BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023853
(276 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SEV|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
Length = 362
Score = 481 bits (1239), Expect = e-136, Method: Compositional matrix adjust.
Identities = 235/259 (90%), Positives = 245/259 (94%)
Query: 17 VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 76
VRGFLGQQQLE ALTGMD++I+PAGVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AI
Sbjct: 97 VRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAI 156
Query: 77 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV 136
VNLISNPVNSTVPIAAEVFKK GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPV
Sbjct: 157 VNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 216
Query: 137 VGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAA 196
VGGHAGVTILPLLSQVKP S T EI YLTDRIQNGGTEVVEAK GAGSATLSMAYAA
Sbjct: 217 VGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAV 276
Query: 197 KFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 256
KFADACLRGLRGDAGVIECA+V+S VTELPFFASKVRLGR GIEE+YSLGPLNEYER GL
Sbjct: 277 KFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGL 336
Query: 257 EKAKKELAGSIQKGVSFVR 275
EKAKKELAGSI+KGVSF+R
Sbjct: 337 EKAKKELAGSIEKGVSFIR 355
>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|C Chain C, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|D Chain D, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|E Chain E, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|F Chain F, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|G Chain G, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|H Chain H, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
Length = 326
Score = 481 bits (1238), Expect = e-136, Method: Compositional matrix adjust.
Identities = 235/259 (90%), Positives = 245/259 (94%)
Query: 17 VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 76
VRGFLGQQQLE ALTGMD++I+PAGVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AI
Sbjct: 61 VRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAI 120
Query: 77 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV 136
VNLISNPVNSTVPIAAEVFKK GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPV
Sbjct: 121 VNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 180
Query: 137 VGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAA 196
VGGHAGVTILPLLSQVKP S T EI YLTDRIQNGGTEVVEAK GAGSATLSMAYAA
Sbjct: 181 VGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAV 240
Query: 197 KFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 256
KFADACLRGLRGDAGVIECA+V+S VTELPFFASKVRLGR GIEE+YSLGPLNEYER GL
Sbjct: 241 KFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGL 300
Query: 257 EKAKKELAGSIQKGVSFVR 275
EKAKKELAGSI+KGVSF+R
Sbjct: 301 EKAKKELAGSIEKGVSFIR 319
>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|B Chain B, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|C Chain C, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|D Chain D, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
Length = 314
Score = 297 bits (760), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 146/272 (53%), Positives = 194/272 (71%), Gaps = 1/272 (0%)
Query: 5 LAQNKFDVDSRA-VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKT 63
+A + +++RA V+G+LG +QL D L G D+V+IPAGVPRKPGMTRDDLFN NA IV T
Sbjct: 40 VAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVAT 99
Query: 64 LCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAE 123
L A+ CP A++ +ISNPVNST+PI AEVFKK G Y+P ++ GVT LD+VRAN FVAE
Sbjct: 100 LTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAE 159
Query: 124 VLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 183
+ GLDP V VPV+GGHAG TI+PL+SQ P ++ LT RIQ GTEVV+AK G
Sbjct: 160 LKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAG 219
Query: 184 AGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIY 243
AGSATLSMAYA A+F + + + G GV+EC++V S T+ P+F++ + LG+ GIE+
Sbjct: 220 AGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNL 279
Query: 244 SLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 275
+G ++ +E + +A EL SI+KG FV+
Sbjct: 280 GIGKISPFEEKMIAEAIPELKASIKKGEEFVK 311
>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|B Chain B, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|C Chain C, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|D Chain D, Crystal Structure Of Human Malate Dehydrogenase Type 2
Length = 342
Score = 296 bits (759), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 144/260 (55%), Positives = 188/260 (72%)
Query: 16 AVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 75
AV+G+LG +QL D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL A+ CP+A
Sbjct: 80 AVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEA 139
Query: 76 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP 135
++ +I+NPVNST+PI AEVFKK G Y+P ++ GVT LD+VRANTFVAE+ GLDP V+VP
Sbjct: 140 MICVIANPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVP 199
Query: 136 VVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAA 195
V+GGHAG TI+PL+SQ P ++ LT RIQ GTEVV+AK GAGSATLSMAYA
Sbjct: 200 VIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAYAG 259
Query: 196 AKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAG 255
A+F + + + G GV+EC++V S TE +F++ + LG+ GIE+ +G ++ +E
Sbjct: 260 ARFVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLLGKKGIEKNLGIGKVSSFEEKM 319
Query: 256 LEKAKKELAGSIQKGVSFVR 275
+ A EL SI+KG FV+
Sbjct: 320 ISDAIPELKASIKKGEDFVK 339
>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|C Chain C, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|E Chain E, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|G Chain G, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|3HHP|A Chain A, Malate Dehydrogenase Open Conformation
pdb|3HHP|B Chain B, Malate Dehydrogenase Open Conformation
pdb|3HHP|C Chain C, Malate Dehydrogenase Open Conformation
pdb|3HHP|D Chain D, Malate Dehydrogenase Open Conformation
Length = 312
Score = 279 bits (713), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 145/260 (55%), Positives = 180/260 (69%), Gaps = 2/260 (0%)
Query: 17 VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 76
++GF G+ AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA
Sbjct: 55 IKGFSGEDA-TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKAC 113
Query: 77 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV 136
+ +I+NPVN+TV IAAEV KK G YD +L GVT LD++R+NTFVAE+ G P EV+VPV
Sbjct: 114 IGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPV 173
Query: 137 VGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAA 196
+GGH+GVTILPLLSQV P S T E+ LT RIQN GTEVVEAK G GSATLSM AAA
Sbjct: 174 IGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAA 232
Query: 197 KFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 256
+F + +R L+G+ GV+ECAYV FF+ + LG+ G+EE S+G L+ +E+ L
Sbjct: 233 RFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNAL 292
Query: 257 EKAKKELAGSIQKGVSFVRK 276
E L I G FV K
Sbjct: 293 EGMLDTLKKDIALGEEFVNK 312
>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli
Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms
Resolution
pdb|2CMD|A Chain A, The Crystal Structure Of E.Coli Malate Dehydrogenase: A
Complex Of The Apoenzyme And Citrate At 1.87 Angstroms
Resolution
Length = 312
Score = 278 bits (711), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 145/260 (55%), Positives = 180/260 (69%), Gaps = 2/260 (0%)
Query: 17 VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 76
++GF G+ AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA
Sbjct: 55 IKGFSGEDA-TPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKAC 113
Query: 77 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV 136
+ +I+NPVN+TV IAAEV KK G YD +L GVT LD++R+NTFVAE+ G P EV+VPV
Sbjct: 114 IGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPV 173
Query: 137 VGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAA 196
+GGH+GVTILPLLSQV P S T E+ LT RIQN GTEVVEAK G GSATLSM AAA
Sbjct: 174 IGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAA 232
Query: 197 KFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 256
+F + +R L+G+ GV+ECAYV FF+ + LG+ G+EE S+G L+ +E+ L
Sbjct: 233 RFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNAL 292
Query: 257 EKAKKELAGSIQKGVSFVRK 276
E L I G FV K
Sbjct: 293 EGMLDTLKKDIALGQEFVNK 312
>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
Length = 312
Score = 275 bits (702), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 144/260 (55%), Positives = 179/260 (68%), Gaps = 2/260 (0%)
Query: 17 VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 76
++GF G+ AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA
Sbjct: 55 IKGFSGEDA-TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKAC 113
Query: 77 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV 136
+ +I+NPVN+TV IAAEV KK G YD +L GVT LD++ +NTFVAE+ G P EV+VPV
Sbjct: 114 IGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIICSNTFVAELKGKQPGEVEVPV 173
Query: 137 VGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAA 196
+GGH+GVTILPLLSQV P S T E+ LT RIQN GTEVVEAK G GSATLSM AAA
Sbjct: 174 IGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAA 232
Query: 197 KFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 256
+F + +R L+G+ GV+ECAYV FF+ + LG+ G+EE S+G L+ +E+ L
Sbjct: 233 RFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNAL 292
Query: 257 EKAKKELAGSIQKGVSFVRK 276
E L I G FV K
Sbjct: 293 EGMLDTLKKDIALGQEFVNK 312
>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|B Chain B, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|C Chain C, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|D Chain D, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
Length = 313
Score = 268 bits (685), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 143/260 (55%), Positives = 180/260 (69%), Gaps = 3/260 (1%)
Query: 16 AVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 75
+++G+ G+ AL G D+V+I AGV RKPG R DLFN+NAGIVK+L E IA CP A
Sbjct: 57 SIKGYAGEDPTP-ALEGADVVLISAGVARKPGXDRADLFNVNAGIVKSLAERIAVVCPNA 115
Query: 76 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP 135
+ +I+NPVN+TVPIAAEV KK G YD ++L GVT LDV+R+ TFVAE+ G DP EV VP
Sbjct: 116 CIGIITNPVNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETFVAELKGQDPGEVRVP 175
Query: 136 VVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAA 195
V+GGH+GVTILPLLSQV+ + EI LT RIQN GTEVVEAK G GSATLS AA
Sbjct: 176 VIGGHSGVTILPLLSQVE-GVEFSDEEIAALTKRIQNAGTEVVEAKAGGGSATLSXGQAA 234
Query: 196 AKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAG 255
+F A ++ L+G+ VIE AYV FFA V+LG+ G+EEI G L+++E+A
Sbjct: 235 CRFGLALVKALQGEE-VIEYAYVEGNGEHASFFAQPVKLGKEGVEEILPYGELSDFEKAA 293
Query: 256 LEKAKKELAGSIQKGVSFVR 275
L+ + L IQ GV FV+
Sbjct: 294 LDGXLETLNSDIQIGVDFVK 313
>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 131/245 (53%), Gaps = 36/245 (14%)
Query: 34 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 93
DIVII AG+PRKPGMTR+DL NAGIVK + + I K I+ ++SNP++ +A
Sbjct: 71 DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA-- 128
Query: 94 VFKKVGTYDPK-RLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ 151
+ + G PK R++G+ +LD R +F+A LG+ ++++ V+GGH G ++P++
Sbjct: 129 -WVRSGL--PKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGH-GDAMVPVVKY 184
Query: 152 VK----PSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA----- 201
P L P E ID L +R +NGG E+VE GSA + A + + ++
Sbjct: 185 TTVAGIPISDLLPAETIDKLVERTRNGGAEIVE-HLKQGSAFYAPASSVVEMVESIVLDR 243
Query: 202 -----CLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 256
C GL G G+ + F V+LGR G+E+IY + L++ + L
Sbjct: 244 KRVLPCAVGLEGQYGI-----------DKTFVGVPVKLGRNGVEQIYEIN-LDQADLDLL 291
Query: 257 EKAKK 261
+K+ K
Sbjct: 292 QKSAK 296
>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 131/245 (53%), Gaps = 36/245 (14%)
Query: 34 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 93
DIVII AG+PRKPGMTR+DL NAGIVK + + I K I+ ++SNP++ +A
Sbjct: 71 DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA-- 128
Query: 94 VFKKVGTYDPK-RLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ 151
+ + G PK R++G+ +LD R +F+A LG+ ++++ V+GGH G ++P++
Sbjct: 129 -WVRSGL--PKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGH-GDAMVPVVKY 184
Query: 152 VK----PSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA----- 201
P L P E ID L +R +NGG E+VE GSA + A + + ++
Sbjct: 185 TTVAGIPISDLLPAETIDKLVERTRNGGAEIVE-HLKQGSAFYAPASSVVEMVESIVLDR 243
Query: 202 -----CLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 256
C GL G G+ + F V+LGR G+E+IY + L++ + L
Sbjct: 244 KRVLPCAVGLEGQYGI-----------DKTFVGVPVKLGRNGVEQIYEIN-LDQADLDLL 291
Query: 257 EKAKK 261
+K+ K
Sbjct: 292 QKSAK 296
>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate
Dehydrogenase In Closed Conformation
Length = 315
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 130/235 (55%), Gaps = 20/235 (8%)
Query: 34 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 93
D+V+I AG+ RKPGM+RDDL N+ I+K++ IAK P AI+ +++NPV++ +
Sbjct: 80 DVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVDA---MTYS 136
Query: 94 VFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 152
VFK+ G + +R++G + +LD R TF+A+ L L +++ V+GGH G ++PL+
Sbjct: 137 VFKEAG-FPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVLGGH-GDDMVPLVRYS 194
Query: 153 K----PSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLR 207
P +L P E ++ + +R + GG E+V G GSA + A + + +A L+ R
Sbjct: 195 YAGGIPLETLIPKERLEAIVERTRKGGGEIV-GLLGNGSAYYAPAASLVEMTEAILKDQR 253
Query: 208 G---DAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKA 259
+E Y S + + V LG GIE+I L L + E+ L+++
Sbjct: 254 RVLPAIAYLEGEYGYSDL----YLGVPVILGGNGIEKIIELELLAD-EKEALDRS 303
>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|B Chain B, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|C Chain C, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|D Chain D, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
Length = 321
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 126/259 (48%), Gaps = 37/259 (14%)
Query: 17 VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 76
VRG + LE++ D+VI+ AGVPRKPG +RDDL IN + +T+ EGI CP A
Sbjct: 62 VRGTNDYKDLENS----DVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGIKHNCPNAF 117
Query: 77 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVP 135
V I+NP++ I +K +++G +LD R TF+A+ L + ++V
Sbjct: 118 VICITNPLD----IXVNXLQKFSGVPDNKIVGXAGVLDSARFRTFLADELNVSVQQVQAY 173
Query: 136 VVGGHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAG 185
V GGH G T +PL L Q+ L +D + R ++GG E+V A G
Sbjct: 174 VXGGH-GDTXVPLTKXSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIV-ALLKTG 231
Query: 186 SATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSL 245
SA + A A + A++ L+ + ++ C A+KV+ G G++E +
Sbjct: 232 SAYYAPAAAGIQXAESFLKDKK---XILPC-------------AAKVKAGXYGLDEDLFV 275
Query: 246 GPLNEYERAGLEKAKKELA 264
G E G+ + E++
Sbjct: 276 GVPTEISANGVRPIEVEIS 294
>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV0|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 126/245 (51%), Gaps = 36/245 (14%)
Query: 34 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 93
DIV+I AG+PRKPGMTR+DL ++NAGIV+ + I + I+ ++SNP++ +A
Sbjct: 71 DIVVITAGLPRKPGMTREDLLSMNAGIVREVTGRIMEHSKNPIIVVVSNPLDIMTHVA-- 128
Query: 94 VFKKVGTYDPK-RLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ 151
++K G PK R++G+ +LD R +F+A LG+ ++V V+GGH G ++P++
Sbjct: 129 -WQKSGL--PKERVIGMAGVLDSARFRSFIAMELGVSMQDVTACVLGGH-GDAMVPVVKY 184
Query: 152 VK----PSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA----- 201
P L E I L +R + GG E+V GSA S A + + ++
Sbjct: 185 TTVAGIPVADLISAERIAELVERTRTGGAEIVN-HLKQGSAFYSPATSVVEMVESIVLDR 243
Query: 202 -----CLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 256
C L G G+ + F V+LG+ G+E IY + L++ + L
Sbjct: 244 KRVLTCAVSLDGQYGI-----------DGTFVGVPVKLGKNGVEHIYEI-KLDQSDLDLL 291
Query: 257 EKAKK 261
+K+ K
Sbjct: 292 QKSAK 296
>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXI|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXJ|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXJ|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 94.0 bits (232), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 131/243 (53%), Gaps = 20/243 (8%)
Query: 34 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 93
D++++ +G PRKPGM+R+DL +NA I + A P A++ +++NP+++ +AAE
Sbjct: 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 94 VFKKVGTYDPKRLLG-VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 148
V + +R++G +LD R TF+A G+ ++V ++GGH G ++PL
Sbjct: 132 ----VSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVKDVQAMLMGGH-GDEMVPLPRFS 186
Query: 149 -LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGAGSATLSMAYAAAKFADACLRGL 206
+S + S + P + + +R + GG E+V KT GSA + A A A+ +A L+
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKT--GSAYYAPAAATAQMVEAVLKDK 244
Query: 207 RGDAGVIECAYVAST--VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 264
+ V AY+ + ++ +F V LG G+E+I L PLNE E A L + K +
Sbjct: 245 KRVMPV--AAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVR 300
Query: 265 GSI 267
++
Sbjct: 301 ATL 303
>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXH|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXK|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXK|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 131/243 (53%), Gaps = 20/243 (8%)
Query: 34 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 93
D++++ +G PRKPGM+R+DL +NA I + A P A++ +++NP+++ +AAE
Sbjct: 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 94 VFKKVGTYDPKRLLG-VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 148
V + +R++G +LD R TF+A G+ ++V ++GGH G ++PL
Sbjct: 132 ----VSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVQDVQAMLMGGH-GDEMVPLPRFS 186
Query: 149 -LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGAGSATLSMAYAAAKFADACLRGL 206
+S + S + P + + +R + GG E+V KT GSA + A A A+ +A L+
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKT--GSAYYAPAAATAQMVEAVLKDK 244
Query: 207 RGDAGVIECAYVAST--VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 264
+ V AY+ + ++ +F V LG G+E+I L PLNE E A L + K +
Sbjct: 245 KRVMPV--AAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVR 300
Query: 265 GSI 267
++
Sbjct: 301 ATL 303
>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUY|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1UXG|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface.
pdb|1UXG|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
Length = 309
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 130/243 (53%), Gaps = 20/243 (8%)
Query: 34 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 93
D++++ +G PRKPGM+R+DL +NA I + A P A++ +++NP+++ +AAE
Sbjct: 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 94 VFKKVGTYDPKRLLG-VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 148
V + +R++G +LD R TF+A G+ +V ++GGH G ++PL
Sbjct: 132 ----VSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGH-GDEMVPLPRFS 186
Query: 149 -LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGAGSATLSMAYAAAKFADACLRGL 206
+S + S + P + + +R + GG E+V KT GSA + A A A+ +A L+
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKT--GSAYYAPAAATAQMVEAVLKDK 244
Query: 207 RGDAGVIECAYVAST--VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 264
+ V AY+ + ++ +F V LG G+E+I L PLNE E A L + K +
Sbjct: 245 KRVMPV--AAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVR 300
Query: 265 GSI 267
++
Sbjct: 301 ATL 303
>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
pdb|1UR5|C Chain C, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
Length = 309
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 130/243 (53%), Gaps = 20/243 (8%)
Query: 34 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 93
D++++ +G PRKPGM+R+DL +NA I + A P A++ +++NP+++ +AAE
Sbjct: 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 94 VFKKVGTYDPKRLLG-VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 148
V + +R++G +LD R TF+A G+ +V ++GGH G ++PL
Sbjct: 132 ----VSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGH-GDEMVPLPRFS 186
Query: 149 -LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGAGSATLSMAYAAAKFADACLRGL 206
+S + S + P + + +R + GG E+V KT GSA + A A A+ +A L+
Sbjct: 187 CISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKT--GSAYYAPAAATAQMVEAVLKDK 244
Query: 207 RGDAGVIECAYVAST--VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 264
+ V AY+ + ++ +F V LG G+E+I L PLNE E A L + K +
Sbjct: 245 KRVMPV--AAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVR 300
Query: 265 GSI 267
++
Sbjct: 301 ATL 303
>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|B Chain B, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|C Chain C, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|D Chain D, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|E Chain E, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|F Chain F, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|G Chain G, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|H Chain H, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|I Chain I, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|J Chain J, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|K Chain K, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|L Chain L, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
Length = 328
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 128/263 (48%), Gaps = 28/263 (10%)
Query: 21 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 80
G+ E L D+VII AGVPRKP MTR DL +NA IV ++ E + K CP A V I
Sbjct: 72 FGENNYE-YLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICI 130
Query: 81 SNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGG 139
+NP+++ V FK+ ++ G++ +LD R ++ LG+ P +V VVGG
Sbjct: 131 TNPLDAMV----YYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVGG 186
Query: 140 HAGVTILPLLSQVK----------PSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGAGSAT 188
H G ++PL S V +T ++I+ + + GG E+VE KTG+
Sbjct: 187 H-GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELLKTGS---- 241
Query: 189 LSMAYAAAKFADACLRGLRGDAGVIECAYVAS---TVTELPFFASKVRLGRAGIEEIYSL 245
+ AA L+ V+ C+ + V L F V +G+ GIE++ +
Sbjct: 242 -AFYAPAASAVAMAQAYLKDSKSVLVCSTYLTGQYNVNNL-FVGVPVVIGKNGIEDVVIV 299
Query: 246 GPLNEYERAGLEKAKKELAGSIQ 268
L++ E++ K+ + + +Q
Sbjct: 300 N-LSDDEKSLFSKSVESIQNLVQ 321
>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVI|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|E Chain E, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|F Chain F, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
Length = 324
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 126/257 (49%), Gaps = 37/257 (14%)
Query: 29 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV 88
A+ G D+VI+ AGVPRKPGM+RDDL IN +++ + GI K P+A V I+NP+++ V
Sbjct: 72 AIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLDAMV 131
Query: 89 PIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI--- 145
A + F + + + GV LD R F++E + +V V V+GGH +
Sbjct: 132 -WALQKFSGLPAHKVVGMAGV--LDSARFRYFLSEEFNVSVEDVTVFVLGGHGDSMVPLA 188
Query: 146 -------LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKF 198
+PL VK + + ++D + R ++GG E+V GSA + A +A +
Sbjct: 189 RYSTVAGIPLPDLVKMGWT-SQDKLDKIIQRTRDGGAEIV-GLLKTGSAFYAPAASAIQM 246
Query: 199 ADACLRG----------LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPL 248
A++ L+ L G GV + TV +G G+E I + L
Sbjct: 247 AESYLKDKKRVLPVAAQLSGQYGVKDMYVGVPTV-----------IGANGVERIIEI-DL 294
Query: 249 NEYERAGLEKAKKELAG 265
++ E+A +K+ +AG
Sbjct: 295 DKDEKAQFDKSVASVAG 311
>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh)
Length = 319
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 16/176 (9%)
Query: 30 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 89
L G D+VI+ AGVP+KPG TR L NA ++K + ++K P +IV +++NPV+
Sbjct: 65 LKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD---- 120
Query: 90 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH-------- 140
+ F K DP+++ G T+LD R T +A+ G PR V V V+G H
Sbjct: 121 VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVW 180
Query: 141 AGVTI--LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYA 194
+G I +PL + + ++ ++ + E++E K GA +++A A
Sbjct: 181 SGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERK-GATHYAIALAVA 235
>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxq
pdb|3CZM|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxq
Length = 326
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 114/243 (46%), Gaps = 27/243 (11%)
Query: 28 DALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 82
+ + G D+VII AG+ + PG +R+DL NA I++ + +G+ K CP A V +++N
Sbjct: 72 EKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFVIVVTN 131
Query: 83 PVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHA 141
P++ V + F + + G+ +LD R F+A+ L + PR++ V+G H
Sbjct: 132 PLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATVIGTH- 186
Query: 142 GVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 191
G +LPL L + +T ++ + +R + G E+V G GSA +
Sbjct: 187 GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGSAYYAP 245
Query: 192 AYAAAKFADACLRGLRGDAGVIECAYVASTVTELP--FFASKVRLGRAGIEEIYSLGPLN 249
A +A A A L+ + V+ C+ L F +G GIE++ L +
Sbjct: 246 ALSAITMAQAF---LKDEKRVLPCSVYCQGEYGLHDMFIGLPAVIGGGGIEQVIELELTH 302
Query: 250 EYE 252
E +
Sbjct: 303 EEQ 305
>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form
pdb|1SOV|B Chain B, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form
pdb|1SOW|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxalate
pdb|1SOW|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxalate
Length = 328
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 114/243 (46%), Gaps = 27/243 (11%)
Query: 28 DALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 82
+ + G D+VII AG+ + PG +R+DL NA I++ + +G+ K CP A V +++N
Sbjct: 72 EKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFVIVVTN 131
Query: 83 PVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHA 141
P++ V + F + + G+ +LD R F+A+ L + PR++ V+G H
Sbjct: 132 PLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATVIGTH- 186
Query: 142 GVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 191
G +LPL L + +T ++ + +R + G E+V G GSA +
Sbjct: 187 GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGSAYYAP 245
Query: 192 AYAAAKFADACLRGLRGDAGVIECAYVASTVTELP--FFASKVRLGRAGIEEIYSLGPLN 249
A +A A A L+ + V+ C+ L F +G GIE++ L +
Sbjct: 246 ALSAITMAQAF---LKDEKRVLPCSVYCQGEYGLHDMFIGLPAVIGGGGIEQVIELELTH 302
Query: 250 EYE 252
E +
Sbjct: 303 EEQ 305
>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T25|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 3- Hydroxyisoxazole-4-Carboxylic Acid
pdb|1T26|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 4- Hydroxy-1,2,5-Thiadiazole-3-Carboxylic Acid
pdb|1T2C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh
pdb|1T2D|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And Oxalate
pdb|2X8L|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Apo Structure
pdb|4B7U|A Chain A, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|B Chain B, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|C Chain C, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|D Chain D, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
Length = 322
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 120/254 (47%), Gaps = 32/254 (12%)
Query: 28 DALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 82
D L G D+VI+ AG + PG RDDL +N I+ + I K CP A + +++N
Sbjct: 68 DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTN 127
Query: 83 PVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHA 141
PV+ V ++ + +++G+ +LD R ++++ L + PR+V+ +VG H
Sbjct: 128 PVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHG 183
Query: 142 GVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 191
+L PL + ++ E++ + DR N E+V S ++
Sbjct: 184 NKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLH---ASPYVAP 239
Query: 192 AYAAAKFADACLRGLRGD---AGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPL 248
A A + A++ L+ L+ + ++E Y S + F + V LG G+E++ L L
Sbjct: 240 AAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGANGVEQVIEL-QL 294
Query: 249 NEYERAGLEKAKKE 262
N E+A ++A E
Sbjct: 295 NSEEKAKFDEAIAE 308
>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|B Chain B, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|C Chain C, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|D Chain D, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
Length = 308
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 118/252 (46%), Gaps = 32/252 (12%)
Query: 22 GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 81
G ED + G DIV++ AG+ RKPGMTR+ L NA + L E I AIV + +
Sbjct: 58 GSNSYED-MRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITT 116
Query: 82 NPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGH 140
NPV++ + ++KK G + +R++G + +LD R ++++ LG+ + V+ V+G H
Sbjct: 117 NPVDAMTYV---MYKKTG-FPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMH 172
Query: 141 AGVTI-LPLLSQVKP---SCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAA 196
+P LS V ++ EI+ + N G ++ E + S Y A
Sbjct: 173 GQKMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELR------GYSSNYGPA 226
Query: 197 KFADACLRGLRGDAGVI---------ECAYVASTVTELPFFASKVRLGRAGIEEIYSLGP 247
+ ++ D+ I E Y V E+P +G++GIE I L P
Sbjct: 227 AGLVLTVEAIKRDSKRIYPYSLYLQGEYGY-NDIVAEVPAV-----IGKSGIERIIEL-P 279
Query: 248 LNEYERAGLEKA 259
L E E+ ++A
Sbjct: 280 LTEDEKRKFDEA 291
>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedicarboxylic Acid
pdb|1U4S|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedisulphonic Acid
pdb|1U5A|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,5- Dihydroxy-2-Naphthoic Acid
pdb|1U5C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,7- Dihydroxynaphthalene-2-Carboxylic Acid And Nad+
pdb|2A94|A Chain A, Structure Of Plasmodium Falciparum Lactate Dehydrogenase
Complexed To Apadh
Length = 321
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 120/254 (47%), Gaps = 32/254 (12%)
Query: 28 DALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 82
D L G D+VI+ AG + PG RDDL +N I+ + I K CP A + +++N
Sbjct: 67 DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTN 126
Query: 83 PVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHA 141
PV+ V ++ + +++G+ +LD R ++++ L + PR+V+ +VG H
Sbjct: 127 PVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHG 182
Query: 142 GVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 191
+L PL + ++ E++ + DR N E+V S ++
Sbjct: 183 NKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLH---ASPYVAP 238
Query: 192 AYAAAKFADACLRGLRGD---AGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPL 248
A A + A++ L+ L+ + ++E Y S + F + V LG G+E++ L L
Sbjct: 239 AAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGANGVEQVIEL-QL 293
Query: 249 NEYERAGLEKAKKE 262
N E+A ++A E
Sbjct: 294 NSEEKAKFDEAIAE 307
>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase
Length = 316
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 120/254 (47%), Gaps = 32/254 (12%)
Query: 28 DALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 82
D L G D+VI+ AG + PG RDDL +N I+ + I K CP A + +++N
Sbjct: 68 DDLAGSDVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTN 127
Query: 83 PVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHA 141
PV+ V ++ + +++G+ +LD R ++++ L + PR+V+ +VG H
Sbjct: 128 PVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHG 183
Query: 142 GVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 191
+L PL + ++ E++ + DR N E+V S ++
Sbjct: 184 NKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLH---ASPYVAP 239
Query: 192 AYAAAKFADACLRGLRGD---AGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPL 248
A A + A++ L+ L+ + ++E Y S + F + V LG G+E++ L L
Sbjct: 240 AAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGANGVEQVIEL-QL 294
Query: 249 NEYERAGLEKAKKE 262
N E+A ++A E
Sbjct: 295 NSEEKAKFDEAIAE 308
>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2-({4-
Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane-
1,1,2-Triol
Length = 323
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 120/254 (47%), Gaps = 32/254 (12%)
Query: 28 DALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 82
D L G D+VI+ AG + PG RDDL +N I+ + I K CP A + +++N
Sbjct: 67 DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTN 126
Query: 83 PVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHA 141
PV+ V ++ + +++G+ +LD R ++++ L + PR+V+ +VG H
Sbjct: 127 PVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHG 182
Query: 142 GVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 191
+L PL + ++ E++ + DR N E+V S ++
Sbjct: 183 NKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLH---ASPYVAP 238
Query: 192 AYAAAKFADACLRGLRGD---AGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPL 248
A A + A++ L+ L+ + ++E Y S + F + V LG G+E++ L L
Sbjct: 239 AAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGANGVEQVIEL-QL 293
Query: 249 NEYERAGLEKAKKE 262
N E+A ++A E
Sbjct: 294 NSEEKAKFDEAIAE 307
>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From
Salinibacter Ruber
Length = 314
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 119/252 (47%), Gaps = 25/252 (9%)
Query: 34 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 93
D+ II AG+PR PGM+RDDL N IV + E + P + + +++NP++ +A E
Sbjct: 71 DVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTYVAYE 130
Query: 94 VFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 152
+ R++G+ +LD R +F+AE L + R+V ++GGH G T++PL
Sbjct: 131 ----ASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGGH-GDTMVPLPRYT 185
Query: 153 KPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRG------L 206
P ID RI+ E+VE GAG + + +A +A L
Sbjct: 186 TVGGIPVPQLIDDA--RIE----EIVERTKGAGGEIVDLMGTSAWYAPGAAAAEMTEAIL 239
Query: 207 RGDAGVIECAYVASTVTELP--FFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 264
+ + ++ CA L F V+LG G+EE+ + L+ E+A L K A
Sbjct: 240 KDNKRILPCAAYCDGEYGLDDLFIGVPVKLGAGGVEEVIEV-DLDADEKAQL----KTSA 294
Query: 265 GSIQKGVSFVRK 276
G + + +++
Sbjct: 295 GHVHSNLDDLQR 306
>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2AA3|A Chain A, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|B Chain B, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|C Chain C, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|D Chain D, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
Length = 321
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 123/255 (48%), Gaps = 34/255 (13%)
Query: 28 DALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 82
D L G D+VI+ AG + PG RDDL +N I+ + I CP A + +++N
Sbjct: 67 DDLKGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNLCPNAFIIVVTN 126
Query: 83 PVNSTVPIAAEVFKKVGTYDPK-RLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH 140
PV+ V + +F+ G PK +++G+ +LD R ++++ L + PR+V+ +VG H
Sbjct: 127 PVDVMVQL---LFEHSGV--PKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNALIVGAH 181
Query: 141 AGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLS 190
+L PL + + +T E++ + DR N E+V S ++
Sbjct: 182 GNKMVLLKRYITVGGIPLQEFIN-NKKITDEEVEGIFDRTVNTALEIVNL---LASPYVA 237
Query: 191 MAYAAAKFADACLRGLRGD---AGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGP 247
A A + A++ L+ ++ + ++E Y S + F + + +G G+E++ L
Sbjct: 238 PAAAIIEMAESYLKDIKKVLVCSTLLEGQYGHSNI----FGGTPLVIGGTGVEQVIEL-Q 292
Query: 248 LNEYERAGLEKAKKE 262
LN E+ ++A E
Sbjct: 293 LNAEEKTKFDEAVAE 307
>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase.
pdb|1LDG|A Chain A, Plasmodium Falciparum L-lactate Dehydrogenase Complexed
With Nadh And Oxamate
Length = 316
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 119/254 (46%), Gaps = 32/254 (12%)
Query: 28 DALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 82
D L G D+VI+ AG + PG R DL +N I+ + I K CP A + +++N
Sbjct: 68 DDLAGSDVVIVTAGFTKAPGKSDKEWNRLDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTN 127
Query: 83 PVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHA 141
PV+ V ++ + +++G+ +LD R ++++ L + PR+V+ +VG H
Sbjct: 128 PVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHG 183
Query: 142 GVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 191
+L PL + ++ E++ + DR N E+V S ++
Sbjct: 184 NKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLH---ASPYVAP 239
Query: 192 AYAAAKFADACLRGLRGD---AGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPL 248
A A + A++ L+ L+ + ++E Y S + F + V LG G+E++ L L
Sbjct: 240 AAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGANGVEQVIEL-QL 294
Query: 249 NEYERAGLEKAKKE 262
N E+A ++A E
Sbjct: 295 NSEEKAKFDEAIAE 308
>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p
Mutant Complexed With Nadh And Oxamate
Length = 322
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 114/251 (45%), Gaps = 26/251 (10%)
Query: 28 DALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 82
D L G D+VI+ AG + PG RDDL +N I+ + I K CP A + +++N
Sbjct: 68 DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTN 127
Query: 83 PVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHA 141
PV+ + ++ + +++G+ +LD R ++++ L + PR+V+ +VG H
Sbjct: 128 PVD----VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHG 183
Query: 142 GVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 191
+L PL + ++ E++ + DR N E+V A +
Sbjct: 184 NKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLHAAPYVAPAAA 242
Query: 192 AYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEY 251
A+ L+ + + ++E Y S + F + V LG G+E++ L LN
Sbjct: 243 IIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGANGVEQVIEL-QLNSE 297
Query: 252 ERAGLEKAKKE 262
E+A ++A E
Sbjct: 298 EKAKFDEAIAE 308
>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FM3|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FNZ|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FNZ|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FRM|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|C Chain C, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|D Chain D, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
Length = 321
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 70/124 (56%), Gaps = 6/124 (4%)
Query: 30 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 89
++G D+VII A +P +P R +L NA I+ ++ EG+ K CP A V I+NP++
Sbjct: 70 ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLD---- 125
Query: 90 IAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL 148
+ F+KV ++ G+ +LD R TF+A+ G++ +V V+GGH G ++P
Sbjct: 126 VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGH-GDGMVPA 184
Query: 149 LSQV 152
S V
Sbjct: 185 TSSV 188
>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor Analog (3-Acetylpyridine Adenine
Dinucleotide).
pdb|2EWD|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor Analog (3-Acetylpyridine Adenine
Dinucleotide)
Length = 317
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 70/124 (56%), Gaps = 6/124 (4%)
Query: 30 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 89
++G D+VII A +P +P R +L NA I+ ++ EG+ K CP A V I+NP++
Sbjct: 70 ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLD---- 125
Query: 90 IAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL 148
+ F+KV ++ G+ +LD R TF+A+ G++ +V V+GGH G ++P
Sbjct: 126 VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGH-GDGMVPA 184
Query: 149 LSQV 152
S V
Sbjct: 185 TSSV 188
>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form
pdb|1PZF|A Chain A, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|B Chain B, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|C Chain C, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|D Chain D, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZH|A Chain A, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|B Chain B, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|C Chain C, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|D Chain D, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
Length = 331
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 73/137 (53%), Gaps = 13/137 (9%)
Query: 23 QQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIV 77
+ E ALTG D VI+ AG+ + PG +R+DL N+ I++ + + I K CPK +
Sbjct: 69 EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFI 128
Query: 78 NLISNPVNSTVPIAAEVFKKVGTYDPKRLLG--VTMLDVVRANTFVAEVLGLDPREVDVP 135
+++NP++ V + E + P ++ MLD R +VA+ L + PR+V
Sbjct: 129 IVVTNPLDCMVKVMCE-----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQAT 183
Query: 136 VVGGHAGVTILPLLSQV 152
V+G H G ++PL+ +
Sbjct: 184 VIGTH-GDCMVPLVRYI 199
>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|C Chain C, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|D Chain D, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
Length = 329
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 73/137 (53%), Gaps = 13/137 (9%)
Query: 23 QQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIV 77
+ E ALTG D VI+ AG+ + PG +R+DL N+ I++ + + I K CPK +
Sbjct: 67 EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFI 126
Query: 78 NLISNPVNSTVPIAAEVFKKVGTYDPKRLLG--VTMLDVVRANTFVAEVLGLDPREVDVP 135
+++NP++ V + E + P ++ MLD R +VA+ L + PR+V
Sbjct: 127 IVVTNPLDCMVKVMCE-----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQAT 181
Query: 136 VVGGHAGVTILPLLSQV 152
V+G H G ++PL+ +
Sbjct: 182 VIGTH-GDCMVPLVRYI 197
>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|B Chain B, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|C Chain C, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|D Chain D, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
Length = 331
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 73/137 (53%), Gaps = 13/137 (9%)
Query: 23 QQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIV 77
+ E ALTG D VI+ AG+ + PG +R+DL N+ I++ + + I K CPK +
Sbjct: 69 EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFI 128
Query: 78 NLISNPVNSTVPIAAEVFKKVGTYDPKRLLG--VTMLDVVRANTFVAEVLGLDPREVDVP 135
+++NP++ V + E + P ++ MLD R +VA+ L + PR+V
Sbjct: 129 IVVTNPLDCMVKVMXE-----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQAT 183
Query: 136 VVGGHAGVTILPLLSQV 152
V+G H G ++PL+ +
Sbjct: 184 VIGTH-GDCMVPLVRYI 199
>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei
pdb|1OC4|B Chain B, Lactate Dehydrogenase From Plasmodium Berghei
Length = 322
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 117/254 (46%), Gaps = 32/254 (12%)
Query: 28 DALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 82
D L D+VI+ AG + PG RDDL +N I+ + I CP A + +++N
Sbjct: 68 DDLKDADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNNCPNAFIIVVTN 127
Query: 83 PVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHA 141
PV+ V ++ + +++G+ +LD R ++++ L + PR+V+ +VG H
Sbjct: 128 PVDVMV----QLLHQHSGVPKNKIVGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHG 183
Query: 142 GVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 191
+L PL + + +T E+D + DR N E+V S ++
Sbjct: 184 NKMVLLKRYITVGGIPLQEFIN-NKKITDQELDAIFDRTINTALEIVNLH---ASPYVAP 239
Query: 192 AYAAAKFADACLRGLRGD---AGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPL 248
A A + A++ +R LR + ++E Y + F + + +G G+E++ L L
Sbjct: 240 AAAIIEMAESYIRDLRKVLICSTLLEGQYGHKDI----FAGTPLVIGGNGVEQVIEL-QL 294
Query: 249 NEYERAGLEKAKKE 262
N E+ ++A E
Sbjct: 295 NADEKKKFDEAVAE 308
>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|B Chain B, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|C Chain C, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|D Chain D, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|A Chain A, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|B Chain B, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|C Chain C, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|D Chain D, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|E Chain E, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|F Chain F, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|3VKV|A Chain A, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|B Chain B, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|C Chain C, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|D Chain D, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|E Chain E, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|F Chain F, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
Length = 326
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 112/252 (44%), Gaps = 42/252 (16%)
Query: 34 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 93
D+V+I AG P+KPG TR DL N N I+K++ + I I + +NPV+ I
Sbjct: 78 DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTY 133
Query: 94 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ- 151
K+ + R++G T LD R +AE++ +D R V ++G H G T P+ S
Sbjct: 134 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHA 192
Query: 152 ----------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 201
VK + ++ + + +++ E+++ K G+ +A A A+ + A
Sbjct: 193 NIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLK---GATFYGIATALARISKA 249
Query: 202 CLRG----------LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEY 251
L + G G+ + + + + R GI+ I + PL ++
Sbjct: 250 ILNDENAVLPLSVYMDGQYGLNDI-----------YIGTPAVINRNGIQNILEI-PLTDH 297
Query: 252 ERAGLEKAKKEL 263
E ++K+ +L
Sbjct: 298 EEESMQKSASQL 309
>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|B Chain B, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|C Chain C, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|D Chain D, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|E Chain E, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|F Chain F, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
Length = 326
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 112/252 (44%), Gaps = 42/252 (16%)
Query: 34 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 93
D+V+I AG P+KPG TR DL N N I+K++ + I I + +NPV+ I
Sbjct: 78 DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTY 133
Query: 94 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ- 151
K+ + R++G T LD R +A+++ +D R V ++G H G T P+ S
Sbjct: 134 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAKMVNVDARSVHAYIMGEH-GDTEFPVWSHA 192
Query: 152 ----------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 201
VK + ++ + + ++N E+++ K G+ +A A A+ + A
Sbjct: 193 NIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKLK---GATFYGIATALARISKA 249
Query: 202 CLRG----------LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEY 251
L + G G+ + + + + R GI+ I + PL ++
Sbjct: 250 ILNDENAVLPLSVYMDGQYGLNDI-----------YIGTPAVINRNGIQNILEI-PLTDH 297
Query: 252 ERAGLEKAKKEL 263
E ++K+ +L
Sbjct: 298 EEESMQKSASQL 309
>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate
Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms
Resolution
Length = 325
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 112/252 (44%), Gaps = 42/252 (16%)
Query: 34 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 93
D+V+I AG P++PG TR DL N N I+K++ + I I + +NPV+ I
Sbjct: 77 DLVVITAGAPKQPGETRLDLVNKNLKILKSIVDPIVDSGFNLIFLVAANPVD----ILTY 132
Query: 94 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ- 151
K+ + R++G T LD R +AE++ +D R V ++G H G T P+ S
Sbjct: 133 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHA 191
Query: 152 ----------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 201
VK + ++ + + +++ E+++ K G+ +A A A+ + A
Sbjct: 192 NIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLK---GATFYGIATALARISKA 248
Query: 202 CLRG----------LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEY 251
L + G G+ + + + + R GI+ I + PL ++
Sbjct: 249 ILNDENAVLPLSVYMDGQYGINDL-----------YIGTPAVINRNGIQNILEI-PLTDH 296
Query: 252 ERAGLEKAKKEL 263
E ++K+ +L
Sbjct: 297 EEESMQKSASQL 308
>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYG|B Chain B, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYE|A Chain A, Crystal Structure Of The Mj0490 Gene Product, The Family
Of LactateMALATE DEHYDROGENASE, DIMERIC STRUCTURE
Length = 313
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 14/159 (8%)
Query: 34 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 93
D+VII +GVPRK GM+R DL NA IV + IA+ C I +I+NPV+ + A
Sbjct: 76 DVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-VITNPVD-VMTYKAL 133
Query: 94 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ- 151
V K ++ ++ G+ T LD +R +A+ G+ EV ++G H G +++PLLS
Sbjct: 134 VDSK---FERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRIIGEH-GDSMVPLLSAT 189
Query: 152 ------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGA 184
++ ID + + ++ G +++ K G+
Sbjct: 190 SIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLKGGS 228
>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum
Cth-1135
Length = 318
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 117/268 (43%), Gaps = 37/268 (13%)
Query: 20 FLGQQQLE----DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 75
F+GQ L + D++++ AG RKPG TR DL N I K + + I K
Sbjct: 58 FMGQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHG 117
Query: 76 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDV 134
++ ++SNPV+ I + +K +++G T+LD +R ++E LG+D + V
Sbjct: 118 VILVVSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHG 173
Query: 135 PVVGGHAGVTILPLLSQVK------------PSCSLTPTEIDYLTDRIQNGGTEVVEAKT 182
++G H G + LPL S P C+ T + + + ++ G +++ K
Sbjct: 174 YIIGEH-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNK- 231
Query: 183 GAGSATLSMAYAAAKFADACLRG---LRGDAGVIECAY-VASTVTELPFFASKVRLGRAG 238
G+ +A + + L+ +R VI Y + LP + G
Sbjct: 232 --GATYYGIAVSINTIVETLLKNQNTIRTVGTVINGMYGIEDVAISLPSIVNS-----EG 284
Query: 239 IEEI--YSLGPLNEYE-RAGLEKAKKEL 263
++E+ ++L P E R E+ KK L
Sbjct: 285 VQEVLQFNLTPEEEEALRFSAEQVKKVL 312
>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1HLP|B Chain B, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1D3A|A Chain A, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
pdb|1D3A|B Chain B, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
Length = 303
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 109/245 (44%), Gaps = 20/245 (8%)
Query: 32 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA 91
G D+V+I AG+PR+PG TR DL NA I++ + + + I SNPV+ +
Sbjct: 70 GSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LL 125
Query: 92 AEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLS 150
+ G ++++G LD R ++E + V+ ++G H G +P+ S
Sbjct: 126 NRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFS 184
Query: 151 QVKPSCS---LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLR 207
+V+ + + E + L +Q +V+E K G+ A A +A L
Sbjct: 185 KVRVDGTDPEFSGDEKEQLLGDLQESAMDVIERK---GATEWGPARGVAHMVEAILH--- 238
Query: 208 GDAGVIECAYV---ASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 264
D G + A V E F VRLG G+EEI L++YE+ + A ++L+
Sbjct: 239 -DTGEVLPASVKLEGEFGHEDTAFGVPVRLGSNGVEEIVEW-DLDDYEQDLMADAAEKLS 296
Query: 265 GSIQK 269
K
Sbjct: 297 DQYDK 301
>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
pdb|2HLP|B Chain B, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
Length = 303
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 109/245 (44%), Gaps = 20/245 (8%)
Query: 32 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA 91
G D+V+I AG+PR+PG TR DL NA I++ + + + I SNPV+ +
Sbjct: 70 GSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LL 125
Query: 92 AEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLS 150
+ G ++++G LD R ++E + V+ ++G H G +P+ S
Sbjct: 126 NRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFS 184
Query: 151 QVKPSCS---LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLR 207
+V+ + + E + L +Q +V+E K G+ A A +A L
Sbjct: 185 KVRVDGTDPEFSGDEKEQLLGDLQESAMDVIERK---GATEWGPARGVAHMVEAILH--- 238
Query: 208 GDAGVIECAYV---ASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 264
D G + A V E F VRLG G+EEI L++YE+ + A ++L+
Sbjct: 239 -DTGRVLPASVKLEGEFGHEDTAFGVPVRLGSNGVEEIVEW-DLDDYEQDLMADAAEKLS 296
Query: 265 GSIQK 269
K
Sbjct: 297 DQYDK 301
>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|B Chain B, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|C Chain C, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|D Chain D, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5Q|A Chain A, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|B Chain B, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|C Chain C, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|D Chain D, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5R|A Chain A, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|B Chain B, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|C Chain C, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|D Chain D, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
Length = 304
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 109/245 (44%), Gaps = 20/245 (8%)
Query: 32 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA 91
G D+V+I AG+PR+PG TR DL NA I++ + + + I SNPV+ +
Sbjct: 71 GSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LL 126
Query: 92 AEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLS 150
+ G ++++G LD R ++E + V+ ++G H G +P+ S
Sbjct: 127 NRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFS 185
Query: 151 QVKPSCS---LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLR 207
+V+ + + E + L +Q +V+E K G+ A A +A L
Sbjct: 186 KVRVDGTDPEFSGDEKEQLLGDLQESAMDVIERK---GATEWGPARGVAHMVEAILH--- 239
Query: 208 GDAGVIECAYV---ASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 264
D G + A V E F VRLG G+EEI L++YE+ + A ++L+
Sbjct: 240 -DTGEVLPASVKLEGEFGHEDTAFGVPVRLGSNGVEEIVEW-DLDDYEQDLMADAAEKLS 297
Query: 265 GSIQK 269
K
Sbjct: 298 DQYDK 302
>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D0O|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D4P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
pdb|3D4P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
Length = 317
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 109/247 (44%), Gaps = 33/247 (13%)
Query: 34 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 93
D+V+I AG +KPG TR DL + N I K++ + I + +NPV+ I A
Sbjct: 76 DLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVD----ILAY 131
Query: 94 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 152
K +R++G T+LD R ++E + PR VD ++G H G T LP+ S
Sbjct: 132 ATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH-GDTELPVWSHA 190
Query: 153 ----KPSCSLTP------TEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 202
+P +L +I+ + + ++ ++++AK G+ +A A+ +A
Sbjct: 191 NIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK---GATYYGVAMGLARITEAI 247
Query: 203 LRGLRGDAGVIECAYVASTVTELPFFASKVRLG------RAGIEEIYSLGPLNEYERAGL 256
R + S + E + V +G R GI + + PLN+ E++
Sbjct: 248 FRNE-------DAVLTVSALLEGEYEEEDVYIGVPAVINRNGIRNVVEI-PLNDEEQSKF 299
Query: 257 EKAKKEL 263
+ K L
Sbjct: 300 AHSAKTL 306
>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
pdb|3H3J|B Chain B, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
Length = 317
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 109/242 (45%), Gaps = 23/242 (9%)
Query: 34 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 93
D+V+I AG +KPG TR DL + N I K++ + I + +NPV+ I A
Sbjct: 76 DLVVICAGARQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVD----ILAY 131
Query: 94 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 152
K +R++G T+LD R ++E + PR VD ++G H G T LP+ S
Sbjct: 132 ATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH-GDTELPVWSHA 190
Query: 153 ----KPSCSLTP------TEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 202
+P +L +I+ + + ++ ++++AK G+ +A A+ +A
Sbjct: 191 NIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK---GATYYGVAMGLARITEAI 247
Query: 203 LRGLRGDAGVIECAYVASTVTELP-FFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKK 261
R DA + A + E + + R GI + + PLN+ E++ + K
Sbjct: 248 FRN--EDAVLTVSALLEGEYEEEDVYIGVPAVINRNGIRNVVEI-PLNDEEQSKFAHSAK 304
Query: 262 EL 263
L
Sbjct: 305 TL 306
>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
pdb|2X0R|B Chain B, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
Length = 304
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 107/245 (43%), Gaps = 20/245 (8%)
Query: 32 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA 91
G D+V+I AG+PR+PG TR DL NA I++ + + + I SNPV+ +
Sbjct: 71 GSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LL 126
Query: 92 AEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLS 150
+ G ++++G LD R ++E + V+ ++G H G +P+ S
Sbjct: 127 NRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFS 185
Query: 151 QVKPSCS---LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLR 207
+V + + E + L +Q +V+E K G+ A A +A L
Sbjct: 186 KVSVDGTDPEFSGDEKEQLLGDLQESAMDVIERK---GATEWGPARGVAHMVEAILH--- 239
Query: 208 GDAGVIECAYV---ASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 264
D G + A V E F V LG G+EEI L++YE+ + A ++L+
Sbjct: 240 -DTGEVLPASVKLEGEFGHEDTAFGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLS 297
Query: 265 GSIQK 269
K
Sbjct: 298 DQYDK 302
>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|B Chain B, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|C Chain C, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|D Chain D, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
Length = 303
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 107/245 (43%), Gaps = 20/245 (8%)
Query: 32 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA 91
G D+V+I AG+PR+PG TR DL NA I++ + + + I SNPV+ +
Sbjct: 70 GSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LL 125
Query: 92 AEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLS 150
+ G ++++G LD R ++E + V+ ++G H G +P+ S
Sbjct: 126 NRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFS 184
Query: 151 QVKPSCS---LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLR 207
+V + + E + L +Q +V+E K G+ A A +A L
Sbjct: 185 KVSVDGTDPEFSGDEKEQLLGDLQESAMDVIERK---GATEWGPARGVAHMVEAILH--- 238
Query: 208 GDAGVIECAYV---ASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 264
D G + A V E F V LG G+EEI L++YE+ + A ++L+
Sbjct: 239 -DTGEVLPASVKLEGEFGHEDTAFGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLS 296
Query: 265 GSIQK 269
K
Sbjct: 297 DQYDK 301
>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|B Chain B, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|C Chain C, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|D Chain D, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
Length = 310
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 22/181 (12%)
Query: 30 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 89
L G V++ AGV ++PG TR L + NA + + + + P+A++ + +NPV+
Sbjct: 65 LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD---- 120
Query: 90 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL-- 146
+ +V ++ P R++G T+LD R +AE L + P+ V V+G H +L
Sbjct: 121 VMTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 147 --------PLLSQVKP-SCSLTPTEIDYLTDRIQNGGTEVVEAK------TGAGSATLSM 191
PLL + +L+P + + + ++ ++E K GAG A L
Sbjct: 181 SSAQVGGVPLLEFAEARGAALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 192 A 192
A
Sbjct: 241 A 241
>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|B Chain B, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|C Chain C, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|D Chain D, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|E Chain E, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|F Chain F, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|G Chain G, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|H Chain H, Structure Of Tt0471 Protein From Thermus Thermophilus
Length = 310
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 22/181 (12%)
Query: 30 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 89
L G V++ AGV ++PG TR L + NA + + + + P+A++ + +NPV+
Sbjct: 65 LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD---- 120
Query: 90 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL-- 146
+ +V ++ P R++G T+LD R +AE L + P+ V V+G H +L
Sbjct: 121 VXTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 147 --------PLLSQVKPSC-SLTPTEIDYLTDRIQNGGTEVVEAK------TGAGSATLSM 191
PLL + +L+P + + + ++ ++E K GAG A L
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 192 A 192
A
Sbjct: 241 A 241
>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V7P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
Length = 310
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 22/181 (12%)
Query: 30 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 89
L G V++ AGV ++PG TR L + NA + + + + P+A++ + +NPV+
Sbjct: 65 LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD---- 120
Query: 90 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL-- 146
+ +V ++ P R++G T+LD R +AE L + P+ V V+G H +L
Sbjct: 121 VMTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 147 --------PLLSQVKPSC-SLTPTEIDYLTDRIQNGGTEVVEAK------TGAGSATLSM 191
PLL + +L+P + + + ++ ++E K GAG A L
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 192 A 192
A
Sbjct: 241 A 241
>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|E Chain E, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|F Chain F, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|G Chain G, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|H Chain H, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
Length = 326
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 97/238 (40%), Gaps = 34/238 (14%)
Query: 34 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 93
DIV I AG +KPG TR +L N I K + + I + +NPV+ I
Sbjct: 75 DIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVD----ILTY 130
Query: 94 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ- 151
K +R++G T LD R ++E G P+ V ++G H G T LP+ S
Sbjct: 131 ATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVHAHIIGEH-GDTELPVWSHA 189
Query: 152 ----------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 201
V+ + + E+D + D ++N ++E K G+ +A + A+ A
Sbjct: 190 NVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK---GATYYGVAMSLARITKA 246
Query: 202 CLRGLRGDAGVIECAYVASTVTELPFFASKVRLG------RAGIEEIYSLGPLNEYER 253
L ST + + A V +G R GI I L LNE E+
Sbjct: 247 ILHNEN-------SILTVSTYLDGQYGADDVYIGVPAVVNRGGIAGITELN-LNEKEK 296
>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|B Chain B, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|C Chain C, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|D Chain D, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
Length = 331
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 106/252 (42%), Gaps = 23/252 (9%)
Query: 35 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 94
+VII AG G TR DL N I+K + G+ + P + +++NPV+ I V
Sbjct: 90 LVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVD----ILTYV 145
Query: 95 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 153
K+ + R++G LD R + E LG++P V+G H G + +P+ S V
Sbjct: 146 VWKISGFPVGRVIGSGCNLDSARFRYLIGEKLGVNPTSCHGWVLGEH-GDSSVPIWSGVN 204
Query: 154 PSC----SLTPT--------EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 201
+ SL P + ++ GG EV++ K G + ++ + A +
Sbjct: 205 VAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYEVLDMK---GYTSWAIGLSVTDLARS 261
Query: 202 CLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKK 261
L+ L+ V + E F + LG +GI + + E E GL K
Sbjct: 262 ILKNLKRVHPVTTLVKGFHGIKEEVFLSIPCVLGESGITDFVKVNMTAEEE--GLLKKSA 319
Query: 262 ELAGSIQKGVSF 273
+ ++QK +
Sbjct: 320 DTLWNMQKNLEL 331
>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari
pdb|2V65|B Chain B, Apo Ldh From The Psychrophile C. Gunnari
Length = 331
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 111/252 (44%), Gaps = 23/252 (9%)
Query: 35 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 94
+V++ AG ++ G +R +L N I K + I K P I+ ++SNPV+ I V
Sbjct: 90 VVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVD----ILTYV 145
Query: 95 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 153
K+ + R++G T LD R + E L L P +VG H G + +P+ S V
Sbjct: 146 AWKLSGFPRHRVIGSGTNLDSARFRHLIGEKLHLHPSSCHAWIVGEH-GDSSVPVWSGVN 204
Query: 154 PS----CSLTP---TEID-----YLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 201
+ L P TE D + + +G EV++ K G + ++ + A ++
Sbjct: 205 VAGVSLQGLNPQMGTEGDGENWKAIHKEVVDGAYEVIKLK---GYTSWAIGMSVADLVES 261
Query: 202 CLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKK 261
++ + V V + F + LG +G+ ++ + L E L+K+ +
Sbjct: 262 IIKNMHKVHPVSTLVQGMHGVKDEVFLSVPCVLGNSGLTDVIHM-TLKAEEEKQLQKSAE 320
Query: 262 ELAGSIQKGVSF 273
L G +QK ++
Sbjct: 321 TLWG-VQKELTL 331
>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXB|B Chain B, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXJ|A Chain A, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|B Chain B, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|C Chain C, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|D Chain D, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|3ZZN|A Chain A, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|B Chain B, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|C Chain C, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|D Chain D, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
Length = 310
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 22/181 (12%)
Query: 30 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 89
L G V++ AGV ++PG TR L + NA + + + + P+A++ + +NPV+
Sbjct: 65 LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD---- 120
Query: 90 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL-- 146
+ +V + P R++G T+LD R +AE L + P+ V V+G H +L
Sbjct: 121 VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 147 --------PLLSQVKPSC-SLTPTEIDYLTDRIQNGGTEVVEAK------TGAGSATLSM 191
PLL + +L+P + + + ++ ++E K GAG A L
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 192 A 192
A
Sbjct: 241 A 241
>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|B Chain B, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|C Chain C, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|D Chain D, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|E Chain E, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|F Chain F, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|G Chain G, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|H Chain H, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
Length = 331
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 108/249 (43%), Gaps = 17/249 (6%)
Query: 35 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 94
+VII AG ++ G +R +L N I K + + K P + ++SNPV+ I V
Sbjct: 90 LVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNPVD----ILTYV 145
Query: 95 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 153
K+ + R++G LD R + E LG+ P V+G H G + +P+ S +
Sbjct: 146 AWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEH-GDSSVPVWSGMN 204
Query: 154 PS-CSLTPTEIDYLTDRIQNGGTEV--------VEAKTGAGSATLSMAYAAAKFADACLR 204
+ SL D TD+ + EV E G + ++ + A A++ ++
Sbjct: 205 VAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMK 264
Query: 205 GLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 264
LR V + + F + LG+ GI ++ + L E A L+K+ L
Sbjct: 265 NLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNGISDLVKV-TLTSEEEARLKKSADTLW 323
Query: 265 GSIQKGVSF 273
G IQK + F
Sbjct: 324 G-IQKELQF 331
>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|B Chain B, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|C Chain C, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|D Chain D, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
Length = 337
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 108/249 (43%), Gaps = 17/249 (6%)
Query: 35 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 94
+VII AG ++ G +R +L N I K + + K P + ++SNPV+ I V
Sbjct: 90 LVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNPVD----ILTYV 145
Query: 95 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 153
K+ + R++G LD R + E LG+ P V+G H G + +P+ S +
Sbjct: 146 AWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEH-GDSSVPVWSGMN 204
Query: 154 PS-CSLTPTEIDYLTDRIQNGGTEV--------VEAKTGAGSATLSMAYAAAKFADACLR 204
+ SL D TD+ + EV E G + ++ + A A++ ++
Sbjct: 205 VAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMK 264
Query: 205 GLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 264
LR V + + F + LG+ GI ++ + L E A L+K+ L
Sbjct: 265 NLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNGISDLVKV-TLTSEEEARLKKSADTLW 323
Query: 265 GSIQKGVSF 273
G IQK + F
Sbjct: 324 G-IQKELQF 331
>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
pdb|1V6A|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
Length = 332
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 108/251 (43%), Gaps = 21/251 (8%)
Query: 35 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 94
+V++ AG ++ G +R +L N I K + I K P I+ ++SNPV+ I V
Sbjct: 91 VVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIIKYSPNCILLVVSNPVD----ILTYV 146
Query: 95 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH--------AGVTI 145
K+ R++G T LD R + E LG+ P V+G H +GV +
Sbjct: 147 AWKLSGLPRNRVIGSGTNLDSARFRHLMGEKLGIHPSNCHGWVIGEHGDSSVPVWSGVNV 206
Query: 146 LPLLSQ-VKPSCSLTPTEIDY--LTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 202
+ Q + P + D+ + + + EV++ K G + ++ +AA +
Sbjct: 207 AGVFLQGLNPDMGTDKDKEDWKSVHKMVVDSAYEVIKLK---GYTSWAIGMSAADLCQSI 263
Query: 203 LRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKE 262
L+ LR V V E F + LG +G+ ++ + L E L K+ +
Sbjct: 264 LKNLRKCHPVSTLVKGMHGVNEEVFLSVPCILGNSGLTDVVHM-TLKSDEEKQLVKSAET 322
Query: 263 LAGSIQKGVSF 273
L G +QK ++
Sbjct: 323 LWG-VQKDLTL 332
>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
pdb|3FI9|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
Length = 343
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 110/256 (42%), Gaps = 31/256 (12%)
Query: 26 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP--KAIVNLISNP 83
+++ALT ++ G PRK GMTR+DL NA I L + I CP K ++ +I NP
Sbjct: 70 IKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVI-IIFNP 128
Query: 84 VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV-DVPVVGGH-- 140
+ I V P ++ + LD R + +A+ G+ V + GGH
Sbjct: 129 AD----ITGLVTLIYSGLKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGHGE 184
Query: 141 --------AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMA 192
A V PL + LT + L R+ GG +++ + S+ S +
Sbjct: 185 QMAVFASTAKVNGTPLTDLIGTD-KLTNEQWAELKQRVVKGGANIIKLR--GRSSFQSPS 241
Query: 193 YAAAKFADACLRG--LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIE--EIYSLGPL 248
Y + + A + G R AG YV E A + + + G++ +I LG
Sbjct: 242 YVSIEMIRAAMGGEAFRWPAG----CYVNVPGFEHIMMAMETTITKDGVKHSDINQLG-- 295
Query: 249 NEYERAGLEKAKKELA 264
NE ERA L+++ LA
Sbjct: 296 NEAERAALKESYSHLA 311
>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|B Chain B, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|C Chain C, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|D Chain D, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ2|A Chain A, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|B Chain B, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|C Chain C, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|D Chain D, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJE|A Chain A, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|B Chain B, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|C Chain C, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|D Chain D, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJH|A Chain A, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|B Chain B, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|C Chain C, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|D Chain D, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJI|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJJ|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJK|A Chain A, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|B Chain B, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|C Chain C, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|D Chain D, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJL|A Chain A, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|B Chain B, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|C Chain C, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|D Chain D, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJN|A Chain A, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|B Chain B, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|C Chain C, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|D Chain D, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJO|A Chain A, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|B Chain B, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|C Chain C, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|D Chain D, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AL4|A Chain A, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|B Chain B, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|C Chain C, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|D Chain D, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
Length = 331
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 114/252 (45%), Gaps = 23/252 (9%)
Query: 35 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 94
+VII AG ++ G +R +L N I K + + K P+ + ++SNPV+ I V
Sbjct: 90 LVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVD----ILTYV 145
Query: 95 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 153
K+ + R++G LD R + E LG+ P V+G H G + +P+ S V
Sbjct: 146 AWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEH-GDSSVPVWSGVN 204
Query: 154 PSC----SLTP---TEIDY-----LTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 201
+ SL P T+ D + ++ + EV++ K G + ++ + A A++
Sbjct: 205 VAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLK---GYTSWAIGLSVADLAES 261
Query: 202 CLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKK 261
++ LR + + E F + LG+ GI ++ + L E A L+K+
Sbjct: 262 IMKNLRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVKV-TLTPDEEARLKKSAD 320
Query: 262 ELAGSIQKGVSF 273
L G IQK + F
Sbjct: 321 TLWG-IQKELQF 331
>pdb|4AJ4|A Chain A, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|B Chain B, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|C Chain C, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|D Chain D, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
Length = 332
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 114/252 (45%), Gaps = 23/252 (9%)
Query: 35 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 94
+VII AG ++ G +R +L N I K + + K P+ + ++SNPV+ I V
Sbjct: 91 LVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVD----ILTYV 146
Query: 95 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 153
K+ + R++G LD R + E LG+ P V+G H G + +P+ S V
Sbjct: 147 AWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEH-GDSSVPVWSGVN 205
Query: 154 PSC----SLTP---TEIDY-----LTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 201
+ SL P T+ D + ++ + EV++ K G + ++ + A A++
Sbjct: 206 VAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLK---GYTSWAIGLSVADLAES 262
Query: 202 CLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKK 261
++ LR + + E F + LG+ GI ++ + L E A L+K+
Sbjct: 263 IMKNLRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVKV-TLTPDEEARLKKSAD 321
Query: 262 ELAGSIQKGVSF 273
L G IQK + F
Sbjct: 322 TLWG-IQKELQF 332
>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQF|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
Length = 326
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 97/238 (40%), Gaps = 34/238 (14%)
Query: 34 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 93
DIV I AG +KPG TR +L N I K + + I + +NPV+ I
Sbjct: 75 DIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVD----ILTY 130
Query: 94 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ- 151
K +R++G T LD R ++E G P+ V ++G H G T LP+ S
Sbjct: 131 ATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEH-GDTELPVWSHA 189
Query: 152 ----------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 201
V+ + + E+D + D ++N ++E K G+ +A + A+ A
Sbjct: 190 NVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK---GATYYGVAMSLARITKA 246
Query: 202 CLRGLRGDAGVIECAYVASTVTELPFFASKVRLG------RAGIEEIYSLGPLNEYER 253
L ST + + A V +G R GI I L LNE E+
Sbjct: 247 ILHNEN-------SILTVSTYLDGQYGADDVYIGVPAVVNRGGIAGITELN-LNEKEK 296
>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Nadh
pdb|2X0J|A Chain A, 2.8 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Etheno-Nad
Length = 294
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 8/85 (9%)
Query: 30 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 89
L G +I+++ AG+ RKPGMTR DL + NAGI+K + + I + P++ + +++NP++
Sbjct: 67 LKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTY 126
Query: 90 IAA--------EVFKKVGTYDPKRL 106
I EVF D +RL
Sbjct: 127 IMWKESGKPRNEVFGMGNQLDSQRL 151
>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial
L-Lactate Dehydrogenase
pdb|1LLD|B Chain B, Molecular Basis Of Allosteric Activation Of Bacterial
L-Lactate Dehydrogenase
pdb|1LTH|T Chain T, T And R States In The Crystals Of Bacterial L-Lactate
Dehydrogenase Reveal The Mechanism For Allosteric
Control
pdb|1LTH|R Chain R, T And R States In The Crystals Of Bacterial L-Lactate
Dehydrogenase Reveal The Mechanism For Allosteric
Control
Length = 319
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 34 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 93
D+V+I AG +KPG +R +L I+K + + K P AI LI+NPV+ IA
Sbjct: 77 DMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD----IATH 132
Query: 94 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 152
V +K+ ++ G T LD R +A+ G++ + V + G H G + +PL
Sbjct: 133 VAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIAGEH-GDSEVPLWESA 191
Query: 153 K----PSCSLTP 160
P TP
Sbjct: 192 TIGGVPMSDWTP 203
>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|B Chain B, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|C Chain C, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|D Chain D, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
Length = 318
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 85/185 (45%), Gaps = 20/185 (10%)
Query: 34 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 93
D+V+I AG P+KPG +R DL N N I+ ++ + + I + +NPV+ I
Sbjct: 74 DLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVD----ILTY 129
Query: 94 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH----------AG 142
K + +R++G T LD R + + +DPR VD ++G H A
Sbjct: 130 ATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIMGEHGDSEFAAYSTAT 189
Query: 143 VTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAK----TGAGSATLSMAYAAAKF 198
+ P + V ++ ++ L D ++N +++ K G G+A + ++ A +
Sbjct: 190 IGTRP-VRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLKGATFYGIGTALMRISKAILRD 248
Query: 199 ADACL 203
+A L
Sbjct: 249 ENAVL 253
>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDT|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
Length = 332
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 110/252 (43%), Gaps = 23/252 (9%)
Query: 35 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 94
+V+I AG ++ G +R +L N I K + I K P + ++SNPV+ I V
Sbjct: 91 LVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVVSNPVD----ILTYV 146
Query: 95 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 153
K+ + R++G LD R + E LG+ P ++G H G + +P+ S V
Sbjct: 147 AWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWILGEH-GDSSVPVWSGVN 205
Query: 154 PS-CSLTPTEIDYLTD-----------RIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 201
+ SL + TD + + EV++ K G + ++ + A A++
Sbjct: 206 VAGVSLKNLHPELGTDADKEHWKAVHKEVVDSAYEVIKLK---GYTSWAIGLSVADLAES 262
Query: 202 CLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKK 261
++ LR + + E F + LG+ GI ++ + L E A L+K+
Sbjct: 263 IMKNLRRVHPISTMIKGLYGIKENVFLSVPCILGQNGISDVVKV-TLTPEEEAHLKKSAD 321
Query: 262 ELAGSIQKGVSF 273
L G IQK + F
Sbjct: 322 TLWG-IQKELQF 332
>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
Length = 317
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 109/252 (43%), Gaps = 24/252 (9%)
Query: 34 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 93
D+V+I AG +KPG TR DL + N I +++ E + + + + +NPV+ I
Sbjct: 76 DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD----ILTY 131
Query: 94 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ- 151
K +R++G T+LD R + E + P+ V ++G H G T LP+ SQ
Sbjct: 132 ATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQA 190
Query: 152 ---VKPSCSLTPT-------EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 201
V P L + +++ + +++ +++E K G+ +A A+ A
Sbjct: 191 YIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK---GATYYGIAMGLARVTRA 247
Query: 202 CLRGLRGDAGVIECAYVASTVTELP-FFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAK 260
L +A + AY+ E + + R GI E+ + LN+ E+ +
Sbjct: 248 ILH--NENAILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEI-ELNDDEKNRFHHSA 304
Query: 261 KELAGSIQKGVS 272
L + + +
Sbjct: 305 ATLKSVLARAFT 316
>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|B Chain B, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|C Chain C, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|D Chain D, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|E Chain E, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|F Chain F, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|G Chain G, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|H Chain H, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
Length = 316
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 109/252 (43%), Gaps = 24/252 (9%)
Query: 34 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 93
D+V+I AG +KPG TR DL + N I +++ E + + + + +NPV+ I
Sbjct: 76 DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD----ILTY 131
Query: 94 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ- 151
K +R++G T+LD R + E + P+ V ++G H G T LP+ SQ
Sbjct: 132 ATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQA 190
Query: 152 ---VKPSCSLTPT-------EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 201
V P L + +++ + +++ +++E K G+ +A A+ A
Sbjct: 191 YIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK---GATYYGIAMGLARVTRA 247
Query: 202 CLRGLRGDAGVIECAYVASTVTELP-FFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAK 260
L +A + AY+ E + + R GI E+ + LN+ E+ +
Sbjct: 248 ILH--NENAILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEI-ELNDDEKNRFHHSA 304
Query: 261 KELAGSIQKGVS 272
L + + +
Sbjct: 305 ATLKSVLARAFT 316
>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|B Chain B, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|C Chain C, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|D Chain D, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|E Chain E, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|F Chain F, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|G Chain G, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|H Chain H, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|4I8X|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I9H|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9N|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9U|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
Length = 331
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 110/252 (43%), Gaps = 23/252 (9%)
Query: 35 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 94
+VII AG ++ G +R +L N I K + + K P + ++SNPV+ I V
Sbjct: 90 LVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPHCKLLVVSNPVD----ILTYV 145
Query: 95 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 153
K+ + R++G LD R + E LG+ ++G H G + +P+ S +
Sbjct: 146 AWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGWILGEH-GDSSVPVWSGMN 204
Query: 154 PS-CSLTPTEIDYLTD-----------RIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 201
+ SL + TD ++ + EV++ K G T ++ + A A++
Sbjct: 205 VAGVSLKTLHPELGTDADKEQWKQVHKQVVDSAYEVIKLK---GYTTWAIGLSVADLAES 261
Query: 202 CLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKK 261
++ LR + + E F + LG+ GI ++ + L E A L+K+
Sbjct: 262 IMKNLRRVHPISTMLKGLYGIKEDVFLSVPCVLGQNGISDVVKV-TLTSEEEAHLKKSAD 320
Query: 262 ELAGSIQKGVSF 273
L G IQK + F
Sbjct: 321 TLWG-IQKELQF 331
>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|C Chain C, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|D Chain D, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
Length = 304
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Query: 22 GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 81
G +L DA +VI+ AG +KPG +R DL NA I + L I + P A++ + S
Sbjct: 61 GHSELADA----QVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTS 116
Query: 82 NPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH 140
NPV+ +A ++ + ++G T+LD R +A+ G+D V+G H
Sbjct: 117 NPVDLLTDLATQLAPG------QPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVLGEH 170
Query: 141 AGVTILPLLS 150
+L S
Sbjct: 171 GDSEVLAWSS 180
>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin
pdb|4H7P|B Chain B, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin
pdb|4I1I|A Chain A, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin In Complex
With Nad
pdb|4I1I|B Chain B, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin In Complex
With Nad
Length = 345
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 29 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI-VNLISNPVNST 87
A G+ I I+ PRK GM R DL +NA I K E IA V ++ NP N+
Sbjct: 97 AFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTN 156
Query: 88 VPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILP 147
I + + G +P+ + +T LD RA + +A G+ +V ++ G+ T +P
Sbjct: 157 ALILLKSAQ--GKLNPRHVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNHSSTQVP 214
>pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate
Dehydrogenase At 2.5-Angstroms Resolution
pdb|4MDH|B Chain B, Refined Crystal Structure Of Cytoplasmic Malate
Dehydrogenase At 2.5-Angstroms Resolution
Length = 334
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 8/140 (5%)
Query: 17 VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIA--KCCPK 74
++ + + E A +D+ I+ +PR+ GM R DL N I K C+G A K K
Sbjct: 65 LKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFK--CQGAALDKYAKK 122
Query: 75 AI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD 133
++ V ++ NP N+ A+ K + + +T LD RA +A LG+ +V
Sbjct: 123 SVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVK 179
Query: 134 VPVVGGHAGVTILPLLSQVK 153
++ G+ T P ++ K
Sbjct: 180 NVIIWGNHSSTQYPDVNHAK 199
>pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
pdb|5MDH|B Chain B, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
Length = 333
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 8/140 (5%)
Query: 17 VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIA--KCCPK 74
++ + + E A +D+ I+ +PR+ GM R DL N I K C+G A K K
Sbjct: 64 LKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFK--CQGAALDKYAKK 121
Query: 75 AI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD 133
++ V ++ NP N+ A+ K + + +T LD RA +A LG+ +V
Sbjct: 122 SVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVK 178
Query: 134 VPVVGGHAGVTILPLLSQVK 153
++ G+ T P ++ K
Sbjct: 179 NVIIWGNHSSTQYPDVNHAK 198
>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|B Chain B, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|C Chain C, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|D Chain D, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
Length = 333
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 35 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 94
IV++ AGV ++ G +R +L N + K + I K P I+ ++SNPV+ I V
Sbjct: 91 IVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVD----ILTYV 146
Query: 95 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 145
K+ R++G LD R +AE LG+ P ++G H ++
Sbjct: 147 TWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSV 198
>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I0Z|B Chain B, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
Length = 333
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 35 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 94
IV++ AGV ++ G +R +L N + K + I K P I+ ++SNPV+ I V
Sbjct: 91 IVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVD----ILTYV 146
Query: 95 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 145
K+ R++G LD R +AE LG+ P ++G H ++
Sbjct: 147 TWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSV 198
>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
pdb|5LDH|B Chain B, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
Length = 334
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 35 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 94
IV++ AGV ++ G +R +L N + K + I K P I+ ++SNPV+ I V
Sbjct: 92 IVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPNCIIIVVSNPVD----ILTYV 147
Query: 95 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 145
K+ R++G LD R + E LG+ P ++G H ++
Sbjct: 148 AWKLSGLPKHRVIGSGCNLDSARFRYLMGEKLGVHPSSCHGWILGEHGDSSV 199
>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
pdb|8LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 330
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 102/253 (40%), Gaps = 22/253 (8%)
Query: 32 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA 91
G +V+I AG ++ G +R +L N I K + I K P I+ ++SNPV+ +A
Sbjct: 89 GSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCIILVVSNPVDVLTYVA 148
Query: 92 AEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH--------AG 142
K+ R++G LD R + E LG+ V+G H +G
Sbjct: 149 W----KLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSCHGWVIGEHGDSVPSVWSG 204
Query: 143 VTILPLLSQVKPSCSLTPTEIDY--LTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFAD 200
+ + + ++ P + D+ L + + EV++ K G + ++ + A A+
Sbjct: 205 MNVASI--KLHPLDGTNKDKQDWKKLHKDVVDSAYEVIKLK---GYTSWAIGLSVADLAE 259
Query: 201 ACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAK 260
++ L V + + F + L GI I + L E L+K+
Sbjct: 260 TIMKNLCRVHPVSTMVKDFYGIKDNVFLSLPCVLNDHGISNIVKM-KLKPNEEQQLQKSA 318
Query: 261 KELAGSIQKGVSF 273
L IQK + F
Sbjct: 319 TTL-WDIQKDLKF 330
>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 329
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 102/253 (40%), Gaps = 22/253 (8%)
Query: 32 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA 91
G +V+I AG ++ G +R +L N I K + I K P I+ ++SNPV+ +A
Sbjct: 88 GSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCIILVVSNPVDVLTYVA 147
Query: 92 AEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH--------AG 142
K+ R++G LD R + E LG+ V+G H +G
Sbjct: 148 W----KLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSCHGWVIGEHGDSVPSVWSG 203
Query: 143 VTILPLLSQVKPSCSLTPTEIDY--LTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFAD 200
+ + + ++ P + D+ L + + EV++ K G + ++ + A A+
Sbjct: 204 MNVASI--KLHPLDGTNKDKQDWKKLHKDVVDSAYEVIKLK---GYTSWAIGLSVADLAE 258
Query: 201 ACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAK 260
++ L V + + F + L GI I + L E L+K+
Sbjct: 259 TIMKNLCRVHPVSTMVKDFYGIKDNVFLSLPCVLNDHGISNIVKM-KLKPNEEQQLQKSA 317
Query: 261 KELAGSIQKGVSF 273
L IQK + F
Sbjct: 318 TTL-WDIQKDLKF 329
>pdb|1HYH|A Chain A, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|B Chain B, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|C Chain C, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|D Chain D, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
Length = 309
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 19/187 (10%)
Query: 29 ALTGMDIVIIPAGVPR----KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 84
AL D+VI G + P R + +V+++ + + ++ +ISNPV
Sbjct: 66 ALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPV 125
Query: 85 NSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGV 143
+ + +F+ V + +++G T+LD R V E LDPR V +G H G
Sbjct: 126 D----VITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVSGYNLGEH-GN 180
Query: 144 TILPLLSQVK----PSCSLTPT-EIDY--LTDRIQNGGTEVVEAK--TGAGSATLSMAYA 194
+ S V+ P +L +ID + + + GG V+ K T G AT ++ A
Sbjct: 181 SQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGKGYTSYGVATSAIRIA 240
Query: 195 AAKFADA 201
A ADA
Sbjct: 241 KAVMADA 247
>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From
Flaveria Bidentis
Length = 385
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 4/106 (3%)
Query: 43 PRKPGMTRDDLFNINAGIVKTLCEGI-AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY 101
PR PGM R DL +IN I + + A P V ++ NP N+ I K
Sbjct: 129 PRGPGMERADLLDINGQIFAEQGKALNAVASPNVKVMVVGNPCNTNALIC---LKNAPNI 185
Query: 102 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILP 147
PK +T LD RA +A G+ +V + G+ T +P
Sbjct: 186 PPKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVP 231
>pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|B Chain B, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|C Chain C, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|D Chain D, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
Length = 375
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 13/172 (7%)
Query: 33 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI-VNLISNPVNSTVPIA 91
+D ++ PR PGM R L +IN I + + K + V ++ NP N+ I
Sbjct: 109 VDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALIC 168
Query: 92 AEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV-DVPVVGGHAGVTILPLLS 150
K K +T LD RA +A G+ +V +V + G H+ + L+
Sbjct: 169 ---LKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLN 225
Query: 151 Q------VKPSCSLTPTEIDYLTDRIQNGGTEVVE--AKTGAGSATLSMAYA 194
VK T + T +Q G +++ ++ A S +S+A A
Sbjct: 226 AKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKWGRSSAASTAVSIADA 277
>pdb|3U95|A Chain A, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|B Chain B, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|C Chain C, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|D Chain D, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|E Chain E, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|F Chain F, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
Length = 477
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 15/85 (17%)
Query: 64 LCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAE 123
+ E + K PKA + +NPV E+ + V +R G ++ V E
Sbjct: 142 IAEKMKKMAPKAYLMQTANPV-------FEITQAV-----RRWTGANIIGFCHGVAGVYE 189
Query: 124 V---LGLDPREVDVPVVGGHAGVTI 145
V LGLDP EVD V G + G+ +
Sbjct: 190 VFERLGLDPEEVDWQVAGVNHGIWL 214
>pdb|3P2Y|A Chain A, Crystal Structure Of Alanine DehydrogenasePYRIDINE
NUCLEOTIDE Transhydrogenase From Mycobacterium Smegmatis
Length = 381
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 23 QQQLEDALTGMDIVIIPAGVPRKP 46
QQ LEDA+T DIVI A VP +P
Sbjct: 256 QQALEDAITKFDIVITTALVPGRP 279
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 71 CCPKAIVNLISNPVNSTVPIAAEVFKKVGT 100
C PKA++NL SN N T+P+ ++ ++ G
Sbjct: 47 CLPKALLNL-SNGRNDTIPVLLDIAERTGN 75
>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila
Melanogaster
Length = 488
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Query: 27 EDALTGMDIVIIPAGVPRKP--------GMTRDDLFNINAGIVKTLCEG 67
E +T VI G PR P G+T DDLF+++ KTL G
Sbjct: 146 ERTITAQTFVIAVGGRPRYPDIPGAVEYGITSDDLFSLDREPGKTLVVG 194
>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
pdb|3DH9|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
Length = 482
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Query: 27 EDALTGMDIVIIPAGVPRKP--------GMTRDDLFNINAGIVKTLCEG 67
E +T VI G PR P G+T DDLF+++ KTL G
Sbjct: 142 ERTITAQTFVIAVGGRPRYPDIPGAVEYGITSDDLFSLDREPGKTLVVG 190
>pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
pdb|3DGH|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
Length = 483
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Query: 27 EDALTGMDIVIIPAGVPRKP--------GMTRDDLFNINAGIVKTLCEG 67
E +T VI G PR P G+T DDLF+++ KTL G
Sbjct: 146 ERTITAQTFVIAVGGRPRYPDIPGAVEYGITSDDLFSLDREPGKTLVVG 194
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,773,534
Number of Sequences: 62578
Number of extensions: 320367
Number of successful extensions: 1072
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 913
Number of HSP's gapped (non-prelim): 100
length of query: 276
length of database: 14,973,337
effective HSP length: 97
effective length of query: 179
effective length of database: 8,903,271
effective search space: 1593685509
effective search space used: 1593685509
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)