BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023854
(276 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EMN|X Chain X, The Crystal Structure Of Mouse Vdac1 At 2.3 A Resolution
Length = 295
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 121/283 (42%), Gaps = 16/283 (5%)
Query: 5 PGLYSEIGKKARDLLYKDYQSDH-KFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNK 63
P Y+++GK ARD+ K Y K + T + G+ TSSG E + S + K +
Sbjct: 16 PPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYR 75
Query: 64 ----NITTDVKVDTNSNLFTTITV-DEPAPGLKSIF-SFIVPD--QRSGKVELQYQHEYA 115
+T K +T++ L T ITV D+ A GLK F S P+ +++ K++ Y+ E+
Sbjct: 76 WTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHI 135
Query: 116 GISTGIGF-TANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLT 174
+ + F A P G ++F+T+ T+ N + Y +
Sbjct: 136 NLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHTN 195
Query: 175 LNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENT-LTIGTQHALDPLTSVKARVNN 233
+ND G S Y V+ TAV T + N NT I ++ +DP A+VNN
Sbjct: 196 VND-GTEFGGSIYQKVNKKLETAVNLAWT---AGNSNTRFGIAAKYQVDPDACFSAKVNN 251
Query: 234 YGRASALIQHEWRPKSLFTISGEVDTRAIEKSA-KIGLALALK 275
+P T+S +D + + K+GL L +
Sbjct: 252 SSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQ 294
>pdb|2K4T|A Chain A, Solution Structure Of Human Vdac-1 In Ldao Micelles
Length = 291
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 120/283 (42%), Gaps = 16/283 (5%)
Query: 5 PGLYSEIGKKARDLLYKDYQSDH-KFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNK 63
P Y+++GK ARD+ K Y K + T + G+ TSSG E S + K +
Sbjct: 4 PPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLETKYR 63
Query: 64 ----NITTDVKVDTNSNLFTTITV-DEPAPGLKSIF-SFIVPD--QRSGKVELQYQHEYA 115
+T K +T++ L T ITV D+ A GLK F S P+ +++ K++ Y+ E+
Sbjct: 64 WTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHI 123
Query: 116 GISTGIGF-TANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLT 174
+ + F A P G ++F+TA T+ N + Y +
Sbjct: 124 NLGCDMDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQLHTN 183
Query: 175 LNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENT-LTIGTQHALDPLTSVKARVNN 233
+ND G S Y V+ TAV T + N NT I ++ +DP A+VNN
Sbjct: 184 VND-GTEFGGSIYQKVNKKLETAVNLAWT---AGNSNTRFGIAAKYQIDPDACFSAKVNN 239
Query: 234 YGRASALIQHEWRPKSLFTISGEVDTRAIEKSA-KIGLALALK 275
+P T+S +D + + K+GL L +
Sbjct: 240 SSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQ 282
>pdb|2JK4|A Chain A, Structure Of The Human Voltage-Dependent Anion Channel
Length = 294
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 120/283 (42%), Gaps = 16/283 (5%)
Query: 5 PGLYSEIGKKARDLLYKDYQSDH-KFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNK 63
P Y+++GK ARD+ K Y K + T + G+ TSSG E S + K +
Sbjct: 7 PPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLETKYR 66
Query: 64 ----NITTDVKVDTNSNLFTTITV-DEPAPGLKSIF-SFIVPD--QRSGKVELQYQHEYA 115
+T K +T++ L T ITV D+ A GLK F S P+ +++ K++ Y+ E+
Sbjct: 67 WTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHI 126
Query: 116 GISTGIGF-TANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLT 174
+ + F A P G ++F+TA T+ N + Y +
Sbjct: 127 NLGCDMDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQLHTN 186
Query: 175 LNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENT-LTIGTQHALDPLTSVKARVNN 233
+ND G S Y V+ TAV T + N NT I ++ +DP A+VNN
Sbjct: 187 VND-GTEFGGSIYQKVNKKLETAVNLAWT---AGNSNTRFGIAAKYQIDPDACFSAKVNN 242
Query: 234 YGRASALIQHEWRPKSLFTISGEVDTRAIEKSA-KIGLALALK 275
+P T+S +D + + K+GL L +
Sbjct: 243 SSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQ 285
>pdb|3ZTV|A Chain A, Structure Of Haemophilus Influenzae Nad Nucleotidase
(Nadn)
pdb|3ZU0|A Chain A, Structure Of Haemophilus Influenzae Nad Nucleotidase
(Nadn)
pdb|3ZU0|B Chain B, Structure Of Haemophilus Influenzae Nad Nucleotidase
(Nadn)
Length = 579
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Query: 153 GNFTKCNAGLSYTHTDLIASLTLNDKGDTLNAS-YYHIVSPLTNTAV-GAELTHSFSSNE 210
G F+ NA L+ L L+ GD + + Y+ + + AV A H F+
Sbjct: 44 GGFSAVNAKLNKLRKKYKNPLVLH-AGDAITGTLYFTLFGGSADAAVMNAGNFHYFTLGN 102
Query: 211 NTLTIGTQHALDPLTSVKARV---NNYGRASALIQHEWRPKSLFTISGE 256
+ G + L L +K V N S+++ ++W+P +FT+ GE
Sbjct: 103 HEFDAGNEGLLKLLEPLKIPVLSANVIPDKSSILYNKWKPYDIFTVDGE 151
>pdb|4FGC|A Chain A, Crystal Structure Of Active Site Mutant C55a Of Nitrile
Reductase Quef, Bound To Substrate Preq0
pdb|4FGC|B Chain B, Crystal Structure Of Active Site Mutant C55a Of Nitrile
Reductase Quef, Bound To Substrate Preq0
pdb|4FGC|C Chain C, Crystal Structure Of Active Site Mutant C55a Of Nitrile
Reductase Quef, Bound To Substrate Preq0
pdb|4FGC|D Chain D, Crystal Structure Of Active Site Mutant C55a Of Nitrile
Reductase Quef, Bound To Substrate Preq0
pdb|4FGC|E Chain E, Crystal Structure Of Active Site Mutant C55a Of Nitrile
Reductase Quef, Bound To Substrate Preq0
Length = 165
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 52 FLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQR 102
+ DV NK++ D V N FT++ P +I+ +PD++
Sbjct: 26 YAPDVLESFPNKHVNRDYFVKFNCPEFTSLAPKTGQPDFATIYISYIPDEK 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,465,936
Number of Sequences: 62578
Number of extensions: 283432
Number of successful extensions: 449
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 445
Number of HSP's gapped (non-prelim): 8
length of query: 276
length of database: 14,973,337
effective HSP length: 97
effective length of query: 179
effective length of database: 8,903,271
effective search space: 1593685509
effective search space used: 1593685509
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)