Query 023855
Match_columns 276
No_of_seqs 332 out of 2167
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 07:08:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023855.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023855hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0648 Predicted NUDIX hydrol 100.0 3.8E-44 8.1E-49 309.7 13.8 261 13-274 19-282 (295)
2 cd04670 Nudix_Hydrolase_12 Mem 99.9 1.2E-22 2.5E-27 159.5 15.0 116 107-225 1-116 (127)
3 cd04679 Nudix_Hydrolase_20 Mem 99.9 2E-21 4.3E-26 152.1 13.2 114 107-223 1-116 (125)
4 PRK00714 RNA pyrophosphohydrol 99.9 1.7E-20 3.7E-25 152.7 15.9 129 106-238 6-151 (156)
5 cd03671 Ap4A_hydrolase_plant_l 99.9 1.2E-20 2.6E-25 152.0 14.7 126 107-236 2-145 (147)
6 cd03430 GDPMH GDP-mannose glyc 99.9 2.4E-20 5.1E-25 149.9 14.8 116 105-224 9-134 (144)
7 PRK09438 nudB dihydroneopterin 99.9 1.2E-20 2.6E-25 152.1 13.0 112 107-225 6-132 (148)
8 PLN02325 nudix hydrolase 99.8 2E-20 4.3E-25 150.3 14.0 119 103-224 4-127 (144)
9 PRK15434 GDP-mannose mannosyl 99.8 4.1E-20 9E-25 150.4 15.1 114 106-223 15-138 (159)
10 cd04678 Nudix_Hydrolase_19 Mem 99.8 3.6E-20 7.8E-25 145.7 14.1 115 107-223 1-118 (129)
11 cd04680 Nudix_Hydrolase_21 Mem 99.8 2.8E-20 6E-25 144.2 13.0 109 110-225 2-111 (120)
12 cd03424 ADPRase_NUDT5 ADP-ribo 99.8 3.5E-20 7.5E-25 147.3 13.8 118 107-225 1-118 (137)
13 cd04700 DR1025_like DR1025 fro 99.8 6.6E-20 1.4E-24 146.9 14.5 117 106-225 11-128 (142)
14 cd04684 Nudix_Hydrolase_25 Con 99.8 6.7E-20 1.5E-24 143.4 14.0 113 110-225 2-120 (128)
15 cd03673 Ap6A_hydrolase Diadeno 99.8 5.4E-20 1.2E-24 144.5 13.5 118 109-233 2-128 (131)
16 PF00293 NUDIX: NUDIX domain; 99.8 3.5E-20 7.6E-25 145.7 12.3 119 107-225 1-122 (134)
17 cd04681 Nudix_Hydrolase_22 Mem 99.8 6.9E-20 1.5E-24 144.1 12.9 107 110-220 3-113 (130)
18 cd04669 Nudix_Hydrolase_11 Mem 99.8 1.5E-19 3.3E-24 140.8 14.2 109 110-225 2-117 (121)
19 cd03674 Nudix_Hydrolase_1 Memb 99.8 1.4E-19 3E-24 144.3 14.2 119 109-233 3-135 (138)
20 PRK15472 nucleoside triphospha 99.8 1.8E-19 3.8E-24 144.1 14.9 115 110-225 5-128 (141)
21 cd04682 Nudix_Hydrolase_23 Mem 99.8 9.2E-20 2E-24 142.1 12.6 112 111-224 4-116 (122)
22 cd04673 Nudix_Hydrolase_15 Mem 99.8 1.5E-19 3.2E-24 140.4 13.5 111 109-225 1-117 (122)
23 cd04697 Nudix_Hydrolase_38 Mem 99.8 1.4E-19 3.1E-24 142.0 12.5 112 110-224 2-114 (126)
24 cd04696 Nudix_Hydrolase_37 Mem 99.8 2.4E-19 5.3E-24 140.3 13.6 111 108-225 2-117 (125)
25 cd03675 Nudix_Hydrolase_2 Cont 99.8 4.5E-19 9.8E-24 140.3 15.2 127 110-241 2-130 (134)
26 cd04683 Nudix_Hydrolase_24 Mem 99.8 2.9E-19 6.4E-24 138.6 13.6 112 110-224 2-116 (120)
27 PRK10546 pyrimidine (deoxy)nuc 99.8 7E-19 1.5E-23 139.3 15.9 123 110-237 5-128 (135)
28 cd04677 Nudix_Hydrolase_18 Mem 99.8 1.9E-19 4E-24 141.9 12.3 112 107-225 6-125 (132)
29 cd04691 Nudix_Hydrolase_32 Mem 99.8 3.1E-19 6.7E-24 138.3 13.1 108 111-224 3-110 (117)
30 cd03426 CoAse Coenzyme A pyrop 99.8 2.6E-19 5.5E-24 145.9 13.2 114 110-224 4-120 (157)
31 cd03427 MTH1 MutT homolog-1 (M 99.8 5.6E-19 1.2E-23 140.2 14.6 119 111-235 4-125 (137)
32 cd03672 Dcp2p mRNA decapping e 99.8 1.7E-19 3.7E-24 145.0 11.3 109 110-224 3-113 (145)
33 PRK11762 nudE adenosine nucleo 99.8 2.3E-19 5.1E-24 150.0 12.6 115 109-225 48-162 (185)
34 cd04687 Nudix_Hydrolase_28 Mem 99.8 6.6E-19 1.4E-23 138.4 14.0 113 109-225 2-124 (128)
35 PRK10776 nucleoside triphospha 99.8 1.6E-18 3.6E-23 135.6 15.9 120 110-234 6-126 (129)
36 cd03429 NADH_pyrophosphatase N 99.8 5.9E-19 1.3E-23 139.5 13.4 123 110-239 2-129 (131)
37 cd04671 Nudix_Hydrolase_13 Mem 99.8 7.2E-19 1.6E-23 137.5 13.7 109 110-224 2-111 (123)
38 cd04672 Nudix_Hydrolase_14 Mem 99.8 9.9E-19 2.2E-23 136.5 13.7 109 108-225 2-115 (123)
39 COG1051 ADP-ribose pyrophospha 99.8 1.8E-18 3.9E-23 138.9 14.8 117 105-225 7-125 (145)
40 cd04676 Nudix_Hydrolase_17 Mem 99.8 1.4E-18 3.1E-23 135.7 13.7 111 108-225 2-120 (129)
41 cd04699 Nudix_Hydrolase_39 Mem 99.8 8.9E-19 1.9E-23 137.2 12.4 114 109-225 2-117 (129)
42 cd04511 Nudix_Hydrolase_4 Memb 99.8 1.9E-18 4.1E-23 136.3 13.7 112 102-221 7-118 (130)
43 TIGR00586 mutt mutator mutT pr 99.8 5.1E-18 1.1E-22 132.9 16.0 119 109-232 5-124 (128)
44 PRK15393 NUDIX hydrolase YfcD; 99.8 2.2E-18 4.8E-23 143.4 14.6 113 108-223 37-150 (180)
45 PRK00241 nudC NADH pyrophospha 99.8 2.5E-18 5.4E-23 150.3 15.5 132 100-241 124-255 (256)
46 cd04693 Nudix_Hydrolase_34 Mem 99.8 9.7E-19 2.1E-23 137.2 11.2 111 110-224 2-115 (127)
47 cd04664 Nudix_Hydrolase_7 Memb 99.8 1.4E-18 3.1E-23 136.6 12.0 111 110-225 3-121 (129)
48 cd04692 Nudix_Hydrolase_33 Mem 99.8 1.8E-18 4E-23 138.8 12.1 115 109-223 3-128 (144)
49 cd03425 MutT_pyrophosphohydrol 99.8 7E-18 1.5E-22 130.6 14.9 116 111-231 4-120 (124)
50 cd04688 Nudix_Hydrolase_29 Mem 99.8 4.5E-18 9.8E-23 133.2 13.8 110 110-225 3-121 (126)
51 cd04689 Nudix_Hydrolase_30 Mem 99.8 3.8E-18 8.2E-23 133.4 13.3 109 109-223 2-115 (125)
52 cd04690 Nudix_Hydrolase_31 Mem 99.8 3.2E-18 7E-23 132.3 12.8 106 111-225 3-113 (118)
53 PLN03143 nudix hydrolase; Prov 99.8 2.1E-17 4.5E-22 145.8 18.2 219 3-225 21-268 (291)
54 cd03428 Ap4A_hydrolase_human_l 99.8 4E-18 8.6E-23 134.0 12.2 109 109-225 3-118 (130)
55 cd04686 Nudix_Hydrolase_27 Mem 99.8 5.1E-18 1.1E-22 134.1 12.7 107 110-222 2-119 (131)
56 cd04695 Nudix_Hydrolase_36 Mem 99.8 5.1E-18 1.1E-22 134.0 12.6 114 117-235 11-128 (131)
57 cd04666 Nudix_Hydrolase_9 Memb 99.8 1.2E-17 2.5E-22 130.5 13.4 108 110-224 2-117 (122)
58 cd04694 Nudix_Hydrolase_35 Mem 99.8 1.1E-17 2.3E-22 134.1 13.1 114 109-222 2-131 (143)
59 cd04667 Nudix_Hydrolase_10 Mem 99.8 1.4E-17 3E-22 127.8 13.0 101 112-225 4-104 (112)
60 cd02885 IPP_Isomerase Isopente 99.8 7.8E-18 1.7E-22 138.3 11.2 115 108-225 30-151 (165)
61 PRK03759 isopentenyl-diphospha 99.7 2.2E-17 4.7E-22 138.0 13.1 116 107-225 33-155 (184)
62 PRK10729 nudF ADP-ribose pyrop 99.7 5.3E-17 1.2E-21 137.2 15.0 120 106-225 47-174 (202)
63 PRK05379 bifunctional nicotina 99.7 3.3E-17 7.2E-22 149.2 14.7 125 107-234 202-337 (340)
64 TIGR00052 nudix-type nucleosid 99.7 2.4E-17 5.2E-22 137.6 12.3 120 106-225 42-168 (185)
65 PRK15009 GDP-mannose pyrophosp 99.7 9.9E-17 2.1E-21 134.4 14.3 120 105-225 42-169 (191)
66 cd04685 Nudix_Hydrolase_26 Mem 99.7 7.1E-17 1.5E-21 127.9 12.3 113 110-222 2-123 (133)
67 PRK10707 putative NUDIX hydrol 99.7 1.9E-16 4.2E-21 132.6 14.2 116 107-223 29-147 (190)
68 TIGR02150 IPP_isom_1 isopenten 99.7 1.1E-16 2.4E-21 130.5 12.0 114 107-225 26-145 (158)
69 cd02883 Nudix_Hydrolase Nudix 99.7 3.4E-16 7.5E-21 120.3 13.6 112 110-225 2-115 (123)
70 cd04661 MRP_L46 Mitochondrial 99.7 1.8E-16 3.9E-21 125.4 11.2 100 118-224 11-122 (132)
71 PRK08999 hypothetical protein; 99.7 1.7E-15 3.7E-20 136.6 15.5 118 110-232 7-125 (312)
72 cd03676 Nudix_hydrolase_3 Memb 99.7 1.1E-15 2.4E-20 127.2 13.1 114 109-223 33-159 (180)
73 TIGR02705 nudix_YtkD nucleosid 99.6 1.2E-14 2.5E-19 117.5 15.3 108 106-225 22-130 (156)
74 cd04665 Nudix_Hydrolase_8 Memb 99.6 5.6E-15 1.2E-19 114.5 12.9 101 110-219 2-102 (118)
75 cd04674 Nudix_Hydrolase_16 Mem 99.6 7E-15 1.5E-19 113.7 13.3 56 111-169 7-62 (118)
76 cd04662 Nudix_Hydrolase_5 Memb 99.6 1.6E-14 3.4E-19 112.4 13.7 105 110-216 2-126 (126)
77 PLN02709 nudix hydrolase 99.6 2E-14 4.2E-19 122.1 13.7 115 109-223 34-156 (222)
78 PLN02552 isopentenyl-diphospha 99.6 5.2E-14 1.1E-18 121.9 15.2 132 108-240 56-225 (247)
79 COG2816 NPY1 NTP pyrophosphohy 99.6 6.1E-15 1.3E-19 127.8 9.3 150 76-238 117-269 (279)
80 cd03670 ADPRase_NUDT9 ADP-ribo 99.5 2E-13 4.4E-18 113.4 13.9 120 111-236 37-184 (186)
81 cd04663 Nudix_Hydrolase_6 Memb 99.5 1.5E-13 3.2E-18 107.3 12.0 106 111-222 3-116 (126)
82 KOG2839 Diadenosine and diphos 99.5 2.4E-13 5.2E-18 106.0 10.1 129 105-240 6-140 (145)
83 KOG3084 NADH pyrophosphatase I 99.5 1.7E-14 3.7E-19 125.4 1.9 108 109-221 188-297 (345)
84 PLN02791 Nudix hydrolase homol 99.4 1.2E-12 2.6E-17 128.6 12.5 116 107-222 31-158 (770)
85 COG0494 MutT NTP pyrophosphohy 99.4 9.6E-12 2.1E-16 98.1 13.3 111 111-225 14-137 (161)
86 cd03431 DNA_Glycosylase_C DNA 99.3 2.3E-11 4.9E-16 93.4 12.8 102 113-225 7-108 (118)
87 KOG3041 Nucleoside diphosphate 99.3 4.3E-11 9.3E-16 97.7 12.6 112 110-222 75-194 (225)
88 KOG3069 Peroxisomal NUDIX hydr 99.1 2.2E-10 4.8E-15 96.2 8.9 114 109-222 44-163 (246)
89 COG1443 Idi Isopentenyldiphosp 99.1 3.2E-10 6.9E-15 91.1 8.0 130 108-238 33-172 (185)
90 PF14815 NUDIX_4: NUDIX domain 99.1 5.8E-10 1.3E-14 85.7 9.2 105 113-225 2-106 (114)
91 PLN02839 nudix hydrolase 99.0 3.9E-08 8.4E-13 88.8 18.0 171 34-222 147-327 (372)
92 COG4119 Predicted NTP pyrophos 98.8 7.6E-08 1.6E-12 73.4 10.3 127 109-240 4-153 (161)
93 KOG0142 Isopentenyl pyrophosph 98.4 1.2E-06 2.5E-11 72.2 6.8 131 108-239 52-203 (225)
94 PRK10880 adenine DNA glycosyla 98.0 6.9E-05 1.5E-09 68.5 10.4 105 108-225 230-334 (350)
95 KOG4195 Transient receptor pot 97.8 0.00014 3.1E-09 60.9 9.6 38 121-163 140-177 (275)
96 COG4112 Predicted phosphoester 97.6 0.0009 1.9E-08 53.5 9.8 107 112-221 65-186 (203)
97 KOG2937 Decapping enzyme compl 97.4 3.4E-05 7.3E-10 68.3 -0.6 104 110-220 84-190 (348)
98 KOG4432 Uncharacterized NUDIX 96.9 0.0018 3.8E-08 56.8 5.1 87 109-195 27-140 (405)
99 PRK13910 DNA glycosylase MutY; 96.7 0.011 2.4E-07 52.7 9.2 83 111-225 189-271 (289)
100 KOG4432 Uncharacterized NUDIX 96.6 0.011 2.3E-07 52.0 7.8 121 105-225 226-379 (405)
101 COG1194 MutY A/G-specific DNA 96.0 0.02 4.4E-07 51.7 6.7 105 99-225 226-330 (342)
102 PF13869 NUDIX_2: Nucleotide h 95.8 0.21 4.6E-06 41.5 11.5 53 108-166 43-98 (188)
103 KOG4313 Thiamine pyrophosphoki 95.4 0.4 8.7E-06 41.3 11.7 115 105-220 130-256 (306)
104 KOG1689 mRNA cleavage factor I 93.9 0.15 3.4E-06 41.2 5.6 39 120-164 84-122 (221)
105 KOG4548 Mitochondrial ribosoma 93.1 0.77 1.7E-05 39.7 8.7 99 120-224 139-249 (263)
106 TIGR01084 mutY A/G-specific ad 91.0 0.66 1.4E-05 41.2 6.4 34 109-143 227-261 (275)
107 COG4111 Uncharacterized conser 70.4 40 0.00087 29.5 8.7 72 115-195 32-108 (322)
108 PF03487 IL13: Interleukin-13; 68.3 4.8 0.0001 24.5 2.0 23 141-163 14-36 (43)
109 PF14443 DBC1: DBC1 64.1 31 0.00068 26.8 6.3 34 135-168 23-59 (126)
110 KOG2937 Decapping enzyme compl 56.6 3.3 7.2E-05 37.3 -0.2 66 99-168 229-296 (348)
111 PF12860 PAS_7: PAS fold 51.4 9.6 0.00021 28.3 1.6 43 110-157 5-47 (115)
112 PF08918 PhoQ_Sensor: PhoQ Sen 31.1 13 0.00027 30.4 -0.6 42 87-128 50-92 (180)
113 cd09232 Snurportin-1_C C-termi 31.0 26 0.00056 29.2 1.2 68 87-155 5-78 (186)
114 PF04468 PSP1: PSP1 C-terminal 25.5 83 0.0018 22.6 2.9 40 232-272 25-64 (88)
115 PF09505 Dimeth_Pyl: Dimethyla 21.9 55 0.0012 29.8 1.6 24 144-167 408-431 (466)
116 PF11090 DUF2833: Protein of u 21.3 1.9E+02 0.0042 20.9 4.0 47 35-82 37-83 (86)
117 KOG4485 Uncharacterized conser 20.4 3.7E+02 0.0079 25.9 6.6 77 137-222 101-189 (724)
No 1
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-44 Score=309.72 Aligned_cols=261 Identities=54% Similarity=0.921 Sum_probs=243.0
Q ss_pred ccccccccccCCcEEEec-CCCCChHHHHHHHHHHHHHHHHcCccEEEEEcccccccchHHHHhcCceeeeecCceEEEE
Q 023855 13 NKFLNGINDNYGGVVVQM-NEPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLV 91 (276)
Q Consensus 13 ~~~~~~~~d~~~g~~v~~-~~~~~~~~f~~~l~~~l~~w~~~~~~~iw~~~~~~~~~l~~~~~~~gf~~h~~~~~~~~l~ 91 (276)
...+.+..|+|+||.++. ..+.|...|.+.|++|+.+|+.+++++||++++..+++++..|+++||.+||+..+|+|++
T Consensus 19 ~~~l~~~~D~~ggv~v~~~~~~~d~~~f~~~l~~Sl~~W~~~Gr~~iwl~l~~~~~~lV~~a~~~gf~~hHae~~~~~l~ 98 (295)
T KOG0648|consen 19 SSLLAGLSDRYGGVVVDIVPEPMDEKLFIEELRASLQKWYLQGRKGIWLKLPEELARLVEEAAKYGFDYHHAESLYVMLT 98 (295)
T ss_pred hhhhcccccccCCEEeecccCCCCHHHHHHHHHHHHHHHHHccCcccceechHHHHhHHHHHHhcCcEEecccccceeee
Confidence 457799999999999999 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCCCCCcceeEEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeE
Q 023855 92 YWIPGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVE 171 (276)
Q Consensus 92 ~~~~~~~~~~p~~~~~~v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~ 171 (276)
.|+++.+.++|.++.|+++++++|+|.+++||+++.........|.|.+|+|.|++||++.++|+||++||||++.++..
T Consensus 99 ~Wl~e~~~~lP~~Ash~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~e 178 (295)
T KOG0648|consen 99 SWLREAPSTLPANASHRVGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFVE 178 (295)
T ss_pred eeeccccccCCCchhhheeeeeeEecCCceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhhh
Confidence 99999999999999999999999999889999999877777778999999999999999999999999999999999999
Q ss_pred EEEEEeeccCCCc--eEEEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCCcchHHHHHHHHHHHHhhccccCCCC
Q 023855 172 VLAFRQSHQSFFE--KSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYVQNQELLKYIVDICSAKVDTRGYHG 249 (276)
Q Consensus 172 ~l~~~~~~~~~~~--~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g 249 (276)
.+.++..|...+. +.++||+|.+.+.+..++.+..|+..++|||++++...++.+...+.+.+...|+++... .+.|
T Consensus 179 Vla~r~~H~~~~~~~ksd~f~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~qp~~~~~~m~~~~~~Ic~~~~~~-~~~~ 257 (295)
T KOG0648|consen 179 VLAFRRAHNATFGLIKSDMFFTCELRPRSLDITKCKREIEAAAWMPIEEYVSQPLVHPKGMFRLAAGICLNRLEE-FYLG 257 (295)
T ss_pred HHHHHhhhcchhhcccccceeEEEeeccccccchhHHHHHHHhcccHHHhhcccccccchhhHHHhhhhHHHHhh-hcCC
Confidence 9998888877766 889999999999999999999999999999999999999987677888888899999998 7999
Q ss_pred cccccccccCCCCeeEEEeeccccc
Q 023855 250 FSPVPTTSAFSDKKHYFYLNSVDLK 274 (276)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (276)
+...+......++.+++|||.++++
T Consensus 258 ~~~~~l~~~~~~k~~~ly~~~~~~~ 282 (295)
T KOG0648|consen 258 LTAIVLTTTYTGKESYLYYNEDHAN 282 (295)
T ss_pred ccceeccccccCcccccccccchhh
Confidence 9877777777889999999998854
No 2
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.90 E-value=1.2e-22 Score=159.51 Aligned_cols=116 Identities=60% Similarity=0.980 Sum_probs=94.1
Q ss_pred ceeEEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceE
Q 023855 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKS 186 (276)
Q Consensus 107 ~~v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~ 186 (276)
|.++|+++|++.+++|||++|+.. .++.|.+|||++++||++.+||+||++||||+.+.....++....+...+...
T Consensus 1 ~~~~~~~~v~~~~~~vLl~~r~~~---~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~ 77 (127)
T cd04670 1 HTVGVGGLVLNEKNEVLVVQERNK---TPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFRHAHPGAFGKS 77 (127)
T ss_pred CeeEEEEEEEcCCCeEEEEEccCC---CCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEEEEEEecCCCCcCce
Confidence 568899999998899999988764 35899999999999999999999999999999998777776655444445556
Q ss_pred EEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCCc
Q 023855 187 DIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 187 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
.++|++.+.........+++|+.+++|++++++.+.++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~ 116 (127)
T cd04670 78 DLYFICRLKPLSFDINFDTSEIAAAKWMPLEEYISQPIT 116 (127)
T ss_pred eEEEEEEEccCcCcCCCChhhhheeEEEcHHHHhcchhH
Confidence 677777665434445556788899999999999888776
No 3
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.87 E-value=2e-21 Score=152.07 Aligned_cols=114 Identities=22% Similarity=0.286 Sum_probs=88.8
Q ss_pred ceeEEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccC--CCc
Q 023855 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQS--FFE 184 (276)
Q Consensus 107 ~~v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~--~~~ 184 (276)
++++|+++|++.+++|||++|.+.+ .++.|.+|||++++||++.+||+||++||||+.+....+++....... ...
T Consensus 1 ~~~~~~~~i~~~~~~vLL~~r~~~~--~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~ 78 (125)
T cd04679 1 PRVGCGAAILRDDGKLLLVKRLRAP--EAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVDHIIEEPPQH 78 (125)
T ss_pred CceEEEEEEECCCCEEEEEEecCCC--CCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEEEeecccCCCCe
Confidence 3678999999988999999998654 358999999999999999999999999999999988888776554322 233
Q ss_pred eEEEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCC
Q 023855 185 KSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQP 223 (276)
Q Consensus 185 ~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~ 223 (276)
...++|++...... ....+++|+.+++|++++++.+..
T Consensus 79 ~~~~~f~~~~~~~~-~~~~~~~E~~~~~W~~~~~l~~~l 116 (125)
T cd04679 79 WVAPVYLAENFSGE-PRLMEPDKLLELGWFALDALPQPL 116 (125)
T ss_pred EEEEEEEEeecCCc-cccCCCccccEEEEeCHHHCCchh
Confidence 45667777654322 222355789999999999998643
No 4
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.86 E-value=1.7e-20 Score=152.68 Aligned_cols=129 Identities=23% Similarity=0.314 Sum_probs=97.7
Q ss_pred cceeEEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee-------
Q 023855 106 SHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQS------- 178 (276)
Q Consensus 106 ~~~v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~------- 178 (276)
.++++|+++|++.+|+|||++|... ++.|++|||++++||++.+||.||++||||+.+....+++....
T Consensus 6 ~~~~~v~~~i~~~~g~vLL~~r~~~----~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y~~~ 81 (156)
T PRK00714 6 GYRPNVGIILLNRQGQVFWGRRIGQ----GHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETRDWLRYDLP 81 (156)
T ss_pred CCCCeEEEEEEecCCEEEEEEEcCC----CCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEcCCeEEecCc
Confidence 4567899999998999999999753 37899999999999999999999999999999877776654310
Q ss_pred -------ccCCCceEEEEEEEEEecCCcCcCC---CccccceEEEEehhhhhcCCCcchHHHHHHHHHHH
Q 023855 179 -------HQSFFEKSDIFFLCMLRPLSFDIQK---QESEIEAAEWMPLEEYAAQPYVQNQELLKYIVDIC 238 (276)
Q Consensus 179 -------~~~~~~~~~~~f~~~~~~~~~~~~~---~~~E~~~~~Wv~~~el~~~~~~~~~~~i~~~~~~~ 238 (276)
.....+...++|++........+.+ +++|+.+++|++++++.++..+..+.+++.+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~~~~~r~~~~~~~~~~ 151 (156)
T PRK00714 82 KRLVRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQVVPFKRDVYRRVLKEF 151 (156)
T ss_pred HHHhhccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhchhhhHHHHHHHHHHH
Confidence 1111233567888877543333332 34689999999999999987665566666666544
No 5
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.86 E-value=1.2e-20 Score=151.99 Aligned_cols=126 Identities=29% Similarity=0.463 Sum_probs=94.9
Q ss_pred ceeEEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEe-----ecc-
Q 023855 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ-----SHQ- 180 (276)
Q Consensus 107 ~~v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~-----~~~- 180 (276)
++.+|++++++.+++|||++|.+.+ +.|.+|||++++||++.+||+||++||||+++....+++... ...
T Consensus 2 ~~~~v~~ii~~~~~~vLL~~r~~~~----~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~~~ 77 (147)
T cd03671 2 YRPNVGVVLFNEDGKVFVGRRIDTP----GAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLPP 77 (147)
T ss_pred CCceEEEEEEeCCCEEEEEEEcCCC----CCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeChh
Confidence 4578999999988999999998753 789999999999999999999999999999987777665421 111
Q ss_pred ----C-----CCceEEEEEEEEEecCCcCcCCC---ccccceEEEEehhhhhcCCCcchHHHHHHHHH
Q 023855 181 ----S-----FFEKSDIFFLCMLRPLSFDIQKQ---ESEIEAAEWMPLEEYAAQPYVQNQELLKYIVD 236 (276)
Q Consensus 181 ----~-----~~~~~~~~f~~~~~~~~~~~~~~---~~E~~~~~Wv~~~el~~~~~~~~~~~i~~~~~ 236 (276)
. ..+...++|++.+......+..+ ++|+.+++|++++++.++..+....++.+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~ 145 (147)
T cd03671 78 ELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLIVPFKRPVYEAVLK 145 (147)
T ss_pred hhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhchhhhHHHHHHHHH
Confidence 0 11345677777665432333332 57999999999999999987765666655543
No 6
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.85 E-value=2.4e-20 Score=149.87 Aligned_cols=116 Identities=16% Similarity=0.233 Sum_probs=88.6
Q ss_pred CcceeEEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceee--EEEEEEeeccC-
Q 023855 105 ASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFV--EVLAFRQSHQS- 181 (276)
Q Consensus 105 ~~~~v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~--~~l~~~~~~~~- 181 (276)
.++.++|+++|+|.+|+|||+||...+ .+|.|.+|||++++||++.+||+||++||||+++... .+++.......
T Consensus 9 ~~p~v~v~~vI~~~~g~vLl~~R~~~p--~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~~ 86 (144)
T cd03430 9 NTPLVSIDLIVENEDGQYLLGKRTNRP--AQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVFEHFYDD 86 (144)
T ss_pred CCCeEEEEEEEEeCCCeEEEEEccCCC--CCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEEEEEEEecc
Confidence 345789999999988999999998755 4689999999999999999999999999999998766 66655432111
Q ss_pred -----C--CceEEEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCC
Q 023855 182 -----F--FEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPY 224 (276)
Q Consensus 182 -----~--~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~ 224 (276)
. .+....+|.|.... .....++.|+.+++|++++++.++..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~e~~~~~W~~~~el~~~~~ 134 (144)
T cd03430 87 NFFGDDFSTHYVVLGYVLKLSS--NELLLPDEQHSEYQWLTSDELLADDD 134 (144)
T ss_pred ccccCCCccEEEEEEEEEEEcC--CcccCCchhccEeEEecHHHHhcCCC
Confidence 1 12345566665532 23445678999999999999997643
No 7
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.85 E-value=1.2e-20 Score=152.12 Aligned_cols=112 Identities=27% Similarity=0.352 Sum_probs=83.4
Q ss_pred ceeEEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcc--eeeEEEEEEe-------
Q 023855 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT--EFVEVLAFRQ------- 177 (276)
Q Consensus 107 ~~v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~--~~~~~l~~~~------- 177 (276)
++++|++++++.+|+|||++|... ++.|++|||++|+|||+.+||+||++||||+++ ....++....
T Consensus 6 ~~~~v~~vi~~~~~~vLl~~r~~~----~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 81 (148)
T PRK09438 6 RPVSVLVVIYTPDLGVLMLQRADD----PDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEYEIF 81 (148)
T ss_pred CceEEEEEEEeCCCeEEEEEecCC----CCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeecccccccccccc
Confidence 567899999998899999988653 478999999999999999999999999999998 4333322110
Q ss_pred e------ccCCCceEEEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCCc
Q 023855 178 S------HQSFFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 178 ~------~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
. .....+...++|+|..... ..+..+|+.+++|++++++.++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~E~~~~~W~~~~e~~~~~~~ 132 (148)
T PRK09438 82 PHWRHRYAPGVTRNTEHWFCLALPHE---RPVVLTEHLAYQWLDAREAAALTKS 132 (148)
T ss_pred hhhhhccccccCCceeEEEEEecCCC---CccccCcccceeeCCHHHHHHHhcC
Confidence 0 1112345667888864321 1233459999999999999998764
No 8
>PLN02325 nudix hydrolase
Probab=99.85 E-value=2e-20 Score=150.26 Aligned_cols=119 Identities=23% Similarity=0.329 Sum_probs=89.5
Q ss_pred CCCcceeEEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc--
Q 023855 103 ANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQ-- 180 (276)
Q Consensus 103 ~~~~~~v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~-- 180 (276)
.+++++++|++++++ +++|||+||...+ +.|.|.+|||+++.||++.+||+||++||||+++....+++......
T Consensus 4 ~~~~p~~~v~~vi~~-~~~vLL~rr~~~~--~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~~~~~~~ 80 (144)
T PLN02325 4 GEPIPRVAVVVFLLK-GNSVLLGRRRSSI--GDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTVTNNVFLE 80 (144)
T ss_pred CCCCCeEEEEEEEEc-CCEEEEEEecCCC--CCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEecceeec
Confidence 346678899988887 4799999998755 45899999999999999999999999999999998888887654322
Q ss_pred --CCCceEEEEEEEEEecCCc-CcCCCccccceEEEEehhhhhcCCC
Q 023855 181 --SFFEKSDIFFLCMLRPLSF-DIQKQESEIEAAEWMPLEEYAAQPY 224 (276)
Q Consensus 181 --~~~~~~~~~f~~~~~~~~~-~~~~~~~E~~~~~Wv~~~el~~~~~ 224 (276)
...+...++|.|....... .....++|..+++|+++++++...+
T Consensus 81 ~~~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~~~ 127 (144)
T PLN02325 81 EPKPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEPLF 127 (144)
T ss_pred CCCCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChhhh
Confidence 1133455666666543322 2233446678899999999987544
No 9
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.85 E-value=4.1e-20 Score=150.42 Aligned_cols=114 Identities=16% Similarity=0.201 Sum_probs=85.2
Q ss_pred cceeEEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCccee--eEEEEEEeeccC--
Q 023855 106 SHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEF--VEVLAFRQSHQS-- 181 (276)
Q Consensus 106 ~~~v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~--~~~l~~~~~~~~-- 181 (276)
.+.++|+++|++++++|||+||...+ .+|.|+||||++++||++.+||+||++||||+++.. ..+++.......
T Consensus 15 ~~~~~v~~vI~~~~g~VLL~kR~~~~--~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~ 92 (159)
T PRK15434 15 TPLISLDFIVENSRGEFLLGKRTNRP--AQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDN 92 (159)
T ss_pred CceEEEEEEEECCCCEEEEEEccCCC--CCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEeecccc
Confidence 34568999999888999999998654 468999999999999999999999999999998742 344443322111
Q ss_pred ------CCceEEEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCC
Q 023855 182 ------FFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQP 223 (276)
Q Consensus 182 ------~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~ 223 (276)
......++|.|... ......++.|+.+++|++++++.++.
T Consensus 93 ~~~~~~~~~~i~~~f~~~~~--~g~~~~~~~E~~~~~W~~~~el~~~~ 138 (159)
T PRK15434 93 FSGTDFTTHYVVLGFRLRVA--EEDLLLPDEQHDDYRWLTPDALLASD 138 (159)
T ss_pred cCCCccceEEEEEEEEEEec--CCcccCChHHeeEEEEEeHHHhhhcc
Confidence 11234456666543 34455566799999999999998863
No 10
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.84 E-value=3.6e-20 Score=145.67 Aligned_cols=115 Identities=30% Similarity=0.432 Sum_probs=89.6
Q ss_pred ceeEEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc--CCCc
Q 023855 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQ--SFFE 184 (276)
Q Consensus 107 ~~v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~--~~~~ 184 (276)
++++|+++|++.+++|||++|...+ ..+.|.+|||++++||++.+||.||++||||+++.....++...... ....
T Consensus 1 p~~~v~~ii~~~~~~iLl~~r~~~~--~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~ 78 (129)
T cd04678 1 PRVGVGVFVLNPKGKVLLGKRKGSH--GAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTNDVFEEEGKH 78 (129)
T ss_pred CceEEEEEEECCCCeEEEEeccCCC--CCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEEEEeEEeCCCCcE
Confidence 3678999999988999999998654 45899999999999999999999999999999998777776544321 2234
Q ss_pred eEEEEEEEEEecCCcCcC-CCccccceEEEEehhhhhcCC
Q 023855 185 KSDIFFLCMLRPLSFDIQ-KQESEIEAAEWMPLEEYAAQP 223 (276)
Q Consensus 185 ~~~~~f~~~~~~~~~~~~-~~~~E~~~~~Wv~~~el~~~~ 223 (276)
...++|.|.......... .+.+|+.+++|++++++.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~ 118 (129)
T cd04678 79 YVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSVD 118 (129)
T ss_pred EEEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCcc
Confidence 566777776654332222 255778899999999999874
No 11
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.84 E-value=2.8e-20 Score=144.17 Aligned_cols=109 Identities=26% Similarity=0.325 Sum_probs=86.7
Q ss_pred EEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcce-eeEEEEEEeeccCCCceEEE
Q 023855 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE-FVEVLAFRQSHQSFFEKSDI 188 (276)
Q Consensus 110 ~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~-~~~~l~~~~~~~~~~~~~~~ 188 (276)
+|.+++++.++++||++|+.. +.|.+|||++++||++.+||+||++||||+.+. ....++.............+
T Consensus 2 ~~~~~i~~~~~~vLL~~r~~~-----~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (120)
T cd04680 2 GARAVVTDADGRVLLVRHTYG-----PGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGVYYHSASGSWDHVI 76 (120)
T ss_pred ceEEEEECCCCeEEEEEECCC-----CcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEEEecCCCCCceEEE
Confidence 678889998899999998743 489999999999999999999999999999998 77777776655443445566
Q ss_pred EEEEEEecCCcCcCCCccccceEEEEehhhhhcCCCc
Q 023855 189 FFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 189 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
+|.|.... .....+++|+.+++|++++++.+...+
T Consensus 77 ~f~~~~~~--~~~~~~~~E~~~~~w~~~~~l~~~~~~ 111 (120)
T cd04680 77 VFRARADT--QPVIRPSHEISEARFFPPDALPEPTTP 111 (120)
T ss_pred EEEecccC--CCccCCcccEEEEEEECHHHCcccCCh
Confidence 67775432 222456688999999999999986544
No 12
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.84 E-value=3.5e-20 Score=147.26 Aligned_cols=118 Identities=24% Similarity=0.235 Sum_probs=91.3
Q ss_pred ceeEEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceE
Q 023855 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKS 186 (276)
Q Consensus 107 ~~v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~ 186 (276)
|+.+|++++++.++++||+++.+.+. .++.|++|||+++.||++.+||+||++||||+.+.....++............
T Consensus 1 ~~~~v~v~~~~~~~~iLl~~~~~~~~-~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd03424 1 HPDAVAVLPYDDDGKVVLVRQYRPPV-GGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGSFYPSPGFSDER 79 (137)
T ss_pred CCCEEEEEEEcCCCeEEEEEeeecCC-CCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEeeEecCCcccCcc
Confidence 35689999999889999998876654 35799999999999999999999999999999997666666554433333345
Q ss_pred EEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCCc
Q 023855 187 DIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 187 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
..+|++...........++.|+.+++|++++++.++...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~ 118 (137)
T cd03424 80 IHLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLAD 118 (137)
T ss_pred EEEEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHc
Confidence 667777654433224566788999999999999886554
No 13
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.84 E-value=6.6e-20 Score=146.92 Aligned_cols=117 Identities=28% Similarity=0.346 Sum_probs=88.6
Q ss_pred cceeEEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC-Cc
Q 023855 106 SHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSF-FE 184 (276)
Q Consensus 106 ~~~v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~-~~ 184 (276)
....+|+++|++.++++||++|+..+ .++.|++|||++++||++.+||+||++||||+++.....++........ ..
T Consensus 11 ~~~~av~~vv~~~~~~vLL~~r~~~~--~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 88 (142)
T cd04700 11 VEARAAGAVILNERNDVLLVQEKGGP--KKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGTYLGRFDDGVL 88 (142)
T ss_pred eeeeeEEEEEEeCCCcEEEEEEcCCC--CCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEEEEEEcCCCcE
Confidence 34568999999988899999987654 4689999999999999999999999999999999888777654432221 22
Q ss_pred eEEEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCCc
Q 023855 185 KSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 185 ~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
...++|++........+ ....|+.+++|++++++.++...
T Consensus 89 ~~~~~f~~~~~~~~~~~-~~~~E~~~~~w~~~~el~~~~~~ 128 (142)
T cd04700 89 VLRHVWLAEPEGQTLAP-KFTDEIAEASFFSREDVAQLYAQ 128 (142)
T ss_pred EEEEEEEEEecCCcccc-CCCCCEEEEEEECHHHhhhcccc
Confidence 34567777664322222 23478999999999999987654
No 14
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.84 E-value=6.7e-20 Score=143.40 Aligned_cols=113 Identities=25% Similarity=0.353 Sum_probs=86.5
Q ss_pred EEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc---CC---C
Q 023855 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQ---SF---F 183 (276)
Q Consensus 110 ~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~---~~---~ 183 (276)
+|+++|+++ ++|||++|.+.+ .++.|.+|||++++||++.+||+||++||||+++.....++...... .. .
T Consensus 2 ~~~~ii~~~-~~vLl~~~~~~~--~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 78 (128)
T cd04684 2 GAYAVIPRD-GKLLLIQKNGGP--YEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGDYDA 78 (128)
T ss_pred eeEEEEEeC-CEEEEEEccCCC--CCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCCeec
Confidence 677888885 899999998765 46999999999999999999999999999999988777776543221 11 2
Q ss_pred ceEEEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCCc
Q 023855 184 EKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 184 ~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
....++|.|.............+|..+++|++++++.+....
T Consensus 79 ~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~ 120 (128)
T cd04684 79 HHLCVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAIERLLS 120 (128)
T ss_pred cEEEEEEEEEEecCccccCCCCCCceeeEEECHHHhhccCCC
Confidence 345677877665433212345578889999999999977664
No 15
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.84 E-value=5.4e-20 Score=144.51 Aligned_cols=118 Identities=29% Similarity=0.450 Sum_probs=87.8
Q ss_pred eEEEEEEEeCC---eeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccC----
Q 023855 109 VGVGAFVMNGK---REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQS---- 181 (276)
Q Consensus 109 v~v~~vv~~~~---~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~---- 181 (276)
.++++++++.+ ++|||++|++. +.|.||||++++||++.+||.||++||||+.+.....++.......
T Consensus 2 ~~a~~ii~~~~~~~~~vLl~~~~~~-----~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 76 (131)
T cd03673 2 LAAGGVVFRGSDGGIEVLLIHRPRG-----DDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSGK 76 (131)
T ss_pred eeEEEEEEEccCCCeEEEEEEcCCC-----CcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEEEEEeccCCCC
Confidence 46788888854 89999999753 7899999999999999999999999999999988877765543332
Q ss_pred CCceEEEEEEEEEecCCcCcCC-CccccceEEEEehhhhhcCCCc-chHHHHHH
Q 023855 182 FFEKSDIFFLCMLRPLSFDIQK-QESEIEAAEWMPLEEYAAQPYV-QNQELLKY 233 (276)
Q Consensus 182 ~~~~~~~~f~~~~~~~~~~~~~-~~~E~~~~~Wv~~~el~~~~~~-~~~~~i~~ 233 (276)
......++|.+..... .... ++.|+.+++|++++++.++... ....++..
T Consensus 77 ~~~~~~~~~~~~~~~~--~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~ 128 (131)
T cd03673 77 RVHKTVHWWLMRALGG--EFTPQPDEEVDEVRWLPPDEARDRLSYPNDRELLRA 128 (131)
T ss_pred CcceEEEEEEEEEcCC--CcccCCCCcEEEEEEcCHHHHHHHcCCHhHHHHHHH
Confidence 2344566677655332 2222 5688999999999999886443 44444433
No 16
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.84 E-value=3.5e-20 Score=145.68 Aligned_cols=119 Identities=29% Similarity=0.451 Sum_probs=95.0
Q ss_pred ceeEEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCC---
Q 023855 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFF--- 183 (276)
Q Consensus 107 ~~v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~~--- 183 (276)
++.+|++++++.+++|||++|.+.+...++.|.+|||++++||++.+||+||+.||||+++.....++.........
T Consensus 1 ~~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~~~~~~~~~~~~~ 80 (134)
T PF00293_consen 1 WRRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLGLFSYPSPSGDPE 80 (134)
T ss_dssp EEEEEEEEEEETTTEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTESS
T ss_pred CCCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccceeeeecccCCCcc
Confidence 36789999999888999999998765456999999999999999999999999999999997666665544433322
Q ss_pred ceEEEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCCc
Q 023855 184 EKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 184 ~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
+...++|.+...........+..|+.+++|++++++.++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~ 122 (134)
T PF00293_consen 81 GEIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLLN 122 (134)
T ss_dssp EEEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHT
T ss_pred cEEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchhC
Confidence 356677777665554445555569999999999999997765
No 17
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=6.9e-20 Score=144.15 Aligned_cols=107 Identities=27% Similarity=0.530 Sum_probs=82.0
Q ss_pred EEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC----Cce
Q 023855 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSF----FEK 185 (276)
Q Consensus 110 ~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~----~~~ 185 (276)
+|+++|++.+++|||++|...+ .++.|.+|||+++.||++.+||.||++||||+++.....++........ ...
T Consensus 3 av~~~i~~~~~~vLL~~r~~~~--~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 80 (130)
T cd04681 3 AVGVLILNEDGELLVVRRAREP--GKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTYPYGGMEYDT 80 (130)
T ss_pred eEEEEEEcCCCcEEEEEecCCC--CCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeecceeeeCCceeEE
Confidence 6788889988999999998765 3589999999999999999999999999999999877776544322111 122
Q ss_pred EEEEEEEEEecCCcCcCCCccccceEEEEehhhhh
Q 023855 186 SDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYA 220 (276)
Q Consensus 186 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~ 220 (276)
..++|+|.+.. .....+.+|+.+++|++++++.
T Consensus 81 ~~~~~~~~~~~--~~~~~~~~e~~~~~W~~~~el~ 113 (130)
T cd04681 81 LDLFFVCQVDD--KPIVKAPDDVAELKWVVPQDIE 113 (130)
T ss_pred EEEEEEEEeCC--CCCcCChHHhheeEEecHHHCC
Confidence 33467776542 2234456789999999999985
No 18
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=1.5e-19 Score=140.82 Aligned_cols=109 Identities=21% Similarity=0.396 Sum_probs=82.7
Q ss_pred EEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEE
Q 023855 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIF 189 (276)
Q Consensus 110 ~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 189 (276)
.++++|++++++|||++|... +.+.|.||||++++||++.+||+||++||||+++....+++.... .+...++
T Consensus 2 ~~~~ii~~~~~~vLL~~r~~~---~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~~~~----~~~~~~~ 74 (121)
T cd04669 2 RASIVIINDQGEILLIRRIKP---GKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIVNQ----NGRTEHY 74 (121)
T ss_pred ceEEEEEeCCCEEEEEEEecC---CCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeEEEEEee----CCcEEEE
Confidence 366788887789999998754 347899999999999999999999999999999977777766544 2345678
Q ss_pred EEEEEecCCcCcC-------CCccccceEEEEehhhhhcCCCc
Q 023855 190 FLCMLRPLSFDIQ-------KQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 190 f~~~~~~~~~~~~-------~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
|.|.......... .++.+..+++|++++++..+++.
T Consensus 75 f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~~~ 117 (121)
T cd04669 75 FLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETIPLR 117 (121)
T ss_pred EEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccCCCC
Confidence 8886643221110 11345667999999999998765
No 19
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.83 E-value=1.4e-19 Score=144.32 Aligned_cols=119 Identities=27% Similarity=0.412 Sum_probs=82.9
Q ss_pred eEEEEEEEeCC-eeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEE-----EeeccCC
Q 023855 109 VGVGAFVMNGK-REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF-----RQSHQSF 182 (276)
Q Consensus 109 v~v~~vv~~~~-~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~-----~~~~~~~ 182 (276)
.+|++++++++ ++|||++|++ .+.|.+|||++++||++.+||.||++||||+++......+. .......
T Consensus 3 ~~~~~~v~~~~~~~vLLv~r~~-----~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 77 (138)
T cd03674 3 FTASAFVVNPDRGKVLLTHHRK-----LGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVHPIDGH 77 (138)
T ss_pred EEEEEEEEeCCCCeEEEEEEcC-----CCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccceeccccccceeEeecCC
Confidence 46888889876 8999999874 37899999999999999999999999999998765554321 1111111
Q ss_pred -------CceEEEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCCc-chHHHHHH
Q 023855 183 -------FEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV-QNQELLKY 233 (276)
Q Consensus 183 -------~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~-~~~~~i~~ 233 (276)
.....++|+|......... ..++|+.+++|++++++..+.+. ...+++..
T Consensus 78 ~~~~~~~~~~~~~~y~~~~~~~~~~~-~~~~E~~~~~W~~~~el~~~~~~~~~~~~i~~ 135 (138)
T cd03674 78 PKRGVPGHLHLDLRFLAVAPADDVAP-PKSDESDAVRWFPLDELASLELPEDVRRLVEK 135 (138)
T ss_pred CCCCCCCcEEEEEEEEEEccCccccC-CCCCcccccEEEcHHHhhhccCCHHHHHHHHH
Confidence 1123446777643322111 35678999999999999877665 33444443
No 20
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.83 E-value=1.8e-19 Score=144.10 Aligned_cols=115 Identities=17% Similarity=0.224 Sum_probs=76.5
Q ss_pred EEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEe--------eccC
Q 023855 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ--------SHQS 181 (276)
Q Consensus 110 ~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~--------~~~~ 181 (276)
.+.+.+++.+++|||+||...+...+|.|++|||++++||++.+||+||++||||+++....+..... ...+
T Consensus 5 ~~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 84 (141)
T PRK15472 5 TIVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTYADG 84 (141)
T ss_pred eEEEEEEecCCEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeeeccccccccceeEEecCC
Confidence 34444555578999999876543456999999999999999999999999999999875443221100 0011
Q ss_pred CCceEEEEE-EEEEecCCcCcCCCccccceEEEEehhhhhcCCCc
Q 023855 182 FFEKSDIFF-LCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 182 ~~~~~~~~f-~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
......++| ++........+. ..+|+.+++|++++++.++++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~-~~~E~~~~~w~~~~el~~l~~~ 128 (141)
T PRK15472 85 RKEEIYMIYLIFDCVSANRDVK-INEEFQDYAWVKPEDLVHYDLN 128 (141)
T ss_pred CceeEEEEEEEEEeecCCCccc-CChhhheEEEccHHHhcccccc
Confidence 111122222 222222233333 3478999999999999999886
No 21
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=9.2e-20 Score=142.12 Aligned_cols=112 Identities=21% Similarity=0.243 Sum_probs=81.3
Q ss_pred EEEEEEeCCeeEEEEEeccC-CCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEE
Q 023855 111 VGAFVMNGKREVLVVQENSG-RFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIF 189 (276)
Q Consensus 111 v~~vv~~~~~~vLLvkr~~~-~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 189 (276)
+++++++ +|+|||++|.+. ....+|.|.+|||+++.||++.+||+||++||||++++...................++
T Consensus 4 ~~~~~~~-~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 82 (122)
T cd04682 4 ALALLIG-DGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPSASPPGTEHV 82 (122)
T ss_pred EEEEEEc-CCEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccccceeEecccCCCCceEEE
Confidence 3344444 599999999875 33457999999999999999999999999999999986433322222222223456677
Q ss_pred EEEEEecCCcCcCCCccccceEEEEehhhhhcCCC
Q 023855 190 FLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPY 224 (276)
Q Consensus 190 f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~ 224 (276)
|++...... ....+.+|+.+++|++++++.+...
T Consensus 83 f~~~~~~~~-~~~~~~~E~~~~~W~~~~el~~~~~ 116 (122)
T cd04682 83 FVVPLTARE-DAILFGDEGQALRLMTVEEFLAHED 116 (122)
T ss_pred EEEEEecCC-CccccCchhheeecccHHHHhhccc
Confidence 777664333 3446778999999999999987644
No 22
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=1.5e-19 Score=140.42 Aligned_cols=111 Identities=33% Similarity=0.502 Sum_probs=83.8
Q ss_pred eEEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccC------C
Q 023855 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQS------F 182 (276)
Q Consensus 109 v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~------~ 182 (276)
++|++++++ ++++||++|.+.+ +++.|.+|||++++||++.+||.||++||||+++.....++....... .
T Consensus 1 ~~v~~ii~~-~~~vLl~~r~~~~--~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 77 (122)
T cd04673 1 VAVGAVVFR-GGRVLLVRRANPP--DAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAGRVE 77 (122)
T ss_pred CcEEEEEEE-CCEEEEEEEcCCC--CCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCCCccc
Confidence 467788887 4799999998654 458999999999999999999999999999999877777665443321 1
Q ss_pred CceEEEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCCc
Q 023855 183 FEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 183 ~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
.....+.|.|.... ... ..++|+.+++|++++++.++++.
T Consensus 78 ~~~~~~~~~~~~~~--~~~-~~~~E~~~~~w~~~~el~~~~~~ 117 (122)
T cd04673 78 FHYVLIDFLCRYLG--GEP-VAGDDALDARWVPLDELAALSLT 117 (122)
T ss_pred eEEEEEEEEEEeCC--Ccc-cCCcccceeEEECHHHHhhCcCC
Confidence 22334455564432 222 34578899999999999998875
No 23
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=1.4e-19 Score=141.97 Aligned_cols=112 Identities=24% Similarity=0.301 Sum_probs=87.7
Q ss_pred EEEEEEEeCCeeEEEEEeccCCCCCCCcEEC-CccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEE
Q 023855 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKF-PTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDI 188 (276)
Q Consensus 110 ~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~l-PgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~ 188 (276)
++.++++|.+++|||++|...+...+|.|++ |||++++||++.+||+||++||||+.+.....++.+...........+
T Consensus 2 ~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~~~~~~~~~~~~~~ 81 (126)
T cd04697 2 ATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGLFYYDTDGNRVWGK 81 (126)
T ss_pred eEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeEEEecCCCceEEEE
Confidence 5788999999999999988766556799999 699999999999999999999999999866666655443332334455
Q ss_pred EEEEEEecCCcCcCCCccccceEEEEehhhhhcCCC
Q 023855 189 FFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPY 224 (276)
Q Consensus 189 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~ 224 (276)
+|.+... ....++++|+.+++|++++++.++..
T Consensus 82 ~f~~~~~---~~~~~~~~E~~~~~w~~~~el~~~~~ 114 (126)
T cd04697 82 VFSCVYD---GPLKLQEEEVEEITWLSINEILQFKE 114 (126)
T ss_pred EEEEEEC---CCCCCCHhHhhheEEcCHHHHHHHhh
Confidence 6666542 23446678999999999999988654
No 24
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=2.4e-19 Score=140.28 Aligned_cols=111 Identities=25% Similarity=0.359 Sum_probs=82.2
Q ss_pred eeEEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc--CC---
Q 023855 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQ--SF--- 182 (276)
Q Consensus 108 ~v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~--~~--- 182 (276)
.++|+++|++.+++|||+||.. .++.|.+|||++++||++.+||+||++||||+++.....+....... ..
T Consensus 2 ~~~v~~~i~~~~~~iLL~r~~~----~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 77 (125)
T cd04696 2 LVTVGALIYAPDGRILLVRTTK----WRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFHKP 77 (125)
T ss_pred ccEEEEEEECCCCCEEEEEccC----CCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeccCCCCCc
Confidence 3578889999889999998764 24899999999999999999999999999999987776654432211 11
Q ss_pred CceEEEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCCc
Q 023855 183 FEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 183 ~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
.....+.|.+.... ..+. ..+|+.+++|++++++.++++.
T Consensus 78 ~~~~~~~~~~~~~~--~~~~-~~~e~~~~~W~~~~el~~~~~~ 117 (125)
T cd04696 78 AHFVLFDFFARTDG--TEVT-PNEEIVEWEWVTPEEALDYPLN 117 (125)
T ss_pred cEEEEEEEEEEecC--Cccc-CCcccceeEEECHHHHhcCCCC
Confidence 12223445554432 2232 3468999999999999999875
No 25
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.82 E-value=4.5e-19 Score=140.30 Aligned_cols=127 Identities=28% Similarity=0.260 Sum_probs=90.5
Q ss_pred EEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC--CceEE
Q 023855 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSF--FEKSD 187 (276)
Q Consensus 110 ~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~--~~~~~ 187 (276)
+|++++.+ ++++||++|.+. +++.|.+|||++++||++.+||.||++||||+++....+++........ .....
T Consensus 2 ~v~~ii~~-~~~vLlv~r~~~---~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 77 (134)
T cd03675 2 TVAAVVER-DGRFLLVEEETD---GGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSDTTYLR 77 (134)
T ss_pred eEEEEEEE-CCEEEEEEEccC---CCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEEEEeecCCCCeeEEE
Confidence 56666655 679999999765 3589999999999999999999999999999999877776654433221 22334
Q ss_pred EEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCCcchHHHHHHHHHHHHhh
Q 023855 188 IFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYVQNQELLKYIVDICSAK 241 (276)
Q Consensus 188 ~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~i~~~~~~~~~~ 241 (276)
++|++.+..... ....++|+.++.|++++++.++......+.+...++.++..
T Consensus 78 ~~f~~~~~~~~~-~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~~i~~~l~~ 130 (134)
T cd03675 78 FAFAAELLEHLP-DQPLDSGIVRAHWLTLEEILALAARLRSPLVLRCIEDYLAG 130 (134)
T ss_pred EEEEEEECCCCC-CCCCCCCceeeEEEeHHHHHhhhhhhcCchHHHHHHHHHhc
Confidence 567776543222 22344688999999999999887432244466666666543
No 26
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=2.9e-19 Score=138.63 Aligned_cols=112 Identities=21% Similarity=0.346 Sum_probs=81.6
Q ss_pred EEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcce--eeEEEEEEeeccCC-CceE
Q 023855 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE--FVEVLAFRQSHQSF-FEKS 186 (276)
Q Consensus 110 ~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~--~~~~l~~~~~~~~~-~~~~ 186 (276)
+|.++|++ +++|||+||.+.+. .++.|.+|||++++||++.+||+||++||||+.+. ....++........ ....
T Consensus 2 ~v~~vi~~-~~~vLL~~r~~~~~-~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~ 79 (120)
T cd04683 2 AVYVLLRR-DDEVLLQRRANTGY-MDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDIESRI 79 (120)
T ss_pred cEEEEEEE-CCEEEEEEccCCCC-CCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecCCCCceEE
Confidence 56777776 58999999986654 36899999999999999999999999999999986 44455554433322 3345
Q ss_pred EEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCC
Q 023855 187 DIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPY 224 (276)
Q Consensus 187 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~ 224 (276)
.++|.|..... .....+++|+.+++|++++++.....
T Consensus 80 ~~~f~~~~~~~-~~~~~~~~e~~~~~W~~~~~l~~~~~ 116 (120)
T cd04683 80 GLFFTVRRWSG-EPRNCEPDKCAELRWFPLDALPDDTV 116 (120)
T ss_pred EEEEEEEeecC-ccccCCCCcEeeEEEEchHHCcchhc
Confidence 56677754322 12223457889999999999987544
No 27
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.82 E-value=7e-19 Score=139.30 Aligned_cols=123 Identities=24% Similarity=0.274 Sum_probs=88.2
Q ss_pred EEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEE
Q 023855 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIF 189 (276)
Q Consensus 110 ~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 189 (276)
.+.+++++.+++|||+||.....+ +|.|.||||++++||++.+||.||++||||+++.....++...+..+......++
T Consensus 5 ~~~~~ii~~~~~vLL~~R~~~~~~-~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 83 (135)
T PRK10546 5 DVVAAIIERDGKILLAQRPAHSDQ-AGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYVASHQREVSGRRIHLHA 83 (135)
T ss_pred EEEEEEEecCCEEEEEEccCCCCC-CCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeEEEEEEecCCcEEEEEE
Confidence 344445566789999999766543 5999999999999999999999999999999987776666555544444444555
Q ss_pred EEEEEecCCcCcCCCccccceEEEEehhhhhcCCCc-chHHHHHHHHHH
Q 023855 190 FLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV-QNQELLKYIVDI 237 (276)
Q Consensus 190 f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~-~~~~~i~~~~~~ 237 (276)
|.+.... .. +...|..+++|++++++.++++. ....+++.+.+.
T Consensus 84 ~~~~~~~--~~--~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~ 128 (135)
T PRK10546 84 WHVPDFH--GE--LQAHEHQALVWCTPEEALRYPLAPADIPLLEAFMAL 128 (135)
T ss_pred EEEEEec--Cc--ccccccceeEEcCHHHcccCCCCcCcHHHHHHHHHh
Confidence 6554321 11 22356778999999999998887 455655554443
No 28
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=1.9e-19 Score=141.91 Aligned_cols=112 Identities=23% Similarity=0.373 Sum_probs=82.6
Q ss_pred ceeEEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeec-------
Q 023855 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSH------- 179 (276)
Q Consensus 107 ~~v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~------- 179 (276)
+.+++++++++.+++|||++|... +.|.||||++++||++.+||+||++||||+++.....++.....
T Consensus 6 ~~~~~~~~v~~~~~~vLL~~r~~~-----~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~~ 80 (132)
T cd04677 6 ILVGAGVILLNEQGEVLLQKRSDT-----GDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVYSGKEFYVKPN 80 (132)
T ss_pred cccceEEEEEeCCCCEEEEEecCC-----CcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEecCCceeecCC
Confidence 456788888998899999998742 68999999999999999999999999999999877776543211
Q ss_pred cCCC-ceEEEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCCc
Q 023855 180 QSFF-EKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 180 ~~~~-~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
.... .....+|++.. ....+..+.+|..+++|++++++.++...
T Consensus 81 ~~~~~~~~~~~~~~~~--~~~~~~~~~~e~~~~~W~~~~e~~~~~~~ 125 (132)
T cd04677 81 GDDEQYIVTLYYVTKV--FGGKLVPDGDETLELKFFSLDELPELINP 125 (132)
T ss_pred CCcEEEEEEEEEEEec--cCCcccCCCCceeeEEEEChhHCccchhH
Confidence 1111 12223344432 22333456688999999999999887654
No 29
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=3.1e-19 Score=138.28 Aligned_cols=108 Identities=19% Similarity=0.246 Sum_probs=80.7
Q ss_pred EEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEE
Q 023855 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIFF 190 (276)
Q Consensus 111 v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f 190 (276)
|+++++++ ++|||+||...+...+|.|+||||++++||++.+||+||++||||+++.....+........ .....++|
T Consensus 3 v~~vi~~~-~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~-~~~~~~~~ 80 (117)
T cd04691 3 VVGVLFSD-DKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLCSLYHPTS-ELQLLHYY 80 (117)
T ss_pred EEEEEEEC-CEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEEEEeccCC-CeEEEEEE
Confidence 44556664 89999999876544679999999999999999999999999999999765666655444332 33456677
Q ss_pred EEEEecCCcCcCCCccccceEEEEehhhhhcCCC
Q 023855 191 LCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPY 224 (276)
Q Consensus 191 ~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~ 224 (276)
.+.... ..+ ..+|+.+++|+++++++.+..
T Consensus 81 ~~~~~~--~~~--~~~E~~~~~W~~~~~l~~~~~ 110 (117)
T cd04691 81 VVTFWQ--GEI--PAQEAAEVHWMTANDIVLASE 110 (117)
T ss_pred EEEEec--CCC--CcccccccEEcCHHHcchhhh
Confidence 775432 222 347899999999999987654
No 30
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.82 E-value=2.6e-19 Score=145.91 Aligned_cols=114 Identities=23% Similarity=0.227 Sum_probs=87.8
Q ss_pred EEEEEEEeCC--eeEEEEEeccCCCCCCCcEECCccccCCC-CCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceE
Q 023855 110 GVGAFVMNGK--REVLVVQENSGRFRGTGIWKFPTGVVDEG-EDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKS 186 (276)
Q Consensus 110 ~v~~vv~~~~--~~vLLvkr~~~~~~~~~~W~lPgG~ve~g-Es~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~ 186 (276)
+|.+++.+.+ ++|||+||.......+|.|++|||++++| |++.+||+||++||||+++.....++.........+..
T Consensus 4 av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~ 83 (157)
T cd03426 4 AVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYTRSGFV 83 (157)
T ss_pred EEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEECCCccccCCCE
Confidence 5666666644 69999999876543579999999999999 99999999999999999998877777654433333455
Q ss_pred EEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCC
Q 023855 187 DIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPY 224 (276)
Q Consensus 187 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~ 224 (276)
.++|++..... ..+.++++|+.+++|++++++.+...
T Consensus 84 v~~~~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~~~~ 120 (157)
T cd03426 84 VTPVVGLVPPP-LPLVLNPDEVAEVFEVPLSFLLDPAN 120 (157)
T ss_pred EEEEEEEECCC-CCCCCCHHHhheeEEEcHHHHhCcCC
Confidence 56677765432 34556778999999999999988643
No 31
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.81 E-value=5.6e-19 Score=140.21 Aligned_cols=119 Identities=24% Similarity=0.355 Sum_probs=86.0
Q ss_pred EEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC--CceEEE
Q 023855 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSF--FEKSDI 188 (276)
Q Consensus 111 v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~--~~~~~~ 188 (276)
+.+++.+ +++|||++|...+ .++.|.+|||++++||++.+||+||++||||+++.....++........ .....+
T Consensus 4 ~~~~i~~-~~~vLL~~r~~~~--~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (137)
T cd03427 4 TLCFIKD-PDKVLLLNRKKGP--GWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIKFPFPGEEERYGVF 80 (137)
T ss_pred EEEEEEE-CCEEEEEEecCCC--CCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEEEEEEcCCCCcEEEEE
Confidence 4455666 4899999998765 4689999999999999999999999999999999888888776544332 334455
Q ss_pred EEEEEEecCCcCcCCCccccceEEEEehhhhhcCCCc-chHHHHHHHH
Q 023855 189 FFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV-QNQELLKYIV 235 (276)
Q Consensus 189 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~-~~~~~i~~~~ 235 (276)
+|+|... ..... ...|..+++|++++++.++++. .+..++..++
T Consensus 81 ~f~~~~~--~~~~~-~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 125 (137)
T cd03427 81 VFLATEF--EGEPL-KESEEGILDWFDIDDLPLLPMWPGDREWLPLML 125 (137)
T ss_pred EEEECCc--ccccC-CCCccccceEEcHhhcccccCCCCcHHHHHHHh
Confidence 5555332 22222 3456678999999999987765 3444444433
No 32
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.81 E-value=1.7e-19 Score=145.00 Aligned_cols=109 Identities=23% Similarity=0.321 Sum_probs=76.5
Q ss_pred EEEEEEEeCC-eeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEE
Q 023855 110 GVGAFVMNGK-REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDI 188 (276)
Q Consensus 110 ~v~~vv~~~~-~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~ 188 (276)
.+++++++++ ++|||+|+.+. +.|+||||++++||++.+||+||++||||+.+........ .......+...+
T Consensus 3 ~~gaii~~~~~~~vLLvr~~~~-----~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~~~~-~~~~~~~~~~~~ 76 (145)
T cd03672 3 VYGAIILNEDLDKVLLVKGWKS-----KSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYIDKDD-YIELIIRGQNVK 76 (145)
T ss_pred eeEEEEEeCCCCEEEEEEecCC-----CCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccccce-eeecccCCcEEE
Confidence 5788888864 69999998642 4899999999999999999999999999999865322111 111122234455
Q ss_pred EEEEEEecCCcCcCC-CccccceEEEEehhhhhcCCC
Q 023855 189 FFLCMLRPLSFDIQK-QESEIEAAEWMPLEEYAAQPY 224 (276)
Q Consensus 189 ~f~~~~~~~~~~~~~-~~~E~~~~~Wv~~~el~~~~~ 224 (276)
+|++..........+ +.+|+.+++|++++++.++..
T Consensus 77 ~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~ 113 (145)
T cd03672 77 LYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKN 113 (145)
T ss_pred EEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhh
Confidence 666643222222222 357899999999999988643
No 33
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.81 E-value=2.3e-19 Score=150.00 Aligned_cols=115 Identities=21% Similarity=0.177 Sum_probs=92.5
Q ss_pred eEEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEE
Q 023855 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDI 188 (276)
Q Consensus 109 v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~ 188 (276)
.+|.+++++++++|||+++.+.+. +...|+||||.+|+||++.+||+||++||||+++..+..++.+...++......+
T Consensus 48 ~~v~v~~~~~~~~vlLvrq~r~~~-~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~~~~~~~~ 126 (185)
T PRK11762 48 GAVMIVPILDDDTLLLIREYAAGT-ERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSLAPSYFSSKMN 126 (185)
T ss_pred CEEEEEEEeCCCEEEEEEeecCCC-CCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecCCCccCcEEE
Confidence 357777777788999999987764 4578999999999999999999999999999999999999887777776777778
Q ss_pred EEEEEEecCCcCcCCCccccceEEEEehhhhhcCCCc
Q 023855 189 FFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 189 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
+|++...... ....++.|..++.|+|++++.++...
T Consensus 127 ~f~a~~~~~~-~~~~~e~E~i~~~~~~~~e~~~~~~~ 162 (185)
T PRK11762 127 IVLAEDLYPE-RLEGDEPEPLEVVRWPLADLDELLAR 162 (185)
T ss_pred EEEEEccccc-cCCCCCCceeEEEEEcHHHHHHHHHc
Confidence 8888543221 23345677788999999999876443
No 34
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=6.6e-19 Score=138.39 Aligned_cols=113 Identities=25% Similarity=0.436 Sum_probs=82.1
Q ss_pred eEEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeec--------c
Q 023855 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSH--------Q 180 (276)
Q Consensus 109 v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~--------~ 180 (276)
.+|+++|++ +++|||++|... +.+.|.+|||++++||++.+||+||++||||+.+...+++...... .
T Consensus 2 ~~a~~iv~~-~~~vLl~~r~~~---~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~ 77 (128)
T cd04687 2 NSAKAVIIK-NDKILLIKHHDD---GGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSELP 77 (128)
T ss_pred cEEEEEEEE-CCEEEEEEEEcC---CCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEEeccCccccCC
Confidence 467788887 579999998754 2478999999999999999999999999999998766655443322 1
Q ss_pred CCCceEEEEEEEEEecCCc-Cc-CCCccccceEEEEehhhhhcCCCc
Q 023855 181 SFFEKSDIFFLCMLRPLSF-DI-QKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 181 ~~~~~~~~~f~~~~~~~~~-~~-~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
...+...++|+|....... .. ...+.+..+++|++++++.++++.
T Consensus 78 ~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~~~~ 124 (128)
T cd04687 78 GHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDIPLY 124 (128)
T ss_pred CceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCccccc
Confidence 1234556778776643321 11 112344568999999999988764
No 35
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.81 E-value=1.6e-18 Score=135.58 Aligned_cols=120 Identities=18% Similarity=0.289 Sum_probs=87.0
Q ss_pred EEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEE
Q 023855 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIF 189 (276)
Q Consensus 110 ~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 189 (276)
.++++|.+.+|+|||+||...+.+ +|.|+||||++++||++.+||.||+.||||+++.....++...+..........+
T Consensus 6 ~~~~ii~~~~~~vll~rR~~~~~~-~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~~~~~~~~~~~~~~~ 84 (129)
T PRK10776 6 IAVGIIRNPNNEIFITRRAADAHM-AGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEKLEYEFPDRHITLWF 84 (129)
T ss_pred EEEEEEECCCCEEEEEEecCCCCC-CCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceEEEEEEeeCCCcEEEEEE
Confidence 344556677789999999877653 5999999999999999999999999999999976666665555444444444555
Q ss_pred EEEEEecCCcCcCCCccccceEEEEehhhhhcCCCc-chHHHHHHH
Q 023855 190 FLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV-QNQELLKYI 234 (276)
Q Consensus 190 f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~-~~~~~i~~~ 234 (276)
|.+.... .. +...|..+++|++++++..++++ ...++++.+
T Consensus 85 ~~~~~~~--~~--~~~~e~~~~~W~~~~~l~~~~~p~~~~~~~~~~ 126 (129)
T PRK10776 85 WLVESWE--GE--PWGKEGQPGRWVSQVALNADEFPPANEPIIAKL 126 (129)
T ss_pred EEEEEEC--Cc--cCCccCCccEEecHHHCccCCCCcccHHHHHHH
Confidence 6554321 11 22356778899999999998887 445554443
No 36
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.81 E-value=5.9e-19 Score=139.46 Aligned_cols=123 Identities=21% Similarity=0.305 Sum_probs=90.0
Q ss_pred EEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEE
Q 023855 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIF 189 (276)
Q Consensus 110 ~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 189 (276)
+|.+++.+++++|||++|++.+ ++.|.+|||+++.||++.+||.||++||||+++.....++...... .....++
T Consensus 2 ~v~i~l~~~~~~vLL~~r~~~~---~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~~~~~~--~~~~~~~ 76 (131)
T cd03429 2 AVIVLVIDGGDRILLARQPRFP---PGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGSQPWPF--PSSLMLG 76 (131)
T ss_pred eEEEEEEeCCCEEEEEEecCCC---CCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEeecCCCC--CceEEEE
Confidence 4556677777899999998653 4899999999999999999999999999999998777776533222 2345667
Q ss_pred EEEEEecCCcCcCCCccccceEEEEehhhhhcC----CC-cchHHHHHHHHHHHH
Q 023855 190 FLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQ----PY-VQNQELLKYIVDICS 239 (276)
Q Consensus 190 f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~----~~-~~~~~~i~~~~~~~~ 239 (276)
|+|.... .....+++|+.+++|++++++.++ +. +....+...+++..+
T Consensus 77 f~~~~~~--~~~~~~~~E~~~~~w~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (131)
T cd03429 77 FTAEADS--GEIVVDDDELEDARWFSRDEVRAAGEGLPELPPPGSIARQLIEAWL 129 (131)
T ss_pred EEEEEcC--CcccCCchhhhccEeecHHHHhhcccCCccCCCcchHHHHHHHHHh
Confidence 7776543 345567789999999999998874 21 133444555554443
No 37
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=7.2e-19 Score=137.50 Aligned_cols=109 Identities=29% Similarity=0.419 Sum_probs=82.8
Q ss_pred EEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEE
Q 023855 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIF 189 (276)
Q Consensus 110 ~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 189 (276)
.+++++++.+++|||++|.+.+ .++.|.+|||+++.||++.+||+||++||||+++.....+...... .....++
T Consensus 2 ~~~~vv~~~~~~vLl~~r~~~~--~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~---~~~~~~~ 76 (123)
T cd04671 2 IVAAVILNNQGEVLLIQEAKRS--CRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVEEQG---GSWFRFV 76 (123)
T ss_pred EEEEEEEcCCCEEEEEEecCCC--CCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEEEccC---CeEEEEE
Confidence 3677888888999999998655 3589999999999999999999999999999999888877654332 2345667
Q ss_pred EEEEEecCCcCc-CCCccccceEEEEehhhhhcCCC
Q 023855 190 FLCMLRPLSFDI-QKQESEIEAAEWMPLEEYAAQPY 224 (276)
Q Consensus 190 f~~~~~~~~~~~-~~~~~E~~~~~Wv~~~el~~~~~ 224 (276)
|.|......... ..++.|+.+++|++++++ .+++
T Consensus 77 f~a~~~~g~~~~~~~~~~e~~~~~W~~~~el-~~~~ 111 (123)
T cd04671 77 FTGNITGGDLKTEKEADSESLQARWYSNKDL-PLPL 111 (123)
T ss_pred EEEEEeCCeEccCCCCCcceEEEEEECHHHC-CCcc
Confidence 777654332221 123467889999999999 3444
No 38
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=9.9e-19 Score=136.48 Aligned_cols=109 Identities=26% Similarity=0.484 Sum_probs=84.4
Q ss_pred eeEEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC-----
Q 023855 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSF----- 182 (276)
Q Consensus 108 ~v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~----- 182 (276)
+++|+++|+++ ++|||+++++ .+.|.+|||++++||++.+||.||++||||+.+....+++........
T Consensus 2 ~~~v~~~i~~~-~~vLL~~~~~-----~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~ 75 (123)
T cd04672 2 KVDVRAAIFKD-GKILLVREKS-----DGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDRNKHHPPPQP 75 (123)
T ss_pred cceEEEEEEEC-CEEEEEEEcC-----CCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEeccccccCCCCc
Confidence 57888999985 8999999875 378999999999999999999999999999999777777665432211
Q ss_pred CceEEEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCCc
Q 023855 183 FEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 183 ~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
.+....+|+|.... ..+... +|+.+++|++++++.++.++
T Consensus 76 ~~~~~~~f~~~~~~--~~~~~~-~E~~~~~W~~~~el~~l~~~ 115 (123)
T cd04672 76 YQVYKLFFLCEILG--GEFKPN-IETSEVGFFALDDLPPLSEK 115 (123)
T ss_pred eEEEEEEEEEEecC--CcccCC-CceeeeEEECHHHCcccccC
Confidence 22345567776543 223333 78899999999999998765
No 39
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.80 E-value=1.8e-18 Score=138.92 Aligned_cols=117 Identities=26% Similarity=0.452 Sum_probs=87.1
Q ss_pred CcceeEEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC-C
Q 023855 105 ASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSF-F 183 (276)
Q Consensus 105 ~~~~v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~-~ 183 (276)
..+.++|++++... ++|||+||...| ..|.|.+|||+++.||++++||.||++||||++++..+++++++..... .
T Consensus 7 ~~p~~~v~~~i~~~-~~iLLvrR~~~p--~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~~~~~rd~r 83 (145)
T COG1051 7 RTPLVAVGALIVRN-GRILLVRRANEP--GAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAVFDDPGRDPR 83 (145)
T ss_pred CCcceeeeEEEEeC-CEEEEEEecCCC--CCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEEEecCCCCCCc
Confidence 45567888888874 499999999988 4589999999999999999999999999999999999999887766442 1
Q ss_pred -ceEEEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCCc
Q 023855 184 -EKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 184 -~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
....++|++... .......+..+...+.|++++++..+..+
T Consensus 84 ~~~v~~~~~~~~~-~g~~~~~~~~d~~~~~~~~~~~l~~~~~~ 125 (145)
T COG1051 84 GHHVSFLFFAAEP-EGELLAGDGDDAAEVGWFPLDELPELPLP 125 (145)
T ss_pred eeEEEEEEEEEec-CCCcccCChhhHhhcceecHhHccccccc
Confidence 222333333222 12122223347888999999999985443
No 40
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=1.4e-18 Score=135.74 Aligned_cols=111 Identities=26% Similarity=0.421 Sum_probs=82.5
Q ss_pred eeEEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeec---c----
Q 023855 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSH---Q---- 180 (276)
Q Consensus 108 ~v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~---~---- 180 (276)
+.+|+++|+++++++||++|... +.|.+|||++++||++.+||.||++||||+++.....++..... .
T Consensus 2 ~~~v~~ii~~~~~~vLl~~r~~~-----~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~ 76 (129)
T cd04676 2 LPGVTAVVRDDEGRVLLIRRSDN-----GLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTYPN 76 (129)
T ss_pred cceEEEEEECCCCeEEEEEecCC-----CcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeecccceeecCC
Confidence 35788888888899999998752 78999999999999999999999999999998776664332111 1
Q ss_pred CC-CceEEEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCCc
Q 023855 181 SF-FEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 181 ~~-~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
.. .....++|++.... .....+..|..+++|++++++.++.++
T Consensus 77 ~~~~~~~~~~~~~~~~~--~~~~~~~~e~~~~~w~~~~el~~~~~~ 120 (129)
T cd04676 77 GDVRQYLDITFRCRVVG--GELRVGDDESLDVAWFDPDGLPPLLMH 120 (129)
T ss_pred CCcEEEEEEEEEEEeeC--CeecCCCCceeEEEEEChhhCccccCC
Confidence 10 12344556664432 222245578889999999999998876
No 41
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=8.9e-19 Score=137.20 Aligned_cols=114 Identities=26% Similarity=0.385 Sum_probs=82.8
Q ss_pred eEEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC--CceE
Q 023855 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSF--FEKS 186 (276)
Q Consensus 109 v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~--~~~~ 186 (276)
++|+++|++++++|||+||...+...+|.|++|||++++||++.+||+||++||||+.+.....+.....+... ....
T Consensus 2 ~~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~ 81 (129)
T cd04699 2 VAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRYPSTVTHEDSGVYNVI 81 (129)
T ss_pred ceEEEEEECCCCcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeeeeeEEEEEcCCCEEEEE
Confidence 46777888877899999998776545689999999999999999999999999999998776664322222221 2233
Q ss_pred EEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCCc
Q 023855 187 DIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 187 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
.++|.|..... ....+.|..+++|++++++..+.++
T Consensus 82 ~~~~~~~~~~~---~~~~~~e~~~~~w~~~~el~~~~~~ 117 (129)
T cd04699 82 YLVFVCEALSG---AVKLSDEHEEYAWVTLEELAILKAD 117 (129)
T ss_pred EEEEEeeecCC---cccCChhheEEEEecHHHhhhhhcc
Confidence 34455433221 2234568889999999998776655
No 42
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.79 E-value=1.9e-18 Score=136.28 Aligned_cols=112 Identities=21% Similarity=0.288 Sum_probs=86.1
Q ss_pred CCCCcceeEEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccC
Q 023855 102 PANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQS 181 (276)
Q Consensus 102 p~~~~~~v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~ 181 (276)
..+.++.++|++++++ +++|||++|...+ ..|.|.+|||++++||++.+||.||++||||+++....+++......
T Consensus 7 ~~~~~~~~~v~~ii~~-~~~vLL~kr~~~~--~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~~~~~~~~~- 82 (130)
T cd04511 7 IHYQNPKIIVGCVPEW-EGKVLLCRRAIEP--RHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVYSVPH- 82 (130)
T ss_pred ccCCCCcEEEEEEEec-CCEEEEEEecCCC--CCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeEEEEEecCC-
Confidence 3345667778888777 4899999997655 45899999999999999999999999999999997766666554322
Q ss_pred CCceEEEEEEEEEecCCcCcCCCccccceEEEEehhhhhc
Q 023855 182 FFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAA 221 (276)
Q Consensus 182 ~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~ 221 (276)
.....++|++..... .+. ...|..+++|++++++..
T Consensus 83 -~~~~~~~f~~~~~~~--~~~-~~~e~~~~~~~~~~~l~~ 118 (130)
T cd04511 83 -ISQVYMFYRARLLDL--DFA-PGPESLEVRLFTEEEIPW 118 (130)
T ss_pred -ceEEEEEEEEEEcCC--ccc-CCcchhceEEECHHHCCc
Confidence 345677888876432 222 346788899999999973
No 43
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.79 E-value=5.1e-18 Score=132.90 Aligned_cols=119 Identities=18% Similarity=0.213 Sum_probs=88.6
Q ss_pred eEEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEE
Q 023855 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDI 188 (276)
Q Consensus 109 v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~ 188 (276)
..+++++++.++++||++|...+.+ .|.|+||||.++.||++.+|++||+.||||+.+.....++...+..++......
T Consensus 5 ~~~~~ii~~~~~~vLl~~R~~~~~~-~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~~~~~h~~~~~~~~~~ 83 (128)
T TIGR00586 5 QIAVGIIRNENGEIIITRRADGHMF-AKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFEKLEYEFYPRHITLWF 83 (128)
T ss_pred EEEEEEEECCCCEEEEEEEeCCCCC-CCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEEEECCCcEEEEE
Confidence 3455566677789999999877654 499999999999999999999999999999998777666665555555455566
Q ss_pred EEEEEEecCCcCcCCCccccceEEEEehhhhhcCCCc-chHHHHH
Q 023855 189 FFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV-QNQELLK 232 (276)
Q Consensus 189 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~-~~~~~i~ 232 (276)
+|.+..... .. ...+..+++|++++++.+++++ ...++++
T Consensus 84 ~~~~~~~~~--~~--~~~~~~~~~W~~~~~l~~~~~p~~~~~~~~ 124 (128)
T TIGR00586 84 WLLERWEGG--PP--GKEGQPEEWWVLVGLLADDFFPAANPVIIK 124 (128)
T ss_pred EEEEEEcCC--Cc--CcccccccEEeCHHHCCccCCCCCCHHHHH
Confidence 666654321 11 1345667899999999999887 4455443
No 44
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.79 E-value=2.2e-18 Score=143.41 Aligned_cols=113 Identities=23% Similarity=0.218 Sum_probs=84.6
Q ss_pred eeEEEEEEEeCCeeEEEEEeccCCCCCCCcE-ECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceE
Q 023855 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIW-KFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKS 186 (276)
Q Consensus 108 ~v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W-~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~ 186 (276)
..++.++|+|++++|||++|...+.+.+|.| .+|||++++||++.+||+|||+||||+.+.....++............
T Consensus 37 h~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~~~~~~~~~~~~~~ 116 (180)
T PRK15393 37 HRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEHGQFYFEDENCRVW 116 (180)
T ss_pred eEEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceeceeEEecCCCceEE
Confidence 3457788889889999999876554456777 479999999999999999999999999876665555544433333334
Q ss_pred EEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCC
Q 023855 187 DIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQP 223 (276)
Q Consensus 187 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~ 223 (276)
..+|.+.. .....+++.|+.+++|++++++.++.
T Consensus 117 ~~~f~~~~---~~~~~~~~~E~~~~~W~~~~el~~~~ 150 (180)
T PRK15393 117 GALFSCVS---HGPFALQEEEVSEVCWMTPEEITARC 150 (180)
T ss_pred EEEEEEEe---CCCCCCChHHeeEEEECCHHHHhhhh
Confidence 45565543 23455677899999999999999873
No 45
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.79 E-value=2.5e-18 Score=150.29 Aligned_cols=132 Identities=19% Similarity=0.201 Sum_probs=99.4
Q ss_pred CCCCCCcceeEEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeec
Q 023855 100 TLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSH 179 (276)
Q Consensus 100 ~~p~~~~~~v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~ 179 (276)
....++.+..+|.++|.+ +++|||+++++.+ +|.|.+|||++++||++++||+||++||||+++....+++...+.
T Consensus 124 ~~~~yp~~~paViv~V~~-~~~iLL~rr~~~~---~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s~~~~ 199 (256)
T PRK00241 124 RERYYPRIAPCIIVAVRR-GDEILLARHPRHR---NGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGSQPWP 199 (256)
T ss_pred CCEECCCCCCEEEEEEEe-CCEEEEEEccCCC---CCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEeEeec
Confidence 344445555566555554 6899999988764 489999999999999999999999999999999888887765432
Q ss_pred cCCCceEEEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCCcchHHHHHHHHHHHHhh
Q 023855 180 QSFFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYVQNQELLKYIVDICSAK 241 (276)
Q Consensus 180 ~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~i~~~~~~~~~~ 241 (276)
. .....+.|.+... ...+..+++|+.+++|+++++++.++.. ..+.+.+++..+++
T Consensus 200 ~--p~~lm~~f~a~~~--~~~~~~~~~Ei~~a~W~~~del~~lp~~--~sia~~li~~~~~~ 255 (256)
T PRK00241 200 F--PHSLMLGFHADYD--SGEIVFDPKEIADAQWFRYDELPLLPPS--GTIARRLIEDTVAL 255 (256)
T ss_pred C--CCeEEEEEEEEec--CCcccCCcccEEEEEEECHHHCcccCCc--hHHHHHHHHHHHHh
Confidence 2 2345677877664 3346667789999999999999887654 45667777766543
No 46
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=9.7e-19 Score=137.24 Aligned_cols=111 Identities=23% Similarity=0.282 Sum_probs=79.0
Q ss_pred EEEEEEEeCCeeEEEEEeccCCCCCCCcEECC-ccccCCCCCHHHHHHHHHHHHhCCcceeeEE--EEEEeeccCCCceE
Q 023855 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGEDICVAAVREVKEETSIDTEFVEV--LAFRQSHQSFFEKS 186 (276)
Q Consensus 110 ~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lP-gG~ve~gEs~~eaA~REl~EEtGl~~~~~~~--l~~~~~~~~~~~~~ 186 (276)
+|.+++++++|+|||++|.......+|.|++| ||++++||++ +||+||++||||+++..... +........ ....
T Consensus 2 ~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~-~~~~ 79 (127)
T cd04693 2 VVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAE-GFDD 79 (127)
T ss_pred eEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecC-CeEE
Confidence 47788889889999999986554456899998 8999999999 99999999999999764333 333222221 1112
Q ss_pred EEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCC
Q 023855 187 DIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPY 224 (276)
Q Consensus 187 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~ 224 (276)
..+|.+ ........++.+|+.+++|++++++.++..
T Consensus 80 ~~~~~~--~~~~~~~~~~~~E~~~~~w~~~~el~~~~~ 115 (127)
T cd04693 80 YYLFYA--DVEIGKLILQKEEVDEVKFVSKDEIDGLIG 115 (127)
T ss_pred EEEEEe--cCcccccccCHHHhhhEEEeCHHHHHHHHh
Confidence 222322 222334556678999999999999987654
No 47
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.79 E-value=1.4e-18 Score=136.63 Aligned_cols=111 Identities=29% Similarity=0.305 Sum_probs=84.3
Q ss_pred EEEEEEEeC--CeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee----ccCC-
Q 023855 110 GVGAFVMNG--KREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQS----HQSF- 182 (276)
Q Consensus 110 ~v~~vv~~~--~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~----~~~~- 182 (276)
+|.+++++. +++|||+||.+. .++.|.+|||+++.||++.+||+||++||||+.+.....+..... ....
T Consensus 3 ~~~v~~~~~~~~~~vLL~~r~~~---~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~ 79 (129)
T cd04664 3 SVLVVPYRLTGEGRVLLLRRSDK---YAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTDN 79 (129)
T ss_pred EEEEEEEEeCCCCEEEEEEeCCC---CCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccccccCCC
Confidence 577888886 899999999875 358999999999999999999999999999999866666554321 1111
Q ss_pred -CceEEEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCCc
Q 023855 183 -FEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 183 -~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
.....++|++.+.... ....++|+.+++|++++++.++...
T Consensus 80 ~~~~~~~~f~~~~~~~~--~~~~~~E~~~~~W~~~~e~~~~~~~ 121 (129)
T cd04664 80 GRVWTEHPFAFHLPSDA--VVTLDWEHDAFEWVPPEEAAALLLW 121 (129)
T ss_pred ceEEEEeEEEEEcCCCC--cccCCccccccEecCHHHHHHHHcC
Confidence 2245667777654332 2335578899999999999987654
No 48
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=1.8e-18 Score=138.78 Aligned_cols=115 Identities=18% Similarity=0.279 Sum_probs=84.5
Q ss_pred eEEEEEEEeCC---eeEEEEEeccCCCCCCCcEEC-CccccCCCCCHHHHHHHHHHHHhCCccee--eEEEEEEeeccC-
Q 023855 109 VGVGAFVMNGK---REVLVVQENSGRFRGTGIWKF-PTGVVDEGEDICVAAVREVKEETSIDTEF--VEVLAFRQSHQS- 181 (276)
Q Consensus 109 v~v~~vv~~~~---~~vLLvkr~~~~~~~~~~W~l-PgG~ve~gEs~~eaA~REl~EEtGl~~~~--~~~l~~~~~~~~- 181 (276)
.+|.++|+|.+ +++|+++|.......+|.|++ |||++++||++.+||+||++||||+.+.. +..++.......
T Consensus 3 ~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~ 82 (144)
T cd04692 3 RTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTFKIEYDH 82 (144)
T ss_pred eEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEEEEeccc
Confidence 35788899966 899999998765456799999 59999999999999999999999998643 344444333221
Q ss_pred ----CCceEEEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCC
Q 023855 182 ----FFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQP 223 (276)
Q Consensus 182 ----~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~ 223 (276)
......++|++........+.++++|+.+++|++++++.++.
T Consensus 83 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 128 (144)
T cd04692 83 IGKLIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAELL 128 (144)
T ss_pred cCCCccceEEEEEEEeccCChhhcCCChhHhheEEEECHHHHHHHH
Confidence 112345677776543223445667899999999999997654
No 49
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.78 E-value=7e-18 Score=130.63 Aligned_cols=116 Identities=28% Similarity=0.439 Sum_probs=88.3
Q ss_pred EEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEE
Q 023855 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIFF 190 (276)
Q Consensus 111 v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f 190 (276)
+.++++++++++||++|...+. .+|.|.||||+++.+|++.++|.||+.||||+++.....++...+..........+|
T Consensus 4 ~~~~i~~~~~~~Ll~~r~~~~~-~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (124)
T cd03425 4 VAAIIIDDDGRILIAQRPAGKH-LGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELLATVEHDYPDKRVTLHVF 82 (124)
T ss_pred EEEEEECCCCEEEEEEeCCCCC-CCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceEEEEEeeCCCCeEEEEEE
Confidence 4455567668999999987764 469999999999999999999999999999999877777766665555555566667
Q ss_pred EEEEecCCcCcCCCccccceEEEEehhhhhcCCCc-chHHHH
Q 023855 191 LCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV-QNQELL 231 (276)
Q Consensus 191 ~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~-~~~~~i 231 (276)
.+..... . ....|..++.|++++++.+++++ .+++++
T Consensus 83 ~~~~~~~--~--~~~~e~~~~~W~~~~el~~~~~~~~~~~~l 120 (124)
T cd03425 83 LVELWSG--E--PQLLEHQELRWVPPEELDDLDFPPADVPIV 120 (124)
T ss_pred EEeeeCC--C--cccccCceEEEeeHHHcccCCCCcccHHHH
Confidence 6654322 1 12457788999999999999887 444443
No 50
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=4.5e-18 Score=133.18 Aligned_cols=110 Identities=21% Similarity=0.331 Sum_probs=81.9
Q ss_pred EEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc----CCCce
Q 023855 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQ----SFFEK 185 (276)
Q Consensus 110 ~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~----~~~~~ 185 (276)
.|.+++++ +++|||+++.. .+.|.+|||++++||++.+||.||++||||+++.....++...... ...+.
T Consensus 3 ~v~~vi~~-~~~vLl~~~~~-----~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 76 (126)
T cd04688 3 RAAAIIIH-NGKLLVQKNPD-----ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHE 76 (126)
T ss_pred EEEEEEEE-CCEEEEEEeCC-----CCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcccEE
Confidence 45666666 45999998874 3789999999999999999999999999999998887776543211 11344
Q ss_pred EEEEEEEEEecCCcCc-----CCCccccceEEEEehhhhhcCCCc
Q 023855 186 SDIFFLCMLRPLSFDI-----QKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 186 ~~~~f~~~~~~~~~~~-----~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
..++|.|......... ..++.|+.+++|++++++..+++.
T Consensus 77 ~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~ 121 (126)
T cd04688 77 IEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEIKLY 121 (126)
T ss_pred EEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHcccCccC
Confidence 5678888664332211 124578999999999999987664
No 51
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.78 E-value=3.8e-18 Score=133.44 Aligned_cols=109 Identities=19% Similarity=0.234 Sum_probs=78.9
Q ss_pred eEEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccC----CCc
Q 023855 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQS----FFE 184 (276)
Q Consensus 109 v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~----~~~ 184 (276)
+.|+++|++ +++|||+++.. .+.|.+|||++++||++.+||+||++||||+++.....++....... ...
T Consensus 2 ~~~~~vi~~-~~~vLlv~~~~-----~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~ 75 (125)
T cd04689 2 LRARAIVRA-GNKVLLARVIG-----QPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAIENQWHEKGVRTH 75 (125)
T ss_pred eEEEEEEEe-CCEEEEEEecC-----CCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEEEEEEeeeeccCCceEE
Confidence 457777775 67999999863 36899999999999999999999999999999988877765443211 122
Q ss_pred eEEEEEEEEEecCCcC-cCCCccccceEEEEehhhhhcCC
Q 023855 185 KSDIFFLCMLRPLSFD-IQKQESEIEAAEWMPLEEYAAQP 223 (276)
Q Consensus 185 ~~~~~f~~~~~~~~~~-~~~~~~E~~~~~Wv~~~el~~~~ 223 (276)
...++|.+........ ....++|+.+++|++++++...+
T Consensus 76 ~~~~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~p 115 (125)
T cd04689 76 EINHIFAVESSWLASDGPPQADEDHLSFSWVPVSDLSLYP 115 (125)
T ss_pred EEEEEEEEEcccccccCCccCccceEEEEEccHHHcccCc
Confidence 3456676654432211 22334678999999999976443
No 52
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=3.2e-18 Score=132.30 Aligned_cols=106 Identities=22% Similarity=0.381 Sum_probs=79.9
Q ss_pred EEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCccee--eEEEEEEeeccCC---Cce
Q 023855 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEF--VEVLAFRQSHQSF---FEK 185 (276)
Q Consensus 111 v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~--~~~l~~~~~~~~~---~~~ 185 (276)
+++++++.++++||++|+. .+.|.+|||++++||++.+||.||++||||+.+.. ...++.+...... ...
T Consensus 3 ~~~~v~~~~~~vLl~~r~~-----~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (118)
T cd04690 3 AAALILVRDGRVLLVRKRG-----TDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDV 77 (118)
T ss_pred EEEEEEecCCeEEEEEECC-----CCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCcEE
Confidence 5667777788999998863 37899999999999999999999999999999877 7776655442221 234
Q ss_pred EEEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCCc
Q 023855 186 SDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 186 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
..++|++.... .+ ....|+.+++|++++++....+.
T Consensus 78 ~~~~f~~~~~~---~~-~~~~e~~~~~W~~~~e~~~~~~~ 113 (118)
T cd04690 78 RATVYVAELTG---EP-VPAAEIEEIRWVDYDDPADDRLA 113 (118)
T ss_pred EEEEEEEcccC---Cc-CCCchhhccEEecHHHccccccC
Confidence 55666665432 22 23478899999999998776654
No 53
>PLN03143 nudix hydrolase; Provisional
Probab=99.77 E-value=2.1e-17 Score=145.79 Aligned_cols=219 Identities=18% Similarity=0.177 Sum_probs=133.2
Q ss_pred cccccCccccccccccccccCCcEEEecCCCCChHHHHHHHHHHH-HHHHHcCccEEEEEcccccccchHHHHhcCceee
Q 023855 3 ASVNSSSATVNKFLNGINDNYGGVVVQMNEPMDPQLFASLLKSSI-SHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFH 81 (276)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~d~~~g~~v~~~~~~~~~~f~~~l~~~l-~~w~~~~~~~iw~~~~~~~~~l~~~~~~~gf~~h 81 (276)
.+++++++..+..|.-....-..|.|...+..+.++|.+.+...+ ++|-..-....=+. ..+...+.++.++ +..+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~-~vd~f 98 (291)
T PLN03143 21 ASSSSSSSPLTHSITLPGQPGQPVLVVAAPGISSSDFRKAIDSSLFRQWLKNLQSESGIL-AYGSMSLKQVLIQ-GVDMF 98 (291)
T ss_pred hccCCCCCCceeEEEccCCCCCceeEecCCCCCHHHHHhHhcChHHHHHHHHhhhccccc-cCCCceeEEEEEE-EEecc
Confidence 456666777888887776667789998877788999988877766 78866543321000 0001111111110 11111
Q ss_pred eecCceEEEEee---cCCCCCCCCCCCc-ceeEEEEEEE-eCCee--EEEEEeccCCCCCCCcEECCccccCC-CCCHHH
Q 023855 82 HAEPNYLMLVYW---IPGGANTLPANAS-HRVGVGAFVM-NGKRE--VLVVQENSGRFRGTGIWKFPTGVVDE-GEDICV 153 (276)
Q Consensus 82 ~~~~~~~~l~~~---~~~~~~~~p~~~~-~~v~v~~vv~-~~~~~--vLLvkr~~~~~~~~~~W~lPgG~ve~-gEs~~e 153 (276)
...-.|+.+... ++++. .++.... +..+|+++++ +.+++ ++|+++.+.+. +...|+||||.+|+ +|++.+
T Consensus 99 g~~~gflkv~~d~~~l~~G~-~~~~~v~~rg~aVaVL~~l~~~ge~~VlLVrQ~R~pv-g~~~lE~PAG~lD~~~edp~~ 176 (291)
T PLN03143 99 GKRIGFLKFKADIIDKETGQ-KVPGIVFARGPAVAVLILLESEGETYAVLTEQVRVPV-GKFVLELPAGMLDDDKGDFVG 176 (291)
T ss_pred cCceeEEEEEEEEEECCCCC-EeeEEEEEcCCeEEEEEEEeCCCCEEEEEEEeEecCC-CcEEEEecccccCCCCCCHHH
Confidence 222233333221 24443 3444423 3345666655 43444 99999998765 45789999999997 589999
Q ss_pred HHHHHHHHHhCCccee--eEEEE---------EEeeccCCCceEEEEEEEEEecCCc---------CcCCCccccceEEE
Q 023855 154 AAVREVKEETSIDTEF--VEVLA---------FRQSHQSFFEKSDIFFLCMLRPLSF---------DIQKQESEIEAAEW 213 (276)
Q Consensus 154 aA~REl~EEtGl~~~~--~~~l~---------~~~~~~~~~~~~~~~f~~~~~~~~~---------~~~~~~~E~~~~~W 213 (276)
||+||++||||+.+.. +..+. .++...+......++|++....... ....+++|..++.|
T Consensus 177 aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~~v~pspG~~dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~ 256 (291)
T PLN03143 177 TAVREVEEETGIKLKLEDMVDLTAFLDPSTGCRMFPSPGGCDEEISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHV 256 (291)
T ss_pred HHHHHHHHHHCCccccceEEEeeeccccCcCceEEecCCccCCeEEEEEEccccchhhhcccccccCCCCCCCcEEEEEE
Confidence 9999999999998642 22232 3445555566677788874432111 11235578889999
Q ss_pred EehhhhhcCCCc
Q 023855 214 MPLEEYAAQPYV 225 (276)
Q Consensus 214 v~~~el~~~~~~ 225 (276)
++++++.++..+
T Consensus 257 vpl~eiw~~~aD 268 (291)
T PLN03143 257 VPYRELWRMTAD 268 (291)
T ss_pred EEHHHHHHHHHh
Confidence 999999887643
No 54
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.77 E-value=4e-18 Score=134.04 Aligned_cols=109 Identities=31% Similarity=0.430 Sum_probs=80.7
Q ss_pred eEEEEEEEeCCe---eEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEE----eeccC
Q 023855 109 VGVGAFVMNGKR---EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFR----QSHQS 181 (276)
Q Consensus 109 v~v~~vv~~~~~---~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~----~~~~~ 181 (276)
.++++++++.++ ++||++|+. +.|.+|||++++||++.+||+||++||||+.+.....++.. .....
T Consensus 3 ~~~g~vi~~~~~~~~~vLl~~~~~------~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 76 (130)
T cd03428 3 RSAGAIIYRRLNNEIEYLLLQASY------GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNYQVR 76 (130)
T ss_pred eEEEEEEEEecCCCceEEEEEccC------CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEEEcccc
Confidence 467788887433 799999874 67999999999999999999999999999999876664211 11111
Q ss_pred CCceEEEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCCc
Q 023855 182 FFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 182 ~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
......++|++..... ..+..+ .|..+++|++++++.++...
T Consensus 77 ~~~~~~~~f~~~~~~~-~~~~~~-~E~~~~~W~~~~e~~~~~~~ 118 (130)
T cd03428 77 GKLKTVTYFLAELRPD-VEVKLS-EEHQDYRWLPYEEALKLLTY 118 (130)
T ss_pred CcceEEEEEEEEeCCC-Cccccc-cceeeEEeecHHHHHHHcCc
Confidence 2345667788876522 233334 78999999999999987653
No 55
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=5.1e-18 Score=134.08 Aligned_cols=107 Identities=23% Similarity=0.414 Sum_probs=77.4
Q ss_pred EEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcc-eeeEEEEEEee-c--cC----
Q 023855 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT-EFVEVLAFRQS-H--QS---- 181 (276)
Q Consensus 110 ~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~-~~~~~l~~~~~-~--~~---- 181 (276)
+|+++|++ +++|||+++.+. +.|.||||++++||++.+||+||++||||+.+ .....++.... . ..
T Consensus 2 ~~~~ii~~-~~~vLLv~~~~~-----~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~ 75 (131)
T cd04686 2 AVRAIILQ-GDKILLLYTKRY-----GDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDAD 75 (131)
T ss_pred cEEEEEEE-CCEEEEEEEcCC-----CcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeeccccCCCCc
Confidence 57788887 589999998752 57999999999999999999999999999987 44555554431 1 11
Q ss_pred CCceEEEEEEEEEecCCcCcCCCcccc---ceEEEEehhhhhcC
Q 023855 182 FFEKSDIFFLCMLRPLSFDIQKQESEI---EAAEWMPLEEYAAQ 222 (276)
Q Consensus 182 ~~~~~~~~f~~~~~~~~~~~~~~~~E~---~~~~Wv~~~el~~~ 222 (276)
.++...++|+|.+.........++.|. ..++|++++++.+-
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~ 119 (131)
T cd04686 76 IFHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEH 119 (131)
T ss_pred eeEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHHh
Confidence 123456788887755443444444443 46899999999764
No 56
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=5.1e-18 Score=133.98 Aligned_cols=114 Identities=20% Similarity=0.220 Sum_probs=78.2
Q ss_pred eCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEE---EEEeeccCCCceEEEEEEEE
Q 023855 117 NGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVL---AFRQSHQSFFEKSDIFFLCM 193 (276)
Q Consensus 117 ~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l---~~~~~~~~~~~~~~~~f~~~ 193 (276)
+.+++|||++|... .+|.|.+|||++++||++.+||+||++||||+++...... ...............+|++.
T Consensus 11 ~~~~~vLl~~r~~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 87 (131)
T cd04695 11 DKETKVLLLKRVKT---LGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYEANDNRILMAPVFVGF 87 (131)
T ss_pred CCCCEEEEEEecCC---CCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccccceeeEeecCCceEEEEEEEEEE
Confidence 35679999999865 3589999999999999999999999999999998654322 12222211112234456655
Q ss_pred EecCCcCcCCCccccceEEEEehhhhhcCCCc-chHHHHHHHH
Q 023855 194 LRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV-QNQELLKYIV 235 (276)
Q Consensus 194 ~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~-~~~~~i~~~~ 235 (276)
.... ... ..++|..+++|++++++.++... .++.++..+.
T Consensus 88 ~~~~-~~~-~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~ 128 (131)
T cd04695 88 VPPH-QEV-VLNHEHTEYRWCSFAEALELAPFPGQRALYDHVW 128 (131)
T ss_pred ecCC-Ccc-ccCchhcccEecCHHHHHHhcCChhHHHHHHHHH
Confidence 4322 122 23478999999999999987665 4555555443
No 57
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.76 E-value=1.2e-17 Score=130.49 Aligned_cols=108 Identities=22% Similarity=0.191 Sum_probs=80.0
Q ss_pred EEEEEEEeCC---eeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceee-EEEEEEeeccCC---
Q 023855 110 GVGAFVMNGK---REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFV-EVLAFRQSHQSF--- 182 (276)
Q Consensus 110 ~v~~vv~~~~---~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~-~~l~~~~~~~~~--- 182 (276)
.+++++++.+ ++|||+++.+. +.|.+|||+++.||++.+||+||++||||+++... ..++........
T Consensus 2 ~~g~v~~~~~~~~~~vLLv~~~~~-----~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~~~~~~ 76 (122)
T cd04666 2 QAGAIPYRETGGEVEVLLVTSRRT-----GRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRSKNR 76 (122)
T ss_pred EEEEEEEEEcCCceEEEEEEecCC-----CeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeeecCCCC
Confidence 3667777633 68999998742 78999999999999999999999999999998777 777766544332
Q ss_pred -CceEEEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCC
Q 023855 183 -FEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPY 224 (276)
Q Consensus 183 -~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~ 224 (276)
.....++|.+...... ......+..+++|++++++.++..
T Consensus 77 ~~~~~~~~f~~~~~~~~--~~~~~~e~~~~~W~~~~ea~~~~~ 117 (122)
T cd04666 77 PPRCEVAVFPLEVTEEL--DEWPEMHQRKRKWFSPEEAALLVE 117 (122)
T ss_pred CceEEEEEEEEEEeccc--cCCcccCceEEEEecHHHHHHhcC
Confidence 2345566766654322 222345678999999999987653
No 58
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=1.1e-17 Score=134.11 Aligned_cols=114 Identities=24% Similarity=0.371 Sum_probs=81.2
Q ss_pred eEEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceee----EEEEEEeeccC---
Q 023855 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFV----EVLAFRQSHQS--- 181 (276)
Q Consensus 109 v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~----~~l~~~~~~~~--- 181 (276)
++|+++++|.+++|||+||...+...+|.|.+|||++++||++.+||+||++||||+.+... +.++.......
T Consensus 2 ~~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~ 81 (143)
T cd04694 2 VGVAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLL 81 (143)
T ss_pred cEEEEEEEcCCCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeecccccccc
Confidence 46788889988999999998765335799999999999999999999999999999998653 45544322111
Q ss_pred ---C--CceEEEEEEEEEecC----CcCcCCCccccceEEEEehhhhhcC
Q 023855 182 ---F--FEKSDIFFLCMLRPL----SFDIQKQESEIEAAEWMPLEEYAAQ 222 (276)
Q Consensus 182 ---~--~~~~~~~f~~~~~~~----~~~~~~~~~E~~~~~Wv~~~el~~~ 222 (276)
. ......+|++..... ...+.++++|+.+++|++++++.++
T Consensus 82 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~ 131 (143)
T cd04694 82 SRGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAV 131 (143)
T ss_pred CCCcccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHH
Confidence 1 122233333322211 1134456689999999999998765
No 59
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=1.4e-17 Score=127.82 Aligned_cols=101 Identities=23% Similarity=0.335 Sum_probs=76.7
Q ss_pred EEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEEE
Q 023855 112 GAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIFFL 191 (276)
Q Consensus 112 ~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~ 191 (276)
++++. .+++|||++|.. +.|.+|||++++||++.+||.||++||||+.+.....+..... .....++|+
T Consensus 4 ~~i~~-~~~~vLlv~r~~------~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~----~~~~~~~f~ 72 (112)
T cd04667 4 TVICR-RGGRVLLVRKSG------SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFHVDG----GSTRHHVFV 72 (112)
T ss_pred EEEEe-cCCEEEEEEcCC------CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEEEEeC----CCEEEEEEE
Confidence 34444 468999999863 7899999999999999999999999999999876666654432 123456677
Q ss_pred EEEecCCcCcCCCccccceEEEEehhhhhcCCCc
Q 023855 192 CMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 192 ~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
+.+.. ......+.|+.+++|++++++.++..+
T Consensus 73 ~~~~~--~~~~~~~~e~~~~~W~~~~el~~~~~~ 104 (112)
T cd04667 73 ASVPP--SAQPKPSNEIADCRWLSLDALGDLNAS 104 (112)
T ss_pred EEcCC--cCCCCCchheeEEEEecHHHhhhcccc
Confidence 75432 223334578899999999999998876
No 60
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.75 E-value=7.8e-18 Score=138.27 Aligned_cols=115 Identities=18% Similarity=0.300 Sum_probs=85.6
Q ss_pred eeEEEEEEEeCCeeEEEEEeccCCCCCCCcEECC-ccccCCCCCHHHHHHHHHHHHhCCcceeeEEE-EEEeec--c-CC
Q 023855 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGEDICVAAVREVKEETSIDTEFVEVL-AFRQSH--Q-SF 182 (276)
Q Consensus 108 ~v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lP-gG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l-~~~~~~--~-~~ 182 (276)
+.+|+++|++++++|||+||.......+|.|.+| ||++++||++.+||+||++||||+.+.....+ ...... . ..
T Consensus 30 ~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 109 (165)
T cd02885 30 HRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELVLPRFRYRAPDDGG 109 (165)
T ss_pred eeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhccceEEEEEEcCCC
Confidence 5668888999889999999987665568999996 89999999999999999999999998766654 322211 1 11
Q ss_pred --CceEEEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCCc
Q 023855 183 --FEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 183 --~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
.....++|.+... ....++.+|+.+++|++++++.++...
T Consensus 110 ~~~~~i~~~f~~~~~---~~~~~~~~Ev~~~~w~~~~el~~~~~~ 151 (165)
T cd02885 110 LVEHEIDHVFFARAD---VTLIPNPDEVSEYRWVSLEDLKELVAA 151 (165)
T ss_pred ceeeEEEEEEEEEeC---CCCCCCccceeEEEEECHHHHHHHHHh
Confidence 1123456666542 233446689999999999999876543
No 61
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.75 E-value=2.2e-17 Score=137.98 Aligned_cols=116 Identities=15% Similarity=0.256 Sum_probs=84.7
Q ss_pred ceeEEEEEEEeCCeeEEEEEeccCCCCCCCcEECC-ccccCCCCCHHHHHHHHHHHHhCCcceeeEE-EEEEee---c-c
Q 023855 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGEDICVAAVREVKEETSIDTEFVEV-LAFRQS---H-Q 180 (276)
Q Consensus 107 ~~v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lP-gG~ve~gEs~~eaA~REl~EEtGl~~~~~~~-l~~~~~---~-~ 180 (276)
...+|+++|++++++|||+||.......+|.|.+| ||++++||++.+||+||++||||+++..... ++.... . .
T Consensus 33 ~h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 112 (184)
T PRK03759 33 LHLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLELVLPDFRYRATDPN 112 (184)
T ss_pred eeeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccccccccceEEEEEecCC
Confidence 35668888999889999999876554457889986 8999999999999999999999999864332 222211 1 1
Q ss_pred CC-CceEEEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCCc
Q 023855 181 SF-FEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 181 ~~-~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
.. .....++|++... ..+.++++|+.+++|++++++.++...
T Consensus 113 ~~~~~~~~~vf~~~~~---~~~~~~~~Ev~~~~W~~~~el~~~i~~ 155 (184)
T PRK03759 113 GIVENEVCPVFAARVT---SALQPNPDEVMDYQWVDPADLLRAVDA 155 (184)
T ss_pred CceeeEEEEEEEEEEC---CCCCCChhHeeeEEEECHHHHHHHHHh
Confidence 11 2234557777653 245567789999999999999886443
No 62
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.74 E-value=5.3e-17 Score=137.25 Aligned_cols=120 Identities=12% Similarity=0.037 Sum_probs=96.1
Q ss_pred cceeEEEEEEEeC-CeeEEEEEeccCCCC----CCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc
Q 023855 106 SHRVGVGAFVMNG-KREVLVVQENSGRFR----GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQ 180 (276)
Q Consensus 106 ~~~v~v~~vv~~~-~~~vLLvkr~~~~~~----~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~ 180 (276)
.+..+|++++++. +++|||+++.+.+.. ++-.|++|+|.+|+||++.+||.||+.||||+.+..+..+..+...+
T Consensus 47 ~~~~~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~sp 126 (202)
T PRK10729 47 ERGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVLSYLASP 126 (202)
T ss_pred EcCCeEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEEEEEcCC
Confidence 4445777888875 479999999988752 13579999999999999999999999999999999888888888877
Q ss_pred CCCceEEEEEEEEEecC---CcCcCCCccccceEEEEehhhhhcCCCc
Q 023855 181 SFFEKSDIFFLCMLRPL---SFDIQKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 181 ~~~~~~~~~f~~~~~~~---~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
+......++|++..... ......++.|..++.|+|++++.++...
T Consensus 127 g~~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~ 174 (202)
T PRK10729 127 GGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEE 174 (202)
T ss_pred CcCceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHc
Confidence 77888899999975221 1123346678888999999999987544
No 63
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.74 E-value=3.3e-17 Score=149.15 Aligned_cols=125 Identities=23% Similarity=0.350 Sum_probs=85.9
Q ss_pred ceeEEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEE------Eeecc
Q 023855 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF------RQSHQ 180 (276)
Q Consensus 107 ~~v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~------~~~~~ 180 (276)
..++|+++|++ +|+|||++|...+ ++|.|.+|||++++||++.+||+||++||||+++....+.+. +....
T Consensus 202 ~~vtv~avv~~-~g~VLLvrR~~~p--~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~p~ 278 (340)
T PRK05379 202 TFVTVDAVVVQ-SGHVLLVRRRAEP--GKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDHPG 278 (340)
T ss_pred cceEEEEEEEE-CCEEEEEEecCCC--CCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcCCC
Confidence 34777777776 6799999998766 568999999999999999999999999999998755443322 11111
Q ss_pred -CC-CceEEEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCC--C-cchHHHHHHH
Q 023855 181 -SF-FEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQP--Y-VQNQELLKYI 234 (276)
Q Consensus 181 -~~-~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~--~-~~~~~~i~~~ 234 (276)
.. .....++|++.+...........+|..+++|++++++..+. + ..+..++..+
T Consensus 279 r~~~~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~~~~~~~~dh~~ii~~~ 337 (340)
T PRK05379 279 RSLRGRTITHAFLFEFPAGELPRVKGGDDADKARWVPLAELLAMRDRMFEDHFQIITHF 337 (340)
T ss_pred CCCCCcEEEEEEEEEecCCccCccCCCCceeeEEEEEHHHhhhhhhhhhhHHHHHHHHH
Confidence 11 23456777776543321112244688999999999998752 2 2344544443
No 64
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.74 E-value=2.4e-17 Score=137.62 Aligned_cols=120 Identities=13% Similarity=0.023 Sum_probs=94.1
Q ss_pred cceeEEEEEEEeC-CeeEEEEEeccCCCC----CCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc
Q 023855 106 SHRVGVGAFVMNG-KREVLVVQENSGRFR----GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQ 180 (276)
Q Consensus 106 ~~~v~v~~vv~~~-~~~vLLvkr~~~~~~----~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~ 180 (276)
.+..+|++++++. +++|||+++.+.+.. ++..|++|||++++||++++||+||++||||+.+..+..++......
T Consensus 42 ~~~~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~~~~~~ 121 (185)
T TIGR00052 42 DRGNAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLSFYSSP 121 (185)
T ss_pred EcCCeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEEEEcCC
Confidence 4455788888874 579999999887652 45789999999999999999999999999999998888887777666
Q ss_pred CCCceEEEEEEEEEecCC--cCcCCCccccceEEEEehhhhhcCCCc
Q 023855 181 SFFEKSDIFFLCMLRPLS--FDIQKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 181 ~~~~~~~~~f~~~~~~~~--~~~~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
+......++|++...... .....+++|..++.|++++++.++..+
T Consensus 122 g~~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~ 168 (185)
T TIGR00052 122 GGVTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKE 168 (185)
T ss_pred CCCcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHc
Confidence 667778889999764321 112234466678999999999887544
No 65
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.73 E-value=9.9e-17 Score=134.41 Aligned_cols=120 Identities=15% Similarity=0.063 Sum_probs=96.1
Q ss_pred CcceeEEEEEEEeC-CeeEEEEEeccCCCC-----CCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee
Q 023855 105 ASHRVGVGAFVMNG-KREVLVVQENSGRFR-----GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQS 178 (276)
Q Consensus 105 ~~~~v~v~~vv~~~-~~~vLLvkr~~~~~~-----~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~ 178 (276)
..+..+|++++++. +++|+|+++.+.+.+ ++-.|++|+|.+|+| ++++||+||+.||||+.+..+..++....
T Consensus 42 v~~~~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l~~~~~ 120 (191)
T PRK15009 42 YDRGNGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKLFELYM 120 (191)
T ss_pred EEECCEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEeeEEEc
Confidence 44455777888885 679999999998751 446899999999976 69999999999999999998998988888
Q ss_pred ccCCCceEEEEEEEEEecC--CcCcCCCccccceEEEEehhhhhcCCCc
Q 023855 179 HQSFFEKSDIFFLCMLRPL--SFDIQKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 179 ~~~~~~~~~~~f~~~~~~~--~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
.++..+...++|++..... ......+++|..++.|+|++++.++...
T Consensus 121 spG~s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~ 169 (191)
T PRK15009 121 SPGGVTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKT 169 (191)
T ss_pred CCcccCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHc
Confidence 8888888899999975321 1122345678889999999999987544
No 66
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=7.1e-17 Score=127.89 Aligned_cols=113 Identities=23% Similarity=0.254 Sum_probs=80.7
Q ss_pred EEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcc-eeeEEEEEE----eeccCCCc
Q 023855 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT-EFVEVLAFR----QSHQSFFE 184 (276)
Q Consensus 110 ~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~-~~~~~l~~~----~~~~~~~~ 184 (276)
++.+++++.+|+|||+++.......++.|.+|||++++||++.+||.||++||||+.+ .....+... ........
T Consensus 2 ~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~~~~~~ 81 (133)
T cd04685 2 AARVVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPVWRRDAAFTFLGVDGR 81 (133)
T ss_pred eEEEEEEcCCCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEEEEecCccce
Confidence 5789999999999999987643224589999999999999999999999999999998 544443222 22222233
Q ss_pred eEEEEEEEEEecCCcC-cC--CC-ccccceEEEEehhhhhcC
Q 023855 185 KSDIFFLCMLRPLSFD-IQ--KQ-ESEIEAAEWMPLEEYAAQ 222 (276)
Q Consensus 185 ~~~~~f~~~~~~~~~~-~~--~~-~~E~~~~~Wv~~~el~~~ 222 (276)
...++|++........ .. .. ..++..++|++++++.+.
T Consensus 82 ~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 82 QEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred eeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 5577888866432211 11 11 134668999999999886
No 67
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.71 E-value=1.9e-16 Score=132.60 Aligned_cols=116 Identities=23% Similarity=0.244 Sum_probs=86.3
Q ss_pred ceeEEEEEEEe--CCeeEEEEEeccCCCCCCCcEECCccccCCC-CCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCC
Q 023855 107 HRVGVGAFVMN--GKREVLVVQENSGRFRGTGIWKFPTGVVDEG-EDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFF 183 (276)
Q Consensus 107 ~~v~v~~vv~~--~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~g-Es~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~~ 183 (276)
++.+++++++. +++.||++||........|.|+||||++|+| |++.+||+||++||||+.+..+..++.........
T Consensus 29 ~~~aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~~~~ 108 (190)
T PRK10707 29 QRQAAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPVDSST 108 (190)
T ss_pred CCCeEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeeeeccC
Confidence 34455555553 4468999998765544568999999999985 68999999999999999999898888776543434
Q ss_pred ceEEEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCC
Q 023855 184 EKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQP 223 (276)
Q Consensus 184 ~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~ 223 (276)
+.....+++.+... ....++++|..++.|+|++++.++.
T Consensus 109 ~~~~~~~v~~~~~~-~~~~~d~~Ev~~v~~vpl~e~~~~~ 147 (190)
T PRK10707 109 GYQVTPVVGIIPPD-LPYRANEDEVAAVFEMPLAEALHLG 147 (190)
T ss_pred CcEEEEEEEEECCC-CCCCCChhhhheEEEEeHHHHhCcc
Confidence 45555565554332 2445677899999999999998864
No 68
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.71 E-value=1.1e-16 Score=130.48 Aligned_cols=114 Identities=19% Similarity=0.249 Sum_probs=82.6
Q ss_pred ceeEEEEEEEeCCeeEEEEEeccCCCCCCCcEECC-ccccCCCCCHHHHHHHHHHHHhCCcceeeE--EEEEEeeccC--
Q 023855 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGEDICVAAVREVKEETSIDTEFVE--VLAFRQSHQS-- 181 (276)
Q Consensus 107 ~~v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lP-gG~ve~gEs~~eaA~REl~EEtGl~~~~~~--~l~~~~~~~~-- 181 (276)
...+|+++|+|.+|+|||+||.......+|.|++| ||+++.|| .+||+||++||||+++.... .+........
T Consensus 26 ~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~~~~~~~~~~~~ 103 (158)
T TIGR02150 26 LHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTVLPRFSYRARDA 103 (158)
T ss_pred eEEEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceEEcceEEEEEecC
Confidence 34567788999889999999987655568999997 79999999 49999999999999986554 2322221111
Q ss_pred -CCceEEEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCCc
Q 023855 182 -FFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 182 -~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
.......+|.+... . .+.++++|+.+++|++++++.++...
T Consensus 104 ~g~~~~~~~f~~~~~--~-~~~~~~~Ev~~~~W~~~~el~~~~~~ 145 (158)
T TIGR02150 104 WGEHELCPVFFARAP--V-PLNPNPEEVAEYRWVSLEELKEILKA 145 (158)
T ss_pred CCcEEEEEEEEEecC--C-cccCChhHeeeEEEeCHHHHHHHHhc
Confidence 12234556666542 2 35556679999999999999876443
No 69
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.70 E-value=3.4e-16 Score=120.27 Aligned_cols=112 Identities=29% Similarity=0.463 Sum_probs=83.9
Q ss_pred EEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccC--CCceEE
Q 023855 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQS--FFEKSD 187 (276)
Q Consensus 110 ~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~--~~~~~~ 187 (276)
++++++++.++++||++|... .+|.|.+|||+++.||++.++|.||+.||+|+.+.............. ......
T Consensus 2 ~~~~i~~~~~~~ill~kr~~~---~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 78 (123)
T cd02883 2 AVGAVILDEDGRVLLVRRADS---PGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYEVESPDEGEHAVV 78 (123)
T ss_pred ceEEEEECCCCCEEEEEEcCC---CCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEEEEeeccCCCceEEE
Confidence 577888887789999999875 248999999999999999999999999999998865555544333222 344566
Q ss_pred EEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCCc
Q 023855 188 IFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 188 ~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
.+|.+........ ..+..|..+.+|++++++.++...
T Consensus 79 ~~~~~~~~~~~~~-~~~~~e~~~~~w~~~~~l~~~~~~ 115 (123)
T cd02883 79 FVFLARLVGGEPT-LLPPDEISEVRWVTLDELPALALS 115 (123)
T ss_pred EEEEEEeCCCCcC-CCCCCccceEEEEcHHHCcccccc
Confidence 6777755433221 245577889999999999986554
No 70
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.69 E-value=1.8e-16 Score=125.43 Aligned_cols=100 Identities=21% Similarity=0.294 Sum_probs=71.3
Q ss_pred CCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEE-----EEeecc-------CCCce
Q 023855 118 GKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA-----FRQSHQ-------SFFEK 185 (276)
Q Consensus 118 ~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~-----~~~~~~-------~~~~~ 185 (276)
+++++||+|+.... .|.|.||||++++||++.+||+||++||||+.+... .++ ...... ...+.
T Consensus 11 ~~~~~Llvk~~~~~---~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~ 86 (132)
T cd04661 11 DDTLVLLVQQKVGS---QNHWILPQGKREEGETLRQTAERTLKELCGNNLKAK-FYGNAPVGFYKYKYPKAVRNEGIVGA 86 (132)
T ss_pred cCcEEEEEEeecCC---CCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEE-EEEecCcEEEEEecCcccccccCccc
Confidence 35789999987532 489999999999999999999999999999987642 221 111110 11224
Q ss_pred EEEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCC
Q 023855 186 SDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPY 224 (276)
Q Consensus 186 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~ 224 (276)
..++|.|..... .... ..|+.+++|++++++.++..
T Consensus 87 ~~~~f~~~~~~g--~~~~-~~e~~~~~W~~~~el~~~l~ 122 (132)
T cd04661 87 KVFFFKARYMSG--QFEL-SQNQVDFKWLAKEELQKYLN 122 (132)
T ss_pred EEEEEEEEEecC--cccc-CCCcceeEecCHHHHHhhcC
Confidence 567777766433 2222 37889999999999998653
No 71
>PRK08999 hypothetical protein; Provisional
Probab=99.67 E-value=1.7e-15 Score=136.60 Aligned_cols=118 Identities=20% Similarity=0.331 Sum_probs=86.9
Q ss_pred EEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEE
Q 023855 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIF 189 (276)
Q Consensus 110 ~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 189 (276)
.+.+++++.+++|||+||.....+ +|.|+||||++++||++.+||.||++||||+.+.....+....+..++.....++
T Consensus 7 ~~~~vi~~~~~~vLL~kR~~~~~~-~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~~~~~~~~i~~ 85 (312)
T PRK08999 7 VAAGVIRDADGRILLARRPEGKHQ-GGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPLITVRHDYPDKRVRLDV 85 (312)
T ss_pred EEEEEEECCCCeEEEEEecCCCCC-CCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeEEEEEEEcCCCeEEEEE
Confidence 344555667789999999876554 5999999999999999999999999999999987666665555555444455566
Q ss_pred EEEEEecCCcCcCCCccccceEEEEehhhhhcCCCc-chHHHHH
Q 023855 190 FLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV-QNQELLK 232 (276)
Q Consensus 190 f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~-~~~~~i~ 232 (276)
|.+.... .. ++..|..+++|++++++.+++++ ...++++
T Consensus 86 y~~~~~~--~~--~~~~e~~~~~Wv~~~el~~~~~~~~~~~i~~ 125 (312)
T PRK08999 86 RRVTAWQ--GE--PHGREGQPLAWVAPDELAVYPFPPANQPIVR 125 (312)
T ss_pred EEEEEec--Cc--ccCccCCccEEecHHHcccCCCCcchHHHHH
Confidence 6654322 11 23456778899999999999887 3444443
No 72
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.67 E-value=1.1e-15 Score=127.21 Aligned_cols=114 Identities=17% Similarity=0.280 Sum_probs=82.3
Q ss_pred eEEE--EEEEeCC--eeEEEEEeccCCCCCCCcEE-CCccccCCCCCHHHHHHHHHHHHhCCcceeeE---EEEEE---e
Q 023855 109 VGVG--AFVMNGK--REVLVVQENSGRFRGTGIWK-FPTGVVDEGEDICVAAVREVKEETSIDTEFVE---VLAFR---Q 177 (276)
Q Consensus 109 v~v~--~vv~~~~--~~vLLvkr~~~~~~~~~~W~-lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~---~l~~~---~ 177 (276)
.+|. +++.|.+ ++||++||...+...||.|+ +|||++++||++.+||+||++||||+++.... .++.. .
T Consensus 33 ~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~ 112 (180)
T cd03676 33 YGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVVSYLR 112 (180)
T ss_pred EEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhceeccEEEEEE
Confidence 3355 4566765 89999999988877899995 89999999999999999999999999986533 23221 1
Q ss_pred e-cc-CCCceEEEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCC
Q 023855 178 S-HQ-SFFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQP 223 (276)
Q Consensus 178 ~-~~-~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~ 223 (276)
. .. .......++|.+.+.. ...+.++++|+.++.|++++|+.++.
T Consensus 113 ~~~~~~~~~e~~~~f~~~~~~-~~~~~~~~~Ev~~~~~~~~~el~~~l 159 (180)
T cd03676 113 EGEAGGLQPEVEYVYDLELPP-DFIPAPQDGEVESFRLLTIDEVLRAL 159 (180)
T ss_pred EcCCCcEeeeEEEEEEEEcCC-CCeeCCCCCcEeEEEEECHHHHHHHH
Confidence 1 11 1123445666665422 22345677899999999999998753
No 73
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.63 E-value=1.2e-14 Score=117.50 Aligned_cols=108 Identities=19% Similarity=0.151 Sum_probs=82.4
Q ss_pred cceeEEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCce
Q 023855 106 SHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEK 185 (276)
Q Consensus 106 ~~~v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~ 185 (276)
.++..|+++++. ++++||+++.. ..|++|||++++||++.+||.||++||||+.+..+..++.+.........
T Consensus 22 ~~~~~V~ii~~~-~~~~LL~~~~~------~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~~~~~~~~~ 94 (156)
T TIGR02705 22 PNPNHVLVIPRY-KDQWLLTEHKR------RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYEVEGESTDF 94 (156)
T ss_pred CCCCEEEEEEEE-CCEEEEEEEcC------CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEEecCCCcEE
Confidence 344567666666 45899988763 34999999999999999999999999999999999999887776665566
Q ss_pred EEEEEEEEEecCCcCcCCCccccceEE-EEehhhhhcCCCc
Q 023855 186 SDIFFLCMLRPLSFDIQKQESEIEAAE-WMPLEEYAAQPYV 225 (276)
Q Consensus 186 ~~~~f~~~~~~~~~~~~~~~~E~~~~~-Wv~~~el~~~~~~ 225 (276)
..++|+|...... .. .|..+.. +++++++.++...
T Consensus 95 ~~~vf~A~~~~~~----~~-~e~~E~~~~~~~~~~~~~~~~ 130 (156)
T TIGR02705 95 VKDVYFAEVSALE----SK-DDYLETKGPVLLQEIPDIIKA 130 (156)
T ss_pred EEEEEEEEEeccc----cC-CCceeeEeEEEHHHHHHHHhc
Confidence 7788888765321 11 4545555 7999999876544
No 74
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.63 E-value=5.6e-15 Score=114.45 Aligned_cols=101 Identities=23% Similarity=0.255 Sum_probs=77.8
Q ss_pred EEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEE
Q 023855 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIF 189 (276)
Q Consensus 110 ~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 189 (276)
+|.+++++ ++++||+++.. +.|++|||++++||++.+||.||++||||+.+.....++.+............+
T Consensus 2 ~v~vi~~~-~~~vLl~~~~~------~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~~~~~~~~~~ 74 (118)
T cd04665 2 SVLVICFY-DDGLLLVRHKD------RGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDLFESGFETLV 74 (118)
T ss_pred EEEEEEEE-CCEEEEEEeCC------CEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEEEEecCCCCcEEEEE
Confidence 45566666 57899998862 569999999999999999999999999999998888888766554434556677
Q ss_pred EEEEEecCCcCcCCCccccceEEEEehhhh
Q 023855 190 FLCMLRPLSFDIQKQESEIEAAEWMPLEEY 219 (276)
Q Consensus 190 f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el 219 (276)
|.+...... ......|+....|++....
T Consensus 75 y~a~~~~~~--~~~~~~E~~~~~~~~~~~~ 102 (118)
T cd04665 75 YPAVSAQLE--EKASYLETDGPVLFKNEPE 102 (118)
T ss_pred EEEEEEecc--cccccccccCcEEeccCCc
Confidence 777654332 2234588999999987654
No 75
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.63 E-value=7e-15 Score=113.74 Aligned_cols=56 Identities=29% Similarity=0.395 Sum_probs=44.2
Q ss_pred EEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCccee
Q 023855 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEF 169 (276)
Q Consensus 111 v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~ 169 (276)
+++++...+ .+||++|...+ +.+.|.||||++++||++.+||.||+.||||+++..
T Consensus 7 av~vl~~~~-~~lL~~r~~~~--~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~ 62 (118)
T cd04674 7 VVALLPVDD-GLLVIRRGIEP--GRGKLALPGGFIELGETWQDAVARELLEETGVAVDP 62 (118)
T ss_pred EEEEEEECC-CEEEEEeecCC--CCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccc
Confidence 334444434 56777776544 468999999999999999999999999999999863
No 76
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.62 E-value=1.6e-14 Score=112.40 Aligned_cols=105 Identities=24% Similarity=0.299 Sum_probs=66.7
Q ss_pred EEEEEEEe---CCeeEEEEEeccCC--CCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCc
Q 023855 110 GVGAFVMN---GKREVLVVQENSGR--FRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFE 184 (276)
Q Consensus 110 ~v~~vv~~---~~~~vLLvkr~~~~--~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~~~ 184 (276)
++|+++++ +..+|||++|.... ....+.|++|||+++.||++.+||+||++||||+++. ...+...... ...+
T Consensus 2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~-~~~~~l~~~~-~~~~ 79 (126)
T cd04662 2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD-GPFIDLGSLK-QSGG 79 (126)
T ss_pred eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce-eeEEeEEEEE-CCCC
Confidence 46777775 23479999874320 0135889999999999999999999999999999875 2222221111 1122
Q ss_pred eEEEEEEEEEecC--------------CcCcCCC-ccccceEEEEeh
Q 023855 185 KSDIFFLCMLRPL--------------SFDIQKQ-ESEIEAAEWMPL 216 (276)
Q Consensus 185 ~~~~~f~~~~~~~--------------~~~~~~~-~~E~~~~~Wv~~ 216 (276)
...++|++..... +...... .+|..+++|+++
T Consensus 80 ~~v~~fl~~~~~d~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~ 126 (126)
T cd04662 80 KVVHAWAVEADLDITDIKSNTFEMEWPKGSGKMRKFPEVDRAGWFDI 126 (126)
T ss_pred eEEEEEEEEecCChhHeEEEEEEEEccCCCCccccCCccceeEeecC
Confidence 3445555533221 1222233 478889999974
No 77
>PLN02709 nudix hydrolase
Probab=99.60 E-value=2e-14 Score=122.06 Aligned_cols=115 Identities=21% Similarity=0.238 Sum_probs=87.6
Q ss_pred eEEEEEEEeC------CeeEEEEEeccCCCCCCCcEECCccccCCC-CCHHHHHHHHHHHHhCCcceeeEEEEEEeeccC
Q 023855 109 VGVGAFVMNG------KREVLVVQENSGRFRGTGIWKFPTGVVDEG-EDICVAAVREVKEETSIDTEFVEVLAFRQSHQS 181 (276)
Q Consensus 109 v~v~~vv~~~------~~~vLLvkr~~~~~~~~~~W~lPgG~ve~g-Es~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~ 181 (276)
.+|.+.++.. +.+|||++|.......+|.|+||||++|++ +++.+||+||+.||+|+......+++.......
T Consensus 34 AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~~t 113 (222)
T PLN02709 34 SAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEPFVN 113 (222)
T ss_pred cEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCCeEC
Confidence 3455555542 248999999876544679999999999996 579999999999999999988888887765555
Q ss_pred CCceEEEEEEEEEec-CCcCcCCCccccceEEEEehhhhhcCC
Q 023855 182 FFEKSDIFFLCMLRP-LSFDIQKQESEIEAAEWMPLEEYAAQP 223 (276)
Q Consensus 182 ~~~~~~~~f~~~~~~-~~~~~~~~~~E~~~~~Wv~~~el~~~~ 223 (276)
..+....-|++.+.. ......++++|+.++.|+|++.+.+..
T Consensus 114 ~sg~~V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll~~~ 156 (222)
T PLN02709 114 KKGMSVAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFLKDK 156 (222)
T ss_pred CCCCEEEEEEEEecCCCCccccCChhhhheeEEecHHHHhCCc
Confidence 555667777776643 233445677999999999999987643
No 78
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.58 E-value=5.2e-14 Score=121.87 Aligned_cols=132 Identities=17% Similarity=0.187 Sum_probs=87.4
Q ss_pred eeEEEEEEEeCCeeEEEEEeccCCCCCCCcEECC-ccccCCCCC-----------------HHHHHHHHHHHHhCCccee
Q 023855 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGED-----------------ICVAAVREVKEETSIDTEF 169 (276)
Q Consensus 108 ~v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lP-gG~ve~gEs-----------------~~eaA~REl~EEtGl~~~~ 169 (276)
..++.++|+|.+|++||+||...+...||.|+.. +|++..||+ ..+||+||+.|||||.+..
T Consensus 56 Hra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~~~ 135 (247)
T PLN02552 56 HRAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPAED 135 (247)
T ss_pred EEEEEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCCccc
Confidence 4458899999999999999998887789999775 455544422 6789999999999999643
Q ss_pred -----eEEEEEEeeccCC---------C--ceEEEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCC---c-chHH
Q 023855 170 -----VEVLAFRQSHQSF---------F--EKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPY---V-QNQE 229 (276)
Q Consensus 170 -----~~~l~~~~~~~~~---------~--~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~---~-~~~~ 229 (276)
+..++.+...... . ....++|+. .......+.++++|+.+++|++++++.++.. + .-.+
T Consensus 136 ~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~-~~~~~~~l~lq~eEV~~~~wvs~~el~~~~~~~~~~~~tp 214 (247)
T PLN02552 136 VPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFI-RPVRDVKVNPNPDEVADVKYVNREELKEMMRKESGLKLSP 214 (247)
T ss_pred cccccceeeeEEEEecccccccccCCCccceEEEEEEEE-EecCCCcccCCHHHhheEEEEeHHHHHHHHhhcCCcccCH
Confidence 3334422222111 1 123333322 1223346778889999999999999998632 1 1245
Q ss_pred HHHHHHHHHHh
Q 023855 230 LLKYIVDICSA 240 (276)
Q Consensus 230 ~i~~~~~~~~~ 240 (276)
.++.+++.++.
T Consensus 215 w~~~~~~~~l~ 225 (247)
T PLN02552 215 WFRLIVDNFLM 225 (247)
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 79
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.58 E-value=6.1e-15 Score=127.80 Aligned_cols=150 Identities=22% Similarity=0.236 Sum_probs=105.4
Q ss_pred cCceeeeecCceEEEEeecCCCCCCCCCCCcceeEEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHH
Q 023855 76 EGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAA 155 (276)
Q Consensus 76 ~gf~~h~~~~~~~~l~~~~~~~~~~~p~~~~~~v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA 155 (276)
+|-.......++.+. |+.+ ....+++.-.+|-++|.+. +++||.++.++. +|.+.+-+|+||+|||+++|.
T Consensus 117 CG~~~~~~~~g~~~~---C~~c--g~~~fPR~dP~vIv~v~~~-~~ilLa~~~~h~---~g~yS~LAGFVE~GETlE~AV 187 (279)
T COG2816 117 CGTKTYPREGGWARV---CPKC--GHEHFPRIDPCVIVAVIRG-DEILLARHPRHF---PGMYSLLAGFVEPGETLEQAV 187 (279)
T ss_pred CCCcCccccCceeee---CCCC--CCccCCCCCCeEEEEEecC-CceeecCCCCCC---CcceeeeeecccCCccHHHHH
Confidence 344444444455554 3332 2333444455566666664 458888887765 599999999999999999999
Q ss_pred HHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEEEEEEecCCcCcCCCccccceEEEEehhh-hhcCCCc--chHHHHH
Q 023855 156 VREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEE-YAAQPYV--QNQELLK 232 (276)
Q Consensus 156 ~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~e-l~~~~~~--~~~~~i~ 232 (276)
.||++||+|++++.+.+.+...+.... -.++-|.+.+. ++++.++..|+.+++|++.+| ++.++-. ..++++.
T Consensus 188 ~REv~EE~Gi~V~~vrY~~SQPWPfP~--SLMigf~aey~--sgeI~~d~~Eleda~WFs~~evl~~L~~~~~~~~~li~ 263 (279)
T COG2816 188 AREVFEEVGIKVKNVRYVGSQPWPFPH--SLMLGFMAEYD--SGEITPDEGELEDARWFSRDEVLPALPPDGTIARRLIE 263 (279)
T ss_pred HHHHHHhhCeEEeeeeEEeccCCCCch--hhhhhheeeec--cccccCCcchhhhccccCHhHHhhhcCCCCCccccccc
Confidence 999999999999999999887766543 34566777654 445888999999999999999 6666643 2244444
Q ss_pred HHHHHH
Q 023855 233 YIVDIC 238 (276)
Q Consensus 233 ~~~~~~ 238 (276)
..+..+
T Consensus 264 ~~~~~i 269 (279)
T COG2816 264 PTLAAI 269 (279)
T ss_pred chHHHH
Confidence 444433
No 80
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.53 E-value=2e-13 Score=113.35 Aligned_cols=120 Identities=14% Similarity=0.196 Sum_probs=72.9
Q ss_pred EEEEEEeCC---eeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeE----------------
Q 023855 111 VGAFVMNGK---REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVE---------------- 171 (276)
Q Consensus 111 v~~vv~~~~---~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~---------------- 171 (276)
.++++.+.. -+||+++|.. .|.|.||||++++||++.+||.||+.||||+.+....
T Consensus 37 ~~~i~~~~~~~~l~vLl~~r~~-----~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l~~~~~~~~~l~~l~~~~~~~ 111 (186)
T cd03670 37 DGSIHPKSGKPILQFVAIKRPD-----SGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKD 111 (186)
T ss_pred CEEEEecCCCCeeEEEEEEeCC-----CCcCcCCeeeccCCCCHHHHHHHHHHHHHcccccccchhhhhhcchhhhhccc
Confidence 344455432 3788998863 4889999999999999999999999999976532110
Q ss_pred EEEEE---eeccCC--Cce-EEEEEEEEEecCC--cCcCC-CccccceEEEEehhhhhcCCCcchHHHHHHHHH
Q 023855 172 VLAFR---QSHQSF--FEK-SDIFFLCMLRPLS--FDIQK-QESEIEAAEWMPLEEYAAQPYVQNQELLKYIVD 236 (276)
Q Consensus 172 ~l~~~---~~~~~~--~~~-~~~~f~~~~~~~~--~~~~~-~~~E~~~~~Wv~~~el~~~~~~~~~~~i~~~~~ 236 (276)
.+..+ ...+.. ... ..+.|.+...... ....+ ..++..+++|+++++++.|.+++ ..+++++++
T Consensus 112 ~~~vy~~~~~dpr~td~~w~~Tva~~f~~~~~~~~~~~~~~a~dda~~a~W~~v~~l~~L~~dH-~~Il~~a~~ 184 (186)
T cd03670 112 GVEVYKGYVDDPRNTDNAWMETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDIDSKLPLYANH-SQFLKKVAE 184 (186)
T ss_pred ccEEEeccccCCCCCCcceEEEEEEEEEecCcccccccccCCCCchheeEEEEcccccccccCH-HHHHHHHHH
Confidence 11111 111111 111 2333333221110 01112 33578899999999999877765 566766654
No 81
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.53 E-value=1.5e-13 Score=107.29 Aligned_cols=106 Identities=19% Similarity=0.183 Sum_probs=62.4
Q ss_pred EEEEEEeCCe--eEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEE-EEEEeeccCCCceEE
Q 023855 111 VGAFVMNGKR--EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV-LAFRQSHQSFFEKSD 187 (276)
Q Consensus 111 v~~vv~~~~~--~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~-l~~~~~~~~~~~~~~ 187 (276)
|.+++.+.++ +||+.+... +.|++|||++++||++.+||.||++||||+.+..... ...........+...
T Consensus 3 ~~~~~~~~~~~~~ll~~r~~~------~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 76 (126)
T cd04663 3 CPAVLRRNGEVLELLVFEHPL------AGFQIVKGTVEPGETPEAAALRELQEESGLPSFLSDYILHVWERRFYQKRHFW 76 (126)
T ss_pred EEEEEEeCCceEEEEEEEcCC------CcEECCCccCCCCCCHHHHHHHHHHHHHCCeeeeeeecceeeeCCEeeccEEE
Confidence 4455555443 666665542 4599999999999999999999999999999732221 122211111122333
Q ss_pred EEEEEEEec---CCcCcCC--CccccceEEEEehhhhhcC
Q 023855 188 IFFLCMLRP---LSFDIQK--QESEIEAAEWMPLEEYAAQ 222 (276)
Q Consensus 188 ~~f~~~~~~---~~~~~~~--~~~E~~~~~Wv~~~el~~~ 222 (276)
+++++.... ......+ ++.+...+.|++++++...
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~E~~~i~~~Wv~l~~~~~~ 116 (126)
T cd04663 77 HLTLCEVDQDLPDSWVHFVQDDGGHEFRFFWVDLASCLDE 116 (126)
T ss_pred EEEEEEecCCCcccccCcccCCCCceEEEEEEcccccccc
Confidence 444443321 1111112 2333445569999999654
No 82
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=99.49 E-value=2.4e-13 Score=105.98 Aligned_cols=129 Identities=22% Similarity=0.286 Sum_probs=83.9
Q ss_pred CcceeEEEEEEEeCC-e--eEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccC
Q 023855 105 ASHRVGVGAFVMNGK-R--EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQS 181 (276)
Q Consensus 105 ~~~~v~v~~vv~~~~-~--~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~ 181 (276)
...+..++++++..+ . +|||++-.+++ ..|-+|+|++|++|+..+||+||+.||.|+.......++.......
T Consensus 6 ~G~r~vagCi~~r~~~~~ieVLlvsSs~~~----~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~~~~~~ 81 (145)
T KOG2839|consen 6 AGFRLVAGCICYRSDKEKIEVLLVSSSKKP----HRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLGGFEDFLS 81 (145)
T ss_pred CCcEEEEEeeeeeecCcceEEEEEecCCCC----CCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeeccccchhhccC
Confidence 344667888888733 3 89999988743 6799999999999999999999999999999988885544332222
Q ss_pred C--Cce-EEEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCCcchHHHHHHHHHHHHh
Q 023855 182 F--FEK-SDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYVQNQELLKYIVDICSA 240 (276)
Q Consensus 182 ~--~~~-~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~i~~~~~~~~~ 240 (276)
. .+. ....|.......-........|....+|+.++|..+..- +.-++..+..++.
T Consensus 82 ~~~~~~~k~~~~~l~v~e~le~wp~~~~~~r~r~W~~ledA~~~~~---~~~m~~al~e~~~ 140 (145)
T KOG2839|consen 82 KKHRTKPKGVMYVLAVTEELEDWPESEHEFREREWLKLEDAIELCQ---HKWMKAALEEFLQ 140 (145)
T ss_pred hhhcccccceeehhhhhhhcccChhhhcccceeEEeeHHHHHHHHh---hHHHHHHHHHHHH
Confidence 1 111 122222221111111112235588999999999987654 3344455554444
No 83
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.46 E-value=1.7e-14 Score=125.41 Aligned_cols=108 Identities=25% Similarity=0.324 Sum_probs=77.1
Q ss_pred eEEEEEEEeCCe-eEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEE
Q 023855 109 VGVGAFVMNGKR-EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSD 187 (276)
Q Consensus 109 v~v~~vv~~~~~-~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~ 187 (276)
..|..++++.++ +.||.|.++. .+|.|..++|++|+|||++|||+||++||||++++.+.+.....+.. +....
T Consensus 188 PvVIm~li~~d~~~~LL~R~~r~---~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~asQPWP~--~p~SL 262 (345)
T KOG3084|consen 188 PVVIMLLIDHDGKHALLGRQKRY---PPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYVASQPWPL--MPQSL 262 (345)
T ss_pred CeEEEEEEcCCCCEeeeecccCC---CCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeeeecCCCCC--CchHH
Confidence 345566777665 5666665554 46899999999999999999999999999999999888766655441 22222
Q ss_pred EEEEEEEecCCcCcCCCcc-ccceEEEEehhhhhc
Q 023855 188 IFFLCMLRPLSFDIQKQES-EIEAAEWMPLEEYAA 221 (276)
Q Consensus 188 ~~f~~~~~~~~~~~~~~~~-E~~~~~Wv~~~el~~ 221 (276)
+...+.+.....+++.+.+ |..+++|++-+|+.+
T Consensus 263 MIgc~ala~~~~~I~vd~dlEleDaqwF~r~ev~~ 297 (345)
T KOG3084|consen 263 MIGCLALAKLNGKISVDKDLELEDAQWFDREEVKS 297 (345)
T ss_pred HHHHHHHHhhCCccccCcchhhhhcccccHHHHHH
Confidence 2222212222366777776 999999999998754
No 84
>PLN02791 Nudix hydrolase homolog
Probab=99.43 E-value=1.2e-12 Score=128.61 Aligned_cols=116 Identities=22% Similarity=0.293 Sum_probs=86.2
Q ss_pred ceeEEEEEEEeC-CeeEEEEEeccCCCCCCCcEEC-CccccCCCCCHHHHHHHHHHHHhCCccee--eEEEEEEee----
Q 023855 107 HRVGVGAFVMNG-KREVLVVQENSGRFRGTGIWKF-PTGVVDEGEDICVAAVREVKEETSIDTEF--VEVLAFRQS---- 178 (276)
Q Consensus 107 ~~v~v~~vv~~~-~~~vLLvkr~~~~~~~~~~W~l-PgG~ve~gEs~~eaA~REl~EEtGl~~~~--~~~l~~~~~---- 178 (276)
.+.++.++|+|. +++|||+||...+...||.|++ |||+++.||+..+||+||+.||+||.+.. ...++.+..
T Consensus 31 ~HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~l~~~~~~~~~ 110 (770)
T PLN02791 31 YHRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELLFVFLQECVI 110 (770)
T ss_pred ceEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheeeeeeEEEEeec
Confidence 355688999995 6899999999888878999999 79999999999999999999999998643 333433211
Q ss_pred ccCC--CceEEEEEEEEEecC--CcCcCCCccccceEEEEehhhhhcC
Q 023855 179 HQSF--FEKSDIFFLCMLRPL--SFDIQKQESEIEAAEWMPLEEYAAQ 222 (276)
Q Consensus 179 ~~~~--~~~~~~~f~~~~~~~--~~~~~~~~~E~~~~~Wv~~~el~~~ 222 (276)
..+. .+...++|++..... ...+.++++|+.+++|++++|+.++
T Consensus 111 ~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~~ 158 (770)
T PLN02791 111 NDGKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKSA 158 (770)
T ss_pred cCCCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHHH
Confidence 1111 224455666643221 2246678899999999999999754
No 85
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.39 E-value=9.6e-12 Score=98.11 Aligned_cols=111 Identities=32% Similarity=0.521 Sum_probs=71.4
Q ss_pred EEEEEEeCC-eeEEEEEeccCCCCCCCcEECCccccCCCCCHHH-HHHHHHHHHhCCcce--eeEEEEEEeeccCCCc--
Q 023855 111 VGAFVMNGK-REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICV-AAVREVKEETSIDTE--FVEVLAFRQSHQSFFE-- 184 (276)
Q Consensus 111 v~~vv~~~~-~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~e-aA~REl~EEtGl~~~--~~~~l~~~~~~~~~~~-- 184 (276)
+.+++.... +++|+++++... +.|.||||++++||++.+ ||+||++||||+.+. ....++..........
T Consensus 14 ~~~~~~~~~~~~vl~~~~~~~~----~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
T COG0494 14 VAVLVGRDGPGEVLLAQRRDDG----GLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEFPPSPGDGSSV 89 (161)
T ss_pred EEEEEecCCCCEEeEEEccccC----CceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeecceeeeeccCcccCcccc
Confidence 434444433 789999988642 589999999999999988 999999999999997 4555554443333221
Q ss_pred --eE-EEEEEEEEec-CCcCcCCC---ccccceEEEEehhhhhcCCCc
Q 023855 185 --KS-DIFFLCMLRP-LSFDIQKQ---ESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 185 --~~-~~~f~~~~~~-~~~~~~~~---~~E~~~~~Wv~~~el~~~~~~ 225 (276)
.. ..++.+.... ........ ..|...+.|++++++......
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 137 (161)
T COG0494 90 GGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALVLA 137 (161)
T ss_pred cceEEEEEEeeeccccccccccccCCCcchhhceeeeeHHHccccccc
Confidence 11 1222221111 11111111 257889999999999887654
No 86
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=99.35 E-value=2.3e-11 Score=93.40 Aligned_cols=102 Identities=21% Similarity=0.308 Sum_probs=77.0
Q ss_pred EEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEEEE
Q 023855 113 AFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIFFLC 192 (276)
Q Consensus 113 ~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~ 192 (276)
++++.+++++||.||...+.++ |.|+||+|.++.+|+..++..||+.||.++ ....++...+..+++.....+|.|
T Consensus 7 ~~ii~~~~~~ll~kR~~~gl~~-glwefP~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~H~fth~~~~~~~~~~ 82 (118)
T cd03431 7 VVVIRNDGRVLLEKRPEKGLLA-GLWEFPSVEWEEEADGEEALLSALKKALRL---SLEPLGTVKHTFTHFRLTLHVYLA 82 (118)
T ss_pred EEEEecCCeEEEEECCCCCCCC-cceeCCCccccCCcCHHHHHHHHHHHHhCc---ccccceeEEEecCCeEEEEEEEEE
Confidence 3444557899999998887765 999999999999999999999999988765 223345556666666677777877
Q ss_pred EEecCCcCcCCCccccceEEEEehhhhhcCCCc
Q 023855 193 MLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 193 ~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
...... .+..+++|++++++.+++++
T Consensus 83 ~~~~~~-------~~~~~~~W~~~eel~~~~~p 108 (118)
T cd03431 83 RLEGDL-------LAPDEGRWVPLEELDEYALP 108 (118)
T ss_pred EEeCCC-------cCccccEEccHHHHhhCCCC
Confidence 553221 23456799999999999886
No 87
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=99.31 E-value=4.3e-11 Score=97.69 Aligned_cols=112 Identities=21% Similarity=0.221 Sum_probs=77.2
Q ss_pred EEEEEEE-eCC--eeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceE
Q 023855 110 GVGAFVM-NGK--REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKS 186 (276)
Q Consensus 110 ~v~~vv~-~~~--~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~ 186 (276)
+|+++++ ..+ -.++|+++.+.|. |+-..++|+|.+|.||++..||+|||+||||+.......-......++..+..
T Consensus 75 gVaIl~il~~dG~~~ivL~kQfRpP~-Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~~~s~~~f~DPGltn~~ 153 (225)
T KOG3041|consen 75 GVAILAILESDGKPYIVLVKQFRPPT-GKICIELPAGLIDDGEDFEGAAIRELEEETGYKGKVDMVSPTVFLDPGLTNCN 153 (225)
T ss_pred eEEEEEEEecCCcEEEEEEEeecCCC-CcEEEEcccccccCCCchHHHHHHHHHHHhCccceeeeccccEEcCCCCCCCc
Confidence 4444433 233 4789999998886 55788999999999999999999999999999965544333333344444444
Q ss_pred EEEEEEEEecCC-----cCcCCCccccceEEEEehhhhhcC
Q 023855 187 DIFFLCMLRPLS-----FDIQKQESEIEAAEWMPLEEYAAQ 222 (276)
Q Consensus 187 ~~~f~~~~~~~~-----~~~~~~~~E~~~~~Wv~~~el~~~ 222 (276)
....++.++... ....+++.|..++.-++..+|.+.
T Consensus 154 ~~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~ 194 (225)
T KOG3041|consen 154 LCIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWRE 194 (225)
T ss_pred eEEEEEEecCCCccccCccccCCCCceEEEEEeeHHHHHHH
Confidence 444444443321 223456689999999999888764
No 88
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=99.13 E-value=2.2e-10 Score=96.25 Aligned_cols=114 Identities=23% Similarity=0.235 Sum_probs=81.4
Q ss_pred eEEEEEEEeC---CeeEEEEEeccCCCCCCCcEECCccccCCC-CCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCc
Q 023855 109 VGVGAFVMNG---KREVLVVQENSGRFRGTGIWKFPTGVVDEG-EDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFE 184 (276)
Q Consensus 109 v~v~~vv~~~---~~~vLLvkr~~~~~~~~~~W~lPgG~ve~g-Es~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~~~ 184 (276)
.+|.+.+++. +-+|||.||.+.-...+|.-+||||..|++ ++-..+|.||.+||.|++.+...+++.........+
T Consensus 44 ~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r~~ 123 (246)
T KOG3069|consen 44 AAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLRSG 123 (246)
T ss_pred ccEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhccceeeccC
Confidence 3455555553 247999999887777789999999999984 567789999999999999987777765544333333
Q ss_pred eEEEEEEEEEecCC--cCcCCCccccceEEEEehhhhhcC
Q 023855 185 KSDIFFLCMLRPLS--FDIQKQESEIEAAEWMPLEEYAAQ 222 (276)
Q Consensus 185 ~~~~~f~~~~~~~~--~~~~~~~~E~~~~~Wv~~~el~~~ 222 (276)
....-+++.+.... ....+...|+.++.|+|++++..-
T Consensus 124 ~~v~p~v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll~~ 163 (246)
T KOG3069|consen 124 WSVFPVVGFLSDKKILPSLRLNSGEVESAFWVPLTDLLLP 163 (246)
T ss_pred cccceeEEEEecccccccccCCchheeeeeeeeHHHHhhh
Confidence 33333344332221 445677899999999999999763
No 89
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=99.10 E-value=3.2e-10 Score=91.14 Aligned_cols=130 Identities=16% Similarity=0.200 Sum_probs=94.5
Q ss_pred eeEEEEEEEeCCeeEEEEEeccCCCCCCCcEECC-ccccCCCCCHHHHHHHHHHHHhCCcceeeE---EEE-EEeec--c
Q 023855 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGEDICVAAVREVKEETSIDTEFVE---VLA-FRQSH--Q 180 (276)
Q Consensus 108 ~v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lP-gG~ve~gEs~~eaA~REl~EEtGl~~~~~~---~l~-~~~~~--~ 180 (276)
..+..++++|.+|++||.||...+...++.|.-- .||--+||+..+||+|.+.+|+||...... ++. +.+.. .
T Consensus 33 HrAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~~~ 112 (185)
T COG1443 33 HRAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILPRFRYRAADP 112 (185)
T ss_pred HhhhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccccccceEEeccCC
Confidence 4567899999999999999998888789999874 688889999999999999999999986332 222 22222 2
Q ss_pred CCCceEEEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCCc---chHHHHHHHHHHH
Q 023855 181 SFFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV---QNQELLKYIVDIC 238 (276)
Q Consensus 181 ~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~---~~~~~i~~~~~~~ 238 (276)
.......++++......+ .+.+.++|+.+++|++++++.++... .-.+.+..+.+..
T Consensus 113 ~~~~E~Eic~V~~~~~~~-~~~~npdEV~~~~wv~~e~l~~~~~~~~~~fsPW~~~~~~~~ 172 (185)
T COG1443 113 DGIVENEICPVLAARLDS-ALDPNPDEVMDYRWVSPEDLKEMVDATPWAFSPWFVIQAEND 172 (185)
T ss_pred CCcceeeeeeEEEEeecC-CCCCChHHhhheeccCHHHHHHhhcCCceeeChHHHHHhcch
Confidence 223444555555444333 56677799999999999999987654 1235555555444
No 90
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=99.10 E-value=5.8e-10 Score=85.71 Aligned_cols=105 Identities=21% Similarity=0.255 Sum_probs=70.6
Q ss_pred EEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEEEE
Q 023855 113 AFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIFFLC 192 (276)
Q Consensus 113 ~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~ 192 (276)
+++++.+|++||.||...++++ |.|+||.-..+. ++..+.+.+.+.+..|+.+.....++.+.+..++......+|.+
T Consensus 2 ~~i~~~~~~~Ll~kRp~~gll~-GLwefP~~e~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~v~H~fSH~~~~~~~~~~ 79 (114)
T PF14815_consen 2 LLIIRSQGRVLLEKRPEKGLLA-GLWEFPLIESDE-EDDEEELEEWLEEQLGLSIRSVEPLGTVKHVFSHRRWTIHVYEV 79 (114)
T ss_dssp EEEEETTSEEEEEE--SSSTTT-T-EE--EEE-SS-S-CHHHHHHHTCCSSS-EEEE-S-SEEEEEE-SSEEEEEEEEEE
T ss_pred EEEEEeCCEEEEEECCCCChhh-cCcccCEeCccC-CCCHHHHHHHHHHHcCCChhhheecCcEEEEccceEEEEEEEEE
Confidence 5678889999999999988886 999999977773 33355566667788999887777888888888888888888988
Q ss_pred EEecCCcCcCCCccccceEEEEehhhhhcCCCc
Q 023855 193 MLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 193 ~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
.+...... +..+.+|++.+++.+++++
T Consensus 80 ~~~~~~~~------~~~~~~W~~~~~l~~~~~p 106 (114)
T PF14815_consen 80 EVSADPPA------EPEEGQWVSLEELDQYPLP 106 (114)
T ss_dssp EEE-SS----------TTEEEEEGGGGGGS---
T ss_pred EecCCCCC------CCCCcEEEEHHHHhhCCCC
Confidence 77644321 4567899999999999986
No 91
>PLN02839 nudix hydrolase
Probab=99.00 E-value=3.9e-08 Score=88.85 Aligned_cols=171 Identities=17% Similarity=0.222 Sum_probs=109.2
Q ss_pred CChHHHHHHHHHHHHHHHHcCccEEEEEcccccccchHHHHhcCceeeee--cCceEEEEeecCCCCCCCCCCCcceeEE
Q 023855 34 MDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHA--EPNYLMLVYWIPGGANTLPANASHRVGV 111 (276)
Q Consensus 34 ~~~~~f~~~l~~~l~~w~~~~~~~iw~~~~~~~~~l~~~~~~~gf~~h~~--~~~~~~l~~~~~~~~~~~p~~~~~~v~v 111 (276)
.++++-.+.|..-+..|+.++. ++....++-+ .... .+-+..+ ......+.+..+..+.+
T Consensus 147 ~t~~~Rt~al~~v~~~lr~~g~------~~gWRnE~y~--------V~~~~~~~~l~~i----ERaA~~lfGi~tyGVHl 208 (372)
T PLN02839 147 QKPEDRTRAVADVIKILGDKGI------IPGIRNELYP--------VKPSFNAPVFFSL----ERAAAPYFGIKGYGVHM 208 (372)
T ss_pred CCHHHHHHHHHHHHHHHHHcCC------CCCcccCccc--------cccCCCCcceEEE----eeccccccCceeEEEEE
Confidence 3577888889988899999875 1111222211 1111 1223332 22333455555555666
Q ss_pred EEEEEe-CCeeEEEEEeccCCCCCCCcEEC-CccccCCCCCHHHHHHHHHHHHhCCcce---eeEEEEEEeecc--CCCc
Q 023855 112 GAFVMN-GKREVLVVQENSGRFRGTGIWKF-PTGVVDEGEDICVAAVREVKEETSIDTE---FVEVLAFRQSHQ--SFFE 184 (276)
Q Consensus 112 ~~vv~~-~~~~vLLvkr~~~~~~~~~~W~l-PgG~ve~gEs~~eaA~REl~EEtGl~~~---~~~~l~~~~~~~--~~~~ 184 (276)
.+++.. .++++++.||...+...||+|+- .+|++..||++.++++||+.||.||... .....+.+.+.. ...-
T Consensus 209 NGyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g~ 288 (372)
T PLN02839 209 NGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYCF 288 (372)
T ss_pred EEEEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCcc
Confidence 666654 34679999998888888999976 6899999999999999999999999754 233334333221 1111
Q ss_pred eEEEEEEEEEe-cCCcCcCCCccccceEEEEehhhhhcC
Q 023855 185 KSDIFFLCMLR-PLSFDIQKQESEIEAAEWMPLEEYAAQ 222 (276)
Q Consensus 185 ~~~~~f~~~~~-~~~~~~~~~~~E~~~~~Wv~~~el~~~ 222 (276)
.....|+..+. +....+.+++.|+.++.+++++|+.+.
T Consensus 289 ~~evly~YDLeLP~df~P~~qDGEVe~F~Lm~v~EV~~~ 327 (372)
T PLN02839 289 KRDVLFCYDLELPQDFVPKNQDGEVESFKLIPVAQVANV 327 (372)
T ss_pred ccCEEEEeeeecCCccccCCCccceeEEEEecHHHHHHH
Confidence 23344444333 223445678899999999999999753
No 92
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=98.79 E-value=7.6e-08 Score=73.36 Aligned_cols=127 Identities=26% Similarity=0.344 Sum_probs=80.6
Q ss_pred eEEEEEEEe-CCe--eEEEEEeccCCCCC---CCcEECCccccCCCCCHHHHHHHHHHHHhCCcceee-EEEEEEeeccC
Q 023855 109 VGVGAFVMN-GKR--EVLVVQENSGRFRG---TGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFV-EVLAFRQSHQS 181 (276)
Q Consensus 109 v~v~~vv~~-~~~--~vLLvkr~~~~~~~---~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~-~~l~~~~~~~~ 181 (276)
.+++++++. ..| .|||++- .+|+|. .|.|.+|.|....||++..||.||..||+||.+.-. ..++....
T Consensus 4 ~SAGvLlYR~~aG~v~VLLvHP-GGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~~lG~~kQ--- 79 (161)
T COG4119 4 LSAGVLLYRARAGVVDVLLVHP-GGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRIDLGSLKQ--- 79 (161)
T ss_pred ccceeEEEEecCCCEEEEEecC-CCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeecCchhhhhhhcc---
Confidence 467888887 333 5666653 344432 489999999999999999999999999999987311 11222111
Q ss_pred CCceEEEEEEE----------------EEecCCcCcCCCccccceEEEEehhhhhcCCCcchHHHHHHHHHHHHh
Q 023855 182 FFEKSDIFFLC----------------MLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYVQNQELLKYIVDICSA 240 (276)
Q Consensus 182 ~~~~~~~~f~~----------------~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~i~~~~~~~~~ 240 (276)
..++....|-+ ...+.++... .-.|+..+.|+++.+...-....+++++..+.....+
T Consensus 80 ~GGKvVta~~veae~Dva~~rSntFe~eWPprSG~M~-~FPEVDRagWF~l~eAr~Kil~gQRpfldrL~a~~~a 153 (161)
T COG4119 80 SGGKVVTAFGVEAELDVADARSNTFELEWPPRSGKMR-KFPEVDRAGWFPLAEARTKILKGQRPFLDRLMAHAVA 153 (161)
T ss_pred CCCcEEEEEeeeeeeehhhhhcceeeeecCCCCCccc-cCcccccccceecHHHHhHHhhccchHHHHHHHHhcc
Confidence 12233333332 2222222211 1267889999999999876666667877777665443
No 93
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.36 E-value=1.2e-06 Score=72.18 Aligned_cols=131 Identities=21% Similarity=0.301 Sum_probs=93.2
Q ss_pred eeEEEEEEEeCCeeEEEEEeccCCCCCCCcEEC-----Cc---cccCC--CCCHHHHHHHHHHHHhCCcceeeE-----E
Q 023855 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKF-----PT---GVVDE--GEDICVAAVREVKEETSIDTEFVE-----V 172 (276)
Q Consensus 108 ~v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~l-----Pg---G~ve~--gEs~~eaA~REl~EEtGl~~~~~~-----~ 172 (276)
..+..++++|.++++||+||....+..++.|.- |= |..+. +.....||+|-|.-|+||..+.+. +
T Consensus 52 HRaFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~~~ 131 (225)
T KOG0142|consen 52 HRAFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEEFNF 131 (225)
T ss_pred hheeeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHHHccc
Confidence 345889999999999999999888888888863 21 11111 335789999999999999875443 4
Q ss_pred EEEEee---ccCCCceEEEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCCc---chHHHHHHHHHHHH
Q 023855 173 LAFRQS---HQSFFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV---QNQELLKYIVDICS 239 (276)
Q Consensus 173 l~~~~~---~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~---~~~~~i~~~~~~~~ 239 (276)
++.+++ ..+.++...+-|+..+.. ...++++++|+.+++|++.+|+.++.-. .-.+.++.+.+.++
T Consensus 132 ltrihYkA~sdg~wGEhEiDYiL~~~~-~~~~nPnpnEv~e~ryvs~eelkel~~~~~~~~TPWfkli~~~~l 203 (225)
T KOG0142|consen 132 LTRIHYKAPSDGIWGEHEIDYILFLVK-DVTLNPNPNEVSEIRYVSREELKELVAKASAGFTPWFKLISENFL 203 (225)
T ss_pred ceeeeeecCCCCCcccceeeEEEEEec-cCCCCCChhhhhHhheecHHHHHHHHhccccCCChHHHHHHHHHH
Confidence 444433 334477777777776554 5567888899999999999999886433 22366666666544
No 94
>PRK10880 adenine DNA glycosylase; Provisional
Probab=97.95 E-value=6.9e-05 Score=68.48 Aligned_cols=105 Identities=13% Similarity=0.128 Sum_probs=63.5
Q ss_pred eeEEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEE
Q 023855 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSD 187 (276)
Q Consensus 108 ~v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~ 187 (276)
.....++++..++++||.||...++++ |.|+||.. +. +...++..|+.|+.......++.+.+..+++....
T Consensus 230 ~~~~~~~~~~~~~~~~l~~r~~~gl~~-gl~~fP~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~H~fTH~~~~~ 301 (350)
T PRK10880 230 ERTGYFLLLQHGDEVWLEQRPPSGLWG-GLFCFPQF--AD-----EEELRQWLAQRGIAADNLTQLTAFRHTFSHFHLDI 301 (350)
T ss_pred eEEEEEEEEEECCEEEEEECCccChhh-ccccCCCC--cc-----hhhHHHHHHhcCCchhhhcccCceEEEEeeEEEEE
Confidence 344445555567899999999888875 99999963 21 11245666888876422222444555555555555
Q ss_pred EEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCCc
Q 023855 188 IFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 188 ~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
..|.+........ .. .....|++++++.+++++
T Consensus 302 ~~~~~~~~~~~~~--~~---~~~~~w~~~~~~~~~~~p 334 (350)
T PRK10880 302 VPMWLPVSSFTGC--MD---EGNGLWYNLAQPPSVGLA 334 (350)
T ss_pred EEEEEEccccccc--cC---CcCCeEechHHhcccCCc
Confidence 5565543211100 00 123369999999999986
No 95
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=97.85 E-value=0.00014 Score=60.88 Aligned_cols=38 Identities=37% Similarity=0.691 Sum_probs=34.3
Q ss_pred eEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHh
Q 023855 121 EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEET 163 (276)
Q Consensus 121 ~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEt 163 (276)
+++.+||.. .+.|.+|||.+|+||-+-.+..||+.||.
T Consensus 140 e~vavkr~d-----~~~WAiPGGmvdpGE~vs~tLkRef~eEa 177 (275)
T KOG4195|consen 140 EFVAVKRPD-----NGEWAIPGGMVDPGEKVSATLKREFGEEA 177 (275)
T ss_pred EEEEEecCC-----CCcccCCCCcCCchhhhhHHHHHHHHHHH
Confidence 577888874 58999999999999999999999999996
No 96
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=97.57 E-value=0.0009 Score=53.54 Aligned_cols=107 Identities=21% Similarity=0.314 Sum_probs=69.6
Q ss_pred EEEEEeCCeeEEEEEeccCCCC--CCCcEEC-CccccCCCCC--H-----HHHHHHHHHHHhCCc---ceeeEEEEEEee
Q 023855 112 GAFVMNGKREVLVVQENSGRFR--GTGIWKF-PTGVVDEGED--I-----CVAAVREVKEETSID---TEFVEVLAFRQS 178 (276)
Q Consensus 112 ~~vv~~~~~~vLLvkr~~~~~~--~~~~W~l-PgG~ve~gEs--~-----~eaA~REl~EEtGl~---~~~~~~l~~~~~ 178 (276)
.+++.+ +++||+..|-.+... -.+.+++ -|||+..++. + .-.+.||+.||.++. ...+..+++...
T Consensus 65 Yvvi~~-edevliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINd 143 (203)
T COG4112 65 YVVIMD-EDEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLIND 143 (203)
T ss_pred EEEEec-CCEEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecC
Confidence 345666 459999998754311 1256777 5899987542 2 223789999999998 556677777765
Q ss_pred ccCCCceE--EEEEEEEEecCCcCcCCCccccceEEEEehhhhhc
Q 023855 179 HQSFFEKS--DIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAA 221 (276)
Q Consensus 179 ~~~~~~~~--~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~ 221 (276)
....-++. ..+|..+.... .....+.+..+++|+.++++.+
T Consensus 144 d~neVgkVHiG~lf~~~~k~n--dvevKEkd~~~~kwik~~ele~ 186 (203)
T COG4112 144 DTNEVGKVHIGALFLGRGKFN--DVEVKEKDLFEWKWIKLEELEK 186 (203)
T ss_pred CCcccceEEEEEEEEeecccc--ceeeeecceeeeeeeeHHHHHH
Confidence 54443333 34455544432 2334456778899999999987
No 97
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=97.37 E-value=3.4e-05 Score=68.34 Aligned_cols=104 Identities=22% Similarity=0.308 Sum_probs=66.5
Q ss_pred EEEEEEEeCC-eeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEE-EEEEeeccCCCceEE
Q 023855 110 GVGAFVMNGK-REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV-LAFRQSHQSFFEKSD 187 (276)
Q Consensus 110 ~v~~vv~~~~-~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~-l~~~~~~~~~~~~~~ 187 (276)
..+++++|.. .++||++.... ..|.||-|++..+|+-.+||+|||.||||.+....-. -..... ...+...
T Consensus 84 v~ga~ild~~~sr~llv~g~qa-----~sw~fprgK~~kdesd~~caiReV~eetgfD~skql~~~e~Ie~--nI~dq~~ 156 (348)
T KOG2937|consen 84 VRGAIILDEKRSRCLLVKGWQA-----SSWSFPRGKISKDESDSDCAIREVTEETGFDYSKQLQDNEGIET--NIRDQLV 156 (348)
T ss_pred CchHhhhhhhhhhhheeeceec-----ccccccCccccccchhhhcchhcccchhhcCHHHHhccccCccc--chhhcee
Confidence 5677888843 58888887753 4599999999999999999999999999998742211 001111 1122333
Q ss_pred EEEEEEEecCCcCcC-CCccccceEEEEehhhhh
Q 023855 188 IFFLCMLRPLSFDIQ-KQESEIEAAEWMPLEEYA 220 (276)
Q Consensus 188 ~~f~~~~~~~~~~~~-~~~~E~~~~~Wv~~~el~ 220 (276)
..|+.-......... .--.|+..+.|..++++.
T Consensus 157 ~~fIi~gvs~d~~f~~~v~~eis~ihW~~l~~l~ 190 (348)
T KOG2937|consen 157 RLFIINGVSEDTNFNPRVRKEISKIHWHYLDHLV 190 (348)
T ss_pred eeeeeccceeeeecchhhhccccceeeeehhhhc
Confidence 334431111111111 123688889999999983
No 98
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=96.86 E-value=0.0018 Score=56.82 Aligned_cols=87 Identities=11% Similarity=0.113 Sum_probs=60.1
Q ss_pred eEEEEEEEeCC-eeEEEEEeccCCC------------------------CCCCcEECCccccCCCCCHHHHHHHHHHHHh
Q 023855 109 VGVGAFVMNGK-REVLVVQENSGRF------------------------RGTGIWKFPTGVVDEGEDICVAAVREVKEET 163 (276)
Q Consensus 109 v~v~~vv~~~~-~~vLLvkr~~~~~------------------------~~~~~W~lPgG~ve~gEs~~eaA~REl~EEt 163 (276)
-+|.+++++.+ .++|++++.++.. .-+-..++.||.++..-++.+-|..|+.||+
T Consensus 27 ~~v~ill~~r~~eq~l~vrqfr~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke~s~~eia~eev~eec 106 (405)
T KOG4432|consen 27 SSVSILLFHRDLEQFLLVRQFRPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKELSPREIASEEVAEEC 106 (405)
T ss_pred cceEEEEEccchhhhehhhhhchhheecccCCCCCCcccccccHhhCCCccceeeeeeccccccccCHHHHhHHHHHHHh
Confidence 36777777744 4677776644321 0113467889999999999999999999999
Q ss_pred CCcceeeEEEEEEeeccCC--CceEEEEEEEEEe
Q 023855 164 SIDTEFVEVLAFRQSHQSF--FEKSDIFFLCMLR 195 (276)
Q Consensus 164 Gl~~~~~~~l~~~~~~~~~--~~~~~~~f~~~~~ 195 (276)
|+++...+++..+....+. .+...++|+|.+.
T Consensus 107 gy~v~~d~l~hv~~~~~g~~~s~sa~~l~y~ei~ 140 (405)
T KOG4432|consen 107 GYRVDPDDLIHVITFVVGAHQSGSAQHLYYAEID 140 (405)
T ss_pred CCcCChhHceEEEEEEeccccCccchheeeeecc
Confidence 9999877766554433322 3445678888664
No 99
>PRK13910 DNA glycosylase MutY; Provisional
Probab=96.71 E-value=0.011 Score=52.71 Aligned_cols=83 Identities=13% Similarity=0.245 Sum_probs=49.6
Q ss_pred EEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEE
Q 023855 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIFF 190 (276)
Q Consensus 111 v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f 190 (276)
..+++++ ++++||.||. ..+++ |.|+||+. +. +.+.... .++...+..+++.....+|
T Consensus 189 ~~~~~~~-~~~~ll~kr~-~~l~~-gl~~fP~~--~~--------------~~~~~~~---~~~~~~H~fTH~~~~~~~~ 246 (289)
T PRK13910 189 YLGVVIQ-NNQIALEKIE-QKLYL-GMHHFPNL--KE--------------NLEYKLP---FLGAIKHSHTKFKLNLNLY 246 (289)
T ss_pred EEEEEEE-CCEEEEEECC-Cchhc-ccccCCCC--hh--------------hhccccc---ccCceEEEEEeEEEEEEEE
Confidence 3344444 6789999885 55664 99999963 11 0111111 1344455555555666666
Q ss_pred EEEEecCCcCcCCCccccceEEEEehhhhhcCCCc
Q 023855 191 LCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 191 ~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
.+..... ....+|++++++.+++++
T Consensus 247 ~~~~~~~----------~~~~~w~~~~~~~~~~~p 271 (289)
T PRK13910 247 LAAIKDL----------KNPIRFYSLKDLETLPIS 271 (289)
T ss_pred EEEeccC----------CccceEecHHHhhhcCCc
Confidence 6543210 123489999999999986
No 100
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=96.57 E-value=0.011 Score=52.04 Aligned_cols=121 Identities=20% Similarity=0.111 Sum_probs=76.5
Q ss_pred CcceeEEEEEEEe-CCeeEEEEEeccCCC-CC-------------------------CCcEECCccccCCCCCHHHHHHH
Q 023855 105 ASHRVGVGAFVMN-GKREVLVVQENSGRF-RG-------------------------TGIWKFPTGVVDEGEDICVAAVR 157 (276)
Q Consensus 105 ~~~~v~v~~vv~~-~~~~vLLvkr~~~~~-~~-------------------------~~~W~lPgG~ve~gEs~~eaA~R 157 (276)
+..+-+|.++++| ...++.|+|+-+.+. .| .-..++..|.|+..-+..+-|.|
T Consensus 226 ~k~hdSvt~iL~n~srk~LVlvqqfRpaVy~G~~~~~~~g~~~~vDe~~~~e~~PaigvTlELcag~Vd~p~s~~e~a~~ 305 (405)
T KOG4432|consen 226 AKCHDSVTCILVNMSRKELVLVQQFRPAVYVGKNRFLKEGIGKPVDEIDFSESDPAIGVTLELCAGRVDDPFSDPEKAAR 305 (405)
T ss_pred hhCCCceEEEEEeccchheehhhhcCcceeecceeecccCCCCcccccccccCCccceeeeeeecccCCCCcccHHHHHH
Confidence 3445678888888 445666655543322 11 12456677888877889999999
Q ss_pred HHHHHhCCcceeeE--EEEEEeeccCCCceEEEEEEEEEecCC----cCcCCCccccceEEEEehhhhhcCCCc
Q 023855 158 EVKEETSIDTEFVE--VLAFRQSHQSFFEKSDIFFLCMLRPLS----FDIQKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 158 El~EEtGl~~~~~~--~l~~~~~~~~~~~~~~~~f~~~~~~~~----~~~~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
|..||+|+++...+ ........-+..+-....|.|.+.... +--..+++|..++.-+++++++.+...
T Consensus 306 e~veecGYdlp~~~~k~va~y~sGVG~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IEvv~lsle~a~~~~~q 379 (405)
T KOG4432|consen 306 ESVEECGYDLPEDSFKLVAKYISGVGQSGDTQTMFYVEVTDARRSGPGGGEKEEDEDIEVVRLSLEDAPSLYRQ 379 (405)
T ss_pred HHHHHhCCCCCHHHHhhhheeecccCCcCCeeEEEEEEeehhhccCCCCCcccccceeeEEEechhhhhHHHhc
Confidence 99999999985443 334433444445555566667554321 122234567888888999999876543
No 101
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=95.99 E-value=0.02 Score=51.74 Aligned_cols=105 Identities=16% Similarity=0.206 Sum_probs=64.2
Q ss_pred CCCCCCCcceeEEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee
Q 023855 99 NTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQS 178 (276)
Q Consensus 99 ~~~p~~~~~~v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~l~~~~~ 178 (276)
.+.+....++..++.++.+.+|+++|.+|...+.++ |.|+||....+. .. .+..-+.|+.. +.++.+.+
T Consensus 226 ~k~~k~~~~~~~~~~~~~~~~~~~~l~kr~~~gl~~-gl~~fP~~e~~~--~~-----~~~~~~~~~~~---~~~~~~~H 294 (342)
T COG1194 226 VKKPKKKLPRRFAAFLILNRDGEVLLEKRPEKGLLG-GLWCFPQFEDEA--DL-----LDWLAADGLAA---EPLGAFRH 294 (342)
T ss_pred CcCcccccchheeeEEEEccCcchhhhhCcccCcee-cccccccccccc--hh-----hhHhhhccccc---ccccceee
Confidence 334444445666777777888999999999988876 999999765543 22 22233344444 33444444
Q ss_pred ccCCCceEEEEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCCc
Q 023855 179 HQSFFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 225 (276)
Q Consensus 179 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 225 (276)
..+++..... +.+.... ... +..|++++++...+++
T Consensus 295 ~fth~~l~i~-~~a~~~~---------~~~-~~~w~~~~~~~~~~l~ 330 (342)
T COG1194 295 TFTHFRLTIE-LRASASL---------VLS-DGRWYNLSDLESIGLP 330 (342)
T ss_pred eeeEEEEEEE-EEeeccc---------CCC-Cceecccccccccccc
Confidence 4444444433 3332111 222 6899999999988875
No 102
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=95.84 E-value=0.21 Score=41.50 Aligned_cols=53 Identities=26% Similarity=0.409 Sum_probs=35.9
Q ss_pred eeEEEEEEE-eCC--eeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCc
Q 023855 108 RVGVGAFVM-NGK--REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166 (276)
Q Consensus 108 ~v~v~~vv~-~~~--~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~ 166 (276)
+.+|.+|++ ... -+|||.|... ..|.+|||.+.+||+..++..|.+.+-.|..
T Consensus 43 RrsVe~Vllvh~h~~PHvLLLq~~~------~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~ 98 (188)
T PF13869_consen 43 RRSVEGVLLVHEHGHPHVLLLQIGN------TFFKLPGGRLRPGEDEIEGLKRKLTEKLSPE 98 (188)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEETT------TEEE-SEEE--TT--HHHHHHHHHHHHHB-S
T ss_pred ceEEEEEEEEecCCCcEEEEEeccC------ccccCCccEeCCCCChhHHHHHHHHHHcCCC
Confidence 344555444 333 3799998653 5799999999999999999999999999876
No 103
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=95.35 E-value=0.4 Score=41.31 Aligned_cols=115 Identities=23% Similarity=0.322 Sum_probs=71.9
Q ss_pred CcceeEEEEEEEeCC---eeEEEEEeccCCCCCCCcEEC-CccccCCCCCHHHHHHHHHHHHhCCcceeeEE-E--EE--
Q 023855 105 ASHRVGVGAFVMNGK---REVLVVQENSGRFRGTGIWKF-PTGVVDEGEDICVAAVREVKEETSIDTEFVEV-L--AF-- 175 (276)
Q Consensus 105 ~~~~v~v~~vv~~~~---~~vLLvkr~~~~~~~~~~W~l-PgG~ve~gEs~~eaA~REl~EEtGl~~~~~~~-l--~~-- 175 (276)
.+..+.+.+.|.+.. -++.+.||.+.+-..++.|+- .||++..|-.+.++|+.|..||+.+......- . |.
T Consensus 130 ~~yGvhingYV~~pk~~~l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VS 209 (306)
T KOG4313|consen 130 RKYGVHINGYVRHPKLGPLCIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVS 209 (306)
T ss_pred EEeeeeeeeeecCCCcCceEEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeE
Confidence 334445555565532 368888988777667888864 68999999999999999999999998732211 1 21
Q ss_pred -E--eeccCCCceEEEEEEEEEecCCcCcCCCccccceEEEEehhhhh
Q 023855 176 -R--QSHQSFFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYA 220 (276)
Q Consensus 176 -~--~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~ 220 (276)
. ......+....++|-..+ +....++..+.|...+..+++.+..
T Consensus 210 y~~~esr~~~~pe~qYVfDL~l-~~d~iP~~nDGEV~~F~Lltl~~~v 256 (306)
T KOG4313|consen 210 YYKFESRQGLFPETQYVFDLEL-PLDFIPQNNDGEVQAFELLTLKDCV 256 (306)
T ss_pred EEeeehhhccCccceEEEeccC-chhhcCCCCCCceeeEeeecHHHHH
Confidence 1 111122333333333322 2233345566888888888877654
No 104
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=93.91 E-value=0.15 Score=41.21 Aligned_cols=39 Identities=28% Similarity=0.397 Sum_probs=34.6
Q ss_pred eeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhC
Q 023855 120 REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETS 164 (276)
Q Consensus 120 ~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtG 164 (276)
-+|||.|-. .-.+++|||..++||+-.+...|-+-|-.|
T Consensus 84 PHvLLLQig------~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg 122 (221)
T KOG1689|consen 84 PHVLLLQIG------NTFFKLPGGRLRPGEDEADGLKRLLTESLG 122 (221)
T ss_pred CeEEEEeeC------CEEEecCCCccCCCcchhHHHHHHHHHHhc
Confidence 478888764 367999999999999999999999999999
No 105
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=93.08 E-value=0.77 Score=39.70 Aligned_cols=99 Identities=16% Similarity=0.215 Sum_probs=61.1
Q ss_pred eeEEEEEeccCCCCCCCcEECCcccc-CCCCCHHHHHHHHHHHHhCCcceeeE----EEEEEee--ccC---CC--ceEE
Q 023855 120 REVLVVQENSGRFRGTGIWKFPTGVV-DEGEDICVAAVREVKEETSIDTEFVE----VLAFRQS--HQS---FF--EKSD 187 (276)
Q Consensus 120 ~~vLLvkr~~~~~~~~~~W~lPgG~v-e~gEs~~eaA~REl~EEtGl~~~~~~----~l~~~~~--~~~---~~--~~~~ 187 (276)
.=+||++++-+. .+.|.||-+.. +.++++..+|.|++.+-.|=.....- .++.... ... .. +...
T Consensus 139 ~LyLLV~~k~g~---~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~e~~~~sk~ 215 (263)
T KOG4548|consen 139 KLYLLVKRKFGK---SSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTTEEPVSSKV 215 (263)
T ss_pred eEEEEEeeccCc---cceeeCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCccccccccccccee
Confidence 347888866443 47899999999 99999999999999998886653221 1221000 000 01 1224
Q ss_pred EEEEEEEecCCcCcCCCccccceEEEEehhhhhcCCC
Q 023855 188 IFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPY 224 (276)
Q Consensus 188 ~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~ 224 (276)
.+|-|.+...+. .+..-..++.|++-+|+.+..-
T Consensus 216 ff~k~~lv~~~~---~kn~n~edfvWvTkdel~e~l~ 249 (263)
T KOG4548|consen 216 FFFKASLVANSN---QKNQNKEDFVWVTKDELGEKLP 249 (263)
T ss_pred EEeeeeeccccc---hhcccccceEEechHHHhhhcc
Confidence 455555544322 1223344599999999988643
No 106
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=91.03 E-value=0.66 Score=41.19 Aligned_cols=34 Identities=29% Similarity=0.321 Sum_probs=24.9
Q ss_pred eEEEEEE-EeCCeeEEEEEeccCCCCCCCcEECCcc
Q 023855 109 VGVGAFV-MNGKREVLVVQENSGRFRGTGIWKFPTG 143 (276)
Q Consensus 109 v~v~~vv-~~~~~~vLLvkr~~~~~~~~~~W~lPgG 143 (276)
....+++ .+.++++|+++|.....++ |.|+||+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~r~~~~~~~-gl~~~p~~ 261 (275)
T TIGR01084 227 RTTYFLVLQNYDGEVLLEQRPEKGLWG-GLYCFPQF 261 (275)
T ss_pred EEEEEEEEEeCCCeEEEEeCCCCchhh-ccccCCCC
Confidence 3334444 4567899999998877764 99999963
No 107
>COG4111 Uncharacterized conserved protein [General function prediction only]
Probab=70.36 E-value=40 Score=29.52 Aligned_cols=72 Identities=24% Similarity=0.401 Sum_probs=45.2
Q ss_pred EEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHH-HHHHhCCcceeeEEEE-EEeeccCC---CceEEEE
Q 023855 115 VMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVRE-VKEETSIDTEFVEVLA-FRQSHQSF---FEKSDIF 189 (276)
Q Consensus 115 v~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~RE-l~EEtGl~~~~~~~l~-~~~~~~~~---~~~~~~~ 189 (276)
|.+..-+||-+.+.. .+|.|-.++.-.-.++..|+ |.+.|+.....++.+. +.+..... .....+-
T Consensus 32 v~~~~p~VLtV~q~~---------aLP~GPfep~hrslq~glr~wV~~qT~~plGYiEQLYTF~Dr~R~~~~g~rvisv~ 102 (322)
T COG4111 32 VTDGGPRVLTVRQGA---------ALPSGPFEPAHRSLQAGLRAWVEKQTSQPLGYIEQLYTFADRDRRNEGGMRVISVS 102 (322)
T ss_pred EcCCCceEEEecccc---------cCCCCCCchHHHHHHHHHHHHHHHHhcCccchHHhhhhhccccccCcCCceEEEEE
Confidence 333445777776542 29999999987777777777 5667999887777663 33322222 3345556
Q ss_pred EEEEEe
Q 023855 190 FLCMLR 195 (276)
Q Consensus 190 f~~~~~ 195 (276)
|+....
T Consensus 103 YLgLtr 108 (322)
T COG4111 103 YLGLTR 108 (322)
T ss_pred Eeeecc
Confidence 666543
No 108
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=68.29 E-value=4.8 Score=24.46 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=12.1
Q ss_pred CccccCCCCCHHHHHHHHHHHHh
Q 023855 141 PTGVVDEGEDICVAAVREVKEET 163 (276)
Q Consensus 141 PgG~ve~gEs~~eaA~REl~EEt 163 (276)
-||...+|--+...+.||+-||.
T Consensus 14 lggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 14 LGGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp ---------S-HHHHHHHHHHHH
T ss_pred hcccCCCCCCCchHHHHHHHHHH
Confidence 46777888889999999999996
No 109
>PF14443 DBC1: DBC1
Probab=64.09 E-value=31 Score=26.77 Aligned_cols=34 Identities=26% Similarity=0.318 Sum_probs=24.8
Q ss_pred CCcEECC--ccccCC-CCCHHHHHHHHHHHHhCCcce
Q 023855 135 TGIWKFP--TGVVDE-GEDICVAAVREVKEETSIDTE 168 (276)
Q Consensus 135 ~~~W~lP--gG~ve~-gEs~~eaA~REl~EEtGl~~~ 168 (276)
+|.|.-- ||-.+. ...+..+|+|=++|-||++..
T Consensus 23 GG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS 59 (126)
T PF14443_consen 23 GGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLS 59 (126)
T ss_pred CCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchh
Confidence 3677643 444444 245899999999999999974
No 110
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=56.56 E-value=3.3 Score=37.31 Aligned_cols=66 Identities=23% Similarity=0.305 Sum_probs=44.9
Q ss_pred CCCCCCCcceeEEEEEEEe--CCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcce
Q 023855 99 NTLPANASHRVGVGAFVMN--GKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168 (276)
Q Consensus 99 ~~~p~~~~~~v~v~~vv~~--~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~REl~EEtGl~~~ 168 (276)
++.|.+.......+.++.+ .+.-+.++.+... +..|.||.|.+..||-+.++++|+-.||+|....
T Consensus 229 ak~~e~~~~~~tl~~~~t~v~~d~~~~aqS~~~~----~e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~~ 296 (348)
T KOG2937|consen 229 AKFPEKKSTVPTLGAALTDVEMDHVVTAQSYFAK----PENWTFPKGKISRGEKPRDASIRSTFEEPGFPFG 296 (348)
T ss_pred hcCcccCccchhHHhhhhccccccceeecccccc----cccccCcccccccCCccccchhhhcCCCcCCccc
Confidence 3444444444444455555 2333444444332 4789999999999999999999999999998764
No 111
>PF12860 PAS_7: PAS fold
Probab=51.39 E-value=9.6 Score=28.31 Aligned_cols=43 Identities=12% Similarity=0.226 Sum_probs=34.3
Q ss_pred EEEEEEEeCCeeEEEEEeccCCCCCCCcEECCccccCCCCCHHHHHHH
Q 023855 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVR 157 (276)
Q Consensus 110 ~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~ve~gEs~~eaA~R 157 (276)
..|++++|.++++++.-++. ...|.+|...+.+|-++.+.+.+
T Consensus 5 ~~Gv~v~D~~~rl~~~N~~~-----~~l~~~~~~~~~~G~~~~~l~~~ 47 (115)
T PF12860_consen 5 PQGVAVFDSDGRLVFWNQRF-----RELFGLPPEMLRPGASFRDLLRR 47 (115)
T ss_pred CceEEEEcCCCeEEeEcHHH-----HHHhCCCHHHhcCCCCHHHHHHH
Confidence 46888999999999997774 36899999999888886665543
No 112
>PF08918 PhoQ_Sensor: PhoQ Sensor; InterPro: IPR015014 The PhoQ Sensor is required for the virulence of various Gram-negative bacteria by allowing interaction of PhoPQ with the intracellular membrane, resulting in remodelling of the bacterial cell surface and subsequent bacterial resistance to host antimicrobial peptides. The domain contains a major flat acidic surface, which binds to at least 3 calcium ions, neutralising the domain's negative charge and allowing interaction with the negatively charged membrane []. ; GO: 0004673 protein histidine kinase activity, 0005524 ATP binding, 0046872 metal ion binding, 0000160 two-component signal transduction system (phosphorelay), 0018106 peptidyl-histidine phosphorylation, 0016020 membrane; PDB: 1YAX_D 3BQA_B 3BQ8_B.
Probab=31.14 E-value=13 Score=30.35 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=24.1
Q ss_pred eEEEEeecCCC-CCCCCCCCcceeEEEEEEEeCCeeEEEEEec
Q 023855 87 YLMLVYWIPGG-ANTLPANASHRVGVGAFVMNGKREVLVVQEN 128 (276)
Q Consensus 87 ~~~l~~~~~~~-~~~~p~~~~~~v~v~~vv~~~~~~vLLvkr~ 128 (276)
|.++++|.++. ...+|+........-++|+|++|++|..+|.
T Consensus 50 f~sLAqW~dnkL~i~~P~~~~ln~ptL~~IYD~~G~lLW~qr~ 92 (180)
T PF08918_consen 50 FYSLAQWEDNKLTIEVPPNLDLNSPTLVLIYDENGKLLWRQRD 92 (180)
T ss_dssp HHHHEEEETTCEEE---TTHHTT-SEEEEEEETTS-EEEESS-
T ss_pred hhhhhheeCCeeEEeCCCccCCCCCeEEEEEcCCCcEEEecCc
Confidence 34566776542 3355655443344567999999999999885
No 113
>cd09232 Snurportin-1_C C-terminal m3G cap-binding domain of nuclear import adaptor snurportin-1. Snurportin-1 (SPN1 or SNUPN) is a nuclear import adaptor for m3G-capped spliceosomal U small nucleoproteins (snRNPs), which are assembled in the cytoplasm. After capping and assembly, the U snRNPs are transported into the nucleus by SPN1 and importin beta; SPN1 is then returned to the cytoplasm by exportin 1 (CRM1), which also transports the non-capped U snRNPs. The U snRNPs are essential elements of the spliceosome, which catalyzes the excision of introns and the ligation of exons to form a mature mRNA. SPN1 contains two domains, an N-terminal importin beta-binding (IBB) domain and a C-terminal m3G cap-binding domain.
Probab=30.97 E-value=26 Score=29.18 Aligned_cols=68 Identities=21% Similarity=0.265 Sum_probs=36.5
Q ss_pred eEEEEeecCCCCCCCCCC---CcceeEEEEEEEeCCeeEEEEEeccCCCCCCCcEECCcccc---CCCCCHHHHH
Q 023855 87 YLMLVYWIPGGANTLPAN---ASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVV---DEGEDICVAA 155 (276)
Q Consensus 87 ~~~l~~~~~~~~~~~p~~---~~~~v~v~~vv~~~~~~vLLvkr~~~~~~~~~~W~lPgG~v---e~gEs~~eaA 155 (276)
.+|+.-|+.+-|..+... ..-++|..++|+-.+|++.+..|..... ..-.-.||||.- ..|+++.++.
T Consensus 5 ~lml~Ewm~~~p~~l~~~w~~~~~P~G~R~lvv~~~g~t~~~~r~g~~~-~~f~s~lP~g~~~~~~~g~tILDci 78 (186)
T cd09232 5 QLMLSEWMVEVPDDLSEEWLVVPCPVGKRCLVVASKGKTVARSKNGRTL-HRFSSALPGGSRKTSNSGYTILDCI 78 (186)
T ss_pred ceechhhcccCCCccCcceEEEECcCceEEEEEEeCCEEEEEeCCCCEE-EecccCCCCCCcCCCCCCCEEEEEe
Confidence 345666665544443322 1223445555555578888877654332 223467899874 3456655554
No 114
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=25.52 E-value=83 Score=22.63 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=34.3
Q ss_pred HHHHHHHHhhccccCCCCcccccccccCCCCeeEEEeeccc
Q 023855 232 KYIVDICSAKVDTRGYHGFSPVPTTSAFSDKKHYFYLNSVD 272 (276)
Q Consensus 232 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 272 (276)
..++..|.+.+.. ..+.+.+....++++++...+|+++++
T Consensus 25 ~~al~~c~~~~~~-~~L~m~lvd~e~~~D~~k~~fyy~a~~ 64 (88)
T PF04468_consen 25 EEALKFCRELVKE-LGLPMKLVDVEYQFDGSKLTFYYTAES 64 (88)
T ss_pred HHHHHHHHHHHHH-cCCCeEEEEEEEEcCCCEEEEEEEeCC
Confidence 5677778888877 778999999999999999999998775
No 115
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=21.85 E-value=55 Score=29.76 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=18.5
Q ss_pred ccCCCCCHHHHHHHHHHHHhCCcc
Q 023855 144 VVDEGEDICVAAVREVKEETSIDT 167 (276)
Q Consensus 144 ~ve~gEs~~eaA~REl~EEtGl~~ 167 (276)
.|+..+-..+.+.||++||++|-+
T Consensus 408 ~V~~~dLsDe~~MrelReeL~IG~ 431 (466)
T PF09505_consen 408 GVEPMDLSDEYVMRELREELNIGV 431 (466)
T ss_pred CCChhhcccHHHHHHHHHhcCcce
Confidence 355566677889999999998754
No 116
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=21.33 E-value=1.9e+02 Score=20.87 Aligned_cols=47 Identities=17% Similarity=0.206 Sum_probs=35.5
Q ss_pred ChHHHHHHHHHHHHHHHHcCccEEEEEcccccccchHHHHhcCceeee
Q 023855 35 DPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHH 82 (276)
Q Consensus 35 ~~~~f~~~l~~~l~~w~~~~~~~iw~~~~~~~~~l~~~~~~~gf~~h~ 82 (276)
..-+|.+.+...++.+++. +..+|=-|-.....-+.-+-..|+.||.
T Consensus 37 ~~~eF~k~i~~~~d~~l~~-Y~~l~N~V~~~N~~HIRfLk~lGA~f~~ 83 (86)
T PF11090_consen 37 ERREFRKLIKEYLDKMLKQ-YPVLWNFVWVGNKSHIRFLKSLGAVFHN 83 (86)
T ss_pred hhHHHHHHHHHHHHHHHHH-hhheeEEEEeCCHHHHHHHHhcCcEEcc
Confidence 4467999999999999887 6667766666666666666667888774
No 117
>KOG4485 consensus Uncharacterized conserved protein, contains ankyrin and FN3 repeats [General function prediction only]
Probab=20.35 E-value=3.7e+02 Score=25.89 Aligned_cols=77 Identities=17% Similarity=0.363 Sum_probs=40.4
Q ss_pred cEECCccccCCCCCHH------------HHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEEEEEEecCCcCcCCC
Q 023855 137 IWKFPTGVVDEGEDIC------------VAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIFFLCMLRPLSFDIQKQ 204 (276)
Q Consensus 137 ~W~lPgG~ve~gEs~~------------eaA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 204 (276)
.|+=..|..+..|... -.|.-...|-.|++- +|..++.+-.+...+.+.+|. ..... ..
T Consensus 101 ~Wddik~L~ddmeralsnnvalhFRnKLinAacqMQeALGI~d-----iGhl~YkPL~dang~~~L~cV-q~ie~---qk 171 (724)
T KOG4485|consen 101 CWDDIKGLMDDMERALSNNVALHFRNKLINAACQMQEALGIRD-----IGHLHYKPLIDANGCFFLLCV-QFIEP---QK 171 (724)
T ss_pred hHHHHhhhhhhhhhhhcccchhhhHHHHHHHHHHHHHhhCccc-----ccceeeeeeecCCceEEEEEe-eeccc---cc
Confidence 4666667666555321 123445778888753 333333333233444444441 11111 11
Q ss_pred ccccceEEEEehhhhhcC
Q 023855 205 ESEIEAAEWMPLEEYAAQ 222 (276)
Q Consensus 205 ~~E~~~~~Wv~~~el~~~ 222 (276)
.-.+...+|+|+..+.+-
T Consensus 172 a~qiin~RWlP~nKL~kK 189 (724)
T KOG4485|consen 172 AFQIINLRWLPFNKLLKK 189 (724)
T ss_pred ceeeeeeeeeehHHHHHh
Confidence 234678999999998763
Done!