BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023852
(276 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZS3|A Chain A, High Resolution Structure Of Mal D 2, The Thaumatin Like
Food Allergen From Apple
Length = 222
Score = 187 bits (475), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 129/219 (58%), Gaps = 10/219 (4%)
Query: 19 FTIVNDCKETIWPAITPGEN---FNNGGFPLKSGQSIVFNAPVGWSGRIWGRSGCKFDKN 75
T N+C T+WP G+ + GF L S S +AP WSGR WGR+ C D
Sbjct: 3 ITFTNNCPNTVWPGTLTGDQKPQLSLTGFELASKASRSVDAPSPWSGRFWGRTRCSTDAA 62
Query: 76 GNGSCLTGACGT-SLKCSASGA-PPATLAEFTLSA---LDFYDVSLVDGFNLPMSVKPIN 130
G +C T CG+ + C+ +GA PPATL E T++A D+YDVSLVDGFNLPMSV P
Sbjct: 63 GKFTCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPMSVAPQG 122
Query: 131 GKGNCSVAGCDGDLRLTCPSELSVKS-KGKTVACRSACDVFNTDEYCCRGVYGNPVVCQP 189
G G C + C ++ CP+ L VK+ G ++C+SAC F +YCC P C P
Sbjct: 123 GTGECKPSSCPANVNKVCPAPLQVKAADGSVISCKSACLAFGDSKYCCTPPNNTPETCPP 182
Query: 190 TYYSKKFKDACPTAYSYAYDDPTSIFTCA-GTDYVITFC 227
T YS+ F+ CP AYSYAYDD S FTC+ G DYVITFC
Sbjct: 183 TEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFC 221
>pdb|2AHN|A Chain A, High Resolution Structure Of A Cherry Allergen Pru Av 2
Length = 222
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/220 (47%), Positives = 125/220 (56%), Gaps = 10/220 (4%)
Query: 18 VFTIVNDCKETIWPAITPGEN---FNNGGFPLKSGQSIVFNAPVGWSGRIWGRSGCKFDK 74
+ N+C +WP + + GF L S S + PV W+GR W R+GC D
Sbjct: 2 TISFKNNCPYMVWPGTLTSDQKPQLSTTGFELASQASFQLDTPVPWNGRFWARTGCSTDA 61
Query: 75 NGNGSCLTGACGT-SLKCSASGA-PPATLAEFTLSA---LDFYDVSLVDGFNLPMSVKPI 129
+G C T C + + C+ +GA PPATLAEF + A DFYDVSLVDGFNLPMSV P
Sbjct: 62 SGKFVCATADCASGQVMCNGNGAIPPATLAEFNIPAGGGQDFYDVSLVDGFNLPMSVTPQ 121
Query: 130 NGKGNCSVAGCDGDLRLTCPSELSVK-SKGKTVACRSACDVFNTDEYCCRGVYGNPVVCQ 188
G G+C A C ++ CPSEL K S G VAC SAC F T +YCC P C
Sbjct: 122 GGTGDCKTASCPANVNAVCPSELQKKGSDGSVVACLSACVKFGTPQYCCTPPQNTPETCP 181
Query: 189 PTYYSKKFKDACPTAYSYAYDDPTSIFTC-AGTDYVITFC 227
PT YS+ F +ACP AYSYAYDD FTC G +Y ITFC
Sbjct: 182 PTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFC 221
>pdb|1DU5|A Chain A, The Crystal Structure Of Zeamatin.
pdb|1DU5|B Chain B, The Crystal Structure Of Zeamatin
Length = 206
Score = 178 bits (452), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 124/215 (57%), Gaps = 16/215 (7%)
Query: 18 VFTIVNDCKETIWPAITPGENFNNGGFPLKSGQSIVFNAPVGWSG-RIWGRSGCKFDKNG 76
VFT+VN C T+W A P GG L G+S AP G + RIW R+GCKFD +G
Sbjct: 2 VFTVVNQCPFTVWAASVP----VGGGRQLNRGESWRITAPAGTTAARIWARTGCKFDASG 57
Query: 77 NGSCLTGACGTSLKCSASGAPPATLAEFTLSA---LDFYDVSLVDGFNLPMSVKPINGKG 133
GSC TG CG L+C+ G P TLAE+ L LDF+D+SL+DGFN+PMS P G G
Sbjct: 58 RGSCRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSG 117
Query: 134 NCSVAGCDGDLRLTCPSELSVKSKGKTVACRSACDVFNTDEYCCRGVYGNPVVCQPTYYS 193
C D+ CP+EL + C +AC VF DEYCC G N C PT YS
Sbjct: 118 CSRGPRCAVDVNARCPAELR-----QDGVCNNACPVFKKDEYCCVGSAAND--CHPTNYS 170
Query: 194 KKFKDACPTAYSYAYDDPTSIFTC-AGTDYVITFC 227
+ FK CP AYSY DD TS FTC AGT+Y + FC
Sbjct: 171 RYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFC 205
>pdb|1Z3Q|A Chain A, Resolution Of The Structure Of The Allergenic And
Antifungal Banana Fruit Thaumatin-Like Protein At 1.7a
Length = 200
Score = 174 bits (440), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 102/215 (47%), Positives = 118/215 (54%), Gaps = 22/215 (10%)
Query: 18 VFTIVNDCKETIWPAITPGENFNNGGFPLKSGQSIVFNAPVGWSG-RIWGRSGCKFDKNG 76
F IVN C T+W A PG GG L GQS N G +G RIWGR+GC FD +G
Sbjct: 2 TFEIVNRCSYTVWAAAVPG-----GGRQLNQGQSWTINVNAGTTGGRIWGRTGCSFDGSG 56
Query: 77 NGSCLTGACGTSLKCSASGAPPATLAEFTLSA---LDFYDVSLVDGFNLPMSVKPINGKG 133
G C TG CG L C+A G PP TLAEF L+ LDF+D+SLVDGFN+PM P G
Sbjct: 57 RGRCQTGDCGGVLSCTAYGNPPNTLAEFALNQFNNLDFFDISLVDGFNVPMDFSPT--SG 114
Query: 134 NCSVAGCDGDLRLTCPSELSVKSKGKTVACRSACDVFNTDEYCCRGVYGNPVVCQPTYYS 193
C C D+ CP L C + C VF TD+YCC N C PT YS
Sbjct: 115 GCRGIRCAADINGQCPGALKAPG-----GCNNPCTVFKTDQYCC-----NSGACSPTDYS 164
Query: 194 KKFKDACPTAYSYAYDDPTSIFTC-AGTDYVITFC 227
+ FK CP AYSY DD T+ FTC GT+Y + FC
Sbjct: 165 QFFKRNCPDAYSYPKDDQTTTFTCPGGTNYRVVFC 199
>pdb|4H8T|A Chain A, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
pdb|4H8T|B Chain B, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
Length = 198
Score = 167 bits (424), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 103/215 (47%), Positives = 122/215 (56%), Gaps = 24/215 (11%)
Query: 18 VFTIVNDCKETIWPAITPGENFNNGGFPLKSGQSIVFNA-PVGWSGRIWGRSGCKFDKNG 76
F I+N C T+W A +PG GG L SGQS P + RIWGR+ C FD NG
Sbjct: 2 TFDILNKCTYTVWAAASPG-----GGRRLDSGQSWTITVNPGTTNARIWGRTSCTFDANG 56
Query: 77 NGSCLTGACGTSLKCSASGAPPATLAEFTLSA---LDFYDVSLVDGFNLPMSVKPINGKG 133
G C TG C L+C G+PP TLAEF L+ LD+ D+SLVDGFN+PM
Sbjct: 57 RGKCETGDCNGLLECQGYGSPPNTLAEFALNQPNNLDYIDISLVDGFNIPMDFS------ 110
Query: 134 NCSVAGCDGDLRLTCPSELSVKSKGKTVACRSACDVFNTDEYCCRGVYGNPVVCQPTYYS 193
C C D+ CPSEL K+ G C + C VF T+EYCC P C PT YS
Sbjct: 111 GCRGIQCSVDINGQCPSEL--KAPG---GCNNPCTVFKTNEYCCT---DGPGSCGPTTYS 162
Query: 194 KKFKDACPTAYSYAYDDPTSIFTC-AGTDYVITFC 227
K FKD CP AYSY DD TS+FTC +GT+Y +TFC
Sbjct: 163 KFFKDRCPDAYSYPQDDKTSLFTCPSGTNYKVTFC 197
>pdb|1PCV|A Chain A, Crystal Structure Of Osmotin, A Plant Antifungal Protein
pdb|1PCV|B Chain B, Crystal Structure Of Osmotin, A Plant Antifungal Protein
Length = 205
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 119/214 (55%), Gaps = 21/214 (9%)
Query: 21 IVNDCKETIWPAITPGENFNNGGFPLKSGQSIVFNAPVGWS-GRIWGRSGCKFDKNGNGS 79
+ N+C T+W A TP GG L GQ+ V NAP G R+WGR+ C F+ G G+
Sbjct: 5 VRNNCPYTVWAASTP----IGGGRRLDRGQTWVINAPRGTKMARVWGRTNCNFNAAGRGT 60
Query: 80 CLTGACGTSLKCSASGAPPATLAEFTL---SALDFYDVSLVDGFNLPMSVKPIN-GKGNC 135
C TG CG L+C+ G PP TLAE+ L S LDF+D+SLVDGFN+PM+ P N G C
Sbjct: 61 CQTGDCGGVLQCTGWGKPPNTLAEYALDQFSGLDFWDISLVDGFNIPMTFAPTNPSGGKC 120
Query: 136 SVAGCDGDLRLTCPSELSVKSKGKTVACRSACDVFNTDEYCCRGVYGNPVVCQPTYYSKK 195
C ++ CP EL V C + C F +YCC C PT++SK
Sbjct: 121 HAIHCTANINGECPRELRVPG-----GCNNPCTTFGGQQYCC-----TQGPCGPTFFSKF 170
Query: 196 FKDACPTAYSYAYDDPTSIFTCAG--TDYVITFC 227
FK CP AYSY DDPTS FTC G T+Y + FC
Sbjct: 171 FKQRCPDAYSYPQDDPTSTFTCPGGSTNYRVIFC 204
>pdb|2I0W|A Chain A, Crystal Structure Analysis Of Np24-I, A Thaumatin-Like
Protein
Length = 207
Score = 161 bits (407), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 116/214 (54%), Gaps = 21/214 (9%)
Query: 21 IVNDCKETIWPAITPGENFNNGGFPLKSGQSIVFNAPVGWS-GRIWGRSGCKFDKNGNGS 79
+ N+C T+W A TP GG L GQ+ V NAP G RIWGR+GC F+ G G+
Sbjct: 5 VRNNCPYTVWAASTP----IGGGRRLNRGQTWVINAPRGTKMARIWGRTGCNFNAAGRGT 60
Query: 80 CLTGACGTSLKCSASGAPPATLAEFTL---SALDFYDVSLVDGFNLPMSVKPIN-GKGNC 135
C TG CG L+C+ G PP TLAE+ L S LDF+D+SLVDGFN+PM+ P G C
Sbjct: 61 CQTGDCGGVLQCTGWGKPPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAPTKPSGGKC 120
Query: 136 SVAGCDGDLRLTCPSELSVKSKGKTVACRSACDVFNTDEYCCRGVYGNPVVCQPTYYSKK 195
C ++ CP L V C + C F +YCC C PT SK
Sbjct: 121 HAIHCTANINGECPRALKVPG-----GCNNPCTTFGGQQYCC-----TQGPCGPTELSKF 170
Query: 196 FKDACPTAYSYAYDDPTSIFTCAG--TDYVITFC 227
FK CP AYSY DDPTS FTC G T+Y + FC
Sbjct: 171 FKKRCPDAYSYPQDDPTSTFTCPGGSTNYRVVFC 204
>pdb|1AUN|A Chain A, Pathogenesis-Related Protein 5d From Nicotiana Tabacum
Length = 208
Score = 160 bits (405), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 115/217 (52%), Gaps = 21/217 (9%)
Query: 18 VFTIVNDCKETIWPAITPGENFNNGGFPLKSGQSIVFNAPVGWS-GRIWGRSGCKFDKNG 76
VF + N+C T+W A TP GG L+ GQS F AP G RIWGR+ C FD G
Sbjct: 3 VFEVHNNCPYTVWAAATP----VGGGRRLERGQSWWFWAPPGTKMARIWGRTNCNFDGAG 58
Query: 77 NGSCLTGACGTSLKCSASGAPPATLAEFTL---SALDFYDVSLVDGFNLPMSVKPIN-GK 132
G C TG CG L+C G PP TLAE+ L S LDF+D+S++DGFN+PMS P G
Sbjct: 59 RGWCQTGDCGGVLECKGWGKPPNTLAEYALNQFSNLDFWDISVIDGFNIPMSFGPTKPGP 118
Query: 133 GNCSVAGCDGDLRLTCPSELSVKSKGKTVACRSACDVFNTDEYCCRGVYGNPVVCQPTYY 192
G C C ++ CP L V C + C F +YCC C PT
Sbjct: 119 GKCHGIQCTANINGECPGSLRVPG-----GCNNPCTTFGGQQYCC-----TQGPCGPTEL 168
Query: 193 SKKFKDACPTAYSYAYDDPTSIFTCAG--TDYVITFC 227
S+ FK CP AYSY DDPTS FTC TDY + FC
Sbjct: 169 SRWFKQRCPDAYSYPQDDPTSTFTCTSWTTDYKVMFC 205
>pdb|1KWN|A Chain A, 1.2 A Structure Of Thaumatin Crystallized In Gel
pdb|1LXZ|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LY0|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LR2|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1LR3|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1PP3|A Chain A, Structure Of Thaumatin In A Hexagonal Space Group
pdb|1PP3|B Chain B, Structure Of Thaumatin In A Hexagonal Space Group
pdb|2OQN|A Chain A, High Pressure Cryocooling Of Capillary Sample
Cryoprotection And Diffraction Phasing At Long
Wavelengths
pdb|1THI|A Chain A, Crystal Structures Of Two Intensely Sweet Proteins
pdb|2VHR|A Chain A, Atomic Resolution (0.95a) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 4 C
pdb|2VI1|A Chain A, Atomic Resolution (1.04 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 22 C.
pdb|2VI2|A Chain A, Atomic Resolution (1.05 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 4c
pdb|2VI3|A Chain A, Atomic Resolution (0.98 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 20 C
pdb|2VI4|A Chain A, Atomic Resolution (1.10 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 6 C.
pdb|2VU6|A Chain A, Atomic Resolution (0.95 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 19 C.
pdb|2VU7|A Chain A, Atomic Resolution (1.08 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 4 C
pdb|3QY5|A Chain A, Microfluidic Crystallization Of Thaumatin Using The
Crystal Former
pdb|4AXR|A Chain A, Crystal Structure Of Thaumatin From A Auto-Harvested
Crystal
pdb|4BAL|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-
Hydroxymethyltriazoledipicolinate Complex At 1.30 A
Resolution.
pdb|4BAR|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-Hydroxyethyltriazole
Dipicolinate Complex At 1.20 A Resolution.
pdb|3ZEJ|A Chain A, Thaumatin Structure Determined At Room Temperature By
In-Situ Diffraction In Chipx
Length = 207
Score = 147 bits (371), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 115/214 (53%), Gaps = 15/214 (7%)
Query: 18 VFTIVNDCKETIWPAITPGEN-FNNGGFPLKSGQSIVFNAPVGWSG-RIWGRSGCKFDKN 75
F IVN C T+W A + G+ + GG L SG+S N G +G +IW R+ C FD +
Sbjct: 2 TFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDS 61
Query: 76 GNGSCLTGACGTSLKCSASGAPPATLAEFTLSAL--DFYDVSLVDGFNLPMSVKPINGKG 133
G+G C TG CG L+C G PP TLAEF+L+ D+ D+S + GFN+PM+ P
Sbjct: 62 GSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMNFSPTT--R 119
Query: 134 NCSVAGCDGDLRLTCPSELSVKSKGKTVACRSACDVFNTDEYCCRGVYGNPVVCQPTYYS 193
C C D+ CP++L G C AC VF T EYCC C PT YS
Sbjct: 120 GCRGVRCAADIVGQCPAKLKAPGGG----CNDACTVFQTSEYCC-----TTGKCGPTEYS 170
Query: 194 KKFKDACPTAYSYAYDDPTSIFTCAGTDYVITFC 227
+ FK CP A+SY D PT++ ++Y +TFC
Sbjct: 171 RFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFC 204
>pdb|2BLR|A Chain A, Thaumatin Before A High Dose X-Ray "burn"
pdb|2BLU|A Chain A, Thaumatin After A High Dose X-Ray "burn"
pdb|2VHK|A Chain A, Atomic Resolution (0.94 A) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 22c
pdb|2WBZ|A Chain A, 1.6 A Structure Of Thaumatin Crystallized Without Tartrate
At 4 C
pdb|3N02|A Chain A, Thaumatic Crystals Grown In Loops/micromounts
pdb|3N03|A Chain A, Thaumatin Crystals Grown From Drops
pdb|4AXU|A Chain A, Crystal Structure Of Thaumatin From An Auto-Harvested
Crystal, Control Experiment
Length = 206
Score = 147 bits (370), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 115/214 (53%), Gaps = 15/214 (7%)
Query: 18 VFTIVNDCKETIWPAITPGEN-FNNGGFPLKSGQSIVFNAPVGWSG-RIWGRSGCKFDKN 75
F IVN C T+W A + G+ + GG L SG+S N G +G +IW R+ C FD +
Sbjct: 2 TFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDS 61
Query: 76 GNGSCLTGACGTSLKCSASGAPPATLAEFTLSAL--DFYDVSLVDGFNLPMSVKPINGKG 133
G+G C TG CG L+C G PP TLAEF+L+ D+ D+S + GFN+PM+ P
Sbjct: 62 GSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMNFSPTT--R 119
Query: 134 NCSVAGCDGDLRLTCPSELSVKSKGKTVACRSACDVFNTDEYCCRGVYGNPVVCQPTYYS 193
C C D+ CP++L G C AC VF T EYCC C PT YS
Sbjct: 120 GCRGVRCAADIVGQCPAKLKAPGGG----CNDACTVFQTSEYCC-----TTGKCGPTEYS 170
Query: 194 KKFKDACPTAYSYAYDDPTSIFTCAGTDYVITFC 227
+ FK CP A+SY D PT++ ++Y +TFC
Sbjct: 171 RFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFC 204
>pdb|1THV|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|2PE7|A Chain A, Thaumatin From Thaumatococcus Danielli In Complex With
Tris- Dipicolinate Europium
pdb|3E3S|A Chain A, Structure Of Thaumatin With The Magic Triangle I3c
pdb|3AL7|A Chain A, Recombinant Thaumatin I At 1.1 A
pdb|3ALD|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin I At
1.10 A
pdb|3VHF|A Chain A, Plant Thaumatin I At Ph 8.0
pdb|3VJQ|A Chain A, Recombinant Thaumatin At Ph 8.0 With Hydrogen Atoms
pdb|3VHG|A Chain A, Recombinant Thaumatin I At Ph 8.0
pdb|3V7V|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V82|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V84|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V87|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V88|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V8A|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCE|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCG|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCH|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCI|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCJ|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCK|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|4DC5|A Chain A, Crystal Structure Of Thaumatin Unexposed To Excessive
Sonicc Imaging Laser Dose.
pdb|4DC6|A Chain A, Crystal Structure Of Thaumatin Exposed To Excessive Sonicc
Imaging Laser Dose
Length = 207
Score = 147 bits (370), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 114/214 (53%), Gaps = 15/214 (7%)
Query: 18 VFTIVNDCKETIWPAITPGEN-FNNGGFPLKSGQSIVFNAPVGWSG-RIWGRSGCKFDKN 75
F IVN C T+W A + G+ + GG L SG+S N G +G +IW R+ C FD +
Sbjct: 2 TFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDS 61
Query: 76 GNGSCLTGACGTSLKCSASGAPPATLAEFTLSAL--DFYDVSLVDGFNLPMSVKPINGKG 133
G+G C TG CG L+C G PP TLAEF+L+ D+ D+S + GFN+PM P
Sbjct: 62 GSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMDFSPTT--R 119
Query: 134 NCSVAGCDGDLRLTCPSELSVKSKGKTVACRSACDVFNTDEYCCRGVYGNPVVCQPTYYS 193
C C D+ CP++L G C AC VF T EYCC C PT YS
Sbjct: 120 GCRGVRCAADIVGQCPAKLKAPGGG----CNDACTVFQTSEYCC-----TTGKCGPTEYS 170
Query: 194 KKFKDACPTAYSYAYDDPTSIFTCAGTDYVITFC 227
+ FK CP A+SY D PT++ ++Y +TFC
Sbjct: 171 RFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFC 204
>pdb|3AOK|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin Ii
Length = 207
Score = 147 bits (370), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 112/214 (52%), Gaps = 15/214 (7%)
Query: 18 VFTIVNDCKETIWPAITPGEN-FNNGGFPLKSGQSIVFNAPVGWSG-RIWGRSGCKFDKN 75
F IVN C T+W A + G+ + GG L SG+S N G G +IW R+ C FD +
Sbjct: 2 TFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDDS 61
Query: 76 GNGSCLTGACGTSLKCSASGAPPATLAEFTLSAL--DFYDVSLVDGFNLPMSVKPINGKG 133
G G C TG CG L+C G PP TLAEF+L+ D+ D+S + GFN+PM P
Sbjct: 62 GRGICRTGDCGGLLQCKRFGRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMDFSPTT--R 119
Query: 134 NCSVAGCDGDLRLTCPSELSVKSKGKTVACRSACDVFNTDEYCCRGVYGNPVVCQPTYYS 193
C C D+ CP++L G C AC VF T EYCC C PT YS
Sbjct: 120 GCRGVRCAADIVGQCPAKLKAPGGG----CNDACTVFQTSEYCC-----TTGKCGPTEYS 170
Query: 194 KKFKDACPTAYSYAYDDPTSIFTCAGTDYVITFC 227
+ FK CP A+SY D PT++ ++Y +TFC
Sbjct: 171 RFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFC 204
>pdb|1RQW|A Chain A, Thaumatin Structure At 1.05 A Resolution
pdb|2A7I|X Chain X, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2G4Y|A Chain A, Structure Of Thaumatin At 2.0 A Wavelength
pdb|1THU|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|1THW|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|3DZN|A Chain A, Thaumatin By Lb Nanotemplate Method Before High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZP|A Chain A, Thaumatin By Lb Nanotemplate Method After High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZR|A Chain A, Thaumatin By Classical Hanging Drop Method Before High
X-Ray Dose On Esrf Id29 Beamline
pdb|3E0A|A Chain A, Thaumatin By Classical Hanging Drop Method After High
X-Ray Dose On Esrf Id29 Beamline
pdb|4DIY|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DIZ|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DJ0|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4DJ1|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4EK0|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 25 K
pdb|4EKA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 25 K
pdb|4EKB|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 100 K
pdb|4EKH|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 100 K
pdb|4EKO|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 180 K
pdb|4EKT|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 180 K
pdb|4EL2|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 240 K
pdb|4EL3|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 240 K
pdb|4EL7|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 300 K
pdb|4ELA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 300 K
Length = 207
Score = 147 bits (370), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 113/214 (52%), Gaps = 15/214 (7%)
Query: 18 VFTIVNDCKETIWPAITPGEN-FNNGGFPLKSGQSIVFNAPVGWSG-RIWGRSGCKFDKN 75
F IVN C T+W A + G+ + GG L SG+S N G G +IW R+ C FD +
Sbjct: 2 TFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDDS 61
Query: 76 GNGSCLTGACGTSLKCSASGAPPATLAEFTLSAL--DFYDVSLVDGFNLPMSVKPINGKG 133
G+G C TG CG L+C G PP TLAEF+L+ D+ D+S + GFN+PM P
Sbjct: 62 GSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMDFSPTT--R 119
Query: 134 NCSVAGCDGDLRLTCPSELSVKSKGKTVACRSACDVFNTDEYCCRGVYGNPVVCQPTYYS 193
C C D+ CP++L G C AC VF T EYCC C PT YS
Sbjct: 120 GCRGVRCAADIVGQCPAKLKAPGGG----CNDACTVFQTSEYCC-----TTGKCGPTEYS 170
Query: 194 KKFKDACPTAYSYAYDDPTSIFTCAGTDYVITFC 227
+ FK CP A+SY D PT++ ++Y +TFC
Sbjct: 171 RFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFC 204
>pdb|2D8O|A Chain A, Structure Of Vil-Thaumatin
Length = 207
Score = 144 bits (363), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 114/214 (53%), Gaps = 15/214 (7%)
Query: 18 VFTIVNDCKETIWPAITPGEN-FNNGGFPLKSGQSIVFNAPVGWSG-RIWGRSGCKFDKN 75
F IVN C T+W A + G+ + GG L SG+S N G +G +IW R+ C FD +
Sbjct: 2 TFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXFDDS 61
Query: 76 GNGSCLTGACGTSLKCSASGAPPATLAEFTLSAL--DFYDVSLVDGFNLPMSVKPINGKG 133
G+G C TG CG L+C G PP TLAEF+L+ D+ D+S + GFN+PM+ P
Sbjct: 62 GSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQXGKDYIDISNIKGFNVPMNFSPTT--R 119
Query: 134 NCSVAGCDGDLRLTCPSELSVKSKGKTVACRSACDVFNTDEYCCRGVYGNPVVCQPTYYS 193
C C D+ CP++L G C AC VF T EYCC C PT S
Sbjct: 120 GCRGVRCAADIVGQCPAKLKAPGGG----CNDACTVFQTSEYCC-----TTGKCGPTEXS 170
Query: 194 KKFKDACPTAYSYAYDDPTSIFTCAGTDYVITFC 227
+ FK CP A+SY D PT++ ++Y +TFC
Sbjct: 171 RFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFC 204
>pdb|2D8P|A Chain A, Structure Of Hyper-Vil-Thaumatin
Length = 207
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 113/214 (52%), Gaps = 15/214 (7%)
Query: 18 VFTIVNDCKETIWPAITPGEN-FNNGGFPLKSGQSIVFNAPVGWSG-RIWGRSGCKFDKN 75
F IVN C T+W A + G+ + GG L SG+S N G +G +IW R+ C FD +
Sbjct: 2 TFEIVNRCSXTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXFDDS 61
Query: 76 GNGSCLTGACGTSLKCSASGAPPATLAEFTLSAL--DFYDVSLVDGFNLPMSVKPINGKG 133
G+G C TG CG L+C G PP TLAEF+L+ D D+S + GFN+PM+ P
Sbjct: 62 GSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQXGKDXIDISNIKGFNVPMNFSPTT--R 119
Query: 134 NCSVAGCDGDLRLTCPSELSVKSKGKTVACRSACDVFNTDEYCCRGVYGNPVVCQPTYYS 193
C C D+ CP++L G C AC VF T EYCC C PT S
Sbjct: 120 GCRGVRCAADIVGQCPAKLKAPGGG----CNDACTVFQTSEYCC-----TTGKCGPTEXS 170
Query: 194 KKFKDACPTAYSYAYDDPTSIFTCAGTDYVITFC 227
+ FK CP A+SY D PT++ ++Y +TFC
Sbjct: 171 RFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFC 204
>pdb|3G7M|A Chain A, Structure Of The Thaumatin-Like Xylanase Inhibitor Tlxi
Length = 151
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 71/127 (55%), Gaps = 4/127 (3%)
Query: 19 FTIVNDCKETIWPAITPGENFNNGGFPLKSGQSIVFNAPVGWSGRIWGRSGCKFDKNGNG 78
TI N C T+WPA+ GG L G S + PV S IWGR+GC FD+ G G
Sbjct: 3 LTITNRCHFTVWPAVALVLAQGGGGTELHPGASWSLDTPVIGSQYIWGRTGCSFDRAGKG 62
Query: 79 SCLTGAC-GTSLKCSASGAPPATLAEFTLSALDF-YDV-SLVDGFNLPMSVKPINGKG-N 134
C TG C G+SL C + A P T+AE ++ ++ Y V S + GFN+PM++K +G
Sbjct: 63 RCQTGDCGGSSLTCGGNPAVPTTMAEVSVLQGNYTYGVTSTLKGFNVPMNLKCSSGDALP 122
Query: 135 CSVAGCD 141
C AGCD
Sbjct: 123 CRKAGCD 129
>pdb|1DVF|C Chain C, Idiotopic Antibody D1.3 Fv Fragment-Antiidiotopic Antibody
E5.2 Fv Fragment Complex
Length = 107
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 13/97 (13%)
Query: 143 DLRLT-CPSELSVKSKGK-TVACRSACDVFNTDEYCCRGVYGNPVVCQPTYYSKKFKDAC 200
D++LT PS LS + T++CR++ D+ N + + G V YY+ +
Sbjct: 1 DIQLTQSPSSLSASLGDRVTISCRASQDISNYLNWYQQKPDG--TVKLLIYYTSRLHSGV 58
Query: 201 PTAYSYAYDDPTSIFTCAGTDYVITFCSPRKQPVCTY 237
P+ +S + +GTDY +T + ++ + TY
Sbjct: 59 PSRFS---------GSGSGTDYSLTISNLEQEDIATY 86
>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With
Ind E804
Length = 324
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 18 VFTIVNDCKETIWPAITPGENFNNGGFPLKSGQSIVFNAP 57
+F I+ E WP I E F +P ++++ +AP
Sbjct: 213 IFRILGTPTEETWPGILSNEEFKTYNYPKYRAEALLSHAP 252
>pdb|1BVK|A Chain A, Humanized Anti-Lysozyme Fv Complexed With Lysozyme
pdb|1BVK|D Chain D, Humanized Anti-Lysozyme Fv Complexed With Lysozyme
pdb|1BVL|B Chain B, Humanized Anti-Lysozyme Fv
pdb|1BVL|D Chain D, Humanized Anti-Lysozyme Fv
Length = 108
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 143 DLRLT-CPSELSVKSKGK-TVACRSACDVFNTDEYCCRGVYGNPVVCQPTYYSKKFKDAC 200
D+++T PS LS + T+ CR++ ++ N + + P + YY+ D
Sbjct: 1 DIQMTQSPSSLSASVGDRVTITCRASGNIHNYLAWYQQKPGKAPKLL--IYYTTTLADGV 58
Query: 201 PTAYSYAYDDPTSIFTCAGTDYVITFCSPRKQPVCTYH 238
P+ +S + +GTDY T S + + + TY+
Sbjct: 59 PSRFS---------GSGSGTDYTFTISSLQPEDIATYY 87
>pdb|1FGV|L Chain L, X-Ray Structures Of Fragments From Binding And Nonbinding
Versions Of A Humanized Anti-Cd18 Antibody: Structural
Indications Of The Key Role Of Vh Residues 59 To 65
Length = 109
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 143 DLRLT-CPSELSVKSKGK-TVACRSACDVFNTDEYCCRGVYGNPVVCQPTYYSKKFKDAC 200
D+++T PS LS + T+ CR++ D+ N + + P + YY+ +
Sbjct: 1 DIQMTQSPSSLSASVGDRVTITCRASQDINNYLNWYQQKPGKAPKLL--IYYTSTLESGV 58
Query: 201 PTAYSYAYDDPTSIFTCAGTDYVITFCSPRKQPVCTYH 238
P+ +S + +GTDY +T S + + TY+
Sbjct: 59 PSRFS---------GSGSGTDYTLTISSLQPEDFATYY 87
>pdb|1MAM|L Chain L, Crystal Structure To 2.45 A Resolution Of A Monoclonal Fab
Specific For The Brucella A Cell Wall Polysaccharide
Antigen
Length = 214
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Query: 160 TVACRSACDVFNTDEYCCRGVYGNPVVCQPTYYSKKFKDACPTAYSYAYDDPTSIFTCAG 219
T++CR++ D++N + + G V YY+ + P+ +S + +G
Sbjct: 20 TISCRASQDIYNYLNWYQQKPDG--TVKLLIYYTSRLHSGVPSRFS---------GSGSG 68
Query: 220 TDYVITFCSPRKQPVCTY 237
TDY +T + ++ + TY
Sbjct: 69 TDYSLTISNLNQEDMATY 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,055,966
Number of Sequences: 62578
Number of extensions: 401680
Number of successful extensions: 1216
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1123
Number of HSP's gapped (non-prelim): 28
length of query: 276
length of database: 14,973,337
effective HSP length: 97
effective length of query: 179
effective length of database: 8,903,271
effective search space: 1593685509
effective search space used: 1593685509
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)