Query 023852
Match_columns 276
No_of_seqs 150 out of 691
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 07:07:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023852.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023852hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd09218 TLP-PA allergenic/anti 100.0 1E-82 2.3E-87 571.5 16.9 210 18-227 1-219 (219)
2 smart00205 THN Thaumatin famil 100.0 3.8E-81 8.3E-86 561.3 16.2 210 19-228 1-218 (218)
3 cd09219 TLP-F thaumatin-like p 100.0 5.8E-81 1.3E-85 562.5 15.4 207 19-228 1-229 (229)
4 PF00314 Thaumatin: Thaumatin 100.0 4.6E-77 9.9E-82 533.6 6.1 205 23-228 1-213 (213)
5 cd09215 Thaumatin-like the swe 100.0 8.4E-58 1.8E-62 392.2 13.3 150 19-227 1-157 (157)
6 cd09217 TLP-P thaumatin and al 100.0 1.5E-51 3.3E-56 351.7 13.1 147 19-228 1-151 (151)
7 cd08961 GH64-TLP-SF glycoside 100.0 2.1E-48 4.5E-53 333.0 13.0 145 19-226 1-153 (153)
8 PF04681 Bys1: Blastomyces yea 97.0 0.0046 1E-07 53.7 8.7 44 97-142 72-121 (155)
9 cd09214 GH64-like glycosyl hyd 94.7 0.016 3.4E-07 55.6 1.8 32 100-131 124-156 (319)
10 cd09216 GH64-LPHase-like glyco 92.4 0.25 5.3E-06 48.2 5.6 75 48-130 61-143 (353)
11 cd09220 GH64-GluB-like glycosi 91.5 0.44 9.6E-06 46.7 6.2 80 45-130 58-146 (369)
12 cd00407 Urease_beta Urease bet 51.0 46 0.00099 27.2 5.5 55 13-67 18-93 (101)
13 cd09220 GH64-GluB-like glycosi 50.5 7.7 0.00017 38.3 1.1 22 190-211 321-344 (369)
14 TIGR00192 urease_beta urease, 48.4 53 0.0012 26.8 5.5 56 12-67 17-93 (101)
15 cd09216 GH64-LPHase-like glyco 44.9 11 0.00023 37.1 1.1 22 190-211 310-333 (353)
16 PRK13202 ureB urease subunit b 43.5 66 0.0014 26.4 5.3 53 15-67 21-94 (104)
17 PRK13203 ureB urease subunit b 40.8 55 0.0012 26.8 4.5 54 13-66 18-92 (102)
18 PHA03094 dUTPase; Provisional 38.6 33 0.00071 29.1 3.1 28 43-70 35-68 (144)
19 PRK13201 ureB urease subunit b 34.7 1.1E+02 0.0024 26.2 5.5 55 13-67 18-93 (136)
20 PRK13204 ureB urease subunit b 33.8 1.1E+02 0.0024 26.9 5.5 56 12-67 40-116 (159)
21 PF00699 Urease_beta: Urease b 33.3 75 0.0016 25.9 4.1 54 13-66 17-91 (100)
22 PRK13205 ureB urease subunit b 30.0 97 0.0021 27.2 4.6 56 12-67 17-93 (162)
23 PRK13198 ureB urease subunit b 29.9 1.4E+02 0.003 26.3 5.5 55 13-67 46-121 (158)
24 cd07557 trimeric_dUTPase Trime 29.9 66 0.0014 24.3 3.3 28 43-70 13-46 (92)
25 PF11142 DUF2917: Protein of u 29.7 56 0.0012 24.0 2.7 23 44-66 2-29 (63)
26 PRK13192 bifunctional urease s 25.8 1.6E+02 0.0035 27.0 5.4 54 13-66 127-201 (208)
27 TIGR03096 nitroso_cyanin nitro 25.3 1.6E+02 0.0034 25.2 5.0 23 43-65 93-115 (135)
28 PF00947 Pico_P2A: Picornaviru 25.2 28 0.00062 29.5 0.5 19 76-94 83-101 (127)
29 PRK13986 urease subunit alpha; 25.1 1.7E+02 0.0037 27.1 5.4 55 13-67 123-198 (225)
30 PF05991 NYN_YacP: YacP-like N 22.9 27 0.00058 30.2 -0.1 10 116-125 2-11 (166)
31 PF06282 DUF1036: Protein of u 21.8 1.4E+02 0.0031 24.4 3.9 38 17-54 4-44 (115)
32 PF10633 NPCBM_assoc: NPCBM-as 20.6 1.7E+02 0.0037 21.5 3.9 17 13-29 5-21 (78)
33 cd05468 pVHL von Hippel-Landau 20.3 1.5E+02 0.0032 25.1 3.9 50 15-67 7-56 (141)
No 1
>cd09218 TLP-PA allergenic/antifungal thaumatin-like proteins: plant and animal homologs. This subfamily is represented by the thaumatin-like proteins (TLPs), Cherry Allergen Pru Av 2 TLP, Peach PpAZ44 TLP (a propylene-induced TLP in abscission), the Caenorhabditis elegans thaumatin family member (thn-6), and other plant and animal homologs. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Due to their inducible expression by environmental stresses such as pathogen/pest attack, drought and cold, plant TLPs are classified as the pathogenesis-related (PR) protein family 5 (PR5). Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3; Japanese cedar, Cry j3). TLPs are three-domain, crescent-fold structures with either an electronegative, ele
Probab=100.00 E-value=1e-82 Score=571.54 Aligned_cols=210 Identities=63% Similarity=1.254 Sum_probs=199.0
Q ss_pred EEEEEeCCCCcccceeecCC---CCCCCCeeecCCCeEEEEcCCCCceeEeeeccccCCCCCCcccccCCCCCccccCC-
Q 023852 18 VFTIVNDCKETIWPAITPGE---NFNNGGFPLKSGQSIVFNAPVGWSGRIWGRSGCKFDKNGNGSCLTGACGTSLKCSA- 93 (276)
Q Consensus 18 t~tv~N~C~~tVWpg~~~~~---~~~~~g~~L~pG~s~s~~~p~~WsGriWaRTgCs~d~~g~~~C~TGdCgg~l~C~~- 93 (276)
+|||+|||+||||||++++. .+.++||+|+||++++|++|++|+|||||||||+||+.|+++|+||||++.|+|++
T Consensus 1 tfti~N~C~~tVWp~~~~~~g~~~l~~gGf~L~~g~s~~~~vp~~WsGriWaRTgC~~~~~g~~~C~TGDCgg~l~C~g~ 80 (219)
T cd09218 1 TFTIYNKCPFTVWPGILGNAGHPQLGGGGFELAPGQSRTIDAPSGWSGRFWGRTGCSFDSSGKGSCATGDCGGGLECNGA 80 (219)
T ss_pred CEEEEECCCCCccceecCCCCCCCCCCCCEEcCCCCeEEEeCCCCcceeeeeccCCCCCCCCccccccCCCCCeeecCCC
Confidence 59999999999999999763 46679999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCcceeeeecc---CcccccccccCccCCCceeeecCCCCCCCCCccchhhcccCCCCcccc-cCCeeeeccccccc
Q 023852 94 SGAPPATLAEFTLS---ALDFYDVSLVDGFNLPMSVKPINGKGNCSVAGCDGDLRLTCPSELSVK-SKGKTVACRSACDV 169 (276)
Q Consensus 94 ~g~pPaTlaEftl~---~~d~YDVSlVdGfNlP~~i~P~~g~~~C~~~~C~~dln~~CP~~L~v~-~~G~vv~C~SaC~~ 169 (276)
.+.||+|||||||+ ++|||||||||||||||+|+|+++.++|+.++|.+|||+.||+|||++ .+|++|||+|||++
T Consensus 81 ~g~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~~~C~~~~C~~din~~CP~~L~v~~~~g~vv~C~SaC~~ 160 (219)
T cd09218 81 GGAPPATLAEFTLGGSGGQDFYDVSLVDGYNLPVSITPQGGSGGCRTAGCVADLNAVCPAELQVKNSGGRVVACKSACLA 160 (219)
T ss_pred CCCCCceeEEEEeccCCCCcceeeeeeccccCCEEEEecCCCCCCCCCcccCcccccCCHHHeeccCCCcEeeecCHHHh
Confidence 46799999999997 479999999999999999999876678999999999999999999998 45899999999999
Q ss_pred cCCCcccccCcCCCCcCCCCchhhhhhhccCCCcccccCCCCCCceeecC-CCeEEEec
Q 023852 170 FNTDEYCCRGVYGNPVVCQPTYYSKKFKDACPTAYSYAYDDPTSIFTCAG-TDYVITFC 227 (276)
Q Consensus 170 ~~~d~yCC~G~~~~p~~C~pt~Ys~~FK~~CP~AYsYa~DD~tstftC~~-~~y~ItFC 227 (276)
|++|||||+|+|++|++|+|+.||++||++||+||+|||||++|+|+|.+ ++|+||||
T Consensus 161 f~~~~~CC~g~~~~p~~C~pt~ys~~FK~~CP~Aysya~Dd~~s~~tC~~~~~Y~I~FC 219 (219)
T cd09218 161 FNTDEYCCRGAYGTPETCKPTTYSRLFKNACPQAYSYAYDDPTSTFTCSSGANYVITFC 219 (219)
T ss_pred hCCccceecCCCCCCCcCCCcchhHHHHhhCccccccCCCCCCcceEcCCCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999985 79999998
No 2
>smart00205 THN Thaumatin family. The thaumatin family gathers proteins related to plant pathogenesis. The thaumatin family includes very basic members with extracellular and vacuolar localization. Thaumatin itsel is a potent sweet-tasting protein. Several members of this family display significant in vitro activity of inhibiting hyphal growth or spore germination of various fungi probably by a membrane permeabilizing mechanism.
Probab=100.00 E-value=3.8e-81 Score=561.26 Aligned_cols=210 Identities=59% Similarity=1.174 Sum_probs=199.4
Q ss_pred EEEEeCCCCcccceeecC--CCCCCCCeeecCCCeEEEEcCCCCc-eeEeeeccccCCCCCCcccccCCCCCccccCC-C
Q 023852 19 FTIVNDCKETIWPAITPG--ENFNNGGFPLKSGQSIVFNAPVGWS-GRIWGRSGCKFDKNGNGSCLTGACGTSLKCSA-S 94 (276)
Q Consensus 19 ~tv~N~C~~tVWpg~~~~--~~~~~~g~~L~pG~s~s~~~p~~Ws-GriWaRTgCs~d~~g~~~C~TGdCgg~l~C~~-~ 94 (276)
|||+|||+||||||++++ ..|.++||+|+||++++|++|++|+ |||||||||+||++|+++|+||||+|.++|.+ .
T Consensus 1 fti~N~C~~tVWp~~~~~g~~~l~~gGf~L~~g~s~~~~~p~~w~sGriW~RtgC~~d~~G~~~C~TGdCgG~l~C~g~g 80 (218)
T smart00205 1 FEFVNNCPYTVWAAALPSGKPQLSGGGFELNSGASWQLDAPPGTKMGRIWARTGCNFDASGRGRCATGDCGGVLQCNGWG 80 (218)
T ss_pred CEEEcCCCCceeceecCCCCcccCCCcEecCCCCeEEEECCCCCccceEecccCCCcCCCCccccccCCCCCeeecCCCC
Confidence 799999999999999976 3456789999999999999999996 99999999999999999999999999999997 4
Q ss_pred CCCCcceeeeecc---CcccccccccCccCCCceeeecCCCCCCCCCccchhhcccCCCCcccccCCeeeeccccccccC
Q 023852 95 GAPPATLAEFTLS---ALDFYDVSLVDGFNLPMSVKPINGKGNCSVAGCDGDLRLTCPSELSVKSKGKTVACRSACDVFN 171 (276)
Q Consensus 95 g~pPaTlaEftl~---~~d~YDVSlVdGfNlP~~i~P~~g~~~C~~~~C~~dln~~CP~~L~v~~~G~vv~C~SaC~~~~ 171 (276)
+.||+|||||+|+ ++|||||||||||||||+|.|+++.+.|+.++|.+|||..||+|||++.+|+|+||+|||++|+
T Consensus 81 g~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~~~C~~~~C~~d~~~~CP~~L~v~~~g~vv~C~SaC~~f~ 160 (218)
T smart00205 81 GRPPATLAEFALNQFGGLDFYDVSLVDGFNIPMSFTPTGGSGDCKGAGCTADLNAQCPAELQVPGGGSVVACNSACTVFG 160 (218)
T ss_pred CCCCcceeEEEecCCCCcceeeeEeeccccCCEEEEecCCCCCcCCCcCCCcccccCCHHHccccCCcccccccHhhccC
Confidence 6899999999996 5799999999999999999998777789999999999999999999987789999999999999
Q ss_pred CCcccccCcCCCCcCCCCchhhhhhhccCCCcccccCCCCCCceeecC-CCeEEEecC
Q 023852 172 TDEYCCRGVYGNPVVCQPTYYSKKFKDACPTAYSYAYDDPTSIFTCAG-TDYVITFCS 228 (276)
Q Consensus 172 ~d~yCC~G~~~~p~~C~pt~Ys~~FK~~CP~AYsYa~DD~tstftC~~-~~y~ItFCP 228 (276)
+|||||+|+|++|++|+|+.||++||++||+||+||+||++++|+|.+ ++|+|+|||
T Consensus 161 ~~~yCC~g~~~~~~~C~pt~ys~~FK~~CP~Aysya~Dd~~st~tC~~~~~y~V~FCp 218 (218)
T smart00205 161 TDQYCCTGGQNNPETCPPTNYSRIFKNACPDAYSYAYDDPTSTFTCTGGTNYKVTFCP 218 (218)
T ss_pred CCcceecCCCCCCCCCCCcchhhHHhhhCCccccCccCCCCcceEccCCCCEEEEeCC
Confidence 999999999999999999999999999999999999999999999986 799999998
No 3
>cd09219 TLP-F thaumatin-like proteins: basidiomycete homologs. This subfamily is represented by Lentinula edodes TLG1, a thaumatin-like protein (TLP), as well as, other basidiomycete homologs. In general, TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. TLG1 TLP is involved in lentinan degradation and fruiting body senescence. TLG1 expressed in Escherichia coli and Aspergillus oryzae exhibited beta-1,3-glucanase activity and demonstrated lentinan degrading activity. TLG1 is proposed to be involved in lentinan and cell wall degradation during senescence following harvest and spore diffusion. TLPs are three-domain, crescent-fold structures with either an electronegative, electropositive, or neutral cleft occurring between domains I and II. TLG1 from Lentinula edodes contains the required acidic amino acids conserved in the appropriate positions to possess an electronegative cleft. TLPs within this subfamily contain 13 conserve
Probab=100.00 E-value=5.8e-81 Score=562.50 Aligned_cols=207 Identities=44% Similarity=0.921 Sum_probs=193.1
Q ss_pred EEEEeCCCCcccceeecCC------CCCCCCeeecCCCeEEEEcCCCCc-eeEeeeccccCC-CCCCcccccCCCCCccc
Q 023852 19 FTIVNDCKETIWPAITPGE------NFNNGGFPLKSGQSIVFNAPVGWS-GRIWGRSGCKFD-KNGNGSCLTGACGTSLK 90 (276)
Q Consensus 19 ~tv~N~C~~tVWpg~~~~~------~~~~~g~~L~pG~s~s~~~p~~Ws-GriWaRTgCs~d-~~g~~~C~TGdCgg~l~ 90 (276)
|||+|||+||||||++++. .+.++||+|+||++++|++|++|+ |||||||||+|| ..|+++|+||||||.|+
T Consensus 1 fti~N~C~~TVWPgi~~~~g~~~~~~~~~gGf~L~pg~s~~i~vp~~w~~GRiWgRTgC~~d~~~G~~~C~TGdCgg~l~ 80 (229)
T cd09219 1 FTVKNSCSSTIWPAMFTGGNFIDAVPDQATGWEAAAGGQVEFTVPDNWTAGRIWARTGCDFSDNPGPFSCLTGGCGGGLT 80 (229)
T ss_pred CEEEeCCCCCccceecCCCCCccccccCCCCEecCCCCeEEEECCCCCcccceeccCCCCCCCCCCCCCcccCCCCceee
Confidence 7999999999999999763 245689999999999999999997 999999999999 56999999999999999
Q ss_pred cCCCCCCCcceeeeecc--CcccccccccCccCCCceeeecCCCCCCCCCccchhhcccCCCCcccc--cCCeeeecccc
Q 023852 91 CSASGAPPATLAEFTLS--ALDFYDVSLVDGFNLPMSVKPINGKGNCSVAGCDGDLRLTCPSELSVK--SKGKTVACRSA 166 (276)
Q Consensus 91 C~~~g~pPaTlaEftl~--~~d~YDVSlVdGfNlP~~i~P~~g~~~C~~~~C~~dln~~CP~~L~v~--~~G~vv~C~Sa 166 (276)
|.+.+.||+|||||+|+ ++|||||||||||||||+|.|. . .|+.++|.+|||..||+|||++ .+|+++|||||
T Consensus 81 C~~~g~pP~TlaEftL~~~~~D~YdVSlVDGfNlP~~i~P~--~-~C~~~~C~~dln~~CP~~L~v~~~~~g~~vaC~Sa 157 (229)
T cd09219 81 CENSDQPPASLAEFTLIGGKEDNYDISLVDGFNIPLNITNN--I-TCPQPQCQVDLNVLCPALLRGPLDQKGVNLGCISP 157 (229)
T ss_pred cCCCCCCCcceeeEEecCCCCceeEEEEecccccceEeccC--C-CCCCCcccCCCcccCCHHHccccCCCCccceecCH
Confidence 99888999999999998 4799999999999999999993 2 6999999999999999999997 46889999999
Q ss_pred ccc-cCC--CcccccCcCCCCcCCCC--chhhhhhhccCCCcccccCCCCC--CceeecC---CCeEEEecC
Q 023852 167 CDV-FNT--DEYCCRGVYGNPVVCQP--TYYSKKFKDACPTAYSYAYDDPT--SIFTCAG---TDYVITFCS 228 (276)
Q Consensus 167 C~~-~~~--d~yCC~G~~~~p~~C~p--t~Ys~~FK~~CP~AYsYa~DD~t--stftC~~---~~y~ItFCP 228 (276)
|++ |++ |||||+|+|++|++|+| ++||++||++||+||||||||++ |+|||.+ ++|+|||||
T Consensus 158 C~a~~~~~~~~yCC~g~~~~p~~C~p~~t~ys~~FK~~CP~AYSYa~Dd~ssts~ftC~~~~~~~Y~ItFCP 229 (229)
T cd09219 158 CNRDKNHDDSPSCCTGSHNKPETCPQSGVGNYAYFKDNCPTAYAYAYDEKSHTALWTCGDSKSADYTVTFCP 229 (229)
T ss_pred hhhhccCCCCcccccCCCCCcCCCCCCcccHhHHHHhhCcccccccccCccccccEEeCCCCCCCEEEEeCC
Confidence 999 655 99999999999999999 88999999999999999999999 6799986 799999998
No 4
>PF00314 Thaumatin: Thaumatin family; InterPro: IPR001938 Thaumatin [] is an intensely sweet-tasting protein, 100 000 times sweeter than sucrose on a molar basis [] found in berries from Thaumatococcus daniellii, a tropical flowering plant known as Katemfe, it is induced by attack by viroids, which are single-stranded unencapsulated RNA molecules that do not code for protein. Thaumatin consists of about 200 residues and contains 8 disulphide bonds. Like other PR proteins, thaumatin is predicted to have a mainly beta structure, with a high content of beta-turns and little helix []. Several stress-induced proteins of plants have been found to be related to thaumatins: A maize alpha-amylase/trypsin inhibitor Two tobacco pathogenesis-related proteins: PR-R major and minor forms,which are induced after infection with viruses Salt-induced protein NP24 from tomato Osmotin, a salt-induced protein from tobacco[] Osmotin-like proteins OSML13, OSML15 and OSML81 from potato [] P21, a leaf protein from soybean PWIR2, a leaf protein from wheat [] Zeamatin, a maize antifunal protein [] This protein is also referred to as pathogenesis-related group 5 (PR5), as many thaumatin-like proteins accumulate in plants in response to infection by a pathogen and possess antifungal activity []. The proteins are involved in systematically acquired resistance and stress response in plants, although their precise role is unknown [].; PDB: 3G7M_A 2I0W_A 1AUN_A 1Z3Q_A 1KWN_A 2OQN_A 1THW_A 1LY0_A 2D8O_A 1LR3_A ....
Probab=100.00 E-value=4.6e-77 Score=533.60 Aligned_cols=205 Identities=61% Similarity=1.210 Sum_probs=169.6
Q ss_pred eCCCCcccceeecCC---CCCCCCeeecCCCeEEEEcCCCCceeEeeeccccCCCCCCcccccCCCCCccccCC-CCCCC
Q 023852 23 NDCKETIWPAITPGE---NFNNGGFPLKSGQSIVFNAPVGWSGRIWGRSGCKFDKNGNGSCLTGACGTSLKCSA-SGAPP 98 (276)
Q Consensus 23 N~C~~tVWpg~~~~~---~~~~~g~~L~pG~s~s~~~p~~WsGriWaRTgCs~d~~g~~~C~TGdCgg~l~C~~-~g~pP 98 (276)
|||+||||||++++. .+.++||+|+||+++++.+|++|+|||||||||++|+.|+++|+||||+++++|.+ .+.+|
T Consensus 1 N~C~~tvWp~~~~~~~~~~~~~~g~~l~~g~s~~~~~p~~WsGriW~RTgC~~~~~g~~~C~TGdCgg~~~C~~~~~~~P 80 (213)
T PF00314_consen 1 NNCPFTVWPAILPNAGSPPLSTGGFRLDPGQSWSLTVPAGWSGRIWARTGCSFDGGGRGSCATGDCGGRLECNGAGGSPP 80 (213)
T ss_dssp E-SSS-EEEEEETTTSSSEEEEEEEEE-TTEEEEEE--TTESEEEEEEEEEEEETTSBEEEEES-STTBSSSSS----SS
T ss_pred CcCCCCeeeeecCCCCCCcCCCCCEEcCCCCeEEEecCccccceeeecCCCcCCCCCCcccccCCCCcccccccccCccc
Confidence 999999999999874 34568999999999999999999999999999999999999999999999999998 57899
Q ss_pred cceeeeecc---CcccccccccCccCCCceeeecCCCCCCCCCccchhhcccCCCCcccccCCeeeeccccccccCCCcc
Q 023852 99 ATLAEFTLS---ALDFYDVSLVDGFNLPMSVKPINGKGNCSVAGCDGDLRLTCPSELSVKSKGKTVACRSACDVFNTDEY 175 (276)
Q Consensus 99 aTlaEftl~---~~d~YDVSlVdGfNlP~~i~P~~g~~~C~~~~C~~dln~~CP~~L~v~~~G~vv~C~SaC~~~~~d~y 175 (276)
+|||||+|+ ++|||||||||||||||+|+|++ ...|+.++|.+||+..||.|||++..+++++|+|+|.+|++|+|
T Consensus 81 ~TlaEftl~~~~~~d~YDVSlVdGfNlP~~i~p~~-~~~C~~~~C~~di~~~CP~~l~v~~~~~vv~C~SaC~~~~~~~~ 159 (213)
T PF00314_consen 81 ATLAEFTLNGSNGQDFYDVSLVDGFNLPMSISPSG-GSNCRSPGCPADINSWCPSELQVKNSDGVVGCKSACDAFNTDEY 159 (213)
T ss_dssp --EEEEEEEETTTEEEEEEESTT-BSS-EEEEESS-SSSSSSEEE-S-HHHHE-CCCEEETTSSTTEE--HHHHH-SHHH
T ss_pred ceeEEEEeccCCCcceEEEEeeeeecCChhhccCC-CCccccccCccccccccchhheeeccCceeeecccceeccCCcc
Confidence 999999995 58999999999999999999995 57899999999999999999999866669999999999999999
Q ss_pred cccCcCCCCcCCCCchhhhhhhccCCCcccccCCCCCCceeecC-CCeEEEecC
Q 023852 176 CCRGVYGNPVVCQPTYYSKKFKDACPTAYSYAYDDPTSIFTCAG-TDYVITFCS 228 (276)
Q Consensus 176 CC~G~~~~p~~C~pt~Ys~~FK~~CP~AYsYa~DD~tstftC~~-~~y~ItFCP 228 (276)
||+|+|.+|++|+|++|+++||++||+||+|||||++|+|+|.+ ++|+|||||
T Consensus 160 CC~g~~~~~~~C~~~~ys~~fK~~CP~AYsya~DD~~s~ftC~~~~~y~ItFCP 213 (213)
T PF00314_consen 160 CCRGAYNTPDTCPPTNYSQFFKKACPDAYSYAYDDQTSTFTCPAGTNYTITFCP 213 (213)
T ss_dssp HTTCCS-TTSCS---HHHHHHHHH-TTSBSSTTSHTTT-EEEETT-EEEEEEST
T ss_pred ccccccCCCcccccchhhhhhhhhCcccccccccCCCcceECCCCCCEEEEeCc
Confidence 99999999999999999999999999999999999999999986 699999999
No 5
>cd09215 Thaumatin-like the sweet-tasting protein, thaumatin, and thaumatin-like proteins involved in host defense. This family is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii and thaumatin-like proteins (TLPs) involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs included in this family are such proteins as zeamatin, found in high concentrations in cereal seeds; osmotin, a salt-induced protein in osmotically stressed plants; and PpAZ44, a propylene-induced TLP in abscission of young fruit. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun
Probab=100.00 E-value=8.4e-58 Score=392.23 Aligned_cols=150 Identities=55% Similarity=1.149 Sum_probs=136.0
Q ss_pred EEEEeCCCCcccceeecCC--CCCCCCeeecCCCeEEEEcCCCCceeEeeeccccCCC-CCCcccccCCCCCccccCCCC
Q 023852 19 FTIVNDCKETIWPAITPGE--NFNNGGFPLKSGQSIVFNAPVGWSGRIWGRSGCKFDK-NGNGSCLTGACGTSLKCSASG 95 (276)
Q Consensus 19 ~tv~N~C~~tVWpg~~~~~--~~~~~g~~L~pG~s~s~~~p~~WsGriWaRTgCs~d~-~g~~~C~TGdCgg~l~C~~~g 95 (276)
|||+|||+||||||++++. .+.++||+|+||+++++.+|++|+|||||||+|+||+ .|++.|+||||+++++|++.+
T Consensus 1 ~ti~N~C~~tVWPg~~~~~g~~~~~gGf~L~~g~s~~~~~p~~wsGriWgRTgC~~~~~~g~~~C~TGdCgg~l~C~g~g 80 (157)
T cd09215 1 FTITNRCPYTIWPAIFTQVGKGPYTGGFELNPGETKSFDVSAGWQGRIWARTNCSFNANSGGNACLTGDCNGGLNCQGTG 80 (157)
T ss_pred CEEEcCCCCCeeceecCCCCCCCCCCCEecCCCCeeEEecCCCCeEeeecccccccCCCCCCCCcccCCCCceeecCCCC
Confidence 7999999999999998753 3567899999999999999999999999999999998 799999999999999999878
Q ss_pred CCCcceeeeecc---CcccccccccCccCCCceeeecCCCCCCCCCccchhhcccCCCCcccccCCeeeeccccccccCC
Q 023852 96 APPATLAEFTLS---ALDFYDVSLVDGFNLPMSVKPINGKGNCSVAGCDGDLRLTCPSELSVKSKGKTVACRSACDVFNT 172 (276)
Q Consensus 96 ~pPaTlaEftl~---~~d~YDVSlVdGfNlP~~i~P~~g~~~C~~~~C~~dln~~CP~~L~v~~~G~vv~C~SaC~~~~~ 172 (276)
.||+|||||+|+ ++|||||||||||||||+|+|+. +.|+.++|.+
T Consensus 81 ~pp~TlaEftl~~~~~~d~YdVSlVdG~NlP~~i~P~~--~~C~~~~C~~------------------------------ 128 (157)
T cd09215 81 GPPATLAEFTLSGGGGLDYYDISLVDGYNLPMSITPQP--GECPTPICAA------------------------------ 128 (157)
T ss_pred CCCcceEEEEecCCCCcceeEEEeeccccCCEEEecCC--CCCCCCcccc------------------------------
Confidence 899999999996 47999999999999999999974 3355444432
Q ss_pred CcccccCcCCCCcCCCCchhhhhhhccCCCcccccCCCCCCceeecC-CCeEEEec
Q 023852 173 DEYCCRGVYGNPVVCQPTYYSKKFKDACPTAYSYAYDDPTSIFTCAG-TDYVITFC 227 (276)
Q Consensus 173 d~yCC~G~~~~p~~C~pt~Ys~~FK~~CP~AYsYa~DD~tstftC~~-~~y~ItFC 227 (276)
||+||||||||++|+|+|++ ++|+|+||
T Consensus 129 ---------------------------Cp~Aysya~Dd~~s~~tC~~~~~y~v~FC 157 (157)
T cd09215 129 ---------------------------CPDAYSYAYDDQTSTFTCPGGAGYEVVFC 157 (157)
T ss_pred ---------------------------CccccccCCCCCccceECCCCCCEEEEeC
Confidence 99999999999999999986 79999998
No 6
>cd09217 TLP-P thaumatin and allergenic/antifungal thaumatin-like proteins: plant homologs. This subfamily is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii, allergenic/antifungal Thaumatin-like proteins (TLPs), and related plant proteins. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs in this subfamily include such proteins as zeamatin, found in high concentrations in cereal seeds, and osmotin, a salt-induced protein in osmotically stressed plants. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3
Probab=100.00 E-value=1.5e-51 Score=351.73 Aligned_cols=147 Identities=57% Similarity=1.155 Sum_probs=131.8
Q ss_pred EEEEeCCCCcccceeecCCCCCCCCeeecCCCeEEEEcCCC-CceeEeeeccccCCCCCCcccccCCCCCccccCCCCCC
Q 023852 19 FTIVNDCKETIWPAITPGENFNNGGFPLKSGQSIVFNAPVG-WSGRIWGRSGCKFDKNGNGSCLTGACGTSLKCSASGAP 97 (276)
Q Consensus 19 ~tv~N~C~~tVWpg~~~~~~~~~~g~~L~pG~s~s~~~p~~-WsGriWaRTgCs~d~~g~~~C~TGdCgg~l~C~~~g~p 97 (276)
|||+|||+||||||+++. ++||+|+||+++++++|++ |+|||||||+|+||+.|+++|+|||||++++|.+.+.|
T Consensus 1 ~~~~N~C~~tvWp~~~~~----~gG~~L~~g~~~~~~~p~~~w~griW~RTgC~~~~~g~~~C~TGdCgg~l~C~~~g~p 76 (151)
T cd09217 1 FTITNNCGYTVWPAATPV----GGGRQLNPGQSWTIDVPAGTAGGRIWGRTGCSFDASGRGSCQTGDCGGVLSCTGSGKP 76 (151)
T ss_pred CEEEeCCCCcccceEecC----CCCEeCCCCCeEEEEcCCCCceEEEeeecCCCcCCCCCCcccccCCCCeeecCCCCCC
Confidence 799999999999999973 6899999999999999997 99999999999999999999999999999999987899
Q ss_pred Ccceeeeecc--CcccccccccCccCCCceeeecCCCCCCCCCccchhhcccCCCCcccccCCeeeeccccccccCCCcc
Q 023852 98 PATLAEFTLS--ALDFYDVSLVDGFNLPMSVKPINGKGNCSVAGCDGDLRLTCPSELSVKSKGKTVACRSACDVFNTDEY 175 (276)
Q Consensus 98 PaTlaEftl~--~~d~YDVSlVdGfNlP~~i~P~~g~~~C~~~~C~~dln~~CP~~L~v~~~G~vv~C~SaC~~~~~d~y 175 (276)
|+||+||+|+ ++||||||+||||||||+|.|++ ..|+.++|..|
T Consensus 77 p~Tl~E~tl~~~~~d~YdISlVdG~NlP~~i~P~~--~~C~~~~C~~d-------------------------------- 122 (151)
T cd09217 77 PATLAEYTLNQSGQDFYDISLVDGFNVPMDFSPTG--GGCHAIPCAAN-------------------------------- 122 (151)
T ss_pred CceeEEEEecCCCCccEEEEeecccccceEEecCC--CCCCCCcCCCC--------------------------------
Confidence 9999999996 57999999999999999999973 23544444320
Q ss_pred cccCcCCCCcCCCCchhhhhhhccCCCcccccCCCCCCceeecC-CCeEEEecC
Q 023852 176 CCRGVYGNPVVCQPTYYSKKFKDACPTAYSYAYDDPTSIFTCAG-TDYVITFCS 228 (276)
Q Consensus 176 CC~G~~~~p~~C~pt~Ys~~FK~~CP~AYsYa~DD~tstftC~~-~~y~ItFCP 228 (276)
||+||+|++|| .++|+|+. .+|+|+|||
T Consensus 123 ------------------------C~~ay~~~~D~-~~~~~C~~~~~~~v~fCp 151 (151)
T cd09217 123 ------------------------CPDAYSYPKDP-TTTFTCPGGTNYRIVFCP 151 (151)
T ss_pred ------------------------CchHhcCCCCC-CceEeCCCCCCEEEEeCC
Confidence 99999999995 79999985 599999998
No 7
>cd08961 GH64-TLP-SF glycoside hydrolase family 64 (beta-1,3-glucanases which produce specific pentasaccharide oligomers) and thaumatin-like proteins. This superfamily includes glycoside hydrolases of family 64 (GH64), these are mostly bacterial beta-1,3-glucanases which cleave long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers and are implicated in fungal cell wall degradation. Also included in this superfamily are thaumatin, the sweet-tasting protein from the African berry Thaumatococcus daniellii, and thaumatin-like proteins (TLPs) which are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Like GH64s, some TLPs also hydrolyze the beta-1,3-glucans of the type commonly found in fungal walls. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. Several members of the plant TLP
Probab=100.00 E-value=2.1e-48 Score=333.04 Aligned_cols=145 Identities=48% Similarity=0.821 Sum_probs=125.8
Q ss_pred EEEEeCCCCcccceeecCC---CCCCCCeeecCCCeEEEEcCCCCceeEeeeccccCCCCCCcccccCCCCCccccCC-C
Q 023852 19 FTIVNDCKETIWPAITPGE---NFNNGGFPLKSGQSIVFNAPVGWSGRIWGRSGCKFDKNGNGSCLTGACGTSLKCSA-S 94 (276)
Q Consensus 19 ~tv~N~C~~tVWpg~~~~~---~~~~~g~~L~pG~s~s~~~p~~WsGriWaRTgCs~d~~g~~~C~TGdCgg~l~C~~-~ 94 (276)
|||+|||+|||||+++++. .+..+||+|+||++++|++|++|+||||+||||+++..+++.|+||||++ +.|.+ .
T Consensus 1 ~ti~NnC~~tVWp~i~~~~~~~~~~~gg~~L~pG~s~si~vP~~wsGRIW~RtgC~~~~~g~g~C~TGdcgg-~~c~g~~ 79 (153)
T cd08961 1 LTITNNCGYQVWIYNLGTELSSAPDASGPGLAPGRSTTIQIPKGFSGRIWFRTGCSMDFSGTTGCLTQDPGV-VNPTDPN 79 (153)
T ss_pred CEEEeCCCCcCcceECCCCCCCCccCcccccCCCCcEEEEecCCceEEEEEecCCcccCCCCccccccCCCC-cccCCCC
Confidence 7999999999999998763 34568999999999999999999999999999999988999999999998 56654 6
Q ss_pred CCCCcceeeeecc---CcccccccccCccCCCceeeecCCCCCCCCCccchhhcccCCCCcccccCCeeeeccccccccC
Q 023852 95 GAPPATLAEFTLS---ALDFYDVSLVDGFNLPMSVKPINGKGNCSVAGCDGDLRLTCPSELSVKSKGKTVACRSACDVFN 171 (276)
Q Consensus 95 g~pPaTlaEftl~---~~d~YDVSlVdGfNlP~~i~P~~g~~~C~~~~C~~dln~~CP~~L~v~~~G~vv~C~SaC~~~~ 171 (276)
+.||+|||||||+ ++|||||||||||||||+|+|+.+.+. |+.
T Consensus 80 g~pp~TlaEfTl~~~~~~dfydISlVDGfNlP~~i~p~~~~g~----------------------------C~~------ 125 (153)
T cd08961 80 RDPPFTLAEFTLNDFNSGDFIDSSLVDGFNAPMTVGPRRGDGT----------------------------CLS------ 125 (153)
T ss_pred CCCCcceEEEEecCCCCcceEEEEeecccCCCEEEEeccCCCC----------------------------ccc------
Confidence 7899999999996 479999999999999999999733211 221
Q ss_pred CCcccccCcCCCCcCCCCchhhhhhhccCCCcccccCCCCCCceeecC-CCeEEEe
Q 023852 172 TDEYCCRGVYGNPVVCQPTYYSKKFKDACPTAYSYAYDDPTSIFTCAG-TDYVITF 226 (276)
Q Consensus 172 ~d~yCC~G~~~~p~~C~pt~Ys~~FK~~CP~AYsYa~DD~tstftC~~-~~y~ItF 226 (276)
.. |||+|||||+.++|+|++ .+|.|+|
T Consensus 126 ------------------~~----------~~~~~~~~~~~~~~~c~~~~~~~~~~ 153 (153)
T cd08961 126 ------------------TG----------DAYSYAFDDHESTFTCGGGRNYSLTF 153 (153)
T ss_pred ------------------cc----------cccccCCCCccceEEcCCCCceEEeC
Confidence 10 899999999999999985 5999998
No 8
>PF04681 Bys1: Blastomyces yeast-phase-specific protein; InterPro: IPR006771 The pathogenic dimorphic fungal organism Blastomyces dermatitidis exists as a budding yeast at 37 degrees C and as a mycelium at 25 degrees C. Bys1 is expressed specifically in the high temperature, unicellular yeast morphology and codes for a protein of 18.6 kDa that contains multiple putative phosphorylation sites, a hydrophobic N terminus, and two 34-amino-acid domains with similarly spaced nine-amino-acid degenerative repeating motifs []. The molecular function of this protein is not known.
Probab=96.99 E-value=0.0046 Score=53.68 Aligned_cols=44 Identities=27% Similarity=0.383 Sum_probs=33.2
Q ss_pred CCcceeeeecc---CcccccccccCccC---CCceeeecCCCCCCCCCccch
Q 023852 97 PPATLAEFTLS---ALDFYDVSLVDGFN---LPMSVKPINGKGNCSVAGCDG 142 (276)
Q Consensus 97 pPaTlaEftl~---~~d~YDVSlVdGfN---lP~~i~P~~g~~~C~~~~C~~ 142 (276)
.|.|..||+|. .+-|||+|.|.|.. -+|.|.|.+ ..|..+-|..
T Consensus 72 ~pqt~FaYtL~~d~~~VwYDLSdvfGdPF~G~~v~v~ps~--~~Cp~I~Wp~ 121 (155)
T PF04681_consen 72 SPQTIFAYTLVDDNNQVWYDLSDVFGDPFAGHKVTVNPSD--PSCPSIVWPN 121 (155)
T ss_pred CceeEEEEEecCCCceEEEECccccCCCcCCCEEEEecCC--CCCCceECCC
Confidence 68899999996 37899999999964 356777763 3577666653
No 9
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=94.70 E-value=0.016 Score=55.65 Aligned_cols=32 Identities=25% Similarity=0.466 Sum_probs=27.5
Q ss_pred ceeeeecc-CcccccccccCccCCCceeeecCC
Q 023852 100 TLAEFTLS-ALDFYDVSLVDGFNLPMSVKPING 131 (276)
Q Consensus 100 TlaEftl~-~~d~YDVSlVdGfNlP~~i~P~~g 131 (276)
..+|||++ ..-|-++|.||-|.+||.|+-.+.
T Consensus 124 df~EFT~n~~~l~~N~T~VD~~~lPl~l~l~~~ 156 (319)
T cd09214 124 DFIEFTYNATGLWGNTTRVDAFGIPLTLRLIGK 156 (319)
T ss_pred EEEEEEecCCceEecccceeeeccCeEEEEEcC
Confidence 34899997 578999999999999999997753
No 10
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=92.41 E-value=0.25 Score=48.23 Aligned_cols=75 Identities=28% Similarity=0.346 Sum_probs=47.2
Q ss_pred CCCeEEEEcCCCCceeEeeeccccCCCCCCcccccCCCCCccccCC---CCCCCc----ceeeeecc-CcccccccccCc
Q 023852 48 SGQSIVFNAPVGWSGRIWGRSGCKFDKNGNGSCLTGACGTSLKCSA---SGAPPA----TLAEFTLS-ALDFYDVSLVDG 119 (276)
Q Consensus 48 pG~s~s~~~p~~WsGriWaRTgCs~d~~g~~~C~TGdCgg~l~C~~---~g~pPa----TlaEftl~-~~d~YDVSlVdG 119 (276)
+|++.++.+|. ++||||=-.|=. =.|.=.. +..+.=.. ..-|-. ..+|||++ ..-|=++|.||-
T Consensus 61 ~G~~~tvtiP~-~sgRiyfS~g~~----L~F~~~~---~~~lv~Ps~~NpsDpN~~~~~~f~EfT~n~~gl~~N~T~VD~ 132 (353)
T cd09216 61 PGDTTTVLPPR-MSGRIYFSLGSK----LRFKVVT---NPALVQPAGWNPSDPNFNILHDWVEFTFNDAGLFCNTTQVDM 132 (353)
T ss_pred CCCceEEcccc-cCcEEEEEcCCe----eEEEecC---CCcccCCCCCCCCCCCccceEEEEEEEecCCceEecccceee
Confidence 57888999998 999999543210 0121111 11121111 011222 34899997 567899999999
Q ss_pred cCCCceeeecC
Q 023852 120 FNLPMSVKPIN 130 (276)
Q Consensus 120 fNlP~~i~P~~ 130 (276)
|.+||.|+-.+
T Consensus 133 ~~~P~~l~l~~ 143 (353)
T cd09216 133 FSAPLAIGLRG 143 (353)
T ss_pred eccceEEEEec
Confidence 99999998764
No 11
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=91.45 E-value=0.44 Score=46.72 Aligned_cols=80 Identities=26% Similarity=0.372 Sum_probs=49.6
Q ss_pred eec-CCCeEEEEcCCCCceeEeeeccccCCCCCCcccccCCCCCccccCC---CCCCCc----ceeeeecc-Cccccccc
Q 023852 45 PLK-SGQSIVFNAPVGWSGRIWGRSGCKFDKNGNGSCLTGACGTSLKCSA---SGAPPA----TLAEFTLS-ALDFYDVS 115 (276)
Q Consensus 45 ~L~-pG~s~s~~~p~~WsGriWaRTgCs~d~~g~~~C~TGdCgg~l~C~~---~g~pPa----TlaEftl~-~~d~YDVS 115 (276)
.|. +|++.++.+|.-++||||=-.+=. -.|. ...+ |..+.=.. ..-|-. ..+|||++ ..-|=++|
T Consensus 58 pl~~~G~~~titiP~i~sgRIyfS~g~~----L~F~-~~~~-g~glv~Ps~~NpsDpN~~~~~~f~EfT~n~~~l~~N~S 131 (369)
T cd09220 58 PLGAPGSTTTVTIPILAGGRIWFSVDDK----LTFL-LNPG-GPALVEPSVTNPSDPNYNKNWGFCEFTYNSGQLYANIS 131 (369)
T ss_pred ecCCCCCceeEEcccccceEEEEEcCCe----EEEE-ecCC-CccccCCCcCCCCCCCccceEEEEEEEecCCceEeccc
Confidence 443 488899999998999999543211 0111 1111 21111111 011222 34899997 57789999
Q ss_pred ccCccCCCceeeecC
Q 023852 116 LVDGFNLPMSVKPIN 130 (276)
Q Consensus 116 lVdGfNlP~~i~P~~ 130 (276)
.||-|.+||.|+-.+
T Consensus 132 ~VD~~~~P~~l~l~~ 146 (369)
T cd09220 132 YVDFVGLPLGLSLTT 146 (369)
T ss_pred ceeeeccCeEEEEEc
Confidence 999999999998664
No 12
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=51.03 E-value=46 Score=27.20 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=38.6
Q ss_pred ceeeeEEEEEeCCCCcccceee-----cCCC---------------CCCCCeeecCCCeEEEEc-CCCCceeEeee
Q 023852 13 GESARVFTIVNDCKETIWPAIT-----PGEN---------------FNNGGFPLKSGQSIVFNA-PVGWSGRIWGR 67 (276)
Q Consensus 13 ~~~a~t~tv~N~C~~tVWpg~~-----~~~~---------------~~~~g~~L~pG~s~s~~~-p~~WsGriWaR 67 (276)
.-...+++|+|...-+|++|.. .+.. ..++..+.+||+++++++ |-+=..+|+|-
T Consensus 18 gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~~G~r~v~G~ 93 (101)
T cd00407 18 GREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELVPIGGKRRVYGF 93 (101)
T ss_pred CCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEEEccCceEEEcc
Confidence 3456899999999999999974 1211 245667889999999986 33333456553
No 13
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=50.53 E-value=7.7 Score=38.26 Aligned_cols=22 Identities=32% Similarity=0.724 Sum_probs=19.8
Q ss_pred chhhhhhhccCC--CcccccCCCC
Q 023852 190 TYYSKKFKDACP--TAYSYAYDDP 211 (276)
Q Consensus 190 t~Ys~~FK~~CP--~AYsYa~DD~ 211 (276)
++|++++++.-+ .+|.|||||-
T Consensus 321 NhYar~vH~~~~dg~gYaFpYDDV 344 (369)
T cd09220 321 NHYSRIVHENNPDGRGYAFPYDDV 344 (369)
T ss_pred hHHHHHHHHhccCCCeeccccccc
Confidence 679999999988 7899999995
No 14
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=48.42 E-value=53 Score=26.82 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=39.1
Q ss_pred cceeeeEEEEEeCCCCcccceee-----cCCC---------------CCCCCeeecCCCeEEEEc-CCCCceeEeee
Q 023852 12 MGESARVFTIVNDCKETIWPAIT-----PGEN---------------FNNGGFPLKSGQSIVFNA-PVGWSGRIWGR 67 (276)
Q Consensus 12 ~~~~a~t~tv~N~C~~tVWpg~~-----~~~~---------------~~~~g~~L~pG~s~s~~~-p~~WsGriWaR 67 (276)
+.-...+++|+|...-+|++|.. .+.. ..++..+.+||+++++++ |-+=..+|+|-
T Consensus 17 ~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG~r~v~G~ 93 (101)
T TIGR00192 17 EGRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVAIGGNRRIYGF 93 (101)
T ss_pred CCCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEEccCceEEEcc
Confidence 34466899999999999999974 1211 245667889999999986 43333466653
No 15
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=44.94 E-value=11 Score=37.08 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=19.4
Q ss_pred chhhhhhhccCC--CcccccCCCC
Q 023852 190 TYYSKKFKDACP--TAYSYAYDDP 211 (276)
Q Consensus 190 t~Ys~~FK~~CP--~AYsYa~DD~ 211 (276)
++|++++++.-. .||.|||||-
T Consensus 310 NhYar~vH~~~~dgk~YaF~YDDV 333 (353)
T cd09216 310 NHYAKVVHEAMADGKAYGFAFDDV 333 (353)
T ss_pred hHHHHHHHHhccCCCeeecCcccc
Confidence 569999999987 6899999994
No 16
>PRK13202 ureB urease subunit beta; Reviewed
Probab=43.52 E-value=66 Score=26.43 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=37.4
Q ss_pred eeeEEEEEeCCCCcccceee-----cCCC---------------CCCCCeeecCCCeEEEEc-CCCCceeEeee
Q 023852 15 SARVFTIVNDCKETIWPAIT-----PGEN---------------FNNGGFPLKSGQSIVFNA-PVGWSGRIWGR 67 (276)
Q Consensus 15 ~a~t~tv~N~C~~tVWpg~~-----~~~~---------------~~~~g~~L~pG~s~s~~~-p~~WsGriWaR 67 (276)
...+++|+|...-+|++|.. .+.. ..++..+.+||+++++++ |-+=..+|+|-
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG~r~v~G~ 94 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVPLGGRREVPGL 94 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEEccCCeEEEcC
Confidence 46799999999999999974 1211 245667889999999986 43333456653
No 17
>PRK13203 ureB urease subunit beta; Reviewed
Probab=40.81 E-value=55 Score=26.76 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=37.9
Q ss_pred ceeeeEEEEEeCCCCcccceee-----cCCC---------------CCCCCeeecCCCeEEEEc-CCCCceeEee
Q 023852 13 GESARVFTIVNDCKETIWPAIT-----PGEN---------------FNNGGFPLKSGQSIVFNA-PVGWSGRIWG 66 (276)
Q Consensus 13 ~~~a~t~tv~N~C~~tVWpg~~-----~~~~---------------~~~~g~~L~pG~s~s~~~-p~~WsGriWa 66 (276)
.-...+++|+|...-+|++|.. .+.. ..++..+.+||+++++++ +-+=..+|+|
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG~r~v~G 92 (102)
T PRK13203 18 GRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELVPLAGARRVYG 92 (102)
T ss_pred CCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEEEccCceEEEc
Confidence 3456899999999999999974 1211 245667889999999986 3232345655
No 18
>PHA03094 dUTPase; Provisional
Probab=38.58 E-value=33 Score=29.11 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=23.5
Q ss_pred CeeecCCCeEE------EEcCCCCceeEeeeccc
Q 023852 43 GFPLKSGQSIV------FNAPVGWSGRIWGRSGC 70 (276)
Q Consensus 43 g~~L~pG~s~s------~~~p~~WsGriWaRTgC 70 (276)
.+.|.||+... +.+|.+|.|.|++|.+-
T Consensus 35 ~~~i~P~~~~lv~Tg~~i~ip~g~~g~i~~RSsl 68 (144)
T PHA03094 35 DYTVPPKERILVKTDISLSIPKFCYGRIAPRSGL 68 (144)
T ss_pred CeEECCCCEEEEEcCeEEEcCCCEEEEEEccccc
Confidence 36889999876 67899999999999664
No 19
>PRK13201 ureB urease subunit beta; Reviewed
Probab=34.67 E-value=1.1e+02 Score=26.24 Aligned_cols=55 Identities=11% Similarity=0.104 Sum_probs=38.8
Q ss_pred ceeeeEEEEEeCCCCcccceee-----cCCC---------------CCCCCeeecCCCeEEEEc-CCCCceeEeee
Q 023852 13 GESARVFTIVNDCKETIWPAIT-----PGEN---------------FNNGGFPLKSGQSIVFNA-PVGWSGRIWGR 67 (276)
Q Consensus 13 ~~~a~t~tv~N~C~~tVWpg~~-----~~~~---------------~~~~g~~L~pG~s~s~~~-p~~WsGriWaR 67 (276)
.-...+++|+|.-.-+|++|.. .+.. ..++..+.+||+++++.+ |-+=..+|+|-
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~igG~r~V~Gf 93 (136)
T PRK13201 18 HHPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLVEYAGKRKIFGF 93 (136)
T ss_pred CCCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEEEccCceEEEcc
Confidence 3456899999999999999974 1211 245667889999999986 43333466653
No 20
>PRK13204 ureB urease subunit beta; Reviewed
Probab=33.83 E-value=1.1e+02 Score=26.90 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=39.5
Q ss_pred cceeeeEEEEEeCCCCcccceee-----cCCC---------------CCCCCeeecCCCeEEEEc-CCCCceeEeee
Q 023852 12 MGESARVFTIVNDCKETIWPAIT-----PGEN---------------FNNGGFPLKSGQSIVFNA-PVGWSGRIWGR 67 (276)
Q Consensus 12 ~~~~a~t~tv~N~C~~tVWpg~~-----~~~~---------------~~~~g~~L~pG~s~s~~~-p~~WsGriWaR 67 (276)
+.-...+++|+|.-.-+|.+|.. .+.. ..++..+.+||+++++.+ |-+=..+|+|-
T Consensus 40 ~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~~gG~r~V~Gf 116 (159)
T PRK13204 40 QGRPRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLVPFAGKRFIFGF 116 (159)
T ss_pred CCCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEEEccCceEEEcc
Confidence 34456899999999999999974 1211 245667889999999986 43334467664
No 21
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=33.25 E-value=75 Score=25.92 Aligned_cols=54 Identities=15% Similarity=0.265 Sum_probs=32.2
Q ss_pred ceeeeEEEEEeCCCCcccceee-----cCCC---------------CCCCCeeecCCCeEEEEc-CCCCceeEee
Q 023852 13 GESARVFTIVNDCKETIWPAIT-----PGEN---------------FNNGGFPLKSGQSIVFNA-PVGWSGRIWG 66 (276)
Q Consensus 13 ~~~a~t~tv~N~C~~tVWpg~~-----~~~~---------------~~~~g~~L~pG~s~s~~~-p~~WsGriWa 66 (276)
.-...+++|+|.-.-+|.+|.. .+.. ..++..+.+||+++++.+ |-+=..+|+|
T Consensus 17 gr~~~~l~V~N~GDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~LV~~gG~r~v~G 91 (100)
T PF00699_consen 17 GRERITLEVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVELVPIGGNRRVYG 91 (100)
T ss_dssp TSEEEEEEEEE-SSS-EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEEE-STT-EE-S
T ss_pred CCcEEEEEEEeCCCcceEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEEEEEccCCeEEEc
Confidence 3457899999999999999963 1211 245667889999999986 4333345655
No 22
>PRK13205 ureB urease subunit beta; Reviewed
Probab=30.01 E-value=97 Score=27.21 Aligned_cols=56 Identities=16% Similarity=0.219 Sum_probs=38.6
Q ss_pred cceeeeEEEEEeCCCCcccceee-----cCCC---------------CCCCCeeecCCCeEEEEc-CCCCceeEeee
Q 023852 12 MGESARVFTIVNDCKETIWPAIT-----PGEN---------------FNNGGFPLKSGQSIVFNA-PVGWSGRIWGR 67 (276)
Q Consensus 12 ~~~~a~t~tv~N~C~~tVWpg~~-----~~~~---------------~~~~g~~L~pG~s~s~~~-p~~WsGriWaR 67 (276)
+.-...+++|+|.-.-+|.+|.. .+.. ..++..+.+||+++++.+ |-+=..+|+|-
T Consensus 17 ~GR~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV~igG~R~V~Gf 93 (162)
T PRK13205 17 VGREAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLVAIGGDRIVAGF 93 (162)
T ss_pred CCCcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEEEccCceEEEcc
Confidence 34466999999999999999974 1211 245567889999999886 32223455553
No 23
>PRK13198 ureB urease subunit beta; Reviewed
Probab=29.92 E-value=1.4e+02 Score=26.25 Aligned_cols=55 Identities=11% Similarity=0.155 Sum_probs=38.9
Q ss_pred ceeeeEEEEEeCCCCcccceee-----cCCC---------------CCCCCeeecCCCeEEEEc-CCCCceeEeee
Q 023852 13 GESARVFTIVNDCKETIWPAIT-----PGEN---------------FNNGGFPLKSGQSIVFNA-PVGWSGRIWGR 67 (276)
Q Consensus 13 ~~~a~t~tv~N~C~~tVWpg~~-----~~~~---------------~~~~g~~L~pG~s~s~~~-p~~WsGriWaR 67 (276)
.-...+++|+|.-.-+|.+|.. .+.. ..++..+.+||+++++.+ |-+=..+|+|-
T Consensus 46 gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~~gG~r~V~Gf 121 (158)
T PRK13198 46 NKPVTKVKVRNTGDRPIQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLIPFGGKQTLYGF 121 (158)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEEEccCceEEEcc
Confidence 3456899999999999999974 1211 245667889999999986 43334467663
No 24
>cd07557 trimeric_dUTPase Trimeric dUTP diphosphatases. Trimeric dUTP diphosphatases, or dUTPases, are the most common family of dUTPase, found in bacteria, eukaryotes, and archaea. They catalyze the hydrolysis of the dUTP-Mg complex (dUTP-Mg) into dUMP and pyrophosphate. This reaction is crucial for the preservation of chromosomal integrity as it removes dUTP and therefore reduces the cellular dUTP/dTTP ratio, and prevents dUTP from being incorporated into DNA. It also provides dUMP as the precursor for dTTP synthesis via the thymidylate synthase pathway. dUTPases are homotrimeric, except some monomeric viral dUTPases, which have been shown to mimic a trimer. Active sites are located at the subunit interface.
Probab=29.87 E-value=66 Score=24.26 Aligned_cols=28 Identities=29% Similarity=0.663 Sum_probs=21.4
Q ss_pred CeeecCCCeEE------EEcCCCCceeEeeeccc
Q 023852 43 GFPLKSGQSIV------FNAPVGWSGRIWGRSGC 70 (276)
Q Consensus 43 g~~L~pG~s~s------~~~p~~WsGriWaRTgC 70 (276)
.+.|.|+++.. +.+|.++.|.|++|.+-
T Consensus 13 ~~~i~P~~~~~v~t~~~i~~p~~~~~~i~~RSs~ 46 (92)
T cd07557 13 GIVLPPGETVLVPTGEAIELPEGYVGLVFPRSSL 46 (92)
T ss_pred CEEEcCCCEEEEEEeEEEEcCCCeEEEEEcCchh
Confidence 47888887654 44788999999999653
No 25
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=29.73 E-value=56 Score=23.96 Aligned_cols=23 Identities=39% Similarity=0.833 Sum_probs=17.8
Q ss_pred eeecCCCeEEEEcCCCC-----ceeEee
Q 023852 44 FPLKSGQSIVFNAPVGW-----SGRIWG 66 (276)
Q Consensus 44 ~~L~pG~s~s~~~p~~W-----sGriWa 66 (276)
|+|.||+..++....+. +|++|-
T Consensus 2 ~~L~~g~~~~lr~~~~~~l~v~~G~vWl 29 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQRLRVESGRVWL 29 (63)
T ss_pred EEeCCCceEEeEcCCCcEEEEccccEEE
Confidence 68889998888876653 488885
No 26
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=25.82 E-value=1.6e+02 Score=26.96 Aligned_cols=54 Identities=15% Similarity=0.219 Sum_probs=38.1
Q ss_pred ceeeeEEEEEeCCCCcccceee-----cCCC---------------CCCCCeeecCCCeEEEEc-CCCCceeEee
Q 023852 13 GESARVFTIVNDCKETIWPAIT-----PGEN---------------FNNGGFPLKSGQSIVFNA-PVGWSGRIWG 66 (276)
Q Consensus 13 ~~~a~t~tv~N~C~~tVWpg~~-----~~~~---------------~~~~g~~L~pG~s~s~~~-p~~WsGriWa 66 (276)
.-...+++|+|...-+|++|.. .++. ..|+..+.+||+++++++ |-+=..+|+|
T Consensus 127 gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV~~gG~r~v~G 201 (208)
T PRK13192 127 GRPAVTLDVTNTGDRPIQVGSHFHFFEVNRALRFDRAAAYGMRLDIPAGTAVRFEPGETKEVRLVPIGGARVVIG 201 (208)
T ss_pred CCCEEEEEEEeCCCCceeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEEEccCceEEEc
Confidence 3456899999999999999974 1211 245667889999999886 4333346665
No 27
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=25.25 E-value=1.6e+02 Score=25.16 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=20.1
Q ss_pred CeeecCCCeEEEEcCCCCceeEe
Q 023852 43 GFPLKSGQSIVFNAPVGWSGRIW 65 (276)
Q Consensus 43 g~~L~pG~s~s~~~p~~WsGriW 65 (276)
...|+||++.++.+++.=.|++|
T Consensus 93 s~~I~pGet~TitF~adKpG~Y~ 115 (135)
T TIGR03096 93 SEVIKAGETKTISFKADKAGAFT 115 (135)
T ss_pred ceEECCCCeEEEEEECCCCEEEE
Confidence 46799999999999888889987
No 28
>PF00947 Pico_P2A: Picornavirus core protein 2A; InterPro: IPR000081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This domain defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies 3CA and 3CB. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral 3C cysteine protease []. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0016032 viral reproduction; PDB: 2HRV_B 1Z8R_A.
Probab=25.22 E-value=28 Score=29.47 Aligned_cols=19 Identities=37% Similarity=0.907 Sum_probs=14.3
Q ss_pred CCcccccCCCCCccccCCC
Q 023852 76 GNGSCLTGACGTSLKCSAS 94 (276)
Q Consensus 76 g~~~C~TGdCgg~l~C~~~ 94 (276)
|.+.|+-|||||.|.|..+
T Consensus 83 g~Gp~~PGdCGg~L~C~HG 101 (127)
T PF00947_consen 83 GEGPAEPGDCGGILRCKHG 101 (127)
T ss_dssp EE-SSSTT-TCSEEEETTC
T ss_pred ecccCCCCCCCceeEeCCC
Confidence 5578999999999999753
No 29
>PRK13986 urease subunit alpha; Provisional
Probab=25.13 E-value=1.7e+02 Score=27.15 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=39.5
Q ss_pred ceeeeEEEEEeCCCCcccceee-----cCCC---------------CCCCCeeecCCCeEEEEc-CCCCceeEeee
Q 023852 13 GESARVFTIVNDCKETIWPAIT-----PGEN---------------FNNGGFPLKSGQSIVFNA-PVGWSGRIWGR 67 (276)
Q Consensus 13 ~~~a~t~tv~N~C~~tVWpg~~-----~~~~---------------~~~~g~~L~pG~s~s~~~-p~~WsGriWaR 67 (276)
.-...+++|+|.-.-+|.+|.. .+.. ..++..+.+||+++++++ |-+=..+|+|-
T Consensus 123 gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV~~gG~r~v~G~ 198 (225)
T PRK13986 123 GKKAVSVKVKNVGDRPVQVGSHFHFFEVNRCLEFDREKAFGKRLDIASGTAVRFEPGEEKSVELIDIGGNRRIFGF 198 (225)
T ss_pred CCcEEEEEEEeCCCCceeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEEEccCceEEecC
Confidence 3456899999999999999974 1211 245667889999999986 43334567764
No 30
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=22.90 E-value=27 Score=30.18 Aligned_cols=10 Identities=50% Similarity=0.949 Sum_probs=7.8
Q ss_pred ccCccCCCce
Q 023852 116 LVDGFNLPMS 125 (276)
Q Consensus 116 lVdGfNlP~~ 125 (276)
+||||||=-.
T Consensus 2 lIDGYNli~~ 11 (166)
T PF05991_consen 2 LIDGYNLIHA 11 (166)
T ss_pred eEcchhhhCC
Confidence 6899998554
No 31
>PF06282 DUF1036: Protein of unknown function (DUF1036); InterPro: IPR009380 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.79 E-value=1.4e+02 Score=24.37 Aligned_cols=38 Identities=16% Similarity=0.285 Sum_probs=27.0
Q ss_pred eEEEEEeCCCCcccceeec--CCCCCCCC-eeecCCCeEEE
Q 023852 17 RVFTIVNDCKETIWPAITP--GENFNNGG-FPLKSGQSIVF 54 (276)
Q Consensus 17 ~t~tv~N~C~~tVWpg~~~--~~~~~~~g-~~L~pG~s~s~ 54 (276)
.-|+|-|+-++.|++++-- +......| +.|+||+-.++
T Consensus 4 a~~~vCN~T~~~v~vAigy~~~~~W~seGWw~i~pg~C~~v 44 (115)
T PF06282_consen 4 AGLRVCNRTSSPVGVAIGYRDGGGWVSEGWWRIDPGECATV 44 (115)
T ss_pred CCcEEecCCCCeEEEEEEEEcCCCcEEeeeEEeCCCceEEe
Confidence 4589999999999999852 12222334 58889887665
No 32
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=20.56 E-value=1.7e+02 Score=21.49 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=10.3
Q ss_pred ceeeeEEEEEeCCCCcc
Q 023852 13 GESARVFTIVNDCKETI 29 (276)
Q Consensus 13 ~~~a~t~tv~N~C~~tV 29 (276)
.....+++|+|+...++
T Consensus 5 ~~~~~~~tv~N~g~~~~ 21 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPL 21 (78)
T ss_dssp EEEEEEEEEE--SSS-B
T ss_pred CEEEEEEEEEECCCCce
Confidence 34567899999997765
No 33
>cd05468 pVHL von Hippel-Landau (pVHL) tumor suppressor protein. von Hippel-Landau (pVHL) protein, the gene product of VHL, is a critical regulator of the ubiquitous oxygen-sensing pathway. It is conserved throughout evolution, as its homologs are found in organisms ranging from mammals to the Drosophila melanogaster, Anopheles gambiae insects and the Caenorhabditis elegans nematode. pVHL acts as the substrate recognition component of an E3 ubiquitin ligase complex. Several proteins have been identified as pVHL-binding proteins that are subject to ubiquitin-mediated proteolysis; the best characterized putative substrates are the alpha subunits of the hypoxia-inducible factor (HIF1alpha, HIF2alpha, and HIF3alpha). In addition to HIF degradation, pVHL has been implicated to be involved in HIF independent cellular processes. Germline VHL mutations cause renal cell carcinomas, hemangioblastomas and pheochromocytomas in humans. pVHL can bind to and direct the proper deposition of fibronecti
Probab=20.28 E-value=1.5e+02 Score=25.08 Aligned_cols=50 Identities=14% Similarity=0.094 Sum_probs=32.4
Q ss_pred eeeEEEEEeCCCCcccceeecCCCCCCCCeeecCCCeEEEEcCCCCceeEeee
Q 023852 15 SARVFTIVNDCKETIWPAITPGENFNNGGFPLKSGQSIVFNAPVGWSGRIWGR 67 (276)
Q Consensus 15 ~a~t~tv~N~C~~tVWpg~~~~~~~~~~g~~L~pG~s~s~~~p~~WsGriWaR 67 (276)
....++|+|+.+.+|-+-+....+-.-.=..|+||+...++ .+.|..|=-
T Consensus 7 ~~~~v~F~N~t~~~v~~~Wid~~G~~~~Y~~l~pg~~~~~~---Ty~~H~W~~ 56 (141)
T cd05468 7 VPSTVRFVNRTDRPVELYWIDYDGKPVSYGTLQPGETVRQN---TYVGHPWLF 56 (141)
T ss_pred ceEEEEEEeCCCCeEEEEEECCCCCEEEeeeeCCCCEEeec---ccCCCcEEE
Confidence 34789999999999987776321000001379999987653 456666643
Done!