167 (276)
                      +++...+.+..+..++..++..+..++..+..-|+++.+..++.++..+.-.. .         ++.+..+..-++..+.
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~  331 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI  331 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence            78888899988888889999999988888888899988888777765543221 1         1122233344566666


Q ss_pred             hhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc
Q 023846          168 EASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG  214 (276)
Q Consensus       168 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  214 (276)
                      .+..+-....++++.+|+..-|+.+++.....++|..++..++..+.
T Consensus       332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~  378 (433)
T PF03092_consen  332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLM  378 (433)
T ss_pred             HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66777777888999999999999999999999999999988888776

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.73  E-value=0.0005  Score=59.24  Aligned_cols=145  Identities=12%  Similarity=0.032  Sum_probs=107.4

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhH-HHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHhhhhhhhhcH
Q 023846          100 NFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLI-GVGLTVWTLAVVGCGFSFS---FWMIAICRMLVGVGEASFISLA  175 (276)
Q Consensus       100 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~r~l~G~~~~~~~~~~  175 (276)
                      .+..+...++..+..++.+|+.|.++|+.|+|+.. -....+..++.++..+.++   ++..++..++..++........
T Consensus        57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy  136 (438)
T COG2270          57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY  136 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence            34568888899999999999999999999966654 4555555666666666654   4455566778888888888999


Q ss_pred             HHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHH--Hhhc-----------------ccchhHHHHHhHHHHHHHHHHH
Q 023846          176 APFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYG--GWVG-----------------HYNWRYAFWGEAILMFPFAVLG  236 (276)
Q Consensus       176 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~--~~l~-----------------~~~w~~~~~~~~~~~~~~~~~~  236 (276)
                      .+++.+..++++.++..++-.....+|+.+.-++.  ..+.                 ...-|.++.+.++.-++..+-.
T Consensus       137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm  216 (438)
T COG2270         137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPM  216 (438)
T ss_pred             hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHH
Confidence            99999999999988888888877788877655442  1111                 1346888888888887777777


Q ss_pred             Hhhccccc
Q 023846          237 FVMKPLQL  244 (276)
Q Consensus       237 ~~~~~~~~  244 (276)
                      ++..++.+
T Consensus       217 ~~~v~~~~  224 (438)
T COG2270         217 ILNVHDAE  224 (438)
T ss_pred             Hhcccccc
Confidence            76655544

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.42  E-value=0.00092  Score=58.93  Aligned_cols=106  Identities=15%  Similarity=0.170  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcch
Q 023846          107 SSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVA  186 (276)
Q Consensus       107 ~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~  186 (276)
                      .++......+++++.+.+.|+.|+|+.++++..+.....+..-+ .|-+.+++...+.|+|.+..+.....+++|+.+++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            77777888899999999999999999999999999887766554 45777889999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHhhhhhhHHHHHHHhh
Q 023846          187 KKTAWLGVFYMCLPSGYAIGYVYGGWV  213 (276)
Q Consensus       187 ~r~~~~~~~~~~~~~g~~~g~~~~~~l  213 (276)
                      .+.+..++.......+.++|..+...+
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~l~~~  161 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGIILFIY  161 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHhheee
Confidence            999999999998888888886654443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.34  E-value=0.00074  Score=58.64  Aligned_cols=151  Identities=9%  Similarity=-0.059  Sum_probs=95.9

Q ss_pred             ccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCC-hhhHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHhhhh
Q 023846           95 DFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNP-FRLIGVGLTVWTLAVVGCGFS----FSFWMIAICRMLVGVGEA  169 (276)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~r~l~G~~~~  169 (276)
                      .-|.+....|++.....++.++++...|.+.||... |.++.+......++.+.....    ...+.++..-.+.|++..
T Consensus       295 ~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~  374 (480)
T KOG2563|consen  295 PSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGT  374 (480)
T ss_pred             cccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhc
Confidence            344555778999999999999999999999999764 555555555555553222211    134455666778888888


Q ss_pred             hhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccc---hhH-HHHHhHHHHHHHHHHHHhhccccc
Q 023846          170 SFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYN---WRY-AFWGEAILMFPFAVLGFVMKPLQL  244 (276)
Q Consensus       170 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~---w~~-~~~~~~~~~~~~~~~~~~~~~~~~  244 (276)
                      ..+|+...+-.|..-|..-+...|+.+...++=.++-..+-+... ..+   |.+ .-+.......+..++..+++|+..
T Consensus       375 ~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~  454 (480)
T KOG2563|consen  375 GYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYR  454 (480)
T ss_pred             CCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHH
Confidence            888988888877665555556667776665555555555555555 333   333 333334444455555556666544


Q ss_pred             C
Q 023846          245 K  245 (276)
Q Consensus       245 ~  245 (276)
                      +
T Consensus       455 R  455 (480)
T KOG2563|consen  455 R  455 (480)
T ss_pred             h
Confidence            3

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.32  E-value=0.0017  Score=57.12  Aligned_cols=124  Identities=15%  Similarity=0.015  Sum_probs=92.8

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHh------hhh----hHHHHHHH
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCG------FSF----SFWMIAIC  160 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~  160 (276)
                      .+...-|+++..+|.+-+.-.+..+.+.+...++.+|+|..+.=.++...-.+...++.      -.+    +...++.+
T Consensus       283 ~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~g  362 (432)
T PF06963_consen  283 AYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGG  362 (432)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHH
Confidence            33444599999999999999999999999999999999998887777665433332222      111    34455555


Q ss_pred             HHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc
Q 023846          161 RMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG  214 (276)
Q Consensus       161 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  214 (276)
                      -++.=+|.=.+-....-++.|..|+++||...|.-....++-..+...++-.+.
T Consensus       363 i~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~  416 (432)
T PF06963_consen  363 IALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFP  416 (432)
T ss_pred             HHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            566666666777778888999999999999999999988888777766654443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.20  E-value=0.033  Score=49.33  Aligned_cols=106  Identities=14%  Similarity=0.257  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHhHHHHhhh---ccCChhhHHHHHHHHHHHHHHHhhh------------------hhHHHHHHHHHHHH
Q 023846          107 SSAFMVGLLVASPIFASLAR---SVNPFRLIGVGLTVWTLAVVGCGFS------------------FSFWMIAICRMLVG  165 (276)
Q Consensus       107 ~~~~~~~~~i~~~~~g~l~d---~~grr~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~r~l~G  165 (276)
                      .-...++..+++.+.+.+.+   ++||++.+.++..+..+..++.-..                  +++....+.-++.|
T Consensus       285 ~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G  364 (461)
T KOG3098|consen  285 SIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLG  364 (461)
T ss_pred             HHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHh
Confidence            33444555666667777765   5799999999998888877765442                  24667778889999


Q ss_pred             hhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhh
Q 023846          166 VGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWV  213 (276)
Q Consensus       166 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  213 (276)
                      ++-+........+++..+ +++|..+.+++..-..++..++-......
T Consensus       365 ~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~  411 (461)
T KOG3098|consen  365 FGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL  411 (461)
T ss_pred             hHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            999999999999999999 58888888888877777776655444433

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.10  E-value=0.00012  Score=66.46  Aligned_cols=125  Identities=13%  Similarity=0.123  Sum_probs=0.0

Q ss_pred             cccccccCCCchhHHHHHHHHHH-HHHHHHhHHHHhhhccC--ChhhHHHHHHHHHHHHHHHh---h--------h----
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMV-GLLVASPIFASLARSVN--PFRLIGVGLTVWTLAVVGCG---F--------S----  151 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~g--rr~~~~~~~~~~~~~~~~~~---~--------~----  151 (276)
                      .+++.+|++++++++++.++..+ +.++|.+++|++..|+.  .|..+.+..++..+..++..   +        +    
T Consensus       330 KylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~  409 (539)
T PF03137_consen  330 KYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTV  409 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecC
Confidence            57888999999999998876666 56789999999999874  45554444433333332200   0        0    


Q ss_pred             ---------------------------------------hhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHH
Q 023846          152 ---------------------------------------FSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWL  192 (276)
Q Consensus       152 ---------------------------------------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~  192 (276)
                                                             +.+..+++..++.-+..+.........+-+..|+++|+.++
T Consensus       410 ~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~Al  489 (539)
T PF03137_consen  410 PYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFAL  489 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcchhh
Confidence                                                   01234444444444444555555556667888999999999


Q ss_pred             HHHHHHhhh-hhhHHHHHHHhhc
Q 023846          193 GVFYMCLPS-GYAIGYVYGGWVG  214 (276)
Q Consensus       193 ~~~~~~~~~-g~~~g~~~~~~l~  214 (276)
                      |+......+ |.+-||++-|.+.
T Consensus       490 Gv~~~~~rllg~IPgPIifG~ii  512 (539)
T PF03137_consen  490 GVQWLIIRLLGFIPGPIIFGAII  512 (539)
T ss_dssp             -----------------------
T ss_pred             hHHHHHHHhhcCcchHHHHhHHH
Confidence            988766654 6666999888776

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.01  E-value=0.002  Score=56.22  Aligned_cols=129  Identities=9%  Similarity=0.001  Sum_probs=75.9

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccC----ChhhHHHHHHHH------HHHHHHHh--hhhhHHHHH
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVN----PFRLIGVGLTVW------TLAVVGCG--FSFSFWMIA  158 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g----rr~~~~~~~~~~------~~~~~~~~--~~~~~~~~~  158 (276)
                      +..+-.|.+..+..++..+...+..+|.+++|.++||+-    +-.......+..      .+..+.+.  +..+...+.
T Consensus       273 ~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~  352 (493)
T KOG1330|consen  273 YSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFG  352 (493)
T ss_pred             HHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHH
Confidence            333344556666677788888899999999999999942    211111111111      11111111  122333334


Q ss_pred             HHHHHHHhhhhh-hhhcHHHHHhhcCcchhhhHHHHHHHHHhhh-hhhHHHHHHHhhc--ccchh
Q 023846          159 ICRMLVGVGEAS-FISLAAPFIDDNAPVAKKTAWLGVFYMCLPS-GYAIGYVYGGWVG--HYNWR  219 (276)
Q Consensus       159 ~~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~--~~~w~  219 (276)
                      +..++.|+.... .++...-+..+..|+++|..+.++-.....+ |-+-+|.+.|.+.  -.||+
T Consensus       353 ~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  353 LILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             HHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence            444555544333 3444555678899999999999988766655 4444666888887  45665

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.89  E-value=0.0016  Score=57.70  Aligned_cols=81  Identities=12%  Similarity=0.066  Sum_probs=61.2

Q ss_pred             HHHHH-HHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHH
Q 023846          156 MIAIC-RMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFA  233 (276)
Q Consensus       156 ~~~~~-r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~  233 (276)
                      .+++. -++.|++.-.......++-++...+++++...++++.....+..+||++...+. ..|.|+.+.+.+...++..
T Consensus       389 ~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~  468 (488)
T KOG2325|consen  389 LYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVA  468 (488)
T ss_pred             hheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHH
Confidence            33444 345666666666667788899999999999999999999999999999988887 7788877776665544444


Q ss_pred             HHH
Q 023846          234 VLG  236 (276)
Q Consensus       234 ~~~  236 (276)
                      .++
T Consensus       469 ~l~  471 (488)
T KOG2325|consen  469 ALW  471 (488)
T ss_pred             HHH
Confidence            433

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.85  E-value=0.044  Score=48.63  Aligned_cols=108  Identities=12%  Similarity=0.048  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHHHhHHHHhhhccCCh-hhHHHHHH---HHHHHHHHHhh---------hhhHHHHHHHHHHHHhhhhh
Q 023846          104 GVLSSAFMVGLLVASPIFASLARSVNPF-RLIGVGLT---VWTLAVVGCGF---------SFSFWMIAICRMLVGVGEAS  170 (276)
Q Consensus       104 ~~~~~~~~~~~~i~~~~~g~l~d~~grr-~~~~~~~~---~~~~~~~~~~~---------~~~~~~~~~~r~l~G~~~~~  170 (276)
                      -.....++++-.+|..+..+.. .-++| +.+.+..+   ++....++|..         .++-+..++..++.|+..|.
T Consensus       310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy  388 (437)
T TIGR00939       310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY  388 (437)
T ss_pred             HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence            4557788888888887655431 11222 12222222   22223333432         24667777889999999999


Q ss_pred             hhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHh
Q 023846          171 FISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGW  212 (276)
Q Consensus       171 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  212 (276)
                      ..+.+..+..+..++++|..+-.+...+..+|..+|..++-.
T Consensus       389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~  430 (437)
T TIGR00939       389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL  430 (437)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999888888888888888888776543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=96.76  E-value=0.0082  Score=55.92  Aligned_cols=125  Identities=8%  Similarity=0.036  Sum_probs=86.5

Q ss_pred             cccccccCCCchhHHHHHHHHHH-HHHHHHhHHHHhhhccC--ChhhHHHHHHHHHHHHHHHh-----------------
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMV-GLLVASPIFASLARSVN--PFRLIGVGLTVWTLAVVGCG-----------------  149 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~g--rr~~~~~~~~~~~~~~~~~~-----------------  149 (276)
                      .++++.+|+++.+++++.+...+ +.+++.++.|++.||++  .|+.+.++.++..++.++..                 
T Consensus       355 ~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~agv~~  434 (633)
T TIGR00805       355 KYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLLCSPLFLIGCESAPVAGVNN  434 (633)
T ss_pred             HHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHHHHHHHeecCCCCccceeec
Confidence            46677899999999999988776 67899999999999998  45666666665555533311                 


Q ss_pred             ----------------------h----------------------------------------------------h----
Q 023846          150 ----------------------F----------------------------------------------------S----  151 (276)
Q Consensus       150 ----------------------~----------------------------------------------------~----  151 (276)
                                            -                                                    .    
T Consensus       435 ~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~~y~~CsCi~~~~~~~a~~g~C~~~C  514 (633)
T TIGR00805       435 PSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNMVYTNCSCVQTPGNSSAKKGLCNPPC  514 (633)
T ss_pred             cCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcceecccccccCCCCCCCcCCCCCccc
Confidence                                  0                                                    0    


Q ss_pred             hh-HHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhh-hhhHHHHHHHhhc
Q 023846          152 FS-FWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPS-GYAIGYVYGGWVG  214 (276)
Q Consensus       152 ~~-~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~  214 (276)
                      ++ +..+++..++..+..+.........+-+..|+++|..++|+..+...+ |.+-+|++-|++.
T Consensus       515 ~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~~i  579 (633)
T TIGR00805       515 ATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGLLI  579 (633)
T ss_pred             chhHHHHHHHHHHHHHHHHhccCchheEEeeccCcccchHHhhHHHHHHHHhcCCChhHHHhhhh
Confidence            01 223334444444444444444555667788999999999988877665 6677999988875

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=96.75  E-value=0.043  Score=47.08  Aligned_cols=143  Identities=13%  Similarity=0.067  Sum_probs=84.4

Q ss_pred             hhhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhh
Q 023846           47 PGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLAR  126 (276)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d  126 (276)
                      .++-+..+.+.+..++......+                  .+|.+.+.-|.|.++.+.+..++.  =...-+++.++.|
T Consensus        29 d~~~illLl~LYllQGiP~GL~~------------------~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVD   88 (510)
T KOG3574|consen   29 DRSSILLLLFLYLLQGIPLGLIG------------------AIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVD   88 (510)
T ss_pred             hhhhHHHHHHHHHHcCCchhHhh------------------hhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhH
Confidence            33445555666777665544443                  237888878888777766543322  1234467788888


Q ss_pred             -----ccCChhhHH------HHHHHHHHHHHH------HhhhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhh
Q 023846          127 -----SVNPFRLIG------VGLTVWTLAVVG------CGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKT  189 (276)
Q Consensus       127 -----~~grr~~~~------~~~~~~~~~~~~------~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~  189 (276)
                           |+|||+.-+      +|.++..++...      -+-.++...+....++.-+..+.--.+.-.+.-.+..+++.|
T Consensus        89 s~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lg  168 (510)
T KOG3574|consen   89 SVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLG  168 (510)
T ss_pred             HHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcC
Confidence                 999988643      333333332211      111223333434445555666666666777777788888888


Q ss_pred             HHHHHHHHHhhhhhhHHHHH
Q 023846          190 AWLGVFYMCLPSGYAIGYVY  209 (276)
Q Consensus       190 ~~~~~~~~~~~~g~~~g~~~  209 (276)
                      .+......+...|.+++..+
T Consensus       169 yaST~q~Vg~~~GyfL~~~i  188 (510)
T KOG3574|consen  169 YASTCQSVGQTAGYFLGNVV  188 (510)
T ss_pred             chhHHHHHHHhhhHHhhcce
Confidence            87777777777777666544

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=96.72  E-value=0.36  Score=43.47  Aligned_cols=117  Identities=9%  Similarity=0.084  Sum_probs=79.8

Q ss_pred             CchhHHHHHHHHHH-HHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhh--h-----------------------
Q 023846           99 NNFQDGVLSSAFMV-GLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFS--F-----------------------  152 (276)
Q Consensus        99 ~~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~--~-----------------------  152 (276)
                      +++.+.++=....+ +.++...+..++++++++.+++-+....+.....+.++.  +                       
T Consensus        56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~  135 (491)
T PF03219_consen   56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK  135 (491)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence            45556666554444 445667889999999999999887777776666655542  0                       


Q ss_pred             ------hHHHHHHHHHHHHhhhhhhhh-cHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhcc
Q 023846          153 ------SFWMIAICRMLVGVGEASFIS-LAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGH  215 (276)
Q Consensus       153 ------~~~~~~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  215 (276)
                            +.|.+.+..++.-+-.....+ .-..+.+|.++.++-.+..++++.+.++|.+++..+..++..
T Consensus       136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  122333333333333333333 457889999999999999999999999999998776666553

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=96.64  E-value=0.35  Score=42.97  Aligned_cols=124  Identities=9%  Similarity=0.125  Sum_probs=88.1

Q ss_pred             ccccccCC---CchhHHHHHHHHHH-HHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhh---------------
Q 023846           91 GIQGDFDL---NNFQDGVLSSAFMV-GLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFS---------------  151 (276)
Q Consensus        91 ~~~~~~~~---~~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~---------------  151 (276)
                      .+.+.+.+   ++..+.++-+..-+ +.++..++.+++.+++.+.+++-+-+..+....+++++.               
T Consensus        48 ~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~  127 (509)
T COG3202          48 SLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFS  127 (509)
T ss_pred             HhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHH
Confidence            44444433   45566777777777 677888999999999999999888777777777666653               


Q ss_pred             h-----------------hHHHHHHHHHHHHhhhhhhhh-cHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhh
Q 023846          152 F-----------------SFWMIAICRMLVGVGEASFIS-LAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWV  213 (276)
Q Consensus       152 ~-----------------~~~~~~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  213 (276)
                      .                 +.|...+..++.=+-...... .-....+|.+..++-.|..++++.+.+++..++..+..++
T Consensus       128 ~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~  207 (509)
T COG3202         128 RDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWL  207 (509)
T ss_pred             HHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            0                 113333333333333333333 4567789999999999999999999999999988777777


Q ss_pred             c
Q 023846          214 G  214 (276)
Q Consensus       214 ~  214 (276)
                      .
T Consensus       208 ~  208 (509)
T COG3202         208 S  208 (509)
T ss_pred             h
Confidence            6

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.49  E-value=0.0029  Score=56.30  Aligned_cols=65  Identities=18%  Similarity=0.107  Sum_probs=52.6

Q ss_pred             CCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHH-HHHHHHHHhhh
Q 023846           87 TPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTV-WTLAVVGCGFS  151 (276)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~-~~~~~~~~~~~  151 (276)
                      |.++.+.+++|+++.++|.+.+.--+..+++.|++|+++||+.+|+.++++.++ .....++..+.
T Consensus        32 pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv   97 (618)
T KOG3762|consen   32 PLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFV   97 (618)
T ss_pred             hHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeec
Confidence            355678889999999999999999999999999999999999877766665544 44555555554

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.39  E-value=0.017  Score=53.70  Aligned_cols=125  Identities=13%  Similarity=0.032  Sum_probs=85.0

Q ss_pred             cccccccCCCchhHHHHHHHHHHH-HHHHHhHHHHhhhcc--CChhhHHHHHHHHHHHHHH---Hhh-------------
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVG-LLVASPIFASLARSV--NPFRLIGVGLTVWTLAVVG---CGF-------------  150 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~g~l~d~~--grr~~~~~~~~~~~~~~~~---~~~-------------  150 (276)
                      .+++.+||.+.+.+..+.+...+. .++|..++|++..|+  ..|....+.+++..+..+.   ..+             
T Consensus       417 KyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~igC~~~~~aG~~~  496 (735)
T KOG3626|consen  417 KYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFFIGCESSPVAGVTN  496 (735)
T ss_pred             HHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHEecCCCCcccceec
Confidence            577889999999999988666555 578889999999986  4455555544444443333   111             


Q ss_pred             ------------------------------------------------------------------hh------------
Q 023846          151 ------------------------------------------------------------------SF------------  152 (276)
Q Consensus       151 ------------------------------------------------------------------~~------------  152 (276)
                                                                                        .+            
T Consensus       497 ~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~~~~~~~~~a~~G  576 (735)
T KOG3626|consen  497 SYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCVPTNKNGNGSAKKG  576 (735)
T ss_pred             CCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeeccccccccccCCCceeecC
Confidence                                                                              00            


Q ss_pred             --------hHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhh-hhhHHHHHHHhhc
Q 023846          153 --------SFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPS-GYAIGYVYGGWVG  214 (276)
Q Consensus       153 --------~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~  214 (276)
                              .+..|++..++.-+..+...+....++-+..++++|..++|+..+..++ |.+-+|++-|++.
T Consensus       577 ~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~I  647 (735)
T KOG3626|consen  577 YCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVI  647 (735)
T ss_pred             CCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhH
Confidence                    1224444444544554555566667778899999999999988777665 6666999988874

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.10  E-value=0.49  Score=41.88  Aligned_cols=135  Identities=14%  Similarity=0.081  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHh------hhh------hHHHH---HHHHHHHHhhh
Q 023846          104 GVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCG------FSF------SFWMI---AICRMLVGVGE  168 (276)
Q Consensus       104 ~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~------~~~------~~~~~---~~~r~l~G~~~  168 (276)
                      +...-.-.+..++.++..|.+.||..|.+++..+.++--++..+.+      +..      +-+..   ++.-.+.|...
T Consensus        41 siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~  120 (432)
T PF06963_consen   41 SIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIE  120 (432)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHH
Confidence            3334444556778889999999999999987776655433222111      111      01222   22222222221


Q ss_pred             hhhhhcHHHHH--hhc----C--cchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhh
Q 023846          169 ASFISLAAPFI--DDN----A--PVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVM  239 (276)
Q Consensus       169 ~~~~~~~~~~i--~~~----~--~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~  239 (276)
                      -.. ..+....  -||    .  ++..+.+..+...-.=.+..+++|++.|.+. ..+.+....+.++..++..++=+++
T Consensus       121 ~La-s~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~  199 (432)
T PF06963_consen  121 RLA-SIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFL  199 (432)
T ss_pred             HHH-HhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            111 1112211  222    2  3455666666666666778899999999998 6889988888888887777665554

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=94.96  E-value=0.42  Score=41.59  Aligned_cols=108  Identities=20%  Similarity=0.112  Sum_probs=73.7

Q ss_pred             HHHHHHH-HHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHH-H------hhhhhHHHHHHHHHHHHhhhhhhhhc
Q 023846          103 DGVLSSA-FMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVG-C------GFSFSFWMIAICRMLVGVGEASFISL  174 (276)
Q Consensus       103 ~~~~~~~-~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~r~l~G~~~~~~~~~  174 (276)
                      .-++... +++.-.+|.+.+.++-+.-.|+......+=...+-.+. |      .+..+-+.+++...+.|+..|-....
T Consensus       284 ~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYltsl  363 (406)
T KOG1479|consen  284 ALLLVFLSFNVFDLIGSILAALLTWPDPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTSL  363 (406)
T ss_pred             HHHHHHHHhHHHHHhhhhhhhcccCCCCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhhh
Confidence            3445556 88888888777777655543333332222222332232 2      22457788899999999999999999


Q ss_pred             HHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHH
Q 023846          175 AAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYG  210 (276)
Q Consensus       175 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  210 (276)
                      ...+..+-.|++++-.+-.+...+...|.+.|..++
T Consensus       364 ~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s  399 (406)
T KOG1479|consen  364 IMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS  399 (406)
T ss_pred             eehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            999999999988887777777777777777666553

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=94.92  E-value=0.0081  Score=50.75  Aligned_cols=106  Identities=18%  Similarity=0.128  Sum_probs=3.8

Q ss_pred             HHHHHHHHHHHHHhHHHHhhhc-cCChhhHHHHH--HHHHHHHHHHh----------hhhhHHHHHHHHHHHHhhhhhhh
Q 023846          106 LSSAFMVGLLVASPIFASLARS-VNPFRLIGVGL--TVWTLAVVGCG----------FSFSFWMIAICRMLVGVGEASFI  172 (276)
Q Consensus       106 ~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~--~~~~~~~~~~~----------~~~~~~~~~~~r~l~G~~~~~~~  172 (276)
                      ....++++-.+|..+.++..-+ -.+|++++...  +++....++|.          ..++-+.+++..++.|+..|...
T Consensus       187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~  266 (309)
T PF01733_consen  187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS  266 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence            4667888888999887764211 13444443211  12222222331          23355777888999999999999


Q ss_pred             hcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHH
Q 023846          173 SLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGG  211 (276)
Q Consensus       173 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  211 (276)
                      +.+..+..+..++++|..+-.+...+..+|..+|..++-
T Consensus       267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~  305 (309)
T PF01733_consen  267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSF  305 (309)
T ss_dssp             HHHH-----------------------------------
T ss_pred             hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988888888887788777776643

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=94.77  E-value=0.79  Score=41.04  Aligned_cols=122  Identities=7%  Similarity=-0.012  Sum_probs=62.5

Q ss_pred             ccccccc--cCCCchhHHHHH-HH--HHHHHHHHHhHHHHhhhccCChhhHHHHHH-HHHHHHHHHhhhh----------
Q 023846           89 GTGIQGD--FDLNNFQDGVLS-SA--FMVGLLVASPIFASLARSVNPFRLIGVGLT-VWTLAVVGCGFSF----------  152 (276)
Q Consensus        89 ~~~~~~~--~~~~~~~~~~~~-~~--~~~~~~i~~~~~g~l~d~~grr~~~~~~~~-~~~~~~~~~~~~~----------  152 (276)
                      +|.+.++  .+.+.++.|.+. +.  |.+=..=+.+.=.....|+|||+.-++-.= +.++..+..+..-          
T Consensus        23 iPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~m~~l~~~i~~~~~~~~~~  102 (544)
T PF13000_consen   23 IPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGILMLYLSYNISQWLLFDGVD  102 (544)
T ss_pred             chhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHHHHHHHHHhccchhhcccccc
Confidence            3677777  677877776652 12  222122222333344558999997654432 2222222222111          


Q ss_pred             ------------hH--HHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHH
Q 023846          153 ------------SF--WMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYG  210 (276)
Q Consensus       153 ------------~~--~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  210 (276)
                                  +.  ..+....++.=+-.+.--.++-.+.-.+..+++++.+......+.++|.+++..+-
T Consensus       103 d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvF  174 (544)
T PF13000_consen  103 DALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVF  174 (544)
T ss_pred             hhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHH
Confidence                        11  12222232333333333344555666667778888887777777777777766553

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>TIGR00806 rfc RFC reduced folate carrier

Probab=94.75  E-value=0.9  Score=40.74  Aligned_cols=99  Identities=14%  Similarity=0.059  Sum_probs=77.6

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHhhhccCCh--hhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHHHH
Q 023846          102 QDGVLSSAFMVGLLVASPIFASLARSVNPF--RLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFI  179 (276)
Q Consensus       102 ~~~~~~~~~~~~~~i~~~~~g~l~d~~grr--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i  179 (276)
                      ..|.+-++..+..++.++..|++-.++.+-  ..+.+..++.+...++++..+|+|...++.++.+.......+++..-+
T Consensus       299 yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~i  378 (511)
T TIGR00806       299 YNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQI  378 (511)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457777788888889999999997776442  344444555556667888899999999999999999999999999989


Q ss_pred             hhcCcchhhhHHHHHHHHHhh
Q 023846          180 DDNAPVAKKTAWLGVFYMCLP  200 (276)
Q Consensus       180 ~~~~~~~~r~~~~~~~~~~~~  200 (276)
                      +.....+.-|..+|+.....-
T Consensus       379 A~~L~~~~~aLvFGiNtfvAl  399 (511)
T TIGR00806       379 ASSLSKELCALVFGINTFVAT  399 (511)
T ss_pred             HHHhcccceEEEEecHHHHHH
Confidence            988887777888887766533

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=94.70  E-value=0.79  Score=40.17  Aligned_cols=100  Identities=12%  Similarity=0.085  Sum_probs=75.8

Q ss_pred             CchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhH--HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHH
Q 023846           99 NNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLI--GVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAA  176 (276)
Q Consensus        99 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~  176 (276)
                      ...-.|.+-++..+..+++++..|++..++.+..-+  ....++.+...++++..++.|...++.++.+.......+.+.
T Consensus       283 ~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~  362 (412)
T PF01770_consen  283 ESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIAS  362 (412)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334458888999999999999999997777664433  344445556667888889999999999998888888888888


Q ss_pred             HHHhhcCcchhhhHHHHHHHHH
Q 023846          177 PFIDDNAPVAKKTAWLGVFYMC  198 (276)
Q Consensus       177 ~~i~~~~~~~~r~~~~~~~~~~  198 (276)
                      .-++.....+.-|..+|+....
T Consensus       363 ~qIA~~l~~e~yaLVFGiNtf~  384 (412)
T PF01770_consen  363 FQIAKNLSEERYALVFGINTFV  384 (412)
T ss_pred             HHHHHhccccceeeeeeeHHHH
Confidence            8788877777777777665554

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=94.70  E-value=0.28  Score=41.39  Aligned_cols=73  Identities=8%  Similarity=0.171  Sum_probs=56.0

Q ss_pred             HHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCc
Q 023846          111 MVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAP  184 (276)
Q Consensus       111 ~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~  184 (276)
                      .+..+.++++.+.+++++|-|+++..+........ ..-+-+.+..++-.-...|+|.+..+..--+|+++...
T Consensus        68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyi-A~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~  140 (390)
T KOG3097|consen   68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYI-AANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ  140 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HhhcchhHHhhccHHHhhccccccccccCcceecHHHH
Confidence            34455666777789999999999998887776632 23345688889999999999999998877777766554

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=94.15  E-value=0.14  Score=45.04  Aligned_cols=130  Identities=12%  Similarity=0.024  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcC
Q 023846          104 GVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNA  183 (276)
Q Consensus       104 ~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~  183 (276)
                      .|-..++.+...+.+....++.+|+|-|+.++.+...+.++..+.++.++.+.....+-..|+-.+....+-...++++.
T Consensus       335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~  414 (498)
T KOG0637|consen  335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYA  414 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHH
Confidence            55677888888999999999999999877777777778888888888888888888887777555544444333333322


Q ss_pred             c---------------------c--hhhhHHHHHHHHHhhhhhhHHHHHHHhhc--ccchhHHHHHhHHHHHHHH
Q 023846          184 P---------------------V--AKKTAWLGVFYMCLPSGYAIGYVYGGWVG--HYNWRYAFWGEAILMFPFA  233 (276)
Q Consensus       184 ~---------------------~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~--~~~w~~~~~~~~~~~~~~~  233 (276)
                      -                     .  ..+|...|+.+....+.+++.....|.+.  ..+-+.+-.+.+.+++...
T Consensus       415 ~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~~~  489 (498)
T KOG0637|consen  415 ILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALLIG  489 (498)
T ss_pred             HhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHHHH
Confidence            1                     1  12355666777777777776544444443  3344444444444444433

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=93.85  E-value=4.2  Score=35.59  Aligned_cols=35  Identities=14%  Similarity=0.068  Sum_probs=22.5

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhh
Q 023846          153 SFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKK  188 (276)
Q Consensus       153 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r  188 (276)
                      .+...++.-++.+++.+..+.......++. |++.-
T Consensus       116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~yt  150 (406)
T KOG1479|consen  116 FFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEYT  150 (406)
T ss_pred             hHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHHH
Confidence            455556667778888777777666655544 55544

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=93.67  E-value=0.33  Score=41.38  Aligned_cols=124  Identities=12%  Similarity=-0.021  Sum_probs=93.7

Q ss_pred             cccc-cccCCCchhHH-HHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 023846           90 TGIQ-GDFDLNNFQDG-VLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVG  167 (276)
Q Consensus        90 ~~~~-~~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  167 (276)
                      |++. .+.|++..+.. -+.-...-.+.+.-.+.=.+.|..--|++++.-.+......++..+.++.+.+=+.-++.|..
T Consensus        29 pyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~  108 (433)
T KOG3810|consen   29 PYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPA  108 (433)
T ss_pred             hhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChH
Confidence            4444 45566665542 233333444555556666789999889998888777777788888888988888888888887


Q ss_pred             hhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc
Q 023846          168 EASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG  214 (276)
Q Consensus       168 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  214 (276)
                      .+ ...+-++++-+..+++++-++.+......-.|..+|..++..+.
T Consensus       109 tA-aEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLv  154 (433)
T KOG3810|consen  109 TA-AEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLV  154 (433)
T ss_pred             HH-HHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHh
Confidence            44 44667888999999999999999999988888888888888777

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=93.48  E-value=2.5  Score=37.67  Aligned_cols=51  Identities=8%  Similarity=-0.051  Sum_probs=33.0

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHH
Q 023846          153 SFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYV  208 (276)
Q Consensus       153 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  208 (276)
                      .++..++.-++.|++.+.......++.+ .+|++.    ++.+..+.+++++++.+
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~~----~~a~~~G~g~aGv~~s~  155 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPSTY----SSAVMSGQGLAGVLTSL  155 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHHH----HHHHHhcchhHHHHHHH
Confidence            4666677778889998888877777766 556443    34444555555555443

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=93.08  E-value=3.4  Score=34.27  Aligned_cols=133  Identities=14%  Similarity=0.053  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhccCC--hhhHHHHHHHHHHHHHHHhhh----h---hHHHHHHHHHHHHhhhhhhhh
Q 023846          103 DGVLSSAFMVGLLVASPIFASLARSVNP--FRLIGVGLTVWTLAVVGCGFS----F---SFWMIAICRMLVGVGEASFIS  173 (276)
Q Consensus       103 ~~~~~~~~~~~~~i~~~~~g~l~d~~gr--r~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~r~l~G~~~~~~~~  173 (276)
                      -|.+.+.++++.++|+-+..++..|-..  ...+.+..++.++...+..+.    +   +...-+++..+.-.+.|..+|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            4889999999999999999888765443  344555555544443332221    1   233335566666777889999


Q ss_pred             cHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHH
Q 023846          174 LAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVL  235 (276)
Q Consensus       174 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~  235 (276)
                      ...-+=.++.|.+.|...+.++-.--++-..++-..--.-. ..+-|..|.+..++..+..+.
T Consensus       364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~  426 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASIL  426 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHH
Confidence            99999999999999998888776544432222211100001 345567777766665554443

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=90.79  E-value=0.7  Score=38.79  Aligned_cols=133  Identities=12%  Similarity=-0.034  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcC
Q 023846          104 GVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNA  183 (276)
Q Consensus       104 ~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~  183 (276)
                      |.+.-.-.+-..+..+.+..+.||+.--.=..+..++.+.+.++.+++++.++-+++-.+..++.|.....-..+.+ .+
T Consensus        65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss-~Y  143 (409)
T KOG3880|consen   65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSS-RY  143 (409)
T ss_pred             chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhc-cC
Confidence            44444444555666666777888865444455667778888899999999999999988888887776555444433 33


Q ss_pred             cchhhhHHHHHHHHHhhhhhhHHHHHHHhhc---ccchhHHHHHhHHHHHHHHHHHHhhcc
Q 023846          184 PVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG---HYNWRYAFWGEAILMFPFAVLGFVMKP  241 (276)
Q Consensus       184 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~---~~~w~~~~~~~~~~~~~~~~~~~~~~~  241 (276)
                      ++    ...+-+..+.+.++.+|..--..+.   +...|.+.+++..+-++.+...++..+
T Consensus       144 ~~----~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~  200 (409)
T KOG3880|consen  144 PS----IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLK  200 (409)
T ss_pred             CC----ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeC
Confidence            32    2345555555556666665444444   456788888887766555555555543

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=90.27  E-value=11  Score=32.47  Aligned_cols=85  Identities=12%  Similarity=0.101  Sum_probs=55.9

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHH-------HHHHh--hhhhHHHHHHHHHHHHhh
Q 023846           97 DLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLA-------VVGCG--FSFSFWMIAICRMLVGVG  167 (276)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~-------~~~~~--~~~~~~~~~~~r~l~G~~  167 (276)
                      |-+.-+.+.+.+.|.....+|+...-++.|.--.-+.+..-.++..++       ++.++  ..++-+.+.++-++.|.-
T Consensus        39 G~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~L  118 (508)
T COG4262          39 GGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGVL  118 (508)
T ss_pred             CCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            445667889999999999999988887777532222222222222111       11111  123667788889999999


Q ss_pred             hhhhhhcHHHHHhh
Q 023846          168 EASFISLAAPFIDD  181 (276)
Q Consensus       168 ~~~~~~~~~~~i~~  181 (276)
                      .|.-.|..+.++..
T Consensus       119 VG~EiPL~mrml~~  132 (508)
T COG4262         119 VGAEIPLLMRMLQR  132 (508)
T ss_pred             HhcchHHHHHHHHH
Confidence            99999998888876

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=89.78  E-value=15  Score=33.16  Aligned_cols=71  Identities=15%  Similarity=0.135  Sum_probs=52.4

Q ss_pred             HHHHHhhhhhhhhcHHHHHhhcCc-chhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHH
Q 023846          161 RMLVGVGEASFISLAAPFIDDNAP-VAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFP  231 (276)
Q Consensus       161 r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~  231 (276)
                      -++.|+........--..+.+.+| +++|+..+|-++...++..++..++++.+. ..||.....+.-++.++
T Consensus       273 vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li  345 (472)
T TIGR00769       273 VIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL  345 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            345666666666666777778777 457899999998888888877666667777 88999877776665544

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=89.44  E-value=3.2  Score=35.62  Aligned_cols=95  Identities=17%  Similarity=0.073  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHHHhHHHHhhhccCCh--hhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhh
Q 023846          104 GVLSSAFMVGLLVASPIFASLARSVNPF--RLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDD  181 (276)
Q Consensus       104 ~~~~~~~~~~~~i~~~~~g~l~d~~grr--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~  181 (276)
                      |-.-++..+..+++.+..|++--.+.|.  ..+.++.+.-+...++++-.+++|...++.++.+.-.....+++..-+++
T Consensus       274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~  353 (433)
T KOG3810|consen  274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIAR  353 (433)
T ss_pred             CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHH
Confidence            6666777888889999999997766654  34555556666666788888899999888888887777888888888888


Q ss_pred             cCcchhhhHHHHHHHHH
Q 023846          182 NAPVAKKTAWLGVFYMC  198 (276)
Q Consensus       182 ~~~~~~r~~~~~~~~~~  198 (276)
                      ....+.-|..+|+....
T Consensus       354 nL~~e~~gLvFGiNTFv  370 (433)
T KOG3810|consen  354 NLSSELFGLVFGINTFV  370 (433)
T ss_pred             hhhhhhheeeeehHHHH
Confidence            88888888888877664

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=89.14  E-value=2.5  Score=35.66  Aligned_cols=110  Identities=9%  Similarity=0.050  Sum_probs=76.3

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHH---HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHH
Q 023846          101 FQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVG---LTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAP  177 (276)
Q Consensus       101 ~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~  177 (276)
                      .|.-|....|.+|.+++.-..-..-  ...-+.+.+-   .+++.+.-.+..+.++++..++.-+.-|+-.|..++...-
T Consensus       288 sqYRwyqvlYQlGVFiSRSS~~~~~--~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~  365 (409)
T KOG3880|consen  288 SQYRWYQVLYQLGVFISRSSINLFT--MPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFH  365 (409)
T ss_pred             hcchhhheeeeeeEEEEeccceEEe--chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHH
Confidence            4577888888888766443221111  1111122221   2223333345667889999999999999998999999888


Q ss_pred             HHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHh
Q 023846          178 FIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGW  212 (276)
Q Consensus       178 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  212 (276)
                      -+.+-.++++|-.+++.....-.+|..++..++-.
T Consensus       366 ~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalp  400 (409)
T KOG3880|consen  366 NIHKETEPDVREFAMSAVSISDSIGIFLAGLLALP  400 (409)
T ss_pred             HHhhcCCchHHHHhHhhheecchhhHHHHHHHhcc
Confidence            88888889999999999999988888887766543

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=88.72  E-value=8.5  Score=31.57  Aligned_cols=103  Identities=15%  Similarity=0.146  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHHhHHHHhhhc-cCChhhHH----HHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHhhhhhhhh
Q 023846          104 GVLSSAFMVGLLVASPIFASLARS-VNPFRLIG----VGLTVWTLAVVGCGFS-----FSFWMIAICRMLVGVGEASFIS  173 (276)
Q Consensus       104 ~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~----~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~~~~~~  173 (276)
                      ....-++..|..+|....|..... +.||+.+.    .+.++.++..+.....     .++..+.+.-++.|++.=+.++
T Consensus       144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~  223 (267)
T PF07672_consen  144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG  223 (267)
T ss_pred             HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence            455666667777787888888764 56666554    2233333333332111     1456677777888877655555


Q ss_pred             cHHHHHhhc--CcchhhhHHHHHHHHHhhhhhhHH
Q 023846          174 LAAPFIDDN--APVAKKTAWLGVFYMCLPSGYAIG  206 (276)
Q Consensus       174 ~~~~~i~~~--~~~~~r~~~~~~~~~~~~~g~~~g  206 (276)
                      +...+=-|.  .+|++-|...|+.-..+.+...+.
T Consensus       224 ViL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~yTi~  258 (267)
T PF07672_consen  224 VILNLPHEYKGYNPKKIGIQFGLIWGFGYIFYTIY  258 (267)
T ss_pred             HHhcChhhhcCCCcceehhHHHHHHHHHHHHHHHH
Confidence            544443343  345555666655444433333333

>PRK10263 DNA translocase FtsK; Provisional

Probab=88.23  E-value=6.3  Score=39.65  Aligned_cols=9  Identities=0%  Similarity=0.098  Sum_probs=3.5

Q ss_pred             Hhhhhcccc
Q 023846           62 YVDRGTIAS   70 (276)
Q Consensus        62 ~~~~~~~~~   70 (276)
                      ++....+++
T Consensus        36 fL~lALiSY   44 (1355)
T PRK10263         36 WLMAALLSF   44 (1355)
T ss_pred             HHHHHHHhC
Confidence            333334443

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=84.49  E-value=32  Score=31.29  Aligned_cols=72  Identities=14%  Similarity=0.130  Sum_probs=48.4

Q ss_pred             HHHHhhhhhhhhcHHHHHhhcCc-chhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHH
Q 023846          162 MLVGVGEASFISLAAPFIDDNAP-VAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFA  233 (276)
Q Consensus       162 ~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~  233 (276)
                      +..|+........--..+.+.+| ++++...+|-++...++-..+-..+++.+. ..||+..-.+.-++.++..
T Consensus       290 i~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~lit~  363 (491)
T PF03219_consen  290 IAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILITG  363 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Confidence            44556655666666666777776 456777788777777666666557777777 8899988777655544433

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF12805 FUSC-like: FUSC-like inner membrane protein yccS

Probab=84.26  E-value=12  Score=31.09  Aligned_cols=36  Identities=17%  Similarity=0.200  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhh
Q 023846          136 VGLTVWTLAVVGCGFS-FSFWMIAICRMLVGVGEASF  171 (276)
Q Consensus       136 ~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~~~~  171 (276)
                      .+++++++..++..+. ++.+.+.+..++.+++.+..
T Consensus         4 ~~~~~~~~~s~~~~l~~~~~~l~~~~~~~~~F~~~ml   40 (284)
T PF12805_consen    4 ATLLCFALASLLVGLLFPYPWLLILVLALLTFFFGML   40 (284)
T ss_pred             HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence            3444443444433333 34455555555555554443

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=80.63  E-value=25  Score=31.92  Aligned_cols=55  Identities=11%  Similarity=0.080  Sum_probs=43.6

Q ss_pred             HHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHh
Q 023846          158 AICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGW  212 (276)
Q Consensus       158 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  212 (276)
                      ++.-++.-+..-..+....++=+...+|..=|+.|.+.++..++|+---..+.-+
T Consensus       409 I~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~  463 (544)
T PF13000_consen  409 IIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLW  463 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHH
Confidence            3345666677777788888999999999999999999999999998765544433

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	276
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	6e-09
2cfq_A	417	Lactose permease; transport, transport mechanism,	7e-06
2cfq_A	417	Lactose permease; transport, transport mechanism,	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 55.1 bits (133), Expect = 6e-09
 Identities = 22/151 (14%), Positives = 46/151 (30%), Gaps = 6/151 (3%)

Query: 95  DFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGF---- 150
           +   +    G   S   +    +  I  S++   NP   +  GL +    ++  GF    
Sbjct: 56  EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA 115

Query: 151 SFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYG 210
           + S  ++ +   L G  +          +       ++   + V+      G  I  +  
Sbjct: 116 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 175

Query: 211 GWV--GHYNWRYAFWGEAILMFPFAVLGFVM 239
                   +W  A +  A      A+  F M
Sbjct: 176 LLGMAWFNDWHAALYMPAFCAILVALFAFAM 206

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 45.7 bits (108), Expect = 7e-06
 Identities = 13/118 (11%), Positives = 36/118 (30%), Gaps = 2/118 (1%)

Query: 124 LARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNA 183
           +   +     + +  T+ ++ ++G  F+ S   + I + L        +     +I    
Sbjct: 282 IINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF 341

Query: 184 PVAKKTAWLGVFYMCLPS-GYAIGYVYGGWV-GHYNWRYAFWGEAILMFPFAVLGFVM 239
            V        V +            V  G +     ++ A+    ++   F ++    
Sbjct: 342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 28/164 (17%), Positives = 58/164 (35%), Gaps = 6/164 (3%)

Query: 98  LNNFQDGVLSSAFMVGLLVASPIFASLA----RSVNPFRLIGVGLTVWTLAVVGCGFSFS 153
           ++    G++ +A  +  L+  P+F  L+           +I   L ++    +       
Sbjct: 40  ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL 99

Query: 154 FWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWL--GVFYMCLPSGYAIGYVYGG 211
            + I +  ++ G+      +  AP ++       + +    G   M    G+A+G    G
Sbjct: 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG 159

Query: 212 WVGHYNWRYAFWGEAILMFPFAVLGFVMKPLQLKGFAPAESKKA 255
            +   N ++ FW  +      AVL F  K         A +  A
Sbjct: 160 IMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGA 203

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 53/325 (16%), Positives = 83/325 (25%), Gaps = 99/325 (30%)

Query: 13  AASLAEPRTNPSVEDTGMV--RNSLTLSPPKPSWFTPG---RLLVIFCFINLLNYVDRGT 67
            + +   +  PS+     +  R+ L         F      RL         L  +    
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV---FAKYNVSRLQPYLKLRQALLELRPAK 151

Query: 68  -IASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNF---------QDGVLSSAFMVGLLV- 116
            +  +GV GS K   A   C     +Q   D   F          + VL    +  LL  
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLS-YKVQCKMDFKIFWLNLKNCNSPETVL--EMLQKLLYQ 208

Query: 117 ASPIFASLA-RSVNPFRLIGVGLT--------------------VWTLAVVGCGFSFSFW 155
             P + S +  S N    I                         V         F+ S  
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN-AFNLS-- 265

Query: 156 MIAICRMLV-----------GVGEASFISL---AAPFIDDNAP--VAKKTAWLGVFYMCL 199
               C++L+                + ISL   +     D     + K   +L      L
Sbjct: 266 ----CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK---YLDCRPQDL 318

Query: 200 P------SGYA---IGYVYGGWVGHY-NWRYAFW---GEAILMFPFAVLGFVMKPLQLKG 246
           P      +      I       +  + NW++         I                L  
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS-------------LNV 365

Query: 247 FAPAESKKAFTDIEIAFPEAQGDTH 271
             PAE +K F  + + FP      H
Sbjct: 366 LEPAEYRKMFDRLSV-FPP---SAH 386

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	276
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.92
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.92
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.89
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.89
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.88
2xut_A	524	Proton/peptide symporter family protein; transport	99.84
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.69
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.61
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.6
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.58
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.56
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.5
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.26
2xut_A	524	Proton/peptide symporter family protein; transport	99.07

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.92  E-value=5.1e-24  Score=186.15  Aligned_cols=181  Identities=18%  Similarity=0.182  Sum_probs=154.9

Q ss_pred             hhhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhh
Q 023846           47 PGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLAR  126 (276)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d  126 (276)
                      .++.+.++++.++...++...++.                 .+|.+.+++|++..+.+++.+.+.++..++++++|+++|
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~d   86 (438)
T 3o7q_A           24 YIIPFALLCSLFFLWAVANNLNDI-----------------LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMK   86 (438)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHH-----------------HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            344555556666666666555543                 347899999999999999999999999999999999999


Q ss_pred             ccCChhhHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhh
Q 023846          127 SVNPFRLIGVGLTVWTLAVVGC---GFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGY  203 (276)
Q Consensus       127 ~~grr~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~  203 (276)
                      |+|||+++.++.++.+++.+++   .++++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.
T Consensus        87 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  166 (438)
T 3o7q_A           87 KLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGA  166 (438)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHH
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998   8889999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhc-cc-c-------------------------hhHHHHHhHHHHHHHHHHHHhh-ccccc
Q 023846          204 AIGYVYGGWVG-HY-N-------------------------WRYAFWGEAILMFPFAVLGFVM-KPLQL  244 (276)
Q Consensus       204 ~~g~~~~~~l~-~~-~-------------------------w~~~~~~~~~~~~~~~~~~~~~-~~~~~  244 (276)
                      +++|.+++.+. .. +                         ||+.|++.+++.++..++.++. .|+++
T Consensus       167 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~  235 (438)
T 3o7q_A          167 IIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQ  235 (438)
T ss_dssp             HHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCT
T ss_pred             HHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence            99999998886 33 2                         9999988887776666555444 34433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.92  E-value=1.4e-24  Score=190.26  Aligned_cols=182  Identities=15%  Similarity=0.087  Sum_probs=161.1

Q ss_pred             hhhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhh
Q 023846           47 PGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLAR  126 (276)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d  126 (276)
                      +++.+..+++..+...++...+..                 .+|.+.+++ .+..+.+++.+++.++..++++++|+++|
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~d   87 (451)
T 1pw4_A           26 RWQIFLGIFFGYAAYYLVRKNFAL-----------------AMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSD   87 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHH-----------------HHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            345566666677777766666554                 347888999 99999999999999999999999999999


Q ss_pred             ccCChhhHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhh
Q 023846          127 SVNPFRLIGVGLTVWTLAVVGCGF----SFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSG  202 (276)
Q Consensus       127 ~~grr~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  202 (276)
                      |+|||+++.++.++.+++.+++++    +++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|
T Consensus        88 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  167 (451)
T 1pw4_A           88 RSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG  167 (451)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHH
T ss_pred             hcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHH
Confidence            999999999999999999999999    9999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhhc-ccc-hhHHHHHhHHHHHHHHHHHHhhcccccCC
Q 023846          203 YAIGYVYGGWVG-HYN-WRYAFWGEAILMFPFAVLGFVMKPLQLKG  246 (276)
Q Consensus       203 ~~~g~~~~~~l~-~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (276)
                      .+++|.+++++. ..+ ||+.|++.+++.++..++.+++.||+++.
T Consensus       168 ~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~  213 (451)
T 1pw4_A          168 GGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQS  213 (451)
T ss_dssp             HTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTT
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhh
Confidence            999999999877 778 99999999988877777766666665543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.89  E-value=4.5e-23  Score=182.87  Aligned_cols=179  Identities=16%  Similarity=0.212  Sum_probs=147.3

Q ss_pred             HHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccccCC--------CchhHHHHHHHHHHHHHHHHhHHH
Q 023846           51 LVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDL--------NNFQDGVLSSAFMVGLLVASPIFA  122 (276)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~i~~~~~g  122 (276)
                      .++++++.++.++|...++.                 ++|.+.++++.        +..+.+++.+.+.+|.++|++++|
T Consensus        14 ~~~a~lg~~~~Gyd~~~i~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G   76 (491)
T 4gc0_A           14 TLVATLGGLLFGYDTAVISG-----------------TVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGG   76 (491)
T ss_dssp             HHHHHHHHHHHHHHHHGGGG-----------------THHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445666777788777764                 34677766642        345678999999999999999999


Q ss_pred             HhhhccCChhhHHHHHHHHHHHHHHHh------------------hhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCc
Q 023846          123 SLARSVNPFRLIGVGLTVWTLAVVGCG------------------FSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAP  184 (276)
Q Consensus       123 ~l~d~~grr~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~  184 (276)
                      +++||+|||+++.++.+++.++.++++                  ++++++.++++|+++|++.|...+....+++|+.|
T Consensus        77 ~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p  156 (491)
T 4gc0_A           77 YCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAP  156 (491)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            999999999999999999999999888                  47899999999999999999999999999999999


Q ss_pred             chhhhHHHHHHHHHhhhhhhHHHHHHHhhc---------ccchhHHHHHhHHHHHHHHHHHHhhcccccCCC
Q 023846          185 VAKKTAWLGVFYMCLPSGYAIGYVYGGWVG---------HYNWRYAFWGEAILMFPFAVLGFVMKPLQLKGF  247 (276)
Q Consensus       185 ~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~---------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (276)
                      +++|++..++.+.+..+|.++++.++..+.         ..+||+.+.+..+..++. ++..++.||++++.
T Consensus       157 ~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~peSp~~L  227 (491)
T 4gc0_A          157 AHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF-LMLLYTVPESPRWL  227 (491)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH-HHHGGGSCCCHHHH
T ss_pred             HHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh-hhhhhcCCCChHHH
Confidence            999999999999999999999988876654         235888777776665444 34445578887654

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.89  E-value=1.1e-22  Score=174.46  Aligned_cols=157  Identities=14%  Similarity=0.146  Sum_probs=144.7

Q ss_pred             ccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 023846           89 GTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGE  168 (276)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  168 (276)
                      +|.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||+++.++.++.+++.+++.++++++.+++.|++.|++.
T Consensus        23 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~  102 (375)
T 2gfp_A           23 IADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGT  102 (375)
T ss_dssp             HHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhcccccC
Q 023846          169 ASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQLK  245 (276)
Q Consensus       169 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (276)
                      +...+...+++.|++|+++|++++++.+....+|..++|.+++++. ..+||+.|++.+++.++..+...+..||+++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (375)
T 2gfp_A          103 GVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRP  180 (375)
T ss_dssp             HHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred             HhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence            9999999999999999999999999999999999999999999998 7799999999888776665545555566543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.88  E-value=5.2e-22  Score=176.10  Aligned_cols=153  Identities=12%  Similarity=0.038  Sum_probs=138.9

Q ss_pred             cccccc-----cCCCchhHHHHHHHHHHHHHHHHhHHHHhhhc-cCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 023846           90 TGIQGD-----FDLNNFQDGVLSSAFMVGLLVASPIFASLARS-VNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRML  163 (276)
Q Consensus        90 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l  163 (276)
                      +++.++     +|++..+.+++.+.+.++..+++++.|+++|| +|||+++.++.++.+++.++++++++++.++++|++
T Consensus        38 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  117 (491)
T 4aps_A           38 YYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIIL  117 (491)
T ss_dssp             HHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHH
T ss_pred             HHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            355555     99999999999999999999999999999999 899999999999999999999999999999999999


Q ss_pred             HHhhhhhhhhcHHHHHhhcCcchh--hhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhc
Q 023846          164 VGVGEASFISLAAPFIDDNAPVAK--KTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMK  240 (276)
Q Consensus       164 ~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~  240 (276)
                      .|++.+...+...+++.|++|+++  |+.++++++...++|..++|.+++.+. ..|||+.|++.++..++..+..++..
T Consensus       118 ~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  197 (491)
T 4aps_A          118 IIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGG  197 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999988  788888899999999999999999998 78999999998877766666555444


Q ss_pred             cc
Q 023846          241 PL  242 (276)
Q Consensus       241 ~~  242 (276)
                      ++
T Consensus       198 ~~  199 (491)
T 4aps_A          198 KK  199 (491)
T ss_dssp             HT
T ss_pred             cc
Confidence            43

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.84  E-value=6.6e-20  Score=163.90  Aligned_cols=150  Identities=14%  Similarity=0.102  Sum_probs=135.8

Q ss_pred             cccccccC------CCchhHHHHHHHHHHHHHHHHhHHHHhhhcc-CChhhHHHHHHHHHHHHHHHhhhh-hHHHHHHHH
Q 023846           90 TGIQGDFD------LNNFQDGVLSSAFMVGLLVASPIFASLARSV-NPFRLIGVGLTVWTLAVVGCGFSF-SFWMIAICR  161 (276)
Q Consensus        90 ~~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r  161 (276)
                      +++.+++|      ++..+.+++.+.+.++..+++++.|+++||+ |||+++.++.++.+++.+++++++ +++.++++|
T Consensus        37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (524)
T 2xut_A           37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGL  116 (524)
T ss_dssp             HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            36677888      9999999999999999999999999999999 999999999999999999999999 999999999


Q ss_pred             HHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHH---HHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHH
Q 023846          162 MLVGVGEASFISLAAPFIDDNAPVAKKTAWLGV---FYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGF  237 (276)
Q Consensus       162 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~  237 (276)
                      ++.|++.+...+...+++.|++|+++|+++.+.   .+.+.++|.+++|.+++++. ..+|++.|++.+++.++..+..+
T Consensus       117 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          117 FLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999776666   89999999999999999988 78999999998887665555444


Q ss_pred             hh
Q 023846          238 VM  239 (276)
Q Consensus       238 ~~  239 (276)
                      +.
T Consensus       197 ~~  198 (524)
T 2xut_A          197 LG  198 (524)
T ss_dssp             SS
T ss_pred             Hh
Confidence            43

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.69  E-value=9.1e-16  Score=134.14  Aligned_cols=149  Identities=11%  Similarity=-0.003  Sum_probs=131.0

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhcc--CChhhHHHHHHHHH-HHHHHHhhh--hhHHHHHHHHHHHH
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSV--NPFRLIGVGLTVWT-LAVVGCGFS--FSFWMIAICRMLVG  165 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--grr~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~r~l~G  165 (276)
                      ++++.+|.+..+.+++.+.+.++.+++.++.|++.||+  |||+.+.++..+.. ++.++..+.  .+.+.+.+..++.|
T Consensus       278 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  357 (451)
T 1pw4_A          278 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG  357 (451)
T ss_dssp             HBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence            44555899999999999999999999999999999999  99999988887776 677776666  36788888889999


Q ss_pred             hhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhh-hhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhh
Q 023846          166 VGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPS-GYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVM  239 (276)
Q Consensus       166 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~  239 (276)
                      ++.+...+....++.|.+|+++|++++|+.+....+ |..++|.+.+.+. ..||++.|++.+++.++..++.++.
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          358 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            998998898899999999999999999999999999 9999999999998 7899999999888877766665554

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.61  E-value=9.3e-15  Score=127.06  Aligned_cols=143  Identities=10%  Similarity=0.037  Sum_probs=122.3

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHHHH
Q 023846          100 NFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFI  179 (276)
Q Consensus       100 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i  179 (276)
                      ....+++.++..++.+++.++.|++.||+|||+++.++.++.+++.++.++.++.+.+++..++.+++.+...+....++
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  337 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI  337 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45568888888888999999999999999999999999988888888888888888888888888888777777778899


Q ss_pred             hhcCcchhhhHHHHH-HHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhccc
Q 023846          180 DDNAPVAKKTAWLGV-FYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPL  242 (276)
Q Consensus       180 ~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~  242 (276)
                      .|.+|++.|+++.++ ++....+|.+++|.++|++. ..|++..|.+.+++.++..++.+++.|+
T Consensus       338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~  402 (417)
T 2cfq_A          338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred             HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            999999999999998 48888899999999999888 7789999998888877766665555554

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.60  E-value=2.7e-16  Score=136.76  Aligned_cols=145  Identities=17%  Similarity=0.137  Sum_probs=106.8

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHH---HHHhhhhhHH-HHHHHHHHHHh
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAV---VGCGFSFSFW-MIAICRMLVGV  166 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~r~l~G~  166 (276)
                      ++++++|++..+.|++.+.+.++..++++++|+++||+|||+++.++..+.++..   ..+.+++... .+..++++.|+
T Consensus        33 ~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (417)
T 2cfq_A           33 WLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGI  112 (417)
T ss_dssp             HHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGS
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667799999999999999999999999999999999999999998887765422   2223333221 23455666666


Q ss_pred             hhhhhhhcHHHHHhhcCcc--hhhhHHHHHHHHHhhhhhhHHHHHHHhhcccchhHHHHHhHHHHHHHHHH
Q 023846          167 GEASFISLAAPFIDDNAPV--AKKTAWLGVFYMCLPSGYAIGYVYGGWVGHYNWRYAFWGEAILMFPFAVL  235 (276)
Q Consensus       167 ~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~w~~~~~~~~~~~~~~~~~  235 (276)
                      +.+..++.....+.++.++  ++++...+.......+|..++|.+++++...+|++.|++.++..++..+.
T Consensus       113 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~  183 (417)
T 2cfq_A          113 YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVL  183 (417)
T ss_dssp             STTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence            5555555545555555443  45677788888888999999999999988668999999887765444333

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.58  E-value=1.6e-14  Score=125.80  Aligned_cols=136  Identities=10%  Similarity=-0.102  Sum_probs=117.7

Q ss_pred             cccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh
Q 023846           92 IQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASF  171 (276)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~  171 (276)
                      +++.+|.+..+.+++.+.+.++..++.++.|++.||+|||+++.++.++.+++.++..+.++.+.++.. ++.|++.+..
T Consensus       286 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~  364 (438)
T 3o7q_A          286 VEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQ  364 (438)
T ss_dssp             HHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTH
T ss_pred             hhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHH
Confidence            556679999999999999999999999999999999999999999999999998888888877665444 8889999999


Q ss_pred             hhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccc-hhHHHHHhHHHHH
Q 023846          172 ISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYN-WRYAFWGEAILMF  230 (276)
Q Consensus       172 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~-w~~~~~~~~~~~~  230 (276)
                      .+...+++.|.+|++ ++.+.++.. ...+|..++|.+.+++. ..| ++..|++.++..+
T Consensus       365 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  423 (438)
T 3o7q_A          365 YPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFA  423 (438)
T ss_dssp             HHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHH
T ss_pred             HHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            999999999999966 888888777 56799999999999998 667 9998887655443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.56  E-value=1.4e-14  Score=128.18  Aligned_cols=152  Identities=14%  Similarity=0.044  Sum_probs=123.8

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHH-----HHHHHHHHHHHHHhhhh---------hHHH
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIG-----VGLTVWTLAVVGCGFSF---------SFWM  156 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~-----~~~~~~~~~~~~~~~~~---------~~~~  156 (276)
                      +..+.++.+..+.+++.+...++..++.++.|++.||+|||+...     ++.++.+++.++..+..         +.+.
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (491)
T 4aps_A          309 FAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLW  388 (491)
T ss_dssp             HHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHH
T ss_pred             HHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHH
Confidence            344556666667788888999999999999999999999987655     77777777777666643         6777


Q ss_pred             HHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhcccchhHHHHHhHHHHHHHHHHH
Q 023846          157 IAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGHYNWRYAFWGEAILMFPFAVLG  236 (276)
Q Consensus       157 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~w~~~~~~~~~~~~~~~~~~  236 (276)
                      +.+..++.|++.+...+....++.|.+|+++|+++.|+.+....+|..+++.+.+.+...++.+.|++.+++.++..++.
T Consensus       389 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (491)
T 4aps_A          389 LVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVL  468 (491)
T ss_dssp             HHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            88888999999999899999999999999999999999999999999999999998886678888888888877777766


Q ss_pred             Hhhccc
Q 023846          237 FVMKPL  242 (276)
Q Consensus       237 ~~~~~~  242 (276)
                      +++.++
T Consensus       469 ~~~~~~  474 (491)
T 4aps_A          469 VFLSKR  474 (491)
T ss_dssp             HHC---
T ss_pred             HHHHHH
Confidence            666544

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.50  E-value=9.6e-13  Score=116.33  Aligned_cols=157  Identities=9%  Similarity=-0.013  Sum_probs=117.5

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHH-
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSF----SFWMIAICRMLV-  164 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~r~l~-  164 (276)
                      +.+.+..+.+............+...++.++.+++.||+|||+.++.+.....++.+..+...    .....++..++. 
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  380 (491)
T 4gc0_A          301 PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV  380 (491)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             hHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            466677777777777778888888999999999999999999999998888877766554331    112222222222 


Q ss_pred             HhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-------ccchhHHHHHhHHHHHHHHHHHH
Q 023846          165 GVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-------HYNWRYAFWGEAILMFPFAVLGF  237 (276)
Q Consensus       165 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-------~~~w~~~~~~~~~~~~~~~~~~~  237 (276)
                      +.......+....+.+|.+|.+.|++++|+......+|..+++.+.+.+.       ..++.++|++.++++++..++.+
T Consensus       381 ~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~  460 (491)
T 4gc0_A          381 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW  460 (491)
T ss_dssp             HHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            22222334667789999999999999999999999999998887765553       34567788898998888888888


Q ss_pred             hhcccccCC
Q 023846          238 VMKPLQLKG  246 (276)
Q Consensus       238 ~~~~~~~~~  246 (276)
                      ++.||++..
T Consensus       461 ~~~PETkg~  469 (491)
T 4gc0_A          461 KFVPETKGK  469 (491)
T ss_dssp             HHCCCCTTC
T ss_pred             heecCCCCC
Confidence            888987644

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.26  E-value=6.2e-12  Score=107.31  Aligned_cols=132  Identities=7%  Similarity=-0.016  Sum_probs=105.4

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHH-HHHHHHH--Hhh--hhhHHHHHHHHHHHH
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTV-WTLAVVG--CGF--SFSFWMIAICRMLVG  165 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~-~~~~~~~--~~~--~~~~~~~~~~r~l~G  165 (276)
                      ++++++|.++.+.+++.+...++..++.++.+++.||++++  +..+..+ ..++..+  ...  .++.+.+++..++.|
T Consensus       225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  302 (375)
T 2gfp_A          225 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFF  302 (375)
T ss_dssp             SSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHH
Confidence            44555899999999999999999999999999999999873  3333333 2222221  122  236777788889999


Q ss_pred             hhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHh
Q 023846          166 VGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGE  225 (276)
Q Consensus       166 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~  225 (276)
                      ++.+...+....++.|.+| ++|+++.++.+....+|..++|.+.+.+. ..+|+..+++.
T Consensus       303 ~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~  362 (375)
T 2gfp_A          303 FGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT  362 (375)
T ss_dssp             HHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence            9999999999999999998 89999999999999999999999998887 66777777664

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.07  E-value=2.3e-10  Score=101.99  Aligned_cols=141  Identities=13%  Similarity=0.124  Sum_probs=101.8

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHhh----hccCC----hhhHHHHHHHHHHHHHHHhhh---------hhHHHHHHHHHHH
Q 023846          102 QDGVLSSAFMVGLLVASPIFASLA----RSVNP----FRLIGVGLTVWTLAVVGCGFS---------FSFWMIAICRMLV  164 (276)
Q Consensus       102 ~~~~~~~~~~~~~~i~~~~~g~l~----d~~gr----r~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~r~l~  164 (276)
                      ..+++.....++..++.++.+++.    +|.|+    ++.+.++.++.+++.++.++.         .+.+.+++..++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  415 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL  415 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence            356666666677777777777764    55443    356677888888888777664         3667788889999


Q ss_pred             HhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-cc--ch---------hHHHHHhHHHHHHH
Q 023846          165 GVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HY--NW---------RYAFWGEAILMFPF  232 (276)
Q Consensus       165 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~--~w---------~~~~~~~~~~~~~~  232 (276)
                      |++.+...+....++.|.+|+++|++++|+.+....+|..++|.+.+.+. ..  +|         +..|++.+++.++.
T Consensus       416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (524)
T 2xut_A          416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA  495 (524)
T ss_dssp             HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999887 22  34         33466666666665


Q ss_pred             HHHHHhhccc
Q 023846          233 AVLGFVMKPL  242 (276)
Q Consensus       233 ~~~~~~~~~~  242 (276)
                      .++.+++.++
T Consensus       496 ~~~~~~~~~~  505 (524)
T 2xut_A          496 AIVFALYARS  505 (524)
T ss_dssp             HHHHC-----
T ss_pred             HHHHHHHHHH
Confidence            5555544443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	276
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	4e-09
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	7e-04

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 54.7 bits (130), Expect = 4e-09
 Identities = 20/198 (10%), Positives = 48/198 (24%), Gaps = 22/198 (11%)

Query: 49  RLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSS 108
           ++ +   F     Y+ R   A                         +   +    G   S
Sbjct: 25  QIFLGIFFGYAAYYLVRKNFA------------------LAMPYLVEQGFSRGDLGFALS 66

Query: 109 AFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGC----GFSFSFWMIAICRMLV 164
              +    +  I  S++   NP   +  GL +    ++        + S  ++ +   L 
Sbjct: 67  GISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLC 126

Query: 165 GVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGHYNWRYAFWG 224
           G  +          +       ++   + V+      G  I  +       +   +    
Sbjct: 127 GWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAAL 186

Query: 225 EAILMFPFAVLGFVMKPL 242
                    V  F    +
Sbjct: 187 YMPAFCAILVALFAFAMM 204

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 38.2 bits (87), Expect = 7e-04
 Identities = 13/106 (12%), Positives = 33/106 (31%), Gaps = 2/106 (1%)

Query: 136 VGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVF 195
           +  T+ ++ ++G  F+ S   + I + L        +     +I     V        V 
Sbjct: 294 LAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVC 353

Query: 196 YMCLPS-GYAIGYVYGGWV-GHYNWRYAFWGEAILMFPFAVLGFVM 239
           +            V  G +     ++ A+    ++   F ++    
Sbjct: 354 FCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	276
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.92
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.7
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.63
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.62

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=3.2e-25  Score=191.55  Aligned_cols=181  Identities=14%  Similarity=0.075  Sum_probs=157.7

Q ss_pred             hhhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhh
Q 023846           47 PGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLAR  126 (276)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d  126 (276)
                      +|.++..++++++..++++..++..                 .|.++ |+|++.++.|++.+++.++++++++++|+++|
T Consensus        23 ~w~i~~~~~~~~~~~~~~~~~~~~~-----------------~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~D   84 (447)
T d1pw4a_          23 RWQIFLGIFFGYAAYYLVRKNFALA-----------------MPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSD   84 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHH-----------------HHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666777788888887777653                 36665 58999999999999999999999999999999


Q ss_pred             ccCChhhHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhh
Q 023846          127 SVNPFRLIGVGLTVWTLAVVGCGFSF----SFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSG  202 (276)
Q Consensus       127 ~~grr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  202 (276)
                      |+|||+++.++.++.+++.++++++.    +++.++++|++.|++.+...+....++.|++|+++|++++++.+.+..+|
T Consensus        85 r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  164 (447)
T d1pw4a_          85 RSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG  164 (447)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHH
T ss_pred             HcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchh
Confidence            99999999999999999998887764    67889999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhhc--ccchhHHHHHhHHHHHHHHHHHHhhcccccC
Q 023846          203 YAIGYVYGGWVG--HYNWRYAFWGEAILMFPFAVLGFVMKPLQLK  245 (276)
Q Consensus       203 ~~~g~~~~~~l~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (276)
                      .+++|.+++.+.  ..+||+.|++.+++.++..++.+++.++.++
T Consensus       165 ~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (447)
T d1pw4a_         165 GGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ  209 (447)
T ss_dssp             HTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred             hhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchh
Confidence            999999888776  5689999999998888877777776655443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=3.6e-17  Score=138.00  Aligned_cols=152  Identities=9%  Similarity=0.007  Sum_probs=134.4

Q ss_pred             cccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh
Q 023846           92 IQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASF  171 (276)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~  171 (276)
                      ...+.+.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+.++.+.+++..++.|++.+..
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  329 (417)
T d1pv7a_         250 FFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFL  329 (417)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHH
Confidence            33444556677788889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcHHHHHhhcCcchhhhHHHHHH-HHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhcccc
Q 023846          172 ISLAAPFIDDNAPVAKKTAWLGVF-YMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQ  243 (276)
Q Consensus       172 ~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  243 (276)
                      .+...+++.|.+|++.|+++.++. +....+|..++|.+.|++. ..||+++|++.+++.++..++.++..+++
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         330 LVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            999999999999999999999975 5567799999999999998 88999999999988877777666665443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=6e-16  Score=130.34  Aligned_cols=158  Identities=15%  Similarity=0.103  Sum_probs=118.3

Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHH----HHHHHHHHh
Q 023846           91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMI----AICRMLVGV  166 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~r~l~G~  166 (276)
                      ++++++|++..++|++.+++.++..++++++|+++||+|||++++++..+..++..+..+..+....    ++.+.+.+.
T Consensus        33 ~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (417)
T d1pv7a_          33 WLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGI  112 (417)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTT
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhh
Confidence            4678899999999999999999999999999999999999999999999998888888777665544    344455555


Q ss_pred             hhhhhhhcHHHHHhhcCcc--hhhhHHHHHHHHHhhhhhhHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhhccccc
Q 023846          167 GEASFISLAAPFIDDNAPV--AKKTAWLGVFYMCLPSGYAIGYVYGGWVGHYNWRYAFWGEAILMFPFAVLGFVMKPLQL  244 (276)
Q Consensus       167 ~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (276)
                      +.+...........+..++  +++....+........+..+++.+++.+...+|++.+........+..++.++..++.+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (417)
T d1pv7a_         113 YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAP  192 (417)
T ss_dssp             TGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSCCCSC
T ss_pred             cccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHHHHHHHHHHhcccc
Confidence            5454444444444443332  34555677778888889999999999988667777777777766666666666666555


Q ss_pred             CCCC
Q 023846          245 KGFA  248 (276)
Q Consensus       245 ~~~~  248 (276)
                      ....
T Consensus       193 ~~~~  196 (417)
T d1pv7a_         193 SSAT  196 (417)
T ss_dssp             SSSC
T ss_pred             cchh
Confidence            4433

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=1.3e-15  Score=130.57  Aligned_cols=151  Identities=13%  Similarity=-0.023  Sum_probs=120.1

Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHH---HHHHHh--hhhhHHHHHHHHHHH
Q 023846           90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTL---AVVGCG--FSFSFWMIAICRMLV  164 (276)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~r~l~  164 (276)
                      .++.+.++.+..+.++..+.+.++.+++.++.|++.||++||+..........+   +.++..  ...+.+...+..++.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (447)
T d1pw4a_         274 TYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVI  353 (447)
T ss_dssp             HHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHH
T ss_pred             hhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            366778899999999999999999999999999999999987654443333222   222222  234777888888899


Q ss_pred             HhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhh-hhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhc
Q 023846          165 GVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPS-GYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMK  240 (276)
Q Consensus       165 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~  240 (276)
                      |++.+...+....++.|.+|++.|+++.|+.+....+ |.+++|.+.+++. ..||+..|++.++..++..++.+++.
T Consensus       354 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  431 (447)
T d1pw4a_         354 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  431 (447)
T ss_dssp             HHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998888888999999999999999999999888777 5567899999988 88999999888877766666555543