Query 023854
Match_columns 276
No_of_seqs 126 out of 612
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 13:54:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023854.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023854hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3emn_X Voltage-dependent anion 100.0 2.4E-68 8.3E-73 472.2 38.7 272 2-276 13-295 (295)
2 3emn_X Voltage-dependent anion 98.6 0.00015 5.3E-09 63.6 29.2 184 28-217 96-291 (295)
3 3nsg_A Outer membrane protein 85.0 19 0.00065 31.4 19.9 117 156-275 171-340 (341)
4 3bs0_A TODX; beta barrel, oute 84.9 22 0.00075 32.1 18.2 51 179-231 278-354 (439)
5 3bry_A TBUX; beta barrel, oute 83.2 26 0.00088 31.5 17.6 25 180-206 279-303 (441)
6 1uyn_X NALP; autotransporter, 74.9 27 0.00094 29.8 10.8 64 196-259 210-291 (308)
7 3pgu_A Long-chain fatty acid t 73.2 17 0.00058 32.9 9.3 75 180-260 273-350 (427)
8 3dwo_X Probable outer membrane 72.3 57 0.0019 29.6 19.3 49 180-230 286-356 (451)
9 2por_A Porin; HET: C8E; 1.80A 72.1 46 0.0016 28.4 17.1 63 211-274 230-299 (301)
10 3prn_A Porin; integral membran 68.1 57 0.002 27.9 16.6 113 156-274 162-289 (289)
11 3kvn_X Esterase ESTA; beta bar 63.1 1E+02 0.0035 29.1 17.8 64 196-259 534-615 (632)
12 2wjr_A Probable N-acetylneuram 60.1 18 0.00061 29.6 6.0 29 178-206 52-80 (214)
13 2x55_A Coagulase/fibrinolysin; 55.7 97 0.0033 26.5 18.7 116 135-259 121-249 (293)
14 3pgu_A Long-chain fatty acid t 54.7 1.2E+02 0.0041 27.2 19.6 108 130-251 276-397 (427)
15 1i78_A Protease VII; integral 49.8 1.2E+02 0.0042 25.9 22.4 114 135-259 121-255 (297)
16 1pho_A Phosphoporin; outer mem 49.5 1.2E+02 0.0041 25.7 19.7 65 210-274 244-328 (330)
17 3qra_A AIL, attachment invasio 40.1 1.2E+02 0.0041 23.0 13.1 23 235-257 116-138 (157)
18 2lme_A Adhesin YADA; trimeric 39.9 54 0.0019 23.4 5.2 35 196-232 54-88 (105)
19 2fgq_X OMP32, outer membrane p 38.7 1.8E+02 0.0063 24.7 16.6 101 156-259 170-296 (332)
20 3vy8_X Outer membrane protein; 37.8 2E+02 0.007 25.0 19.6 42 79-120 146-202 (355)
21 2zfg_A Outer membrane protein 36.5 2E+02 0.0069 24.5 19.7 65 210-274 254-338 (340)
22 3vy8_X Outer membrane protein; 34.7 2.3E+02 0.0078 24.7 13.6 45 210-255 271-330 (355)
23 2lme_A Adhesin YADA; trimeric 33.1 72 0.0025 22.7 4.9 38 235-275 67-104 (105)
24 3nsg_A Outer membrane protein 32.9 2.4E+02 0.0081 24.2 20.7 18 212-229 293-310 (341)
25 1pho_A Phosphoporin; outer mem 32.2 2.3E+02 0.0078 23.9 17.1 72 156-229 208-301 (330)
26 2fgq_X OMP32, outer membrane p 31.9 2.4E+02 0.0082 24.0 18.9 19 211-229 272-290 (332)
27 2vdf_A OPCA, outer membrane pr 30.6 2.3E+02 0.0078 23.4 8.9 14 215-228 149-162 (253)
28 2por_A Porin; HET: C8E; 1.80A 27.8 2.7E+02 0.0092 23.3 15.3 21 211-231 261-281 (301)
29 4e1s_A Intimin; outer membrane 27.4 2.6E+02 0.009 23.1 13.7 38 137-174 60-98 (242)
30 3prn_A Porin; integral membran 26.0 3.1E+02 0.01 23.3 19.2 127 105-234 132-274 (289)
31 3bry_A TBUX; beta barrel, oute 23.8 3.7E+02 0.013 23.6 16.7 12 137-148 290-301 (441)
32 3aeh_A Hemoglobin-binding prot 23.1 2.9E+02 0.01 23.0 8.0 21 211-231 264-284 (308)
33 4e1t_A Invasin; outer membrane 20.9 3.6E+02 0.012 22.3 15.7 38 137-174 63-101 (245)
34 2j1n_A Outer membrane protein 20.7 3.9E+02 0.013 22.7 19.8 135 138-275 141-345 (346)
No 1
>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A
Probab=100.00 E-value=2.4e-68 Score=472.23 Aligned_cols=272 Identities=25% Similarity=0.391 Sum_probs=260.2
Q ss_pred CCCCCcccccccccccccccCCCCc-eeEEEEEecCCCcEEEEEEEecC--ceeEEEEEEEEeec--CeEEEEEEcCCCc
Q 023854 2 VKGPGLYSEIGKKARDLLYKDYQSD-HKFTVTTYTSAGVAITSSGVKKG--ELFLADVSTQLKNK--NITTDVKVDTNSN 76 (276)
Q Consensus 2 ~~~P~~f~dl~K~akdll~k~y~~~-~~l~~~~~~~~g~~f~~~~~~~~--~~~~g~~e~~~~~~--~~~~~~~~~~~~~ 76 (276)
|.+||.|.||+|.|||||+|||+++ |+|+|++++++|++|++++...+ +++.|++|++|+.+ +++++++|+|+|+
T Consensus 13 ~~~pp~y~DigK~AkDll~kdy~~~~~kl~~kt~s~~gv~ft~~g~~~~~~~~v~g~le~kyk~~~~g~t~~~kw~t~n~ 92 (295)
T 3emn_X 13 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYRWTEYGLTFTEKWNTDNT 92 (295)
T ss_dssp CCSCCCGGGTTHHHHHHHHTTCCTTEEEEEEECCCSSEEEEEEEEEEETTTCCEEEEEEEEEEETTTTEEEEEEEETTSC
T ss_pred cCCCCcccccccchHHhccCCcCCCCEEEEEEEEcCCCEEEEEEEEecCCCCceeeEEEEEEEecCCcEEEEEEEeCCCc
Confidence 4789999999999999999999999 99999999999999999998766 89999999999998 4999999999999
Q ss_pred EEEEEEEcC-CCCCceEEEEEEc-cC--CCCceEEEEEeecceeeeEEEecC-CCCeEEEEEEEccCceEEEEEEEEEcC
Q 023854 77 LFTTITVDE-PAPGLKSIFSFIV-PD--QRSGKVELQYQHEYAGISTGIGFT-ANPIVNFSGVVGNNSVALGTDLSFDTA 151 (276)
Q Consensus 77 l~~~~~~~~-~~~glk~~~~~~~-~~--~~~~~~~~~y~~~~~~~~~~~~~~-~~p~~~~s~v~~~~~~~~G~e~~y~~~ 151 (276)
|.+++++++ ++||||+.+++.+ |+ .++++++++|++++++++++++++ ++|.++.++++++++|++|+|+.||++
T Consensus 93 l~t~i~~~~~l~~Glk~~~~~~~~P~~~~ks~kl~~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~g~~~~~~G~e~~yd~~ 172 (295)
T 3emn_X 93 LGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETS 172 (295)
T ss_dssp EEEEEEEESSSSTTEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEETT
T ss_pred EEEEEEEccccCCceEEEEEEEECCCCCCcceEEEEEEEcCCEeEEEEEEeccCCCEEEEEEEEeeCCEEEEEEEEEEeC
Confidence 999999999 9999999999996 76 478999999999999999999994 899999999999999999999999999
Q ss_pred CCcceeeEeEEEEEeCCeEEEEEEcCCCCeEEEEEEEEeCCCcceeEEEEEEEeecCCceEEEEEEEEeeCCCCeEEEEE
Q 023854 152 TGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARV 231 (276)
Q Consensus 152 ~~~~~~~~~~~~y~~~~~~~s~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~~~Kakv 231 (276)
.+++++|+++++|+.+||++++++++ ++.+.+|||||++++ +++|+|+.|+.+.++++++||+||++|+++++||||
T Consensus 173 ~~~~t~~n~~~gY~~~d~~~s~~l~~-~~~~~aSy~qkvs~~--~~~g~e~~~~~~~~~~~~tvG~ky~ld~~~~vKakv 249 (295)
T 3emn_X 173 KSRVTQSNFAVGYKTDEFQLHTNVND-GTEFGGSIYQKVNKK--LETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKV 249 (295)
T ss_dssp TTEEEEEEEEEEEECSSEEEEEEEET-TTEEEEEEEEECSSS--EEEEEEEEEETTEEEEEEEEEEEECCSSSEEEEEEE
T ss_pred CCCeeeEEEEEEEcCCCEEEEEEECC-CCeEEEEEEEECCCc--eEEEEEEEEeccCCCcEEEEEEEEEcCCCCEEEEEE
Confidence 88999999999999999999999984 789999999999999 999999999998899999999999999999999999
Q ss_pred cCCceEEEEEEEEecCCeEEEEEEEEeccccC-CCCeeEEEEEEcC
Q 023854 232 NNYGRASALIQHEWRPKSLFTISGEVDTRAIE-KSAKIGLALALKP 276 (276)
Q Consensus 232 ds~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~-~~~K~G~~l~~~~ 276 (276)
|++|.|+++|||+|+|++++++|++||+++++ +.||||++|+||+
T Consensus 250 n~~g~v~~~y~~kl~p~v~ltls~~iD~~~l~~~~~K~Gl~l~l~~ 295 (295)
T 3emn_X 250 NNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 295 (295)
T ss_dssp ETTSEEEEEEEEEEETTEEEEEEEEEESSCTTTSCCEEEEEEEEEC
T ss_pred CCCCEEEEEEEEecCCCcEEEEEEEECccccCCCCCcEEEEEEEeC
Confidence 99999999999999999999999999999884 7899999999986
No 2
>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A
Probab=98.61 E-value=0.00015 Score=63.60 Aligned_cols=184 Identities=15% Similarity=0.185 Sum_probs=121.7
Q ss_pred eEEEEEecCCCcEEEEEEEe-cC-ceeEEEEEEEEeecCeEEEEEEcC---CCcEEEEEEEcCCCCCceEEEEEEc--cC
Q 023854 28 KFTVTTYTSAGVAITSSGVK-KG-ELFLADVSTQLKNKNITTDVKVDT---NSNLFTTITVDEPAPGLKSIFSFIV--PD 100 (276)
Q Consensus 28 ~l~~~~~~~~g~~f~~~~~~-~~-~~~~g~~e~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~glk~~~~~~~--~~ 100 (276)
++++..+...|++......- ++ +.-.+.++..|+.+.+.+...++- .-.+.....+. .+++-+-.+..+ +.
T Consensus 96 ~i~~~~~l~~Glk~~~~~~~~P~~~~ks~kl~~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~g--~~~~~~G~e~~yd~~~ 173 (295)
T 3emn_X 96 EITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLG--YEGWLAGYQMNFETSK 173 (295)
T ss_dssp EEEEESSSSTTEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEECTTCCEEEEEEEEE--ETTEEEEEEEEEETTT
T ss_pred EEEEccccCCceEEEEEEEECCCCCCcceEEEEEEEcCCEeEEEEEEeccCCCEEEEEEEEe--eCCEEEEEEEEEEeCC
Confidence 45555544557666555543 22 356889999999887666444322 23444444333 466666666543 22
Q ss_pred C--CCceEEEEEeecceeeeEEEecCCCCeEEEEEEE-ccCceEEEEEEEEEcCCCcceeeEeEEEEEe-CCeEEEEEEc
Q 023854 101 Q--RSGKVELQYQHEYAGISTGIGFTANPIVNFSGVV-GNNSVALGTDLSFDTATGNFTKCNAGLSYTH-TDLIASLTLN 176 (276)
Q Consensus 101 ~--~~~~~~~~y~~~~~~~~~~~~~~~~p~~~~s~v~-~~~~~~~G~e~~y~~~~~~~~~~~~~~~y~~-~~~~~s~~~~ 176 (276)
. ....+.+.|..+.+.+...++ ....+.+|..- +.+++.+|+|+.|+...+ -....+|.+|.- ++.++.++++
T Consensus 174 ~~~t~~n~~~gY~~~d~~~s~~l~--~~~~~~aSy~qkvs~~~~~g~e~~~~~~~~-~~~~tvG~ky~ld~~~~vKakvn 250 (295)
T 3emn_X 174 SRVTQSNFAVGYKTDEFQLHTNVN--DGTEFGGSIYQKVNKKLETAVNLAWTAGNS-NTRFGIAAKYQVDPDACFSAKVN 250 (295)
T ss_dssp TEEEEEEEEEEEECSSEEEEEEEE--TTTEEEEEEEEECSSSEEEEEEEEEETTEE-EEEEEEEEEECCSSSEEEEEEEE
T ss_pred CCeeeEEEEEEEcCCCEEEEEEEC--CCCeEEEEEEEECCCceEEEEEEEEeccCC-CcEEEEEEEEEcCCCCEEEEEEC
Confidence 1 234578889999887666654 23567766554 689999999999998643 467888888986 5899999999
Q ss_pred CCCCeEEEEEEEEeCCCcceeEEEEEEEe-ecCCceEEEEEE
Q 023854 177 DKGDTLNASYYHIVSPLTNTAVGAELTHS-FSSNENTLTIGT 217 (276)
Q Consensus 177 ~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~-~~~~~~~~~vG~ 217 (276)
+++ .+.+.|-|++.|...+.+++|+... +..+...+.+|.
T Consensus 251 ~~g-~v~~~y~~kl~p~v~ltls~~iD~~~l~~~~~K~Gl~l 291 (295)
T 3emn_X 251 NSS-LIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGL 291 (295)
T ss_dssp TTS-EEEEEEEEEEETTEEEEEEEEEESSCTTTSCCEEEEEE
T ss_pred CCC-EEEEEEEEecCCCcEEEEEEEECccccCCCCCcEEEEE
Confidence 876 9999999999999545666666543 223455555554
No 3
>3nsg_A Outer membrane protein F; porin, beta barrel, beta barrel MEMB protein; HET: LDA TAM FLC TLA; 2.79A {Salmonella enterica subsp}
Probab=84.97 E-value=19 Score=31.45 Aligned_cols=117 Identities=5% Similarity=0.000 Sum_probs=72.1
Q ss_pred eeeEeEEEEEeCCeEEEEEEcC---------------CCCeEEEEEEEEeCCCcceeEEEEEEEeec-------------
Q 023854 156 TKCNAGLSYTHTDLIASLTLND---------------KGDTLNASYYHIVSPLTNTAVGAELTHSFS------------- 207 (276)
Q Consensus 156 ~~~~~~~~y~~~~~~~s~~~~~---------------~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~------------- 207 (276)
..|.+++.|....+.+.+-... ..+.+.+.--+.+.+ +.+++...+...
T Consensus 171 ~~~~~~~~Y~~g~l~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~g~~Y~~g~---~~l~a~Y~~~~~~~~~~~~~~~~~~ 247 (341)
T 3nsg_A 171 DGVGYTMAYEFDGFGVTAAYSNSKRTNDQQDRDGNGDRAESRAVGAKYDANN---VYLAAVYAETRNMSIVENTVTDTVE 247 (341)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEECCCSTTSSSSSCCSCEEEEEEEEEEEETT---EEEEEEEEEESSCCCEECTTTCCEE
T ss_pred ceEEEEEEEEcCCEEEEEEEEeecCcccccccccCccceEEEEEEeEEEeCC---EEEEEEEEEEEeccccCcccccccc
Confidence 4577777787777766654321 012233333334432 355554443321
Q ss_pred --CCceEEEEEEEEeeCCCCeEEEEE-----cC----------CceEEEEEEEEecCCeEEEEEEEEeccc--------c
Q 023854 208 --SNENTLTIGTQHALDPLTSVKARV-----NN----------YGRASALIQHEWRPKSLFTISGEVDTRA--------I 262 (276)
Q Consensus 208 --~~~~~~~vG~~y~ld~~~~~Kakv-----ds----------~g~v~~~~~~~l~~~~~l~ls~~~d~~~--------~ 262 (276)
.+...+++|++|++.+..++++-. +. .-.+.+.++..|++...+-+...+|..+ .
T Consensus 248 ~~~~~~~~~~ga~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~lg~~Y~LSKrT~lY~~y~~~~~~~~~~~~~~~ 327 (341)
T 3nsg_A 248 MANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKNMNVWVDYRFNLLDENDYSSSYV 327 (341)
T ss_dssp CCSEEEEEEEEEEECCTTSCCEEEEEEEEEEESCTTTTSCEEEEEEEEEEEEECCCSSEEEEEEEEEECCCCCSSCTTTT
T ss_pred cceEEEEEEEEEEEEecCCcEEEEEEEEEeccccccccCCcCccEEEEEEEEEEecCCEEEEEEEEEecccCcccccccc
Confidence 134568999999998876666532 11 2247888999999999999988887642 1
Q ss_pred CCCCeeEEEEEEc
Q 023854 263 EKSAKIGLALALK 275 (276)
Q Consensus 263 ~~~~K~G~~l~~~ 275 (276)
..+-.+++||...
T Consensus 328 ~~dd~~~vGlry~ 340 (341)
T 3nsg_A 328 GTDDQAAVGITYQ 340 (341)
T ss_dssp CSSCEEEEEEEEE
T ss_pred CcCCEEEEEEEEE
Confidence 2356899998753
No 4
>3bs0_A TODX; beta barrel, outer membrane protein, transport protein; HET: C8E; 2.60A {Pseudomonas putida} PDB: 3brz_A*
Probab=84.90 E-value=22 Score=32.08 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=36.7
Q ss_pred CCeEEEEEEEEeCCCcceeEEEEEEEeecC--------------------------CceEEEEEEEEeeCCCCeEEEEE
Q 023854 179 GDTLNASYYHIVSPLTNTAVGAELTHSFSS--------------------------NENTLTIGTQHALDPLTSVKARV 231 (276)
Q Consensus 179 ~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~--------------------------~~~~~~vG~~y~ld~~~~~Kakv 231 (276)
-..+.++..|+++++ +.+.+++.|..-+ ....+++|++|++++..++|+=+
T Consensus 278 P~~~~~g~~~~~~~~--~~l~~d~~~~~WS~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~lG~ey~~~~~~~lRaG~ 354 (439)
T 3bs0_A 278 PASLTLGLAHQFNER--WVVAADIKRAYWGDVMDSMNVAFISQLGGIDVALPHRYQDITVASIGTAYKYNNDLTLRAGY 354 (439)
T ss_dssp CCEEEEEEEEESSSS--EEEEEEEEEECGGGCCC-CCCEEEETTEEEEECCCCCCCCEEEEEEEEEEECSSSEEEEEEE
T ss_pred CcEEEEeEEEEeCCC--EEEEEEEEEEEccchhhheeeeecCCCCCccccCCCCceeeeEEEEEEEEEcCCCEEEEEee
Confidence 357899999999999 8999988876321 12246777777777676676654
No 5
>3bry_A TBUX; beta barrel, outer membrane protein, transport protein; HET: C8E; 3.20A {Ralstonia pickettii}
Probab=83.18 E-value=26 Score=31.54 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=21.2
Q ss_pred CeEEEEEEEEeCCCcceeEEEEEEEee
Q 023854 180 DTLNASYYHIVSPLTNTAVGAELTHSF 206 (276)
Q Consensus 180 ~~~~~Sy~~kv~~~~~~~~g~e~~~~~ 206 (276)
..+.++..|+++++ +.+.+++.|..
T Consensus 279 ~~~~~g~~~~~~~~--~~l~~d~~~~~ 303 (441)
T 3bry_A 279 AQLTVGISHQFNDQ--LSVSADYQRVF 303 (441)
T ss_dssp CEEEEEEEEESSSS--EEEEEEEEEEC
T ss_pred cEEEEeEEEEeCCC--EEEEEEEEEEE
Confidence 57889999999998 88898888753
No 6
>1uyn_X NALP; autotransporter, translocator domain, membrane protein, OUTE membrane, beta-domain, beta-barrel; HET: CXE; 2.60A {Neisseria meningitidis} SCOP: f.4.5.1 PDB: 1uyo_X*
Probab=74.90 E-value=27 Score=29.81 Aligned_cols=64 Identities=14% Similarity=-0.037 Sum_probs=40.4
Q ss_pred eeEEEEEEEeec-CCceEEEEEEEEee-CCCCeEEEEE----------------cCCceEEEEEEEEecCCeEEEEEEEE
Q 023854 196 TAVGAELTHSFS-SNENTLTIGTQHAL-DPLTSVKARV----------------NNYGRASALIQHEWRPKSLFTISGEV 257 (276)
Q Consensus 196 ~~~g~e~~~~~~-~~~~~~~vG~~y~l-d~~~~~Kakv----------------ds~g~v~~~~~~~l~~~~~l~ls~~~ 257 (276)
.++|.++.+.+. .-.....+++++.+ +....+.+.+ .+...+++.++.++++++++.++-+-
T Consensus 210 ~~lG~r~~~~~~~~~~~~~~~~~~h~~~~~~~~~~a~f~~~~~~~F~~~g~~~~~~~~~~g~G~~~~~~~~~~l~~~y~~ 289 (308)
T 1uyn_X 210 GLAGLKLSQPLSDKAVLFATAGVERDLNGRDYTVTGGFTGATAATGKTGARNMPHTRLVAGLGADVEFGNGWNGLARYSY 289 (308)
T ss_dssp EEEEEEEEEECSSSEEEEEEEEEEEESSCCCCCCCC-----------------CCEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred EeeeEEEEEEecCceEEEEEEEEEeccCCCCcceEEEeecCCCceEEEccccCCCceEEEeeeEEEEecCCEEEEEEEEE
Confidence 567888777763 33456788888888 3332222222 22346888899999998777766655
Q ss_pred ec
Q 023854 258 DT 259 (276)
Q Consensus 258 d~ 259 (276)
..
T Consensus 290 ~~ 291 (308)
T 1uyn_X 290 AG 291 (308)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 7
>3pgu_A Long-chain fatty acid transport protein; outer membrane beta barrel, lipid transport, outer membrane; HET: C8E 2PE OLA; 1.70A {Escherichia coli k-12} SCOP: f.4.3.4 PDB: 3pgs_A* 1t16_A* 1t1l_A* 3dwn_A* 2r4p_A* 3pgr_A* 2r4n_A* 2r4l_A* 2r89_A 2r4o_A* 3pf1_A* 2r8a_A* 2r88_A
Probab=73.16 E-value=17 Score=32.92 Aligned_cols=75 Identities=15% Similarity=0.021 Sum_probs=46.4
Q ss_pred CeEEEEEEEEeCCCcceeEEEEEEEeecCCceEEEEEEEEeeCCCC---eEEEEEcCCceEEEEEEEEecCCeEEEEEEE
Q 023854 180 DTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLT---SVKARVNNYGRASALIQHEWRPKSLFTISGE 256 (276)
Q Consensus 180 ~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~---~~Kakvds~g~v~~~~~~~l~~~~~l~ls~~ 256 (276)
..+.++..|+++++ +.+.+++.|..=+.-..+.+- .+... ...-..++.+.+.+..+.++++.+++..+..
T Consensus 273 ~~~~~g~~~~~~~~--~~l~~d~~~~~WS~~~~~~~~----~~~g~~~~~~~~~~~D~~~~~lG~eY~~~~~~~lRaG~~ 346 (427)
T 3pgu_A 273 EMWEVSGYNRVDPQ--WAIHYSLAYTSWSQFQQLKAT----STSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIA 346 (427)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEESSCSCEEEE----EETTEEEEEECCCCEEEEEEEEEEEEECSSSEEEEEEEE
T ss_pred cEEEEEEEEecCCC--EEEEEEEEEEEeccccceEEE----cCCCcccccccCCceeccEEEEEEEEEcCCCEEEEEEEE
Confidence 57788999999999 899999998743321111111 10110 1112234556677777778888888777777
Q ss_pred Eecc
Q 023854 257 VDTR 260 (276)
Q Consensus 257 ~d~~ 260 (276)
.|..
T Consensus 347 yd~s 350 (427)
T 3pgu_A 347 FDDS 350 (427)
T ss_dssp EEEC
T ss_pred EccC
Confidence 7764
No 8
>3dwo_X Probable outer membrane protein; beta barrel; HET: C8E; 2.20A {Pseudomonas aeruginosa}
Probab=72.34 E-value=57 Score=29.59 Aligned_cols=49 Identities=20% Similarity=0.186 Sum_probs=33.8
Q ss_pred CeEEEEEEEEeCCCcceeEEEEEEEeecC----------------------CceEEEEEEEEeeCCCCeEEEE
Q 023854 180 DTLNASYYHIVSPLTNTAVGAELTHSFSS----------------------NENTLTIGTQHALDPLTSVKAR 230 (276)
Q Consensus 180 ~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~----------------------~~~~~~vG~~y~ld~~~~~Kak 230 (276)
..+.++..|+++++ +.+.+++.|..-+ ....+++|+.|+++++.++|+=
T Consensus 286 ~~~~lg~~~~~~~~--~~l~~d~~~~~wS~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~eY~~~~~~tlRaG 356 (451)
T 3dwo_X 286 AYASLDWVHQFNDR--LSLGASATWTEWSSFQDLTLKSHGNTIVSIPYTYRNTWTLAVGGDYKVTDQWTMRAG 356 (451)
T ss_dssp CEEEEEEEEECSSS--EEEEEEEEEECGGGCCEEEEEETTEEEEEEECCCCCEEEEEEEEEEESSSSEEEEEE
T ss_pred cEEEEEEEEEeCCC--EEEEEEEEEEEecCcceeEEEcCCccccccccCceeeeEEEEEEEEEeCCCEEEEEE
Confidence 57788899999998 7888888877322 2345666666666556566553
No 9
>2por_A Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} SCOP: f.4.3.1 PDB: 3por_A*
Probab=72.06 E-value=46 Score=28.36 Aligned_cols=63 Identities=2% Similarity=-0.080 Sum_probs=40.2
Q ss_pred eEEEEEE--EEeeCCCCeEEEEEc-----CCceEEEEEEEEecCCeEEEEEEEEeccccCCCCeeEEEEEE
Q 023854 211 NTLTIGT--QHALDPLTSVKARVN-----NYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALAL 274 (276)
Q Consensus 211 ~~~~vG~--~y~ld~~~~~Kakvd-----s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G~~l~~ 274 (276)
..+.+|. +|.+.+..++++... +.-.+++.+++.|+|++++-.+-..+-.+ +.+-.+-+|+.+
T Consensus 230 ~~~~lga~~~y~~~~~~~~~~~y~~~~~d~a~~~~lg~~Y~Ls~~~~lya~y~~~~~~-~~~~~~~~Gvr~ 299 (301)
T 2por_A 230 KAYGLSVDSTFGATTVGGYVQVLDIDTIDDVTYYGLGASYDLGGGASIVGGIADNDLP-NSDMVADLGVKF 299 (301)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEEEEETTEEEEEEEEEECSS-SCCCEEEEEEEE
T ss_pred ceEEEEEEEeEEcCCcEEEEEEEEcCCCCcccEEEEEEEEcCCCCeEEEEEEEeccCC-CCceeEEEEeEE
Confidence 4467777 777755444666553 23478999999999999997766554421 222445555544
No 10
>3prn_A Porin; integral membrane protein, pore eyelet mutant, membra protein; HET: C8E; 1.90A {Rhodobacter blasticus} SCOP: f.4.3.1 PDB: 1bh3_A* 1prn_A* 7prn_A* 6prn_A* 5prn_A* 2prn_A* 8prn_A* 1h6s_1
Probab=68.09 E-value=57 Score=27.94 Aligned_cols=113 Identities=12% Similarity=0.062 Sum_probs=67.9
Q ss_pred eeeEeEEEEEeCCeEEEEEEc--C----CCCeEEEEEEEEeCCCcceeEEEEEEEeec---CCceEEEEEEEEeeCCCCe
Q 023854 156 TKCNAGLSYTHTDLIASLTLN--D----KGDTLNASYYHIVSPLTNTAVGAELTHSFS---SNENTLTIGTQHALDPLTS 226 (276)
Q Consensus 156 ~~~~~~~~y~~~~~~~s~~~~--~----~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~---~~~~~~~vG~~y~ld~~~~ 226 (276)
..|.+++.|+..++.+++-.+ . +.+.+.++.=..+.+. +.+++ .|.-. .....+.++..|.+ ..++
T Consensus 162 d~~~l~a~Yt~g~~~v~aaY~~d~ag~~D~~~~~l~~~y~fG~~--~~v~~--~Y~d~~d~~~~~~~gl~~~Y~v-~a~t 236 (289)
T 3prn_A 162 EEFGIAADWSNDMISLAAAYTTDAGGIVDNDIAFVGAAYKFNDA--GTVGL--NWYDNGLSTAGDQVTLYGNYAF-GATT 236 (289)
T ss_dssp CEEEEEEEEECSSEEEEEEEEESGGGCTTCCEEEEEEEECCSSS--EEEEE--EEEECTTSTTCSEEEEEEEEEE-TTEE
T ss_pred ceEEEEEEEecCCEEEEEEEeccCCCCCCccEEEEEEEEEcCCC--eEEEE--EEEccccccCCceEEEEEEeEe-cCeE
Confidence 356666666655555555432 1 1135666666666644 34444 33322 23456788888888 7888
Q ss_pred EEEEEcC------CceEEEEEEEEecCCeEEEEEEEEeccccCCCCeeEEEEEE
Q 023854 227 VKARVNN------YGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALAL 274 (276)
Q Consensus 227 ~Kakvds------~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G~~l~~ 274 (276)
|++-+.. ....++.+++.|.++.+|..+-.=+-.. .....+|+.++|
T Consensus 237 v~a~y~D~~~~~~~t~yGIg~~YDLGgGasl~~gy~~~~~~-~~~ad~Gv~F~F 289 (289)
T 3prn_A 237 VRAYVSDIDRAGADTAYGIGADYQFAEGVKVSGSVQSGFAN-ETVADVGVRFDF 289 (289)
T ss_dssp EEEEEEEECSTTCCCEEEEEEEEEEETTEEEEEEEEECTTC-CEEEEEEEEEEC
T ss_pred EEEEEeccccCCCcceEEEEEEecCCCCeEEEEEEEEcCCC-ceEEeeeeEeeC
Confidence 8888653 2357899999999999988887633210 113567777664
No 11
>3kvn_X Esterase ESTA; beta barrel, alpha-beta-alpha motif, cell membrane, cell out membrane, hydrolase, membrane, transmembrane; HET: C8E; 2.50A {Pseudomonas aeruginosa}
Probab=63.09 E-value=1e+02 Score=29.09 Aligned_cols=64 Identities=11% Similarity=0.094 Sum_probs=45.9
Q ss_pred eeEEEEEEEeec-CCceEEEEEEEEee-CCCCeEEEEEcC----------------CceEEEEEEEEecCCeEEEEEEEE
Q 023854 196 TAVGAELTHSFS-SNENTLTIGTQHAL-DPLTSVKARVNN----------------YGRASALIQHEWRPKSLFTISGEV 257 (276)
Q Consensus 196 ~~~g~e~~~~~~-~~~~~~~vG~~y~l-d~~~~~Kakvds----------------~g~v~~~~~~~l~~~~~l~ls~~~ 257 (276)
..+|+++.+... .-...+.+++++.+ +....+++.+.. -+.+++.++-++.+++++.+..+-
T Consensus 534 ~~lG~r~~~~~~~~~~p~~~~~~~h~f~~~~~~~~~~f~~~~~~~f~~~g~~~~~~~~~~g~G~~~~~~~~~sl~~~y~~ 613 (632)
T 3kvn_X 534 LGAGLQGKYAFGSDTQLFAEYAHEREYEDDTQDLTMSLNSLPGNRFTLEGYTPQDHLNRVSLGFSQKLAPELSLRGGYNW 613 (632)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEEESCCCCCEEEEEETTCTTCCEEEECCCCCSEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEEEecceEEEEEEEEEehhhCCCCcceEEEeecCCCCceEEccccCCCCEEEEEEEEEEEECCCEEEEEEEEE
Confidence 577888888776 34667888888888 444667776655 234788889999998887766555
Q ss_pred ec
Q 023854 258 DT 259 (276)
Q Consensus 258 d~ 259 (276)
..
T Consensus 614 ~~ 615 (632)
T 3kvn_X 614 RK 615 (632)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 12
>2wjr_A Probable N-acetylneuraminic acid outer membrane C protein NANC; cell membrane, ION transport, transmembrane, porin, membrane transport; HET: EPE; 1.80A {Escherichia coli} PDB: 2wjq_A*
Probab=60.09 E-value=18 Score=29.65 Aligned_cols=29 Identities=10% Similarity=-0.016 Sum_probs=21.1
Q ss_pred CCCeEEEEEEEEeCCCcceeEEEEEEEee
Q 023854 178 KGDTLNASYYHIVSPLTNTAVGAELTHSF 206 (276)
Q Consensus 178 ~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~ 206 (276)
++.++.++|..|+++++-++-|..+.+..
T Consensus 52 ng~E~~~~Y~~k~~d~~~l~PG~~~~~~s 80 (214)
T 2wjr_A 52 NDVQVEVNYAIKLDDQWTVRPGMLTHFSS 80 (214)
T ss_dssp CEEEEEEEECEESSSSEEEEEEEEEEEET
T ss_pred ccEEEEEEEEEEcCCCEEEecceEEEecC
Confidence 56789999999999985555555555553
No 13
>2x55_A Coagulase/fibrinolysin; transmembrane, aspartyl protease, cell outer membrane, OMPT protease, hydrolase; HET: C8E; 1.85A {Yersinia pestis} PDB: 2x56_A* 2x4m_A*
Probab=55.69 E-value=97 Score=26.46 Aligned_cols=116 Identities=9% Similarity=0.002 Sum_probs=72.0
Q ss_pred EccCceEEEEEEEEEcCCCcceeeEeEEEEEeCCeEEEEEEcCCCCeEEEEEEEEeCCCcceeEEEEEEEeecCCceEEE
Q 023854 135 VGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLT 214 (276)
Q Consensus 135 ~~~~~~~~G~e~~y~~~~~~~~~~~~~~~y~~~~~~~s~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~ 214 (276)
+..+++.+|+.+.|+....+...+.....|....... ..+. .....+|-|+..- .-+|....|... .-.+.
T Consensus 121 l~~~~~~lg~~~Gy~y~~~~w~A~gG~~~Y~~~~~~~---~~p~-~~~~I~Y~Q~~~~---pyiGL~g~yr~~--~~~l~ 191 (293)
T 2x55_A 121 LQDENYKAGITAGYQETRFSWTATGGSYSYNNGAYTG---NFPK-GVRVIGYNQRFSM---PYIGLAGQYRIN--DFELN 191 (293)
T ss_dssp EECSSEEEEEEEEEEEEEEEEEEESCEEEETTTTEEE---ECCT-TCEEEEEEEEEEE---EEEEEEEEEEET--TEEEE
T ss_pred EcCCCeEEeEEeceEEEeccccccCCcEEcCCCCccc---ccCC-CCcceeeEEEEEe---eeeeEEEEEEec--cEEEE
Confidence 3688899999999987643333333222344444322 2233 2677899999853 366777777663 44444
Q ss_pred EEEEEee-----------CCCCeEEEEEcCCc--eEEEEEEEEecCCeEEEEEEEEec
Q 023854 215 IGTQHAL-----------DPLTSVKARVNNYG--RASALIQHEWRPKSLFTISGEVDT 259 (276)
Q Consensus 215 vG~~y~l-----------d~~~~~Kakvds~g--~v~~~~~~~l~~~~~l~ls~~~d~ 259 (276)
+..+|.. -++.++|=+.++-. .+++.+...|.|++++-+.+....
T Consensus 192 ~~~~~s~~v~a~~~D~H~~R~l~F~d~~~~~~~~~~~~~~~Y~ltp~~sl~~e~~y~~ 249 (293)
T 2x55_A 192 ALFKFSDWVRAHDNDEHYMRDLTFREKTSGSRYYGTVINAGYYVTPNAKVFAEFTYSK 249 (293)
T ss_dssp EEEEEEEEEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEecceeEEEecccHHhccCCccccccCCCceEEEEEEEEEecCCCEEEEEEEEEEe
Confidence 4444432 13566666666542 366778889999999999988886
No 14
>3pgu_A Long-chain fatty acid transport protein; outer membrane beta barrel, lipid transport, outer membrane; HET: C8E 2PE OLA; 1.70A {Escherichia coli k-12} SCOP: f.4.3.4 PDB: 3pgs_A* 1t16_A* 1t1l_A* 3dwn_A* 2r4p_A* 3pgr_A* 2r4n_A* 2r4l_A* 2r89_A 2r4o_A* 3pf1_A* 2r8a_A* 2r88_A
Probab=54.71 E-value=1.2e+02 Score=27.19 Aligned_cols=108 Identities=13% Similarity=0.062 Sum_probs=52.4
Q ss_pred EEEEEE-ccCceEEEEEEEEEcCCCcceeeEeEEEEEeCCeEEEE--EEcCCCCeEEEEEEEEeCCCcceeEEEEEEEee
Q 023854 130 NFSGVV-GNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASL--TLNDKGDTLNASYYHIVSPLTNTAVGAELTHSF 206 (276)
Q Consensus 130 ~~s~v~-~~~~~~~G~e~~y~~~~~~~~~~~~~~~y~~~~~~~s~--~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~ 206 (276)
+++.-. ..++|++.+++.|..=+. +....+ .+......... ... +...+.+..-+++++++.+.+|....-..
T Consensus 276 ~~g~~~~~~~~~~l~~d~~~~~WS~-~~~~~~--~~~~g~~~~~~~~~~~-D~~~~~lG~eY~~~~~~~lRaG~~yd~sp 351 (427)
T 3pgu_A 276 EVSGYNRVDPQWAIHYSLAYTSWSQ-FQQLKA--TSTSGDTLFQKHEGFK-DAYRIALGTTYYYDDNWTFRTGIAFDDSP 351 (427)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEESS-CSCEEE--EEETTEEEEEECCCCE-EEEEEEEEEEEECSSSEEEEEEEEEEECC
T ss_pred EEEEEEecCCCEEEEEEEEEEEecc-ccceEE--EcCCCcccccccCCce-eccEEEEEEEEEcCCCEEEEEEEEEccCC
Confidence 444333 378888888888753211 211211 11111100000 011 12345556667777774444444333221
Q ss_pred -----------cCCceEEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEEecCCeEE
Q 023854 207 -----------SSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLF 251 (276)
Q Consensus 207 -----------~~~~~~~~vG~~y~ld~~~~~Kakvds~g~v~~~~~~~l~~~~~l 251 (276)
......+++|..|+++++ ..|.+.|++...+..++
T Consensus 352 v~~~~~~~~~P~~d~~~~s~G~~y~~~~~----------~~id~ay~y~~~~~~~~ 397 (427)
T 3pgu_A 352 VPAQNRSISIPDQDRFWLSAGTTYAFNKD----------ASVDVGVSYMHGQSVKI 397 (427)
T ss_dssp CCGGGCBTTBCCSCEEEEEEEEEEESSSS----------EEEEEEEEEEEECCEEE
T ss_pred CCcccccccccCCCCEEEEEeEEEEcCCC----------cEEEEEEEEEecCcceE
Confidence 123456888888888543 35566666666555555
No 15
>1i78_A Protease VII; integral outer membrane protein, beta barrel, HYDR; HET: BOG; 2.60A {Escherichia coli} SCOP: f.4.4.1
Probab=49.77 E-value=1.2e+02 Score=25.88 Aligned_cols=114 Identities=13% Similarity=0.153 Sum_probs=65.6
Q ss_pred EccCceEEEEEEEEEcCCCcceeeEeEEEEE--eCC----eEEEEEEcCCCCeEEEEEEEEeCCCcceeEEEEEEEeecC
Q 023854 135 VGNNSVALGTDLSFDTATGNFTKCNAGLSYT--HTD----LIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSS 208 (276)
Q Consensus 135 ~~~~~~~~G~e~~y~~~~~~~~~~~~~~~y~--~~~----~~~s~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~ 208 (276)
+..+++.+|+.+.|+....+. .+.++.|. .+. .+.+. +. .....+|-|+..- .-+|....|...
T Consensus 121 l~~~~~~lg~~~Gy~y~~~~w--~A~gG~~~Y~~~~~~~~~~~~~---P~-~~~~I~Y~Q~~~~---pyiGL~g~y~~~- 190 (297)
T 1i78_A 121 LNEPNYRLGLMAGYQESRYSF--TARGGSYIYSSEEGFRDDIGSF---PN-GERAIGYKQRFKM---PYIGLTGSYRYE- 190 (297)
T ss_dssp EECSSEEEEEEEEEEEEEEEE--EEECCEEEBCCTTCSSCBCCBC---CT-TCSEEEEEEEEEE---EEEEEEEEEEET-
T ss_pred ecCCceEEeEEcccEEEeeee--eecCceEEcCCCCccccccccc---CC-CccceeEEEEEEe---eeeeEEEEEeeC-
Confidence 368888899999887653332 23333332 221 11111 22 2456788888742 256666666654
Q ss_pred CceEEEEEEEEe-----------eC--CCCeEEEEEcCCc--eEEEEEEEEecCCeEEEEEEEEec
Q 023854 209 NENTLTIGTQHA-----------LD--PLTSVKARVNNYG--RASALIQHEWRPKSLFTISGEVDT 259 (276)
Q Consensus 209 ~~~~~~vG~~y~-----------ld--~~~~~Kakvds~g--~v~~~~~~~l~~~~~l~ls~~~d~ 259 (276)
.-.+.+..+|. +. ++.++|=+.++-. .+++.+...|.|++++-+.+....
T Consensus 191 -~~~l~~~~~~s~~v~a~~~D~H~~~rr~l~F~d~~~~~~~~~~~~~~~Y~ltp~~sl~~e~~y~~ 255 (297)
T 1i78_A 191 -DFELGGTFKYSGWVESSDNDEHYDPKGRITYRSKVKDQNYYSVAVNAGYYVTPNAKVYVEGAWNR 255 (297)
T ss_dssp -TEEEEEEEEEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred -cEEEEEEEecceeEEEeecchhhcccCCCcceeccCCCceEEEEEEEEEecCCCEEEEEEEEEEe
Confidence 23344433332 22 5666666666522 266777788888888888887775
No 16
>1pho_A Phosphoporin; outer membrane protein; 3.00A {Escherichia coli} SCOP: f.4.3.1
Probab=49.54 E-value=1.2e+02 Score=25.69 Aligned_cols=65 Identities=5% Similarity=-0.062 Sum_probs=41.1
Q ss_pred ceEEEEEEEEeeCCCCeEEEE-----Ec---------CCceEEEEEEEEecCCeEEEEEEEEeccc------cCCCCeeE
Q 023854 210 ENTLTIGTQHALDPLTSVKAR-----VN---------NYGRASALIQHEWRPKSLFTISGEVDTRA------IEKSAKIG 269 (276)
Q Consensus 210 ~~~~~vG~~y~ld~~~~~Kak-----vd---------s~g~v~~~~~~~l~~~~~l~ls~~~d~~~------~~~~~K~G 269 (276)
...+.+|++|.+.+...+.+- .+ ..-.+.+.+++.|+|...+-+....+..+ ...+.-++
T Consensus 244 ~~~~~~ga~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~lg~~Y~LSKrT~lY~~y~~~~~~~~~~~~~~~~~~~~ 323 (330)
T 1pho_A 244 TQNFEAVAQYQFDFGLRPSLGYVLSKGKDIEGIGDEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNKLNINNDDIVA 323 (330)
T ss_dssp EEEEEEEEEECCSSSEEEEEEEEEEEEESBTTTBCCEEEEEEEEEEEEESSSSEEEEEEEEEECCCSSCTTCCCCCCEEE
T ss_pred eEEEEEEEEEeecCCeeEEEEEEEecccCccCCCCcceEEEEEEEEEEEecCCEEEEEEEEEccccCccccCCCCCcEEE
Confidence 456788888888666555542 21 11357788899999998887765553321 11235777
Q ss_pred EEEEE
Q 023854 270 LALAL 274 (276)
Q Consensus 270 ~~l~~ 274 (276)
+||..
T Consensus 324 vGirh 328 (330)
T 1pho_A 324 VGMTY 328 (330)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77764
No 17
>3qra_A AIL, attachment invasion locus protein; beta-barrel protein, attachment and invasion virulence, LAMI heparin, cell invasion; HET: C8E; 1.80A {Yersinia pestis} SCOP: f.4.1.0 PDB: 3qrc_A*
Probab=40.09 E-value=1.2e+02 Score=22.98 Aligned_cols=23 Identities=22% Similarity=0.023 Sum_probs=17.0
Q ss_pred ceEEEEEEEEecCCeEEEEEEEE
Q 023854 235 GRASALIQHEWRPKSLFTISGEV 257 (276)
Q Consensus 235 g~v~~~~~~~l~~~~~l~ls~~~ 257 (276)
..+++.+|..+.|++.+.+.-+.
T Consensus 116 ~~~GaGvey~~~~n~~~~~eY~y 138 (157)
T 3qra_A 116 LAYGAGLQFNPHPNFVIDASYEY 138 (157)
T ss_dssp EEEEEEEEECSSTTEEEEEEEEE
T ss_pred eEEEEEEEEEecCCEEEEEEEEE
Confidence 44777888888888888776655
No 18
>2lme_A Adhesin YADA; trimeric autotransporter, membrane protein, cell adhesion; NMR {Yersinia enterocolitica subsp}
Probab=39.92 E-value=54 Score=23.40 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=20.7
Q ss_pred eeEEEEEEEeecCCceEEEEEEEEeeCCCCeEEEEEc
Q 023854 196 TAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVN 232 (276)
Q Consensus 196 ~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~~~Kakvd 232 (276)
+.+++=+.. -..+..++||+.|.++++..+|+.+.
T Consensus 54 ~~v~~g~G~--y~g~~AvAvG~~~~~n~~~~~~~~~s 88 (105)
T 2lme_A 54 VNFTAGVGG--YRSSQALAIGSGYRVNESVALKAGVA 88 (105)
T ss_dssp EEEEEEEEE--ETTEEEEEEEEEEEESSSBCCEEEEE
T ss_pred EEEEEEEec--cCCceEEEEEEEEEeCCCEEEEEEEE
Confidence 444443333 24667777777777766666665543
No 19
>2fgq_X OMP32, outer membrane porin protein 32; malate, outer membrane protein, membrane protein; HET: BOG; 1.45A {Delftia acidovorans} SCOP: f.4.3.1 PDB: 2fgr_A 1e54_A
Probab=38.74 E-value=1.8e+02 Score=24.74 Aligned_cols=101 Identities=13% Similarity=0.066 Sum_probs=60.0
Q ss_pred eeeEeEEEEEeCCeEEEEEEcC----------CCCeEEEEEEEEeCCCcceeEEEEEEEeec-------CCceEEEEEEE
Q 023854 156 TKCNAGLSYTHTDLIASLTLND----------KGDTLNASYYHIVSPLTNTAVGAELTHSFS-------SNENTLTIGTQ 218 (276)
Q Consensus 156 ~~~~~~~~y~~~~~~~s~~~~~----------~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~-------~~~~~~~vG~~ 218 (276)
..|.+++.|....+.+.+-... +.+.+.+.--.++.+ +.+++....... .+...+.+|++
T Consensus 170 ~~~~~~~~Y~~g~~~~~~~Y~~~~~~~~~~~~~~~~~~~g~~Y~~g~---~~l~~~Y~~~~~~~~~~~~~~~~~~~~ga~ 246 (332)
T 2fgq_X 170 RYIGGYVAYDNGPLSASLGLAQQKTAVGGLATDRDEITLGASYNFGV---AKLSGLLQQTKFKRDIGGDIKTNSYMLGAS 246 (332)
T ss_dssp CEEEEEEEEECSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEEECSS---CEEEEEEEEEEEEETTSCEEEEEEEEEEEE
T ss_pred cEEEEEEEEecCCEEEEEEEEEEecCCCCcccceEEEEEEEEEEECC---EEEEEEEEEEEccCCCCCcceeeEEEEEEE
Confidence 4577788887777666554321 011222333334543 355554443221 13456889999
Q ss_pred EeeCCCCeEEEEEcC---------CceEEEEEEEEecCCeEEEEEEEEec
Q 023854 219 HALDPLTSVKARVNN---------YGRASALIQHEWRPKSLFTISGEVDT 259 (276)
Q Consensus 219 y~ld~~~~~Kakvds---------~g~v~~~~~~~l~~~~~l~ls~~~d~ 259 (276)
|.+.+...+++-... .-.+.+.+++.|++...+-+......
T Consensus 247 y~~t~~~~~~~~y~~~~~~~~~~~~~~~~lg~~Y~LSKrT~lY~~~~~~~ 296 (332)
T 2fgq_X 247 APVGGVGEVKLQYALYDQKAIDSKAHQITLGYVHNLSKRTALYGNLAFLK 296 (332)
T ss_dssp EEETTTEEEEEEEEEEEEGGGTEEEEEEEEEEEEESSSSEEEEEEEEEEE
T ss_pred EEecCceEEEEEEEEEccCCCCCCeEEEEEEEEEccccchHheeeeeeEe
Confidence 999777777765321 13577889999999988877665544
No 20
>3vy8_X Outer membrane protein; beta-barrel, porin, channel; 2.12A {Neisseria meningitidis} PDB: 3a2r_X* 3a2t_X* 3a2u_X* 3a2s_X 3vy9_X 3vzt_X 3vzw_X*
Probab=37.81 E-value=2e+02 Score=24.99 Aligned_cols=42 Identities=14% Similarity=0.161 Sum_probs=22.3
Q ss_pred EEEEEcC-CCCCceEEEEEEccC---C-----------CCceEEEEEeecceeeeEE
Q 023854 79 TTITVDE-PAPGLKSIFSFIVPD---Q-----------RSGKVELQYQHEYAGISTG 120 (276)
Q Consensus 79 ~~~~~~~-~~~glk~~~~~~~~~---~-----------~~~~~~~~y~~~~~~~~~~ 120 (276)
-.|.++. -..|+++.+..++.+ . ..--+.+.|.+..+.+.+.
T Consensus 146 n~v~Y~sp~f~G~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~g~~~~~~a 202 (355)
T 3vy8_X 146 ISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYA 202 (355)
T ss_dssp EEEEEECCCBTTEEEEEEEECHHHHCSTTTTSCCSCCCCEEEEEEEEEETTEEEEEE
T ss_pred EEEEEECCccCCEEEEEEEEcCCCCCCccccccccCCCcEEEEEEEEecCCEEEEEE
Confidence 4566654 345777766665411 1 1123566777666555443
No 21
>2zfg_A Outer membrane protein F; OMPF porin, ordered waters, ION transport, phage recognition, transmembrane, transport; HET: C8E; 1.59A {Escherichia coli} SCOP: f.4.3.1 PDB: 1opf_A* 2omf_A* 2zld_A 3k19_A 3k1b_A 3o0e_A* 3poq_A* 3pou_A* 3pox_A* 3hw9_A* 3hwb_A* 1hxx_A 3fyx_A* 1bt9_A 1mpf_A* 1gfq_A* 1gfp_A* 1gfm_A* 1gfo_A* 1hxu_A ...
Probab=36.45 E-value=2e+02 Score=24.53 Aligned_cols=65 Identities=3% Similarity=-0.068 Sum_probs=42.2
Q ss_pred ceEEEEEEEEeeCCCCeEEEE-----Ec---------CCceEEEEEEEEecCCeEEEEEEEEeccc------cCCCCeeE
Q 023854 210 ENTLTIGTQHALDPLTSVKAR-----VN---------NYGRASALIQHEWRPKSLFTISGEVDTRA------IEKSAKIG 269 (276)
Q Consensus 210 ~~~~~vG~~y~ld~~~~~Kak-----vd---------s~g~v~~~~~~~l~~~~~l~ls~~~d~~~------~~~~~K~G 269 (276)
...+.+|++|.+.+...+.+- .+ ..-.+.+.+++.|++...+-+....+..+ ...+.-++
T Consensus 254 ~~~~~~ga~y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~lg~~Y~lSKrT~lY~~~~~~~~~~~~~~~~~~~~~~~ 333 (340)
T 2zfg_A 254 TQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVA 333 (340)
T ss_dssp EEEEEEEEEECCTTSEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEEEETTEEEEEEEEEECCCTTCTTCCCCBCEEE
T ss_pred EEEEEEEEEEEecCCeeEEEEEEEEeccccCCCCCcceEEEEEEEEEEEecCCeEEEEEEEEeccCCccccCCCCCcEEE
Confidence 456888999999776555542 11 11367888999999998887776654321 11234677
Q ss_pred EEEEE
Q 023854 270 LALAL 274 (276)
Q Consensus 270 ~~l~~ 274 (276)
+||..
T Consensus 334 vGirh 338 (340)
T 2zfg_A 334 VGIVY 338 (340)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77764
No 22
>3vy8_X Outer membrane protein; beta-barrel, porin, channel; 2.12A {Neisseria meningitidis} PDB: 3a2r_X* 3a2t_X* 3a2u_X* 3a2s_X 3vy9_X 3vzt_X 3vzw_X*
Probab=34.72 E-value=2.3e+02 Score=24.66 Aligned_cols=45 Identities=7% Similarity=0.135 Sum_probs=32.3
Q ss_pred ceEEEEEEEEeeCCCCeEEEEE--------cC-------CceEEEEEEEEecCCeEEEEEE
Q 023854 210 ENTLTIGTQHALDPLTSVKARV--------NN-------YGRASALIQHEWRPKSLFTISG 255 (276)
Q Consensus 210 ~~~~~vG~~y~ld~~~~~Kakv--------ds-------~g~v~~~~~~~l~~~~~l~ls~ 255 (276)
...++++++|.+++ .++++.. +. .-.+.+.+.+.|++++++-+..
T Consensus 271 ~~~~~l~a~Y~~g~-~~~~~sY~~~~k~k~~~~~~~~~~~~~~~vG~~Y~lsKrt~~Ya~y 330 (355)
T 3vy8_X 271 QTQVAATAAYRFGN-VTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSA 330 (355)
T ss_dssp EEEEEEEEEECBTT-EEEEEEEEEECCEEETTEEEGGGCEEEEEEEEEEESSSSEEEEEEE
T ss_pred eeEEEEEEEEEcCC-eEEEEEEEEeccccccccccCCCcceEEEEEEEEEcCCCeEEEEEE
Confidence 45788999999955 5555433 21 2258899999999998877765
No 23
>2lme_A Adhesin YADA; trimeric autotransporter, membrane protein, cell adhesion; NMR {Yersinia enterocolitica subsp}
Probab=33.12 E-value=72 Score=22.73 Aligned_cols=38 Identities=0% Similarity=-0.135 Sum_probs=27.4
Q ss_pred ceEEEEEEEEecCCeEEEEEEEEeccccCCCCeeEEEEEEc
Q 023854 235 GRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALK 275 (276)
Q Consensus 235 g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G~~l~~~ 275 (276)
.-+++.+.++.++++.+.+++.++. .++.-+|.|+.++
T Consensus 67 ~AvAvG~~~~~n~~~~~~~~~s~~~---~g~~~~gaGv~~~ 104 (105)
T 2lme_A 67 QALAIGSGYRVNESVALKAGVAYAG---SSDVMYNASFNIE 104 (105)
T ss_dssp EEEEEEEEEEESSSBCCEEEEEEET---TTEEEEEEEEEEE
T ss_pred eEEEEEEEEEeCCCEEEEEEEEEcC---CCCEEEEEEEEeE
Confidence 3467777778899999999998886 4445566666553
No 24
>3nsg_A Outer membrane protein F; porin, beta barrel, beta barrel MEMB protein; HET: LDA TAM FLC TLA; 2.79A {Salmonella enterica subsp}
Probab=32.85 E-value=2.4e+02 Score=24.25 Aligned_cols=18 Identities=11% Similarity=0.073 Sum_probs=9.9
Q ss_pred EEEEEEEEeeCCCCeEEE
Q 023854 212 TLTIGTQHALDPLTSVKA 229 (276)
Q Consensus 212 ~~~vG~~y~ld~~~~~Ka 229 (276)
.+++|+.|.|.+.+.+=+
T Consensus 293 ~~~lg~~Y~LSKrT~lY~ 310 (341)
T 3nsg_A 293 YIQAGATYYFNKNMNVWV 310 (341)
T ss_dssp EEEEEEEECCCSSEEEEE
T ss_pred EEEEEEEEEecCCEEEEE
Confidence 456666666655544433
No 25
>1pho_A Phosphoporin; outer membrane protein; 3.00A {Escherichia coli} SCOP: f.4.3.1
Probab=32.22 E-value=2.3e+02 Score=23.86 Aligned_cols=72 Identities=13% Similarity=0.053 Sum_probs=39.9
Q ss_pred eeeEeEEEEEeCCeEEEEEEcC-------------CCCeEEEEEEEEeCCCcceeEEEEEEEeec---------CCceEE
Q 023854 156 TKCNAGLSYTHTDLIASLTLND-------------KGDTLNASYYHIVSPLTNTAVGAELTHSFS---------SNENTL 213 (276)
Q Consensus 156 ~~~~~~~~y~~~~~~~s~~~~~-------------~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~---------~~~~~~ 213 (276)
..|.+++.|.-..+.+.+.... +.+.+.+..-+++.+. +.+++...+... .+...+
T Consensus 208 ~~~~~g~~Y~~g~~~l~a~Y~~~~~~~~~~~~~~~~~~~~~~ga~Y~~~~~--~~~~~~y~~~~~~~~~~~~~~~~~~~~ 285 (330)
T 1pho_A 208 EAWATGLKYDANNIYLATFYSETRKMTPITGGFANKTQNFEAVAQYQFDFG--LRPSLGYVLSKGKDIEGIGDEDLVNYI 285 (330)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEESCSCCSSSSCSEEEEEEEEEEECCSSS--EEEEEEEEEEEEESBTTTBCCEEEEEE
T ss_pred heEEEEEEEEeCCEEEEEEEEeeEEccCCCCCcceeeEEEEEEEEEeecCC--eeEEEEEEEecccCccCCCCcceEEEE
Confidence 4566777777666665554321 0122344444566666 455554443321 123467
Q ss_pred EEEEEEeeCCCCeEEE
Q 023854 214 TIGTQHALDPLTSVKA 229 (276)
Q Consensus 214 ~vG~~y~ld~~~~~Ka 229 (276)
.+|+.|.|.+.+.+=+
T Consensus 286 ~lg~~Y~LSKrT~lY~ 301 (330)
T 1pho_A 286 DVGATYYFNKNMSAFV 301 (330)
T ss_dssp EEEEEEESSSSEEEEE
T ss_pred EEEEEEEecCCEEEEE
Confidence 8888888877766654
No 26
>2fgq_X OMP32, outer membrane porin protein 32; malate, outer membrane protein, membrane protein; HET: BOG; 1.45A {Delftia acidovorans} SCOP: f.4.3.1 PDB: 2fgr_A 1e54_A
Probab=31.87 E-value=2.4e+02 Score=24.00 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=10.8
Q ss_pred eEEEEEEEEeeCCCCeEEE
Q 023854 211 NTLTIGTQHALDPLTSVKA 229 (276)
Q Consensus 211 ~~~~vG~~y~ld~~~~~Ka 229 (276)
..+.+|+.|.|.+.+.+=+
T Consensus 272 ~~~~lg~~Y~LSKrT~lY~ 290 (332)
T 2fgq_X 272 HQITLGYVHNLSKRTALYG 290 (332)
T ss_dssp EEEEEEEEEESSSSEEEEE
T ss_pred EEEEEEEEEccccchHhee
Confidence 4566666666655554443
No 27
>2vdf_A OPCA, outer membrane protein; invasin, adhesin, beta barrel; 1.95A {Neisseria meningitidis} SCOP: f.4.4.2 PDB: 1k24_A
Probab=30.64 E-value=2.3e+02 Score=23.40 Aligned_cols=14 Identities=29% Similarity=0.622 Sum_probs=5.8
Q ss_pred EEEEEeeCCCCeEE
Q 023854 215 IGTQHALDPLTSVK 228 (276)
Q Consensus 215 vG~~y~ld~~~~~K 228 (276)
+|.-|.+.|.+.+|
T Consensus 149 Lg~gw~i~Pw~e~~ 162 (253)
T 2vdf_A 149 LGNGWYINPWSEVK 162 (253)
T ss_dssp EETTEEEEEEEEEE
T ss_pred cCCCceeCcchhhh
Confidence 34444444443333
No 28
>2por_A Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} SCOP: f.4.3.1 PDB: 3por_A*
Probab=27.81 E-value=2.7e+02 Score=23.34 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=13.3
Q ss_pred eEEEEEEEEeeCCCCeEEEEE
Q 023854 211 NTLTIGTQHALDPLTSVKARV 231 (276)
Q Consensus 211 ~~~~vG~~y~ld~~~~~Kakv 231 (276)
..+.+|+.|.|.+++.+-+-+
T Consensus 261 ~~~~lg~~Y~Ls~~~~lya~y 281 (301)
T 2por_A 261 TYYGLGASYDLGGGASIVGGI 281 (301)
T ss_dssp EEEEEEEEEEEETTEEEEEEE
T ss_pred cEEEEEEEEcCCCCeEEEEEE
Confidence 456667777776666666554
No 29
>4e1s_A Intimin; outer membrane beta barrel, adhesin; HET: OLC OLB; 1.85A {Escherichia coli}
Probab=27.44 E-value=2.6e+02 Score=23.10 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=25.6
Q ss_pred cCceEEEEEEEEEcC-CCcceeeEeEEEEEeCCeEEEEE
Q 023854 137 NNSVALGTDLSFDTA-TGNFTKCNAGLSYTHTDLIASLT 174 (276)
Q Consensus 137 ~~~~~~G~e~~y~~~-~~~~~~~~~~~~y~~~~~~~s~~ 174 (276)
.++|.+|+.+.||.. +....+..+|+-|-.+.+.+++.
T Consensus 60 ~~~~m~G~N~FyD~d~~~~h~R~glG~E~~~d~l~lsaN 98 (242)
T 4e1s_A 60 LPANMLGYNVFIDQDFSGDNTRLGIGGEYWRDYFKSSVN 98 (242)
T ss_dssp CSSCEEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEE
T ss_pred cCCeEEEeEEEEeccCCCCceeEEeEEEEEecceEEEEE
Confidence 467888999888865 33456777777776665555544
No 30
>3prn_A Porin; integral membrane protein, pore eyelet mutant, membra protein; HET: C8E; 1.90A {Rhodobacter blasticus} SCOP: f.4.3.1 PDB: 1bh3_A* 1prn_A* 7prn_A* 6prn_A* 5prn_A* 2prn_A* 8prn_A* 1h6s_1
Probab=25.96 E-value=3.1e+02 Score=23.35 Aligned_cols=127 Identities=13% Similarity=0.102 Sum_probs=75.6
Q ss_pred eEEEEEeecceeeeEEEecCC--------CCeEEEEEEEccCceEEEEEEEEEcCC-CcceeeEeEEEEEeC-CeEEEEE
Q 023854 105 KVELQYQHEYAGISTGIGFTA--------NPIVNFSGVVGNNSVALGTDLSFDTAT-GNFTKCNAGLSYTHT-DLIASLT 174 (276)
Q Consensus 105 ~~~~~y~~~~~~~~~~~~~~~--------~p~~~~s~v~~~~~~~~G~e~~y~~~~-~~~~~~~~~~~y~~~-~~~~s~~ 174 (276)
-+.++|.-..|.+..+..... ...+...+.+....+.+++-..-|... .....|-++++|.-. .+.+.+.
T Consensus 132 ~l~~~ys~Ggfs~~~Sy~~~~~~~~~~~~~d~~~l~a~Yt~g~~~v~aaY~~d~ag~~D~~~~~l~~~y~fG~~~~v~~~ 211 (289)
T 3prn_A 132 GIAVTYSISGVNLYLSYVDPDQTVDSSLVTEEFGIAADWSNDMISLAAAYTTDAGGIVDNDIAFVGAAYKFNDAGTVGLN 211 (289)
T ss_dssp EEEEEEECSSEEEEEEEEETTTTSCGGGSCCEEEEEEEEECSSEEEEEEEEESGGGCTTCCEEEEEEEECCSSSEEEEEE
T ss_pred eEEEEEEecCEEEEEEEEccCCCcccccccceEEEEEEEecCCEEEEEEEeccCCCCCCccEEEEEEEEEcCCCeEEEEE
Confidence 356666666655555554331 123444444445555555543311111 112468888888888 8888887
Q ss_pred EcCC-----CCeEEEEEEEEeCCCcceeEEEEEE-EeecCCceEEEEEEEEeeCCCCeEEEEEcCC
Q 023854 175 LNDK-----GDTLNASYYHIVSPLTNTAVGAELT-HSFSSNENTLTIGTQHALDPLTSVKARVNNY 234 (276)
Q Consensus 175 ~~~~-----~~~~~~Sy~~kv~~~~~~~~g~e~~-~~~~~~~~~~~vG~~y~ld~~~~~Kakvds~ 234 (276)
..++ .+.+.++.=.++ .. +.+.+-+. .......+.+.||++|.|-..+++++-+...
T Consensus 212 Y~d~~d~~~~~~~gl~~~Y~v-~a--~tv~a~y~D~~~~~~~t~yGIg~~YDLGgGasl~~gy~~~ 274 (289)
T 3prn_A 212 WYDNGLSTAGDQVTLYGNYAF-GA--TTVRAYVSDIDRAGADTAYGIGADYQFAEGVKVSGSVQSG 274 (289)
T ss_dssp EEECTTSTTCSEEEEEEEEEE-TT--EEEEEEEEEECSTTCCCEEEEEEEEEEETTEEEEEEEEEC
T ss_pred EEccccccCCceEEEEEEeEe-cC--eEEEEEEeccccCCCcceEEEEEEecCCCCeEEEEEEEEc
Confidence 7653 346667777777 43 34444433 2123467789999999998899888877644
No 31
>3bry_A TBUX; beta barrel, outer membrane protein, transport protein; HET: C8E; 3.20A {Ralstonia pickettii}
Probab=23.81 E-value=3.7e+02 Score=23.62 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=6.0
Q ss_pred cCceEEEEEEEE
Q 023854 137 NNSVALGTDLSF 148 (276)
Q Consensus 137 ~~~~~~G~e~~y 148 (276)
.++|.+++++.|
T Consensus 290 ~~~~~l~~d~~~ 301 (441)
T 3bry_A 290 NDQLSVSADYQR 301 (441)
T ss_dssp SSSEEEEEEEEE
T ss_pred CCCEEEEEEEEE
Confidence 445555555544
No 32
>3aeh_A Hemoglobin-binding protease HBP autotransporter; beta-barrel, auto-proteolytic, reaction intermediate, mutant membrane, cell outer membrane; 2.00A {Escherichia coli}
Probab=23.13 E-value=2.9e+02 Score=23.03 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=11.5
Q ss_pred eEEEEEEEEeeCCCCeEEEEE
Q 023854 211 NTLTIGTQHALDPLTSVKARV 231 (276)
Q Consensus 211 ~~~~vG~~y~ld~~~~~Kakv 231 (276)
..+.+|..+++.++..+-+.+
T Consensus 264 ~~~g~G~~~~l~~~~~l~~~~ 284 (308)
T 3aeh_A 264 MLYGVGLNARFGDNTRLGLEV 284 (308)
T ss_dssp EEEEEEEEEEETTTEEEEEEE
T ss_pred EEEEEEEEEEECCCEEEEEEE
Confidence 345666666665555554444
No 33
>4e1t_A Invasin; outer membrane beta barrel, adhesin, integrin, cell adhesion; HET: OLC OLB; 2.26A {Yersinia pseudotuberculosis}
Probab=20.87 E-value=3.6e+02 Score=22.33 Aligned_cols=38 Identities=18% Similarity=0.182 Sum_probs=25.7
Q ss_pred cCceEEEEEEEEEcC-CCcceeeEeEEEEEeCCeEEEEE
Q 023854 137 NNSVALGTDLSFDTA-TGNFTKCNAGLSYTHTDLIASLT 174 (276)
Q Consensus 137 ~~~~~~G~e~~y~~~-~~~~~~~~~~~~y~~~~~~~s~~ 174 (276)
.++|.+|+.+.||.. +....+..+|+-|-.+.+.+++.
T Consensus 63 ~~~wm~G~N~FyD~d~t~~h~R~glG~E~~~d~l~lsaN 101 (245)
T 4e1t_A 63 ENGWLYGLNTFYDNDLTGHNHRIGLGAEAWTDYLQLAAN 101 (245)
T ss_dssp ETTEEEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEE
T ss_pred cCCEEEEeEEEEecCCCCCCceeEeEEEEEeCceEEEEE
Confidence 378999999998865 33456777777776665555544
No 34
>2j1n_A Outer membrane protein C; transport protein, beta-barrel, ION transport, osmoporin; HET: D12; 2.0A {Escherichia coli} PDB: 2j4u_P 2zle_D 3nb3_D 4a8d_M 2ixx_A* 2xe1_A* 2xe2_A* 2ixw_A* 2xe5_A* 2xe3_A* 2xg6_A 1osm_A*
Probab=20.67 E-value=3.9e+02 Score=22.66 Aligned_cols=135 Identities=7% Similarity=0.066 Sum_probs=0.0
Q ss_pred CceEEEEEEEEEcC-------------------CCcceeeEeEEEEEeCCeEEEEEEc-----------------CCCCe
Q 023854 138 NSVALGTDLSFDTA-------------------TGNFTKCNAGLSYTHTDLIASLTLN-----------------DKGDT 181 (276)
Q Consensus 138 ~~~~~G~e~~y~~~-------------------~~~~~~~~~~~~y~~~~~~~s~~~~-----------------~~~~~ 181 (276)
.+|.+++.....-. ...-..|.+++.|....+.+.+-.. ...+.
T Consensus 141 ~G~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Y~~g~l~~~a~Y~~~~~~~~~~~~~~~~~~~~~~~ 220 (346)
T 2j1n_A 141 DGLNFAVQYQGKNGNPSGEGFTSGVTNNGRDALRQNGDGVGGSITYDYEGFGIGGAISSSKRTDAQNTAAYIGNGDRAET 220 (346)
T ss_dssp TTEEEEEEEECCBCBCSSSCCCSSBCTTCCCGGGCBCCEEEEEEEEEETTEEEEEEEEEEECCTTTSSTTSBCCCSEEEE
T ss_pred CCEEEEEEEEecCCCccccccccccccCCcccccccCceEEEEEEEEeCCEEEEEEEEEecCcccccccccccccccceE
Q ss_pred EEEEEEEEeCCCcceeEEEEEEEee----------cCCceEEEEEEEEeeCCCCeEEEEE------------cCCc---e
Q 023854 182 LNASYYHIVSPLTNTAVGAELTHSF----------SSNENTLTIGTQHALDPLTSVKARV------------NNYG---R 236 (276)
Q Consensus 182 ~~~Sy~~kv~~~~~~~~g~e~~~~~----------~~~~~~~~vG~~y~ld~~~~~Kakv------------ds~g---~ 236 (276)
+.+.--+++.+- .+++...... ..+...+.+|++|.+.+...+.+-. .+.. .
T Consensus 221 ~~~g~~Y~~g~~---~l~a~Y~~~~~~~~~~~~~~~~~~~~~~~~a~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 297 (346)
T 2j1n_A 221 YTGGLKYDANNI---YLAAQYTQTYNATRVGSLGWANKAQNFEAVAQYQFDFGLRPSLAYLQSKGKNLGRGYDDEDILKY 297 (346)
T ss_dssp EEEEEEEEETTE---EEEEEEEEEESCSBCTTSBBCSEEEEEEEEEEECCTTSEEEEEEEEEEEEESCSTTCCSEEEEEE
T ss_pred EEEEEEEeeCCE---EEEEEEeeeEeccccCccccceEEEEEEEEEEEEEecCeEEEEEEEEEeccccccccCCcceEEE
Q ss_pred EEEEEEEEecCCeEEEEEEEEeccccC---------CCCeeEEEEEEc
Q 023854 237 ASALIQHEWRPKSLFTISGEVDTRAIE---------KSAKIGLALALK 275 (276)
Q Consensus 237 v~~~~~~~l~~~~~l~ls~~~d~~~~~---------~~~K~G~~l~~~ 275 (276)
+.+.+++.|++...+-+.......+-. .+.-+++||..+
T Consensus 298 ~~lg~~Y~lSKrt~lY~~~~~~~~~~~~~~~~~~~~~~~~~~vGirh~ 345 (346)
T 2j1n_A 298 VDVGATYYFNKNMSTYVDYKINLLDDNQFTRDAGINTDNIVALGLVYQ 345 (346)
T ss_dssp EEEEEEEESSSSEEEEEEEEEECCCCCHHHHHHTCCCSCEEEEEEEEE
T ss_pred EEEEEEEEecCCeEEEEEEEEEeccCCcccccCCCCcCcEEEEEEEEE
Done!