Query 023851
Match_columns 276
No_of_seqs 95 out of 113
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 13:51:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023851.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023851hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dve_B Voltage-dependent N-typ 52.8 4.9 0.00017 24.3 1.0 19 106-124 1-19 (23)
2 3dvk_B Voltage-dependent R-typ 48.7 8.8 0.0003 23.2 1.7 19 106-124 2-20 (23)
3 3bxl_B CAM, voltage-dependent 38.2 18 0.00061 22.5 1.9 20 109-128 1-20 (26)
4 3g43_E Voltage-dependent L-typ 33.2 13 0.00045 28.6 0.9 20 103-122 56-75 (81)
5 2f6m_A Suppressor protein STP2 31.0 47 0.0016 24.4 3.6 22 7-30 4-25 (65)
6 2xf7_A GP23.1; viral protein; 26.1 16 0.00056 25.6 0.3 21 114-134 4-24 (51)
7 2qsr_A Transcription-repair co 16.8 48 0.0016 27.8 1.4 21 5-25 31-51 (173)
8 2kbv_A Sodium/hydrogen exchang 14.7 44 0.0015 20.8 0.4 22 239-264 5-27 (28)
9 3zym_A Phosphatidylinositol-bi 13.4 2.1E+02 0.0073 26.0 4.9 67 9-87 227-306 (310)
10 3s1b_A Mini-Z; VEGF, cystine k 11.7 91 0.0031 20.0 1.3 10 6-15 19-28 (34)
No 1
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=52.80 E-value=4.9 Score=24.32 Aligned_cols=19 Identities=21% Similarity=0.787 Sum_probs=15.7
Q ss_pred hhhhHHHHHhhhhHhhhhh
Q 023851 106 RLGRVYVASILYGYFLKSA 124 (276)
Q Consensus 106 ~Lg~vyAAsmM~GYFLr~~ 124 (276)
.+|++||+=|++-||=++-
T Consensus 1 ~VGKiYAallI~d~~r~~k 19 (23)
T 3dve_B 1 HMGKVYAALMIFDFYKQNK 19 (26)
T ss_dssp CCHHHHHHHHHHHHHHHTC
T ss_pred ChHHHHHHHHHHHHHHHHh
Confidence 3699999999999996543
No 2
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=48.73 E-value=8.8 Score=23.21 Aligned_cols=19 Identities=26% Similarity=0.772 Sum_probs=16.2
Q ss_pred hhhhHHHHHhhhhHhhhhh
Q 023851 106 RLGRVYVASILYGYFLKSA 124 (276)
Q Consensus 106 ~Lg~vyAAsmM~GYFLr~~ 124 (276)
.+|++||+=|++-||-+.-
T Consensus 2 ~VGKiYA~llI~d~~r~~k 20 (23)
T 3dvk_B 2 HMGKIYAAMMIMDYYKQSK 20 (26)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHh
Confidence 4799999999999997653
No 3
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=38.18 E-value=18 Score=22.47 Aligned_cols=20 Identities=20% Similarity=0.532 Sum_probs=16.2
Q ss_pred hHHHHHhhhhHhhhhhhhHh
Q 023851 109 RVYVASILYGYFLKSASLRY 128 (276)
Q Consensus 109 ~vyAAsmM~GYFLr~~eqR~ 128 (276)
++|||=|++-||=++=..|-
T Consensus 1 KvYAa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 1 KIYAAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred ChhHHHHHHHHHHHHHhhhh
Confidence 48999999999977766654
No 4
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C; calmodulin-bound, coiled coil, acetylation, methylation, phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB: 3oxq_E
Probab=33.25 E-value=13 Score=28.61 Aligned_cols=20 Identities=25% Similarity=0.645 Sum_probs=15.4
Q ss_pred chhhhhhHHHHHhhhhHhhh
Q 023851 103 QRLRLGRVYVASILYGYFLK 122 (276)
Q Consensus 103 sr~~Lg~vyAAsmM~GYFLr 122 (276)
+..++|++||+=|++-||=+
T Consensus 56 ~~lTVGKiYA~llI~d~~r~ 75 (81)
T 3g43_E 56 DEVTVGKFYATFLIQEYFRK 75 (81)
T ss_dssp ---CCCCHHHHHHHHHHHHH
T ss_pred CcEeehHHHHHHHHHHHHHH
Confidence 56889999999999999954
No 5
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=30.97 E-value=47 Score=24.42 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=18.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Q 023851 7 FVGKIAQLKEHECQTAVEDVMYML 30 (276)
Q Consensus 7 LyrRIAevKe~Err~alEdImY~l 30 (276)
||+.+=++-+.|+ |+||.||.|
T Consensus 4 l~~Qll~l~Aed~--AieDaiy~L 25 (65)
T 2f6m_A 4 GLNQLYNLVAQDY--ALTDTIEAL 25 (65)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHH
Confidence 6777777777775 999999986
No 6
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=26.10 E-value=16 Score=25.58 Aligned_cols=21 Identities=52% Similarity=0.599 Sum_probs=13.2
Q ss_pred HhhhhHhhhhhhhHhHHHHHH
Q 023851 114 SILYGYFLKSASLRYYLEECL 134 (276)
Q Consensus 114 smM~GYFLr~~eqR~~LE~sl 134 (276)
|++||||+-.--.--.+|.-|
T Consensus 4 S~L~G~F~D~W~~GT~~~~~m 24 (51)
T 2xf7_A 4 SLLYGYFLDSWLDGTASEELL 24 (51)
T ss_dssp CTTHHHHHHHHHHTCCCHHHH
T ss_pred hHHHHHHHHHHhcchhhHHHH
Confidence 689999997654433344333
No 7
>2qsr_A Transcription-repair coupling factor; structural genomics, PSI-2, protein ST initiative; 3.10A {Streptococcus pneumoniae}
Probab=16.83 E-value=48 Score=27.83 Aligned_cols=21 Identities=14% Similarity=0.147 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHH
Q 023851 5 PVFVGKIAQLKEHECQTAVED 25 (276)
Q Consensus 5 ~vLyrRIAevKe~Err~alEd 25 (276)
+-+|||||.++..|--.++++
T Consensus 31 L~lYkria~~~~~eel~~l~~ 51 (173)
T 2qsr_A 31 IEIYKKIRQIDNRVNYEELQE 51 (173)
T ss_dssp HHHHHHHHTCCSHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 469999999988776655543
No 8
>2kbv_A Sodium/hydrogen exchanger 1; transmembrane, peptide, NHE1, micelle, alternative splicing, antiport, glycoprotein, ION transport, membrane; NMR {Synthetic}
Probab=14.69 E-value=44 Score=20.84 Aligned_cols=22 Identities=32% Similarity=0.703 Sum_probs=14.8
Q ss_pred EEechhhhHHHHHHHHhhh-hhhhhhh
Q 023851 239 ILTSFSSLKRLVLEAIAFG-SFLWDAE 264 (276)
Q Consensus 239 i~isfs~LkrLVLEAVAFG-SFLwDvE 264 (276)
..+.|+|||= ||||+ +|+||.|
T Consensus 5 ~i~~~~GLRG----AvafaL~~~l~~~ 27 (28)
T 2kbv_A 5 FIIAYGGLRG----AIAFSLGYLLDKK 27 (28)
T ss_dssp HHTTTTSSCH----HHHHHHHHHHHHC
T ss_pred eEEEeecchH----HHHHHHHHhccCC
Confidence 3478889987 77776 4555554
No 9
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=13.39 E-value=2.1e+02 Score=25.97 Aligned_cols=67 Identities=13% Similarity=0.277 Sum_probs=33.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH------HHHHHhh-------CCCcccCCcccccCCccccCCcchhhhhccCchHHHH
Q 023851 9 GKIAQLKEHECQTAVEDVMYMLI------LYKFSEI-------RVQLVPKLSRCIYNGRLEIWPSKDWELESIHEFEVLE 75 (276)
Q Consensus 9 rRIAevKe~Err~alEdImY~lI------v~KF~~~-------~V~mvP~ls~~~~~Grl~~wp~~~~~Le~ihS~Ev~e 75 (276)
.+.-||...+|.+|+| +|.-- +.+|.+. ++ -+|+|... .|+.-.+|++-- .||.+
T Consensus 227 e~ffem~~~da~~al~--iykrf~~Q~e~L~~Fy~~ck~l~l~~~-~iP~L~~~--------p~d~l~~lq~~i-~ev~~ 294 (310)
T 3zym_A 227 EKYFDMKKNQCKEGLD--IYKKFLTRMTRISEFLKVAEQVGIDRG-DISGSGSG--------HMDRVRNLQSEV-EGVKN 294 (310)
T ss_dssp HHGGGSCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTC---------------------------CHHHHH-HHHHH
T ss_pred HHHhccCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCCCCcc--------cchHHHHHHHHH-HHHHH
Confidence 3444567789999998 46443 2344432 22 35666542 122334454433 68899
Q ss_pred HHHHHHHHhhcc
Q 023851 76 MIREHISTVIGL 87 (276)
Q Consensus 76 mI~~hl~~vLG~ 87 (276)
+|++|+..||..
T Consensus 295 im~~ni~~vl~r 306 (310)
T 3zym_A 295 IMTQNVERILAR 306 (310)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhHHHHHhc
Confidence 999999998853
No 10
>3s1b_A Mini-Z; VEGF, cystine knot, signaling protein; 2.90A {Homo sapiens}
Probab=11.71 E-value=91 Score=19.98 Aligned_cols=10 Identities=20% Similarity=0.315 Sum_probs=7.7
Q ss_pred HHHHHHHHHh
Q 023851 6 VFVGKIAQLK 15 (276)
Q Consensus 6 vLyrRIAevK 15 (276)
-||.|||.+-
T Consensus 19 nlyqriakiv 28 (34)
T 3s1b_A 19 NLYQRIAKIV 28 (34)
T ss_dssp CHHHHHHHHH
T ss_pred hHHHHHHHHh
Confidence 4899999753
Done!