RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 023853
(276 letters)
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome,
NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A
{Citrullus lanatus} PDB: 1sev_A
Length = 326
Score = 413 bits (1065), Expect = e-147
Identities = 235/260 (90%), Positives = 245/260 (94%)
Query: 17 VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 76
VRGFLGQQQLE ALTGMD++I+PAGVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AI
Sbjct: 61 VRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAI 120
Query: 77 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV 136
VNLISNPVNSTVPIAAEVFKK GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPV
Sbjct: 121 VNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 180
Query: 137 VGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAA 196
VGGHAGVTILPLLSQVKP S T EI YLTDRIQNGGTEVVEAK GAGSATLSMAYAA
Sbjct: 181 VGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAV 240
Query: 197 KFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 256
KFADACLRGLRGDAGVIECA+V+S VTELPFFASKVRLGR GIEE+YSLGPLNEYER GL
Sbjct: 241 KFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGL 300
Query: 257 EKAKKELAGSIQKGVSFVRK 276
EKAKKELAGSI+KGVSF+R
Sbjct: 301 EKAKKELAGSIEKGVSFIRS 320
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT;
1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Length = 314
Score = 405 bits (1042), Expect = e-143
Identities = 143/259 (55%), Positives = 186/259 (71%)
Query: 17 VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 76
V+G+LG +QL D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL A+ CP A+
Sbjct: 53 VKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAM 112
Query: 77 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV 136
+ +ISNPVNST+PI AEVFKK G Y+P ++ GVT LD+VRAN FVAE+ GLDP V VPV
Sbjct: 113 ICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPV 172
Query: 137 VGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAA 196
+GGHAG TI+PL+SQ P ++ LT RIQ GTEVV+AK GAGSATLSMAYA A
Sbjct: 173 IGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGA 232
Query: 197 KFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 256
+F + + + G GV+EC++V S T+ P+F++ + LG+ GIE+ +G ++ +E +
Sbjct: 233 RFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMI 292
Query: 257 EKAKKELAGSIQKGVSFVR 275
+A EL SI+KG FV+
Sbjct: 293 AEAIPELKASIKKGEEFVK 311
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.45A
{Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A*
1ib6_A* 1ie3_A* 4e0b_A*
Length = 312
Score = 400 bits (1029), Expect = e-141
Identities = 145/260 (55%), Positives = 180/260 (69%), Gaps = 2/260 (0%)
Query: 17 VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 76
++GF G+ AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA
Sbjct: 55 IKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKAC 113
Query: 77 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV 136
+ +I+NPVN+TV IAAEV KK G YD +L GVT LD++R+NTFVAE+ G P EV+VPV
Sbjct: 114 IGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPV 173
Query: 137 VGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAA 196
+GGH+GVTILPLLSQV P S T E+ LT RIQN GTEVVEAK G GSATLSM AAA
Sbjct: 174 IGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAA 232
Query: 197 KFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 256
+F + +R L+G+ GV+ECAYV FF+ + LG+ G+EE S+G L+ +E+ L
Sbjct: 233 RFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNAL 292
Query: 257 EKAKKELAGSIQKGVSFVRK 276
E L I G FV K
Sbjct: 293 EGMLDTLKKDIALGEEFVNK 312
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2,
protein structur initiative; 1.90A {Porphyromonas
gingivalis}
Length = 343
Score = 155 bits (393), Expect = 2e-45
Identities = 61/254 (24%), Positives = 100/254 (39%), Gaps = 21/254 (8%)
Query: 27 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI-VNLISNPVN 85
++ALT ++ G PRK GMTR+DL NA I L + I CP V +I NP +
Sbjct: 71 KEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPAD 130
Query: 86 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVT 144
T + P ++ + LD R + +A+ G+ V GGH G
Sbjct: 131 ITGLVTL----IYSGLKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGH-GEQ 185
Query: 145 ILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYA 194
+ L+ + + LT + L R+ GG +++ + S+ S +Y
Sbjct: 186 MAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRG--RSSFQSPSYV 243
Query: 195 AAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERA 254
+ + A + G YV E A + + + G++ NE ERA
Sbjct: 244 SIEMIRAAMGGEAFR--WPAGCYVNVPGFEHIMMAMETTITKDGVKHSDINQLGNEAERA 301
Query: 255 GLEKAKKELAGSIQ 268
L+++ LA
Sbjct: 302 ALKESYSHLAKLRD 315
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 139 bits (354), Expect = 5e-40
Identities = 62/261 (23%), Positives = 111/261 (42%), Gaps = 41/261 (15%)
Query: 28 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST 87
+ + G DIV++ AG+ RKPGMTR+ L NA + L E I AIV + +NPV+
Sbjct: 63 EDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVD-- 120
Query: 88 VPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL 146
V K + +R++G +LD R ++++ LG+ + V+ V+G H G +
Sbjct: 121 --AMTYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMH-GQKMF 177
Query: 147 PLLSQVKPSCS-----LTPTEIDYLTDRIQNGGTEVVEAKTGA-----GSATLSMAYAAA 196
P+ ++ EI+ + N G ++ E + + + + A
Sbjct: 178 PVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELRGYSSNYGPAAGLVLTVEAIK 237
Query: 197 KFAD--------ACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPL 248
+ D L+G G + +P +G++GIE I L PL
Sbjct: 238 R--DSKRIYPYSLYLQGEYGYNDI----VAE-----VP-----AVIGKSGIERIIEL-PL 280
Query: 249 NEYERAGLEKAKKELAGSIQK 269
E E+ ++A + + ++
Sbjct: 281 TEDEKRKFDEAVQAVKKLVET 301
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 137 bits (347), Expect = 7e-39
Identities = 81/254 (31%), Positives = 130/254 (51%), Gaps = 26/254 (10%)
Query: 28 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST 87
DIVII AG+PRKPGMTR+DL NAGIVK + + I K I+ ++SNP++
Sbjct: 65 ADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLD-- 122
Query: 88 VPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL 146
I V +R++G+ +LD R +F+A LG+ ++++ V+GGH G ++
Sbjct: 123 --IMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGH-GDAMV 179
Query: 147 PLLSQV----KPSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 201
P++ P L P E ID L +R +NGG E+VE GSA + A + + ++
Sbjct: 180 PVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHL-KQGSAFYAPASSVVEMVES 238
Query: 202 CLRGLRGDAGVIECA------YVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAG 255
+ + V+ CA Y F V+LGR G+E+IY + L++ +
Sbjct: 239 IVLDRKR---VLPCAVGLEGQYGIDKT----FVGVPVKLGRNGVEQIYEI-NLDQADLDL 290
Query: 256 LEKAKKELAGSIQK 269
L+K+ K + + +
Sbjct: 291 LQKSAKIVDENCKM 304
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 137 bits (347), Expect = 7e-39
Identities = 68/254 (26%), Positives = 120/254 (47%), Gaps = 27/254 (10%)
Query: 28 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST 87
D+ II AG+PR PGM+RDDL N IV + E + P + + +++NP++
Sbjct: 65 GPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLD-- 122
Query: 88 VPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL 146
+ V + + R++G+ +LD R +F+AE L + R+V ++GGH G T++
Sbjct: 123 --VMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGGH-GDTMV 179
Query: 147 PLLSQV----KPSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 201
PL P L I+ + +R + G E+V+ SA + AAA+ +A
Sbjct: 180 PLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM--GTSAWYAPGAAAAEMTEA 237
Query: 202 CLRGLRGDAGVIECA------YVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAG 255
L+ + ++ CA Y + F V+LG G+EE+ + L+ E+A
Sbjct: 238 ILKDNK---RILPCAAYCDGEYGLDDL----FIGVPVKLGAGGVEEVIEV-DLDADEKAQ 289
Query: 256 LEKAKKELAGSIQK 269
L+ + + ++
Sbjct: 290 LKTSAGHVHSNLDD 303
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 136 bits (345), Expect = 1e-38
Identities = 70/254 (27%), Positives = 120/254 (47%), Gaps = 26/254 (10%)
Query: 28 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST 87
D++++ +G PRKPGM+R+DL +NA I + A P A++ +++NP++
Sbjct: 66 ADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLD-- 123
Query: 88 VPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL 146
+ +V + +R++G +LD R TF+A G+ +V ++GGH G ++
Sbjct: 124 --AMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGH-GDEMV 180
Query: 147 PLLSQV----KPSCSL-TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 201
PL P P + + +R + GG E+V GSA + A A A+ +A
Sbjct: 181 PLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTGSAYYAPAAATAQMVEA 239
Query: 202 CLRGLRGDAGVIECA------YVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAG 255
L+ + V+ A Y + + +F V LG G+E+I L PLNE E A
Sbjct: 240 VLKDKK---RVMPVAAYLTGQYGLNDI----YFGVPVILGAGGVEKILEL-PLNEEEMAL 291
Query: 256 LEKAKKELAGSIQK 269
L + K + ++
Sbjct: 292 LNASAKAVRATLDT 305
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 136 bits (345), Expect = 2e-38
Identities = 69/259 (26%), Positives = 119/259 (45%), Gaps = 31/259 (11%)
Query: 28 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST 87
++G D+VII A +P +P R +L NA I+ ++ EG+ K CP A V I+NP++
Sbjct: 68 ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLD-- 125
Query: 88 VPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL 146
+ F+KV ++ G+ +LD R TF+A+ G++ +V V+GGH G ++
Sbjct: 126 --VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGH-GDGMV 182
Query: 147 PL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAA 196
P LS +T +ID + + EV + G+A + A AA
Sbjct: 183 PATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KTGTAYFAPAAAAV 241
Query: 197 KFADACLRGLRGDAGVIECA------YVASTVTELPFFASKVRLGRAGIEEIYSLGPLNE 250
K A+A L+ + V+ C+ Y + + +G+ G+E+I L L
Sbjct: 242 KMAEAYLKDKK---AVVPCSAFCSNHYGVKGI----YMGVPTIIGKNGVEDILEL-DLTP 293
Query: 251 YERAGLEKAKKELAGSIQK 269
E+ L ++ E+ +
Sbjct: 294 LEQKLLGESINEVNTISKV 312
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious
diseases, csgid dehydrogenase, oxidoreductase, citric
acid cycle; 1.70A {Bacillus anthracis}
Length = 315
Score = 136 bits (344), Expect = 2e-38
Identities = 73/254 (28%), Positives = 124/254 (48%), Gaps = 26/254 (10%)
Query: 28 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST 87
D+V+I AG+ RKPGM+RDDL N+ I+K++ IAK P AI+ +++NPV+
Sbjct: 74 ADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVD-- 131
Query: 88 VPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL 146
K + +R++G +LD R TF+A+ L L +++ V+GGH G ++
Sbjct: 132 --AMTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVLGGH-GDDMV 188
Query: 147 PLLSQV----KPSCSL-TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 201
PL+ P +L ++ + +R + GG E+V G GSA + A + + +A
Sbjct: 189 PLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVG-LLGNGSAYYAPAASLVEMTEA 247
Query: 202 CLRGLRGDAGVIECA------YVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAG 255
L+ R V+ Y S + + V LG GIE+I L L E+
Sbjct: 248 ILKDQR---RVLPAIAYLEGEYGYSDL----YLGVPVILGGNGIEKIIEL-ELLADEKEA 299
Query: 256 LEKAKKELAGSIQK 269
L+++ + + ++
Sbjct: 300 LDRSVESVRNVMKV 313
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent
interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula
marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A*
2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Length = 303
Score = 135 bits (343), Expect = 2e-38
Identities = 61/248 (24%), Positives = 104/248 (41%), Gaps = 26/248 (10%)
Query: 32 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA 91
G D+V+I AG+PR+PG TR DL NA I++ + + + I SNPV+ +
Sbjct: 70 GSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LL 125
Query: 92 AEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLS 150
+ G ++++G LD R ++E + V+ ++G H G +P+ S
Sbjct: 126 NRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFS 184
Query: 151 QVKPSC---SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLR 207
+V + E + L +Q +V+E K G+ A A +A L
Sbjct: 185 KVSVDGTDPEFSGDEKEQLLGDLQESAMDVIERK---GATEWGPARGVAHMVEAILHDTG 241
Query: 208 GDAGVIECA------YVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKK 261
V+ + + F V LG G+EEI L++YE+ + A +
Sbjct: 242 E---VLPASVKLEGEFGHEDT----AFGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAE 293
Query: 262 ELAGSIQK 269
+L+ K
Sbjct: 294 KLSDQYDK 301
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Length = 313
Score = 136 bits (344), Expect = 2e-38
Identities = 63/256 (24%), Positives = 110/256 (42%), Gaps = 38/256 (14%)
Query: 32 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA 91
D+VII +GVPRK GM+R DL NA IV + IA+ C I +I+NPV+ +
Sbjct: 74 ESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-VITNPVD----VM 128
Query: 92 AEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLS 150
++ ++ G+ T LD +R +A+ G+ EV ++G H G +++PLLS
Sbjct: 129 TYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRIIGEH-GDSMVPLLS 187
Query: 151 QVKPS-------CSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACL 203
ID + + ++ G +++ K G + A A +
Sbjct: 188 ATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLK---GGSEFGPAAAILNVVRCIV 244
Query: 204 RG----------LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYER 253
+ G+ I + +P V++GR GIEE+ S+ L++ E
Sbjct: 245 NNEKRLLTLSAYVDGEFDGIRDVCIG-----VP-----VKIGRDGIEEVVSI-ELDKDEI 293
Query: 254 AGLEKAKKELAGSIQK 269
K+ + + ++
Sbjct: 294 IAFRKSAEIIKKYCEE 309
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 136 bits (344), Expect = 2e-38
Identities = 78/259 (30%), Positives = 126/259 (48%), Gaps = 31/259 (11%)
Query: 28 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST 87
+ L D+VII AGVPRKP MTR DL +NA IV ++ E + K CP A V I+NP++
Sbjct: 78 EYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLD-- 135
Query: 88 VPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL 146
FK+ ++ G+ +LD R ++ LG+ P +V VVGGH G ++
Sbjct: 136 --AMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVGGH-GDEMI 192
Query: 147 PL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAA 196
PL LS +T ++I+ + + GG E+VE GSA + A +A
Sbjct: 193 PLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELL-KTGSAFYAPAASAV 251
Query: 197 KFADACLRGLRGDAGVIECA------YVASTVTELPFFASKVRLGRAGIEEIYSLGPLNE 250
A A L+ + V+ C+ Y + + F V +G+ GIE++ + L++
Sbjct: 252 AMAQAYLKDSK---SVLVCSTYLTGQYNVNNL----FVGVPVVIGKNGIEDVVIV-NLSD 303
Query: 251 YERAGLEKAKKELAGSIQK 269
E++ K+ + + +Q
Sbjct: 304 DEKSLFSKSVESIQNLVQD 322
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 134 bits (339), Expect = 1e-37
Identities = 72/259 (27%), Positives = 126/259 (48%), Gaps = 31/259 (11%)
Query: 28 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST 87
A+ G D+VI+ AGVPRKPGM+RDDL IN +++ + GI K P+A V I+NP++
Sbjct: 71 AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLD-- 128
Query: 88 VPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL 146
+K +++G+ +LD R F++E + +V V V+GGH G +++
Sbjct: 129 --AMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVLGGH-GDSMV 185
Query: 147 PL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAA 196
PL L + + ++D + R ++GG E+V GSA + A +A
Sbjct: 186 PLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL-KTGSAFYAPAASAI 244
Query: 197 KFADACLRGLRGDAGVIECA------YVASTVTELPFFASKVRLGRAGIEEIYSLGPLNE 250
+ A++ L+ + V+ A Y + + +G G+E I + L++
Sbjct: 245 QMAESYLKDKK---RVLPVAAQLSGQYGVKDM----YVGVPTVIGANGVERIIEI-DLDK 296
Query: 251 YERAGLEKAKKELAGSIQK 269
E+A +K+ +AG +
Sbjct: 297 DEKAQFDKSVASVAGLCEA 315
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 133 bits (337), Expect = 2e-37
Identities = 75/264 (28%), Positives = 124/264 (46%), Gaps = 40/264 (15%)
Query: 28 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST 87
L D+VI+ AGVPRKPGM+RDDL IN +++T+ EGI CP A V I+NP++
Sbjct: 69 KDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPLD-- 126
Query: 88 VPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL 146
I + +K +++G+ +LD R TF+A+ L + ++V V+GGH G T++
Sbjct: 127 --IMVNMLQKFSGVPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVMGGH-GDTMV 183
Query: 147 PL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAA 196
PL L Q+ L +D + R ++GG E+V GSA + A A
Sbjct: 184 PLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KTGSAYYAPAAAGI 242
Query: 197 KFADACLRGLR-----------GDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSL 245
+ A++ L+ + G G+ E +V +P + G+ I
Sbjct: 243 QMAESFLKDKKMILPCAAKVKAGMYGLDEDLFVG-----VP-----TEISANGVRPIEV- 291
Query: 246 GPLNEYERAGLEKAKKELAGSIQK 269
+++ ER L+ + + +
Sbjct: 292 -EISDKEREQLQVSINAIKDLNKA 314
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 130 bits (330), Expect = 2e-36
Identities = 67/264 (25%), Positives = 123/264 (46%), Gaps = 38/264 (14%)
Query: 28 DALTGMDIVIIPAGVPRKPGMT-----RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 82
D L G D+VI+ AG + PG + RDDL +N I+ + I K CP A + +++N
Sbjct: 68 DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTN 127
Query: 83 PVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHA 141
PV+ + ++ + +++G+ +LD R ++++ L + PR+V+ +VG H
Sbjct: 128 PVD----VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAH- 182
Query: 142 GVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 191
G ++ L L + + ++ E++ + DR N E+V S ++
Sbjct: 183 GNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLH---ASPYVAP 239
Query: 192 AYAAAKFADACLRGLRGDAGVIECA------YVASTVTELPFFASKVRLGRAGIEEIYSL 245
A A + A++ L+ L+ V+ C+ Y S + F + V LG G+E++ L
Sbjct: 240 AAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDI----FGGTPVVLGANGVEQVIEL 292
Query: 246 GPLNEYERAGLEKAKKELAGSIQK 269
LN E+A ++A E
Sbjct: 293 -QLNSEEKAKFDEAIAETKRMKAL 315
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 130 bits (330), Expect = 2e-36
Identities = 51/263 (19%), Positives = 103/263 (39%), Gaps = 42/263 (15%)
Query: 32 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA 91
D+V+I AG +KPG TR DL + N I +++ E + + + + +NPV+ I
Sbjct: 74 DADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD----IL 129
Query: 92 AEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH--------AG 142
K +R++G T+LD R + E + P+ V ++G H +
Sbjct: 130 TYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQ 189
Query: 143 VTI--LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFAD 200
I +P+ V+ +++ + +++ +++E K G+ +A A+
Sbjct: 190 AYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK---GATYYGIAMGLARVTR 246
Query: 201 ACLRGLRGDAGVIECAYVASTVTE-----------LPFFASKVRLGRAGIEEIYSLGPLN 249
A L ++ S + +P + R GI E+ + LN
Sbjct: 247 AILHNEN---AILTV----SAYLDGLYGERDVYIGVP-----AVINRNGIREVIEI-ELN 293
Query: 250 EYERAGLEKAKKELAGSIQKGVS 272
+ E+ + L + + +
Sbjct: 294 DDEKNRFHHSAATLKSVLARAFT 316
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 130 bits (330), Expect = 3e-36
Identities = 71/283 (25%), Positives = 124/283 (43%), Gaps = 40/283 (14%)
Query: 13 DSRAVRGF----LGQQQLEDALTGMDIVIIPAGVPRKPGM-----TRDDLFNINAGIVKT 63
+V + E ALTG D VI+ AG+ + PG +R+DL N+ I++
Sbjct: 55 HVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIRE 114
Query: 64 LCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVA 122
+ + I K CPK + +++NP++ +V + + G+ MLD R +VA
Sbjct: 115 IGQNIKKYCPKTFIIVVTNPLD----CMVKVMCEASGVPTNMICGMACMLDSGRFRRYVA 170
Query: 123 EVLGLDPREVDVPVVGGHAGVTILPLLSQVK----------PSCSLTPTEIDYLTDRIQN 172
+ L + PR+V V+G H G ++PL+ + +T +++ + + +
Sbjct: 171 DALSVSPRDVQATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKV 229
Query: 173 GGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA------YVASTVTELP 226
G E+V G GSA + A +A A + L + VI C+ Y +
Sbjct: 230 SGGEIVRFL-GQGSAYYAPAASAVAMATSFLNDEK---RVIPCSVYCNGEYGLKDM---- 281
Query: 227 FFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQK 269
F +G AGIE + L LNE E+ +K+ ++ +
Sbjct: 282 FIGLPAVIGGAGIERVIEL-ELNEEEKKQFQKSVDDVMALNKA 323
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 130 bits (329), Expect = 4e-36
Identities = 60/263 (22%), Positives = 111/263 (42%), Gaps = 42/263 (15%)
Query: 32 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA 91
D+V+I AG P+KPG TR DL N N I+K++ + I I + +NPV+ I
Sbjct: 76 DADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----IL 131
Query: 92 AEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH--------AG 142
K+ + R++G T LD R +AE++ +D R V ++G H +
Sbjct: 132 TYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEHGDTEFPVWSH 191
Query: 143 VTI--LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFAD 200
I + + VK + ++ + + +++ E+++ K G+ +A A A+ +
Sbjct: 192 ANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLK---GATFYGIATALARISK 248
Query: 201 ACLRGLRGDAGVIECAYVASTVTE-----------LPFFASKVRLGRAGIEEIYSLGPLN 249
A L V+ S + P + R GI+ I + PL
Sbjct: 249 AILNDEN---AVLPL----SVYMDGQYGLNDIYIGTP-----AVINRNGIQNILEI-PLT 295
Query: 250 EYERAGLEKAKKELAGSIQKGVS 272
++E ++K+ +L + +
Sbjct: 296 DHEEESMQKSASQLKKVLTDAFA 318
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 129 bits (328), Expect = 5e-36
Identities = 55/263 (20%), Positives = 103/263 (39%), Gaps = 43/263 (16%)
Query: 32 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA 91
D+V+I AG P+KPG +R DL N N I+ ++ + + I + +NPV+ I
Sbjct: 72 DADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVD----IL 127
Query: 92 AEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLS 150
K + +R++G T LD R + + +DPR VD ++G H G + S
Sbjct: 128 TYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIMGEH-GDSEFAAYS 186
Query: 151 QVK----------PSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFAD 200
++ ++ L D ++N +++ K G+ + A + +
Sbjct: 187 TATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLK---GATFYGIGTALMRISK 243
Query: 201 ACLRGLRGDAGVIECAYVASTVTE-----------LPFFASKVRLGRAGIEEIYSLGPLN 249
A LR V+ + P +G G+++I PL+
Sbjct: 244 AILRDEN---AVLPV----GAYMDGQYGLNDIYIGTP-----AIIGGTGLKQIIES-PLS 290
Query: 250 EYERAGLEKAKKELAGSIQKGVS 272
E ++ + L + G++
Sbjct: 291 ADELKKMQDSAATLKKVLNDGLA 313
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 129 bits (328), Expect = 6e-36
Identities = 59/263 (22%), Positives = 101/263 (38%), Gaps = 42/263 (15%)
Query: 32 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA 91
DIV I AG +KPG TR +L N I K + + I + +NPV+ I
Sbjct: 73 DADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVD----IL 128
Query: 92 AEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH--------AG 142
K +R++G T LD R ++E G P+ V ++G H +
Sbjct: 129 TYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEHGDTELPVWSH 188
Query: 143 VTI--LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFAD 200
+ +P+ V+ + + E+D + D ++N ++E K G+ +A + A+
Sbjct: 189 ANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK---GATYYGVAMSLARITK 245
Query: 201 ACLRGLRGDAGVIECAYVASTVTE-----------LPFFASKVRLGRAGIEEIYSLGPLN 249
A L ++ ST + +P + R GI I L LN
Sbjct: 246 AILHNEN---SILTV----STYLDGQYGADDVYIGVP-----AVVNRGGIAGITEL-NLN 292
Query: 250 EYERAGLEKAKKELAGSIQKGVS 272
E E+ + L ++ +
Sbjct: 293 EKEKEQFLHSAGVLKNILKPHFA 315
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability; HET:
FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 129 bits (326), Expect = 9e-36
Identities = 72/260 (27%), Positives = 117/260 (45%), Gaps = 42/260 (16%)
Query: 32 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA 91
G D+VI+ AGVP+KPG TR L NA ++K + ++K P +IV +++NPV+ +
Sbjct: 67 GSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD----VL 122
Query: 92 AEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH--------AG 142
F K DP+++ G T+LD R T +A+ G PR V V V+G H +G
Sbjct: 123 TYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVWSG 182
Query: 143 VTI--LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFAD 200
I +PL + + ++ ++ + E++E K G+ ++A A A +
Sbjct: 183 AMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERK---GATHYAIALAVADIVE 239
Query: 201 ACLRGLRGDAGVIECAYVASTVTE-----------LPFFASKVRLGRAGIEEIYSLGPLN 249
+ + V+ S E +P V LG+ G+E I L LN
Sbjct: 240 SIFFDEK---RVLTL----SVYLEDYLGVKDLCISVP-----VTLGKHGVERILEL-NLN 286
Query: 250 EYERAGLEKAKKELAGSIQK 269
E E K+ L +I +
Sbjct: 287 EEELEAFRKSASILKNAINE 306
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 127 bits (323), Expect = 2e-35
Identities = 61/260 (23%), Positives = 107/260 (41%), Gaps = 43/260 (16%)
Query: 32 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA 91
D+V+I AG +KPG TR DL + N I K++ + I + +NPV+ I
Sbjct: 74 DADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVD----IL 129
Query: 92 AEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLS 150
A K +R++G T+LD R ++E + PR VD ++G H G T LP+ S
Sbjct: 130 AYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH-GDTELPVWS 188
Query: 151 QVK----------PSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFAD 200
+I+ + + ++ ++++AK G+ +A A+ +
Sbjct: 189 HANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK---GATYYGVAMGLARITE 245
Query: 201 ACLRGLRGDAGVIECAYVASTVTE-----------LPFFASKVRLGRAGIEEIYSLGPLN 249
A R V+ S + E +P + R GI + + PLN
Sbjct: 246 AIFRNED---AVLTV----SALLEGEYEEEDVYIGVP-----AVINRNGIRNVVEI-PLN 292
Query: 250 EYERAGLEKAKKELAGSIQK 269
+ E++ + K L + +
Sbjct: 293 DEEQSKFAHSAKTLKDIMAE 312
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex,
fragment-based LEAD genera inhibitors; HET: 52C; 1.75A
{Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A*
4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A*
4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A*
5ldh_A* 1ldm_A* ...
Length = 331
Score = 128 bits (323), Expect = 4e-35
Identities = 61/265 (23%), Positives = 113/265 (42%), Gaps = 43/265 (16%)
Query: 32 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA 91
+VII AG ++ G +R +L N I K + + K P+ + ++SNPV+ I
Sbjct: 87 NSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVD----IL 142
Query: 92 AEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLS 150
V K+ + R++G LD R + E LG+ P V+G H G + +P+ S
Sbjct: 143 TYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEH-GDSSVPVWS 201
Query: 151 QV------------KPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKF 198
V + + + ++ + EV++ K G + ++ + A
Sbjct: 202 GVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLK---GYTSWAIGLSVADL 258
Query: 199 ADACLRG----------LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPL 248
A++ ++ ++G G+ E +++ +P LG+ GI ++ + L
Sbjct: 259 AESIMKNLRRVHPISTMIKGLYGIKEDVFLS-----VP-----CILGQNGISDVVKV-TL 307
Query: 249 NEYERAGLEKAKKELAGSIQKGVSF 273
E A L+K+ L G IQK + F
Sbjct: 308 TPDEEARLKKSADTLWG-IQKELQF 331
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 126 bits (319), Expect = 8e-35
Identities = 58/262 (22%), Positives = 105/262 (40%), Gaps = 45/262 (17%)
Query: 32 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA 91
G V++ AGV ++PG TR L + NA + + + + P+A++ + +NPV+ +
Sbjct: 67 GARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD----VM 122
Query: 92 AEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLS 150
+V + P R++G T+LD R +AE L + P+ V V+G H G + + + S
Sbjct: 123 TQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEH-GDSEVLVWS 181
Query: 151 QV------------KPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKF 198
+L+P + + + ++ ++E K G+ + A+
Sbjct: 182 SAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGK---GATYYGIGAGLARL 238
Query: 199 ADACLRGLRGDAGVIECAYVASTVTE-----------LPFFASKVRLGRAGIEEIYSLGP 247
A L + GV S T LP LG G+
Sbjct: 239 VRAILTDEK---GVYTV----SAFTPEVAGVLEVSLSLP-----RILGAGGVAGTVYP-S 285
Query: 248 LNEYERAGLEKAKKELAGSIQK 269
L+ ERA L ++ + L +
Sbjct: 286 LSPEERAALRRSAEILKEAAFA 307
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 126 bits (319), Expect = 9e-35
Identities = 54/263 (20%), Positives = 106/263 (40%), Gaps = 46/263 (17%)
Query: 32 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA 91
D+V+I AG +KPG +R +L I+K + + K P AI LI+NPV+ IA
Sbjct: 75 DADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD----IA 130
Query: 92 AEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLS 150
V +K+ ++ G T LD R +A+ G++ + V + G H G + +PL
Sbjct: 131 THVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIAGEH-GDSEVPLWE 189
Query: 151 QV-------------KPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAK 197
L + + + ++N +++ K G+ ++ +
Sbjct: 190 SATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIINGK---GATNYAIGMSGVD 246
Query: 198 FADACLRGLRGDAGVIECAYVASTVTE-----------LPFFASKVRLGRAGIEEIYSLG 246
+A L ++ S++ + +P L R G+ +
Sbjct: 247 IIEAVLHDTN---RILPV----SSMLKDFHGISDICMSVP-----TLLNRQGVNNTINT- 293
Query: 247 PLNEYERAGLEKAKKELAGSIQK 269
P+++ E A L+++ + L + +
Sbjct: 294 PVSDKELAALKRSAETLKETAAQ 316
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 125 bits (316), Expect = 2e-34
Identities = 52/263 (19%), Positives = 103/263 (39%), Gaps = 47/263 (17%)
Query: 32 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA 91
D++++ AG RKPG TR DL N I K + + I K ++ ++SNPV+ I
Sbjct: 74 DCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVD----II 129
Query: 92 AEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH---------- 140
+ +K +++G T+LD +R ++E LG+D + V ++G H
Sbjct: 130 TYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGDSQLPLWSC 189
Query: 141 ---AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAK 197
AG I + K + + + + + ++ G +++ K G+ +A +
Sbjct: 190 THIAGKNINEYIDDPKCNFT--EEDKKKIAEDVKTAGATIIKNK---GATYYGIAVSINT 244
Query: 198 FADACLRGLRGDAGVIECAYVASTVTE-----------LPFFASKVRLGRAGIEEIYSLG 246
+ L+ + TV LP + G++E+
Sbjct: 245 IVETLLKNQN---TIRTV----GTVINGMYGIEDVAISLP-----SIVNSEGVQEVLQF- 291
Query: 247 PLNEYERAGLEKAKKELAGSIQK 269
L E L + +++ + +
Sbjct: 292 NLTPEEEEALRFSAEQVKKVLNE 314
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD;
2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Length = 333
Score = 124 bits (313), Expect = 8e-34
Identities = 55/254 (21%), Positives = 97/254 (38%), Gaps = 25/254 (9%)
Query: 27 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI-VNLISNPVN 85
E A +D+ I+ +PR+ GM R DL N I K + K K++ V ++ NP N
Sbjct: 74 EIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPAN 133
Query: 86 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 145
+ A+ K + + +T LD RA +A LG+ +V ++ G+ T
Sbjct: 134 TNCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQ 190
Query: 146 LPLLSQV----KPSCSLTPTEI-------DYLTDRIQNGGTEVVEAKTGAGSATLSMAYA 194
P ++ + + +Q G V++A+ SA +S A A
Sbjct: 191 YPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKAR-KLSSA-MSAAKA 248
Query: 195 AAKFADACLRGLRGDAGVIECAYVAST-----VTELPFFASKVRLGRAGIEEIYSLGPLN 249
G G + S V + ++ V + + + L P+N
Sbjct: 249 ICDHVRDIWFG--TPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGL-PIN 305
Query: 250 EYERAGLEKAKKEL 263
++ R ++ KEL
Sbjct: 306 DFSREKMDLTAKEL 319
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 120 bits (304), Expect = 1e-32
Identities = 58/258 (22%), Positives = 100/258 (38%), Gaps = 35/258 (13%)
Query: 28 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST 87
L +VI+ AG +KPG +R DL NA I + L I + P A++ + SNPV+
Sbjct: 63 SELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVD-- 120
Query: 88 VPIAAEVFKKVGTYDPK-RLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH----- 140
+ ++ ++ P ++G T+LD R +A+ G+D V+G H
Sbjct: 121 --LLTDLATQL---APGQPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVLGEHGDSEV 175
Query: 141 --------AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMA 192
AG+ + + + + +N ++E K + +
Sbjct: 176 LAWSSAMVAGMPVADFMQAQNL--PWNEQVRAKIDEGTRNAAASIIEGK---RATYYGIG 230
Query: 193 YAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASK-VRLGRAGIEEIYSLGPLNEY 251
A A+ +A LR R V++ E S +GR G+ L
Sbjct: 231 AALARITEAVLRDRR------AVLTVSAPTPEYGVSLSLPRVVGRQGVLSTLHP-KLTGD 283
Query: 252 ERAGLEKAKKELAGSIQK 269
E+ LE++ L G Q+
Sbjct: 284 EQQKLEQSAGVLRGFKQQ 301
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex,
oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus}
SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A*
1bdm_A* 1wze_A* 1wzi_A*
Length = 327
Score = 121 bits (305), Expect = 1e-32
Identities = 60/248 (24%), Positives = 95/248 (38%), Gaps = 19/248 (7%)
Query: 27 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI-VNLISNPVN 85
+ A D ++ PRK GM R DL +N I +A+ K + V ++ NP N
Sbjct: 75 KVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPAN 134
Query: 86 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 145
+ IA K +P+ +T LD RA +A+ G + V G+ T+
Sbjct: 135 TNALIAY---KNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTM 191
Query: 146 LPLLSQV----KPSCSLTPTE--IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFA 199
P L +P+ L E + G +++A+ GA SA S A AA +
Sbjct: 192 FPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR-GASSA-ASAANAAIEHI 249
Query: 200 DACLRGLRGDAGVIECAYVAST----VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAG 255
G G V S + E ++ V + G + +NE+ R
Sbjct: 250 RDWALG--TPEGDWVSMAVPSQGEYGIPEGIVYSFPVT-AKDGAYRVVEGLEINEFARKR 306
Query: 256 LEKAKKEL 263
+E +EL
Sbjct: 307 MEITAQEL 314
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase
(NADP+), activated by LIG chloroplastic malate
dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5
d.162.1.1 PDB: 1civ_A*
Length = 375
Score = 119 bits (301), Expect = 8e-32
Identities = 52/250 (20%), Positives = 90/250 (36%), Gaps = 20/250 (8%)
Query: 27 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI-VNLISNPVN 85
+ +D ++ PR PGM R L +IN I + + K + V ++ NP N
Sbjct: 103 YEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN 162
Query: 86 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 145
+ I K K +T LD RA +A G+ +V + G+ T
Sbjct: 163 TNALICL---KNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQ 219
Query: 146 LPLLSQVKPSCSLTPTEI-------DYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKF 198
+P K I + T +Q G +++ G SA S A + A
Sbjct: 220 VPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW-GRSSA-ASTAVSIADA 277
Query: 199 ADACLRGLRGDAGVIECAYVAST-----VTELPFFASKVRLGRAGIEEIYSLGPLNEYER 253
+ + G V +T + E F+ R G E+ + +++
Sbjct: 278 IKSLVTP--TPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLW 335
Query: 254 AGLEKAKKEL 263
++K++ EL
Sbjct: 336 ERIKKSEAEL 345
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET:
ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 117 bits (297), Expect = 9e-32
Identities = 51/251 (20%), Positives = 102/251 (40%), Gaps = 41/251 (16%)
Query: 32 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA 91
G +I+++ AG+ RKPGMTR DL + NAGI+K + + I + P++ + +++NP++ +
Sbjct: 69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMD----VM 124
Query: 92 AEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLS 150
+ K + G+ LD R + + ++G H G ++ S
Sbjct: 125 TYIMWKESGKPRNEVFGMGNQLDSQRLKERLYNAGARNI--RRAWIIGEH-GDSMFVAKS 181
Query: 151 QV----KPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGL 206
+ + + + + ++ EV++ K G+ A A + A +
Sbjct: 182 LADFDGEV-------DWEAVENDVRFVAAEVIKRK---GATIFGPAVAIYRMVKAVVEDT 231
Query: 207 RGDAGVIECA------YVASTVTELPFFASKVRLGRAGIE--EIYSLGPLNEYERAGLEK 258
+I + Y V +LG+ G E +I L++ E L
Sbjct: 232 G---EIIPTSMILQGEYGIENV----AVGVPAKLGKNGAEVADI----KLSDEEIEKLRN 280
Query: 259 AKKELAGSIQK 269
+ K L +++
Sbjct: 281 SAKILRERLEE 291
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A
{Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB:
1b8u_A* 1b8v_A* 3d5t_A
Length = 329
Score = 118 bits (297), Expect = 2e-31
Identities = 53/266 (19%), Positives = 87/266 (32%), Gaps = 21/266 (7%)
Query: 10 FDVDSRAVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIA 69
D + G A D+ ++ PR PGM R DL NA I + I
Sbjct: 61 DDCAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAID 120
Query: 70 KCCPK-AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLD 128
+ V ++ NP N+ IA K + K + LD RA + +A G
Sbjct: 121 AVASRNIKVLVVGNPANTNAYIAM---KSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKP 177
Query: 129 PREVDVPVVGGHAGVTILPLLSQV----KPSCSLTPTE---IDYLTDRIQNGGTEVVEAK 181
++ V G+ T+ + + D + G +++A+
Sbjct: 178 VSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR 237
Query: 182 TGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAST----VTELPFFASKVRLGRA 237
G SA A AA D + G AG + S + E F V
Sbjct: 238 -GVSSA----ASAANAAIDHIHDWVLGTAGKWTTMGIPSDGSYGIPEGVIFGFPVTTENG 292
Query: 238 GIEEIYSLGPLNEYERAGLEKAKKEL 263
+ + L ++ + + + EL
Sbjct: 293 EYKIVQGL-SIDAFSQERINVTLNEL 317
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 116 bits (293), Expect = 4e-31
Identities = 42/250 (16%), Positives = 81/250 (32%), Gaps = 38/250 (15%)
Query: 32 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA 91
+VI + D+ N + + L + +++ + S P V I
Sbjct: 77 HSKVVIFTVN-SLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQP----VEIM 131
Query: 92 AEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLS 150
V K+ T+ R++G+ LD R + VL +V V+G G + S
Sbjct: 132 TYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQ-GEDKVLTWS 190
Query: 151 QVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRG----- 205
++ N E++ K G + S+ + A D+ +
Sbjct: 191 GQ------EEVVSHTSQVQLSNRAMELLRVK---GQRSWSVGLSVADMVDSIVNNKKKVH 241
Query: 206 -----LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYE-RAGLEKA 259
+G + +++ LP LG G+ E+ L E L+ +
Sbjct: 242 SVSALAKGYYDINSEVFLS-----LP-----CILGTNGVSEVIKT-TLKEDTVTEKLQSS 290
Query: 260 KKELAGSIQK 269
+ Q+
Sbjct: 291 ASSIHSLQQQ 300
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD;
2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 115 bits (291), Expect = 9e-31
Identities = 56/263 (21%), Positives = 104/263 (39%), Gaps = 44/263 (16%)
Query: 28 DALTGMDIVIIPAGVPR----KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 83
AL D+VI G + P R + +V+++ + + ++ +ISNP
Sbjct: 65 AALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNP 124
Query: 84 VNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 142
V+ + +F+ V + +++G T+LD R V E LDPR V +G H G
Sbjct: 125 VD----VITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVSGYNLGEH-G 179
Query: 143 VTILPLLSQV----KPSCSLTPT---EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAA 195
+ S V +P +L ++ + + + GG V+ K G + +A +A
Sbjct: 180 NSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGK---GYTSYGVATSA 236
Query: 196 AKFADACLR---------GLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLG 246
+ A A + R D G+ Y++ P +GR G+ +L
Sbjct: 237 IRIAKAVMADAHAELVVSNRRDDMGM----YLS-----YP-----AIIGRDGVLAETTL- 281
Query: 247 PLNEYERAGLEKAKKELAGSIQK 269
L E+ L +++ + +
Sbjct: 282 DLTTDEQEKLLQSRDYIQQRFDE 304
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 113 bits (286), Expect = 6e-30
Identities = 51/259 (19%), Positives = 87/259 (33%), Gaps = 34/259 (13%)
Query: 32 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA 91
G +V+I AG ++ G +R +L N I K + I K P + L
Sbjct: 89 GSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPELGT----DK 144
Query: 92 AEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLS 150
+ K+ R++G LD R + E LG+ V V+G H G ++ + S
Sbjct: 145 NKQDWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCLVIGWVIGQH-GDSVPSVWS 203
Query: 151 QVKPSCSLTPT-----EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRG 205
+ + E+ L VV + + A A ++
Sbjct: 204 GMWDAKLHKDVVDSAYEVIKLKGYTSWAIGLVVSNPVDVLTYVAWKGCSVADLAQTIMKD 263
Query: 206 ----------LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLG-PLNEYERA 254
++ G+ + +++ LP L GI + L E
Sbjct: 264 LCRVHPVSTMVKDFYGIKDNVFLS-----LP-----CVLNN-GISHCNIVKMKLKPDEEQ 312
Query: 255 GLEKAKKELAGSIQKGVSF 273
L+K+ L IQK + F
Sbjct: 313 QLQKSATTLW-DIQKDLKF 330
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.7 bits (118), Expect = 5e-07
Identities = 59/288 (20%), Positives = 94/288 (32%), Gaps = 112/288 (38%)
Query: 52 DLFNINAGIVKTLCEGIA--------------KCCPKA--IVNLISNPVNSTVP-----I 90
DL+ +V L + A K + I+ + NP S P +
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP--SNTPDKDYLL 232
Query: 91 AAEV-FKKVGTYDPKRLLGVTMLDVVRANTFV-AEVLGLDPREVDVPVVG--GH-AGV-- 143
+ + P L+GV L A+ V A++LG P E+ + G GH G+
Sbjct: 233 SIPISC-------P--LIGVIQL----AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 144 ------------------TILPLL-------SQVKPSCSLTPTEIDYLTDRIQNGGTEVV 178
+ +L + P+ SL P+ L D ++N
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI---LEDSLEN------ 330
Query: 179 EAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRL---- 234
G + M + L + ++ YV T + LP +V +
Sbjct: 331 ----NEGVPS-PM---------LSISNLTQEQ--VQ-DYVNKTNSHLP-AGKQVEISLVN 372
Query: 235 GR-----AGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSF-VRK 276
G +G + SL LN L KAK +G Q + F RK
Sbjct: 373 GAKNLVVSGPPQ--SLYGLNLT----LRKAKAP-SGLDQSRIPFSERK 413
Score = 39.3 bits (91), Expect = 0.001
Identities = 32/227 (14%), Positives = 62/227 (27%), Gaps = 102/227 (44%)
Query: 45 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKA----IVNLI-SNPVNSTV----------- 88
+ GM D L+ + + + I++++ +NPVN T+
Sbjct: 1628 EQGMGMD-LYK-TSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 89 ---------------PIAAEVFKKVG------TY-DPKRLLGVTMLDVVRANT----FVA 122
++FK++ T+ K LL T T +
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT------QFTQPALTLM 1739
Query: 123 EVL--------GLDPREVDVPVVGGH-----------AGV----TILPLLSQ-------- 151
E GL P + GH A V +++ ++
Sbjct: 1740 EKAAFEDLKSKGLIPADA---TFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVA 1796
Query: 152 ---------------VKPS---CSLTPTEIDYLTDRIQNGGTEVVEA 180
+ P S + + Y+ +R+ +VE
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI 1843
Score = 35.0 bits (80), Expect = 0.025
Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 50/141 (35%)
Query: 154 PSCSLTPTE-----IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRG--- 205
P+ TP E + Y++ ++ +K G L++ F + L G
Sbjct: 54 PT---TPAELVGKFLGYVSSLVE-------PSKVGQFDQVLNLCLTE--FENCYLEGNDI 101
Query: 206 ------LRGDAG--------VIECAYVASTVTELPFF-ASKVRLGRA---GIEEIYSL-- 245
L + +I+ A + + PF S L RA G ++ ++
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Query: 246 --GPLNEYERAGLEKAKKELA 264
G ++Y E EL
Sbjct: 162 GQGNTDDY----FE----ELR 174
Score = 34.6 bits (79), Expect = 0.034
Identities = 29/140 (20%), Positives = 43/140 (30%), Gaps = 41/140 (29%)
Query: 166 LTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKF---ADACLRG---------------LR 207
+ D + N + G + Y+A F D L+ R
Sbjct: 1661 ILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 208 GDAGVI---ECAYVASTVTELPFFASKVRLGRAGIEEIY------SLGPLNEYERAGLEK 258
+ G++ + A T+ E F L G+ SLG EY A L
Sbjct: 1721 SEKGLLSATQFTQPALTLMEKAAFE---DLKSKGLIPADATFAGHSLG---EY--AALA- 1771
Query: 259 AKKELAG--SIQKGVSFVRK 276
+ LA SI+ V V
Sbjct: 1772 S---LADVMSIESLVEVVFY 1788
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown
function, glycosidase, hydrolase, manganese,
metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}
Length = 450
Score = 44.3 bits (104), Expect = 2e-05
Identities = 24/137 (17%), Positives = 46/137 (33%), Gaps = 22/137 (16%)
Query: 26 LEDALTGMDIVIIPAGV------------PRKPGMTRDDLFNINAG----------IVKT 63
L+ AL+ DIVII P + G+ + + G I
Sbjct: 69 LKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAE 128
Query: 64 LCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAE 123
+ I P++ V +NP++ + +VF + + T + T
Sbjct: 129 IARAIRDYAPESWVINYTNPMSVCTRVLYKVFPGIKAIGCCHEVFGTQKLLAEMVTERLG 188
Query: 124 VLGLDPREVDVPVVGGH 140
+ ++ V V+G +
Sbjct: 189 IEVPRREDIRVNVLGIN 205
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+,
maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga
maritima} SCOP: c.2.1.5 d.162.1.2
Length = 480
Score = 42.9 bits (100), Expect = 6e-05
Identities = 26/139 (18%), Positives = 38/139 (27%), Gaps = 35/139 (25%)
Query: 26 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGI------------------------- 60
L+D + D VI A V + + G
Sbjct: 71 LDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLK 130
Query: 61 -VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANT 119
+ I K PKA +NP+ V P + +G
Sbjct: 131 YFVDIARKIEKLSPKAWYLQAANPI-FEGTTL------VTRTVPIKAVGFC--HGHYGVM 181
Query: 120 FVAEVLGLDPREVDVPVVG 138
+ E LGL+ +VD V G
Sbjct: 182 EIVEKLGLEEEKVDWQVAG 200
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein
structure initiative, MCSG glucosidase, NAD-dependent;
HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5
d.162.1.2
Length = 472
Score = 41.7 bits (97), Expect = 2e-04
Identities = 24/154 (15%), Positives = 50/154 (32%), Gaps = 30/154 (19%)
Query: 20 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGI------------------- 60
F E+A T +D V+ V + D+ + G+
Sbjct: 90 FAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIG 149
Query: 61 -VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANT 119
V + + + K P A + SNP + ++L + + V
Sbjct: 150 GVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPNS------KILNICDM-PVGIED 202
Query: 120 FVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 153
+A++LGL R+ + + G+ + ++
Sbjct: 203 RMAQILGLSSRKE---MKVRYYGLNHFGWWTSIQ 233
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI,
protein structure initi midwest center for structural
genomics; 2.31A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.2
Length = 450
Score = 39.0 bits (90), Expect = 0.001
Identities = 30/171 (17%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 26 LEDALTGMDIVIIPAGV------------PRKPGMTRDDLFNI--------NAGIVKTLC 65
AL G D V V P K G+ + ++ +
Sbjct: 77 RRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDII 136
Query: 66 EGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVL 125
+ + CP A + +NP K+ +++G+ + + VA++L
Sbjct: 137 RDMEELCPDAWLINFTNPAGMVTEAVLRYTKQE------KVVGLCNV-PIGMRMGVAKLL 189
Query: 126 GLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTE 176
G+D V + G + V L + +T ID + ++G T
Sbjct: 190 GVDADRVHIDFAGLNHMVFGLHVYLDGV---EVTEKVIDLVAHPDRSGVTM 237
>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na
dependent; HET: G6P NAD; 2.4A {Thermotoga maritima}
SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A
Length = 417
Score = 33.2 bits (75), Expect = 0.079
Identities = 17/133 (12%), Positives = 36/133 (27%), Gaps = 28/133 (21%)
Query: 26 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGI----------------- 68
E A+ VI G D+ + G++ G+
Sbjct: 67 FEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYV 126
Query: 69 --AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDV-VRANTFVAEVL 125
+ A + +NP + + +G + +V + +AE+
Sbjct: 127 DTVRKTSNATIVNFTNPSGHITEFVRNYLEYE------KFIG--LCNVPINFIREIAEMF 178
Query: 126 GLDPREVDVPVVG 138
+V + G
Sbjct: 179 SARLEDVFLKYYG 191
>1vjt_A Alpha-glucosidase; TM0752, structural genomics, JCSG, PSI, P
structure initiative, joint center for structural
genomics, hydrolase; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.5 d.162.1.2
Length = 483
Score = 31.0 bits (69), Expect = 0.39
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Query: 64 LCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAE 123
+ E + K PKA + +NPV E+ + V + ++G V V E
Sbjct: 154 IAEKMKKMAPKAYLMQTANPV-------FEITQAVRRWTGANIVG--FCHGVAGVYEVFE 204
Query: 124 VLGLDPREVDVPVVG 138
L LDP EVD V G
Sbjct: 205 KLDLDPEEVDWQVAG 219
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR
like protein, struc genomics, transcription; 1.60A
{Staphylococcus aureus}
Length = 119
Score = 28.6 bits (64), Expect = 0.84
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 158 LTPTEIDYLTDRIQ------NGGT-EVVEAKTGAGSATLS 190
T EI L+ R+Q G T +E ++GA +AT+S
Sbjct: 54 CTVNEIQSLSQRLQVAKMIKQGYTYATIEQESGASTATIS 93
>2ww2_A Mannosidase, alpha-1,2-mannosidase; hydrolase, glycoside hydrolase
family 92, BT2199; HET: SWA; 1.90A {Bacteroides
thetaiotaomicron} PDB: 2wvy_A*
Length = 737
Score = 29.9 bits (68), Expect = 1.1
Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 13/74 (17%)
Query: 194 AAAKFADACLRGLRG-DAGVIECAYVA--STVTELPFFASKVRLGRAGIEEIYSLG--PL 248
+ + DA ++G++ D E A A + V GR G E LG P
Sbjct: 384 SVSLLVDAWMKGIQTVD---AEKALEAMIHQTQARHAEIASV--GRDGFEYYDKLGYVPY 438
Query: 249 NEYERA---GLEKA 259
E A LE A
Sbjct: 439 PEVPEATAKTLEYA 452
>3frw_A Putative Trp repressor protein; structural genomics, APC21159,
PSI-2, P structure initiative; 2.05A {Ruminococcus obeum
atcc 29174} PDB: 3g1c_A
Length = 107
Score = 28.2 bits (63), Expect = 1.2
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 7/40 (17%)
Query: 158 LTPTEIDYLTDRIQ------NGGT-EVVEAKTGAGSATLS 190
T E+ L+ R + + T + KTGA +AT+S
Sbjct: 37 CTINELLSLSQRFEVAKMLTDKRTYLDISEKTGASTATIS 76
>2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A*
Length = 99
Score = 26.9 bits (60), Expect = 3.2
Identities = 5/31 (16%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 103 PKRLLGVTMLDVVRANTFVAEVLGLDPREVD 133
++ + V++ +AE L + E+
Sbjct: 14 VNQVNLSEIKQVLKQQ--LAEALYTEESEIA 42
>2wvx_A Mannosidase, putative alpha-1,2-mannosidase; glycoside hydrolase
family 92, GH92, hydrolase, BT3990; HET: MSE; 1.90A
{Bacteroides thetaiotaomicron} PDB: 2wvz_A* 2ww0_A*
2ww1_A* 2ww3_A* 2wvx_B* 2wzs_A*
Length = 744
Score = 28.0 bits (63), Expect = 3.5
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 194 AAAKFADACLRGLRG-DAGVIECAYVA--STVTELPFFASKVRLGRAGIEEIYSLG 246
+A+ DA ++G++ D I+ Y + S GR G E LG
Sbjct: 380 SASILVDAYMKGVKVDD---IKTLYEGLIHGTENVHPEVSST--GRLGYEYYNKLG 430
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors,
dimerization, glutamic acid BIN structural genomics,
structural genomics consortium; HET: Z99 NAG; 1.90A
{Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A*
1iss_A* 3lmk_A*
Length = 496
Score = 27.9 bits (62), Expect = 4.1
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 6/31 (19%)
Query: 76 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRL 106
I+NL N + VGT+ L
Sbjct: 454 IMNLQYTEANRYD------YVHVGTWHEGVL 478
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 26.9 bits (59), Expect = 6.4
Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 158 LTPTEIDYLTDRIQ-NGGTEVVEAKTGAGSATLSMAYAAAKF 198
+ P + Y+ ++ N V+E TG+G+ ++ A +
Sbjct: 75 IYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEV 116
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.392
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,346,513
Number of extensions: 282184
Number of successful extensions: 953
Number of sequences better than 10.0: 1
Number of HSP's gapped: 849
Number of HSP's successfully gapped: 71
Length of query: 276
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 184
Effective length of database: 4,133,061
Effective search space: 760483224
Effective search space used: 760483224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)