Query 023847
Match_columns 276
No_of_seqs 254 out of 1103
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 13:47:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023847.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023847hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 3.1E-18 1E-22 131.9 5.0 68 154-221 6-73 (82)
2 4ati_A MITF, microphthalmia-as 99.7 2.3E-17 7.7E-22 135.1 7.7 74 140-213 13-89 (118)
3 4h10_B Circadian locomoter out 99.6 4.3E-16 1.5E-20 118.0 4.2 59 153-211 7-65 (71)
4 1a0a_A BHLH, protein (phosphat 99.6 1.6E-16 5.3E-21 117.4 1.7 54 155-208 3-62 (63)
5 1hlo_A Protein (transcription 99.6 9.8E-16 3.3E-20 116.9 5.8 64 155-219 13-78 (80)
6 1an4_A Protein (upstream stimu 99.6 3.6E-16 1.2E-20 114.8 2.8 56 153-208 4-64 (65)
7 1nkp_B MAX protein, MYC proto- 99.6 1.7E-15 5.6E-20 116.1 6.5 64 156-220 4-69 (83)
8 1nkp_A C-MYC, MYC proto-oncoge 99.5 1E-14 3.4E-19 113.9 7.3 62 156-218 8-72 (88)
9 4h10_A ARYL hydrocarbon recept 99.5 1.1E-15 3.8E-20 116.1 1.1 55 150-205 5-63 (73)
10 1nlw_A MAD protein, MAX dimeri 99.5 8.9E-14 3.1E-18 107.0 7.3 64 156-220 3-69 (80)
11 3u5v_A Protein MAX, transcript 99.4 6E-14 2.1E-18 107.2 4.4 57 155-211 6-65 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.1 3.7E-11 1.2E-15 90.0 2.7 53 156-208 14-67 (68)
13 2ql2_B Neurod1, neurogenic dif 99.0 2.4E-10 8.4E-15 83.5 5.8 52 157-208 5-58 (60)
14 4f3l_A Mclock, circadian locom 99.0 3.6E-10 1.2E-14 104.6 6.3 57 151-207 9-65 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.9 4.5E-10 1.5E-14 105.3 3.7 56 150-206 9-68 (387)
16 4ath_A MITF, microphthalmia-as 98.9 2.9E-09 9.8E-14 82.9 7.3 50 166-215 4-56 (83)
17 2lfh_A DNA-binding protein inh 98.6 1.8E-08 6.2E-13 75.8 2.3 45 161-205 21-67 (68)
18 4aya_A DNA-binding protein inh 98.1 4.8E-06 1.6E-10 66.5 6.8 48 162-209 33-82 (97)
19 1zme_C Proline utilization tra 75.1 2.5 8.5E-05 29.6 3.3 25 197-221 43-67 (70)
20 2wt7_A Proto-oncogene protein 73.6 4.9 0.00017 28.7 4.6 45 162-220 1-45 (63)
21 1pyi_A Protein (pyrimidine pat 67.2 8.7 0.0003 28.4 4.9 25 197-221 47-71 (96)
22 2wuj_A Septum site-determining 65.3 6.3 0.00022 27.8 3.6 30 191-220 27-56 (57)
23 2jee_A YIIU; FTSZ, septum, coi 60.7 11 0.00036 29.0 4.3 27 193-219 15-41 (81)
24 2er8_A Regulatory protein Leu3 59.5 5 0.00017 28.3 2.2 22 197-218 48-69 (72)
25 2oqq_A Transcription factor HY 55.8 9 0.00031 26.1 2.8 25 198-222 3-27 (42)
26 1dh3_A Transcription factor CR 53.5 10 0.00035 26.6 3.0 24 198-221 22-45 (55)
27 2l5g_A GPS2 protein, G protein 46.3 43 0.0015 22.3 4.9 31 187-217 4-34 (38)
28 3muj_A Transcription factor CO 44.7 30 0.001 28.9 4.9 36 168-203 95-133 (138)
29 2dgc_A Protein (GCN4); basic d 44.4 17 0.00058 26.1 3.0 25 197-221 29-53 (63)
30 1hwt_C Protein (heme activator 43.3 8 0.00027 27.7 1.1 22 197-218 57-78 (81)
31 3coq_A Regulatory protein GAL4 41.7 21 0.00073 25.7 3.3 25 197-221 44-68 (89)
32 1gd2_E Transcription factor PA 40.3 25 0.00087 25.9 3.5 13 202-214 54-66 (70)
33 1t2k_D Cyclic-AMP-dependent tr 39.1 23 0.0008 24.8 3.0 18 199-216 23-40 (61)
34 3he4_B Synzip5; heterodimeric 37.2 54 0.0018 22.1 4.3 25 193-217 5-29 (46)
35 1jnm_A Proto-oncogene C-JUN; B 35.7 38 0.0013 23.8 3.7 20 198-217 22-41 (62)
36 1gk7_A Vimentin; intermediate 31.7 37 0.0013 22.4 2.8 23 194-216 16-38 (39)
37 2ke4_A CDC42-interacting prote 29.4 1.3E+02 0.0043 23.4 6.0 33 188-220 59-91 (98)
38 1xkm_B Distinctin chain B; por 28.7 61 0.0021 19.6 3.1 19 190-208 3-21 (26)
39 3v86_A De novo design helix; c 27.8 47 0.0016 20.2 2.5 20 199-218 1-20 (27)
40 3s4r_A Vimentin; alpha-helix, 25.7 61 0.0021 24.8 3.6 26 194-219 19-44 (93)
41 1gu4_A CAAT/enhancer binding p 22.6 1.5E+02 0.005 22.2 5.1 32 190-221 38-73 (78)
42 3mq9_A Bone marrow stromal ant 22.4 46 0.0016 31.0 2.7 53 167-219 400-457 (471)
43 1cxz_B Protein (PKN); protein- 21.9 63 0.0022 24.9 3.0 22 200-221 65-86 (86)
44 1m2x_A Class B carbapenemase B 21.7 75 0.0026 25.9 3.6 30 179-209 192-221 (223)
45 1zke_A Hypothetical protein HP 20.8 95 0.0032 23.7 3.6 19 201-219 55-73 (83)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.72 E-value=3.1e-18 Score=131.91 Aligned_cols=68 Identities=26% Similarity=0.400 Sum_probs=62.3
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 023847 154 ATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRM 221 (276)
Q Consensus 154 a~~~Hs~aERkRRekIne~~~~LrsLVP~~~K~~dKAsIL~eAIdYIk~LQ~qV~~Le~~le~ln~~~ 221 (276)
.+..|+.+||+||++||++|..|++|||++...++||+||++||+||++||.+++.|+.+++.|...+
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999999999844459999999999999999999999999999987765
No 2
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.70 E-value=2.3e-17 Score=135.09 Aligned_cols=74 Identities=32% Similarity=0.473 Sum_probs=51.1
Q ss_pred CCCccccccccCCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCC---CChhhHHHHHHHHHHHHHHHHHHHHHH
Q 023847 140 PPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKV---IGKALVLDEIINYIQSLQRQVEFLSMK 213 (276)
Q Consensus 140 p~~d~~~~R~rr~~a~~~Hs~aERkRRekIne~~~~LrsLVP~~~K~---~dKAsIL~eAIdYIk~LQ~qV~~Le~~ 213 (276)
|..++.+...+++++++.|+++||+||++||++|..|++|||.|.+. ++|++||++||+||++||.+++.|+..
T Consensus 13 ~t~~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 13 PTESEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888889999999999999999999999999999998642 589999999999999999999999865
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.60 E-value=4.3e-16 Score=118.02 Aligned_cols=59 Identities=22% Similarity=0.427 Sum_probs=52.8
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 023847 153 QATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLS 211 (276)
Q Consensus 153 ~a~~~Hs~aERkRRekIne~~~~LrsLVP~~~K~~dKAsIL~eAIdYIk~LQ~qV~~Le 211 (276)
+.+.+|+++||+||++||++|.+|++|||++...++|++||++||+||++||.++..|+
T Consensus 7 ~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 7 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34568999999999999999999999999765335999999999999999999998875
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.60 E-value=1.6e-16 Score=117.39 Aligned_cols=54 Identities=31% Similarity=0.458 Sum_probs=48.2
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhcCCCCCC------CCChhhHHHHHHHHHHHHHHHHH
Q 023847 155 TDSHSLAERARREKISERMKILQDLVPGCNK------VIGKALVLDEIINYIQSLQRQVE 208 (276)
Q Consensus 155 ~~~Hs~aERkRRekIne~~~~LrsLVP~~~K------~~dKAsIL~eAIdYIk~LQ~qV~ 208 (276)
+++|+++||+||++||..|..|++|||.+.+ ..+||+||+.||+||++||++|+
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 5789999999999999999999999997632 24799999999999999998764
No 5
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.59 E-value=9.8e-16 Score=116.93 Aligned_cols=64 Identities=28% Similarity=0.493 Sum_probs=59.0
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023847 155 TDSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNS 219 (276)
Q Consensus 155 ~~~Hs~aERkRRekIne~~~~LrsLVP~~--~K~~dKAsIL~eAIdYIk~LQ~qV~~Le~~le~ln~ 219 (276)
+..|+..||+||.+||+.|..|++|||.+ .|. +|++||..||+||++||.+++.|+.+++.|..
T Consensus 13 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~-sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 13 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36799999999999999999999999987 454 99999999999999999999999999988764
No 6
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.59 E-value=3.6e-16 Score=114.80 Aligned_cols=56 Identities=27% Similarity=0.428 Sum_probs=50.0
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHhcCCCCCC-----CCChhhHHHHHHHHHHHHHHHHH
Q 023847 153 QATDSHSLAERARREKISERMKILQDLVPGCNK-----VIGKALVLDEIINYIQSLQRQVE 208 (276)
Q Consensus 153 ~a~~~Hs~aERkRRekIne~~~~LrsLVP~~~K-----~~dKAsIL~eAIdYIk~LQ~qV~ 208 (276)
..+..|+.+||+||++||+.|..|++|||.|.. .++|++||++||+||++||.+++
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 345789999999999999999999999999862 24999999999999999998764
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.58 E-value=1.7e-15 Score=116.11 Aligned_cols=64 Identities=28% Similarity=0.502 Sum_probs=56.9
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023847 156 DSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSR 220 (276)
Q Consensus 156 ~~Hs~aERkRRekIne~~~~LrsLVP~~--~K~~dKAsIL~eAIdYIk~LQ~qV~~Le~~le~ln~~ 220 (276)
..|+..||+||++||+.|..|+++||.+ .|. +|++||.+||+||++|+.+++.|+.+++.|...
T Consensus 4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~-sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~ 69 (83)
T 1nkp_B 4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQ 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999985 454 999999999999999999888888777776543
No 8
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.54 E-value=1e-14 Score=113.90 Aligned_cols=62 Identities=26% Similarity=0.420 Sum_probs=54.8
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023847 156 DSHSLAERARREKISERMKILQDLVPGCN---KVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVN 218 (276)
Q Consensus 156 ~~Hs~aERkRRekIne~~~~LrsLVP~~~---K~~dKAsIL~eAIdYIk~LQ~qV~~Le~~le~ln 218 (276)
..|+.+||+||++||++|..|+++||.+. |. +|++||.+||+||++|+.+++.|..+++.+.
T Consensus 8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~-sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~ 72 (88)
T 1nkp_A 8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKA-PKVVILKKATAYILSVQAEEQKLISEEDLLR 72 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999763 55 9999999999999999999888776665553
No 9
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.53 E-value=1.1e-15 Score=116.09 Aligned_cols=55 Identities=33% Similarity=0.529 Sum_probs=48.6
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCC----CCCCChhhHHHHHHHHHHHHHH
Q 023847 150 RRGQATDSHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQR 205 (276)
Q Consensus 150 rr~~a~~~Hs~aERkRRekIne~~~~LrsLVP~~----~K~~dKAsIL~eAIdYIk~LQ~ 205 (276)
+..+++++|+++||+||++||+.|.+|+.|||.| .|+ |||+||+.||+||+.||.
T Consensus 5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~Kl-dKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCC-CHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccc-cHHHHHHHHHHHHHHHhc
Confidence 3444567899999999999999999999999987 455 999999999999999974
No 10
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.46 E-value=8.9e-14 Score=106.95 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=56.7
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023847 156 DSHSLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSR 220 (276)
Q Consensus 156 ~~Hs~aERkRRekIne~~~~LrsLVP~~---~K~~dKAsIL~eAIdYIk~LQ~qV~~Le~~le~ln~~ 220 (276)
..|+..||+||..||+.|..|+++||.+ .| .+|+.||.+||+||+.|+.+.+.|..+++.|...
T Consensus 3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k-~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e 69 (80)
T 1nlw_A 3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSR-HTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQRE 69 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCC-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999965 34 4899999999999999999999888887776543
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.43 E-value=6e-14 Score=107.18 Aligned_cols=57 Identities=28% Similarity=0.372 Sum_probs=48.5
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 023847 155 TDSHSLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQRQVEFLS 211 (276)
Q Consensus 155 ~~~Hs~aERkRRekIne~~~~LrsLVP~~---~K~~dKAsIL~eAIdYIk~LQ~qV~~Le 211 (276)
+..|+..||+||.+||++|..|+.+||.+ .|..+|+.||..||+||++||+++++++
T Consensus 6 R~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 6 RAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35799999999999999999999999953 3333799999999999999999999874
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.08 E-value=3.7e-11 Score=90.05 Aligned_cols=53 Identities=26% Similarity=0.418 Sum_probs=46.8
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCCC-CCCCChhhHHHHHHHHHHHHHHHHH
Q 023847 156 DSHSLAERARREKISERMKILQDLVPGC-NKVIGKALVLDEIINYIQSLQRQVE 208 (276)
Q Consensus 156 ~~Hs~aERkRRekIne~~~~LrsLVP~~-~K~~dKAsIL~eAIdYIk~LQ~qV~ 208 (276)
..|+..||+|+..||+.|..|+++||.. ++.++|+.||..||+||.+||+.++
T Consensus 14 ~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 4699999999999999999999999964 2335999999999999999998653
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.04 E-value=2.4e-10 Score=83.54 Aligned_cols=52 Identities=23% Similarity=0.316 Sum_probs=46.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCCCC--CCCChhhHHHHHHHHHHHHHHHHH
Q 023847 157 SHSLAERARREKISERMKILQDLVPGCN--KVIGKALVLDEIINYIQSLQRQVE 208 (276)
Q Consensus 157 ~Hs~aERkRRekIne~~~~LrsLVP~~~--K~~dKAsIL~eAIdYIk~LQ~qV~ 208 (276)
.|+..||+|+..||+.|..|+.+||... +..+|+.||..||+||..||+.++
T Consensus 5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 5889999999999999999999999653 335999999999999999998764
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.99 E-value=3.6e-10 Score=104.56 Aligned_cols=57 Identities=21% Similarity=0.399 Sum_probs=41.7
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 023847 151 RGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQV 207 (276)
Q Consensus 151 r~~a~~~Hs~aERkRRekIne~~~~LrsLVP~~~K~~dKAsIL~eAIdYIk~LQ~qV 207 (276)
....+.+|+.+||+||++||+.|.+|++|||.....+||++||+.||+||+.|+...
T Consensus 9 ~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 9 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 344557899999999999999999999999944333499999999999999998753
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.91 E-value=4.5e-10 Score=105.31 Aligned_cols=56 Identities=30% Similarity=0.450 Sum_probs=48.2
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHhcCCC----CCCCCChhhHHHHHHHHHHHHHHH
Q 023847 150 RRGQATDSHSLAERARREKISERMKILQDLVPG----CNKVIGKALVLDEIINYIQSLQRQ 206 (276)
Q Consensus 150 rr~~a~~~Hs~aERkRRekIne~~~~LrsLVP~----~~K~~dKAsIL~eAIdYIk~LQ~q 206 (276)
|.++++++|+.+||+||++||+.|.+|+.|||. ..|+ ||++||+.||+||+.|+..
T Consensus 9 ~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~-dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 9 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCC-CHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCcccccc-CHHHHHHHHHHHHHHhhcc
Confidence 445556889999999999999999999999994 4565 9999999999999999853
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.90 E-value=2.9e-09 Score=82.88 Aligned_cols=50 Identities=30% Similarity=0.425 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCC---CChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023847 166 REKISERMKILQDLVPGCNKV---IGKALVLDEIINYIQSLQRQVEFLSMKLE 215 (276)
Q Consensus 166 RekIne~~~~LrsLVP~~~K~---~dKAsIL~eAIdYIk~LQ~qV~~Le~~le 215 (276)
|.+||++|.+|..|||.++.. .+|++||.+|||||++||.+++.+.++..
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~ 56 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 56 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999987531 49999999999999999998888876544
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.57 E-value=1.8e-08 Score=75.78 Aligned_cols=45 Identities=24% Similarity=0.447 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHH
Q 023847 161 AERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQR 205 (276)
Q Consensus 161 aERkRRekIne~~~~LrsLVP~~--~K~~dKAsIL~eAIdYIk~LQ~ 205 (276)
-||+|...||+.|..||.+||.. ++.++|..||+.||+||..||.
T Consensus 21 rER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 21 EPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 47888899999999999999965 2335999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.13 E-value=4.8e-06 Score=66.45 Aligned_cols=48 Identities=27% Similarity=0.414 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHHHHHH
Q 023847 162 ERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVEF 209 (276)
Q Consensus 162 ERkRRekIne~~~~LrsLVP~~--~K~~dKAsIL~eAIdYIk~LQ~qV~~ 209 (276)
||.|=..||+.|..|+.+||.. ++..+|..+|..||+||..||+.++.
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 5677788999999999999965 33459999999999999999987753
No 19
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=75.10 E-value=2.5 Score=29.60 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Q 023847 197 INYIQSLQRQVEFLSMKLEAVNSRM 221 (276)
Q Consensus 197 IdYIk~LQ~qV~~Le~~le~ln~~~ 221 (276)
-.||..|+.+++.|+..+..|.+.+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999988765
No 20
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=73.61 E-value=4.9 Score=28.71 Aligned_cols=45 Identities=16% Similarity=0.227 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023847 162 ERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSR 220 (276)
Q Consensus 162 ERkRRekIne~~~~LrsLVP~~~K~~dKAsIL~eAIdYIk~LQ~qV~~Le~~le~ln~~ 220 (276)
||++|.+..+++.+.++ . +.-.+||..|+.+|..|+.+...|...
T Consensus 1 Ekr~rrrerNR~AA~rc------R--------~rKk~~~~~Le~~v~~L~~~n~~L~~e 45 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC------R--------NRRRELTDTLQAETDQLEDEKSALQTE 45 (63)
T ss_dssp CHHHHHHHHHHHHHHHH------H--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH------H--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777766665 1 133455555555555555555444443
No 21
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=67.16 E-value=8.7 Score=28.38 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Q 023847 197 INYIQSLQRQVEFLSMKLEAVNSRM 221 (276)
Q Consensus 197 IdYIk~LQ~qV~~Le~~le~ln~~~ 221 (276)
..||+.|+.+|+.|+..|..+....
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~~~~ 71 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYGVDP 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 4599999999999999998876544
No 22
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=65.32 E-value=6.3 Score=27.78 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023847 191 LVLDEIINYIQSLQRQVEFLSMKLEAVNSR 220 (276)
Q Consensus 191 sIL~eAIdYIk~LQ~qV~~Le~~le~ln~~ 220 (276)
..|+..++-+..|..+++.|+.+++.++.+
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 468999999999999999999999887654
No 23
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=60.71 E-value=11 Score=29.00 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023847 193 LDEIINYIQSLQRQVEFLSMKLEAVNS 219 (276)
Q Consensus 193 L~eAIdYIk~LQ~qV~~Le~~le~ln~ 219 (276)
++.||+-|.-||.+|++|+++...|+.
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999988888888888776544
No 24
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=59.50 E-value=5 Score=28.26 Aligned_cols=22 Identities=9% Similarity=0.175 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 023847 197 INYIQSLQRQVEFLSMKLEAVN 218 (276)
Q Consensus 197 IdYIk~LQ~qV~~Le~~le~ln 218 (276)
-.||..|+.+|+.|+..|+.|.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3899999999999999887654
No 25
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=55.83 E-value=9 Score=26.11 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccC
Q 023847 198 NYIQSLQRQVEFLSMKLEAVNSRMN 222 (276)
Q Consensus 198 dYIk~LQ~qV~~Le~~le~ln~~~~ 222 (276)
-|+-.|+.+++.|+....+|+.+++
T Consensus 3 aYl~eLE~r~k~le~~naeLEervs 27 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLS 27 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3888888888888888888877763
No 26
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=53.47 E-value=10 Score=26.55 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Q 023847 198 NYIQSLQRQVEFLSMKLEAVNSRM 221 (276)
Q Consensus 198 dYIk~LQ~qV~~Le~~le~ln~~~ 221 (276)
.||..|+.+|..|+.+...|...+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~ 45 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEEL 45 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888887777777665554
No 27
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=46.28 E-value=43 Score=22.26 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=26.6
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023847 187 IGKALVLDEIINYIQSLQRQVEFLSMKLEAV 217 (276)
Q Consensus 187 ~dKAsIL~eAIdYIk~LQ~qV~~Le~~le~l 217 (276)
|..+..|+++-+-|..|+.+++.|+++.-+|
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999887654
No 28
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=44.74 E-value=30 Score=28.94 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHH
Q 023847 168 KISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSL 203 (276)
Q Consensus 168 kIne~~~~LrsLVP~~---~K~~dKAsIL~eAIdYIk~L 203 (276)
.|.-.|+.|+.+||.- ....-|-.||+.|.|+++.|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 4788999999999843 22348999999999998766
No 29
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=44.40 E-value=17 Score=26.11 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Q 023847 197 INYIQSLQRQVEFLSMKLEAVNSRM 221 (276)
Q Consensus 197 IdYIk~LQ~qV~~Le~~le~ln~~~ 221 (276)
.+||..|+.+|+.|+.+...|...+
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev 53 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEV 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666555554443
No 30
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=43.32 E-value=8 Score=27.66 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 023847 197 INYIQSLQRQVEFLSMKLEAVN 218 (276)
Q Consensus 197 IdYIk~LQ~qV~~Le~~le~ln 218 (276)
-.||..|+.+|+.|+..|..|.
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3789999999999987776654
No 31
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=41.66 E-value=21 Score=25.66 Aligned_cols=25 Identities=12% Similarity=0.100 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Q 023847 197 INYIQSLQRQVEFLSMKLEAVNSRM 221 (276)
Q Consensus 197 IdYIk~LQ~qV~~Le~~le~ln~~~ 221 (276)
..||..|+.+++.|+..+..+.+..
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~~~~ 68 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIFPRE 68 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCch
Confidence 4699999999999999998876644
No 32
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=40.30 E-value=25 Score=25.93 Aligned_cols=13 Identities=31% Similarity=0.445 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 023847 202 SLQRQVEFLSMKL 214 (276)
Q Consensus 202 ~LQ~qV~~Le~~l 214 (276)
.|+.+|..|..++
T Consensus 54 ~Lr~~i~~L~~El 66 (70)
T 1gd2_E 54 QLRQKVRQLEEEL 66 (70)
T ss_dssp HHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444333
No 33
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=39.11 E-value=23 Score=24.80 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023847 199 YIQSLQRQVEFLSMKLEA 216 (276)
Q Consensus 199 YIk~LQ~qV~~Le~~le~ 216 (276)
|+..|+.+|..|+.+...
T Consensus 23 ~~~~Le~~~~~L~~~n~~ 40 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQ 40 (61)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444433333
No 34
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=37.17 E-value=54 Score=22.13 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023847 193 LDEIINYIQSLQRQVEFLSMKLEAV 217 (276)
Q Consensus 193 L~eAIdYIk~LQ~qV~~Le~~le~l 217 (276)
+.+--+||+.|+++..+|+.-.+-|
T Consensus 5 vkelknyiqeleernaelknlkehl 29 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHL 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHH
Confidence 4567789999999988887654443
No 35
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=35.69 E-value=38 Score=23.79 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023847 198 NYIQSLQRQVEFLSMKLEAV 217 (276)
Q Consensus 198 dYIk~LQ~qV~~Le~~le~l 217 (276)
+||..|+.+|..|+.+...|
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L 41 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSEL 41 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333
No 36
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=31.74 E-value=37 Score=22.36 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023847 194 DEIINYIQSLQRQVEFLSMKLEA 216 (276)
Q Consensus 194 ~eAIdYIk~LQ~qV~~Le~~le~ 216 (276)
..-|+-|++|+++.+.|+.++..
T Consensus 16 AsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 16 ANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567788999999999887753
No 37
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=29.37 E-value=1.3e+02 Score=23.39 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=26.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023847 188 GKALVLDEIINYIQSLQRQVEFLSMKLEAVNSR 220 (276)
Q Consensus 188 dKAsIL~eAIdYIk~LQ~qV~~Le~~le~ln~~ 220 (276)
+-..-|.++..-|..|+.++..++.-|.+++.+
T Consensus 59 s~~~~L~e~~~kid~L~~el~K~q~~L~e~e~~ 91 (98)
T 2ke4_A 59 SLEPQIAETLSNIERLKLEVQKYEAWLAEAESR 91 (98)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 335668888888999999999999988888654
No 38
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=28.68 E-value=61 Score=19.56 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 023847 190 ALVLDEIINYIQSLQRQVE 208 (276)
Q Consensus 190 AsIL~eAIdYIk~LQ~qV~ 208 (276)
.+-|-+|-.|+.+|++.++
T Consensus 3 vsgliearkyleqlhrklk 21 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 3557788899999988765
No 39
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=27.84 E-value=47 Score=20.23 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 023847 199 YIQSLQRQVEFLSMKLEAVN 218 (276)
Q Consensus 199 YIk~LQ~qV~~Le~~le~ln 218 (276)
|+-+|+.+|-+|+-++.+|.
T Consensus 1 yvyqlkdevgelkgevralk 20 (27)
T 3v86_A 1 YVYQLKDEVGELKGEVRALK 20 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHhHHHHHH
Confidence 45566666666666665554
No 40
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=25.70 E-value=61 Score=24.76 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023847 194 DEIINYIQSLQRQVEFLSMKLEAVNS 219 (276)
Q Consensus 194 ~eAIdYIk~LQ~qV~~Le~~le~ln~ 219 (276)
..=|+-|++|+++.+.|+.+++.+..
T Consensus 19 AsyIdKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 19 ANLIDKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34466789999999999988887754
No 41
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=22.61 E-value=1.5e+02 Score=22.18 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=18.9
Q ss_pred hhHHHHHHHHH----HHHHHHHHHHHHHHHHHhccc
Q 023847 190 ALVLDEIINYI----QSLQRQVEFLSMKLEAVNSRM 221 (276)
Q Consensus 190 AsIL~eAIdYI----k~LQ~qV~~Le~~le~ln~~~ 221 (276)
..-++..++++ ..|+.+|+.|+.++..|..-+
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445554 456777777777777666544
No 42
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=22.36 E-value=46 Score=30.97 Aligned_cols=53 Identities=13% Similarity=0.094 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhcCCCCCCC----CChhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Q 023847 167 EKISERMKILQDLVPGCNKV----IGKALVLDEIINYI-QSLQRQVEFLSMKLEAVNS 219 (276)
Q Consensus 167 ekIne~~~~LrsLVP~~~K~----~dKAsIL~eAIdYI-k~LQ~qV~~Le~~le~ln~ 219 (276)
.-|..+|..++.=+|...++ ......|++.++-- -+-+.+|++|+.++..+|.
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (471)
T 3mq9_A 400 HLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNH 457 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44777777777776644332 12344455554431 1122334444444444443
No 43
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=21.92 E-value=63 Score=24.86 Aligned_cols=22 Identities=14% Similarity=0.483 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccc
Q 023847 200 IQSLQRQVEFLSMKLEAVNSRM 221 (276)
Q Consensus 200 Ik~LQ~qV~~Le~~le~ln~~~ 221 (276)
+++.-.+++.|..++++||+.+
T Consensus 65 L~~sn~kl~~L~~eL~eL~a~~ 86 (86)
T 1cxz_B 65 LRGSSRRLDLLHQQLQELHAHV 86 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhcCCC
Confidence 4667778888888888887653
No 44
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=21.68 E-value=75 Score=25.91 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=20.6
Q ss_pred cCCCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 023847 179 LVPGCNKVIGKALVLDEIINYIQSLQRQVEF 209 (276)
Q Consensus 179 LVP~~~K~~dKAsIL~eAIdYIk~LQ~qV~~ 209 (276)
++|+=....+ ...|+.+++|++.++++|++
T Consensus 192 i~pgHg~~~~-~~~l~~~~~~l~~~~~~~~~ 221 (223)
T 1m2x_A 192 VVAGHDDWKD-QRSIQHTLDLINEYQQKQKA 221 (223)
T ss_dssp EEESBSCCCS-TTHHHHHHHHHHHHHHTC--
T ss_pred EEeCCCCcCC-HHHHHHHHHHHHHHHHHHhc
Confidence 4554444333 56899999999999998864
No 45
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=20.76 E-value=95 Score=23.73 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 023847 201 QSLQRQVEFLSMKLEAVNS 219 (276)
Q Consensus 201 k~LQ~qV~~Le~~le~ln~ 219 (276)
+++-++|.+|++.+.+||.
T Consensus 55 ~QideeV~~LKe~IdaLNK 73 (83)
T 1zke_A 55 TQLSEEVERLKELINALNK 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7778899999999888875
Done!