Query 023853
Match_columns 276
No_of_seqs 116 out of 1110
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 07:07:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023853.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023853hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01772 MDH_euk_gproteo mala 100.0 2.4E-65 5.2E-70 465.7 27.8 269 5-275 39-311 (312)
2 cd01337 MDH_glyoxysomal_mitoch 100.0 2.1E-65 4.6E-70 465.4 26.6 270 5-274 40-310 (310)
3 COG0039 Mdh Malate/lactate deh 100.0 3.5E-64 7.6E-69 453.4 25.7 259 5-275 41-312 (313)
4 PLN00135 malate dehydrogenase 100.0 4.8E-62 1E-66 443.2 26.1 261 5-275 31-309 (309)
5 PLN00106 malate dehydrogenase 100.0 3E-61 6.5E-66 440.4 29.2 265 4-268 57-322 (323)
6 PRK05086 malate dehydrogenase; 100.0 4.9E-60 1.1E-64 432.1 28.4 268 6-276 43-312 (312)
7 TIGR01759 MalateDH-SF1 malate 100.0 1.7E-60 3.7E-65 436.0 24.2 255 5-270 52-323 (323)
8 TIGR01756 LDH_protist lactate 100.0 4.4E-60 9.5E-65 431.3 25.3 259 5-274 33-312 (313)
9 cd05290 LDH_3 A subgroup of L- 100.0 3E-60 6.4E-65 432.1 23.7 249 5-267 40-306 (307)
10 TIGR01771 L-LDH-NAD L-lactate 100.0 3.1E-60 6.7E-65 430.9 22.1 249 4-265 36-299 (299)
11 PTZ00325 malate dehydrogenase; 100.0 2.5E-59 5.4E-64 427.4 27.6 267 4-276 47-319 (321)
12 PRK05442 malate dehydrogenase; 100.0 1.5E-59 3.3E-64 430.2 25.1 259 4-274 52-326 (326)
13 TIGR01757 Malate-DH_plant mala 100.0 1.4E-59 3.1E-64 436.6 24.5 259 5-274 93-368 (387)
14 cd00704 MDH Malate dehydrogena 100.0 3.3E-59 7.3E-64 427.9 25.9 255 5-271 49-323 (323)
15 cd05293 LDH_1 A subgroup of L- 100.0 2.5E-59 5.5E-64 427.1 23.6 252 4-268 43-311 (312)
16 PLN00112 malate dehydrogenase 100.0 3.6E-59 7.8E-64 439.8 25.0 259 5-274 149-424 (444)
17 KOG1495 Lactate dehydrogenase 100.0 4.7E-59 1E-63 403.7 22.3 241 17-271 74-330 (332)
18 PLN02602 lactate dehydrogenase 100.0 1E-58 2.2E-63 427.9 25.1 253 4-270 77-348 (350)
19 cd05291 HicDH_like L-2-hydroxy 100.0 3.1E-58 6.6E-63 419.9 23.6 252 4-268 40-305 (306)
20 PRK00066 ldh L-lactate dehydro 100.0 3.5E-58 7.6E-63 420.4 23.9 253 4-270 46-313 (315)
21 cd00300 LDH_like L-lactate deh 100.0 6.1E-58 1.3E-62 416.7 23.7 250 5-267 39-299 (300)
22 TIGR01758 MDH_euk_cyt malate d 100.0 8.4E-57 1.8E-61 412.2 27.4 258 5-271 48-323 (324)
23 cd01338 MDH_choloroplast_like 100.0 6.6E-57 1.4E-61 412.6 25.5 257 4-271 50-321 (322)
24 TIGR01763 MalateDH_bact malate 100.0 7.9E-57 1.7E-61 409.9 24.6 239 19-268 57-303 (305)
25 PTZ00117 malate dehydrogenase; 100.0 3.5E-56 7.6E-61 408.1 27.3 257 6-273 46-317 (319)
26 cd05295 MDH_like Malate dehydr 100.0 9.2E-57 2E-61 423.4 22.8 254 5-271 172-451 (452)
27 cd01336 MDH_cytoplasmic_cytoso 100.0 1.2E-55 2.6E-60 405.1 25.0 257 5-271 51-325 (325)
28 KOG1494 NAD-dependent malate d 100.0 5.4E-55 1.2E-59 380.1 27.5 263 13-275 77-340 (345)
29 PTZ00082 L-lactate dehydrogena 100.0 3.3E-55 7.2E-60 401.6 26.9 240 18-268 61-318 (321)
30 cd05292 LDH_2 A subgroup of L- 100.0 4.6E-55 9.9E-60 399.2 24.4 251 6-269 42-307 (308)
31 cd05294 LDH-like_MDH_nadp A la 100.0 6.7E-54 1.5E-58 391.5 24.6 252 5-269 44-308 (309)
32 cd01339 LDH-like_MDH L-lactate 100.0 6.5E-54 1.4E-58 390.4 23.8 250 7-267 40-299 (300)
33 PRK06223 malate dehydrogenase; 100.0 2E-52 4.4E-57 381.6 25.3 253 6-269 43-305 (307)
34 KOG1496 Malate dehydrogenase [ 100.0 1.3E-49 2.8E-54 340.0 16.3 263 5-275 53-331 (332)
35 cd00650 LDH_MDH_like NAD-depen 100.0 7.6E-48 1.6E-52 344.4 23.9 217 5-267 42-262 (263)
36 PF02866 Ldh_1_C: lactate/mala 100.0 1.9E-37 4.1E-42 261.2 13.4 159 110-274 1-174 (174)
37 cd05197 GH4_glycoside_hydrolas 99.9 2.7E-25 5.9E-30 210.5 22.1 224 19-263 61-384 (425)
38 cd05296 GH4_P_beta_glucosidase 99.9 1.2E-25 2.6E-30 212.6 19.4 226 19-261 62-371 (419)
39 PRK15076 alpha-galactosidase; 99.9 3.3E-24 7.2E-29 203.7 19.6 236 18-269 61-384 (431)
40 PF00056 Ldh_1_N: lactate/mala 99.9 7.2E-25 1.6E-29 178.5 6.2 100 5-108 42-141 (141)
41 cd05298 GH4_GlvA_pagL_like Gly 99.9 2.7E-22 5.9E-27 190.5 22.0 237 19-269 61-393 (437)
42 cd05297 GH4_alpha_glucosidase_ 99.9 4.4E-21 9.5E-26 182.3 21.6 235 18-268 60-386 (423)
43 COG1486 CelF Alpha-galactosida 99.8 3.6E-19 7.8E-24 166.6 18.1 240 18-270 63-397 (442)
44 PF02056 Glyco_hydro_4: Family 99.5 9.3E-14 2E-18 117.3 10.4 106 13-126 55-182 (183)
45 PF11975 Glyco_hydro_4C: Famil 96.5 0.026 5.6E-07 49.5 10.3 77 185-270 134-214 (232)
46 COG1004 Ugd Predicted UDP-gluc 95.0 0.36 7.8E-06 45.6 11.5 66 20-91 64-131 (414)
47 PLN02353 probable UDP-glucose 89.9 0.82 1.8E-05 44.5 6.5 69 19-88 65-135 (473)
48 PRK08293 3-hydroxybutyryl-CoA 89.8 1.1 2.4E-05 40.4 6.9 72 18-109 70-141 (287)
49 PF03721 UDPG_MGDP_dh_N: UDP-g 87.6 0.29 6.4E-06 41.4 1.5 78 18-101 62-141 (185)
50 PRK05808 3-hydroxybutyryl-CoA 87.2 1.9 4.1E-05 38.7 6.6 70 18-109 69-139 (282)
51 COG1250 FadB 3-hydroxyacyl-CoA 86.2 2.6 5.6E-05 38.7 6.9 73 15-109 66-139 (307)
52 PRK07066 3-hydroxybutyryl-CoA 86.0 3.2 7E-05 38.3 7.6 72 18-109 69-140 (321)
53 PRK06035 3-hydroxyacyl-CoA deh 85.2 4 8.6E-05 36.8 7.7 70 19-110 73-143 (291)
54 TIGR01915 npdG NADPH-dependent 84.3 8.6 0.00019 33.1 9.1 45 25-85 61-105 (219)
55 PF01210 NAD_Gly3P_dh_N: NAD-d 83.1 1.2 2.7E-05 36.4 3.1 48 18-81 55-103 (157)
56 COG0240 GpsA Glycerol-3-phosph 81.7 8.7 0.00019 35.6 8.4 65 19-99 58-124 (329)
57 PF02737 3HCDH_N: 3-hydroxyacy 80.5 3.9 8.5E-05 34.3 5.4 73 15-109 62-135 (180)
58 PRK08269 3-hydroxybutyryl-CoA 80.0 6.1 0.00013 36.3 6.9 72 18-110 63-137 (314)
59 PRK06130 3-hydroxybutyryl-CoA 76.6 8.7 0.00019 34.8 6.8 22 19-40 66-87 (311)
60 TIGR01181 dTDP_gluc_dehyt dTDP 75.4 11 0.00024 33.4 7.1 110 25-140 64-184 (317)
61 PF00185 OTCace: Aspartate/orn 75.2 2.9 6.3E-05 34.4 3.0 63 18-84 59-122 (158)
62 PRK06129 3-hydroxyacyl-CoA deh 74.9 12 0.00026 34.0 7.3 23 18-40 68-90 (308)
63 PF01073 3Beta_HSD: 3-beta hyd 74.7 9.8 0.00021 34.2 6.5 57 18-74 52-109 (280)
64 PF04016 DUF364: Domain of unk 73.5 3.8 8.3E-05 33.3 3.2 90 9-122 36-129 (147)
65 COG0796 MurI Glutamate racemas 71.8 56 0.0012 29.5 10.5 164 19-204 17-200 (269)
66 PRK12439 NAD(P)H-dependent gly 71.2 21 0.00045 33.1 8.0 71 19-107 64-136 (341)
67 PRK07819 3-hydroxybutyryl-CoA 70.5 14 0.00031 33.3 6.6 75 16-112 69-145 (286)
68 TIGR02440 FadJ fatty oxidation 70.3 15 0.00033 37.6 7.4 72 17-109 370-441 (699)
69 TIGR03026 NDP-sugDHase nucleot 70.0 23 0.00049 33.6 8.2 72 20-97 64-137 (411)
70 PRK09260 3-hydroxybutyryl-CoA 69.8 20 0.00042 32.2 7.3 22 19-40 68-89 (288)
71 PRK07530 3-hydroxybutyryl-CoA 69.1 18 0.00038 32.5 6.9 22 18-40 70-91 (292)
72 TIGR02437 FadB fatty oxidation 68.4 17 0.00037 37.3 7.3 72 16-109 377-449 (714)
73 TIGR02441 fa_ox_alpha_mit fatt 67.9 14 0.0003 38.2 6.5 72 16-109 399-471 (737)
74 KOG2304 3-hydroxyacyl-CoA dehy 67.6 4.9 0.00011 35.5 2.7 82 9-110 73-154 (298)
75 PF08885 GSCFA: GSCFA family; 67.4 13 0.00028 33.1 5.5 61 25-85 94-178 (251)
76 TIGR02279 PaaC-3OHAcCoADH 3-hy 66.1 23 0.0005 34.8 7.5 75 17-112 70-144 (503)
77 PRK11730 fadB multifunctional 65.9 20 0.00044 36.8 7.3 73 16-109 377-449 (715)
78 PRK11154 fadJ multifunctional 65.5 26 0.00056 36.0 8.0 72 16-109 374-446 (708)
79 cd05212 NAD_bind_m-THF_DH_Cycl 64.4 3.9 8.5E-05 33.1 1.5 39 4-43 43-82 (140)
80 PF02719 Polysacc_synt_2: Poly 63.7 16 0.00034 33.4 5.4 109 17-151 60-184 (293)
81 cd01836 FeeA_FeeB_like SGNH_hy 63.3 26 0.00057 28.8 6.4 50 31-83 66-115 (191)
82 cd01838 Isoamyl_acetate_hydrol 63.0 26 0.00055 28.7 6.3 49 32-83 63-116 (199)
83 PTZ00345 glycerol-3-phosphate 61.7 17 0.00037 34.2 5.5 50 16-81 77-129 (365)
84 cd01833 XynB_like SGNH_hydrola 61.2 29 0.00064 27.4 6.2 48 31-82 39-87 (157)
85 TIGR03376 glycerol3P_DH glycer 59.6 24 0.00053 32.8 6.0 48 18-81 68-116 (342)
86 PF02882 THF_DHG_CYH_C: Tetrah 59.0 6.4 0.00014 32.6 1.8 39 4-43 51-90 (160)
87 PLN02545 3-hydroxybutyryl-CoA 57.3 43 0.00093 30.1 7.1 21 19-40 71-91 (295)
88 PRK12921 2-dehydropantoate 2-r 56.3 61 0.0013 28.9 8.0 67 23-112 59-127 (305)
89 PRK14179 bifunctional 5,10-met 54.8 13 0.00028 33.8 3.2 41 3-44 172-213 (284)
90 PRK07531 bifunctional 3-hydrox 54.2 34 0.00074 33.5 6.3 21 20-40 68-88 (495)
91 KOG0093 GTPase Rab3, small G p 54.1 56 0.0012 27.0 6.4 50 57-127 108-158 (193)
92 COG0426 FpaA Uncharacterized f 53.8 74 0.0016 30.3 8.2 77 56-141 259-340 (388)
93 KOG2711 Glycerol-3-phosphate d 53.5 31 0.00066 32.3 5.4 69 20-104 93-167 (372)
94 PF13460 NAD_binding_10: NADH( 53.4 29 0.00063 28.2 5.0 45 25-81 53-97 (183)
95 PF11239 DUF3040: Protein of u 52.7 15 0.00033 26.7 2.8 19 247-265 2-20 (82)
96 cd01831 Endoglucanase_E_like E 52.5 54 0.0012 26.5 6.4 49 33-85 56-107 (169)
97 cd04502 SGNH_hydrolase_like_7 51.7 40 0.00087 27.2 5.6 48 31-82 49-97 (171)
98 cd00762 NAD_bind_malic_enz NAD 51.3 40 0.00087 30.1 5.7 69 23-110 95-167 (254)
99 PRK08229 2-dehydropantoate 2-r 51.2 78 0.0017 28.8 7.9 49 20-85 62-111 (341)
100 cd01844 SGNH_hydrolase_like_6 51.2 35 0.00076 27.9 5.1 48 31-84 56-103 (177)
101 PF03807 F420_oxidored: NADP o 51.0 13 0.00028 27.1 2.2 43 25-83 54-96 (96)
102 cd01841 NnaC_like NnaC (CMP-Ne 50.0 56 0.0012 26.3 6.2 52 31-85 50-102 (174)
103 TIGR00640 acid_CoA_mut_C methy 49.5 1.3E+02 0.0028 23.9 7.9 63 31-112 52-116 (132)
104 PRK14173 bifunctional 5,10-met 49.4 9.3 0.0002 34.8 1.4 40 4-44 170-210 (287)
105 TIGR01777 yfcH conserved hypot 49.3 38 0.00083 29.6 5.4 51 25-75 50-104 (292)
106 PRK08192 aspartate carbamoyltr 49.3 24 0.00051 32.9 4.1 22 19-40 213-234 (338)
107 PRK08268 3-hydroxy-acyl-CoA de 48.7 81 0.0018 31.0 8.0 22 18-40 73-94 (507)
108 PRK15182 Vi polysaccharide bio 48.6 92 0.002 29.9 8.2 70 20-97 65-137 (425)
109 cd01827 sialate_O-acetylestera 48.1 70 0.0015 26.0 6.5 49 31-82 66-116 (188)
110 cd04121 Rab40 Rab40 subfamily. 47.6 45 0.00098 27.9 5.3 48 28-85 74-121 (189)
111 cd00885 cinA Competence-damage 47.4 16 0.00036 30.3 2.5 64 8-71 27-101 (170)
112 cd01828 sialate_O-acetylestera 47.3 66 0.0014 25.8 6.2 49 31-83 47-96 (169)
113 PRK14178 bifunctional 5,10-met 46.6 9.6 0.00021 34.5 1.1 40 4-43 167-206 (279)
114 PRK15098 beta-D-glucoside gluc 46.2 21 0.00046 37.0 3.6 53 29-85 498-556 (765)
115 PRK14189 bifunctional 5,10-met 45.9 12 0.00026 34.1 1.6 39 4-43 173-212 (285)
116 TIGR02622 CDP_4_6_dhtase CDP-g 45.8 85 0.0018 28.6 7.3 58 25-82 66-127 (349)
117 PF04026 SpoVG: SpoVG; InterP 45.7 61 0.0013 23.8 5.0 41 217-260 36-76 (84)
118 PRK14169 bifunctional 5,10-met 45.1 13 0.00027 33.8 1.6 40 4-44 171-211 (282)
119 COG2085 Predicted dinucleotide 44.8 81 0.0017 27.4 6.4 49 20-85 49-97 (211)
120 COG1086 Predicted nucleoside-d 44.7 78 0.0017 31.7 7.0 104 23-152 314-433 (588)
121 PLN00198 anthocyanidin reducta 44.5 82 0.0018 28.5 7.0 57 25-81 73-130 (338)
122 PRK14193 bifunctional 5,10-met 44.0 13 0.00028 33.8 1.4 41 4-44 173-215 (284)
123 PF07685 GATase_3: CobB/CobQ-l 43.9 25 0.00054 28.7 3.1 38 28-69 3-40 (158)
124 PRK15057 UDP-glucose 6-dehydro 43.6 66 0.0014 30.5 6.3 62 19-85 60-122 (388)
125 TIGR00670 asp_carb_tr aspartat 43.6 26 0.00056 32.0 3.4 21 19-39 203-223 (301)
126 COG1035 FrhB Coenzyme F420-red 42.7 1.8E+02 0.0038 27.2 8.7 108 26-138 85-212 (332)
127 PLN03209 translocon at the inn 42.7 59 0.0013 32.6 6.0 56 25-81 152-207 (576)
128 PLN02662 cinnamyl-alcohol dehy 42.6 98 0.0021 27.5 7.1 58 23-81 67-126 (322)
129 PRK00549 competence damage-ind 42.6 28 0.00061 33.3 3.7 40 5-44 25-71 (414)
130 PRK01215 competence damage-ind 42.0 24 0.00052 31.7 2.9 39 5-43 28-73 (264)
131 COG0078 ArgF Ornithine carbamo 42.0 43 0.00094 30.7 4.5 20 19-38 208-227 (310)
132 PF00919 UPF0004: Uncharacteri 41.6 94 0.002 23.3 5.7 41 30-81 34-76 (98)
133 PRK14194 bifunctional 5,10-met 41.5 14 0.00031 33.8 1.4 40 3-43 173-213 (301)
134 TIGR03466 HpnA hopanoid-associ 41.4 75 0.0016 28.2 6.1 56 25-81 57-112 (328)
135 PLN02527 aspartate carbamoyltr 41.4 22 0.00048 32.5 2.7 22 19-40 205-226 (306)
136 PF03720 UDPG_MGDP_dh_C: UDP-g 41.3 8.7 0.00019 29.2 -0.0 27 17-43 51-77 (106)
137 PLN02214 cinnamoyl-CoA reducta 41.2 85 0.0018 28.7 6.6 55 23-81 72-126 (342)
138 PRK14184 bifunctional 5,10-met 41.0 15 0.00032 33.5 1.4 24 21-44 193-216 (286)
139 PLN02897 tetrahydrofolate dehy 41.0 16 0.00036 34.0 1.7 61 3-84 228-290 (345)
140 PRK06522 2-dehydropantoate 2-r 40.8 1.4E+02 0.003 26.5 7.7 48 21-85 56-104 (304)
141 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 40.4 57 0.0012 27.1 4.8 68 5-85 53-120 (182)
142 PLN02616 tetrahydrofolate dehy 40.0 16 0.00035 34.3 1.5 40 4-44 246-286 (364)
143 KOG2666 UDP-glucose/GDP-mannos 39.9 39 0.00085 31.4 3.9 31 15-45 61-91 (481)
144 PLN02650 dihydroflavonol-4-red 39.8 1E+02 0.0022 28.1 6.8 58 24-81 69-127 (351)
145 TIGR03289 frhB coenzyme F420 h 39.0 1.1E+02 0.0024 27.5 6.7 66 68-137 86-161 (275)
146 PRK10433 putative RNA methyltr 38.8 39 0.00085 29.6 3.7 63 15-85 53-117 (228)
147 cd01823 SEST_like SEST_like. A 38.5 1.1E+02 0.0024 26.4 6.7 25 58-82 130-154 (259)
148 cd01820 PAF_acetylesterase_lik 38.1 96 0.0021 26.2 6.0 47 32-81 89-135 (214)
149 PRK15469 ghrA bifunctional gly 37.9 79 0.0017 29.0 5.7 46 23-81 181-226 (312)
150 PRK00094 gpsA NAD(P)H-dependen 37.8 87 0.0019 28.1 6.0 50 20-85 59-109 (325)
151 PRK14171 bifunctional 5,10-met 37.7 18 0.00039 32.9 1.4 39 4-43 174-213 (288)
152 PRK14186 bifunctional 5,10-met 37.6 19 0.00042 32.9 1.6 39 4-43 173-212 (297)
153 cd02067 B12-binding B12 bindin 37.6 1.6E+02 0.0036 22.2 6.7 43 31-85 49-92 (119)
154 PRK14176 bifunctional 5,10-met 37.5 19 0.0004 32.8 1.5 40 4-44 179-219 (287)
155 TIGR03310 matur_ygfJ molybdenu 37.4 38 0.00083 27.6 3.3 51 34-84 1-51 (188)
156 PRK14175 bifunctional 5,10-met 37.4 19 0.0004 32.8 1.4 40 4-44 173-213 (286)
157 PLN02989 cinnamyl-alcohol dehy 37.3 1.4E+02 0.003 26.7 7.2 59 23-81 68-128 (325)
158 PF00071 Ras: Ras family; Int 37.0 57 0.0012 25.6 4.2 48 28-85 67-115 (162)
159 cd04131 Rnd Rnd subfamily. Th 36.8 68 0.0015 26.4 4.7 48 29-85 69-116 (178)
160 PRK14188 bifunctional 5,10-met 36.7 18 0.00039 33.1 1.2 40 3-43 172-212 (296)
161 PRK14187 bifunctional 5,10-met 36.5 22 0.00047 32.5 1.7 40 4-44 175-215 (294)
162 cd01874 Cdc42 Cdc42 subfamily. 36.4 76 0.0017 25.8 4.9 68 5-85 49-116 (175)
163 KOG1502 Flavonol reductase/cin 36.4 1.2E+02 0.0027 28.1 6.6 62 20-82 66-128 (327)
164 PRK02628 nadE NAD synthetase; 36.3 1.1E+02 0.0024 31.3 7.0 74 59-133 347-428 (679)
165 PF00448 SRP54: SRP54-type pro 36.2 77 0.0017 26.9 5.0 71 31-115 82-153 (196)
166 cd01825 SGNH_hydrolase_peri1 S 36.0 1.2E+02 0.0026 24.5 6.1 50 31-83 55-105 (189)
167 PRK00856 pyrB aspartate carbam 35.8 59 0.0013 29.8 4.5 23 19-41 200-222 (305)
168 COG0677 WecC UDP-N-acetyl-D-ma 35.6 2.5E+02 0.0055 27.0 8.6 83 19-109 72-157 (436)
169 PRK10792 bifunctional 5,10-met 35.4 23 0.00049 32.3 1.7 40 4-44 174-214 (285)
170 PRK14190 bifunctional 5,10-met 35.1 20 0.00043 32.6 1.2 40 4-44 173-213 (284)
171 PRK12726 flagellar biosynthesi 34.8 1.7E+02 0.0038 28.0 7.5 70 31-114 284-354 (407)
172 PLN02695 GDP-D-mannose-3',5'-e 34.6 1.1E+02 0.0023 28.5 6.1 113 26-141 79-202 (370)
173 PTZ00323 NAD+ synthase; Provis 34.4 1.6E+02 0.0034 26.9 7.0 83 45-132 21-111 (294)
174 cd05312 NAD_bind_1_malic_enz N 34.2 57 0.0012 29.6 4.0 69 22-109 93-165 (279)
175 PRK14183 bifunctional 5,10-met 33.8 22 0.00047 32.3 1.3 40 4-44 172-212 (281)
176 COG1058 CinA Predicted nucleot 33.4 43 0.00094 29.9 3.1 47 5-51 26-80 (255)
177 PF02540 NAD_synthase: NAD syn 33.3 69 0.0015 28.2 4.4 63 63-129 8-76 (242)
178 cd01832 SGNH_hydrolase_like_1 33.3 1.2E+02 0.0026 24.5 5.7 48 31-83 66-114 (185)
179 PF04432 FrhB_FdhB_C: Coenzyme 33.2 1.6E+02 0.0035 23.8 6.4 61 74-139 4-72 (161)
180 PRK09458 pspB phage shock prot 33.0 99 0.0021 22.3 4.3 29 247-275 35-66 (75)
181 PRK14170 bifunctional 5,10-met 32.9 32 0.00069 31.3 2.2 40 4-44 172-212 (284)
182 TIGR00745 apbA_panE 2-dehydrop 32.8 1.7E+02 0.0037 25.7 7.0 68 19-109 47-114 (293)
183 PRK13259 regulatory protein Sp 32.5 76 0.0016 23.9 3.8 36 224-260 41-76 (94)
184 TIGR01724 hmd_rel H2-forming N 32.4 4.2E+02 0.0092 24.8 10.8 21 20-40 69-89 (341)
185 PLN02986 cinnamyl-alcohol dehy 32.3 1.7E+02 0.0037 26.1 7.0 58 24-81 69-127 (322)
186 PF13778 DUF4174: Domain of un 32.0 1.5E+02 0.0033 22.9 5.7 24 119-142 67-90 (118)
187 PRK14181 bifunctional 5,10-met 31.9 33 0.00072 31.2 2.2 41 4-44 168-212 (287)
188 PRK11889 flhF flagellar biosyn 31.7 2.1E+02 0.0045 27.7 7.5 66 32-114 320-389 (436)
189 PRK07680 late competence prote 31.6 1.2E+02 0.0027 26.8 5.8 50 20-85 50-100 (273)
190 PRK07634 pyrroline-5-carboxyla 31.6 1.3E+02 0.0029 25.7 6.0 17 23-39 57-73 (245)
191 cd01079 NAD_bind_m-THF_DH NAD 31.6 30 0.00066 29.7 1.7 19 26-44 120-138 (197)
192 PRK14174 bifunctional 5,10-met 31.4 24 0.00052 32.2 1.2 40 4-43 174-217 (295)
193 PRK14619 NAD(P)H-dependent gly 31.2 1.3E+02 0.0028 27.2 6.0 46 23-84 38-85 (308)
194 PF03949 Malic_M: Malic enzyme 31.2 47 0.001 29.7 2.9 48 24-85 96-145 (255)
195 PRK10217 dTDP-glucose 4,6-dehy 30.9 2.2E+02 0.0049 25.7 7.6 112 25-140 65-194 (355)
196 TIGR03589 PseB UDP-N-acetylglu 30.8 1.3E+02 0.0028 27.3 5.9 56 25-81 67-124 (324)
197 PLN02583 cinnamoyl-CoA reducta 30.8 1.8E+02 0.0038 25.9 6.8 58 24-81 70-127 (297)
198 PRK14167 bifunctional 5,10-met 30.7 37 0.00079 31.1 2.2 41 4-44 172-216 (297)
199 cd01839 SGNH_arylesterase_like 30.6 1.3E+02 0.0028 25.0 5.6 50 31-83 78-134 (208)
200 PRK14723 flhF flagellar biosyn 30.3 1.6E+02 0.0036 30.6 7.0 72 29-114 260-335 (767)
201 PRK14166 bifunctional 5,10-met 29.8 38 0.00082 30.8 2.2 40 4-44 172-212 (282)
202 PRK14182 bifunctional 5,10-met 29.7 39 0.00085 30.7 2.2 39 4-43 172-211 (282)
203 PLN03080 Probable beta-xylosid 29.5 55 0.0012 34.1 3.5 56 28-85 483-543 (779)
204 PRK03673 hypothetical protein; 29.5 58 0.0013 31.1 3.4 40 5-44 26-72 (396)
205 cd00229 SGNH_hydrolase SGNH_hy 29.3 1.7E+02 0.0038 22.3 5.9 56 27-83 60-115 (187)
206 cd04506 SGNH_hydrolase_YpmR_li 29.1 1.2E+02 0.0026 25.1 5.1 52 30-81 66-128 (204)
207 TIGR00959 ffh signal recogniti 29.0 2.8E+02 0.0061 26.7 8.0 88 31-140 181-277 (428)
208 PRK14168 bifunctional 5,10-met 29.0 39 0.00084 30.9 2.1 41 4-44 176-220 (297)
209 cd04133 Rop_like Rop subfamily 29.0 1.2E+02 0.0026 25.0 4.9 48 29-85 69-116 (176)
210 PRK09325 coenzyme F420-reducin 28.7 1.6E+02 0.0035 26.4 6.1 63 71-137 91-163 (282)
211 PRK14620 NAD(P)H-dependent gly 28.6 1.4E+02 0.0029 27.2 5.7 51 19-85 57-110 (326)
212 PLN02342 ornithine carbamoyltr 28.6 75 0.0016 29.8 3.9 22 19-40 246-267 (348)
213 PF04670 Gtr1_RagA: Gtr1/RagA 28.6 1.2E+02 0.0025 26.7 5.0 73 6-85 49-122 (232)
214 PRK14191 bifunctional 5,10-met 28.5 24 0.00053 32.1 0.7 40 4-44 172-212 (285)
215 PRK10084 dTDP-glucose 4,6 dehy 28.4 1.9E+02 0.004 26.2 6.6 112 25-140 64-201 (352)
216 PRK00961 H(2)-dependent methyl 28.2 93 0.002 28.4 4.2 42 18-70 127-168 (342)
217 PLN02516 methylenetetrahydrofo 28.1 45 0.00097 30.6 2.3 39 4-43 182-221 (299)
218 cd01821 Rhamnogalacturan_acety 28.0 2.3E+02 0.0049 23.3 6.6 86 31-134 64-154 (198)
219 PRK14177 bifunctional 5,10-met 28.0 44 0.00095 30.4 2.2 39 4-43 174-213 (284)
220 cd00877 Ran Ran (Ras-related n 27.9 1.3E+02 0.0028 24.1 4.9 47 29-85 69-115 (166)
221 KOG1504 Ornithine carbamoyltra 27.8 82 0.0018 28.4 3.8 25 15-39 241-265 (346)
222 cd02071 MM_CoA_mut_B12_BD meth 27.8 1.9E+02 0.0041 22.2 5.7 62 31-112 49-113 (122)
223 PRK14172 bifunctional 5,10-met 27.2 46 0.001 30.1 2.2 40 4-44 173-213 (278)
224 cd00953 KDG_aldolase KDG (2-ke 27.0 2.7E+02 0.0058 24.9 7.2 75 111-202 16-90 (279)
225 PRK06731 flhF flagellar biosyn 27.0 1.9E+02 0.0041 26.0 6.2 67 32-115 154-224 (270)
226 cd01873 RhoBTB RhoBTB subfamil 26.7 1.3E+02 0.0028 25.2 4.9 66 5-85 66-131 (195)
227 COG0190 FolD 5,10-methylene-te 26.3 39 0.00085 30.7 1.6 40 4-44 171-211 (283)
228 PRK10416 signal recognition pa 26.0 2.5E+02 0.0054 25.8 6.9 47 30-81 194-241 (318)
229 PF02423 OCD_Mu_crystall: Orni 25.7 49 0.0011 30.2 2.2 24 18-41 178-201 (313)
230 PRK03670 competence damage-ind 25.6 88 0.0019 27.8 3.7 46 5-50 25-79 (252)
231 PRK14180 bifunctional 5,10-met 25.4 52 0.0011 29.9 2.2 40 4-44 173-213 (282)
232 cd04124 RabL2 RabL2 subfamily. 25.3 1.9E+02 0.0042 22.8 5.5 49 27-85 67-115 (161)
233 PF05582 Peptidase_U57: YabG p 25.3 1.2E+02 0.0027 27.5 4.6 50 32-81 154-207 (287)
234 smart00176 RAN Ran (Ras-relate 25.3 1.5E+02 0.0033 25.0 5.0 67 5-85 44-110 (200)
235 PRK00779 ornithine carbamoyltr 25.2 1.2E+02 0.0026 27.7 4.6 22 19-40 204-225 (304)
236 PRK14185 bifunctional 5,10-met 25.1 52 0.0011 30.1 2.2 24 21-44 193-216 (293)
237 COG1419 FlhF Flagellar GTP-bin 25.1 3E+02 0.0065 26.4 7.3 71 28-114 277-350 (407)
238 CHL00194 ycf39 Ycf39; Provisio 25.0 1.5E+02 0.0031 26.7 5.2 54 24-81 56-109 (317)
239 cd03334 Fab1_TCP TCP-1 like do 24.5 5E+02 0.011 23.0 9.9 88 28-127 82-173 (261)
240 PRK11880 pyrroline-5-carboxyla 24.5 1.8E+02 0.0039 25.4 5.5 19 22-40 52-70 (267)
241 PRK13814 pyrB aspartate carbam 24.5 52 0.0011 30.2 2.1 21 19-39 204-224 (310)
242 PRK12480 D-lactate dehydrogena 24.3 1.7E+02 0.0037 27.0 5.5 19 22-40 188-206 (330)
243 cd00553 NAD_synthase NAD+ synt 24.3 2.5E+02 0.0055 24.4 6.4 66 61-130 11-82 (248)
244 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 24.2 1.6E+02 0.0034 25.7 5.0 48 29-85 81-128 (232)
245 PRK12723 flagellar biosynthesi 24.1 3.3E+02 0.0072 25.9 7.5 72 29-114 251-324 (388)
246 KOG0652 26S proteasome regulat 24.0 1.2E+02 0.0025 27.8 4.1 65 61-129 295-362 (424)
247 COG1929 Glycerate kinase [Carb 23.9 60 0.0013 30.6 2.3 43 23-73 275-317 (378)
248 cd04101 RabL4 RabL4 (Rab-like4 23.9 2.1E+02 0.0047 22.2 5.5 50 26-85 69-118 (164)
249 PRK12562 ornithine carbamoyltr 23.5 55 0.0012 30.4 2.1 22 19-40 212-233 (334)
250 PF09370 TIM-br_sig_trns: TIM- 23.4 1.6E+02 0.0036 26.5 4.9 69 30-99 168-238 (268)
251 PRK06407 ornithine cyclodeamin 23.3 65 0.0014 29.3 2.5 24 19-42 169-192 (301)
252 TIGR01214 rmlD dTDP-4-dehydror 23.3 2.4E+02 0.0053 24.4 6.2 55 25-81 41-99 (287)
253 PTZ00317 NADP-dependent malic 23.2 1.9E+02 0.004 29.0 5.7 73 23-114 370-447 (559)
254 COG0773 MurC UDP-N-acetylmuram 23.2 2.2E+02 0.0049 27.7 6.1 77 29-108 63-141 (459)
255 cd02069 methionine_synthase_B1 23.1 1.7E+02 0.0036 25.3 4.9 31 55-85 150-180 (213)
256 PF02698 DUF218: DUF218 domain 23.1 1.3E+02 0.0027 23.9 3.9 37 90-127 58-98 (155)
257 TIGR01723 hmd_TIGR 5,10-methen 23.0 1.2E+02 0.0026 27.8 4.0 42 18-70 125-166 (340)
258 PLN02427 UDP-apiose/xylose syn 23.0 1.8E+02 0.004 26.9 5.5 56 25-82 79-136 (386)
259 PLN02996 fatty acyl-CoA reduct 23.0 2.5E+02 0.0055 27.3 6.7 45 26-71 106-150 (491)
260 cd01822 Lysophospholipase_L1_l 23.0 2.3E+02 0.005 22.4 5.6 44 32-81 64-108 (177)
261 smart00175 RAB Rab subfamily o 22.9 2.3E+02 0.0051 21.9 5.5 50 26-85 66-116 (164)
262 PLN03129 NADP-dependent malic 22.9 2E+02 0.0042 29.0 5.8 73 23-114 390-467 (581)
263 cd00758 MoCF_BD MoCF_BD: molyb 22.8 1.3E+02 0.0028 23.5 3.9 19 26-44 52-70 (133)
264 TIGR00177 molyb_syn molybdenum 22.8 1.2E+02 0.0026 24.1 3.7 17 28-44 62-78 (144)
265 PF01370 Epimerase: NAD depend 22.7 56 0.0012 27.4 1.9 56 25-81 56-115 (236)
266 PRK14327 (dimethylallyl)adenos 22.7 2E+02 0.0043 28.4 5.9 42 30-81 101-145 (509)
267 PLN02166 dTDP-glucose 4,6-dehy 22.6 2.7E+02 0.0058 26.7 6.7 54 26-81 178-233 (436)
268 cd01855 YqeH YqeH. YqeH is an 22.3 2.8E+02 0.0061 22.7 6.1 18 26-43 28-45 (190)
269 PRK14192 bifunctional 5,10-met 22.2 52 0.0011 29.8 1.6 39 4-43 174-213 (283)
270 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 21.9 2E+02 0.0042 24.9 5.1 68 5-85 49-116 (222)
271 PLN03071 GTP-binding nuclear p 21.8 1.9E+02 0.004 24.7 5.0 47 29-85 82-128 (219)
272 cd02068 radical_SAM_B12_BD B12 21.8 2.6E+02 0.0056 21.4 5.4 39 31-82 38-76 (127)
273 PF04123 DUF373: Domain of unk 21.7 44 0.00094 31.3 1.0 114 15-141 49-167 (344)
274 PRK00768 nadE NAD synthetase; 21.7 3.4E+02 0.0074 24.4 6.7 80 46-128 14-102 (268)
275 PRK06249 2-dehydropantoate 2-r 21.6 3.9E+02 0.0085 24.1 7.3 70 20-112 61-131 (313)
276 cd04120 Rab12 Rab12 subfamily. 21.6 2E+02 0.0043 24.3 5.0 48 28-85 68-116 (202)
277 PF08899 DUF1844: Domain of un 21.5 1.2E+02 0.0025 21.9 2.9 19 246-264 53-71 (74)
278 PRK02102 ornithine carbamoyltr 21.5 63 0.0014 30.0 2.0 21 19-39 211-231 (331)
279 PF09695 YtfJ_HI0045: Bacteria 21.4 1.7E+02 0.0038 24.2 4.4 30 229-258 126-155 (160)
280 PRK06823 ornithine cyclodeamin 21.3 79 0.0017 29.0 2.6 23 19-41 179-201 (315)
281 TIGR03316 ygeW probable carbam 21.3 65 0.0014 30.3 2.1 21 19-39 232-252 (357)
282 cd01834 SGNH_hydrolase_like_2 21.2 1.9E+02 0.0041 23.2 4.7 49 31-82 60-112 (191)
283 COG0565 LasT rRNA methylase [T 21.1 74 0.0016 28.2 2.3 29 16-44 56-84 (242)
284 KOG1683 Hydroxyacyl-CoA dehydr 21.0 1.6E+02 0.0034 27.9 4.5 100 20-141 58-172 (380)
285 PRK04284 ornithine carbamoyltr 21.0 65 0.0014 29.9 2.0 21 20-40 212-232 (332)
286 PRK08818 prephenate dehydrogen 21.0 1.8E+02 0.004 27.4 5.0 16 25-40 44-59 (370)
287 PLN02688 pyrroline-5-carboxyla 20.9 2.3E+02 0.005 24.7 5.5 17 159-175 137-153 (266)
288 TIGR02853 spore_dpaA dipicolin 20.9 3.6E+02 0.0078 24.3 6.8 23 17-39 39-61 (287)
289 PRK08655 prephenate dehydrogen 20.7 4.8E+02 0.01 25.1 8.0 20 21-40 47-66 (437)
290 PRK01713 ornithine carbamoyltr 20.7 67 0.0015 29.8 2.0 21 19-39 212-232 (334)
291 PRK03515 ornithine carbamoyltr 20.6 68 0.0015 29.8 2.1 22 19-40 212-233 (336)
292 PRK07589 ornithine cyclodeamin 20.6 78 0.0017 29.6 2.5 23 19-41 180-202 (346)
293 PRK07574 formate dehydrogenase 20.6 1.9E+02 0.0042 27.4 5.1 47 22-81 238-284 (385)
294 PRK11891 aspartate carbamoyltr 20.6 68 0.0015 31.0 2.1 23 19-41 295-317 (429)
295 PF02310 B12-binding: B12 bind 20.4 3.7E+02 0.008 20.0 7.1 70 63-140 19-90 (121)
296 PRK06928 pyrroline-5-carboxyla 20.3 2.4E+02 0.0052 25.1 5.5 48 22-85 54-102 (277)
297 cd04501 SGNH_hydrolase_like_4 20.1 3.6E+02 0.0077 21.6 6.2 51 31-85 58-108 (183)
298 TIGR03471 HpnJ hopanoid biosyn 20.1 2.8E+02 0.006 26.8 6.3 44 29-85 65-108 (472)
299 PRK04523 N-acetylornithine car 20.0 71 0.0015 29.7 2.0 22 19-40 231-252 (335)
300 PF02492 cobW: CobW/HypB/UreG, 20.0 1.8E+02 0.0039 23.9 4.4 41 27-78 137-177 (178)
No 1
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=100.00 E-value=2.4e-65 Score=465.69 Aligned_cols=269 Identities=56% Similarity=0.900 Sum_probs=244.9
Q ss_pred cccccccCCcccccceec-C--CCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEec
Q 023853 5 LAQNKFDVDSRAVRGFLG-Q--QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 81 (276)
Q Consensus 5 ~~~~~~d~~~~~~~~i~~-~--~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvt 81 (276)
.+|+++|...+ ..+.. + +|+.++++|||+||+|+|.|++||++|++++..|++|++++++.|++++|++++|++|
T Consensus 39 ~a~DL~~~~~~--~~i~~~~~~~~~~~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvs 116 (312)
T TIGR01772 39 VAADLSHIPTA--ASVKGFSGEEGLENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVIT 116 (312)
T ss_pred EEchhhcCCcC--ceEEEecCCCchHHHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEec
Confidence 57899996632 24554 2 2344599999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEeechHHHHHHHHHHHhCCCCCCceeeEEeecCCCeeeecccCCCCCCCCChh
Q 023853 82 NPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPT 161 (276)
Q Consensus 82 NP~d~~~~v~t~~~~~~~~~~~~rviG~t~lds~R~~~~la~~l~v~~~~v~~~ViG~hgg~~~vp~~s~~~~~~~~~~~ 161 (276)
||+|.|++++||++++.+|||++||||+|.|||+|||++||+++|+++++|++|||||||+++++|+||+++....++++
T Consensus 117 NPvDv~~~i~t~~~~~~sg~p~~rViG~g~LDsaR~r~~la~~l~v~~~~v~~~ViGeHg~~s~vp~~S~~~~~~~~~~~ 196 (312)
T TIGR01772 117 NPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELKGKDPMEVNVPVIGGHSGETIIPLISQCPGKVLFTED 196 (312)
T ss_pred CchhhHHHHHHHHHHHhcCCChHHEEeeecchHHHHHHHHHHHhCCCHHHeEEEEEEecCCCccccccccccccCCCCHH
Confidence 99999999999999999999999999997799999999999999999999999999999866999999999864446666
Q ss_pred HHHHHHHHHhcCccceeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEeeeecCCC-CCccEEEEeEEEcCCceE
Q 023853 162 EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTV-TELPFFASKVRLGRAGIE 240 (276)
Q Consensus 162 ~~~~i~~~v~~~~~~ii~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s~~~~~y-~~~~~~s~Pv~ig~~Gv~ 240 (276)
++++|.++|+++|++|++.|.|||+|+||+|+++++++++|++++.|++.++|+++++|+| .+++|||+||+||++|++
T Consensus 197 ~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia~a~~~iv~ail~~~~d~~~v~~~s~~~g~yg~~~v~~s~P~~ig~~Gv~ 276 (312)
T TIGR01772 197 QLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRGLKGEEGVVECAYVESDGVTEATFFATPLLLGKNGVE 276 (312)
T ss_pred HHHHHHHHHHHHHHHHHhCccCCCChhHHHHHHHHHHHHHHHHhhCCCccEEEEEEEccCCCcCceEEEEEEEEcCCeeE
Confidence 7899999999999999998668899999999999999999998655788999988889888 478999999999999999
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023853 241 EIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 275 (276)
Q Consensus 241 ~i~~~~~L~~~E~~~l~~sa~~i~~~~~~~~~~~~ 275 (276)
+++++++|+++|+++|++|++.|++.++++++|+.
T Consensus 277 ~i~~~~~L~~~E~~~l~~S~~~i~~~~~~g~~~~~ 311 (312)
T TIGR01772 277 KRLGIGKLSSFEEKMLNGALPELKKNIKKGEEFVA 311 (312)
T ss_pred EEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99987579999999999999999999999999975
No 2
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.1e-65 Score=465.36 Aligned_cols=270 Identities=65% Similarity=1.043 Sum_probs=243.6
Q ss_pred cccccccCCcc-cccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCC
Q 023853 5 LAQNKFDVDSR-AVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 83 (276)
Q Consensus 5 ~~~~~~d~~~~-~~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP 83 (276)
.+|+|+|++.+ .++.++.++|+.++++|||+||+|+|.|++|||+|++++..|++|++++++.|++++|++|+|++|||
T Consensus 40 ~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP 119 (310)
T cd01337 40 VAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP 119 (310)
T ss_pred eehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 58999999753 55543344455469999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHcCCCCCCCEEEEeechHHHHHHHHHHHhCCCCCCceeeEEeecCCCeeeecccCCCCCCCCChhHH
Q 023853 84 VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEI 163 (276)
Q Consensus 84 ~d~~~~v~t~~~~~~~~~~~~rviG~t~lds~R~~~~la~~l~v~~~~v~~~ViG~hgg~~~vp~~s~~~~~~~~~~~~~ 163 (276)
+|.|+++++|++++.++||++||||+|.|||+||++++|+++|+++++|+++|||||+|+++||+||++.+...++++++
T Consensus 120 vDv~~~i~t~~~~~~s~~p~~rviG~~~LDs~R~~~~la~~l~v~~~~V~~~v~GeHsGds~vp~~S~~~~~~~~~~~~~ 199 (310)
T cd01337 120 VNSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAELLGLDPAKVNVPVIGGHSGVTILPLLSQCQPPFTFDQEEI 199 (310)
T ss_pred hhhHHHHHHHHHHHhcCCCHHHEEeeechHHHHHHHHHHHHhCcCHHHEEEEEEecCCCCceecccccccccccCCHHHH
Confidence 99999999999999999999999999889999999999999999999999999999944899999999987555666668
Q ss_pred HHHHHHHhcCccceeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEeeeecCCCCCccEEEEeEEEcCCceEEEc
Q 023853 164 DYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIY 243 (276)
Q Consensus 164 ~~i~~~v~~~~~~ii~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s~~~~~y~~~~~~s~Pv~ig~~Gv~~i~ 243 (276)
++|.++|+++|++|++.|.|||+|+||+|.++++++++|+++.++++.+++|+++.++-.+++|||+||++|++|+++++
T Consensus 200 ~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a~a~~~iv~aIl~~~~~~~~~~~~s~~~~~g~~~v~~s~P~~ig~~Gv~~i~ 279 (310)
T cd01337 200 EALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLLRGLKGEKGVIECAYVESDVTEAPFFATPVELGKNGVEKNL 279 (310)
T ss_pred HHHHHHHHHHHHHHHhCccCCCCcchhHHHHHHHHHHHHHHhcCCCcceEEEEEEeccCCCceEEEEEEEEeCCeEEEEe
Confidence 99999999999999998767899999999999999999998766677888888666542368999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023853 244 SLGPLNEYERAGLEKAKKELAGSIQKGVSFV 274 (276)
Q Consensus 244 ~~~~L~~~E~~~l~~sa~~i~~~~~~~~~~~ 274 (276)
++++|+++|+++|++|++.|++.++++++|+
T Consensus 280 ~l~~L~~~E~~~l~~S~~~i~~~~~~g~~~~ 310 (310)
T cd01337 280 GLGKLNDYEKKLLEAALPELKKNIEKGVDFV 310 (310)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 9734999999999999999999999999874
No 3
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=3.5e-64 Score=453.43 Aligned_cols=259 Identities=37% Similarity=0.558 Sum_probs=239.5
Q ss_pred cccccccCCcccccceecC--CCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecC
Q 023853 5 LAQNKFDVDSRAVRGFLGQ--QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 82 (276)
Q Consensus 5 ~~~~~~d~~~~~~~~i~~~--~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtN 82 (276)
-||++.|++.+.......+ +||+ +++|||+|+|+||.||||||+|+||+..|++|++++++++++++||++++|+||
T Consensus 41 ~a~DL~~~~~~~~~~~~i~~~~~y~-~~~~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtN 119 (313)
T COG0039 41 VALDLSHAAAPLGSDVKITGDGDYE-DLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTN 119 (313)
T ss_pred hhcchhhcchhccCceEEecCCChh-hhcCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecC
Confidence 4799999999987655554 4586 899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEE-eechHHHHHHHHHHHhCCCCCCceeeEEeecCCCeeeecccCCCCCC-----
Q 023853 83 PVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----- 156 (276)
Q Consensus 83 P~d~~~~v~t~~~~~~~~~~~~rviG~-t~lds~R~~~~la~~l~v~~~~v~~~ViG~hgg~~~vp~~s~~~~~~----- 156 (276)
|+| ++||++|+.+|+|++||||+ |.|||+||+++||+++|+++++|++||+|||| +++||+||++++.+
T Consensus 120 PvD----~~ty~~~k~sg~p~~rvig~gt~LDsaR~~~~lae~~~v~~~~V~~~ViGeHG-dt~vp~~S~a~v~G~pl~~ 194 (313)
T COG0039 120 PVD----ILTYIAMKFSGFPKNRVIGSGTVLDSARFRTFLAEKLGVSPKDVHAYVIGEHG-DTMVPLWSQATVGGKPLEE 194 (313)
T ss_pred cHH----HHHHHHHHhcCCCccceecccchHHHHHHHHHHHHHhCCChhHceeeEeccCC-CceEEeeeeeeECCEEHHH
Confidence 999 99999999999999999999 99999999999999999999999999999996 89999999998765
Q ss_pred C---CChhHHHHHHHHHhcCccceeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEee-eecCCC-CCccEEEEe
Q 023853 157 S---LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASK 231 (276)
Q Consensus 157 ~---~~~~~~~~i~~~v~~~~~~ii~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s-~~~~~y-~~~~~~s~P 231 (276)
. .+++++++|.++||++|++|+++| |.| +.||+|.++++++++|+++ +++++|++ +++|+| .+++|||+|
T Consensus 195 ~~~~~~~~~~~~i~~~v~~~g~eII~~k-G~~-t~~~~A~a~a~~~~ail~d---~~~vl~~s~~l~G~yg~~dv~~gvP 269 (313)
T COG0039 195 LLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGPAAALARMVEAILRD---EKRVLPVSVYLDGEYGVEDVYFGVP 269 (313)
T ss_pred HhhcccHhHHHHHHHHHHhhHHHHHHcc-Ccc-chhhHHHHHHHHHHHHHcC---CCceEEEEEeecCccCcCCeEEEee
Confidence 1 234567899999999999999988 544 9999999999999999995 78899997 789999 689999999
Q ss_pred EEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023853 232 VRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 275 (276)
Q Consensus 232 v~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~i~~~~~~~~~~~~ 275 (276)
+++|++|+++++++ +|+++|+++|++|++.||+.++.+.++++
T Consensus 270 ~~lg~~Gv~~iie~-~l~~~E~~~l~~s~~~lk~~i~~~~~~~~ 312 (313)
T COG0039 270 AVLGKNGVEEILEL-LLSDDEQEKLDKSAEELKKNIELVKELVL 312 (313)
T ss_pred EEEcCCCcEEEecC-CCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999998 89999999999999999999999988865
No 4
>PLN00135 malate dehydrogenase
Probab=100.00 E-value=4.8e-62 Score=443.15 Aligned_cols=261 Identities=22% Similarity=0.337 Sum_probs=238.8
Q ss_pred cccccccCCcccccceecCCC-HHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCcEEEEecC
Q 023853 5 LAQNKFDVDSRAVRGFLGQQQ-LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISN 82 (276)
Q Consensus 5 ~~~~~~d~~~~~~~~i~~~~d-~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~~~vivvtN 82 (276)
.+|+++|+++|++..+..++| | ++++||||||||+|.|++||++|.+++..|++|++++++.|+++ +|++++|++||
T Consensus 31 ~~~Dl~da~~~~~~~i~~~~~~y-~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~~~i~~~~~p~aivivvsN 109 (309)
T PLN00135 31 VKMELIDAAFPLLKGVVATTDVV-EACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVAN 109 (309)
T ss_pred HHHHHHhhhHHhcCCcEecCCHH-HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 589999999898887877677 6 48999999999999999999999999999999999999999996 89999999999
Q ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEE-eechHHHHHHHHHHHhCCCCCCc-eeeEEeecCCCeeeecccCCCC----CC
Q 023853 83 PVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREV-DVPVVGGHAGVTILPLLSQVKP----SC 156 (276)
Q Consensus 83 P~d~~~~v~t~~~~~~~~~~~~rviG~-t~lds~R~~~~la~~l~v~~~~v-~~~ViG~hgg~~~vp~~s~~~~----~~ 156 (276)
|+| ++|+++++.+|+|++|+||+ |.|||+|||++||+++|+++++| ++||||||| ++++|+||++++ ++
T Consensus 110 PvD----v~t~~~~~~sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeHG-~s~v~~~S~a~v~~~~~g 184 (309)
T PLN00135 110 PAN----TNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHS-STQYPDVNHATVKTPSGE 184 (309)
T ss_pred cHH----HHHHHHHHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcCC-CceeeccccceEecCCCC
Confidence 999 89999999999999999999 99999999999999999999999 699999997 699999999988 43
Q ss_pred -----CCChhH--HHHHHHHHhcCccceeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEee-eecCCCC--Ccc
Q 023853 157 -----SLTPTE--IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT--ELP 226 (276)
Q Consensus 157 -----~~~~~~--~~~i~~~v~~~~~~ii~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s-~~~~~y~--~~~ 226 (276)
.+++++ +++|.++++++|++|++.+ ||+|+||+|.++++++++|+++. +++.++|+| +++|+|+ +++
T Consensus 185 ~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~--kg~t~~~ia~a~~~iv~ai~~~~-~~~~v~~vsv~~~g~YGi~~~v 261 (309)
T PLN00135 185 KPVRELVADDAWLNGEFITTVQQRGAAIIKAR--KLSSALSAASSACDHIRDWVLGT-PEGTWVSMGVYSDGSYGVPPGL 261 (309)
T ss_pred cCHHHHhCchhhHHHHHHHHHHHHHHHHHHcc--CccHHHHHHHHHHHHHHHHHhCC-cCCeEEEEEEEecCccCCcCCe
Confidence 133434 5889999999999999963 58999999999999999999843 257899998 6788994 789
Q ss_pred EEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023853 227 FFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 275 (276)
Q Consensus 227 ~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~i~~~~~~~~~~~~ 275 (276)
+||+||++|++|+++++++ +|+++|+++|++|++.|+++.+++++.|+
T Consensus 262 ~~s~P~vlg~~gve~v~~l-~L~~~E~~~l~~S~~~lk~~~~~~~~~~~ 309 (309)
T PLN00135 262 IYSFPVTCEKGEWSIVQGL-SIDEFSRKKMDATAKELKEEKELAYSCLS 309 (309)
T ss_pred EEEEEEEEECCEEEEecCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998 99999999999999999999999999875
No 5
>PLN00106 malate dehydrogenase
Probab=100.00 E-value=3e-61 Score=440.39 Aligned_cols=265 Identities=74% Similarity=1.149 Sum_probs=244.4
Q ss_pred ccccccccCCcc-cccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecC
Q 023853 4 PLAQNKFDVDSR-AVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 82 (276)
Q Consensus 4 ~~~~~~~d~~~~-~~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtN 82 (276)
..+|+++|++.+ .++.++.++|+.++++|||+||+++|.|++||++|++++..|+++++++++.+++++|+++++++||
T Consensus 57 g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSN 136 (323)
T PLN00106 57 GVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISN 136 (323)
T ss_pred eeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 468999998886 5666667788888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEeechHHHHHHHHHHHhCCCCCCceeeEEeecCCCeeeecccCCCCCCCCChhH
Q 023853 83 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTE 162 (276)
Q Consensus 83 P~d~~~~v~t~~~~~~~~~~~~rviG~t~lds~R~~~~la~~l~v~~~~v~~~ViG~hgg~~~vp~~s~~~~~~~~~~~~ 162 (276)
|+|.++++++|++++.+++||+||||++.||++||++++|+++|+++++|+++|+|||||+++||+||++.+...+++++
T Consensus 137 PvD~~~~i~t~~~~~~s~~p~~~viG~~~LDs~Rl~~~lA~~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~ 216 (323)
T PLN00106 137 PVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEKKGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEE 216 (323)
T ss_pred CccccHHHHHHHHHHcCCCCcceEEEEecchHHHHHHHHHHHhCCChhheEEEEEEeCCCccEeeehhcceecccCCHHH
Confidence 99999999999999999999999999977999999999999999999999999999998789999999997754466667
Q ss_pred HHHHHHHHhcCccceeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEeeeecCCCCCccEEEEeEEEcCCceEEE
Q 023853 163 IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEI 242 (276)
Q Consensus 163 ~~~i~~~v~~~~~~ii~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s~~~~~y~~~~~~s~Pv~ig~~Gv~~i 242 (276)
+++|.++++++|++|+++|.|||+|+||+|.++++++++|+++++|++.++|||+++++|.+++|||+||+||++|++++
T Consensus 217 ~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~a~a~~~ii~ail~~~~~~~~v~~~s~~~~~~~~~v~~s~P~~ig~~Gv~~i 296 (323)
T PLN00106 217 IEALTKRIQNGGTEVVEAKAGAGSATLSMAYAAARFADACLRGLNGEADVVECSYVQSEVTELPFFASKVRLGRNGVEEV 296 (323)
T ss_pred HHHHHHHHHHHHHHHHhCccCCCCchHHHHHHHHHHHHHHHhccCCCceEEEEEEECcccCCceEEEEEEEEcCCeeEEE
Confidence 99999999999999999765789999999999999999999987778889999987777643499999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHH
Q 023853 243 YSLGPLNEYERAGLEKAKKELAGSIQ 268 (276)
Q Consensus 243 ~~~~~L~~~E~~~l~~sa~~i~~~~~ 268 (276)
+++++|+++|+++|++|++.|++.++
T Consensus 297 ~~~~~L~~~E~~~l~~S~~~i~~~~~ 322 (323)
T PLN00106 297 LGLGPLSEYEQKGLEALKPELKASIE 322 (323)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99768999999999999999998775
No 6
>PRK05086 malate dehydrogenase; Provisional
Probab=100.00 E-value=4.9e-60 Score=432.12 Aligned_cols=268 Identities=54% Similarity=0.839 Sum_probs=240.4
Q ss_pred ccccccCCcccccceec--CCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCC
Q 023853 6 AQNKFDVDSRAVRGFLG--QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 83 (276)
Q Consensus 6 ~~~~~d~~~~~~~~i~~--~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP 83 (276)
+|+++|. +....+.+ .+|+.++++|+|+||+++|.++++|++|.+++..|+++++++++.|++++|+++++++|||
T Consensus 43 alDl~~~--~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP 120 (312)
T PRK05086 43 AVDLSHI--PTAVKIKGFSGEDPTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120 (312)
T ss_pred ehhhhcC--CCCceEEEeCCCCHHHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 3666663 22233444 5676569999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHcCCCCCCCEEEEeechHHHHHHHHHHHhCCCCCCceeeEEeecCCCeeeecccCCCCCCCCChhHH
Q 023853 84 VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEI 163 (276)
Q Consensus 84 ~d~~~~v~t~~~~~~~~~~~~rviG~t~lds~R~~~~la~~l~v~~~~v~~~ViG~hgg~~~vp~~s~~~~~~~~~~~~~ 163 (276)
+|.|++++++.+++.+|+|++||||+|.|||+||++++|+++|+++++|+++||||||++++||+||++ ....++++++
T Consensus 121 ~D~~t~~~~~~~~~~sg~p~~rvig~~~Lds~R~~~~ia~~l~~~~~~v~~~v~GeHg~~s~~p~~S~~-~g~~l~~~~~ 199 (312)
T PRK05086 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEV 199 (312)
T ss_pred hHHHHHHHHHHHHHhcCCCHHHEEeeecHHHHHHHHHHHHHhCCChhheEEEEEEecCCCceecccccc-CCccCCHHHH
Confidence 998888887778899999999999997799999999999999999999999999999877999999999 3334667779
Q ss_pred HHHHHHHhcCccceeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEeeeecCCCCCccEEEEeEEEcCCceEEEc
Q 023853 164 DYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIY 243 (276)
Q Consensus 164 ~~i~~~v~~~~~~ii~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s~~~~~y~~~~~~s~Pv~ig~~Gv~~i~ 243 (276)
++|.++++++|++|++.|.|||+|+||+|.++++++++|++++.|++.++|+++++++-.+++|||+||+||++|+++++
T Consensus 200 ~~i~~~v~~~g~~ii~~k~~~g~t~~~~a~a~~~~v~ai~~~~~~~~~v~~~~~~~~~g~~~v~~s~P~~ig~~Gv~~i~ 279 (312)
T PRK05086 200 ADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGKYARFFAQPVLLGKNGVEERL 279 (312)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHHhcCCCCCcEEEEEEEeccCCcceEEEEEEEEcCCeeEEEc
Confidence 99999999999999998767799999999999999999998877788899988777652357999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhC
Q 023853 244 SLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 276 (276)
Q Consensus 244 ~~~~L~~~E~~~l~~sa~~i~~~~~~~~~~~~~ 276 (276)
++++|+++|+++|++|++.|++.++++++|++|
T Consensus 280 ~~~~L~~~E~~~l~~s~~~i~~~~~~g~~~~~~ 312 (312)
T PRK05086 280 PIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 976899999999999999999999999999876
No 7
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=100.00 E-value=1.7e-60 Score=436.01 Aligned_cols=255 Identities=25% Similarity=0.347 Sum_probs=229.8
Q ss_pred cccccccCCcccccceec-CCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CcEEEEecC
Q 023853 5 LAQNKFDVDSRAVRGFLG-QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISN 82 (276)
Q Consensus 5 ~~~~~~d~~~~~~~~i~~-~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~~~vivvtN 82 (276)
.+|+++|++.|.++.+.. ++||+ +++|||+||||+|.|+||||+|++++..|++|++++++.|++++| +++++++||
T Consensus 52 ~a~Dl~~~~~~~~~~~~i~~~~~~-~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN 130 (323)
T TIGR01759 52 VAMELEDCAFPLLAGVVATTDPEE-AFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGN 130 (323)
T ss_pred HHHHHhhccccccCCcEEecChHH-HhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 589999999888776555 45664 899999999999999999999999999999999999999999998 999999999
Q ss_pred CCCCcHHHHHHHHHHcC-CCCCCCEEEEeechHHHHHHHHHHHhCCCCCCce-eeEEeecCCCeeeecccCCCCCC----
Q 023853 83 PVNSTVPIAAEVFKKVG-TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSC---- 156 (276)
Q Consensus 83 P~d~~~~v~t~~~~~~~-~~~~~rviG~t~lds~R~~~~la~~l~v~~~~v~-~~ViG~hgg~~~vp~~s~~~~~~---- 156 (276)
|+| ++||++++.+ |||++||||+|.|||+|||++||+++|++|++|+ .+|||||| ++++|+||++++.+
T Consensus 131 PvD----v~t~v~~k~s~g~p~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG-~s~v~~~S~~~v~g~pl~ 205 (323)
T TIGR01759 131 PAN----TNALIASKNAPDIPPKNFSAMTRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHS-NTQVPDFTHATVDGRPVK 205 (323)
T ss_pred cHH----HHHHHHHHHcCCCCHHHEEEeeHHHHHHHHHHHHHHhCcChHHeEEeEEEecCC-CceeeccccCEECCccHH
Confidence 999 8999999999 9999999999999999999999999999999996 56999997 79999999998764
Q ss_pred -CCChhH--HHHHHHHHhcCccceeeccCCCCchhH-HHHHHHHHHHHHHHhccCCCCCeeEee-eecC-CCC--CccEE
Q 023853 157 -SLTPTE--IDYLTDRIQNGGTEVVEAKTGAGSATL-SMAYAAAKFADACLRGLRGDAGVIECA-YVAS-TVT--ELPFF 228 (276)
Q Consensus 157 -~~~~~~--~~~i~~~v~~~~~~ii~~k~gkg~~~~-s~A~a~~~li~ai~~~~~~~~~~~~~s-~~~~-~y~--~~~~~ 228 (276)
.++++. +++|.+++++++++|++. ||+|+| ++|+++++++++|+++.+ .+.++||| +++| +|+ +++||
T Consensus 206 ~~~~~~~~~~~~i~~~v~~~g~~Ii~~---kG~t~~~~~a~a~~~iv~ail~~~~-~~~v~~~s~~~~g~~Yg~~~~v~~ 281 (323)
T TIGR01759 206 EVIKDDKWLEGEFIPTVQQRGAAVIEA---RGASSAASAANAAIDHVRDWVTGTP-EGDWVSMGVYSDGNPYGIPEGIIF 281 (323)
T ss_pred HHhcchhhHHHHHHHHHHhhHHHHHhc---cCCcchHHHHHHHHHHHHHHHcCCC-CCcEEEEEEEeCCcccCCCCCeEE
Confidence 234433 689999999999999985 578999 477999999999999632 27799998 7788 884 68999
Q ss_pred EEeEEEcCCceEEEcc-CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 023853 229 ASKVRLGRAGIEEIYS-LGPLNEYERAGLEKAKKELAGSIQKG 270 (276)
Q Consensus 229 s~Pv~ig~~Gv~~i~~-~~~L~~~E~~~l~~sa~~i~~~~~~~ 270 (276)
|+||+||++|++++++ + +|+++|+++|++|++.|+++++++
T Consensus 282 s~P~~lg~~Gv~~iv~~l-~L~~~E~~~l~~sa~~lk~~~~~~ 323 (323)
T TIGR01759 282 SFPVTCKGDGEWEIVEGL-PLDDFVRGKLDATEDELLEEKEEA 323 (323)
T ss_pred EEEEEEcCCeeEEEcCCC-CCCHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999 7 999999999999999999998764
No 8
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=100.00 E-value=4.4e-60 Score=431.31 Aligned_cols=259 Identities=22% Similarity=0.262 Sum_probs=232.2
Q ss_pred cccccccCCcccccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCC-cEEEEecCC
Q 023853 5 LAQNKFDVDSRAVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK-AIVNLISNP 83 (276)
Q Consensus 5 ~~~~~~d~~~~~~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~-~~vivvtNP 83 (276)
.+|+++||++|.++..+.++|+.++++||||||||+|.|++||++|++++..|++|++++++.|++++|+ +++|++|||
T Consensus 33 ~a~Dl~d~~~~~~~~~i~~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~~~i~~~a~~~~ivivvtNP 112 (313)
T TIGR01756 33 LAMELEDCAFPNLAGTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAKPTVKVLVIGNP 112 (313)
T ss_pred HHHHHHHhccccCCceEecCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCc
Confidence 5899999997777666668899779999999999999999999999999999999999999999999955 789999999
Q ss_pred CCCcHHHHHHHH-HHcCCCCCCCEEEE-eechHHHHHHHHHHHhCCCCCCcee-eEEeecCCCeeeecccCCCC--CCC-
Q 023853 84 VNSTVPIAAEVF-KKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDV-PVVGGHAGVTILPLLSQVKP--SCS- 157 (276)
Q Consensus 84 ~d~~~~v~t~~~-~~~~~~~~~rviG~-t~lds~R~~~~la~~l~v~~~~v~~-~ViG~hgg~~~vp~~s~~~~--~~~- 157 (276)
+| ++||++ ++++|||++ +||+ |.|||+|||++||++++++|++|+. +|||||| ++++|+||++++ .+.
T Consensus 113 vD----v~t~v~~~~~sg~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V~GeHG-~s~vp~~S~~~V~~~G~~ 186 (313)
T TIGR01756 113 VN----TNCLVAMLHAPKLSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHA-ESMVADLTHAEFTKNGKH 186 (313)
T ss_pred hH----HHHHHHHHHcCCCCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEEEECCC-CceeecccccEEecCCee
Confidence 99 888888 699999999 9999 9999999999999999999999975 5999996 799999999988 541
Q ss_pred ------CChh-HHHHHHHHHhcCccceeeccCCCCchhHHHH-HHHHHHHHHHHhccCCCCCeeEeee-ec-C-CCC--C
Q 023853 158 ------LTPT-EIDYLTDRIQNGGTEVVEAKTGAGSATLSMA-YAAAKFADACLRGLRGDAGVIECAY-VA-S-TVT--E 224 (276)
Q Consensus 158 ------~~~~-~~~~i~~~v~~~~~~ii~~k~gkg~~~~s~A-~a~~~li~ai~~~~~~~~~~~~~s~-~~-~-~y~--~ 224 (276)
++++ .++++.++++++|++|++. ||+|+|++| .++++++++|+++.+ ++.++|||+ ++ + +|+ +
T Consensus 187 ~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~---kg~t~~~~~a~ai~~iv~ail~~~~-~~~i~pvsv~l~~~g~YGi~~ 262 (313)
T TIGR01756 187 QKVFDELCRDYPEPDFFEVIAQRAWKILEM---RGFTSAASPVKASLQHMKAWLFGTR-PGEVLSMGIPVPEGNPYGIKP 262 (313)
T ss_pred hhHhhhcCcHhHHHHHHHHHHHHHHHHHhC---cCCcchHHHHHHHHHHHHHHhcCCC-CCeEEEEEEEecCCCccCCCC
Confidence 2332 3689999999999999984 589999988 699999999999542 568999984 65 3 785 5
Q ss_pred ccEEEEeEEEcCCceEEEcc-CCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023853 225 LPFFASKVRLGRAGIEEIYS-LGPLNEYERAGLEKAKKELAGSIQKGVSFV 274 (276)
Q Consensus 225 ~~~~s~Pv~ig~~Gv~~i~~-~~~L~~~E~~~l~~sa~~i~~~~~~~~~~~ 274 (276)
+++||+||++|++|++++++ + +|+++|+++|++|++.|+++.+.+++.|
T Consensus 263 ~v~~s~P~vig~~Gv~~ive~l-~L~~~E~~~l~~Sa~~l~~e~~~~~~~~ 312 (313)
T TIGR01756 263 GVIFSFPCTVDEDGKVHVVENF-ELNPWLKTKLAQTEKDLFEERETALKAL 312 (313)
T ss_pred CEEEEEEEEEeCCceEEEcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999 7 9999999999999999999999998866
No 9
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=3e-60 Score=432.08 Aligned_cols=249 Identities=26% Similarity=0.396 Sum_probs=224.3
Q ss_pred cccccccCCc-ccc--cceecCCCHHhhcCCCcEEEEcCCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHhhCCCcEEEE
Q 023853 5 LAQNKFDVDS-RAV--RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMT--RDDLFNINAGIVKTLCEGIAKCCPKAIVNL 79 (276)
Q Consensus 5 ~~~~~~d~~~-~~~--~~i~~~~d~~~al~daDiVii~ag~~~k~g~~--r~~~~~~N~~i~~~i~~~i~~~~p~~~viv 79 (276)
.+|+|+|++. +.. ..+. ++||+ +++||||||||+|.|+||||+ |+|++..|++|++++++.+++++|++++|+
T Consensus 40 ~a~DL~~~~~~~~~~~~~i~-~~~y~-~~~~aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~iv 117 (307)
T cd05290 40 EALDFHHATALTYSTNTKIR-AGDYD-DCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIIL 117 (307)
T ss_pred HHHHHHhhhccCCCCCEEEE-ECCHH-HhCCCCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 5789999443 211 2354 57886 899999999999999999999 799999999999999999999999999999
Q ss_pred ecCCCCCcHHHHHHHHHHcCCCCCCCEEEE-eechHHHHHHHHHHHhCCCCCCceeeEEeecCCCeeeecccCCCCCCC-
Q 023853 80 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS- 157 (276)
Q Consensus 80 vtNP~d~~~~v~t~~~~~~~~~~~~rviG~-t~lds~R~~~~la~~l~v~~~~v~~~ViG~hgg~~~vp~~s~~~~~~~- 157 (276)
+|||+| +|||++++.+|||++||||+ |.|||+|||+++|+++|+++++|++||||||| ++++|+||++++.+.
T Consensus 118 vsNPvD----v~t~~~~k~sg~p~~rviG~gt~LDs~R~~~~la~~l~v~~~~V~~~ViGeHG-ds~vp~wS~~~v~g~~ 192 (307)
T cd05290 118 ITNPLD----IAVYIAATEFDYPANKVIGTGTMLDTARLRRIVADKYGVDPKNVTGYVLGEHG-SHAFPVWSLVNIAGLP 192 (307)
T ss_pred ecCcHH----HHHHHHHHHhCcChhheecccchHHHHHHHHHHHHHhCCCcccEEEEEEecCC-CceEEeeeeeEECCEE
Confidence 999999 99999999999999999999 99999999999999999999999999999996 799999999987541
Q ss_pred ----C-----ChhHHHHHHHHHhcCccceeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEee-eecCCCC-Ccc
Q 023853 158 ----L-----TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT-ELP 226 (276)
Q Consensus 158 ----~-----~~~~~~~i~~~v~~~~~~ii~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s-~~~~~y~-~~~ 226 (276)
+ ++.++++|.++++++|++|++. ||+|+|++|.++++++++|+++ ++.++|++ +.+|+|+ +++
T Consensus 193 l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~---KG~t~~~ia~a~~~ii~ail~d---~~~v~~vsv~~~G~yg~~~v 266 (307)
T cd05290 193 LDELEALFGKEPIDKDELLEEVVQAAYDVFNR---KGWTNAGIAKSASRLIKAILLD---ERSILPVCTLLSGEYGLSDV 266 (307)
T ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHc---cCeehHHHHHHHHHHHHHHHhC---CCeEEEEEEeeCCccCCCCE
Confidence 1 2235789999999999999984 5899999999999999999985 78899998 6688884 789
Q ss_pred EEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 023853 227 FFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSI 267 (276)
Q Consensus 227 ~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~i~~~~ 267 (276)
|||+||+||++|+++++++ +|+++|+++|++|++.|++.+
T Consensus 267 ~~svP~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~i~~~~ 306 (307)
T cd05290 267 ALSLPTVIGAKGIERVLEI-PLDEWELEKLHKSAKAIRETI 306 (307)
T ss_pred EEEEEEEEeCCCceEecCC-CCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998 999999999999999999765
No 10
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=100.00 E-value=3.1e-60 Score=430.90 Aligned_cols=249 Identities=26% Similarity=0.413 Sum_probs=227.3
Q ss_pred ccccccccCCcccccceec-CCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecC
Q 023853 4 PLAQNKFDVDSRAVRGFLG-QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 82 (276)
Q Consensus 4 ~~~~~~~d~~~~~~~~i~~-~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtN 82 (276)
-.+|+++|++.+..+.+.. ++||+ +++||||||+|+|.|++|||+|++++.+|++|++++++.|++++|++++|++||
T Consensus 36 g~a~Dl~~~~~~~~~~~~i~~~~~~-~~~daDivVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 114 (299)
T TIGR01771 36 GEAMDLQHAASFLPTPKKIRSGDYS-DCKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATN 114 (299)
T ss_pred HHHHHHHHhhcccCCCeEEecCCHH-HHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3589999999888654333 46786 899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEE-eechHHHHHHHHHHHhCCCCCCceeeEEeecCCCeeeecccCCCCCC-----
Q 023853 83 PVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----- 156 (276)
Q Consensus 83 P~d~~~~v~t~~~~~~~~~~~~rviG~-t~lds~R~~~~la~~l~v~~~~v~~~ViG~hgg~~~vp~~s~~~~~~----- 156 (276)
|+| ++|+++++.+|||++||||+ |.|||+||++++|+++|+++++|+++|||||| ++++|+||++++++
T Consensus 115 P~d----~~t~~~~~~sg~p~~~viG~gt~LDs~R~~~~la~~l~v~~~~V~~~v~GeHG-~s~vp~~S~~~v~g~pl~~ 189 (299)
T TIGR01771 115 PVD----ILTYVAWKLSGFPKNRVIGSGTVLDTARLRYLLAEKLGVDPQSVHAYIIGEHG-DSEVPVWSSATIGGVPLLD 189 (299)
T ss_pred HHH----HHHHHHHHHhCCCHHHEEeccchHHHHHHHHHHHHHhCcCcCeEEEEEEecCC-CceeeceeeeEECCEEHHH
Confidence 999 99999999999999999999 89999999999999999999999999999995 79999999998754
Q ss_pred CC------ChhHHHHHHHHHhcCccceeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEee-eecCCCC-CccEE
Q 023853 157 SL------TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT-ELPFF 228 (276)
Q Consensus 157 ~~------~~~~~~~i~~~v~~~~~~ii~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s-~~~~~y~-~~~~~ 228 (276)
.+ ++.++++|.++++++|+++++. ||+|+|++|+++++++++|+++ ++.++||| +++|+|+ +++||
T Consensus 190 ~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~---kG~t~~~~a~a~~~~i~ail~d---~~~v~~~s~~~~g~yg~~~~~~ 263 (299)
T TIGR01771 190 YLKAKGTETDLDLEEIEKEVRDAAYEIINR---KGATYYGIGMAVARIVEAILHD---ENRVLPVSAYLDGEYGIKDVYI 263 (299)
T ss_pred HhhhcccccHHHHHHHHHHHHHHHHHHhhc---CCeeeHHHHHHHHHHHHHHHcC---CCcEEEEEEEecccCCCCCEEE
Confidence 12 1334679999999999999994 5899999999999999999995 78899998 7788885 67999
Q ss_pred EEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHH
Q 023853 229 ASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAG 265 (276)
Q Consensus 229 s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~i~~ 265 (276)
|+||+||++|+++++++ +|+++|+++|++|++.||+
T Consensus 264 s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~ik~ 299 (299)
T TIGR01771 264 GVPAVLGRNGVEEIIEL-PLSDEEKEAFQKSAETLKK 299 (299)
T ss_pred EEEEEEeCCeeEEEccC-CCCHHHHHHHHHHHHHHhC
Confidence 99999999999999998 9999999999999999974
No 11
>PTZ00325 malate dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-59 Score=427.44 Aligned_cols=267 Identities=56% Similarity=0.892 Sum_probs=237.7
Q ss_pred ccccccccCCcccccceecC---CCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEe
Q 023853 4 PLAQNKFDVDSRAVRGFLGQ---QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 80 (276)
Q Consensus 4 ~~~~~~~d~~~~~~~~i~~~---~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivv 80 (276)
..+|+++|++.. ..+... +++.++++|||+||+++|.|+++|++|.+++..|+++++++++.+++++|+++++++
T Consensus 47 g~a~Dl~~~~~~--~~v~~~td~~~~~~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~ 124 (321)
T PTZ00325 47 GVAADLSHIDTP--AKVTGYADGELWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIV 124 (321)
T ss_pred ccccchhhcCcC--ceEEEecCCCchHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 357889996652 234443 342359999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcHHHHHHHHHHcCCCCCCCEEEEeechHHHHHHHHHHHhCCCCCCceeeEEeecCCC-eeeecccCCCCCCCCC
Q 023853 81 SNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGV-TILPLLSQVKPSCSLT 159 (276)
Q Consensus 81 tNP~d~~~~v~t~~~~~~~~~~~~rviG~t~lds~R~~~~la~~l~v~~~~v~~~ViG~hgg~-~~vp~~s~~~~~~~~~ 159 (276)
|||+|.|+++....+++.+++||+||||++.|||+|||++||+++|++|++|++||||||| + ++||+||++.. .++
T Consensus 125 SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~LDs~R~r~~la~~l~v~~~~V~~~VlGeHG-d~s~v~~~S~~g~--~l~ 201 (321)
T PTZ00325 125 SNPVNSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKFVAEALGMNPYDVNVPVVGGHS-GVTIVPLLSQTGL--SLP 201 (321)
T ss_pred cCcHHHHHHHHHhhhhhccCCChhheeechhHHHHHHHHHHHHHhCcChhheEEEEEeecC-CcccccchhccCC--CCC
Confidence 9999944443332336999999999999966999999999999999999999999999996 6 89999999832 366
Q ss_pred hhHHHHHHHHHhcCccceeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEeeeecCCCC-CccEEEEeEEEcCCc
Q 023853 160 PTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVT-ELPFFASKVRLGRAG 238 (276)
Q Consensus 160 ~~~~~~i~~~v~~~~~~ii~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s~~~~~y~-~~~~~s~Pv~ig~~G 238 (276)
++++++|.++++++|++|++.|+|||+|+||+|+++++++++|++++.|++.++||++++|+|+ +++|+|+||++|++|
T Consensus 202 ~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~g~a~a~~~i~~ail~~~~~~~~v~~~~~~~g~yg~~~v~~s~P~~ig~~G 281 (321)
T PTZ00325 202 EEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWSTSVLKALRGDKGIVECAFVESDMRPECPFFSSPVELGKEG 281 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHhhcCCCCCeEEEEEEecCCCCCCeEEEEEEEEcCCe
Confidence 6779999999999999999987678999999999999999999987667889999998899995 789999999999999
Q ss_pred eEEEcc-CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhC
Q 023853 239 IEEIYS-LGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 276 (276)
Q Consensus 239 v~~i~~-~~~L~~~E~~~l~~sa~~i~~~~~~~~~~~~~ 276 (276)
++++++ + +|+++|+++|++|++.|++.+++++.|++|
T Consensus 282 v~~i~~~~-~L~~~E~~~l~~S~~~i~~~~~~~~~~~~~ 319 (321)
T PTZ00325 282 VERVLPIG-PLNAYEEELLEAAVPDLKKNIEKGLEFARK 319 (321)
T ss_pred eEEEcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999 6 899999999999999999999999999986
No 12
>PRK05442 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-59 Score=430.20 Aligned_cols=259 Identities=20% Similarity=0.258 Sum_probs=231.5
Q ss_pred ccccccccCCcccccceecC-CCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCcEEEEec
Q 023853 4 PLAQNKFDVDSRAVRGFLGQ-QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS 81 (276)
Q Consensus 4 ~~~~~~~d~~~~~~~~i~~~-~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~~~vivvt 81 (276)
-.+|+++|++.|.+..+..+ ++| ++++||||||||+|.|+||||+|++++..|++|++++++.|++|+ |++++|++|
T Consensus 52 g~a~Dl~~~~~~~~~~~~i~~~~y-~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 130 (326)
T PRK05442 52 GVVMELDDCAFPLLAGVVITDDPN-VAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG 130 (326)
T ss_pred eeehhhhhhhhhhcCCcEEecChH-HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 36899999998877654444 566 589999999999999999999999999999999999999999988 899999999
Q ss_pred CCCCCcHHHHHHHHHHcC-CCCCCCEEEEeechHHHHHHHHHHHhCCCCCCceee-EEeecCCCeeeecccCCCCCC---
Q 023853 82 NPVNSTVPIAAEVFKKVG-TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP-VVGGHAGVTILPLLSQVKPSC--- 156 (276)
Q Consensus 82 NP~d~~~~v~t~~~~~~~-~~~~~rviG~t~lds~R~~~~la~~l~v~~~~v~~~-ViG~hgg~~~vp~~s~~~~~~--- 156 (276)
||+| ++||++++.+ |||++||||+|.|||+|||++||++++++|++|+++ |||||| ++++|+||++++++
T Consensus 131 NPvD----v~t~v~~k~s~g~p~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG-~s~~~~~S~~~v~g~pl 205 (326)
T PRK05442 131 NPAN----TNALIAMKNAPDLPAENFTAMTRLDHNRALSQLAAKAGVPVADIKKMTVWGNHS-ATQYPDFRHATIDGKPA 205 (326)
T ss_pred CchH----HHHHHHHHHcCCCCHHHEEeeeHHHHHHHHHHHHHHhCcChHHeEEeEEEECCc-CceeeccccCEECCEEH
Confidence 9999 8899999999 999999999999999999999999999999999986 599997 69999999998865
Q ss_pred --CCChhH--HHHHHHHHhcCccceeeccCCCCchhHHHHHH-HHHHHHHHHhccCCCCCeeEee-eecCCCC--CccEE
Q 023853 157 --SLTPTE--IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYA-AAKFADACLRGLRGDAGVIECA-YVASTVT--ELPFF 228 (276)
Q Consensus 157 --~~~~~~--~~~i~~~v~~~~~~ii~~k~gkg~~~~s~A~a-~~~li~ai~~~~~~~~~~~~~s-~~~~~y~--~~~~~ 228 (276)
.+++.+ +++|.+++++++++|++. ||+++|++|.+ +++++++|+++.+ ++.++||| +++|+|+ +++||
T Consensus 206 ~~~~~~~~~~~~~i~~~v~~~g~~Ii~~---kG~t~~~~a~~~~~~iv~ail~~~~-~~~i~~~sv~~~g~ygi~~~v~~ 281 (326)
T PRK05442 206 AEVINDQAWLEDTFIPTVQKRGAAIIEA---RGASSAASAANAAIDHVRDWVLGTP-EGDWVSMGVPSDGSYGIPEGLIF 281 (326)
T ss_pred HHHccchhhHHHHHHHHHHhhHHHHHhC---cCCccHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEEecCccCCcCCeEE
Confidence 244443 578999999999999994 58999999999 5999999999531 57899998 5688884 78999
Q ss_pred EEeEEEcCCceEEEcc-CCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023853 229 ASKVRLGRAGIEEIYS-LGPLNEYERAGLEKAKKELAGSIQKGVSFV 274 (276)
Q Consensus 229 s~Pv~ig~~Gv~~i~~-~~~L~~~E~~~l~~sa~~i~~~~~~~~~~~ 274 (276)
|+||++| +|++++++ + +|+++|+++|++|+++|+++.+++..++
T Consensus 282 s~P~~ig-~Gv~~iv~~l-~L~~~E~~~l~~s~~~l~~~~~~~~~~~ 326 (326)
T PRK05442 282 GFPVTCE-NGEYEIVQGL-EIDDFSREKIDATLAELEEERDAVKHLL 326 (326)
T ss_pred EEEEEEc-CcEEEEeCCC-CCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999 99999966 6 9999999999999999999998887653
No 13
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=100.00 E-value=1.4e-59 Score=436.65 Aligned_cols=259 Identities=21% Similarity=0.246 Sum_probs=232.8
Q ss_pred cccccccCCcccccceec-CCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCcEEEEecC
Q 023853 5 LAQNKFDVDSRAVRGFLG-QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN 82 (276)
Q Consensus 5 ~~~~~~d~~~~~~~~i~~-~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~~~vivvtN 82 (276)
.+|+++|+++|+++.++. ++||+ +++||||||+|+|.|++||++|++++..|++|++++++.|++++ |++++||+||
T Consensus 93 ~a~DL~d~a~~~~~~v~i~~~~y~-~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsN 171 (387)
T TIGR01757 93 VAMELEDSLYPLLREVSIGIDPYE-VFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGN 171 (387)
T ss_pred HHHHHHHhhhhhcCceEEecCCHH-HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 589999999898887763 46775 89999999999999999999999999999999999999999987 9999999999
Q ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEE-eechHHHHHHHHHHHhCCCCCCce-eeEEeecCCCeeeecccCCCCCC----
Q 023853 83 PVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSC---- 156 (276)
Q Consensus 83 P~d~~~~v~t~~~~~~~~~~~~rviG~-t~lds~R~~~~la~~l~v~~~~v~-~~ViG~hgg~~~vp~~s~~~~~~---- 156 (276)
|+| ++|+++++.+|+|++|+||+ |.|||+|||++||+++++++++|+ +||||||| ++++|+||++++.+
T Consensus 172 PvD----v~t~v~~k~sg~~~~rviG~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHG-ds~vp~~S~a~V~G~pl~ 246 (387)
T TIGR01757 172 PCN----TNALIAMKNAPNIPRKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHS-TTQVPDFVNAKIGGRPAK 246 (387)
T ss_pred cHH----HHHHHHHHHcCCCcccEEEecchhHHHHHHHHHHHHHCcChhHcceeEEEecCC-CcEEecceeeEECCEEhH
Confidence 999 89999999999999999999 999999999999999999999995 99999996 79999999998754
Q ss_pred -CCChhH--HHHHHHHHhcCccceeeccCCCCchhH-HHHHHHHHHHHHHHhccCCCCCeeEee-eecCC-CC--CccEE
Q 023853 157 -SLTPTE--IDYLTDRIQNGGTEVVEAKTGAGSATL-SMAYAAAKFADACLRGLRGDAGVIECA-YVAST-VT--ELPFF 228 (276)
Q Consensus 157 -~~~~~~--~~~i~~~v~~~~~~ii~~k~gkg~~~~-s~A~a~~~li~ai~~~~~~~~~~~~~s-~~~~~-y~--~~~~~ 228 (276)
.+++.+ +++|.++++++|++|++. ||+++| ++|.++++++++|+++. +++.++|+| +++|+ |+ ++++|
T Consensus 247 ~~~~~~~~~~~ei~~~v~~~g~eIi~~---KG~t~~~s~a~ai~~~i~ai~~g~-d~~~il~vsv~~~Ge~YGi~~gv~~ 322 (387)
T TIGR01757 247 EVIKDTKWLEEEFTPTVQKRGGALIKK---WGRSSAASTAVSIADAIKSLVVPT-PEGDWFSTGVYTDGNPYGIAEGLVF 322 (387)
T ss_pred HhcccccchHHHHHHHHHHHHHHHHhc---cCchhHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEEeCCcccCCCCCEEE
Confidence 233323 689999999999999985 466666 99999999999999443 367899998 56885 84 78999
Q ss_pred EEeEEEcCCceEEEc-cCCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023853 229 ASKVRLGRAGIEEIY-SLGPLNEYERAGLEKAKKELAGSIQKGVSFV 274 (276)
Q Consensus 229 s~Pv~ig~~Gv~~i~-~~~~L~~~E~~~l~~sa~~i~~~~~~~~~~~ 274 (276)
|+||++|++|+++++ ++ +|+++|+++|++|++.|+++.+.+++.+
T Consensus 323 S~Pvvig~~Gv~~Iv~~l-~L~~~E~~~l~~Sa~~L~~e~~~~~~~~ 368 (387)
T TIGR01757 323 SMPCRSKGDGDYELATDV-SMDDFLRERIRKSEDELLKEKECVAHLI 368 (387)
T ss_pred EEEEEEeCCEEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999996 87 9999999999999999999998887754
No 14
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=3.3e-59 Score=427.91 Aligned_cols=255 Identities=26% Similarity=0.355 Sum_probs=230.3
Q ss_pred cccccccCCcccccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCcEEEEecCC
Q 023853 5 LAQNKFDVDSRAVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNP 83 (276)
Q Consensus 5 ~~~~~~d~~~~~~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~~~vivvtNP 83 (276)
.+|+++|++.|+++.++.+.+..++++|||+||++||.|++|||+|++++..|++|++++++.|++++ |++++|++|||
T Consensus 49 ~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNP 128 (323)
T cd00704 49 VVMELQDCAFPLLKGVVITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNP 128 (323)
T ss_pred eeeehhhhcccccCCcEEecChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 57999999988888776655455699999999999999999999999999999999999999999996 99999999999
Q ss_pred CCCcHHHHHHHHHHcCC-CCCCCEEEEeechHHHHHHHHHHHhCCCCCCce-eeEEeecCCCeeeecccCCCCCCC----
Q 023853 84 VNSTVPIAAEVFKKVGT-YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSCS---- 157 (276)
Q Consensus 84 ~d~~~~v~t~~~~~~~~-~~~~rviG~t~lds~R~~~~la~~l~v~~~~v~-~~ViG~hgg~~~vp~~s~~~~~~~---- 157 (276)
+| ++|+++++.+| +|++||||+|.|||+|||++||++++++|++|+ ++|||||| ++++|+||++++.+.
T Consensus 129 vD----~~t~~~~k~sg~~p~~~vig~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG-~s~v~~~S~~~v~g~~~~~ 203 (323)
T cd00704 129 AN----TNALIALKNAPNLPPKNFTALTRLDHNRAKAQVARKLGVRVSDVKNVIIWGNHS-NTQVPDLSNAVVYGPGGTE 203 (323)
T ss_pred HH----HHHHHHHHHcCCCCHHHEEEeeHHHHHHHHHHHHHHhCcCHHHceeeeEEeccc-CceeeccccceecCccHHH
Confidence 99 89999999999 599999999999999999999999999999995 68999997 699999999987651
Q ss_pred -----CChh-HHHHHHHHHhcCccceeeccCCCCchhHH-HHHHHHHHHHHHHhccCCCC--CeeEee-eecCCC-C--C
Q 023853 158 -----LTPT-EIDYLTDRIQNGGTEVVEAKTGAGSATLS-MAYAAAKFADACLRGLRGDA--GVIECA-YVASTV-T--E 224 (276)
Q Consensus 158 -----~~~~-~~~~i~~~v~~~~~~ii~~k~gkg~~~~s-~A~a~~~li~ai~~~~~~~~--~~~~~s-~~~~~y-~--~ 224 (276)
++++ ..++|.+++++++++|++. ||+++|+ +|+++++++++|+++ ++ .++||| +++|+| + +
T Consensus 204 ~~~~~~~~~~~~~~i~~~v~~~~~~Ii~~---kg~t~~~~~a~a~~~iv~ail~~---~~~~~v~~~s~~~~g~y~gi~~ 277 (323)
T cd00704 204 WVLDLLDEEWLNDEFVKTVQKRGAAIIKK---RGASSAASAAKAIADHVKDWLFG---TPPGEIVSMGVYSPGNPYGIPP 277 (323)
T ss_pred hcccccChHHHHHHHHHHHHhhHHHHHhc---cCcchhHHHHHHHHHHHHHHHhC---CCCCcEEEEEEEeCCccCCCCC
Confidence 3332 2578999999999999985 4788897 699999999999996 45 799998 778888 4 6
Q ss_pred ccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 023853 225 LPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGV 271 (276)
Q Consensus 225 ~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~i~~~~~~~~ 271 (276)
++|||+||+||++|+++++++ +|+++|+++|++|++.|+++.+.++
T Consensus 278 ~v~~s~P~~ig~~Gv~~v~~l-~L~~~E~~~l~~s~~~l~~~~~~~~ 323 (323)
T cd00704 278 GIVFSFPCTCKGGGWHVVEDL-KLNDWLREKLKATEEELIEEKEIAL 323 (323)
T ss_pred ceEEEEEEEEcCCEEEEecCC-CCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 899999999999999999998 9999999999999999999988764
No 15
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.5e-59 Score=427.07 Aligned_cols=252 Identities=25% Similarity=0.338 Sum_probs=229.7
Q ss_pred ccccccccCCc-ccccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecC
Q 023853 4 PLAQNKFDVDS-RAVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 82 (276)
Q Consensus 4 ~~~~~~~d~~~-~~~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtN 82 (276)
-.+|+++||+. +....+..++||+ +++|||||||++|.+++|||+|++++.+|++|++++++.|++++|++++|++||
T Consensus 43 g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 121 (312)
T cd05293 43 GEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN 121 (312)
T ss_pred HHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC
Confidence 35899999882 2223788889997 699999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEE-eechHHHHHHHHHHHhCCCCCCceeeEEeecCCCeeeecccCCCCCC-----
Q 023853 83 PVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----- 156 (276)
Q Consensus 83 P~d~~~~v~t~~~~~~~~~~~~rviG~-t~lds~R~~~~la~~l~v~~~~v~~~ViG~hgg~~~vp~~s~~~~~~----- 156 (276)
|+| +++|++++.+|+|++||||+ |.||++|+++++|+++++++++|+++|||||| ++++|+||++++.+
T Consensus 122 P~d----~~t~~~~k~sg~p~~~viG~gt~Ld~~R~~~~la~~l~v~~~~v~~~v~GeHG-~s~vp~~S~~~i~g~~l~~ 196 (312)
T cd05293 122 PVD----IMTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAERLGVAPSSVHGWIIGEHG-DSSVPVWSGVNVAGVRLQD 196 (312)
T ss_pred hHH----HHHHHHHHHhCCCHHHEEecCchHHHHHHHHHHHHHhCCChhhEEEEEeecCC-CCccccceeceECCEEHHH
Confidence 999 99999999999999999999 99999999999999999999999999999996 79999999998754
Q ss_pred C-------CChhHHHHHHHHHhcCccceeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEee-eecCCCC--Ccc
Q 023853 157 S-------LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT--ELP 226 (276)
Q Consensus 157 ~-------~~~~~~~~i~~~v~~~~~~ii~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s-~~~~~y~--~~~ 226 (276)
. .+++++++|.++++++|++|++. ||+|+||+|+++++++++|+++ ++.++|++ +++|+|+ +++
T Consensus 197 ~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~---kg~t~~~~a~a~~~ii~ail~d---~~~~~~vsv~~~g~yg~~~d~ 270 (312)
T cd05293 197 LNPDIGTDKDPEKWKEVHKQVVDSAYEVIKL---KGYTSWAIGLSVADLVDAILRN---TGRVHSVSTLVKGLHGIEDEV 270 (312)
T ss_pred HhhhccccccHHHHHHHHHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHHHHcC---CCeEEEEEEEeCCccCCCCCe
Confidence 1 12345899999999999999984 5899999999999999999985 77899998 6688773 789
Q ss_pred EEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHH
Q 023853 227 FFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQ 268 (276)
Q Consensus 227 ~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~i~~~~~ 268 (276)
+||+||+||++|+++++++ +|+++|+++|++|++.|++.++
T Consensus 271 ~~svP~~ig~~Gi~~i~~l-~L~~~E~~~l~~s~~~i~~~~~ 311 (312)
T cd05293 271 FLSLPCILGENGITHVIKQ-PLTEEEQEKLQKSADTLWEVQK 311 (312)
T ss_pred EEEEeEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998 9999999999999999998765
No 16
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=100.00 E-value=3.6e-59 Score=439.82 Aligned_cols=259 Identities=22% Similarity=0.268 Sum_probs=233.7
Q ss_pred cccccccCCccccccee-cCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh-hCCCcEEEEecC
Q 023853 5 LAQNKFDVDSRAVRGFL-GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAK-CCPKAIVNLISN 82 (276)
Q Consensus 5 ~~~~~~d~~~~~~~~i~-~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~-~~p~~~vivvtN 82 (276)
.+||++|+++|++++++ .++||+ +++|||||||++|.|++|||+|+|++..|++|++++++.|++ ++|++++|++||
T Consensus 149 ~amDL~daa~~~~~~v~i~~~~ye-~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsN 227 (444)
T PLN00112 149 VAMELEDSLYPLLREVSIGIDPYE-VFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGN 227 (444)
T ss_pred HHHHHHHhhhhhcCceEEecCCHH-HhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCC
Confidence 58999999999988876 356775 899999999999999999999999999999999999999999 599999999999
Q ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEE-eechHHHHHHHHHHHhCCCCCCce-eeEEeecCCCeeeecccCCCCCC----
Q 023853 83 PVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSC---- 156 (276)
Q Consensus 83 P~d~~~~v~t~~~~~~~~~~~~rviG~-t~lds~R~~~~la~~l~v~~~~v~-~~ViG~hgg~~~vp~~s~~~~~~---- 156 (276)
|+| ++|+++++.+|++++|+||+ |.|||+|||++||+++||++++|+ ++|||||| +++||+||++++++
T Consensus 228 PvD----v~t~v~~k~sg~~~~rViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHG-dsqvp~wS~a~V~G~pl~ 302 (444)
T PLN00112 228 PCN----TNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHS-TTQVPDFLNAKINGLPVK 302 (444)
T ss_pred cHH----HHHHHHHHHcCCCCcceEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEecCC-CceeeccceeEECCccHH
Confidence 999 89999999999999999999 999999999999999999999995 69999996 79999999998865
Q ss_pred -CCChhH--HHHHHHHHhcCccceeeccCCCCchhH-HHHHHHHHHHHHHHhccCCCCCeeEee-eecC-CCC--CccEE
Q 023853 157 -SLTPTE--IDYLTDRIQNGGTEVVEAKTGAGSATL-SMAYAAAKFADACLRGLRGDAGVIECA-YVAS-TVT--ELPFF 228 (276)
Q Consensus 157 -~~~~~~--~~~i~~~v~~~~~~ii~~k~gkg~~~~-s~A~a~~~li~ai~~~~~~~~~~~~~s-~~~~-~y~--~~~~~ 228 (276)
.+++.+ +++|.++++++|++|++. ||+++| ++|.++++++++|+++. |++.++||| +++| +|+ ++++|
T Consensus 303 e~i~~~~~~~~ei~~~v~~~g~~Ii~~---kG~t~~~s~a~ai~~~I~ail~~~-d~~~vlpvsv~l~G~~YGi~~dv~~ 378 (444)
T PLN00112 303 EVITDHKWLEEEFTPKVQKRGGVLIKK---WGRSSAASTAVSIADAIKSLVTPT-PEGDWFSTGVYTDGNPYGIAEGLVF 378 (444)
T ss_pred HhhccccchHHHHHHHHHHHHHHHHhc---cCchhHHHHHHHHHHHHHHHHcCC-CCCeEEEEEEEeCCcccCCCCCeEE
Confidence 233434 589999999999999984 466777 99999999999999533 478899998 6688 485 78999
Q ss_pred EEeEEEcCCceEEEc-cCCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023853 229 ASKVRLGRAGIEEIY-SLGPLNEYERAGLEKAKKELAGSIQKGVSFV 274 (276)
Q Consensus 229 s~Pv~ig~~Gv~~i~-~~~~L~~~E~~~l~~sa~~i~~~~~~~~~~~ 274 (276)
|+||++|++|+++++ ++ +|+++|+++|++|+++|+++.+.+...+
T Consensus 379 SvPvvig~~Gv~~Iv~el-~L~~~E~~~l~~Sa~~L~~e~~~~~~~~ 424 (444)
T PLN00112 379 SMPCRSKGDGDYEIVKDV-EIDDYLRERIKKSEAELLAEKRCVAHLT 424 (444)
T ss_pred EeEEEEeCCeeEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 67 9999999999999999999988876654
No 17
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=4.7e-59 Score=403.72 Aligned_cols=241 Identities=25% Similarity=0.375 Sum_probs=223.7
Q ss_pred ccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHH
Q 023853 17 VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFK 96 (276)
Q Consensus 17 ~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d~~~~v~t~~~~ 96 (276)
.-.|..+.||. +.+|+++||+|||..+++|++|++++++|+.|||.+++.+.+|+|+++++++|||+| +|||+.|
T Consensus 74 ~~~V~~~~Dy~-~sa~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVD----ilTYv~w 148 (332)
T KOG1495|consen 74 TPNVVASKDYS-VSANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVD----ILTYVTW 148 (332)
T ss_pred CCceEecCccc-ccCCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchH----HHHHHHH
Confidence 34577889997 899999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HcCCCCCCCEEEE-eechHHHHHHHHHHHhCCCCCCceeeEEeecCCCeeeecccCCCCCC------------CCChhHH
Q 023853 97 KVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC------------SLTPTEI 163 (276)
Q Consensus 97 ~~~~~~~~rviG~-t~lds~R~~~~la~~l~v~~~~v~~~ViG~hgg~~~vp~~s~~~~~~------------~~~~~~~ 163 (276)
|.+|||++||||+ |+|||+|||++++++||++|+++++||+|||| ++.||+||.+.+.+ ..+++.|
T Consensus 149 KLSgfP~nRViGsGcnLDsaRFryLi~~~Lg~~pss~hgwIiGEHG-dSsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w 227 (332)
T KOG1495|consen 149 KLSGFPKNRVIGSGCNLDSARFRYLIGNRLGVHPSSCHGWIIGEHG-DSSVPVWSGVNIAGVSLKDLNPDLGTDYDPENW 227 (332)
T ss_pred HHcCCcccceeccCcCccHHHHHHHHHHHhCCCcccceEEEeeccC-CccceecccccccceEHhHhChhhcCCCCHHHH
Confidence 9999999999999 99999999999999999999999999999996 79999999997643 3567789
Q ss_pred HHHHHHHhcCccceeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEee-eecCCCC--CccEEEEeEEEcCCceE
Q 023853 164 DYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT--ELPFFASKVRLGRAGIE 240 (276)
Q Consensus 164 ~~i~~~v~~~~~~ii~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s-~~~~~y~--~~~~~s~Pv~ig~~Gv~ 240 (276)
+++.++|..++|++|++| |+|+|++|.++++++++|++| .+.++|++ .+.|.|+ +++|||+||++|++|+.
T Consensus 228 ~eihK~v~~sayeviklK---GyTswaIglsva~l~~ail~n---~~~i~~Vst~~kg~~gI~~dVflSlPc~l~~~Gi~ 301 (332)
T KOG1495|consen 228 KEIHKQVVDSAYEVIKLK---GYTSWAIGLSVADLAQAILRN---LRRIHPVSTMVKGLYGIDDDVFLSLPCLLGANGIT 301 (332)
T ss_pred HHHHHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHhC---cCceeeeeeccccccCCCCceEEecceeecCCchh
Confidence 999999999999999975 899999999999999999996 67899998 6788774 68999999999999999
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 023853 241 EIYSLGPLNEYERAGLEKAKKELAGSIQKGV 271 (276)
Q Consensus 241 ~i~~~~~L~~~E~~~l~~sa~~i~~~~~~~~ 271 (276)
.+++. +|+++|.++|.+||+.|.+ ++..+
T Consensus 302 ~vv~~-~Lt~~E~akL~kSa~tl~~-~q~~l 330 (332)
T KOG1495|consen 302 HVVKQ-KLTDEEVAKLKKSAKTLLE-AQKSL 330 (332)
T ss_pred hhhcc-cCCHHHHHHHHHHHHHHHH-HHHhc
Confidence 99998 9999999999999999975 44443
No 18
>PLN02602 lactate dehydrogenase
Probab=100.00 E-value=1e-58 Score=427.88 Aligned_cols=253 Identities=21% Similarity=0.342 Sum_probs=230.5
Q ss_pred ccccccccCCcccc--cceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEec
Q 023853 4 PLAQNKFDVDSRAV--RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 81 (276)
Q Consensus 4 ~~~~~~~d~~~~~~--~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvt 81 (276)
-.+|+++|++. .+ ..|..++||+ +++||||||||+|.|++|||+|+|++.+|++|++++++.|++++|++++|++|
T Consensus 77 g~a~DL~~~~~-~~~~~~i~~~~dy~-~~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 77 GEMLDLQHAAA-FLPRTKILASTDYA-VTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred HHHHHHHhhhh-cCCCCEEEeCCCHH-HhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 36899999873 32 4676677997 69999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEE-eechHHHHHHHHHHHhCCCCCCceeeEEeecCCCeeeecccCCCCCC----
Q 023853 82 NPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC---- 156 (276)
Q Consensus 82 NP~d~~~~v~t~~~~~~~~~~~~rviG~-t~lds~R~~~~la~~l~v~~~~v~~~ViG~hgg~~~vp~~s~~~~~~---- 156 (276)
||+| ++|+++++.+|||++||||+ |.||++|++++||+++|+++++|+++|||||| ++++|+||++++.+
T Consensus 155 NPvd----v~t~~~~k~sg~p~~rviG~gt~LDs~R~r~~lA~~l~v~~~~V~~~ViGeHG-ds~vp~wS~~~i~G~pl~ 229 (350)
T PLN02602 155 NPVD----VLTYVAWKLSGFPANRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIVGEHG-DSSVALWSSVSVGGVPVL 229 (350)
T ss_pred CchH----HHHHHHHHHhCCCHHHEEeecchHHHHHHHHHHHHHhCCCccceeeeEEecCC-CceEeeeeeeeECCEEHH
Confidence 9999 89999999999999999999 79999999999999999999999999999996 79999999997643
Q ss_pred --------CCChhHHHHHHHHHhcCccceeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEee-eecCCCC---C
Q 023853 157 --------SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT---E 224 (276)
Q Consensus 157 --------~~~~~~~~~i~~~v~~~~~~ii~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s-~~~~~y~---~ 224 (276)
.+++++++++.++++++|++|++. ||+|+||+|+++++++++|+++ ++.++||+ +++|+|+ +
T Consensus 230 ~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~---KG~t~~gia~a~a~ii~ail~d---~~~v~~vsv~~~g~Yg~~~~ 303 (350)
T PLN02602 230 SFLEKQQIAYEKETLEEIHRAVVDSAYEVIKL---KGYTSWAIGYSVASLVRSLLRD---QRRIHPVSVLAKGFHGIDEG 303 (350)
T ss_pred HHhhccCCccCHHHHHHHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHhc---CCCeEEEEEecccccCCCCC
Confidence 133455789999999999999994 5899999999999999999995 78999998 5688884 6
Q ss_pred ccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 023853 225 LPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKG 270 (276)
Q Consensus 225 ~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~i~~~~~~~ 270 (276)
++|+|+||+||++|+++++++ +|+++|+++|++|++.|++.++..
T Consensus 304 ~v~~s~P~~ig~~Gi~~i~~l-~L~~~E~~~l~~sa~~l~~~~~~~ 348 (350)
T PLN02602 304 DVFLSLPAQLGRNGVLGVVNV-HLTDEEAERLRKSAKTLWEVQSQL 348 (350)
T ss_pred CcEEEEEEEEeCCeeEEEecC-CCCHHHHHHHHHHHHHHHHHHHHh
Confidence 789999999999999999998 999999999999999999887664
No 19
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=100.00 E-value=3.1e-58 Score=419.88 Aligned_cols=252 Identities=27% Similarity=0.400 Sum_probs=227.9
Q ss_pred ccccccccCCccccccee-cCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecC
Q 023853 4 PLAQNKFDVDSRAVRGFL-GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 82 (276)
Q Consensus 4 ~~~~~~~d~~~~~~~~i~-~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtN 82 (276)
-++|+++|+..+....+. .+.+++ ++++||+||+++|.|+++||+|++++.+|++|++++++.|++++|++++|++||
T Consensus 40 ~~a~dL~~~~~~~~~~~~i~~~~~~-~l~~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsN 118 (306)
T cd05291 40 GEALDLEDALAFLPSPVKIKAGDYS-DCKDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN 118 (306)
T ss_pred HhHhhHHHHhhccCCCeEEEcCCHH-HhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 367889998765543322 246776 799999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEE-eechHHHHHHHHHHHhCCCCCCceeeEEeecCCCeeeecccCCCCCC-----
Q 023853 83 PVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----- 156 (276)
Q Consensus 83 P~d~~~~v~t~~~~~~~~~~~~rviG~-t~lds~R~~~~la~~l~v~~~~v~~~ViG~hgg~~~vp~~s~~~~~~----- 156 (276)
|+| ++|+++++.+|||++||||+ |.||++||+++||+++|+++++|+++|||||| ++++|+||++++.+
T Consensus 119 P~d----~~~~~~~~~~g~p~~~v~g~gt~LDs~R~~~~la~~l~v~~~~v~~~V~G~Hg-~s~~~~~S~~~v~g~~~~~ 193 (306)
T cd05291 119 PVD----VITYVVQKLSGLPKNRVIGTGTSLDTARLRRALAEKLNVDPRSVHAYVLGEHG-DSQFVAWSTVTVGGKPLLD 193 (306)
T ss_pred hHH----HHHHHHHHHhCcCHHHEeeccchHHHHHHHHHHHHHHCCCcccceEEEEecCC-CceeecceeeEEcCEEHHH
Confidence 999 99999999999999999999 89999999999999999999999999999996 79999999998754
Q ss_pred -----CCChhHHHHHHHHHhcCccceeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEee-eecCCCC-CccEEE
Q 023853 157 -----SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT-ELPFFA 229 (276)
Q Consensus 157 -----~~~~~~~~~i~~~v~~~~~~ii~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s-~~~~~y~-~~~~~s 229 (276)
.+.+++++++.++++++|++|++. ||+|+|++|.++++++++|+++ ++.++||+ +++|+|+ +++|||
T Consensus 194 ~~~~~~~~~~~~~~~~~~v~~~g~~ii~~---kg~t~~~~a~a~~~~~~ail~~---~~~v~~~s~~~~g~yg~~~v~~s 267 (306)
T cd05291 194 LLKEGKLSELDLDEIEEDVRKAGYEIING---KGATYYGIATALARIVKAILND---ENAILPVSAYLDGEYGEKDVYIG 267 (306)
T ss_pred HhhccccChHHHHHHHHHHHHHHHHHHHc---cCccHHHHHHHHHHHHHHHHcC---CCEEEEEEEEeccccCCCCEEEE
Confidence 133456889999999999999984 5899999999999999999984 78899998 6788884 689999
Q ss_pred EeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHH
Q 023853 230 SKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQ 268 (276)
Q Consensus 230 ~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~i~~~~~ 268 (276)
+||+||++|+++++++ +|+++|+++|++|+++|++.++
T Consensus 268 ~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s~~~l~~~~~ 305 (306)
T cd05291 268 VPAIIGRNGVEEVIEL-DLTEEEQEKFEKSADIIKENIK 305 (306)
T ss_pred EEEEEeCCCEEEEECC-CCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999998 9999999999999999998764
No 20
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=100.00 E-value=3.5e-58 Score=420.41 Aligned_cols=253 Identities=25% Similarity=0.376 Sum_probs=229.6
Q ss_pred ccccccccCCcccccceec-CCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecC
Q 023853 4 PLAQNKFDVDSRAVRGFLG-QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 82 (276)
Q Consensus 4 ~~~~~~~d~~~~~~~~i~~-~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtN 82 (276)
..+|+++||+ |+++.+.. ++||+ +++|||+||+++|.|++||++|++++..|++|++++++.+++++|+++++++||
T Consensus 46 g~~~Dl~~~~-~~~~~~~i~~~~~~-~~~~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN 123 (315)
T PRK00066 46 GDAMDLSHAV-PFTSPTKIYAGDYS-DCKDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN 123 (315)
T ss_pred HHHHHHHhhc-cccCCeEEEeCCHH-HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 3689999988 33333333 56785 799999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEE-eechHHHHHHHHHHHhCCCCCCceeeEEeecCCCeeeecccCCCCCC-----
Q 023853 83 PVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----- 156 (276)
Q Consensus 83 P~d~~~~v~t~~~~~~~~~~~~rviG~-t~lds~R~~~~la~~l~v~~~~v~~~ViG~hgg~~~vp~~s~~~~~~----- 156 (276)
|+| ++++++++.+|+|++||||+ |.|||+||++++|+++|+++++|+++|||||| ++++|+||++++++
T Consensus 124 P~d----~~~~~~~k~sg~p~~~viG~gt~LDs~R~~~~la~~l~v~~~~V~~~viGeHG-~s~v~~~S~~~v~g~~l~~ 198 (315)
T PRK00066 124 PVD----ILTYATWKLSGFPKERVIGSGTSLDSARFRYMLSEKLDVDPRSVHAYIIGEHG-DTEFPVWSHANVAGVPLEE 198 (315)
T ss_pred cHH----HHHHHHHHHhCCCHHHEeecCchHHHHHHHHHHHHHhCCCcccEEEEEEecCC-CcceecceeceECCEEHHH
Confidence 999 88888999999999999999 89999999999999999999999999999995 79999999998754
Q ss_pred ------CCChhHHHHHHHHHhcCccceeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEee-eecCCCC-CccEE
Q 023853 157 ------SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT-ELPFF 228 (276)
Q Consensus 157 ------~~~~~~~~~i~~~v~~~~~~ii~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s-~~~~~y~-~~~~~ 228 (276)
.+++++++++.++++++++++++. ||+++||+|+++++++++|+++ ++.++|++ +++|+|+ +++||
T Consensus 199 ~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~---kg~t~~~~a~~~~~i~~ail~~---~~~v~~~sv~~~g~yg~~~v~~ 272 (315)
T PRK00066 199 YLEENEQYDEEDLDEIFENVRDAAYEIIEK---KGATYYGIAMALARITKAILNN---ENAVLPVSAYLEGQYGEEDVYI 272 (315)
T ss_pred HhhhccCcCHHHHHHHHHHHHHHHHHHHhc---CCeehHHHHHHHHHHHHHHHcC---CCeEEEEEEEeccccCCCCEEE
Confidence 134466889999999999999995 5899999999999999999994 77899998 6788894 78999
Q ss_pred EEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 023853 229 ASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKG 270 (276)
Q Consensus 229 s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~i~~~~~~~ 270 (276)
|+||+||++|+++++++ +|+++|+++|++|+++|++.++..
T Consensus 273 S~Pv~ig~~Gv~~i~~l-~L~~~E~~~L~~s~~~l~~~~~~~ 313 (315)
T PRK00066 273 GVPAVVNRNGIREIVEL-PLNDDEKQKFAHSADVLKEIMDEA 313 (315)
T ss_pred EeEEEEeCCcEEEEcCC-CCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998 999999999999999999998764
No 21
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=100.00 E-value=6.1e-58 Score=416.65 Aligned_cols=250 Identities=28% Similarity=0.408 Sum_probs=228.4
Q ss_pred cccccccCCcccc-cceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCC
Q 023853 5 LAQNKFDVDSRAV-RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 83 (276)
Q Consensus 5 ~~~~~~d~~~~~~-~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP 83 (276)
++|+++|++.++- ..+..++|++ +++|||+||+++|.|+++|++|++++.+|+++++++++.|++++|++++|++|||
T Consensus 39 ~~~DL~~~~~~~~~~~i~~~~~~~-~l~~aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP 117 (300)
T cd00300 39 DALDLSHASAFLATGTIVRGGDYA-DAADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNP 117 (300)
T ss_pred HHHhHHHhccccCCCeEEECCCHH-HhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCh
Confidence 5789999988732 2455567886 8999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHcCCCCCCCEEEE-eechHHHHHHHHHHHhCCCCCCceeeEEeecCCCeeeecccCCCCCC-----C
Q 023853 84 VNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----S 157 (276)
Q Consensus 84 ~d~~~~v~t~~~~~~~~~~~~rviG~-t~lds~R~~~~la~~l~v~~~~v~~~ViG~hgg~~~vp~~s~~~~~~-----~ 157 (276)
+| ++++++++.+|+|++||||+ |.|||+||++++|+++++++++|+++|+|||| ++++|+||++++++ .
T Consensus 118 ~d----~~~~~~~~~sg~~~~kviG~gt~lDs~r~~~~la~~l~v~~~~v~~~viGeHg-~s~v~~~S~~~v~g~p~~~~ 192 (300)
T cd00300 118 VD----ILTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLAEKLDVDPQSVHAYVLGEHG-DSQVVAWSTATVGGLPLEEL 192 (300)
T ss_pred HH----HHHHHHHHHhCcCHHHEEecCCcHHHHHHHHHHHHHhCCCcccEEEEEEeccC-CceeeeeeeeEECCEEHHHh
Confidence 99 99999999999999999999 89999999999999999999999999999996 79999999998764 1
Q ss_pred C--ChhHHHHHHHHHhcCccceeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEee-eecCCCC-CccEEEEeEE
Q 023853 158 L--TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT-ELPFFASKVR 233 (276)
Q Consensus 158 ~--~~~~~~~i~~~v~~~~~~ii~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s-~~~~~y~-~~~~~s~Pv~ 233 (276)
+ +++.++++.++++++++++++. ||+++||+|+++++++++|+++ ++.++|++ +++|+|+ +++|||+||+
T Consensus 193 ~~~~~~~~~~l~~~v~~~~~~ii~~---kg~t~~~~a~a~~~~~~ai~~~---~~~v~~~s~~~~g~yg~~~~~~s~Pv~ 266 (300)
T cd00300 193 APFTKLDLEAIEEEVRTSGYEIIRL---KGATNYGIATAIADIVKSILLD---ERRVLPVSAVQEGQYGIEDVALSVPAV 266 (300)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHc---cCcchHHHHHHHHHHHHHHHcC---CCeEEEEEEEecCccCCCCEEEEEEEE
Confidence 2 2345789999999999999984 5899999999999999999995 78899998 6688884 7899999999
Q ss_pred EcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 023853 234 LGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSI 267 (276)
Q Consensus 234 ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~i~~~~ 267 (276)
+|++|+++++++ +|+++|+++|++|+++|++.+
T Consensus 267 ig~~Gi~~i~~l-~L~~~E~~~l~~s~~~l~~~~ 299 (300)
T cd00300 267 VGREGVVRILEI-PLTEDEEAKLQKSAEALKEVL 299 (300)
T ss_pred EeCCCeEEEecC-CCCHHHHHHHHHHHHHHHHHh
Confidence 999999999997 999999999999999999765
No 22
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=100.00 E-value=8.4e-57 Score=412.23 Aligned_cols=258 Identities=23% Similarity=0.284 Sum_probs=230.0
Q ss_pred cccccccCCcccccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCcEEEEecCC
Q 023853 5 LAQNKFDVDSRAVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNP 83 (276)
Q Consensus 5 ~~~~~~d~~~~~~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~~~vivvtNP 83 (276)
.+|+++|++.+++..++.+++..++++|||+||+|+|.|+++|++|++++..|++|++++++.|++++ |++++|++|||
T Consensus 48 ~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNP 127 (324)
T TIGR01758 48 VVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNP 127 (324)
T ss_pred eEeehhcccchhcCceeccCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCc
Confidence 57999999988888887765533589999999999999999999999999999999999999999996 99999999999
Q ss_pred CCCcHHHHHHHHHHcCCCCCCCEEEE-eechHHHHHHHHHHHhCCCCCCce-eeEEeecCCCeeeecccCCCCC-CC---
Q 023853 84 VNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPS-CS--- 157 (276)
Q Consensus 84 ~d~~~~v~t~~~~~~~~~~~~rviG~-t~lds~R~~~~la~~l~v~~~~v~-~~ViG~hgg~~~vp~~s~~~~~-~~--- 157 (276)
+| +|||++++.+|++|+|+||+ |.|||+|||++||+++|++|++|+ ++|||||| ++++|+||++++. +.
T Consensus 128 vD----v~t~v~~~~sg~~~~~vig~gt~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG-~s~v~~~S~~~v~~g~~~~ 202 (324)
T TIGR01758 128 AN----TNALVLSNYAPSIPPKNFSALTRLDHNRALAQVAERAGVPVSDVKNVIIWGNHS-STQYPDVNHATVTKGGKQK 202 (324)
T ss_pred HH----HHHHHHHHHcCCCCcceEEEeeehHHHHHHHHHHHHhCCChhhceEeEEEECCC-CCcccccccceecCCCCcc
Confidence 99 99999999998888889999 999999999999999999999997 69999997 6999999999887 51
Q ss_pred -----CChhH--HHHHHHHHhcCccceeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEee-eecCC-CC--Ccc
Q 023853 158 -----LTPTE--IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVAST-VT--ELP 226 (276)
Q Consensus 158 -----~~~~~--~~~i~~~v~~~~~~ii~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s-~~~~~-y~--~~~ 226 (276)
++++. +++|.+++++++++|++.| ++++.||+|.++++++++|+++. +++.++||| +++|+ |+ +++
T Consensus 203 pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k--~~~t~~~ia~~~~~i~~ai~~~~-~~~~i~~vs~~~~g~~yg~~~~v 279 (324)
T TIGR01758 203 PVREAIKDDAYLDGEFITTVQQRGAAIIRAR--KLSSALSAAKAAVDQMHDWVLGT-PEGTFVSMGVYSDGSPYGVPKGL 279 (324)
T ss_pred CHHHHhcchhhHHHHHHHHHHhCHHHHHhcc--CCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEeecCCcccCCCCce
Confidence 22322 5789999999999999964 36899999999999999999432 378899998 66888 84 689
Q ss_pred EEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 023853 227 FFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGV 271 (276)
Q Consensus 227 ~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~i~~~~~~~~ 271 (276)
|||+||++|++|++.+.++ +|+++|+++|++|++.|++++++++
T Consensus 280 ~~s~P~~ig~g~~~~i~el-~L~~~E~~~l~~s~~~lk~~~~~~~ 323 (324)
T TIGR01758 280 IFSFPVTCKNGEWKIVEGL-CVDDSSRKKLALTAKELEEERDEAL 323 (324)
T ss_pred EEEEEEEEcCCeEEEecCC-CCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999997777776667 8999999999999999999998874
No 23
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=6.6e-57 Score=412.60 Aligned_cols=257 Identities=21% Similarity=0.258 Sum_probs=229.8
Q ss_pred ccccccccCCcccccceec-CCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCcEEEEec
Q 023853 4 PLAQNKFDVDSRAVRGFLG-QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS 81 (276)
Q Consensus 4 ~~~~~~~d~~~~~~~~i~~-~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~~~vivvt 81 (276)
-.+|+++|++.|++++++. ++|| ++++|||+||||+|.|++||++|++++..|++|++++++.|++++ |++++|++|
T Consensus 50 g~a~Dl~~~~~~~~~~~~i~~~~~-~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (322)
T cd01338 50 GVAMELEDCAFPLLAEIVITDDPN-VAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG 128 (322)
T ss_pred eeehhhhhccccccCceEEecCcH-HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 4689999999887765444 4566 589999999999999999999999999999999999999999999 599999999
Q ss_pred CCCCCcHHHHHHHHHHcC-CCCCCCEEEEeechHHHHHHHHHHHhCCCCCCcee-eEEeecCCCeeeecccCCCCCC---
Q 023853 82 NPVNSTVPIAAEVFKKVG-TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDV-PVVGGHAGVTILPLLSQVKPSC--- 156 (276)
Q Consensus 82 NP~d~~~~v~t~~~~~~~-~~~~~rviG~t~lds~R~~~~la~~l~v~~~~v~~-~ViG~hgg~~~vp~~s~~~~~~--- 156 (276)
||+| ++|+++++.+ +||++||+|+|.||++||++.+|+++|+++++|++ +|||+|| ++++|+||++++.+
T Consensus 129 NPvD----~~t~~~~k~sg~~p~~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG-~s~vp~~S~~~v~g~pl 203 (322)
T cd01338 129 NPCN----TNALIAMKNAPDIPPDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHS-PTQYPDFTNATIGGKPA 203 (322)
T ss_pred CcHH----HHHHHHHHHcCCCChHheEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCc-ccEEEehhhcEECCEeH
Confidence 9999 8888899999 59999999999999999999999999999999998 5699996 69999999998754
Q ss_pred --CCChhH--HHHHHHHHhcCccceeeccCCCCchhHHHH-HHHHHHHHHHHhccCCCCCeeEee-eecCCCC--CccEE
Q 023853 157 --SLTPTE--IDYLTDRIQNGGTEVVEAKTGAGSATLSMA-YAAAKFADACLRGLRGDAGVIECA-YVASTVT--ELPFF 228 (276)
Q Consensus 157 --~~~~~~--~~~i~~~v~~~~~~ii~~k~gkg~~~~s~A-~a~~~li~ai~~~~~~~~~~~~~s-~~~~~y~--~~~~~ 228 (276)
.+++.+ +++|.+++++++++|++. ||+++|++| +++++++++|+++.+ ++.++||| +++|+|+ +++||
T Consensus 204 ~~~~~~~~~~~~~i~~~v~~~g~~Ii~~---kG~t~~~~~a~a~~~iv~ail~~~~-~~~i~~~sv~~~g~yg~~~~v~~ 279 (322)
T cd01338 204 AEVINDRAWLEDEFIPTVQKRGAAIIKA---RGASSAASAANAAIDHMRDWVLGTP-EGDWFSMAVPSDGSYGIPEGLIF 279 (322)
T ss_pred HHhcChHhhHHHHHHHHHHhhHHHHHhC---cCCccHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEEccCccCCCCCeEE
Confidence 245543 579999999999999995 589999999 599999999999632 14789998 6688884 78999
Q ss_pred EEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 023853 229 ASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGV 271 (276)
Q Consensus 229 s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~i~~~~~~~~ 271 (276)
|+||++|++|+++++++ +|+++|+++|++|++.|+++.++++
T Consensus 280 s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~l~~~~~~~~ 321 (322)
T cd01338 280 SFPVRSKGGGYEIVEGL-EIDDFAREKIDATLAELLEEREAVK 321 (322)
T ss_pred EEEEEEeCCEEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998 9999999999999999999987754
No 24
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=100.00 E-value=7.9e-57 Score=409.92 Aligned_cols=239 Identities=31% Similarity=0.531 Sum_probs=223.5
Q ss_pred ceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHc
Q 023853 19 GFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV 98 (276)
Q Consensus 19 ~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d~~~~v~t~~~~~~ 98 (276)
.+..++|++ +++|||+||+++|.|+++|++|++++..|+++++++++.|.+++|++++|++|||+| ++|+++++.
T Consensus 57 ~i~~t~d~~-~~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~d----i~t~~~~~~ 131 (305)
T TIGR01763 57 KVTGTNNYA-DTANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLD----AMTYVAWQK 131 (305)
T ss_pred EEEecCCHH-HhCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHH
Confidence 577789997 599999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCCCCCCEEEE-eechHHHHHHHHHHHhCCCCCCceeeEEeecCCCeeeecccCCCCCC-----CCChhHHHHHHHHHhc
Q 023853 99 GTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----SLTPTEIDYLTDRIQN 172 (276)
Q Consensus 99 ~~~~~~rviG~-t~lds~R~~~~la~~l~v~~~~v~~~ViG~hgg~~~vp~~s~~~~~~-----~~~~~~~~~i~~~v~~ 172 (276)
+|+|++||||+ |.|||+||+++||++|++++++|+++|||||| ++++|+||++++.+ .++++.+++|.+++++
T Consensus 132 sg~~~~rviG~g~~lds~R~~~~la~~l~v~~~~v~~~v~GeHg-~s~~~~wS~~~i~g~~~~~~~~~~~~~~l~~~v~~ 210 (305)
T TIGR01763 132 SGFPKERVIGQAGVLDSARFRTFIAMELGVSVQDVTACVLGGHG-DAMVPLVRYSTVAGIPVADLISAERIAEIVERTRK 210 (305)
T ss_pred HCcCHHHEEEeccchHHHHHHHHHHHHhCcCHHHeeeeEEecCC-CcEEeeeeeeEECCEEHHHhcCHHHHHHHHHHHHH
Confidence 99999999999 69999999999999999999999999999996 79999999998765 2445568999999999
Q ss_pred CccceeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEee-eecCCCC-CccEEEEeEEEcCCceEEEccCCCCCH
Q 023853 173 GGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT-ELPFFASKVRLGRAGIEEIYSLGPLNE 250 (276)
Q Consensus 173 ~~~~ii~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s-~~~~~y~-~~~~~s~Pv~ig~~Gv~~i~~~~~L~~ 250 (276)
+|++|++++ |||+|+||+|+++++++++|+++ ++.++|+| +++|+|+ +++|+|+||+||++|+++++++ +|++
T Consensus 211 ~g~~ii~~~-~kg~t~~~~a~~~~~i~~ai~~~---~~~v~~~s~~~~~~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~ 285 (305)
T TIGR01763 211 GGGEIVNLL-KQGSAYYAPAASVVEMVEAILKD---RKRVLPCAAYLDGQYGIDGIYVGVPVILGKNGVEHIYEL-KLDQ 285 (305)
T ss_pred HHHHHHHhc-CCCChHHHHHHHHHHHHHHHhCC---CCeEEEEEEEecccCCCCceEEEEEEEEeCCeEEEEeCC-CCCH
Confidence 999999986 78999999999999999999995 78899998 6788885 7899999999999999999998 9999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023853 251 YERAGLEKAKKELAGSIQ 268 (276)
Q Consensus 251 ~E~~~l~~sa~~i~~~~~ 268 (276)
+|+++|++|++.|++.++
T Consensus 286 ~E~~~l~~s~~~i~~~~~ 303 (305)
T TIGR01763 286 SELALLNKSAKIVDENCK 303 (305)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999998875
No 25
>PTZ00117 malate dehydrogenase; Provisional
Probab=100.00 E-value=3.5e-56 Score=408.14 Aligned_cols=257 Identities=30% Similarity=0.485 Sum_probs=234.4
Q ss_pred ccccccCCccc--ccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCC
Q 023853 6 AQNKFDVDSRA--VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 83 (276)
Q Consensus 6 ~~~~~d~~~~~--~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP 83 (276)
+|+++|++... ...++.++||+ +++|||+||+++|.++++|++|.+++..|.++++++++.|++++|++|+|++|||
T Consensus 46 ~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP 124 (319)
T PTZ00117 46 ALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNP 124 (319)
T ss_pred HHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCh
Confidence 46777765432 23677788998 8999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHcCCCCCCCEEEE-eechHHHHHHHHHHHhCCCCCCceeeEEeecCCCeeeecccCCCCCC------
Q 023853 84 VNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC------ 156 (276)
Q Consensus 84 ~d~~~~v~t~~~~~~~~~~~~rviG~-t~lds~R~~~~la~~l~v~~~~v~~~ViG~hgg~~~vp~~s~~~~~~------ 156 (276)
+| ++++++++.+++|++||||+ |.||++||+++||+++|+++++|+++|+|||| ++++|+||++++++
T Consensus 125 ~d----i~t~~~~~~s~~p~~rviG~gt~lds~R~~~~la~~l~v~~~~v~~~viGeHg-~~~v~~~s~~~v~g~p~~~~ 199 (319)
T PTZ00117 125 LD----CMVKVFQEKSGIPSNKICGMAGVLDSSRFRCNLAEKLGVSPGDVSAVVIGGHG-DLMVPLPRYCTVNGIPLSDF 199 (319)
T ss_pred HH----HHHHHHHHhhCCCcccEEEecchHHHHHHHHHHHHHhCCCcccceEEEeecCC-CcEEeceeeceECCEEHHHH
Confidence 99 88999999999999999999 69999999999999999999999999999996 79999999998654
Q ss_pred ----CCChhHHHHHHHHHhcCccceeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEee-eecCCCC-CccEEEE
Q 023853 157 ----SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT-ELPFFAS 230 (276)
Q Consensus 157 ----~~~~~~~~~i~~~v~~~~~~ii~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s-~~~~~y~-~~~~~s~ 230 (276)
.+++++++++.++++++|+++++++ |||+++||+|+++++++++|+++ ++.++|+| +++|+|+ +++|||+
T Consensus 200 ~~~~~~~~~~~~~i~~~v~~~g~~ii~~~-~kg~t~~~~a~a~~~~~~ail~~---~~~v~~~s~~~~g~yg~~~~~~s~ 275 (319)
T PTZ00117 200 VKKGAITEKEINEIIKKTRNMGGEIVKLL-KKGSAFFAPAAAIVAMIEAYLKD---EKRVLVCSVYLNGQYNCKNLFVGV 275 (319)
T ss_pred hhccccCHHHHHHHHHHHHHHHHHHHhhc-CCCChHHHHHHHHHHHHHHHhcC---CCeEEEEEEEeccccCCCCeEEEE
Confidence 2456678899999999999999976 78999999999999999999995 78899998 6788995 5899999
Q ss_pred eEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Q 023853 231 KVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSF 273 (276)
Q Consensus 231 Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~i~~~~~~~~~~ 273 (276)
||+||++|+++++++ +|+++|+++|++|++.|++.+++....
T Consensus 276 P~~ig~~Gv~~i~~l-~l~~~E~~~l~~s~~~l~~~~~~~~~~ 317 (319)
T PTZ00117 276 PVVIGGKGIEKVIEL-ELNAEEKELFDKSIESIQELTQKAKAL 317 (319)
T ss_pred EEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998 999999999999999999999877654
No 26
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=9.2e-57 Score=423.36 Aligned_cols=254 Identities=16% Similarity=0.143 Sum_probs=226.1
Q ss_pred cccccccCCcccccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC--CcEEEEecC
Q 023853 5 LAQNKFDVDSRAVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP--KAIVNLISN 82 (276)
Q Consensus 5 ~~~~~~d~~~~~~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p--~~~vivvtN 82 (276)
.+||++||++|+++.+..+++..++++|||+||+++|.||++||+|.|++..|++|++++++.|++++| ++++|++||
T Consensus 172 ~amDL~D~a~pll~~v~i~~~~~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tN 251 (452)
T cd05295 172 LVMEVEDLAFPLLRGISVTTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRT 251 (452)
T ss_pred HHHHHHHhHHhhcCCcEEEECCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence 589999999999987666655557999999999999999999999999999999999999999999999 899999999
Q ss_pred CCCCcHHHHHHHHHHcC-CCCCCCEEEEeechHHHHHHHHHHHhCCCCCCce-eeEEeecCCCeeeecccCCCCCC----
Q 023853 83 PVNSTVPIAAEVFKKVG-TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSC---- 156 (276)
Q Consensus 83 P~d~~~~v~t~~~~~~~-~~~~~rviG~t~lds~R~~~~la~~l~v~~~~v~-~~ViG~hgg~~~vp~~s~~~~~~---- 156 (276)
|+| ++|+++++.+ |+|++||||++.||++||+++||+++||++++|+ ++|||||| +++||+||++++.+
T Consensus 252 PvD----~~t~i~~k~apgiP~~rVig~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG-~sqvpd~S~a~V~G~~~a 326 (452)
T cd05295 252 FLN----LKTSILIKYAPSIPRKNIIAVARLQENRAKALLARKLNVNSAGIKDVIVWGNIG-GNTYIDLSKARVYRYDSA 326 (452)
T ss_pred cHH----HHHHHHHHHcCCCCHHHEEEecchHHHHHHHHHHHHhCcCHHHceeeEEEEccC-CceeeeeeEEEEcccccc
Confidence 999 7887888888 9999999999768899999999999999999995 79999996 79999999998743
Q ss_pred -------------CCChhHH--HHHHHHHhcCccceeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEee-eecC
Q 023853 157 -------------SLTPTEI--DYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVAS 220 (276)
Q Consensus 157 -------------~~~~~~~--~~i~~~v~~~~~~ii~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s-~~~~ 220 (276)
.+++++| +++.+.++++++ + +||+|.||+|.++++++++|+++.+ ++.++|+| +++|
T Consensus 327 ~~~p~~~~~pl~e~i~d~~w~~~~~~~~v~~rg~---~---rkgsT~~siA~A~~~iv~ail~~t~-~~~ilsvsv~sdG 399 (452)
T cd05295 327 IWGPPNYSRPVLELVHDSKWINGEFVATLKSLSS---S---LNHEAAISPAHAIATTLSYWYHGSP-PGEIFSLGVISEG 399 (452)
T ss_pred cccccccCccHHHHhcchhhhHHHHHHHHHHHHH---h---ccCChHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEeecc
Confidence 1233343 678888898887 3 4689999999999999999999632 25789998 6788
Q ss_pred CCC--CccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 023853 221 TVT--ELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGV 271 (276)
Q Consensus 221 ~y~--~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~i~~~~~~~~ 271 (276)
+|+ ++++||+||++|++|++.+.++ +|+++|+++|++|+++|+++.+.++
T Consensus 400 ~YGip~gv~~S~Pviig~~Gve~V~~L-~L~e~E~~kL~~S~~eL~~E~~~~~ 451 (452)
T cd05295 400 WYGIPEGIVFSMPVKFQNGSWEVVTDL-ELSEILREVLKRITSDLIQEKLVAL 451 (452)
T ss_pred ccCCcCCEEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 994 7999999999999999999998 9999999999999999999887663
No 27
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.2e-55 Score=405.11 Aligned_cols=257 Identities=22% Similarity=0.315 Sum_probs=231.1
Q ss_pred cccccccCCcccccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCcEEEEecCC
Q 023853 5 LAQNKFDVDSRAVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNP 83 (276)
Q Consensus 5 ~~~~~~d~~~~~~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~~~vivvtNP 83 (276)
.+|+++|++.|....+..+.++.++++|||+||++||.+++++++|.+++..|++|++++++.|++++ |++++|++|||
T Consensus 51 ~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNP 130 (325)
T cd01336 51 VVMELQDCAFPLLKSVVATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNP 130 (325)
T ss_pred eeeehhhccccccCCceecCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCc
Confidence 47899999988888887778877799999999999999999999999999999999999999999997 79999999999
Q ss_pred CCCcHHHHHHHHHHc-CCCCCCCEEEE-eechHHHHHHHHHHHhCCCCCCce-eeEEeecCCCeeeecccCCCCC----C
Q 023853 84 VNSTVPIAAEVFKKV-GTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPS----C 156 (276)
Q Consensus 84 ~d~~~~v~t~~~~~~-~~~~~~rviG~-t~lds~R~~~~la~~l~v~~~~v~-~~ViG~hgg~~~vp~~s~~~~~----~ 156 (276)
+| ++|+++++. +++|+++ ||+ |.||++|||++||+++++++++|+ .+|||||| ++++|+||++++. +
T Consensus 131 vD----~~t~~~~k~~~~~~~~~-ig~gt~LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG-~s~~~~~S~~~v~~~~~g 204 (325)
T cd01336 131 AN----TNALILLKYAPSIPKEN-FTALTRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHS-STQYPDVNHATVELNGKG 204 (325)
T ss_pred HH----HHHHHHHHHcCCCCHHH-EEeeehHHHHHHHHHHHHHhCcChhhceEeEEEEcCC-CCeeeccccceeecCCCC
Confidence 99 888888998 5777777 888 999999999999999999999997 56999997 6999999999886 4
Q ss_pred -----CCChhH--HHHHHHHHhcCccceeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEee-eecCCCC--Ccc
Q 023853 157 -----SLTPTE--IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT--ELP 226 (276)
Q Consensus 157 -----~~~~~~--~~~i~~~v~~~~~~ii~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s-~~~~~y~--~~~ 226 (276)
.++++. +++|.+++++++++|++.+ +|+|+||+|.++++++++|+++.+ ++.++||| +++|+|+ +++
T Consensus 205 ~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~~--~g~t~~~~a~~~~~i~~ail~~~~-~~~v~~vs~~~~g~yg~~~~v 281 (325)
T cd01336 205 KPAREAVKDDAWLNGEFISTVQKRGAAVIKAR--KLSSAMSAAKAICDHVHDWWFGTP-EGEFVSMGVYSDGSYGVPEGL 281 (325)
T ss_pred ccHHHHhcccchhHHHHHHHHHhhHHHHHHcc--ccchHHHHHHHHHHHHHHHHcCCC-CCeEEEEEEecCCCcCCCCce
Confidence 133333 5899999999999999964 579999999999999999999521 37899998 6788984 789
Q ss_pred EEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 023853 227 FFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGV 271 (276)
Q Consensus 227 ~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~i~~~~~~~~ 271 (276)
|||+||+||++|+++++++ +|+++|+++|++|++.|+++++.++
T Consensus 282 ~~s~P~~ig~~Gv~~i~~~-~L~~~E~~~l~~s~~~l~~e~~~~~ 325 (325)
T cd01336 282 IFSFPVTCKNGKWKIVQGL-SIDDFSREKIDATAKELVEEKETAL 325 (325)
T ss_pred EEEEEEEEeCCEEEEecCC-CCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999998 9999999999999999999998764
No 28
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=5.4e-55 Score=380.07 Aligned_cols=263 Identities=71% Similarity=1.108 Sum_probs=252.3
Q ss_pred CcccccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHH
Q 023853 13 DSRAVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAA 92 (276)
Q Consensus 13 ~~~~~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d~~~~v~t 92 (276)
+...+++|.+.+.+++++++||+|||.||.||||||+|+|||..|+.|+++++..+.++||++.+.++|||+|.++|+++
T Consensus 77 T~s~V~g~~g~~~L~~al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaa 156 (345)
T KOG1494|consen 77 TNSSVVGFTGADGLENALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAA 156 (345)
T ss_pred CCCceeccCChhHHHHHhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCEEEEeechHHHHHHHHHHHhCCCC-CCceeeEEeecCCCeeeecccCCCCCCCCChhHHHHHHHHHh
Q 023853 93 EVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDP-REVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQ 171 (276)
Q Consensus 93 ~~~~~~~~~~~~rviG~t~lds~R~~~~la~~l~v~~-~~v~~~ViG~hgg~~~vp~~s~~~~~~~~~~~~~~~i~~~v~ 171 (276)
+++++.+-|+|+|++|+|.||..|+++++++.++++| .+++++|+|+|.|.|.+|++|+..+...+++++++.++.+++
T Consensus 157 evlKk~G~ydpkklfGVTtLDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~RiQ 236 (345)
T KOG1494|consen 157 EVLKKAGVYDPKKLFGVTTLDVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHRIQ 236 (345)
T ss_pred HHHHHcCCCCccceeceehhhhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 559999999999999999999999877889999999999999
Q ss_pred cCccceeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEeeeecCCCCCccEEEEeEEEcCCceEEEccCCCCCHH
Q 023853 172 NGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEY 251 (276)
Q Consensus 172 ~~~~~ii~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s~~~~~y~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~ 251 (276)
.+|.|+.+.|.|+||+.+|+|+|.+++..+++++++|+..+..|+++.....+-.||+.|+++|++|++++..+++|+++
T Consensus 237 ~gGtEVV~AKaGaGSATLSMAyAga~fa~s~lrgl~G~~~v~ecafV~s~~~~~~fFaspv~Lg~~Gv~~v~~l~~lsd~ 316 (345)
T KOG1494|consen 237 NGGTEVVKAKAGAGSATLSMAYAGAKFADSLLRGLNGDEDVVECAFVASPVTELPFFATPVTLGKKGVEEVLGLGKLSDY 316 (345)
T ss_pred hCCceEEEeccCCCchhhhHHHHHHHHHHHHHHHhCCCCCeEEEeEEeccccCccceeceEEecCCceeeecCCCccCHH
Confidence 99999999999999999999999999999999999999999999988775435679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 023853 252 ERAGLEKAKKELAGSIQKGVSFVR 275 (276)
Q Consensus 252 E~~~l~~sa~~i~~~~~~~~~~~~ 275 (276)
|++.|+.+..+|++.|+++.+|++
T Consensus 317 E~~~l~~~~~eLk~sI~KGv~F~~ 340 (345)
T KOG1494|consen 317 EEKALEAAKPELKKSIEKGVTFVK 340 (345)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHh
Confidence 999999999999999999999986
No 29
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=3.3e-55 Score=401.58 Aligned_cols=240 Identities=32% Similarity=0.589 Sum_probs=224.3
Q ss_pred cceecCCCHHhhcCCCcEEEEcCCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHH
Q 023853 18 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGM-----TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAA 92 (276)
Q Consensus 18 ~~i~~~~d~~~al~daDiVii~ag~~~k~g~-----~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d~~~~v~t 92 (276)
..|..++|++ +++|||+||+++|.++++|+ +|++++..|+++++++++.|++++|++++|++|||+| +++
T Consensus 61 ~~I~~~~d~~-~l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~d----i~t 135 (321)
T PTZ00082 61 SKVIGTNNYE-DIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLD----VMV 135 (321)
T ss_pred eEEEECCCHH-HhCCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHH
Confidence 3577889996 89999999999999999999 9999999999999999999999999999999999999 899
Q ss_pred HHHHHcCCCCCCCEEEE-eechHHHHHHHHHHHhCCCCCCceeeEEeecCCCeeeecccCCCCCC----------CCChh
Q 023853 93 EVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPT 161 (276)
Q Consensus 93 ~~~~~~~~~~~~rviG~-t~lds~R~~~~la~~l~v~~~~v~~~ViG~hgg~~~vp~~s~~~~~~----------~~~~~ 161 (276)
+++++.+++|++||||+ |.||++|+++.||+++|+++++|+++|+|||| ++++|+||++++.+ .++++
T Consensus 136 ~~~~~~sg~p~~rviGlgt~lds~R~~~~la~~l~v~~~~v~~~viGeHg-~s~v~~~S~~~i~g~~~~~~~~~~~~~~~ 214 (321)
T PTZ00082 136 KLLQEHSGLPKNKVCGMAGVLDSSRLRTYIAEKLGVNPRDVHASVIGAHG-DKMVPLPRYVTVGGIPLSEFIKKGLITQE 214 (321)
T ss_pred HHHHHhcCCChhhEEEecCcccHHHHHHHHHHHhCCCcccceeeEEecCC-CceEecceeeEECCEEHHHhhhcccCCHH
Confidence 99999999999999999 69999999999999999999999999999995 79999999998754 14566
Q ss_pred HHHHHHHHHhcCccceeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEee-eecCCCC-CccEEEEeEEEcCCce
Q 023853 162 EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT-ELPFFASKVRLGRAGI 239 (276)
Q Consensus 162 ~~~~i~~~v~~~~~~ii~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s-~~~~~y~-~~~~~s~Pv~ig~~Gv 239 (276)
++++|.++++++|++|++++ |||+|+||+|.++++++++|+++ ++.++||| +++|+|+ +++|+|+||+||++|+
T Consensus 215 ~~~~i~~~~~~~g~~i~~~~-gkg~t~~~ia~a~~~i~~ail~d---~~~v~~vs~~~~g~yg~~~v~~s~P~~ig~~Gv 290 (321)
T PTZ00082 215 EIDEIVERTRNTGKEIVDLL-GTGSAYFAPAAAAIEMAEAYLKD---KKRVLPCSAYLEGQYGHKDIYMGTPAVIGANGV 290 (321)
T ss_pred HHHHHHHHHHHHHHHHHhhc-CCCccHHHHHHHHHHHHHHHHcC---CCcEEEEEEEecccCCCCCeEEEEEEEEeCCeE
Confidence 78999999999999999986 78999999999999999999995 88999998 7788896 6899999999999999
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHHHHHHH
Q 023853 240 EEIYSLGPLNEYERAGLEKAKKELAGSIQ 268 (276)
Q Consensus 240 ~~i~~~~~L~~~E~~~l~~sa~~i~~~~~ 268 (276)
++++++ +|+++|+++|++|++.|++.++
T Consensus 291 ~~i~~~-~l~~~E~~~l~~sa~~i~~~~~ 318 (321)
T PTZ00082 291 EKIIEL-DLTPEEQKKFDESIKEVKRLEA 318 (321)
T ss_pred EEEeCC-CCCHHHHHHHHHHHHHHHHHHh
Confidence 999998 9999999999999999998764
No 30
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=4.6e-55 Score=399.16 Aligned_cols=251 Identities=26% Similarity=0.404 Sum_probs=224.3
Q ss_pred ccccccCCcccccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 023853 6 AQNKFDVDSRAVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 85 (276)
Q Consensus 6 ~~~~~d~~~~~~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d 85 (276)
++.+.|+....-.....++|++ +++|||+||+++|.++++|++|++++.+|+++++++++.+++++|+|+++++|||+|
T Consensus 42 a~dl~~~~~~~~~~~i~~~d~~-~l~~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d 120 (308)
T cd05292 42 AMDLAHGTPFVKPVRIYAGDYA-DCKGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVD 120 (308)
T ss_pred HHHHHccccccCCeEEeeCCHH-HhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH
Confidence 4556676422211122357885 799999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHcCCCCCCCEEEE-eechHHHHHHHHHHHhCCCCCCceeeEEeecCCCeeeecccCCCCCC--------
Q 023853 86 STVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-------- 156 (276)
Q Consensus 86 ~~~~v~t~~~~~~~~~~~~rviG~-t~lds~R~~~~la~~l~v~~~~v~~~ViG~hgg~~~vp~~s~~~~~~-------- 156 (276)
++++++++.+|||++||||+ |.|||+||+++||+++++++++|+++|||||| ++++|+||++++++
T Consensus 121 ----~~~~~~~~~sg~p~~~viG~gt~LDs~R~~~~la~~~~v~~~~v~~~viGeHg-~~~~~~~S~~~v~g~~~~~~~~ 195 (308)
T cd05292 121 ----VLTYVAYKLSGLPPNRVIGSGTVLDTARFRYLLGEHLGVDPRSVHAYIIGEHG-DSEVAVWSSANIGGVPLDEFCK 195 (308)
T ss_pred ----HHHHHHHHHHCcCHHHeecccchhhHHHHHHHHHHHhCCCccceeceeeccCC-CcEEecceeeeECCEEHHHHhh
Confidence 89999999999999999999 89999999999999999999999999999996 79999999997654
Q ss_pred ----CCChhHHHHHHHHHhcCccceeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEee-eecCCCC-CccEEEE
Q 023853 157 ----SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT-ELPFFAS 230 (276)
Q Consensus 157 ----~~~~~~~~~i~~~v~~~~~~ii~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s-~~~~~y~-~~~~~s~ 230 (276)
.++++++++|.+++++++++|++. ||+|+|++|+++++++++|+++ ++.++||| +++|+|+ +++|||+
T Consensus 196 ~~~~~~~~~~~~~l~~~v~~~g~~ii~~---kg~t~~~~a~a~~~i~~ail~~---~~~v~~~s~~~~g~yg~~~~~~s~ 269 (308)
T cd05292 196 LCGRPFDEEVREEIFEEVRNAAYEIIER---KGATYYAIGLALARIVEAILRD---ENSVLTVSSLLDGQYGIKDVALSL 269 (308)
T ss_pred hcccccCHHHHHHHHHHHHHHHHHHHHc---CCccHHHHHHHHHHHHHHHHcC---CCcEEEEEEEEcccCCCCCEEEEE
Confidence 233456889999999999999995 5899999999999999999985 78899998 6788885 6899999
Q ss_pred eEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 023853 231 KVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQK 269 (276)
Q Consensus 231 Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~i~~~~~~ 269 (276)
||+||++|+++++++ +|+++|+++|++|++.|++.++.
T Consensus 270 P~~ig~~Gv~~i~~~-~L~~~E~~~l~~s~~~i~~~~~~ 307 (308)
T cd05292 270 PCIVGRSGVERVLPP-PLSEEEEEALRASAEVLKEAIES 307 (308)
T ss_pred EEEEeCCceEEecCC-CCCHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999998 99999999999999999988763
No 31
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=100.00 E-value=6.7e-54 Score=391.46 Aligned_cols=252 Identities=26% Similarity=0.435 Sum_probs=226.8
Q ss_pred cccccccC--CcccccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecC
Q 023853 5 LAQNKFDV--DSRAVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 82 (276)
Q Consensus 5 ~~~~~~d~--~~~~~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtN 82 (276)
.+|+++|+ ..+....++.++|++ +++|||+||+++|.|+++|++|.+++..|+++++++++.|++++|++++||++|
T Consensus 44 ~~~dl~d~~~~~~~~~~i~~~~d~~-~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~n 122 (309)
T cd05294 44 LRLDIYDALAAAGIDAEIKISSDLS-DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTN 122 (309)
T ss_pred ccchhhhchhccCCCcEEEECCCHH-HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 46788886 333334677788886 699999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEE-eechHHHHHHHHHHHhCCCCCCceeeEEeecCCCeeeecccCCCCCC-----
Q 023853 83 PVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----- 156 (276)
Q Consensus 83 P~d~~~~v~t~~~~~~~~~~~~rviG~-t~lds~R~~~~la~~l~v~~~~v~~~ViG~hgg~~~vp~~s~~~~~~----- 156 (276)
|+| ++|+++++.+|+|++||||+ |.||++||+++||+++++++++|+++|+|||| ++++|+||++++.+
T Consensus 123 pvd----~~t~~~~~~~g~~~~~viG~gt~LDs~R~~~~la~~l~v~~~~v~~~viGeHg-~s~~~~~S~~~i~g~~~~~ 197 (309)
T cd05294 123 PVD----VMTYKALKESGFDKNRVFGLGTHLDSLRFKVAIAKHFNVHISEVHTRIIGEHG-DSMVPLISSTSIGGIPIKR 197 (309)
T ss_pred chH----HHHHHHHHhcCCCHHHEeeccchHHHHHHHHHHHHHHCcChHHeEEEEEecCC-CceEeeeeecEECCEEHHH
Confidence 999 89999999999999999999 89999999999999999999999999999996 79999999998764
Q ss_pred CC--ChhHHHHHHHHHhcCccceeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEee-eecCCC-C-CccEEEEe
Q 023853 157 SL--TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-T-ELPFFASK 231 (276)
Q Consensus 157 ~~--~~~~~~~i~~~v~~~~~~ii~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s-~~~~~y-~-~~~~~s~P 231 (276)
.+ .+.+++++.++++++|++|++.| |+++||+|.++++++++|+++ ++.++|++ +.+|+| + +++++|+|
T Consensus 198 ~~~~~~~~~~~i~~~v~~~g~~i~~~k---g~t~~~~a~~~~~ii~ail~~---~~~v~~vsv~~~g~~~~~~~~~~svP 271 (309)
T cd05294 198 FPEYKDFDVEKIVETVKNAGQNIISLK---GGSEYGPASAISNLVRTIAND---ERRILTVSTYLEGEIDGIRDVCIGVP 271 (309)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHhc---CCchhhHHHHHHHHHHHHHCC---CCeEEEEEEEECCccCCCCCeEEEeE
Confidence 12 24557899999999999999964 678999999999999999985 78899998 557777 3 48999999
Q ss_pred EEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 023853 232 VRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQK 269 (276)
Q Consensus 232 v~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~i~~~~~~ 269 (276)
|+||++|+++++++ +|+++|+++|++|++.|++.++.
T Consensus 272 ~~ig~~Gv~~i~~l-~l~~~E~~~l~~s~~~i~~~~~~ 308 (309)
T cd05294 272 VKLGKNGIEEIVPI-EMDDDEREAFRKSAEIVKKYTRE 308 (309)
T ss_pred EEEcCCccEEEeCC-CCCHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999998 99999999999999999987653
No 32
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=100.00 E-value=6.5e-54 Score=390.38 Aligned_cols=250 Identities=34% Similarity=0.553 Sum_probs=227.7
Q ss_pred cccccCCcccc--cceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 023853 7 QNKFDVDSRAV--RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 84 (276)
Q Consensus 7 ~~~~d~~~~~~--~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~ 84 (276)
|+++|+..+.. ..++.++|++ +++|||+||+++|.|+++|++|.+++..|+++++++++.|++++|++++|++|||+
T Consensus 40 ~dl~~~~~~~~~~~~I~~t~d~~-~l~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~ 118 (300)
T cd01339 40 LDISQAAPILGSDTKVTGTNDYE-DIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPL 118 (300)
T ss_pred HHHHHhhhhcCCCeEEEEcCCHH-HhCCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 55666543332 3577778886 79999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHcCCCCCCCEEEE-eechHHHHHHHHHHHhCCCCCCceeeEEeecCCCeeeecccCCCCCC-----CC
Q 023853 85 NSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----SL 158 (276)
Q Consensus 85 d~~~~v~t~~~~~~~~~~~~rviG~-t~lds~R~~~~la~~l~v~~~~v~~~ViG~hgg~~~vp~~s~~~~~~-----~~ 158 (276)
| ++++++++++|+||+||||+ |.||++||+++||++|++++++|+++|+|+|| ++++|+||++++++ .+
T Consensus 119 d----i~t~~~~~~s~~~~~rviGlgt~lds~r~~~~la~~l~v~~~~v~~~v~G~hg-~~~~~~~s~~~v~g~~~~~~~ 193 (300)
T cd01339 119 D----VMTYVAYKASGFPRNRVIGMAGVLDSARFRYFIAEELGVSVKDVQAMVLGGHG-DTMVPLPRYSTVGGIPLTELI 193 (300)
T ss_pred H----HHHHHHHHHhCCCHHHEEEecchHHHHHHHHHHHHHhCCCccceEEEEEeCCC-CcceecceecEECCEEHHHhc
Confidence 9 99999999999999999999 68999999999999999999999999999995 79999999998764 24
Q ss_pred ChhHHHHHHHHHhcCccceeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEee-eecCCCC-CccEEEEeEEEcC
Q 023853 159 TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT-ELPFFASKVRLGR 236 (276)
Q Consensus 159 ~~~~~~~i~~~v~~~~~~ii~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s-~~~~~y~-~~~~~s~Pv~ig~ 236 (276)
++++++++.++++++++++++.| |||+|+|++|+++++++++|+++ ++.++|++ +++|+|+ ++++||+||+||+
T Consensus 194 ~~~~~~~~~~~v~~~~~~ii~~k-~~g~t~~~~a~~~~~i~~ail~~---~~~i~~~s~~~~g~yg~~~~~~s~P~~ig~ 269 (300)
T cd01339 194 TKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAAIAEMVEAILKD---KKRVLPCSAYLEGEYGIKDIFVGVPVVLGK 269 (300)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHHHHHHHHHHHHcC---CCcEEEEEEEeccccCCCCeEEEEEEEEeC
Confidence 55568999999999999999987 78999999999999999999995 78999998 6788884 6899999999999
Q ss_pred CceEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 023853 237 AGIEEIYSLGPLNEYERAGLEKAKKELAGSI 267 (276)
Q Consensus 237 ~Gv~~i~~~~~L~~~E~~~l~~sa~~i~~~~ 267 (276)
+|+++++++ +|+++|+++|++|++.|++.+
T Consensus 270 ~G~~~~~~l-~l~~~E~~~l~~s~~~l~~~~ 299 (300)
T cd01339 270 NGVEKIIEL-DLTDEEKEAFDKSVESVKELI 299 (300)
T ss_pred CeEEEEeCC-CCCHHHHHHHHHHHHHHHHHh
Confidence 999999998 999999999999999999865
No 33
>PRK06223 malate dehydrogenase; Reviewed
Probab=100.00 E-value=2e-52 Score=381.56 Aligned_cols=253 Identities=33% Similarity=0.561 Sum_probs=229.0
Q ss_pred ccccccCCcccc--cceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCC
Q 023853 6 AQNKFDVDSRAV--RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 83 (276)
Q Consensus 6 ~~~~~d~~~~~~--~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP 83 (276)
+++++|+..+.. ..++.++|++ +++|||+||+++|.|+++|++|.+++.+|+++++++++.|++++|++++|++|||
T Consensus 43 ~~dl~~~~~~~~~~~~i~~~~d~~-~~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP 121 (307)
T PRK06223 43 ALDIAEAAPVEGFDTKITGTNDYE-DIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNP 121 (307)
T ss_pred HHHHHhhhhhcCCCcEEEeCCCHH-HHCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 456677655443 3466778995 7999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHcCCCCCCCEEEE-eechHHHHHHHHHHHhCCCCCCceeeEEeecCCCeeeecccCCCCCC-----C
Q 023853 84 VNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----S 157 (276)
Q Consensus 84 ~d~~~~v~t~~~~~~~~~~~~rviG~-t~lds~R~~~~la~~l~v~~~~v~~~ViG~hgg~~~vp~~s~~~~~~-----~ 157 (276)
+| ++|+++++.+|+|++||||+ |.|||+||+++||+++++++++|+++|+|+|| ++++|+||++++.+ .
T Consensus 122 ~d----~~~~~~~~~s~~~~~~viG~gt~lds~r~~~~la~~l~v~~~~v~~~viGehg-~s~~p~~S~~~v~g~~~~~~ 196 (307)
T PRK06223 122 VD----AMTYVALKESGFPKNRVIGMAGVLDSARFRTFIAEELNVSVKDVTAFVLGGHG-DSMVPLVRYSTVGGIPLEDL 196 (307)
T ss_pred HH----HHHHHHHHHhCCCcccEEEeCCCcHHHHHHHHHHHHhCcChhhCcccEEcCCC-CcceEchhhCEECCEEHHHh
Confidence 99 99999999999999999999 79999999999999999999999999999996 69999999998653 2
Q ss_pred CChhHHHHHHHHHhcCccceeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEee-eecCCCC-CccEEEEeEEEc
Q 023853 158 LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT-ELPFFASKVRLG 235 (276)
Q Consensus 158 ~~~~~~~~i~~~v~~~~~~ii~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s-~~~~~y~-~~~~~s~Pv~ig 235 (276)
++++.+++|.++++++++++++.+ +|+++.|++|.++++++++++.+ ++.++|++ +.+|+|+ ++++||+||+||
T Consensus 197 ~~~~~~~~l~~~v~~~~~~ii~~~-~kg~t~~~~A~~~~~ii~ail~~---~~~~~~~~v~~~g~yg~~~~~~s~P~~i~ 272 (307)
T PRK06223 197 LSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAPAASIAEMVEAILKD---KKRVLPCSAYLEGEYGVKDVYVGVPVKLG 272 (307)
T ss_pred CChHHHHHHHHHHHHHHHHHHhhc-ccCChhHHHHHHHHHHHHHHHcC---CCcEEEEEEEecCcCCCCCeEEEeEEEEe
Confidence 455567899999999999999974 57899999999999999999985 78899998 6688885 789999999999
Q ss_pred CCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 023853 236 RAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQK 269 (276)
Q Consensus 236 ~~Gv~~i~~~~~L~~~E~~~l~~sa~~i~~~~~~ 269 (276)
++|+++++++ +|+++|+++|++|+++|++.++.
T Consensus 273 ~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~ 305 (307)
T PRK06223 273 KNGVEKIIEL-ELDDEEKAAFDKSVEAVKKLIEA 305 (307)
T ss_pred CCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998 99999999999999999998865
No 34
>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=1.3e-49 Score=339.97 Aligned_cols=263 Identities=22% Similarity=0.322 Sum_probs=240.8
Q ss_pred cccccccCCcccccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCcEEEEecCC
Q 023853 5 LAQNKFDVDSRAVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNP 83 (276)
Q Consensus 5 ~~~~~~d~~~~~~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~~~vivvtNP 83 (276)
..||||||++|+|+++..++|..++|+|-|+.|+.+++||++||+|.|++..|.+|++..+..+.+|+ |+.+++|++||
T Consensus 53 V~mELqD~a~PlL~~Vvattd~~~afkdv~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNP 132 (332)
T KOG1496|consen 53 VKMELQDCALPLLKGVVATTDEVEAFKDVDVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNP 132 (332)
T ss_pred HHHHHHhhhhhHHHhhhcccChhhhhccCcEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCc
Confidence 46999999999999999999999999999999999999999999999999999999999999999998 88999999999
Q ss_pred CCCcHHHHHHHHHHcCCCCCCCEEEEeechHHHHHHHHHHHhCCCCCCce-eeEEeecCCCeeeecccCCCCCC------
Q 023853 84 VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSC------ 156 (276)
Q Consensus 84 ~d~~~~v~t~~~~~~~~~~~~rviG~t~lds~R~~~~la~~l~v~~~~v~-~~ViG~hgg~~~vp~~s~~~~~~------ 156 (276)
+|.++.++. +.++.+|.+++-++|.||.+|+..+||.++||+.++|+ ++|||||+ .||+|+.-+++++.
T Consensus 133 aNTNali~~---k~ApsIP~kNfs~lTRLDhNRA~~QlA~klgv~~~~VkNviIWGNHS-sTQyPD~~hA~V~~~~~~~~ 208 (332)
T KOG1496|consen 133 ANTNALILK---KFAPSIPEKNFSALTRLDHNRALAQLALKLGVPVSDVKNVIIWGNHS-STQYPDVNHATVNTNGGEKP 208 (332)
T ss_pred cccchhHHh---hhCCCCchhcchhhhhhchhhHHHHHHHhhCCchhhcceeEEecccc-cccCCCccceeeeccCCccc
Confidence 999998876 46789999999999999999999999999999999998 99999997 69999999998753
Q ss_pred ---CCChhHH--HHHHHHHhcCccceeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEee-eecCCC--CCccEE
Q 023853 157 ---SLTPTEI--DYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV--TELPFF 228 (276)
Q Consensus 157 ---~~~~~~~--~~i~~~v~~~~~~ii~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s-~~~~~y--~~~~~~ 228 (276)
.++|..| .++.+.|++||..+|+.+ |-|+.+|.|.++++++++|+.+.+ +...+..+ +.+|.| |++..|
T Consensus 209 v~e~v~d~~wL~g~Fi~tVQkRGaavi~ar--k~SSA~SaA~aacDhi~dw~~gTp-eG~fvSmgV~sDGsYgip~gli~ 285 (332)
T KOG1496|consen 209 VKEAVKDDAWLQGEFIETVQKRGAAVIKAR--KLSSAMSAAKAACDHIRDWWFGTP-EGTFVSMGVYSDGSYGIPDGLIF 285 (332)
T ss_pred HHHHhccchhhccchhhHHHhcchHhhhhh--hhhhhhhHHHhHhhhhhheecCCC-CccEEEEeeecCCCCCCCCCeEE
Confidence 3566677 689999999999999875 578999999999999999999876 44445555 568888 688999
Q ss_pred EEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023853 229 ASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 275 (276)
Q Consensus 229 s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~i~~~~~~~~~~~~ 275 (276)
|+||++ ++|-|++++..+++++-+++++.++++|+++-+.++..++
T Consensus 286 SfPv~~-k~g~wkiVqgl~iddf~r~km~~t~~EL~eEkd~a~~~l~ 331 (332)
T KOG1496|consen 286 SFPVTI-KNGDWKIVQGLPIDDFSREKMDLTAKELKEEKDLAYSCLS 331 (332)
T ss_pred EcceEe-cCCceEEEcCcchhHHHHHhhhhhHHHHHHhHHHHHHhhc
Confidence 999999 7899999998899999999999999999999999998876
No 35
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=100.00 E-value=7.6e-48 Score=344.41 Aligned_cols=217 Identities=28% Similarity=0.415 Sum_probs=201.3
Q ss_pred cccccccCCccc-ccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCC
Q 023853 5 LAQNKFDVDSRA-VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 83 (276)
Q Consensus 5 ~~~~~~d~~~~~-~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP 83 (276)
.+|+++|++.+. ..+++.++|++++++|||+||+++|.++++|++|.+++.+|+++++++++.+++++|++|+|++|||
T Consensus 42 ~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP 121 (263)
T cd00650 42 VAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNP 121 (263)
T ss_pred HHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 468889998886 5689899997789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHcCCCCCCCEEEEeechHHHHHHHHHHHhCCCCCCceeeEEeecCCCeeeecccCCCCCCCCChhHH
Q 023853 84 VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEI 163 (276)
Q Consensus 84 ~d~~~~v~t~~~~~~~~~~~~rviG~t~lds~R~~~~la~~l~v~~~~v~~~ViG~hgg~~~vp~~s~~~~~~~~~~~~~ 163 (276)
+| ++|+++++.+|+|++||||+|.+|+.|+++++|+++++++++|+++|||+|| ++++|+||+++
T Consensus 122 ~d----~~t~~~~~~sg~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G~hg-~~~~~~~s~~~---------- 186 (263)
T cd00650 122 VD----IITYLVWRYSGLPKEKVIGLGTLDPIRFRRILAEKLGVDPDDVKVYILGEHG-GSQVPDWSTVR---------- 186 (263)
T ss_pred HH----HHHHHHHHHhCCCchhEEEeecchHHHHHHHHHHHhCCCccceEEEEEEcCC-CceEeccccch----------
Confidence 99 8999999999999999999944999999999999999999999999999996 68999999964
Q ss_pred HHHHHHHhcCccceeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEee-eecCCCC--CccEEEEeEEEcCCceE
Q 023853 164 DYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT--ELPFFASKVRLGRAGIE 240 (276)
Q Consensus 164 ~~i~~~v~~~~~~ii~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s-~~~~~y~--~~~~~s~Pv~ig~~Gv~ 240 (276)
+|.++++++++|+++ ++.++|++ +.+|+|+ ++++||+||++|++|++
T Consensus 187 ---------------------------~a~~~~~ii~ai~~~---~~~~~~v~v~~~g~ygi~~~~~~s~P~~i~~~Gi~ 236 (263)
T cd00650 187 ---------------------------IATSIADLIRSLLND---EGEILPVGVRNNGQIGIPDDVVVSVPCIVGKNGVE 236 (263)
T ss_pred ---------------------------HHHHHHHHHHHHHcC---CCEEEEEEEEeCCccCCcCCEEEEEEEEEeCCceE
Confidence 678999999999995 77889998 5578885 78999999999999999
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHHH
Q 023853 241 EIYSLGPLNEYERAGLEKAKKELAGSI 267 (276)
Q Consensus 241 ~i~~~~~L~~~E~~~l~~sa~~i~~~~ 267 (276)
+++++ +|+++|+++|++|++.++..+
T Consensus 237 ~~~~~-~l~~~e~~~l~~s~~~~~~~~ 262 (263)
T cd00650 237 EPIEV-GLTDFELEKLQKSADTLKKEL 262 (263)
T ss_pred EEecC-CCCHHHHHHHHHHHHHHHHHh
Confidence 99997 999999999999999998765
No 36
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=100.00 E-value=1.9e-37 Score=261.20 Aligned_cols=159 Identities=36% Similarity=0.584 Sum_probs=144.9
Q ss_pred eechHHHHHHHHHHHhCCCCCCceeeEEeecCCCeeeecccCCCCCC-----------CCChhHHHHHHHHHhcCcccee
Q 023853 110 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----------SLTPTEIDYLTDRIQNGGTEVV 178 (276)
Q Consensus 110 t~lds~R~~~~la~~l~v~~~~v~~~ViG~hgg~~~vp~~s~~~~~~-----------~~~~~~~~~i~~~v~~~~~~ii 178 (276)
|.||++|||++||+++|++|+++++||||||| +++||+||++++.+ .++++++++|.++++++|++++
T Consensus 1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeHg-~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii 79 (174)
T PF02866_consen 1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEHG-DSQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII 79 (174)
T ss_dssp THHHHHHHHHHHHHHHTSGGGGEEEEEEBSSS-TTEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCccceEEEEEecCC-cceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence 67999999999999999999999999999997 69999999998653 4667788999999999999999
Q ss_pred eccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEee-eecCCCC-Cc--cEEEEeEEEcCCceEEEccCCCCCHHHHH
Q 023853 179 EAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT-EL--PFFASKVRLGRAGIEEIYSLGPLNEYERA 254 (276)
Q Consensus 179 ~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s-~~~~~y~-~~--~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~ 254 (276)
+.| | |+++||+|+++++++++|+++ ++.++|++ +++|+|+ .+ +|||+||+||++|++++++.++|+++|++
T Consensus 80 ~~k-~-g~t~~s~A~a~~~~v~ail~~---~~~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~ 154 (174)
T PF02866_consen 80 KAK-G-GSTSYSIAAAAARIVEAILKD---ERRILPVSVYLDGEYGIPDGCVYFSVPVVIGKNGVEKIVEDLPLSEEEQE 154 (174)
T ss_dssp HHH-S-SSCHHHHHHHHHHHHHHHHTT---HTEEEEEEEEEESGGGEESSSEEEEEEEEEETTEEEEEECSBSSTHHHHH
T ss_pred eec-c-ccCcCCHHHHHHHHHHHHhhc---ccccccceeccccccCcccccceecceEEEcCCeeEEEeCCCCCCHHHHH
Confidence 976 3 899999999999999999996 67899998 6688885 34 99999999999999999993389999999
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 023853 255 GLEKAKKELAGSIQKGVSFV 274 (276)
Q Consensus 255 ~l~~sa~~i~~~~~~~~~~~ 274 (276)
+|++|++.|++.++++++|+
T Consensus 155 ~l~~sa~~l~~~i~~~~~f~ 174 (174)
T PF02866_consen 155 KLKESAKELKKEIEKGLEFV 174 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999985
No 37
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=99.94 E-value=2.7e-25 Score=210.51 Aligned_cols=224 Identities=21% Similarity=0.199 Sum_probs=162.9
Q ss_pred ceecCCCHHhhcCCCcEEEEcCCC------------CCCCCC--------CHHHHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 023853 19 GFLGQQQLEDALTGMDIVIIPAGV------------PRKPGM--------TRDDLFNINAGIVKTLCEGIAKCCPKAIVN 78 (276)
Q Consensus 19 ~i~~~~d~~~al~daDiVii~ag~------------~~k~g~--------~r~~~~~~N~~i~~~i~~~i~~~~p~~~vi 78 (276)
.|+.|+|+++|++|||+||.+... |.|.|. -......+|+++++++++.|+++||++|+|
T Consensus 61 ~v~~ttD~~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~li 140 (425)
T cd05197 61 KFEKTMDLEDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYL 140 (425)
T ss_pred EEEEeCCHHHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEE
Confidence 499999999999999999996432 234431 257778899999999999999999999999
Q ss_pred EecCCCCCcHHHHHHHHHHcCCCCCCCEEEEeechHHHHHHHHHHHhCCCCCCceeeEEe-ecCCCeeeecccCCCCC--
Q 023853 79 LISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-GHAGVTILPLLSQVKPS-- 155 (276)
Q Consensus 79 vvtNP~d~~~~v~t~~~~~~~~~~~~rviG~t~lds~R~~~~la~~l~v~~~~v~~~ViG-~hgg~~~vp~~s~~~~~-- 155 (276)
++|||+| ++|+++++.+ |+.||||+|.. +.|+++.+|+.+|+++++|+++++| ||| ++||+.+++
T Consensus 141 n~TNP~d----i~t~a~~~~~--p~~rviG~c~~-~~r~~~~ia~~lgv~~~~v~~~v~GlnHg-----~~~s~~~~~G~ 208 (425)
T cd05197 141 NFTNPAG----EVTEAVRRYV--PPEKAVGLCNV-PIGVMEIVAKLLGESEEKVDWQYAGLNHG-----IWLNRVRYNGG 208 (425)
T ss_pred ecCChHH----HHHHHHHHhC--CCCcEEEECCC-HHHHHHHHHHHhCCCHHHeEEEEEeccCe-----EeeEeEEECCe
Confidence 9999999 9999999884 78999999766 9999999999999999999999999 996 333332110
Q ss_pred -------------------------------------------C----C-CCh----h-------------H---H-HHH
Q 023853 156 -------------------------------------------C----S-LTP----T-------------E---I-DYL 166 (276)
Q Consensus 156 -------------------------------------------~----~-~~~----~-------------~---~-~~i 166 (276)
. + ..+ + + + +++
T Consensus 209 ~l~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l 288 (425)
T cd05197 209 DVTPKLDEWVEEKSKDWKTENPFVDQLSPAAIDFYRFYGVLPNPYLRYYLSWDKXRKLEADKEITWKTRADEVGKVEKEL 288 (425)
T ss_pred ecHHHHHHHHhccCccccccccccccccchHHHHHHhCCCcccCCccccCccchhhhhhHHhhcccCccHHHHHHHHHHH
Confidence 0 0 000 0 0 0 111
Q ss_pred HHHHhc---Cccc-eeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEeeeecCCC----CCccEEEEeEEEcCCc
Q 023853 167 TDRIQN---GGTE-VVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTV----TELPFFASKVRLGRAG 238 (276)
Q Consensus 167 ~~~v~~---~~~~-ii~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s~~~~~y----~~~~~~s~Pv~ig~~G 238 (276)
.+..+. .... -.. .++...|+. .++++++||.++ ++..+.+++.+.+. |++.++.+||+++++|
T Consensus 289 ~~~~~~~~~~~~~~~~~---~r~~~~~~e--~a~~ii~ai~~~---~~~~~~vNv~N~G~I~nLp~d~vVEvp~~v~~~G 360 (425)
T cd05197 289 FEVYKFIKENPSVVELI---KRGGRKYSE--AAIPLIRALLND---NGARFVVNTRNNGAIANIDDDVVVEVPCLVDKNG 360 (425)
T ss_pred HHHHhhhhhcCChhhhh---hcCCcccHH--HHHHHHHHHHcC---CCeEEEEECCCCCCCCCCCCCCEEEEeEEEcCCC
Confidence 111111 0000 010 112344555 889999999995 66777777766542 6889999999999999
Q ss_pred eEEEccCCCCCHHHHHHHHHHHHHH
Q 023853 239 IEEIYSLGPLNEYERAGLEKAKKEL 263 (276)
Q Consensus 239 v~~i~~~~~L~~~E~~~l~~sa~~i 263 (276)
+.++-- ++|++...++++.-...-
T Consensus 361 i~P~~v-g~lp~~~~~Li~~~~~~e 384 (425)
T cd05197 361 PHPIKV-GPLDRFVKGLLRQRKMRE 384 (425)
T ss_pred ceeccc-CCCCHHHHHHHHHHHHHH
Confidence 999644 589887777666544333
No 38
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=99.94 E-value=1.2e-25 Score=212.60 Aligned_cols=226 Identities=19% Similarity=0.249 Sum_probs=167.1
Q ss_pred ceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHH--------------------HHHHHHHHHHHHHHHHHhhCCCcEEE
Q 023853 19 GFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDD--------------------LFNINAGIVKTLCEGIAKCCPKAIVN 78 (276)
Q Consensus 19 ~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~--------------------~~~~N~~i~~~i~~~i~~~~p~~~vi 78 (276)
.|+.|+|+++|++|||+||++.+.+..+++++++ ...+|+++++++++.|+++||+||+|
T Consensus 62 ~v~~t~d~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~li 141 (419)
T cd05296 62 KVHLTTDRREALEGADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLI 141 (419)
T ss_pred EEEEeCCHHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEE
Confidence 4899999999999999999998887766666655 37899999999999999999999999
Q ss_pred EecCCCCCcHHHHHHHHHHcCCCCCCCEEEEeechHHHHHHHHHHHhCCCCCCceeeEEe-ecC---------CCeeeec
Q 023853 79 LISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-GHA---------GVTILPL 148 (276)
Q Consensus 79 vvtNP~d~~~~v~t~~~~~~~~~~~~rviG~t~lds~R~~~~la~~l~v~~~~v~~~ViG-~hg---------g~~~vp~ 148 (276)
++|||+| ++|+++++.+ ++||||+|.. +.|+++.+|+.+|+++++|+++|+| ||. |.+.+|.
T Consensus 142 n~TNP~~----ivt~a~~k~~---~~rviGlc~~-~~r~~~~ia~~lg~~~~~v~~~v~GlNH~~w~~~~~~~G~D~~p~ 213 (419)
T cd05296 142 NFTNPAG----IVTEAVLRHT---GDRVIGLCNV-PIGLQRRIAELLGVDPEDVFIDYAGLNHLGWLRRVLLDGEDVLPE 213 (419)
T ss_pred EecCHHH----HHHHHHHHhc---cCCEEeeCCc-HHHHHHHHHHHhCCCHHHceEEEEecccceeeeeeeECCcccHHH
Confidence 9999999 9999999886 7899999877 4799999999999999999999999 997 3444441
Q ss_pred ----------------ccCC-------CCCC----CC-Chh--------------HH----HHHHHHHhcCc----ccee
Q 023853 149 ----------------LSQV-------KPSC----SL-TPT--------------EI----DYLTDRIQNGG----TEVV 178 (276)
Q Consensus 149 ----------------~s~~-------~~~~----~~-~~~--------------~~----~~i~~~v~~~~----~~ii 178 (276)
|+.. .|.. .+ .++ .. +++.+..+... .+.+
T Consensus 214 l~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~r~e~~~~~~~~l~~~~~~~~~~~~~~~~ 293 (419)
T cd05296 214 LLEDLAALLSFEEGLLFGPELLRALGALPNEYLRYYYQTDEALEEILEAAGTRGEVVKEVEKELFELYKDPNLDEKPKEL 293 (419)
T ss_pred HHHHhhhccccccccchHHHHHHhcCCcccchHHHHCCcHHHHHHhhhhccchHHHHHHHHHHHHHHHhccccccChHhh
Confidence 1100 0111 01 111 11 12222222110 0011
Q ss_pred eccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEeeeecCCC----CCccEEEEeEEEcCCceEEEccCCCCCHHHHH
Q 023853 179 EAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTV----TELPFFASKVRLGRAGIEEIYSLGPLNEYERA 254 (276)
Q Consensus 179 ~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s~~~~~y----~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~ 254 (276)
. .++.+.|+. .++++++||+++ ++..+.+++.+.+. |++.++.+||.++++|+.++ ..++|++...+
T Consensus 294 ~---~r~g~~y~e--~a~~ii~ai~~~---~~~~~~vNv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~-~vg~lP~~~~~ 364 (419)
T cd05296 294 E---KRGGAGYSE--AALALISAIYND---KGDIHVVNVRNNGAIPGLPDDAVVEVPCVVDADGAHPL-PVGPLPPAILG 364 (419)
T ss_pred H---hhcCcchHH--HHHHHHHHHhcC---CCcEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceec-cCCCCCHHHHH
Confidence 1 123344555 889999999985 66777777665542 67899999999999999996 44589999887
Q ss_pred HHHHHHH
Q 023853 255 GLEKAKK 261 (276)
Q Consensus 255 ~l~~sa~ 261 (276)
++..-..
T Consensus 365 l~~~~~~ 371 (419)
T cd05296 365 LIQQVKA 371 (419)
T ss_pred HHHHHHH
Confidence 7655443
No 39
>PRK15076 alpha-galactosidase; Provisional
Probab=99.92 E-value=3.3e-24 Score=203.69 Aligned_cols=236 Identities=18% Similarity=0.211 Sum_probs=166.1
Q ss_pred cceecCCCHHhhcCCCcEEEEcCCCC-CCCC--------------CCHHHH--------HHHHHHHHHHHHHHHHhhCCC
Q 023853 18 RGFLGQQQLEDALTGMDIVIIPAGVP-RKPG--------------MTRDDL--------FNINAGIVKTLCEGIAKCCPK 74 (276)
Q Consensus 18 ~~i~~~~d~~~al~daDiVii~ag~~-~k~g--------------~~r~~~--------~~~N~~i~~~i~~~i~~~~p~ 74 (276)
..|+.|+|+.+|++|||+||++++.+ ++++ ++|.+. +.+|+++++++++.|+++||+
T Consensus 61 ~~i~~ttD~~eal~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~ 140 (431)
T PRK15076 61 AKITATTDRREALQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPD 140 (431)
T ss_pred eEEEEECCHHHHhCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCC
Confidence 35888999888999999999999886 4555 567777 999999999999999999999
Q ss_pred cEEEEecCCCCCcHHHHHHHHHHcCCCCCCCEEEEe--echHHHHHHHHHHHhCCCCCCceeeEEe-ecC---------C
Q 023853 75 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT--MLDVVRANTFVAEVLGLDPREVDVPVVG-GHA---------G 142 (276)
Q Consensus 75 ~~vivvtNP~d~~~~v~t~~~~~~~~~~~~rviG~t--~lds~R~~~~la~~l~v~~~~v~~~ViG-~hg---------g 142 (276)
||+|++|||+| ++|++++ ++|+.||||+| .+|+. +.+|+.+|+++++|++++.| ||. |
T Consensus 141 a~iin~tNP~d----ivt~~~~---~~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~~~~GlNH~~W~~~~~~~G 210 (431)
T PRK15076 141 ALLLNYVNPMA----MNTWAMN---RYPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRYRCAGINHMAWYLELERKG 210 (431)
T ss_pred eEEEEcCChHH----HHHHHHh---cCCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEEEEEeecchhhheeeeECC
Confidence 99999999999 9998887 67889999996 57775 77999999999999999999 886 3
Q ss_pred CeeeecccC---------CC-------------CC-------C---CC----ChhHHHHHH----HHHh------cCccc
Q 023853 143 VTILPLLSQ---------VK-------------PS-------C---SL----TPTEIDYLT----DRIQ------NGGTE 176 (276)
Q Consensus 143 ~~~vp~~s~---------~~-------------~~-------~---~~----~~~~~~~i~----~~v~------~~~~~ 176 (276)
.+.+|.... .. +. . .+ .++..+++. +..+ ....+
T Consensus 211 ~D~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~y~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 290 (431)
T PRK15076 211 EDLYPELRAAAAEGQTRCQDKVRYEMLKRFGYFVTESSEHFAEYVPWFIKPGRPDLIERFNIPLDEYPRRCEEQIANWEK 290 (431)
T ss_pred cchHHHHHHHHhccCchhcccccHHHHHHhCCCcccchhhhhhhhcccCcCCCHHHHHHhhcccchhhhhHHHHhhhHHH
Confidence 333332110 00 10 0 11 122211111 0000 00000
Q ss_pred ee-eccCCCCc--hhHHHHHHHHHHHHHHHhccCCCCCeeEeeeecCC----CCCccEEEEeEEEcCCceEEEccCCCCC
Q 023853 177 VV-EAKTGAGS--ATLSMAYAAAKFADACLRGLRGDAGVIECAYVAST----VTELPFFASKVRLGRAGIEEIYSLGPLN 249 (276)
Q Consensus 177 ii-~~k~gkg~--~~~s~A~a~~~li~ai~~~~~~~~~~~~~s~~~~~----y~~~~~~s~Pv~ig~~Gv~~i~~~~~L~ 249 (276)
.+ ....|+.. ..++ -.++++++||.++ ++.++.+++.+.+ .|+|.++.+||.++++|+.++.- ++|+
T Consensus 291 ~~~~~~~~~~~~~~~~~--e~a~~ii~ai~~~---~~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~~-g~lP 364 (431)
T PRK15076 291 EREELANAERIEIKRSR--EYASTIIEAIETG---EPSVIYGNVRNNGLIDNLPQGCCVEVPCLVDRNGIQPTKV-GDLP 364 (431)
T ss_pred HHHHhhCCCccccccch--HHHHHHHHHHhcC---CceEEEEECCCCCcCCCCCCCCEEEEeEEEcCCcceeeec-CCCC
Confidence 10 11111100 2244 4789999999985 6677777777654 26889999999999999999755 5899
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023853 250 EYERAGLEKAKKELAGSIQK 269 (276)
Q Consensus 250 ~~E~~~l~~sa~~i~~~~~~ 269 (276)
+..++++..-...-+-.++.
T Consensus 365 ~~~~~l~~~~~~~e~l~veA 384 (431)
T PRK15076 365 PQLAALNRTNINVQELTVEA 384 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99888876655443333333
No 40
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=99.91 E-value=7.2e-25 Score=178.53 Aligned_cols=100 Identities=38% Similarity=0.544 Sum_probs=90.9
Q ss_pred cccccccCCcccccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 023853 5 LAQNKFDVDSRAVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 84 (276)
Q Consensus 5 ~~~~~~d~~~~~~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~ 84 (276)
.+|+++|++.+..+.+..+.+..++++|||+||+|+|.|++||++|.+++..|+++++++++.+++++|+++++++|||+
T Consensus 42 ~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPv 121 (141)
T PF00056_consen 42 EALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPV 121 (141)
T ss_dssp HHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSH
T ss_pred eehhhhhhhhhcccccccccccccccccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcH
Confidence 47899999988866555544444589999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHcCCCCCCCEEE
Q 023853 85 NSTVPIAAEVFKKVGTYDPKRLLG 108 (276)
Q Consensus 85 d~~~~v~t~~~~~~~~~~~~rviG 108 (276)
| ++||++++.+|||++|+||
T Consensus 122 d----~~t~~~~~~s~~~~~kviG 141 (141)
T PF00056_consen 122 D----VMTYVAQKYSGFPPNKVIG 141 (141)
T ss_dssp H----HHHHHHHHHHTSSGGGEEE
T ss_pred H----HHHHHHHHhhCcCcccCcC
Confidence 9 9999999999999999998
No 41
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=99.90 E-value=2.7e-22 Score=190.51 Aligned_cols=237 Identities=20% Similarity=0.249 Sum_probs=164.8
Q ss_pred ceecCCCHHhhcCCCcEEEEcCCC------------CCCCCC--------CHHHHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 023853 19 GFLGQQQLEDALTGMDIVIIPAGV------------PRKPGM--------TRDDLFNINAGIVKTLCEGIAKCCPKAIVN 78 (276)
Q Consensus 19 ~i~~~~d~~~al~daDiVii~ag~------------~~k~g~--------~r~~~~~~N~~i~~~i~~~i~~~~p~~~vi 78 (276)
+|+.|+|+++|++|||+||++... |.|.|. -......||+++++++++.|+++||+||+|
T Consensus 61 ~v~~Ttdr~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~li 140 (437)
T cd05298 61 KFVYTTDPEEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWIL 140 (437)
T ss_pred EEEEECCHHHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEE
Confidence 599999999999999999996432 334442 246678899999999999999999999999
Q ss_pred EecCCCCCcHHHHHHHHHHcCCCCCCCEEEEeechHHHHHHHHHHHhCCCCCCceeeEEe-ecC----------CCeeee
Q 023853 79 LISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-GHA----------GVTILP 147 (276)
Q Consensus 79 vvtNP~d~~~~v~t~~~~~~~~~~~~rviG~t~lds~R~~~~la~~l~v~~~~v~~~ViG-~hg----------g~~~vp 147 (276)
++|||+| ++|+++++. +|+.||||+|.-.. -++..+|+.||+++++++..+.| ||. |.+.+|
T Consensus 141 n~tNP~~----~vt~~~~~~--~~~~kviGlC~~~~-~~~~~la~~lg~~~~~v~~~~~GlNH~~w~~~~~~~~G~D~~p 213 (437)
T cd05298 141 NYSNPAA----IVAEALRRL--FPNARILNICDMPI-AIMDSMAAILGLDRKDLEPDYFGLNHFGWFTKIYDKQGEDLLP 213 (437)
T ss_pred EecCcHH----HHHHHHHHH--CCCCCEEEECCcHH-HHHHHHHHHhCCCHHHceEEEEeecchhhhhheEECCCCchHH
Confidence 9999999 999999887 78899999997644 57888999999999999999999 775 223333
Q ss_pred ccc----C----------C-----------------------CCCC----CC-Chh--------------HHHHHHHHH-
Q 023853 148 LLS----Q----------V-----------------------KPSC----SL-TPT--------------EIDYLTDRI- 170 (276)
Q Consensus 148 ~~s----~----------~-----------------------~~~~----~~-~~~--------------~~~~i~~~v- 170 (276)
..- . . .+.. ++ .++ .+++..++.
T Consensus 214 ~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~y~~yy~~~~~~~~~~~~~~~~~~e~~~~~~~~l~ 293 (437)
T cd05298 214 KLREHVKENGYLPPDSDEEHRDPSWNDTFANAKDMMADFPDYLPNTYLQYYLYPDYMVEHSNPNYTRANEVMDGREKRVF 293 (437)
T ss_pred HHHHHHhccCCCcccccccccccCchHHHHHHhhHHHhCCCcCCCchhhHhCChHHHHHHhccccccHHHHHHHHHHHHH
Confidence 211 0 0 0000 00 000 011111111
Q ss_pred ---hcC-ccceeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEeeee-cCCC---CCccEEEEeEEEcCCceEEE
Q 023853 171 ---QNG-GTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYV-ASTV---TELPFFASKVRLGRAGIEEI 242 (276)
Q Consensus 171 ---~~~-~~~ii~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s~~-~~~y---~~~~~~s~Pv~ig~~Gv~~i 242 (276)
++. ..+..+..+- .+..| |.++++++++|+++ ++.++++++. +|.| ++|+++++||+||++|+.++
T Consensus 294 ~~~~~~~~~~~~~~~~~-~~~~y--a~~a~~ii~aI~~d---~~~~~~vnv~n~G~i~nL~~d~~vevP~~v~~~Gi~pi 367 (437)
T cd05298 294 EECRKIIETGTAEGSTF-HVDVH--GEYIVDLAASIAYN---TKERFLVIVENNGAIPNLPDDAMVEVPAYIGSNGPEPL 367 (437)
T ss_pred HHHhhhhhcCChhhhhh-hccch--HHHHHHHHHHHHcC---CCeEEEEEeecCCccCCCCCCcEEEEEEEEeCCCceec
Confidence 100 0000000000 01124 56999999999985 7889999865 5566 47899999999999999997
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 023853 243 YSLGPLNEYERAGLEKAKKELAGSIQK 269 (276)
Q Consensus 243 ~~~~~L~~~E~~~l~~sa~~i~~~~~~ 269 (276)
.- ++|++...++++.-...-+-.++.
T Consensus 368 ~v-g~lP~~~~~l~~~~~~~e~l~veA 393 (437)
T cd05298 368 VV-GKIPTFYKGLMEQQVAYEKLLVEA 393 (437)
T ss_pred cc-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 54 589999888776655444333433
No 42
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.88 E-value=4.4e-21 Score=182.32 Aligned_cols=235 Identities=19% Similarity=0.176 Sum_probs=167.5
Q ss_pred cceecCCCHHhhcCCCcEEEEcCCCCCCCCCCH----------------------HHHHHHHHHHHHHHHHHHHhhCCCc
Q 023853 18 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTR----------------------DDLFNINAGIVKTLCEGIAKCCPKA 75 (276)
Q Consensus 18 ~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r----------------------~~~~~~N~~i~~~i~~~i~~~~p~~ 75 (276)
..|..++|+++|++|||+||++.+....++.++ .....+|+++++++++.+++++|++
T Consensus 60 ~~I~~ttD~~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a 139 (423)
T cd05297 60 LKIEATTDRREALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDA 139 (423)
T ss_pred eEEEEeCCHHHHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCC
Confidence 468889999999999999999988765555555 6677899999999999999999999
Q ss_pred EEEEecCCCCCcHHHHHHHHHHcCCCCCCCEEEEeechHHHHHHHHHHHhCCCCCCceeeEEe-ecC---------CCee
Q 023853 76 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-GHA---------GVTI 145 (276)
Q Consensus 76 ~vivvtNP~d~~~~v~t~~~~~~~~~~~~rviG~t~lds~R~~~~la~~l~v~~~~v~~~ViG-~hg---------g~~~ 145 (276)
|++++|||+| ++|+++++.++ .|+||+|.- +.|+++.+|+.+|+++++|+++++| ||. |.+.
T Consensus 140 ~~i~~tNPv~----i~t~~~~k~~~---~rviG~c~~-~~~~~~~~a~~l~~~~~~v~~~~~GlNH~~w~~~~~~~G~d~ 211 (423)
T cd05297 140 WLLNYANPMA----ELTWALNRYTP---IKTVGLCHG-VQGTAEQLAKLLGEPPEEVDYQVAGINHMAWLLKFEYNGEDL 211 (423)
T ss_pred EEEEcCChHH----HHHHHHHHhCC---CCEEEECCc-HHHHHHHHHHHhCCCHHHeEEEEEeeccHhhhhhheECCcch
Confidence 9999999999 99999999876 799999755 7899999999999999999999999 886 3334
Q ss_pred eeccc-----------CCC-------------CC-------C---C--CChhHHHH------------------HHHHHh
Q 023853 146 LPLLS-----------QVK-------------PS-------C---S--LTPTEIDY------------------LTDRIQ 171 (276)
Q Consensus 146 vp~~s-----------~~~-------------~~-------~---~--~~~~~~~~------------------i~~~v~ 171 (276)
+|... ... +. . . ..++.... ......
T Consensus 212 ~p~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (423)
T cd05297 212 YPLLDEWIEEGSEEWDQLSPVRFDMYRRYGLFPTESSEHLSEYVPHYRKETKKIWYGEFNEDEYGGRDEEQGWEWYEERL 291 (423)
T ss_pred HHHHHHHHhccCccchhcccchHHHHHHcCCcccCcchhhhhhccccccchhhHHhhhhcccccchhHHHHHHHHHHhhh
Confidence 43211 111 00 0 0 00011000 111111
Q ss_pred cCccceeec--cCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEeeeecCCC----CCccEEEEeEEEcCCceEEEccC
Q 023853 172 NGGTEVVEA--KTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTV----TELPFFASKVRLGRAGIEEIYSL 245 (276)
Q Consensus 172 ~~~~~ii~~--k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s~~~~~y----~~~~~~s~Pv~ig~~Gv~~i~~~ 245 (276)
.... -+. ....+...++. .++++++||.++ ++.++.+++.+.+. |++.++.+||.++++|+.++--
T Consensus 292 ~~~~--~~~~~~~~~~~~~~~e--~a~~ii~ai~~~---~~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~p~~~- 363 (423)
T cd05297 292 KLIL--AEIDKEELDPVKRSGE--YASPIIEALVTG---KPRRINGNVPNNGLIPNLPDDVVVEVPALVDRNGIHPEKI- 363 (423)
T ss_pred hhcc--chhcchhccccccchH--HHHHHHHHHhcC---CceEEEEECCCCCCCCCCCCCcEEEEeeEEcCCCceeccc-
Confidence 1000 000 00011223444 688999999985 67778877776542 6789999999999999999754
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 023853 246 GPLNEYERAGLEKAKKELAGSIQ 268 (276)
Q Consensus 246 ~~L~~~E~~~l~~sa~~i~~~~~ 268 (276)
++|++...+++..-...-+-.++
T Consensus 364 g~lp~~~~~l~~~~~~~e~l~ve 386 (423)
T cd05297 364 GPLPPQLAALIRPRINVQELAVE 386 (423)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 58999888877665544433333
No 43
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=99.82 E-value=3.6e-19 Score=166.61 Aligned_cols=240 Identities=19% Similarity=0.212 Sum_probs=165.5
Q ss_pred cceecCCCHHhhcCCCcEEEEcCCC------------CCCCCC--------CHHHHHHHHHHHHHHHHHHHHhhCCCcEE
Q 023853 18 RGFLGQQQLEDALTGMDIVIIPAGV------------PRKPGM--------TRDDLFNINAGIVKTLCEGIAKCCPKAIV 77 (276)
Q Consensus 18 ~~i~~~~d~~~al~daDiVii~ag~------------~~k~g~--------~r~~~~~~N~~i~~~i~~~i~~~~p~~~v 77 (276)
-+|+.|+|+++||+|||+||.+... |.|.|- .......|++|++-++++.|+++||+||+
T Consensus 63 ~kv~~ttd~~eAl~gAdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~ 142 (442)
T COG1486 63 VKVEATTDRREALEGADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWM 142 (442)
T ss_pred eEEEEecCHHHHhcCCCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceE
Confidence 3499999999999999999996432 445542 24666789999999999999999999999
Q ss_pred EEecCCCCCcHHHHHHHHHHcCCCCCCCEEEEeechHHHHHHHHHHHhCCCC-CCceeeEEe-ecC---------CCeee
Q 023853 78 NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDP-REVDVPVVG-GHA---------GVTIL 146 (276)
Q Consensus 78 ivvtNP~d~~~~v~t~~~~~~~~~~~~rviG~t~lds~R~~~~la~~l~v~~-~~v~~~ViG-~hg---------g~~~v 146 (276)
+++|||+. ++|+++++.+ |.-|+||+|... .-....||+.|++++ ++++.-+.| ||. |.+..
T Consensus 143 lNytNP~~----~vTeAv~r~~--~~~K~VGlCh~~-~g~~~~lAe~L~~~~~~~l~~~~aGlNH~~w~~~~~~~G~d~~ 215 (442)
T COG1486 143 LNYTNPAA----IVTEAVRRLY--PKIKIVGLCHGP-IGIAMELAEVLGLEPREDLRYRVAGLNHMVWILRVRDDGEDLY 215 (442)
T ss_pred EeccChHH----HHHHHHHHhC--CCCcEEeeCCch-HHHHHHHHHHhCCCchhceeEEEeechhhhhhhHhhhcCccch
Confidence 99999999 9999999874 444999999763 366788999999975 999999999 886 22222
Q ss_pred ec-----------------------ccCCC--------CCC-----C-----------------CChhHHHHHHHHHhcC
Q 023853 147 PL-----------------------LSQVK--------PSC-----S-----------------LTPTEIDYLTDRIQNG 173 (276)
Q Consensus 147 p~-----------------------~s~~~--------~~~-----~-----------------~~~~~~~~i~~~v~~~ 173 (276)
|. |.... +.. . ...+++.+-..+....
T Consensus 216 p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ra~ev~~re~~~~~~ 295 (442)
T COG1486 216 PELLEALEEGGSPSEPENKNIQSPVWIDMFLKYGYPVLPSSYHRYYYYPYDMKEKKPDEIEKFGTRANEVMKREKELFEL 295 (442)
T ss_pred HHHHHHHhccccCCccccccccCcchHHHHHHhCcCcccCcchhhheehHhhhhccchhhhhcCCCHHHHHHHHHHHHHH
Confidence 21 11000 000 0 1111111111110000
Q ss_pred ccc-eeecc----CCCCch--hHHHHHHHHHHHHHHHhccCCCCCeeEeeeecCC----CCCccEEEEeEEEcCCceEEE
Q 023853 174 GTE-VVEAK----TGAGSA--TLSMAYAAAKFADACLRGLRGDAGVIECAYVAST----VTELPFFASKVRLGRAGIEEI 242 (276)
Q Consensus 174 ~~~-ii~~k----~gkg~~--~~s~A~a~~~li~ai~~~~~~~~~~~~~s~~~~~----y~~~~~~s~Pv~ig~~Gv~~i 242 (276)
-.. .+..+ .-++.+ .++. .++.++.||++| ++.++.+++.+.+ .|+|.++.+||+++++|+.++
T Consensus 296 ~~~~~~~~~p~~~~~~~~~~~~~~e--~a~~ii~Ai~~~---~~~~~~vNv~N~G~I~nlp~D~vVEvpc~Vd~~Gi~P~ 370 (442)
T COG1486 296 YKKPELKEKPEELEKRIGAGKYSSE--YASNIINAIENN---KPSRIYVNVRNNGAITNLPDDAVVEVPCLVDRNGIHPL 370 (442)
T ss_pred HhhhhhhcCchhhhhcCCcccccHH--HHHHHHHHHhcC---CceEEEEEcCCCccccCCCCCeEEEeeEEecCCCCccc
Confidence 000 00000 011222 4545 888999999996 7778888776544 378999999999999999997
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 023853 243 YSLGPLNEYERAGLEKAKKELAGSIQKG 270 (276)
Q Consensus 243 ~~~~~L~~~E~~~l~~sa~~i~~~~~~~ 270 (276)
... +|++.-.+.++.....-+-.++.+
T Consensus 371 ~~g-~lP~~~~~l~~~~i~~e~l~veA~ 397 (442)
T COG1486 371 AVG-DLPEFVKGLMHTNINVEELTVEAA 397 (442)
T ss_pred ccC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 665 999999998887766555444443
No 44
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=99.51 E-value=9.3e-14 Score=117.26 Aligned_cols=106 Identities=21% Similarity=0.270 Sum_probs=84.3
Q ss_pred CcccccceecCCCHHhhcCCCcEEEEcCCC------------CCCCCCC----------HHHHHHHHHHHHHHHHHHHHh
Q 023853 13 DSRAVRGFLGQQQLEDALTGMDIVIIPAGV------------PRKPGMT----------RDDLFNINAGIVKTLCEGIAK 70 (276)
Q Consensus 13 ~~~~~~~i~~~~d~~~al~daDiVii~ag~------------~~k~g~~----------r~~~~~~N~~i~~~i~~~i~~ 70 (276)
..+.+ +|+.|+|+++|++|||+||++... |.|.|.. ......|++|.+.++++.|++
T Consensus 55 ~~~~~-~v~~ttd~~eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~ 133 (183)
T PF02056_consen 55 AGADL-KVEATTDRREALEGADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEE 133 (183)
T ss_dssp CTTSS-EEEEESSHHHHHTTESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCe-EEEEeCCHHHHhCCCCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHH
Confidence 44445 489999999999999999997653 5565532 477788999999999999999
Q ss_pred hCCCcEEEEecCCCCCcHHHHHHHHHHcCCCCCCCEEEEeechHHHHHHHHHHHhC
Q 023853 71 CCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLG 126 (276)
Q Consensus 71 ~~p~~~vivvtNP~d~~~~v~t~~~~~~~~~~~~rviG~t~lds~R~~~~la~~l~ 126 (276)
+||+||++++|||+. ++|+++.+.+ |..|++|+|.-.. -+...+|+.||
T Consensus 134 ~~PdAw~iNytNP~~----~vt~a~~r~~--~~~k~vGlCh~~~-~~~~~la~~L~ 182 (183)
T PF02056_consen 134 LCPDAWLINYTNPMG----IVTEALSRYT--PKIKVVGLCHGPQ-GTRRQLAKLLG 182 (183)
T ss_dssp HTTTSEEEE-SSSHH----HHHHHHHHHS--TTSEEEEE-SHHH-HHHHHHHHHHT
T ss_pred hCCCcEEEeccChHH----HHHHHHHHhC--CCCCEEEECCCHH-HHHHHHHHHhC
Confidence 999999999999999 9999988874 4578999997644 66778899887
No 45
>PF11975 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-terminal domain; InterPro: IPR022616 This domain is found primarily in bacterial family 4 glycosyl hydrolases. It is found in the C terminus. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1UP4_A 1UP6_C 1UP7_E 1VJT_A 1U8X_X 1S6Y_A 3FEF_D 1OBB_A.
Probab=96.53 E-value=0.026 Score=49.50 Aligned_cols=77 Identities=14% Similarity=0.128 Sum_probs=49.5
Q ss_pred CchhHHHHHHHHHHHHHHHhccCCCCCeeEeeeecCCC----CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHH
Q 023853 185 GSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTV----TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAK 260 (276)
Q Consensus 185 g~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s~~~~~y----~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa 260 (276)
++..|+. .++ .+|.++ ++.++.+++.+.+. |.|.++.+||+|+++|+.++.. ++|++...+++....
T Consensus 134 ~~~~~a~--~~i---~~i~~~---~~~~~~vNv~N~G~I~nLp~davVEvp~~v~~~Gi~P~~~-g~lP~~~~~li~~~~ 204 (232)
T PF11975_consen 134 GSGEYAE--AAI---EAIYND---KPKRFVVNVPNNGAIPNLPDDAVVEVPCYVDGDGIHPVAV-GPLPPAIAGLIQQVK 204 (232)
T ss_dssp TTSCHHH--HHH---HHHHHS---SEEEEEEEEE-TTSSTTS-TTSEEEEEEEEETTEEEEB-S-B---HHHHHHHHHHH
T ss_pred cccchHH--HHH---HHHhcC---CCeEEEEECCCCCccCCCCCCcEEEEEEEEcCCeeEeccC-CCCCHHHHHHHHHHH
Confidence 4556655 444 444664 56677777776542 6789999999999999999655 599999999777666
Q ss_pred HHHHHHHHHH
Q 023853 261 KELAGSIQKG 270 (276)
Q Consensus 261 ~~i~~~~~~~ 270 (276)
..-+-.++.+
T Consensus 205 ~~e~L~veAa 214 (232)
T PF11975_consen 205 AYERLTVEAA 214 (232)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5554444443
No 46
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.01 E-value=0.36 Score=45.61 Aligned_cols=66 Identities=21% Similarity=0.325 Sum_probs=48.2
Q ss_pred eecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEe--cCCCCCcHHHH
Q 023853 20 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI--SNPVNSTVPIA 91 (276)
Q Consensus 20 i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivv--tNP~d~~~~v~ 91 (276)
+..|+|+++|+++||+++|+.|.|.++.-+ .+...+...++.|.++.+...+||+ |=|+.+.-.+-
T Consensus 64 l~fTtd~~~a~~~adv~fIavgTP~~~dg~------aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~ 131 (414)
T COG1004 64 LRFTTDYEEAVKDADVVFIAVGTPPDEDGS------ADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVR 131 (414)
T ss_pred EEEEcCHHHHHhcCCEEEEEcCCCCCCCCC------ccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHH
Confidence 889999999999999999999988766322 2356677777888777766445555 56777544333
No 47
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=89.89 E-value=0.82 Score=44.52 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=45.0
Q ss_pred ceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEe--cCCCCCcH
Q 023853 19 GFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI--SNPVNSTV 88 (276)
Q Consensus 19 ~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivv--tNP~d~~~ 88 (276)
.+..|+|+++++++||++||+.+.|..++-...+ -.-+...+++.++.|.++-+++.+|++ |-|..++-
T Consensus 65 ~l~~t~~~~~~i~~advi~I~V~TP~~~~g~~~~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~ 135 (473)
T PLN02353 65 NLFFSTDVEKHVAEADIVFVSVNTPTKTRGLGAG-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAE 135 (473)
T ss_pred CEEEEcCHHHHHhcCCEEEEEeCCCCCCCCCcCC-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHH
Confidence 4778999988999999999999888643210000 012344466677777777666655454 67877543
No 48
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.78 E-value=1.1 Score=40.42 Aligned_cols=72 Identities=18% Similarity=0.313 Sum_probs=42.0
Q ss_pred cceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHH
Q 023853 18 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKK 97 (276)
Q Consensus 18 ~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d~~~~v~t~~~~~ 97 (276)
..++.++|+++++++||+||.+.- .+....+++...+.++.+...+ +++|.... .+++....
T Consensus 70 ~~i~~~~d~~~a~~~aDlVieavp--------------e~~~~k~~~~~~l~~~~~~~~i-i~sntSt~---~~~~~~~~ 131 (287)
T PRK08293 70 NRITLTTDLAEAVKDADLVIEAVP--------------EDPEIKGDFYEELAKVAPEKTI-FATNSSTL---LPSQFAEA 131 (287)
T ss_pred cCeEEeCCHHHHhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCCE-EEECcccC---CHHHHHhh
Confidence 456788999989999999999753 1244455555667677654432 34444432 12233222
Q ss_pred cCCCCCCCEEEE
Q 023853 98 VGTYDPKRLLGV 109 (276)
Q Consensus 98 ~~~~~~~rviG~ 109 (276)
.. .+.|++|+
T Consensus 132 -~~-~~~r~vg~ 141 (287)
T PRK08293 132 -TG-RPEKFLAL 141 (287)
T ss_pred -cC-CcccEEEE
Confidence 22 24567775
No 49
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=87.63 E-value=0.29 Score=41.44 Aligned_cols=78 Identities=18% Similarity=0.230 Sum_probs=44.2
Q ss_pred cceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEe--cCCCCCcHHHHHHHH
Q 023853 18 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI--SNPVNSTVPIAAEVF 95 (276)
Q Consensus 18 ~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivv--tNP~d~~~~v~t~~~ 95 (276)
..+..++|+++++++||+++|+.+.|..++.+ -+...+.+.++.|.++..++-++++ |=|..++--++..++
T Consensus 62 ~~l~~t~~~~~ai~~adv~~I~VpTP~~~~~~------~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~il 135 (185)
T PF03721_consen 62 GRLRATTDIEEAIKDADVVFICVPTPSDEDGS------PDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPIL 135 (185)
T ss_dssp TSEEEESEHHHHHHH-SEEEE----EBETTTS------BETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHH
T ss_pred ccchhhhhhhhhhhccceEEEecCCCccccCC------ccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhh
Confidence 45678999999999999999999887655322 1223344445555555434544444 567774443555666
Q ss_pred HHcCCC
Q 023853 96 KKVGTY 101 (276)
Q Consensus 96 ~~~~~~ 101 (276)
.+.++.
T Consensus 136 e~~~~~ 141 (185)
T PF03721_consen 136 EKRSGK 141 (185)
T ss_dssp HHHCCT
T ss_pred hhhccc
Confidence 666653
No 50
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.22 E-value=1.9 Score=38.67 Aligned_cols=70 Identities=21% Similarity=0.366 Sum_probs=40.4
Q ss_pred cceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CcEEEEecCCCCCcHHHHHHHHH
Q 023853 18 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFK 96 (276)
Q Consensus 18 ~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~~~vivvtNP~d~~~~v~t~~~~ 96 (276)
..++.++|++ ++++||+||++.- .+..+-.++...+.++.+ ++++ +||-.... ++. +.
T Consensus 69 ~~l~~~~~~~-~~~~aDlVi~av~--------------e~~~~k~~~~~~l~~~~~~~~il--~s~ts~~~---~~~-la 127 (282)
T PRK05808 69 ARITGTTDLD-DLKDADLVIEAAT--------------ENMDLKKKIFAQLDEIAKPEAIL--ATNTSSLS---ITE-LA 127 (282)
T ss_pred hCeEEeCCHH-HhccCCeeeeccc--------------ccHHHHHHHHHHHHhhCCCCcEE--EECCCCCC---HHH-HH
Confidence 3567788986 6999999999852 123333455556767764 5544 55544422 222 22
Q ss_pred HcCCCCCCCEEEE
Q 023853 97 KVGTYDPKRLLGV 109 (276)
Q Consensus 97 ~~~~~~~~rviG~ 109 (276)
...+. +.|++|+
T Consensus 128 ~~~~~-~~r~ig~ 139 (282)
T PRK05808 128 AATKR-PDKVIGM 139 (282)
T ss_pred HhhCC-CcceEEe
Confidence 33332 3577776
No 51
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=86.21 E-value=2.6 Score=38.73 Aligned_cols=73 Identities=25% Similarity=0.341 Sum_probs=50.6
Q ss_pred ccccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCcEEEEecCCCCCcHHHHHH
Q 023853 15 RAVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAE 93 (276)
Q Consensus 15 ~~~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~~~vivvtNP~d~~~~v~t~ 93 (276)
..+..++.++|+. +++|||+||=+. ..|..+=+++-..+.+++ |+++ +.||-... .++.
T Consensus 66 ~~l~~i~~~~~~~-~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~aI--lASNTSsl---~it~ 125 (307)
T COG1250 66 AALARITPTTDLA-ALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDAI--LASNTSSL---SITE 125 (307)
T ss_pred HHHhhccccCchh-HhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCcE--EeeccCCC---CHHH
Confidence 4566788899997 899999988754 345666677777888887 6774 67777664 3344
Q ss_pred HHHHcCCCCCCCEEEE
Q 023853 94 VFKKVGTYDPKRLLGV 109 (276)
Q Consensus 94 ~~~~~~~~~~~rviG~ 109 (276)
..... -.|+|++|+
T Consensus 126 ia~~~--~rper~iG~ 139 (307)
T COG1250 126 LAEAL--KRPERFIGL 139 (307)
T ss_pred HHHHh--CCchhEEEE
Confidence 33333 346789887
No 52
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.03 E-value=3.2 Score=38.33 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=43.2
Q ss_pred cceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHH
Q 023853 18 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKK 97 (276)
Q Consensus 18 ~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d~~~~v~t~~~~~ 97 (276)
..++.++++++++++||+|+-+.- .|.++=+++-..+.+++|... |+.||-... ..+.+...
T Consensus 69 ~~i~~~~~l~~av~~aDlViEavp--------------E~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l---~~s~la~~ 130 (321)
T PRK07066 69 ARLRFVATIEACVADADFIQESAP--------------EREALKLELHERISRAAKPDA-IIASSTSGL---LPTDFYAR 130 (321)
T ss_pred hhceecCCHHHHhcCCCEEEECCc--------------CCHHHHHHHHHHHHHhCCCCe-EEEECCCcc---CHHHHHHh
Confidence 356778899989999999888642 123333444467777775543 667776652 23333322
Q ss_pred cCCCCCCCEEEE
Q 023853 98 VGTYDPKRLLGV 109 (276)
Q Consensus 98 ~~~~~~~rviG~ 109 (276)
.. .|+|++|+
T Consensus 131 -~~-~p~R~~g~ 140 (321)
T PRK07066 131 -AT-HPERCVVG 140 (321)
T ss_pred -cC-CcccEEEE
Confidence 22 24667775
No 53
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.19 E-value=4 Score=36.80 Aligned_cols=70 Identities=14% Similarity=0.287 Sum_probs=39.7
Q ss_pred ceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CcEEEEecCCCCCcHHHHHHHHHH
Q 023853 19 GFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKK 97 (276)
Q Consensus 19 ~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~~~vivvtNP~d~~~~v~t~~~~~ 97 (276)
.+..++|++ ++++||+||.+... +..+.+++...+.++.+ +++++ ||-... .++++...
T Consensus 73 ~i~~~~~~~-~~~~aDlVieav~e--------------~~~~k~~~~~~l~~~~~~~~il~--S~tsg~---~~~~la~~ 132 (291)
T PRK06035 73 RIRTSTSYE-SLSDADFIVEAVPE--------------KLDLKRKVFAELERNVSPETIIA--SNTSGI---MIAEIATA 132 (291)
T ss_pred CcEeeCCHH-HhCCCCEEEEcCcC--------------cHHHHHHHHHHHHhhCCCCeEEE--EcCCCC---CHHHHHhh
Confidence 456778884 89999999997631 22333445555667664 55544 444432 23333332
Q ss_pred cCCCCCCCEEEEe
Q 023853 98 VGTYDPKRLLGVT 110 (276)
Q Consensus 98 ~~~~~~~rviG~t 110 (276)
+ . .+.|++|+-
T Consensus 133 ~-~-~~~r~ig~h 143 (291)
T PRK06035 133 L-E-RKDRFIGMH 143 (291)
T ss_pred c-C-CcccEEEEe
Confidence 2 1 256788873
No 54
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=84.27 E-value=8.6 Score=33.09 Aligned_cols=45 Identities=18% Similarity=0.119 Sum_probs=27.9
Q ss_pred CHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 023853 25 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 85 (276)
Q Consensus 25 d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d 85 (276)
+..++++++|+||++.-.. .+.++.+.+...-.+.++|-++||.+
T Consensus 61 ~~~ea~~~aDvVilavp~~----------------~~~~~l~~l~~~l~~~vvI~~~ngi~ 105 (219)
T TIGR01915 61 DNAEAAKRADVVILAVPWD----------------HVLKTLESLRDELSGKLVISPVVPLA 105 (219)
T ss_pred ChHHHHhcCCEEEEECCHH----------------HHHHHHHHHHHhccCCEEEEeccCce
Confidence 4456899999999986311 12223333333323457888899987
No 55
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=83.08 E-value=1.2 Score=36.36 Aligned_cols=48 Identities=25% Similarity=0.328 Sum_probs=33.3
Q ss_pred cceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCc-EEEEec
Q 023853 18 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA-IVNLIS 81 (276)
Q Consensus 18 ~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~-~vivvt 81 (276)
..+..++|+++++++||+||++.- ....+++.+++..+-+++ .+++++
T Consensus 55 ~~i~~t~dl~~a~~~ad~IiiavP----------------s~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 55 ENIKATTDLEEALEDADIIIIAVP----------------SQAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp TTEEEESSHHHHHTT-SEEEE-S-----------------GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred cccccccCHHHHhCcccEEEeccc----------------HHHHHHHHHHHhhccCCCCEEEEec
Confidence 367789999999999999999642 344577888888887555 444443
No 56
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=81.68 E-value=8.7 Score=35.59 Aligned_cols=65 Identities=17% Similarity=0.276 Sum_probs=44.9
Q ss_pred ceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCcEEEEecCCCCC-cHHHHHHHHH
Q 023853 19 GFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS-TVPIAAEVFK 96 (276)
Q Consensus 19 ~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~~~vivvtNP~d~-~~~v~t~~~~ 96 (276)
.+..+.|+++++++||+|++.-- ...+++++++++.+- ++.+++.+|.=.+. +...++++++
T Consensus 58 ~l~at~Dl~~a~~~ad~iv~avP----------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~ 121 (329)
T COG0240 58 NLKATTDLAEALDGADIIVIAVP----------------SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIE 121 (329)
T ss_pred ccccccCHHHHHhcCCEEEEECC----------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHH
Confidence 46689999999999999999642 355667777776454 66777777632221 3337788877
Q ss_pred HcC
Q 023853 97 KVG 99 (276)
Q Consensus 97 ~~~ 99 (276)
+..
T Consensus 122 e~l 124 (329)
T COG0240 122 EEL 124 (329)
T ss_pred HHc
Confidence 763
No 57
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=80.55 E-value=3.9 Score=34.31 Aligned_cols=73 Identities=23% Similarity=0.378 Sum_probs=43.4
Q ss_pred ccccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCcEEEEecCCCCCcHHHHHH
Q 023853 15 RAVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAE 93 (276)
Q Consensus 15 ~~~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~~~vivvtNP~d~~~~v~t~ 93 (276)
..+..++.++|+++ +.|||+||=+. ..+.++=+++-..+.+.+ |+++ +.||-... -+++
T Consensus 62 ~~~~~i~~~~dl~~-~~~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~i--lasnTSsl---~i~~ 121 (180)
T PF02737_consen 62 AALARISFTTDLEE-AVDADLVIEAI--------------PEDLELKQELFAELDEICPPDTI--LASNTSSL---SISE 121 (180)
T ss_dssp HHHHTEEEESSGGG-GCTESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTSE--EEE--SSS----HHH
T ss_pred hhhhhcccccCHHH-Hhhhheehhhc--------------cccHHHHHHHHHHHHHHhCCCce--EEecCCCC---CHHH
Confidence 34667889999986 55999988754 124555567777888887 5665 45554442 3444
Q ss_pred HHHHcCCCCCCCEEEE
Q 023853 94 VFKKVGTYDPKRLLGV 109 (276)
Q Consensus 94 ~~~~~~~~~~~rviG~ 109 (276)
..... . .|+|++|+
T Consensus 122 la~~~-~-~p~R~ig~ 135 (180)
T PF02737_consen 122 LAAAL-S-RPERFIGM 135 (180)
T ss_dssp HHTTS-S-TGGGEEEE
T ss_pred HHhcc-C-cCceEEEE
Confidence 33332 2 35567776
No 58
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.05 E-value=6.1 Score=36.28 Aligned_cols=72 Identities=15% Similarity=0.177 Sum_probs=40.3
Q ss_pred cceecCC--CHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCcEEEEecCCCCCcHHHHHHH
Q 023853 18 RGFLGQQ--QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEV 94 (276)
Q Consensus 18 ~~i~~~~--d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~~~vivvtNP~d~~~~v~t~~ 94 (276)
..++.++ |+.+++++||+||-+.- .+..+=+++-..+.+.+ |++++ .||-... .++++
T Consensus 63 ~~i~~~~~~~~~~a~~~aD~ViEav~--------------E~~~~K~~~f~~l~~~~~~~~il--aSntS~~---~~~~l 123 (314)
T PRK08269 63 ARIAVVARDGAADALADADLVFEAVP--------------EVLDAKREALRWLGRHVDADAII--ASTTSTF---LVTDL 123 (314)
T ss_pred hCeEeecCcchHHHhccCCEEEECCc--------------CCHHHHHHHHHHHHhhCCCCcEE--EEccccC---CHHHH
Confidence 3455554 36678999999998752 12233333444466776 55555 6665542 23333
Q ss_pred HHHcCCCCCCCEEEEe
Q 023853 95 FKKVGTYDPKRLLGVT 110 (276)
Q Consensus 95 ~~~~~~~~~~rviG~t 110 (276)
... .. .|.|++|+-
T Consensus 124 a~~-~~-~p~r~~g~H 137 (314)
T PRK08269 124 QRH-VA-HPERFLNAH 137 (314)
T ss_pred Hhh-cC-CcccEEEEe
Confidence 333 22 356788873
No 59
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.64 E-value=8.7 Score=34.80 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=18.3
Q ss_pred ceecCCCHHhhcCCCcEEEEcC
Q 023853 19 GFLGQQQLEDALTGMDIVIIPA 40 (276)
Q Consensus 19 ~i~~~~d~~~al~daDiVii~a 40 (276)
.++.+.|+++++++||+||++.
T Consensus 66 ~i~~~~~~~~~~~~aDlVi~av 87 (311)
T PRK06130 66 RIRMEAGLAAAVSGADLVIEAV 87 (311)
T ss_pred ceEEeCCHHHHhccCCEEEEec
Confidence 3567788988899999999975
No 60
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=75.39 E-value=11 Score=33.41 Aligned_cols=110 Identities=14% Similarity=0.010 Sum_probs=61.9
Q ss_pred CHHhhcCC--CcEEEEcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCC------CCcHHHHHHH
Q 023853 25 QLEDALTG--MDIVIIPAGVPR--KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV------NSTVPIAAEV 94 (276)
Q Consensus 25 d~~~al~d--aDiVii~ag~~~--k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~------d~~~~v~t~~ 94 (276)
++++++++ +|+||..++... .........+..|..-...+++.+.+...+..++.+|... +. . ..+
T Consensus 64 ~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~-~-~~~-- 139 (317)
T TIGR01181 64 LVSRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKG-D-AFT-- 139 (317)
T ss_pred HHHHHHhhcCCCEEEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCC-C-CcC--
Confidence 45666776 899999887532 1223445677889999999999998876555566554211 00 0 000
Q ss_pred HHHcCCCCCCCEEEEeechHHHHHHHHHHHhCCCCCCce-eeEEeec
Q 023853 95 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH 140 (276)
Q Consensus 95 ~~~~~~~~~~rviG~t~lds~R~~~~la~~l~v~~~~v~-~~ViG~h 140 (276)
......+....|.+.....++-..+++..+++..-++ ..++|..
T Consensus 140 --e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~ 184 (317)
T TIGR01181 140 --ETTPLAPSSPYSASKAASDHLVRAYHRTYGLPALITRCSNNYGPY 184 (317)
T ss_pred --CCCCCCCCCchHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCC
Confidence 1112223333344333333444445666777766666 5566743
No 61
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=75.20 E-value=2.9 Score=34.40 Aligned_cols=63 Identities=19% Similarity=0.177 Sum_probs=34.2
Q ss_pred cceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCcEEEEecCCC
Q 023853 18 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPV 84 (276)
Q Consensus 18 ~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~~~vivvtNP~ 84 (276)
.+|+.++|+++++++||+|..+.=.+... .+|.+.+..-.+ ..+-..+.+.+ +++++ .-.=|+
T Consensus 59 ~~i~~~~~~~e~l~~aDvvy~~~~~s~~~-~e~~~~~~~~~~--y~v~~~~m~~a~~~~i~-mH~LP~ 122 (158)
T PF00185_consen 59 GKITITDDIEEALKGADVVYTDRWQSMGD-KERFKRLEKFKP--YQVTEELMERAKPDAIF-MHPLPA 122 (158)
T ss_dssp TEEEEESSHHHHHTT-SEEEEESSSCTTS-GGHHHHHHHHGG--GSBSHHHHHTSSTT-EE-EESSS-
T ss_pred CCeEEEeCHHHhcCCCCEEEEcCcccccc-hHHHHHHHHhcC--CccCHHHHHhcCCCcEE-EeCCCC
Confidence 45778899999999999988864322211 345544443333 23444444444 56654 444463
No 62
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=74.95 E-value=12 Score=34.00 Aligned_cols=23 Identities=26% Similarity=0.198 Sum_probs=19.0
Q ss_pred cceecCCCHHhhcCCCcEEEEcC
Q 023853 18 RGFLGQQQLEDALTGMDIVIIPA 40 (276)
Q Consensus 18 ~~i~~~~d~~~al~daDiVii~a 40 (276)
..+..+.|+++++++||+|+...
T Consensus 68 ~~i~~~~~~~~a~~~ad~Vi~av 90 (308)
T PRK06129 68 ARIRVTDSLADAVADADYVQESA 90 (308)
T ss_pred cCeEEECcHHHhhCCCCEEEECC
Confidence 34677889998999999999865
No 63
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=74.69 E-value=9.8 Score=34.18 Aligned_cols=57 Identities=23% Similarity=0.335 Sum_probs=44.8
Q ss_pred cceecCCCHHhhcCCCcEEEEcCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHhhCCC
Q 023853 18 RGFLGQQQLEDALTGMDIVIIPAGVPRKPG-MTRDDLFNINAGIVKTLCEGIAKCCPK 74 (276)
Q Consensus 18 ~~i~~~~d~~~al~daDiVii~ag~~~k~g-~~r~~~~~~N~~i~~~i~~~i~~~~p~ 74 (276)
-+++-..+++++++++|+|+-+|+...-.+ ..+..+..-|+.-.+.+.+.+.+.+-+
T Consensus 52 ~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~Vk 109 (280)
T PF01073_consen 52 GDITDPESLEEALEGVDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVK 109 (280)
T ss_pred eccccHHHHHHHhcCCceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 345556688899999999999987543334 567888999999999999999987533
No 64
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=73.49 E-value=3.8 Score=33.34 Aligned_cols=90 Identities=21% Similarity=0.249 Sum_probs=48.0
Q ss_pred cccCCccccccee---cCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCc-EEEEecCCC
Q 023853 9 KFDVDSRAVRGFL---GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA-IVNLISNPV 84 (276)
Q Consensus 9 ~~d~~~~~~~~i~---~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~-~vivvtNP~ 84 (276)
+.|+......+.. ...+.++.+.+||+|++|+..- +..-.+.+-++++++ .+++++ |.
T Consensus 36 v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGsTl-----------------vN~Ti~~iL~~~~~~~~vil~G-pS 97 (147)
T PF04016_consen 36 VFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGSTL-----------------VNGTIDDILELARNAREVILYG-PS 97 (147)
T ss_dssp EEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECHHC-----------------CTTTHHHHHHHTTTSSEEEEES-CC
T ss_pred EEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEeeee-----------------ecCCHHHHHHhCccCCeEEEEe-cC
Confidence 3455554443332 4567778999999999998522 222333444556544 555554 65
Q ss_pred CCcHHHHHHHHHHcCCCCCCCEEEEeechHHHHHHHHH
Q 023853 85 NSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVA 122 (276)
Q Consensus 85 d~~~~v~t~~~~~~~~~~~~rviG~t~lds~R~~~~la 122 (276)
-.++| + -+.++.-..+-|+-..|..++.+.++
T Consensus 98 ~~~~P---~---~l~~~Gv~~v~g~~v~d~~~~~~~i~ 129 (147)
T PF04016_consen 98 APLHP---E---ALFDYGVTYVGGSRVVDPEKVLRAIS 129 (147)
T ss_dssp GGS-G---G---GGCCTT-SEEEEEEES-HHHHHHHHC
T ss_pred chhhH---H---HHHhCCCCEEEEEEEeCHHHHHHHHH
Confidence 54332 2 22334445566666777777777664
No 65
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=71.83 E-value=56 Score=29.45 Aligned_cols=164 Identities=12% Similarity=0.177 Sum_probs=90.4
Q ss_pred ceecCCCHHhhcCCCcEEEEcCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHH
Q 023853 19 GFLGQQQLEDALTGMDIVIIPAGVPRKPGM-TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKK 97 (276)
Q Consensus 19 ~i~~~~d~~~al~daDiVii~ag~~~k~g~-~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d~~~~v~t~~~~~ 97 (276)
+.+.-..+.+.+=+.|+|-+.+...-.+|. +..+..++.. +++..+.+...+. ++++.|-+.+ +.-+.+++
T Consensus 17 GLsVlrei~~~LP~e~~iY~~D~a~~PYG~ks~e~I~~~~~----~i~~~l~~~~ik~-lVIACNTASa---~al~~LR~ 88 (269)
T COG0796 17 GLSVLREIRRQLPDEDIIYVGDTARFPYGEKSEEEIRERTL----EIVDFLLERGIKA-LVIACNTASA---VALEDLRE 88 (269)
T ss_pred cHHHHHHHHHHCCCCcEEEEecCCCCCCCCCCHHHHHHHHH----HHHHHHHHcCCCE-EEEecchHHH---HHHHHHHH
Confidence 344444556678899999996554444665 5555555554 4455566665544 4566776652 33344444
Q ss_pred cCC---------------CCCCCEEEE----eechHHHHHHHHHHHhCCCCCCceeeEEeecCCCeeeecccCCCCCCCC
Q 023853 98 VGT---------------YDPKRLLGV----TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSL 158 (276)
Q Consensus 98 ~~~---------------~~~~rviG~----t~lds~R~~~~la~~l~v~~~~v~~~ViG~hgg~~~vp~~s~~~~~~~~ 158 (276)
... ..+++.||+ +.+-+...+.++++. ..++++..+|-. -.+|+..+-...+.+
T Consensus 89 ~~~iPVvGviPaik~A~~~t~~~~IgViaT~~Tvks~~y~~~i~~~----~~~~~V~~la~p---~lV~lvE~g~~~~~~ 161 (269)
T COG0796 89 KFDIPVVGVIPAIKPAVALTRNGRIGVIATPATVKSNAYRDLIARF----APDCEVESLACP---ELVPLVEEGIRGGPV 161 (269)
T ss_pred hCCCCEEEeccchHHHHHhccCCeEEEEeccchhccHHHHHHHHHh----CCCCEEEEecCc---chHHHHhcccccCHH
Confidence 433 345665565 256666666666544 456777777732 355554443222122
Q ss_pred ChhHHHHHHHHHhcCccceeeccCCCCchhHHHHHHHHHHHHHHHh
Q 023853 159 TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLR 204 (276)
Q Consensus 159 ~~~~~~~i~~~v~~~~~~ii~~k~gkg~~~~s~A~a~~~li~ai~~ 204 (276)
..+-.+++...++..+.+++-+ |||+|-. +...++.++.
T Consensus 162 ~~~~l~~~l~~~~~~~~DtlVL----GCTHyPl---l~~~i~~~~~ 200 (269)
T COG0796 162 ALEVLKEYLPPLQEAGPDTLVL----GCTHYPL---LKPEIQQVLG 200 (269)
T ss_pred HHHHHHHHhcchhccCCCEEEE----eCcCcHH---HHHHHHHHhC
Confidence 2333345555556655555543 6788854 5555555554
No 66
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=71.18 E-value=21 Score=33.09 Aligned_cols=71 Identities=13% Similarity=0.100 Sum_probs=44.6
Q ss_pred ceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCcEEEEecCCCCC-cHHHHHHHHH
Q 023853 19 GFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNS-TVPIAAEVFK 96 (276)
Q Consensus 19 ~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~~~vivvtNP~d~-~~~v~t~~~~ 96 (276)
.+..++|+++++++||+||++.- ...++++.+.++.+ .++..++.++|-.+. ..-.+++.+.
T Consensus 64 ~i~~t~d~~~a~~~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~ 127 (341)
T PRK12439 64 TLRATTDFAEAANCADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIE 127 (341)
T ss_pred CeEEECCHHHHHhcCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHH
Confidence 46678899889999999999752 22445555555554 366678888887762 1113455555
Q ss_pred HcCCCCCCCEE
Q 023853 97 KVGTYDPKRLL 107 (276)
Q Consensus 97 ~~~~~~~~rvi 107 (276)
+. +|..++.
T Consensus 128 ~~--l~~~~~~ 136 (341)
T PRK12439 128 EV--LPGHPAG 136 (341)
T ss_pred HH--cCCCCeE
Confidence 54 3444443
No 67
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=70.46 E-value=14 Score=33.29 Aligned_cols=75 Identities=17% Similarity=0.236 Sum_probs=42.4
Q ss_pred cccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-C-CcEEEEecCCCCCcHHHHHH
Q 023853 16 AVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-P-KAIVNLISNPVNSTVPIAAE 93 (276)
Q Consensus 16 ~~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~-p-~~~vivvtNP~d~~~~v~t~ 93 (276)
.+..++.++|++ ++++||+||=+.- .+.++=+++-..+.+++ + +++ ++||-... .++.
T Consensus 69 ~~~~l~~~~~~~-~~~~~d~ViEav~--------------E~~~~K~~l~~~l~~~~~~~~~i--l~snTS~~---~~~~ 128 (286)
T PRK07819 69 ALARLRFTTDLG-DFADRQLVIEAVV--------------EDEAVKTEIFAELDKVVTDPDAV--LASNTSSI---PIMK 128 (286)
T ss_pred HHhCeEeeCCHH-HhCCCCEEEEecc--------------cCHHHHHHHHHHHHHhhCCCCcE--EEECCCCC---CHHH
Confidence 455677899995 7999999888641 22333334444777775 4 544 35554442 1222
Q ss_pred HHHHcCCCCCCCEEEEeec
Q 023853 94 VFKKVGTYDPKRLLGVTML 112 (276)
Q Consensus 94 ~~~~~~~~~~~rviG~t~l 112 (276)
+...... ++|++|+-..
T Consensus 129 -la~~~~~-~~r~~g~hf~ 145 (286)
T PRK07819 129 -LAAATKR-PGRVLGLHFF 145 (286)
T ss_pred -HHhhcCC-CccEEEEecC
Confidence 2233333 4677777433
No 68
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=70.30 E-value=15 Score=37.62 Aligned_cols=72 Identities=15% Similarity=0.283 Sum_probs=47.1
Q ss_pred ccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHH
Q 023853 17 VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFK 96 (276)
Q Consensus 17 ~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d~~~~v~t~~~~ 96 (276)
+..|+.++|++ +++|||+||=+. ..+.++=+++-..+.++++... |+.||-... -+++...
T Consensus 370 ~~~i~~~~~~~-~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~-ilasnTS~l---~i~~la~ 430 (699)
T TIGR02440 370 MALITGTTDYR-GFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHT-IFASNTSSL---PIGQIAA 430 (699)
T ss_pred HcCeEEeCChH-HhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCc-EEEeCCCCC---CHHHHHH
Confidence 45688899996 899999988753 2344555677778888875442 356776664 2333333
Q ss_pred HcCCCCCCCEEEE
Q 023853 97 KVGTYDPKRLLGV 109 (276)
Q Consensus 97 ~~~~~~~~rviG~ 109 (276)
.. . .|+|++|+
T Consensus 431 ~~-~-~p~r~~g~ 441 (699)
T TIGR02440 431 AA-S-RPENVIGL 441 (699)
T ss_pred hc-C-CcccEEEE
Confidence 32 2 46788886
No 69
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=70.00 E-value=23 Score=33.63 Aligned_cols=72 Identities=25% Similarity=0.317 Sum_probs=41.5
Q ss_pred eecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCcEEEEe-cCCCCCcHHHHHHHHHH
Q 023853 20 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNSTVPIAAEVFKK 97 (276)
Q Consensus 20 i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~~~vivv-tNP~d~~~~v~t~~~~~ 97 (276)
+..++++++++++||+||++...|.....+ -+...+.+..+.+.++- +..+++.. |-|..+.-.+...++.+
T Consensus 64 l~~~~~~~~~~~~advvii~vpt~~~~~~~------~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~ 137 (411)
T TIGR03026 64 LRATTDYEDAIRDADVIIICVPTPLKEDGS------PDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILER 137 (411)
T ss_pred eEEECCHHHHHhhCCEEEEEeCCCCCCCCC------cChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHh
Confidence 567789988899999999988776543211 12333444445555553 44455444 44555433344444444
No 70
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=69.77 E-value=20 Score=32.21 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=18.7
Q ss_pred ceecCCCHHhhcCCCcEEEEcC
Q 023853 19 GFLGQQQLEDALTGMDIVIIPA 40 (276)
Q Consensus 19 ~i~~~~d~~~al~daDiVii~a 40 (276)
.++.+.++++++++||+||.+.
T Consensus 68 ~i~~~~~~~~~~~~aD~Vi~av 89 (288)
T PRK09260 68 RLSYSLDLKAAVADADLVIEAV 89 (288)
T ss_pred CeEEeCcHHHhhcCCCEEEEec
Confidence 4667889988999999999875
No 71
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=69.10 E-value=18 Score=32.52 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=17.6
Q ss_pred cceecCCCHHhhcCCCcEEEEcC
Q 023853 18 RGFLGQQQLEDALTGMDIVIIPA 40 (276)
Q Consensus 18 ~~i~~~~d~~~al~daDiVii~a 40 (276)
..++.++|++ ++++||+||.+.
T Consensus 70 ~~i~~~~~~~-~~~~aD~Vieav 91 (292)
T PRK07530 70 ARISTATDLE-DLADCDLVIEAA 91 (292)
T ss_pred hCeEeeCCHH-HhcCCCEEEEcC
Confidence 3467788886 699999999975
No 72
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=68.36 E-value=17 Score=37.32 Aligned_cols=72 Identities=18% Similarity=0.231 Sum_probs=47.6
Q ss_pred cccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CcEEEEecCCCCCcHHHHHHH
Q 023853 16 AVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEV 94 (276)
Q Consensus 16 ~~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~~~vivvtNP~d~~~~v~t~~ 94 (276)
.+..|+.++|++ +++|||+||=+. ..+.++=+++-.++.+.++ +++ +.||-... -+++.
T Consensus 377 ~~~~i~~~~~~~-~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~i--lasnTS~l---~i~~i 436 (714)
T TIGR02437 377 VLNGITPTLSYA-GFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDAI--LASNTSTI---SISLL 436 (714)
T ss_pred HHhCeEEeCCHH-HhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcE--EEECCCCC---CHHHH
Confidence 355688899995 799999988764 2345555667777778874 554 57776663 23443
Q ss_pred HHHcCCCCCCCEEEE
Q 023853 95 FKKVGTYDPKRLLGV 109 (276)
Q Consensus 95 ~~~~~~~~~~rviG~ 109 (276)
... +. .|+|++|+
T Consensus 437 a~~-~~-~p~r~ig~ 449 (714)
T TIGR02437 437 AKA-LK-RPENFCGM 449 (714)
T ss_pred Hhh-cC-CcccEEEE
Confidence 333 33 36789998
No 73
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=67.86 E-value=14 Score=38.17 Aligned_cols=72 Identities=13% Similarity=0.256 Sum_probs=47.3
Q ss_pred cccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CcEEEEecCCCCCcHHHHHHH
Q 023853 16 AVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEV 94 (276)
Q Consensus 16 ~~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~~~vivvtNP~d~~~~v~t~~ 94 (276)
.+..++.++|++ +++|||+||=+. ..|.++=+++-..+.++++ +++ +.||-... -++.+
T Consensus 399 ~~~~i~~~~~~~-~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~i--lasNTSsl---~i~~l 458 (737)
T TIGR02441 399 ILSNLTPTLDYS-GFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHCI--IASNTSAL---PIKDI 458 (737)
T ss_pred HHhCeEEeCCHH-HhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCcE--EEEcCCCC---CHHHH
Confidence 345788899996 899999987543 3355555677778888874 554 56776663 23333
Q ss_pred HHHcCCCCCCCEEEE
Q 023853 95 FKKVGTYDPKRLLGV 109 (276)
Q Consensus 95 ~~~~~~~~~~rviG~ 109 (276)
+.. ... |+|++|+
T Consensus 459 a~~-~~~-p~r~ig~ 471 (737)
T TIGR02441 459 AAV-SSR-PEKVIGM 471 (737)
T ss_pred Hhh-cCC-ccceEEE
Confidence 333 333 5789886
No 74
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=67.59 E-value=4.9 Score=35.48 Aligned_cols=82 Identities=16% Similarity=0.242 Sum_probs=58.3
Q ss_pred cccCCcccccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCCCcH
Q 023853 9 KFDVDSRAVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV 88 (276)
Q Consensus 9 ~~d~~~~~~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d~~~ 88 (276)
++++.-.-+..+..++|.+.+.+|||+|| +-.-.|+++=+++-+.+.+.|+..- |..||-...
T Consensus 73 ~~e~v~~~l~ri~~~tnv~~~v~dadlii--------------EAivEn~diK~~lF~~l~~~ak~~~-il~tNTSSl-- 135 (298)
T KOG2304|consen 73 LEEFVDDTLDRIKTSTNVSDAVSDADLII--------------EAIVENLDIKRKLFKDLDKIAKSST-ILATNTSSL-- 135 (298)
T ss_pred HHHHHHHHHHHHHHcCCHHHhhhhhHHHH--------------HHHHHhHHHHHHHHHHHHhhcccce-EEeecccce--
Confidence 34444445566778999999999999965 3467899999999999999997653 467787764
Q ss_pred HHHHHHHHHcCCCCCCCEEEEe
Q 023853 89 PIAAEVFKKVGTYDPKRLLGVT 110 (276)
Q Consensus 89 ~v~t~~~~~~~~~~~~rviG~t 110 (276)
-++..+.-. -.+.|+.|+-
T Consensus 136 -~lt~ia~~~--~~~srf~GlH 154 (298)
T KOG2304|consen 136 -SLTDIASAT--QRPSRFAGLH 154 (298)
T ss_pred -eHHHHHhhc--cChhhhceee
Confidence 344433322 2467899983
No 75
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=67.44 E-value=13 Score=33.15 Aligned_cols=61 Identities=18% Similarity=0.250 Sum_probs=43.5
Q ss_pred CHHhhcCCCcEEEEcCCCC----------------CCCCC--C-HH-----HHHHHHHHHHHHHHHHHHhhCCCcEEEEe
Q 023853 25 QLEDALTGMDIVIIPAGVP----------------RKPGM--T-RD-----DLFNINAGIVKTLCEGIAKCCPKAIVNLI 80 (276)
Q Consensus 25 d~~~al~daDiVii~ag~~----------------~k~g~--~-r~-----~~~~~N~~i~~~i~~~i~~~~p~~~vivv 80 (276)
...+.+++||++|+|-|.. ..|+. + +. --...+...+..+...|++.+|+..||.-
T Consensus 94 ~~~~~l~~ad~~iiTLGtaevw~~~~~g~vv~nc~k~p~~~F~~~~~~f~~ls~~ei~~~l~~~~~~l~~~nP~~kiilT 173 (251)
T PF08885_consen 94 EVREALEEADVFIITLGTAEVWRDRETGRVVANCHKVPAGQFDPERYEFRNLSVEEILEDLEAIIDLLRSINPDIKIILT 173 (251)
T ss_pred HHHHHHHhCCEEEEeCCcHHHheeCCCCEEEecCCCccccccchhhhhhccCCHHHHHHHHHHHHHHHHhhCCCceEEEE
Confidence 4456899999999998842 11221 1 11 22467888899999999999999966666
Q ss_pred cCCCC
Q 023853 81 SNPVN 85 (276)
Q Consensus 81 tNP~d 85 (276)
--|+=
T Consensus 174 VSPVr 178 (251)
T PF08885_consen 174 VSPVR 178 (251)
T ss_pred eccch
Confidence 56986
No 76
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=66.12 E-value=23 Score=34.79 Aligned_cols=75 Identities=20% Similarity=0.379 Sum_probs=41.8
Q ss_pred ccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHH
Q 023853 17 VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFK 96 (276)
Q Consensus 17 ~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d~~~~v~t~~~~ 96 (276)
+..++.++|++ ++++||+||-+.- .+..+=+++-..+.++++...+ +.||-...- +++...
T Consensus 70 ~~~i~~~~~~~-~l~~aDlVIEav~--------------E~~~vK~~vf~~l~~~~~~~~I-lasnTStl~---i~~iA~ 130 (503)
T TIGR02279 70 LKRLIPVTDLH-ALADAGLVIEAIV--------------ENLEVKKALFAQLEELCPADTI-IASNTSSLS---ITAIAA 130 (503)
T ss_pred HhccEEeCCHH-HhCCCCEEEEcCc--------------CcHHHHHHHHHHHHhhCCCCeE-EEECCCCCC---HHHHHH
Confidence 44577889996 6899999998642 1222223333447777765543 566655532 233223
Q ss_pred HcCCCCCCCEEEEeec
Q 023853 97 KVGTYDPKRLLGVTML 112 (276)
Q Consensus 97 ~~~~~~~~rviG~t~l 112 (276)
.. . .+.|++|+-.+
T Consensus 131 ~~-~-~p~r~~G~HFf 144 (503)
T TIGR02279 131 GL-A-RPERVAGLHFF 144 (503)
T ss_pred hc-C-cccceEEEecc
Confidence 22 2 24567776433
No 77
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=65.90 E-value=20 Score=36.78 Aligned_cols=73 Identities=12% Similarity=0.167 Sum_probs=46.8
Q ss_pred cccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHH
Q 023853 16 AVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVF 95 (276)
Q Consensus 16 ~~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d~~~~v~t~~~ 95 (276)
.+..++.++|++ +++|||+||=+. ..+.++=+++-..+.++++.. .|+.||-... -+++++
T Consensus 377 ~~~~i~~~~~~~-~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~-~ilasNTSsl---~i~~la 437 (715)
T PRK11730 377 VLSSIRPTLDYA-GFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVRED-TILASNTSTI---SISLLA 437 (715)
T ss_pred HHhCeEEeCCHH-HhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCC-cEEEEcCCCC---CHHHHH
Confidence 345688899995 799999988653 224445566677777787544 2457776663 334444
Q ss_pred HHcCCCCCCCEEEE
Q 023853 96 KKVGTYDPKRLLGV 109 (276)
Q Consensus 96 ~~~~~~~~~rviG~ 109 (276)
... . .|.|++|+
T Consensus 438 ~~~-~-~p~r~~g~ 449 (715)
T PRK11730 438 KAL-K-RPENFCGM 449 (715)
T ss_pred hhc-C-CCccEEEE
Confidence 333 3 36789997
No 78
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=65.54 E-value=26 Score=35.99 Aligned_cols=72 Identities=15% Similarity=0.335 Sum_probs=48.0
Q ss_pred cccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCcEEEEecCCCCCcHHHHHHH
Q 023853 16 AVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEV 94 (276)
Q Consensus 16 ~~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~~~vivvtNP~d~~~~v~t~~ 94 (276)
.+..++.++|++ +++|||+||=+. ..|.++=+++-..+.+++ |+++ +.||-... .++++
T Consensus 374 ~~~~i~~~~~~~-~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~i--lasnTS~l---~i~~l 433 (708)
T PRK11154 374 QMALISGTTDYR-GFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHTI--FASNTSSL---PIGQI 433 (708)
T ss_pred HHhcEEEeCChH-HhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCcE--EEECCCCC---CHHHH
Confidence 345688999995 899999988653 345566677778888887 5554 46776653 23443
Q ss_pred HHHcCCCCCCCEEEE
Q 023853 95 FKKVGTYDPKRLLGV 109 (276)
Q Consensus 95 ~~~~~~~~~~rviG~ 109 (276)
... .. .|.|++|+
T Consensus 434 a~~-~~-~p~r~ig~ 446 (708)
T PRK11154 434 AAA-AA-RPEQVIGL 446 (708)
T ss_pred HHh-cC-cccceEEE
Confidence 333 23 35688887
No 79
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=64.38 E-value=3.9 Score=33.06 Aligned_cols=39 Identities=21% Similarity=0.201 Sum_probs=25.4
Q ss_pred ccccccccCCccccccee-cCCCHHhhcCCCcEEEEcCCCC
Q 023853 4 PLAQNKFDVDSRAVRGFL-GQQQLEDALTGMDIVIIPAGVP 43 (276)
Q Consensus 4 ~~~~~~~d~~~~~~~~i~-~~~d~~~al~daDiVii~ag~~ 43 (276)
||++.+..- ...+.... -|.|+++++++|||||.+.|.+
T Consensus 43 pla~lL~~~-gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~ 82 (140)
T cd05212 43 PLQCLLQRD-GATVYSCDWKTIQLQSKVHDADVVVVGSPKP 82 (140)
T ss_pred HHHHHHHHC-CCEEEEeCCCCcCHHHHHhhCCEEEEecCCC
Confidence 566666531 22222222 2348999999999999998866
No 80
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=63.72 E-value=16 Score=33.39 Aligned_cols=109 Identities=17% Similarity=0.229 Sum_probs=65.1
Q ss_pred ccceecCCCHHhhcC--CCcEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEec----CCCCCcH
Q 023853 17 VRGFLGQQQLEDALT--GMDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS----NPVNSTV 88 (276)
Q Consensus 17 ~~~i~~~~d~~~al~--daDiVii~ag~~~k~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvt----NP~d~~~ 88 (276)
+-+|.-...+..+++ +.|+|+-+|..-..| .....+.++.|+---+.+++...+++-+-+|.+-| ||.+
T Consensus 60 igDvrd~~~l~~~~~~~~pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~Ptn--- 136 (293)
T PF02719_consen 60 IGDVRDKERLNRIFEEYKPDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTN--- 136 (293)
T ss_dssp CTSCCHHHHHHHHTT--T-SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--S---
T ss_pred eecccCHHHHHHHHhhcCCCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCc---
Confidence 445555556677888 999999988753322 23578889999999999999999998776666655 6777
Q ss_pred HHHHHHHHHcCCCCCCCEEEEeechHHHHHHHHHHHhCCCC-------CCce-eeEEeecCCCeeeecccC
Q 023853 89 PIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDP-------REVD-VPVVGGHAGVTILPLLSQ 151 (276)
Q Consensus 89 ~v~t~~~~~~~~~~~~rviG~t~lds~R~~~~la~~l~v~~-------~~v~-~~ViG~hgg~~~vp~~s~ 151 (276)
+|-. |-|+...+-...+-.. ..|+ +-|+|..| +.+|.|.+
T Consensus 137 -vmGa--------------------tKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~G--SVip~F~~ 184 (293)
T PF02719_consen 137 -VMGA--------------------TKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSRG--SVIPLFKK 184 (293)
T ss_dssp -HHHH--------------------HHHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGTT--SCHHHHHH
T ss_pred -HHHH--------------------HHHHHHHHHHHHhhhCCCCCcEEEEEEecceecCCC--cHHHHHHH
Confidence 4431 2234333334444332 3355 77888775 67887764
No 81
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=63.29 E-value=26 Score=28.77 Aligned_cols=50 Identities=22% Similarity=0.314 Sum_probs=33.1
Q ss_pred CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCC
Q 023853 31 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 83 (276)
Q Consensus 31 ~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP 83 (276)
...|+|+|..|...-......+.+..| ++++.+.+++..|++.|++++.|
T Consensus 66 ~~pd~Vii~~G~ND~~~~~~~~~~~~~---l~~li~~i~~~~~~~~iiv~~~p 115 (191)
T cd01836 66 TRFDVAVISIGVNDVTHLTSIARWRKQ---LAELVDALRAKFPGARVVVTAVP 115 (191)
T ss_pred CCCCEEEEEecccCcCCCCCHHHHHHH---HHHHHHHHHhhCCCCEEEEECCC
Confidence 478999998876532222223344444 56777888887899988888754
No 82
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=62.99 E-value=26 Score=28.69 Aligned_cols=49 Identities=27% Similarity=0.363 Sum_probs=33.4
Q ss_pred CCcEEEEcCCCCCCC--CC---CHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCC
Q 023853 32 GMDIVIIPAGVPRKP--GM---TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 83 (276)
Q Consensus 32 daDiVii~ag~~~k~--g~---~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP 83 (276)
..|+||+..|...-. +. ...+.+..| ++.+.+.+++..|++.++++|.|
T Consensus 63 ~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~ii~~t~~ 116 (199)
T cd01838 63 QPDLVTIFFGANDAALPGQPQHVPLDEYKEN---LRKIVSHLKSLSPKTKVILITPP 116 (199)
T ss_pred CceEEEEEecCccccCCCCCCcccHHHHHHH---HHHHHHHHHhhCCCCeEEEeCCC
Confidence 799999988864321 11 234555555 56778888887888888888754
No 83
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=61.67 E-value=17 Score=34.18 Aligned_cols=50 Identities=12% Similarity=0.173 Sum_probs=34.0
Q ss_pred cccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh--hC-CCcEEEEec
Q 023853 16 AVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAK--CC-PKAIVNLIS 81 (276)
Q Consensus 16 ~~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~--~~-p~~~vivvt 81 (276)
+-..+..++|+++++++||+||++.- ...++++++.++. +- ++.++|.++
T Consensus 77 Lp~ni~~tsdl~eav~~aDiIvlAVP----------------sq~l~~vl~~l~~~~~l~~~~~iIS~a 129 (365)
T PTZ00345 77 LPDNIVAVSDLKEAVEDADLLIFVIP----------------HQFLESVLSQIKENNNLKKHARAISLT 129 (365)
T ss_pred CCCceEEecCHHHHHhcCCEEEEEcC----------------hHHHHHHHHHhccccccCCCCEEEEEe
Confidence 34567789999999999999988642 3456667777765 32 344555554
No 84
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=61.19 E-value=29 Score=27.44 Aligned_cols=48 Identities=13% Similarity=0.198 Sum_probs=32.8
Q ss_pred CCCcEEEEcCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecC
Q 023853 31 TGMDIVIIPAGVPRK-PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 82 (276)
Q Consensus 31 ~daDiVii~ag~~~k-~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtN 82 (276)
.+.|+|++..|...- .+.+ .+ .-..-++++.+.+++..|++.+++.+-
T Consensus 39 ~~pd~vvi~~G~ND~~~~~~-~~---~~~~~~~~~i~~i~~~~p~~~ii~~~~ 87 (157)
T cd01833 39 AKPDVVLLHLGTNDLVLNRD-PD---TAPDRLRALIDQMRAANPDVKIIVATL 87 (157)
T ss_pred CCCCEEEEeccCcccccCCC-HH---HHHHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 578999998886532 2222 22 334556778888888899998777754
No 85
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=59.62 E-value=24 Score=32.84 Aligned_cols=48 Identities=19% Similarity=0.357 Sum_probs=32.2
Q ss_pred cceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCcEEEEec
Q 023853 18 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS 81 (276)
Q Consensus 18 ~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~~~vivvt 81 (276)
..+..++|+++++++||+||++. | ...++++++.++.+- ++..++.++
T Consensus 68 ~~i~at~dl~eal~~ADiIIlAV--P--------------s~~i~~vl~~l~~~l~~~~~iVs~t 116 (342)
T TIGR03376 68 ANLVAVPDLVEAAKGADILVFVI--P--------------HQFLEGICKQLKGHVKPNARAISCI 116 (342)
T ss_pred CCeEEECCHHHHHhcCCEEEEEC--C--------------hHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 35677899999999999999963 2 344555666666553 344555555
No 86
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=59.01 E-value=6.4 Score=32.63 Aligned_cols=39 Identities=26% Similarity=0.363 Sum_probs=25.8
Q ss_pred ccccccccCCcccccceec-CCCHHhhcCCCcEEEEcCCCC
Q 023853 4 PLAQNKFDVDSRAVRGFLG-QQQLEDALTGMDIVIIPAGVP 43 (276)
Q Consensus 4 ~~~~~~~d~~~~~~~~i~~-~~d~~~al~daDiVii~ag~~ 43 (276)
||++-|+. ...-+..... |.|+++-++.|||||.+.|.|
T Consensus 51 Pla~lL~~-~~atVt~~h~~T~~l~~~~~~ADIVVsa~G~~ 90 (160)
T PF02882_consen 51 PLAMLLLN-KGATVTICHSKTKNLQEITRRADIVVSAVGKP 90 (160)
T ss_dssp HHHHHHHH-TT-EEEEE-TTSSSHHHHHTTSSEEEE-SSST
T ss_pred HHHHHHHh-CCCeEEeccCCCCcccceeeeccEEeeeeccc
Confidence 66666655 3344443333 568999999999999999966
No 87
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=57.26 E-value=43 Score=30.06 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=16.6
Q ss_pred ceecCCCHHhhcCCCcEEEEcC
Q 023853 19 GFLGQQQLEDALTGMDIVIIPA 40 (276)
Q Consensus 19 ~i~~~~d~~~al~daDiVii~a 40 (276)
.+..+++++ ++++||+||.+.
T Consensus 71 ~~~~~~~~~-~~~~aD~Vieav 91 (295)
T PLN02545 71 RIRCTTNLE-ELRDADFIIEAI 91 (295)
T ss_pred ceEeeCCHH-HhCCCCEEEEcC
Confidence 356677785 799999999975
No 88
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=56.29 E-value=61 Score=28.91 Aligned_cols=67 Identities=13% Similarity=0.271 Sum_probs=40.1
Q ss_pred CCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCcEEEEecCCCCCcHHHHHHHHHHcCCC
Q 023853 23 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTY 101 (276)
Q Consensus 23 ~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~~~vivvtNP~d~~~~v~t~~~~~~~~~ 101 (276)
.+|.+++.+++|+||++...+. +.++.+.+..+ .++.+|+.+.|..+ ....+ .+. +
T Consensus 59 ~~~~~~~~~~~d~vilavk~~~----------------~~~~~~~l~~~~~~~~~ii~~~nG~~----~~~~l-~~~--~ 115 (305)
T PRK12921 59 ITDPEELTGPFDLVILAVKAYQ----------------LDAAIPDLKPLVGEDTVIIPLQNGIG----QLEQL-EPY--F 115 (305)
T ss_pred ecCHHHccCCCCEEEEEecccC----------------HHHHHHHHHhhcCCCCEEEEeeCCCC----hHHHH-HHh--C
Confidence 4567666699999999864321 23334444444 35678888899987 33322 222 5
Q ss_pred CCCCEEE-Eeec
Q 023853 102 DPKRLLG-VTML 112 (276)
Q Consensus 102 ~~~rviG-~t~l 112 (276)
|++++++ ++..
T Consensus 116 ~~~~v~~g~~~~ 127 (305)
T PRK12921 116 GRERVLGGVVFI 127 (305)
T ss_pred CcccEEEEEEEE
Confidence 6777774 3444
No 89
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.83 E-value=13 Score=33.84 Aligned_cols=41 Identities=22% Similarity=0.290 Sum_probs=30.0
Q ss_pred cccccccccCCcccccce-ecCCCHHhhcCCCcEEEEcCCCCC
Q 023853 3 IPLAQNKFDVDSRAVRGF-LGQQQLEDALTGMDIVIIPAGVPR 44 (276)
Q Consensus 3 ~~~~~~~~d~~~~~~~~i-~~~~d~~~al~daDiVii~ag~~~ 44 (276)
-||++.|.. +..-|.-. +.|.|+++..++|||||.+.|.|.
T Consensus 172 ~Pla~lL~~-~gatVtv~~s~t~~l~~~~~~ADIVI~avg~~~ 213 (284)
T PRK14179 172 KPMAQLLLD-KNATVTLTHSRTRNLAEVARKADILVVAIGRGH 213 (284)
T ss_pred HHHHHHHHH-CCCEEEEECCCCCCHHHHHhhCCEEEEecCccc
Confidence 588888876 33444433 346789989999999999998663
No 90
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=54.20 E-value=34 Score=33.46 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=18.1
Q ss_pred eecCCCHHhhcCCCcEEEEcC
Q 023853 20 FLGQQQLEDALTGMDIVIIPA 40 (276)
Q Consensus 20 i~~~~d~~~al~daDiVii~a 40 (276)
+..++|+++++++||+|+.+.
T Consensus 68 i~~~~~~~ea~~~aD~Vieav 88 (495)
T PRK07531 68 LTFCASLAEAVAGADWIQESV 88 (495)
T ss_pred eEeeCCHHHHhcCCCEEEEcC
Confidence 677889988999999999864
No 91
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.10 E-value=56 Score=27.04 Aligned_cols=50 Identities=24% Similarity=0.331 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhhC-CCcEEEEecCCCCCcHHHHHHHHHHcCCCCCCCEEEEeechHHHHHHHHHHHhCC
Q 023853 57 NAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGL 127 (276)
Q Consensus 57 N~~i~~~i~~~i~~~~-p~~~vivvtNP~d~~~~v~t~~~~~~~~~~~~rviG~t~lds~R~~~~la~~l~v 127 (276)
...-+.+.+-+|+.|+ -|+-||+++|-+| ++.+|+|. +.|-+ .+|+.||.
T Consensus 108 Sf~svqdw~tqIktysw~naqvilvgnKCD---------------md~eRvis-----~e~g~-~l~~~LGf 158 (193)
T KOG0093|consen 108 SFNSVQDWITQIKTYSWDNAQVILVGNKCD---------------MDSERVIS-----HERGR-QLADQLGF 158 (193)
T ss_pred HHHHHHHHHHHheeeeccCceEEEEecccC---------------Cccceeee-----HHHHH-HHHHHhCh
Confidence 3455778888999998 5788889999999 45677765 33443 36788876
No 92
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=53.82 E-value=74 Score=30.26 Aligned_cols=77 Identities=21% Similarity=0.247 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEec--CCCCCcHHHHHHHHHHcCCCCCCCEEEE-eec--hHHHHHHHHHHHhCCCCC
Q 023853 56 INAGIVKTLCEGIAKCCPKAIVNLIS--NPVNSTVPIAAEVFKKVGTYDPKRLLGV-TML--DVVRANTFVAEVLGLDPR 130 (276)
Q Consensus 56 ~N~~i~~~i~~~i~~~~p~~~vivvt--NP~d~~~~v~t~~~~~~~~~~~~rviG~-t~l--ds~R~~~~la~~l~v~~~ 130 (276)
.+..+++.+++.+++.+.+..++.++ .|.+ +++.+ .++.+ =++|+ |.. -.-.++..|...+++.+.
T Consensus 259 ~T~~ma~aiaegl~~~gv~v~~~~~~~~~~~e----I~~~i-~~a~~----~vvGsPT~~~~~~p~i~~~l~~v~~~~~~ 329 (388)
T COG0426 259 NTEKMAQAIAEGLMKEGVDVEVINLEDADPSE----IVEEI-LDAKG----LVVGSPTINGGAHPPIQTALGYVLALAPK 329 (388)
T ss_pred CHHHHHHHHHHHhhhcCCceEEEEcccCCHHH----HHHHH-hhcce----EEEecCcccCCCCchHHHHHHHHHhccCc
Confidence 34567788999999999999887774 3444 55554 45555 48999 731 124678889999999988
Q ss_pred CceeeEEeecC
Q 023853 131 EVDVPVVGGHA 141 (276)
Q Consensus 131 ~v~~~ViG~hg 141 (276)
.=.+-+.|.+|
T Consensus 330 ~k~~~vfgS~G 340 (388)
T COG0426 330 NKLAGVFGSYG 340 (388)
T ss_pred CceEEEEeccC
Confidence 88899999996
No 93
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=53.48 E-value=31 Score=32.29 Aligned_cols=69 Identities=14% Similarity=0.278 Sum_probs=43.9
Q ss_pred eecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCcEEEEecCCCCC-----cHHHHHH
Q 023853 20 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS-----TVPIAAE 93 (276)
Q Consensus 20 i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~~~vivvtNP~d~-----~~~v~t~ 93 (276)
+.+.+|+.++.+||||+|+.- | -+.+.+++++|..+= |++..|..+.=.+. ..-++++
T Consensus 93 vvAv~dl~ea~~dADilvf~v--P--------------hQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~ 156 (372)
T KOG2711|consen 93 VVAVPDLVEAAKDADILVFVV--P--------------HQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQ 156 (372)
T ss_pred eEecchHHHHhccCCEEEEeC--C--------------hhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHH
Confidence 678999999999999999963 3 234556666776664 55555544322221 0116677
Q ss_pred HHHHcCCCCCC
Q 023853 94 VFKKVGTYDPK 104 (276)
Q Consensus 94 ~~~~~~~~~~~ 104 (276)
.+.+..|+|-.
T Consensus 157 iI~~~lgI~~~ 167 (372)
T KOG2711|consen 157 IIHRALGIPCS 167 (372)
T ss_pred HHHHHhCCCce
Confidence 77777777655
No 94
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=53.40 E-value=29 Score=28.18 Aligned_cols=45 Identities=38% Similarity=0.454 Sum_probs=33.3
Q ss_pred CHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEec
Q 023853 25 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 81 (276)
Q Consensus 25 d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvt 81 (276)
++.++++++|.|+.+.|.+.+ + ...++.+.+.+++.+.. .++.+|
T Consensus 53 ~~~~al~~~d~vi~~~~~~~~------~-----~~~~~~~~~a~~~~~~~-~~v~~s 97 (183)
T PF13460_consen 53 SVKAALKGADAVIHAAGPPPK------D-----VDAAKNIIEAAKKAGVK-RVVYLS 97 (183)
T ss_dssp HHHHHHTTSSEEEECCHSTTT------H-----HHHHHHHHHHHHHTTSS-EEEEEE
T ss_pred hhhhhhhhcchhhhhhhhhcc------c-----ccccccccccccccccc-cceeee
Confidence 457899999999999876654 1 67788888888887644 444444
No 95
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=52.72 E-value=15 Score=26.65 Aligned_cols=19 Identities=37% Similarity=0.613 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 023853 247 PLNEYERAGLEKAKKELAG 265 (276)
Q Consensus 247 ~L~~~E~~~l~~sa~~i~~ 265 (276)
+||++||..|++..++|+.
T Consensus 2 ~LSe~E~r~L~eiEr~L~~ 20 (82)
T PF11239_consen 2 PLSEHEQRRLEEIERQLRA 20 (82)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 6999999999999988875
No 96
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=52.53 E-value=54 Score=26.46 Aligned_cols=49 Identities=24% Similarity=0.331 Sum_probs=32.8
Q ss_pred CcEEEEcCCCCCCC-C--CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 023853 33 MDIVIIPAGVPRKP-G--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 85 (276)
Q Consensus 33 aDiVii~ag~~~k~-g--~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d 85 (276)
.|+||+..|..... + .+.. .+. .-++++.+.+++..|++.+++.+.|..
T Consensus 56 pd~vii~~G~ND~~~~~~~~~~-~~~---~~~~~li~~i~~~~p~~~i~~~~~~~~ 107 (169)
T cd01831 56 PDLVVINLGTNDFSTGNNPPGE-DFT---NAYVEFIEELRKRYPDAPIVLMLGPML 107 (169)
T ss_pred CCEEEEECCcCCCCCCCCCCHH-HHH---HHHHHHHHHHHHHCCCCeEEEEecCcc
Confidence 89999998875421 1 1333 233 345677888888889998877776654
No 97
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=51.74 E-value=40 Score=27.16 Aligned_cols=48 Identities=21% Similarity=0.158 Sum_probs=33.2
Q ss_pred CCCcEEEEcCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecC
Q 023853 31 TGMDIVIIPAGVPRK-PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 82 (276)
Q Consensus 31 ~daDiVii~ag~~~k-~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtN 82 (276)
...|+|++..|...- .+.+ .+.+ ..-++++.+.+++.+|++.+++++.
T Consensus 49 ~~p~~vvi~~G~ND~~~~~~-~~~~---~~~~~~lv~~i~~~~~~~~iil~~~ 97 (171)
T cd04502 49 YQPRRVVLYAGDNDLASGRT-PEEV---LRDFRELVNRIRAKLPDTPIAIISI 97 (171)
T ss_pred CCCCEEEEEEecCcccCCCC-HHHH---HHHHHHHHHHHHHHCCCCcEEEEEe
Confidence 378999998886542 2333 3333 4456778888888999997777774
No 98
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=51.33 E-value=40 Score=30.12 Aligned_cols=69 Identities=20% Similarity=0.250 Sum_probs=48.3
Q ss_pred CCCHHhhcC--CCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCC--CcHHHHHHHHHHc
Q 023853 23 QQQLEDALT--GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN--STVPIAAEVFKKV 98 (276)
Q Consensus 23 ~~d~~~al~--daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d--~~~~v~t~~~~~~ 98 (276)
..|+.++++ ++|++|=+.+.+ | . +=+++.+.|.+++++.+|.-.|||.. .. ..+-+++.
T Consensus 95 ~~~L~eav~~~kptvlIG~S~~~---g-----~------ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~---tpe~a~~~ 157 (254)
T cd00762 95 SGDLEDAVEAAKPDFLIGVSRVG---G-----A------FTPEVIRAXAEINERPVIFALSNPTSKAEC---TAEEAYTA 157 (254)
T ss_pred cCCHHHHHHhhCCCEEEEeCCCC---C-----C------CCHHHHHHHhhcCCCCEEEECCCcCCcccc---CHHHHHhh
Confidence 468999999 999988766544 2 1 12567778888999999999999986 32 33434444
Q ss_pred CCCCCCCEEEEe
Q 023853 99 GTYDPKRLLGVT 110 (276)
Q Consensus 99 ~~~~~~rviG~t 110 (276)
+. .+.++++.
T Consensus 158 t~--G~ai~AtG 167 (254)
T cd00762 158 TE--GRAIFASG 167 (254)
T ss_pred cC--CCEEEEEC
Confidence 42 35688883
No 99
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=51.16 E-value=78 Score=28.84 Aligned_cols=49 Identities=20% Similarity=0.219 Sum_probs=31.2
Q ss_pred eecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCcEEEEecCCCC
Q 023853 20 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVN 85 (276)
Q Consensus 20 i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~~~vivvtNP~d 85 (276)
+..+++++ +++++|+||++...+. . .++.+.+..+ .++.+++..+|..+
T Consensus 62 ~~~~~~~~-~~~~~D~vil~vk~~~------------~----~~~~~~l~~~~~~~~iii~~~nG~~ 111 (341)
T PRK08229 62 IAFSTDPA-ALATADLVLVTVKSAA------------T----ADAAAALAGHARPGAVVVSFQNGVR 111 (341)
T ss_pred eEeccChh-hccCCCEEEEEecCcc------------h----HHHHHHHHhhCCCCCEEEEeCCCCC
Confidence 44566774 7899999999864332 0 1223444444 45677777889877
No 100
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=51.15 E-value=35 Score=27.85 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=33.2
Q ss_pred CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 023853 31 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 84 (276)
Q Consensus 31 ~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~ 84 (276)
.+.|+||+..|...-... . .-..-++++++.+++.+|++.|++++.|.
T Consensus 56 ~~pd~vii~~G~ND~~~~---~---~~~~~~~~~i~~i~~~~p~~~iil~~~~~ 103 (177)
T cd01844 56 VPADLYIIDCGPNIVGAE---A---MVRERLGPLVKGLRETHPDTPILLVSPRY 103 (177)
T ss_pred cCCCEEEEEeccCCCccH---H---HHHHHHHHHHHHHHHHCcCCCEEEEecCC
Confidence 368999998886632111 1 23345677888999999999888887554
No 101
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=50.98 E-value=13 Score=27.12 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=28.2
Q ss_pred CHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCC
Q 023853 25 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 83 (276)
Q Consensus 25 d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP 83 (276)
+..+++++||+||++.-. ..+.++.+.+....++.++|-++||
T Consensus 54 ~~~~~~~~advvilav~p----------------~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 54 DNEEAAQEADVVILAVKP----------------QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp EHHHHHHHTSEEEE-S-G----------------GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred ChHHhhccCCEEEEEECH----------------HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 677899999999997631 2234455555445577788877775
No 102
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=50.02 E-value=56 Score=26.31 Aligned_cols=52 Identities=19% Similarity=0.169 Sum_probs=33.4
Q ss_pred CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEec-CCCC
Q 023853 31 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPVN 85 (276)
Q Consensus 31 ~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvt-NP~d 85 (276)
...|+|++..|...-......+.+..| ++++...+++..|+..+++++ .|..
T Consensus 50 ~~pd~v~i~~G~ND~~~~~~~~~~~~~---~~~l~~~~~~~~p~~~vi~~~~~p~~ 102 (174)
T cd01841 50 KNPSKVFLFLGTNDIGKEVSSNQFIKW---YRDIIEQIREEFPNTKIYLLSVLPVL 102 (174)
T ss_pred cCCCEEEEEeccccCCCCCCHHHHHHH---HHHHHHHHHHHCCCCEEEEEeeCCcC
Confidence 467999998886542221123334444 567788888888988877776 3444
No 103
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=49.48 E-value=1.3e+02 Score=23.87 Aligned_cols=63 Identities=14% Similarity=0.023 Sum_probs=40.3
Q ss_pred CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCc-EEEEecCCCCCcHHHHHHHHHHcCCCCCCCEEEE
Q 023853 31 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA-IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV 109 (276)
Q Consensus 31 ~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~-~vivvtNP~d~~~~v~t~~~~~~~~~~~~rviG~ 109 (276)
.++|+|.+++- .....+.++++++.+++.+++. .+++-+++.+. -... ++..|+ .++|+.
T Consensus 52 ~~adii~iSsl------------~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~---~~~~--l~~~Gv--d~~~~~ 112 (132)
T TIGR00640 52 ADVHVVGVSSL------------AGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQ---DFDE--LKEMGV--AEIFGP 112 (132)
T ss_pred cCCCEEEEcCc------------hhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChH---hHHH--HHHCCC--CEEECC
Confidence 48888888752 3445677899999999987644 44444444441 2322 344565 579999
Q ss_pred -eec
Q 023853 110 -TML 112 (276)
Q Consensus 110 -t~l 112 (276)
|.+
T Consensus 113 gt~~ 116 (132)
T TIGR00640 113 GTPI 116 (132)
T ss_pred CCCH
Confidence 654
No 104
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.37 E-value=9.3 Score=34.76 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=28.0
Q ss_pred ccccccccCCcccccce-ecCCCHHhhcCCCcEEEEcCCCCC
Q 023853 4 PLAQNKFDVDSRAVRGF-LGQQQLEDALTGMDIVIIPAGVPR 44 (276)
Q Consensus 4 ~~~~~~~d~~~~~~~~i-~~~~d~~~al~daDiVii~ag~~~ 44 (276)
||+|-|.. ...-|.-. +-|.|+++.++.|||||.+.|.|.
T Consensus 170 Pla~lL~~-~~aTVtichs~T~~l~~~~~~ADIvIsAvGkp~ 210 (287)
T PRK14173 170 PLAALLLR-EDATVTLAHSKTQDLPAVTRRADVLVVAVGRPH 210 (287)
T ss_pred HHHHHHHH-CCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcC
Confidence 77777764 22333322 236689999999999999999663
No 105
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=49.33 E-value=38 Score=29.56 Aligned_cols=51 Identities=27% Similarity=0.326 Sum_probs=37.7
Q ss_pred CHHhhcCCCcEEEEcCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 023853 25 QLEDALTGMDIVIIPAGVPRKPG----MTRDDLFNINAGIVKTLCEGIAKCCPKA 75 (276)
Q Consensus 25 d~~~al~daDiVii~ag~~~k~g----~~r~~~~~~N~~i~~~i~~~i~~~~p~~ 75 (276)
+..++++++|+||..++.+...+ ....++...|+...+.+.+.+++++...
T Consensus 50 ~~~~~~~~~D~Vvh~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~ 104 (292)
T TIGR01777 50 AESEALEGADAVINLAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAEQKP 104 (292)
T ss_pred chhhhcCCCCEEEECCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcCCCc
Confidence 44568999999999988654322 1245667789999999999999887543
No 106
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=49.32 E-value=24 Score=32.92 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=19.3
Q ss_pred ceecCCCHHhhcCCCcEEEEcC
Q 023853 19 GFLGQQQLEDALTGMDIVIIPA 40 (276)
Q Consensus 19 ~i~~~~d~~~al~daDiVii~a 40 (276)
+++.++|+++++++||+|..+-
T Consensus 213 ~~~~~~d~~ea~~~aDvvyt~~ 234 (338)
T PRK08192 213 KITITDQLEGNLDKADILYLTR 234 (338)
T ss_pred eEEEEcCHHHHHccCCEEEEcC
Confidence 5778899999999999999864
No 107
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=48.66 E-value=81 Score=31.02 Aligned_cols=22 Identities=18% Similarity=0.227 Sum_probs=17.7
Q ss_pred cceecCCCHHhhcCCCcEEEEcC
Q 023853 18 RGFLGQQQLEDALTGMDIVIIPA 40 (276)
Q Consensus 18 ~~i~~~~d~~~al~daDiVii~a 40 (276)
..++.+.|++ ++++||+||-+.
T Consensus 73 ~~i~~~~~~~-~~~~aDlViEav 94 (507)
T PRK08268 73 ARLRPVEALA-DLADCDLVVEAI 94 (507)
T ss_pred hCeEEeCCHH-HhCCCCEEEEcC
Confidence 3477888996 689999999864
No 108
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=48.61 E-value=92 Score=29.88 Aligned_cols=70 Identities=11% Similarity=0.064 Sum_probs=38.9
Q ss_pred eecCCCHHhhcCCCcEEEEcCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHhhCCC-cEEEEe-cCCCCCcHHHHHHHHH
Q 023853 20 FLGQQQLEDALTGMDIVIIPAGVPRKPG-MTRDDLFNINAGIVKTLCEGIAKCCPK-AIVNLI-SNPVNSTVPIAAEVFK 96 (276)
Q Consensus 20 i~~~~d~~~al~daDiVii~ag~~~k~g-~~r~~~~~~N~~i~~~i~~~i~~~~p~-~~vivv-tNP~d~~~~v~t~~~~ 96 (276)
+..+++.+ ++++||++|++-+.|.+.. .... ..+....+.|.++-+. .++|+- |-|..++--++...+.
T Consensus 65 l~~t~~~~-~~~~advvii~Vptp~~~~~~~dl-------~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~ 136 (425)
T PRK15182 65 LKFTSEIE-KIKECNFYIITVPTPINTYKQPDL-------TPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILA 136 (425)
T ss_pred eeEEeCHH-HHcCCCEEEEEcCCCCCCCCCcch-------HHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHH
Confidence 56677776 7999999999988775432 2222 2233333444444433 444443 5666644334444444
Q ss_pred H
Q 023853 97 K 97 (276)
Q Consensus 97 ~ 97 (276)
+
T Consensus 137 ~ 137 (425)
T PRK15182 137 R 137 (425)
T ss_pred h
Confidence 4
No 109
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=48.14 E-value=70 Score=26.03 Aligned_cols=49 Identities=18% Similarity=0.195 Sum_probs=32.3
Q ss_pred CCCcEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecC
Q 023853 31 TGMDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 82 (276)
Q Consensus 31 ~daDiVii~ag~~~k~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtN 82 (276)
...|+|+|..|...-- .....+.+..| ++++.+.+++.+|++.++++|.
T Consensus 66 ~~pd~Vii~~G~ND~~~~~~~~~~~~~~~---l~~li~~i~~~~~~~~iil~t~ 116 (188)
T cd01827 66 FNPNIVIIKLGTNDAKPQNWKYKDDFKKD---YETMIDSFQALPSKPKIYICYP 116 (188)
T ss_pred cCCCEEEEEcccCCCCCCCCccHHHHHHH---HHHHHHHHHHHCCCCeEEEEeC
Confidence 3679999988865421 12223444444 5678888888889987777764
No 110
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=47.59 E-value=45 Score=27.94 Aligned_cols=48 Identities=15% Similarity=0.145 Sum_probs=32.3
Q ss_pred hhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 023853 28 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 85 (276)
Q Consensus 28 ~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d 85 (276)
.-+++||.+|+.-.... +. ...-++...+.+.+++|+.-+|+++|=.|
T Consensus 74 ~~~~~ad~illVfD~t~-----~~-----Sf~~~~~w~~~i~~~~~~~piilVGNK~D 121 (189)
T cd04121 74 SYSRGAQGIILVYDITN-----RW-----SFDGIDRWIKEIDEHAPGVPKILVGNRLH 121 (189)
T ss_pred HHhcCCCEEEEEEECcC-----HH-----HHHHHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 34689999999765432 11 11222345666677778888899999999
No 111
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=47.39 E-value=16 Score=30.34 Aligned_cols=64 Identities=17% Similarity=0.154 Sum_probs=32.8
Q ss_pred ccccCCcccccceecCCCHH-------hhcCCCcEEEEcCCCCCCC-CCCHH---HHHHHHHHHHHHHHHHHHhh
Q 023853 8 NKFDVDSRAVRGFLGQQQLE-------DALTGMDIVIIPAGVPRKP-GMTRD---DLFNINAGIVKTLCEGIAKC 71 (276)
Q Consensus 8 ~~~d~~~~~~~~i~~~~d~~-------~al~daDiVii~ag~~~k~-g~~r~---~~~~~N~~i~~~i~~~i~~~ 71 (276)
.+.++...........+|.+ ++++++|+||+|+|....+ +.++. +.+.+.+....+.-+.|+++
T Consensus 27 ~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G~t~~D~t~ea~~~~~~~~l~~~~e~~~~i~~~ 101 (170)
T cd00885 27 ELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLGPTHDDLTREAVAKAFGRPLVLDEEALERIEAR 101 (170)
T ss_pred HHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCCCCCCChHHHHHHHHhCCCcccCHHHHHHHHHH
Confidence 34444444444334444443 4667899999999865432 33332 22334444444444444443
No 112
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=47.25 E-value=66 Score=25.77 Aligned_cols=49 Identities=20% Similarity=0.229 Sum_probs=32.2
Q ss_pred CCCcEEEEcCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCC
Q 023853 31 TGMDIVIIPAGVPRK-PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 83 (276)
Q Consensus 31 ~daDiVii~ag~~~k-~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP 83 (276)
...|+|++..|...- .+.+ .+.+.+| ++++...+++..|++.|++++-|
T Consensus 47 ~~pd~vvl~~G~ND~~~~~~-~~~~~~~---l~~li~~~~~~~~~~~vi~~~~~ 96 (169)
T cd01828 47 LQPKAIFIMIGINDLAQGTS-DEDIVAN---YRTILEKLRKHFPNIKIVVQSIL 96 (169)
T ss_pred cCCCEEEEEeeccCCCCCCC-HHHHHHH---HHHHHHHHHHHCCCCeEEEEecC
Confidence 467999998886532 2222 3444444 56677778777888888887643
No 113
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.59 E-value=9.6 Score=34.54 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=26.2
Q ss_pred ccccccccCCcccccceecCCCHHhhcCCCcEEEEcCCCC
Q 023853 4 PLAQNKFDVDSRAVRGFLGQQQLEDALTGMDIVIIPAGVP 43 (276)
Q Consensus 4 ~~~~~~~d~~~~~~~~i~~~~d~~~al~daDiVii~ag~~ 43 (276)
||++=++........-.+-|.|+++.+++||+||.+.|.|
T Consensus 167 pla~lL~~~~atVtv~hs~t~~L~~~~~~ADIvI~Avgk~ 206 (279)
T PRK14178 167 PMAALLLNADATVTICHSKTENLKAELRQADILVSAAGKA 206 (279)
T ss_pred HHHHHHHhCCCeeEEEecChhHHHHHHhhCCEEEECCCcc
Confidence 5555554433222222244678999999999999999755
No 114
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=46.19 E-value=21 Score=36.98 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=35.0
Q ss_pred hcCCCcEEEEcCCCCC---CCCCCHHHHH--HHHHHHHHHHHHHHHhhCCCcEEEEe-cCCCC
Q 023853 29 ALTGMDIVIIPAGVPR---KPGMTRDDLF--NINAGIVKTLCEGIAKCCPKAIVNLI-SNPVN 85 (276)
Q Consensus 29 al~daDiVii~ag~~~---k~g~~r~~~~--~~N~~i~~~i~~~i~~~~p~~~vivv-tNP~d 85 (276)
+.++||+||++.|... .+|.+|.++- .... ++.+.+.+.+++.++++. ++|.+
T Consensus 498 ~A~~aD~vIv~vg~~~~~~~E~~Dr~~l~Lp~~Q~----~Li~~v~~~~~~vVvVl~~g~P~~ 556 (765)
T PRK15098 498 AAKQADVVVAVVGEAQGMAHEASSRTDITIPQSQR----DLIAALKATGKPLVLVLMNGRPLA 556 (765)
T ss_pred HHhcCCEEEEEEcCCCCccccCCCcccccCCHHHH----HHHHHHHHhCcCEEEEEeCCceee
Confidence 4689999999888642 4455665332 2333 444555566787777766 89998
No 115
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.93 E-value=12 Score=34.06 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=26.1
Q ss_pred ccccccccCCcccccce-ecCCCHHhhcCCCcEEEEcCCCC
Q 023853 4 PLAQNKFDVDSRAVRGF-LGQQQLEDALTGMDIVIIPAGVP 43 (276)
Q Consensus 4 ~~~~~~~d~~~~~~~~i-~~~~d~~~al~daDiVii~ag~~ 43 (276)
||++-|..- ...|... +.|.|+++.++.|||||.+.|.|
T Consensus 173 Pla~lL~~~-~atVt~~hs~t~~l~~~~~~ADIVV~avG~~ 212 (285)
T PRK14189 173 PMAMLLLQA-GATVTICHSKTRDLAAHTRQADIVVAAVGKR 212 (285)
T ss_pred HHHHHHHHC-CCEEEEecCCCCCHHHHhhhCCEEEEcCCCc
Confidence 666665432 2233322 34678999999999999999854
No 116
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=45.84 E-value=85 Score=28.61 Aligned_cols=58 Identities=21% Similarity=0.132 Sum_probs=38.2
Q ss_pred CHHhhcCC--CcEEEEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecC
Q 023853 25 QLEDALTG--MDIVIIPAGVPRK--PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 82 (276)
Q Consensus 25 d~~~al~d--aDiVii~ag~~~k--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtN 82 (276)
++.+.+++ .|+||-+++.+.. ...+....+..|+.....+.+.+.+.+....++.+|.
T Consensus 66 ~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 66 KLRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred HHHHHHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 34455554 5999999885422 1124466778899888999998877653345666654
No 117
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=45.67 E-value=61 Score=23.82 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=28.1
Q ss_pred eecCCCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHH
Q 023853 217 YVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAK 260 (276)
Q Consensus 217 ~~~~~y~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa 260 (276)
+++|+ .+.|+++|..=.++|..+-+-- |+|.+-+++|+.+.
T Consensus 36 Vieg~--~GlFVaMPs~k~~~g~y~Di~~-Pitke~Re~i~~aV 76 (84)
T PF04026_consen 36 VIEGE--KGLFVAMPSRKSKDGEYKDICH-PITKEFREQIEEAV 76 (84)
T ss_dssp EEEET--TEEEEE--EEE-TTS-EEESEE-ESSHHHHHHHHHHH
T ss_pred EEECC--CCcEEECCCcCCCCCCEEEEEE-ECCHHHHHHHHHHH
Confidence 34443 4689999999999988775554 79999999998764
No 118
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.11 E-value=13 Score=33.82 Aligned_cols=40 Identities=25% Similarity=0.374 Sum_probs=28.5
Q ss_pred ccccccccCCcccccce-ecCCCHHhhcCCCcEEEEcCCCCC
Q 023853 4 PLAQNKFDVDSRAVRGF-LGQQQLEDALTGMDIVIIPAGVPR 44 (276)
Q Consensus 4 ~~~~~~~d~~~~~~~~i-~~~~d~~~al~daDiVii~ag~~~ 44 (276)
||+|=|.. ...-|.-. +-|.|+++.++.|||||.+.|.|.
T Consensus 171 Pla~lL~~-~~atVtichs~T~~l~~~~~~ADIvI~AvG~p~ 211 (282)
T PRK14169 171 PLAGLMVN-HDATVTIAHSKTRNLKQLTKEADILVVAVGVPH 211 (282)
T ss_pred HHHHHHHH-CCCEEEEECCCCCCHHHHHhhCCEEEEccCCcC
Confidence 77777754 23344333 346789989999999999999663
No 119
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=44.79 E-value=81 Score=27.40 Aligned_cols=49 Identities=22% Similarity=0.350 Sum_probs=31.2
Q ss_pred eecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 023853 20 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 85 (276)
Q Consensus 20 i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d 85 (276)
+++..+. +|.+.||+|+++-- +.....+++++...+ .+-++|-.|||.+
T Consensus 49 i~~~~~~-dA~~~aDVVvLAVP------------~~a~~~v~~~l~~~~----~~KIvID~tnp~~ 97 (211)
T COG2085 49 ITGGSNE-DAAALADVVVLAVP------------FEAIPDVLAELRDAL----GGKIVIDATNPIE 97 (211)
T ss_pred cccCChH-HHHhcCCEEEEecc------------HHHHHhHHHHHHHHh----CCeEEEecCCCcc
Confidence 4444544 59999999999852 234444555544443 3557788899964
No 120
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=44.69 E-value=78 Score=31.66 Aligned_cols=104 Identities=21% Similarity=0.310 Sum_probs=71.3
Q ss_pred CCCHHhhcCC--CcEEEEcCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEec----CCCCCcHHHHHHH
Q 023853 23 QQQLEDALTG--MDIVIIPAGVPRKPGM--TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS----NPVNSTVPIAAEV 94 (276)
Q Consensus 23 ~~d~~~al~d--aDiVii~ag~~~k~g~--~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvt----NP~d~~~~v~t~~ 94 (276)
..-++.++++ .|+|+=+|..-..|-. .-.+-.+.|+---+++++...+++=+.++.+-| ||.| +|-
T Consensus 314 ~~~~~~~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtN----vmG-- 387 (588)
T COG1086 314 RDRVERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTN----VMG-- 387 (588)
T ss_pred HHHHHHHHhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCch----Hhh--
Confidence 3446678889 9999998876655654 568889999999999999999998777776665 7777 442
Q ss_pred HHHcCCCCCCCEEEEeechHHHHHHHHHHHhCCCC-------CCce-eeEEeecCCCeeeecccCC
Q 023853 95 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDP-------REVD-VPVVGGHAGVTILPLLSQV 152 (276)
Q Consensus 95 ~~~~~~~~~~rviG~t~lds~R~~~~la~~l~v~~-------~~v~-~~ViG~hgg~~~vp~~s~~ 152 (276)
. |-|+...+...++-+. ..|+ +-|+|..| +.+|+|.+-
T Consensus 388 --------------a----TKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSrG--SViPlFk~Q 433 (588)
T COG1086 388 --------------A----TKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSRG--SVIPLFKKQ 433 (588)
T ss_pred --------------H----HHHHHHHHHHHHhhccCCCCcEEEEEEecceecCCC--CCHHHHHHH
Confidence 2 2233333333332211 1244 77999885 789998763
No 121
>PLN00198 anthocyanidin reductase; Provisional
Probab=44.49 E-value=82 Score=28.51 Aligned_cols=57 Identities=21% Similarity=0.176 Sum_probs=38.6
Q ss_pred CHHhhcCCCcEEEEcCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHhhCCCcEEEEec
Q 023853 25 QLEDALTGMDIVIIPAGVPRKPGMT-RDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 81 (276)
Q Consensus 25 d~~~al~daDiVii~ag~~~k~g~~-r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvt 81 (276)
++++.++++|+||-.|+.......+ ..+++..|+.-...+.+.+.+...-..++.+|
T Consensus 73 ~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~S 130 (338)
T PLN00198 73 SFEAPIAGCDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTS 130 (338)
T ss_pred HHHHHHhcCCEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEee
Confidence 4567788999999988743222123 34567889999999999988864333455554
No 122
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.96 E-value=13 Score=33.83 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=26.9
Q ss_pred cccccccc-CCcccccce-ecCCCHHhhcCCCcEEEEcCCCCC
Q 023853 4 PLAQNKFD-VDSRAVRGF-LGQQQLEDALTGMDIVIIPAGVPR 44 (276)
Q Consensus 4 ~~~~~~~d-~~~~~~~~i-~~~~d~~~al~daDiVii~ag~~~ 44 (276)
||++-|.. -...-|.-. +.|.|+++.++.|||||.+.|.|.
T Consensus 173 Pla~lL~~~~~~atVtvchs~T~~l~~~~k~ADIvV~AvGkp~ 215 (284)
T PRK14193 173 PIGLLLTRRSENATVTLCHTGTRDLAAHTRRADIIVAAAGVAH 215 (284)
T ss_pred HHHHHHhhccCCCEEEEeCCCCCCHHHHHHhCCEEEEecCCcC
Confidence 66666643 112222222 236799999999999999999663
No 123
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=43.86 E-value=25 Score=28.67 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=25.7
Q ss_pred hhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 023853 28 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIA 69 (276)
Q Consensus 28 ~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~ 69 (276)
+.+.++|+|++-+|.|. .....+.+|..+..++.+.++
T Consensus 3 ~~~~~~D~i~lpGg~pe----~~~~~l~~~~~~~~~I~~~~~ 40 (158)
T PF07685_consen 3 ELPPDADGIYLPGGYPE----LFALELSRNRGLKEAIREAAE 40 (158)
T ss_pred CCCCCCCEEEECCCcHH----HHHHHHHHHhCHHHHHHHHHH
Confidence 46889999999998763 344456667666555555544
No 124
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=43.64 E-value=66 Score=30.48 Aligned_cols=62 Identities=21% Similarity=0.314 Sum_probs=35.3
Q ss_pred ceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEe-cCCCC
Q 023853 19 GFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI-SNPVN 85 (276)
Q Consensus 19 ~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivv-tNP~d 85 (276)
.++.+.|..++.++||+||++...|....... -+...+++.++.+.+..++.++|+- |=|..
T Consensus 60 ~l~~t~~~~~~~~~ad~vii~Vpt~~~~k~~~-----~dl~~v~~v~~~i~~~~~g~lVV~~STv~pg 122 (388)
T PRK15057 60 HFNATLDKNEAYRDADYVIIATPTDYDPKTNY-----FNTSSVESVIKDVVEINPYAVMVIKSTVPVG 122 (388)
T ss_pred cEEEecchhhhhcCCCEEEEeCCCCCccCCCC-----cChHHHHHHHHHHHhcCCCCEEEEeeecCCc
Confidence 36677888888999999999877653211111 1223334444444443444444433 55666
No 125
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=43.56 E-value=26 Score=32.05 Aligned_cols=21 Identities=14% Similarity=0.346 Sum_probs=17.9
Q ss_pred ceecCCCHHhhcCCCcEEEEc
Q 023853 19 GFLGQQQLEDALTGMDIVIIP 39 (276)
Q Consensus 19 ~i~~~~d~~~al~daDiVii~ 39 (276)
+|+.+.|+++|++|||+|...
T Consensus 203 ~v~~~~d~~~a~~~aDvvyt~ 223 (301)
T TIGR00670 203 KVRETESLEEVIDEADVLYVT 223 (301)
T ss_pred EEEEECCHHHHhCCCCEEEEC
Confidence 466789999999999988774
No 126
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=42.72 E-value=1.8e+02 Score=27.17 Aligned_cols=108 Identities=22% Similarity=0.301 Sum_probs=62.5
Q ss_pred HHhhcCCCcEEEEcCCCCCCCC----CCHHHHHHHH------HHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHH-HH
Q 023853 26 LEDALTGMDIVIIPAGVPRKPG----MTRDDLFNIN------AGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAA-EV 94 (276)
Q Consensus 26 ~~~al~daDiVii~ag~~~k~g----~~r~~~~~~N------~~i~~~i~~~i~~~~p~~~vivvtNP~d~~~~v~t-~~ 94 (276)
+++.+.|+=|++-.+..+.+|- ++..+++..- .+.+..+.+...++..+ .+.+++-|+. +.+ +-
T Consensus 85 Le~gliDgvv~v~~~~~~~kp~p~va~t~eel~~tagsky~~~~~l~~L~ea~~~~g~~-rvavvG~PC~----i~avrk 159 (332)
T COG1035 85 LEEGLIDGVVVVGSGEEEWKPIPVVATTPEELLETAGSKYTISPNLSALKEAVRKYGLE-RVAVVGTPCQ----IQAVRK 159 (332)
T ss_pred HHcCCceEEEEeCCCccccCCeeEEecChHHHHHhcCCcccCchhHHHHHHHHhhcCCc-eEEEeecchH----HHHHHH
Confidence 4556666644444234444442 4667766521 12333344444445442 5778888998 443 22
Q ss_pred HHHcCCCCCC------CEEEE-e--echHHHHHHHHHHHhCCCCCCceeeEEe
Q 023853 95 FKKVGTYDPK------RLLGV-T--MLDVVRANTFVAEVLGLDPREVDVPVVG 138 (276)
Q Consensus 95 ~~~~~~~~~~------rviG~-t--~lds~R~~~~la~~l~v~~~~v~~~ViG 138 (276)
+++....-++ =+||+ | +.+-.-++.+|-+.+|+++.+|.-.-++
T Consensus 160 ~~~~~~~~~~~~~~i~~~iGlfC~e~f~y~~l~~~l~e~~gvd~~dV~k~di~ 212 (332)
T COG1035 160 LQKFDLGLKHRREKIVYVIGLFCMENFSYEGLKKFLEEDLGVDPEDVEKMDIR 212 (332)
T ss_pred HhhccccccccccceEEEEeeecCCCcCHHHHHHHHHHHhCCCHHHeEEEEee
Confidence 3333322221 23899 6 4545457899999999999999977776
No 127
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=42.68 E-value=59 Score=32.60 Aligned_cols=56 Identities=20% Similarity=0.191 Sum_probs=37.0
Q ss_pred CHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEec
Q 023853 25 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 81 (276)
Q Consensus 25 d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvt 81 (276)
++++++.++|+||..+|............+..|..-...+++.+.+.+- +.||++|
T Consensus 152 sI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agV-gRIV~VS 207 (576)
T PLN03209 152 QIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKV-NHFILVT 207 (576)
T ss_pred HHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCC-CEEEEEc
Confidence 5566789999999998865432222334456677777888888877653 3455554
No 128
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=42.58 E-value=98 Score=27.53 Aligned_cols=58 Identities=16% Similarity=0.094 Sum_probs=39.4
Q ss_pred CCCHHhhcCCCcEEEEcCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhh-CCCcEEEEec
Q 023853 23 QQQLEDALTGMDIVIIPAGVPRKP-GMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLIS 81 (276)
Q Consensus 23 ~~d~~~al~daDiVii~ag~~~k~-g~~r~~~~~~N~~i~~~i~~~i~~~-~p~~~vivvt 81 (276)
..+++++++++|+||-.++..... .....+.+..|+.-...+.+.+.+. ..+ .++.+|
T Consensus 67 ~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~-~~v~~S 126 (322)
T PLN02662 67 EGSFDSVVDGCEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVK-RVVVTS 126 (322)
T ss_pred cchHHHHHcCCCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEcc
Confidence 345777899999999988753211 1223467788999999999988776 333 444443
No 129
>PRK00549 competence damage-inducible protein A; Provisional
Probab=42.56 E-value=28 Score=33.28 Aligned_cols=40 Identities=15% Similarity=0.138 Sum_probs=27.0
Q ss_pred cccccccCCcccccceecCCCHH-------hhcCCCcEEEEcCCCCC
Q 023853 5 LAQNKFDVDSRAVRGFLGQQQLE-------DALTGMDIVIIPAGVPR 44 (276)
Q Consensus 5 ~~~~~~d~~~~~~~~i~~~~d~~-------~al~daDiVii~ag~~~ 44 (276)
|+-.+.++.....+.....+|.+ ++.+++|+||+++|...
T Consensus 25 L~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVItTGGlGp 71 (414)
T PRK00549 25 LSEKLAELGIDVYHQTVVGDNPERLLSALEIAEERSDLIITTGGLGP 71 (414)
T ss_pred HHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHhccCCCEEEECCCCCC
Confidence 34456666666665555566654 45678999999999643
No 130
>PRK01215 competence damage-inducible protein A; Provisional
Probab=41.99 E-value=24 Score=31.66 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=25.4
Q ss_pred cccccccCCcccccceecCCCHH-------hhcCCCcEEEEcCCCC
Q 023853 5 LAQNKFDVDSRAVRGFLGQQQLE-------DALTGMDIVIIPAGVP 43 (276)
Q Consensus 5 ~~~~~~d~~~~~~~~i~~~~d~~-------~al~daDiVii~ag~~ 43 (276)
|+..++++.....+.....+|.+ ++++++|+||+++|..
T Consensus 28 l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~g 73 (264)
T PRK01215 28 IARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDRADVVVSTGGLG 73 (264)
T ss_pred HHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 34456666666555445555554 4677789999999854
No 131
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=41.96 E-value=43 Score=30.71 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=18.4
Q ss_pred ceecCCCHHhhcCCCcEEEE
Q 023853 19 GFLGQQQLEDALTGMDIVII 38 (276)
Q Consensus 19 ~i~~~~d~~~al~daDiVii 38 (276)
+|+.++|+++|.+|||+|..
T Consensus 208 ~i~~t~d~~eAv~gADvvyT 227 (310)
T COG0078 208 KITLTEDPEEAVKGADVVYT 227 (310)
T ss_pred eEEEecCHHHHhCCCCEEEe
Confidence 68899999999999999877
No 132
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=41.64 E-value=94 Score=23.32 Aligned_cols=41 Identities=17% Similarity=0.170 Sum_probs=22.7
Q ss_pred cCCCcEEEE-cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCcEEEEec
Q 023853 30 LTGMDIVII-PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS 81 (276)
Q Consensus 30 l~daDiVii-~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~~~vivvt 81 (276)
-.+||++|+ |.++-. ..-.++++ ....+.+.. |+.+|++.+
T Consensus 34 ~e~AD~iiiNTC~V~~----------~Ae~k~~~-~i~~l~~~~~~~~~ivv~G 76 (98)
T PF00919_consen 34 PEEADVIIINTCTVRE----------SAEQKSRN-RIRKLKKLKKPGAKIVVTG 76 (98)
T ss_pred cccCCEEEEEcCCCCc----------HHHHHHHH-HHHHHHHhcCCCCEEEEEe
Confidence 368999988 566542 11122323 333344444 888887775
No 133
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.53 E-value=14 Score=33.83 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=30.1
Q ss_pred cccccccccCCcccccce-ecCCCHHhhcCCCcEEEEcCCCC
Q 023853 3 IPLAQNKFDVDSRAVRGF-LGQQQLEDALTGMDIVIIPAGVP 43 (276)
Q Consensus 3 ~~~~~~~~d~~~~~~~~i-~~~~d~~~al~daDiVii~ag~~ 43 (276)
-|+++.|.. +..-|.-+ +-+.++++..+.|||||...|.+
T Consensus 173 ~PmA~~L~~-~gatVtv~~~~t~~l~e~~~~ADIVIsavg~~ 213 (301)
T PRK14194 173 KPMAALLLQ-AHCSVTVVHSRSTDAKALCRQADIVVAAVGRP 213 (301)
T ss_pred HHHHHHHHH-CCCEEEEECCCCCCHHHHHhcCCEEEEecCCh
Confidence 478888876 33444444 44678999999999999998866
No 134
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=41.45 E-value=75 Score=28.20 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=40.0
Q ss_pred CHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEec
Q 023853 25 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 81 (276)
Q Consensus 25 d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvt 81 (276)
+++++++++|+||..++.......+..+....|+.....+++.+.+.+-+ .++.+|
T Consensus 57 ~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S 112 (328)
T TIGR03466 57 SLRKAVAGCRALFHVAADYRLWAPDPEEMYAANVEGTRNLLRAALEAGVE-RVVYTS 112 (328)
T ss_pred HHHHHHhCCCEEEEeceecccCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEe
Confidence 46677889999999886533234456777888999999999988876533 445554
No 135
>PLN02527 aspartate carbamoyltransferase
Probab=41.43 E-value=22 Score=32.55 Aligned_cols=22 Identities=9% Similarity=0.155 Sum_probs=18.9
Q ss_pred ceecCCCHHhhcCCCcEEEEcC
Q 023853 19 GFLGQQQLEDALTGMDIVIIPA 40 (276)
Q Consensus 19 ~i~~~~d~~~al~daDiVii~a 40 (276)
++..++|++++++|||+|..+.
T Consensus 205 ~~~~~~d~~~a~~~aDvvyt~~ 226 (306)
T PLN02527 205 EWEESSDLMEVASKCDVLYQTR 226 (306)
T ss_pred EEEEEcCHHHHhCCCCEEEECC
Confidence 4677899999999999999853
No 136
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=41.30 E-value=8.7 Score=29.16 Aligned_cols=27 Identities=30% Similarity=0.451 Sum_probs=20.9
Q ss_pred ccceecCCCHHhhcCCCcEEEEcCCCC
Q 023853 17 VRGFLGQQQLEDALTGMDIVIIPAGVP 43 (276)
Q Consensus 17 ~~~i~~~~d~~~al~daDiVii~ag~~ 43 (276)
..++..++++++++++||.||++...+
T Consensus 51 ~~~~~~~~~~~~~~~~~D~vvl~t~h~ 77 (106)
T PF03720_consen 51 LEGVEVCDDLEEALKGADAVVLATDHD 77 (106)
T ss_dssp HHCEEEESSHHHHHTTESEEEESS--G
T ss_pred ccceEEecCHHHHhcCCCEEEEEecCH
Confidence 345777788999999999999987654
No 137
>PLN02214 cinnamoyl-CoA reductase
Probab=41.21 E-value=85 Score=28.71 Aligned_cols=55 Identities=20% Similarity=0.135 Sum_probs=40.1
Q ss_pred CCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEec
Q 023853 23 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 81 (276)
Q Consensus 23 ~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvt 81 (276)
..+++++++++|+||-+++... ....+.+..|+.-...+.+.+.+.+.+ .++.+|
T Consensus 72 ~~~~~~~~~~~d~Vih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~v~-r~V~~S 126 (342)
T PLN02214 72 YEALKAAIDGCDGVFHTASPVT---DDPEQMVEPAVNGAKFVINAAAEAKVK-RVVITS 126 (342)
T ss_pred hHHHHHHHhcCCEEEEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEec
Confidence 3456778899999999988542 345677888999999999998887543 344443
No 138
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.98 E-value=15 Score=33.48 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=20.1
Q ss_pred ecCCCHHhhcCCCcEEEEcCCCCC
Q 023853 21 LGQQQLEDALTGMDIVIIPAGVPR 44 (276)
Q Consensus 21 ~~~~d~~~al~daDiVii~ag~~~ 44 (276)
+-|.|+++.++.|||||.+.|.|.
T Consensus 193 s~t~~l~~~~~~ADIVI~AvG~p~ 216 (286)
T PRK14184 193 SRTPDLAEECREADFLFVAIGRPR 216 (286)
T ss_pred CCchhHHHHHHhCCEEEEecCCCC
Confidence 346789999999999999998663
No 139
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=40.97 E-value=16 Score=34.04 Aligned_cols=61 Identities=26% Similarity=0.393 Sum_probs=39.3
Q ss_pred cccccccccCCccccccee-cCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEe-
Q 023853 3 IPLAQNKFDVDSRAVRGFL-GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI- 80 (276)
Q Consensus 3 ~~~~~~~~d~~~~~~~~i~-~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivv- 80 (276)
-||+|=|.. ...-|.-.. -|.|+++.++.|||||.+.|.|. .-+.++++ |.+++|-+
T Consensus 228 kPla~LL~~-~~ATVTicHs~T~nl~~~~~~ADIvIsAvGkp~---~v~~d~vk-----------------~GavVIDVG 286 (345)
T PLN02897 228 LPMSLLLQR-HDATVSTVHAFTKDPEQITRKADIVIAAAGIPN---LVRGSWLK-----------------PGAVVIDVG 286 (345)
T ss_pred HHHHHHHHH-CCCEEEEEcCCCCCHHHHHhhCCEEEEccCCcC---ccCHHHcC-----------------CCCEEEEcc
Confidence 377777764 233343332 36789999999999999999663 33333322 67788777
Q ss_pred cCCC
Q 023853 81 SNPV 84 (276)
Q Consensus 81 tNP~ 84 (276)
.|+.
T Consensus 287 in~~ 290 (345)
T PLN02897 287 TTPV 290 (345)
T ss_pred cccc
Confidence 4664
No 140
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=40.81 E-value=1.4e+02 Score=26.50 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=30.3
Q ss_pred ecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCcEEEEecCCCC
Q 023853 21 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVN 85 (276)
Q Consensus 21 ~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~~~vivvtNP~d 85 (276)
..+.+.++ .+++|+||++..... ..++.+.+..+ .++..|+.+.|..+
T Consensus 56 ~~~~~~~~-~~~~d~vila~k~~~----------------~~~~~~~l~~~l~~~~~iv~~~nG~~ 104 (304)
T PRK06522 56 LAADDPAE-LGPQDLVILAVKAYQ----------------LPAALPSLAPLLGPDTPVLFLQNGVG 104 (304)
T ss_pred cCCCChhH-cCCCCEEEEeccccc----------------HHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 34566764 499999999864321 22233333333 46678888999887
No 141
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=40.45 E-value=57 Score=27.05 Aligned_cols=68 Identities=15% Similarity=0.255 Sum_probs=39.7
Q ss_pred cccccccCCcccccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 023853 5 LAQNKFDVDSRAVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 84 (276)
Q Consensus 5 ~~~~~~d~~~~~~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~ 84 (276)
+.+++-|.+... .+... .+..+++||.+|+.-.... + +-+. + +.+...+.+++++|+..+++++|=.
T Consensus 53 ~~l~iwDtaG~e--~~~~~--~~~~~~~ad~~ilvyDit~-----~-~Sf~-~--~~~~w~~~i~~~~~~~piilVgNK~ 119 (182)
T cd04172 53 IELSLWDTSGSP--YYDNV--RPLSYPDSDAVLICFDISR-----P-ETLD-S--VLKKWKGEIQEFCPNTKMLLVGCKS 119 (182)
T ss_pred EEEEEEECCCch--hhHhh--hhhhcCCCCEEEEEEECCC-----H-HHHH-H--HHHHHHHHHHHHCCCCCEEEEeECh
Confidence 346677765431 12111 1235789999988765432 2 1121 1 1234555667777888888999999
Q ss_pred C
Q 023853 85 N 85 (276)
Q Consensus 85 d 85 (276)
|
T Consensus 120 D 120 (182)
T cd04172 120 D 120 (182)
T ss_pred h
Confidence 9
No 142
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=40.04 E-value=16 Score=34.28 Aligned_cols=40 Identities=23% Similarity=0.236 Sum_probs=28.0
Q ss_pred ccccccccCCccccccee-cCCCHHhhcCCCcEEEEcCCCCC
Q 023853 4 PLAQNKFDVDSRAVRGFL-GQQQLEDALTGMDIVIIPAGVPR 44 (276)
Q Consensus 4 ~~~~~~~d~~~~~~~~i~-~~~d~~~al~daDiVii~ag~~~ 44 (276)
||+|=|.. ...-|.-.. -|.|+++-++.|||||.+.|.|.
T Consensus 246 PLa~LL~~-~~ATVTicHs~T~nl~~~~r~ADIVIsAvGkp~ 286 (364)
T PLN02616 246 PAALLLQR-EDATVSIVHSRTKNPEEITREADIIISAVGQPN 286 (364)
T ss_pred HHHHHHHH-CCCeEEEeCCCCCCHHHHHhhCCEEEEcCCCcC
Confidence 77777765 223333332 36789999999999999999663
No 143
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=39.91 E-value=39 Score=31.43 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=24.4
Q ss_pred ccccceecCCCHHhhcCCCcEEEEcCCCCCC
Q 023853 15 RAVRGFLGQQQLEDALTGMDIVIIPAGVPRK 45 (276)
Q Consensus 15 ~~~~~i~~~~d~~~al~daDiVii~ag~~~k 45 (276)
|+=+....++|.+.+++.||+|++....|.|
T Consensus 61 crgknlffstdiekai~eadlvfisvntptk 91 (481)
T KOG2666|consen 61 CRGKNLFFSTDIEKAIKEADLVFISVNTPTK 91 (481)
T ss_pred hcCCceeeecchHHHhhhcceEEEEecCCcc
Confidence 3445566789999999999999997766643
No 144
>PLN02650 dihydroflavonol-4-reductase
Probab=39.79 E-value=1e+02 Score=28.11 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=39.8
Q ss_pred CCHHhhcCCCcEEEEcCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHhhCCCcEEEEec
Q 023853 24 QQLEDALTGMDIVIIPAGVPRKPGMT-RDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 81 (276)
Q Consensus 24 ~d~~~al~daDiVii~ag~~~k~g~~-r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvt 81 (276)
..+++.++++|+||-.++.......+ ..+.+..|+.-...+.+.+.+++.-..+|.+|
T Consensus 69 ~~~~~~~~~~d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~S 127 (351)
T PLN02650 69 GSFDDAIRGCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTS 127 (351)
T ss_pred hhHHHHHhCCCEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEec
Confidence 35667888999999988753211122 24677889999999999988865334555554
No 145
>TIGR03289 frhB coenzyme F420 hydrogenase, subunit beta. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. The N- and C-terminal domains of this protein are modelled by pfam04422 and pfam04423 respectively.
Probab=38.95 E-value=1.1e+02 Score=27.51 Aligned_cols=66 Identities=9% Similarity=0.158 Sum_probs=41.4
Q ss_pred HHhhCCCcEEEEecCCCCCcHHHHHH-HHHHcC-CCC--CCCE---EEE-e--echHHHHHHHHHHHhCCCCCCceeeEE
Q 023853 68 IAKCCPKAIVNLISNPVNSTVPIAAE-VFKKVG-TYD--PKRL---LGV-T--MLDVVRANTFVAEVLGLDPREVDVPVV 137 (276)
Q Consensus 68 i~~~~p~~~vivvtNP~d~~~~v~t~-~~~~~~-~~~--~~rv---iG~-t--~lds~R~~~~la~~l~v~~~~v~~~Vi 137 (276)
+.+..+...+.+++-|++ +.+- .+++.. ++. .++| ||+ | ..+...++.+|.++.|+++.+|..+-+
T Consensus 86 ~~~~~~~~~va~vGtPCq----i~alr~l~~~~~~~~~~~d~i~~~Igl~C~g~~s~~~~~~~l~~~~g~~~~~v~~~~~ 161 (275)
T TIGR03289 86 AVREYGLEKIGTVGTPCQ----VMGLRKAQTYPVGVRNVVDKIALSIGIYCMENFPYESLKTFINDKCGVTMEQVTKMDI 161 (275)
T ss_pred HHHhcCCCEEEEEccchH----HHHHHHHHhccccccccccceEEEEeeeCCCCCCHHHHHHHHHHhcCCCHHHccEEEe
Confidence 333334678999999999 5542 122211 111 1343 788 7 355467889998889999888875555
No 146
>PRK10433 putative RNA methyltransferase; Provisional
Probab=38.79 E-value=39 Score=29.62 Aligned_cols=63 Identities=10% Similarity=-0.025 Sum_probs=37.0
Q ss_pred ccccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-C-CcEEEEecCCCC
Q 023853 15 RAVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-P-KAIVNLISNPVN 85 (276)
Q Consensus 15 ~~~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~-p-~~~vivvtNP~d 85 (276)
..|.......++++|++|++++|-|.+..+.... .. .-.++.++.+.... + .-+.++++|=..
T Consensus 53 d~L~~a~v~~tL~eAl~d~~~vigttar~~~~~~--~~------~~p~~~~~~l~~~~~~~~~~alvfG~E~~ 117 (228)
T PRK10433 53 DILDNAKVFDTLAEALHDVDFTVATTARSRAKFH--YY------ATPAELVPLLEEKSSWMSHAALVFGREDS 117 (228)
T ss_pred HHhcCceEECCHHHHHHhCCeEEEEccCCCCCCC--cc------cCHHHHHHHHHhhhcccCCEEEEECCCCC
Confidence 3455566678999999999999998776543211 10 01123344444443 2 336778877544
No 147
>cd01823 SEST_like SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.
Probab=38.52 E-value=1.1e+02 Score=26.38 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEecC
Q 023853 58 AGIVKTLCEGIAKCCPKAIVNLISN 82 (276)
Q Consensus 58 ~~i~~~i~~~i~~~~p~~~vivvtN 82 (276)
..-++.+.+.|++.+|++.|++++-
T Consensus 130 ~~~l~~~l~~i~~~~p~a~I~~~gy 154 (259)
T cd01823 130 GARLKAVLDRIRERAPNARVVVVGY 154 (259)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEecc
Confidence 3456778888888899998877773
No 148
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=38.14 E-value=96 Score=26.15 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=30.8
Q ss_pred CCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEec
Q 023853 32 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 81 (276)
Q Consensus 32 daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvt 81 (276)
..|+|+|..|...-....-.+.+. .-+++++..+++..|++.|++++
T Consensus 89 ~pd~VvI~~G~ND~~~~~~~~~~~---~~l~~ii~~l~~~~P~~~Iil~~ 135 (214)
T cd01820 89 NPKVVVLLIGTNNIGHTTTAEEIA---EGILAIVEEIREKLPNAKILLLG 135 (214)
T ss_pred CCCEEEEEecccccCCCCCHHHHH---HHHHHHHHHHHHHCCCCeEEEEe
Confidence 589999988876421111222233 34667888888888999777776
No 149
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=37.94 E-value=79 Score=28.96 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=30.1
Q ss_pred CCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEec
Q 023853 23 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 81 (276)
Q Consensus 23 ~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvt 81 (276)
..++++.+++||+|++..-.. ..|..++. .+.+.+..|++++|+++
T Consensus 181 ~~~l~e~l~~aDvvv~~lPlt-----------~~T~~li~--~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 181 REELSAFLSQTRVLINLLPNT-----------PETVGIIN--QQLLEQLPDGAYLLNLA 226 (312)
T ss_pred cccHHHHHhcCCEEEECCCCC-----------HHHHHHhH--HHHHhcCCCCcEEEECC
Confidence 457899999999999975321 11222222 34455566888999996
No 150
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=37.83 E-value=87 Score=28.14 Aligned_cols=50 Identities=12% Similarity=0.274 Sum_probs=32.2
Q ss_pred eecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCcEEEEecCCCC
Q 023853 20 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVN 85 (276)
Q Consensus 20 i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~~~vivvtNP~d 85 (276)
+..+.++++++++||+||++... ..++++.+.+..+ .++.+++.++|-.+
T Consensus 59 ~~~~~~~~~~~~~~D~vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 59 LRATTDLAEALADADLILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred eEEeCCHHHHHhCCCEEEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 45567888889999999997631 1123344445554 35677887876554
No 151
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.72 E-value=18 Score=32.92 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=26.5
Q ss_pred ccccccccCCcccccce-ecCCCHHhhcCCCcEEEEcCCCC
Q 023853 4 PLAQNKFDVDSRAVRGF-LGQQQLEDALTGMDIVIIPAGVP 43 (276)
Q Consensus 4 ~~~~~~~d~~~~~~~~i-~~~~d~~~al~daDiVii~ag~~ 43 (276)
||+|=|..- ..-|.-. +-|.|+++-++.|||||.+.|.|
T Consensus 174 Pla~lL~~~-~ATVtichs~T~~L~~~~~~ADIvV~AvGkp 213 (288)
T PRK14171 174 PLSALLLKE-NCSVTICHSKTHNLSSITSKADIVVAAIGSP 213 (288)
T ss_pred HHHHHHHHC-CCEEEEeCCCCCCHHHHHhhCCEEEEccCCC
Confidence 666666541 2223222 24678998899999999999965
No 152
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.61 E-value=19 Score=32.87 Aligned_cols=39 Identities=28% Similarity=0.307 Sum_probs=27.4
Q ss_pred ccccccccCCcccccce-ecCCCHHhhcCCCcEEEEcCCCC
Q 023853 4 PLAQNKFDVDSRAVRGF-LGQQQLEDALTGMDIVIIPAGVP 43 (276)
Q Consensus 4 ~~~~~~~d~~~~~~~~i-~~~~d~~~al~daDiVii~ag~~ 43 (276)
||+|=|.. ...-|.-. +.|.|+++-++.|||||.+.|.|
T Consensus 173 Pla~lL~~-~~atVtv~hs~T~~l~~~~~~ADIvIsAvGkp 212 (297)
T PRK14186 173 PLALMLLA-ANATVTIAHSRTQDLASITREADILVAAAGRP 212 (297)
T ss_pred HHHHHHHH-CCCEEEEeCCCCCCHHHHHhhCCEEEEccCCc
Confidence 67766654 23344333 33678998899999999999965
No 153
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=37.59 E-value=1.6e+02 Score=22.19 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=29.5
Q ss_pred CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CcEEEEecCCCC
Q 023853 31 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVN 85 (276)
Q Consensus 31 ~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~~~vivvtNP~d 85 (276)
.++|+|.++... ..+.+-++++++.+++.+| +..+++-++|..
T Consensus 49 ~~pdvV~iS~~~------------~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~ 92 (119)
T cd02067 49 EDADAIGLSGLL------------TTHMTLMKEVIEELKEAGLDDIPVLVGGAIVT 92 (119)
T ss_pred cCCCEEEEeccc------------cccHHHHHHHHHHHHHcCCCCCeEEEECCCCC
Confidence 366777776542 2345667888888888877 666777777766
No 154
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.46 E-value=19 Score=32.84 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=27.9
Q ss_pred ccccccccCCccccccee-cCCCHHhhcCCCcEEEEcCCCCC
Q 023853 4 PLAQNKFDVDSRAVRGFL-GQQQLEDALTGMDIVIIPAGVPR 44 (276)
Q Consensus 4 ~~~~~~~d~~~~~~~~i~-~~~d~~~al~daDiVii~ag~~~ 44 (276)
||++-|.. ...-|.-.. -|.|+++-++.|||||.+.|.|.
T Consensus 179 Pla~lL~~-~~atVtv~hs~T~~l~~~~~~ADIvv~AvG~p~ 219 (287)
T PRK14176 179 PMAAMLLN-RNATVSVCHVFTDDLKKYTLDADILVVATGVKH 219 (287)
T ss_pred HHHHHHHH-CCCEEEEEeccCCCHHHHHhhCCEEEEccCCcc
Confidence 67766654 223333332 46799989999999999999763
No 155
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=37.41 E-value=38 Score=27.62 Aligned_cols=51 Identities=14% Similarity=0.247 Sum_probs=31.7
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 023853 34 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 84 (276)
Q Consensus 34 DiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~ 84 (276)
|.||.++|..++-|..-.-+-..+-+++....+.+.+...+-++++++++.
T Consensus 1 ~~iIla~G~s~R~g~~K~ll~~~g~pll~~~i~~l~~~~~~~iivv~~~~~ 51 (188)
T TIGR03310 1 DAIILAAGLSSRMGQNKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEA 51 (188)
T ss_pred CeEEECCCCcccCCCCceecccCCeeHHHHHHHHHHHcCCCcEEEEeCCcH
Confidence 568888887765543211111245788888888887776666666655543
No 156
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.35 E-value=19 Score=32.82 Aligned_cols=40 Identities=15% Similarity=0.332 Sum_probs=26.5
Q ss_pred ccccccccCCcccccce-ecCCCHHhhcCCCcEEEEcCCCCC
Q 023853 4 PLAQNKFDVDSRAVRGF-LGQQQLEDALTGMDIVIIPAGVPR 44 (276)
Q Consensus 4 ~~~~~~~d~~~~~~~~i-~~~~d~~~al~daDiVii~ag~~~ 44 (276)
||++-|.... ..+.-. +-|.|+++.+++|||||.+.|.|.
T Consensus 173 pla~lL~~~g-atVtv~~s~t~~l~~~~~~ADIVIsAvg~p~ 213 (286)
T PRK14175 173 PVSKLLLQKN-ASVTILHSRSKDMASYLKDADVIVSAVGKPG 213 (286)
T ss_pred HHHHHHHHCC-CeEEEEeCCchhHHHHHhhCCEEEECCCCCc
Confidence 5666665432 233222 235688889999999999998763
No 157
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=37.25 E-value=1.4e+02 Score=26.72 Aligned_cols=59 Identities=19% Similarity=0.095 Sum_probs=39.4
Q ss_pred CCCHHhhcCCCcEEEEcCCCCCCC-C-CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEec
Q 023853 23 QQQLEDALTGMDIVIIPAGVPRKP-G-MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 81 (276)
Q Consensus 23 ~~d~~~al~daDiVii~ag~~~k~-g-~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvt 81 (276)
..++++++++.|+||-.+|..... . ....+.+..|..-...+.+.+.++...+.++.+|
T Consensus 68 ~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~S 128 (325)
T PLN02989 68 EGSFELAIDGCETVFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTS 128 (325)
T ss_pred chHHHHHHcCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEec
Confidence 345667788999999998853211 1 2235667889888888888887764334555554
No 158
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=37.04 E-value=57 Score=25.63 Aligned_cols=48 Identities=21% Similarity=0.170 Sum_probs=35.7
Q ss_pred hhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CcEEEEecCCCC
Q 023853 28 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVN 85 (276)
Q Consensus 28 ~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~~~vivvtNP~d 85 (276)
..++++|++|++..... .....-++.+.+.+.++.+ +..+++++|-.|
T Consensus 67 ~~~~~~~~~ii~fd~~~----------~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D 115 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTD----------EESFENLKKWLEEIQKYKPEDIPIIVVGNKSD 115 (162)
T ss_dssp HHHTTESEEEEEEETTB----------HHHHHTHHHHHHHHHHHSTTTSEEEEEEETTT
T ss_pred ccccccccccccccccc----------cccccccccccccccccccccccceeeecccc
Confidence 46899999999875432 2344455678888888887 578888889898
No 159
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=36.82 E-value=68 Score=26.38 Aligned_cols=48 Identities=21% Similarity=0.395 Sum_probs=31.7
Q ss_pred hcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 023853 29 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 85 (276)
Q Consensus 29 al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d 85 (276)
-+++||.+|+.-.... +.. +. .+.+...+.+++++|+..+++++|=.|
T Consensus 69 ~~~~a~~~ilvfdit~-----~~S-f~---~~~~~w~~~i~~~~~~~~iilVgnK~D 116 (178)
T cd04131 69 CYPDSDAVLICFDISR-----PET-LD---SVLKKWRGEIQEFCPNTKVLLVGCKTD 116 (178)
T ss_pred hcCCCCEEEEEEECCC-----hhh-HH---HHHHHHHHHHHHHCCCCCEEEEEEChh
Confidence 4789999988765432 211 11 112345566777888888888999999
No 160
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.74 E-value=18 Score=33.09 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=29.4
Q ss_pred cccccccccCCcccccce-ecCCCHHhhcCCCcEEEEcCCCC
Q 023853 3 IPLAQNKFDVDSRAVRGF-LGQQQLEDALTGMDIVIIPAGVP 43 (276)
Q Consensus 3 ~~~~~~~~d~~~~~~~~i-~~~~d~~~al~daDiVii~ag~~ 43 (276)
-|+|+.|..- ..-|.-. +-|.++++..+.|||||.+.|.+
T Consensus 172 ~PmA~~L~~~-g~tVtv~~~rT~~l~e~~~~ADIVIsavg~~ 212 (296)
T PRK14188 172 KPMAQLLLAA-NATVTIAHSRTRDLPAVCRRADILVAAVGRP 212 (296)
T ss_pred HHHHHHHHhC-CCEEEEECCCCCCHHHHHhcCCEEEEecCCh
Confidence 5788888763 3344434 34668999999999999988865
No 161
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.52 E-value=22 Score=32.54 Aligned_cols=40 Identities=23% Similarity=0.402 Sum_probs=27.4
Q ss_pred ccccccccCCccccccee-cCCCHHhhcCCCcEEEEcCCCCC
Q 023853 4 PLAQNKFDVDSRAVRGFL-GQQQLEDALTGMDIVIIPAGVPR 44 (276)
Q Consensus 4 ~~~~~~~d~~~~~~~~i~-~~~d~~~al~daDiVii~ag~~~ 44 (276)
||+|=|.. ...-|.-.. -|.|+++-++.|||||.+.|.|.
T Consensus 175 Pla~lL~~-~~aTVt~chs~T~~l~~~~~~ADIvVsAvGkp~ 215 (294)
T PRK14187 175 PMACLLLG-ENCTVTTVHSATRDLADYCSKADILVAAVGIPN 215 (294)
T ss_pred HHHHHHhh-CCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcC
Confidence 66666654 223333332 36789988999999999999663
No 162
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=36.37 E-value=76 Score=25.85 Aligned_cols=68 Identities=16% Similarity=0.298 Sum_probs=35.6
Q ss_pred cccccccCCcccccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 023853 5 LAQNKFDVDSRAVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 84 (276)
Q Consensus 5 ~~~~~~d~~~~~~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~ 84 (276)
..+++.|.+... .+.... ...+++||.+|+.-.... +.. +. ++. ..+.+.+.+++++.-++++.|=.
T Consensus 49 ~~l~i~Dt~G~~--~~~~~~--~~~~~~a~~~ilv~d~~~-----~~s-~~-~~~--~~w~~~i~~~~~~~piilvgnK~ 115 (175)
T cd01874 49 YTLGLFDTAGQE--DYDRLR--PLSYPQTDVFLVCFSVVS-----PSS-FE-NVK--EKWVPEITHHCPKTPFLLVGTQI 115 (175)
T ss_pred EEEEEEECCCcc--chhhhh--hhhcccCCEEEEEEECCC-----HHH-HH-HHH--HHHHHHHHHhCCCCCEEEEEECH
Confidence 345667765542 222222 225788999888765432 111 11 111 12334455566666677888887
Q ss_pred C
Q 023853 85 N 85 (276)
Q Consensus 85 d 85 (276)
|
T Consensus 116 D 116 (175)
T cd01874 116 D 116 (175)
T ss_pred h
Confidence 7
No 163
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=36.36 E-value=1.2e+02 Score=28.11 Aligned_cols=62 Identities=16% Similarity=0.112 Sum_probs=46.5
Q ss_pred eecCCCHHhhcCCCcEEEEcCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecC
Q 023853 20 FLGQQQLEDALTGMDIVIIPAGVPRKPGM-TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 82 (276)
Q Consensus 20 i~~~~d~~~al~daDiVii~ag~~~k~g~-~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtN 82 (276)
+...+.+++|+++||.|+=+|....-... ...+++.-.++-...+.+.++++. ...=+|+|.
T Consensus 66 L~d~~sf~~ai~gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TS 128 (327)
T KOG1502|consen 66 LLDEGSFDKAIDGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTS 128 (327)
T ss_pred ccccchHHHHHhCCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC-CcceEEEec
Confidence 34467889999999999999975432222 355788888999999999999887 555556654
No 164
>PRK02628 nadE NAD synthetase; Reviewed
Probab=36.30 E-value=1.1e+02 Score=31.26 Aligned_cols=74 Identities=26% Similarity=0.259 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhhCCCcEEEEecCCCCCcH-HH-HHHHHHHcCCCCCCCEEEEeec------hHHHHHHHHHHHhCCCCC
Q 023853 59 GIVKTLCEGIAKCCPKAIVNLISNPVNSTV-PI-AAEVFKKVGTYDPKRLLGVTML------DVVRANTFVAEVLGLDPR 130 (276)
Q Consensus 59 ~i~~~i~~~i~~~~p~~~vivvtNP~d~~~-~v-~t~~~~~~~~~~~~rviG~t~l------ds~R~~~~la~~l~v~~~ 130 (276)
..+..+.+.+++.+.++++|=+|.=.|+.+ .. +..++.+ -|.++.+|+|+++. .+...-..+|+.||++-.
T Consensus 347 ~~v~~l~~~~~~~~~~~vvvglSGGiDSal~l~l~~~a~~~-lg~~~~~v~~v~mp~~~ss~~s~~~a~~la~~LGi~~~ 425 (679)
T PRK02628 347 IQVSGLAQRLRATGLKKVVIGISGGLDSTHALLVAAKAMDR-LGLPRKNILAYTMPGFATTDRTKNNAVALMKALGVTAR 425 (679)
T ss_pred HHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHh-hCCCcceEEEEECCCCCCCHHHHHHHHHHHHHhCCeEE
Confidence 345566777777778899999999999752 22 2232222 36778999999643 244556778999998765
Q ss_pred Cce
Q 023853 131 EVD 133 (276)
Q Consensus 131 ~v~ 133 (276)
.+.
T Consensus 426 ~i~ 428 (679)
T PRK02628 426 EID 428 (679)
T ss_pred EEE
Confidence 554
No 165
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=36.23 E-value=77 Score=26.88 Aligned_cols=71 Identities=24% Similarity=0.313 Sum_probs=34.5
Q ss_pred CCCcEEEE-cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHcCCCCCCCEEEE
Q 023853 31 TGMDIVII-PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV 109 (276)
Q Consensus 31 ~daDiVii-~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d~~~~v~t~~~~~~~~~~~~rviG~ 109 (276)
+++|+|+| |+|... +. ....+-++++.+. ..|.-+++|++-....- -+..+..+...++...+| +
T Consensus 82 ~~~D~vlIDT~Gr~~-----~d---~~~~~el~~~~~~---~~~~~~~LVlsa~~~~~--~~~~~~~~~~~~~~~~lI-l 147 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSP-----RD---EELLEELKKLLEA---LNPDEVHLVLSATMGQE--DLEQALAFYEAFGIDGLI-L 147 (196)
T ss_dssp TTSSEEEEEE-SSSS-----TH---HHHHHHHHHHHHH---HSSSEEEEEEEGGGGGH--HHHHHHHHHHHSSTCEEE-E
T ss_pred cCCCEEEEecCCcch-----hh---HHHHHHHHHHhhh---cCCccceEEEecccChH--HHHHHHHHhhcccCceEE-E
Confidence 56999999 777542 11 1112223333333 36776666664333221 121223333335555565 6
Q ss_pred eechHH
Q 023853 110 TMLDVV 115 (276)
Q Consensus 110 t~lds~ 115 (276)
|.+|+.
T Consensus 148 TKlDet 153 (196)
T PF00448_consen 148 TKLDET 153 (196)
T ss_dssp ESTTSS
T ss_pred EeecCC
Confidence 888873
No 166
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=35.95 E-value=1.2e+02 Score=24.47 Aligned_cols=50 Identities=16% Similarity=0.282 Sum_probs=33.5
Q ss_pred CCCcEEEEcCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCC
Q 023853 31 TGMDIVIIPAGVPRK-PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 83 (276)
Q Consensus 31 ~daDiVii~ag~~~k-~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP 83 (276)
...|+|++..|.... .+....+.+. .-++.++..+++.+|++.|++++-|
T Consensus 55 ~~pd~Vii~~G~ND~~~~~~~~~~~~---~~~~~li~~i~~~~~~~~iv~~~~~ 105 (189)
T cd01825 55 LPPDLVILSYGTNEAFNKQLNASEYR---QQLREFIKRLRQILPNASILLVGPP 105 (189)
T ss_pred CCCCEEEEECCCcccccCCCCHHHHH---HHHHHHHHHHHHHCCCCeEEEEcCC
Confidence 568999999887642 2211233334 4457788888888899988888744
No 167
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=35.77 E-value=59 Score=29.78 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=19.2
Q ss_pred ceecCCCHHhhcCCCcEEEEcCC
Q 023853 19 GFLGQQQLEDALTGMDIVIIPAG 41 (276)
Q Consensus 19 ~i~~~~d~~~al~daDiVii~ag 41 (276)
++..++|+++|+++||+|..+..
T Consensus 200 ~~~~~~d~~ea~~~aDvvyt~~~ 222 (305)
T PRK00856 200 EYGVHTDLDEVIEDADVVMMLRV 222 (305)
T ss_pred ceEEECCHHHHhCCCCEEEECCc
Confidence 45789999999999998888653
No 168
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=35.57 E-value=2.5e+02 Score=27.01 Aligned_cols=83 Identities=12% Similarity=0.138 Sum_probs=47.1
Q ss_pred ceecCCCHHhhcCCCcEEEEcCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEe--cCCCCCcHHHHHHHH
Q 023853 19 GFLGQQQLEDALTGMDIVIIPAGVPRKP-GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI--SNPVNSTVPIAAEVF 95 (276)
Q Consensus 19 ~i~~~~d~~~al~daDiVii~ag~~~k~-g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivv--tNP~d~~~~v~t~~~ 95 (276)
.+.+|+|.+ .++.||++||+.-.|.+. .+..+.++... .+.+++.+ .+|=++++ |-|..++=-++--++
T Consensus 72 ~lraTtd~~-~l~~~dv~iI~VPTPl~~~~~pDls~v~~a---a~sIa~~L----~kG~LVIlEST~~PGTTe~v~~pll 143 (436)
T COG0677 72 KLRATTDPE-ELKECDVFIICVPTPLKKYREPDLSYVESA---ARSIAPVL----KKGDLVILESTTPPGTTEEVVKPLL 143 (436)
T ss_pred CceEecChh-hcccCCEEEEEecCCcCCCCCCChHHHHHH---HHHHHHhc----CCCCEEEEecCCCCCcHHHHHHHHH
Confidence 466899997 689999999987666533 33444444422 23444444 35533333 667665444444444
Q ss_pred HHcCCCCCCCEEEE
Q 023853 96 KKVGTYDPKRLLGV 109 (276)
Q Consensus 96 ~~~~~~~~~rviG~ 109 (276)
...+|+-...=|++
T Consensus 144 e~~sgL~~~~Df~l 157 (436)
T COG0677 144 EERSGLKFGEDFYL 157 (436)
T ss_pred hhcCCCcccceeeE
Confidence 55566655433333
No 169
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.42 E-value=23 Score=32.26 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=27.1
Q ss_pred ccccccccCCccccccee-cCCCHHhhcCCCcEEEEcCCCCC
Q 023853 4 PLAQNKFDVDSRAVRGFL-GQQQLEDALTGMDIVIIPAGVPR 44 (276)
Q Consensus 4 ~~~~~~~d~~~~~~~~i~-~~~d~~~al~daDiVii~ag~~~ 44 (276)
||++=|..- ..-|.-.. -|.|+++.++.|||||.+.|.|.
T Consensus 174 Pla~lL~~~-~atVtv~hs~T~~l~~~~~~ADIvi~avG~p~ 214 (285)
T PRK10792 174 PMSLELLLA-GCTVTVCHRFTKNLRHHVRNADLLVVAVGKPG 214 (285)
T ss_pred HHHHHHHHC-CCeEEEEECCCCCHHHHHhhCCEEEEcCCCcc
Confidence 666655432 23333222 36789999999999999999764
No 170
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.09 E-value=20 Score=32.61 Aligned_cols=40 Identities=23% Similarity=0.405 Sum_probs=27.3
Q ss_pred ccccccccCCcccccce-ecCCCHHhhcCCCcEEEEcCCCCC
Q 023853 4 PLAQNKFDVDSRAVRGF-LGQQQLEDALTGMDIVIIPAGVPR 44 (276)
Q Consensus 4 ~~~~~~~d~~~~~~~~i-~~~~d~~~al~daDiVii~ag~~~ 44 (276)
||+|=|.. ...-|.-. +.|.|+++.++.|||||.+.|.|.
T Consensus 173 Pla~lL~~-~~atVt~chs~t~~l~~~~~~ADIvI~AvG~p~ 213 (284)
T PRK14190 173 PVGQLLLN-ENATVTYCHSKTKNLAELTKQADILIVAVGKPK 213 (284)
T ss_pred HHHHHHHH-CCCEEEEEeCCchhHHHHHHhCCEEEEecCCCC
Confidence 66666643 22333333 346789999999999999998663
No 171
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=34.75 E-value=1.7e+02 Score=27.97 Aligned_cols=70 Identities=13% Similarity=0.135 Sum_probs=37.0
Q ss_pred CCCcEEEE-cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHcCCCCCCCEEEE
Q 023853 31 TGMDIVII-PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV 109 (276)
Q Consensus 31 ~daDiVii-~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d~~~~v~t~~~~~~~~~~~~rviG~ 109 (276)
.++|+|+| |+|... .+...+.++........|+-.++|++ |.. ...-+..+++++..++...+| +
T Consensus 284 ~~~D~VLIDTAGr~~-----------~d~~~l~EL~~l~~~~~p~~~~LVLs-ag~-~~~d~~~i~~~f~~l~i~glI-~ 349 (407)
T PRK12726 284 NCVDHILIDTVGRNY-----------LAEESVSEISAYTDVVHPDLTCFTFS-SGM-KSADVMTILPKLAEIPIDGFI-I 349 (407)
T ss_pred CCCCEEEEECCCCCc-----------cCHHHHHHHHHHhhccCCceEEEECC-Ccc-cHHHHHHHHHhcCcCCCCEEE-E
Confidence 46899999 777543 11222333333333345665555553 311 111233455666667766665 5
Q ss_pred eechH
Q 023853 110 TMLDV 114 (276)
Q Consensus 110 t~lds 114 (276)
|-+|.
T Consensus 350 TKLDE 354 (407)
T PRK12726 350 TKMDE 354 (407)
T ss_pred EcccC
Confidence 77777
No 172
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=34.56 E-value=1.1e+02 Score=28.54 Aligned_cols=113 Identities=15% Similarity=0.068 Sum_probs=58.5
Q ss_pred HHhhcCCCcEEEEcCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCCC----cHH---HHHHHH
Q 023853 26 LEDALTGMDIVIIPAGVPRKPG---MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS----TVP---IAAEVF 95 (276)
Q Consensus 26 ~~~al~daDiVii~ag~~~k~g---~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d~----~~~---v~t~~~ 95 (276)
+..+++++|+||-+++.....+ ......+..|......+.+.+++.+.+-+ |.+|...-. ... -+++
T Consensus 79 ~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~-V~~SS~~vYg~~~~~~~~~~~~E-- 155 (370)
T PLN02695 79 CLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRF-FYASSACIYPEFKQLETNVSLKE-- 155 (370)
T ss_pred HHHHHhCCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEE-EEeCchhhcCCccccCcCCCcCc--
Confidence 4456789999999886432111 12344567899999999999888765544 444321100 000 0000
Q ss_pred HHcCCCCCCCEEEEeechHHHHHHHHHHHhCCCCCCce-eeEEeecC
Q 023853 96 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA 141 (276)
Q Consensus 96 ~~~~~~~~~rviG~t~lds~R~~~~la~~l~v~~~~v~-~~ViG~hg 141 (276)
.....+++....|.+.....++-...++..+++..-++ ..+.|.++
T Consensus 156 ~~~~p~~p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~ 202 (370)
T PLN02695 156 SDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRIGRFHNIYGPFG 202 (370)
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCccCCCC
Confidence 00001223333333333333333334566787776666 66778653
No 173
>PTZ00323 NAD+ synthase; Provisional
Probab=34.40 E-value=1.6e+02 Score=26.89 Aligned_cols=83 Identities=13% Similarity=0.142 Sum_probs=47.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHcCC---CCCCCEEEEeec-----hHHH
Q 023853 45 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT---YDPKRLLGVTML-----DVVR 116 (276)
Q Consensus 45 k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d~~~~v~t~~~~~~~~---~~~~rviG~t~l-----ds~R 116 (276)
++..+-.+++..-.. .+-+.+++.+.+++++-+|.=+|+. +++.++.++.| .|..+++|++.- ++..
T Consensus 21 ~~~~~~~~~i~~~~~---~L~~~l~~~g~~~vVVglSGGVDSa--v~aaLa~~alg~~~~~~~~~~~v~~P~~ss~~~~~ 95 (294)
T PTZ00323 21 KRAFNPAAWIEKKCA---KLNEYMRRCGLKGCVTSVSGGIDSA--VVLALCARAMRMPNSPIQKNVGLCQPIHSSAWALN 95 (294)
T ss_pred CCCCCHHHHHHHHHH---HHHHHHHHcCCCcEEEECCCCHHHH--HHHHHHHHHhccccCCceEEEEEECCCCCCHHHHH
Confidence 444455555554333 3334445566788999999999963 23333445544 244678888422 2333
Q ss_pred HHHHHHHHhCCCCCCc
Q 023853 117 ANTFVAEVLGLDPREV 132 (276)
Q Consensus 117 ~~~~la~~l~v~~~~v 132 (276)
--..+++.+|++...|
T Consensus 96 ~A~~la~~lGi~~~~i 111 (294)
T PTZ00323 96 RGRENIQACGATEVTV 111 (294)
T ss_pred HHHHHHHHhCCcEEEE
Confidence 3456788999765433
No 174
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=34.18 E-value=57 Score=29.56 Aligned_cols=69 Identities=20% Similarity=0.267 Sum_probs=46.1
Q ss_pred cCCCHHhhcC--CCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCC--CcHHHHHHHHHH
Q 023853 22 GQQQLEDALT--GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN--STVPIAAEVFKK 97 (276)
Q Consensus 22 ~~~d~~~al~--daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d--~~~~v~t~~~~~ 97 (276)
...++.++++ ++|++|=+.+.+ | . +=+++.+.|.+++++.+|.-.|||.. ..++ +-+++
T Consensus 93 ~~~~L~e~i~~v~ptvlIG~S~~~---g-----~------ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~p---e~a~~ 155 (279)
T cd05312 93 EGKSLLEVVKAVKPTVLIGLSGVG---G-----A------FTEEVVRAMAKSNERPIIFALSNPTSKAECTA---EDAYK 155 (279)
T ss_pred cCCCHHHHHHhcCCCEEEEeCCCC---C-----C------CCHHHHHHHHhcCCCCEEEECCCcCCccccCH---HHHHH
Confidence 3468999999 999988765433 2 1 11567778888899999999999985 3222 33333
Q ss_pred cCCCCCCCEEEE
Q 023853 98 VGTYDPKRLLGV 109 (276)
Q Consensus 98 ~~~~~~~rviG~ 109 (276)
.+. -+.++++
T Consensus 156 ~t~--G~ai~AT 165 (279)
T cd05312 156 WTD--GRALFAS 165 (279)
T ss_pred hhc--CCEEEEe
Confidence 321 2457887
No 175
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.84 E-value=22 Score=32.28 Aligned_cols=40 Identities=25% Similarity=0.352 Sum_probs=26.8
Q ss_pred ccccccccCCcccccce-ecCCCHHhhcCCCcEEEEcCCCCC
Q 023853 4 PLAQNKFDVDSRAVRGF-LGQQQLEDALTGMDIVIIPAGVPR 44 (276)
Q Consensus 4 ~~~~~~~d~~~~~~~~i-~~~~d~~~al~daDiVii~ag~~~ 44 (276)
||++=|..- ..-|.-. +-|.|+++-++.|||||.+.|.|.
T Consensus 172 Pla~lL~~~-~AtVti~hs~T~~l~~~~~~ADIvV~AvGkp~ 212 (281)
T PRK14183 172 PMAALLLNA-NATVDICHIFTKDLKAHTKKADIVIVGVGKPN 212 (281)
T ss_pred HHHHHHHHC-CCEEEEeCCCCcCHHHHHhhCCEEEEecCccc
Confidence 666666542 2223211 246789988999999999999663
No 176
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=33.39 E-value=43 Score=29.93 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=29.4
Q ss_pred cccccccCCcccccceecCCCH-------HhhcCCCcEEEEcCCCCC-CCCCCHH
Q 023853 5 LAQNKFDVDSRAVRGFLGQQQL-------EDALTGMDIVIIPAGVPR-KPGMTRD 51 (276)
Q Consensus 5 ~~~~~~d~~~~~~~~i~~~~d~-------~~al~daDiVii~ag~~~-k~g~~r~ 51 (276)
|+.+|...+.++-+...+-+|. ..+++.+|+||+|+|... ..+.++.
T Consensus 26 la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLGPT~DDiT~e 80 (255)
T COG1058 26 LADELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGGLGPTHDDLTAE 80 (255)
T ss_pred HHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCcCCCccHhHHH
Confidence 4556666666665555444443 456778999999999743 3334443
No 177
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=33.29 E-value=69 Score=28.21 Aligned_cols=63 Identities=25% Similarity=0.306 Sum_probs=41.2
Q ss_pred HHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHcCCCCCCCEEEEee------chHHHHHHHHHHHhCCCC
Q 023853 63 TLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTM------LDVVRANTFVAEVLGLDP 129 (276)
Q Consensus 63 ~i~~~i~~~~p~~~vivvtNP~d~~~~v~t~~~~~~~~~~~~rviG~t~------lds~R~~~~la~~l~v~~ 129 (276)
-+-+.+++.+.+++|+-+|-=+|+. +++.++.++. .+++|+|+.+ -.+..-...+|+.||++.
T Consensus 8 ~L~~~~~~~g~~~vVvglSGGiDSa--v~A~La~~Al--g~~~v~~v~mp~~~~~~~~~~~A~~la~~lgi~~ 76 (242)
T PF02540_consen 8 FLRDYVKKSGAKGVVVGLSGGIDSA--VVAALAVKAL--GPDNVLAVIMPSGFSSEEDIEDAKELAEKLGIEY 76 (242)
T ss_dssp HHHHHHHHHTTSEEEEEETSSHHHH--HHHHHHHHHH--GGGEEEEEEEESSTSTHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHhCCCeEEEEcCCCCCHH--HHHHHHHHHh--hhccccccccccccCChHHHHHHHHHHHHhCCCe
Confidence 3444555667889999999889953 4555566764 3679999842 112233466888888653
No 178
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=33.26 E-value=1.2e+02 Score=24.46 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=28.8
Q ss_pred CCCcEEEEcCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCC
Q 023853 31 TGMDIVIIPAGVPRKPG-MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 83 (276)
Q Consensus 31 ~daDiVii~ag~~~k~g-~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP 83 (276)
.+.|+||+..|...... ....+.+..+ ++.+.+.++ .|++.++++|.|
T Consensus 66 ~~~d~vii~~G~ND~~~~~~~~~~~~~~---~~~~i~~i~--~~~~~vil~~~~ 114 (185)
T cd01832 66 LRPDLVTLLAGGNDILRPGTDPDTYRAD---LEEAVRRLR--AAGARVVVFTIP 114 (185)
T ss_pred cCCCEEEEeccccccccCCCCHHHHHHH---HHHHHHHHH--hCCCEEEEecCC
Confidence 58899999888653221 3333344444 345666665 467777777644
No 179
>PF04432 FrhB_FdhB_C: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus; InterPro: IPR007525 Coenzyme F420 hydrogenase (1.12.99.1 from EC) reduces the low-potential two-electron acceptor coenzyme F420. This family contains the C-termini of F420 hydrogenase and dehydrogenase beta subunits [, ]. The C terminus of Methanobacterium formicicum formate dehydrogenase beta chain (1.2.1.2 from EC, P06130 from SWISSPROT) is also represented in this entry []. This region is often found in association with the 4Fe-4S binding domain, fer4 (IPR001450 from INTERPRO), and the N terminus IPR007516 from INTERPRO.
Probab=33.20 E-value=1.6e+02 Score=23.83 Aligned_cols=61 Identities=21% Similarity=0.359 Sum_probs=39.3
Q ss_pred CcEEEEecCCCCCcHHHHHH-HHHHcCCCCCC----CEEEE-e--echHHHHHHHHHHHhCCCCCCceeeEEee
Q 023853 74 KAIVNLISNPVNSTVPIAAE-VFKKVGTYDPK----RLLGV-T--MLDVVRANTFVAEVLGLDPREVDVPVVGG 139 (276)
Q Consensus 74 ~~~vivvtNP~d~~~~v~t~-~~~~~~~~~~~----rviG~-t--~lds~R~~~~la~~l~v~~~~v~~~ViG~ 139 (276)
.-.|++++-|++ +-+- .+++. ..... -+||+ | ..+...++..|.+++++++.+|.-+-+-+
T Consensus 4 ~~kV~~vG~PCq----i~al~~~~~~-~~~~~~~~~~~igl~C~g~~s~~~~~~~l~~~~~~~~~~v~~~~~r~ 72 (161)
T PF04432_consen 4 GKKVAFVGTPCQ----IAALRKLLKR-NYENRDEIVYTIGLFCHGVPSPKKLRKYLEEQLGIKPDDVKKFDFRD 72 (161)
T ss_pred CCEEEEEeccHH----HHHHHHHHhh-CcccCcceEEEEeEECCCCCCHHHHHHHHHHHhCCChhheeEEEEeC
Confidence 346888888999 4431 11221 12222 45888 7 56677778999999999999886544443
No 180
>PRK09458 pspB phage shock protein B; Provisional
Probab=33.02 E-value=99 Score=22.27 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=22.2
Q ss_pred CCCHHHHHHHH---HHHHHHHHHHHHHhhhhh
Q 023853 247 PLNEYERAGLE---KAKKELAGSIQKGVSFVR 275 (276)
Q Consensus 247 ~L~~~E~~~l~---~sa~~i~~~~~~~~~~~~ 275 (276)
.||++|+++|+ +.|+.+++.++...++++
T Consensus 35 ~Ls~~d~~~L~~L~~~A~rm~~RI~tLE~ILD 66 (75)
T PRK09458 35 GLSQEEQQRLAQLTEKAERMRERIQALEAILD 66 (75)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 58988866666 788888888887776664
No 181
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.87 E-value=32 Score=31.30 Aligned_cols=40 Identities=20% Similarity=0.366 Sum_probs=26.7
Q ss_pred ccccccccCCcccccce-ecCCCHHhhcCCCcEEEEcCCCCC
Q 023853 4 PLAQNKFDVDSRAVRGF-LGQQQLEDALTGMDIVIIPAGVPR 44 (276)
Q Consensus 4 ~~~~~~~d~~~~~~~~i-~~~~d~~~al~daDiVii~ag~~~ 44 (276)
||+|=|.. ...-|.-. +.|.|+++.++.|||||.+.|.|.
T Consensus 172 Pla~lL~~-~~atVtichs~T~~l~~~~~~ADIvI~AvG~~~ 212 (284)
T PRK14170 172 PVAQLLLN-ENATVTIAHSRTKDLPQVAKEADILVVATGLAK 212 (284)
T ss_pred HHHHHHHH-CCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcC
Confidence 66666543 22333322 336689989999999999999663
No 182
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=32.76 E-value=1.7e+02 Score=25.66 Aligned_cols=68 Identities=19% Similarity=0.245 Sum_probs=39.2
Q ss_pred ceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHc
Q 023853 19 GFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV 98 (276)
Q Consensus 19 ~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d~~~~v~t~~~~~~ 98 (276)
.+..++|+++ +.+.|+||++.-..+ ...+++.+.+.+ .+++.|+.+.|-.+. .-. +.+.
T Consensus 47 ~~~~~~~~~~-~~~~D~iiv~vKs~~------------~~~~l~~l~~~l---~~~~~iv~~qNG~g~----~~~-l~~~ 105 (293)
T TIGR00745 47 PVSAATSPEE-LPPADLVIITVKAYQ------------TEEAAALLLPLI---GKNTKVLFLQNGLGH----EER-LREL 105 (293)
T ss_pred ccccccChhh-cCCCCEEEEeccchh------------HHHHHHHhHhhc---CCCCEEEEccCCCCC----HHH-HHHH
Confidence 3455667764 889999999864321 112233333322 477888889998873 222 2332
Q ss_pred CCCCCCCEEEE
Q 023853 99 GTYDPKRLLGV 109 (276)
Q Consensus 99 ~~~~~~rviG~ 109 (276)
+|+.+|++-
T Consensus 106 --~~~~~v~~g 114 (293)
T TIGR00745 106 --LPARRILGG 114 (293)
T ss_pred --hCccCEEEE
Confidence 455666643
No 183
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=32.51 E-value=76 Score=23.91 Aligned_cols=36 Identities=19% Similarity=0.144 Sum_probs=28.8
Q ss_pred CccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHH
Q 023853 224 ELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAK 260 (276)
Q Consensus 224 ~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa 260 (276)
.+.|+++|-+=..+|..+-+-- |++.+-++.|+.+.
T Consensus 41 ~GlFVaMPs~k~~~g~y~DI~~-Pit~e~Re~i~~aV 76 (94)
T PRK13259 41 NGLFIAMPSKRTPDGEFRDIAH-PINSDTREKIQDAI 76 (94)
T ss_pred CCeEEECcCcCCCCCcEEEEEc-cCCHHHHHHHHHHH
Confidence 4789999998878887664454 79999999998765
No 184
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=32.43 E-value=4.2e+02 Score=24.76 Aligned_cols=21 Identities=10% Similarity=-0.029 Sum_probs=14.1
Q ss_pred eecCCCHHhhcCCCcEEEEcC
Q 023853 20 FLGQQQLEDALTGMDIVIIPA 40 (276)
Q Consensus 20 i~~~~d~~~al~daDiVii~a 40 (276)
.....+..++.++||+||+.-
T Consensus 69 A~~AaS~aEAAa~ADVVIL~L 89 (341)
T TIGR01724 69 VKVVSDDKEAAKHGEIHVLFT 89 (341)
T ss_pred CeecCCHHHHHhCCCEEEEec
Confidence 345556777777888777753
No 185
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=32.26 E-value=1.7e+02 Score=26.13 Aligned_cols=58 Identities=17% Similarity=0.055 Sum_probs=37.4
Q ss_pred CCHHhhcCCCcEEEEcCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEec
Q 023853 24 QQLEDALTGMDIVIIPAGVPRK-PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 81 (276)
Q Consensus 24 ~d~~~al~daDiVii~ag~~~k-~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvt 81 (276)
.+++++++++|+||-+|+.... ......+++..|+.....+.+.+++...-..+|.+|
T Consensus 69 ~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~S 127 (322)
T PLN02986 69 SSFEQAIEGCDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTS 127 (322)
T ss_pred chHHHHHhCCCEEEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEec
Confidence 4567788999999999875321 112234567788888888888877652112455544
No 186
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=31.99 E-value=1.5e+02 Score=22.86 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=21.1
Q ss_pred HHHHHHhCCCCCCceeeEEeecCC
Q 023853 119 TFVAEVLGLDPREVDVPVVGGHAG 142 (276)
Q Consensus 119 ~~la~~l~v~~~~v~~~ViG~hgg 142 (276)
..|.+++++++..-.++.+|-+|+
T Consensus 67 ~~lr~~l~~~~~~f~~vLiGKDG~ 90 (118)
T PF13778_consen 67 QALRKRLRIPPGGFTVVLIGKDGG 90 (118)
T ss_pred HHHHHHhCCCCCceEEEEEeCCCc
Confidence 467888999999999999999976
No 187
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.86 E-value=33 Score=31.20 Aligned_cols=41 Identities=29% Similarity=0.402 Sum_probs=27.4
Q ss_pred ccccccccCC---ccccccee-cCCCHHhhcCCCcEEEEcCCCCC
Q 023853 4 PLAQNKFDVD---SRAVRGFL-GQQQLEDALTGMDIVIIPAGVPR 44 (276)
Q Consensus 4 ~~~~~~~d~~---~~~~~~i~-~~~d~~~al~daDiVii~ag~~~ 44 (276)
||+|=|..=. ..-|.-.. -|.|+++.++.|||||.+.|.|.
T Consensus 168 Pla~lL~~~~~~~~AtVtvchs~T~~l~~~~~~ADIvV~AvG~p~ 212 (287)
T PRK14181 168 PLAALLMQKHPDTNATVTLLHSQSENLTEILKTADIIIAAIGVPL 212 (287)
T ss_pred HHHHHHHhCcCCCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcC
Confidence 6666664310 12333232 46799999999999999999663
No 188
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=31.66 E-value=2.1e+02 Score=27.70 Aligned_cols=66 Identities=18% Similarity=0.264 Sum_probs=40.7
Q ss_pred CCcEEEE-cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEec---CCCCCcHHHHHHHHHHcCCCCCCCEE
Q 023853 32 GMDIVII-PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS---NPVNSTVPIAAEVFKKVGTYDPKRLL 107 (276)
Q Consensus 32 daDiVii-~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvt---NP~d~~~~v~t~~~~~~~~~~~~rvi 107 (276)
+.|+|+| |+|... ++...+.++...+....|+.+++|++ .+.| +...+..+..++...+|
T Consensus 320 ~~DvVLIDTaGRs~-----------kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d-----~~~i~~~F~~~~idglI 383 (436)
T PRK11889 320 RVDYILIDTAGKNY-----------RASETVEEMIETMGQVEPDYICLTLSASMKSKD-----MIEIITNFKDIHIDGIV 383 (436)
T ss_pred CCCEEEEeCccccC-----------cCHHHHHHHHHHHhhcCCCeEEEEECCccChHH-----HHHHHHHhcCCCCCEEE
Confidence 5799999 676543 34455666677777777888777764 2233 34455665555555553
Q ss_pred EEeechH
Q 023853 108 GVTMLDV 114 (276)
Q Consensus 108 G~t~lds 114 (276)
+|-||.
T Consensus 384 -~TKLDE 389 (436)
T PRK11889 384 -FTKFDE 389 (436)
T ss_pred -EEcccC
Confidence 366776
No 189
>PRK07680 late competence protein ComER; Validated
Probab=31.62 E-value=1.2e+02 Score=26.75 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=30.5
Q ss_pred eecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCcEEEEecCCCC
Q 023853 20 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVN 85 (276)
Q Consensus 20 i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~~~vivvtNP~d 85 (276)
+..+.+.++.+++||+||++.- | ..+.++.+.+..+ .++.+++.++|++.
T Consensus 50 ~~~~~~~~~~~~~aDiVilav~-p---------------~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 50 IHVAKTIEEVISQSDLIFICVK-P---------------LDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred eEEECCHHHHHHhCCEEEEecC-H---------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 4456677777889999988762 1 1122333334333 35668888888775
No 190
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=31.60 E-value=1.3e+02 Score=25.75 Aligned_cols=17 Identities=12% Similarity=0.417 Sum_probs=8.6
Q ss_pred CCCHHhhcCCCcEEEEc
Q 023853 23 QQQLEDALTGMDIVIIP 39 (276)
Q Consensus 23 ~~d~~~al~daDiVii~ 39 (276)
+.|+++.++++|+|+++
T Consensus 57 ~~~~~~~~~~~DiViia 73 (245)
T PRK07634 57 TTDWKQHVTSVDTIVLA 73 (245)
T ss_pred eCChHHHHhcCCEEEEe
Confidence 34444455555555554
No 191
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=31.59 E-value=30 Score=29.67 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=16.3
Q ss_pred HHhhcCCCcEEEEcCCCCC
Q 023853 26 LEDALTGMDIVIIPAGVPR 44 (276)
Q Consensus 26 ~~~al~daDiVii~ag~~~ 44 (276)
+.+.++.|||||.+.|.|.
T Consensus 120 l~~~~~~ADIVIsAvG~~~ 138 (197)
T cd01079 120 TLDCLSQSDVVITGVPSPN 138 (197)
T ss_pred HHHHhhhCCEEEEccCCCC
Confidence 6778999999999999663
No 192
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.43 E-value=24 Score=32.23 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=26.3
Q ss_pred ccccccccC---Ccccccce-ecCCCHHhhcCCCcEEEEcCCCC
Q 023853 4 PLAQNKFDV---DSRAVRGF-LGQQQLEDALTGMDIVIIPAGVP 43 (276)
Q Consensus 4 ~~~~~~~d~---~~~~~~~i-~~~~d~~~al~daDiVii~ag~~ 43 (276)
||+|-|... ...-|... +-|.|+++.++.||+||.+.|.|
T Consensus 174 Pla~lL~~~~~~~~atVt~~hs~t~~l~~~~~~ADIvI~Avg~~ 217 (295)
T PRK14174 174 PMANLMLQKLKESNCTVTICHSATKDIPSYTRQADILIAAIGKA 217 (295)
T ss_pred HHHHHHHhccccCCCEEEEEeCCchhHHHHHHhCCEEEEecCcc
Confidence 777666431 12222222 23568999999999999998865
No 193
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=31.18 E-value=1.3e+02 Score=27.20 Aligned_cols=46 Identities=15% Similarity=0.261 Sum_probs=30.1
Q ss_pred CCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh--CCCcEEEEecCCC
Q 023853 23 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC--CPKAIVNLISNPV 84 (276)
Q Consensus 23 ~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~--~p~~~vivvtNP~ 84 (276)
..++++++++||+||++.- ...++++++.+..+ .++.+++..|+..
T Consensus 38 ~~~~~~~~~~advvi~~vp----------------~~~~~~v~~~l~~~~~~~~~ivi~~s~gi 85 (308)
T PRK14619 38 GLSLAAVLADADVIVSAVS----------------MKGVRPVAEQVQALNLPPETIIVTATKGL 85 (308)
T ss_pred CCCHHHHHhcCCEEEEECC----------------hHHHHHHHHHHHHhcCCCCcEEEEeCCcc
Confidence 3578889999999999752 12344455556543 4566777777633
No 194
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=31.17 E-value=47 Score=29.73 Aligned_cols=48 Identities=25% Similarity=0.394 Sum_probs=37.6
Q ss_pred CCHHhhcCCC--cEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 023853 24 QQLEDALTGM--DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 85 (276)
Q Consensus 24 ~d~~~al~da--DiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d 85 (276)
.++.++++++ |++|=+.|.+ | .+=+++.+.|.+++++.+|.=.|||..
T Consensus 96 ~~L~eav~~~kPtvLIG~S~~~---g-----------~ft~evv~~Ma~~~erPIIF~LSNPt~ 145 (255)
T PF03949_consen 96 GSLLEAVKGAKPTVLIGLSGQG---G-----------AFTEEVVRAMAKHNERPIIFPLSNPTP 145 (255)
T ss_dssp SSHHHHHHCH--SEEEECSSST---T-----------SS-HHHHHHCHHHSSSEEEEE-SSSCG
T ss_pred cCHHHHHHhcCCCEEEEecCCC---C-----------cCCHHHHHHHhccCCCCEEEECCCCCC
Confidence 5899999999 9988876643 2 122567888889999999999999987
No 195
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=30.87 E-value=2.2e+02 Score=25.71 Aligned_cols=112 Identities=14% Similarity=-0.005 Sum_probs=60.0
Q ss_pred CHHhhcCC--CcEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhC-------CC-cEEEEecCCCCCc-----
Q 023853 25 QLEDALTG--MDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCC-------PK-AIVNLISNPVNST----- 87 (276)
Q Consensus 25 d~~~al~d--aDiVii~ag~~~k~--g~~r~~~~~~N~~i~~~i~~~i~~~~-------p~-~~vivvtNP~d~~----- 87 (276)
++++++++ .|+||-.+|..... .....+....|..-...+.+.+.++. +. ..++.+|-..-.-
T Consensus 65 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~ 144 (355)
T PRK10217 65 ELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHST 144 (355)
T ss_pred HHHHHHhhcCCCEEEECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCC
Confidence 44555664 89999998864321 12346677889888888888887641 12 2444444311000
Q ss_pred HHHHHHHHHHcCCCCCCCEEEEeechHHHHHHHHHHHhCCCCCCce-eeEEeec
Q 023853 88 VPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH 140 (276)
Q Consensus 88 ~~v~t~~~~~~~~~~~~rviG~t~lds~R~~~~la~~l~v~~~~v~-~~ViG~h 140 (276)
-..++ ....+.+....|.+-+...++-...++..+++..-++ ..|+|.+
T Consensus 145 ~~~~~----E~~~~~p~s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~ 194 (355)
T PRK10217 145 DDFFT----ETTPYAPSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPY 194 (355)
T ss_pred CCCcC----CCCCCCCCChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCC
Confidence 00011 1111222233344334444555556777777766666 6677755
No 196
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=30.84 E-value=1.3e+02 Score=27.30 Aligned_cols=56 Identities=20% Similarity=0.216 Sum_probs=40.8
Q ss_pred CHHhhcCCCcEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEec
Q 023853 25 QLEDALTGMDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 81 (276)
Q Consensus 25 d~~~al~daDiVii~ag~~~k~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvt 81 (276)
++++++++.|+||-.+|....+ ..+..+.+..|+.-...+.+.+.+.+. +.+|.+|
T Consensus 67 ~l~~~~~~iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~-~~iV~~S 124 (324)
T TIGR03589 67 RLTRALRGVDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGV-KRVVALS 124 (324)
T ss_pred HHHHHHhcCCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEEe
Confidence 5666788999999998864322 235567889999999999999887653 3455554
No 197
>PLN02583 cinnamoyl-CoA reductase
Probab=30.82 E-value=1.8e+02 Score=25.90 Aligned_cols=58 Identities=16% Similarity=0.143 Sum_probs=37.6
Q ss_pred CCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEec
Q 023853 24 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 81 (276)
Q Consensus 24 ~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvt 81 (276)
.++.++++++|.|+-.++.+........+.+..|+.-...+.+.+.+...-..+|++|
T Consensus 70 ~~~~~~l~~~d~v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~S 127 (297)
T PLN02583 70 HSILDALKGCSGLFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTS 127 (297)
T ss_pred HHHHHHHcCCCEEEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Confidence 3566789999998865543321111245678889998899999887763223455544
No 198
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.68 E-value=37 Score=31.10 Aligned_cols=41 Identities=27% Similarity=0.348 Sum_probs=27.1
Q ss_pred ccccccccC---Ccccccce-ecCCCHHhhcCCCcEEEEcCCCCC
Q 023853 4 PLAQNKFDV---DSRAVRGF-LGQQQLEDALTGMDIVIIPAGVPR 44 (276)
Q Consensus 4 ~~~~~~~d~---~~~~~~~i-~~~~d~~~al~daDiVii~ag~~~ 44 (276)
||+|=|..- ...-|.-. +.|.|+++-++.|||||.+.|.|.
T Consensus 172 Pla~lL~~~~~~~~aTVtvchs~T~~l~~~~~~ADIvIsAvGkp~ 216 (297)
T PRK14167 172 PMANLLIQKADGGNATVTVCHSRTDDLAAKTRRADIVVAAAGVPE 216 (297)
T ss_pred HHHHHHhcCccCCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcC
Confidence 666666421 12233322 346789889999999999999663
No 199
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=30.63 E-value=1.3e+02 Score=25.01 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=31.5
Q ss_pred CCCcEEEEcCCCCCCC-C-CCHHHHHHHHHHHHHHHHHHHHhhC-----CCcEEEEecCC
Q 023853 31 TGMDIVIIPAGVPRKP-G-MTRDDLFNINAGIVKTLCEGIAKCC-----PKAIVNLISNP 83 (276)
Q Consensus 31 ~daDiVii~ag~~~k~-g-~~r~~~~~~N~~i~~~i~~~i~~~~-----p~~~vivvtNP 83 (276)
...|+||+..|...-. + ....+.+..| ++++...+++.+ |+..+++++-|
T Consensus 78 ~~pd~vii~lGtND~~~~~~~~~~~~~~~---l~~lv~~i~~~~~~~~~~~~~iil~~pp 134 (208)
T cd01839 78 SPLDLVIIMLGTNDLKSYFNLSAAEIAQG---LGALVDIIRTAPIEPGMPAPKILIVAPP 134 (208)
T ss_pred CCCCEEEEeccccccccccCCCHHHHHHH---HHHHHHHHHhccccccCCCCCEEEEeCC
Confidence 4789999988875421 1 1123445555 456777777766 77877777654
No 200
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=30.26 E-value=1.6e+02 Score=30.62 Aligned_cols=72 Identities=18% Similarity=0.213 Sum_probs=36.9
Q ss_pred hcCCCcEEEE-cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHcC---CCCCC
Q 023853 29 ALTGMDIVII-PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG---TYDPK 104 (276)
Q Consensus 29 al~daDiVii-~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d~~~~v~t~~~~~~~---~~~~~ 104 (276)
.+++.|+|+| |+|...+ |...++++........|.-+++|++--.. .-.+..+++.+. +.+..
T Consensus 260 ~~~~~D~VLIDTAGRs~~-----------d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~~i~ 326 (767)
T PRK14723 260 ALGDKHLVLIDTVGMSQR-----------DRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGEDVD 326 (767)
T ss_pred HhcCCCEEEEeCCCCCcc-----------CHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccCCCC
Confidence 5788999999 7775531 12233333333334456666777642111 113444444433 33555
Q ss_pred CEEEEeechH
Q 023853 105 RLLGVTMLDV 114 (276)
Q Consensus 105 rviG~t~lds 114 (276)
.+| +|-||+
T Consensus 327 glI-lTKLDE 335 (767)
T PRK14723 327 GCI-ITKLDE 335 (767)
T ss_pred EEE-EeccCC
Confidence 555 477887
No 201
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.84 E-value=38 Score=30.75 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=27.1
Q ss_pred ccccccccCCcccccce-ecCCCHHhhcCCCcEEEEcCCCCC
Q 023853 4 PLAQNKFDVDSRAVRGF-LGQQQLEDALTGMDIVIIPAGVPR 44 (276)
Q Consensus 4 ~~~~~~~d~~~~~~~~i-~~~~d~~~al~daDiVii~ag~~~ 44 (276)
||++=|.. ...-|.-. +.|.|+++-++.|||||.+.|.|.
T Consensus 172 Pla~lL~~-~~atVt~chs~T~nl~~~~~~ADIvIsAvGkp~ 212 (282)
T PRK14166 172 PMATMLLN-AGATVSVCHIKTKDLSLYTRQADLIIVAAGCVN 212 (282)
T ss_pred HHHHHHHH-CCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcC
Confidence 66666653 22333322 236789989999999999999663
No 202
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.73 E-value=39 Score=30.67 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=25.8
Q ss_pred ccccccccCCccccccee-cCCCHHhhcCCCcEEEEcCCCC
Q 023853 4 PLAQNKFDVDSRAVRGFL-GQQQLEDALTGMDIVIIPAGVP 43 (276)
Q Consensus 4 ~~~~~~~d~~~~~~~~i~-~~~d~~~al~daDiVii~ag~~ 43 (276)
||++=|.. ...-|.-.. -|.|+++-++.|||||.+.|.|
T Consensus 172 Pla~lL~~-~~AtVtichs~T~nl~~~~~~ADIvI~AvGk~ 211 (282)
T PRK14182 172 PMAMMLLE-RHATVTIAHSRTADLAGEVGRADILVAAIGKA 211 (282)
T ss_pred HHHHHHHH-CCCEEEEeCCCCCCHHHHHhhCCEEEEecCCc
Confidence 66665542 122333222 2668999999999999999965
No 203
>PLN03080 Probable beta-xylosidase; Provisional
Probab=29.51 E-value=55 Score=34.09 Aligned_cols=56 Identities=21% Similarity=0.275 Sum_probs=33.5
Q ss_pred hhcCCCcEEEEcCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHhhCCC-cEEEEe-cCCCC
Q 023853 28 DALTGMDIVIIPAGVPR---KPGMTRDDLFNINAGIVKTLCEGIAKCCPK-AIVNLI-SNPVN 85 (276)
Q Consensus 28 ~al~daDiVii~ag~~~---k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~-~~vivv-tNP~d 85 (276)
++.++||+||+..|... .+|.+|.++..-. --.++++.+.+.+++ .++++. ++|++
T Consensus 483 ~~A~~aD~vIv~~G~~~~~e~E~~Dr~~l~Lp~--~Q~~LI~~va~~~~~pvIvVl~~g~Pv~ 543 (779)
T PLN03080 483 AIAKRADFVVVVAGLDLSQETEDHDRVSLLLPG--KQMDLISSVASVSKKPVVLVLTGGGPVD 543 (779)
T ss_pred HHhccCCEEEEEeCCCccccccCCCcccccCCc--cHHHHHHHHHhhcCCCEEEEEeCCceee
Confidence 46789999999887543 3455676543311 123556666665664 454444 47998
No 204
>PRK03673 hypothetical protein; Provisional
Probab=29.49 E-value=58 Score=31.06 Aligned_cols=40 Identities=20% Similarity=0.211 Sum_probs=26.7
Q ss_pred cccccccCCcccccceecCCCHH-------hhcCCCcEEEEcCCCCC
Q 023853 5 LAQNKFDVDSRAVRGFLGQQQLE-------DALTGMDIVIIPAGVPR 44 (276)
Q Consensus 5 ~~~~~~d~~~~~~~~i~~~~d~~-------~al~daDiVii~ag~~~ 44 (276)
|+-.+.++.....+..+..+|.+ ++++.+|+||+++|...
T Consensus 26 la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGGlGp 72 (396)
T PRK03673 26 LADFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGLGP 72 (396)
T ss_pred HHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCCCCC
Confidence 34456676666555555555543 36778999999999643
No 205
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=29.26 E-value=1.7e+02 Score=22.31 Aligned_cols=56 Identities=23% Similarity=0.202 Sum_probs=33.5
Q ss_pred HhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCC
Q 023853 27 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 83 (276)
Q Consensus 27 ~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP 83 (276)
..+..+.|+|++..|...--... ..-...-.+-++++.+.+.+..|++.+++++-|
T Consensus 60 ~~~~~~~d~vil~~G~ND~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~vv~~~~~ 115 (187)
T cd00229 60 ALLKDKPDLVIIELGTNDLGRGG-DTSIDEFKANLEELLDALRERAPGAKVILITPP 115 (187)
T ss_pred hhccCCCCEEEEEeccccccccc-ccCHHHHHHHHHHHHHHHHHHCCCCcEEEEeCC
Confidence 34678899999988755321110 011223345567777777777788877666533
No 206
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=29.11 E-value=1.2e+02 Score=25.06 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=31.9
Q ss_pred cCCCcEEEEcCCCCCC---------C-CCCH-HHHHHHHHHHHHHHHHHHHhhCCCcEEEEec
Q 023853 30 LTGMDIVIIPAGVPRK---------P-GMTR-DDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 81 (276)
Q Consensus 30 l~daDiVii~ag~~~k---------~-g~~r-~~~~~~N~~i~~~i~~~i~~~~p~~~vivvt 81 (276)
..+.|+|++..|...- + +..+ ..-..+-..-++++...+++.+|++.|++++
T Consensus 66 ~~~~d~V~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ir~~~p~~~Ivv~~ 128 (204)
T cd04506 66 LKKADVITITIGGNDLMQVLEKNFLSLDVEDFKKAEETYQNNLKKIFKEIRKLNPDAPIFLVG 128 (204)
T ss_pred cccCCEEEEEecchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 4589999998775421 0 0111 1112223344678888899989998877776
No 207
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=28.98 E-value=2.8e+02 Score=26.72 Aligned_cols=88 Identities=26% Similarity=0.340 Sum_probs=42.3
Q ss_pred CCCcEEEE-cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEec--CCCCCcHHHHHHHHHHcC-CCCCCCE
Q 023853 31 TGMDIVII-PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNSTVPIAAEVFKKVG-TYDPKRL 106 (276)
Q Consensus 31 ~daDiVii-~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvt--NP~d~~~~v~t~~~~~~~-~~~~~rv 106 (276)
.+.|+||+ |+|... .+...+.++........|+.+++|+. ..-| .+.. +..+. .+ ++
T Consensus 181 ~~~DvVIIDTaGr~~-----------~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~----~~~~-a~~f~~~v---~i 241 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQ-----------IDEELMEELAAIKEILNPDEILLVVDAMTGQD----AVNT-AKTFNERL---GL 241 (428)
T ss_pred cCCCEEEEeCCCccc-----------cCHHHHHHHHHHHHhhCCceEEEEEeccchHH----HHHH-HHHHHhhC---CC
Confidence 56898888 666432 11222333333333335888777774 2222 2222 22221 23 34
Q ss_pred EEE--eech-HHHHH--HHHHHHhCCCCCCceeeEEeec
Q 023853 107 LGV--TMLD-VVRAN--TFVAEVLGLDPREVDVPVVGGH 140 (276)
Q Consensus 107 iG~--t~ld-s~R~~--~~la~~l~v~~~~v~~~ViG~h 140 (276)
.|+ |.+| +.|.- ..++..++++ |.-...|++
T Consensus 242 ~giIlTKlD~~~~~G~~lsi~~~~~~P---I~fi~~Ge~ 277 (428)
T TIGR00959 242 TGVVLTKLDGDARGGAALSVRSVTGKP---IKFIGVGEK 277 (428)
T ss_pred CEEEEeCccCcccccHHHHHHHHHCcC---EEEEeCCCC
Confidence 455 7788 33433 3445667766 333344555
No 208
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.98 E-value=39 Score=30.92 Aligned_cols=41 Identities=27% Similarity=0.365 Sum_probs=27.2
Q ss_pred ccccccccCC---cccccce-ecCCCHHhhcCCCcEEEEcCCCCC
Q 023853 4 PLAQNKFDVD---SRAVRGF-LGQQQLEDALTGMDIVIIPAGVPR 44 (276)
Q Consensus 4 ~~~~~~~d~~---~~~~~~i-~~~~d~~~al~daDiVii~ag~~~ 44 (276)
||++=|..=. ..-|.-. +-|.|+++.++.|||||.+.|.|.
T Consensus 176 Pla~lL~~~~~~~~atVtv~hs~T~~l~~~~~~ADIvVsAvGkp~ 220 (297)
T PRK14168 176 PIANMMTQKGPGANATVTIVHTRSKNLARHCQRADILIVAAGVPN 220 (297)
T ss_pred HHHHHHHhcccCCCCEEEEecCCCcCHHHHHhhCCEEEEecCCcC
Confidence 6666654311 2233323 347799999999999999999663
No 209
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=28.97 E-value=1.2e+02 Score=25.00 Aligned_cols=48 Identities=15% Similarity=0.396 Sum_probs=31.4
Q ss_pred hcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 023853 29 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 85 (276)
Q Consensus 29 al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d 85 (276)
-+++||.+|+.-.... |.. +. |+ .+...+.+++++++..+++++|=.|
T Consensus 69 ~~~~a~~~ilvyd~~~-----~~S-f~-~~--~~~w~~~i~~~~~~~piilvgnK~D 116 (176)
T cd04133 69 SYRGADVFVLAFSLIS-----RAS-YE-NV--LKKWVPELRHYAPNVPIVLVGTKLD 116 (176)
T ss_pred hcCCCcEEEEEEEcCC-----HHH-HH-HH--HHHHHHHHHHhCCCCCEEEEEeChh
Confidence 5889999999765432 222 22 11 1344556667777888889999999
No 210
>PRK09325 coenzyme F420-reducing hydrogenase subunit beta; Validated
Probab=28.69 E-value=1.6e+02 Score=26.44 Aligned_cols=63 Identities=16% Similarity=0.154 Sum_probs=40.1
Q ss_pred hCCCcEEEEecCCCCCcHHHHHHH-HHHc----CCCCCCC--EEEE-e--echHHHHHHHHHHHhCCCCCCceeeEE
Q 023853 71 CCPKAIVNLISNPVNSTVPIAAEV-FKKV----GTYDPKR--LLGV-T--MLDVVRANTFVAEVLGLDPREVDVPVV 137 (276)
Q Consensus 71 ~~p~~~vivvtNP~d~~~~v~t~~-~~~~----~~~~~~r--viG~-t--~lds~R~~~~la~~l~v~~~~v~~~Vi 137 (276)
..+...+.+++.|++ +-+-. +++. ..+..+- +||+ | ..+...++.+|.+++++++.+|..+-+
T Consensus 91 ~~~~~kva~VGtPCq----I~alr~l~~~~~~~~~~~d~l~~~Igl~C~g~~~~~~~~~~l~~~~g~~~~~v~~~~~ 163 (282)
T PRK09325 91 EYGLDKVGIVGTPCQ----IQAVRKAQLYPVGMRHVPDKIALIVGIFCMENFPYEGLKTIVEDHCGVKMEDVKKMDI 163 (282)
T ss_pred hcCCCeEEEEccChH----HHHHHHHHhccccccccccceeEEEcccCCCCCCHHHHHHHHHHHhCCCHHHeeEEEE
Confidence 345689999999999 54421 1111 1111222 5788 7 466677788898878998888775444
No 211
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=28.63 E-value=1.4e+02 Score=27.18 Aligned_cols=51 Identities=10% Similarity=0.271 Sum_probs=32.8
Q ss_pred ceecCCCHHhhc-CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh-h-CCCcEEEEecCCCC
Q 023853 19 GFLGQQQLEDAL-TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAK-C-CPKAIVNLISNPVN 85 (276)
Q Consensus 19 ~i~~~~d~~~al-~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~-~-~p~~~vivvtNP~d 85 (276)
.+..+.|+++++ .++|+||++.- ..-+.++.+.+.. + .++..++.++|=.+
T Consensus 57 ~i~~~~~~~~~~~~~~Dliiiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~ 110 (326)
T PRK14620 57 NISVKSAIDEVLSDNATCIILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIE 110 (326)
T ss_pred CeEEeCCHHHHHhCCCCEEEEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence 355678888777 58999999752 2233444444544 3 46677777887764
No 212
>PLN02342 ornithine carbamoyltransferase
Probab=28.60 E-value=75 Score=29.76 Aligned_cols=22 Identities=18% Similarity=0.216 Sum_probs=19.6
Q ss_pred ceecCCCHHhhcCCCcEEEEcC
Q 023853 19 GFLGQQQLEDALTGMDIVIIPA 40 (276)
Q Consensus 19 ~i~~~~d~~~al~daDiVii~a 40 (276)
++..++|++++++|||+|..+.
T Consensus 246 ~~~~~~d~~eav~~aDVvy~~~ 267 (348)
T PLN02342 246 KIEITNDPAEAVKGADVVYTDV 267 (348)
T ss_pred cEEEEcCHHHHhCCCCEEEECC
Confidence 6788999999999999999874
No 213
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=28.58 E-value=1.2e+02 Score=26.70 Aligned_cols=73 Identities=11% Similarity=0.142 Sum_probs=50.6
Q ss_pred ccccccCCccccc-ceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 023853 6 AQNKFDVDSRAVR-GFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 84 (276)
Q Consensus 6 ~~~~~d~~~~~~~-~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~ 84 (276)
-+++-||.+-.-- +-..+.+.+.-+++++.+|........ -....+..+.++...+.+++|++.+-|.=.-+
T Consensus 49 ~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~-------~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~ 121 (232)
T PF04670_consen 49 PLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSD-------DYDEDLAYLSDCIEALRQYSPNIKVFVFIHKM 121 (232)
T ss_dssp EEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-S-------TCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-C
T ss_pred EEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccc-------cHHHHHHHHHHHHHHHHHhCCCCeEEEEEeec
Confidence 4678887765322 112246778889999999987543311 15667888999999999999999888887788
Q ss_pred C
Q 023853 85 N 85 (276)
Q Consensus 85 d 85 (276)
|
T Consensus 122 D 122 (232)
T PF04670_consen 122 D 122 (232)
T ss_dssp C
T ss_pred c
Confidence 8
No 214
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.52 E-value=24 Score=32.06 Aligned_cols=40 Identities=25% Similarity=0.246 Sum_probs=27.3
Q ss_pred ccccccccCCccccccee-cCCCHHhhcCCCcEEEEcCCCCC
Q 023853 4 PLAQNKFDVDSRAVRGFL-GQQQLEDALTGMDIVIIPAGVPR 44 (276)
Q Consensus 4 ~~~~~~~d~~~~~~~~i~-~~~d~~~al~daDiVii~ag~~~ 44 (276)
||++=|.. ...-|.-.. -|.|+++.++.|||||.+.|.|.
T Consensus 172 Pla~lL~~-~gAtVtv~hs~t~~l~~~~~~ADIvV~AvG~p~ 212 (285)
T PRK14191 172 PLAMLMLN-AGASVSVCHILTKDLSFYTQNADIVCVGVGKPD 212 (285)
T ss_pred HHHHHHHH-CCCEEEEEeCCcHHHHHHHHhCCEEEEecCCCC
Confidence 66666654 233344333 36688889999999999998663
No 215
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=28.44 E-value=1.9e+02 Score=26.22 Aligned_cols=112 Identities=13% Similarity=0.051 Sum_probs=61.0
Q ss_pred CHHhhcC--CCcEEEEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhC-------CC-cEEEEecCCCCCc-----
Q 023853 25 QLEDALT--GMDIVIIPAGVPRK--PGMTRDDLFNINAGIVKTLCEGIAKCC-------PK-AIVNLISNPVNST----- 87 (276)
Q Consensus 25 d~~~al~--daDiVii~ag~~~k--~g~~r~~~~~~N~~i~~~i~~~i~~~~-------p~-~~vivvtNP~d~~----- 87 (276)
+++++++ +.|+||-+++.... ......+.+..|+.....+.+.+.++. .+ ..++.+|-..-.-
T Consensus 64 ~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~ 143 (352)
T PRK10084 64 ELDRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHP 143 (352)
T ss_pred HHHHHHHhcCCCEEEECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCcc
Confidence 3455564 47999999886421 122346678899999999999888751 12 2445444211000
Q ss_pred --------HHHHHHHHHHcCCCCCCCEEEEeechHHHHHHHHHHHhCCCCCCce-eeEEeec
Q 023853 88 --------VPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH 140 (276)
Q Consensus 88 --------~~v~t~~~~~~~~~~~~rviG~t~lds~R~~~~la~~l~v~~~~v~-~~ViG~h 140 (276)
.+.++ ....+.+...-|.+.....++-..+++..+++.--++ ..|.|.+
T Consensus 144 ~~~~~~~~~~~~~----E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~ 201 (352)
T PRK10084 144 DEVENSEELPLFT----ETTAYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPY 201 (352)
T ss_pred ccccccccCCCcc----ccCCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCC
Confidence 00000 1112233444555444444444555677787765566 5577765
No 216
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=28.17 E-value=93 Score=28.42 Aligned_cols=42 Identities=21% Similarity=0.321 Sum_probs=27.0
Q ss_pred cceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 023853 18 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAK 70 (276)
Q Consensus 18 ~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~ 70 (276)
-++..++|=.||.++||++|+---. | .....|++++++.|.+
T Consensus 127 aGvkVtsDD~EAvk~aei~I~ftPf----G-------~~t~~Iikki~~~ipE 168 (342)
T PRK00961 127 LGLKVTTDDREAVADADIVITWLPK----G-------GMQPDIIEKFADDIKE 168 (342)
T ss_pred cCceEecCcHHHhcCCCEEEEecCC----C-------CCchHHHHHHHhhCCC
Confidence 3455655555699999999983211 1 2246788888887754
No 217
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=28.08 E-value=45 Score=30.57 Aligned_cols=39 Identities=23% Similarity=0.248 Sum_probs=26.6
Q ss_pred ccccccccCCccccccee-cCCCHHhhcCCCcEEEEcCCCC
Q 023853 4 PLAQNKFDVDSRAVRGFL-GQQQLEDALTGMDIVIIPAGVP 43 (276)
Q Consensus 4 ~~~~~~~d~~~~~~~~i~-~~~d~~~al~daDiVii~ag~~ 43 (276)
||+|=|.. ...-|.-.. -|.|+++.+++|||||.+.|.|
T Consensus 182 Pla~lL~~-~~ATVtvchs~T~nl~~~~~~ADIvv~AvGk~ 221 (299)
T PLN02516 182 PVSLLLLK-ADATVTVVHSRTPDPESIVREADIVIAAAGQA 221 (299)
T ss_pred HHHHHHHH-CCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCc
Confidence 66666643 223333332 3678999999999999999865
No 218
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=28.00 E-value=2.3e+02 Score=23.29 Aligned_cols=86 Identities=15% Similarity=0.060 Sum_probs=44.8
Q ss_pred CCCcEEEEcCCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHcCCCCCCC
Q 023853 31 TGMDIVIIPAGVPRKPGM-----TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR 105 (276)
Q Consensus 31 ~daDiVii~ag~~~k~g~-----~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d~~~~v~t~~~~~~~~~~~~r 105 (276)
+..|+||+..|...-... ...+.+..|+ .++...+++. ++.+|++|.|... .++..+
T Consensus 64 ~~pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl---~~ii~~~~~~--~~~~il~tp~~~~-------------~~~~~~ 125 (198)
T cd01821 64 KPGDYVLIQFGHNDQKPKDPEYTEPYTTYKEYL---RRYIAEARAK--GATPILVTPVTRR-------------TFDEGG 125 (198)
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCcHHHHHHHH---HHHHHHHHHC--CCeEEEECCcccc-------------ccCCCC
Confidence 378999999886542221 2455566664 4555566654 4555666644320 111111
Q ss_pred EEEEeechHHHHHHHHHHHhCCCCCCcee
Q 023853 106 LLGVTMLDVVRANTFVAEVLGLDPREVDV 134 (276)
Q Consensus 106 viG~t~lds~R~~~~la~~l~v~~~~v~~ 134 (276)
.+--..-+-.++.+.+|++.|+.--++..
T Consensus 126 ~~~~~~~~~~~~~~~~a~~~~~~~vD~~~ 154 (198)
T cd01821 126 KVEDTLGDYPAAMRELAAEEGVPLIDLNA 154 (198)
T ss_pred cccccchhHHHHHHHHHHHhCCCEEecHH
Confidence 00001112245566788888877656553
No 219
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.97 E-value=44 Score=30.40 Aligned_cols=39 Identities=23% Similarity=0.257 Sum_probs=27.4
Q ss_pred ccccccccCCccccccee-cCCCHHhhcCCCcEEEEcCCCC
Q 023853 4 PLAQNKFDVDSRAVRGFL-GQQQLEDALTGMDIVIIPAGVP 43 (276)
Q Consensus 4 ~~~~~~~d~~~~~~~~i~-~~~d~~~al~daDiVii~ag~~ 43 (276)
||+|=|.. ...-|.-.. -|.|+++-++.|||||.+.|.|
T Consensus 174 Pla~lL~~-~~atVt~chs~T~~l~~~~~~ADIvIsAvGk~ 213 (284)
T PRK14177 174 PMAMLLTE-MNATVTLCHSKTQNLPSIVRQADIIVGAVGKP 213 (284)
T ss_pred HHHHHHHH-CCCEEEEeCCCCCCHHHHHhhCCEEEEeCCCc
Confidence 66766663 223333333 4678998999999999999965
No 220
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=27.87 E-value=1.3e+02 Score=24.09 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=28.6
Q ss_pred hcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 023853 29 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 85 (276)
Q Consensus 29 al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d 85 (276)
-+.++|.+|+.-.... +.. ..-++.....+.++.++.-++++.|..|
T Consensus 69 ~~~~~d~~i~v~d~~~-----~~s-----~~~~~~~~~~i~~~~~~~piiiv~nK~D 115 (166)
T cd00877 69 YYIGGQCAIIMFDVTS-----RVT-----YKNVPNWHRDLVRVCGNIPIVLCGNKVD 115 (166)
T ss_pred HhcCCCEEEEEEECCC-----HHH-----HHHHHHHHHHHHHhCCCCcEEEEEEchh
Confidence 4678888888654321 111 1223445556666666666788889999
No 221
>KOG1504 consensus Ornithine carbamoyltransferase OTC/ARG3 [Amino acid transport and metabolism]
Probab=27.85 E-value=82 Score=28.42 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=21.4
Q ss_pred ccccceecCCCHHhhcCCCcEEEEc
Q 023853 15 RAVRGFLGQQQLEDALTGMDIVIIP 39 (276)
Q Consensus 15 ~~~~~i~~~~d~~~al~daDiVii~ 39 (276)
-...+|..|+|+.+|..+|||++.-
T Consensus 241 eNgsk~eltnDp~eA~~~anvlvtD 265 (346)
T KOG1504|consen 241 ENGSKFELTNDPLEAVIGANVLVTD 265 (346)
T ss_pred hcCCEEEEecChHHhhcCCcEEEEe
Confidence 3467899999999999999998873
No 222
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=27.77 E-value=1.9e+02 Score=22.21 Aligned_cols=62 Identities=11% Similarity=0.004 Sum_probs=37.4
Q ss_pred CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEE-EEecC-CCCCcHHHHHHHHHHcCCCCCCCEEE
Q 023853 31 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV-NLISN-PVNSTVPIAAEVFKKVGTYDPKRLLG 108 (276)
Q Consensus 31 ~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~v-ivvtN-P~d~~~~v~t~~~~~~~~~~~~rviG 108 (276)
.++|+|.++... ....+.++++++.+++.+++.+. ++-++ |.+ .... ++..|+ ..+|+
T Consensus 49 ~~~d~V~iS~~~------------~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~----~~~~--~~~~G~--d~~~~ 108 (122)
T cd02071 49 EDVDVIGLSSLS------------GGHMTLFPEVIELLRELGAGDILVVGGGIIPPE----DYEL--LKEMGV--AEIFG 108 (122)
T ss_pred cCCCEEEEcccc------------hhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHH----HHHH--HHHCCC--CEEEC
Confidence 478888886542 34556678899999998775544 44444 433 3332 234565 46887
Q ss_pred E-eec
Q 023853 109 V-TML 112 (276)
Q Consensus 109 ~-t~l 112 (276)
. |..
T Consensus 109 ~~~~~ 113 (122)
T cd02071 109 PGTSI 113 (122)
T ss_pred CCCCH
Confidence 7 543
No 223
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.17 E-value=46 Score=30.14 Aligned_cols=40 Identities=23% Similarity=0.419 Sum_probs=27.8
Q ss_pred ccccccccCCccccccee-cCCCHHhhcCCCcEEEEcCCCCC
Q 023853 4 PLAQNKFDVDSRAVRGFL-GQQQLEDALTGMDIVIIPAGVPR 44 (276)
Q Consensus 4 ~~~~~~~d~~~~~~~~i~-~~~d~~~al~daDiVii~ag~~~ 44 (276)
||+|=|.. ...-|.-.. -|.|+++-++.|||||.+.|.|.
T Consensus 173 Pla~lL~~-~~AtVt~chs~T~~l~~~~~~ADIvIsAvGkp~ 213 (278)
T PRK14172 173 PVAQLLLN-ENATVTICHSKTKNLKEVCKKADILVVAIGRPK 213 (278)
T ss_pred HHHHHHHH-CCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcC
Confidence 67776654 223343332 36789988999999999999663
No 224
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=26.95 E-value=2.7e+02 Score=24.89 Aligned_cols=75 Identities=21% Similarity=0.245 Sum_probs=46.4
Q ss_pred echHHHHHHHHHHHhCCCCCCceeeEEeecCCCeeeecccCCCCCCCCChhHHHHHHHHHhcCccceeeccCCCCchhHH
Q 023853 111 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLS 190 (276)
Q Consensus 111 ~lds~R~~~~la~~l~v~~~~v~~~ViG~hgg~~~vp~~s~~~~~~~~~~~~~~~i~~~v~~~~~~ii~~k~gkg~~~~s 190 (276)
.+|...+++++-..+ ...|++.+++++.|+ ++ .++.+++.++.+.+.+....++. |-|+.+..
T Consensus 16 ~iD~~~~~~li~~l~---~~Gv~Gl~~~GstGE--~~---------~Lt~eEr~~l~~~~~~~~~~vi~---gvg~~~~~ 78 (279)
T cd00953 16 KIDKEKFKKHCENLI---SKGIDYVFVAGTTGL--GP---------SLSFQEKLELLKAYSDITDKVIF---QVGSLNLE 78 (279)
T ss_pred CcCHHHHHHHHHHHH---HcCCcEEEEcccCCC--cc---------cCCHHHHHHHHHHHHHHcCCEEE---EeCcCCHH
Confidence 478888888776555 366887766544343 21 36778887777766654444554 44556666
Q ss_pred HHHHHHHHHHHH
Q 023853 191 MAYAAAKFADAC 202 (276)
Q Consensus 191 ~A~a~~~li~ai 202 (276)
.+...++..+.+
T Consensus 79 ~ai~~a~~a~~~ 90 (279)
T cd00953 79 ESIELARAAKSF 90 (279)
T ss_pred HHHHHHHHHHHc
Confidence 655666665555
No 225
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=26.95 E-value=1.9e+02 Score=25.97 Aligned_cols=67 Identities=18% Similarity=0.289 Sum_probs=37.3
Q ss_pred CCcEEEE-cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEec---CCCCCcHHHHHHHHHHcCCCCCCCEE
Q 023853 32 GMDIVII-PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS---NPVNSTVPIAAEVFKKVGTYDPKRLL 107 (276)
Q Consensus 32 daDiVii-~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvt---NP~d~~~~v~t~~~~~~~~~~~~rvi 107 (276)
+.|+||| |+|...+. ..-++++.+.+....|+-+++|++ .+.| +...++++..++...+|
T Consensus 154 ~~D~ViIDt~Gr~~~~-----------~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d-----~~~~~~~f~~~~~~~~I 217 (270)
T PRK06731 154 RVDYILIDTAGKNYRA-----------SETVEEMIETMGQVEPDYICLTLSASMKSKD-----MIEIITNFKDIHIDGIV 217 (270)
T ss_pred CCCEEEEECCCCCcCC-----------HHHHHHHHHHHhhhCCCeEEEEEcCccCHHH-----HHHHHHHhCCCCCCEEE
Confidence 6899999 66654311 223334444444556776666663 3444 33455666556655553
Q ss_pred EEeechHH
Q 023853 108 GVTMLDVV 115 (276)
Q Consensus 108 G~t~lds~ 115 (276)
+|-||..
T Consensus 218 -~TKlDet 224 (270)
T PRK06731 218 -FTKFDET 224 (270)
T ss_pred -EEeecCC
Confidence 3777763
No 226
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=26.69 E-value=1.3e+02 Score=25.18 Aligned_cols=66 Identities=15% Similarity=0.179 Sum_probs=36.4
Q ss_pred cccccccCCcccccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 023853 5 LAQNKFDVDSRAVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 84 (276)
Q Consensus 5 ~~~~~~d~~~~~~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~ 84 (276)
..+++.|.+...- .+ ....+++||++|+...... +.. + .|+. ....+.+++++++..+++++|=.
T Consensus 66 v~l~iwDTaG~~~-~~-----~~~~~~~ad~iilv~d~t~-----~~S-f-~~~~--~~w~~~i~~~~~~~piilvgNK~ 130 (195)
T cd01873 66 VSLRLWDTFGDHD-KD-----RRFAYGRSDVVLLCFSIAS-----PNS-L-RNVK--TMWYPEIRHFCPRVPVILVGCKL 130 (195)
T ss_pred EEEEEEeCCCChh-hh-----hcccCCCCCEEEEEEECCC-----hhH-H-HHHH--HHHHHHHHHhCCCCCEEEEEEch
Confidence 4556667655421 11 1124789999999765432 111 1 1111 11333455566777778889999
Q ss_pred C
Q 023853 85 N 85 (276)
Q Consensus 85 d 85 (276)
|
T Consensus 131 D 131 (195)
T cd01873 131 D 131 (195)
T ss_pred h
Confidence 9
No 227
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=26.30 E-value=39 Score=30.65 Aligned_cols=40 Identities=25% Similarity=0.372 Sum_probs=26.5
Q ss_pred ccccccccCCcccccce-ecCCCHHhhcCCCcEEEEcCCCCC
Q 023853 4 PLAQNKFDVDSRAVRGF-LGQQQLEDALTGMDIVIIPAGVPR 44 (276)
Q Consensus 4 ~~~~~~~d~~~~~~~~i-~~~~d~~~al~daDiVii~ag~~~ 44 (276)
||++.|-- +.+-|.=- +.|.|+.+-++.|||||.+.|.|.
T Consensus 171 Pla~lL~~-~naTVtvcHs~T~~l~~~~k~ADIvv~AvG~p~ 211 (283)
T COG0190 171 PLALLLLN-ANATVTVCHSRTKDLASITKNADIVVVAVGKPH 211 (283)
T ss_pred HHHHHHHh-CCCEEEEEcCCCCCHHHHhhhCCEEEEecCCcc
Confidence 55555544 22333322 235689999999999999999774
No 228
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=26.05 E-value=2.5e+02 Score=25.82 Aligned_cols=47 Identities=17% Similarity=0.284 Sum_probs=26.9
Q ss_pred cCCCcEEEE-cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEec
Q 023853 30 LTGMDIVII-PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 81 (276)
Q Consensus 30 l~daDiVii-~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvt 81 (276)
.++.|+||| |+|... ..+.+..-+.-+..+++.+....|+..++|+.
T Consensus 194 ~~~~D~ViIDTaGr~~-----~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~ 241 (318)
T PRK10416 194 ARGIDVLIIDTAGRLH-----NKTNLMEELKKIKRVIKKADPDAPHEVLLVLD 241 (318)
T ss_pred hCCCCEEEEeCCCCCc-----CCHHHHHHHHHHHHHHhhhcCCCCceEEEEEE
Confidence 478899999 666432 22222223334444555555567888777763
No 229
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=25.70 E-value=49 Score=30.24 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=18.1
Q ss_pred cceecCCCHHhhcCCCcEEEEcCC
Q 023853 18 RGFLGQQQLEDALTGMDIVIIPAG 41 (276)
Q Consensus 18 ~~i~~~~d~~~al~daDiVii~ag 41 (276)
.++....|.++++++||||+.+..
T Consensus 178 ~~v~~~~~~~~av~~aDii~taT~ 201 (313)
T PF02423_consen 178 VPVVAVDSAEEAVRGADIIVTATP 201 (313)
T ss_dssp TCEEEESSHHHHHTTSSEEEE---
T ss_pred ccceeccchhhhcccCCEEEEccC
Confidence 456778899999999999888544
No 230
>PRK03670 competence damage-inducible protein A; Provisional
Probab=25.58 E-value=88 Score=27.83 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=26.9
Q ss_pred cccccccCCcccccceecCCCHH-------hhcC-CCcEEEEcCCCCCC-CCCCH
Q 023853 5 LAQNKFDVDSRAVRGFLGQQQLE-------DALT-GMDIVIIPAGVPRK-PGMTR 50 (276)
Q Consensus 5 ~~~~~~d~~~~~~~~i~~~~d~~-------~al~-daDiVii~ag~~~k-~g~~r 50 (276)
|+-.+.++.....+.....+|.+ +++. .+|+||+++|.... .+.++
T Consensus 25 la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGlGpt~dD~T~ 79 (252)
T PRK03670 25 IAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGLGPTHDDVTM 79 (252)
T ss_pred HHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCccCCCCCchH
Confidence 34456666666555444555544 3455 37999999996433 33444
No 231
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.40 E-value=52 Score=29.87 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=27.5
Q ss_pred ccccccccCCcccccce-ecCCCHHhhcCCCcEEEEcCCCCC
Q 023853 4 PLAQNKFDVDSRAVRGF-LGQQQLEDALTGMDIVIIPAGVPR 44 (276)
Q Consensus 4 ~~~~~~~d~~~~~~~~i-~~~~d~~~al~daDiVii~ag~~~ 44 (276)
||++=|.. ...-|... +-|.|+++-++.|||||.+.|.|.
T Consensus 173 Pla~lL~~-~~ATVt~chs~T~dl~~~~k~ADIvIsAvGkp~ 213 (282)
T PRK14180 173 PVSQLLLN-AKATVTTCHRFTTDLKSHTTKADILIVAVGKPN 213 (282)
T ss_pred HHHHHHHH-CCCEEEEEcCCCCCHHHHhhhcCEEEEccCCcC
Confidence 66666643 22334333 236789988999999999999663
No 232
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=25.35 E-value=1.9e+02 Score=22.78 Aligned_cols=49 Identities=14% Similarity=0.232 Sum_probs=29.0
Q ss_pred HhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 023853 27 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 85 (276)
Q Consensus 27 ~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d 85 (276)
+..++++|++++...... +.. + .+ ++++...+.+..++.-++++.|-.|
T Consensus 67 ~~~~~~~d~~i~v~d~~~-----~~s-~-~~---~~~~~~~i~~~~~~~p~ivv~nK~D 115 (161)
T cd04124 67 ASYYHKAHACILVFDVTR-----KIT-Y-KN---LSKWYEELREYRPEIPCIVVANKID 115 (161)
T ss_pred HHHhCCCCEEEEEEECCC-----HHH-H-HH---HHHHHHHHHHhCCCCcEEEEEECcc
Confidence 346888998888754321 111 1 11 2344555556666666778888888
No 233
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=25.33 E-value=1.2e+02 Score=27.48 Aligned_cols=50 Identities=20% Similarity=0.129 Sum_probs=34.8
Q ss_pred CCcEEEEcCCCCC-CCCCCHHHH-HHHHHHHHHHHHHHHHhhCC--CcEEEEec
Q 023853 32 GMDIVIIPAGVPR-KPGMTRDDL-FNINAGIVKTLCEGIAKCCP--KAIVNLIS 81 (276)
Q Consensus 32 daDiVii~ag~~~-k~g~~r~~~-~~~N~~i~~~i~~~i~~~~p--~~~vivvt 81 (276)
.-||+|+|+...- |...+..++ -=+|++.|-+-++..++|-| |..||+++
T Consensus 154 ~PDIlViTGHD~~~K~~~d~~dl~~YrnSkyFVeaV~~aR~~ep~~D~LVIfAG 207 (287)
T PF05582_consen 154 RPDILVITGHDGYLKNKKDYSDLNNYRNSKYFVEAVKEARKYEPNLDDLVIFAG 207 (287)
T ss_pred CCCEEEEeCchhhhcCCCChhhhhhhhccHHHHHHHHHHHhcCCCcccEEEEcc
Confidence 4699999987543 222233332 23799999999999999976 45776665
No 234
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=25.32 E-value=1.5e+02 Score=25.01 Aligned_cols=67 Identities=19% Similarity=0.222 Sum_probs=38.5
Q ss_pred cccccccCCcccccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 023853 5 LAQNKFDVDSRAVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 84 (276)
Q Consensus 5 ~~~~~~d~~~~~~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~ 84 (276)
+.+++.|++... .+.. -....+++||++|+.-.... +..+ .-++...+.+.+++++.-+++++|=.
T Consensus 44 ~~l~iwDt~G~e--~~~~--l~~~~~~~ad~~ilV~D~t~-----~~S~-----~~i~~w~~~i~~~~~~~piilvgNK~ 109 (200)
T smart00176 44 IRFNVWDTAGQE--KFGG--LRDGYYIQGQCAIIMFDVTA-----RVTY-----KNVPNWHRDLVRVCENIPIVLCGNKV 109 (200)
T ss_pred EEEEEEECCCch--hhhh--hhHHHhcCCCEEEEEEECCC-----hHHH-----HHHHHHHHHHHHhCCCCCEEEEEECc
Confidence 445666755431 1111 12235889999998754332 2221 11234555666667777788889999
Q ss_pred C
Q 023853 85 N 85 (276)
Q Consensus 85 d 85 (276)
|
T Consensus 110 D 110 (200)
T smart00176 110 D 110 (200)
T ss_pred c
Confidence 9
No 235
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=25.21 E-value=1.2e+02 Score=27.70 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=18.8
Q ss_pred ceecCCCHHhhcCCCcEEEEcC
Q 023853 19 GFLGQQQLEDALTGMDIVIIPA 40 (276)
Q Consensus 19 ~i~~~~d~~~al~daDiVii~a 40 (276)
++..+.|+++++++||+|....
T Consensus 204 ~~~~~~d~~~a~~~aDvvy~~~ 225 (304)
T PRK00779 204 SIEVTHDPKEAVKGADVVYTDV 225 (304)
T ss_pred eEEEEcCHHHHhCCCCEEEecC
Confidence 3667899999999999999863
No 236
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.14 E-value=52 Score=30.08 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=20.5
Q ss_pred ecCCCHHhhcCCCcEEEEcCCCCC
Q 023853 21 LGQQQLEDALTGMDIVIIPAGVPR 44 (276)
Q Consensus 21 ~~~~d~~~al~daDiVii~ag~~~ 44 (276)
+-|.|+++-++.|||||.+.|.|.
T Consensus 193 s~T~nl~~~~~~ADIvIsAvGkp~ 216 (293)
T PRK14185 193 SRSKNLKKECLEADIIIAALGQPE 216 (293)
T ss_pred CCCCCHHHHHhhCCEEEEccCCcC
Confidence 347799999999999999999664
No 237
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=25.08 E-value=3e+02 Score=26.41 Aligned_cols=71 Identities=20% Similarity=0.268 Sum_probs=39.5
Q ss_pred hhcCCCcEEEE-cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEe--cCCCCCcHHHHHHHHHHcCCCCCC
Q 023853 28 DALTGMDIVII-PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI--SNPVNSTVPIAAEVFKKVGTYDPK 104 (276)
Q Consensus 28 ~al~daDiVii-~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivv--tNP~d~~~~v~t~~~~~~~~~~~~ 104 (276)
.+++++|+|++ |+|.+.+..+ -+.++..-+....+.-..+++ |--.. .|-+++.+++-+|..
T Consensus 277 ~~l~~~d~ILVDTaGrs~~D~~-----------~i~el~~~~~~~~~i~~~Lvlsat~K~~----dlkei~~~f~~~~i~ 341 (407)
T COG1419 277 EALRDCDVILVDTAGRSQYDKE-----------KIEELKELIDVSHSIEVYLVLSATTKYE----DLKEIIKQFSLFPID 341 (407)
T ss_pred HHhhcCCEEEEeCCCCCccCHH-----------HHHHHHHHHhccccceEEEEEecCcchH----HHHHHHHHhccCCcc
Confidence 46899999999 7887653222 222222223222222233333 22222 566778888888887
Q ss_pred CEEEEeechH
Q 023853 105 RLLGVTMLDV 114 (276)
Q Consensus 105 rviG~t~lds 114 (276)
.+| +|-+|.
T Consensus 342 ~~I-~TKlDE 350 (407)
T COG1419 342 GLI-FTKLDE 350 (407)
T ss_pred eeE-EEcccc
Confidence 775 365665
No 238
>CHL00194 ycf39 Ycf39; Provisional
Probab=25.03 E-value=1.5e+02 Score=26.72 Aligned_cols=54 Identities=15% Similarity=0.053 Sum_probs=35.0
Q ss_pred CCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEec
Q 023853 24 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 81 (276)
Q Consensus 24 ~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvt 81 (276)
.++.++++++|+||.+++.... ........|..-...+.+.+++.+-+ .+|.+|
T Consensus 56 ~~l~~al~g~d~Vi~~~~~~~~---~~~~~~~~~~~~~~~l~~aa~~~gvk-r~I~~S 109 (317)
T CHL00194 56 ETLPPSFKGVTAIIDASTSRPS---DLYNAKQIDWDGKLALIEAAKAAKIK-RFIFFS 109 (317)
T ss_pred HHHHHHHCCCCEEEECCCCCCC---CccchhhhhHHHHHHHHHHHHHcCCC-EEEEec
Confidence 3567889999999987653221 12234456777777888888887654 444444
No 239
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=24.51 E-value=5e+02 Score=22.98 Aligned_cols=88 Identities=13% Similarity=0.145 Sum_probs=54.9
Q ss_pred hhcCCCcEEEEcCCCCC-CCCC---CHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHcCCCCC
Q 023853 28 DALTGMDIVIIPAGVPR-KPGM---TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP 103 (276)
Q Consensus 28 ~al~daDiVii~ag~~~-k~g~---~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d~~~~v~t~~~~~~~~~~~ 103 (276)
.-++++.|.++..+... ++.. ...++....-..++++++.|...+++.++ +-..=.| +..+++.+
T Consensus 82 ~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl-~~k~I~~----~a~~~l~k------ 150 (261)
T cd03334 82 SKIKNPRILLLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVIL-VEKSVSR----IAQDLLLE------ 150 (261)
T ss_pred cccCCCcEEEEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE-ECCccCH----HHHHHHHH------
Confidence 35789999999776532 2221 24455566678899999999999888532 3333344 55555554
Q ss_pred CCEEEEeechHHHHHHHHHHHhCC
Q 023853 104 KRLLGVTMLDVVRANTFVAEVLGL 127 (276)
Q Consensus 104 ~rviG~t~lds~R~~~~la~~l~v 127 (276)
++|..+......-+ ..||+.+|.
T Consensus 151 ~gI~~v~~v~~~dl-~rIa~~tGa 173 (261)
T cd03334 151 AGITLVLNVKPSVL-ERISRCTGA 173 (261)
T ss_pred CCCEEEEecCHHHH-HHHHHHhCC
Confidence 46777755544333 346777764
No 240
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=24.49 E-value=1.8e+02 Score=25.41 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=10.2
Q ss_pred cCCCHHhhcCCCcEEEEcC
Q 023853 22 GQQQLEDALTGMDIVIIPA 40 (276)
Q Consensus 22 ~~~d~~~al~daDiVii~a 40 (276)
.+.+.++.+++||+||++.
T Consensus 52 ~~~~~~~~~~~advVil~v 70 (267)
T PRK11880 52 AATDNQEAAQEADVVVLAV 70 (267)
T ss_pred ecCChHHHHhcCCEEEEEc
Confidence 3445555556666666543
No 241
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=24.49 E-value=52 Score=30.23 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=18.6
Q ss_pred ceecCCCHHhhcCCCcEEEEc
Q 023853 19 GFLGQQQLEDALTGMDIVIIP 39 (276)
Q Consensus 19 ~i~~~~d~~~al~daDiVii~ 39 (276)
+++.+.|+++|+++||+|..+
T Consensus 204 ~~~~~~d~~ea~~~aDvvy~~ 224 (310)
T PRK13814 204 SIKKFTELKPSLLNSDVIVTL 224 (310)
T ss_pred eEEEEcCHHHHhCCCCEEEEC
Confidence 578889999999999999874
No 242
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=24.33 E-value=1.7e+02 Score=26.97 Aligned_cols=19 Identities=16% Similarity=0.366 Sum_probs=15.8
Q ss_pred cCCCHHhhcCCCcEEEEcC
Q 023853 22 GQQQLEDALTGMDIVIIPA 40 (276)
Q Consensus 22 ~~~d~~~al~daDiVii~a 40 (276)
.+.++++++++||+|++..
T Consensus 188 ~~~~l~ell~~aDiVil~l 206 (330)
T PRK12480 188 YKDSVKEAIKDADIISLHV 206 (330)
T ss_pred ccCCHHHHHhcCCEEEEeC
Confidence 3457999999999999975
No 243
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=24.29 E-value=2.5e+02 Score=24.45 Aligned_cols=66 Identities=21% Similarity=0.204 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHcCCCCCCCEEEEee------chHHHHHHHHHHHhCCCCC
Q 023853 61 VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTM------LDVVRANTFVAEVLGLDPR 130 (276)
Q Consensus 61 ~~~i~~~i~~~~p~~~vivvtNP~d~~~~v~t~~~~~~~~~~~~rviG~t~------lds~R~~~~la~~l~v~~~ 130 (276)
+..+-+.+++.+.+++++-+|.=+|+. +++.++.++.+ +.++++++. -++...-..+++.+|++..
T Consensus 11 ~~~l~~~~~~~~~~~vvv~lSGGiDSs--~~a~la~~~~~--~~~v~~~~~~~~~~~~~~~~~a~~~a~~lgi~~~ 82 (248)
T cd00553 11 VLFLRDYLRKSGFKGVVLGLSGGIDSA--LVAALAVRALG--RENVLALFMPSRYSSEETREDAKELAEALGIEHV 82 (248)
T ss_pred HHHHHHHHHHhCCCCEEEeCCCcHHHH--HHHHHHHHHhC--cccEEEEECCCCCCCHHHHHHHHHHHHHhCCeEE
Confidence 344445555667788888898889964 34455556533 467888842 2344556778899987643
No 244
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=24.16 E-value=1.6e+02 Score=25.72 Aligned_cols=48 Identities=19% Similarity=0.324 Sum_probs=29.1
Q ss_pred hcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 023853 29 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 85 (276)
Q Consensus 29 al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d 85 (276)
.+++||++|+.-.... +. -+.. +.....+.+.+++|+..+++++|=.|
T Consensus 81 ~~~~ad~vIlVyDit~-----~~-Sf~~---~~~~w~~~i~~~~~~~piilVgNK~D 128 (232)
T cd04174 81 CYSDSDAVLLCFDISR-----PE-TVDS---ALKKWKAEIMDYCPSTRILLIGCKTD 128 (232)
T ss_pred HcCCCcEEEEEEECCC-----hH-HHHH---HHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 4788998888754331 11 1211 12334455666677777788888888
No 245
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=24.05 E-value=3.3e+02 Score=25.85 Aligned_cols=72 Identities=18% Similarity=0.288 Sum_probs=40.5
Q ss_pred hcCCCcEEEE-cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCC-cEEEEecCCCCCcHHHHHHHHHHcCCCCCCCE
Q 023853 29 ALTGMDIVII-PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK-AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL 106 (276)
Q Consensus 29 al~daDiVii-~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~-~~vivvtNP~d~~~~v~t~~~~~~~~~~~~rv 106 (276)
.+.++|+|+| |+|...+ |..-+.++-..+....++ -+++|++--.. ..-+..++.++..++...+
T Consensus 251 ~~~~~DlVLIDTaGr~~~-----------~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~~~~~~ 317 (388)
T PRK12723 251 QSKDFDLVLVDTIGKSPK-----------DFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPFSYKTV 317 (388)
T ss_pred HhCCCCEEEEcCCCCCcc-----------CHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCCCCCEE
Confidence 4589999999 6775431 222234444445545444 35566531111 1145677788877776666
Q ss_pred EEEeechH
Q 023853 107 LGVTMLDV 114 (276)
Q Consensus 107 iG~t~lds 114 (276)
| +|-||.
T Consensus 318 I-~TKlDe 324 (388)
T PRK12723 318 I-FTKLDE 324 (388)
T ss_pred E-EEeccC
Confidence 4 366776
No 246
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=23.97 E-value=1.2e+02 Score=27.75 Aligned_cols=65 Identities=14% Similarity=0.094 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhCCCc--EEEEecCCCCCcHHHHHHHHHHcCCCCCCCEEEE-eechHHHHHHHHHHHhCCCC
Q 023853 61 VKTLCEGIAKCCPKA--IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDP 129 (276)
Q Consensus 61 ~~~i~~~i~~~~p~~--~vivvtNP~d~~~~v~t~~~~~~~~~~~~rviG~-t~lds~R~~~~la~~l~v~~ 129 (276)
+-++-.++.-++++. .+|-.||-+| ++--++.+.+-++++-=|-. ....-+|.-+.=+++.+|++
T Consensus 295 MLELLNQLDGFss~~~vKviAATNRvD----iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~ 362 (424)
T KOG0652|consen 295 MLELLNQLDGFSSDDRVKVIAATNRVD----ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSD 362 (424)
T ss_pred HHHHHHhhcCCCCccceEEEeeccccc----ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCC
Confidence 456778888888765 6777799999 55555567666665433444 33334555566778887764
No 247
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=23.91 E-value=60 Score=30.56 Aligned_cols=43 Identities=26% Similarity=0.251 Sum_probs=26.1
Q ss_pred CCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC
Q 023853 23 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP 73 (276)
Q Consensus 23 ~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p 73 (276)
..++++.++|||+||+--| |+|.-...-+.---+++..++|..
T Consensus 275 ~~~le~~v~daDLVITGEG--------r~D~Qs~~GK~pigVA~~Akk~~v 317 (378)
T COG1929 275 ATNLEDAVKDADLVITGEG--------RIDSQSLHGKTPIGVAKLAKKYGV 317 (378)
T ss_pred HhCHHHhhccCCEEEeCCC--------cccccccCCccchHHHHhhhhhCC
Confidence 5689999999999998544 333222222233345666666654
No 248
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=23.89 E-value=2.1e+02 Score=22.24 Aligned_cols=50 Identities=10% Similarity=0.131 Sum_probs=26.6
Q ss_pred HHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 023853 26 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 85 (276)
Q Consensus 26 ~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d 85 (276)
.+..+++||++++...... .+-+ .-++.+...+.++.++..++++.|=.|
T Consensus 69 ~~~~~~~~d~ii~v~d~~~------~~s~----~~~~~~~~~~~~~~~~~p~ilv~nK~D 118 (164)
T cd04101 69 VSNYWESPSVFILVYDVSN------KASF----ENCSRWVNKVRTASKHMPGVLVGNKMD 118 (164)
T ss_pred HHHHhCCCCEEEEEEECcC------HHHH----HHHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 3456777888877654221 1111 123344455555555555566667777
No 249
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=23.51 E-value=55 Score=30.44 Aligned_cols=22 Identities=9% Similarity=0.222 Sum_probs=18.9
Q ss_pred ceecCCCHHhhcCCCcEEEEcC
Q 023853 19 GFLGQQQLEDALTGMDIVIIPA 40 (276)
Q Consensus 19 ~i~~~~d~~~al~daDiVii~a 40 (276)
+++.+.|+++++++||+|....
T Consensus 212 ~~~~~~d~~~a~~~aDvvyt~~ 233 (334)
T PRK12562 212 KITLTEDIAAGVKGADFIYTDV 233 (334)
T ss_pred eEEEEcCHHHHhCCCCEEEEcC
Confidence 3778899999999999988864
No 250
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=23.41 E-value=1.6e+02 Score=26.48 Aligned_cols=69 Identities=17% Similarity=0.232 Sum_probs=38.3
Q ss_pred cCCCcEEEEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHcC
Q 023853 30 LTGMDIVIIPAGVPRK--PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG 99 (276)
Q Consensus 30 l~daDiVii~ag~~~k--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d~~~~v~t~~~~~~~ 99 (276)
-++||++++--|.-.+ .|.....-+..-+..+.++.+..++.+|+.+++..+-|...-- =+.|++++..
T Consensus 168 ~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~-D~~~~l~~t~ 238 (268)
T PF09370_consen 168 EAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPE-DAQYVLRNTK 238 (268)
T ss_dssp HHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHH-HHHHHHHH-T
T ss_pred HcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHH-HHHHHHhcCC
Confidence 4699999995443221 1233333456677888999999999999999999987765311 1445555553
No 251
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=23.32 E-value=65 Score=29.34 Aligned_cols=24 Identities=17% Similarity=0.104 Sum_probs=19.4
Q ss_pred ceecCCCHHhhcCCCcEEEEcCCC
Q 023853 19 GFLGQQQLEDALTGMDIVIIPAGV 42 (276)
Q Consensus 19 ~i~~~~d~~~al~daDiVii~ag~ 42 (276)
++...++.++++++||||+.+...
T Consensus 169 ~v~~~~~~~eav~~aDIV~taT~s 192 (301)
T PRK06407 169 DIRPVDNAEAALRDADTITSITNS 192 (301)
T ss_pred cEEEeCCHHHHHhcCCEEEEecCC
Confidence 366678899999999999986543
No 252
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=23.25 E-value=2.4e+02 Score=24.43 Aligned_cols=55 Identities=24% Similarity=0.230 Sum_probs=38.0
Q ss_pred CHHhhcCCC--cEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEec
Q 023853 25 QLEDALTGM--DIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 81 (276)
Q Consensus 25 d~~~al~da--DiVii~ag~~~k~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvt 81 (276)
+++++++++ |+||.+++..... .......+..|......+++.+.+.+. .++.+|
T Consensus 41 ~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S 99 (287)
T TIGR01214 41 ALERLLRAIRPDAVVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHGA--RLVHIS 99 (287)
T ss_pred HHHHHHHhCCCCEEEECCccccccccccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence 455667766 9999998864322 124566778899889999998887653 345444
No 253
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=23.25 E-value=1.9e+02 Score=29.01 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=47.6
Q ss_pred CCCHHhhcCCC--cEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCC--CcHHHHHHHHHHc
Q 023853 23 QQQLEDALTGM--DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN--STVPIAAEVFKKV 98 (276)
Q Consensus 23 ~~d~~~al~da--DiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d--~~~~v~t~~~~~~ 98 (276)
..++.++++++ |++|=+.+.+ | .+=+++.+.|.+++++.+|.-.|||.. . ...+-+.+.
T Consensus 370 ~~~L~e~v~~~KPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE---~tpeda~~~ 432 (559)
T PTZ00317 370 LKTLEDVVRFVKPTALLGLSGVG---G-----------VFTEEVVKTMASNVERPIIFPLSNPTSKAE---CTAEDAYKW 432 (559)
T ss_pred CCCHHHHHhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCCCCCCC---cCHHHHHhh
Confidence 36899999999 9988665533 2 112467788889999999999999983 2 223333333
Q ss_pred CCCCCCCEEEE-eechH
Q 023853 99 GTYDPKRLLGV-TMLDV 114 (276)
Q Consensus 99 ~~~~~~rviG~-t~lds 114 (276)
+ +-+-+|++ +-.+.
T Consensus 433 T--~Grai~AtGspf~p 447 (559)
T PTZ00317 433 T--NGRAIVASGSPFPP 447 (559)
T ss_pred c--cCCEEEEECCCCCC
Confidence 2 12457887 44443
No 254
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=23.20 E-value=2.2e+02 Score=27.72 Aligned_cols=77 Identities=14% Similarity=0.190 Sum_probs=45.8
Q ss_pred hcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCC--CcHHHHHHHHHHcCCCCCCCE
Q 023853 29 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN--STVPIAAEVFKKVGTYDPKRL 106 (276)
Q Consensus 29 al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d--~~~~v~t~~~~~~~~~~~~rv 106 (276)
.+.++|.||+....++ ...+-..-.++|+|+++ ..+.+.+.--.-+.|-|+--.. +++.+++.++..+ |++|.=+
T Consensus 63 ni~~~~~VV~s~Ai~~-~NpEi~~A~e~~ipi~~-r~e~Laelm~~~~~iaVaGTHGKTTTTsmla~vl~~~-gldPtf~ 139 (459)
T COG0773 63 NILDADVVVVSNAIKE-DNPEIVAALERGIPVIS-RAEMLAELMRFRTSIAVAGTHGKTTTTSMLAWVLEAA-GLDPTFL 139 (459)
T ss_pred HcCCCceEEEecccCC-CCHHHHHHHHcCCCeEc-HHHHHHHHHhCCeeEEEeCCCCchhHHHHHHHHHHhC-CCCCEEE
Confidence 5999999998777662 33344555567777754 3444444432233344433333 4666777766554 6788777
Q ss_pred EE
Q 023853 107 LG 108 (276)
Q Consensus 107 iG 108 (276)
+|
T Consensus 140 iG 141 (459)
T COG0773 140 IG 141 (459)
T ss_pred EC
Confidence 76
No 255
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=23.07 E-value=1.7e+02 Score=25.25 Aligned_cols=31 Identities=6% Similarity=-0.067 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 023853 55 NINAGIVKTLCEGIAKCCPKAIVNLISNPVN 85 (276)
Q Consensus 55 ~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d 85 (276)
..+.+-++++.+.+++.+++..|++-++|.+
T Consensus 150 ~~~~~~~~~~i~~L~~~~~~~~i~vGG~~~~ 180 (213)
T cd02069 150 VPSLDEMVEVAEEMNRRGIKIPLLIGGAATS 180 (213)
T ss_pred hccHHHHHHHHHHHHhcCCCCeEEEEChhcC
Confidence 4567778888888888888778888888877
No 256
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=23.06 E-value=1.3e+02 Score=23.93 Aligned_cols=37 Identities=8% Similarity=0.079 Sum_probs=19.8
Q ss_pred HHHHHHHHcCCCCCCCEEEE----eechHHHHHHHHHHHhCC
Q 023853 90 IAAEVFKKVGTYDPKRLLGV----TMLDVVRANTFVAEVLGL 127 (276)
Q Consensus 90 v~t~~~~~~~~~~~~rviG~----t~lds~R~~~~la~~l~v 127 (276)
.+..++... |+|.++|+-- +..+++++-..+-+..|.
T Consensus 58 ~~~~~l~~~-gvp~~~I~~e~~s~~T~ena~~~~~~~~~~~~ 98 (155)
T PF02698_consen 58 AMRDYLIEL-GVPEERIILEPKSTNTYENARFSKRLLKERGW 98 (155)
T ss_dssp HHHHHHHHT----GGGEEEE----SHHHHHHHHHHHHHT-SS
T ss_pred HHHHHHHhc-ccchheeEccCCCCCHHHHHHHHHHHHHhhcC
Confidence 566666665 8999988644 245666665555555554
No 257
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=23.01 E-value=1.2e+02 Score=27.76 Aligned_cols=42 Identities=24% Similarity=0.313 Sum_probs=27.2
Q ss_pred cceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 023853 18 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAK 70 (276)
Q Consensus 18 ~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~ 70 (276)
-++..++|=.||.++||++|+---. | .....|++++++.|.+
T Consensus 125 aGvkVtsDD~EAv~~aei~I~ftPf----G-------~~q~~Iikkii~~lpE 166 (340)
T TIGR01723 125 LGLKVTTDDREAVEDADIIITWLPK----G-------NKQPDIIKKFIDDIPE 166 (340)
T ss_pred cCceEecCcHHHhcCCCEEEEEcCC----C-------CCchHHHHHHHhhCCC
Confidence 3455655555699999999983211 1 2246788888888754
No 258
>PLN02427 UDP-apiose/xylose synthase
Probab=23.00 E-value=1.8e+02 Score=26.87 Aligned_cols=56 Identities=14% Similarity=-0.013 Sum_probs=36.8
Q ss_pred CHHhhcCCCcEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecC
Q 023853 25 QLEDALTGMDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 82 (276)
Q Consensus 25 d~~~al~daDiVii~ag~~~k~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtN 82 (276)
+++++++++|+||-+|+..... .....+.+..|+.-...+.+..++.+ ..+|.+|.
T Consensus 79 ~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~--~r~v~~SS 136 (386)
T PLN02427 79 RLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN--KRLIHFST 136 (386)
T ss_pred HHHHHhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC--CEEEEEee
Confidence 4567888999999998754211 12334566778777777777777665 35555553
No 259
>PLN02996 fatty acyl-CoA reductase
Probab=22.99 E-value=2.5e+02 Score=27.33 Aligned_cols=45 Identities=22% Similarity=0.155 Sum_probs=34.2
Q ss_pred HHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 023853 26 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC 71 (276)
Q Consensus 26 ~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~ 71 (276)
+++.++++|+||=.|+... ......+....|+.-...+.+.+.+.
T Consensus 106 ~~~l~~~vD~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~~a~~~ 150 (491)
T PLN02996 106 REEMWKEIDIVVNLAATTN-FDERYDVALGINTLGALNVLNFAKKC 150 (491)
T ss_pred HHHHHhCCCEEEECccccC-CcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556789999999887543 33456677888999999998888775
No 260
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=22.98 E-value=2.3e+02 Score=22.43 Aligned_cols=44 Identities=25% Similarity=0.282 Sum_probs=26.1
Q ss_pred CCcEEEEcCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEec
Q 023853 32 GMDIVIIPAGVPRK-PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 81 (276)
Q Consensus 32 daDiVii~ag~~~k-~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvt 81 (276)
+.|+|+|..|.... .+.+ .+.+..| ++++++.+++. ++.+++++
T Consensus 64 ~pd~v~i~~G~ND~~~~~~-~~~~~~~---l~~li~~~~~~--~~~vil~~ 108 (177)
T cd01822 64 KPDLVILELGGNDGLRGIP-PDQTRAN---LRQMIETAQAR--GAPVLLVG 108 (177)
T ss_pred CCCEEEEeccCcccccCCC-HHHHHHH---HHHHHHHHHHC--CCeEEEEe
Confidence 78999998886542 2333 3334444 45666677666 44455554
No 261
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=22.88 E-value=2.3e+02 Score=21.87 Aligned_cols=50 Identities=10% Similarity=0.150 Sum_probs=26.7
Q ss_pred HHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCcEEEEecCCCC
Q 023853 26 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN 85 (276)
Q Consensus 26 ~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~~~vivvtNP~d 85 (276)
....+++||.+|+...... .... ..+..+...+.++. ++.-++++.|-.|
T Consensus 66 ~~~~~~~~d~~ilv~d~~~---~~s~-------~~~~~~l~~~~~~~~~~~pivvv~nK~D 116 (164)
T smart00175 66 TSSYYRGAVGALLVYDITN---RESF-------ENLKNWLKELREYADPNVVIMLVGNKSD 116 (164)
T ss_pred HHHHhCCCCEEEEEEECCC---HHHH-------HHHHHHHHHHHHhCCCCCeEEEEEEchh
Confidence 3446778888887755432 1111 12223444444444 5556667777777
No 262
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=22.86 E-value=2e+02 Score=29.00 Aligned_cols=73 Identities=22% Similarity=0.272 Sum_probs=47.4
Q ss_pred CCCHHhhcCC--CcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCC--CcHHHHHHHHHHc
Q 023853 23 QQQLEDALTG--MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN--STVPIAAEVFKKV 98 (276)
Q Consensus 23 ~~d~~~al~d--aDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d--~~~~v~t~~~~~~ 98 (276)
..++.+++++ +|++|=+.+.+ |- +=+++.+.|.+++++.+|.-.|||.. . ...+-+++.
T Consensus 390 ~~~L~e~v~~vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E---~~pe~a~~~ 452 (581)
T PLN03129 390 GASLLEAVKAIKPTVLIGLSGVG---GT-----------FTKEVLEAMASLNERPIIFALSNPTSKAE---CTAEEAYTW 452 (581)
T ss_pred CCCHHHHHhccCCCEEEEecCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCCCCCcC---cCHHHHHHh
Confidence 4689999999 89988765533 21 22467777888899999999999972 2 233333343
Q ss_pred CCCCCCCEEEE-eechH
Q 023853 99 GTYDPKRLLGV-TMLDV 114 (276)
Q Consensus 99 ~~~~~~rviG~-t~lds 114 (276)
+. .+-+|++ +-.+.
T Consensus 453 T~--G~ai~AtGSPf~p 467 (581)
T PLN03129 453 TG--GRAIFASGSPFDP 467 (581)
T ss_pred hc--CCEEEEeCCCCCC
Confidence 31 2447887 43433
No 263
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=22.79 E-value=1.3e+02 Score=23.54 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=14.3
Q ss_pred HHhhcCCCcEEEEcCCCCC
Q 023853 26 LEDALTGMDIVIIPAGVPR 44 (276)
Q Consensus 26 ~~~al~daDiVii~ag~~~ 44 (276)
++++++.+|+||+++|...
T Consensus 52 i~~~~~~~DlvittGG~g~ 70 (133)
T cd00758 52 LIEASREADLVLTTGGTGV 70 (133)
T ss_pred HHHHHhcCCEEEECCCCCC
Confidence 4456677999999998653
No 264
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=22.77 E-value=1.2e+02 Score=24.14 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=13.4
Q ss_pred hhcCCCcEEEEcCCCCC
Q 023853 28 DALTGMDIVIIPAGVPR 44 (276)
Q Consensus 28 ~al~daDiVii~ag~~~ 44 (276)
++++++|+||+++|...
T Consensus 62 ~~~~~~DliIttGG~g~ 78 (144)
T TIGR00177 62 KAVDEADVVLTTGGTGV 78 (144)
T ss_pred HHHhCCCEEEECCCCCC
Confidence 45678999999998653
No 265
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=22.73 E-value=56 Score=27.37 Aligned_cols=56 Identities=21% Similarity=0.208 Sum_probs=42.1
Q ss_pred CHHhhcCCC--cEEEEcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEec
Q 023853 25 QLEDALTGM--DIVIIPAGVPR--KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 81 (276)
Q Consensus 25 d~~~al~da--DiVii~ag~~~--k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvt 81 (276)
++++.+++. |.|+.+++... .....-.+....|+...+.+...+.+.+. ..++.++
T Consensus 56 ~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~~i~~s 115 (236)
T PF01370_consen 56 QLEKLLEKANIDVVIHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAGV-KRFIFLS 115 (236)
T ss_dssp HHHHHHHHHTESEEEEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEE
T ss_pred cccccccccCceEEEEeeccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 556677777 99999988653 11145678889999999999999999987 4555554
No 266
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=22.69 E-value=2e+02 Score=28.38 Aligned_cols=42 Identities=7% Similarity=0.306 Sum_probs=25.6
Q ss_pred cCCCcEEEE-cCCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHhhCCCcEEEEec
Q 023853 30 LTGMDIVII-PAGVPRKPGMTRDDLFNINAGIVKTL--CEGIAKCCPKAIVNLIS 81 (276)
Q Consensus 30 l~daDiVii-~ag~~~k~g~~r~~~~~~N~~i~~~i--~~~i~~~~p~~~vivvt 81 (276)
..+||+||+ |+++-. ....+.+..+ .+.+++.+|+.+|++.+
T Consensus 101 ~~~ADviiiNTC~V~~----------~Ae~k~~~~i~~l~~~k~~~p~~~i~v~G 145 (509)
T PRK14327 101 TEDADVILLNTCAIRE----------NAENKVFGEIGHLKHLKRENPDLLIGVCG 145 (509)
T ss_pred cCCCCEEEEECCCCcc----------HHHHHHHHHHHHHHHHHhhCCCCEEEEEc
Confidence 347999988 666543 2223333333 24567778998877765
No 267
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=22.56 E-value=2.7e+02 Score=26.71 Aligned_cols=54 Identities=13% Similarity=-0.055 Sum_probs=39.7
Q ss_pred HHhhcCCCcEEEEcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEec
Q 023853 26 LEDALTGMDIVIIPAGVPR--KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 81 (276)
Q Consensus 26 ~~~al~daDiVii~ag~~~--k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvt 81 (276)
.++++.++|+||-+|+... ....+..+.+..|+.....+.+.+++.+. .+|.+|
T Consensus 178 ~~~~~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~--r~V~~S 233 (436)
T PLN02166 178 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--RFLLTS 233 (436)
T ss_pred ccccccCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEEC
Confidence 3445789999999987532 22345678889999999999999998763 555554
No 268
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=22.29 E-value=2.8e+02 Score=22.70 Aligned_cols=18 Identities=11% Similarity=0.075 Sum_probs=13.5
Q ss_pred HHhhcCCCcEEEEcCCCC
Q 023853 26 LEDALTGMDIVIIPAGVP 43 (276)
Q Consensus 26 ~~~al~daDiVii~ag~~ 43 (276)
+++.+++||+|+......
T Consensus 28 l~~~~~~ad~il~VvD~~ 45 (190)
T cd01855 28 LSSISPKKALVVHVVDIF 45 (190)
T ss_pred HHhcccCCcEEEEEEECc
Confidence 456789999999876543
No 269
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.19 E-value=52 Score=29.81 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=25.5
Q ss_pred ccccccccCCcccccce-ecCCCHHhhcCCCcEEEEcCCCC
Q 023853 4 PLAQNKFDVDSRAVRGF-LGQQQLEDALTGMDIVIIPAGVP 43 (276)
Q Consensus 4 ~~~~~~~d~~~~~~~~i-~~~~d~~~al~daDiVii~ag~~ 43 (276)
|+++-+..... .|.-. +.+.++++.+++|||||.+.|.|
T Consensus 174 pia~~L~~~ga-tVtv~~~~t~~L~~~~~~aDIvI~AtG~~ 213 (283)
T PRK14192 174 PMAMMLLNANA-TVTICHSRTQNLPELVKQADIIVGAVGKP 213 (283)
T ss_pred HHHHHHHhCCC-EEEEEeCCchhHHHHhccCCEEEEccCCC
Confidence 55555544333 33322 23668888999999999988744
No 270
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=21.86 E-value=2e+02 Score=24.87 Aligned_cols=68 Identities=21% Similarity=0.221 Sum_probs=38.9
Q ss_pred cccccccCCcccccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 023853 5 LAQNKFDVDSRAVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 84 (276)
Q Consensus 5 ~~~~~~d~~~~~~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~ 84 (276)
+.+++.|++... .+.. -....++++|++++....... ..++.+. +.+.+.+.+++|+.-+++++|=.
T Consensus 49 v~L~iwDt~G~e--~~~~--l~~~~~~~~d~illvfdis~~---~Sf~~i~------~~w~~~~~~~~~~~piiLVgnK~ 115 (222)
T cd04173 49 IELNMWDTSGSS--YYDN--VRPLAYPDSDAVLICFDISRP---ETLDSVL------KKWQGETQEFCPNAKVVLVGCKL 115 (222)
T ss_pred EEEEEEeCCCcH--HHHH--HhHHhccCCCEEEEEEECCCH---HHHHHHH------HHHHHHHHhhCCCCCEEEEEECc
Confidence 446667765431 1111 112357899999998654421 1222121 22334566678888888899999
Q ss_pred C
Q 023853 85 N 85 (276)
Q Consensus 85 d 85 (276)
|
T Consensus 116 D 116 (222)
T cd04173 116 D 116 (222)
T ss_pred c
Confidence 9
No 271
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=21.78 E-value=1.9e+02 Score=24.65 Aligned_cols=47 Identities=23% Similarity=0.286 Sum_probs=29.0
Q ss_pred hcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 023853 29 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 85 (276)
Q Consensus 29 al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d 85 (276)
-++++|.+|+...... +.. +. + +++..+.+.+++++.-+++++|-.|
T Consensus 82 ~~~~~~~~ilvfD~~~-----~~s-~~-~---i~~w~~~i~~~~~~~piilvgNK~D 128 (219)
T PLN03071 82 YYIHGQCAIIMFDVTA-----RLT-YK-N---VPTWHRDLCRVCENIPIVLCGNKVD 128 (219)
T ss_pred HcccccEEEEEEeCCC-----HHH-HH-H---HHHHHHHHHHhCCCCcEEEEEEchh
Confidence 4678888888654332 221 11 2 2345556666677777788889999
No 272
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=21.77 E-value=2.6e+02 Score=21.40 Aligned_cols=39 Identities=18% Similarity=0.022 Sum_probs=27.1
Q ss_pred CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecC
Q 023853 31 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 82 (276)
Q Consensus 31 ~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtN 82 (276)
.+.|+|.++.-.. |...+.++++.+++..|+..+++-+.
T Consensus 38 ~~pdiv~~S~~~~-------------~~~~~~~~~~~ik~~~p~~~iv~GG~ 76 (127)
T cd02068 38 LKPDVVGISLMTS-------------AIYEALELAKIAKEVLPNVIVVVGGP 76 (127)
T ss_pred cCCCEEEEeeccc-------------cHHHHHHHHHHHHHHCCCCEEEECCc
Confidence 5889998875322 23346778888999999877665553
No 273
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=21.68 E-value=44 Score=31.28 Aligned_cols=114 Identities=14% Similarity=0.201 Sum_probs=66.5
Q ss_pred ccccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCCC-cHHHHHH
Q 023853 15 RAVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS-TVPIAAE 93 (276)
Q Consensus 15 ~~~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d~-~~~v~t~ 93 (276)
+....+...+++++.=+|+.++++++... .-.+.+..+.+|+-+.+.++.|++.++|.--|-|. ..|++.
T Consensus 49 ~if~avkiydeL~~~GedveVA~VsG~~~--------~~v~ad~~I~~qld~vl~~~~~~~~i~VsDGaeDE~vlPiIq- 119 (344)
T PF04123_consen 49 AIFGAVKIYDELKAEGEDVEVAVVSGSPD--------VGVEADRKIAEQLDEVLSKFDPDSAIVVSDGAEDERVLPIIQ- 119 (344)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEECCCC--------CchhhHHHHHHHHHHHHHhCCCCEEEEEecChhhhhhhHhhh-
Confidence 34445555666765545666777766421 13466788999999999999999988888778775 444443
Q ss_pred HHHHcCCCCCCCEEEE-e-echHHH--HHHHHHHHhCCCCCCceeeEEeecC
Q 023853 94 VFKKVGTYDPKRLLGV-T-MLDVVR--ANTFVAEVLGLDPREVDVPVVGGHA 141 (276)
Q Consensus 94 ~~~~~~~~~~~rviG~-t-~lds~R--~~~~la~~l~v~~~~v~~~ViG~hg 141 (276)
.+..-...+||+=- . .+++.. +++.+-+.++ +| +.+-+++|=.|
T Consensus 120 --Sr~~V~sV~RVVVkQs~~iEsTYyll~~YlKk~l~-Dp-~~~~~~lGvPG 167 (344)
T PF04123_consen 120 --SRVPVDSVKRVVVKQSRGIESTYYLLGRYLKKALS-DP-EYRRTFLGVPG 167 (344)
T ss_pred --ccCceEEEEEEEEEcCCCcHHHHHHHHHHHHHhhc-Ch-hhhceeecchH
Confidence 23222223455544 2 455532 1233333332 33 35567787553
No 274
>PRK00768 nadE NAD synthetase; Reviewed
Probab=21.66 E-value=3.4e+02 Score=24.39 Aligned_cols=80 Identities=16% Similarity=0.065 Sum_probs=46.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCCC-cHHHHHHHHHHcCC----CCCCCEEEEeec----hHHH
Q 023853 46 PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS-TVPIAAEVFKKVGT----YDPKRLLGVTML----DVVR 116 (276)
Q Consensus 46 ~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d~-~~~v~t~~~~~~~~----~~~~rviG~t~l----ds~R 116 (276)
+.++-..... .++.-+-..+++.+.+++|+-+|.=.|+ ++..++..+...-+ .|..+++|+.+- ++..
T Consensus 14 ~~~~~~~~~~---~i~~~L~~~l~~~g~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~~~~~~~~~l~mP~~~~~~~~ 90 (268)
T PRK00768 14 PTIDPEEEIR---RRVDFLKDYLKKSGLKSLVLGISGGQDSTLAGRLAQLAVEELRAETGDDDYQFIAVRLPYGVQADED 90 (268)
T ss_pred CCCCHHHHHH---HHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHHhcccccCcceeEEEEECCCCCcCCHH
Confidence 4444444443 3445555666677889999999999995 33333332222222 233458888432 2345
Q ss_pred HHHHHHHHhCCC
Q 023853 117 ANTFVAEVLGLD 128 (276)
Q Consensus 117 ~~~~la~~l~v~ 128 (276)
-...+++.+|+.
T Consensus 91 da~~la~~lgi~ 102 (268)
T PRK00768 91 DAQDALAFIQPD 102 (268)
T ss_pred HHHHHHHhcCCC
Confidence 567788999873
No 275
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=21.64 E-value=3.9e+02 Score=24.06 Aligned_cols=70 Identities=19% Similarity=0.281 Sum_probs=39.1
Q ss_pred eecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHcC
Q 023853 20 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG 99 (276)
Q Consensus 20 i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d~~~~v~t~~~~~~~ 99 (276)
+..+++.+ +...+|+||++.-... ....+..+.+. ..+++.++...|=.+ ..- .+.+.
T Consensus 61 ~~~~~~~~-~~~~~D~vilavK~~~------------~~~~~~~l~~~---~~~~~~iv~lqNG~~----~~e-~l~~~- 118 (313)
T PRK06249 61 VQAYRSAE-DMPPCDWVLVGLKTTA------------NALLAPLIPQV---AAPDAKVLLLQNGLG----VEE-QLREI- 118 (313)
T ss_pred ceEEcchh-hcCCCCEEEEEecCCC------------hHhHHHHHhhh---cCCCCEEEEecCCCC----cHH-HHHHH-
Confidence 33444554 5789999999864332 11222222222 247888888888877 322 23333
Q ss_pred CCCCCCEEEE-eec
Q 023853 100 TYDPKRLLGV-TML 112 (276)
Q Consensus 100 ~~~~~rviG~-t~l 112 (276)
+|+.+|++- +..
T Consensus 119 -~~~~~v~~g~~~~ 131 (313)
T PRK06249 119 -LPAEHLLGGLCFI 131 (313)
T ss_pred -CCCCcEEEEeeeE
Confidence 567787654 444
No 276
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=21.56 E-value=2e+02 Score=24.34 Aligned_cols=48 Identities=15% Similarity=0.121 Sum_probs=28.5
Q ss_pred hhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCcEEEEecCCCC
Q 023853 28 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN 85 (276)
Q Consensus 28 ~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~~~vivvtNP~d 85 (276)
.-+++||.+|+...... .+.++.+ ++....+.++. ++.-+++++|=.|
T Consensus 68 ~y~~~ad~iIlVfDvtd---~~Sf~~l-------~~w~~~i~~~~~~~~piilVgNK~D 116 (202)
T cd04120 68 AYYRSAKGIILVYDITK---KETFDDL-------PKWMKMIDKYASEDAELLLVGNKLD 116 (202)
T ss_pred HHhcCCCEEEEEEECcC---HHHHHHH-------HHHHHHHHHhCCCCCcEEEEEECcc
Confidence 35789999999765332 1122222 22333455554 4567788899999
No 277
>PF08899 DUF1844: Domain of unknown function (DUF1844); InterPro: IPR014995 This group of proteins are functionally uncharacterised.
Probab=21.54 E-value=1.2e+02 Score=21.86 Aligned_cols=19 Identities=47% Similarity=0.434 Sum_probs=16.8
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 023853 246 GPLNEYERAGLEKAKKELA 264 (276)
Q Consensus 246 ~~L~~~E~~~l~~sa~~i~ 264 (276)
++|+++|++.|+.+.-.||
T Consensus 53 GNL~~~E~~lL~~~L~eLR 71 (74)
T PF08899_consen 53 GNLDEEEERLLESALYELR 71 (74)
T ss_pred cCCCHHHHHHHHHHHHHHh
Confidence 4899999999999888876
No 278
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=21.48 E-value=63 Score=29.99 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=18.4
Q ss_pred ceecCCCHHhhcCCCcEEEEc
Q 023853 19 GFLGQQQLEDALTGMDIVIIP 39 (276)
Q Consensus 19 ~i~~~~d~~~al~daDiVii~ 39 (276)
+++.++|+++++++||+|...
T Consensus 211 ~~~~~~d~~ea~~~aDvvyt~ 231 (331)
T PRK02102 211 KITITEDPEEAVKGADVIYTD 231 (331)
T ss_pred eEEEEcCHHHHhCCCCEEEEc
Confidence 377789999999999999884
No 279
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=21.41 E-value=1.7e+02 Score=24.20 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=23.7
Q ss_pred EEeEEEcCCceEEEccCCCCCHHHHHHHHH
Q 023853 229 ASKVRLGRAGIEEIYSLGPLNEYERAGLEK 258 (276)
Q Consensus 229 s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~ 258 (276)
|.=++++|+|..+-+..+.|+++|.++.-+
T Consensus 126 SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~ 155 (160)
T PF09695_consen 126 SAIIVLDKQGKVQFVKEGALSPAEVQQVIA 155 (160)
T ss_pred ceEEEEcCCccEEEEECCCCCHHHHHHHHH
Confidence 445689999988877778999999877644
No 280
>PRK06823 ornithine cyclodeaminase; Validated
Probab=21.32 E-value=79 Score=29.04 Aligned_cols=23 Identities=0% Similarity=0.081 Sum_probs=18.7
Q ss_pred ceecCCCHHhhcCCCcEEEEcCC
Q 023853 19 GFLGQQQLEDALTGMDIVIIPAG 41 (276)
Q Consensus 19 ~i~~~~d~~~al~daDiVii~ag 41 (276)
.+....+.++++++||||+.+.+
T Consensus 179 ~v~~~~~~~~av~~ADIV~taT~ 201 (315)
T PRK06823 179 AVNTTLDAAEVAHAANLIVTTTP 201 (315)
T ss_pred cEEEECCHHHHhcCCCEEEEecC
Confidence 35567889999999999998654
No 281
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=21.26 E-value=65 Score=30.26 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=18.6
Q ss_pred ceecCCCHHhhcCCCcEEEEc
Q 023853 19 GFLGQQQLEDALTGMDIVIIP 39 (276)
Q Consensus 19 ~i~~~~d~~~al~daDiVii~ 39 (276)
++..++|++++++|||+|...
T Consensus 232 ~~~~~~d~~ea~~~aDvvyt~ 252 (357)
T TIGR03316 232 KFNIVNSMDEAFKDADIVYPK 252 (357)
T ss_pred eEEEEcCHHHHhCCCCEEEEC
Confidence 466789999999999999986
No 282
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.21 E-value=1.9e+02 Score=23.16 Aligned_cols=49 Identities=20% Similarity=0.239 Sum_probs=28.7
Q ss_pred CCCcEEEEcCCCCCCC-C---CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecC
Q 023853 31 TGMDIVIIPAGVPRKP-G---MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 82 (276)
Q Consensus 31 ~daDiVii~ag~~~k~-g---~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtN 82 (276)
...|+|++..|...-. + ..-.+.+..| +++++..+++..|+..|++++.
T Consensus 60 ~~~d~v~l~~G~ND~~~~~~~~~~~~~~~~~---l~~~v~~~~~~~~~~~ii~~~p 112 (191)
T cd01834 60 AKPDVVSIMFGINDSFRGFDDPVGLEKFKTN---LRRLIDRLKNKESAPRIVLVSP 112 (191)
T ss_pred CCCCEEEEEeecchHhhcccccccHHHHHHH---HHHHHHHHHcccCCCcEEEECC
Confidence 3479999988754211 1 1223334444 5566777766667777666653
No 283
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=21.10 E-value=74 Score=28.23 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=23.5
Q ss_pred cccceecCCCHHhhcCCCcEEEEcCCCCC
Q 023853 16 AVRGFLGQQQLEDALTGMDIVIIPAGVPR 44 (276)
Q Consensus 16 ~~~~i~~~~d~~~al~daDiVii~ag~~~ 44 (276)
.|.+....+++++|++|+|+|+-|.+.++
T Consensus 56 ile~A~i~~tL~eAl~d~~~v~aTtar~r 84 (242)
T COG0565 56 ILENAKIVDTLEEALADCDLVVATTARSR 84 (242)
T ss_pred hhccCeeecCHHHHhcCCCEEEEeccccC
Confidence 34556678899999999999999886554
No 284
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=21.03 E-value=1.6e+02 Score=27.87 Aligned_cols=100 Identities=14% Similarity=0.164 Sum_probs=61.2
Q ss_pred eecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCcEEEEecCCCCCcHHHHHHHHHHc
Q 023853 20 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKV 98 (276)
Q Consensus 20 i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~~~vivvtNP~d~~~~v~t~~~~~~ 98 (276)
...+.|+. .++++|.||= -...|++...++...|.+.+ |++++-..|.-.|.. .++. .
T Consensus 58 L~~~~Dy~-~~~~~dmvie--------------av~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~--~isa----~ 116 (380)
T KOG1683|consen 58 LVETLDYT-GFANADMVIE--------------AVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDIN--VISA----G 116 (380)
T ss_pred cccccccc-cccccceecc--------------chhhhHHHHHHHHHHHHhhcCCcceeeeccccCChH--HHhh----c
Confidence 44688997 7999999822 23568888899999999998 567765555444411 3331 1
Q ss_pred CCCCCCCEEEE-ee--chHHHHHH----------HHHHHhCCCCCCce-eeEEeecC
Q 023853 99 GTYDPKRLLGV-TM--LDVVRANT----------FVAEVLGLDPREVD-VPVVGGHA 141 (276)
Q Consensus 99 ~~~~~~rviG~-t~--lds~R~~~----------~la~~l~v~~~~v~-~~ViG~hg 141 (276)
+ =.+++++|+ -. .+-+++.. -+|..+++...-=. ..|+|++-
T Consensus 117 l-d~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~ 172 (380)
T KOG1683|consen 117 L-DRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSPAGKLPVVVGNCC 172 (380)
T ss_pred c-CchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccccCCccEEeccCC
Confidence 2 225799998 43 33345543 33444444433222 46788774
No 285
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=21.02 E-value=65 Score=29.89 Aligned_cols=21 Identities=10% Similarity=0.347 Sum_probs=18.5
Q ss_pred eecCCCHHhhcCCCcEEEEcC
Q 023853 20 FLGQQQLEDALTGMDIVIIPA 40 (276)
Q Consensus 20 i~~~~d~~~al~daDiVii~a 40 (276)
++.++|+++++++||+|....
T Consensus 212 ~~~~~d~~ea~~~aDvvy~~~ 232 (332)
T PRK04284 212 ITITDDIDEGVKGSDVIYTDV 232 (332)
T ss_pred EEEEcCHHHHhCCCCEEEECC
Confidence 677899999999999998853
No 286
>PRK08818 prephenate dehydrogenase; Provisional
Probab=20.96 E-value=1.8e+02 Score=27.39 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=9.2
Q ss_pred CHHhhcCCCcEEEEcC
Q 023853 25 QLEDALTGMDIVIIPA 40 (276)
Q Consensus 25 d~~~al~daDiVii~a 40 (276)
++++.+++||+||++.
T Consensus 44 ~~~~~v~~aDlVilav 59 (370)
T PRK08818 44 DPATLLQRADVLIFSA 59 (370)
T ss_pred CHHHHhcCCCEEEEeC
Confidence 4455566666666643
No 287
>PLN02688 pyrroline-5-carboxylate reductase
Probab=20.93 E-value=2.3e+02 Score=24.68 Aligned_cols=17 Identities=18% Similarity=0.219 Sum_probs=7.2
Q ss_pred ChhHHHHHHHHHhcCcc
Q 023853 159 TPTEIDYLTDRIQNGGT 175 (276)
Q Consensus 159 ~~~~~~~i~~~v~~~~~ 175 (276)
+++.++.+.+-+..-|.
T Consensus 137 ~~~~~~~v~~l~~~~G~ 153 (266)
T PLN02688 137 TADDRDLVATLFGAVGK 153 (266)
T ss_pred CHHHHHHHHHHHHhCCC
Confidence 34444444444444443
No 288
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=20.89 E-value=3.6e+02 Score=24.27 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=18.7
Q ss_pred ccceecCCCHHhhcCCCcEEEEc
Q 023853 17 VRGFLGQQQLEDALTGMDIVIIP 39 (276)
Q Consensus 17 ~~~i~~~~d~~~al~daDiVii~ 39 (276)
..++....+.+++++++|+||+.
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~i~p 61 (287)
T TIGR02853 39 FTGAVKCELLELDLTTLDVVILP 61 (287)
T ss_pred cccceeecchhhhhccCCEEEEC
Confidence 44677777888889999999995
No 289
>PRK08655 prephenate dehydrogenase; Provisional
Probab=20.71 E-value=4.8e+02 Score=25.06 Aligned_cols=20 Identities=35% Similarity=0.250 Sum_probs=15.4
Q ss_pred ecCCCHHhhcCCCcEEEEcC
Q 023853 21 LGQQQLEDALTGMDIVIIPA 40 (276)
Q Consensus 21 ~~~~d~~~al~daDiVii~a 40 (276)
..++++++++.+||+||++.
T Consensus 47 ~~~~~~~e~~~~aDvVIlav 66 (437)
T PRK08655 47 EYANDNIDAAKDADIVIISV 66 (437)
T ss_pred eeccCHHHHhccCCEEEEec
Confidence 34567777888999998875
No 290
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=20.70 E-value=67 Score=29.82 Aligned_cols=21 Identities=19% Similarity=0.340 Sum_probs=18.3
Q ss_pred ceecCCCHHhhcCCCcEEEEc
Q 023853 19 GFLGQQQLEDALTGMDIVIIP 39 (276)
Q Consensus 19 ~i~~~~d~~~al~daDiVii~ 39 (276)
+++.++|+++++++||+|...
T Consensus 212 ~~~~~~d~~~a~~~aDvVyt~ 232 (334)
T PRK01713 212 RITVTDDIDKAVKGVDFVHTD 232 (334)
T ss_pred eEEEEcCHHHHhCCCCEEEEc
Confidence 367789999999999999885
No 291
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=20.65 E-value=68 Score=29.84 Aligned_cols=22 Identities=9% Similarity=0.290 Sum_probs=19.0
Q ss_pred ceecCCCHHhhcCCCcEEEEcC
Q 023853 19 GFLGQQQLEDALTGMDIVIIPA 40 (276)
Q Consensus 19 ~i~~~~d~~~al~daDiVii~a 40 (276)
+|+.++|+++++++||+|....
T Consensus 212 ~i~~~~d~~ea~~~aDvvytd~ 233 (336)
T PRK03515 212 NITLTEDIAEGVKGADFIYTDV 233 (336)
T ss_pred eEEEEcCHHHHhCCCCEEEecC
Confidence 4778899999999999988863
No 292
>PRK07589 ornithine cyclodeaminase; Validated
Probab=20.62 E-value=78 Score=29.56 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=19.0
Q ss_pred ceecCCCHHhhcCCCcEEEEcCC
Q 023853 19 GFLGQQQLEDALTGMDIVIIPAG 41 (276)
Q Consensus 19 ~i~~~~d~~~al~daDiVii~ag 41 (276)
++...++.++++++||||+.+..
T Consensus 180 ~v~~~~~~~~av~~ADIIvtaT~ 202 (346)
T PRK07589 180 RIVACRSVAEAVEGADIITTVTA 202 (346)
T ss_pred cEEEeCCHHHHHhcCCEEEEecC
Confidence 36667899999999999998654
No 293
>PRK07574 formate dehydrogenase; Provisional
Probab=20.58 E-value=1.9e+02 Score=27.39 Aligned_cols=47 Identities=11% Similarity=0.172 Sum_probs=29.2
Q ss_pred cCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEec
Q 023853 22 GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 81 (276)
Q Consensus 22 ~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvt 81 (276)
...++++.++.||+|++..... .+...++ | .+.+....+.+++|+++
T Consensus 238 ~~~~l~ell~~aDvV~l~lPlt----~~T~~li--~-------~~~l~~mk~ga~lIN~a 284 (385)
T PRK07574 238 YHVSFDSLVSVCDVVTIHCPLH----PETEHLF--D-------ADVLSRMKRGSYLVNTA 284 (385)
T ss_pred ecCCHHHHhhcCCEEEEcCCCC----HHHHHHh--C-------HHHHhcCCCCcEEEECC
Confidence 3457999999999999975321 1112222 2 23344455778999885
No 294
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=20.58 E-value=68 Score=30.96 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=19.4
Q ss_pred ceecCCCHHhhcCCCcEEEEcCC
Q 023853 19 GFLGQQQLEDALTGMDIVIIPAG 41 (276)
Q Consensus 19 ~i~~~~d~~~al~daDiVii~ag 41 (276)
+|+.++|++++++|||+|..+.+
T Consensus 295 ~v~~~~d~~eav~~ADVVYt~~~ 317 (429)
T PRK11891 295 VIEQTDDLAAGLRGADVVYATRI 317 (429)
T ss_pred eEEEEcCHHHHhCCCCEEEEcCc
Confidence 36778999999999999998553
No 295
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=20.40 E-value=3.7e+02 Score=19.96 Aligned_cols=70 Identities=14% Similarity=0.136 Sum_probs=35.8
Q ss_pred HHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHcCCCCCCCEEEE-e-echHHHHHHHHHHHhCCCCCCceeeEEeec
Q 023853 63 TLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-T-MLDVVRANTFVAEVLGLDPREVDVPVVGGH 140 (276)
Q Consensus 63 ~i~~~i~~~~p~~~vivvtNP~d~~~~v~t~~~~~~~~~~~~rviG~-t-~lds~R~~~~la~~l~v~~~~v~~~ViG~h 140 (276)
-++..+++.+.+..++-...+.+ -+.+.+.+. +-+++|+ + ...+...-..+++..+-...++...+=|.|
T Consensus 19 ~la~~l~~~G~~v~~~d~~~~~~----~l~~~~~~~----~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 19 YLAAYLRKAGHEVDILDANVPPE----ELVEALRAE----RPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp HHHHHHHHTTBEEEEEESSB-HH----HHHHHHHHT----TCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred HHHHHHHHCCCeEEEECCCCCHH----HHHHHHhcC----CCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 35566666667666554433334 333333332 2267888 4 455554445556665444444555444444
No 296
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=20.34 E-value=2.4e+02 Score=25.05 Aligned_cols=48 Identities=23% Similarity=0.135 Sum_probs=27.3
Q ss_pred cCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCcEEEEecCCCC
Q 023853 22 GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN 85 (276)
Q Consensus 22 ~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~~~vivvtNP~d 85 (276)
.+.|.++.+++||+||++.. | ..++++.+.+..+- ++..+|.+.|-.+
T Consensus 54 ~~~~~~e~~~~aDvVilavp-p---------------~~~~~vl~~l~~~l~~~~~ivS~~aGi~ 102 (277)
T PRK06928 54 LADNEAEIFTKCDHSFICVP-P---------------LAVLPLLKDCAPVLTPDRHVVSIAAGVS 102 (277)
T ss_pred EeCCHHHHHhhCCEEEEecC-H---------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 35566667788888887653 1 22334444454433 3446666666555
No 297
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=20.14 E-value=3.6e+02 Score=21.61 Aligned_cols=51 Identities=20% Similarity=0.159 Sum_probs=28.6
Q ss_pred CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 023853 31 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 85 (276)
Q Consensus 31 ~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d 85 (276)
...|+|++..|....-.....+.+.+| ++++++.+++.+.. +|++...|..
T Consensus 58 ~~~d~v~i~~G~ND~~~~~~~~~~~~~---~~~li~~~~~~~~~-~il~~~~p~~ 108 (183)
T cd04501 58 LKPAVVIIMGGTNDIIVNTSLEMIKDN---IRSMVELAEANGIK-VILASPLPVD 108 (183)
T ss_pred cCCCEEEEEeccCccccCCCHHHHHHH---HHHHHHHHHHCCCc-EEEEeCCCcC
Confidence 468999998776532211233344444 55677777665332 3444456665
No 298
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=20.09 E-value=2.8e+02 Score=26.76 Aligned_cols=44 Identities=14% Similarity=0.245 Sum_probs=32.7
Q ss_pred hcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 023853 29 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 85 (276)
Q Consensus 29 al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP~d 85 (276)
..++.|+|.+++..+ +.+...++++.+++..|+..|++-+..+.
T Consensus 65 ~~~~~Dlv~is~~t~-------------~~~~~~~ia~~iK~~~p~~~vv~GG~h~t 108 (472)
T TIGR03471 65 IAKDYDLVVLHTSTP-------------SFPSDVKTAEALKEQNPATKIGFVGAHVA 108 (472)
T ss_pred HhcCCCEEEEECCCc-------------chHHHHHHHHHHHHhCCCCEEEEECCCcc
Confidence 467899999987544 24456778999999999998777765444
No 299
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=20.02 E-value=71 Score=29.69 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=18.9
Q ss_pred ceecCCCHHhhcCCCcEEEEcC
Q 023853 19 GFLGQQQLEDALTGMDIVIIPA 40 (276)
Q Consensus 19 ~i~~~~d~~~al~daDiVii~a 40 (276)
+++.++|+++++++||+|....
T Consensus 231 ~~~~~~d~~ea~~~aDvvy~~~ 252 (335)
T PRK04523 231 SLTVSHDIDSAYAGADVVYAKS 252 (335)
T ss_pred eEEEEcCHHHHhCCCCEEEece
Confidence 4777899999999999988854
No 300
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=20.02 E-value=1.8e+02 Score=23.86 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=24.2
Q ss_pred HhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 023853 27 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 78 (276)
Q Consensus 27 ~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vi 78 (276)
.+-++.||+|+++ +-|++... .-+..+.+.+++.+|++.|+
T Consensus 137 ~~Qi~~ADvIvln----------K~D~~~~~-~~i~~~~~~ir~lnp~a~Iv 177 (178)
T PF02492_consen 137 REQIAFADVIVLN----------KIDLVSDE-QKIERVREMIRELNPKAPIV 177 (178)
T ss_dssp HHHHCT-SEEEEE-----------GGGHHHH---HHHHHHHHHHH-TTSEEE
T ss_pred hhcchhcCEEEEe----------ccccCChh-hHHHHHHHHHHHHCCCCEEe
Confidence 3457888888885 33333333 33467778888888988664
Done!