Query 023849
Match_columns 276
No_of_seqs 276 out of 1883
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 13:49:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023849.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023849hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 99.9 5.1E-24 1.7E-28 186.1 18.1 181 47-244 24-235 (438)
2 1pw4_A Glycerol-3-phosphate tr 99.9 1.4E-24 4.8E-29 190.3 14.4 182 47-246 26-213 (451)
3 4gc0_A D-xylose-proton symport 99.9 4.5E-23 1.5E-27 182.9 12.5 179 51-247 14-227 (491)
4 2gfp_A EMRD, multidrug resista 99.9 1.1E-22 3.7E-27 174.5 12.8 157 89-245 23-180 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.9 5.2E-22 1.8E-26 176.1 16.1 153 90-242 38-199 (491)
6 2xut_A Proton/peptide symporte 99.8 6.6E-20 2.3E-24 163.9 18.4 150 90-239 37-198 (524)
7 1pw4_A Glycerol-3-phosphate tr 99.7 9.1E-16 3.1E-20 134.1 18.1 149 91-239 278-433 (451)
8 2cfq_A Lactose permease; trans 99.6 9.3E-15 3.2E-19 127.1 14.7 143 100-242 258-402 (417)
9 2cfq_A Lactose permease; trans 99.6 2.7E-16 9.4E-21 136.8 4.1 145 91-235 33-183 (417)
10 3o7q_A L-fucose-proton symport 99.6 1.6E-14 5.5E-19 125.8 13.1 136 92-230 286-423 (438)
11 4aps_A DI-OR tripeptide H+ sym 99.6 1.4E-14 4.9E-19 128.2 10.8 152 91-242 309-474 (491)
12 4gc0_A D-xylose-proton symport 99.5 9.6E-13 3.3E-17 116.3 18.2 157 90-246 301-469 (491)
13 2gfp_A EMRD, multidrug resista 99.3 6.2E-12 2.1E-16 107.3 6.9 132 91-225 225-362 (375)
14 2xut_A Proton/peptide symporte 99.1 2.3E-10 7.7E-15 102.0 8.0 141 102-242 336-505 (524)
15 2g9p_A Antimicrobial peptide l 69.1 2 6.8E-05 19.7 1.0 14 120-133 2-15 (26)
16 2i68_A Protein EMRE; transmemb 42.0 86 0.0029 21.9 7.5 21 200-220 65-87 (137)
17 4dve_A Biotin transporter BIOY 40.0 76 0.0026 23.8 6.1 25 107-131 99-123 (198)
18 4ev6_A Magnesium transport pro 34.1 50 0.0017 27.0 4.7 24 216-239 309-332 (339)
19 4aw6_A CAAX prenyl protease 1 30.5 2.3E+02 0.0079 24.6 8.4 60 91-150 148-214 (482)
20 2iub_A CORA, divalent cation t 28.7 47 0.0016 27.5 3.7 24 216-239 333-356 (363)
21 2dw3_A Intrinsic membrane prot 28.0 1.1E+02 0.0038 18.9 4.9 30 218-247 32-61 (77)
22 1j4n_A Aquaporin 1; membrane p 22.1 1.4E+02 0.0046 23.7 5.0 25 215-239 207-231 (271)
23 1ldf_A Glycerol uptake facilit 21.1 1.5E+02 0.0053 23.4 5.2 21 218-238 232-252 (281)
24 2b6o_A Aquaporin-0, lens fiber 20.3 1.6E+02 0.0055 23.1 5.1 25 215-239 197-221 (263)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.92 E-value=5.1e-24 Score=186.15 Aligned_cols=181 Identities=18% Similarity=0.182 Sum_probs=154.9
Q ss_pred hhhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhh
Q 023849 47 PGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLAR 126 (276)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d 126 (276)
.++.+.++++.++...++...++. .+|.+.+++|++..+.+++.+.+.++..++++++|+++|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~d 86 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDI-----------------LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMK 86 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHH-----------------HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344555556666666666555543 347899999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhh
Q 023849 127 SVNPFRLIGVGLTVWTLAVVGC---GFSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGY 203 (276)
Q Consensus 127 ~~grr~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~ 203 (276)
|+|||+++.++.++.+++.+++ .++++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.
T Consensus 87 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 166 (438)
T 3o7q_A 87 KLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGA 166 (438)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 8889999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhc-cc-c-------------------------hhHHHHHhHHHHHHHHHHHHhh-ccccc
Q 023849 204 AIGYVYGGWVG-HY-N-------------------------WRYAFWGEAILMFPFAVLGFVM-KPLQL 244 (276)
Q Consensus 204 ~~g~~~~~~l~-~~-~-------------------------w~~~~~~~~~~~~~~~~~~~~~-~~~~~ 244 (276)
+++|.+++.+. .. + ||+.|++.+++.++..++.++. .|+++
T Consensus 167 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~ 235 (438)
T 3o7q_A 167 IIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQ 235 (438)
T ss_dssp HHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCT
T ss_pred HHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 99999998886 33 2 9999988887776666555444 34433
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.92 E-value=1.4e-24 Score=190.26 Aligned_cols=182 Identities=15% Similarity=0.087 Sum_probs=161.1
Q ss_pred hhhHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhh
Q 023849 47 PGRLLVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLAR 126 (276)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d 126 (276)
+++.+..+++..+...++...+.. .+|.+.+++ .+..+.+++.+++.++..++++++|+++|
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~d 87 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFAL-----------------AMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSD 87 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHH-----------------HHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 345566666677777766666554 347888999 99999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhh
Q 023849 127 SVNPFRLIGVGLTVWTLAVVGCGF----SFSFWMIAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSG 202 (276)
Q Consensus 127 ~~grr~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g 202 (276)
|+|||+++.++.++.+++.+++++ +++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|
T Consensus 88 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g 167 (451)
T 1pw4_A 88 RSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG 167 (451)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHH
T ss_pred hcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhc-ccc-hhHHHHHhHHHHHHHHHHHHhhcccccCC
Q 023849 203 YAIGYVYGGWVG-HYN-WRYAFWGEAILMFPFAVLGFVMKPLQLKG 246 (276)
Q Consensus 203 ~~~g~~~~~~l~-~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (276)
.+++|.+++++. ..+ ||+.|++.+++.++..++.+++.||+++.
T Consensus 168 ~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 213 (451)
T 1pw4_A 168 GGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQS 213 (451)
T ss_dssp HTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhh
Confidence 999999999877 778 99999999988877777766666665543
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.89 E-value=4.5e-23 Score=182.87 Aligned_cols=179 Identities=16% Similarity=0.212 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCCccccccccCC--------CchhHHHHHHHHHHHHHHHHhHHH
Q 023849 51 LVIFCFINLLNYVDRGTIASNGVNGSPKNCSANGTCTPGTGIQGDFDL--------NNFQDGVLSSAFMVGLLVASPIFA 122 (276)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~i~~~~~g 122 (276)
.++++++.++.++|...++. ++|.+.++++. +..+.+++.+.+.+|.++|++++|
T Consensus 14 ~~~a~lg~~~~Gyd~~~i~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G 76 (491)
T 4gc0_A 14 TLVATLGGLLFGYDTAVISG-----------------TVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGG 76 (491)
T ss_dssp HHHHHHHHHHHHHHHHGGGG-----------------THHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666777788777764 34677766642 345678999999999999999999
Q ss_pred HhhhccCChhhHHHHHHHHHHHHHHHh------------------hhhhHHHHHHHHHHHHhhhhhhhhcHHHHHhhcCc
Q 023849 123 SLARSVNPFRLIGVGLTVWTLAVVGCG------------------FSFSFWMIAICRMLVGVGEASFISLAAPFIDDNAP 184 (276)
Q Consensus 123 ~l~d~~grr~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~ 184 (276)
+++||+|||+++.++.+++.++.++++ ++++++.++++|+++|++.|...+....+++|+.|
T Consensus 77 ~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p 156 (491)
T 4gc0_A 77 YCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAP 156 (491)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999888 47899999999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHhhhhhhHHHHHHHhhc---------ccchhHHHHHhHHHHHHHHHHHHhhcccccCCC
Q 023849 185 VAKKTAWLGVFYMCLPSGYAIGYVYGGWVG---------HYNWRYAFWGEAILMFPFAVLGFVMKPLQLKGF 247 (276)
Q Consensus 185 ~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~---------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (276)
+++|++..++.+.+..+|.++++.++..+. ..+||+.+.+..+..++. ++..++.||++++.
T Consensus 157 ~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~peSp~~L 227 (491)
T 4gc0_A 157 AHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF-LMLLYTVPESPRWL 227 (491)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH-HHHGGGSCCCHHHH
T ss_pred HHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh-hhhhhcCCCChHHH
Confidence 999999999999999999999988876654 235888777776665444 34445578887654
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.89 E-value=1.1e-22 Score=174.46 Aligned_cols=157 Identities=14% Similarity=0.146 Sum_probs=144.7
Q ss_pred ccccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 023849 89 GTGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGE 168 (276)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~ 168 (276)
+|.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||+++.++.++.+++.+++.++++++.+++.|++.|++.
T Consensus 23 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~ 102 (375)
T 2gfp_A 23 IADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGT 102 (375)
T ss_dssp HHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhcccccC
Q 023849 169 ASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPLQLK 245 (276)
Q Consensus 169 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (276)
+...+...+++.|++|+++|++++++.+....+|..++|.+++++. ..+||+.|++.+++.++..+...+..||+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 103 GVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred HhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence 9999999999999999999999999999999999999999999998 7799999999888776665545555566543
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.88 E-value=5.2e-22 Score=176.10 Aligned_cols=153 Identities=12% Similarity=0.038 Sum_probs=138.9
Q ss_pred cccccc-----cCCCchhHHHHHHHHHHHHHHHHhHHHHhhhc-cCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 023849 90 TGIQGD-----FDLNNFQDGVLSSAFMVGLLVASPIFASLARS-VNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRML 163 (276)
Q Consensus 90 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l 163 (276)
+++.++ +|++..+.+++.+.+.++..+++++.|+++|| +|||+++.++.++.+++.++++++++++.++++|++
T Consensus 38 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 117 (491)
T 4aps_A 38 YYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIIL 117 (491)
T ss_dssp HHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHH
T ss_pred HHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 355555 99999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred HHhhhhhhhhcHHHHHhhcCcchh--hhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhc
Q 023849 164 VGVGEASFISLAAPFIDDNAPVAK--KTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMK 240 (276)
Q Consensus 164 ~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~ 240 (276)
.|++.+...+...+++.|++|+++ |+.++++++...++|..++|.+++.+. ..|||+.|++.++..++..+..++..
T Consensus 118 ~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 197 (491)
T 4aps_A 118 IIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGG 197 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999988 788888899999999999999999998 78999999998877766666555444
Q ss_pred cc
Q 023849 241 PL 242 (276)
Q Consensus 241 ~~ 242 (276)
++
T Consensus 198 ~~ 199 (491)
T 4aps_A 198 KK 199 (491)
T ss_dssp HT
T ss_pred cc
Confidence 43
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.84 E-value=6.6e-20 Score=163.90 Aligned_cols=150 Identities=14% Similarity=0.102 Sum_probs=135.8
Q ss_pred cccccccC------CCchhHHHHHHHHHHHHHHHHhHHHHhhhcc-CChhhHHHHHHHHHHHHHHHhhhh-hHHHHHHHH
Q 023849 90 TGIQGDFD------LNNFQDGVLSSAFMVGLLVASPIFASLARSV-NPFRLIGVGLTVWTLAVVGCGFSF-SFWMIAICR 161 (276)
Q Consensus 90 ~~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r 161 (276)
+++.+++| ++..+.+++.+.+.++..+++++.|+++||+ |||+++.++.++.+++.+++++++ +++.++++|
T Consensus 37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (524)
T 2xut_A 37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGL 116 (524)
T ss_dssp HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 36677888 9999999999999999999999999999999 999999999999999999999999 999999999
Q ss_pred HHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHH---HHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHH
Q 023849 162 MLVGVGEASFISLAAPFIDDNAPVAKKTAWLGV---FYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGF 237 (276)
Q Consensus 162 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~ 237 (276)
++.|++.+...+...+++.|++|+++|+++.+. .+.+.++|.+++|.+++++. ..+|++.|++.+++.++..+..+
T Consensus 117 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 117 FLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999776666 89999999999999999988 78999999998887665555444
Q ss_pred hh
Q 023849 238 VM 239 (276)
Q Consensus 238 ~~ 239 (276)
+.
T Consensus 197 ~~ 198 (524)
T 2xut_A 197 LG 198 (524)
T ss_dssp SS
T ss_pred Hh
Confidence 43
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.69 E-value=9.1e-16 Score=134.14 Aligned_cols=149 Identities=11% Similarity=-0.003 Sum_probs=131.0
Q ss_pred ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhcc--CChhhHHHHHHHHH-HHHHHHhhh--hhHHHHHHHHHHHH
Q 023849 91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSV--NPFRLIGVGLTVWT-LAVVGCGFS--FSFWMIAICRMLVG 165 (276)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--grr~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~r~l~G 165 (276)
++++.+|.+..+.+++.+.+.++.+++.++.|++.||+ |||+.+.++..+.. ++.++..+. .+.+.+.+..++.|
T Consensus 278 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 357 (451)
T 1pw4_A 278 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG 357 (451)
T ss_dssp HBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence 44555899999999999999999999999999999999 99999988887776 677776666 36788888889999
Q ss_pred hhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhh-hhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhh
Q 023849 166 VGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPS-GYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVM 239 (276)
Q Consensus 166 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~ 239 (276)
++.+...+....++.|.+|+++|++++|+.+....+ |..++|.+.+.+. ..||++.|++.+++.++..++.++.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 358 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 998998898899999999999999999999999999 9999999999998 7899999999888877766665554
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.61 E-value=9.3e-15 Score=127.06 Aligned_cols=143 Identities=10% Similarity=0.037 Sum_probs=122.3
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhcHHHHH
Q 023849 100 NFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASFISLAAPFI 179 (276)
Q Consensus 100 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i 179 (276)
....+++.++..++.+++.++.|++.||+|||+++.++.++.+++.++.++.++.+.+++..++.+++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568888888888999999999999999999999999988888888888888888888888888888777777778899
Q ss_pred hhcCcchhhhHHHHH-HHHHhhhhhhHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhhccc
Q 023849 180 DDNAPVAKKTAWLGV-FYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGEAILMFPFAVLGFVMKPL 242 (276)
Q Consensus 180 ~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 242 (276)
.|.+|++.|+++.++ ++....+|.+++|.++|++. ..|++..|.+.+++.++..++.+++.|+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 999999999999998 48888899999999999888 7789999998888877766665555554
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.60 E-value=2.7e-16 Score=136.76 Aligned_cols=145 Identities=17% Similarity=0.137 Sum_probs=106.8
Q ss_pred ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHH---HHHhhhhhHH-HHHHHHHHHHh
Q 023849 91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAV---VGCGFSFSFW-MIAICRMLVGV 166 (276)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~r~l~G~ 166 (276)
++++++|++..+.|++.+.+.++..++++++|+++||+|||+++.++..+.++.. ..+.+++... .+..++++.|+
T Consensus 33 ~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (417)
T 2cfq_A 33 WLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGI 112 (417)
T ss_dssp HHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667799999999999999999999999999999999999999998887765422 2223333221 23455666666
Q ss_pred hhhhhhhcHHHHHhhcCcc--hhhhHHHHHHHHHhhhhhhHHHHHHHhhcccchhHHHHHhHHHHHHHHHH
Q 023849 167 GEASFISLAAPFIDDNAPV--AKKTAWLGVFYMCLPSGYAIGYVYGGWVGHYNWRYAFWGEAILMFPFAVL 235 (276)
Q Consensus 167 ~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~w~~~~~~~~~~~~~~~~~ 235 (276)
+.+..++.....+.++.++ ++++...+.......+|..++|.+++++...+|++.|++.++..++..+.
T Consensus 113 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~ 183 (417)
T 2cfq_A 113 YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVL 183 (417)
T ss_dssp STTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence 5555555545555555443 45677788888888999999999999988668999999887765444333
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.58 E-value=1.6e-14 Score=125.80 Aligned_cols=136 Identities=10% Similarity=-0.102 Sum_probs=117.7
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh
Q 023849 92 IQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSFSFWMIAICRMLVGVGEASF 171 (276)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~ 171 (276)
+++.+|.+..+.+++.+.+.++..++.++.|++.||+|||+++.++.++.+++.++..+.++.+.++.. ++.|++.+..
T Consensus 286 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~ 364 (438)
T 3o7q_A 286 VEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQ 364 (438)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTH
T ss_pred hhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHH
Confidence 556679999999999999999999999999999999999999999999999998888888877665444 8889999999
Q ss_pred hhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccc-hhHHHHHhHHHHH
Q 023849 172 ISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYN-WRYAFWGEAILMF 230 (276)
Q Consensus 172 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~-w~~~~~~~~~~~~ 230 (276)
.+...+++.|.+|++ ++.+.++.. ...+|..++|.+.+++. ..| ++..|++.++..+
T Consensus 365 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 423 (438)
T 3o7q_A 365 YPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFA 423 (438)
T ss_dssp HHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHH
T ss_pred HHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999999999966 888888777 56799999999999998 667 9998887655443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.56 E-value=1.4e-14 Score=128.18 Aligned_cols=152 Identities=14% Similarity=0.044 Sum_probs=123.8
Q ss_pred ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHH-----HHHHHHHHHHHHHhhhh---------hHHH
Q 023849 91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIG-----VGLTVWTLAVVGCGFSF---------SFWM 156 (276)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~-----~~~~~~~~~~~~~~~~~---------~~~~ 156 (276)
+..+.++.+..+.+++.+...++..++.++.|++.||+|||+... ++.++.+++.++..+.. +.+.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (491)
T 4aps_A 309 FAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLW 388 (491)
T ss_dssp HHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHH
T ss_pred HHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHH
Confidence 344556666667788888999999999999999999999987655 77777777777666643 6777
Q ss_pred HHHHHHHHHhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhcccchhHHHHHhHHHHHHHHHHH
Q 023849 157 IAICRMLVGVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVGHYNWRYAFWGEAILMFPFAVLG 236 (276)
Q Consensus 157 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~w~~~~~~~~~~~~~~~~~~ 236 (276)
+.+..++.|++.+...+....++.|.+|+++|+++.|+.+....+|..+++.+.+.+...++.+.|++.+++.++..++.
T Consensus 389 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (491)
T 4aps_A 389 LVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVL 468 (491)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999899999999999999999999999999999999999999998886678888888888877777766
Q ss_pred Hhhccc
Q 023849 237 FVMKPL 242 (276)
Q Consensus 237 ~~~~~~ 242 (276)
+++.++
T Consensus 469 ~~~~~~ 474 (491)
T 4aps_A 469 VFLSKR 474 (491)
T ss_dssp HHC---
T ss_pred HHHHHH
Confidence 666544
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.50 E-value=9.6e-13 Score=116.33 Aligned_cols=157 Identities=9% Similarity=-0.013 Sum_probs=117.5
Q ss_pred cccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHH-
Q 023849 90 TGIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTVWTLAVVGCGFSF----SFWMIAICRMLV- 164 (276)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~r~l~- 164 (276)
+.+.+..+.+............+...++.++.+++.||+|||+.++.+.....++.+..+... .....++..++.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 380 (491)
T 4gc0_A 301 PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV 380 (491)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 466677777777777778888888999999999999999999999998888877766554331 112222222222
Q ss_pred HhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-------ccchhHHHHHhHHHHHHHHHHHH
Q 023849 165 GVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-------HYNWRYAFWGEAILMFPFAVLGF 237 (276)
Q Consensus 165 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-------~~~w~~~~~~~~~~~~~~~~~~~ 237 (276)
+.......+....+.+|.+|.+.|++++|+......+|..+++.+.+.+. ..++.++|++.++++++..++.+
T Consensus 381 ~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~ 460 (491)
T 4gc0_A 381 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW 460 (491)
T ss_dssp HHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 22222334667789999999999999999999999999998887765553 34567788898998888888888
Q ss_pred hhcccccCC
Q 023849 238 VMKPLQLKG 246 (276)
Q Consensus 238 ~~~~~~~~~ 246 (276)
++.||++..
T Consensus 461 ~~~PETkg~ 469 (491)
T 4gc0_A 461 KFVPETKGK 469 (491)
T ss_dssp HHCCCCTTC
T ss_pred heecCCCCC
Confidence 888987644
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.26 E-value=6.2e-12 Score=107.31 Aligned_cols=132 Identities=7% Similarity=-0.016 Sum_probs=105.4
Q ss_pred ccccccCCCchhHHHHHHHHHHHHHHHHhHHHHhhhccCChhhHHHHHHH-HHHHHHH--Hhh--hhhHHHHHHHHHHHH
Q 023849 91 GIQGDFDLNNFQDGVLSSAFMVGLLVASPIFASLARSVNPFRLIGVGLTV-WTLAVVG--CGF--SFSFWMIAICRMLVG 165 (276)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~-~~~~~~~--~~~--~~~~~~~~~~r~l~G 165 (276)
++++++|.++.+.+++.+...++..++.++.+++.||++++ +..+..+ ..++..+ ... .++.+.+++..++.|
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 302 (375)
T 2gfp_A 225 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFF 302 (375)
T ss_dssp SSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHH
Confidence 44555899999999999999999999999999999999873 3333333 2222221 122 236777788889999
Q ss_pred hhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-ccchhHHHHHh
Q 023849 166 VGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HYNWRYAFWGE 225 (276)
Q Consensus 166 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~w~~~~~~~ 225 (276)
++.+...+....++.|.+| ++|+++.++.+....+|..++|.+.+.+. ..+|+..+++.
T Consensus 303 ~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 303 FGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp HHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 9999999999999999998 89999999999999999999999998887 66777777664
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.07 E-value=2.3e-10 Score=101.99 Aligned_cols=141 Identities=13% Similarity=0.124 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHhh----hccCC----hhhHHHHHHHHHHHHHHHhhh---------hhHHHHHHHHHHH
Q 023849 102 QDGVLSSAFMVGLLVASPIFASLA----RSVNP----FRLIGVGLTVWTLAVVGCGFS---------FSFWMIAICRMLV 164 (276)
Q Consensus 102 ~~~~~~~~~~~~~~i~~~~~g~l~----d~~gr----r~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~r~l~ 164 (276)
..+++.....++..++.++.+++. +|.|+ ++.+.++.++.+++.++.++. .+.+.+++..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 356666666677777777777764 55443 356677888888888777664 3667788889999
Q ss_pred HhhhhhhhhcHHHHHhhcCcchhhhHHHHHHHHHhhhhhhHHHHHHHhhc-cc--ch---------hHHHHHhHHHHHHH
Q 023849 165 GVGEASFISLAAPFIDDNAPVAKKTAWLGVFYMCLPSGYAIGYVYGGWVG-HY--NW---------RYAFWGEAILMFPF 232 (276)
Q Consensus 165 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~--~w---------~~~~~~~~~~~~~~ 232 (276)
|++.+...+....++.|.+|+++|++++|+.+....+|..++|.+.+.+. .. +| +..|++.+++.++.
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA 495 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887 22 34 33466666666665
Q ss_pred HHHHHhhccc
Q 023849 233 AVLGFVMKPL 242 (276)
Q Consensus 233 ~~~~~~~~~~ 242 (276)
.++.+++.++
T Consensus 496 ~~~~~~~~~~ 505 (524)
T 2xut_A 496 AIVFALYARS 505 (524)
T ss_dssp HHHHC-----
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=69.05 E-value=2 Score=19.70 Aligned_cols=14 Identities=14% Similarity=0.356 Sum_probs=11.5
Q ss_pred HHHHhhhccCChhh
Q 023849 120 IFASLARSVNPFRL 133 (276)
Q Consensus 120 ~~g~l~d~~grr~~ 133 (276)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999865
No 16
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=42.03 E-value=86 Score=21.89 Aligned_cols=21 Identities=5% Similarity=-0.189 Sum_probs=7.8
Q ss_pred hhhhhHHHHHHHhhc--ccchhH
Q 023849 200 PSGYAIGYVYGGWVG--HYNWRY 220 (276)
Q Consensus 200 ~~g~~~g~~~~~~l~--~~~w~~ 220 (276)
.++.++..+++-.+. ..+|+-
T Consensus 65 ~l~pv~~~l~g~l~lgE~ls~~~ 87 (137)
T 2i68_A 65 GVGIVLISLLSWGFFGQRLDLPA 87 (137)
T ss_dssp HHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHHHHHHHHhCCCCCHHH
Confidence 445555555554443 344443
No 17
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=39.95 E-value=76 Score=23.85 Aligned_cols=25 Identities=8% Similarity=0.183 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhHHHHhhhccCCh
Q 023849 107 SSAFMVGLLVASPIFASLARSVNPF 131 (276)
Q Consensus 107 ~~~~~~~~~i~~~~~g~l~d~~grr 131 (276)
..-|.+|+.++..+.|++.+|..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 3456677778888888888886543
No 18
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=34.12 E-value=50 Score=27.02 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=14.6
Q ss_pred cchhHHHHHhHHHHHHHHHHHHhh
Q 023849 216 YNWRYAFWGEAILMFPFAVLGFVM 239 (276)
Q Consensus 216 ~~w~~~~~~~~~~~~~~~~~~~~~ 239 (276)
..|++.|++..++.++++++.+++
T Consensus 309 l~~~~gy~~~l~~m~~~~~~~~~~ 332 (339)
T 4ev6_A 309 ANNPQGFWLVMALMVVIIMIFVYI 332 (339)
T ss_dssp SSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHH
Confidence 368888877666555555544443
No 19
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=30.48 E-value=2.3e+02 Score=24.56 Aligned_cols=60 Identities=13% Similarity=0.105 Sum_probs=32.4
Q ss_pred ccccccCCCchhHHHHHHHH----HHHHHHHHhHHH---HhhhccCChhhHHHHHHHHHHHHHHHhh
Q 023849 91 GIQGDFDLNNFQDGVLSSAF----MVGLLVASPIFA---SLARSVNPFRLIGVGLTVWTLAVVGCGF 150 (276)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~g---~l~d~~grr~~~~~~~~~~~~~~~~~~~ 150 (276)
.+.+.+|++....+....=. .++.+++.++.. ++.++.|+.+.+....+..++..++..+
T Consensus 148 vle~~~Gfnk~t~~~f~~D~~k~~~l~~vi~~pl~~~~~~ii~~~g~~~wl~~w~~~~~~~l~~~~i 214 (482)
T 4aw6_A 148 VIEEKHGFNQQTLGFFMKDAIKKFVVTQCILLPVSSLLLYIIKIGGDYFFIYAWLFTLVVSLVLVTI 214 (482)
T ss_dssp THHHHTTCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHH
T ss_pred eehhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH
Confidence 45678998876665543322 222333332222 4577888887765555555544444433
No 20
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=28.71 E-value=47 Score=27.53 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=10.0
Q ss_pred cchhHHHHHhHHHHHHHHHHHHhh
Q 023849 216 YNWRYAFWGEAILMFPFAVLGFVM 239 (276)
Q Consensus 216 ~~w~~~~~~~~~~~~~~~~~~~~~ 239 (276)
..|+|.|++..++.++++++.+++
T Consensus 333 l~~~~Gy~~~l~~m~~i~~~~~~~ 356 (363)
T 2iub_A 333 LRWKWGYPVVLAVMGVIAVIMVVY 356 (363)
T ss_dssp ------CHHHHHHHHHHHHHHHTT
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHH
Confidence 358888776655555555444444
No 21
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=28.01 E-value=1.1e+02 Score=18.91 Aligned_cols=30 Identities=20% Similarity=0.239 Sum_probs=12.3
Q ss_pred hhHHHHHhHHHHHHHHHHHHhhcccccCCC
Q 023849 218 WRYAFWGEAILMFPFAVLGFVMKPLQLKGF 247 (276)
Q Consensus 218 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (276)
|-.++.+...+.++.+-++-.++||..+..
T Consensus 32 ~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~a 61 (77)
T 2dw3_A 32 WAGGVFFGTLLLIGFFRVVGRMLPIQENQA 61 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTTCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchhcccC
Confidence 333333333333333333333467655443
No 22
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=22.09 E-value=1.4e+02 Score=23.66 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=16.5
Q ss_pred ccchhHHHHHhHHHHHHHHHHHHhh
Q 023849 215 HYNWRYAFWGEAILMFPFAVLGFVM 239 (276)
Q Consensus 215 ~~~w~~~~~~~~~~~~~~~~~~~~~ 239 (276)
.+.+.|.|++.-+++.++..+++-+
T Consensus 207 ~~~~~wv~~vgP~~Ga~la~~~y~~ 231 (271)
T 1j4n_A 207 NFQDHWIFWVGPFIGAALAVLIYDF 231 (271)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHHHHT
T ss_pred CCcceeHHHHHHHHHHHHHHHHHHH
Confidence 4566788888777766666555443
No 23
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=21.12 E-value=1.5e+02 Score=23.44 Aligned_cols=21 Identities=5% Similarity=-0.085 Sum_probs=14.6
Q ss_pred hhHHHHHhHHHHHHHHHHHHh
Q 023849 218 WRYAFWGEAILMFPFAVLGFV 238 (276)
Q Consensus 218 w~~~~~~~~~~~~~~~~~~~~ 238 (276)
|.|+|++.-++..++..+++.
T Consensus 232 ~~WVy~vgPi~Ga~la~~~y~ 252 (281)
T 1ldf_A 232 YFLVPLFGPIVGAIVGAFAYR 252 (281)
T ss_dssp TTHHHHHHHHHHHHHHHHHHH
T ss_pred eeeHHhHHHHHHHHHHHHHHH
Confidence 568888887777666655543
No 24
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=20.29 E-value=1.6e+02 Score=23.08 Aligned_cols=25 Identities=8% Similarity=0.360 Sum_probs=17.0
Q ss_pred ccchhHHHHHhHHHHHHHHHHHHhh
Q 023849 215 HYNWRYAFWGEAILMFPFAVLGFVM 239 (276)
Q Consensus 215 ~~~w~~~~~~~~~~~~~~~~~~~~~ 239 (276)
.+.+.|.|++.-+++.++..+++.+
T Consensus 197 ~~~~~Wvy~vgP~~Ga~la~~~y~~ 221 (263)
T 2b6o_A 197 NFTNHWVYWVGPVIGAGLGSLLYDF 221 (263)
T ss_dssp CCTTCTHHHHHHHHHHHHHHHHHHT
T ss_pred CccceeHHHHHHHHHHHHHHHHHHH
Confidence 4566788888877776666655543
Done!