Query 023851
Match_columns 276
No_of_seqs 95 out of 113
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 13:51:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023851.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023851hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fnaa1 a.4.5.11 (A:284-356) H 19.3 17 0.0012 25.6 1.0 20 248-268 9-29 (73)
2 d2nn6a2 d.101.1.1 (A:185-302) 17.7 57 0.0042 23.5 3.9 32 196-227 57-88 (118)
3 d2nn6c2 d.101.1.1 (C:188-276) 15.8 70 0.0051 21.6 3.8 29 196-224 55-83 (89)
4 d2nn6e2 d.101.1.1 (E:192-285) 13.6 88 0.0064 21.3 3.8 30 196-225 55-84 (94)
5 d2je6a2 d.101.1.1 (A:192-275) 11.5 85 0.0062 20.7 3.1 29 196-224 54-82 (84)
6 d1cmza_ a.91.1.1 (A:) Galpha i 10.1 57 0.0042 23.1 1.8 70 7-85 41-110 (128)
7 d2eyqa6 d.315.1.1 (A:990-1147) 9.7 70 0.0051 23.7 2.2 20 5-24 35-54 (158)
8 d1r59o2 c.55.1.4 (O:257-491) G 9.6 59 0.0043 25.9 1.9 18 241-258 116-133 (235)
9 d1iq4a_ d.77.1.1 (A:) Ribosoma 9.3 1.5E+02 0.011 23.1 4.3 47 32-90 17-66 (179)
10 d2f6ma1 a.2.17.1 (A:322-385) V 9.2 65 0.0047 21.9 1.7 11 20-30 14-24 (64)
No 1
>d2fnaa1 a.4.5.11 (A:284-356) Hypothetical protein SSO1545, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=19.33 E-value=17 Score=25.59 Aligned_cols=20 Identities=10% Similarity=0.290 Sum_probs=14.7
Q ss_pred HHHHHHHhhhhhhh-hhhhccc
Q 023851 248 RLVLEAIAFGSFLW-DAEEYAD 268 (276)
Q Consensus 248 rLVLEAVAFGSFLw-DvEsyVD 268 (276)
..||+|||+|+- | ++=.||+
T Consensus 9 ~~ILkaia~G~r-Ws~IK~yle 29 (73)
T d2fnaa1 9 LNIMRTLSKCGK-WSDVKRALE 29 (73)
T ss_dssp HHHHHHHTTCBC-HHHHHHHHH
T ss_pred HHHHHHHHccCc-HHHHHHHHH
Confidence 579999999975 6 4555554
No 2
>d2nn6a2 d.101.1.1 (A:185-302) Exosome complex exonuclease RRP45 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.72 E-value=57 Score=23.54 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=28.7
Q ss_pred cCCHHHHHHHhhhhhHHHHHHHHHhhhhhccC
Q 023851 196 GFDPETLQRCAKLRSREAVNLVEKHSCALFGD 227 (276)
Q Consensus 196 ~fD~eTLqr~A~irSkEav~liEkht~ALFG~ 227 (276)
.|+++++.+|..+..+.+-.|.+..-.||-.+
T Consensus 57 ~l~~~~l~~~~~~A~~~~~el~~~i~~aLk~~ 88 (118)
T d2nn6a2 57 MLLKDQVLRCSKIAGVKVAEITELILKALEND 88 (118)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999998643
No 3
>d2nn6c2 d.101.1.1 (C:188-276) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.80 E-value=70 Score=21.58 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=26.3
Q ss_pred cCCHHHHHHHhhhhhHHHHHHHHHhhhhh
Q 023851 196 GFDPETLQRCAKLRSREAVNLVEKHSCAL 224 (276)
Q Consensus 196 ~fD~eTLqr~A~irSkEav~liEkht~AL 224 (276)
.|++++++.|..+..+.+-.|.+..-+||
T Consensus 55 ~l~~~~l~~~~~~A~~~~~~l~~~l~~al 83 (89)
T d2nn6c2 55 GLTGAKLQDCMSRAVTRHKEVKKLMDEVI 83 (89)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999888876
No 4
>d2nn6e2 d.101.1.1 (E:192-285) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.56 E-value=88 Score=21.35 Aligned_cols=30 Identities=17% Similarity=0.218 Sum_probs=27.5
Q ss_pred cCCHHHHHHHhhhhhHHHHHHHHHhhhhhc
Q 023851 196 GFDPETLQRCAKLRSREAVNLVEKHSCALF 225 (276)
Q Consensus 196 ~fD~eTLqr~A~irSkEav~liEkht~ALF 225 (276)
.|+++++..|..+..+-+..|.+..-+||=
T Consensus 55 ~l~~~~i~~~i~~A~~~~~el~~~l~~~L~ 84 (94)
T d2nn6e2 55 SLDPESIFEMMETGKRVGKVLHASLQSVVH 84 (94)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999888873
No 5
>d2je6a2 d.101.1.1 (A:192-275) Exosome complex exonuclease 2, ECX2 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=11.50 E-value=85 Score=20.72 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=26.2
Q ss_pred cCCHHHHHHHhhhhhHHHHHHHHHhhhhh
Q 023851 196 GFDPETLQRCAKLRSREAVNLVEKHSCAL 224 (276)
Q Consensus 196 ~fD~eTLqr~A~irSkEav~liEkht~AL 224 (276)
.|+++.+.+|-.+..+.+..|++..-+||
T Consensus 54 ~~~~~~i~~~i~~A~~~~~~l~~~l~~~l 82 (84)
T d2je6a2 54 SMSLQDIDQAENTARSTAVKLLEELKKHL 82 (84)
T ss_dssp CEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999887775
No 6
>d1cmza_ a.91.1.1 (A:) Galpha interacting protein, GaIP {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.14 E-value=57 Score=23.06 Aligned_cols=70 Identities=17% Similarity=0.169 Sum_probs=38.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCcccCCcccccCCccccCCcchhhhhccCchHHHHHHHHHHHHhh
Q 023851 7 FVGKIAQLKEHECQTAVEDVMYMLILYKFSEIRVQLVPKLSRCIYNGRLEIWPSKDWELESIHEFEVLEMIREHISTVI 85 (276)
Q Consensus 7 LyrRIAevKe~Err~alEdImY~lIv~KF~~~~V~mvP~ls~~~~~Grl~~wp~~~~~Le~ihS~Ev~emI~~hl~~vL 85 (276)
+|.=+.+.|...-+..+.+. -.-|.+||...+-+.-+.+++.+.+. ....+..++ +++++-++++|..+|
T Consensus 41 Fw~~ve~fk~~~~~~~~~~~-a~~Iy~~yi~~~s~~~~~i~~~~r~~-------i~~~~~~~~-~~~F~~aq~~V~~~l 110 (128)
T d1cmza_ 41 FWLACEELKAEANQHVVDEK-ARLIYEDYVSILSPKEVSLDSRVREG-------INKKMQEPS-AHTFDDAQLQIYTLM 110 (128)
T ss_dssp HHHHHHHGGGTCCSHHHHHH-HHHHHHHTTTCSSSCCCSCCSHHHHH-------HHHHSSSCC-TTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHH-HHHHHHHHhccCCCccCCcCHHHHHH-------HHHHhcCCC-HHHHHHHHHHHHHHH
Confidence 34455566543333333332 25688999988877777766532110 012233433 566777777776666
No 7
>d2eyqa6 d.315.1.1 (A:990-1147) Transcription-repair coupling factor, TRCF, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=9.67 E-value=70 Score=23.73 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhHHHHHHHHH
Q 023851 5 PVFVGKIAQLKEHECQTAVE 24 (276)
Q Consensus 5 ~vLyrRIAevKe~Err~alE 24 (276)
+-+|||||..+..+--..++
T Consensus 35 l~~Ykrla~~~~~~el~~i~ 54 (158)
T d2eyqa6 35 LSFYKRIASAKTENELEEIK 54 (158)
T ss_dssp HHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHHHHccccHHHHHHHH
Confidence 46899999998776554443
No 8
>d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]}
Probab=9.57 E-value=59 Score=25.92 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=14.6
Q ss_pred echhhhHHHHHHHHhhhh
Q 023851 241 TSFSSLKRLVLEAIAFGS 258 (276)
Q Consensus 241 isfs~LkrLVLEAVAFGS 258 (276)
.+-..+=|.|||+|||+.
T Consensus 116 ~~~~~l~rAvlEgiaf~~ 133 (235)
T d1r59o2 116 TTKEDFVRATLQAVAYQS 133 (235)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 345568899999999984
No 9
>d1iq4a_ d.77.1.1 (A:) Ribosomal protein L5 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=9.30 E-value=1.5e+02 Score=23.10 Aligned_cols=47 Identities=23% Similarity=0.404 Sum_probs=36.9
Q ss_pred HHHHHhhCCCcccCCccc-c--cCCccccCCcchhhhhccCchHHHHHHHHHHHHhhccccC
Q 023851 32 LYKFSEIRVQLVPKLSRC-I--YNGRLEIWPSKDWELESIHEFEVLEMIREHISTVIGLRAN 90 (276)
Q Consensus 32 v~KF~~~~V~mvP~ls~~-~--~~Grl~~wp~~~~~Le~ihS~Ev~emI~~hl~~vLG~~~~ 90 (276)
..||.-.++-.+|+|... + ..| +....+..++....-+..|.|..|.
T Consensus 17 ~~k~~~~N~m~vPki~KIvln~gvg------------~a~~~~~~l~~~~~~L~~ItGQkp~ 66 (179)
T d1iq4a_ 17 MSKFNYKSIMQVPKIEKIVINMGVG------------DAVQNPKALDSAVEELTLIAGQRPV 66 (179)
T ss_dssp HHHHCCSSGGGSCCEEEEEEEEECS------------CSSSCHHHHHHHHHHHHHHHSSCCE
T ss_pred HHHhCCCCchhcCeeeEEEEECCCC------------ccccchHHHHHHHHHHHHhcCCceE
Confidence 378999999999999983 2 333 3445567888999999999999983
No 10
>d2f6ma1 a.2.17.1 (A:322-385) Vacuolar protein sorting-associated protein 23, VPS23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.22 E-value=65 Score=21.88 Aligned_cols=11 Identities=27% Similarity=0.332 Sum_probs=9.1
Q ss_pred HHHHHHHHHHH
Q 023851 20 QTAVEDVMYML 30 (276)
Q Consensus 20 r~alEdImY~l 30 (276)
-.|+||.||+|
T Consensus 14 d~AieDaiy~L 24 (64)
T d2f6ma1 14 DYALTDTIEAL 24 (64)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35899999986
Done!