Your job contains 1 sequence.
>023857
MATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSRL
VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRT
GRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGM
TPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLS
EDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 023857
(276 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2077254 - symbol:RRF ""ribosome recycling fact... 846 1.7e-84 1
TIGR_CMR|CHY_1784 - symbol:CHY_1784 "ribosome recycling f... 454 5.7e-43 1
TIGR_CMR|GSU_1918 - symbol:GSU_1918 "ribosome recycling f... 454 5.7e-43 1
TIGR_CMR|BA_3962 - symbol:BA_3962 "ribosome recycling fac... 450 1.5e-42 1
TIGR_CMR|DET_0374 - symbol:DET_0374 "ribosome recycling f... 438 2.8e-41 1
TIGR_CMR|CPS_1556 - symbol:CPS_1556 "ribosome recycling f... 429 2.6e-40 1
UNIPROTKB|P0A805 - symbol:frr "ribosome recycling factor"... 425 6.8e-40 1
TIGR_CMR|SO_1632 - symbol:SO_1632 "ribosome recycling fac... 423 1.1e-39 1
UNIPROTKB|P66734 - symbol:frr "Ribosome-recycling factor"... 419 2.9e-39 1
TIGR_CMR|VC_2257 - symbol:VC_2257 "ribosome recycling fac... 415 7.8e-39 1
TIGR_CMR|CJE_0285 - symbol:CJE_0285 "ribosome recycling f... 398 4.9e-37 1
TIGR_CMR|CBU_1383 - symbol:CBU_1383 "ribosome recycling f... 375 1.3e-34 1
TIGR_CMR|ECH_0267 - symbol:ECH_0267 "ribosome recycling f... 354 2.3e-32 1
TIGR_CMR|APH_0112 - symbol:APH_0112 "ribosome recycling f... 350 6.0e-32 1
TIGR_CMR|SPO_1664 - symbol:SPO_1664 "ribosome recycling f... 350 6.0e-32 1
TIGR_CMR|NSE_0945 - symbol:NSE_0945 "ribosome recycling f... 303 5.7e-27 1
TAIR|locus:2082309 - symbol:AT3G01800 species:3702 "Arabi... 292 8.4e-26 1
DICTYBASE|DDB_G0268518 - symbol:DDB_G0268518 "Ribosome-re... 273 8.7e-24 1
UNIPROTKB|Q96E11 - symbol:MRRF "Ribosome-recycling factor... 211 3.2e-17 1
UNIPROTKB|E1BQ58 - symbol:MRRF "Uncharacterized protein" ... 186 7.3e-17 2
UNIPROTKB|J9P265 - symbol:MRRF "Uncharacterized protein" ... 206 1.1e-16 1
UNIPROTKB|F1SLQ7 - symbol:LOC100515005 "Uncharacterized p... 203 2.3e-16 1
MGI|MGI:1915121 - symbol:Mrrf "mitochondrial ribosome rec... 203 2.3e-16 1
UNIPROTKB|Q0VCQ4 - symbol:MRRF "Ribosome-recycling factor... 202 2.9e-16 1
RGD|1305897 - symbol:Mrrf "mitochondrial ribosome recycli... 197 9.8e-16 1
ZFIN|ZDB-GENE-040704-12 - symbol:mrrf "mitochondrial ribo... 189 6.9e-15 1
FB|FBgn0035980 - symbol:CG4447 species:7227 "Drosophila m... 172 7.6e-12 1
SGD|S000001080 - symbol:RRF1 "Mitochondrial ribosome recy... 163 4.5e-11 1
UNIPROTKB|Q4TT42 - symbol:MRRFP1 "Protein MRRFP1" species... 165 1.1e-10 1
CGD|CAL0005804 - symbol:orf19.477 species:5476 "Candida a... 142 9.4e-08 1
UNIPROTKB|Q5A6S7 - symbol:RRF1 "Potential mitochondrial r... 142 9.4e-08 1
ASPGD|ASPL0000049715 - symbol:AN10205 species:162425 "Eme... 128 4.4e-06 1
UNIPROTKB|G3X7D8 - symbol:MRRF "Ribosome-recycling factor... 108 9.2e-06 1
POMBASE|SPBC1709.09 - symbol:rrf1 "mitochondrial translat... 120 3.4e-05 1
TAIR|locus:2061300 - symbol:AT2G31410 "AT2G31410" species... 109 0.00037 1
WB|WBGene00020625 - symbol:mrrf-1 species:6239 "Caenorhab... 110 0.00049 1
>TAIR|locus:2077254 [details] [associations]
symbol:RRF ""ribosome recycling factor, chloroplast
precursor"" species:3702 "Arabidopsis thaliana" [GO:0006412
"translation" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0042742
"defense response to bacterium" evidence=IEP] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009817 "defense response to
fungus, incompatible interaction" evidence=IDA] [GO:0005507 "copper
ion binding" evidence=IDA] [GO:0009658 "chloroplast organization"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0032544 "plastid translation" evidence=IMP] [GO:0006098
"pentose-phosphate shunt" evidence=RCA] [GO:0009073 "aromatic amino
acid family biosynthetic process" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0016226
"iron-sulfur cluster assembly" evidence=RCA] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0019408 "dolichol
biosynthetic process" evidence=RCA] InterPro:IPR002661 Pfam:PF01765
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0042742
GO:GO:0005507 GO:GO:0009658 GO:GO:0009817 GO:GO:0009790
GO:GO:0009579 GO:GO:0032544 EMBL:AL138648 eggNOG:COG0233 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982 EMBL:AF372883
EMBL:AY056778 EMBL:AY092982 EMBL:BT002678 IPI:IPI00545948
RefSeq:NP_567141.1 UniGene:At.19134 ProteinModelPortal:Q9M1X0
SMR:Q9M1X0 STRING:Q9M1X0 PaxDb:Q9M1X0 PRIDE:Q9M1X0 ProMEX:Q9M1X0
EnsemblPlants:AT3G63190.1 GeneID:825494 KEGG:ath:AT3G63190
TAIR:At3g63190 HOGENOM:HOG000040143 InParanoid:Q9M1X0 OMA:TREHRES
PhylomeDB:Q9M1X0 ProtClustDB:CLSN2917503 Genevestigator:Q9M1X0
GermOnline:AT3G63190 TIGRFAMs:TIGR00496 Uniprot:Q9M1X0
Length = 275
Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
Identities = 179/277 (64%), Positives = 214/277 (77%)
Query: 1 MATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSS-AANYSR 59
MA FSST P + + ++N K LL LPDSC R +A ++ + + +
Sbjct: 1 MAASFSSTAPTTPVLRFRANYSKPLLSLPDSCLRIISSAISPSTRLIACSFKTDKLPLGA 60
Query: 60 LVKLSNKPIVVRQLAHKRNGVVRCATXXXXXXXXXXXXXDVKARMERTIDMVRTNFNSVR 119
V LS P+V R L KR V+R AT DVK++ME+TI+ +RT+FNS+R
Sbjct: 61 GVNLSGGPVVKRSL-QKRL-VIRSATIEEIEAEKSAIETDVKSKMEKTIETLRTSFNSIR 118
Query: 120 TGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLG 179
TGRSN AMLDKIEVEYYGSPVSLKSIAQI+TPD SSLL+QPYDKSSLK+IEKAIV+SDLG
Sbjct: 119 TGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLLQPYDKSSLKAIEKAIVNSDLG 178
Query: 180 MTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKL 239
+TPNNDG+VIRL+LP LTS+RRKELSKVVAKQ+EEGKVA+RNIRRDALK+Y+KL+KEKKL
Sbjct: 179 VTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQSEEGKVALRNIRRDALKSYDKLEKEKKL 238
Query: 240 SEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
SEDNVKDLSSDLQKL D YMKKI+ +YKQKEKEL+KV
Sbjct: 239 SEDNVKDLSSDLQKLIDVYMKKIEELYKQKEKELMKV 275
>TIGR_CMR|CHY_1784 [details] [associations]
symbol:CHY_1784 "ribosome recycling factor" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0006412
"translation" evidence=ISS] [GO:0008135 "translation factor
activity, nucleic acid binding" evidence=ISS] HAMAP:MF_00040
InterPro:IPR002661 Pfam:PF01765 GO:GO:0005737 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 eggNOG:COG0233 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
HOGENOM:HOG000040143 TIGRFAMs:TIGR00496 OMA:VMVEYYG
RefSeq:YP_360604.1 ProteinModelPortal:Q3AB80 SMR:Q3AB80
STRING:Q3AB80 GeneID:3728266 KEGG:chy:CHY_1784 PATRIC:21276679
BioCyc:CHYD246194:GJCN-1783-MONOMER Uniprot:Q3AB80
Length = 185
Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
Identities = 85/178 (47%), Positives = 129/178 (72%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ + M++ I++++ F ++R GR+ PA+L+K+ VEYYG+ + + +A I+ P+ L+I
Sbjct: 8 EAQDHMQKAIEVLKKEFATMRVGRATPALLEKVVVEYYGTQMPVNQLATISAPEPRLLVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+DK +L +IEKAI+ SDLG+TP NDG VIRL +P LT ERR+EL KV K+AEE +VA
Sbjct: 68 QPWDKGALGAIEKAILKSDLGITPTNDGSVIRLAIPPLTQERRQELVKVARKKAEEARVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA + L+K+K +SED K ++QKLTD+++K +D + K KE E+L +
Sbjct: 128 IRNIRRDANDRIKDLEKDKVISEDEGKRGQDEVQKLTDKFIKTVDELLKAKEDEILSI 185
>TIGR_CMR|GSU_1918 [details] [associations]
symbol:GSU_1918 "ribosome recycling factor" species:243231
"Geobacter sulfurreducens PCA" [GO:0006412 "translation"
evidence=ISS] [GO:0008135 "translation factor activity, nucleic
acid binding" evidence=ISS] HAMAP:MF_00040 InterPro:IPR002661
Pfam:PF01765 GO:GO:0005737 GO:GO:0006412 EMBL:AE017180
GenomeReviews:AE017180_GR eggNOG:COG0233 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
HOGENOM:HOG000040143 TIGRFAMs:TIGR00496 OMA:VMVEYYG
ProtClustDB:PRK00083 RefSeq:NP_952967.1 ProteinModelPortal:P61304
GeneID:2685328 KEGG:gsu:GSU1918 PATRIC:22026701
BioCyc:GSUL243231:GH27-1975-MONOMER Uniprot:P61304
Length = 185
Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
Identities = 79/178 (44%), Positives = 132/178 (74%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D+K+ ME++++ +R + VRTGR+N +LD+I V++YG+P L +A + P+ ++ I
Sbjct: 8 DMKSHMEKSVESLRREYQKVRTGRANTGLLDEIRVDFYGNPSPLNQVATLAVPEPRTITI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP++ + IEKAI++++LG TP+NDG++IR++LP LT ERRKE+ K + K AE+ K+A
Sbjct: 68 QPWETKMIPVIEKAILNANLGFTPSNDGKLIRISLPPLTEERRKEIVKSLKKTAEDAKIA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ +KL+K+KK+SED++K ++Q +T+ Y+ K+D + KEKE+++V
Sbjct: 128 IRNIRRDAIDGLKKLEKDKKISEDDLKRAEKEVQDVTNVYVAKVDEVLAHKEKEVMEV 185
>TIGR_CMR|BA_3962 [details] [associations]
symbol:BA_3962 "ribosome recycling factor" species:198094
"Bacillus anthracis str. Ames" [GO:0006415 "translational
termination" evidence=ISS] [GO:0008135 "translation factor
activity, nucleic acid binding" evidence=ISS] HAMAP:MF_00040
InterPro:IPR002661 Pfam:PF01765 GO:GO:0005737 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
eggNOG:COG0233 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 HOGENOM:HOG000040143 TIGRFAMs:TIGR00496
OMA:VMVEYYG RefSeq:NP_846205.1 RefSeq:YP_020601.1
RefSeq:YP_029926.1 PDB:4GFQ PDBsum:4GFQ ProteinModelPortal:Q81WL1
SMR:Q81WL1 DNASU:1086824 EnsemblBacteria:EBBACT00000008993
EnsemblBacteria:EBBACT00000015628 EnsemblBacteria:EBBACT00000020750
GeneID:1086824 GeneID:2819578 GeneID:2850618 KEGG:ban:BA_3962
KEGG:bar:GBAA_3962 KEGG:bat:BAS3675 ProtClustDB:PRK00083
BioCyc:BANT260799:GJAJ-3733-MONOMER
BioCyc:BANT261594:GJ7F-3850-MONOMER Uniprot:Q81WL1
Length = 185
Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
Identities = 83/174 (47%), Positives = 126/174 (72%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+ME+ + +VR GR++ ++LDK++V+YYG+P + +A I P++ L+IQPYD
Sbjct: 12 KMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+S+ IEKAI+ +DLG+ P+NDG VIR+ P LT ERR++L KVV K AEE KVAVRN+
Sbjct: 72 KTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNV 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD +KL+K +++ED+++ + D+QK TD+Y+ K+D I K KEKE+++V
Sbjct: 132 RRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIMEV 185
>TIGR_CMR|DET_0374 [details] [associations]
symbol:DET_0374 "ribosome recycling factor" species:243164
"Dehalococcoides ethenogenes 195" [GO:0006412 "translation"
evidence=ISS] [GO:0008135 "translation factor activity, nucleic
acid binding" evidence=ISS] HAMAP:MF_00040 InterPro:IPR002661
Pfam:PF01765 GO:GO:0005737 GO:GO:0006412 EMBL:CP000027
GenomeReviews:CP000027_GR eggNOG:COG0233 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
HOGENOM:HOG000040143 TIGRFAMs:TIGR00496 OMA:VMVEYYG
ProtClustDB:PRK00083 RefSeq:YP_181120.1 ProteinModelPortal:Q3Z9H9
STRING:Q3Z9H9 GeneID:3230312 KEGG:det:DET0374 PATRIC:21607817
BioCyc:DETH243164:GJNF-374-MONOMER Uniprot:Q3Z9H9
Length = 185
Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
Identities = 81/174 (46%), Positives = 125/174 (71%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M ++D++ + +RTGRS+PA+++ I+VEY G P + +A I PD + IQP+D
Sbjct: 12 KMAASLDVLSQELSGIRTGRSSPALVEHIKVEYAGVPTPINHLASIAAPDPRYITIQPWD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
+S L +IEKAI+ SDLG+ PNNDG +IRL +P L+ ERR+E+ K+V+K+ EE K+A+RN+
Sbjct: 72 RSCLSAIEKAIMKSDLGLMPNNDGNIIRLNIPPLSEERRQEMIKMVSKRLEEDKIAMRNV 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA+ +KL+K K++S+D++K S LQK+TD ++ K D + KE EL +V
Sbjct: 132 RRDAMDEMKKLEKSKEISQDDLKRGSDQLQKITDSFIAKADKLGADKETELKQV 185
>TIGR_CMR|CPS_1556 [details] [associations]
symbol:CPS_1556 "ribosome recycling factor" species:167879
"Colwellia psychrerythraea 34H" [GO:0006412 "translation"
evidence=ISS] [GO:0008135 "translation factor activity, nucleic
acid binding" evidence=ISS] HAMAP:MF_00040 InterPro:IPR002661
Pfam:PF01765 GO:GO:0005737 GO:GO:0006412 EMBL:CP000083
GenomeReviews:CP000083_GR eggNOG:COG0233 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
HOGENOM:HOG000040143 TIGRFAMs:TIGR00496 OMA:VMVEYYG
RefSeq:YP_268298.1 ProteinModelPortal:Q485G7 SMR:Q485G7
STRING:Q485G7 GeneID:3518539 KEGG:cps:CPS_1556 PATRIC:21466319
BioCyc:CPSY167879:GI48-1637-MONOMER Uniprot:Q485G7
Length = 185
Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 79/178 (44%), Positives = 125/178 (70%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + RM ++I+ ++T+ +RTGR++ ++LD I VEYYG L + ++ PD+ +L I
Sbjct: 8 DAQDRMGKSIEALKTSLTKIRTGRAHASLLDNIVVEYYGMDTPLNQVGNVSVPDARNLSI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+DKS + ++EKAI+ SDLG+ P ++G +IR+ LP LT ERRK+L KVV +AE GKVA
Sbjct: 68 TVFDKSMISAVEKAIMKSDLGLNPQSNGTLIRIPLPPLTEERRKDLVKVVRGEAEGGKVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA ++ L KEK++SED+ +QK+TD ++K++D + +KE EL+++
Sbjct: 128 IRNIRRDANSDFKSLLKEKEISEDDHHQAEDSIQKITDVFVKQVDEVLVKKEAELMEI 185
>UNIPROTKB|P0A805 [details] [associations]
symbol:frr "ribosome recycling factor" species:83333
"Escherichia coli K-12" [GO:0043022 "ribosome binding"
evidence=IDA] [GO:0032790 "ribosome disassembly" evidence=IMP]
[GO:0006412 "translation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] HAMAP:MF_00040 InterPro:IPR002661 Pfam:PF01765
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0043022 EMBL:U70214
GO:GO:0032790 EMBL:D13334 PDB:2RDO PDBsum:2RDO eggNOG:COG0233
KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
HOGENOM:HOG000040143 TIGRFAMs:TIGR00496 OMA:VMVEYYG
ProtClustDB:PRK00083 EMBL:J05113 EMBL:M69029 PIR:A34495
RefSeq:NP_414714.1 RefSeq:YP_488474.1 PDB:1EK8 PDB:1ISE PDB:1ZN0
PDB:1ZN1 PDB:4GAS PDB:4GD1 PDBsum:1EK8 PDBsum:1ISE PDBsum:1ZN0
PDBsum:1ZN1 PDBsum:4GAS PDBsum:4GD1 ProteinModelPortal:P0A805
SMR:P0A805 DIP:DIP-48120N IntAct:P0A805 MINT:MINT-1308979
SWISS-2DPAGE:P0A805 PaxDb:P0A805 PRIDE:P0A805
EnsemblBacteria:EBESCT00000001100 EnsemblBacteria:EBESCT00000016070
GeneID:12930756 GeneID:946122 KEGG:ecj:Y75_p0168 KEGG:eco:b0172
PATRIC:32115453 EchoBASE:EB0331 EcoGene:EG10335
BioCyc:EcoCyc:EG10335-MONOMER BioCyc:ECOL316407:JW0167-MONOMER
EvolutionaryTrace:P0A805 Genevestigator:P0A805 Uniprot:P0A805
Length = 185
Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 80/177 (45%), Positives = 125/177 (70%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + RM++ ++ +T + +RTGR++P++LD I VEYYG+P L+ +A + DS +L I
Sbjct: 8 DAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+D+S ++EKAI++SDLG+ PN+ G IR+ LP LT ERRK+L+K+V +AE+ +VA
Sbjct: 68 NVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
VRN+RRDA + L K+K++SED+ + D+QKLTD +KKI++ KE EL++
Sbjct: 128 VRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAELMQ 184
>TIGR_CMR|SO_1632 [details] [associations]
symbol:SO_1632 "ribosome recycling factor" species:211586
"Shewanella oneidensis MR-1" [GO:0006412 "translation"
evidence=ISS] [GO:0008135 "translation factor activity, nucleic
acid binding" evidence=ISS] HAMAP:MF_00040 InterPro:IPR002661
Pfam:PF01765 GO:GO:0005737 GO:GO:0006412 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0233 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
HOGENOM:HOG000040143 TIGRFAMs:TIGR00496 OMA:VMVEYYG
ProtClustDB:PRK00083 RefSeq:NP_717243.1 ProteinModelPortal:Q8EGH2
SMR:Q8EGH2 GeneID:1169426 KEGG:son:SO_1632 PATRIC:23522898
Uniprot:Q8EGH2
Length = 185
Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
Identities = 77/178 (43%), Positives = 123/178 (69%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + RM + +D + VRTGR++P++LD I+V YYG+ L +A + D+ +L +
Sbjct: 8 DAQERMGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGVEDARTLSV 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+D+S+++++EKAI+SSDLG+ P + G +R+ LP LT ERRK+ KVV +AE G+VA
Sbjct: 68 TVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRAEAEGGRVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RN+RRDA+ +KL+K K+ +ED+V+ ++QK TD ++KK+D I KE EL++V
Sbjct: 128 IRNVRRDAISDVKKLEKAKECTEDDVRRFEDEVQKFTDAHIKKVDEILAAKEIELMEV 185
>UNIPROTKB|P66734 [details] [associations]
symbol:frr "Ribosome-recycling factor" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0006415
"translational termination" evidence=IDA] [GO:0008079 "translation
termination factor activity" evidence=IDA] [GO:0040007 "growth"
evidence=IMP] HAMAP:MF_00040 InterPro:IPR002661 Pfam:PF01765
GO:GO:0005886 GO:GO:0005737 GO:GO:0040007 GO:GO:0005618
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
EMBL:BX842581 GO:GO:0008079 eggNOG:COG0233 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
HOGENOM:HOG000040143 TIGRFAMs:TIGR00496 OMA:VMVEYYG
ProtClustDB:PRK00083 PIR:E70924 RefSeq:NP_217398.1
RefSeq:NP_337460.1 RefSeq:YP_006516334.1 PDB:1WQF PDB:1WQG PDB:1WQH
PDBsum:1WQF PDBsum:1WQG PDBsum:1WQH ProteinModelPortal:P66734
SMR:P66734 PRIDE:P66734 EnsemblBacteria:EBMYCT00000002392
EnsemblBacteria:EBMYCT00000072289 GeneID:13317674 GeneID:887464
GeneID:925331 KEGG:mtc:MT2949 KEGG:mtu:Rv2882c KEGG:mtv:RVBD_2882c
PATRIC:18128256 TubercuList:Rv2882c EvolutionaryTrace:P66734
Uniprot:P66734
Length = 185
Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
Identities = 77/178 (43%), Positives = 121/178 (67%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + +ME+ + + R + +++RTGR+NP M +I ++YYG+ + +A IN P++ ++I
Sbjct: 8 DAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+PY+ + L++IE AI +SDLG+ P NDG +IR+ +PQLT ERR+EL K + EE KV+
Sbjct: 68 KPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVS 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRNIRR A++ +++KE + ED V DL K T +Y+ +ID + K KE ELL+V
Sbjct: 128 VRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVKHKEGELLEV 185
>TIGR_CMR|VC_2257 [details] [associations]
symbol:VC_2257 "ribosome recycling factor" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006417 "regulation of
translation" evidence=ISS] [GO:0045182 "translation regulator
activity" evidence=ISS] HAMAP:MF_00040 InterPro:IPR002661
Pfam:PF01765 GO:GO:0005737 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR eggNOG:COG0233 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
TIGRFAMs:TIGR00496 OMA:VMVEYYG ProtClustDB:PRK00083 PIR:G82099
RefSeq:NP_231888.1 ProteinModelPortal:Q9KPV5 SMR:Q9KPV5
GeneID:2613179 KEGG:vch:VC2257 PATRIC:20083557 Uniprot:Q9KPV5
Length = 185
Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
Identities = 78/178 (43%), Positives = 123/178 (69%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + RME++++ ++ + +RTGR++P++L I V+YYG+P L +A + D+ +L I
Sbjct: 8 DAQERMEKSVEALKNGLSKIRTGRAHPSLLTGISVDYYGAPTPLNQVANVIAEDARTLAI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+D+ + +EKAI+ SDLG+ P + G +IR+ LP LT ERR++L K+V +AE G+VA
Sbjct: 68 TVFDRELTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIVRGEAEGGRVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRNIRRDA + L K+K++SED+ + ++QKLTD +KKID + KEKEL++V
Sbjct: 128 VRNIRRDANNDLKALLKDKEISEDDERRAQEEIQKLTDAAVKKIDDVLAAKEKELMEV 185
>TIGR_CMR|CJE_0285 [details] [associations]
symbol:CJE_0285 "ribosome recycling factor" species:195099
"Campylobacter jejuni RM1221" [GO:0006412 "translation"
evidence=ISS] [GO:0008135 "translation factor activity, nucleic
acid binding" evidence=ISS] HAMAP:MF_00040 InterPro:IPR002661
Pfam:PF01765 GO:GO:0005737 GO:GO:0006412 EMBL:CP000025
GenomeReviews:CP000025_GR eggNOG:COG0233 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
HOGENOM:HOG000040143 TIGRFAMs:TIGR00496 OMA:VMVEYYG
ProtClustDB:PRK00083 RefSeq:YP_178307.1 ProteinModelPortal:Q5HWM8
STRING:Q5HWM8 GeneID:3231047 KEGG:cjr:CJE0285 PATRIC:20042268
BioCyc:CJEJ195099:GJC0-290-MONOMER Uniprot:Q5HWM8
Length = 185
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 76/176 (43%), Positives = 118/176 (67%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K + E++++ ++ +F ++RTG+ N +LD I V+YYG+ L +A + D+S++ I P
Sbjct: 10 KTQSEKSLEALKKDFTTLRTGKVNTHILDHITVDYYGTQTPLNQVATVLASDASTISITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
++K LK+IE AI ++++G+ PNNDGE ++L P +T E+R+E K E+ KV++R
Sbjct: 70 WEKPLLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENVKQAKAMGEKAKVSIR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIR+DA A +KL+K+K +SED K ++QKLTD Y KID K KE ELLKV
Sbjct: 130 NIRKDANDAVKKLEKDKAISEDEAKKAYDEVQKLTDTYTTKIDESVKNKESELLKV 185
>TIGR_CMR|CBU_1383 [details] [associations]
symbol:CBU_1383 "ribosome recycling factor" species:227377
"Coxiella burnetii RSA 493" [GO:0006412 "translation" evidence=ISS]
[GO:0008135 "translation factor activity, nucleic acid binding"
evidence=ISS] HAMAP:MF_00040 InterPro:IPR002661 Pfam:PF01765
GO:GO:0005737 GO:GO:0006412 EMBL:AE016828 GenomeReviews:AE016828_GR
eggNOG:COG0233 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 HOGENOM:HOG000040143 TIGRFAMs:TIGR00496
OMA:VMVEYYG ProtClustDB:PRK00083 RefSeq:NP_820372.1
ProteinModelPortal:Q83BV4 SMR:Q83BV4 PRIDE:Q83BV4 GeneID:1209289
KEGG:cbu:CBU_1383 PATRIC:17931511
BioCyc:CBUR227377:GJ7S-1371-MONOMER Uniprot:Q83BV4
Length = 185
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 75/178 (42%), Positives = 119/178 (66%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D K+RME+++ ++T +RT R++P++L+ I+V+YY L +A I + +L I
Sbjct: 8 DSKSRMEKSLGSLKTELAKLRTCRAHPSLLEHIKVDYYNVETPLSQVASIAIENPRTLSI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
P++K+ + IEKAI +DLG+ P G VIR+ LP LT ERRKEL++VV ++AE +VA
Sbjct: 68 TPWEKNMVGPIEKAIQKADLGLNPATVGMVIRVPLPPLTEERRKELARVVREEAEHARVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRR+A ++L KEK++SED + + +QKLTD + ++D + QKE +L+ V
Sbjct: 128 IRNIRREANNDLKELMKEKEISEDEERRAQTAIQKLTDAQIAEVDKMASQKEADLMAV 185
>TIGR_CMR|ECH_0267 [details] [associations]
symbol:ECH_0267 "ribosome recycling factor" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0006412 "translation" evidence=ISS] [GO:0008135
"translation factor activity, nucleic acid binding" evidence=ISS]
HAMAP:MF_00040 InterPro:IPR002661 Pfam:PF01765 GO:GO:0005737
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006412
eggNOG:COG0233 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 HOGENOM:HOG000040143 TIGRFAMs:TIGR00496
ProtClustDB:PRK00083 RefSeq:YP_507088.1 ProteinModelPortal:Q2GHJ5
STRING:Q2GHJ5 GeneID:3927666 KEGG:ech:ECH_0267 PATRIC:20576051
OMA:CEATTIR BioCyc:ECHA205920:GJNR-267-MONOMER Uniprot:Q2GHJ5
Length = 185
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 66/178 (37%), Positives = 123/178 (69%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D K+RME+++ + ++ + +RTGR+ ++L+ I VE YG V L +I+ ++ D+ +L+I
Sbjct: 8 DAKSRMEKSLSVYLSDIDGIRTGRARTSVLNGIVVETYGGRVKLNTISSVSVSDNKTLMI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+ +D +++ +I+ AI++S+LG + + IRLT+P +T + RK L K++ K +E+ +V+
Sbjct: 68 KVWDSNNIGAIKTAIMNSNLGFGISCEATTIRLTVPDMTQDMRKNLVKLLGKISEDCRVS 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRD + + +Q K++SED+++ ++QK+TD+ MKK++ + KEKELL V
Sbjct: 128 IRNIRRDIMDRLKVMQDSKEISEDDLRVAGVEIQKITDDIMKKVNDAFTSKEKELLHV 185
>TIGR_CMR|APH_0112 [details] [associations]
symbol:APH_0112 "ribosome recycling factor" species:212042
"Anaplasma phagocytophilum HZ" [GO:0006412 "translation"
evidence=ISS] [GO:0008135 "translation factor activity, nucleic
acid binding" evidence=ISS] InterPro:IPR002661 Pfam:PF01765
GO:GO:0006412 EMBL:CP000235 GenomeReviews:CP000235_GR
eggNOG:COG0233 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 HOGENOM:HOG000040143 TIGRFAMs:TIGR00496
ProtClustDB:PRK00083 OMA:CEATTIR RefSeq:YP_504740.1
ProteinModelPortal:Q2GLL1 STRING:Q2GLL1 GeneID:3930282
KEGG:aph:APH_0112 PATRIC:20948788
BioCyc:APHA212042:GHPM-147-MONOMER Uniprot:Q2GLL1
Length = 184
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 68/172 (39%), Positives = 115/172 (66%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM++T M + + +RTGR + ++LD I V YYG+ V L +++ I+ + +LL+ +D
Sbjct: 13 RMDKTYAMFLNDISGIRTGRVSASLLDGISVSYYGNKVKLNTVSSISV-NGRTLLVSLWD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
S L ++ AI +S++G + +RL +P+LT++ RK L K++ K AEE KV++RNI
Sbjct: 72 ASILGEVKSAIEASNMGFGMTCESSTVRLVVPELTNDVRKNLVKMLNKLAEESKVSIRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
RRDA++ + LQ K++SED++ +S+++QK+TD ++KKI Y KE E+L
Sbjct: 132 RRDAIERLKSLQDNKEISEDDMHGVSAEIQKITDSFIKKIADAYTSKESEIL 183
>TIGR_CMR|SPO_1664 [details] [associations]
symbol:SPO_1664 "ribosome recycling factor" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0006412 "translation" evidence=ISS]
[GO:0008135 "translation factor activity, nucleic acid binding"
evidence=ISS] HAMAP:MF_00040 InterPro:IPR002661 Pfam:PF01765
GO:GO:0005737 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006412
eggNOG:COG0233 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 HOGENOM:HOG000040143 TIGRFAMs:TIGR00496
OMA:VMVEYYG ProtClustDB:PRK00083 RefSeq:YP_166903.1
ProteinModelPortal:Q5LSV2 GeneID:3193529 KEGG:sil:SPO1664
PATRIC:23376653 Uniprot:Q5LSV2
Length = 187
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 69/178 (38%), Positives = 115/178 (64%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D+K RM+ + ++T F S+RTGR++ +ML+ I+VE YG + I +N P+ + I
Sbjct: 11 DLKRRMDGAMANLKTEFASLRTGRASGSMLEPIQVEAYGQMTPINQIGTVNVPEPRMVTI 70
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+DKS + +EKAI S LG+ P +G +I L +P+L ERR+EL+KV + AE +VA
Sbjct: 71 NVWDKSMVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELTKVAGQYAEHARVA 130
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RN+RRD + +K K +SED+ K +++Q+LTD+ +K +D+ + K+ E+++V
Sbjct: 131 IRNVRRDGMDQIKKA-KADGISEDDQKFWEAEVQELTDKMIKVVDAALETKQAEIMQV 187
>TIGR_CMR|NSE_0945 [details] [associations]
symbol:NSE_0945 "ribosome recycling factor" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0006412 "translation" evidence=ISS] [GO:0008135
"translation factor activity, nucleic acid binding" evidence=ISS]
HAMAP:MF_00040 InterPro:IPR002661 Pfam:PF01765 GO:GO:0005737
GO:GO:0006412 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0233 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 HOGENOM:HOG000040143 TIGRFAMs:TIGR00496
OMA:VMVEYYG RefSeq:YP_506809.1 ProteinModelPortal:Q2GCI7
STRING:Q2GCI7 PRIDE:Q2GCI7 GeneID:3931454 KEGG:nse:NSE_0945
PATRIC:22681869 ProtClustDB:CLSK2527749
BioCyc:NSEN222891:GHFU-947-MONOMER Uniprot:Q2GCI7
Length = 185
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 61/174 (35%), Positives = 110/174 (63%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
++ + ++ ++ +R+G + ++LD + V + + L +A ++ ++ L +Q +D
Sbjct: 12 KLRSSYEVFLSDLKGIRSGSLSVSILDGVIVSTHMGKLRLNQVASLSVVNNKMLSVQVWD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS++ +++ AI++S+LGM P +G V+RL +P LT ERRKEL KV+ K + KVAVRNI
Sbjct: 72 KSTVGAVKDAILTSNLGMNPIVEGSVLRLPVPDLTEERRKELVKVLKKYGDRAKVAVRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA+ + L+K K++SE+++ L + K+ E +ID +KE ++LKV
Sbjct: 132 RRDAISRIKVLEKAKEISENDMHALLKKIDKIISEEDARIDDAVSKKETDILKV 185
>TAIR|locus:2082309 [details] [associations]
symbol:AT3G01800 species:3702 "Arabidopsis thaliana"
[GO:0005739 "mitochondrion" evidence=ISM;IDA] [GO:0006412
"translation" evidence=IEA;ISS] [GO:0006626 "protein targeting to
mitochondrion" evidence=RCA] [GO:0019408 "dolichol biosynthetic
process" evidence=RCA] InterPro:IPR002661 Pfam:PF01765
GO:GO:0005739 EMBL:CP002686 GO:GO:0006412 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982 EMBL:BT010432
EMBL:AK176317 EMBL:AK220929 IPI:IPI00527773 RefSeq:NP_186829.3
UniGene:At.43211 ProteinModelPortal:Q6NQM0 SMR:Q6NQM0 STRING:Q6NQM0
PRIDE:Q6NQM0 EnsemblPlants:AT3G01800.1 GeneID:821076
KEGG:ath:AT3G01800 TAIR:At3g01800 InParanoid:Q6NQM0 OMA:SMKSIEH
PhylomeDB:Q6NQM0 ProtClustDB:CLSN2680816 Genevestigator:Q6NQM0
Uniprot:Q6NQM0
Length = 267
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 62/172 (36%), Positives = 101/172 (58%)
Query: 102 ARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPY 161
++ME ID + + +RTGR+ P MLD I VE G + L +A ++ D +L + PY
Sbjct: 95 SQMEAAIDALSRDLTKLRTGRAAPGMLDHIVVETGGVKMPLNHLALVSVLDPKTLSVNPY 154
Query: 162 DKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRN 221
D ++K +EKAIV+S LG+ P DG+ + ++P LT E + + K+V K +E K ++R
Sbjct: 155 DPDTVKELEKAIVASPLGLNPKLDGQRLVASIPALTKEHIQAMCKIVTKSSEVVKQSIRR 214
Query: 222 IRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
R+ AL +K L +D VK L ++ +LT +++K + + K KEKE+
Sbjct: 215 ARQKALDTIKKAGSS--LPKDEVKRLEKEVDELTKKFVKSAEDMCKSKEKEI 264
>DICTYBASE|DDB_G0268518 [details] [associations]
symbol:DDB_G0268518 "Ribosome-recycling factor,
mitochondrial" species:44689 "Dictyostelium discoideum" [GO:0006412
"translation" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR002661 dictyBase:DDB_G0268518
Pfam:PF01765 GO:GO:0006412 EMBL:AAFI02000003 eggNOG:COG0233
KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
RefSeq:XP_647294.1 ProteinModelPortal:Q55G90 STRING:Q55G90
EnsemblProtists:DDB0216552 GeneID:8616100 KEGG:ddi:DDB_G0268518
InParanoid:Q55G90 OMA:IKQVNTI ProtClustDB:CLSZ2846946
Uniprot:Q55G90
Length = 263
Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
Identities = 61/174 (35%), Positives = 103/174 (59%)
Query: 100 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQ 159
V ++ ++TI+ V ++R GR P +L++I VE + L +A I DS +L I
Sbjct: 91 VSSQGDKTIEYVSRELGNIRFGRVGPELLERINVETPSGNLLLPHMAMITIKDSLTLNIT 150
Query: 160 PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAV 219
YD S L ++E+A+ +S LG+ P IR++LP+ T + R++L K V +E+ KV++
Sbjct: 151 LYDSSLLSNVERALTNSGLGLNPQTFDTTIRVSLPKPTQDLRQKLIKQVNTISEDAKVSI 210
Query: 220 RNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
R R+D + + K KL++D+ K L ++QK+TD+Y+K I I + K KE+
Sbjct: 211 RRHRKDGMD----ILKRYKLTKDDEKTLEKNIQKITDDYIKSITKITETKLKEI 260
>UNIPROTKB|Q96E11 [details] [associations]
symbol:MRRF "Ribosome-recycling factor, mitochondrial"
species:9606 "Homo sapiens" [GO:0006412 "translation" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0032790 "ribosome
disassembly" evidence=IDA] InterPro:IPR002661 Pfam:PF01765
GO:GO:0005739 GO:GO:0006412 EMBL:CH471090 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0032790 EMBL:AL162424 eggNOG:COG0233
KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
CTD:92399 HOVERGEN:HBG061516 OrthoDB:EOG4QRH4V EMBL:AK291603
EMBL:AK298046 EMBL:AK291809 EMBL:AK292790 EMBL:AK300718
EMBL:AK316266 EMBL:BC013049 EMBL:BC053604 IPI:IPI00030596
IPI:IPI00061108 IPI:IPI00412392 IPI:IPI00514034 IPI:IPI00555800
IPI:IPI00556454 IPI:IPI00556600 RefSeq:NP_001166983.1
RefSeq:NP_620132.1 RefSeq:NP_954646.1 UniGene:Hs.368011
ProteinModelPortal:Q96E11 SMR:Q96E11 IntAct:Q96E11 STRING:Q96E11
PhosphoSite:Q96E11 DMDM:62901043 PaxDb:Q96E11 PRIDE:Q96E11
DNASU:92399 Ensembl:ENST00000297908 Ensembl:ENST00000344641
Ensembl:ENST00000373723 Ensembl:ENST00000373724
Ensembl:ENST00000373727 Ensembl:ENST00000373728
Ensembl:ENST00000373729 Ensembl:ENST00000373730
Ensembl:ENST00000394315 Ensembl:ENST00000441707
Ensembl:ENST00000467864 Ensembl:ENST00000470366
Ensembl:ENST00000489572 Ensembl:ENST00000546115 GeneID:92399
KEGG:hsa:92399 UCSC:uc010mwa.3 UCSC:uc011lyq.2 UCSC:uc022bmy.1
GeneCards:GC09P125026 HGNC:HGNC:7234 MIM:604602 neXtProt:NX_Q96E11
PharmGKB:PA31029 InParanoid:Q96E11 OMA:VMVEYYG PhylomeDB:Q96E11
GenomeRNAi:92399 NextBio:77750 Bgee:Q96E11 Genevestigator:Q96E11
GermOnline:ENSG00000148187 Uniprot:Q96E11
Length = 262
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 51/179 (28%), Positives = 97/179 (54%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V M+ I+ ++ NFN R++P LDKI V ++L I+QI+ +L+
Sbjct: 87 EVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSPQLILV 146
Query: 159 Q--PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
+ + + +I KAI S + + P +G +IR+ +PQ+T E R+ L K+ + + K
Sbjct: 147 NMASFPECTAAAI-KAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNTNKAK 205
Query: 217 VAVRNIRRDALKAYEKLQKEKK-LSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
++R +R +++ KL+K K +SED ++ + + ++ D+ + ++D K KELL
Sbjct: 206 DSLRKVRTNSMN---KLKKSKDTVSEDTIRLIEKQISQMADDTVAELDRHLAVKTKELL 261
>UNIPROTKB|E1BQ58 [details] [associations]
symbol:MRRF "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006412 "translation" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR002661 InterPro:IPR016000
Pfam:PF01765 GO:GO:0005739 GO:GO:0006412 Gene3D:3.30.1360.40
InterPro:IPR024946 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 OMA:TREHRES CTD:92399
GeneTree:ENSGT00390000005084 PANTHER:PTHR20982:SF4
EMBL:AADN02026362 IPI:IPI00572512 RefSeq:XP_003642346.1
RefSeq:XP_415395.1 UniGene:Gga.7262 Ensembl:ENSGALT00000002038
GeneID:417110 KEGG:gga:417110 NextBio:20820466 Uniprot:E1BQ58
Length = 259
Score = 186 (70.5 bits), Expect = 7.3e-17, Sum P(2) = 7.3e-17
Identities = 45/173 (26%), Positives = 89/173 (51%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQ--PY 161
M+ ++ ++ +FN R++ LD I V L + QI+ +++ +
Sbjct: 89 MQAVVEALKEDFNRNLNVRTSQGALDHIIVTTKDGKFPLNQLGQISQKSPQLIVVNMTSF 148
Query: 162 DKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRN 221
+S+ ++ KAI S + + P DG +IR+ +P++T E R+ L+K+ + + K A+R
Sbjct: 149 PESTAAAM-KAIRESGMNLNPEVDGTLIRVPVPKVTREHRESLAKLAKQSTNKSKEALRK 207
Query: 222 IRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
+R ++ +K + K+SED + L +Q++ D ++D + K KELL
Sbjct: 208 VRSKSVNQVKKFKS--KVSEDTIWLLEKQIQQMADSAAAEMDKLLAAKTKELL 258
Score = 40 (19.1 bits), Expect = 7.3e-17, Sum P(2) = 7.3e-17
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 4 HFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRA 36
H SS +R QL P +C L D C A
Sbjct: 16 HCSSLAVVR---QLPQPPARCTPLLLDGCRHCA 45
>UNIPROTKB|J9P265 [details] [associations]
symbol:MRRF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006412 "translation" evidence=IEA]
InterPro:IPR002661 Pfam:PF01765 GO:GO:0006412 Gene3D:3.30.1360.40
InterPro:IPR024946 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 OMA:TREHRES CTD:92399
GeneTree:ENSGT00390000005084 EMBL:AAEX03006907 RefSeq:XP_537859.2
ProteinModelPortal:J9P265 Ensembl:ENSCAFT00000043300 GeneID:480739
KEGG:cfa:480739 Uniprot:J9P265
Length = 262
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 49/179 (27%), Positives = 98/179 (54%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V M+ ++ ++ NFN + R++P LD+I V ++L I QI+ +L+
Sbjct: 87 EVDEEMKSVMEALKDNFNKTISIRTSPGSLDRITVVTANGKLALNQIGQISMKSPHLILV 146
Query: 159 Q--PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
+ + + +I KAI S + + P +G +IR+ +P++T E R+ + K+ + + K
Sbjct: 147 NMASFPECTAAAI-KAIRESGMNLNPEVEGTLIRVPIPKVTREHREMMVKLAKQNTNKAK 205
Query: 217 VAVRNIRRDALKAYEKLQKEK-KLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
++R +R +A+ KL+K K K+SED ++ + + ++ D+ + ++D K KELL
Sbjct: 206 DSLRKVRTNAMN---KLKKSKDKVSEDTIRLIEKQISQMADDTVAELDRHLAVKTKELL 261
>UNIPROTKB|F1SLQ7 [details] [associations]
symbol:LOC100515005 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR002661 Pfam:PF01765
GO:GO:0005739 GO:GO:0006412 Gene3D:3.30.1360.40 InterPro:IPR024946
KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
OMA:TREHRES GeneTree:ENSGT00390000005084 EMBL:CU041257
RefSeq:XP_003480647.1 Ensembl:ENSSSCT00000006083 GeneID:100515005
KEGG:ssc:100515005 Uniprot:F1SLQ7
Length = 262
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 50/179 (27%), Positives = 97/179 (54%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V M+ I+ ++ NFN R++P LD+I V ++L I QI+ +L+
Sbjct: 87 EVDEEMKSVIEALKDNFNKTVNIRTSPGSLDQITVVTADGKLALNQIGQISMKSPQLILV 146
Query: 159 Q--PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
+ + + +I KAI S + + P+ +G +IR+ +P++T E R+ L K+ + + K
Sbjct: 147 NMASFPECTAAAI-KAIRESGMNLNPDVEGTLIRVPIPKVTREHREMLVKLAKQNTNKAK 205
Query: 217 VAVRNIRRDALKAYEKLQKEK-KLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
++R +R +A+ KL+K K K SED ++ + + ++ D+ + +++ K KELL
Sbjct: 206 ESLRKVRTNAMN---KLKKSKDKASEDTLRLIEKQISQMADDTVAELERHLAVKTKELL 261
>MGI|MGI:1915121 [details] [associations]
symbol:Mrrf "mitochondrial ribosome recycling factor"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0006412
"translation" evidence=IEA] [GO:0032790 "ribosome disassembly"
evidence=ISO] InterPro:IPR002661 Pfam:PF01765 MGI:MGI:1915121
GO:GO:0005739 GO:GO:0006412 Gene3D:3.30.1360.40 InterPro:IPR024946
eggNOG:COG0233 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 OMA:TREHRES CTD:92399 HOGENOM:HOG000007351
HOVERGEN:HBG061516 OrthoDB:EOG4QRH4V GeneTree:ENSGT00390000005084
EMBL:AK010018 EMBL:AK032371 EMBL:BX293557 EMBL:BC019787
IPI:IPI00109501 RefSeq:NP_080698.1 UniGene:Mm.378232 PDB:1WIH
PDBsum:1WIH ProteinModelPortal:Q9D6S7 SMR:Q9D6S7 STRING:Q9D6S7
PaxDb:Q9D6S7 PRIDE:Q9D6S7 Ensembl:ENSMUST00000028250 GeneID:67871
KEGG:mmu:67871 UCSC:uc008jlj.2 InParanoid:B1B055
EvolutionaryTrace:Q9D6S7 NextBio:325787 Bgee:Q9D6S7 CleanEx:MM_MRRF
Genevestigator:Q9D6S7 GermOnline:ENSMUSG00000026887 Uniprot:Q9D6S7
Length = 262
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 51/179 (28%), Positives = 93/179 (51%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V M+ ++ ++ NFN R+ P LD I V V+L I QI+ +L+
Sbjct: 87 EVDEDMKSVVEALKDNFNKTLNIRTAPGSLDHITVVTADGKVALNQIGQISMKSPQVILV 146
Query: 159 Q--PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
+ + + +I KAI S + + P +G +IR+ +P++T E R+ L K+ + + K
Sbjct: 147 NMASFPECTAAAI-KAIRESGMNLNPEVEGTLIRVPIPKVTREHREMLVKLAKQNTNKAK 205
Query: 217 VAVRNIRRDALKAYEKLQKEK-KLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
+R +R +A+ KL+K K K SED ++ + + ++ D+ + ++D K KELL
Sbjct: 206 ENLRKVRTNAMN---KLKKSKDKTSEDTIRLIEKQISQMADDTVAELDQHLAAKTKELL 261
>UNIPROTKB|Q0VCQ4 [details] [associations]
symbol:MRRF "Ribosome-recycling factor, mitochondrial"
species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR002661
Pfam:PF01765 GO:GO:0005739 GO:GO:0006412 Gene3D:3.30.1360.40
InterPro:IPR024946 eggNOG:COG0233 KO:K02838 InterPro:IPR023584
SUPFAM:SSF55194 PANTHER:PTHR20982 EMBL:BC120054 IPI:IPI00714526
RefSeq:NP_001069775.1 UniGene:Bt.21335 ProteinModelPortal:Q0VCQ4
SMR:Q0VCQ4 STRING:Q0VCQ4 PRIDE:Q0VCQ4 GeneID:614013 KEGG:bta:614013
CTD:92399 HOGENOM:HOG000007351 HOVERGEN:HBG061516 InParanoid:Q0VCQ4
OrthoDB:EOG4QRH4V NextBio:20898894 Uniprot:Q0VCQ4
Length = 262
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 50/179 (27%), Positives = 95/179 (53%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V M+ I+ ++ NFN R++P LD I V + L I+QI+ +L+
Sbjct: 87 EVDEEMKSVIEALKDNFNKTVNIRTSPGALDNITVVTADGKLPLNQISQISMKSPQLILV 146
Query: 159 Q--PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
+ + + +I KAI S + + P +G +IR+ +P++T E R+ L K+ + + K
Sbjct: 147 NMASFPECTAAAI-KAIRESGMNLNPEVEGTLIRVPIPKVTREHREMLVKLAKQNTNKAK 205
Query: 217 VAVRNIRRDALKAYEKLQKEK-KLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
++R +R +A+ K++K K K SED ++ + + ++ D+ + ++D K KELL
Sbjct: 206 DSLRKVRTNAIN---KVKKSKDKASEDTIRLIEKQISQMADDTVAELDRHLAVKTKELL 261
>RGD|1305897 [details] [associations]
symbol:Mrrf "mitochondrial ribosome recycling factor"
species:10116 "Rattus norvegicus" [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0006412 "translation" evidence=IEA]
[GO:0032790 "ribosome disassembly" evidence=ISO] InterPro:IPR002661
Pfam:PF01765 RGD:1305897 GO:GO:0005739 GO:GO:0006412
Gene3D:3.30.1360.40 InterPro:IPR024946 eggNOG:COG0233 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982 OMA:TREHRES
CTD:92399 HOGENOM:HOG000007351 HOVERGEN:HBG061516 OrthoDB:EOG4QRH4V
GeneTree:ENSGT00390000005084 EMBL:BC085779 IPI:IPI00372124
RefSeq:NP_001008355.1 UniGene:Rn.105234 ProteinModelPortal:Q5RKI9
SMR:Q5RKI9 STRING:Q5RKI9 PhosphoSite:Q5RKI9 PRIDE:Q5RKI9
Ensembl:ENSRNOT00000033047 GeneID:311903 KEGG:rno:311903
UCSC:RGD:1305897 InParanoid:Q5RKI9 NextBio:664438
Genevestigator:Q5RKI9 GermOnline:ENSRNOG00000025997 Uniprot:Q5RKI9
Length = 262
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 50/179 (27%), Positives = 93/179 (51%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V M+ ++ ++ NFN R+ P LD I V ++L I QI+ +L+
Sbjct: 87 EVDEDMKSVMEALKDNFNKTLNIRTAPGSLDHITVVTADGKLALNQIGQISMKSPQLILV 146
Query: 159 Q--PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
+ + + +I KAI S + + P +G +IR+ +P++T E R+ L K+ + + K
Sbjct: 147 NMASFPECTAAAI-KAIRESGMNLNPEVEGTLIRVPIPKVTREHREMLVKLAKQNTNKAK 205
Query: 217 VAVRNIRRDALKAYEKLQKEK-KLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
+R +R +A+ KL+K K K SED ++ + + ++ D+ + ++D K KELL
Sbjct: 206 ENLRKVRTNAMN---KLKKSKDKTSEDTIRLIEKQISQMADDTVAELDRHLAAKTKELL 261
>ZFIN|ZDB-GENE-040704-12 [details] [associations]
symbol:mrrf "mitochondrial ribosome recycling
factor" species:7955 "Danio rerio" [GO:0006412 "translation"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR002661
InterPro:IPR016000 Pfam:PF01765 ZFIN:ZDB-GENE-040704-12
GO:GO:0005739 GO:GO:0006412 Gene3D:3.30.1360.40 InterPro:IPR024946
eggNOG:COG0233 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 CTD:92399 HOGENOM:HOG000007351 HOVERGEN:HBG061516
OrthoDB:EOG4QRH4V PANTHER:PTHR20982:SF4 EMBL:BC074048
IPI:IPI00513547 RefSeq:NP_001002174.1 UniGene:Dr.84906
ProteinModelPortal:Q6GMJ7 SMR:Q6GMJ7 STRING:Q6GMJ7 GeneID:431721
KEGG:dre:431721 InParanoid:Q6GMJ7 NextBio:20830957
ArrayExpress:Q6GMJ7 Uniprot:Q6GMJ7
Length = 257
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 45/177 (25%), Positives = 92/177 (51%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+VK M + ++ +F+ + R++P LD I V L + QI+ L++
Sbjct: 82 EVKEDMAAVLAALKDDFSRNLSVRTSPGALDHITVTTKDGKFPLNQLGQISMKSPQLLVV 141
Query: 159 QPYD-KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
++ ++ +A+ S +G+ P +G +IR+ +P++T E R+ L K+ + + + K
Sbjct: 142 NMTGFPEAMVAVTRALRESSMGLNPEVEGTIIRVPVPKVTREHRENLVKLAKQFSNKSKD 201
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
++R +R +A+ +K K+ +S+D + + +Q++TD + ID K KELL
Sbjct: 202 SLRRVRSNAISQVKK-SKDA-VSDDTIHLIEKQIQQMTDSFTADIDKQLATKTKELL 256
>FB|FBgn0035980 [details] [associations]
symbol:CG4447 species:7227 "Drosophila melanogaster"
[GO:0006412 "translation" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] InterPro:IPR002661 InterPro:IPR016000 Pfam:PF01765
GO:GO:0005739 GO:GO:0006412 Gene3D:3.30.1360.40 InterPro:IPR024946
eggNOG:COG0233 InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
EMBL:AY069172 ProteinModelPortal:Q8T0M6 SMR:Q8T0M6 STRING:Q8T0M6
PaxDb:Q8T0M6 PRIDE:Q8T0M6 FlyBase:FBgn0035980 InParanoid:Q8T0M6
OrthoDB:EOG4H9W2V ArrayExpress:Q8T0M6 Bgee:Q8T0M6
PANTHER:PTHR20982:SF4 Uniprot:Q8T0M6
Length = 254
Score = 172 (65.6 bits), Expect = 7.6e-12, P = 7.6e-12
Identities = 37/176 (21%), Positives = 92/176 (52%)
Query: 100 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQ 159
+ ++M++++ ++ +F + S +D + ++ G L+ +AQI+ + ++++
Sbjct: 80 LNSQMQKSVMQMKEDFVKHLSLPSTSGAIDTLRIKVDGQEHELQELAQISRKNPKTIIVN 139
Query: 160 PYD-KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
++ + KAI S + + P DG + + +P++T E R+ LSK + + A
Sbjct: 140 MIGFPQTIPDVLKAIEKSGMNLNPQQDGTTLFIPIPKVTKEHRENLSKNAKALFVKYRDA 199
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
+R ++ + ++ KL+K+ +L +D+ + + + D ++ + D + K+KELL
Sbjct: 200 IRGVQNEHIR---KLKKQPELGKDDAFAAQAQVTAIADRFISEADKLLASKQKELL 252
>SGD|S000001080 [details] [associations]
symbol:RRF1 "Mitochondrial ribosome recycling factor"
species:4932 "Saccharomyces cerevisiae" [GO:0006412 "translation"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA;IDA]
[GO:0032543 "mitochondrial translation" evidence=IMP] [GO:0003747
"translation release factor activity" evidence=ISO]
InterPro:IPR002661 InterPro:IPR015999 SGD:S000001080 Pfam:PF01765
GO:GO:0005739 EMBL:BK006934 EMBL:U00062 GO:GO:0032543 GO:GO:0003747
eggNOG:COG0233 KO:K02838 OrthoDB:EOG418FZ7 InterPro:IPR023584
SUPFAM:SSF55194 EMBL:AB016033 PIR:S46737 RefSeq:NP_011903.1
ProteinModelPortal:P38771 SMR:P38771 DIP:DIP-1693N IntAct:P38771
MINT:MINT-407253 STRING:P38771 PaxDb:P38771 EnsemblFungi:YHR038W
GeneID:856433 KEGG:sce:YHR038W CYGD:YHR038w HOGENOM:HOG000094410
OMA:PNNDGEV NextBio:982027 Genevestigator:P38771 GermOnline:YHR038W
PANTHER:PTHR20982 PANTHER:PTHR20982:SF1 Uniprot:P38771
Length = 230
Score = 163 (62.4 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 43/184 (23%), Positives = 98/184 (53%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
+ + ++T+++ + N ++ G NP + + + + + IA + ++LLI
Sbjct: 56 ETQFKKTLEIQKQKMNEIKQGNFNPKVFNSL---VFKNNRKFTDIATTSLKGKNALLITV 112
Query: 161 YDKSSLKSIEKAIVSSDLGMTP----NNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
+D +K++ +++++L +TP NND + ++++LP T+E R +++K + + EE K
Sbjct: 113 FDPKDVKTVISGVLAANLNLTPERVPNNDLQ-LKVSLPPPTTESRLKVAKDLKRVFEEYK 171
Query: 217 VA-----VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEK 271
+ + IR LK ++ +K+ D V+ DL+KL +Y+ K+ +++ EK
Sbjct: 172 QSSLKDSLGTIRGSILKEFKSFKKD-----DAVRKAERDLEKLHKDYVNKLHDQFQKVEK 226
Query: 272 ELLK 275
++K
Sbjct: 227 SIVK 230
>UNIPROTKB|Q4TT42 [details] [associations]
symbol:MRRFP1 "Protein MRRFP1" species:9606 "Homo sapiens"
[GO:0006412 "translation" evidence=IEA] InterPro:IPR002661
Pfam:PF01765 GO:GO:0006412 Gene3D:3.30.1360.40 InterPro:IPR024946
EMBL:Z83848 InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
HOGENOM:HOG000007351 HOVERGEN:HBG061516 OrthoDB:EOG4QRH4V
IPI:IPI00176976 SMR:Q4TT42 STRING:Q4TT42 Ensembl:ENST00000435941
HGNC:HGNC:35238 OMA:IREHREM Uniprot:Q4TT42
Length = 262
Score = 165 (63.1 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 51/179 (28%), Positives = 90/179 (50%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V M+ I+ + NFN ++P LDKI V ++L I QI+ +L+
Sbjct: 87 EVNEEMKSVIEARKDNFNKTLNIGTSPGSLDKIAVVTADGKLALNQIRQISVKLPQLILV 146
Query: 159 Q--PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
+ + ++ +I KAI S + + P +G +IR+ +PQ+ E R+ L K+ AKQ K
Sbjct: 147 NMASFPEFTVAAI-KAIRESGMNLNPEVEGTLIRVPIPQVIREHREMLVKL-AKQ-NTNK 203
Query: 217 VAVRNIRRDALKAYEKLQKEKK-LSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
A ++R+ A KL+K K +SE ++ + ++ D+ + ++ K KELL
Sbjct: 204 -ATYSLRKVCTNAMNKLKKSKDTVSEGTIRLTEKQISQMADDTVAELYRHLAVKTKELL 261
>CGD|CAL0005804 [details] [associations]
symbol:orf19.477 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0032543 "mitochondrial translation" evidence=IEA]
InterPro:IPR002661 InterPro:IPR015999 CGD:CAL0005804 Pfam:PF01765
GO:GO:0005739 GO:GO:0006412 EMBL:AACQ01000055 EMBL:AACQ01000054
eggNOG:COG0233 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
HOGENOM:HOG000094410 PANTHER:PTHR20982 PANTHER:PTHR20982:SF1
RefSeq:XP_717340.1 RefSeq:XP_717430.1 STRING:Q5A6S7 GeneID:3640880
GeneID:3640960 KEGG:cal:CaO19.477 KEGG:cal:CaO19.8108
Uniprot:Q5A6S7
Length = 261
Score = 142 (55.0 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 50/190 (26%), Positives = 87/190 (45%)
Query: 103 RMERTIDMVRTNFNSVRT----GRSNPAMLDKIEVEY--YGSP--VSLKSIAQINTPDSS 154
++ D V + FN T G+ NP + D +EV +G V S+AQ +
Sbjct: 75 KVTSNFDNVLSKFNKAATDIKLGKLNPKIFDNLEVNIGNHGHEELVPFTSVAQTSVK-GR 133
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMT----PNNDGEVIRLTLPQLTSERR----KELSK 206
+ +I +D K + +I+ S L M+ P N + I++ +P +T+E + K+L +
Sbjct: 134 NFIINLFDAGYGKHVINSIIGSGLNMSGTIDPTNKFQ-IKVPIPNITTETKQENIKQLKE 192
Query: 207 VVAKQAEEGKVAVRN-IRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 265
+ K N +R +A ++ K K+S D+ L L+ L Y+ K+
Sbjct: 193 IFENLKNNHKSNSLNYVRSEARNKFQSSLKHNKIS-DSQHQLLKKLETLHKTYVDKLTDA 251
Query: 266 YKQKEKELLK 275
+KQ EK +LK
Sbjct: 252 FKQAEKSILK 261
>UNIPROTKB|Q5A6S7 [details] [associations]
symbol:RRF1 "Potential mitochondrial ribosome recycling
factor" species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR002661
InterPro:IPR015999 CGD:CAL0005804 Pfam:PF01765 GO:GO:0005739
GO:GO:0006412 EMBL:AACQ01000055 EMBL:AACQ01000054 eggNOG:COG0233
KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194 HOGENOM:HOG000094410
PANTHER:PTHR20982 PANTHER:PTHR20982:SF1 RefSeq:XP_717340.1
RefSeq:XP_717430.1 STRING:Q5A6S7 GeneID:3640880 GeneID:3640960
KEGG:cal:CaO19.477 KEGG:cal:CaO19.8108 Uniprot:Q5A6S7
Length = 261
Score = 142 (55.0 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 50/190 (26%), Positives = 87/190 (45%)
Query: 103 RMERTIDMVRTNFNSVRT----GRSNPAMLDKIEVEY--YGSP--VSLKSIAQINTPDSS 154
++ D V + FN T G+ NP + D +EV +G V S+AQ +
Sbjct: 75 KVTSNFDNVLSKFNKAATDIKLGKLNPKIFDNLEVNIGNHGHEELVPFTSVAQTSVK-GR 133
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMT----PNNDGEVIRLTLPQLTSERR----KELSK 206
+ +I +D K + +I+ S L M+ P N + I++ +P +T+E + K+L +
Sbjct: 134 NFIINLFDAGYGKHVINSIIGSGLNMSGTIDPTNKFQ-IKVPIPNITTETKQENIKQLKE 192
Query: 207 VVAKQAEEGKVAVRN-IRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 265
+ K N +R +A ++ K K+S D+ L L+ L Y+ K+
Sbjct: 193 IFENLKNNHKSNSLNYVRSEARNKFQSSLKHNKIS-DSQHQLLKKLETLHKTYVDKLTDA 251
Query: 266 YKQKEKELLK 275
+KQ EK +LK
Sbjct: 252 FKQAEKSILK 261
>ASPGD|ASPL0000049715 [details] [associations]
symbol:AN10205 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0032543 "mitochondrial
translation" evidence=IEA] InterPro:IPR002661 Pfam:PF01765
GO:GO:0006412 EMBL:BN001307 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 EnsemblFungi:CADANIAT00008013
HOGENOM:HOG000157011 OMA:AQVVPKG Uniprot:C8VLW3
Length = 255
Score = 128 (50.1 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 40/174 (22%), Positives = 85/174 (48%)
Query: 108 IDMVRTNFNSVRTG-RSNPAMLDKIEVEYY-GSPVS--LKSIAQINTPDSSSLLIQPYDK 163
+ ++ +RTG R P ++ + V+ G+ + L +AQ+ + + ++
Sbjct: 80 VSRLKDELTKLRTGGRLCPETIESLRVQLSKGTKETARLGDLAQVVPKGGRMVAVLVSEE 139
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGE---VIRLTLPQLTSERRKELSKVVAKQAEEGKVA-V 219
S +K I AI++S+L +TP D + + +P T E R + + + AK A E + V
Sbjct: 140 SYMKPISSAILASNLSLTPQQDPHNALQLNIPIPPPTKESRDQ-TVLAAKAAMERAASNV 198
Query: 220 RNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
R R K +++ K+K D+ + ++KLT++ K++ +++ +K +
Sbjct: 199 RETRGIVHKRLQEMIKKKIARPDDARKAQDKMEKLTEKGQKEVKDLFEVAKKAM 252
>UNIPROTKB|G3X7D8 [details] [associations]
symbol:MRRF "Ribosome-recycling factor, mitochondrial"
species:9913 "Bos taurus" [GO:0006412 "translation" evidence=IEA]
InterPro:IPR002661 Pfam:PF01765 GO:GO:0006412 InterPro:IPR023584
SUPFAM:SSF55194 PANTHER:PTHR20982 GeneTree:ENSGT00390000005084
EMBL:DAAA02032027 Ensembl:ENSBTAT00000024516 Uniprot:G3X7D8
Length = 84
Score = 108 (43.1 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 25/86 (29%), Positives = 49/86 (56%)
Query: 190 RLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEK-KLSEDNVKDLS 248
R+ +P +T E R+ L K+ + + K ++R +R +A+ K++K K K SED ++ +
Sbjct: 1 RVPVPGVTREHREMLVKLAKQNTNKAKDSLRKVRTNAIN---KVKKSKDKASEDTIRLIE 57
Query: 249 SDLQKLTDEYMKKIDSIYKQKEKELL 274
+ ++ D+ + ++D K KELL
Sbjct: 58 KQISQMADDTVAELDRHLAVKTKELL 83
>POMBASE|SPBC1709.09 [details] [associations]
symbol:rrf1 "mitochondrial translation termination
factor Rrf1" species:4896 "Schizosaccharomyces pombe" [GO:0005739
"mitochondrion" evidence=IGI;IDA] [GO:0008079 "translation
termination factor activity" evidence=ISS] [GO:0032790 "ribosome
disassembly" evidence=ISS] [GO:0070126 "mitochondrial translational
termination" evidence=IGI] Pfam:PF01765 PomBase:SPBC1709.09
GO:GO:0005739 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0032790
GO:GO:0008079 GO:GO:0070126 PIR:T39637 RefSeq:NP_595442.1
ProteinModelPortal:O74734 STRING:O74734 EnsemblFungi:SPBC1709.09.1
GeneID:2540194 KEGG:spo:SPBC1709.09 eggNOG:COG0233 KO:K02838
OrthoDB:EOG418FZ7 NextBio:20801326 InterPro:IPR023584
SUPFAM:SSF55194 Uniprot:O74734
Length = 244
Score = 120 (47.3 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 32/134 (23%), Positives = 66/134 (49%)
Query: 142 LKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNN-DGEVIRLTLPQLTSER 200
L+ IA ++ S ++I+P++ +K+I KAI S N + I + + T E
Sbjct: 111 LREIAAVSQKGSQQIIIRPFEDVDIKNILKAIEDSRYPFVANKLNASTIEVKPQRTTLES 170
Query: 201 RKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMK 260
R++L+KV+ A++ + + +R + K K +K K + D+ +++Q +
Sbjct: 171 RQQLAKVLEGYAKDSREQLSAMRTELKKEIAKNKKSKAWTSDDCYKAEAEMQTAFKNAIN 230
Query: 261 KIDSIYKQKEKELL 274
+DS K K+++
Sbjct: 231 LLDSGLKSALKKVI 244
>TAIR|locus:2061300 [details] [associations]
symbol:AT2G31410 "AT2G31410" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC007169
EMBL:AF360261 EMBL:AY051022 IPI:IPI00528592 PIR:D84720
RefSeq:NP_565723.1 UniGene:At.19710 IntAct:Q9SIC8 STRING:Q9SIC8
PaxDb:Q9SIC8 PRIDE:Q9SIC8 EnsemblPlants:AT2G31410.1 GeneID:817699
KEGG:ath:AT2G31410 TAIR:At2g31410 eggNOG:NOG250913
HOGENOM:HOG000239217 InParanoid:Q9SIC8 OMA:MASHLDF PhylomeDB:Q9SIC8
ProtClustDB:CLSN2688600 ArrayExpress:Q9SIC8 Genevestigator:Q9SIC8
Uniprot:Q9SIC8
Length = 199
Score = 109 (43.4 bits), Expect = 0.00037, P = 0.00037
Identities = 40/158 (25%), Positives = 78/158 (49%)
Query: 126 AMLDKIEVEYYGSPVSLK--SIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPN 183
A+ D+ ++ G+P + K ++A PD L ++ + + VS P
Sbjct: 33 AIADEASMDIDGAPPAAKRSAVASSENPDKPIALA--VERPTYDGVIAGKVSGRNWKQPR 90
Query: 184 ---NDGEVIRLTLPQLTS-ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKL 239
+ G ++ P L +R++E+ K ++ E K +R+ + + K E+ +K KK
Sbjct: 91 THRSSGRFVKNRKPDLEEMKRQREIKKAYKERVNELKEEIRSNKVEKRKKKEEREKRKK- 149
Query: 240 SEDNVKDLSSDLQKLTD-EYMKKIDSIYKQKEKELLKV 276
+NV + LQK+T+ + +KKI S+ K++ K+L K+
Sbjct: 150 --ENVLRTGTKLQKITNPKTLKKI-SMSKKQRKQLKKI 184
>WB|WBGene00020625 [details] [associations]
symbol:mrrf-1 species:6239 "Caenorhabditis elegans"
[GO:0006412 "translation" evidence=IEA] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] InterPro:IPR002661
Pfam:PF01765 GO:GO:0005739 GO:GO:0040010 GO:GO:0006412
Gene3D:3.30.1360.40 InterPro:IPR024946 EMBL:FO080916 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982 PIR:T29207
RefSeq:NP_491262.2 ProteinModelPortal:P91478 SMR:P91478
STRING:P91478 PaxDb:P91478 EnsemblMetazoa:T20F5.3.1
EnsemblMetazoa:T20F5.3.2 GeneID:171976 KEGG:cel:CELE_T20F5.3
UCSC:T20F5.3 CTD:171976 WormBase:T20F5.3 eggNOG:NOG287229
GeneTree:ENSGT00390000005084 InParanoid:P91478 OMA:HAAEQRG
NextBio:873493 InterPro:IPR016001 PANTHER:PTHR20982:SF2
Uniprot:P91478
Length = 238
Score = 110 (43.8 bits), Expect = 0.00049, P = 0.00049
Identities = 35/141 (24%), Positives = 65/141 (46%)
Query: 137 GSPVSLKSIAQINTPDSSSLLIQPYDK-SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQ 195
G L IA++ ++I D S++K+ + AI S L +TP +G V+ + +P
Sbjct: 98 GKDKPLSMIARVTLKSPLMIMINFQDNPSAIKAAKLAIQKSTLNVTPQQEGAVLYVNVPP 157
Query: 196 LTSERRKEL-SKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKL 254
++ ERR+++ S + E K A+ I K+ +K E D K L +
Sbjct: 158 MSKERREKMASDAKGRILNEYKKAINEIYS---KSDKKSSNEFSTRPDEAKKTREALLNM 214
Query: 255 TDEYMKKIDSIYKQKEKELLK 275
++ + +++ K+LLK
Sbjct: 215 KHAAEQRGGLLIEERRKQLLK 235
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.127 0.343 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 276 263 0.00091 114 3 10 23 0.38 34
32 0.49 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 36
No. of states in DFA: 614 (65 KB)
Total size of DFA: 244 KB (2133 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 37.88u 0.16s 38.04t Elapsed: 00:00:02
Total cpu time: 37.89u 0.16s 38.05t Elapsed: 00:00:02
Start: Sat May 11 00:31:04 2013 End: Sat May 11 00:31:06 2013