BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023857
(276 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|118489544|gb|ABK96574.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 286
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 207/273 (75%), Positives = 233/273 (85%), Gaps = 7/273 (2%)
Query: 11 MRSIFQLKSNPPKCLLFLPDSCHR---RAETATCRASSVSVRQWSSAANYSRL----VKL 63
+RSIFQ NPPK LL L S HR RA+ + SV WSS+ANYS L KL
Sbjct: 14 LRSIFQPNPNPPKALLSLTGSFHRGPHRAKVGYNSIGAASVSLWSSSANYSSLRNGSSKL 73
Query: 64 SNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRS 123
S KP+ V++L R GVVR ATIEEIEAEKS IE D K RME+TID +RTNFNSVRTGR+
Sbjct: 74 SGKPVAVKRLLQNRRGVVRNATIEEIEAEKSLIEDDAKGRMEKTIDTMRTNFNSVRTGRA 133
Query: 124 NPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPN 183
NP+MLDKIEVEYYG+PVSLKSIAQI+TPD+SSLL+QPYDKSSLK+IEKAIVSSDLG+TPN
Sbjct: 134 NPSMLDKIEVEYYGTPVSLKSIAQISTPDASSLLVQPYDKSSLKAIEKAIVSSDLGLTPN 193
Query: 184 NDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDN 243
NDGEVIR+++PQLTSERRKELSK+VAK AEEGKVA+RNIRRDALKAYEKL+KEKKLSEDN
Sbjct: 194 NDGEVIRMSIPQLTSERRKELSKMVAKLAEEGKVALRNIRRDALKAYEKLEKEKKLSEDN 253
Query: 244 VKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VKDLSSDLQKLTDEYMKK+D+I+KQKEKELLKV
Sbjct: 254 VKDLSSDLQKLTDEYMKKLDNIFKQKEKELLKV 286
>gi|224066503|ref|XP_002302112.1| predicted protein [Populus trichocarpa]
gi|222843838|gb|EEE81385.1| predicted protein [Populus trichocarpa]
Length = 286
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/273 (75%), Positives = 232/273 (84%), Gaps = 7/273 (2%)
Query: 11 MRSIFQLKSNPPKCLLFLPDSCHR---RAETATCRASSVSVRQWSSAANYSRL----VKL 63
+RSIFQ NPPK LL L S HR RA+ + SV WSS+ANYS L KL
Sbjct: 14 LRSIFQPNPNPPKALLSLTGSFHRGPHRAKVCYNSIGATSVSLWSSSANYSSLRNGSTKL 73
Query: 64 SNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRS 123
S KP+ V++L R GVVR ATIEEIEAEKS IE D K RME+TID +R NFNSVRTGR+
Sbjct: 74 SGKPVAVKRLLQNRRGVVRNATIEEIEAEKSLIEDDAKGRMEKTIDTMRANFNSVRTGRA 133
Query: 124 NPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPN 183
NP+MLDKIEVEYYG+PVSLKSIAQI+TPD+SSLL+QPYDKSSLK+IEKAIVSSDLG+TPN
Sbjct: 134 NPSMLDKIEVEYYGTPVSLKSIAQISTPDASSLLVQPYDKSSLKAIEKAIVSSDLGLTPN 193
Query: 184 NDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDN 243
NDGEVIR+++PQLTSERRKELSK+VAK AEEGKVA+RNIRRDALKAYEKL+KEKKLSEDN
Sbjct: 194 NDGEVIRMSIPQLTSERRKELSKMVAKLAEEGKVALRNIRRDALKAYEKLEKEKKLSEDN 253
Query: 244 VKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VKDLSSDLQKLTDEYMKK+++I+KQKEKELLKV
Sbjct: 254 VKDLSSDLQKLTDEYMKKLENIFKQKEKELLKV 286
>gi|449444671|ref|XP_004140097.1| PREDICTED: ribosome-recycling factor, chloroplastic-like [Cucumis
sativus]
Length = 278
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 210/281 (74%), Positives = 234/281 (83%), Gaps = 8/281 (2%)
Query: 1 MATHFSSTGPMR-SIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSR 59
MAT FS+T +R S+FQ + PPK LL L D + C + + + W SA+NY R
Sbjct: 1 MATPFSATASIRRSLFQ--NPPPKSLLSLRD-YNGGLNCVKCGSITAHLCSWKSASNYVR 57
Query: 60 L----VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNF 115
L + +S + V + R VVR ATIEEIEAEK+ IEKDVKARME+TID VR+NF
Sbjct: 58 LNRQALVISTQLSVSGNVFKNRRLVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNF 117
Query: 116 NSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVS 175
NS+RTGRSNPAMLDKIEVEYYGSPVSLKSIAQI+TPD+SSLL+QPYDKSSLKSIEKAIV+
Sbjct: 118 NSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVN 177
Query: 176 SDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQK 235
SDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKL+K
Sbjct: 178 SDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEK 237
Query: 236 EKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
EKKLSEDNVKDLSSDLQKLTD+YMKKID +YKQKEKELLKV
Sbjct: 238 EKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 278
>gi|296085196|emb|CBI28691.3| unnamed protein product [Vitis vinifera]
Length = 274
Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust.
Identities = 201/280 (71%), Positives = 229/280 (81%), Gaps = 10/280 (3%)
Query: 1 MATHFSSTGPMRSIFQLKS-NPPKCLLFLP--DSCHRRAETA-TCRASSVSVRQWSSAAN 56
MA FS P+R+IFQ KS +P C P + CH A T R+++ VR A
Sbjct: 1 MAMTFSPATPVRTIFQRKSLSPGGCYCRGPGYEKCHLNIGIAFTLRSAANYVRLGDGARE 60
Query: 57 YSRLVKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFN 116
YS K V ++ KR G+ RCATIEEIEAEKSSIEKDVK RME+TI+ VRTNFN
Sbjct: 61 YS------GKLFVAKRNFQKRTGIFRCATIEEIEAEKSSIEKDVKERMEKTIETVRTNFN 114
Query: 117 SVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSS 176
S+RTGR+NPA+LD++EVEYYG+PVSLKSIAQI+TPDS+SLL+QPYDKSSLK IEKAIVSS
Sbjct: 115 SIRTGRANPAILDRVEVEYYGTPVSLKSIAQISTPDSASLLVQPYDKSSLKVIEKAIVSS 174
Query: 177 DLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKE 236
DLG+TPNNDGEVIRL+LPQLTSERRKELSKVVAKQ EEGKVA+RNIRRDALKAYEKL+K+
Sbjct: 175 DLGLTPNNDGEVIRLSLPQLTSERRKELSKVVAKQTEEGKVALRNIRRDALKAYEKLEKD 234
Query: 237 KKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
KKLSEDNVKDLSSDLQKL DEYMKKI++IYKQKEKELLKV
Sbjct: 235 KKLSEDNVKDLSSDLQKLIDEYMKKIETIYKQKEKELLKV 274
>gi|225437014|ref|XP_002272648.1| PREDICTED: ribosome-recycling factor, chloroplastic-like [Vitis
vinifera]
Length = 280
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 197/278 (70%), Positives = 229/278 (82%), Gaps = 6/278 (2%)
Query: 5 FSSTGPMRSIFQLKS-NPPKCLLFLP--DSCHRRAETA-TCRASSVSVRQWSSAANYSRL 60
FS P+R+IFQ KS +P C P + CH A T R+++ VR A YS
Sbjct: 3 FSPATPVRTIFQRKSLSPGGCYCRGPGYEKCHLNIGIAFTLRSAANYVRLGDGAREYSGK 62
Query: 61 VKLSNKPIVVRQLA--HKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSV 118
+ ++ + RQ+ + G+ RCATIEEIEAEKSSIEKDVK RME+TI+ VRTNFNS+
Sbjct: 63 LFVAKRNFQKRQVESYGYKTGIFRCATIEEIEAEKSSIEKDVKERMEKTIETVRTNFNSI 122
Query: 119 RTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDL 178
RTGR+NPA+LD++EVEYYG+PVSLKSIAQI+TPDS+SLL+QPYDKSSLK IEKAIVSSDL
Sbjct: 123 RTGRANPAILDRVEVEYYGTPVSLKSIAQISTPDSASLLVQPYDKSSLKVIEKAIVSSDL 182
Query: 179 GMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKK 238
G+TPNNDGEVIRL+LPQLTSERRKELSKVVAKQ EEGKVA+RNIRRDALKAYEKL+K+KK
Sbjct: 183 GLTPNNDGEVIRLSLPQLTSERRKELSKVVAKQTEEGKVALRNIRRDALKAYEKLEKDKK 242
Query: 239 LSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
LSEDNVKDLSSDLQKL DEYMKKI++IYKQKEKELLKV
Sbjct: 243 LSEDNVKDLSSDLQKLIDEYMKKIETIYKQKEKELLKV 280
>gi|356536011|ref|XP_003536534.1| PREDICTED: LOW QUALITY PROTEIN: ribosome-recycling factor,
chloroplastic-like [Glycine max]
Length = 256
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 193/275 (70%), Positives = 225/275 (81%), Gaps = 22/275 (8%)
Query: 2 ATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSRLV 61
+T FS T +RSI K NPPK LL L R ++S+A+Y+ L
Sbjct: 4 STSFSPTASVRSIIFQKQNPPKALLLLSQQ-----------------RSFASSASYATL- 45
Query: 62 KLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTG 121
KL +P+ L+ R +VR ATIEEIEAEK++IEKD K+RM+RTID VRTNF+S+RTG
Sbjct: 46 KLPRRPL----LSXGRTPLVRAATIEEIEAEKAAIEKDAKSRMDRTIDNVRTNFSSIRTG 101
Query: 122 RSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMT 181
R+NPAMLDKIEVEYYGSPVSLKSIAQI+TPD+SSLL+QPYDKSSLK+IEK IVSSDLGMT
Sbjct: 102 RANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKAIEKTIVSSDLGMT 161
Query: 182 PNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSE 241
PNNDGE I+L +PQLTS+RRKELSK+VAKQAEEGKVA+RNIRRDALKAY+KL+KEKKLSE
Sbjct: 162 PNNDGESIQLRIPQLTSDRRKELSKIVAKQAEEGKVALRNIRRDALKAYDKLEKEKKLSE 221
Query: 242 DNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
DNVKDLSSDLQKLTDEYMKK+D+I+KQKEKELL V
Sbjct: 222 DNVKDLSSDLQKLTDEYMKKVDTIFKQKEKELLTV 256
>gi|297821238|ref|XP_002878502.1| hypothetical protein ARALYDRAFT_907901 [Arabidopsis lyrata subsp.
lyrata]
gi|297324340|gb|EFH54761.1| hypothetical protein ARALYDRAFT_907901 [Arabidopsis lyrata subsp.
lyrata]
Length = 275
Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust.
Identities = 192/281 (68%), Positives = 226/281 (80%), Gaps = 11/281 (3%)
Query: 1 MATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCR-----ASSVSVRQWSSAA 55
MA FSS P + Q ++N K +L LPDSC R +A C A S+ + A
Sbjct: 1 MAASFSSIAPTTPVLQFRANYSKSILSLPDSCLRIISSARCPSARLIACSLKTEKLPLGA 60
Query: 56 NYSRLVKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNF 115
V LS P+V R L ++ V+R ATIEEIEAEKS+IE DVK++ME+TI+ +RT+F
Sbjct: 61 G----VNLSGGPVVKRSL--QKRLVIRSATIEEIEAEKSAIETDVKSKMEKTIETLRTSF 114
Query: 116 NSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVS 175
NS+RTGRSN AMLDKIEVEYYGSPVSLKSIAQI+TPD SSLL+QPYDKSSLK+IEKAIV+
Sbjct: 115 NSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLLQPYDKSSLKAIEKAIVN 174
Query: 176 SDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQK 235
SDLG+TPNNDG+VIRL+LP LTSERRKELSKVVAKQ+EEGKVA+RNIRRDALK+Y+KL+K
Sbjct: 175 SDLGVTPNNDGDVIRLSLPPLTSERRKELSKVVAKQSEEGKVALRNIRRDALKSYDKLEK 234
Query: 236 EKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
EKKLSEDNVKDLSSDLQKL D YMKKI+ +YKQKEKEL+KV
Sbjct: 235 EKKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQKEKELMKV 275
>gi|359806687|ref|NP_001241288.1| uncharacterized protein LOC100794560 [Glycine max]
gi|255638439|gb|ACU19529.1| unknown [Glycine max]
Length = 261
Score = 368 bits (945), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 192/282 (68%), Positives = 226/282 (80%), Gaps = 27/282 (9%)
Query: 1 MATHFSSTGPMRSI-FQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYS- 58
MAT FS T + SI FQ NPPK + R ++S+A+Y+
Sbjct: 1 MATSFSPTASVGSIIFQ---NPPKG--------------LLLLSQQQQQRSFASSASYAT 43
Query: 59 ----RLVKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTN 114
R LS +P+ L+ R +VR ATIEEIEAEK++IEKD K RM+RTID VRTN
Sbjct: 44 LKLPRAFALSPRPL----LSKGRTTLVRAATIEEIEAEKAAIEKDAKTRMDRTIDNVRTN 99
Query: 115 FNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIV 174
F+S+RTGR+NP+MLDKI+VEYYGSPVSLKSIAQI+TPD+SSLL+QPYDKSSLK+IEKAIV
Sbjct: 100 FSSIRTGRANPSMLDKIQVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKAIEKAIV 159
Query: 175 SSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQ 234
SSDLGMTPNNDGE+IRL++PQLTS+RRKELSK+VAKQAEEGKVA+RNIRRDALKAY+KL+
Sbjct: 160 SSDLGMTPNNDGELIRLSIPQLTSDRRKELSKIVAKQAEEGKVALRNIRRDALKAYDKLE 219
Query: 235 KEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
KEKKLSEDNVKDLSSDLQKLTDEYMKK+D+I+KQKEKELL V
Sbjct: 220 KEKKLSEDNVKDLSSDLQKLTDEYMKKVDTIFKQKEKELLTV 261
>gi|388499912|gb|AFK38022.1| unknown [Medicago truncatula]
Length = 262
Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 188/276 (68%), Positives = 226/276 (81%), Gaps = 14/276 (5%)
Query: 1 MATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSRL 60
MAT FSST P+RSIFQ PK LL S H + R+S+ + S + +S
Sbjct: 1 MATSFSSTTPLRSIFQNLPVVPKALL----SAH--SSFTIKRSSTYVTLKLSGSGRHS-- 52
Query: 61 VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRT 120
LS + + H R G VR ATIEEIEAEK+SIE DVK+RMERT+D V+TNF+S+RT
Sbjct: 53 --LSKGLLTL----HTRKGFVRAATIEEIEAEKASIENDVKSRMERTLDNVKTNFSSIRT 106
Query: 121 GRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGM 180
GR+ P+MLDKIEVEYYGSPVSLK+IAQI+TPD+SSLL+ PYDKSSLK+IEKAIV+SD+GM
Sbjct: 107 GRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASSLLVSPYDKSSLKAIEKAIVNSDVGM 166
Query: 181 TPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLS 240
TPNNDGEVIRL++PQLTS+RRKEL+K+V+KQ EEGKVA+RNIRRDALKAYEKL+K+KKLS
Sbjct: 167 TPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEGKVALRNIRRDALKAYEKLEKDKKLS 226
Query: 241 EDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
EDNVKDLSSDLQKLTD+Y+KK+D++YKQKEKELL V
Sbjct: 227 EDNVKDLSSDLQKLTDDYIKKVDALYKQKEKELLTV 262
>gi|357440723|ref|XP_003590639.1| Ribosome-recycling factor [Medicago truncatula]
gi|217072182|gb|ACJ84451.1| unknown [Medicago truncatula]
gi|217072782|gb|ACJ84751.1| unknown [Medicago truncatula]
gi|355479687|gb|AES60890.1| Ribosome-recycling factor [Medicago truncatula]
Length = 262
Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 188/276 (68%), Positives = 226/276 (81%), Gaps = 14/276 (5%)
Query: 1 MATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSRL 60
MAT FSST P+RSIFQ PK LL S H + R+S+ + S + +S
Sbjct: 1 MATSFSSTTPLRSIFQNLPIVPKALL----SAH--SSFTIKRSSTYVTLKLSGSGRHS-- 52
Query: 61 VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRT 120
LS + + H R G VR ATIEEIEAEK+SIE DVK+RMERT+D V+TNF+S+RT
Sbjct: 53 --LSKGLLTL----HTRKGFVRAATIEEIEAEKASIENDVKSRMERTLDNVKTNFSSIRT 106
Query: 121 GRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGM 180
GR+ P+MLDKIEVEYYGSPVSLK+IAQI+TPD+SSLL+ PYDKSSLK+IEKAIV+SD+GM
Sbjct: 107 GRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASSLLVSPYDKSSLKAIEKAIVNSDVGM 166
Query: 181 TPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLS 240
TPNNDGEVIRL++PQLTS+RRKEL+K+V+KQ EEGKVA+RNIRRDALKAYEKL+K+KKLS
Sbjct: 167 TPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEGKVALRNIRRDALKAYEKLEKDKKLS 226
Query: 241 EDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
EDNVKDLSSDLQKLTD+Y+KK+D++YKQKEKELL V
Sbjct: 227 EDNVKDLSSDLQKLTDDYIKKVDALYKQKEKELLTV 262
>gi|18412657|ref|NP_567141.1| ribosome-recycling factor [Arabidopsis thaliana]
gi|22001953|sp|Q9M1X0.2|RRFC_ARATH RecName: Full=Ribosome-recycling factor, chloroplastic; Short=RRF;
AltName: Full=CpFrr; AltName: Full=RRFHCP; AltName:
Full=Ribosome-releasing factor, chloroplastic; Flags:
Precursor
gi|13926252|gb|AAK49599.1|AF372883_1 AT3g63190/F16M2_40 [Arabidopsis thaliana]
gi|15982709|gb|AAL09724.1| AT3g63190/F16M2_40 [Arabidopsis thaliana]
gi|20260166|gb|AAM12981.1| putative protein [Arabidopsis thaliana]
gi|27363350|gb|AAO11594.1| At3g63190/F16M2_40 [Arabidopsis thaliana]
gi|332646925|gb|AEE80446.1| ribosome-recycling factor [Arabidopsis thaliana]
Length = 275
Score = 365 bits (937), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 192/281 (68%), Positives = 228/281 (81%), Gaps = 11/281 (3%)
Query: 1 MATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSRL 60
MA FSST P + + ++N K LL LPDSC R +A S S R + + +L
Sbjct: 1 MAASFSSTAPTTPVLRFRANYSKPLLSLPDSCLRIISSAI----SPSTRLIACSFKTDKL 56
Query: 61 -----VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNF 115
V LS P+V R L ++ V+R ATIEEIEAEKS+IE DVK++ME+TI+ +RT+F
Sbjct: 57 PLGAGVNLSGGPVVKRSL--QKRLVIRSATIEEIEAEKSAIETDVKSKMEKTIETLRTSF 114
Query: 116 NSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVS 175
NS+RTGRSN AMLDKIEVEYYGSPVSLKSIAQI+TPD SSLL+QPYDKSSLK+IEKAIV+
Sbjct: 115 NSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLLQPYDKSSLKAIEKAIVN 174
Query: 176 SDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQK 235
SDLG+TPNNDG+VIRL+LP LTS+RRKELSKVVAKQ+EEGKVA+RNIRRDALK+Y+KL+K
Sbjct: 175 SDLGVTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQSEEGKVALRNIRRDALKSYDKLEK 234
Query: 236 EKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
EKKLSEDNVKDLSSDLQKL D YMKKI+ +YKQKEKEL+KV
Sbjct: 235 EKKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQKEKELMKV 275
>gi|11277801|pir||T48108 hypothetical protein F16M2.40 - Arabidopsis thaliana
gi|7523401|emb|CAB86420.1| putative protein [Arabidopsis thaliana]
Length = 289
Score = 352 bits (904), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 190/293 (64%), Positives = 227/293 (77%), Gaps = 21/293 (7%)
Query: 1 MATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSRL 60
MA FSST P + + ++N K LL LPDSC R +A S S R + + +L
Sbjct: 1 MAASFSSTAPTTPVLRFRANYSKPLLSLPDSCLRIISSAI----SPSTRLIACSFKTDKL 56
Query: 61 -----VKLSNKPIVVRQLAHKR------NGVVRCATIEEIEAEKSSIEKDVKARMERTID 109
V LS P+V R L ++ V+R ATIEEIEAEKS+IE DVK++ME+TI+
Sbjct: 57 PLGAGVNLSGGPVVKRSLQKRQVPLMIWELVIRSATIEEIEAEKSAIETDVKSKMEKTIE 116
Query: 110 MVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKS----- 164
+RT+FNS+RTGRSN AMLDKIEVEYYGSPVSLKSIAQI+TPD SSLL+QPYDKS
Sbjct: 117 TLRTSFNSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLLQPYDKSRYMTN 176
Query: 165 -SLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
+L +IEKAIV+SDLG+TPNNDG+VIRL+LP LTS+RRKELSKVVAKQ+EEGKVA+RNIR
Sbjct: 177 GALMAIEKAIVNSDLGVTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQSEEGKVALRNIR 236
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RDALK+Y+KL+KEKKLSEDNVKDLSSDLQKL D YMKKI+ +YKQKEKEL+KV
Sbjct: 237 RDALKSYDKLEKEKKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQKEKELMKV 289
>gi|7388105|sp|P82231.1|RRFC_SPIOL RecName: Full=Ribosome-recycling factor, chloroplastic; Short=RRF;
AltName: Full=CpFrr; AltName: Full=RRFHCP; AltName:
Full=Ribosome-releasing factor, chloroplastic; Flags:
Precursor
gi|4689034|emb|CAB41419.1| chloroplast ribosome recycling factor protein [Spinacia oleracea]
Length = 271
Score = 348 bits (894), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 173/240 (72%), Positives = 207/240 (86%), Gaps = 5/240 (2%)
Query: 41 CRASSVSVRQWSSAANYSRL----VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSI 96
C + +V W S+ANY R+ K S K +VV+QL R G RCAT+EE+EAEKS I
Sbjct: 33 CNIARTNVSVWRSSANYVRMDCGVKKFSGKAVVVKQL-QNRAGTFRCATMEEVEAEKSLI 91
Query: 97 EKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSL 156
E + K RME+TI+ +R+NFNSVRT R++P MLD+IEVEYYG+PVSLKSIAQI+TPD+SSL
Sbjct: 92 ETNTKQRMEKTIETIRSNFNSVRTNRASPTMLDRIEVEYYGTPVSLKSIAQISTPDASSL 151
Query: 157 LIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
LI PYDKSSLK+IEKAIV+S LG++PNNDGEVIRL+LP LTS+RRKEL+KVV+K AEEGK
Sbjct: 152 LISPYDKSSLKAIEKAIVTSQLGVSPNNDGEVIRLSLPPLTSDRRKELAKVVSKLAEEGK 211
Query: 217 VAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VAVRNIRRDALK+YEKL+KEKKLSEDNVKDLS+DLQKLTDEYMKK++SIYKQKE+EL+KV
Sbjct: 212 VAVRNIRRDALKSYEKLEKEKKLSEDNVKDLSADLQKLTDEYMKKVESIYKQKEQELMKV 271
>gi|7404451|sp|P37706.2|RRFC_DAUCA RecName: Full=Ribosome-recycling factor, chloroplastic; Short=RRF;
AltName: Full=Nuclear located protein D2; AltName:
Full=Ribosome-releasing factor, chloroplastic; Flags:
Precursor
Length = 227
Score = 340 bits (871), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 166/230 (72%), Positives = 203/230 (88%), Gaps = 7/230 (3%)
Query: 51 WSSAANYSRL----VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMER 106
W++AANY ++ K + K +V L+ KR G ++CAT+EEIEAEKS IEK VK RME+
Sbjct: 1 WTAAANYVKIKVGTGKFARKTVV---LSQKRTGTLKCATMEEIEAEKSLIEKSVKERMEK 57
Query: 107 TIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSL 166
TI+ V+ +FNS+RT RSNP MLDKI+VEYYG+P SLKSIAQI+TPDSSSLL+ PYDKSSL
Sbjct: 58 TIENVKASFNSIRTXRSNPDMLDKIKVEYYGTPTSLKSIAQISTPDSSSLLVNPYDKSSL 117
Query: 167 KSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDA 226
K IEKAIV+SDLG+TPNNDG+VIRL++PQLT++RRKELSK+VAKQAEEGKVA+RNIRRDA
Sbjct: 118 KDIEKAIVNSDLGITPNNDGDVIRLSIPQLTADRRKELSKIVAKQAEEGKVALRNIRRDA 177
Query: 227 LKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+K+Y+KL+KEKKLSEDNVKDLSSDLQK+ DEY+KK+DSI+KQKEKEL+ V
Sbjct: 178 IKSYDKLEKEKKLSEDNVKDLSSDLQKVIDEYIKKVDSIFKQKEKELMTV 227
>gi|388497414|gb|AFK36773.1| unknown [Lotus japonicus]
Length = 231
Score = 325 bits (832), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 164/238 (68%), Positives = 191/238 (80%), Gaps = 13/238 (5%)
Query: 2 ATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSRLV 61
AT FS P+RSIFQ NPPK LFLP+S + + SS+S SR +
Sbjct: 3 ATSFSPATPVRSIFQ---NPPKTTLFLPESFY------GVKRSSISASASYVTLKLSRTL 53
Query: 62 KLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTG 121
LS KPI L+H+R G+VR AT+EEIEAEK +IEKDV+ RME+TI+ VR+NFNS+RTG
Sbjct: 54 TLSAKPI----LSHRRMGIVRAATMEEIEAEKKAIEKDVRNRMEKTIENVRSNFNSIRTG 109
Query: 122 RSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMT 181
RSNP+MLDKIEVEYYG+P SLKSIAQI+ PD SSLL+QPYDKSSLK+IEKAIVSSDLGMT
Sbjct: 110 RSNPSMLDKIEVEYYGAPASLKSIAQISAPDGSSLLVQPYDKSSLKAIEKAIVSSDLGMT 169
Query: 182 PNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKL 239
PNNDGEVIRL++PQLTS+RRKELSKVV+KQ EEGKVA+RNIRRDALKAYEKL+KEK
Sbjct: 170 PNNDGEVIRLSIPQLTSDRRKELSKVVSKQTEEGKVALRNIRRDALKAYEKLEKEKSF 227
>gi|116792732|gb|ABK26473.1| unknown [Picea sitchensis]
Length = 279
Score = 319 bits (818), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 151/208 (72%), Positives = 184/208 (88%), Gaps = 4/208 (1%)
Query: 73 LAHK----RNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAML 128
+HK R GV RCATIEEIEAEK IE+D RME+T++ ++TNFNS+RTGR++PA L
Sbjct: 72 FSHKERNVRTGVCRCATIEEIEAEKQLIEEDAIERMEKTLETIKTNFNSIRTGRASPAFL 131
Query: 129 DKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEV 188
D++EVEYYGSPV+LKS+AQ++ PD +LL+QPYDKSSLKSIEKAI S+LG+TP+NDG V
Sbjct: 132 DRVEVEYYGSPVNLKSLAQVSVPDGGTLLVQPYDKSSLKSIEKAISKSNLGLTPSNDGNV 191
Query: 189 IRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLS 248
IRL++PQLTSERRKEL KVVAK AEEGK+A+RNIRRDA+KAYEKL+KEKKLSEDNVKDLS
Sbjct: 192 IRLSIPQLTSERRKELLKVVAKIAEEGKIAIRNIRRDAIKAYEKLEKEKKLSEDNVKDLS 251
Query: 249 SDLQKLTDEYMKKIDSIYKQKEKELLKV 276
DLQK+TDE++KK+DS+YKQKEKEL+ V
Sbjct: 252 GDLQKVTDEFIKKVDSLYKQKEKELMTV 279
>gi|242080283|ref|XP_002444910.1| hypothetical protein SORBIDRAFT_07g001230 [Sorghum bicolor]
gi|241941260|gb|EES14405.1| hypothetical protein SORBIDRAFT_07g001230 [Sorghum bicolor]
Length = 265
Score = 319 bits (818), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 158/228 (69%), Positives = 197/228 (86%), Gaps = 6/228 (2%)
Query: 53 SAANYSRL----VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTI 108
S+ N++RL V +P+V+R + V+ ATIEEIEAEKS IE K +ME+ I
Sbjct: 40 SSINFARLRAGPVDFGGRPLVLRH--SDKRAVLMHATIEEIEAEKSLIEDQAKEKMEKAI 97
Query: 109 DMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKS 168
+ V+TNFN+VRTGR+NPAMLD+IEVEYYG+PV+LKSIAQI+TPD++SLLIQPYDKSSLK
Sbjct: 98 ETVQTNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQISTPDATSLLIQPYDKSSLKL 157
Query: 169 IEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALK 228
IEK IV+++LG+TP+NDGEVIR+T+P LTS+RRKEL+K VAK +E+GKVA+RNIRRDA+K
Sbjct: 158 IEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLSEDGKVAIRNIRRDAIK 217
Query: 229 AYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
AY+KLQKEKKLSEDNVKDLS+DLQK+TDEYMKKIDSI KQKE+EL+K+
Sbjct: 218 AYDKLQKEKKLSEDNVKDLSADLQKVTDEYMKKIDSIQKQKEQELMKI 265
>gi|255559434|ref|XP_002520737.1| ribosome recycling factor, putative [Ricinus communis]
gi|223540122|gb|EEF41699.1| ribosome recycling factor, putative [Ricinus communis]
Length = 247
Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 169/252 (67%), Positives = 193/252 (76%), Gaps = 14/252 (5%)
Query: 1 MATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSRL 60
MAT FSS +++ L P C L + T S + + N+
Sbjct: 1 MATQFSSKPSFKTLLSL----PACHTVL-----KIIPTVPVCVSGTRLLATPAPPNFPAN 51
Query: 61 VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRT 120
LSN + G VRCATIEEIEAEKSSIEKD KARME+TI+ VRTNFNS+RT
Sbjct: 52 RSLSNT-----WCKRGKRGFVRCATIEEIEAEKSSIEKDAKARMEKTIETVRTNFNSIRT 106
Query: 121 GRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGM 180
GR+NP+MLDKIEVEYYG+PVSLKSIAQI+TPD+SSLL+QPYDKSSLKSIEKAIVSSDLG+
Sbjct: 107 GRANPSMLDKIEVEYYGTPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVSSDLGL 166
Query: 181 TPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLS 240
TPNNDGEVIRL++PQLTSERRKE+SK+VAK AEEGKVA+RNIRRDALKAYEKL+KEKKLS
Sbjct: 167 TPNNDGEVIRLSIPQLTSERRKEMSKMVAKLAEEGKVALRNIRRDALKAYEKLEKEKKLS 226
Query: 241 EDNVKDLSSDLQ 252
EDNVKDLS DLQ
Sbjct: 227 EDNVKDLSGDLQ 238
>gi|115472897|ref|NP_001060047.1| Os07g0570700 [Oryza sativa Japonica Group]
gi|158513666|sp|A2YMU2.2|RRFC_ORYSI RecName: Full=Ribosome-recycling factor, chloroplastic; Short=RRF;
AltName: Full=Protein OsL8; AltName:
Full=Ribosome-releasing factor, chloroplastic; Flags:
Precursor
gi|158513703|sp|A3BLC3.2|RRFC_ORYSJ RecName: Full=Ribosome-recycling factor, chloroplastic; Short=RRF;
AltName: Full=Protein OsL8; AltName:
Full=Ribosome-releasing factor, chloroplastic; Flags:
Precursor
gi|34394208|dbj|BAC84660.1| putative Ribosome recycling factor, chloroplast precursor [Oryza
sativa Japonica Group]
gi|113611583|dbj|BAF21961.1| Os07g0570700 [Oryza sativa Japonica Group]
gi|218199871|gb|EEC82298.1| hypothetical protein OsI_26546 [Oryza sativa Indica Group]
gi|222637311|gb|EEE67443.1| hypothetical protein OsJ_24808 [Oryza sativa Japonica Group]
Length = 266
Score = 316 bits (810), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 158/230 (68%), Positives = 200/230 (86%), Gaps = 6/230 (2%)
Query: 51 WSSAANYSRL----VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMER 106
SS+ N+ L ++ ++P+++ Q + KR V+R ATIEEIEAEKS IE + RME+
Sbjct: 39 LSSSTNFMSLRAGPMRFYSRPLIL-QNSDKR-AVLRHATIEEIEAEKSVIEDQARERMEK 96
Query: 107 TIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSL 166
I+ V+ NFN+VRTGR+NPAMLD+IEVEYYG+PV+LKSIAQINTPD++SLLIQPYDKSSL
Sbjct: 97 AIETVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATSLLIQPYDKSSL 156
Query: 167 KSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDA 226
K IEK IV+++LG+TP+NDGEVIR+T+P LTS+RRKEL+K VAK AEEGKVA+RNIRRDA
Sbjct: 157 KLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEEGKVAIRNIRRDA 216
Query: 227 LKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+KAY+KL+KEKKLSEDNVKDLS+DLQK+TDEYMKKI++I KQKE+EL+K+
Sbjct: 217 IKAYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIEAIQKQKEQELMKI 266
>gi|219362787|ref|NP_001137010.1| hypothetical protein [Zea mays]
gi|194697972|gb|ACF83070.1| unknown [Zea mays]
gi|223972995|gb|ACN30685.1| unknown [Zea mays]
gi|413941645|gb|AFW74294.1| hypothetical protein ZEAMMB73_186637 [Zea mays]
gi|413941646|gb|AFW74295.1| hypothetical protein ZEAMMB73_186637 [Zea mays]
Length = 266
Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 158/229 (68%), Positives = 197/229 (86%), Gaps = 7/229 (3%)
Query: 53 SAANYSRLVKLSNKPI--VVRQL--AHK-RNGVVRCATIEEIEAEKSSIEKDVKARMERT 107
S+ N++R KL + P+ R+L H + V+ ATIEEIEAEKS IE K +ME+
Sbjct: 40 SSTNFAR--KLQDGPVDFAARRLVLGHSDKRAVLTHATIEEIEAEKSLIEDQAKEKMEKA 97
Query: 108 IDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLK 167
I+ V+TNFN+VRTGR++PAMLD+IEVEYYG+PV+LKSIAQI+TPD++SLLIQPYDKSSLK
Sbjct: 98 IETVQTNFNTVRTGRASPAMLDRIEVEYYGTPVNLKSIAQISTPDATSLLIQPYDKSSLK 157
Query: 168 SIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDAL 227
IEK IV+++LG+TP+NDGEVIR+T+P LTS+RRKEL+K VAK AE+GKVA+RNIRRDA+
Sbjct: 158 LIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEDGKVAIRNIRRDAI 217
Query: 228 KAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
KAY+KLQKEKKLSEDNVKDLS+DLQK+TDEYMK IDSI KQKE+EL+K+
Sbjct: 218 KAYDKLQKEKKLSEDNVKDLSADLQKVTDEYMKNIDSIQKQKEQELMKI 266
>gi|357122371|ref|XP_003562889.1| PREDICTED: ribosome-recycling factor, chloroplastic-like
[Brachypodium distachyon]
Length = 266
Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 154/220 (70%), Positives = 194/220 (88%), Gaps = 2/220 (0%)
Query: 57 YSRLVKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFN 116
+S V + P+V+ Q + KR V+R ATIEEIEAEK+ IE K +ME+ I+ V+TNFN
Sbjct: 49 HSGAVGFFSAPLVI-QYSDKR-AVLRHATIEEIEAEKTIIEDQAKEKMEKAIETVQTNFN 106
Query: 117 SVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSS 176
+VRTGR+NPAMLD+IEVEYYG+PV+LKSIAQINTPD++SLLIQPYDK+ LK IEKAIV++
Sbjct: 107 TVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATSLLIQPYDKTCLKLIEKAIVAA 166
Query: 177 DLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKE 236
++G+TP+NDGEVIR+T+P LTS+RRKE++K VAK +EEGKVA+RNIRRDA+KAY+KL+KE
Sbjct: 167 NIGVTPSNDGEVIRVTVPPLTSDRRKEMTKTVAKLSEEGKVAIRNIRRDAIKAYDKLEKE 226
Query: 237 KKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
KKLSEDNVKDLS+DLQKLTDEYMKK+++I KQKE+EL KV
Sbjct: 227 KKLSEDNVKDLSADLQKLTDEYMKKVEAIQKQKEQELSKV 266
>gi|226497262|ref|NP_001150478.1| ribosome recycling factor [Zea mays]
gi|195639534|gb|ACG39235.1| ribosome recycling factor [Zea mays]
Length = 264
Score = 310 bits (794), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 152/216 (70%), Positives = 190/216 (87%), Gaps = 2/216 (0%)
Query: 61 VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRT 120
V + +P+V+ + + V+ ATIEEIEAEKS IE K +ME+ I+ V+ NFN+VRT
Sbjct: 51 VDFAGRPLVLGR--SDKRAVLMHATIEEIEAEKSLIEDQAKEKMEKAIETVQANFNTVRT 108
Query: 121 GRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGM 180
GR+NPAMLD+IEVEYYG+PV+LKSIAQI+TPD++SLLIQPYDKSSLK IEK IV+++LG+
Sbjct: 109 GRANPAMLDRIEVEYYGTPVNLKSIAQISTPDATSLLIQPYDKSSLKLIEKTIVAANLGV 168
Query: 181 TPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLS 240
TP+NDGEVIR+T+P LTS+RRKELSK VAK AE+GKVA+RNIRRDA+KAY+KL+KEKKLS
Sbjct: 169 TPSNDGEVIRVTVPPLTSDRRKELSKTVAKLAEDGKVAIRNIRRDAIKAYDKLEKEKKLS 228
Query: 241 EDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
EDNVKDLS+DLQK+TDEYMKKI+SI KQKE+EL+K+
Sbjct: 229 EDNVKDLSADLQKVTDEYMKKIESIQKQKEQELMKI 264
>gi|224034227|gb|ACN36189.1| unknown [Zea mays]
gi|413921479|gb|AFW61411.1| ribosome recycling factor [Zea mays]
Length = 264
Score = 310 bits (793), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 152/216 (70%), Positives = 190/216 (87%), Gaps = 2/216 (0%)
Query: 61 VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRT 120
V + +P+V+ + + V+ ATIEEIEAEKS IE K +ME+ I+ V+ NFN+VRT
Sbjct: 51 VDFAGRPLVLGR--SDKRAVLMHATIEEIEAEKSLIEDQAKEKMEKAIETVQANFNTVRT 108
Query: 121 GRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGM 180
GR+NPAMLD+IEVEYYG+PV+LKSIAQI+TPD++SLLIQPYDKSSLK IEK IV+++LG+
Sbjct: 109 GRANPAMLDRIEVEYYGTPVNLKSIAQISTPDATSLLIQPYDKSSLKLIEKTIVAANLGV 168
Query: 181 TPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLS 240
TP+NDGEVIR+T+P LTS+RRKELSK VAK AE+GKVA+RNIRRDA+KAY+KL+KEKKLS
Sbjct: 169 TPSNDGEVIRVTVPPLTSDRRKELSKTVAKLAEDGKVAIRNIRRDAIKAYDKLEKEKKLS 228
Query: 241 EDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
EDNVKDLS+DLQK+TDEYMKKI+SI KQKE+EL+K+
Sbjct: 229 EDNVKDLSADLQKVTDEYMKKIESIQKQKEQELMKI 264
>gi|413921480|gb|AFW61412.1| hypothetical protein ZEAMMB73_873979 [Zea mays]
Length = 195
Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 148/193 (76%), Positives = 179/193 (92%)
Query: 84 ATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLK 143
ATIEEIEAEKS IE K +ME+ I+ V+ NFN+VRTGR+NPAMLD+IEVEYYG+PV+LK
Sbjct: 3 ATIEEIEAEKSLIEDQAKEKMEKAIETVQANFNTVRTGRANPAMLDRIEVEYYGTPVNLK 62
Query: 144 SIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKE 203
SIAQI+TPD++SLLIQPYDKSSLK IEK IV+++LG+TP+NDGEVIR+T+P LTS+RRKE
Sbjct: 63 SIAQISTPDATSLLIQPYDKSSLKLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKE 122
Query: 204 LSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 263
LSK VAK AE+GKVA+RNIRRDA+KAY+KL+KEKKLSEDNVKDLS+DLQK+TDEYMKKI+
Sbjct: 123 LSKTVAKLAEDGKVAIRNIRRDAIKAYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIE 182
Query: 264 SIYKQKEKELLKV 276
SI KQKE+EL+K+
Sbjct: 183 SIQKQKEQELMKI 195
>gi|326490946|dbj|BAJ90140.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326512904|dbj|BAK03359.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 147/219 (67%), Positives = 191/219 (87%), Gaps = 2/219 (0%)
Query: 58 SRLVKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNS 117
S V P+V+ Q + KR V+R AT EEIE EK+ +E+ K +ME+ I+ V++NFN+
Sbjct: 50 SGAVGFFGVPLVL-QHSDKR-AVLRHATNEEIEEEKTIVEEQAKEKMEKAIETVQSNFNT 107
Query: 118 VRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSD 177
VRTGR+NP+MLD+IEVEYYG+PV+LK+IAQ+NTPD++SLLIQPYDKS LK IEKAIV+++
Sbjct: 108 VRTGRANPSMLDRIEVEYYGTPVNLKTIAQVNTPDATSLLIQPYDKSCLKLIEKAIVAAN 167
Query: 178 LGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEK 237
+G+TP+NDGEVIR+T+P LTS+RRKE++K VAK +EEGKVA+RNIRRDA+KAY+KL+KEK
Sbjct: 168 IGVTPSNDGEVIRVTVPPLTSDRRKEMTKTVAKLSEEGKVAIRNIRRDAIKAYDKLEKEK 227
Query: 238 KLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
KLSEDNVKDLS+DLQK+TDEYMKK+++I KQKE+EL KV
Sbjct: 228 KLSEDNVKDLSADLQKITDEYMKKVEAIQKQKEQELSKV 266
>gi|116792122|gb|ABK26242.1| unknown [Picea sitchensis]
Length = 173
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 130/173 (75%), Positives = 161/173 (93%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
ME+T++ ++TNFNS+RTGR++PA LD++EVEYYGSPV+LKS+AQ++ PD +LL+QPYDK
Sbjct: 1 MEKTLETIKTNFNSIRTGRASPAFLDRVEVEYYGSPVNLKSLAQVSVPDGGTLLVQPYDK 60
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
SSLKSIEKAI S+LG+TP+NDG VIRL++PQLTSERRKEL KVVAK AEEGK+A+RNIR
Sbjct: 61 SSLKSIEKAISKSNLGLTPSNDGNVIRLSIPQLTSERRKELLKVVAKIAEEGKIAIRNIR 120
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RDA+KAYEKL+KEKKLSEDNVKDLS DLQK+TDE++KK+DS+YKQKEKEL+ V
Sbjct: 121 RDAIKAYEKLEKEKKLSEDNVKDLSGDLQKVTDEFIKKVDSLYKQKEKELMTV 173
>gi|168045141|ref|XP_001775037.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673624|gb|EDQ60144.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 264
Score = 281 bits (718), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 137/228 (60%), Positives = 186/228 (81%), Gaps = 3/228 (1%)
Query: 49 RQWSSAANYSRLVKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTI 108
+Q S A+ R ++S+ I+ R R+ V+R AT E++EAEK IE D RME+++
Sbjct: 40 QQLSFASVALRKCRVSSIKILGR---PTRSPVIRGATTEDVEAEKELIEMDAMERMEKSL 96
Query: 109 DMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKS 168
+ + +FN+VRTGR+ P++LD+++VEYYG+ V LKSIAQI TPD S++LI P+DKSSL S
Sbjct: 97 EATKASFNTVRTGRATPSLLDRVQVEYYGTNVILKSIAQITTPDGSTILITPFDKSSLTS 156
Query: 169 IEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALK 228
IEK++V SD+G+TPNNDG VIRL +PQLT++RRKEL K+V+K +EEGKVA+RN+RRDA+K
Sbjct: 157 IEKSLVKSDIGITPNNDGNVIRLNVPQLTADRRKELLKLVSKLSEEGKVAIRNVRRDAIK 216
Query: 229 AYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+YEKL+KEKKLSEDNVKDLS D+QK+TD+Y+KKID+++KQKEKEL V
Sbjct: 217 SYEKLEKEKKLSEDNVKDLSGDIQKMTDDYIKKIDALFKQKEKELQTV 264
>gi|147799481|emb|CAN77406.1| hypothetical protein VITISV_026196 [Vitis vinifera]
Length = 222
Score = 281 bits (718), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 150/223 (67%), Positives = 173/223 (77%), Gaps = 16/223 (7%)
Query: 1 MATHFSSTGPMRSIFQLKS-NPPKCLLFLP--DSCHRRAETATCRASSVSVRQWSSAANY 57
MA FS P+R+IFQ KS +P C P + CH A ++R SAANY
Sbjct: 1 MAMTFSPATPVRTIFQRKSLSPGGCYCRGPGYEKCHLNIGIA------FTLR---SAANY 51
Query: 58 SRLV----KLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRT 113
RL + S K IV ++ KR G+ RCATIEEIEAEKSSIEKDVK RME+TI+ VRT
Sbjct: 52 XRLGDGAREYSGKLIVAKRNFQKRTGIFRCATIEEIEAEKSSIEKDVKERMEKTIETVRT 111
Query: 114 NFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAI 173
NFNS+RTGR+NPA+LD++EVEYYG+PVSLKSIAQI+TPDS+SLL+QPYDKSSLK IEKAI
Sbjct: 112 NFNSIRTGRANPAILDRVEVEYYGTPVSLKSIAQISTPDSASLLVQPYDKSSLKVIEKAI 171
Query: 174 VSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
VSSDLG+TPNNDGEVIRL+LPQLTSERRKELSKVVAKQ EEGK
Sbjct: 172 VSSDLGLTPNNDGEVIRLSLPQLTSERRKELSKVVAKQTEEGK 214
>gi|302762955|ref|XP_002964899.1| hypothetical protein SELMODRAFT_83448 [Selaginella moellendorffii]
gi|302809577|ref|XP_002986481.1| hypothetical protein SELMODRAFT_124362 [Selaginella moellendorffii]
gi|300145664|gb|EFJ12338.1| hypothetical protein SELMODRAFT_124362 [Selaginella moellendorffii]
gi|300167132|gb|EFJ33737.1| hypothetical protein SELMODRAFT_83448 [Selaginella moellendorffii]
Length = 192
Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 126/191 (65%), Positives = 170/191 (89%)
Query: 81 VRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPV 140
VR AT+E+IEAEK +E+D RME+TI+ V++NFN++RTGR++PA+LD++EVEYYG+ V
Sbjct: 1 VRAATVEDIEAEKQLVEEDAMERMEKTIETVKSNFNTIRTGRASPALLDRVEVEYYGTLV 60
Query: 141 SLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSER 200
LK+IAQI+TPD S++L+QP+D+SSL +I+KAI SDLG+TP+NDG VIRL +PQLT+ER
Sbjct: 61 LLKTIAQISTPDGSTILVQPFDRSSLSAIDKAITKSDLGLTPSNDGIVIRLNIPQLTAER 120
Query: 201 RKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMK 260
RKEL K+VAK EEGKVA+RN+RRDA+K+YEKL+KEKK+S DNVKDLS+++Q+LTDEY+K
Sbjct: 121 RKELLKLVAKLTEEGKVALRNVRRDAIKSYEKLEKEKKISTDNVKDLSTEMQRLTDEYVK 180
Query: 261 KIDSIYKQKEK 271
+D ++KQKEK
Sbjct: 181 TVDDLFKQKEK 191
>gi|297891|emb|CAA51077.1| nuclear located protein [Daucus carota]
Length = 167
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 127/155 (81%), Positives = 149/155 (96%)
Query: 122 RSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMT 181
RSNP MLDKI+VEYYG+P SLKSIAQI+TPDSSSLL+ PYDKSSLK IEKAIV+SDLG+T
Sbjct: 13 RSNPDMLDKIKVEYYGTPTSLKSIAQISTPDSSSLLVNPYDKSSLKDIEKAIVNSDLGIT 72
Query: 182 PNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSE 241
PNNDG+VIRL++PQLT++RRKELSK+VAKQAEEGKVA+RNIRRDA+K+Y+KL+KEKKLSE
Sbjct: 73 PNNDGDVIRLSIPQLTADRRKELSKIVAKQAEEGKVALRNIRRDAIKSYDKLEKEKKLSE 132
Query: 242 DNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
DNVKDLSSDLQK+ DEY+KK+DSI+KQKEKEL+ V
Sbjct: 133 DNVKDLSSDLQKVIDEYIKKVDSIFKQKEKELMTV 167
>gi|449489766|ref|XP_004158409.1| PREDICTED: ribosome-recycling factor, chloroplastic-like [Cucumis
sativus]
Length = 270
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 143/217 (65%), Positives = 166/217 (76%), Gaps = 9/217 (4%)
Query: 1 MATHFSSTGPMR-SIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSR 59
MAT FS+T +R S+FQ + PPK LL L D + C + + + W SA+NY R
Sbjct: 1 MATPFSATASIRRSLFQ--NPPPKSLLSLRDY-NGGLNCVKCGSITAHLCSWKSASNYVR 57
Query: 60 L----VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNF 115
L + +S + V + R VVR ATIEEIEAEK+ IEKDVKARME+TID VR+NF
Sbjct: 58 LNRQALVISTQLSVSGNVFKNRRLVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNF 117
Query: 116 NSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVS 175
NS+RTGRSNPAMLDKIEVEYYGSPVSLKSIAQI+TPD+SSLL+QPYDKSSLKSIEKAIV+
Sbjct: 118 NSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVN 177
Query: 176 SDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQA 212
SDLGMTPNNDGEVIRLTLPQLTSERRK V+ K+A
Sbjct: 178 SDLGMTPNNDGEVIRLTLPQLTSERRKS-DHVIVKEA 213
>gi|307111396|gb|EFN59630.1| hypothetical protein CHLNCDRAFT_29191 [Chlorella variabilis]
Length = 255
Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 103/190 (54%), Positives = 148/190 (77%), Gaps = 8/190 (4%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
++E+D +ME++++ V+ +F +VRTGR+N AMLD+IE +YYG+ L+++A ++TP+S+
Sbjct: 66 TVEEDTMEKMEKSVESVKRSFGTVRTGRANAAMLDRIEFDYYGAMTPLRTVASVSTPEST 125
Query: 155 SLLIQ--------PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSK 206
L+IQ PYD S++ +IE+AI+ SDLG+TPNNDG VIRL +PQLT+ERRKE+ K
Sbjct: 126 LLVIQARALLAAAPYDTSAIPAIERAIMQSDLGLTPNNDGRVIRLQVPQLTAERRKEMVK 185
Query: 207 VVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 266
+V+K EEGKVAVRN+RRDA+KA EKL+K+ +SED KDL + +QKLTDEY+K+I+ +
Sbjct: 186 IVSKLGEEGKVAVRNVRRDAMKAIEKLEKDGGISEDQRKDLENAVQKLTDEYVKEIEGLA 245
Query: 267 KQKEKELLKV 276
K K EL KV
Sbjct: 246 KSKSDELTKV 255
>gi|428218435|ref|YP_007102900.1| ribosome recycling factor [Pseudanabaena sp. PCC 7367]
gi|427990217|gb|AFY70472.1| ribosome recycling factor [Pseudanabaena sp. PCC 7367]
Length = 182
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 102/178 (57%), Positives = 139/178 (78%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V+ +M++ ID ++NFN+VRTGR++ ++LD+I VEYYG P LKS+A I+TPDSS++ I
Sbjct: 5 EVEDKMQKAIDATQSNFNTVRTGRASTSLLDRINVEYYGMPTPLKSLANISTPDSSTITI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYDK S+ IE+AI SDLG+ PNNDG+VIRL +PQLT+ERR+EL K+VAK AEEGKVA
Sbjct: 65 QPYDKGSMGQIERAIAESDLGLMPNNDGQVIRLNIPQLTTERREELIKMVAKLAEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RN+RRDA+ + K +K K++SED + L D+ KLT +Y KKID + KEKE+ V
Sbjct: 125 IRNVRRDAIDSVRKQEKAKEISEDESRGLQEDVDKLTSKYTKKIDDVLAAKEKEISTV 182
>gi|86610317|ref|YP_479079.1| ribosome recycling factor [Synechococcus sp. JA-2-3B'a(2-13)]
gi|123500677|sp|Q2JHW2.1|RRF_SYNJB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|86558859|gb|ABD03816.1| ribosome recycling factor [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 182
Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 101/175 (57%), Positives = 139/175 (79%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+++ M + + + +FN+VRTGR+N ++LD+I+VEYYG P LK++A + TPDSS+LLI
Sbjct: 5 EIEELMNKAVQATQRSFNTVRTGRANSSLLDRIQVEYYGVPTPLKALASLTTPDSSTLLI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D S+L +IE+AIV+SDLG+TP+NDG+V+RLT+P LT ERRKELSK VAK AEEG+V+
Sbjct: 65 QPFDPSTLAAIERAIVASDLGLTPSNDGKVVRLTIPPLTEERRKELSKQVAKLAEEGRVS 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+RNIRRD + + K +K +LSED K L D+QKLTD Y+KKID + +KEKEL
Sbjct: 125 IRNIRRDGIDSVRKREKNGELSEDESKSLQDDIQKLTDRYIKKIDELLAEKEKEL 179
>gi|145343357|ref|XP_001416314.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576539|gb|ABO94607.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 176
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 98/174 (56%), Positives = 136/174 (78%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RME+T+D + +F++VRTGR+N A+LD+IEV+YYG+P LK+IA +TPD+ ++ IQP+D
Sbjct: 3 RMEKTMDAIANDFSTVRTGRANAAVLDRIEVDYYGAPTPLKTIANASTPDAQTITIQPFD 62
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS++K IE+AI SDLGM P+NDG +IRL +P LT+ERRKEL+K+V+K E+GKVA+RN+
Sbjct: 63 KSAIKDIERAINESDLGMNPSNDGNIIRLNVPPLTAERRKELAKLVSKLGEDGKVALRNV 122
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA+KAYEKL+K ED + L ++ LT Y+KK+D + K KE EL KV
Sbjct: 123 RRDAMKAYEKLEKAGSFGEDEIAKLKKSMEDLTASYVKKVDELTKAKETELQKV 176
>gi|308800952|ref|XP_003075257.1| putative Ribosome recycling factor, (ISS) [Ostreococcus tauri]
gi|116061811|emb|CAL52529.1| putative Ribosome recycling factor, (ISS) [Ostreococcus tauri]
Length = 236
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 106/213 (49%), Positives = 147/213 (69%), Gaps = 7/213 (3%)
Query: 71 RQLAHKRNGVVRCATIEEIEAEKSS-------IEKDVKARMERTIDMVRTNFNSVRTGRS 123
R + R CA + A+ SS IE D RME+T+D + +F++VRTGR+
Sbjct: 24 RAWSTTRASTTPCAKGKGAPADASSNDVDPEEIELDAMERMEKTMDAIANDFSTVRTGRA 83
Query: 124 NPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPN 183
N ++LD+IEV+YYG+ LK+IA +TPD+ +++IQP+DK ++K IE+AI SDLGMTP+
Sbjct: 84 NASVLDRIEVDYYGAATPLKTIANASTPDAQTIVIQPFDKGAIKDIERAINESDLGMTPS 143
Query: 184 NDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDN 243
NDG VIRL +P LT ERRKEL+K+V+K E+GKVA+RN+RRDA+KAYEKL+K+ L ED
Sbjct: 144 NDGNVIRLNVPTLTEERRKELAKLVSKLGEDGKVALRNVRRDAMKAYEKLEKDNALGEDE 203
Query: 244 VKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+ L ++ LT Y+KK+D K EL KV
Sbjct: 204 IAKLKKSMEDLTSAYVKKVDEATAAKSAELSKV 236
>gi|86605415|ref|YP_474178.1| ribosome recycling factor [Synechococcus sp. JA-3-3Ab]
gi|86553957|gb|ABC98915.1| ribosome recycling factor [Synechococcus sp. JA-3-3Ab]
Length = 182
Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 100/175 (57%), Positives = 138/175 (78%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+++ M + + + +FN+VRTGR+N ++LD+I+VEYYG P LK++A + TPDSS+LLI
Sbjct: 5 EIEELMNKAVQATQRSFNTVRTGRANSSLLDRIQVEYYGVPTPLKALASLTTPDSSTLLI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D S+L +IE+AIV+SDLG+TP+NDG+V+RLT+P LT ERRKELSK VAK AEEG+V+
Sbjct: 65 QPFDPSTLAAIERAIVASDLGLTPSNDGKVVRLTIPPLTEERRKELSKQVAKLAEEGRVS 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+RNIRRD + + K +K +LSED K L +QKLTD Y+KKID + +KEKEL
Sbjct: 125 IRNIRRDGIDSVRKREKNGELSEDESKSLQDAIQKLTDRYIKKIDELLAEKEKEL 179
>gi|307152127|ref|YP_003887511.1| ribosome recycling factor [Cyanothece sp. PCC 7822]
gi|306982355|gb|ADN14236.1| ribosome recycling factor [Cyanothece sp. PCC 7822]
Length = 182
Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 99/178 (55%), Positives = 138/178 (77%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V+ M++TI+ + +FN++RTGR+N ++LD++ VEYYG+ LKS+A I TPD++++ I
Sbjct: 5 EVQENMQKTIEATQRSFNTIRTGRANASLLDRVTVEYYGTETPLKSLANITTPDATTIAI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYD+SSL IEKAI SD+G+TPNNDG++IRL +P LTS+RRKEL K+ K AEEGKVA
Sbjct: 65 QPYDRSSLGKIEKAIQMSDVGLTPNNDGQIIRLNIPPLTSDRRKELVKLAGKLAEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRNIRRDA+ A K +K ++SED ++L D+QK+TDEY KID + K KEK++ V
Sbjct: 125 VRNIRRDAIDAIRKQEKSHEISEDEARNLQDDIQKITDEYNAKIDELLKAKEKDITTV 182
>gi|22297803|ref|NP_681050.1| ribosome recycling factor [Thermosynechococcus elongatus BP-1]
gi|34222747|sp|Q8DM64.1|RRF_THEEB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|22293980|dbj|BAC07812.1| ribosome releasing factor [Thermosynechococcus elongatus BP-1]
Length = 182
Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 98/178 (55%), Positives = 141/178 (79%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
DV+ RM+++++ + +FNS+RTGR+N A+LD++ V+YYG+ L+S+A ++TPD++++LI
Sbjct: 5 DVEERMQKSVEATQHDFNSIRTGRANAALLDRVMVDYYGTETPLRSLANVSTPDATTILI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYD+S+L SIEKAI SDLG+TPNNDG +RL +P LT+ERRKEL K AK AE GKVA
Sbjct: 65 QPYDRSTLASIEKAIQLSDLGLTPNNDGSSVRLNIPPLTTERRKELVKTAAKIAEGGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ +K K +L+ED VKDL +QKLTD+Y+ KID++ +KEK+++ V
Sbjct: 125 IRNIRRDAIDHIKKAGKAGELTEDEVKDLQEKVQKLTDKYIGKIDALLAEKEKDIMTV 182
>gi|411121008|ref|ZP_11393380.1| ribosome recycling factor [Oscillatoriales cyanobacterium JSC-12]
gi|410709677|gb|EKQ67192.1| ribosome recycling factor [Oscillatoriales cyanobacterium JSC-12]
Length = 182
Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 99/178 (55%), Positives = 138/178 (77%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
DV+ M ++++ + +FN++RTGR+NPA+LD+I VEYYG+P LKS+A I+TPD+S++ I
Sbjct: 5 DVEDHMHKSVEATQRSFNTIRTGRANPALLDRISVEYYGAPTPLKSLANISTPDASTIAI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D+SSL IEKAI SDLG+TPNNDG IR+ +P LTS+RRKEL K+ AK AEEGKV+
Sbjct: 65 QPFDRSSLSLIEKAIQMSDLGLTPNNDGSTIRINIPPLTSDRRKELVKLAAKFAEEGKVS 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ A K +K +SED +DL LQKLTD+Y+ K++ + +KEK++ V
Sbjct: 125 IRNIRRDAVDAVRKQEKNSDISEDESRDLQDKLQKLTDKYIAKVEELLAEKEKDITTV 182
>gi|86606512|ref|YP_475275.1| ribosome recycling factor [Synechococcus sp. JA-3-3Ab]
gi|86555054|gb|ABD00012.1| ribosome recycling factor [Synechococcus sp. JA-3-3Ab]
Length = 182
Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 98/175 (56%), Positives = 139/175 (79%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+++ M + + + +FN+VRTGR+N ++LD+++VEYYG P LK++A I TPD+S+LLI
Sbjct: 5 EIEELMSKAVQATQRSFNTVRTGRANASLLDRVQVEYYGVPTPLKALASITTPDASTLLI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D S+L +IE+AIV+SDLG+TP+NDG+V+RL +P LT ERRKELSK VAK AEEG+V+
Sbjct: 65 QPFDPSTLAAIERAIVASDLGLTPSNDGKVVRLNIPPLTEERRKELSKQVAKLAEEGRVS 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+RNIRRDA+ + K +K ++SED K L ++QKLTD Y+KKID + +KEKEL
Sbjct: 125 IRNIRRDAIDSVRKREKNGEISEDESKSLQEEIQKLTDRYIKKIDDLLAEKEKEL 179
>gi|428221718|ref|YP_007105888.1| ribosome recycling factor [Synechococcus sp. PCC 7502]
gi|427995058|gb|AFY73753.1| ribosome recycling factor [Synechococcus sp. PCC 7502]
Length = 187
Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 99/175 (56%), Positives = 138/175 (78%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
DV+ARM++ I+ + NFN+VRTGR++ A+LD++ VEYYGSP LKS+A + TPDS++++I
Sbjct: 10 DVEARMQKGIEATQQNFNTVRTGRASTALLDRVMVEYYGSPTPLKSLANVTTPDSTTIMI 69
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYD+ SL I +AI SD+G+TPNNDG IRL +P LTS+RRKEL K+VAK AEEGKV
Sbjct: 70 QPYDRGSLNIISRAISESDVGLTPNNDGISIRLNIPPLTSDRRKELVKLVAKLAEEGKVG 129
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
VRN+RRDA+ + K +K K++SED K+L + K+TD+++KK+D I +KEKE+
Sbjct: 130 VRNVRRDAIDSVRKQEKSKEISEDESKNLQEQIDKITDKFIKKMDQILAEKEKEI 184
>gi|434400388|ref|YP_007134392.1| ribosome recycling factor [Stanieria cyanosphaera PCC 7437]
gi|428271485|gb|AFZ37426.1| ribosome recycling factor [Stanieria cyanosphaera PCC 7437]
Length = 182
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 96/178 (53%), Positives = 137/178 (76%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
++K M++T++ + +FN++RTGR+N ++LD++ VEYYG+ LKS+A I+TPD+++++I
Sbjct: 5 EIKEHMQKTVEATQRSFNTIRTGRANASLLDRVVVEYYGTETPLKSLANISTPDATTIVI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYDK S+ IEKAI SDLG+TPNNDG+VIRL +P LTSERR+EL K+ K AEEGKV
Sbjct: 65 QPYDKGSMAQIEKAITMSDLGLTPNNDGQVIRLNIPPLTSERRQELVKMAGKLAEEGKVG 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ A K +K ++SED +DL +QK+TDEY KKID + KE+++ V
Sbjct: 125 IRNIRRDAIDAVRKQEKNSEISEDEARDLQDQIQKVTDEYTKKIDDLLSAKEQDISTV 182
>gi|428210142|ref|YP_007094495.1| ribosome recycling factor [Chroococcidiopsis thermalis PCC 7203]
gi|428012063|gb|AFY90626.1| ribosome recycling factor [Chroococcidiopsis thermalis PCC 7203]
Length = 182
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 96/178 (53%), Positives = 141/178 (79%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ ++ M++T++ + +FN++RTGR+N ++LD++ VEYYGSP SLKS+A I+TPD++++ I
Sbjct: 5 EAESTMQKTVEATQRSFNTIRTGRANASLLDRVMVEYYGSPTSLKSLASISTPDATTITI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D+S+L SIEKAI SD+G+TPNNDG IRL +P LTSERRKE K+ AK AEEGKVA
Sbjct: 65 QPFDRSTLNSIEKAISMSDVGLTPNNDGSTIRLNIPPLTSERRKEFIKLAAKYAEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDAL+ K +K +++ED +DL LQKLT++Y+++ID + +K+KE+ V
Sbjct: 125 IRNIRRDALETIRKQEKSSEVTEDEARDLQDRLQKLTNKYIERIDELLAEKDKEISTV 182
>gi|354567994|ref|ZP_08987161.1| Ribosome-recycling factor [Fischerella sp. JSC-11]
gi|353541668|gb|EHC11135.1| Ribosome-recycling factor [Fischerella sp. JSC-11]
Length = 182
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 97/178 (54%), Positives = 138/178 (77%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ ++ M++T++ + FN++RTGR+N ++LDK+ VEYYG+P LKS+A I+TPD++++LI
Sbjct: 5 EAESTMQKTVEATQRAFNTIRTGRANASLLDKVTVEYYGTPTPLKSLANISTPDATTILI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYD+SSL IEKAI SD+G+TP+NDG VIRL +P LTSERRKEL K+ AK AEEG+V
Sbjct: 65 QPYDRSSLNLIEKAISMSDVGLTPSNDGSVIRLNIPPLTSERRKELVKIAAKYAEEGRVG 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDAL+ K++K ++SED +D LQKLTD+Y KI+ + +KEK++ V
Sbjct: 125 IRNIRRDALETIRKMEKNSEVSEDEARDQQDKLQKLTDKYTAKINELLAEKEKDITTV 182
>gi|443323557|ref|ZP_21052562.1| ribosome recycling factor [Gloeocapsa sp. PCC 73106]
gi|442786737|gb|ELR96465.1| ribosome recycling factor [Gloeocapsa sp. PCC 73106]
Length = 182
Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 95/178 (53%), Positives = 142/178 (79%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
++K +M++TI+ + +FN++RTGR+N ++LD++ VEYYGS SLK++A I+TPD+S++LI
Sbjct: 5 EIKDQMQKTIESTQRSFNTIRTGRANASLLDRVTVEYYGSETSLKALANISTPDASTILI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D+ S+ IEKAI SD+G+TPNNDG++IRL +P LT++RR+EL K+ +K AEEGKVA
Sbjct: 65 QPFDRGSMAQIEKAISLSDIGITPNNDGQIIRLNIPPLTAQRRQELVKIASKYAEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ A K +K ++SED KDL +QK+T+E++ KID + K KEK++ V
Sbjct: 125 IRNIRRDAVDAARKQEKNHEISEDESKDLQEQIQKITNEHITKIDELLKVKEKDITTV 182
>gi|443476544|ref|ZP_21066445.1| ribosome recycling factor [Pseudanabaena biceps PCC 7429]
gi|443018494|gb|ELS32734.1| ribosome recycling factor [Pseudanabaena biceps PCC 7429]
Length = 187
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 96/175 (54%), Positives = 141/175 (80%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
DV+ARM++ ++ + NFN+VRTGR+N ++LD+I VEYYG+ LK++A I++PD+S+L I
Sbjct: 10 DVEARMQKAVEATQHNFNTVRTGRANASLLDRITVEYYGAETHLKALANISSPDASTLQI 69
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D+S++++IEKAI SD+G+TPNNDG IRL +P LT++RRKEL K+VAK AEEGKVA
Sbjct: 70 QPFDRSTMRAIEKAISESDIGLTPNNDGVSIRLNIPPLTTDRRKELVKMVAKLAEEGKVA 129
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+RNIRRDA+ + KL+K K++SED+ K + KLT++++K ID + +KEKE+
Sbjct: 130 IRNIRRDAIDSLRKLEKAKEISEDDSKSQQEQVDKLTEKFVKNIDKVTAEKEKEI 184
>gi|119487064|ref|ZP_01620936.1| ribosome releasing factor [Lyngbya sp. PCC 8106]
gi|119455993|gb|EAW37127.1| ribosome releasing factor [Lyngbya sp. PCC 8106]
Length = 182
Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 94/175 (53%), Positives = 139/175 (79%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V++ M++ ++ + +FN++RTGR+N ++LD++ VEYYG+P SLKS+A INTPDSS+++I
Sbjct: 5 EVESLMQKAVESTQRSFNTIRTGRANTSLLDRVMVEYYGTPTSLKSLATINTPDSSTIMI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D+ +L IEKAI SD+G+TPNNDG +IRL +P LTSERR+E K+ +K AEEGKV+
Sbjct: 65 QPFDRKTLDIIEKAISLSDVGLTPNNDGSIIRLNIPPLTSERRQEFVKLASKYAEEGKVS 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
VRN+RRDA+ + K +K K LSED +DL +QKLTD+Y KID +++ K+K++
Sbjct: 125 VRNVRRDAVDSVRKQEKSKDLSEDEARDLQDQIQKLTDKYTAKIDEMFEAKDKDI 179
>gi|428226861|ref|YP_007110958.1| ribosome recycling factor [Geitlerinema sp. PCC 7407]
gi|427986762|gb|AFY67906.1| ribosome recycling factor [Geitlerinema sp. PCC 7407]
Length = 182
Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 98/178 (55%), Positives = 137/178 (76%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V+ M++ ++ + FN+VRTGR+N ++LD++ VEYYG+ LKS+A INTPD++++ I
Sbjct: 5 EVEVHMQKAVESTQRAFNTVRTGRANVSLLDRVTVEYYGTETPLKSLANINTPDATTITI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYDK SL IEKAI SD+G+TPNNDG VIRL +P LT++RRKEL K+VAK AEEGKV+
Sbjct: 65 QPYDKGSLNVIEKAISLSDIGLTPNNDGSVIRLNIPPLTTDRRKELVKMVAKMAEEGKVS 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRNIRRDA+ A K +K ++SED +DL +QKLTD+Y +I+ I +KEK+++ V
Sbjct: 125 VRNIRRDAIDAIRKQEKSSEVSEDEARDLQDQVQKLTDKYSTRIEEILAEKEKDIMTV 182
>gi|428312785|ref|YP_007123762.1| ribosome recycling factor [Microcoleus sp. PCC 7113]
gi|428254397|gb|AFZ20356.1| ribosome recycling factor [Microcoleus sp. PCC 7113]
Length = 182
Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 96/175 (54%), Positives = 136/175 (77%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D ++ M++ ++ + FN++RTGR+N +LD++ V+YYGSP LKS+A INTPD+S++ I
Sbjct: 5 DAESNMQKAVEATQRAFNTIRTGRANATLLDRVMVDYYGSPTPLKSLANINTPDASTITI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYDK+SL +EKAI SD+G+TPNNDG+VIRL +P LTSERRKE K+ +K AEEGKVA
Sbjct: 65 QPYDKTSLNVVEKAIQLSDIGLTPNNDGQVIRLNVPPLTSERRKEFVKMASKFAEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+RNIRRDA+ + K +K ++SED KDL +QKLTD+++ KID + +KEK++
Sbjct: 125 IRNIRRDAVDSVRKQEKSSEISEDESKDLQDKIQKLTDKHIAKIDELLAEKEKDI 179
>gi|284928759|ref|YP_003421281.1| ribosome recycling factor [cyanobacterium UCYN-A]
gi|284809218|gb|ADB94923.1| ribosome recycling factor [cyanobacterium UCYN-A]
Length = 181
Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 97/178 (54%), Positives = 138/178 (77%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D+K M++T++ + +FN++RTGR+N A+LD++ V+YYGS V LKS+A INTPD+++LLI
Sbjct: 4 DLKDSMKKTVESTQKSFNTLRTGRANSAILDRVTVDYYGSEVQLKSLANINTPDATTLLI 63
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D+ S+ IEKAI SD+G+TPNNDG+VIRL +P LT ERRKEL K+ K AEEGKVA
Sbjct: 64 QPFDRGSIGQIEKAINMSDVGLTPNNDGQVIRLNIPPLTKERRKELVKIANKMAEEGKVA 123
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA++ K +K+ SED ++L ++QK+TDE+ KKID + K K+++ V
Sbjct: 124 IRNIRRDAIETVRKQEKDGDASEDESRNLQDNIQKVTDEFTKKIDELLTIKNKDIMTV 181
>gi|427732541|ref|YP_007078778.1| ribosome recycling factor [Nostoc sp. PCC 7524]
gi|427368460|gb|AFY51181.1| ribosome recycling factor [Nostoc sp. PCC 7524]
Length = 182
Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 98/178 (55%), Positives = 136/178 (76%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ +++M++T++ + FN++RTGR+N ++LDK+ VEYYGSP LKS+A I+TPD++++LI
Sbjct: 5 EAQSKMQKTVEATQHAFNTIRTGRANASLLDKVSVEYYGSPTPLKSLANISTPDATTILI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYDK SL IEKAI SD+G+TP+NDG VIRL +P LTS+RRKE K+ AK AEEG+V
Sbjct: 65 QPYDKGSLSLIEKAISMSDVGLTPSNDGSVIRLNIPPLTSDRRKEFVKLAAKYAEEGRVG 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDAL + K +K +LSED KD LQKLT++Y KID + +KEK++ V
Sbjct: 125 IRNIRRDALDSIRKQEKASELSEDESKDQQDKLQKLTNQYTTKIDELLAEKEKDITTV 182
>gi|434407401|ref|YP_007150286.1| ribosome recycling factor [Cylindrospermum stagnale PCC 7417]
gi|428261656|gb|AFZ27606.1| ribosome recycling factor [Cylindrospermum stagnale PCC 7417]
Length = 182
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 95/173 (54%), Positives = 137/173 (79%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M++T++ + FN++RTGR+N ++LDK++VEYYG+P SLKS+A I+TPD+S++LIQPYD+
Sbjct: 10 MQKTVEATQRAFNTIRTGRANASLLDKVQVEYYGTPTSLKSLANISTPDASTILIQPYDR 69
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
SSL +EKAI SD+G+TP+NDG VIRL +P LTS+RRKEL+K+ AK AEEG+V +RNIR
Sbjct: 70 SSLNIVEKAISLSDVGLTPSNDGSVIRLNIPPLTSDRRKELAKLAAKYAEEGRVGIRNIR 129
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RDA+ + K +K ++SED +D LQKLTD+Y K++ + +KEK++ V
Sbjct: 130 RDAIDSIRKQEKNAEISEDEARDQQDKLQKLTDKYTAKVNELLAEKEKDISTV 182
>gi|427722319|ref|YP_007069596.1| ribosome recycling factor [Leptolyngbya sp. PCC 7376]
gi|427354039|gb|AFY36762.1| ribosome recycling factor [Leptolyngbya sp. PCC 7376]
Length = 182
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 98/178 (55%), Positives = 135/178 (75%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+++ M++TID + +FNS+RTGR++ A+LD+I VEYYG+ LKS+A I TPDSS+++I
Sbjct: 5 ELRDNMKKTIDATQRSFNSLRTGRASAALLDRITVEYYGADTPLKSLASITTPDSSTIMI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+DK S+ IE+AI SDLG+TPNNDG ++RL +P LT ERRKEL K +K AEEGKVA
Sbjct: 65 QPFDKGSVSDIERAISMSDLGLTPNNDGTIVRLNIPPLTKERRKELVKTASKLAEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ K +K +SED +DL D+QK+TDE+ KID + K KEK+++ V
Sbjct: 125 IRNIRRDAIDDVRKQEKNSDISEDESRDLQDDVQKITDEFTSKIDELLKVKEKDIMTV 182
>gi|298489665|ref|YP_003719842.1| ribosome recycling factor ['Nostoc azollae' 0708]
gi|298231583|gb|ADI62719.1| ribosome recycling factor ['Nostoc azollae' 0708]
Length = 182
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 96/178 (53%), Positives = 140/178 (78%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ +++M++T++ + FN++RTGR+N ++LD+I+VEYYGSP LKS+A I+TPD+S++LI
Sbjct: 5 EAESKMQKTVESTQQAFNTIRTGRANASLLDRIQVEYYGSPTPLKSLANISTPDASTILI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYD+SSL +EKAI SD+G+TP+NDG VIRL +P LTS+RRKE +K+ AK AEEG+V
Sbjct: 65 QPYDRSSLNILEKAISLSDIGITPSNDGSVIRLNIPPLTSDRRKEFAKLAAKYAEEGRVG 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDAL + K +K ++SED +D LQKLT++Y +KID + +KEK++ V
Sbjct: 125 IRNIRRDALDSIRKQEKAAEISEDESRDQQDKLQKLTNKYTEKIDHLLTEKEKDITTV 182
>gi|428200723|ref|YP_007079312.1| ribosome recycling factor [Pleurocapsa sp. PCC 7327]
gi|427978155|gb|AFY75755.1| ribosome recycling factor [Pleurocapsa sp. PCC 7327]
Length = 182
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 96/178 (53%), Positives = 136/178 (76%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
DV+ M++TI+ + FN++RTGR+N A+LD++ V+YYG+ LKS+A I+TPD++++++
Sbjct: 5 DVQENMQKTIEATQRAFNTIRTGRANAALLDRVTVDYYGTETPLKSLANISTPDATTIIV 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYDKSS+ IEKAI SD+G+TPNNDG+VIRL +P LT+ERRKEL K+ K AEEGKVA
Sbjct: 65 QPYDKSSMAQIEKAISMSDVGLTPNNDGQVIRLNIPPLTAERRKELVKLAGKLAEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ + K +K ++SED KDL +QK+TD + KID + KEK++ V
Sbjct: 125 LRNIRRDAIDSVRKQEKNHEISEDESKDLQDRIQKITDRFTAKIDELLAAKEKDITTV 182
>gi|428779229|ref|YP_007171015.1| ribosome recycling factor [Dactylococcopsis salina PCC 8305]
gi|428693508|gb|AFZ49658.1| ribosome recycling factor [Dactylococcopsis salina PCC 8305]
Length = 182
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 94/175 (53%), Positives = 138/175 (78%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
DV+ +M++ ID + +FNS+RTGR+N ++LD++ VEYYG LKS+A I+TPD++++ I
Sbjct: 5 DVETKMKKAIDATQQSFNSLRTGRANASVLDRVMVEYYGMETPLKSLANISTPDATTITI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYDK SL+ IEKAI SD+G+TPNNDGE++RL +P LTS+RR+EL K+ K AEEG+V+
Sbjct: 65 QPYDKGSLQQIEKAISMSDIGLTPNNDGEMVRLNIPPLTSDRRQELVKIAGKYAEEGRVS 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+RNIRRDA++ K +K+ +LSED +D+ +QKLTD+Y+ K+D I K KE+++
Sbjct: 125 IRNIRRDAIEEVRKAEKKHELSEDEARDIQDKIQKLTDKYVAKVDEILKAKEEDI 179
>gi|17228703|ref|NP_485251.1| ribosome recycling factor [Nostoc sp. PCC 7120]
gi|22001942|sp|Q8YXK4.1|RRF_ANASP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|17130555|dbj|BAB73165.1| ribosome recycling factor [Nostoc sp. PCC 7120]
Length = 182
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 96/175 (54%), Positives = 138/175 (78%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ +++M+ T++ + FN++RTGR+N ++LDK+ V+YYGSP LKS+A I+TPD++++LI
Sbjct: 5 EAESKMQHTVEATQRAFNTIRTGRANASLLDKVLVDYYGSPTPLKSLANISTPDATTILI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYDKSSL +EKAI SD+G+TP+NDG VIRL +P LTS+RRKEL K+ AK AEEG+VA
Sbjct: 65 QPYDKSSLNIVEKAISLSDVGLTPSNDGAVIRLNIPPLTSDRRKELVKIAAKYAEEGRVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+RNIRRDA+ + KL+K ++SED KD LQKLT++Y +ID + +KEK++
Sbjct: 125 IRNIRRDAVDSIRKLEKNAEVSEDEAKDQQDKLQKLTNKYTARIDELLVEKEKDI 179
>gi|32400999|gb|AAP80705.1| ribosome recycling factor [Griffithsia japonica]
Length = 230
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 109/251 (43%), Positives = 166/251 (66%), Gaps = 25/251 (9%)
Query: 27 FLPDSC-HRRAETATCRASSVSVRQWSSAANYSRLVKLSNKPIVVRQLAHKRNGVVRCAT 85
F+P SC H +T SA ++ + VK ++ L V C
Sbjct: 4 FIPSSCWHLNGGDST------------SALDWVKTVKSRRSILICHPLP------VVCEL 45
Query: 86 IEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSI 145
E AEKS +ARM++TID V++ FNSVRTGR++P++LD+I+V YYG+ L S+
Sbjct: 46 TENDTAEKS------EARMQKTIDSVKSAFNSVRTGRASPSLLDRIQVNYYGADTPLNSL 99
Query: 146 AQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELS 205
A ++ +S+L+++PYDKS + IE++++ SD+G+TPN+DG IRL++PQLT ERR +L
Sbjct: 100 ATVSVSGTSTLVVEPYDKSCISDIERSLMESDIGLTPNSDGSTIRLSIPQLTKERRSQLV 159
Query: 206 KVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 265
K V AE+G+VA+RNIRRDA+ + +KL+K+ +L +D K L +QKLTD+Y+K I+S+
Sbjct: 160 KQVKSMAEDGRVAIRNIRRDAVDSIKKLEKKSELGKDESKTLQDRVQKLTDKYVKTIESV 219
Query: 266 YKQKEKELLKV 276
YKQKE++++KV
Sbjct: 220 YKQKEEDIMKV 230
>gi|428775626|ref|YP_007167413.1| ribosome recycling factor [Halothece sp. PCC 7418]
gi|428689905|gb|AFZ43199.1| ribosome recycling factor [Halothece sp. PCC 7418]
Length = 182
Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 95/178 (53%), Positives = 138/178 (77%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
DV+ +M+++ID + +FNS+RTGR+N ++LD++ VEYYG LKS+A I+TPD++++ I
Sbjct: 5 DVENKMKKSIDATQQSFNSLRTGRANASVLDRVMVEYYGMETPLKSLANISTPDATTITI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYDK SL+ IEKAI SD+G+TPNNDGE++RL +P LTSERR+EL K+ K AEEG+V+
Sbjct: 65 QPYDKGSLEQIEKAISMSDVGLTPNNDGEMVRLNIPPLTSERRQELVKIAGKYAEEGRVS 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA++ K +K +LSED D+ +QKLTD+Y+ K+D + K KE+++ V
Sbjct: 125 IRNIRRDAIEEVRKAEKNHELSEDEAHDIQEKIQKLTDKYVSKVDELLKAKEEDITTV 182
>gi|428214638|ref|YP_007087782.1| ribosome recycling factor [Oscillatoria acuminata PCC 6304]
gi|428003019|gb|AFY83862.1| ribosome recycling factor [Oscillatoria acuminata PCC 6304]
Length = 182
Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 95/178 (53%), Positives = 135/178 (75%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V+ M++ ++ + +FN++RTGR+N ++LDK+ VEYYG+P LKS+A INTPD+S++ I
Sbjct: 5 EVEDLMKKAVEATQRSFNTIRTGRANTSLLDKVMVEYYGTPTPLKSLASINTPDASTISI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D+ SL IEKAI++SDLG+TPNNDG +IRL +PQLTS+RR EL KV K AEEGKVA
Sbjct: 65 QPFDRGSLAVIEKAILTSDLGLTPNNDGAIIRLNIPQLTSDRRLELVKVAGKYAEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RN RRD + + K +K +S+D + L D+QKLTD+Y+ KID + KEK++ V
Sbjct: 125 IRNARRDGIDSVRKQEKNSDISQDESRSLQDDIQKLTDKYVAKIDEVLAAKEKDITTV 182
>gi|427717439|ref|YP_007065433.1| ribosome recycling factor [Calothrix sp. PCC 7507]
gi|427349875|gb|AFY32599.1| ribosome recycling factor [Calothrix sp. PCC 7507]
Length = 182
Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 98/178 (55%), Positives = 135/178 (75%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ ++ M++T++ FN++RTGR+N ++LDK+ VEYYGSP SLKS+A I+TPD+S++LI
Sbjct: 5 EAESTMQKTVEATLRAFNTIRTGRANASLLDKVVVEYYGSPTSLKSLANISTPDASTILI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYD+SSL +EKAI SDLG+TP+NDG VIRL +P LTS+RRKE K AK AEEG+V
Sbjct: 65 QPYDRSSLNIVEKAISLSDLGLTPSNDGSVIRLNIPPLTSDRRKEFVKTAAKYAEEGRVG 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDAL + K +K ++SED +D LQKLT++Y KID + +KEK++ V
Sbjct: 125 IRNIRRDALDSIRKQEKSAEISEDEARDQQDKLQKLTNKYTTKIDELLAEKEKDISTV 182
>gi|332705597|ref|ZP_08425673.1| ribosome recycling factor [Moorea producens 3L]
gi|332355389|gb|EGJ34853.1| ribosome recycling factor [Moorea producens 3L]
Length = 182
Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 94/178 (52%), Positives = 137/178 (76%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
DV+ M++ ++ + FN++RTGR++ ++LD++ VEYYG+P LKS+A INTPD+S++ I
Sbjct: 5 DVETSMQKAVEATQRAFNTIRTGRASTSLLDRVMVEYYGTPTPLKSLANINTPDASTITI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYDKS L IEKAI SDL + PNN+GEV+RL +P LTSERRKE K+ +K AEEG+V+
Sbjct: 65 QPYDKSMLSQIEKAITLSDLDLPPNNNGEVVRLNIPPLTSERRKEFVKMASKFAEEGRVS 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ + K K K++SED +DL ++QKLT++Y KK+D ++ KEK+++ V
Sbjct: 125 IRNIRRDAVDSVRKQDKNKEISEDESRDLQDEIQKLTNKYTKKVDEVFAAKEKDIMTV 182
>gi|56751022|ref|YP_171723.1| ribosome recycling factor [Synechococcus elongatus PCC 6301]
gi|81299318|ref|YP_399526.1| ribosome recycling factor [Synechococcus elongatus PCC 7942]
gi|60390663|sp|Q5N3B7.1|RRF_SYNP6 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|123557390|sp|Q31QY0.1|RRF_SYNE7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|56685981|dbj|BAD79203.1| ribosome recycling factor [Synechococcus elongatus PCC 6301]
gi|81168199|gb|ABB56539.1| ribosome recycling factor [Synechococcus elongatus PCC 7942]
Length = 182
Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 94/178 (52%), Positives = 141/178 (79%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
DV++ M+++++ +FN++RTGR+N ++LDKI V+YYGS LKS+A I+TPD+S+L I
Sbjct: 5 DVESTMQKSVEATLRSFNTIRTGRANASLLDKIVVDYYGSETPLKSLASISTPDASTLQI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D+SS+ +IEKAI SD+G+TPNNDG++IRL +P LTS+RRKEL K+ AK AEEGKVA
Sbjct: 65 QPFDRSSMGAIEKAISLSDIGLTPNNDGQIIRLNIPPLTSDRRKELVKLAAKYAEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RN+RRDA+ + KL+K ++SED+ +D +QKLTD++ K++ + KEK+++ V
Sbjct: 125 IRNVRRDAIDSIRKLEKSGEISEDDARDQQDQVQKLTDKFSAKVEQLLSDKEKDIMTV 182
>gi|427710077|ref|YP_007052454.1| ribosome recycling factor [Nostoc sp. PCC 7107]
gi|427362582|gb|AFY45304.1| ribosome recycling factor [Nostoc sp. PCC 7107]
Length = 182
Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 97/173 (56%), Positives = 134/173 (77%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M++T++ + FN++RTGR+N ++LDK+ V+YYGSP +LKS+A I+TPD++++LIQPYDK
Sbjct: 10 MQKTVESTQRAFNTIRTGRANSSLLDKVMVDYYGSPTALKSLANISTPDATTILIQPYDK 69
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
SSL +EKAI SD+G+TPNNDG VIRL +P LTS+RRKE K+ AK AEEG+VA+RNIR
Sbjct: 70 SSLNIVEKAISLSDVGLTPNNDGSVIRLNIPPLTSDRRKEFVKLAAKYAEEGRVAIRNIR 129
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
R+AL K +K ++SED KD LQKLTD+Y KI+ + +KEK++ V
Sbjct: 130 REALDTIRKQEKASEVSEDEAKDQQDKLQKLTDKYTAKINELLAEKEKDISTV 182
>gi|220909994|ref|YP_002485305.1| ribosome recycling factor [Cyanothece sp. PCC 7425]
gi|254809507|sp|B8HL79.1|RRF_CYAP4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|219866605|gb|ACL46944.1| ribosome recycling factor [Cyanothece sp. PCC 7425]
Length = 182
Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 95/175 (54%), Positives = 137/175 (78%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
DV+ M+++++ + FN++RTGR+N ++LD++ VEYYG+ L+S+A I+TPDSS++ I
Sbjct: 5 DVEDHMQKSVEATQRAFNTIRTGRANTSLLDRVTVEYYGAETPLRSLANISTPDSSTIAI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D++SL IEKAI SDLG+TPNNDG VIRL +P LTS+RRKEL K +K AEEGKV+
Sbjct: 65 QPFDRNSLNLIEKAISMSDLGLTPNNDGTVIRLNIPPLTSDRRKELVKTASKLAEEGKVS 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+RN+RRDA+ + +K K +LSED VKDL +QKLTD+Y+ K+D + +KEK++
Sbjct: 125 IRNVRRDAVDSVKKQGKAGELSEDEVKDLQDKIQKLTDKYIAKVDGLLAEKEKDI 179
>gi|434393452|ref|YP_007128399.1| ribosome recycling factor [Gloeocapsa sp. PCC 7428]
gi|428265293|gb|AFZ31239.1| ribosome recycling factor [Gloeocapsa sp. PCC 7428]
Length = 182
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 94/173 (54%), Positives = 134/173 (77%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M++ ++ + FN++RTGR+N ++LD++ VEYYG+P +LKS+A I+TPD++++ IQPYD+
Sbjct: 10 MQKAVEATQRAFNTIRTGRANASLLDRVMVEYYGTPTALKSLANISTPDATTITIQPYDR 69
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
SSL IEKAI SD+G+TPNNDG +IRL +P LTS+RRKEL K+ AK AEEG+V++RNIR
Sbjct: 70 SSLNLIEKAISMSDVGLTPNNDGSMIRLNIPPLTSDRRKELVKLAAKYAEEGRVSIRNIR 129
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RDAL K +K ++SED +DL LQKLT++Y KID + +KEK++ V
Sbjct: 130 RDALDTIRKQEKNSEISEDEAQDLQDKLQKLTNKYTSKIDELLAEKEKDITTV 182
>gi|440680129|ref|YP_007154924.1| ribosome recycling factor [Anabaena cylindrica PCC 7122]
gi|428677248|gb|AFZ56014.1| ribosome recycling factor [Anabaena cylindrica PCC 7122]
Length = 182
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 94/178 (52%), Positives = 136/178 (76%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ +++M+ T++ + FN++RTGR+N ++LDK++VEYYG+P LKS+A I+TPD+S++LI
Sbjct: 5 EAESKMQHTVEATQRAFNTIRTGRANASLLDKVQVEYYGTPTGLKSLANISTPDASTILI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYDK SL +EKAI SD+G+TP+NDG VIRL +P LTS+RRKE K+ AK AEEG+V
Sbjct: 65 QPYDKGSLNIVEKAISLSDIGITPSNDGSVIRLNIPPLTSDRRKEFVKMAAKYAEEGRVG 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDAL + K +K ++SED +D LQKLT++Y +ID + +KEK++ V
Sbjct: 125 IRNIRRDALDSIRKQEKAAEVSEDESRDQQDKLQKLTNKYTARIDDLLTEKEKDITTV 182
>gi|443314164|ref|ZP_21043747.1| ribosome recycling factor [Leptolyngbya sp. PCC 6406]
gi|442786236|gb|ELR95993.1| ribosome recycling factor [Leptolyngbya sp. PCC 6406]
Length = 185
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 92/178 (51%), Positives = 135/178 (75%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D++ M + ++ R FN++RTGR+N ++LDK+ V+YYGSP LKS+A INTPD+S+L I
Sbjct: 8 DIEEAMAKAVEATRRAFNTIRTGRANASLLDKVMVDYYGSPTPLKSLANINTPDASTLSI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D SS+ +IEKAI SD+G+TPNNDG++IRL +P LTSERRKE KV +K AEEG+V+
Sbjct: 68 QPFDPSSVSAIEKAISLSDIGLTPNNDGKIIRLNIPPLTSERRKEFVKVASKYAEEGRVS 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRN+RR+ + + K +K+ ++SED +DL +Q LTD+Y+ +D + KEK+++ V
Sbjct: 128 VRNVRREGIDRFRKQEKDSEISEDESRDLQEQVQSLTDKYVALVDQAFADKEKDIMTV 185
>gi|443312882|ref|ZP_21042496.1| ribosome recycling factor [Synechocystis sp. PCC 7509]
gi|442777032|gb|ELR87311.1| ribosome recycling factor [Synechocystis sp. PCC 7509]
Length = 182
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 93/173 (53%), Positives = 134/173 (77%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M++++D +FN++RTGR+N ++LDK+ V+YYG+P LK++A IN PDSS++LIQPYD+
Sbjct: 10 MQKSVDATLRSFNTIRTGRANASLLDKVTVDYYGAPTGLKALANINAPDSSTILIQPYDR 69
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
++L IEKAI SD+G+T NNDG VIRL +P LTS+RRKE K+ K AEEG+VA+R+IR
Sbjct: 70 TTLNMIEKAISLSDVGLTTNNDGTVIRLNIPPLTSDRRKEFVKLATKYAEEGRVAIRSIR 129
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RDA+ + K +K +LSED +D DLQKLT++Y+ KID + +KEK+++ V
Sbjct: 130 RDAIDSIRKQEKNSELSEDESRDRQEDLQKLTNKYIAKIDELLAEKEKDIMTV 182
>gi|282898680|ref|ZP_06306668.1| Ribosome recycling factor [Cylindrospermopsis raciborskii CS-505]
gi|281196548|gb|EFA71457.1| Ribosome recycling factor [Cylindrospermopsis raciborskii CS-505]
Length = 182
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/173 (54%), Positives = 133/173 (76%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M +T++ + FNS+RTGR+N ++LDK++V+YYGSP SLKS+A I TPD++++LIQPYD+
Sbjct: 10 MNKTVEATQRAFNSIRTGRANASLLDKVQVDYYGSPTSLKSLANITTPDATTILIQPYDR 69
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
+SL +EKAI SD+G+TP+NDG VIRL +P LTS+RRKEL K+ AK AEEG+V +RNIR
Sbjct: 70 TSLNIVEKAISLSDVGLTPSNDGSVIRLNIPPLTSDRRKELVKLAAKYAEEGRVGIRNIR 129
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RDAL + K +K ++SED +D LQK+T +Y KID + +KEK++ V
Sbjct: 130 RDALDSIRKQEKAGEVSEDESRDQQDKLQKITSKYTAKIDELLAEKEKDITTV 182
>gi|16331151|ref|NP_441879.1| ribosome recycling factor [Synechocystis sp. PCC 6803]
gi|383322894|ref|YP_005383747.1| ribosome releasing factor [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383326063|ref|YP_005386916.1| ribosome releasing factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491947|ref|YP_005409623.1| ribosome releasing factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384437215|ref|YP_005651939.1| ribosome releasing factor [Synechocystis sp. PCC 6803]
gi|451815308|ref|YP_007451760.1| ribosome releasing factor [Synechocystis sp. PCC 6803]
gi|3122780|sp|P74456.1|RRF_SYNY3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|1653645|dbj|BAA18557.1| ribosome releasing factor [Synechocystis sp. PCC 6803]
gi|339274247|dbj|BAK50734.1| ribosome releasing factor [Synechocystis sp. PCC 6803]
gi|359272213|dbj|BAL29732.1| ribosome releasing factor [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359275383|dbj|BAL32901.1| ribosome releasing factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359278553|dbj|BAL36070.1| ribosome releasing factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451781277|gb|AGF52246.1| ribosome releasing factor [Synechocystis sp. PCC 6803]
Length = 182
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 95/178 (53%), Positives = 135/178 (75%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
++K M+++++ + +FN++RTGR+N ++LD+I VEYYG+ LKS+A I TPD+S+++I
Sbjct: 5 ELKDHMQKSVEATQRSFNTIRTGRANASLLDRITVEYYGAETPLKSLATIGTPDASTIVI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D S+ +IEKAI SDLG+TPNNDG+VIRL +P LT+ERRKEL KV K AEEGKVA
Sbjct: 65 QPFDMGSIGTIEKAISLSDLGLTPNNDGKVIRLNIPPLTAERRKELVKVAGKLAEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ K +K +SED +DL ++QKLTD+ K+ID + KEK++ V
Sbjct: 125 IRNIRRDAVDEVRKQEKNSDISEDEARDLQEEIQKLTDQSTKRIDELLAAKEKDITTV 182
>gi|407961473|dbj|BAM54713.1| ribosome recycling factor [Synechocystis sp. PCC 6803]
Length = 186
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 95/178 (53%), Positives = 135/178 (75%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
++K M+++++ + +FN++RTGR+N ++LD+I VEYYG+ LKS+A I TPD+S+++I
Sbjct: 9 ELKDHMQKSVEATQRSFNTIRTGRANASLLDRITVEYYGAETPLKSLATIGTPDASTIVI 68
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D S+ +IEKAI SDLG+TPNNDG+VIRL +P LT+ERRKEL KV K AEEGKVA
Sbjct: 69 QPFDMGSIGTIEKAISLSDLGLTPNNDGKVIRLNIPPLTAERRKELVKVAGKLAEEGKVA 128
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ K +K +SED +DL ++QKLTD+ K+ID + KEK++ V
Sbjct: 129 IRNIRRDAVDEVRKQEKNSDISEDEARDLQEEIQKLTDQSTKRIDELLAAKEKDITTV 186
>gi|427417313|ref|ZP_18907496.1| ribosome recycling factor [Leptolyngbya sp. PCC 7375]
gi|425760026|gb|EKV00879.1| ribosome recycling factor [Leptolyngbya sp. PCC 7375]
Length = 185
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 95/178 (53%), Positives = 131/178 (73%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
DV+ M++ ++ + +FN++RTGR+N ++LD+I V+YYG+P L+S+A I+TPD S+L+I
Sbjct: 8 DVEQAMQKAVEATKRSFNTIRTGRANASLLDRISVDYYGAPTPLQSMANISTPDPSTLMI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYD S L IEKAI SD+G+ PNNDG VIRL +P LT+ERRKE K K AEEG+VA
Sbjct: 68 QPYDASILSQIEKAISLSDVGLVPNNDGSVIRLNIPPLTTERRKEFVKQAGKYAEEGRVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RN+RRD + +K +K LSED +DL +QKLTD+Y+K ID KEKE++KV
Sbjct: 128 IRNVRRDGMDFAKKQEKSGDLSEDEARDLQDQVQKLTDQYIKNIDKRLDDKEKEIMKV 185
>gi|218439649|ref|YP_002377978.1| ribosome recycling factor [Cyanothece sp. PCC 7424]
gi|226703257|sp|B7K7R4.1|RRF_CYAP7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|218172377|gb|ACK71110.1| ribosome recycling factor [Cyanothece sp. PCC 7424]
Length = 182
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 94/178 (52%), Positives = 136/178 (76%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V+ M++TI+ + +FN++RTGR+N A+LD++ V+YYG+ LKS+A I TPD++++ I
Sbjct: 5 EVQDNMQKTIESTQRSFNTIRTGRANSALLDRVMVDYYGTETPLKSLANITTPDATTIAI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYD+ S+ IEKAI SD+G+TPNNDG++IRL +P LT+ERRKEL K+ K AEEGKVA
Sbjct: 65 QPYDRGSMGQIEKAIQLSDIGLTPNNDGQMIRLNIPPLTTERRKELVKLAGKLAEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ + K +K +LSED ++L ++QK+TDEY KID + KEK++ V
Sbjct: 125 IRNIRRDAIDSVRKQEKNHELSEDESRNLQDEIQKVTDEYTAKIDELLAAKEKDISTV 182
>gi|414078729|ref|YP_006998047.1| ribosome recycling factor [Anabaena sp. 90]
gi|413972145|gb|AFW96234.1| ribosome recycling factor [Anabaena sp. 90]
Length = 182
Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 96/173 (55%), Positives = 134/173 (77%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M++T++ + FN++RTGR+N ++LDK++VEYYG+P SLK++ I+TPDSS++LIQPYDK
Sbjct: 10 MQKTVESTQRAFNTIRTGRANASLLDKVQVEYYGTPTSLKALTNISTPDSSTILIQPYDK 69
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
SL IEKAI SD+G+TP+NDG VIRL +P LTS+RRKE K+ AK AEEG+VA+RNIR
Sbjct: 70 GSLNIIEKAISLSDVGLTPSNDGSVIRLNIPPLTSDRRKEFVKLAAKYAEEGRVAIRNIR 129
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RDA + K +K ++SED +D LQKLT+++ +KID + +KEKE+ V
Sbjct: 130 RDANDSIRKQEKSAEISEDESRDQQDKLQKLTNKHTEKIDHLLVEKEKEITTV 182
>gi|365845529|ref|ZP_09386295.1| ribosome recycling factor [Flavonifractor plautii ATCC 29863]
gi|373115408|ref|ZP_09529582.1| ribosome recycling factor [Lachnospiraceae bacterium 7_1_58FAA]
gi|364560062|gb|EHM38018.1| ribosome recycling factor [Flavonifractor plautii ATCC 29863]
gi|371670474|gb|EHO35555.1| ribosome recycling factor [Lachnospiraceae bacterium 7_1_58FAA]
Length = 184
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 95/181 (52%), Positives = 138/181 (76%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
+ K+ A+M++TID+V ++F SVR GR+N A+LDKI V+YYG+P L +A I++PD S
Sbjct: 4 VNKEFDAKMQKTIDVVMSDFASVRAGRANAAVLDKITVDYYGAPTPLNQVAAISSPDPRS 63
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L+IQP+D + LK+IEKAI +SDLG+ P NDG+VIRL PQLT ERRKEL+K V K E G
Sbjct: 64 LMIQPWDSTLLKAIEKAIQTSDLGINPQNDGKVIRLAFPQLTEERRKELTKQVKKYGENG 123
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVA+RNIRRDA++ ++ ++K+ +++ED+ KD +LQ +T++ K+ID + +KE EL+
Sbjct: 124 KVAIRNIRRDAMEKFKAMEKKSEITEDDRKDYEKELQDMTEKRCKQIDELTAKKETELMA 183
Query: 276 V 276
V
Sbjct: 184 V 184
>gi|434387099|ref|YP_007097710.1| ribosome recycling factor [Chamaesiphon minutus PCC 6605]
gi|428018089|gb|AFY94183.1| ribosome recycling factor [Chamaesiphon minutus PCC 6605]
Length = 182
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 91/178 (51%), Positives = 135/178 (75%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
DV+ M++ ++ V +FN++RTGR++ ++LD++ ++YYG+P LKS+A I TPDS+++ I
Sbjct: 5 DVEGHMQKAVESVGRSFNTIRTGRASTSLLDRVTIDYYGTPTPLKSLANIGTPDSTTITI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D+SS+ +IEKAI SD+G+TPNNDG IRL +P LT ERRKE K +K AEEGK++
Sbjct: 65 QPFDRSSMSTIEKAISLSDIGLTPNNDGSTIRLNIPPLTGERRKEFVKQASKYAEEGKIS 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRNIRRDA+ +K +K ++SED KDL +QKLTD+Y +ID + +KEK+++ V
Sbjct: 125 VRNIRRDAIDFIKKQEKASEISEDESKDLQDKIQKLTDKYGAQIDRVLAEKEKDIMTV 182
>gi|282897920|ref|ZP_06305915.1| Ribosome recycling factor [Raphidiopsis brookii D9]
gi|281197064|gb|EFA71965.1| Ribosome recycling factor [Raphidiopsis brookii D9]
Length = 182
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 94/173 (54%), Positives = 132/173 (76%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M +T++ + FNS+RTGR+N ++LDK++V+YYGSP LKS++ I TPD+S++LIQPYD+
Sbjct: 10 MNKTVEATQRAFNSIRTGRANASLLDKVQVDYYGSPTPLKSLSNITTPDASTILIQPYDR 69
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
SSL +EKAI SD+G+TP+NDG V+RL +P LTS+RRKEL K+ AK AEEG+V +RNIR
Sbjct: 70 SSLNIVEKAISLSDVGLTPSNDGSVVRLNIPPLTSDRRKELVKLAAKYAEEGRVGIRNIR 129
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RDAL + K +K ++SED +D LQK+T +Y KID + +KEK++ V
Sbjct: 130 RDALDSIRKQEKAGEISEDESRDQQDKLQKITGKYTAKIDELLAEKEKDITTV 182
>gi|443325927|ref|ZP_21054599.1| ribosome recycling factor [Xenococcus sp. PCC 7305]
gi|442794468|gb|ELS03883.1| ribosome recycling factor [Xenococcus sp. PCC 7305]
Length = 182
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 94/178 (52%), Positives = 137/178 (76%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
++K+ ME+TI+ + +FN++RTGR++ ++LD++ V+YYGS L+S+A I+ PDS+++ I
Sbjct: 5 ELKSNMEKTIEATQRSFNTIRTGRASTSLLDRVMVDYYGSETPLQSLANISVPDSTTITI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYDK S+ IE+AI SD+G+TPNNDG+ IRL +P LT +RRKEL KV +K AEEGKVA
Sbjct: 65 QPYDKGSMAQIERAISMSDIGLTPNNDGQKIRLIIPALTKDRRKELVKVASKLAEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ A K +K ++SED +D+ +QK+TDEY KKID++ KEK++ V
Sbjct: 125 LRNIRRDAVDAVRKQEKSSEISEDESRDMQDQIQKVTDEYTKKIDALLAVKEKDITTV 182
>gi|254415746|ref|ZP_05029504.1| ribosome recycling factor [Coleofasciculus chthonoplastes PCC 7420]
gi|196177452|gb|EDX72458.1| ribosome recycling factor [Coleofasciculus chthonoplastes PCC 7420]
Length = 173
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 92/173 (53%), Positives = 132/173 (76%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M++ ++ + FN++RTGR+N ++LD++ VEYYGSP LKS+A INTPD++++ IQPYDK
Sbjct: 1 MKKAVEATQRGFNTIRTGRANASLLDRVMVEYYGSPTPLKSLASINTPDATTITIQPYDK 60
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
S+L IEK+I SD+G+TPNNDG+V+RL +P LTSERR+E K+ K AEEGKV++RNIR
Sbjct: 61 STLTLIEKSISLSDIGLTPNNDGQVVRLNIPPLTSERRQEFVKMAGKLAEEGKVSIRNIR 120
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RDA+ + K +K ++SED +DL +Q+LTD+Y KID + KEK++ V
Sbjct: 121 RDAVDSVRKQEKNSEISEDESRDLQDQIQQLTDKYTAKIDDLLVAKEKDITTV 173
>gi|186686172|ref|YP_001869368.1| ribosome recycling factor [Nostoc punctiforme PCC 73102]
gi|238691203|sp|B2IVW4.1|RRF_NOSP7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|186468624|gb|ACC84425.1| ribosome recycling factor [Nostoc punctiforme PCC 73102]
Length = 182
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 94/181 (51%), Positives = 139/181 (76%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I D K++M+ +++ + FN++RTGR+N ++LDK+ V+YYGSP LKS+A I+TPD+S+
Sbjct: 2 ILADAKSKMQSSVESTQRAFNTIRTGRANASLLDKVLVDYYGSPTPLKSLANISTPDAST 61
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
+LIQPY++++L IEKAI SD+G+TP+NDG VIRL +P LTS+RRKE K+ K AEEG
Sbjct: 62 ILIQPYERNTLNIIEKAISLSDVGLTPSNDGSVIRLNIPPLTSDRRKEFVKMATKYAEEG 121
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
+VA+RNIRRDA+ + K +K ++S+D KD +LQKLT+EY +ID++ +KEK++
Sbjct: 122 RVAIRNIRRDAIDSIRKQEKASEISKDESKDQQDNLQKLTNEYTSRIDALLAEKEKDITT 181
Query: 276 V 276
V
Sbjct: 182 V 182
>gi|161567479|ref|YP_321148.2| ribosome recycling factor [Anabaena variabilis ATCC 29413]
Length = 187
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 94/178 (52%), Positives = 136/178 (76%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ +++M+ T++ + FN++RTGR+N ++LDK+ V+YYGSP LKS+A I+TPD++++ I
Sbjct: 10 EAESKMQHTVEATQRAFNTIRTGRANASLLDKVLVDYYGSPTPLKSLANISTPDATTIQI 69
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYDK+SL IEKAI SD+G+TP+NDG IRL +P LTS+RRKEL K+ AK AEEG+VA
Sbjct: 70 QPYDKTSLNIIEKAISLSDVGLTPSNDGSAIRLNIPPLTSDRRKELVKLAAKYAEEGRVA 129
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ + K +K ++SED KD LQKLT++Y +ID + +KEK++ V
Sbjct: 130 IRNIRRDAIDSIRKQEKNAEVSEDEAKDQQDKLQKLTNKYTARIDELLAEKEKDITTV 187
>gi|384246873|gb|EIE20361.1| ribosome recycling factor [Coccomyxa subellipsoidea C-169]
Length = 174
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 93/174 (53%), Positives = 138/174 (79%), Gaps = 2/174 (1%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RME++++ + +F +VRTGR+ P MLD+I+VEYYG+ LK +A ++ P++S L+IQPYD
Sbjct: 3 RMEKSLESTKGSFATVRTGRATPGMLDRIQVEYYGAMTPLKQLATLSAPEASQLVIQPYD 62
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+S+ SIEKAI++SDLG+TP NDG +IR+ +PQLT++RRKE++K+V+K E+GKVA+RNI
Sbjct: 63 KTSIPSIEKAIMTSDLGLTPGNDGNLIRINVPQLTADRRKEMAKLVSKLGEDGKVALRNI 122
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA+K +K + K +SED K L +Q++TD+Y+K+ID+I K K+ EL V
Sbjct: 123 RRDAIKTIDK--RGKDISEDEKKALEDSIQEMTDDYVKQIDAIVKSKQTELTTV 174
>gi|416381881|ref|ZP_11684253.1| Ribosome recycling factor [Crocosphaera watsonii WH 0003]
gi|357265462|gb|EHJ14223.1| Ribosome recycling factor [Crocosphaera watsonii WH 0003]
Length = 181
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 90/178 (50%), Positives = 135/178 (75%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D+K M+++++ + +FN++RTGR+NPA+LD++ V+YYG+ L +A I+TP+++ ++I
Sbjct: 4 DLKDNMQKSVEATQRSFNTIRTGRANPAILDRVTVDYYGTETPLNQLANISTPEATMIMI 63
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYDK S+ IEKAI SD+G+TPNNDG+VIRL +P LT ERRK+L K+ +K AEEGKVA
Sbjct: 64 QPYDKGSMGQIEKAIQMSDVGLTPNNDGQVIRLNIPPLTEERRKDLVKLASKMAEEGKVA 123
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ K +K +S+D +DL D+QK+TD++ KID + K KE +++ V
Sbjct: 124 IRNIRRDAIDDVRKQEKNSDISKDESRDLQDDIQKVTDKFTNKIDDLLKSKETDIMTV 181
>gi|428307995|ref|YP_007144820.1| ribosome recycling factor [Crinalium epipsammum PCC 9333]
gi|428249530|gb|AFZ15310.1| ribosome recycling factor [Crinalium epipsammum PCC 9333]
Length = 182
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 90/178 (50%), Positives = 134/178 (75%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
DV++ M++T++ + +FN++RTGR+N ++LD++ VEYYG+ LKS+A I+TPD+S++ I
Sbjct: 5 DVESNMQKTVEATQRSFNTIRTGRANASLLDRVTVEYYGTQTPLKSLANISTPDASTITI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D+ S+ IE+AI SD+G+TPNNDG IRL +P LT+ERRKE K K AEEG+VA
Sbjct: 65 QPFDRGSVSVIERAISLSDVGLTPNNDGSTIRLNIPPLTTERRKEFVKFAGKYAEEGRVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ + K +K +L ED KDL +QK+TD+Y+ +ID + +KEK++ V
Sbjct: 125 IRNIRRDAVDSVRKQEKNHELPEDEAKDLLDKIQKVTDKYIARIDQVLAEKEKDITTV 182
>gi|427713965|ref|YP_007062589.1| ribosome recycling factor [Synechococcus sp. PCC 6312]
gi|427378094|gb|AFY62046.1| ribosome recycling factor [Synechococcus sp. PCC 6312]
Length = 182
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 95/178 (53%), Positives = 136/178 (76%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+++ M+++++ + FNS+RTGR++ ++LD+I V+YYG L+S+A I+TPD++++ I
Sbjct: 5 EIEDHMQKSVEATQRMFNSIRTGRASASLLDRITVDYYGIETPLRSLANISTPDATTITI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYD+SSL IEKAI SDLG+ PNNDG +RL +P LT++RRKEL K VAK AEEGKVA
Sbjct: 65 QPYDRSSLTQIEKAIQMSDLGLNPNNDGTAVRLNIPPLTTDRRKELVKTVAKLAEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ A +K K +LSED VKD +QKLTD+Y+ KI+S +KEK+++ V
Sbjct: 125 IRNIRRDAVDAVKKQGKNGELSEDQVKDSQDQIQKLTDKYIAKIESHLSEKEKDIMTV 182
>gi|113477237|ref|YP_723298.1| ribosome recycling factor [Trichodesmium erythraeum IMS101]
gi|123160353|sp|Q10Y49.1|RRF_TRIEI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|110168285|gb|ABG52825.1| ribosome recycling factor [Trichodesmium erythraeum IMS101]
Length = 182
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 94/179 (52%), Positives = 134/179 (74%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+ + +M++ I+ + +FN+VRTGR+N ++LD++ VEYYGSP LKS+A I PD+S++
Sbjct: 4 KEAEEKMQKAIEATKNSFNTVRTGRANASLLDRVMVEYYGSPTQLKSMANIGIPDASTIT 63
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQPYDK+SL IEKAI SD+G+TPNNDG +IRL +P LT+ERR+E+ K AK AEEGKV
Sbjct: 64 IQPYDKTSLGLIEKAINMSDVGLTPNNDGSIIRLNIPALTAERRQEMVKKTAKLAEEGKV 123
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
++RNIRRDA+ + K +K +S+D +DL +QK TD+Y+ KID + KEK++ V
Sbjct: 124 SIRNIRRDAVDSIRKQEKNSDISKDESRDLQDKVQKKTDKYIAKIDELLAAKEKDMTTV 182
>gi|428301411|ref|YP_007139717.1| ribosome recycling factor [Calothrix sp. PCC 6303]
gi|428237955|gb|AFZ03745.1| ribosome recycling factor [Calothrix sp. PCC 6303]
Length = 182
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 94/173 (54%), Positives = 131/173 (75%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M++T++ FN++RTGR+N ++LDK+ VEYYG+P LKS+ I+TPD++++LIQPYDK
Sbjct: 10 MQKTVEATLRAFNTIRTGRANSSLLDKVTVEYYGTPTPLKSLVNISTPDATTILIQPYDK 69
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
SSL ++EKAI SD+G+TP+NDG VIRL +P LTS+RRKE K+ AK AEEG+VA+RNIR
Sbjct: 70 SSLNAVEKAISLSDVGLTPSNDGSVIRLNIPPLTSDRRKEFVKLAAKYAEEGRVAIRNIR 129
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RD + A K +K ++SED +D LQKLTD+Y KI + +KEK++ V
Sbjct: 130 RDTVDAIRKQEKAGEMSEDESRDQQDKLQKLTDKYNAKISELLVEKEKDITTV 182
>gi|75700577|gb|ABA20253.1| ribosome recycling factor [Anabaena variabilis ATCC 29413]
Length = 173
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 94/173 (54%), Positives = 132/173 (76%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M+ T++ + FN++RTGR+N ++LDK+ V+YYGSP LKS+A I+TPD++++ IQPYDK
Sbjct: 1 MQHTVEATQRAFNTIRTGRANASLLDKVLVDYYGSPTPLKSLANISTPDATTIQIQPYDK 60
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
+SL IEKAI SD+G+TP+NDG IRL +P LTS+RRKEL K+ AK AEEG+VA+RNIR
Sbjct: 61 TSLNIIEKAISLSDVGLTPSNDGSAIRLNIPPLTSDRRKELVKLAAKYAEEGRVAIRNIR 120
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RDA+ + K +K ++SED KD LQKLT++Y +ID + +KEK++ V
Sbjct: 121 RDAIDSIRKQEKNAEVSEDEAKDQQDKLQKLTNKYTARIDELLAEKEKDITTV 173
>gi|56964004|ref|YP_175735.1| ribosome recycling factor [Bacillus clausii KSM-K16]
gi|60390232|sp|Q5WFT1.1|RRF_BACSK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|56910247|dbj|BAD64774.1| ribosome recycling factor [Bacillus clausii KSM-K16]
Length = 185
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 94/181 (51%), Positives = 136/181 (75%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I+ D K RM++ ID++ +R GR+NPA+LD++ VEYYG+ L +A + P++
Sbjct: 5 IKADAKTRMDKAIDVLSRELAKLRAGRANPALLDRVTVEYYGAQTPLNQLASVTVPEARL 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LLI PYDK+++ SIEKAI+ SDLG+TP+NDG+VIR+ +P LT ERRK+L ++V+K AEE
Sbjct: 65 LLITPYDKTAVASIEKAILKSDLGLTPSNDGQVIRIAIPPLTEERRKDLVRLVSKTAEES 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVAVRNIRRDA +KLQK+ +++ED ++ + D+QKLTD Y+ KID KQKE+E+++
Sbjct: 125 KVAVRNIRRDANDELKKLQKDGEMTEDELRSATDDIQKLTDTYVAKIDEKAKQKEQEIIE 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|354554151|ref|ZP_08973456.1| Ribosome-recycling factor [Cyanothece sp. ATCC 51472]
gi|353553830|gb|EHC23221.1| Ribosome-recycling factor [Cyanothece sp. ATCC 51472]
Length = 181
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 90/178 (50%), Positives = 134/178 (75%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D+K M+++++ + +FN++RTGR+N ++LD++ VEYYG+ L +A I+TPD+++++I
Sbjct: 4 DLKENMQKSVEATQRSFNTIRTGRANASILDRVTVEYYGTETPLYQLANISTPDATTIMI 63
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYDK S+ IEKAI SD+G+TPNNDG+VIRL +P LT ERRK+L K+ +K AEEGKVA
Sbjct: 64 QPYDKGSMGQIEKAIQMSDVGLTPNNDGQVIRLNIPPLTEERRKDLVKLASKMAEEGKVA 123
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ K +K +SED + L D+QK+TD++ KID + KEK+++ V
Sbjct: 124 IRNIRRDAIDDVRKQEKNSDISEDESRGLQDDIQKVTDQFTDKIDELLAAKEKDIMTV 181
>gi|172038505|ref|YP_001805006.1| ribosome recycling factor [Cyanothece sp. ATCC 51142]
gi|226749927|sp|B1X0Q1.1|RRF_CYAA5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|171699959|gb|ACB52940.1| ribosome recycling factor [Cyanothece sp. ATCC 51142]
Length = 182
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 90/178 (50%), Positives = 134/178 (75%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D+K M+++++ + +FN++RTGR+N ++LD++ VEYYG+ L +A I+TPD+++++I
Sbjct: 5 DLKENMQKSVEATQRSFNTIRTGRANASILDRVTVEYYGTETPLYQLANISTPDATTIMI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYDK S+ IEKAI SD+G+TPNNDG+VIRL +P LT ERRK+L K+ +K AEEGKVA
Sbjct: 65 QPYDKGSMGQIEKAIQMSDVGLTPNNDGQVIRLNIPPLTEERRKDLVKLASKMAEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ K +K +SED + L D+QK+TD++ KID + KEK+++ V
Sbjct: 125 IRNIRRDAIDDVRKQEKNSDISEDESRGLQDDIQKVTDQFTDKIDELLAAKEKDIMTV 182
>gi|154500382|ref|ZP_02038420.1| hypothetical protein BACCAP_04049 [Bacteroides capillosus ATCC
29799]
gi|150270887|gb|EDM98170.1| ribosome recycling factor [Pseudoflavonifractor capillosus ATCC
29799]
Length = 184
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 95/179 (53%), Positives = 135/179 (75%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+ A+M++T+D+V+++F SVR GR+N A+LDKI V+YYG P L + I++PD SL+
Sbjct: 6 KEFDAKMQKTVDVVKSDFASVRAGRANAAVLDKITVDYYGVPTPLNQVGGISSPDPRSLV 65
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D LK IEKAI +SDLG+ P NDG VIRL PQLT ERRK+L+K V K AE GKV
Sbjct: 66 IQPWDTKLLKDIEKAIQTSDLGINPQNDGRVIRLNFPQLTEERRKDLTKQVRKYAEAGKV 125
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RNIRRDA+ ++ ++K+ +++ED+ K+L +LQ LTD+ K+ID + ++KE EL+ V
Sbjct: 126 AIRNIRRDAMDKFKAMEKKSEITEDDRKELEKELQDLTDKRCKQIDELTEKKEAELMAV 184
>gi|425469034|ref|ZP_18848001.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Microcystis aeruginosa PCC 9701]
gi|389883904|emb|CCI35744.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Microcystis aeruginosa PCC 9701]
Length = 182
Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 93/178 (52%), Positives = 137/178 (76%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V+ M++T++ + FN++RTGR+N ++LD+I VEYYG LKS+A I+TPD++++ I
Sbjct: 5 EVQDHMQKTVESTQRGFNTIRTGRANASLLDRIMVEYYGMETPLKSLATISTPDATTIAI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D++S+ +IEKAI SD+G+TP+NDG+ IRL +P LTS+RRKEL K VAK AEEGKVA
Sbjct: 65 QPFDRTSMGAIEKAISLSDVGLTPSNDGQTIRLNIPPLTSDRRKELVKSVAKLAEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ A K +K ++SED +DL +QK TD+++ KI+ + KEK++L V
Sbjct: 125 IRNIRRDAIDAIRKQEKSHEISEDESRDLQDQVQKSTDKFIAKIEDLLATKEKDILTV 182
>gi|409992788|ref|ZP_11275959.1| ribosome recycling factor [Arthrospira platensis str. Paraca]
gi|291566938|dbj|BAI89210.1| ribosome recycling factor [Arthrospira platensis NIES-39]
gi|409936367|gb|EKN77860.1| ribosome recycling factor [Arthrospira platensis str. Paraca]
Length = 182
Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 91/178 (51%), Positives = 134/178 (75%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
DV+ M++ ++ +FN++RTGR+N ++LD+I VEYYGSP LKS+A I+TPD+S++ I
Sbjct: 5 DVENLMKKALESTGRSFNTIRTGRANASLLDRITVEYYGSPTPLKSLASISTPDASTITI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D++SL +IEKAI SD+G+TPNNDG V+RL +P LT RR+E K+ K AEEG+V+
Sbjct: 65 QPFDRNSLNNIEKAISMSDVGLTPNNDGSVVRLNIPPLTEARRQEFVKLAGKYAEEGRVS 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRN+RRDA+ + K +K +SED +DL +QKLTD+Y K+D + + KEK+++ V
Sbjct: 125 VRNVRRDAIDSVRKQEKSGDISEDESRDLQDQIQKLTDKYTAKVDELLEAKEKDIMTV 182
>gi|126657954|ref|ZP_01729107.1| ribosome releasing factor [Cyanothece sp. CCY0110]
gi|126620894|gb|EAZ91610.1| ribosome releasing factor [Cyanothece sp. CCY0110]
Length = 181
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 90/178 (50%), Positives = 134/178 (75%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D+K M+++++ + +FN++RTGR+N ++LD++ VEYYG+ L +A I+TPD+++++I
Sbjct: 4 DLKDNMQKSVEATQRSFNTIRTGRANASILDRVTVEYYGTETPLYQLANISTPDATTIMI 63
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYDK S+ IEKAI SD+G+TPNNDG VIRL +P LT ERRK+L K+ +K AEEGKVA
Sbjct: 64 QPYDKGSMGQIEKAIQMSDVGLTPNNDGNVIRLNIPPLTEERRKDLVKLASKMAEEGKVA 123
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ K +K +SED + L D+QK+TD++ +KID + KEK+++ V
Sbjct: 124 IRNIRRDAIDDVRKQEKNSDISEDESRGLQDDIQKVTDQFTEKIDDLLTAKEKDIMTV 181
>gi|428771727|ref|YP_007163517.1| ribosome recycling factor [Cyanobacterium aponinum PCC 10605]
gi|428686006|gb|AFZ55473.1| ribosome recycling factor [Cyanobacterium aponinum PCC 10605]
Length = 183
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 91/178 (51%), Positives = 136/178 (76%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+++ M ++++ + + N++RTGR+N ++LDKI V+YYG+ LKS+A I+TPD+++L+I
Sbjct: 6 EIQNLMLKSVEKTQQDLNTIRTGRANASLLDKIMVDYYGAETPLKSLANISTPDATTLMI 65
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+DK S+ +EKAI SD+G+TPNNDG++IRL +P LT+ERR+E K+ +K AEEGKVA
Sbjct: 66 QPFDKGSISLLEKAISMSDIGLTPNNDGQIIRLNIPPLTAERRQEFVKIASKYAEEGKVA 125
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ K +K ++SED +DL ++QK+TD+Y KID I K KEKEL +
Sbjct: 126 IRNIRRDAIDKVRKQEKASEISEDESRDLQDEIQKVTDKYTAKIDDILKVKEKELTNI 183
>gi|33863513|ref|NP_895073.1| ribosome recycling factor [Prochlorococcus marinus str. MIT 9313]
gi|39932089|sp|Q7V6C1.1|RRF_PROMM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|33640962|emb|CAE21420.1| Ribosome recycling factor [Prochlorococcus marinus str. MIT 9313]
Length = 182
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 91/179 (50%), Positives = 135/179 (75%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
+++K M ++++ + NF ++RTGR+NP++LD+I VEYYG+ LKS+A I+TPDS ++
Sbjct: 4 QELKDNMHKSVEATQRNFATIRTGRANPSLLDRINVEYYGTETPLKSLATISTPDSQTIA 63
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D S+ IEKAI +SDLG+TPNNDG++IR+ +P LT ERRKE K+ A+ AEEGKV
Sbjct: 64 IQPFDNGSMGLIEKAIATSDLGLTPNNDGKIIRINVPPLTEERRKEFCKLAARYAEEGKV 123
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RNIRRDA+ +KL+K+ +LS+D D +QKLTD ++ +I+ +KE ++LKV
Sbjct: 124 ALRNIRRDAIDKVKKLEKDAELSKDQSHDEQDGIQKLTDTFITEIEKYLAEKEADILKV 182
>gi|403383310|ref|ZP_10925367.1| ribosome recycling factor [Kurthia sp. JC30]
Length = 185
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 93/176 (52%), Positives = 131/176 (74%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K RM + ID + F S+R GR+N ++LD+I VEYYG+P L +A I+ P++ L+IQP
Sbjct: 10 KERMTKAIDALTRAFASIRAGRANASLLDRITVEYYGAPTPLNQMASISVPEARLLVIQP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+ L IEKAI+ SD+G+TP NDG VIRLT+P LT ERRK+LSK+V K+AEE KVA+R
Sbjct: 70 YDKTILGEIEKAILKSDIGITPTNDGNVIRLTIPALTEERRKDLSKLVKKEAEEAKVAIR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRRD ++K +K ++ED+++ D+QK+TD+Y+K+ID + +KEKE+L V
Sbjct: 130 NIRRDVNDDFKKAEKAGDITEDDLRGYGDDVQKITDDYIKQIDELTAEKEKEILSV 185
>gi|209526796|ref|ZP_03275317.1| ribosome recycling factor [Arthrospira maxima CS-328]
gi|209492757|gb|EDZ93091.1| ribosome recycling factor [Arthrospira maxima CS-328]
Length = 187
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 91/178 (51%), Positives = 134/178 (75%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
DV+ M++ ++ +FN++RTGR+N ++LD+I VEYYGSP LKS+A I+TPD+S++ I
Sbjct: 10 DVENLMKKALESTGRSFNTIRTGRANASLLDRITVEYYGSPTPLKSLASISTPDASTITI 69
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D++SL +IEKAI SD+G+TPNNDG V+RL +P LT RR+E K+ K AEEG+V+
Sbjct: 70 QPFDRNSLNNIEKAISMSDVGLTPNNDGSVVRLNIPPLTEARRQEFVKLAGKYAEEGRVS 129
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRNIRRDA+ + K +K +SED +D+ +QKLTD+Y K+D + + KEK+++ V
Sbjct: 130 VRNIRRDAIDSVRKQEKNGDISEDESRDIQDKIQKLTDKYTAKVDELLEAKEKDIMTV 187
>gi|302837099|ref|XP_002950109.1| hypothetical protein VOLCADRAFT_80962 [Volvox carteri f.
nagariensis]
gi|300264582|gb|EFJ48777.1| hypothetical protein VOLCADRAFT_80962 [Volvox carteri f.
nagariensis]
Length = 266
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 91/180 (50%), Positives = 135/180 (75%), Gaps = 4/180 (2%)
Query: 97 EKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSL 156
+KD RM++ +++V FN++RTGR+NPA+LDKI V+Y+G+P LK + + PDS +L
Sbjct: 91 KKDADERMKKCLNVVADGFNTIRTGRANPAILDKITVDYFGAPTPLKQMGAVTVPDSQTL 150
Query: 157 LIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
+I P+D+S+LK IE+AI SD+G+ PNNDGE IRL +P +T ERRK+L+K V+K E+GK
Sbjct: 151 MIAPFDRSTLKDIERAIQESDIGINPNNDGERIRLVMPPMTQERRKDLAKQVSKMTEDGK 210
Query: 217 VAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VAVRN+R+DA+K +K++ L +D+ K L D+QKLTD Y+KK+D + K K E++K+
Sbjct: 211 VAVRNVRKDAMKKVDKVE----LPKDDKKALEDDIQKLTDLYVKKLDDMAKAKTDEVMKL 266
>gi|423066834|ref|ZP_17055624.1| ribosome recycling factor [Arthrospira platensis C1]
gi|406711599|gb|EKD06799.1| ribosome recycling factor [Arthrospira platensis C1]
Length = 193
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 91/178 (51%), Positives = 134/178 (75%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
DV+ M++ ++ +FN++RTGR+N ++LD+I VEYYGSP LKS+A I+TPD+S++ I
Sbjct: 16 DVENLMKKALESTGRSFNTIRTGRANASLLDRITVEYYGSPTPLKSLASISTPDASTITI 75
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D++SL +IEKAI SD+G+TPNNDG V+RL +P LT RR+E K+ K AEEG+V+
Sbjct: 76 QPFDRNSLNNIEKAISMSDVGLTPNNDGSVVRLNIPPLTEARRQEFVKLAGKYAEEGRVS 135
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRNIRRDA+ + K +K +SED +D+ +QKLTD+Y K+D + + KEK+++ V
Sbjct: 136 VRNIRRDAIDSVRKQEKNGDISEDESRDIQDKIQKLTDKYTAKVDELLEAKEKDIMTV 193
>gi|428773325|ref|YP_007165113.1| ribosome recycling factor [Cyanobacterium stanieri PCC 7202]
gi|428687604|gb|AFZ47464.1| ribosome recycling factor [Cyanobacterium stanieri PCC 7202]
Length = 183
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 91/178 (51%), Positives = 134/178 (75%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D+KA M+++++ + +FN++RTGR+N ++LDKI V+YYG+ LK+IA I+TPD++++LI
Sbjct: 6 DLKANMQKSVERTQQDFNTIRTGRANASLLDKIMVDYYGADTPLKTIAGISTPDATTILI 65
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D+ S+ IEKAI SD+G+TPNNDG+VIRL +P LT+ERR+E K+ K AE+GKV+
Sbjct: 66 QPFDRGSMAQIEKAISLSDIGLTPNNDGQVIRLNIPPLTAERRQEFVKLAGKYAEDGKVS 125
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRN RRDA+ K +K +SED +DL ++QK+TD + KID + KEKEL +
Sbjct: 126 VRNHRRDAIDKVRKQEKNSDISEDESRDLQDEIQKVTDMFTGKIDELLAVKEKELTSI 183
>gi|119513540|ref|ZP_01632559.1| ribosome releasing factor [Nodularia spumigena CCY9414]
gi|119461805|gb|EAW42823.1| ribosome releasing factor [Nodularia spumigena CCY9414]
Length = 182
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/173 (53%), Positives = 130/173 (75%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M++T++ + FN++RTGR+N ++LDK+ V+YYGSP LKS+A I+TPD+S++LIQPYDK
Sbjct: 10 MQKTVEATQRAFNTIRTGRANASLLDKVSVDYYGSPTPLKSLANISTPDASTILIQPYDK 69
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
SL +EKAI SD+G+TP+NDG VIRL +P LTS+RRKE K+ +K AEEG+VA+RNIR
Sbjct: 70 GSLNVVEKAISLSDVGLTPSNDGSVIRLNIPPLTSDRRKEFVKMASKYAEEGRVAIRNIR 129
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RD K +K ++SED KD LQKLT++Y +ID + +KEK++ V
Sbjct: 130 RDVQDTIRKEEKASEISEDESKDQQDQLQKLTNKYTARIDDLLAEKEKDISTV 182
>gi|170077573|ref|YP_001734211.1| ribosome recycling factor [Synechococcus sp. PCC 7002]
gi|238689043|sp|B1XJ13.1|RRF_SYNP2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|169885242|gb|ACA98955.1| ribosome recycling factor [Synechococcus sp. PCC 7002]
Length = 182
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/178 (52%), Positives = 133/178 (74%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+++ M++TI+ + +FN++RTGR++ ++LD+I VEYYG+ LKS+A I+TPDSS+++I
Sbjct: 5 ELRENMQKTIEATQRSFNTLRTGRASASLLDRITVEYYGAETPLKSLASISTPDSSTIMI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D+ SL +E+AI SDLG+TPNNDG IRL +P LT ERR+EL K K AEEGKVA
Sbjct: 65 QPFDRGSLSDVERAISMSDLGLTPNNDGTNIRLNIPPLTKERRQELVKTAGKLAEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ K +K +SED + L D+QK+TDE+ KID + K KEK+++ V
Sbjct: 125 LRNIRRDAIDDVRKQEKNSDISEDESRSLQDDIQKVTDEFTTKIDDLLKIKEKDIMTV 182
>gi|124022470|ref|YP_001016777.1| ribosome recycling factor [Prochlorococcus marinus str. MIT 9303]
gi|123962756|gb|ABM77512.1| Ribosome recycling factor [Prochlorococcus marinus str. MIT 9303]
Length = 173
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 91/173 (52%), Positives = 131/173 (75%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M ++++ + NF ++RTGR+NP++LD+I VEYYG+ LKS+A I+TPDS ++ IQP+D
Sbjct: 1 MHKSVEATQRNFATIRTGRANPSLLDRINVEYYGTETPLKSLATISTPDSQTIAIQPFDN 60
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
S+ IEKAI +SDLG+TPNNDG++IR+ +P LT ERRKE K+ AK AEEGKVA+RNIR
Sbjct: 61 GSMGLIEKAIATSDLGLTPNNDGKIIRINVPPLTEERRKEFCKLAAKYAEEGKVALRNIR 120
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RDA+ +KL+K+ +LS+D D +QKLTD ++ +I+ +KE ++LKV
Sbjct: 121 RDAIDKVKKLEKDAELSKDQSHDEQDGIQKLTDTFITEIEKYLAEKEADILKV 173
>gi|425462488|ref|ZP_18841962.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Microcystis aeruginosa PCC 9808]
gi|159028125|emb|CAO89732.1| frr [Microcystis aeruginosa PCC 7806]
gi|389824464|emb|CCI26564.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Microcystis aeruginosa PCC 9808]
Length = 182
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 92/178 (51%), Positives = 137/178 (76%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V+ M++T++ + FN++RTGR+N ++LD+I VEYYG LKS+A I+TPD++++ I
Sbjct: 5 EVQDHMQKTVESTQRAFNTIRTGRANASLLDRIVVEYYGMETPLKSLATISTPDATTIAI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D++S+ +IEKAI SD+G+TP+NDG+ IRL +P LTS+RRKEL K+ AK AEEGKVA
Sbjct: 65 QPFDRTSMGAIEKAISLSDVGLTPSNDGQTIRLNIPPLTSDRRKELVKLAAKLAEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRNIRRDA+ A K +K ++SED +DL +QK TD+++ KI+ + KEK+++ V
Sbjct: 125 VRNIRRDAIDAIRKQEKSHEISEDESRDLQDQVQKSTDKFIAKIEDLLTTKEKDIMTV 182
>gi|317969623|ref|ZP_07971013.1| ribosome recycling factor [Synechococcus sp. CB0205]
Length = 179
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 94/178 (52%), Positives = 137/178 (76%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D++A M +++D + FN++RTGR+N ++LDKI+VEYYG+ LKS+A I+TPDSS++ +
Sbjct: 2 DLEASMRKSVDSTQRTFNTIRTGRANASLLDKIQVEYYGADTPLKSLATISTPDSSTIQL 61
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D SSL IEKAI SDLG+T NNDG++IR+ +P LT +RRKEL K+ AK AEEGKVA
Sbjct: 62 QPFDGSSLGLIEKAISMSDLGLTCNNDGKLIRINIPPLTEDRRKELCKLAAKYAEEGKVA 121
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RN+RRDA+ +K +KE + SED +D +QKLTD+++ +I+ + +KE ++LKV
Sbjct: 122 LRNVRRDAIDKVKKQEKEGEFSEDQSRDEQDKVQKLTDKFIAEIEKLLAEKEADILKV 179
>gi|412988542|emb|CCO17878.1| ribosome recycling factor [Bathycoccus prasinos]
Length = 254
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 95/178 (53%), Positives = 130/178 (73%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D RME+ ++++ NF++VRTGR+NP MLD+IEV+YYG+ LKS++ N D+ +L+I
Sbjct: 77 DCMDRMEKAMEVMTDNFSTVRTGRANPNMLDRIEVDYYGAMTPLKSLSNTNNLDAQTLVI 136
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+DK +LK IEKAIV SDLG+TP+NDG VIRL +P LT+ERRKEL+K V+K EEGKVA
Sbjct: 137 QPFDKGALKEIEKAIVRSDLGITPSNDGSVIRLVVPPLTAERRKELTKQVSKLGEEGKVA 196
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RN+RRDA+ +K++ +K L ED ++ LT Y+KK + K KEKEL V
Sbjct: 197 LRNVRRDAMTKIKKMKTDKTLGEDEFASFEKKIEDLTTSYVKKTEDAVKAKEKELTTV 254
>gi|427734019|ref|YP_007053563.1| ribosome recycling factor [Rivularia sp. PCC 7116]
gi|427369060|gb|AFY53016.1| ribosome recycling factor [Rivularia sp. PCC 7116]
Length = 182
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 94/178 (52%), Positives = 133/178 (74%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ ++ M+++I+ + +FN++RTGR+N ++LDKI V YY LKS+A I TPD++++ I
Sbjct: 5 EAESTMKKSIEATQRSFNTIRTGRANSSLLDKIMVNYYDVDTPLKSLANIGTPDATTITI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYD+SSL +IEKAI SD+G+TPNNDG +IRL +P LT ERRKE K+ AK AEEG+VA
Sbjct: 65 QPYDQSSLGNIEKAISMSDVGLTPNNDGSIIRLNIPPLTEERRKEFVKLAAKYAEEGRVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDAL K +K ++SED +DL ++QKLT++Y KID + +KEKE+ V
Sbjct: 125 IRNIRRDALDTIRKQEKNTEISEDESRDLQDEVQKLTNKYTSKIDDLLGEKEKEITTV 182
>gi|357039336|ref|ZP_09101130.1| Ribosome-recycling factor [Desulfotomaculum gibsoniae DSM 7213]
gi|355358235|gb|EHG06003.1| Ribosome-recycling factor [Desulfotomaculum gibsoniae DSM 7213]
Length = 183
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/178 (51%), Positives = 133/178 (74%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + M++T+++V F S+R GR+ PA+LDKI V YYG+P + +A I TP++ L+I
Sbjct: 6 DTEKNMKKTVEVVNKEFASLRAGRATPALLDKIMVTYYGTPTPINQLANITTPEARLLVI 65
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+DK+++ IEKAI+ SDLG+TP +DG +IRL +PQLT ERR EL KV+ K+AEEG+VA
Sbjct: 66 QPWDKTAMPEIEKAILKSDLGITPASDGNIIRLAVPQLTKERRAELVKVIKKKAEEGRVA 125
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRN+RRDA + QK +SED ++ L ++QKLTD+Y+K+ID+++ KEKE+L V
Sbjct: 126 VRNLRRDANDGLKSQQKNGDISEDELRRLQDEVQKLTDKYIKEIDALFAAKEKEILTV 183
>gi|425436549|ref|ZP_18816984.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Microcystis aeruginosa PCC 9432]
gi|389678710|emb|CCH92453.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Microcystis aeruginosa PCC 9432]
Length = 182
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 91/178 (51%), Positives = 137/178 (76%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V+ M++T++ + FN++RTGR+N ++LD+I VEYYG LKS+A I+TPD++++ I
Sbjct: 5 EVQDHMQKTVESTQRGFNTIRTGRANASLLDRIVVEYYGMETPLKSLATISTPDATTIAI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D+SS+ +IEKAI SD+G+TP+NDG+ IRL +P LTS+RRKEL K+ AK +EEGKVA
Sbjct: 65 QPFDRSSMGAIEKAISLSDVGLTPSNDGQTIRLNIPPLTSDRRKELVKLAAKLSEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ A K +K ++SED +DL +QK TD+++ KI+ + KEK+++ V
Sbjct: 125 IRNIRRDAIDAIRKQEKSHEISEDESRDLQDQVQKSTDKFIAKIEDLLTTKEKDIMTV 182
>gi|425442269|ref|ZP_18822523.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Microcystis aeruginosa PCC 9717]
gi|389716805|emb|CCH99010.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Microcystis aeruginosa PCC 9717]
Length = 182
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 90/178 (50%), Positives = 138/178 (77%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V+ M++T++ + FN++RTGR+N ++LD+I VEYYG LKS+A I+TPD++++ I
Sbjct: 5 EVQDHMQKTVESTQRAFNTIRTGRANASLLDRIVVEYYGMETPLKSLATISTPDATTIAI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D++S+ +IEKAI SD+G+TP+NDG++IRL +P LTS+RRKEL K+ AK +EEGKVA
Sbjct: 65 QPFDRTSMGAIEKAISLSDVGLTPSNDGQIIRLNIPPLTSDRRKELVKLAAKLSEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ A K +K ++SED +DL +QK TD+++ KI+ + KEK+++ V
Sbjct: 125 IRNIRRDAIDAIRKQEKSHEISEDESRDLQDQVQKSTDKFIAKIEDLLTTKEKDIMTV 182
>gi|166365795|ref|YP_001658068.1| ribosome recycling factor [Microcystis aeruginosa NIES-843]
gi|425466445|ref|ZP_18845743.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Microcystis aeruginosa PCC 9809]
gi|189044061|sp|B0JKT7.1|RRF_MICAN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|166088168|dbj|BAG02876.1| ribosome releasing factor [Microcystis aeruginosa NIES-843]
gi|389831005|emb|CCI26571.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Microcystis aeruginosa PCC 9809]
Length = 182
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 91/178 (51%), Positives = 138/178 (77%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V+ +M++T++ + FN++RTGR+N ++LD+I VEYYG LKS+A I+TPD++++ I
Sbjct: 5 EVQDQMQKTVESTQRAFNTIRTGRANASLLDRIVVEYYGMETPLKSLATISTPDATTIAI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D++S+ +IEKAI SD+G+TP+NDG+ IRL +P LTS+RRKEL K+ AK AEEGKVA
Sbjct: 65 QPFDRTSMGAIEKAISLSDVGLTPSNDGQTIRLNIPPLTSDRRKELVKLAAKLAEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ A K +K ++SED +DL +QK TD+++ KI+ + KEK+++ V
Sbjct: 125 IRNIRRDAIDAIRKREKGHEISEDESRDLQDQVQKSTDKFIAKIEDLLTTKEKDIMTV 182
>gi|323701848|ref|ZP_08113518.1| ribosome recycling factor [Desulfotomaculum nigrificans DSM 574]
gi|333923698|ref|YP_004497278.1| ribosome-recycling factor [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|323533152|gb|EGB23021.1| ribosome recycling factor [Desulfotomaculum nigrificans DSM 574]
gi|333749259|gb|AEF94366.1| Ribosome-recycling factor [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 184
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 93/173 (53%), Positives = 133/173 (76%), Gaps = 1/173 (0%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M++T+++VR F S+R GR+ PA+LDK+ V YYG+P L +A I+ P++ SL+IQP+DK
Sbjct: 13 MKKTVEVVRKEFASLRAGRATPALLDKVVVSYYGTPTPLNQLANISVPEARSLVIQPWDK 72
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
S+L IE+AI+ SDLG+TP +DG VIRLT+PQLT ERR EL KVV K+AEEG+VA+RNIR
Sbjct: 73 SALPEIERAILKSDLGITPTSDGTVIRLTIPQLTQERRAELVKVVKKKAEEGRVAIRNIR 132
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
R+ + + QKE + ED VK D+QK+TD+++K+ID + K KE+E+++V
Sbjct: 133 REVIDQIKAKQKE-GVPEDEVKRGQEDMQKITDKFIKEIDEMVKSKEQEIMQV 184
>gi|318041138|ref|ZP_07973094.1| ribosome recycling factor [Synechococcus sp. CB0101]
Length = 179
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 94/178 (52%), Positives = 137/178 (76%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+++A M +++D + FN++RTGR+N ++LDKI+VEYYG+ LKS+A I+TPDSS++ +
Sbjct: 2 ELEASMRKSVDSTQRTFNTIRTGRANASLLDKIQVEYYGADTPLKSLATISTPDSSTIQL 61
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D SSL IEKAI SDLG+T NNDG+VIR+ +P LT +RRK+L K+ AK AEEGKVA
Sbjct: 62 QPFDASSLSLIEKAISMSDLGLTCNNDGKVIRINIPPLTEDRRKDLCKLAAKYAEEGKVA 121
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ +K +KE + SED +D +QKLTD+++ +I+ + +KE ++LKV
Sbjct: 122 LRNIRRDAIDKVKKQEKEGEFSEDQSRDEQDKVQKLTDKFIAEIEKLLAEKEADILKV 179
>gi|121533727|ref|ZP_01665554.1| ribosome recycling factor [Thermosinus carboxydivorans Nor1]
gi|121307718|gb|EAX48633.1| ribosome recycling factor [Thermosinus carboxydivorans Nor1]
Length = 186
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 90/174 (51%), Positives = 133/174 (76%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++ ++++R F S+R GR+ P++LDK+ V+YYG P + +A I+ P+ ++IQP++
Sbjct: 13 KMKKALEVLRKEFASLRAGRATPSLLDKVTVDYYGMPSPINQVANISVPEPRLIVIQPWE 72
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS L IEKAI+ SDLG+TP NDG VIRL++PQLT +RR EL KVV K+AEE +VA+RN+
Sbjct: 73 KSMLAPIEKAILKSDLGLTPTNDGNVIRLSIPQLTQQRRSELVKVVHKKAEEARVAIRNL 132
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA A +KL+KEK++SED K D+QKLTD+Y+K++D + KEKE+++V
Sbjct: 133 RRDANDAIKKLEKEKQVSEDEAKKAQEDMQKLTDKYIKEVDQVMAAKEKEIMEV 186
>gi|425449975|ref|ZP_18829807.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Microcystis aeruginosa PCC 7941]
gi|389769386|emb|CCI05755.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Microcystis aeruginosa PCC 7941]
Length = 182
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 91/178 (51%), Positives = 137/178 (76%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V+ M++T++ + FN++RTGR+N ++LD+I VEYYG LKS+A I+TPD++++ I
Sbjct: 5 EVQDHMQKTVESTQRAFNTIRTGRANASLLDRIVVEYYGMETPLKSLATISTPDATTIAI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D+SS+ +IEKAI SD+G+TP+NDG+ IRL +P LTS+RRKEL K+ AK +EEGKVA
Sbjct: 65 QPFDRSSMGAIEKAISLSDVGLTPSNDGQTIRLNIPPLTSDRRKELVKLAAKLSEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ A K +K ++SED +DL +QK TD+++ KI+ + KEK+++ V
Sbjct: 125 IRNIRRDAIDAIRKQEKSHEISEDESRDLQDQVQKSTDKFIAKIEDLLTTKEKDIMTV 182
>gi|443664299|ref|ZP_21133403.1| ribosome recycling factor [Microcystis aeruginosa DIANCHI905]
gi|443331606|gb|ELS46254.1| ribosome recycling factor [Microcystis aeruginosa DIANCHI905]
Length = 173
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 91/173 (52%), Positives = 134/173 (77%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M++T++ + FN++RTGR+N ++LD+I VEYYG LKS+A I+TPD++++ IQP+D+
Sbjct: 1 MQKTVESTQRAFNTIRTGRANASLLDRIVVEYYGMETPLKSLATISTPDATTIAIQPFDR 60
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
+S+ +IEKAI SD+G+TP+NDG+ IRL +P LTS+RRKEL K+ AK AEEGKVAVRNIR
Sbjct: 61 TSMGAIEKAISLSDVGLTPSNDGQTIRLNIPPLTSDRRKELVKLAAKLAEEGKVAVRNIR 120
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RDA+ A K +K ++SED +DL +QK TD+++ KI+ + KEK+++ V
Sbjct: 121 RDAIDAIRKQEKSHEISEDESRDLQDQVQKSTDKFIAKIEDLLTTKEKDIMTV 173
>gi|72383689|ref|YP_293044.1| ribosome recycling factor [Prochlorococcus marinus str. NATL2A]
gi|123620292|sp|Q46GQ5.1|RRF_PROMT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|72003539|gb|AAZ59341.1| ribosome recycling factor [Prochlorococcus marinus str. NATL2A]
Length = 182
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 94/179 (52%), Positives = 132/179 (73%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
+++K M ++I+ + NFN++RTGR+N ++LD+I VEYYG+ LKS+A I TPDS ++
Sbjct: 4 QELKTTMSKSIEAAQRNFNTIRTGRANTSLLDRISVEYYGAETPLKSLATITTPDSQTIA 63
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D SL SIEKAI +SDLG TPNNDG++IR+ +P LT ERRKE K+ +K AEEGKV
Sbjct: 64 IQPFDLGSLASIEKAIATSDLGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKV 123
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RNIRR+A+ +K +K+ LSED +D +QK TD ++K I+ +KE E+LKV
Sbjct: 124 ALRNIRREAIDRVKKSEKDGDLSEDQSRDEQETIQKETDNFIKDIEKKLSEKEAEILKV 182
>gi|422302477|ref|ZP_16389840.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Microcystis aeruginosa PCC 9806]
gi|389788349|emb|CCI16131.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Microcystis aeruginosa PCC 9806]
Length = 182
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 90/178 (50%), Positives = 137/178 (76%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V+ M++T++ + FN++RTGR+N ++LD+I VEYYG LKS+A I+TPD++++ I
Sbjct: 5 EVQDHMQKTVESTQRGFNTIRTGRANASLLDRIVVEYYGMETPLKSLATISTPDATTIAI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D++S+ +IEKAI SD+G+TP+NDG+ IRL +P LTS+RRKEL K+ AK +EEGKVA
Sbjct: 65 QPFDRTSMGAIEKAISLSDVGLTPSNDGQTIRLNIPPLTSDRRKELVKLAAKLSEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ A K +K ++SED +DL +QK TD+++ KI+ + KEK+++ V
Sbjct: 125 IRNIRRDAIDAIRKQEKSHEISEDESRDLQDQVQKSTDKFIAKIEDLLTTKEKDIMTV 182
>gi|390438974|ref|ZP_10227399.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Microcystis sp. T1-4]
gi|389837604|emb|CCI31523.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Microcystis sp. T1-4]
Length = 182
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 91/178 (51%), Positives = 137/178 (76%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V+ M++T++ + FN++RTGR+N ++LD+I VEYYG LKS+A I+TPD++++ I
Sbjct: 5 EVQDHMQKTVESTQRAFNTIRTGRANASLLDRIVVEYYGMETPLKSLATISTPDATTIAI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D++S+ +IEKAI SD+G+TP+NDG+ IRL +P LTS+RRK+L K+ AK AEEGKVA
Sbjct: 65 QPFDRTSMGAIEKAISLSDVGLTPSNDGQTIRLNIPPLTSDRRKDLVKLAAKLAEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRNIRRDA+ A K +K ++SED +DL +QK TD+++ KI+ + KEK+++ V
Sbjct: 125 VRNIRRDAIDAIRKQEKSHEISEDESRDLQDQVQKSTDKFIAKIEDLLATKEKDIMTV 182
>gi|376003453|ref|ZP_09781263.1| ribosome recycling factor [Arthrospira sp. PCC 8005]
gi|375328110|emb|CCE17016.1| ribosome recycling factor [Arthrospira sp. PCC 8005]
Length = 173
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 131/173 (75%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M++ ++ +FN++RTGR+N ++LD+I VEYYGSP LKS+A I+TPD+S++ IQP+D+
Sbjct: 1 MKKALESTGRSFNTIRTGRANASLLDRITVEYYGSPTPLKSLASISTPDASTITIQPFDR 60
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
+SL +IEKAI SD+G+TPNNDG V+RL +P LT RR+E K+ K AEEG+V+VRNIR
Sbjct: 61 NSLNNIEKAISMSDVGLTPNNDGSVVRLNIPPLTEARRQEFVKLAGKYAEEGRVSVRNIR 120
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RDA+ + K +K +SED +D+ +QKLTD+Y K+D + + KEK+++ V
Sbjct: 121 RDAIDSVRKQEKNGDISEDESRDIQDKIQKLTDKYTAKVDELLEAKEKDIMTV 173
>gi|334117693|ref|ZP_08491784.1| Ribosome-recycling factor [Microcoleus vaginatus FGP-2]
gi|333460802|gb|EGK89410.1| Ribosome-recycling factor [Microcoleus vaginatus FGP-2]
Length = 182
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 88/178 (49%), Positives = 134/178 (75%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + M++ ++ + +FN++RTGR+N ++LD++ V+YYGSP +KS+A I TPD++++ I
Sbjct: 5 DAEDHMQKAVEATQRSFNTIRTGRANASLLDRVMVDYYGSPTPIKSLANIGTPDATTITI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D+++L SIEKAI SD+G+ PNNDG VIRL +P LTS+RR+E K+ +K AEEGKVA
Sbjct: 65 QPFDRTALNSIEKAISLSDVGLVPNNDGSVIRLNIPPLTSDRRQEFVKMASKFAEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ + K +K +S+D +DL +QKLTD+Y+ KI+ + KEK++ V
Sbjct: 125 IRNIRRDAVDSIRKQEKSSDISKDESRDLQDKIQKLTDKYIAKIEEVLAAKEKDITTV 182
>gi|254430178|ref|ZP_05043881.1| ribosome recycling factor [Cyanobium sp. PCC 7001]
gi|197624631|gb|EDY37190.1| ribosome recycling factor [Cyanobium sp. PCC 7001]
Length = 179
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 93/178 (52%), Positives = 134/178 (75%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D++A M +++D NFN++RTGR+NP++LDKI VEYYG+ LKS+A ++TPDS ++ I
Sbjct: 2 DLEASMRKSVDAALRNFNTIRTGRANPSLLDKISVEYYGAETPLKSLASLSTPDSQTIQI 61
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D ++ IEKAI SDLG+T NNDG VIR+ +P LT +RRKEL K+ AK AEEGKVA
Sbjct: 62 QPFDTGAMGLIEKAIAMSDLGLTCNNDGRVIRINIPPLTEDRRKELCKIAAKYAEEGKVA 121
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RN RRD + +K +K+ +LSED +D +QKLTD+++++++ K+KE E+LKV
Sbjct: 122 LRNNRRDGIDRIKKQEKDGELSEDQSRDEQDKVQKLTDKFIEELEKHLKEKEAEILKV 179
>gi|428320921|ref|YP_007118803.1| Ribosome-recycling factor [Oscillatoria nigro-viridis PCC 7112]
gi|428244601|gb|AFZ10387.1| Ribosome-recycling factor [Oscillatoria nigro-viridis PCC 7112]
Length = 182
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 88/178 (49%), Positives = 133/178 (74%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + M++ ++ + +FN++RTGR+N ++LD++ V+YYGSP +KS+A I TPD++++ I
Sbjct: 5 DAEDHMQKAVEATQRSFNTIRTGRANASLLDRVMVDYYGSPTPIKSLANIGTPDATTITI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D+++L SIEKAI SD+G+ PNNDG VIRL +P LTS+RR+E K+ K AEEGKVA
Sbjct: 65 QPFDRTALNSIEKAISLSDVGLVPNNDGSVIRLNIPPLTSDRRQEFVKMAGKFAEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ + K +K +S+D +DL +QKLTD+Y+ KI+ + KEK++ V
Sbjct: 125 IRNIRRDAVDSIRKQEKSSDISKDESRDLQDKIQKLTDKYVAKIEEVLAAKEKDITTV 182
>gi|425444773|ref|ZP_18824816.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Microcystis aeruginosa PCC 9443]
gi|425454055|ref|ZP_18833802.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Microcystis aeruginosa PCC 9807]
gi|389735425|emb|CCI01077.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Microcystis aeruginosa PCC 9443]
gi|389805363|emb|CCI14855.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Microcystis aeruginosa PCC 9807]
Length = 182
Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 90/178 (50%), Positives = 137/178 (76%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V+ M++T++ + FN++RTGR+N ++LD+I VEYYG LKS+A I+TPD++++ I
Sbjct: 5 EVQDHMQKTVESTQRAFNTIRTGRANASLLDRIVVEYYGMETPLKSLATISTPDATTIAI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D++S+ +IEKAI SD+G+TP+NDG+ IRL +P LTS+RRKEL K+ AK +EEGKVA
Sbjct: 65 QPFDRTSMGAIEKAISLSDVGLTPSNDGQTIRLNIPPLTSDRRKELVKLAAKLSEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ A K +K ++SED +DL +QK TD+++ KI+ + KEK+++ V
Sbjct: 125 IRNIRRDAIDAIRKQEKSHEISEDESRDLQDQVQKSTDKFIAKIEDLLTTKEKDIMTV 182
>gi|352094730|ref|ZP_08955901.1| Ribosome-recycling factor [Synechococcus sp. WH 8016]
gi|351681070|gb|EHA64202.1| Ribosome-recycling factor [Synechococcus sp. WH 8016]
Length = 182
Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 91/178 (51%), Positives = 133/178 (74%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D++A M ++++ + NFN++RTGR+NP++LD+I VEYYG+ LKS+A ++TPDS ++ +
Sbjct: 5 DLEANMRKSVEATQRNFNTIRTGRANPSLLDRINVEYYGADTPLKSLASLSTPDSQTIAV 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D SL IEKAI +SDLG TPNNDG+VIR+ +P LT ERRKE K+ AK +EEGKVA
Sbjct: 65 QPFDMGSLALIEKAIATSDLGFTPNNDGKVIRINVPPLTEERRKEFCKLAAKYSEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+R++RRDA+ +K +KE +LSED +D +QK TD ++ +++ KE E+LKV
Sbjct: 125 LRSVRRDAIDKIKKQEKEGELSEDQSRDEQDKVQKTTDRFIAELEKHLADKEVEILKV 182
>gi|159903064|ref|YP_001550408.1| ribosome recycling factor [Prochlorococcus marinus str. MIT 9211]
gi|226749934|sp|A9BEE4.1|RRF_PROM4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|159888240|gb|ABX08454.1| Ribosome recycling factor [Prochlorococcus marinus str. MIT 9211]
Length = 182
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 93/181 (51%), Positives = 137/181 (75%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I K+++ M ++++ + NFN++RTGR+N ++LD++ VEYYG+ LKS+A I+TPDS +
Sbjct: 2 ITKELEQNMRKSVEAAQRNFNTIRTGRANTSLLDRLTVEYYGADTPLKSLATISTPDSQT 61
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
+ IQP+D SSL IEK+I SDLG TPNNDG++IR+ +P LT ERRKE K+ +K AEEG
Sbjct: 62 ISIQPFDLSSLVLIEKSIAMSDLGFTPNNDGKIIRINIPPLTEERRKEFCKLASKYAEEG 121
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVA+RNIRRDA++ +K +KE ++SED +D ++QKLTD ++ +I+ KE+E+LK
Sbjct: 122 KVALRNIRRDAIERIKKSEKESEISEDQSRDEQDNVQKLTDRFITEIEKNLSDKEQEILK 181
Query: 276 V 276
V
Sbjct: 182 V 182
>gi|332653365|ref|ZP_08419110.1| ribosome recycling factor [Ruminococcaceae bacterium D16]
gi|332518511|gb|EGJ48114.1| ribosome recycling factor [Ruminococcaceae bacterium D16]
Length = 184
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/174 (54%), Positives = 132/174 (75%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +TI++V+ NF SVR GR+N +LD+I VEYYG+P L +A I++PD +L +QP+D
Sbjct: 11 KMIKTIEVVKANFASVRAGRANAGVLDRIMVEYYGTPTPLNQVAAISSPDPRTLTVQPWD 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
S LK+IEKAI +SDLG+ P NDG +IRL PQLT ERRKEL+K V K +EEGKVA+RNI
Sbjct: 71 ASLLKAIEKAIQTSDLGINPQNDGRLIRLAFPQLTEERRKELTKQVRKYSEEGKVALRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA+ ++K +K +++ED++K+L +LQ LTD+ K ID + +KE+EL+ V
Sbjct: 131 RRDAMDEFKKKKKASEITEDDLKELEKELQDLTDKRCKDIDELTVKKEQELMAV 184
>gi|433445999|ref|ZP_20410130.1| ribosome recycling factor [Anoxybacillus flavithermus TNO-09.006]
gi|432000744|gb|ELK21636.1| ribosome recycling factor [Anoxybacillus flavithermus TNO-09.006]
Length = 183
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 92/178 (51%), Positives = 134/178 (75%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ K +M++ + ++R GR+NPA+L+KI V+YYG P + +A I P++ L+I
Sbjct: 6 NAKEKMDKAVQAFSRELATIRAGRANPALLEKITVDYYGMPTPIIQLASIQVPEARLLVI 65
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYDKS LK IEKAI++SDLG+TP+NDG VIR+++P LT ERR+EL K+V K AEE KVA
Sbjct: 66 QPYDKSVLKEIEKAILASDLGLTPSNDGSVIRISIPPLTEERRRELVKLVKKYAEEAKVA 125
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRNIRRDA +KL+K +++ED ++ + D+QKLTD+++ KID+I K+KEKE+++V
Sbjct: 126 VRNIRRDANDELKKLEKNGEITEDELRGYTEDIQKLTDDHIAKIDAITKEKEKEVMEV 183
>gi|212639532|ref|YP_002316052.1| ribosome recycling factor [Anoxybacillus flavithermus WK1]
gi|212561012|gb|ACJ34067.1| Ribosome recycling factor [Anoxybacillus flavithermus WK1]
Length = 183
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 92/178 (51%), Positives = 134/178 (75%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ K +M++ + ++R GR+NPA+L+KI V+YYG P + +A I P++ L+I
Sbjct: 6 NAKEKMDKAVQAFSRELATIRAGRANPALLEKITVDYYGMPTPIIQLAGIQVPEARLLVI 65
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYDKS LK IEKAI++SDLG+TP+NDG VIR+++P LT ERR+EL K+V K AEE KVA
Sbjct: 66 QPYDKSVLKEIEKAILASDLGLTPSNDGSVIRISIPPLTEERRRELVKLVKKYAEEAKVA 125
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRNIRRDA +KL+K +++ED ++ + D+QKLTD+++ KID+I K+KEKE+++V
Sbjct: 126 VRNIRRDANDELKKLEKNGEITEDELRGYTEDIQKLTDDHIAKIDAITKEKEKEVMEV 183
>gi|167750047|ref|ZP_02422174.1| hypothetical protein EUBSIR_01015 [Eubacterium siraeum DSM 15702]
gi|167657068|gb|EDS01198.1| ribosome recycling factor [Eubacterium siraeum DSM 15702]
gi|291530445|emb|CBK96030.1| ribosome recycling factor [Eubacterium siraeum 70/3]
Length = 184
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 88/176 (50%), Positives = 132/176 (75%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +M + + V T + S+R GR+NPA+LDK+ V+YYG P + ++A + ++ L+I P
Sbjct: 9 KDKMGKCVAAVETEYASIRAGRANPAVLDKVTVDYYGVPTQINAMAAVAVSEARVLVITP 68
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
+D S+LKSIEKAI++SD+G+TP NDG+ IR+T PQLT ERRKEL K V K AEEGKVAVR
Sbjct: 69 WDASTLKSIEKAILASDIGITPTNDGKAIRITFPQLTEERRKELCKQVKKIAEEGKVAVR 128
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N+RRDA++ ++ ++K +++ED++K+ D+QKLTD+Y ++D+ KEKE++ V
Sbjct: 129 NVRRDAMEKFKAMKKNNEITEDDLKNCEKDVQKLTDKYCDEMDAACSAKEKEIMTV 184
>gi|124025289|ref|YP_001014405.1| ribosome recycling factor [Prochlorococcus marinus str. NATL1A]
gi|166230815|sp|A2C0Y0.1|RRF_PROM1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|123960357|gb|ABM75140.1| Ribosome recycling factor [Prochlorococcus marinus str. NATL1A]
Length = 182
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 93/179 (51%), Positives = 132/179 (73%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
+++K M ++++ + NFN++RTGR+N ++LD+I VEYYG+ LKS+A I TPDS ++
Sbjct: 4 QELKNTMSKSVEAAQRNFNTIRTGRANTSLLDRISVEYYGAETPLKSLATITTPDSQTIA 63
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D SL SIEKAI +SDLG TPNNDG++IR+ +P LT ERRKE K+ +K AEEGKV
Sbjct: 64 IQPFDLGSLASIEKAIATSDLGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKV 123
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RNIRR+A+ +K +K+ LSED +D +QK TD ++K I+ +KE E+LKV
Sbjct: 124 ALRNIRREAIDRVKKSEKDGDLSEDQSRDEQEKIQKETDNFIKDIEKKLSEKEAEILKV 182
>gi|113953351|ref|YP_731208.1| ribosome recycling factor [Synechococcus sp. CC9311]
gi|122945600|sp|Q0I8L4.1|RRF_SYNS3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|113880702|gb|ABI45660.1| ribosome recycling factor [Synechococcus sp. CC9311]
Length = 182
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 90/178 (50%), Positives = 132/178 (74%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D++A M ++++ + NFN++RTGR+NP++LD+I VEYYG+ LKS+A ++TPDS ++ +
Sbjct: 5 DLEANMRKSVEATQRNFNTIRTGRANPSLLDRINVEYYGADTPLKSLASLSTPDSQTIAV 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D SL IEKAI +SDLG TPNNDG++IR+ +P LT ERRKE K+ AK +EEGKVA
Sbjct: 65 QPFDMGSLALIEKAIATSDLGFTPNNDGKIIRINVPPLTEERRKEFCKLAAKYSEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+R++RRDA+ +K +KE LSED +D +QK TD ++ +++ KE E+LKV
Sbjct: 125 LRSVRRDAIDKIKKQEKEGDLSEDQSRDEQDQVQKTTDRFIAELEKHLADKEVEILKV 182
>gi|291557942|emb|CBL35059.1| ribosome recycling factor [Eubacterium siraeum V10Sc8a]
Length = 184
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/176 (50%), Positives = 132/176 (75%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +M + + V T + S+R GR+NPA+LDK+ V+YYG P + ++A + ++ L+I P
Sbjct: 9 KDKMGKCVAAVETEYASIRAGRANPAVLDKVTVDYYGVPTQINAMAAVAVSEARVLVITP 68
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
+D S+LKSIEKAI++SD+G+TP NDG+ IR+T PQLT ERRKEL K V K AEEGKVAVR
Sbjct: 69 WDASTLKSIEKAILASDIGITPTNDGKAIRITFPQLTEERRKELCKQVKKIAEEGKVAVR 128
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N+RRDA++ ++ ++K +++ED++K+ D+QKLTD+Y ++D+ KEKE++ V
Sbjct: 129 NVRRDAMEKFKAMKKNSEITEDDLKNCEKDVQKLTDKYCDEMDAACSAKEKEIMTV 184
>gi|403667586|ref|ZP_10932891.1| ribosome recycling factor [Kurthia sp. JC8E]
Length = 185
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/174 (52%), Positives = 129/174 (74%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM + ID + ++R GR+N ++LD+I VEYYG+P L +A I+ P++ L+IQPYD
Sbjct: 12 RMSKAIDALTRALAAIRAGRANASLLDRITVEYYGAPTPLNQMAGISIPEARLLVIQPYD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+ L IEKA++ SDLG+TP NDG VIRLT+P LT ERRK+L K+V K+AEE KVA+RNI
Sbjct: 72 KTILGDIEKALLKSDLGITPTNDGSVIRLTIPALTEERRKDLVKLVKKEAEEAKVAIRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA ++KL+K +++ED+++ S D+QKLTD+ +KKID + KE E+L V
Sbjct: 132 RRDANDDFKKLEKAGEITEDDLRSFSDDVQKLTDQNIKKIDEVAADKESEILSV 185
>gi|303273418|ref|XP_003056070.1| ribosomal recycling factor, chloroplast precursor [Micromonas
pusilla CCMP1545]
gi|226462154|gb|EEH59446.1| ribosomal recycling factor, chloroplast precursor [Micromonas
pusilla CCMP1545]
Length = 245
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 91/181 (50%), Positives = 136/181 (75%), Gaps = 3/181 (1%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
IE+ RME+++D +R N N+VRTGR+N A+LD+IEVEYYGS LKS+A I TPD+ +
Sbjct: 68 IEQSADDRMEKSVDSIRNNLNTVRTGRANAAILDRIEVEYYGSVTPLKSLANITTPDAQT 127
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
++IQP+DK+ + +EKAI+SSDL + P NDG IRL +P LT+ERR++L+K+V+K E+G
Sbjct: 128 IIIQPFDKNIIDDVEKAIMSSDLDLMPGNDGNCIRLNIPPLTAERRRDLAKLVSKLGEDG 187
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVA+RN+RRD L++ KL K SED +K L ++++K+T ++ +D + ++KE E+ K
Sbjct: 188 KVALRNVRRDTLRSIGKL---KGYSEDEIKSLENNVEKMTLKHTTDVDEVVRKKEDEISK 244
Query: 276 V 276
V
Sbjct: 245 V 245
>gi|114566420|ref|YP_753574.1| ribosome recycling factor [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|122318505|sp|Q0AYK1.1|RRF_SYNWW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|114337355|gb|ABI68203.1| ribosome recycling factor [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
Length = 185
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/178 (53%), Positives = 135/178 (75%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + RM++TI+ +R + S+R GR+NPAML+KI V+YYG P + +A I P++ L+I
Sbjct: 8 DTEERMKKTIEHLRKDLASLRAGRANPAMLEKIMVDYYGQPTPINQLANITVPEARLLVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+DK+ + SIEKAI+ SDLG+ P+NDG VIRL +PQLT ERRKEL KV+ K+AEE +VA
Sbjct: 68 QPWDKTIIASIEKAIMKSDLGINPSNDGNVIRLVIPQLTEERRKELVKVLRKRAEEARVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRNIRRD+ + + +KEK +SED+ K D+QK TD ++K+IDSI + KEKE+++V
Sbjct: 128 VRNIRRDSNELLKSGEKEKLISEDDNKKGMDDIQKETDRHIKEIDSILQGKEKEIMEV 185
>gi|410456942|ref|ZP_11310789.1| ribosome recycling factor [Bacillus bataviensis LMG 21833]
gi|409926916|gb|EKN64067.1| ribosome recycling factor [Bacillus bataviensis LMG 21833]
Length = 185
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 93/176 (52%), Positives = 131/176 (74%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K RM + I S+R GR++ ++LD+I V+YYG+P + +A I TP++ ++IQP
Sbjct: 10 KDRMTKAIQSYSRELASIRAGRASASLLDRITVDYYGAPTPVNQMAGITTPEARLIVIQP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDKS L IEKAI+ SDLG+ P NDG++IR+ +PQLT ERRKEL KVV K++EE KVA+R
Sbjct: 70 YDKSILGDIEKAILKSDLGLNPTNDGQIIRIAIPQLTEERRKELVKVVKKESEEAKVALR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRRD+ + +KL+K ++ED ++ S D+QKLTDEY++KID I K+KEKE+L+V
Sbjct: 130 NIRRDSNDSLKKLEKNGDITEDALRGFSDDVQKLTDEYIQKIDQITKEKEKEILEV 185
>gi|149183486|ref|ZP_01861915.1| ribosome recycling factor [Bacillus sp. SG-1]
gi|148848798|gb|EDL63019.1| ribosome recycling factor [Bacillus sp. SG-1]
Length = 185
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 91/183 (49%), Positives = 137/183 (74%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S++ + K RM + I S+R GR+N ++LDKI V+YYG+P + +A I+ P++
Sbjct: 3 SNVMSNTKERMTKAIQTFTRELASIRAGRANASLLDKITVDYYGAPTPVNQLAGISVPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
L+IQPYDKS+L IEKAI+ SDLG+TP++DG ++R+ +PQLT ERRK+L K+V K++E
Sbjct: 63 RMLVIQPYDKSALGDIEKAIMKSDLGITPSSDGNILRIVIPQLTEERRKDLVKLVKKESE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+ KVA+RNIRRDA ++KL+K ++ED+++ S D+QKLTD+++ +IDSI K KEKE+
Sbjct: 123 DAKVAIRNIRRDANDEFKKLEKNGDITEDDLRGYSDDVQKLTDDHINQIDSIAKDKEKEI 182
Query: 274 LKV 276
L+V
Sbjct: 183 LEV 185
>gi|260583805|ref|ZP_05851553.1| ribosome recycling factor [Granulicatella elegans ATCC 700633]
gi|260158431|gb|EEW93499.1| ribosome recycling factor [Granulicatella elegans ATCC 700633]
Length = 186
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 91/183 (49%), Positives = 135/183 (73%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I + K RM++T D ++ +R GR+N ++LD+++VEYYG P + +A + P++
Sbjct: 4 TEIIANAKERMKKTEDALQRELGGIRAGRANASLLDRLQVEYYGVPTPVNQLASVTVPEA 63
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LLI PYDKSSL+ IE+AI+ SD+G+TP NDG V+RL +PQLT ERRKEL+K V K+AE
Sbjct: 64 RMLLITPYDKSSLQDIERAILMSDIGITPTNDGSVVRLVIPQLTEERRKELAKQVGKEAE 123
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
KV+VRNIRRDA++ +K +K K+++ED+++ D+QKLTD+ +K ID + + KEKEL
Sbjct: 124 GAKVSVRNIRRDAIEHLKKAEKNKEITEDDLRGYEKDIQKLTDDSVKNIDHLAQVKEKEL 183
Query: 274 LKV 276
L+V
Sbjct: 184 LEV 186
>gi|427701395|ref|YP_007044617.1| ribosome recycling factor [Cyanobium gracile PCC 6307]
gi|427344563|gb|AFY27276.1| ribosome recycling factor [Cyanobium gracile PCC 6307]
Length = 179
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 90/178 (50%), Positives = 132/178 (74%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D++A M ++++ + FN++RTGR+NP++LDK+ VEYYGS LKS+A I+TPD+ ++ I
Sbjct: 2 DLEASMRKSVEATQRTFNTIRTGRANPSLLDKLTVEYYGSETPLKSLATISTPDAQTIQI 61
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+DK S+ IEKAI SDLG+TPNNDG VIR+ +P LT +RRKEL K+ AK AEEGKV
Sbjct: 62 QPFDKGSMALIEKAIAMSDLGLTPNNDGRVIRINIPPLTEDRRKELCKLAAKYAEEGKVG 121
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RN+RR+ ++ +K +K+ + SED D +QKLTD Y+ +++ +KE ++LKV
Sbjct: 122 LRNLRREGIERIKKQEKDGEFSEDQSHDEQEKVQKLTDRYIAELEKHLAEKEADILKV 179
>gi|440753051|ref|ZP_20932254.1| ribosome recycling factor [Microcystis aeruginosa TAIHU98]
gi|440177544|gb|ELP56817.1| ribosome recycling factor [Microcystis aeruginosa TAIHU98]
Length = 173
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 134/173 (77%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M++T++ + FN++RTGR+N ++LD+I VEYYG LKS+A I+TPD++++ IQP+D+
Sbjct: 1 MQKTVESTQRAFNTIRTGRANASLLDRIVVEYYGMETPLKSLATISTPDATTIAIQPFDR 60
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
+S+ +IEKAI SD+G+TP+NDG+ IRL +P LTS+RRK+L K+ AK AEEGKV+VRNIR
Sbjct: 61 TSMGAIEKAISLSDVGLTPSNDGQTIRLNIPPLTSDRRKDLVKLAAKLAEEGKVSVRNIR 120
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RDA+ A K +K ++SED +DL +QK TD+++ KI+ + KEK+++ V
Sbjct: 121 RDAIDAIRKQEKSHEISEDESRDLQDQVQKSTDKFIAKIEDLLTTKEKDIMTV 173
>gi|163119440|ref|YP_079046.2| ribosome recycling factor [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319645965|ref|ZP_08000195.1| ribosome-recycling factor [Bacillus sp. BT1B_CT2]
gi|404489143|ref|YP_006713249.1| ribosome recycling factor [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423682197|ref|ZP_17657036.1| ribosome recycling factor [Bacillus licheniformis WX-02]
gi|60390243|sp|Q65JJ6.1|RRF_BACLD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|52348134|gb|AAU40768.1| ribosome-recycling factor Frr [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|145902947|gb|AAU23408.2| ribosome recycling factor [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|317391715|gb|EFV72512.1| ribosome-recycling factor [Bacillus sp. BT1B_CT2]
gi|383438971|gb|EID46746.1| ribosome recycling factor [Bacillus licheniformis WX-02]
Length = 185
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 93/183 (50%), Positives = 133/183 (72%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ + + K RM++ I + +VR GR+NP++LDK+ VEYYG+ L IA I P++
Sbjct: 3 TQVMNETKERMQKAISAYQRELATVRAGRANPSLLDKVAVEYYGAQTPLNQIASITVPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
L+I PYDK++L IEKAI +DLG+TP+NDG +IR+T+P LT ERRKEL+K+V K +E
Sbjct: 63 RMLVITPYDKTALGDIEKAIQKADLGVTPSNDGNIIRITIPPLTEERRKELAKLVKKYSE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+ KVAVRNIRRDA +KL+K +++ED ++ + D+QKLTDEY+ KID I K KEKE+
Sbjct: 123 DAKVAVRNIRRDANDDLKKLEKNGEMTEDELRSSTEDVQKLTDEYVSKIDEITKDKEKEI 182
Query: 274 LKV 276
++V
Sbjct: 183 MEV 185
>gi|147677590|ref|YP_001211805.1| ribosome recycling factor [Pelotomaculum thermopropionicum SI]
gi|189044063|sp|A5D2T8.1|RRF_PELTS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|146273687|dbj|BAF59436.1| ribosome recycling factor [Pelotomaculum thermopropionicum SI]
Length = 185
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 90/179 (50%), Positives = 135/179 (75%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+ ++ M++TI++V+ F S+R GR+ PA+LDK+ V YYG+P + +A I+ P++ L+
Sbjct: 7 KEAESNMKKTIEVVKKEFASLRAGRATPALLDKVMVNYYGTPTPVNQLANISVPEARLLV 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
+QP+DK+ L IE+AI+ SDLG+TP +DG VIRL +PQLT ERR EL KV+ K+AEEG+V
Sbjct: 67 VQPWDKTVLPEIERAILKSDLGITPASDGNVIRLAIPQLTQERRAELMKVIKKKAEEGRV 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RNIRRD + + QK+ K+SED +K ++QKLTD Y+K+IDS+ KE+E+++V
Sbjct: 127 AIRNIRRDTNEQLKSQQKDGKMSEDELKRSQDEVQKLTDRYIKEIDSLLSTKEQEIMQV 185
>gi|403234769|ref|ZP_10913355.1| ribosome recycling factor [Bacillus sp. 10403023]
Length = 185
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 92/177 (51%), Positives = 130/177 (73%)
Query: 100 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQ 159
VK +M + I + +VR GR+NPA+LDK+ V+YYG+P L +A IN P++ L+IQ
Sbjct: 9 VKDKMSKAIQALSRELATVRAGRANPAILDKVTVDYYGAPTPLNQLASINVPEARMLVIQ 68
Query: 160 PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAV 219
PYDKS L +EKAI +DLG+ P NDG +IR+++P LT ERR+EL K+V K AEE KVAV
Sbjct: 69 PYDKSVLGDMEKAIQKADLGLNPTNDGSIIRISIPPLTEERRRELVKLVKKYAEESKVAV 128
Query: 220 RNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RNIRRD +KL+K +++ED ++ L+ D+QK+TDE + KIDS+ K+KEKE+++V
Sbjct: 129 RNIRRDGNDELKKLEKNGEITEDELRSLTEDVQKITDESISKIDSVSKEKEKEIMEV 185
>gi|320159761|ref|YP_004172985.1| ribosome recycling factor [Anaerolinea thermophila UNI-1]
gi|319993614|dbj|BAJ62385.1| ribosome recycling factor [Anaerolinea thermophila UNI-1]
Length = 185
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 90/179 (50%), Positives = 135/179 (75%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+ + RM+ I + N +RTGR++PA++++++VEYYG P L +A I+ P+ L+
Sbjct: 7 KEAETRMKGAIQALEENLAGIRTGRASPALVERLQVEYYGVPTPLMQLASISAPEPRVLM 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I+P+D SSL+ IEKAI++SDLG+TPNNDG+VIRL +P LT ERR+EL KVV + EE ++
Sbjct: 67 IRPFDTSSLRLIEKAIMASDLGLTPNNDGKVIRLNIPPLTEERRRELVKVVHARLEESRI 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
AVRN+RRD +K +KEK +SED++K +LQKLTD Y+++ID+I ++KEKE+++V
Sbjct: 127 AVRNVRRDMVKDLRDFEKEKLISEDDLKKGEEELQKLTDRYIQEIDAIGQKKEKEIMEV 185
>gi|33861078|ref|NP_892639.1| ribosome recycling factor [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
gi|39932081|sp|Q7V2F9.1|RRF_PROMP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|33639810|emb|CAE18980.1| Ribosome recycling factor [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
Length = 182
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 93/180 (51%), Positives = 139/180 (77%)
Query: 97 EKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSL 156
E+++++ M ++++ + NFN++RTGR+N ++LD+I VEYYG+ +KS+A I+T DS ++
Sbjct: 3 EQEIQSSMNKSVEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLASISTIDSQTI 62
Query: 157 LIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
IQP+D SSL++IEKAI SDLG+TPNNDG+VIR+ +P LT ERRKE K+ +K AEEGK
Sbjct: 63 SIQPFDISSLQTIEKAISVSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGK 122
Query: 217 VAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VA+RNIRRDA+ +K +KE +S+D +D ++QK TD+Y+ I++ +KEKE+LKV
Sbjct: 123 VALRNIRRDAVDKEKKDEKEGLISKDVSRDNQLEIQKFTDKYISLIETKLSEKEKEILKV 182
>gi|350270335|ref|YP_004881643.1| ribosome recycling factor [Oscillibacter valericigenes Sjm18-20]
gi|348595177|dbj|BAK99137.1| ribosome recycling factor [Oscillibacter valericigenes Sjm18-20]
Length = 185
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 90/174 (51%), Positives = 131/174 (75%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M+++I+ V +F +VR GR+N A+LD+I V+YYG+P ++ IA I +PD SL+IQP+D
Sbjct: 12 KMKKSIESVAADFAAVRAGRANAAVLDRITVDYYGTPTPIQQIASIASPDPRSLVIQPWD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
+++KSIE+AI +SDLG+ P NDG+ +RL+ PQLT ERRKEL K + K E GKVA+RNI
Sbjct: 72 TTAVKSIERAIQNSDLGINPQNDGKSLRLSFPQLTEERRKELVKQIHKYTESGKVAIRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA++ ++K +K ++ED++K DLQK+TDE KK+D + KEKEL+ V
Sbjct: 132 RRDAVEVFKKAEKATDITEDDLKQAEKDLQKMTDESCKKLDEMLASKEKELMAV 185
>gi|87302617|ref|ZP_01085434.1| ribosome releasing factor [Synechococcus sp. WH 5701]
gi|87282961|gb|EAQ74918.1| ribosome releasing factor [Synechococcus sp. WH 5701]
Length = 179
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 86/178 (48%), Positives = 136/178 (76%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D+ A M ++++ + FN++RTGR+NP++LDKI +EYYG+ L+S+A ++TPDS ++ I
Sbjct: 2 DLDASMRKSLEATQRTFNTIRTGRANPSLLDKITIEYYGAETPLRSVASLSTPDSQTIQI 61
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D +++ SIEKAI SDLG+TPNNDG +IR+ +P LT++RRKE K+ ++ AE+GKVA
Sbjct: 62 QPFDSAAMASIEKAIAMSDLGLTPNNDGRLIRINIPPLTADRRKEFCKLASRYAEDGKVA 121
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA++ +K +K+ +LSED +D +QKLTD ++ +++ +KE ++LKV
Sbjct: 122 LRNIRRDAIEKIKKQEKDGELSEDQSRDEQEKVQKLTDRFIVELEKSLAEKEADILKV 179
>gi|88807685|ref|ZP_01123197.1| ribosome releasing factor [Synechococcus sp. WH 7805]
gi|88788899|gb|EAR20054.1| ribosome releasing factor [Synechococcus sp. WH 7805]
Length = 182
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 89/178 (50%), Positives = 135/178 (75%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D+++ M ++++ + NFN++RTGR+N ++LD+I VEYYG+ LKS+A ++TPDS ++ I
Sbjct: 5 DLESSMRKSVEATQRNFNTIRTGRANSSLLDRISVEYYGADTPLKSLATLSTPDSQTIQI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D S+L SIEKAI S+LG TPNNDG+VIR+ +P LT ERRKE K+ +K AEEGKVA
Sbjct: 65 QPFDISALASIEKAIAMSELGFTPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RN+RRDA+ +K +K+ LSED +D ++QKLT++++ +++ KE ++LKV
Sbjct: 125 LRNLRRDAIDKIKKQEKDGDLSEDQSRDQQDEIQKLTNQFIAELEKHLATKEADILKV 182
>gi|402574053|ref|YP_006623396.1| ribosome recycling factor [Desulfosporosinus meridiei DSM 13257]
gi|402255250|gb|AFQ45525.1| ribosome recycling factor [Desulfosporosinus meridiei DSM 13257]
Length = 185
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 89/183 (48%), Positives = 135/183 (73%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S + KD RM + +D +R + ++R GR+NP++LDK+ VEYYG+P + +A I+TP++
Sbjct: 3 SEVIKDANERMHKGVDALRREYTTIRAGRANPSVLDKVMVEYYGAPTPINQLANISTPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LLIQP+D++ L +IEK I+ SDLG+ P++DG VIRL +PQLT+ERR EL K V K+AE
Sbjct: 63 RMLLIQPWDRTVLPAIEKGIMKSDLGLNPSSDGNVIRLMIPQLTAERRTELVKTVKKKAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
E +VAVRN+RRD +KL+K+ ++SED VK ++QK+TD+ +K+ID + + KE E+
Sbjct: 123 EARVAVRNVRRDVNDQLKKLEKDHEVSEDEVKRAQDEVQKITDKIIKEIDRVMETKESEI 182
Query: 274 LKV 276
++V
Sbjct: 183 VEV 185
>gi|414155224|ref|ZP_11411539.1| Ribosome-recycling factor [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
gi|411453274|emb|CCO09443.1| Ribosome-recycling factor [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
Length = 184
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 93/173 (53%), Positives = 129/173 (74%), Gaps = 1/173 (0%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M++T+++VR F S+R GR+ PA+LDK+ V YYG+P L +A I+ P++ L+IQP+DK
Sbjct: 13 MKKTVEVVRKEFASLRAGRATPALLDKVTVSYYGTPTPLNQLANISVPEARMLVIQPWDK 72
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
S + IE+AI+ SDLG+TP +DG V+RL +PQLT ERR EL KVV K+AEEG+VAVRNIR
Sbjct: 73 SVIPEIERAILKSDLGITPTSDGTVVRLVIPQLTQERRTELVKVVKKKAEEGRVAVRNIR 132
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RD + QKE + ED VK DLQK+TD+Y+K+ID + K KE+E+++V
Sbjct: 133 RDVNDVLKVKQKE-GVPEDEVKRGQEDLQKITDKYIKEIDEMVKSKEQEIMQV 184
>gi|452974444|gb|EME74264.1| ribosome recycling factor [Bacillus sonorensis L12]
Length = 185
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 92/176 (52%), Positives = 129/176 (73%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K RME+ + + +VR GR+NP++LDK+ VEYYG+ L +A I P++ L+I P
Sbjct: 10 KERMEKAVAAYQRELATVRAGRANPSLLDKVTVEYYGAQTPLNQLASITVPEARMLVITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK++L IEKAI +DLG+TP NDG +IR+T+P LT ERRKEL+K+V K +E+ KVAVR
Sbjct: 70 YDKTALGDIEKAIQKADLGVTPTNDGSIIRITIPPLTEERRKELAKLVKKYSEDAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRRDA +KL+K +++ED ++ + D+QKLTDEY+ KID I K KEKE+++V
Sbjct: 130 NIRRDANDDLKKLEKNGEMTEDELRSSTEDVQKLTDEYVSKIDEITKDKEKEIMEV 185
>gi|374997065|ref|YP_004972564.1| ribosome recycling factor [Desulfosporosinus orientis DSM 765]
gi|357215431|gb|AET70049.1| ribosome recycling factor [Desulfosporosinus orientis DSM 765]
Length = 185
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/183 (49%), Positives = 135/183 (73%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S + KD RM + +D +R + ++R GR+NP++LDK+ V+YYG+P + +A I+TP++
Sbjct: 3 SEVIKDADERMHKGVDALRREYATIRAGRANPSVLDKVMVDYYGAPTPVNQLANISTPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
L+IQP+DKS L SIEKAI+ SDLG+ P++DG VIRL +PQLTSERR EL K + K+AE
Sbjct: 63 RMLVIQPWDKSVLPSIEKAIMKSDLGLNPSSDGNVIRLVIPQLTSERRTELVKTIKKKAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
E +VAVRNIRRD +KL+K+ + SED VK ++QK+TD+ +K+I+ + + KE E+
Sbjct: 123 EARVAVRNIRRDVNDQLKKLEKDHEASEDEVKRAQEEVQKMTDKVIKEIERVMETKESEI 182
Query: 274 LKV 276
++V
Sbjct: 183 IEV 185
>gi|227890626|ref|ZP_04008431.1| ribosome recycling factor, RRF [Lactobacillus salivarius ATCC
11741]
gi|301300274|ref|ZP_07206483.1| ribosome recycling factor [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|227867564|gb|EEJ74985.1| ribosome recycling factor, RRF [Lactobacillus salivarius ATCC
11741]
gi|300852115|gb|EFK79790.1| ribosome recycling factor [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 187
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 94/180 (52%), Positives = 131/180 (72%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I K+ + +M + D +R ++R GR+N ++L++I VEYYG+P L +AQI+ P++
Sbjct: 7 IIKEAQEKMTKAEDSLRRELGNIRAGRANASLLNRINVEYYGAPTPLNQMAQISVPEARV 66
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LL+ PYDKSSLK+IE AI++SDLG+ P NDG IRL +PQLT ERRKEL+K V +E G
Sbjct: 67 LLVTPYDKSSLKNIEHAIMASDLGIAPMNDGTAIRLVIPQLTEERRKELAKQVKAVSETG 126
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVAVRNIRRD + A +K QK L+ED+++DL + QK+TDE +K ID I + KEKE+L+
Sbjct: 127 KVAVRNIRRDMMDALKKAQKNGDLTEDDLRDLENQAQKVTDESIKNIDKITEDKEKEVLE 186
>gi|295111329|emb|CBL28079.1| ribosome recycling factor [Synergistetes bacterium SGP1]
Length = 185
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/178 (48%), Positives = 139/178 (78%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+++ M++ ID ++ + S+RTGR++P ++ I+++YYG+P LK IA I P+S ++
Sbjct: 7 KELQESMDKAIDFLQNEYLSIRTGRAHPGLVSDIKLDYYGTPTPLKQIANITIPESRTIQ 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I P+D++SLK+IEKAI+++++GMTP NDG IRLTLP+LT ERR EL+K++AK+AE+ +V
Sbjct: 67 IAPFDRTSLKAIEKAILAANIGMTPQNDGASIRLTLPELTRERRVELTKLLAKKAEDARV 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
VRN RRDA+++ +K +K +++ED++K L+ +Q TD Y+KK+D IYK KEKE+L+
Sbjct: 127 VVRNYRRDAIESLKKQEKASEITEDDLKTLTKGVQDKTDAYVKKVDEIYKAKEKEVLE 184
>gi|87123906|ref|ZP_01079756.1| ribosome recycling factor protein Rrf [Synechococcus sp. RS9917]
gi|86168475|gb|EAQ69732.1| ribosome recycling factor protein Rrf [Synechococcus sp. RS9917]
Length = 182
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 90/180 (50%), Positives = 134/180 (74%)
Query: 97 EKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSL 156
+ D++ M+++++ + FN++RTGR+N ++LD+I VEYYG+ LKS+A ++TPDS ++
Sbjct: 3 QNDLETSMQKSVESTQRMFNTIRTGRANSSLLDRISVEYYGADTPLKSLATLSTPDSQTI 62
Query: 157 LIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
IQP+D S+L +IEKAI S+LG TPNNDG+VIR+ +P LT ERRKE K+ +K AEEGK
Sbjct: 63 QIQPFDLSALAAIEKAIAMSELGFTPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGK 122
Query: 217 VAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VA+RNIRRDA+ +K +KE ++SED +D +QKLTD ++ I++ KE ++LKV
Sbjct: 123 VALRNIRRDAIDKVKKQEKEGEISEDQSRDEQDKVQKLTDRFIAAIETHLADKEADILKV 182
>gi|338813316|ref|ZP_08625445.1| ribosome recycling factor [Acetonema longum DSM 6540]
gi|337274675|gb|EGO63183.1| ribosome recycling factor [Acetonema longum DSM 6540]
Length = 186
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 133/174 (76%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM++ ++ +R ++ ++R GR+ PA+LDKI V+YYG+P + + I+ P+ ++IQP++
Sbjct: 13 RMQKAVEALRKDYQTLRAGRATPAILDKITVDYYGTPTPVNQVGNISVPEPRMIVIQPWE 72
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+ L IEKAI+ SDLG+TP++DG VIRL +PQLT +RR EL KV+ K+AEE +VA+RN+
Sbjct: 73 KTMLGPIEKAILKSDLGLTPSSDGSVIRLLIPQLTQQRRTELVKVIHKKAEEARVAIRNV 132
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA +A +K++K+K +SED K D+QKLTD+Y+K ID++ KEKE+++V
Sbjct: 133 RRDANEAIKKVEKDKLISEDENKKAQDDMQKLTDKYIKDIDTVMTAKEKEIMEV 186
>gi|443632677|ref|ZP_21116856.1| ribosome recycling factor [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
gi|443347500|gb|ELS61558.1| ribosome recycling factor [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
Length = 185
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 129/176 (73%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +ME+ I + +VR GR+NP++LDK+ VEYYG+ L ++ IN P++ L++ P
Sbjct: 10 KEKMEKAIAAYQRELATVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARMLVVTP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDKS++ IEKAI+ +DLG+TP +DG +IR+ +P LT ERRKEL KVV K AEE KVAVR
Sbjct: 70 YDKSAIGDIEKAILKADLGLTPTSDGNMIRIAIPALTEERRKELVKVVKKYAEEAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N+RRDA +KL+K ++ED ++ + D+QKLTDEY+ KIDS+ K KEKE+++V
Sbjct: 130 NVRRDANDDLKKLEKNGDITEDELRASTEDVQKLTDEYVSKIDSVTKDKEKEIMEV 185
>gi|288553032|ref|YP_003424967.1| ribosome recycling factor [Bacillus pseudofirmus OF4]
gi|288544192|gb|ADC48075.1| ribosome recycling factor [Bacillus pseudofirmus OF4]
Length = 185
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 89/183 (48%), Positives = 134/183 (73%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I +D K RM + I+ + +R GR+NPA+LD++ VEYYG+ L +A I P++
Sbjct: 3 AEIMQDAKERMTKAIESLNRELAKLRAGRANPAILDRVTVEYYGAETPLNQLATITVPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
L+IQP+DK+S+ IE+AI +DLG+TP+NDG VIR+ +P LT ERR+EL K+V K AE
Sbjct: 63 RLLMIQPFDKTSMNDIERAIQKADLGLTPSNDGTVIRIAIPPLTEERRRELVKLVKKSAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
EGKVAVRN+RRDA +KLQK+ +++ED ++ + D+QKLTD+++ ID++ +KEKE+
Sbjct: 123 EGKVAVRNVRRDANDDLKKLQKDGEMTEDELRRYTDDVQKLTDKHISDIDAVADKKEKEI 182
Query: 274 LKV 276
++V
Sbjct: 183 MEV 185
>gi|239826646|ref|YP_002949270.1| ribosome recycling factor [Geobacillus sp. WCH70]
gi|259494544|sp|C5D9B8.1|RRF_GEOSW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|239806939|gb|ACS24004.1| ribosome recycling factor [Geobacillus sp. WCH70]
Length = 185
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 89/176 (50%), Positives = 134/176 (76%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +M++ + ++R GR+NP++L+K+ V+YYG P + +A I+ P++ L+IQP
Sbjct: 10 KEKMDKAVQAFTRELATIRAGRANPSLLEKVTVDYYGMPTPIIQLASISVPEARLLVIQP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDKS +K IEKAI+SSDLG+TP+NDG VIR+T+P LT ERR+EL K+V K +E+ KVAVR
Sbjct: 70 YDKSVIKDIEKAILSSDLGLTPSNDGSVIRITIPPLTEERRRELVKLVKKYSEDAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRRDA +KL+K +++ED ++ + D+QKLTD+++ KID+I K+KEKE+++V
Sbjct: 130 NIRRDANDELKKLEKNGEITEDELRGYTDDVQKLTDDHIAKIDAITKEKEKEVMEV 185
>gi|386758376|ref|YP_006231592.1| ribosome recycling factor [Bacillus sp. JS]
gi|384931658|gb|AFI28336.1| ribosome recycling factor [Bacillus sp. JS]
Length = 185
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 129/176 (73%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +ME+ I + +VR GR+NP++LDK+ VEYYG+ L ++ IN P++ L+I P
Sbjct: 10 KEKMEKAIAAYQRELATVRAGRANPSLLDKVSVEYYGAQTPLNQLSSINVPEARMLVITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+++ IEKAI+ +DLG+TP +DG +IR+ +P LT ERRKEL KVV K AEE KVAVR
Sbjct: 70 YDKTAIGDIEKAILKADLGLTPTSDGNMIRIAIPALTEERRKELVKVVKKYAEEAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N+RRDA +KL+K ++ED ++ + D+QKLTDEY+ KIDS+ K KEKE+++V
Sbjct: 130 NVRRDANDDLKKLEKNGDITEDELRASTEDVQKLTDEYVSKIDSVTKDKEKEIMEV 185
>gi|123968112|ref|YP_001008970.1| ribosome recycling factor [Prochlorococcus marinus str. AS9601]
gi|166230817|sp|A2BQ02.1|RRF_PROMS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|123198222|gb|ABM69863.1| Ribosome recycling factor [Prochlorococcus marinus str. AS9601]
Length = 182
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 92/180 (51%), Positives = 138/180 (76%)
Query: 97 EKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSL 156
EK+++ M ++I+ + NFN++RTGR+N ++LD++ VEYYG+ +KS+A I+T DS ++
Sbjct: 3 EKEIQENMNKSIEATQRNFNTIRTGRANASLLDRVSVEYYGAETPIKSLATISTVDSQTI 62
Query: 157 LIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
IQP+D S L++IEK+I SDLG+TPNNDG+VIR+ +P LT ERRKE K+ +K AEEGK
Sbjct: 63 SIQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGK 122
Query: 217 VAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VA+RNIRRDA+ +K +K+ +S D +D S++QK+TD+Y+ I++ +KEKE+LKV
Sbjct: 123 VALRNIRRDAVDKEKKDEKDGLISIDESRDNQSEIQKITDKYIALIETKLSEKEKEILKV 182
>gi|218247353|ref|YP_002372724.1| ribosome recycling factor [Cyanothece sp. PCC 8801]
gi|218167831|gb|ACK66568.1| ribosome recycling factor [Cyanothece sp. PCC 8801]
Length = 181
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 88/173 (50%), Positives = 129/173 (74%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M+++++ + +FN++RTGR+N ++LD++ VEYYG L +A I TPD++++ I PYDK
Sbjct: 9 MQKSVEATQRSFNTIRTGRANASLLDRVIVEYYGMETPLNQLANITTPDATTINILPYDK 68
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
S+ +IEKAI SDLG+TPNNDG+VIRL +P LT ERRKEL K+ K AEEGKVA+RNIR
Sbjct: 69 GSMGAIEKAINLSDLGLTPNNDGKVIRLNIPPLTEERRKELVKLAGKLAEEGKVAIRNIR 128
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RD + K +K ++SED ++L ++QK+TD++ KID + K KEK+++ V
Sbjct: 129 RDGIDTVRKQEKNNEISEDESRNLQDEIQKITDKFTTKIDELLKVKEKDIMTV 181
>gi|342216828|ref|ZP_08709475.1| ribosome recycling factor [Peptoniphilus sp. oral taxon 375 str.
F0436]
gi|341587718|gb|EGS31118.1| ribosome recycling factor [Peptoniphilus sp. oral taxon 375 str.
F0436]
Length = 185
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 88/183 (48%), Positives = 136/183 (74%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S I+ D RM++TI ++ + ++R GR+NP +LD+I V+YYG L +A I+ P+
Sbjct: 3 SDIKNDATGRMKKTIQVLEEDLQAIRAGRANPTLLDRIHVDYYGQSTPLNQMAGISAPEP 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
L IQP+D +++ IEKAI+ SDLG+ P+NDG+++RL +PQLT ERRKEL KVV K E
Sbjct: 63 RLLTIQPWDANAIPEIEKAILKSDLGLNPSNDGKLVRLVIPQLTEERRKELIKVVKKDGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+ KVA+RNIRR+ + + +K++K+K++SED +K D+Q LTD+Y+K+ID++ ++KEKEL
Sbjct: 123 DSKVAIRNIRREMVDSVKKMEKDKEISEDELKVAEKDIQDLTDKYIKEIDAVVERKEKEL 182
Query: 274 LKV 276
L++
Sbjct: 183 LEI 185
>gi|16078715|ref|NP_389534.1| ribosome recycling factor [Bacillus subtilis subsp. subtilis str.
168]
gi|221309530|ref|ZP_03591377.1| ribosome recycling factor [Bacillus subtilis subsp. subtilis str.
168]
gi|221313854|ref|ZP_03595659.1| ribosome recycling factor [Bacillus subtilis subsp. subtilis str.
NCIB 3610]
gi|221318777|ref|ZP_03600071.1| ribosome recycling factor [Bacillus subtilis subsp. subtilis str.
JH642]
gi|221323049|ref|ZP_03604343.1| ribosome recycling factor [Bacillus subtilis subsp. subtilis str.
SMY]
gi|321315419|ref|YP_004207706.1| ribosome recycling factor [Bacillus subtilis BSn5]
gi|402775898|ref|YP_006629842.1| ribosome recycling factor [Bacillus subtilis QB928]
gi|418033199|ref|ZP_12671676.1| ribosome recycling factor [Bacillus subtilis subsp. subtilis str.
SC-8]
gi|428279250|ref|YP_005560985.1| ribosome recycling factor [Bacillus subtilis subsp. natto BEST195]
gi|430758924|ref|YP_007209645.1| Ribosome recycling factor [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|449094343|ref|YP_007426834.1| ribosome recycling factor [Bacillus subtilis XF-1]
gi|452914427|ref|ZP_21963054.1| ribosome recycling factor [Bacillus subtilis MB73/2]
gi|3122762|sp|P81101.2|RRF_BACSU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor; AltName: Full=Vegetative
protein 12B; Short=VEG12B
gi|2634024|emb|CAB13525.1| ribosome recycling factor [Bacillus subtilis subsp. subtilis str.
168]
gi|291484207|dbj|BAI85282.1| ribosome recycling factor [Bacillus subtilis subsp. natto BEST195]
gi|320021693|gb|ADV96679.1| ribosome recycling factor [Bacillus subtilis BSn5]
gi|351469347|gb|EHA29523.1| ribosome recycling factor [Bacillus subtilis subsp. subtilis str.
SC-8]
gi|402481080|gb|AFQ57589.1| Ribosome recycling factor [Bacillus subtilis QB928]
gi|407959059|dbj|BAM52299.1| ribosome recycling factor [Synechocystis sp. PCC 6803]
gi|407964636|dbj|BAM57875.1| ribosome recycling factor [Bacillus subtilis BEST7003]
gi|430023444|gb|AGA24050.1| Ribosome recycling factor [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|449028258|gb|AGE63497.1| ribosome recycling factor [Bacillus subtilis XF-1]
gi|452116847|gb|EME07242.1| ribosome recycling factor [Bacillus subtilis MB73/2]
Length = 185
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 129/176 (73%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +ME+ I + +VR GR+NP++LDK+ VEYYG+ L ++ IN P++ L+I P
Sbjct: 10 KEKMEKAIAAYQRELATVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARMLVITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+++ IEKAI+ +DLG+TP +DG +IR+ +P LT ERRKEL KVV K AEE KVAVR
Sbjct: 70 YDKTAIGDIEKAILKADLGLTPTSDGNMIRIAIPALTEERRKELVKVVKKYAEEAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N+RRDA +KL+K ++ED ++ + D+QKLTDEY+ KIDS+ K KEKE+++V
Sbjct: 130 NVRRDANDDLKKLEKNGDITEDELRASTEDVQKLTDEYVSKIDSVTKDKEKEIMEV 185
>gi|90961538|ref|YP_535454.1| ribosome recycling factor [Lactobacillus salivarius UCC118]
gi|417788084|ref|ZP_12435767.1| ribosome recycling factor [Lactobacillus salivarius NIAS840]
gi|417810473|ref|ZP_12457152.1| ribosome recycling factor [Lactobacillus salivarius GJ-24]
gi|418961172|ref|ZP_13513059.1| ribosome recycling factor [Lactobacillus salivarius SMXD51]
gi|122449175|sp|Q1WUG4.1|RRF_LACS1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|90820732|gb|ABD99371.1| Ribosome Recycling Factor, RRF [Lactobacillus salivarius UCC118]
gi|334308261|gb|EGL99247.1| ribosome recycling factor [Lactobacillus salivarius NIAS840]
gi|335349269|gb|EGM50769.1| ribosome recycling factor [Lactobacillus salivarius GJ-24]
gi|380344839|gb|EIA33185.1| ribosome recycling factor [Lactobacillus salivarius SMXD51]
Length = 187
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 93/180 (51%), Positives = 131/180 (72%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I K+ + +M + D +R ++R GR+N ++L++I VEYYG+P L +AQI+ P++
Sbjct: 7 IIKEAQEKMTKAEDSLRRELGNIRAGRANASLLNRINVEYYGAPTPLNQMAQISVPEARV 66
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LL+ PYDK+SLK+IE AI++SDLG+ P NDG IRL +PQLT ERRKEL+K V +E G
Sbjct: 67 LLVTPYDKTSLKNIEHAIMASDLGIAPMNDGTAIRLVIPQLTEERRKELAKQVKAVSETG 126
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVAVRNIRRD + A +K QK L+ED+++DL + QK+TDE +K ID I + KEKE+L+
Sbjct: 127 KVAVRNIRRDMMDALKKAQKNGDLTEDDLRDLENQAQKVTDESIKNIDKITEDKEKEVLE 186
>gi|154686069|ref|YP_001421230.1| ribosome recycling factor [Bacillus amyloliquefaciens FZB42]
gi|375362297|ref|YP_005130336.1| Ribosome recycling factor [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|384265236|ref|YP_005420943.1| Ribosome recycling factor [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|385264779|ref|ZP_10042866.1| ribosome recycling factor [Bacillus sp. 5B6]
gi|387898234|ref|YP_006328530.1| ribosome recycling factor [Bacillus amyloliquefaciens Y2]
gi|394993995|ref|ZP_10386732.1| ribosome recycling factor [Bacillus sp. 916]
gi|421731676|ref|ZP_16170799.1| ribosome recycling factor [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|429505206|ref|YP_007186390.1| ribosome recycling factor [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|451346975|ref|YP_007445606.1| ribosome recycling factor [Bacillus amyloliquefaciens IT-45]
gi|452855599|ref|YP_007497282.1| ribosome recycling factor [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
gi|166230410|sp|A7Z4S3.1|RRF_BACA2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|154351920|gb|ABS73999.1| Frr [Bacillus amyloliquefaciens FZB42]
gi|371568291|emb|CCF05141.1| Ribosome recycling factor [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|380498589|emb|CCG49627.1| Ribosome recycling factor [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|385149275|gb|EIF13212.1| ribosome recycling factor [Bacillus sp. 5B6]
gi|387172344|gb|AFJ61805.1| ribosome recycling factor [Bacillus amyloliquefaciens Y2]
gi|393805189|gb|EJD66571.1| ribosome recycling factor [Bacillus sp. 916]
gi|407073889|gb|EKE46879.1| ribosome recycling factor [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|429486796|gb|AFZ90720.1| ribosome recycling factor [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|449850733|gb|AGF27725.1| ribosome recycling factor [Bacillus amyloliquefaciens IT-45]
gi|452079859|emb|CCP21617.1| ribosome recycling factor [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
Length = 185
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 128/176 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K RME+ + SVR GR+NP++LDK+ VEYYG+ L ++ IN P++ L++ P
Sbjct: 10 KERMEKAVAAYSRELASVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARMLVVTP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+++ IEKAI+ +DLG+TP +DG +IR+ +P LT ERRKEL KVV K AEE KVAVR
Sbjct: 70 YDKTAIGDIEKAILKADLGVTPTSDGTIIRIAIPALTEERRKELVKVVKKYAEEAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N+RRD+ +KL+K ++ED ++ S D+QKLTDEY+ KIDS+ K KEKE+++V
Sbjct: 130 NVRRDSNDDLKKLEKNGDITEDELRASSEDVQKLTDEYVSKIDSVTKDKEKEIMEV 185
>gi|150390448|ref|YP_001320497.1| ribosome recycling factor [Alkaliphilus metalliredigens QYMF]
gi|166991551|sp|A6TRM0.1|RRF_ALKMQ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|149950310|gb|ABR48838.1| ribosome recycling factor [Alkaliphilus metalliredigens QYMF]
Length = 185
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 87/181 (48%), Positives = 140/181 (77%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
+ K ++ +M +T+ +++ +FNS+R G++NP+MLD+I V+YYGS LK +A ++ P+
Sbjct: 5 VHKRLEEKMTKTLGVLKDDFNSIRAGKANPSMLDRITVDYYGSITPLKQVASVSAPEPRL 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L+IQPYD S + IEKA++ SDLG+ P+NDG++IRL +PQLT ERRKEL+KVV + AEEG
Sbjct: 65 LIIQPYDPSVINGIEKALMMSDLGLNPSNDGKIIRLNIPQLTEERRKELTKVVKRVAEEG 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
+VA+RN RRDA + +K++K+ +L+ED++K ++QK+TD++ K++D + +KE E+L+
Sbjct: 125 RVALRNGRRDANEQLKKMEKDSELTEDDLKQAQEEVQKITDKFNKQVDEMLVKKELEILE 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|373485859|ref|ZP_09576541.1| ribosome recycling factor [Holophaga foetida DSM 6591]
gi|372012909|gb|EHP13462.1| ribosome recycling factor [Holophaga foetida DSM 6591]
Length = 191
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 96/184 (52%), Positives = 134/184 (72%), Gaps = 2/184 (1%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
SI + K RM+ +I+ +R +VRTGR+NP++LD I VEYYGS + L +A ++ P+SS
Sbjct: 8 SILAETKKRMKTSIETLRREMATVRTGRANPSILDSIHVEYYGSEMPLTQLASVSVPESS 67
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
+L+IQP+DKSS+K+IE AI+ S+LG+ P NDG VIRL +P LT ERRKEL+KVV + EE
Sbjct: 68 TLVIQPFDKSSIKAIETAILKSELGLNPANDGNVIRLPIPALTEERRKELTKVVHRMGEE 127
Query: 215 GKVAVRNIRRDALKAYEKLQKEKK--LSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKE 272
K A+RN+RRDA +KL+K+K +SED K +QKLTD+++K+ID K K+ E
Sbjct: 128 IKTAIRNVRRDANDDVKKLEKDKNAGVSEDAAKKTLDQIQKLTDDFIKEIDETVKHKDAE 187
Query: 273 LLKV 276
+LKV
Sbjct: 188 ILKV 191
>gi|254526487|ref|ZP_05138539.1| ribosome recycling factor [Prochlorococcus marinus str. MIT 9202]
gi|221537911|gb|EEE40364.1| ribosome recycling factor [Prochlorococcus marinus str. MIT 9202]
Length = 182
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 92/180 (51%), Positives = 138/180 (76%)
Query: 97 EKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSL 156
EK+++ M ++I+ + NFN++RTGR+N ++LD++ VEYYG+ +KS+A I+T DS ++
Sbjct: 3 EKEIQENMNKSIEATQRNFNTIRTGRANASLLDRVSVEYYGAETPIKSLATISTIDSQTI 62
Query: 157 LIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
IQP+D S L++IEK+I SDLG+TPNNDG+VIR+ +P LT ERRKE K+ +K AEEGK
Sbjct: 63 SIQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGK 122
Query: 217 VAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VA+RNIRRDA+ +K +K+ +S D +D S++QK+TD+Y+ I++ +KEKE+LKV
Sbjct: 123 VALRNIRRDAVDKEKKDEKDGLISIDESRDNQSEIQKITDKYIALIETKLSEKEKEILKV 182
>gi|311068174|ref|YP_003973097.1| ribosome recycling factor [Bacillus atrophaeus 1942]
gi|419823845|ref|ZP_14347379.1| ribosome recycling factor [Bacillus atrophaeus C89]
gi|310868691|gb|ADP32166.1| ribosome recycling factor [Bacillus atrophaeus 1942]
gi|388472084|gb|EIM08873.1| ribosome recycling factor [Bacillus atrophaeus C89]
Length = 185
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 90/178 (50%), Positives = 130/178 (73%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ K RME+ + + +VR GR+NP++LDK+ VEYYG+ L ++ IN P++ L+I
Sbjct: 8 ETKERMEKAVAAYQRELATVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARMLVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
PYDK+++ IEKAI+ +DLG+TP +DG +IR+ +P LT ERRKEL K+V K AEE KVA
Sbjct: 68 TPYDKTAIGDIEKAILKADLGVTPTSDGNIIRIAIPALTEERRKELVKLVKKYAEEAKVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRN+RRDA +KL+K ++ED ++ + D+QKLTDEY+ KIDS+ K KEKE+++V
Sbjct: 128 VRNVRRDANDDLKKLEKNGDITEDELRTSNEDVQKLTDEYVSKIDSVTKDKEKEIMEV 185
>gi|304404282|ref|ZP_07385944.1| ribosome recycling factor [Paenibacillus curdlanolyticus YK9]
gi|304347260|gb|EFM13092.1| ribosome recycling factor [Paenibacillus curdlanolyticus YK9]
Length = 184
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 92/182 (50%), Positives = 133/182 (73%), Gaps = 1/182 (0%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
+I+KD + RME+ I ++ + ++R GR+ PA+LD+I+VEYYG+ + +A INTPDS
Sbjct: 4 AIKKDAEERMEKAIGALKRDLATLRAGRATPALLDRIQVEYYGAMTPVNQLANINTPDSR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
+LL+QP+DKSSL +IEKAI+ SDLG+TP+NDG IRL++P LT ERR EL K+ K EE
Sbjct: 64 TLLLQPWDKSSLAAIEKAIMKSDLGLTPSNDGSTIRLSIPALTEERRSELVKLTKKFGEE 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
K+AVRNIRRDA +KL+K+ +SED + D+QK TD ++ ++D + KEKE++
Sbjct: 124 AKIAVRNIRRDANDDIKKLEKD-AISEDESRRHQDDIQKTTDRFVGEVDKVLAAKEKEIM 182
Query: 275 KV 276
+V
Sbjct: 183 EV 184
>gi|257061312|ref|YP_003139200.1| ribosome recycling factor [Cyanothece sp. PCC 8802]
gi|256591478|gb|ACV02365.1| ribosome recycling factor [Cyanothece sp. PCC 8802]
Length = 181
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 88/173 (50%), Positives = 128/173 (73%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M+++++ + +FN++RTGR+N ++LD++ VEYYG L +A I TPD++++ I PYDK
Sbjct: 9 MQKSVEATQRSFNTIRTGRANASLLDRVIVEYYGMETPLNQLANITTPDATTINILPYDK 68
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
S+ +IEKAI SDLG+TPNNDG+VIRL +P LT ERRKEL K+ K AEEGKVA+RNIR
Sbjct: 69 GSMGAIEKAINLSDLGLTPNNDGKVIRLNIPPLTEERRKELVKLAGKLAEEGKVAIRNIR 128
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RD + K +K +SED ++L ++QK+TD++ KID + K KEK+++ V
Sbjct: 129 RDGIDTVRKQEKNNDISEDESRNLQDEIQKITDKFTTKIDELLKVKEKDIMTV 181
>gi|266622994|ref|ZP_06115929.1| ribosome recycling factor [Clostridium hathewayi DSM 13479]
gi|288865250|gb|EFC97548.1| ribosome recycling factor [Clostridium hathewayi DSM 13479]
Length = 184
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 130/174 (74%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +T++++ +++ ++R GR+NP +LDKI+V+YYG+P L+ + IN P++ ++IQP++
Sbjct: 11 KMNKTLEVLESDYMTIRAGRANPHVLDKIKVDYYGTPTPLQQVGNINVPEARMIIIQPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS LK+IEKAI++SDLG+ P NDG VIRL P+LT ERRKEL K V K+ E KVAVRNI
Sbjct: 71 KSLLKAIEKAILTSDLGINPTNDGSVIRLVFPELTEERRKELVKDVKKKGEAAKVAVRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD ++KLQK ++SED++ + D+QKLTD+ + KID + K KELL V
Sbjct: 131 RRDGNDYFKKLQKADEISEDDLAEAEEDIQKLTDKMIGKIDKAIEAKSKELLTV 184
>gi|108804238|ref|YP_644175.1| ribosome recycling factor [Rubrobacter xylanophilus DSM 9941]
gi|123177371|sp|Q1AW65.1|RRF_RUBXD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|108765481|gb|ABG04363.1| ribosome recycling factor [Rubrobacter xylanophilus DSM 9941]
Length = 186
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 88/178 (49%), Positives = 132/178 (74%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + RM+ ++ VR F ++RTGR+NPA+LD+IEVE YG+ + +KS+A I P+ L I
Sbjct: 9 DAERRMKGALEAVRHQFATIRTGRANPALLDRIEVEAYGTRMPIKSVASIGAPEPRLLTI 68
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
PYD + LK+IE+AI SDLG+ P NDG++IRL +P+LT ERR+EL ++V AEEG+V+
Sbjct: 69 TPYDPNLLKTIERAIRDSDLGLNPQNDGKIIRLPIPELTEERRRELIRLVRHMAEEGRVS 128
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRN+RRD + ++L++E ++SED+ + ++LQKLTD Y+K+ID +KE EL++V
Sbjct: 129 VRNVRRDEMHDIQRLRREGEISEDDERRAEAELQKLTDAYIKRIDEALAEKEAELMEV 186
>gi|398310748|ref|ZP_10514222.1| ribosome recycling factor [Bacillus mojavensis RO-H-1]
Length = 185
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 129/176 (73%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +ME+ I + +VR GR+NP++LDK+ VEYYG+ L ++ IN P++ L+I P
Sbjct: 10 KEKMEKAIAAYQRELATVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARMLVITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDKS++ IEKAI+ +DLG+TP +DG +IR+ +P LT ERRKEL KVV K AE+ KVAVR
Sbjct: 70 YDKSAIGDIEKAILKADLGLTPTSDGNMIRIAIPALTEERRKELVKVVKKYAEDAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N+RRDA +KL+K ++ED ++ + D+QKLTDEY+ KIDS+ K KEKE+++V
Sbjct: 130 NVRRDANDDLKKLEKSGDITEDELRASTEDVQKLTDEYVSKIDSVTKDKEKEIMEV 185
>gi|384175394|ref|YP_005556779.1| ribosome recycling factor [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|349594618|gb|AEP90805.1| ribosome recycling factor [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
Length = 185
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 90/176 (51%), Positives = 129/176 (73%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +ME+ I + +VR GR+NP++LDK+ VEYYG+ L ++ IN P++ L+I P
Sbjct: 10 KEKMEKAIAAYQRELATVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARMLVITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+++ IEKAI+ +DLG+TP +DG +IR+ +P LT ERRKEL KV+ K AEE KVAVR
Sbjct: 70 YDKTAIGDIEKAILKADLGLTPTSDGNMIRIAIPALTEERRKELVKVIKKYAEEAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N+RRDA +KL+K ++ED ++ + D+QKLTDEY+ KIDS+ K KEKE+++V
Sbjct: 130 NVRRDANDDLKKLEKNGDITEDELRASTEDVQKLTDEYVSKIDSVTKDKEKEIMEV 185
>gi|284048715|ref|YP_003399054.1| ribosome recycling factor [Acidaminococcus fermentans DSM 20731]
gi|283952936|gb|ADB47739.1| ribosome recycling factor [Acidaminococcus fermentans DSM 20731]
Length = 187
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 92/194 (47%), Positives = 137/194 (70%), Gaps = 7/194 (3%)
Query: 83 CATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSL 142
ATIEE++ + + +M++ + +R ++RTGR+ P++LD+++V+YYG+P +
Sbjct: 1 MATIEELQTK-------TQEKMDKALHALRNELTNIRTGRATPSLLDQVKVDYYGAPTPV 53
Query: 143 KSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRK 202
+A ++ P+ ++IQP+D+S LK IEKAI++SDLG+ PNNDG VIRL LP LT ERRK
Sbjct: 54 TQVANVSVPEPRMIVIQPWDRSLLKVIEKAIMTSDLGLNPNNDGTVIRLNLPLLTEERRK 113
Query: 203 ELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKI 262
EL KVV K+ E +V +RNIRRD A +K K K+++ED+ KD + QKLTD++MKKI
Sbjct: 114 ELVKVVNKKGEASRVEIRNIRRDFNDAVKKQVKAKEITEDDAKDATDFSQKLTDKFMKKI 173
Query: 263 DSIYKQKEKELLKV 276
D + QKEKE++ V
Sbjct: 174 DDVLAQKEKEVMSV 187
>gi|294500908|ref|YP_003564608.1| ribosome recycling factor [Bacillus megaterium QM B1551]
gi|295706254|ref|YP_003599329.1| ribosome recycling factor [Bacillus megaterium DSM 319]
gi|384045241|ref|YP_005493258.1| Ribosome recycling factor [Bacillus megaterium WSH-002]
gi|294350845|gb|ADE71174.1| ribosome recycling factor [Bacillus megaterium QM B1551]
gi|294803913|gb|ADF40979.1| ribosome recycling factor [Bacillus megaterium DSM 319]
gi|345442932|gb|AEN87949.1| Ribosome recycling factor [Bacillus megaterium WSH-002]
Length = 185
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 86/179 (48%), Positives = 134/179 (74%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
++ K RME+ I S+R GR++ ++LD++ VEYYG+P + +AQ++ P++ L+
Sbjct: 7 QNAKERMEKAIQSFSRELASIRAGRASASLLDRVTVEYYGAPTPINQLAQVSVPEARMLV 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQPYDKS + +EKAI+ SDLG+TP +DG +IRL++P LT ERR+EL K+V K AEE KV
Sbjct: 67 IQPYDKSQIGEVEKAILKSDLGLTPTSDGTIIRLSIPALTEERRRELVKMVKKYAEEAKV 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
AVRN+RRDA ++KL+K+ +++ED+++ S D+QKLTD+++ K+D + K KE+E++ V
Sbjct: 127 AVRNVRRDANDDFKKLEKKGEITEDDLRGYSDDIQKLTDDHIVKVDKVAKDKEEEIMAV 185
>gi|78212260|ref|YP_381039.1| ribosome recycling factor [Synechococcus sp. CC9605]
gi|123578616|sp|Q3ALP8.1|RRF_SYNSC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|78196719|gb|ABB34484.1| ribosome recycling factor [Synechococcus sp. CC9605]
Length = 182
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 88/179 (49%), Positives = 133/179 (74%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
+D++A M ++++ + NFN++RTGR+N ++LD+I VEYYG+ LKS+A ++TPDS ++
Sbjct: 4 QDLEASMRKSVEATQRNFNTIRTGRANSSLLDRISVEYYGAETPLKSLATLSTPDSQTIQ 63
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D S+L SIEKAI S+LG TPNNDG++IR+ +P LT ERRKE K+ +K AEEGKV
Sbjct: 64 IQPFDISALASIEKAIAMSELGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKV 123
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RN+RRDA+ +K +KE + SED +D +QK D+++ +++ KE ++LKV
Sbjct: 124 ALRNLRRDAIDKIKKQEKEGEFSEDQSRDEQDGVQKTLDKFIAELEKHLASKEADILKV 182
>gi|308173615|ref|YP_003920320.1| ribosome recycling factor [Bacillus amyloliquefaciens DSM 7]
gi|384164201|ref|YP_005545580.1| ribosome recycling factor [Bacillus amyloliquefaciens LL3]
gi|307606479|emb|CBI42850.1| ribosome recycling factor [Bacillus amyloliquefaciens DSM 7]
gi|328911756|gb|AEB63352.1| ribosome recycling factor [Bacillus amyloliquefaciens LL3]
Length = 185
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 90/176 (51%), Positives = 128/176 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K RME+ + SVR GR+NP++LDK+ VEYYG+ L ++ IN P++ L++ P
Sbjct: 10 KERMEKAVAAYSRELASVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARMLVVTP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+++ IEKAI+ +DLG+TP +DG +IR+ +P LT ERRKEL KVV K AEE KVAVR
Sbjct: 70 YDKTAIGDIEKAILKADLGVTPTSDGTIIRIAIPALTEERRKELVKVVKKYAEEAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N+RRD+ +KL+K ++ED ++ S D+QKLTDE++ KIDS+ K KEKE+++V
Sbjct: 130 NVRRDSNDELKKLEKNGDITEDELRASSEDVQKLTDEFVSKIDSVTKDKEKEIMEV 185
>gi|123965820|ref|YP_001010901.1| ribosome recycling factor [Prochlorococcus marinus str. MIT 9515]
gi|166230816|sp|A2BVI3.1|RRF_PROM5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|123200186|gb|ABM71794.1| Ribosome recycling factor [Prochlorococcus marinus str. MIT 9515]
Length = 182
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 92/180 (51%), Positives = 136/180 (75%)
Query: 97 EKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSL 156
E+++++ M ++++ + NFN++RTGR+N ++LD+I VEYYG+ +KS+A I T DS ++
Sbjct: 3 EQEIQSSMNKSVEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLASIATVDSQTI 62
Query: 157 LIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
IQP+D S L++IEKAI SDLG+TPNNDG+VIR+ +P LT ERRKE K+ +K AEEGK
Sbjct: 63 SIQPFDISCLQAIEKAISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGK 122
Query: 217 VAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VA+RNIRRDA+ +K +KE +S D +D ++QK TD+Y+ I++ +KEKE+LKV
Sbjct: 123 VALRNIRRDAVDKEKKDEKEGLISIDESRDNQLEIQKFTDKYISLIETKLSEKEKEILKV 182
>gi|37519857|ref|NP_923234.1| ribosome recycling factor [Gloeobacter violaceus PCC 7421]
gi|39932053|sp|Q7NNX0.1|RRF_GLOVI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|35210848|dbj|BAC88229.1| ribosome releasing factor [Gloeobacter violaceus PCC 7421]
Length = 182
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 90/173 (52%), Positives = 130/173 (75%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M + I+ NF ++RTGR++ ++LD+I VEYYG P LK++A I TPD+S++LIQPYD
Sbjct: 10 MRKAIEATAGNFATIRTGRASTSLLDRINVEYYGQPTPLKTLATITTPDASTVLIQPYDP 69
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
SSL+ IEK I+ SDLG+ P+NDG+ IRL +P LT+ERRK+L KV+ AEEG+VAVRNIR
Sbjct: 70 SSLRLIEKTILESDLGLPPSNDGKTIRLNIPPLTAERRKDLVKVLRNLAEEGRVAVRNIR 129
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
R A+ K +K+ K+SED + L ++QKLTD+ +++I+ +++ KEKE+ V
Sbjct: 130 RHAIDEVRKEEKDAKVSEDEARRLQDEVQKLTDKSIQQIEKLFEAKEKEITTV 182
>gi|398304227|ref|ZP_10507813.1| ribosome recycling factor [Bacillus vallismortis DV1-F-3]
Length = 185
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 90/176 (51%), Positives = 129/176 (73%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +ME+ I + +VR GR+NP++LDK+ VEYYG+ L ++ IN P++ L++ P
Sbjct: 10 KEKMEKAIAAYQRELATVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARMLVVTP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+++ IEKAI+ +DLG+TP +DG +IR+ +P LT ERRKEL KVV K AEE KVAVR
Sbjct: 70 YDKTAIGDIEKAILKADLGVTPTSDGNMIRIAIPALTEERRKELVKVVKKYAEEAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N+RRDA +KL+K ++ED ++ + D+QKLTDEY+ KIDS+ K KEKE+++V
Sbjct: 130 NVRRDANDDLKKLEKNGDITEDELRASTEDVQKLTDEYVSKIDSVTKDKEKEIMEV 185
>gi|334340439|ref|YP_004545419.1| ribosome recycling factor [Desulfotomaculum ruminis DSM 2154]
gi|334091793|gb|AEG60133.1| ribosome recycling factor [Desulfotomaculum ruminis DSM 2154]
Length = 184
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 90/173 (52%), Positives = 131/173 (75%), Gaps = 1/173 (0%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
+++++++VR F S+R GR+ PA++DK+ V YYG+P L +A I+ P++ +LLIQP+DK
Sbjct: 13 LKKSVEVVRKEFASLRAGRATPALVDKVTVSYYGTPTPLNQLANISVPEARTLLIQPWDK 72
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
S++ IE+AI+ SDLG+TP +DG VIRLT+PQLT ERR EL K V K+AEEG+VA+RN+R
Sbjct: 73 SAMPEIERAILKSDLGITPTSDGTVIRLTIPQLTQERRVELVKSVKKKAEEGRVAIRNVR 132
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RD + QKE + ED VK D+QKLTD+Y+K+ID + K KE+E+++V
Sbjct: 133 RDINDTLKSKQKE-GVPEDEVKRGQDDMQKLTDKYIKEIDEMVKTKEQEIMQV 184
>gi|347542454|ref|YP_004857091.1| ribosome recycling factor [Candidatus Arthromitus sp. SFB-rat-Yit]
gi|346985490|dbj|BAK81165.1| ribosome recycling factor [Candidatus Arthromitus sp. SFB-rat-Yit]
Length = 185
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 92/177 (51%), Positives = 133/177 (75%)
Query: 100 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQ 159
+K +M +TID++ + NSVR GR+NP+MLD+IEVEYYGS + IA I+TP+ +L+IQ
Sbjct: 9 LKEKMLKTIDVLLEDLNSVRVGRANPSMLDRIEVEYYGSMTKINQIANISTPEPRTLMIQ 68
Query: 160 PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAV 219
P++K+ LK IEKAI+ SDLG+ PNNDG +IRLT+P++T E RK +K V K AEE KVA+
Sbjct: 69 PWEKNILKDIEKAILKSDLGLMPNNDGTLIRLTIPEMTEETRKNTAKKVKKIAEESKVAL 128
Query: 220 RNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
R++RRDA + L+KE ++ED++K ++QK TD+++KKID I KEKE++ +
Sbjct: 129 RSLRRDANDKVKSLKKESSITEDDLKKAEDEIQKQTDKFVKKIDEIVVNKEKEIMSI 185
>gi|284044967|ref|YP_003395307.1| ribosome recycling factor [Conexibacter woesei DSM 14684]
gi|283949188|gb|ADB51932.1| ribosome recycling factor [Conexibacter woesei DSM 14684]
Length = 185
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 86/179 (48%), Positives = 132/179 (73%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
+D + RM ++++ R F SVRTGR+ PA+LD+I VEYYG+ LK +A IN P++ L
Sbjct: 7 QDARERMSKSVESTRHEFGSVRTGRATPALLDRIMVEYYGANTPLKQLATINAPEARMLS 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
+QP+DKSS+K+IEKAI+ SD+G+TPNNDG +IRL++P+LT ERR++L KVV AEEG++
Sbjct: 67 VQPFDKSSIKAIEKAIMESDVGLTPNNDGNLIRLSIPELTEERRRQLVKVVRNIAEEGRI 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RN+RRD + +L+ ++ D+ ++LQKLTDE + ++++ K KE+E+L+V
Sbjct: 127 GIRNVRRDTMHDLRELRDAGEVGADDEHRAEAELQKLTDEKVGELETFLKNKEEEILEV 185
>gi|260435842|ref|ZP_05789812.1| ribosome recycling factor [Synechococcus sp. WH 8109]
gi|260413716|gb|EEX07012.1| ribosome recycling factor [Synechococcus sp. WH 8109]
Length = 182
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 88/179 (49%), Positives = 133/179 (74%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
+D++A M ++++ + NFN++RTGR+N ++LD+I VEYYG+ LKS+A ++TPDS ++
Sbjct: 4 QDLEASMRKSVEATQRNFNTIRTGRANSSLLDRISVEYYGADTPLKSLATLSTPDSQTIQ 63
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D S+L SIEKAI S+LG TPNNDG++IR+ +P LT ERRKE K+ +K AEEGKV
Sbjct: 64 IQPFDISALASIEKAIAMSELGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKV 123
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RN+RRDA+ +K +KE + SED +D +QK D+++ +++ KE ++LKV
Sbjct: 124 ALRNLRRDAIDKIKKQEKEGEFSEDQSRDEQDGVQKTLDKFIAELEQHLATKEADVLKV 182
>gi|365174550|ref|ZP_09361992.1| ribosome recycling factor [Synergistes sp. 3_1_syn1]
gi|363614567|gb|EHL66054.1| ribosome recycling factor [Synergistes sp. 3_1_syn1]
Length = 185
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 85/177 (48%), Positives = 137/177 (77%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K++ +R E++I+ ++ + VRTGR++PA++++I+V+Y+G+P +K++ +N P++ ++
Sbjct: 7 KELTSRCEKSIEHLKGSMLGVRTGRAHPALVEEIKVDYFGTPTPIKNMGSVNVPEARQIV 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I P+DK+++K+IEKAI SS LG+TP NDGE IRL LP+LT +RR EL K+V K AEEG+V
Sbjct: 67 ITPWDKTAMKAIEKAIQSSSLGITPQNDGESIRLNLPELTQQRRVELKKMVNKMAEEGRV 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
AVRNIRRDA++ +K++KE K++ED++K + Q TD ++KKIDS+ KE E++
Sbjct: 127 AVRNIRRDAIEILKKMEKESKITEDDLKKFQKEAQDKTDAFIKKIDSVLADKENEIM 183
>gi|253573556|ref|ZP_04850899.1| ribosome recycling factor [Paenibacillus sp. oral taxon 786 str.
D14]
gi|251847084|gb|EES75089.1| ribosome recycling factor [Paenibacillus sp. oral taxon 786 str.
D14]
Length = 184
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 93/182 (51%), Positives = 131/182 (71%), Gaps = 1/182 (0%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
+I+K + RME+ I +R + +++R GR+ P++LD+I+V+YYGSP + +A INTPDS
Sbjct: 4 TIKKHAEERMEKAIQALRRDLSTLRAGRATPSLLDRIQVDYYGSPTPINQLANINTPDSR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
+LLIQP+DKSSL IE+AI SDLG+TP NDG IRLT+P LT ERR EL K+ K EE
Sbjct: 64 TLLIQPWDKSSLSEIERAIQKSDLGLTPANDGSSIRLTIPALTEERRIELVKMTKKFGEE 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
KVA+RNIRRDA +KL+K +SED + D+QK TD+++ ++D + KEKE++
Sbjct: 124 AKVAIRNIRRDANDDIKKLEK-TDISEDESRRHQEDIQKTTDKFIAEVDKVLAAKEKEIM 182
Query: 275 KV 276
+V
Sbjct: 183 EV 184
>gi|296330867|ref|ZP_06873342.1| ribosome recycling factor [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305674385|ref|YP_003866057.1| ribosome recycling factor [Bacillus subtilis subsp. spizizenii str.
W23]
gi|350265967|ref|YP_004877274.1| ribosome recycling factor [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|296151872|gb|EFG92746.1| ribosome recycling factor [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305412629|gb|ADM37748.1| ribosome recycling factor [Bacillus subtilis subsp. spizizenii str.
W23]
gi|349598854|gb|AEP86642.1| ribosome recycling factor [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 185
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 90/176 (51%), Positives = 129/176 (73%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +ME+ I + +VR GR+NP++LDK+ VEYYG+ L ++ IN P++ L++ P
Sbjct: 10 KEKMEKAIAAYQRELATVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARMLVVTP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDKS++ IEKAI+ +DLG+TP +DG +IR+ +P LT ERRKEL KVV K AE+ KVAVR
Sbjct: 70 YDKSAIGDIEKAILKADLGITPTSDGNMIRIAIPALTEERRKELVKVVKKYAEDAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N+RRDA +KL+K ++ED ++ + D+QKLTDEY+ KIDS+ K KEKE+++V
Sbjct: 130 NVRRDANDDLKKLEKNGDITEDELRASTEDVQKLTDEYVSKIDSVTKDKEKEIMEV 185
>gi|157412937|ref|YP_001483803.1| ribosome recycling factor [Prochlorococcus marinus str. MIT 9215]
gi|166991558|sp|A8G3N6.1|RRF_PROM2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|157387512|gb|ABV50217.1| Ribosome recycling factor [Prochlorococcus marinus str. MIT 9215]
Length = 182
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 91/180 (50%), Positives = 138/180 (76%)
Query: 97 EKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSL 156
EK+++ M ++I+ + NFN++RTGR+N ++LD++ V+YYG+ +KS+A I+T DS ++
Sbjct: 3 EKEIQENMNKSIEATQRNFNTIRTGRANASLLDRVSVDYYGAETPIKSLATISTIDSQTI 62
Query: 157 LIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
IQP+D S L++IEK+I SDLG+TPNNDG+VIR+ +P LT ERRKE K+ +K AEEGK
Sbjct: 63 SIQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGK 122
Query: 217 VAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VA+RNIRRDA+ +K +K+ +S D +D S++QK+TD+Y+ I++ +KEKE+LKV
Sbjct: 123 VALRNIRRDAVDKEKKDEKDGLISIDESRDNQSEIQKITDKYIALIETKLSEKEKEILKV 182
>gi|312111646|ref|YP_003989962.1| ribosome recycling factor [Geobacillus sp. Y4.1MC1]
gi|336236021|ref|YP_004588637.1| ribosome recycling factor [Geobacillus thermoglucosidasius
C56-YS93]
gi|423720565|ref|ZP_17694747.1| ribosome recycling factor [Geobacillus thermoglucosidans
TNO-09.020]
gi|311216747|gb|ADP75351.1| ribosome recycling factor [Geobacillus sp. Y4.1MC1]
gi|335362876|gb|AEH48556.1| ribosome recycling factor [Geobacillus thermoglucosidasius
C56-YS93]
gi|383365918|gb|EID43209.1| ribosome recycling factor [Geobacillus thermoglucosidans
TNO-09.020]
Length = 185
Score = 189 bits (481), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 89/176 (50%), Positives = 132/176 (75%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +M++ + ++R GR+NP++L+KI V+YYG+P + +A I+ P++ L+IQP
Sbjct: 10 KEKMDKAVQAFTRELATIRAGRANPSLLEKITVDYYGAPTPIIQLASISAPEARLLVIQP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDKS +K IEKAI+SSDLG+TP+NDG VIR+ +P LT ERR+EL K+V K +E+ KVAVR
Sbjct: 70 YDKSVIKDIEKAILSSDLGLTPSNDGSVIRIAIPPLTEERRRELVKLVKKYSEDAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRRDA +KL+K +++ED ++ D+QKLTD ++ KID+I K+KEKE+++V
Sbjct: 130 NIRRDANDELKKLEKNGEITEDELRGYIDDIQKLTDNHIAKIDTITKEKEKEVMEV 185
>gi|167770609|ref|ZP_02442662.1| hypothetical protein ANACOL_01955 [Anaerotruncus colihominis DSM
17241]
gi|167667204|gb|EDS11334.1| ribosome recycling factor [Anaerotruncus colihominis DSM 17241]
Length = 184
Score = 189 bits (481), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 133/174 (76%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+ME+TI ++ ++++R GR+NPA+LDKI V+YYG+P ++++A I+ ++ L+IQP+D
Sbjct: 11 KMEKTIRVLENEYSAIRAGRANPAVLDKITVDYYGTPTQIQAMAAISVSEARILVIQPWD 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS+L+ IEKAI +SD+G+ P NDG VIR+ P LT ERRKE+ K + KQ E+ KVA+R+I
Sbjct: 71 KSTLRPIEKAIQASDIGINPTNDGTVIRIVFPPLTEERRKEICKQIKKQGEDSKVAIRSI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA + ++ L+K ++SED KDL +QK+TD++ K+ID I +KEKE+L++
Sbjct: 131 RRDANEKFKALKKSSEVSEDEEKDLEDQMQKMTDKFCKRIDEIAAKKEKEILEI 184
>gi|299144039|ref|ZP_07037119.1| ribosome recycling factor [Peptoniphilus sp. oral taxon 386 str.
F0131]
gi|298518524|gb|EFI42263.1| ribosome recycling factor [Peptoniphilus sp. oral taxon 386 str.
F0131]
Length = 185
Score = 189 bits (481), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 89/181 (49%), Positives = 134/181 (74%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I+KD + +M++TI + R + S+R GR+NP++LDKI V+YYG L +A I+ P+
Sbjct: 5 IKKDAEEKMKKTISVYREDLQSIRAGRANPSLLDKITVDYYGQATPLNQVAGISAPEPRL 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L I P+D S + +IEKAI+ S+LG+TP+NDG+++RL +P LT ERRKEL+K+V K E
Sbjct: 65 LAITPWDASLIPAIEKAILKSELGITPSNDGKIVRLLIPHLTEERRKELTKIVRKNGENA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVA+RNIRRD++ +KL+K K++SED+ KD +QKLTD+Y++++D I K KE EL++
Sbjct: 125 KVAIRNIRRDSIDEVKKLEKSKEISEDDRKDGEEQIQKLTDKYIEELDKITKSKEDELME 184
Query: 276 V 276
+
Sbjct: 185 I 185
>gi|15614987|ref|NP_243290.1| ribosome recycling factor [Bacillus halodurans C-125]
gi|14195173|sp|Q9KA66.3|RRF_BACHD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|10175044|dbj|BAB06143.1| ribosome recycling factor [Bacillus halodurans C-125]
Length = 185
Score = 189 bits (481), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 91/178 (51%), Positives = 133/178 (74%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + RM + + + +R GR+NPAMLD+I VEYYG+ L +A I+ P++ L+I
Sbjct: 8 DAEQRMTKATEALGRELAKLRAGRANPAMLDRITVEYYGAETPLNQLATISVPEARLLVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+DKSS+ IE+AI SDLG+TP+NDG VIR+T+P LT ERR++L+K+V K AEE KVA
Sbjct: 68 QPFDKSSISDIERAIQKSDLGLTPSNDGTVIRITIPPLTEERRRDLTKLVKKSAEEAKVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRNIRRDA +K QK+ +L+ED+++ ++ D+QKLTD+Y+++ID + KEKE+++V
Sbjct: 128 VRNIRRDANDDLKKRQKDGELTEDDLRRVTEDVQKLTDKYIEQIDQKAEAKEKEIMEV 185
>gi|389815289|ref|ZP_10206635.1| ribosome recycling factor [Planococcus antarcticus DSM 14505]
gi|388466068|gb|EIM08377.1| ribosome recycling factor [Planococcus antarcticus DSM 14505]
Length = 185
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 89/182 (48%), Positives = 134/182 (73%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
S+ D K++M I + +S+R GR+ P++LDK+ ++YYGSP + +A I+ P++
Sbjct: 4 SVMNDTKSKMTNAIQAFSRDLSSIRAGRATPSILDKLTIDYYGSPTPVNQVAGISIPEAR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
++IQPYDKS L IEKAI+ SDLG++P+NDG VIRL +P LT ERRK+L+K V K+AEE
Sbjct: 64 LIMIQPYDKSVLGDIEKAILKSDLGLSPSNDGSVIRLAVPALTEERRKDLAKQVKKEAEE 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
KV +RNIRRDA ++KL+K+ +++ D+++ S D+QKLTD+ + KID + K KEKE++
Sbjct: 124 AKVGIRNIRRDANDEFKKLEKKSEITVDDLRGYSDDVQKLTDDNITKIDELAKGKEKEIM 183
Query: 275 KV 276
+V
Sbjct: 184 EV 185
>gi|365157169|ref|ZP_09353450.1| ribosome-recycling factor [Bacillus smithii 7_3_47FAA]
gi|363625903|gb|EHL76914.1| ribosome-recycling factor [Bacillus smithii 7_3_47FAA]
Length = 185
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 88/176 (50%), Positives = 134/176 (76%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +M + I + ++R GR+N ++LDK+ V+YYG+P + +A I+ P++ L+IQP
Sbjct: 10 KDKMSKAIQALSRELATIRAGRANASLLDKVVVDYYGAPTPVNQLASISVPEARLLVIQP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDKS + +EKAI+ SDLG+TP +DG VIR+T+P LT ERRKEL K+V K+AEE KVAVR
Sbjct: 70 YDKSVVGEVEKAILKSDLGLTPTSDGSVIRITIPPLTEERRKELVKLVRKEAEEAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N+RRDA + +KL+K +++ED+++ + D+QK+TDE++KKID + K+KEKE+++V
Sbjct: 130 NVRRDANEDLKKLEKNGEITEDDLRGYTEDVQKITDEHVKKIDDMAKKKEKEIMEV 185
>gi|313888244|ref|ZP_07821915.1| ribosome recycling factor [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845647|gb|EFR33037.1| ribosome recycling factor [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 185
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 89/183 (48%), Positives = 137/183 (74%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S ++K+ ++RM ++ID + + S+R GR+N ++LD+I V+YYG L +A ++ P++
Sbjct: 3 SDLKKNTESRMSKSIDSLTESLQSIRAGRANTSLLDRIYVDYYGQQSPLNQVASLSAPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
L IQP+D + + IEKAI SDLG+TP+NDG++IRL +PQLT ERRK+L+K+V K AE
Sbjct: 63 RLLAIQPWDATLIPEIEKAIQKSDLGITPSNDGKIIRLVIPQLTEERRKDLTKLVGKYAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
E KV++RNIRRDA++ +K +K K++SED+ K D+QKLTD+Y+K +DS+ KEKEL
Sbjct: 123 EAKVSIRNIRRDAMEDIKKAEKAKEISEDDRKTYEEDIQKLTDKYIKDVDSVAADKEKEL 182
Query: 274 LKV 276
+++
Sbjct: 183 MEI 185
>gi|347548704|ref|YP_004855032.1| putative ribosome recycling factors [Listeria ivanovii subsp.
ivanovii PAM 55]
gi|346981775|emb|CBW85748.1| Putative ribosome recycling factors [Listeria ivanovii subsp.
ivanovii PAM 55]
Length = 185
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 92/176 (52%), Positives = 129/176 (73%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +ME+ + ++R GR+N ++LD++ V+YYG+P + +A I+ P++ LLI P
Sbjct: 10 KEKMEKAEQALTRQLGTIRAGRANASLLDRLTVDYYGAPTPVNQMASISVPEARMLLITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+ L IEKAI+ SDLG+TPNNDG V+RL++PQLT ERRKEL K V K+AEE KVAVR
Sbjct: 70 YDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRR+A + +KL+K ++ED+++ D+QKLTDE +K IDSI K KE E+L+V
Sbjct: 130 NIRREANEDLKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITKDKEAEILEV 185
>gi|300866975|ref|ZP_07111646.1| Ribosome-recycling factor [Oscillatoria sp. PCC 6506]
gi|300335010|emb|CBN56812.1| Ribosome-recycling factor [Oscillatoria sp. PCC 6506]
Length = 182
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/170 (50%), Positives = 133/170 (78%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M++ ++ + +FN++RTGR+N ++LD++ V+YYGSP +KS+A I+TPD+S++ IQP+D+
Sbjct: 10 MQKAVESTQRSFNTIRTGRANASLLDRVMVDYYGSPTPIKSLASISTPDASTINIQPFDR 69
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
++ IEKAI SD+G+TP+NDG VIRL +P LT++RR EL K+ AK +EEGKV++RNIR
Sbjct: 70 KTINLIEKAISLSDVGLTPSNDGSVIRLNIPPLTTDRRLELVKLAAKFSEEGKVSIRNIR 129
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
RDA+++ K +K +LS+D +DL +QKLTD+Y+ KI+ + KEK++
Sbjct: 130 RDAVESIRKQEKSSELSKDEARDLQDKMQKLTDKYIAKIEEVLAAKEKDI 179
>gi|259046749|ref|ZP_05737150.1| ribosome recycling factor [Granulicatella adiacens ATCC 49175]
gi|259036645|gb|EEW37900.1| ribosome recycling factor [Granulicatella adiacens ATCC 49175]
Length = 186
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 93/183 (50%), Positives = 131/183 (71%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S I K RM+++ D ++ S+R GR+N ++LD++EVEYYG+ + +A I P++
Sbjct: 4 SEILAHTKERMKKSEDALQRELGSIRAGRANASLLDRLEVEYYGALTPVNQLASITVPEA 63
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LLI PYDKSSL IE+AI+ SD+G+TP +DG VIRL +PQLT ERRKEL+K V K+AE
Sbjct: 64 RMLLITPYDKSSLNDIERAILMSDIGITPTSDGSVIRLIIPQLTEERRKELAKQVGKEAE 123
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
KV+VRNIRRDA+ +K +K K+++ED + L D+QK+TD+ +K ID + KEKEL
Sbjct: 124 NAKVSVRNIRRDAIDQAKKAEKAKEITEDELHTLEKDIQKVTDDSVKNIDKLAATKEKEL 183
Query: 274 LKV 276
L+V
Sbjct: 184 LEV 186
>gi|303228555|ref|ZP_07315383.1| ribosome recycling factor [Veillonella atypica ACS-134-V-Col7a]
gi|303232131|ref|ZP_07318834.1| ribosome recycling factor [Veillonella atypica ACS-049-V-Sch6]
gi|401679884|ref|ZP_10811808.1| ribosome recycling factor [Veillonella sp. ACP1]
gi|429759379|ref|ZP_19291878.1| ribosome recycling factor [Veillonella atypica KON]
gi|302513237|gb|EFL55276.1| ribosome recycling factor [Veillonella atypica ACS-049-V-Sch6]
gi|302516802|gb|EFL58716.1| ribosome recycling factor [Veillonella atypica ACS-134-V-Col7a]
gi|400219011|gb|EJO49882.1| ribosome recycling factor [Veillonella sp. ACP1]
gi|429179655|gb|EKY20894.1| ribosome recycling factor [Veillonella atypica KON]
Length = 186
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 92/174 (52%), Positives = 130/174 (74%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM ++I+ ++ F S+RTGR++ A+LDK+ V+YYGSP + +A I+ P+ +LI P+D
Sbjct: 13 RMNKSIESLKHEFASIRTGRASTALLDKVMVDYYGSPTPINQVANISVPEPRMILIAPWD 72
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS + +IEKAI+ SDLG+ P NDG IRLT+PQLT ERRKE+ KVV K+AE+ KVAVRNI
Sbjct: 73 KSMIGAIEKAILQSDLGLNPGNDGTAIRLTIPQLTEERRKEIVKVVHKKAEDAKVAVRNI 132
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA A +K +K K ++ED+ KD +QKLTD+ +K+ID + KEK++L+V
Sbjct: 133 RRDANDALKKEEKAKTITEDDAKDGLDQIQKLTDKKIKQIDELKAVKEKDVLEV 186
>gi|167630327|ref|YP_001680826.1| ribosome recycling factor [Heliobacterium modesticaldum Ice1]
gi|238687988|sp|B0THE0.1|RRF_HELMI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|167593067|gb|ABZ84815.1| ribosome recycling factor [Heliobacterium modesticaldum Ice1]
Length = 185
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 137/183 (74%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I+K+ + +M++T++ +R + +R GR+NPA+L+K+ VEYYG+P + +A I+ P++
Sbjct: 3 NEIKKETEDKMKKTVEALRKEYQHIRAGRANPALLEKVTVEYYGAPTPVNQLANISAPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
L+IQP+DKS L ++EKAI+ SDLG+TP +DG VIRL +PQLT ERR EL K V K+AE
Sbjct: 63 RLLVIQPWDKSVLPALEKAILKSDLGLTPTSDGAVIRLVIPQLTQERRSELVKTVKKRAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
E +V +RN+RRDA + + LQKE +SED K ++QKLTD+Y++++D + ++KE E+
Sbjct: 123 EHRVILRNLRRDANEDVKDLQKEHIISEDEGKRAQEEIQKLTDKYIREVDQVAERKEAEI 182
Query: 274 LKV 276
++V
Sbjct: 183 MEV 185
>gi|335429738|ref|ZP_08556636.1| ribosome recycling factor [Haloplasma contractile SSD-17B]
gi|334889748|gb|EGM28033.1| ribosome recycling factor [Haloplasma contractile SSD-17B]
Length = 185
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 131/174 (75%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M+++I+ +R +VRTGR+NP++LD++ V YYG+P L +A I P++ LLI+PYD
Sbjct: 12 KMDKSIESLRHELATVRTGRANPSLLDRVSVVYYGAPSPLNQVASITVPEARQLLIKPYD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS L IE+AI ++LG+ PNNDG +IR+++P LT ERRKEL+KVV K EEGKVA+RN+
Sbjct: 72 KSILGDIERAINEANLGLNPNNDGNIIRISIPSLTEERRKELAKVVHKYGEEGKVAIRNV 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD+ A +K+ K L++D++K D+Q+LTD+Y+ KI+++ +KE++L+ V
Sbjct: 132 RRDSNDALKKMNKNGDLTDDDLKGYQDDVQELTDQYISKIENMVSEKEQDLMTV 185
>gi|158320548|ref|YP_001513055.1| ribosome recycling factor [Alkaliphilus oremlandii OhILAs]
gi|166991552|sp|A8MHH2.1|RRF_ALKOO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|158140747|gb|ABW19059.1| ribosome recycling factor [Alkaliphilus oremlandii OhILAs]
Length = 185
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 89/184 (48%), Positives = 137/184 (74%)
Query: 93 KSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPD 152
K I K+++ +M +TI+ ++ S+R GR+NPAMLD+I VEYYGSP +K IA I P+
Sbjct: 2 KMEIHKNLEEKMNKTINALKDELASIRAGRANPAMLDRIVVEYYGSPTPIKQIAAITAPE 61
Query: 153 SSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQA 212
+ IQPYD S+L SIEKAI+ SDLG+ P+NDG++IR+ +PQLT ERRKEL+KV K +
Sbjct: 62 PRIISIQPYDGSALSSIEKAILQSDLGVNPSNDGKLIRIIVPQLTEERRKELTKVAKKTS 121
Query: 213 EEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKE 272
E+ KV +RN RR+A +K+QK+ +++ED +K ++QK+TD+++K +D + ++KEK+
Sbjct: 122 EDAKVVLRNERRNANDRLKKMQKDNEITEDELKTAQDEVQKITDKFIKMVDELTEKKEKD 181
Query: 273 LLKV 276
+++V
Sbjct: 182 IMEV 185
>gi|410658726|ref|YP_006911097.1| Ribosome recycling factor [Dehalobacter sp. DCA]
gi|410661715|ref|YP_006914086.1| Ribosome recycling factor [Dehalobacter sp. CF]
gi|409021081|gb|AFV03112.1| Ribosome recycling factor [Dehalobacter sp. DCA]
gi|409024071|gb|AFV06101.1| Ribosome recycling factor [Dehalobacter sp. CF]
Length = 185
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 90/178 (50%), Positives = 133/178 (74%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + +M +T ++++ + SVR GR+NPA+LDK+ V+YYG+P + +A ++ PD + I
Sbjct: 8 DAEEKMHKTEEVLKKDLASVRAGRANPAVLDKVSVDYYGTPTPINQLANVSVPDPRMITI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+DKSS+K IEKAI+ SDLG+ P+NDG VIRL +PQLT+ERR E+ K V K+AE+ KVA
Sbjct: 68 QPWDKSSIKDIEKAILKSDLGLMPSNDGMVIRLNIPQLTAERRAEIVKTVKKKAEDAKVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRNIRR+ + ++L+K+K +SED+ K QKLTD+ +K ID I ++KEKE+++V
Sbjct: 128 VRNIRRELIDEIKQLEKDKTVSEDDSKKGQEKAQKLTDKTVKDIDEILEKKEKEIMEV 185
>gi|159901469|ref|YP_001547716.1| ribosome recycling factor [Herpetosiphon aurantiacus DSM 785]
gi|159894508|gb|ABX07588.1| ribosome recycling factor [Herpetosiphon aurantiacus DSM 785]
Length = 192
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 88/179 (49%), Positives = 136/179 (75%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
+D +++M+++ID +R +VRTGR++PA+++ ++VEYYGS + L +A I TP+S +
Sbjct: 14 RDAESKMKKSIDSLRHTLGAVRTGRASPALVEDLKVEYYGSEMPLNQLANIATPESRMIT 73
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQPYD+ ++K+IEKAI +S+LG+ P+NDG VIRL +PQLT ERRKEL K V + E+GKV
Sbjct: 74 IQPYDQGAIKAIEKAIQNSELGINPSNDGRVIRLAIPQLTQERRKELVKQVKAKVEDGKV 133
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RN+RR+A A KLQ++K +SED+ + +LQKLTD + K++++I KE E+++V
Sbjct: 134 AIRNVRREAQDAIRKLQQDKAISEDDERRGQEELQKLTDRFQKEVETIGTTKEAEVMEV 192
>gi|164687908|ref|ZP_02211936.1| hypothetical protein CLOBAR_01553 [Clostridium bartlettii DSM
16795]
gi|164602321|gb|EDQ95786.1| ribosome recycling factor [Clostridium bartlettii DSM 16795]
Length = 184
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 90/181 (49%), Positives = 135/181 (74%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
+EK ++A+M++TI+ ++ F+++R GR+N MLDKI V+YYG+P + I I+ P+ +
Sbjct: 4 LEKKLQAQMDKTIEALKYEFSTIRAGRANAQMLDKIRVDYYGTPTPINQIGSISVPEPRT 63
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L+I P+DKS++K IEKAI++SDLG+ P NDG+VIRL +P LT ERR EL+K K AEE
Sbjct: 64 LVINPWDKSAMKEIEKAIMNSDLGLNPTNDGDVIRLNVPALTEERRIELTKKAKKAAEEF 123
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KV +RN RRDA +K+QK+ +++ED +K D+QKLTD+Y+K+IDS+ KEK+++
Sbjct: 124 KVRIRNERRDANDKLKKMQKDGEITEDELKRGQEDVQKLTDKYIKEIDSLLAVKEKDIMA 183
Query: 276 V 276
V
Sbjct: 184 V 184
>gi|374582861|ref|ZP_09655955.1| ribosome recycling factor [Desulfosporosinus youngiae DSM 17734]
gi|374418943|gb|EHQ91378.1| ribosome recycling factor [Desulfosporosinus youngiae DSM 17734]
Length = 185
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/183 (48%), Positives = 134/183 (73%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S + KD RM + +D +R + S+R GR+NP++LDK+ VEYYG+P + +A I+ P++
Sbjct: 3 SEVIKDADERMHKGVDALRREYASIRAGRANPSVLDKVLVEYYGTPTPINQLANISAPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
L+IQP+D+S L +IEKAI+ SDLG+ P++DG VIRL +PQLTSERR EL K V K+AE
Sbjct: 63 RLLMIQPWDRSVLPAIEKAIMKSDLGLNPSSDGSVIRLMIPQLTSERRVELVKAVKKKAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
E +V+VRN+RRD +KL+K+ + SED VK ++QK+TD+ +K+I+ + + KE E+
Sbjct: 123 EARVSVRNVRRDVNDQLKKLEKDHEASEDEVKRAQEEVQKMTDKIIKEIERVMEAKESEI 182
Query: 274 LKV 276
++V
Sbjct: 183 MEV 185
>gi|254421634|ref|ZP_05035352.1| ribosome recycling factor [Synechococcus sp. PCC 7335]
gi|196189123|gb|EDX84087.1| ribosome recycling factor [Synechococcus sp. PCC 7335]
Length = 185
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 86/178 (48%), Positives = 133/178 (74%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V++ M++ ++ + FN++RTGR++ ++LD+I V+YYGSP SLKS+A I TPD+S+L+I
Sbjct: 8 EVESAMQKAVESTKRAFNTIRTGRASASLLDRIMVDYYGSPTSLKSLANITTPDASTLMI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
Q +D SS++ I KAI SD+G+ PN DG +IRL +P LT+ERR+E +K+ K AEEG+V+
Sbjct: 68 QAFDPSSVQLIAKAISMSDVGLVPNTDGALIRLNIPPLTTERRQEFAKLAGKYAEEGRVS 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRN+RRD + +K +K+ ++SED +D+ ++QKLTD+Y K+ID KEK + V
Sbjct: 128 VRNVRRDGIDLAKKQEKDGEISEDESRDMQDEVQKLTDKYTKQIDEALADKEKAIQTV 185
>gi|51892632|ref|YP_075323.1| ribosome recycling factor [Symbiobacterium thermophilum IAM 14863]
gi|60390686|sp|Q67PB4.1|RRF_SYMTH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|51856321|dbj|BAD40479.1| ribosome recycling factor [Symbiobacterium thermophilum IAM 14863]
Length = 185
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/181 (49%), Positives = 135/181 (74%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I KD + RM++ +++ R +R R+ PA+LDK+ VE YGS V + ++A I PD +
Sbjct: 5 IIKDAEERMKKAVEVFRQELAGMRANRATPALLDKVRVEAYGSEVPVNNVATIEVPDPRT 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L+I+P+D+S +K+IE+AI +SDLG+ P NDG+VIRL++P +T ERR+EL KVVAK+ EE
Sbjct: 65 LVIKPWDRSLIKAIERAINASDLGLNPTNDGQVIRLSIPPMTEERRRELVKVVAKRTEEQ 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
+VA+RNIRRDA + +KL+K+K +SED K ++QKLTD+Y+K++D + KEKE+++
Sbjct: 125 RVAIRNIRRDANEQIKKLEKDKAVSEDESKRAQDEVQKLTDKYIKEVDQLMAAKEKEIME 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|89098609|ref|ZP_01171491.1| ribosome recycling factor [Bacillus sp. NRRL B-14911]
gi|89086571|gb|EAR65690.1| ribosome recycling factor [Bacillus sp. NRRL B-14911]
Length = 185
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 90/176 (51%), Positives = 129/176 (73%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K RM + I S+R GR++ ++LD+I V+YYG+P + +A I+ P++ L+IQP
Sbjct: 10 KERMTKAIQAYSRELASIRAGRASASLLDRITVDYYGAPTPVNQLAGISVPEARLLVIQP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDKS L IEKAI+ SDLG+ P NDG ++RL +P LT ERRKEL KVV K++E+ KVA+R
Sbjct: 70 YDKSILGEIEKAIIKSDLGLNPTNDGNLLRLAIPALTEERRKELVKVVKKESEDAKVAIR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRRDA +KL+K +++ED+++ S D+QK+TDE++ K+DSI K KEKE+L+V
Sbjct: 130 NIRRDANDDLKKLEKNGEITEDDLRGYSDDIQKMTDEHITKVDSITKDKEKEILEV 185
>gi|342213665|ref|ZP_08706388.1| ribosome recycling factor [Veillonella sp. oral taxon 780 str.
F0422]
gi|341597753|gb|EGS40292.1| ribosome recycling factor [Veillonella sp. oral taxon 780 str.
F0422]
Length = 186
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 132/176 (75%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
+ARM++TI+ ++ F +VRTGR++ ++LD + V+YYG+P + +A ++ PD +LI P
Sbjct: 11 EARMDKTIESLKHEFANVRTGRAHTSLLDSVMVDYYGAPTPVNQVANVSAPDPRMILIAP 70
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
+DK+ + +IEKAI++SDLG+ PNNDGE IRL +PQLT ERRKEL KVV+K+AE+ KVAVR
Sbjct: 71 WDKTMIGAIEKAILTSDLGLNPNNDGEAIRLAIPQLTEERRKELVKVVSKKAEDAKVAVR 130
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRRDA A +K +K K ++ED KD +QKLTD+ +K ID + KEK+++ V
Sbjct: 131 NIRRDANDAIKKEEKAKTITEDVSKDGQEQVQKLTDKKIKLIDELRDIKEKDVMSV 186
>gi|381182723|ref|ZP_09891513.1| ribosome recycling factor [Listeriaceae bacterium TTU M1-001]
gi|380317378|gb|EIA20707.1| ribosome recycling factor [Listeriaceae bacterium TTU M1-001]
Length = 185
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/176 (50%), Positives = 129/176 (73%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +ME+ + +R GR+N ++LD+++VEYYG+P L +A I+ P++ LLI P
Sbjct: 10 KEKMEKAEQALVRTLGQIRAGRANASILDRVQVEYYGAPTPLNQMASISIPEARMLLITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
+DK+ + IEKAI+ SDLG+TPNNDG V+RLT+PQLT ERR+EL+K V K+AEE KVAVR
Sbjct: 70 FDKNVIGDIEKAILKSDLGLTPNNDGSVLRLTIPQLTEERRRELAKEVKKEAEEAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N+RRDA +K++K ++ED++++ + D+QKLTD +K ID I K KE E+L+V
Sbjct: 130 NVRRDANDELKKIEKAGDITEDDLRNYTEDVQKLTDTSIKNIDEIAKNKEAEILEV 185
>gi|291533215|emb|CBL06328.1| ribosome recycling factor [Megamonas hypermegale ART12/1]
Length = 185
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 90/174 (51%), Positives = 128/174 (73%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM++T+ ++ F S+R GR+ PA+LDK+ VEYYGS V + + I+ P+ +LIQP++
Sbjct: 12 RMKKTLSAAKSEFASLRAGRATPALLDKVMVEYYGSLVPVNQVGNISVPEPRMILIQPWE 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K L IEKAI SDLG++PNNDG VIRL +PQLT ERR +L K + K+AEE KV+VRNI
Sbjct: 72 KPMLHEIEKAITRSDLGLSPNNDGTVIRLNIPQLTEERRTDLVKTLNKRAEESKVSVRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA +A +KL+K K ++ED+ K D+QK+ D+Y+K+ID +KEKE+++V
Sbjct: 132 RRDANEAIKKLEKAKSITEDDAKKAQEDIQKIVDKYIKEIDIARAEKEKEIMEV 185
>gi|333370999|ref|ZP_08462967.1| ribosome recycling factor [Desmospora sp. 8437]
gi|332976811|gb|EGK13639.1| ribosome recycling factor [Desmospora sp. 8437]
Length = 185
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 88/183 (48%), Positives = 133/183 (72%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+++++D RME+ I ++ S+R GR+ P++LDK+ VE YGS + L +A I+TP+
Sbjct: 3 AAVKEDANQRMEKAIQALKRELASIRAGRATPSLLDKVTVECYGSEMPLNQLANISTPEP 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
L++QP+DKS+L +E+AI+ SDLG+TPNNDG +IR+T+P LT ERR EL KVV K E
Sbjct: 63 RLLVVQPWDKSTLGDVERAILKSDLGLTPNNDGNLIRITIPALTEERRGELVKVVKKTGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
E KVA+RNIRRDA +KL+K+ +LSED + ++QKLTD ++++ D + + KEKE+
Sbjct: 123 EAKVAIRNIRRDANDEMKKLEKKGELSEDEARRGQDEIQKLTDRFIQETDKVVETKEKEI 182
Query: 274 LKV 276
++V
Sbjct: 183 MEV 185
>gi|374307840|ref|YP_005054271.1| ribosome recycling factor [Filifactor alocis ATCC 35896]
gi|291166148|gb|EFE28194.1| ribosome recycling factor [Filifactor alocis ATCC 35896]
Length = 185
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 131/174 (75%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +TI +++ + +R GR+NPAMLDKI V+YYGS LK +A I++PD +++IQP+D
Sbjct: 12 KMTKTISVLKEELSVIRAGRANPAMLDKISVDYYGSQTPLKQMAGISSPDPRTIVIQPWD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K++LK IEKAI++SDLG P+NDGEVIR+ +PQLT ERRKEL K+V+K E+ KVA+RN
Sbjct: 72 KTALKEIEKAILASDLGFNPSNDGEVIRINIPQLTEERRKELVKLVSKTGEQSKVALRNA 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD +K++K+ +L ED+ K ++Q + D+Y K+IDS+ +KE E++++
Sbjct: 132 RRDTNDKIKKIEKDGELGEDDAKKALDEVQHIIDKYTKEIDSVVAKKEAEIMEI 185
>gi|251797408|ref|YP_003012139.1| ribosome recycling factor [Paenibacillus sp. JDR-2]
gi|247545034|gb|ACT02053.1| ribosome recycling factor [Paenibacillus sp. JDR-2]
Length = 184
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 90/182 (49%), Positives = 129/182 (70%), Gaps = 1/182 (0%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
+I+K + RME+ I ++ + ++R GR+ PA+LD+++VEYYG+P + +A IN PDS
Sbjct: 4 AIKKSAEERMEKAIGALKRDLATLRAGRATPALLDRVQVEYYGAPTPVAQLANINVPDSR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
+L IQP+DKSS+ +IEKAI+ SDLG+TP+NDG IR+TLP LT ERR EL K K EE
Sbjct: 64 TLFIQPWDKSSIAAIEKAIMKSDLGLTPSNDGSAIRITLPPLTEERRSELVKTTKKFGEE 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
KVA+RNIRRDA +KL+K +SED + D+QK TD ++ ++D + KEKE++
Sbjct: 124 AKVAIRNIRRDANDDIKKLEK-TTISEDESRRHQEDIQKATDRFIAEVDKVLVAKEKEIM 182
Query: 275 KV 276
+V
Sbjct: 183 EV 184
>gi|392960425|ref|ZP_10325893.1| Ribosome-recycling factor [Pelosinus fermentans DSM 17108]
gi|421054818|ref|ZP_15517783.1| ribosome recycling factor [Pelosinus fermentans B4]
gi|421058898|ref|ZP_15521543.1| Ribosome-recycling factor [Pelosinus fermentans B3]
gi|421064787|ref|ZP_15526626.1| Ribosome-recycling factor [Pelosinus fermentans A12]
gi|421071680|ref|ZP_15532796.1| Ribosome-recycling factor [Pelosinus fermentans A11]
gi|392440499|gb|EIW18179.1| ribosome recycling factor [Pelosinus fermentans B4]
gi|392446945|gb|EIW24216.1| Ribosome-recycling factor [Pelosinus fermentans A11]
gi|392455002|gb|EIW31809.1| Ribosome-recycling factor [Pelosinus fermentans DSM 17108]
gi|392459940|gb|EIW36300.1| Ribosome-recycling factor [Pelosinus fermentans B3]
gi|392460383|gb|EIW36691.1| Ribosome-recycling factor [Pelosinus fermentans A12]
Length = 186
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 130/174 (74%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++ ID +R +++R GR+ PA+LDKI V+YYG+P + +A I P+ + IQ ++
Sbjct: 13 KMKKAIDALRRELSTLRAGRATPALLDKITVDYYGTPTPINQVANIAVPEPRMITIQAWE 72
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS + IEKAI+ SDLG+TPN+DG VIRL +PQLT +RR EL KVV K+AE+ ++ +RN
Sbjct: 73 KSMIAQIEKAILKSDLGLTPNSDGVVIRLNIPQLTQQRRIELVKVVHKKAEDSRIVIRNS 132
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA A +KL+K+K +SED+VK D+QKLTD+Y+K++D+I KEKE+++V
Sbjct: 133 RRDANDAIKKLEKDKAISEDDVKKAQDDMQKLTDKYVKEVDAIMNAKEKEIMEV 186
>gi|421074520|ref|ZP_15535551.1| Ribosome-recycling factor [Pelosinus fermentans JBW45]
gi|392527391|gb|EIW50486.1| Ribosome-recycling factor [Pelosinus fermentans JBW45]
Length = 186
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 130/174 (74%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++ ID +R +++R GR+ PA+LDKI V+YYG+P + +A I P+ + IQ ++
Sbjct: 13 KMKKAIDALRRELSTLRAGRATPALLDKITVDYYGTPTPINQVANIAVPEPRMITIQAWE 72
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS + IEKAI+ SDLG+TPN+DG VIRL +PQLT +RR EL KVV K+AE+ ++ +RN
Sbjct: 73 KSMIAQIEKAILKSDLGLTPNSDGVVIRLNIPQLTQQRRIELVKVVHKKAEDSRIVIRNS 132
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA A +KL+K+K +SED+VK D+QKLTD+Y+K++D+I KEKE+++V
Sbjct: 133 RRDANDAIKKLEKDKAISEDDVKKAQDDMQKLTDKYVKEVDTIMNAKEKEIMEV 186
>gi|399923806|ref|ZP_10781164.1| ribosome recycling factor [Peptoniphilus rhinitidis 1-13]
Length = 185
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/183 (48%), Positives = 137/183 (74%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S ++K+ ++RM++++ + + S+R GR+N ++LDKI V+YYG L +A ++ P+
Sbjct: 3 SDLKKNTESRMQKSVSSLSESLQSIRAGRANTSLLDKIFVDYYGQQTPLNQVASLSAPEP 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
L IQP+D + + IEKAI+ SDLG+TP+NDG+VIRL +PQLT ERRK+L+K+V K AE
Sbjct: 63 RLLAIQPWDANLIPDIEKAILKSDLGITPSNDGKVIRLVIPQLTEERRKDLTKLVGKDAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
E KV+VRNIRRDA++ +K +K K++SED+ D+QKLTD+Y+K+ID + + KEKEL
Sbjct: 123 EAKVSVRNIRRDAMEDIKKAEKAKEISEDDKVSFEEDIQKLTDKYIKEIDKVAESKEKEL 182
Query: 274 LKV 276
+++
Sbjct: 183 MEI 185
>gi|373857321|ref|ZP_09600063.1| ribosome recycling factor [Bacillus sp. 1NLA3E]
gi|372452971|gb|EHP26440.1| ribosome recycling factor [Bacillus sp. 1NLA3E]
Length = 185
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 90/178 (50%), Positives = 129/178 (72%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ K +M + I S+R GR+N ++LDK+ VEYYG+P + IA I+ P++ L+I
Sbjct: 8 NTKDKMSKAISAYTRELASIRAGRANASLLDKLTVEYYGAPTPVNQIAGISVPEARLLVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYDK+ L IEKAI+ SDLG+ P+NDG +IRL +PQLT ERRKEL KV+ + +EE KVA
Sbjct: 68 QPYDKTILGDIEKAILKSDLGLNPSNDGSIIRLAIPQLTEERRKELVKVIKRDSEEAKVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRNIRRDA + +KL+K ++ED ++ + ++QKLTD+++ KID I K KEKE+++V
Sbjct: 128 VRNIRRDANEDLKKLEKNGDITEDELRGYNDNIQKLTDDHISKIDGITKDKEKEIMEV 185
>gi|227824516|ref|ZP_03989348.1| ribosome recycling factor [Acidaminococcus sp. D21]
gi|352684981|ref|YP_004896966.1| ribosome recycling factor [Acidaminococcus intestini RyC-MR95]
gi|226905015|gb|EEH90933.1| ribosome recycling factor [Acidaminococcus sp. D21]
gi|350279636|gb|AEQ22826.1| ribosome recycling factor [Acidaminococcus intestini RyC-MR95]
Length = 187
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 94/194 (48%), Positives = 137/194 (70%), Gaps = 7/194 (3%)
Query: 83 CATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSL 142
ATIEE++A D + +M + + T ++RTGR+ P++LD+++V+YYG+ +
Sbjct: 1 MATIEELKA-------DSERKMTSALKALHTELAAIRTGRATPSLLDQVKVDYYGTATPV 53
Query: 143 KSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRK 202
+A ++ P+ ++IQP+DKS +K IEKAI++SDLG+ PNNDG VIRL+LP LT ERRK
Sbjct: 54 NQLANVSVPEPRMIVIQPWDKSLMKEIEKAIMTSDLGLNPNNDGTVIRLSLPILTEERRK 113
Query: 203 ELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKI 262
EL KVV K+ E +VAVRNIRR+ A +KL K K+++ED+ KD QKLTD+YMK+I
Sbjct: 114 ELVKVVHKKGESARVAVRNIRREYNDAVKKLLKGKEITEDDSKDAMDASQKLTDQYMKQI 173
Query: 263 DSIYKQKEKELLKV 276
D I +KEKE++ +
Sbjct: 174 DDILAKKEKEVMSI 187
>gi|357008012|ref|ZP_09073011.1| ribosome recycling factor [Paenibacillus elgii B69]
Length = 184
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 91/182 (50%), Positives = 131/182 (71%), Gaps = 1/182 (0%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
SI+K + RME+ I ++ + S+R GR+ PA+LD+++VEYYGS + +A INTPDS
Sbjct: 4 SIKKSAEERMEKAIAALKKDLASLRAGRATPALLDRVQVEYYGSMTPVNQLANINTPDSR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
+L+IQP+DKSS+ +IEKAI+ SDLG+TP+NDG IR+ +P LT ERR EL K+ K EE
Sbjct: 64 TLMIQPWDKSSVAAIEKAIMKSDLGLTPSNDGSAIRIVIPALTEERRSELVKMTRKYGEE 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
KVA+RNIRRDA +KL+K +SED + D+QK TD+++ ++D + KEKE++
Sbjct: 124 AKVAIRNIRRDANDDIKKLEK-TGISEDESRRHQDDIQKFTDKHIAEVDKVLAAKEKEIM 182
Query: 275 KV 276
+V
Sbjct: 183 EV 184
>gi|319649531|ref|ZP_08003687.1| ribosome recycling factor [Bacillus sp. 2_A_57_CT2]
gi|317398693|gb|EFV79375.1| ribosome recycling factor [Bacillus sp. 2_A_57_CT2]
Length = 185
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 88/178 (49%), Positives = 129/178 (72%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D K RM + I S+R G++N ++LD+I V+YYG+P + +A ++ P++ L+I
Sbjct: 8 DAKERMTKAISAYTRELASIRAGKANASLLDRITVDYYGAPTPVNQLAGVSAPEARLLVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
PYDKS L IEKAI+ SD+G+ P+NDG VIRL +PQLT ERRK+L KVV K++E+ KVA
Sbjct: 68 TPYDKSILGEIEKAILKSDIGLNPSNDGSVIRLAIPQLTEERRKDLVKVVKKESEDAKVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RN+RRDA +KL+K ++ED+++ S D+QKLTD+++ KID + K+KEKE+L V
Sbjct: 128 IRNVRRDANDDLKKLEKNGDITEDDLRGFSDDIQKLTDDHISKIDELTKEKEKEILAV 185
>gi|148238974|ref|YP_001224361.1| ribosome recycling factor [Synechococcus sp. WH 7803]
gi|166231523|sp|A5GJE9.1|RRF_SYNPW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|147847513|emb|CAK23064.1| Ribosome recycling factor [Synechococcus sp. WH 7803]
Length = 182
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 87/180 (48%), Positives = 132/180 (73%)
Query: 97 EKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSL 156
+ D+++ M ++++ + NFN++RTGR+N ++LD+I VEYYG+ LKS+A ++TPDS ++
Sbjct: 3 QSDLESSMRKSVEATQRNFNTIRTGRANSSLLDRISVEYYGAETPLKSLATLSTPDSQTI 62
Query: 157 LIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
IQP+D S+L IEKAI S+LG TPNNDG+VIR+ +P LT ERRKE K+ +K AEEGK
Sbjct: 63 QIQPFDISALALIEKAIAMSELGFTPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGK 122
Query: 217 VAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VA+RN+RRDA+ +K +KE + SED +D +QK D+++ +++ KE ++LKV
Sbjct: 123 VALRNLRRDAIDKIKKQEKEGEFSEDQSRDAQDSVQKTLDKFIAEVEQHLATKEADILKV 182
>gi|375085855|ref|ZP_09732477.1| ribosome recycling factor [Megamonas funiformis YIT 11815]
gi|374566340|gb|EHR37585.1| ribosome recycling factor [Megamonas funiformis YIT 11815]
Length = 185
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 90/174 (51%), Positives = 128/174 (73%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM++T+ ++ F S+R GR+ PA+LDK+ VEYYGS V + + I+ P+ +LIQP++
Sbjct: 12 RMKKTLSAAKSEFVSLRAGRATPALLDKVMVEYYGSLVPVNQVGNISVPEPRMILIQPWE 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K L IEKAI SDLG++PNNDG VIRL +PQLT ERR +L K + K+AEE KV+VRNI
Sbjct: 72 KPMLHEIEKAITRSDLGLSPNNDGTVIRLNIPQLTEERRTDLVKTLNKRAEESKVSVRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA +A +KL+K K ++ED+ K D+QK+ D+Y+K+ID +KEKE+++V
Sbjct: 132 RRDANEAIKKLEKAKSITEDDAKKAQEDIQKIVDKYIKEIDIARAEKEKEIMEV 185
>gi|296132870|ref|YP_003640117.1| ribosome recycling factor [Thermincola potens JR]
gi|296031448|gb|ADG82216.1| ribosome recycling factor [Thermincola potens JR]
Length = 185
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 131/174 (75%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM + ++ +R + ++RTGR+ PA+L+KI+V+YYG P + +A+++ P+ L+IQP+D
Sbjct: 12 RMRKAVEALRKDLATLRTGRATPALLEKIQVDYYGVPTPINQMAKVSAPEPRLLVIQPWD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS L IEKAI+ SDLG+TPNNDG VIRL +PQLT ERR EL K+ K+AE+G+VA+RNI
Sbjct: 72 KSVLGEIEKAIMKSDLGLTPNNDGTVIRLNIPQLTQERRAELVKICKKKAEDGRVAIRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA ++ +K +SED+ + ++QKLTD+Y+K++D + + KE+E+++V
Sbjct: 132 RRDANDQLKEFEKSGDISEDDNRRGQEEIQKLTDKYIKEVDQLLEHKEQEIMEV 185
>gi|33866285|ref|NP_897844.1| ribosome recycling factor [Synechococcus sp. WH 8102]
gi|39932068|sp|Q7U5F4.1|RRF_SYNPX RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|33639260|emb|CAE08268.1| ribosome recycling factor protein Rrf [Synechococcus sp. WH 8102]
Length = 182
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 87/179 (48%), Positives = 132/179 (73%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
+D++A M ++++ + NFN++RTGR+N ++LD+I VEYYG+ LKS+A ++TPDS ++
Sbjct: 4 QDLEASMRKSVEATQRNFNTIRTGRANSSLLDRISVEYYGAETPLKSLATLSTPDSQTIQ 63
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D S+L SIEKAI S+LG TPNNDG++IR+ +P LT ERRKE K+ +K AEEGKV
Sbjct: 64 IQPFDISALASIEKAIAMSELGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKV 123
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RN+RRDA+ +K +K+ SED +D +QK D+++ +++ KE ++LKV
Sbjct: 124 ALRNLRRDAIDKVKKQEKDGDFSEDQSRDEQDAVQKTLDKFIAELEKHLADKEADILKV 182
>gi|148241959|ref|YP_001227116.1| ribosome recycling factor [Synechococcus sp. RCC307]
gi|147850269|emb|CAK27763.1| Ribosome recycling factor [Synechococcus sp. RCC307]
Length = 179
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 88/178 (49%), Positives = 133/178 (74%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D++ M ++++ + NFN++RTGR+N ++LDK+ VEYYG+ LKS+A I+ PDS ++ I
Sbjct: 2 DLEDSMSKSLEATQRNFNTIRTGRANTSLLDKVMVEYYGADTPLKSLATISAPDSQTIQI 61
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D S+ IEKAI SDLG+TPNNDG++IR+ +P LT ERRKEL K+ +K AEEGKVA
Sbjct: 62 QPFDMGSMALIEKAIGMSDLGLTPNNDGKLIRINIPPLTEERRKELCKIASKYAEEGKVA 121
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RN+RRDA+ +K +K+ +LSED +D +QK+TD+++ ++ + KE ++LKV
Sbjct: 122 LRNVRRDAIDQIKKREKDGELSEDLSRDEQDKVQKVTDKFIADLEKLLADKEADILKV 179
>gi|78778906|ref|YP_397018.1| ribosome recycling factor [Prochlorococcus marinus str. MIT 9312]
gi|123554500|sp|Q31C13.1|RRF_PROM9 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|78712405|gb|ABB49582.1| ribosome recycling factor [Prochlorococcus marinus str. MIT 9312]
Length = 182
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 90/180 (50%), Positives = 138/180 (76%)
Query: 97 EKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSL 156
E++++ M ++I+ + NFN++RTGR+N ++LD+I VEYYG+ +KS+A I+T DS ++
Sbjct: 3 EQEIQENMNKSIEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLATISTVDSQTI 62
Query: 157 LIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
IQP+D S L++IEK+I SDLG+TPNNDG+VIR+ +P LT ERRKE K+ +K AEEGK
Sbjct: 63 SIQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGK 122
Query: 217 VAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VA+RNIRRDA+ +K +K+ +S D +D S++QK+T++++ I++ +KEKE+LKV
Sbjct: 123 VALRNIRRDAVDKEKKDEKDGLISIDESRDNQSEIQKITNKFIALIETKLSEKEKEILKV 182
>gi|24380004|ref|NP_721959.1| ribosome recycling factor [Streptococcus mutans UA159]
gi|290580017|ref|YP_003484409.1| ribosome recycling factor [Streptococcus mutans NN2025]
gi|387785688|ref|YP_006250784.1| ribosome recycling factor [Streptococcus mutans LJ23]
gi|397650224|ref|YP_006490751.1| ribosome recycling factor [Streptococcus mutans GS-5]
gi|449865320|ref|ZP_21778910.1| ribosome recycling factor [Streptococcus mutans U2B]
gi|449871758|ref|ZP_21781259.1| ribosome recycling factor [Streptococcus mutans 8ID3]
gi|449877293|ref|ZP_21783189.1| ribosome recycling factor [Streptococcus mutans S1B]
gi|449883270|ref|ZP_21785047.1| ribosome recycling factor [Streptococcus mutans SA38]
gi|449885627|ref|ZP_21785696.1| ribosome recycling factor [Streptococcus mutans SA41]
gi|449894266|ref|ZP_21789142.1| ribosome recycling factor [Streptococcus mutans SF12]
gi|449896759|ref|ZP_21789919.1| ribosome recycling factor [Streptococcus mutans R221]
gi|449902396|ref|ZP_21791545.1| ribosome recycling factor [Streptococcus mutans M230]
gi|449910024|ref|ZP_21794487.1| ribosome recycling factor [Streptococcus mutans OMZ175]
gi|449916549|ref|ZP_21796922.1| ribosome recycling factor [Streptococcus mutans 15JP3]
gi|449919886|ref|ZP_21798199.1| ribosome recycling factor [Streptococcus mutans 1SM1]
gi|449926831|ref|ZP_21800944.1| ribosome recycling factor [Streptococcus mutans 4SM1]
gi|449929266|ref|ZP_21801496.1| ribosome recycling factor [Streptococcus mutans 3SN1]
gi|449935831|ref|ZP_21803646.1| ribosome recycling factor [Streptococcus mutans 2ST1]
gi|449941860|ref|ZP_21805724.1| ribosome recycling factor [Streptococcus mutans 11A1]
gi|449951157|ref|ZP_21808538.1| ribosome recycling factor [Streptococcus mutans 11SSST2]
gi|449953339|ref|ZP_21808966.1| ribosome recycling factor [Streptococcus mutans 4VF1]
gi|449966404|ref|ZP_21812350.1| ribosome recycling factor [Streptococcus mutans 15VF2]
gi|449972131|ref|ZP_21814676.1| ribosome recycling factor [Streptococcus mutans 2VS1]
gi|449975755|ref|ZP_21815971.1| ribosome recycling factor [Streptococcus mutans 11VS1]
gi|449979692|ref|ZP_21816839.1| ribosome recycling factor [Streptococcus mutans 5SM3]
gi|449984565|ref|ZP_21819140.1| ribosome recycling factor [Streptococcus mutans NFSM2]
gi|449991701|ref|ZP_21822022.1| ribosome recycling factor [Streptococcus mutans NVAB]
gi|449994618|ref|ZP_21822611.1| ribosome recycling factor [Streptococcus mutans A9]
gi|450001521|ref|ZP_21825703.1| ribosome recycling factor [Streptococcus mutans N29]
gi|450005295|ref|ZP_21826596.1| ribosome recycling factor [Streptococcus mutans NMT4863]
gi|450010778|ref|ZP_21828786.1| ribosome recycling factor [Streptococcus mutans A19]
gi|450023892|ref|ZP_21830909.1| ribosome recycling factor [Streptococcus mutans U138]
gi|450030148|ref|ZP_21833090.1| ribosome recycling factor [Streptococcus mutans G123]
gi|450039287|ref|ZP_21836166.1| ribosome recycling factor [Streptococcus mutans T4]
gi|450050380|ref|ZP_21840248.1| ribosome recycling factor [Streptococcus mutans NFSM1]
gi|450056419|ref|ZP_21842036.1| ribosome recycling factor [Streptococcus mutans NLML4]
gi|450062947|ref|ZP_21844668.1| ribosome recycling factor [Streptococcus mutans NLML5]
gi|450067488|ref|ZP_21846675.1| ribosome recycling factor [Streptococcus mutans NLML9]
gi|450071117|ref|ZP_21847972.1| ribosome recycling factor [Streptococcus mutans M2A]
gi|450076171|ref|ZP_21849736.1| ribosome recycling factor [Streptococcus mutans N3209]
gi|450083566|ref|ZP_21852982.1| ribosome recycling factor [Streptococcus mutans N66]
gi|450086714|ref|ZP_21853847.1| ribosome recycling factor [Streptococcus mutans NV1996]
gi|450091426|ref|ZP_21855492.1| ribosome recycling factor [Streptococcus mutans W6]
gi|450097597|ref|ZP_21857551.1| ribosome recycling factor [Streptococcus mutans SF1]
gi|450105335|ref|ZP_21859847.1| ribosome recycling factor [Streptococcus mutans SF14]
gi|450114906|ref|ZP_21863597.1| ribosome recycling factor [Streptococcus mutans ST1]
gi|450119893|ref|ZP_21865352.1| ribosome recycling factor [Streptococcus mutans ST6]
gi|450127716|ref|ZP_21868692.1| ribosome recycling factor [Streptococcus mutans U2A]
gi|450132957|ref|ZP_21870402.1| ribosome recycling factor [Streptococcus mutans NLML8]
gi|450137478|ref|ZP_21871687.1| ribosome recycling factor [Streptococcus mutans NLML1]
gi|450144576|ref|ZP_21874097.1| ribosome recycling factor [Streptococcus mutans 1ID3]
gi|450150640|ref|ZP_21876675.1| ribosome recycling factor [Streptococcus mutans 14D]
gi|450154435|ref|ZP_21877723.1| ribosome recycling factor [Streptococcus mutans 21]
gi|450160530|ref|ZP_21880075.1| ribosome recycling factor [Streptococcus mutans 66-2A]
gi|450164792|ref|ZP_21881514.1| ribosome recycling factor [Streptococcus mutans B]
gi|450170118|ref|ZP_21883356.1| ribosome recycling factor [Streptococcus mutans SM4]
gi|450175201|ref|ZP_21885029.1| ribosome recycling factor [Streptococcus mutans SM1]
gi|450181972|ref|ZP_21888071.1| ribosome recycling factor [Streptococcus mutans 24]
gi|34924954|sp|Q8DSY2.1|RRF_STRMU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|24377992|gb|AAN59265.1|AE014993_9 putative ribosome recycling factor [Streptococcus mutans UA159]
gi|254996916|dbj|BAH87517.1| putative ribosome recycling factor [Streptococcus mutans NN2025]
gi|379132089|dbj|BAL68841.1| ribosome recycling factor [Streptococcus mutans LJ23]
gi|392603793|gb|AFM81957.1| ribosome recycling factor [Streptococcus mutans GS-5]
gi|449150419|gb|EMB54184.1| ribosome recycling factor [Streptococcus mutans 1ID3]
gi|449151638|gb|EMB55366.1| ribosome recycling factor [Streptococcus mutans 11A1]
gi|449152206|gb|EMB55918.1| ribosome recycling factor [Streptococcus mutans NLML8]
gi|449155096|gb|EMB58628.1| ribosome recycling factor [Streptococcus mutans 8ID3]
gi|449155147|gb|EMB58677.1| ribosome recycling factor [Streptococcus mutans 15JP3]
gi|449159077|gb|EMB62456.1| ribosome recycling factor [Streptococcus mutans 1SM1]
gi|449160226|gb|EMB63503.1| ribosome recycling factor [Streptococcus mutans 4SM1]
gi|449164733|gb|EMB67778.1| ribosome recycling factor [Streptococcus mutans 3SN1]
gi|449166181|gb|EMB69136.1| ribosome recycling factor [Streptococcus mutans 2ST1]
gi|449166514|gb|EMB69448.1| ribosome recycling factor [Streptococcus mutans 11SSST2]
gi|449170168|gb|EMB72900.1| ribosome recycling factor [Streptococcus mutans 15VF2]
gi|449171185|gb|EMB73860.1| ribosome recycling factor [Streptococcus mutans 2VS1]
gi|449172052|gb|EMB74693.1| ribosome recycling factor [Streptococcus mutans 4VF1]
gi|449176464|gb|EMB78810.1| ribosome recycling factor [Streptococcus mutans 11VS1]
gi|449177618|gb|EMB79910.1| ribosome recycling factor [Streptococcus mutans 5SM3]
gi|449180144|gb|EMB82320.1| ribosome recycling factor [Streptococcus mutans NFSM2]
gi|449180808|gb|EMB82946.1| ribosome recycling factor [Streptococcus mutans NVAB]
gi|449184486|gb|EMB86430.1| ribosome recycling factor [Streptococcus mutans N29]
gi|449185124|gb|EMB87026.1| ribosome recycling factor [Streptococcus mutans A9]
gi|449188713|gb|EMB90410.1| ribosome recycling factor [Streptococcus mutans NMT4863]
gi|449189977|gb|EMB91590.1| ribosome recycling factor [Streptococcus mutans A19]
gi|449192699|gb|EMB94107.1| ribosome recycling factor [Streptococcus mutans U138]
gi|449193277|gb|EMB94666.1| ribosome recycling factor [Streptococcus mutans G123]
gi|449200626|gb|EMC01650.1| ribosome recycling factor [Streptococcus mutans T4]
gi|449202733|gb|EMC03630.1| ribosome recycling factor [Streptococcus mutans NFSM1]
gi|449205214|gb|EMC05971.1| ribosome recycling factor [Streptococcus mutans NLML5]
gi|449206789|gb|EMC07482.1| ribosome recycling factor [Streptococcus mutans NLML4]
gi|449208047|gb|EMC08683.1| ribosome recycling factor [Streptococcus mutans NLML9]
gi|449212742|gb|EMC13094.1| ribosome recycling factor [Streptococcus mutans M2A]
gi|449212968|gb|EMC13316.1| ribosome recycling factor [Streptococcus mutans N3209]
gi|449212970|gb|EMC13317.1| ribosome recycling factor [Streptococcus mutans N66]
gi|449219155|gb|EMC19133.1| ribosome recycling factor [Streptococcus mutans NV1996]
gi|449219382|gb|EMC19351.1| ribosome recycling factor [Streptococcus mutans W6]
gi|449222561|gb|EMC22285.1| ribosome recycling factor [Streptococcus mutans SF1]
gi|449224936|gb|EMC24560.1| ribosome recycling factor [Streptococcus mutans SF14]
gi|449228587|gb|EMC27947.1| ribosome recycling factor [Streptococcus mutans ST1]
gi|449230336|gb|EMC29598.1| ribosome recycling factor [Streptococcus mutans U2A]
gi|449230891|gb|EMC30133.1| ribosome recycling factor [Streptococcus mutans ST6]
gi|449233269|gb|EMC32346.1| ribosome recycling factor [Streptococcus mutans 14D]
gi|449235259|gb|EMC34227.1| ribosome recycling factor [Streptococcus mutans NLML1]
gi|449237807|gb|EMC36611.1| ribosome recycling factor [Streptococcus mutans 21]
gi|449239905|gb|EMC38605.1| ribosome recycling factor [Streptococcus mutans 66-2A]
gi|449241332|gb|EMC39965.1| ribosome recycling factor [Streptococcus mutans B]
gi|449245414|gb|EMC43751.1| ribosome recycling factor [Streptococcus mutans 24]
gi|449246212|gb|EMC44523.1| ribosome recycling factor [Streptococcus mutans SM4]
gi|449247274|gb|EMC45559.1| ribosome recycling factor [Streptococcus mutans SM1]
gi|449250135|gb|EMC48214.1| ribosome recycling factor [Streptococcus mutans SA38]
gi|449251041|gb|EMC49072.1| ribosome recycling factor [Streptococcus mutans S1B]
gi|449255038|gb|EMC52917.1| ribosome recycling factor [Streptococcus mutans SA41]
gi|449255393|gb|EMC53248.1| ribosome recycling factor [Streptococcus mutans SF12]
gi|449260436|gb|EMC57936.1| ribosome recycling factor [Streptococcus mutans OMZ175]
gi|449261724|gb|EMC59190.1| ribosome recycling factor [Streptococcus mutans R221]
gi|449262794|gb|EMC60235.1| ribosome recycling factor [Streptococcus mutans M230]
gi|449264307|gb|EMC61652.1| ribosome recycling factor [Streptococcus mutans U2B]
Length = 185
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 94/183 (51%), Positives = 128/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K R E++ + F S+R GR+N ++LD+IEVEYYG P L +A I P++
Sbjct: 3 NAIVEKAKERFEQSHQSLAREFGSIRAGRANASLLDRIEVEYYGVPTPLNQLASITVPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+ P+DKSSLK IE AI +SD+G+ P NDG VIRL +P LT E RKEL+K V K E
Sbjct: 63 RVLLVSPFDKSSLKDIEHAINASDIGINPANDGSVIRLVIPALTEETRKELAKEVKKVGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
KVA+RNIRRDA+ +K +K K+++ED +K L D+QK+TDE +K IDS+ KEKEL
Sbjct: 123 NAKVAIRNIRRDAMDEAKKQEKIKEITEDELKSLEKDIQKVTDEAVKHIDSMTANKEKEL 182
Query: 274 LKV 276
L+V
Sbjct: 183 LEV 185
>gi|229545182|ref|ZP_04433907.1| ribosome recycling factor [Enterococcus faecalis TX1322]
gi|229309727|gb|EEN75714.1| ribosome recycling factor [Enterococcus faecalis TX1322]
Length = 185
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 88/176 (50%), Positives = 127/176 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +M + + +R +R GR+N ++LD+I+VEYYG+P + +A IN P++ L+I P
Sbjct: 10 KEKMTKAEESLRRELGQIRAGRANASLLDRIQVEYYGAPTPVNQLASINIPEARVLMITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
+DK+S+ IEKAI SD+G++P NDG VIRL +PQLT ERRKEL+K V K+AE KVAVR
Sbjct: 70 FDKNSIADIEKAIQMSDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKEAENSKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N+RRDA+ +K QK ++ED ++ D+QKLTD+ +K ID+I +KE+ELL+V
Sbjct: 130 NVRRDAMDELKKAQKNSDITEDELRSFEKDVQKLTDDSIKNIDAITAEKEQELLEV 185
>gi|295110296|emb|CBL24249.1| ribosome recycling factor [Ruminococcus obeum A2-162]
Length = 183
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 92/174 (52%), Positives = 128/174 (73%), Gaps = 1/174 (0%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +T++ ++R GR+NP +LDKI V+YYGSP L+ +A I P++ + IQP++
Sbjct: 11 KMTKTLNGFEEELTTIRAGRANPHILDKITVDYYGSPTPLQQVANITVPEARMIQIQPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
S +KSIEKAI++SDLG+ P+NDG++IRL LP+LT ERRKEL K V K+ E KVAVRNI
Sbjct: 71 SSLIKSIEKAILTSDLGLNPSNDGKLIRLVLPELTEERRKELVKDVKKKGEAAKVAVRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA A++KL K+ +SED +KDL +QKLTD+++KKID+ K KE+L V
Sbjct: 131 RRDANDAFKKLTKQ-DVSEDEIKDLEDSVQKLTDKFIKKIDAAVDTKAKEILTV 183
>gi|116872745|ref|YP_849526.1| ribosome recycling factor [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|123458442|sp|A0AIB5.1|RRF_LISW6 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|116741623|emb|CAK20747.1| ribosome recycling factor [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 185
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 90/176 (51%), Positives = 129/176 (73%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +M++ + ++R GR+N ++LD++ V+YYG+P + +A I+ P++ LLI P
Sbjct: 10 KEKMDKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAPTPVNQMASISVPEARMLLITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+ L IEKAI+ SDLG+TPNNDG V+RL++PQLT ERRKEL K V K+AEE KVAVR
Sbjct: 70 YDKTVLGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRR+A + +KL+K ++ED+++ D+QKLTDE +K ID+I K KE E+L+V
Sbjct: 130 NIRREANEELKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDNITKDKEAEILEV 185
>gi|450036172|ref|ZP_21835389.1| ribosome recycling factor [Streptococcus mutans M21]
gi|450111542|ref|ZP_21862769.1| ribosome recycling factor [Streptococcus mutans SM6]
gi|449194558|gb|EMB95912.1| ribosome recycling factor [Streptococcus mutans M21]
gi|449223789|gb|EMC23460.1| ribosome recycling factor [Streptococcus mutans SM6]
Length = 185
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 94/183 (51%), Positives = 128/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K R E++ + F S+R GR+N ++LD+IEVEYYG P L +A I P++
Sbjct: 3 NAIVEKAKERFEQSHQSLAREFGSIRAGRANASLLDRIEVEYYGVPTPLNQLASITVPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+ P+DKSSLK IE AI +SD+G+ P NDG VIRL +P LT E RKEL+K V K E
Sbjct: 63 RVLLVSPFDKSSLKDIEHAINASDIGINPANDGSVIRLVIPALTEETRKELAKEVKKVGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
KVA+RNIRRDA+ +K +K K+++ED +K L D+QK+TDE +K IDS+ KEKEL
Sbjct: 123 NAKVAIRNIRRDAMDEAKKQEKIKEITEDELKSLEKDIQKVTDEAVKHIDSMTTNKEKEL 182
Query: 274 LKV 276
L+V
Sbjct: 183 LEV 185
>gi|56419787|ref|YP_147105.1| ribosome recycling factor [Geobacillus kaustophilus HTA426]
gi|297530573|ref|YP_003671848.1| ribosome recycling factor [Geobacillus sp. C56-T3]
gi|319766267|ref|YP_004131768.1| ribosome recycling factor [Geobacillus sp. Y412MC52]
gi|375008224|ref|YP_004981857.1| ribosome-recycling factor [Geobacillus thermoleovorans CCB_US3_UF5]
gi|448237408|ref|YP_007401466.1| ribosome recycling factor [Geobacillus sp. GHH01]
gi|60390228|sp|Q5L0J9.1|RRF_GEOKA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|56379629|dbj|BAD75537.1| ribosome recycling factor [Geobacillus kaustophilus HTA426]
gi|297253825|gb|ADI27271.1| ribosome recycling factor [Geobacillus sp. C56-T3]
gi|317111133|gb|ADU93625.1| ribosome recycling factor [Geobacillus sp. Y412MC52]
gi|359287073|gb|AEV18757.1| Ribosome-recycling factor [Geobacillus thermoleovorans CCB_US3_UF5]
gi|445206250|gb|AGE21715.1| ribosome recycling factor [Geobacillus sp. GHH01]
Length = 185
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/176 (48%), Positives = 133/176 (75%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +M++ + S+R GR+N +L+K+ V+YYG P + +A I+ P++ L+IQP
Sbjct: 10 KEKMDKAVQAFTRELASIRAGRANAGLLEKVTVDYYGVPTPINQLASISVPEARLLVIQP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDKS++K +EKAI++SDLG+TP+NDG VIRL +P LT ERR+EL+K+V K +E+ KVAVR
Sbjct: 70 YDKSAIKEMEKAILASDLGLTPSNDGSVIRLVIPPLTEERRRELAKLVKKYSEDAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRRDA +KL+K +++ED ++ + ++QKLTD+++ KID+I K+KEKE+++V
Sbjct: 130 NIRRDANDELKKLEKNGEITEDELRSYTDEVQKLTDDHIAKIDAITKEKEKEVMEV 185
>gi|359462053|ref|ZP_09250616.1| ribosome recycling factor [Acaryochloris sp. CCMEE 5410]
Length = 182
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 88/173 (50%), Positives = 124/173 (71%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M+++I+ ++ + N++RTGR+N ++LD+I VEYYG+ L+S+A I+TPD+S++ IQP+D
Sbjct: 10 MQKSIEAMKRSLNTIRTGRANASLLDRITVEYYGTETPLRSLATISTPDASTITIQPFDP 69
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
SSL IE++I SD+G+ PNNDG IRL +P LT ERRK+ K+ K AEEGKVA+RNIR
Sbjct: 70 SSLTDIERSISLSDVGLVPNNDGSAIRLNIPPLTEERRKDFVKMAGKIAEEGKVAIRNIR 129
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RDA+ K K +SED KDL +Q LTD+Y +ID I +KE E+ V
Sbjct: 130 RDAIDTARKQGKSGDISEDESKDLQDKIQGLTDKYTGQIDKILAEKETEITTV 182
>gi|261419452|ref|YP_003253134.1| ribosome recycling factor [Geobacillus sp. Y412MC61]
gi|261375909|gb|ACX78652.1| ribosome recycling factor [Geobacillus sp. Y412MC61]
Length = 186
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/176 (48%), Positives = 133/176 (75%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +M++ + S+R GR+N +L+K+ V+YYG P + +A I+ P++ L+IQP
Sbjct: 11 KEKMDKAVQAFTRELASIRAGRANAGLLEKVTVDYYGVPTPINQLASISVPEARLLVIQP 70
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDKS++K +EKAI++SDLG+TP+NDG VIRL +P LT ERR+EL+K+V K +E+ KVAVR
Sbjct: 71 YDKSAIKEMEKAILASDLGLTPSNDGSVIRLVIPPLTEERRRELAKLVKKYSEDAKVAVR 130
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRRDA +KL+K +++ED ++ + ++QKLTD+++ KID+I K+KEKE+++V
Sbjct: 131 NIRRDANDELKKLEKNGEITEDELRSYTDEVQKLTDDHIAKIDAITKEKEKEVMEV 186
>gi|29376892|ref|NP_816046.1| ribosome recycling factor [Enterococcus faecalis V583]
gi|227519884|ref|ZP_03949933.1| ribosome recycling factor [Enterococcus faecalis TX0104]
gi|227553929|ref|ZP_03983976.1| ribosome recycling factor [Enterococcus faecalis HH22]
gi|229549430|ref|ZP_04438155.1| ribosome recycling factor [Enterococcus faecalis ATCC 29200]
gi|255972134|ref|ZP_05422720.1| ribosome recycling factor [Enterococcus faecalis T1]
gi|255975201|ref|ZP_05425787.1| ribosome recycling factor [Enterococcus faecalis T2]
gi|256617047|ref|ZP_05473893.1| ribosome recycling factor [Enterococcus faecalis ATCC 4200]
gi|256763091|ref|ZP_05503671.1| ribosome recycling factor [Enterococcus faecalis T3]
gi|256853758|ref|ZP_05559123.1| ribosome recycling factor [Enterococcus faecalis T8]
gi|256956675|ref|ZP_05560846.1| ribosome recycling factor [Enterococcus faecalis DS5]
gi|256961308|ref|ZP_05565479.1| ribosome recycling factor [Enterococcus faecalis Merz96]
gi|256963564|ref|ZP_05567735.1| ribosome recycling factor [Enterococcus faecalis HIP11704]
gi|257079630|ref|ZP_05573991.1| ribosome recycling factor [Enterococcus faecalis JH1]
gi|257087429|ref|ZP_05581790.1| ribosome recycling factor [Enterococcus faecalis D6]
gi|257090589|ref|ZP_05584950.1| ribosome recycling factor [Enterococcus faecalis CH188]
gi|257416636|ref|ZP_05593630.1| ribosome recycling factor [Enterococcus faecalis ARO1/DG]
gi|257419852|ref|ZP_05596846.1| ribosome recycling factor [Enterococcus faecalis T11]
gi|257421959|ref|ZP_05598949.1| ribosome recycling factor [Enterococcus faecalis X98]
gi|293383593|ref|ZP_06629503.1| ribosome recycling factor [Enterococcus faecalis R712]
gi|293387294|ref|ZP_06631851.1| ribosome recycling factor [Enterococcus faecalis S613]
gi|294780910|ref|ZP_06746264.1| ribosome recycling factor [Enterococcus faecalis PC1.1]
gi|300861008|ref|ZP_07107095.1| ribosome recycling factor [Enterococcus faecalis TUSoD Ef11]
gi|307270847|ref|ZP_07552134.1| ribosome recycling factor [Enterococcus faecalis TX4248]
gi|307271503|ref|ZP_07552775.1| ribosome recycling factor [Enterococcus faecalis TX0855]
gi|307277169|ref|ZP_07558273.1| ribosome recycling factor [Enterococcus faecalis TX2134]
gi|307285820|ref|ZP_07565954.1| ribosome recycling factor [Enterococcus faecalis TX0860]
gi|307290551|ref|ZP_07570463.1| ribosome recycling factor [Enterococcus faecalis TX0411]
gi|312899827|ref|ZP_07759146.1| ribosome recycling factor [Enterococcus faecalis TX0470]
gi|312905119|ref|ZP_07764240.1| ribosome recycling factor [Enterococcus faecalis TX0635]
gi|312906143|ref|ZP_07765155.1| ribosome recycling factor [Enterococcus faecalis DAPTO 512]
gi|312909488|ref|ZP_07768343.1| ribosome recycling factor [Enterococcus faecalis DAPTO 516]
gi|312953477|ref|ZP_07772317.1| ribosome recycling factor [Enterococcus faecalis TX0102]
gi|384513794|ref|YP_005708887.1| ribosome recycling factor [Enterococcus faecalis OG1RF]
gi|384519254|ref|YP_005706559.1| ribosome recycling factor [Enterococcus faecalis 62]
gi|397700587|ref|YP_006538375.1| ribosome recycling factor [Enterococcus faecalis D32]
gi|421513057|ref|ZP_15959845.1| Ribosome recycling factor [Enterococcus faecalis ATCC 29212]
gi|422685119|ref|ZP_16743344.1| ribosome recycling factor [Enterococcus faecalis TX4000]
gi|422687902|ref|ZP_16746073.1| ribosome recycling factor [Enterococcus faecalis TX0630]
gi|422693234|ref|ZP_16751248.1| ribosome recycling factor [Enterococcus faecalis TX0031]
gi|422695903|ref|ZP_16753881.1| ribosome recycling factor [Enterococcus faecalis TX4244]
gi|422697825|ref|ZP_16755756.1| ribosome recycling factor [Enterococcus faecalis TX1346]
gi|422701365|ref|ZP_16759206.1| ribosome recycling factor [Enterococcus faecalis TX1342]
gi|422706973|ref|ZP_16764670.1| ribosome recycling factor [Enterococcus faecalis TX0043]
gi|422709902|ref|ZP_16767248.1| ribosome recycling factor [Enterococcus faecalis TX0027]
gi|422714941|ref|ZP_16771665.1| ribosome recycling factor [Enterococcus faecalis TX0309A]
gi|422717381|ref|ZP_16774066.1| ribosome recycling factor [Enterococcus faecalis TX0309B]
gi|422719850|ref|ZP_16776473.1| ribosome recycling factor [Enterococcus faecalis TX0017]
gi|422724769|ref|ZP_16781245.1| ribosome recycling factor [Enterococcus faecalis TX2137]
gi|422725973|ref|ZP_16782430.1| ribosome recycling factor [Enterococcus faecalis TX0312]
gi|422729562|ref|ZP_16785963.1| ribosome recycling factor [Enterococcus faecalis TX0012]
gi|422732324|ref|ZP_16788664.1| ribosome recycling factor [Enterococcus faecalis TX0645]
gi|422736801|ref|ZP_16793063.1| ribosome recycling factor [Enterococcus faecalis TX1341]
gi|422869078|ref|ZP_16915600.1| ribosome recycling factor [Enterococcus faecalis TX1467]
gi|424675685|ref|ZP_18112582.1| ribosome recycling factor [Enterococcus faecalis 599]
gi|424676241|ref|ZP_18113118.1| ribosome recycling factor [Enterococcus faecalis ERV103]
gi|424680583|ref|ZP_18117386.1| ribosome recycling factor [Enterococcus faecalis ERV116]
gi|424683126|ref|ZP_18119880.1| ribosome recycling factor [Enterococcus faecalis ERV129]
gi|424686668|ref|ZP_18123334.1| ribosome recycling factor [Enterococcus faecalis ERV25]
gi|424689567|ref|ZP_18126138.1| ribosome recycling factor [Enterococcus faecalis ERV31]
gi|424694073|ref|ZP_18130482.1| ribosome recycling factor [Enterococcus faecalis ERV37]
gi|424697652|ref|ZP_18133974.1| ribosome recycling factor [Enterococcus faecalis ERV41]
gi|424700149|ref|ZP_18136347.1| ribosome recycling factor [Enterococcus faecalis ERV62]
gi|424703009|ref|ZP_18139146.1| ribosome recycling factor [Enterococcus faecalis ERV63]
gi|424710164|ref|ZP_18143630.1| ribosome recycling factor [Enterococcus faecalis ERV65]
gi|424717877|ref|ZP_18147151.1| ribosome recycling factor [Enterococcus faecalis ERV68]
gi|424721101|ref|ZP_18150199.1| ribosome recycling factor [Enterococcus faecalis ERV72]
gi|424725042|ref|ZP_18153969.1| ribosome recycling factor [Enterococcus faecalis ERV73]
gi|424727278|ref|ZP_18155911.1| ribosome recycling factor [Enterococcus faecalis ERV81]
gi|424742066|ref|ZP_18170400.1| ribosome recycling factor [Enterococcus faecalis ERV85]
gi|424751198|ref|ZP_18179230.1| ribosome recycling factor [Enterococcus faecalis ERV93]
gi|428767605|ref|YP_007153716.1| ribosome-recycling factor [Enterococcus faecalis str. Symbioflor 1]
gi|430359653|ref|ZP_19425905.1| ribosome recycling factor [Enterococcus faecalis OG1X]
gi|430370074|ref|ZP_19428873.1| ribosome recycling factor [Enterococcus faecalis M7]
gi|34924912|sp|Q831V2.1|RRF_ENTFA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|29344357|gb|AAO82116.1| ribosome recycling factor [Enterococcus faecalis V583]
gi|227072678|gb|EEI10641.1| ribosome recycling factor [Enterococcus faecalis TX0104]
gi|227176915|gb|EEI57887.1| ribosome recycling factor [Enterococcus faecalis HH22]
gi|229305667|gb|EEN71663.1| ribosome recycling factor [Enterococcus faecalis ATCC 29200]
gi|255963152|gb|EET95628.1| ribosome recycling factor [Enterococcus faecalis T1]
gi|255968073|gb|EET98695.1| ribosome recycling factor [Enterococcus faecalis T2]
gi|256596574|gb|EEU15750.1| ribosome recycling factor [Enterococcus faecalis ATCC 4200]
gi|256684342|gb|EEU24037.1| ribosome recycling factor [Enterococcus faecalis T3]
gi|256710701|gb|EEU25744.1| ribosome recycling factor [Enterococcus faecalis T8]
gi|256947171|gb|EEU63803.1| ribosome recycling factor [Enterococcus faecalis DS5]
gi|256951804|gb|EEU68436.1| ribosome recycling factor [Enterococcus faecalis Merz96]
gi|256954060|gb|EEU70692.1| ribosome recycling factor [Enterococcus faecalis HIP11704]
gi|256987660|gb|EEU74962.1| ribosome recycling factor [Enterococcus faecalis JH1]
gi|256995459|gb|EEU82761.1| ribosome recycling factor [Enterococcus faecalis D6]
gi|256999401|gb|EEU85921.1| ribosome recycling factor [Enterococcus faecalis CH188]
gi|257158464|gb|EEU88424.1| ribosome recycling factor [Enterococcus faecalis ARO1/DG]
gi|257161680|gb|EEU91640.1| ribosome recycling factor [Enterococcus faecalis T11]
gi|257163783|gb|EEU93743.1| ribosome recycling factor [Enterococcus faecalis X98]
gi|291079105|gb|EFE16469.1| ribosome recycling factor [Enterococcus faecalis R712]
gi|291083331|gb|EFE20294.1| ribosome recycling factor [Enterococcus faecalis S613]
gi|294452036|gb|EFG20484.1| ribosome recycling factor [Enterococcus faecalis PC1.1]
gi|295113452|emb|CBL32089.1| ribosome recycling factor [Enterococcus sp. 7L76]
gi|300850047|gb|EFK77797.1| ribosome recycling factor [Enterococcus faecalis TUSoD Ef11]
gi|306498406|gb|EFM67911.1| ribosome recycling factor [Enterococcus faecalis TX0411]
gi|306502581|gb|EFM71848.1| ribosome recycling factor [Enterococcus faecalis TX0860]
gi|306506099|gb|EFM75265.1| ribosome recycling factor [Enterococcus faecalis TX2134]
gi|306511775|gb|EFM80773.1| ribosome recycling factor [Enterococcus faecalis TX0855]
gi|306512760|gb|EFM81405.1| ribosome recycling factor [Enterococcus faecalis TX4248]
gi|310627789|gb|EFQ11072.1| ribosome recycling factor [Enterococcus faecalis DAPTO 512]
gi|310628686|gb|EFQ11969.1| ribosome recycling factor [Enterococcus faecalis TX0102]
gi|310631509|gb|EFQ14792.1| ribosome recycling factor [Enterococcus faecalis TX0635]
gi|311290161|gb|EFQ68717.1| ribosome recycling factor [Enterococcus faecalis DAPTO 516]
gi|311293077|gb|EFQ71633.1| ribosome recycling factor [Enterococcus faecalis TX0470]
gi|315025416|gb|EFT37348.1| ribosome recycling factor [Enterococcus faecalis TX2137]
gi|315030225|gb|EFT42157.1| ribosome recycling factor [Enterococcus faecalis TX4000]
gi|315032889|gb|EFT44821.1| ribosome recycling factor [Enterococcus faecalis TX0017]
gi|315035626|gb|EFT47558.1| ribosome recycling factor [Enterococcus faecalis TX0027]
gi|315146673|gb|EFT90689.1| ribosome recycling factor [Enterococcus faecalis TX4244]
gi|315150163|gb|EFT94179.1| ribosome recycling factor [Enterococcus faecalis TX0012]
gi|315152144|gb|EFT96160.1| ribosome recycling factor [Enterococcus faecalis TX0031]
gi|315155331|gb|EFT99347.1| ribosome recycling factor [Enterococcus faecalis TX0043]
gi|315159093|gb|EFU03110.1| ribosome recycling factor [Enterococcus faecalis TX0312]
gi|315161686|gb|EFU05703.1| ribosome recycling factor [Enterococcus faecalis TX0645]
gi|315166409|gb|EFU10426.1| ribosome recycling factor [Enterococcus faecalis TX1341]
gi|315170306|gb|EFU14323.1| ribosome recycling factor [Enterococcus faecalis TX1342]
gi|315173660|gb|EFU17677.1| ribosome recycling factor [Enterococcus faecalis TX1346]
gi|315574370|gb|EFU86561.1| ribosome recycling factor [Enterococcus faecalis TX0309B]
gi|315579052|gb|EFU91243.1| ribosome recycling factor [Enterococcus faecalis TX0630]
gi|315580155|gb|EFU92346.1| ribosome recycling factor [Enterococcus faecalis TX0309A]
gi|323481387|gb|ADX80826.1| ribosome recycling factor [Enterococcus faecalis 62]
gi|327535683|gb|AEA94517.1| ribosome recycling factor [Enterococcus faecalis OG1RF]
gi|329572247|gb|EGG53907.1| ribosome recycling factor [Enterococcus faecalis TX1467]
gi|397337226|gb|AFO44898.1| ribosome recycling factor [Enterococcus faecalis D32]
gi|401673886|gb|EJS80256.1| Ribosome recycling factor [Enterococcus faecalis ATCC 29212]
gi|402350321|gb|EJU85225.1| ribosome recycling factor [Enterococcus faecalis 599]
gi|402353881|gb|EJU88703.1| ribosome recycling factor [Enterococcus faecalis ERV116]
gi|402357500|gb|EJU92207.1| ribosome recycling factor [Enterococcus faecalis ERV103]
gi|402365892|gb|EJV00306.1| ribosome recycling factor [Enterococcus faecalis ERV129]
gi|402367063|gb|EJV01414.1| ribosome recycling factor [Enterococcus faecalis ERV25]
gi|402367652|gb|EJV01991.1| ribosome recycling factor [Enterococcus faecalis ERV31]
gi|402371855|gb|EJV05999.1| ribosome recycling factor [Enterococcus faecalis ERV37]
gi|402374525|gb|EJV08541.1| ribosome recycling factor [Enterococcus faecalis ERV62]
gi|402375183|gb|EJV09175.1| ribosome recycling factor [Enterococcus faecalis ERV41]
gi|402383617|gb|EJV17212.1| ribosome recycling factor [Enterococcus faecalis ERV68]
gi|402383876|gb|EJV17455.1| ribosome recycling factor [Enterococcus faecalis ERV65]
gi|402385664|gb|EJV19196.1| ribosome recycling factor [Enterococcus faecalis ERV63]
gi|402392297|gb|EJV25561.1| ribosome recycling factor [Enterococcus faecalis ERV72]
gi|402392435|gb|EJV25696.1| ribosome recycling factor [Enterococcus faecalis ERV73]
gi|402397268|gb|EJV30296.1| ribosome recycling factor [Enterococcus faecalis ERV81]
gi|402401054|gb|EJV33854.1| ribosome recycling factor [Enterococcus faecalis ERV85]
gi|402405752|gb|EJV38336.1| ribosome recycling factor [Enterococcus faecalis ERV93]
gi|427185778|emb|CCO73002.1| ribosome-recycling factor [Enterococcus faecalis str. Symbioflor 1]
gi|429513277|gb|ELA02864.1| ribosome recycling factor [Enterococcus faecalis OG1X]
gi|429515623|gb|ELA05134.1| ribosome recycling factor [Enterococcus faecalis M7]
Length = 185
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 88/176 (50%), Positives = 127/176 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +M + + +R +R GR+N ++LD+I+VEYYG+P + +A IN P++ L+I P
Sbjct: 10 KEKMTKAEESLRRELGQIRAGRANASLLDRIQVEYYGAPTPVNQLASINIPEARVLMITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
+DK+S+ IEKAI SD+G++P NDG VIRL +PQLT ERRKEL+K V K+AE KVAVR
Sbjct: 70 FDKNSIADIEKAIQMSDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKEAENSKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N+RRDA+ +K QK ++ED ++ D+QKLTD+ +K ID+I +KE+ELL+V
Sbjct: 130 NVRRDAMDELKKAQKNGDITEDELRSFEKDVQKLTDDSIKNIDAITAEKEQELLEV 185
>gi|257082024|ref|ZP_05576385.1| ribosome recycling factor [Enterococcus faecalis E1Sol]
gi|256990054|gb|EEU77356.1| ribosome recycling factor [Enterococcus faecalis E1Sol]
Length = 185
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 88/176 (50%), Positives = 127/176 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +M + + +R +R GR+N ++LD+I+VEYYG+P + +A IN P++ L+I P
Sbjct: 10 KEKMTKAEEGLRRELGQIRAGRANASLLDRIQVEYYGAPTPVNQLASINIPEARVLMITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
+DK+S+ IEKAI SD+G++P NDG VIRL +PQLT ERRKEL+K V K+AE KVAVR
Sbjct: 70 FDKNSIADIEKAIQMSDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKEAENSKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N+RRDA+ +K QK ++ED ++ D+QKLTD+ +K ID+I +KE+ELL+V
Sbjct: 130 NVRRDAMDELKKAQKNGDITEDELRSFEKDVQKLTDDSIKNIDAITAEKEQELLEV 185
>gi|405983848|ref|ZP_11042153.1| ribosome recycling factor [Slackia piriformis YIT 12062]
gi|404388663|gb|EJZ83745.1| ribosome recycling factor [Slackia piriformis YIT 12062]
Length = 185
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/176 (48%), Positives = 128/176 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
+A ME+ ++ ++ F SVRTGR+NP MLDKI+V+YYG P + +A + TPD+ L+I+P
Sbjct: 10 EASMEKALENLKEAFVSVRTGRANPMMLDKIKVDYYGVPTPINQMAAVKTPDAHMLIIEP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
+DKS L+ IE AI++SDLG+TP+NDG +IRL P LT ERRKE+ K AEEG+VAVR
Sbjct: 70 WDKSCLRGIEAAILASDLGITPSNDGSMIRLPFPALTEERRKEMVKQCKAYAEEGRVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N RRD E+L+K+ ++SED+ + +QKLTD+++ +D + K+KE E++++
Sbjct: 130 NARRDGNAKIERLKKDSEISEDDARRAEEQIQKLTDKFIGTVDEMLKKKEAEVMEI 185
>gi|406982722|gb|EKE04005.1| hypothetical protein ACD_20C00120G0006 [uncultured bacterium]
Length = 186
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 127/174 (72%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++TI + F+ +RTGR+NP +LDKI +YYG+P L+ I+ I+ D +L+IQPYD
Sbjct: 13 KMQKTIAETKREFSGIRTGRANPMILDKINADYYGTPTPLRQISNISVQDGQTLVIQPYD 72
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS++ +IEKAI+ SDLG+ PNNDG+ +R+T P LT +RRK+L K V K E+ KVA+RNI
Sbjct: 73 KSAISAIEKAILKSDLGVNPNNDGQNVRITFPPLTEDRRKDLVKQVKKIGEDNKVAIRNI 132
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD + +KL+K + L ED VK +QK+TD+Y ++ID++ +KEKE+L V
Sbjct: 133 RRDMTDSLKKLEKSESLPEDEVKKHQEQIQKMTDKYTREIDTVVAEKEKEVLAV 186
>gi|297617174|ref|YP_003702333.1| ribosome recycling factor [Syntrophothermus lipocalidus DSM 12680]
gi|297145011|gb|ADI01768.1| ribosome recycling factor [Syntrophothermus lipocalidus DSM 12680]
Length = 188
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 92/185 (49%), Positives = 131/185 (70%)
Query: 92 EKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTP 151
E I KDV++RM++T++ + + S+R GR+NPAMLDKI VEYYG P + + I P
Sbjct: 4 EVKEIVKDVESRMKKTVEHLVKDLASLRAGRANPAMLDKITVEYYGQPTPINQLGNIGVP 63
Query: 152 DSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 211
+ L+IQP+DK+++ IEKAI+ SDLG+ P NDG VIR+ +P LT ERRKE+ K+V K+
Sbjct: 64 EPRMLVIQPWDKTAIPEIEKAILKSDLGVNPTNDGNVIRIAIPPLTEERRKEMVKMVRKR 123
Query: 212 AEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEK 271
AEE KVAVRN+RR+A + +KEK +SED K ++QKLTD +K ID + + KEK
Sbjct: 124 AEEAKVAVRNLRREANDEIKLAEKEKLISEDEAKKRLDEIQKLTDNTIKDIDKVLQTKEK 183
Query: 272 ELLKV 276
++++V
Sbjct: 184 DIMEV 188
>gi|392989246|ref|YP_006487839.1| ribosome recycling factor [Enterococcus hirae ATCC 9790]
gi|392336666|gb|AFM70948.1| ribosome recycling factor [Enterococcus hirae ATCC 9790]
Length = 185
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 88/183 (48%), Positives = 130/183 (71%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+I + K +M++ ++ +R GR+N ++LD+I V YYG+P L +A I P++
Sbjct: 3 DAIMTEAKEKMQKAAQNLQRELGQIRAGRANASLLDRITVNYYGAPTPLNQMASIQIPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
L+I P+DKS L+ +EKAI++SD+G++P NDG VIRL +PQLT ERRKEL+K V K+AE
Sbjct: 63 RVLMITPFDKSILQDVEKAIMASDIGISPTNDGNVIRLIIPQLTEERRKELAKDVKKEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
K+AVRNIRRDA+ Y+K QK ++ED+++ L ++QKLTDE +K++D I KE+EL
Sbjct: 123 NAKIAVRNIRRDAIDEYKKQQKNGDITEDDLRGLEKEVQKLTDESIKEVDKIASDKEQEL 182
Query: 274 LKV 276
L V
Sbjct: 183 LDV 185
>gi|257084575|ref|ZP_05578936.1| ribosome recycling factor [Enterococcus faecalis Fly1]
gi|307287723|ref|ZP_07567766.1| ribosome recycling factor [Enterococcus faecalis TX0109]
gi|422703701|ref|ZP_16761521.1| ribosome recycling factor [Enterococcus faecalis TX1302]
gi|256992605|gb|EEU79907.1| ribosome recycling factor [Enterococcus faecalis Fly1]
gi|306501461|gb|EFM70764.1| ribosome recycling factor [Enterococcus faecalis TX0109]
gi|315164822|gb|EFU08839.1| ribosome recycling factor [Enterococcus faecalis TX1302]
Length = 185
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 87/176 (49%), Positives = 127/176 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +M + + +R +R GR+N ++LD+I+VEYYG+P + +A IN P++ L+I P
Sbjct: 10 KEKMTKAEESLRRELGQIRAGRANASLLDRIQVEYYGAPTPVNQLASINIPEARVLMITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
+DK+S+ IEKAI SD+G++P NDG VIRL +PQLT ERRKEL+K V K+AE K+AVR
Sbjct: 70 FDKNSIADIEKAIQMSDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKEAENSKIAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N+RRDA+ +K QK ++ED ++ D+QKLTD+ +K ID+I +KE+ELL+V
Sbjct: 130 NVRRDAMDELKKAQKNGDITEDELRSFEKDVQKLTDDSIKNIDAITAEKEQELLEV 185
>gi|78185216|ref|YP_377651.1| ribosome recycling factor [Synechococcus sp. CC9902]
gi|123580806|sp|Q3AV97.1|RRF_SYNS9 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|78169510|gb|ABB26607.1| ribosome recycling factor [Synechococcus sp. CC9902]
Length = 182
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 88/179 (49%), Positives = 131/179 (73%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
KD++A M ++++ + NFN++RTGR+N ++LD+I VEYYG+ LKS+A ++TPDS ++
Sbjct: 4 KDLEASMRKSLEATQRNFNTIRTGRANSSLLDRISVEYYGADTPLKSLATLSTPDSQTIQ 63
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D S L +IEKAI S+LG TPNNDG+VIR+ +P LT ERRKE K+ +K AEEGKV
Sbjct: 64 IQPFDISGLAAIEKAIAMSELGFTPNNDGKVIRINVPPLTEERRKEFCKMASKYAEEGKV 123
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RN+RRDA+ +K +K+ SED +D +QK+ D+++ +++ KE +LKV
Sbjct: 124 ALRNLRRDAIDKVKKQEKDGDFSEDQSRDEQDSVQKVLDKFIVELEKQLADKEAAILKV 182
>gi|424760598|ref|ZP_18188210.1| ribosome recycling factor [Enterococcus faecalis R508]
gi|402403291|gb|EJV35970.1| ribosome recycling factor [Enterococcus faecalis R508]
Length = 185
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 87/176 (49%), Positives = 127/176 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +M + + +R +R GR+N ++LD+I+VEYYG+P + +A IN P++ L+I P
Sbjct: 10 KEKMTKAEESLRRELGQIRAGRANASLLDRIQVEYYGAPTPVNQLASINIPEARVLMITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
+DK+S+ IEKAI SD+G++P NDG V+RL +PQLT ERRKEL+K V K+AE KVAVR
Sbjct: 70 FDKNSIADIEKAIQMSDIGISPTNDGNVVRLVIPQLTEERRKELAKDVKKEAENSKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N+RRDA+ +K QK ++ED ++ D+QKLTD+ +K ID+I +KE+ELL+V
Sbjct: 130 NVRRDAMDELKKAQKNGDITEDELRSFEKDVQKLTDDSIKNIDAITAEKEQELLEV 185
>gi|126695885|ref|YP_001090771.1| ribosome recycling factor [Prochlorococcus marinus str. MIT 9301]
gi|126542928|gb|ABO17170.1| Ribosome recycling factor [Prochlorococcus marinus str. MIT 9301]
Length = 173
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 90/173 (52%), Positives = 133/173 (76%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M ++I+ + NFN++RTGR+N ++LD++ VEYYG+ +KS+A I+T DS ++ IQP+D
Sbjct: 1 MNKSIEATQRNFNTIRTGRANASLLDRVSVEYYGAETPIKSLATISTVDSQTISIQPFDI 60
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
S L++IEK+I SDLG+TPNNDG+VIR+ +P LT ERRKE K+ +K AEEGKVA+RNIR
Sbjct: 61 SCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIR 120
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RDA+ +K +K+ +S D +D S++QK+TD+Y+ I++ +KEKE+LKV
Sbjct: 121 RDAVDKEKKDEKDGLISIDESRDNQSEIQKITDKYIALIETKLSEKEKEILKV 173
>gi|217964539|ref|YP_002350217.1| ribosome recycling factor [Listeria monocytogenes HCC23]
gi|290893573|ref|ZP_06556556.1| ribosome recycling factor [Listeria monocytogenes FSL J2-071]
gi|315282161|ref|ZP_07870629.1| ribosome recycling factor [Listeria marthii FSL S4-120]
gi|386008085|ref|YP_005926363.1| frr [Listeria monocytogenes L99]
gi|386026686|ref|YP_005947462.1| putative ribosome recycling factor [Listeria monocytogenes M7]
gi|404407751|ref|YP_006690466.1| ribosome recycling factor [Listeria monocytogenes SLCC2376]
gi|422409527|ref|ZP_16486488.1| ribosome recycling factor [Listeria monocytogenes FSL F2-208]
gi|422809394|ref|ZP_16857805.1| Ribosome recycling factor [Listeria monocytogenes FSL J1-208]
gi|254809517|sp|B8DG13.1|RRF_LISMH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|217333809|gb|ACK39603.1| ribosome recycling factor [Listeria monocytogenes HCC23]
gi|290556918|gb|EFD90449.1| ribosome recycling factor [Listeria monocytogenes FSL J2-071]
gi|307570895|emb|CAR84074.1| frr [Listeria monocytogenes L99]
gi|313608995|gb|EFR84735.1| ribosome recycling factor [Listeria monocytogenes FSL F2-208]
gi|313614193|gb|EFR87869.1| ribosome recycling factor [Listeria marthii FSL S4-120]
gi|336023267|gb|AEH92404.1| putative ribosome recycling factor [Listeria monocytogenes M7]
gi|378753008|gb|EHY63593.1| Ribosome recycling factor [Listeria monocytogenes FSL J1-208]
gi|404241900|emb|CBY63300.1| ribosome recycling factor [Listeria monocytogenes SLCC2376]
Length = 185
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 128/176 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +ME+ + ++R GR+N ++LD++ V+YYG+ + +A I+ P++ LLI P
Sbjct: 10 KEKMEKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAATPVNQMASISVPEARMLLITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+ L IEKAI+ SDLG+TPNNDG V+RL++PQLT ERRKEL K V K+AEE KVAVR
Sbjct: 70 YDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRR+A + +KL+K ++ED+++ D+QKLTDE +K IDSI K KE E+L+V
Sbjct: 130 NIRREANEELKKLEKSGDITEDDLRSYGEDVQKLTDESIKNIDSITKDKEAEILEV 185
>gi|384159365|ref|YP_005541438.1| ribosome recycling factor [Bacillus amyloliquefaciens TA208]
gi|384168411|ref|YP_005549789.1| ribosome recycling factor [Bacillus amyloliquefaciens XH7]
gi|328553453|gb|AEB23945.1| ribosome recycling factor [Bacillus amyloliquefaciens TA208]
gi|341827690|gb|AEK88941.1| ribosome recycling factor [Bacillus amyloliquefaciens XH7]
Length = 185
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 89/176 (50%), Positives = 127/176 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K RME+ + SVR GR+NP++LDK+ VEYYG+ L ++ IN ++ L++ P
Sbjct: 10 KERMEKAVAAYSRELASVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVSEARMLVVTP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+++ IEKAI+ +DLG+TP +DG +IR+ +P LT ERRKEL KVV K AEE KVAVR
Sbjct: 70 YDKTAIGDIEKAILKADLGVTPTSDGTIIRIAIPALTEERRKELVKVVKKYAEEAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N+RRD+ +KL+K ++ED ++ S D+QKLTDE++ KIDS+ K KEKE+++V
Sbjct: 130 NVRRDSNDELKKLEKNGDITEDELRASSEDVQKLTDEFVSKIDSVTKDKEKEIMEV 185
>gi|16803354|ref|NP_464839.1| ribosome recycling factor [Listeria monocytogenes EGD-e]
gi|46907540|ref|YP_013929.1| ribosome recycling factor [Listeria monocytogenes serotype 4b str.
F2365]
gi|47094294|ref|ZP_00231999.1| ribosome recycling factor [Listeria monocytogenes str. 4b H7858]
gi|47096939|ref|ZP_00234516.1| ribosome recycling factor [Listeria monocytogenes str. 1/2a F6854]
gi|226223915|ref|YP_002758022.1| ribosome recycling factor [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|254824627|ref|ZP_05229628.1| ribosome recycling factor [Listeria monocytogenes FSL J1-194]
gi|254828675|ref|ZP_05233362.1| ribosome recycling factor [Listeria monocytogenes FSL N3-165]
gi|254852635|ref|ZP_05241983.1| ribosome recycling factor [Listeria monocytogenes FSL R2-503]
gi|254911988|ref|ZP_05262000.1| ribosome recycling factor [Listeria monocytogenes J2818]
gi|254932371|ref|ZP_05265730.1| ribosome recycling factor [Listeria monocytogenes HPB2262]
gi|254936315|ref|ZP_05268012.1| ribosome recycling factor [Listeria monocytogenes F6900]
gi|254992874|ref|ZP_05275064.1| ribosome recycling factor [Listeria monocytogenes FSL J2-064]
gi|255026995|ref|ZP_05298981.1| ribosome recycling factor [Listeria monocytogenes FSL J2-003]
gi|255522289|ref|ZP_05389526.1| ribosome recycling factor [Listeria monocytogenes FSL J1-175]
gi|284801699|ref|YP_003413564.1| hypothetical protein LM5578_1453 [Listeria monocytogenes 08-5578]
gi|284994841|ref|YP_003416609.1| hypothetical protein LM5923_1406 [Listeria monocytogenes 08-5923]
gi|300765446|ref|ZP_07075428.1| ribosome recycling factor [Listeria monocytogenes FSL N1-017]
gi|386043625|ref|YP_005962430.1| ribosome recycling factor [Listeria monocytogenes 10403S]
gi|386046966|ref|YP_005965298.1| ribosome recycling factor [Listeria monocytogenes J0161]
gi|386050290|ref|YP_005968281.1| ribosome recycling factor [Listeria monocytogenes FSL R2-561]
gi|386053567|ref|YP_005971125.1| ribosome recycling factor [Listeria monocytogenes Finland 1998]
gi|386732052|ref|YP_006205548.1| ribosome recycling factor [Listeria monocytogenes 07PF0776]
gi|404280868|ref|YP_006681766.1| ribosome recycling factor [Listeria monocytogenes SLCC2755]
gi|404283805|ref|YP_006684702.1| ribosome recycling factor [Listeria monocytogenes SLCC2372]
gi|404286732|ref|YP_006693318.1| ribosome recycling factor [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|404410612|ref|YP_006696200.1| ribosome recycling factor [Listeria monocytogenes SLCC5850]
gi|404413390|ref|YP_006698977.1| ribosome recycling factor [Listeria monocytogenes SLCC7179]
gi|405749656|ref|YP_006673122.1| ribosome recycling factor [Listeria monocytogenes ATCC 19117]
gi|405752531|ref|YP_006675996.1| ribosome recycling factor [Listeria monocytogenes SLCC2378]
gi|405755443|ref|YP_006678907.1| ribosome recycling factor [Listeria monocytogenes SLCC2540]
gi|405758361|ref|YP_006687637.1| ribosome recycling factor [Listeria monocytogenes SLCC2479]
gi|406704085|ref|YP_006754439.1| ribosome recycling factor [Listeria monocytogenes L312]
gi|417313769|ref|ZP_12100476.1| ribosome recycling factor [Listeria monocytogenes J1816]
gi|417317467|ref|ZP_12104084.1| ribosome recycling factor [Listeria monocytogenes J1-220]
gi|424714188|ref|YP_007014903.1| Ribosome-recycling factor [Listeria monocytogenes serotype 4b str.
LL195]
gi|424823077|ref|ZP_18248090.1| Ribosome-recycling factor [Listeria monocytogenes str. Scott A]
gi|22001941|sp|Q8Y7G7.1|RRF_LISMO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|60390258|sp|Q720A8.1|RRF_LISMF RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|259494548|sp|C1L2M0.1|RRF_LISMC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|16410730|emb|CAC99392.1| frr [Listeria monocytogenes EGD-e]
gi|46880808|gb|AAT04106.1| ribosome recycling factor [Listeria monocytogenes serotype 4b str.
F2365]
gi|47014699|gb|EAL05655.1| ribosome recycling factor [Listeria monocytogenes str. 1/2a F6854]
gi|47017338|gb|EAL08166.1| ribosome recycling factor [Listeria monocytogenes str. 4b H7858]
gi|225876377|emb|CAS05086.1| Putative ribosome recycling factor [Listeria monocytogenes serotype
4b str. CLIP 80459]
gi|258601078|gb|EEW14403.1| ribosome recycling factor [Listeria monocytogenes FSL N3-165]
gi|258605951|gb|EEW18559.1| ribosome recycling factor [Listeria monocytogenes FSL R2-503]
gi|258608905|gb|EEW21513.1| ribosome recycling factor [Listeria monocytogenes F6900]
gi|284057261|gb|ADB68202.1| hypothetical protein LM5578_1453 [Listeria monocytogenes 08-5578]
gi|284060308|gb|ADB71247.1| hypothetical protein LM5923_1406 [Listeria monocytogenes 08-5923]
gi|293583927|gb|EFF95959.1| ribosome recycling factor [Listeria monocytogenes HPB2262]
gi|293589952|gb|EFF98286.1| ribosome recycling factor [Listeria monocytogenes J2818]
gi|293593865|gb|EFG01626.1| ribosome recycling factor [Listeria monocytogenes FSL J1-194]
gi|300513883|gb|EFK40948.1| ribosome recycling factor [Listeria monocytogenes FSL N1-017]
gi|328468599|gb|EGF39599.1| ribosome recycling factor [Listeria monocytogenes J1816]
gi|328475037|gb|EGF45825.1| ribosome recycling factor [Listeria monocytogenes J1-220]
gi|332311757|gb|EGJ24852.1| Ribosome-recycling factor [Listeria monocytogenes str. Scott A]
gi|345533957|gb|AEO03398.1| ribosome recycling factor [Listeria monocytogenes J0161]
gi|345536859|gb|AEO06299.1| ribosome recycling factor [Listeria monocytogenes 10403S]
gi|346424136|gb|AEO25661.1| ribosome recycling factor [Listeria monocytogenes FSL R2-561]
gi|346646218|gb|AEO38843.1| ribosome recycling factor [Listeria monocytogenes Finland 1998]
gi|384390810|gb|AFH79880.1| ribosome recycling factor [Listeria monocytogenes 07PF0776]
gi|404218856|emb|CBY70220.1| ribosome recycling factor [Listeria monocytogenes ATCC 19117]
gi|404221731|emb|CBY73094.1| ribosome recycling factor [Listeria monocytogenes SLCC2378]
gi|404224643|emb|CBY76005.1| ribosome recycling factor [Listeria monocytogenes SLCC2540]
gi|404227503|emb|CBY48908.1| ribosome recycling factor [Listeria monocytogenes SLCC2755]
gi|404230438|emb|CBY51842.1| ribosome recycling factor [Listeria monocytogenes SLCC5850]
gi|404233307|emb|CBY54710.1| ribosome recycling factor [Listeria monocytogenes SLCC2372]
gi|404236243|emb|CBY57645.1| ribosome recycling factor [Listeria monocytogenes SLCC2479]
gi|404239089|emb|CBY60490.1| ribosome recycling factor [Listeria monocytogenes SLCC7179]
gi|404245661|emb|CBY03886.1| ribosome recycling factor [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406361115|emb|CBY67388.1| ribosome recycling factor [Listeria monocytogenes L312]
gi|424013372|emb|CCO63912.1| Ribosome-recycling factor [Listeria monocytogenes serotype 4b str.
LL195]
gi|441470985|emb|CCQ20740.1| Ribosome-recycling factor [Listeria monocytogenes]
gi|441474112|emb|CCQ23866.1| Ribosome-recycling factor [Listeria monocytogenes N53-1]
Length = 185
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 128/176 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +ME+ + ++R GR+N ++LD++ V+YYG+ + +A I+ P++ LLI P
Sbjct: 10 KEKMEKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAATPVNQMASISVPEARMLLITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+ L IEKAI+ SDLG+TPNNDG V+RL++PQLT ERRKEL K V K+AEE KVAVR
Sbjct: 70 YDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRR+A + +KL+K ++ED+++ D+QKLTDE +K IDSI K KE E+L+V
Sbjct: 130 NIRREANEELKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITKDKEAEILEV 185
>gi|422415810|ref|ZP_16492767.1| ribosome recycling factor [Listeria innocua FSL J1-023]
gi|313623929|gb|EFR94035.1| ribosome recycling factor [Listeria innocua FSL J1-023]
Length = 185
Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 128/176 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +ME+ + ++R GR+N ++LD++ V+YYG+ + +A I+ P++ LLI P
Sbjct: 10 KEKMEKAEQALTRQLGTIRAGRANASLLDRLTVDYYGAATPVNQMASISVPEARMLLITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+ L IEKAI+ SDLG+TPNNDG V+RL++PQLT ERRKEL K V K+AEE KVAVR
Sbjct: 70 YDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRR+A + +KL+K ++ED+++ D+QKLTDE +K IDSI K KE E+L+V
Sbjct: 130 NIRREANEELKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITKDKEAEILEV 185
>gi|220903796|ref|YP_002479108.1| ribosome recycling factor [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219868095|gb|ACL48430.1| ribosome recycling factor [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 186
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 91/182 (50%), Positives = 131/182 (71%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
SI D + RME+ + + +F +RTGR+ A++D I+ +YYG+P + +A I PDS
Sbjct: 5 SILLDAEDRMEKALAALDRDFAKLRTGRATTALVDGIKADYYGTPTPISQMASIAVPDSR 64
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
+L IQP+DK + IEKAI+ SDLG+TP NDG++IR+ +P LT ERRKELSKV K +EE
Sbjct: 65 TLTIQPWDKGGIALIEKAILKSDLGLTPVNDGKLIRIVMPPLTEERRKELSKVARKYSEE 124
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
GKVAVRN+RRDA + +KL+KEK ++ED K + D+QKLTD+Y+ ++D KEKE++
Sbjct: 125 GKVAVRNVRRDANDSLKKLEKEKTITEDEQKRATDDVQKLTDKYVAEVDKRCAAKEKEIM 184
Query: 275 KV 276
++
Sbjct: 185 EI 186
>gi|374851803|dbj|BAL54752.1| ribosome recycling factor [uncultured Chloroflexi bacterium]
Length = 185
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 89/181 (49%), Positives = 134/181 (74%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I KD + RM++ I ++ + +RTGR++PA+++KI VEYYG P L +A I P+ S
Sbjct: 5 ILKDAEGRMKQAIQVLVDDLAGIRTGRASPALVEKIPVEYYGVPTPLMQLASITVPEPRS 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LLI+P+D S+LK+IEKAI+SS+LG+ PNNDG+ IRL LP LT ERR+EL K+V + EE
Sbjct: 65 LLIKPFDPSALKAIEKAILSSNLGLPPNNDGKAIRLNLPPLTEERRRELVKLVHARLEEA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
+VA+RN+RR+AL + +KEK +SED +K +LQKLTD Y+++++ + ++KE E+++
Sbjct: 125 RVAIRNVRREALNDMREAEKEKLISEDEMKRGEEELQKLTDRYIEEVNRLGEKKEAEIME 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|308048672|ref|YP_003912238.1| ribosome recycling factor [Ferrimonas balearica DSM 9799]
gi|307630862|gb|ADN75164.1| ribosome recycling factor [Ferrimonas balearica DSM 9799]
Length = 185
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 90/183 (49%), Positives = 134/183 (73%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I+KD K RM ++++ +T + VRTGR++P++LD I V YYG LK + + T DS
Sbjct: 3 NDIKKDAKDRMVKSVEATQTQMSKVRTGRAHPSLLDSIMVSYYGVDTPLKQVGNVTTEDS 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L + +DKS ++++EKAI++SDLG+ PN+ G +IR+ LP LT ERR++L KVV +AE
Sbjct: 63 RTLAVTVFDKSMIQAVEKAIMASDLGLNPNSAGTMIRIPLPPLTEERRRDLVKVVRAEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
G+VAVRNIRRDA + L+KEK++SED+ + D+QKLTD+Y+K+ID+I KEKEL
Sbjct: 123 HGRVAVRNIRRDANSDIKALEKEKEISEDDARRGEDDIQKLTDQYVKQIDAILADKEKEL 182
Query: 274 LKV 276
++V
Sbjct: 183 MEV 185
>gi|158338603|ref|YP_001519780.1| ribosome recycling factor [Acaryochloris marina MBIC11017]
gi|158308844|gb|ABW30461.1| ribosome recycling factor [Acaryochloris marina MBIC11017]
Length = 173
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 87/173 (50%), Positives = 124/173 (71%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M+++I+ ++ + N++RTGR+N ++LD+I VEYYG+ L+S+A I+TPD+S++ IQP+D
Sbjct: 1 MQKSIEAMKRSLNTIRTGRANASLLDRITVEYYGTETPLRSLATISTPDASTITIQPFDP 60
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
SSL IE++I SD+G+ PNNDG IRL +P LT ERRK+ K+ K AEEGKVA+RNIR
Sbjct: 61 SSLTDIERSISLSDVGLVPNNDGSAIRLNIPPLTEERRKDFVKMAGKIAEEGKVAIRNIR 120
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RDA+ K K +SED KDL +Q LTD+Y ++D I +KE E+ V
Sbjct: 121 RDAIDTARKQGKSGDISEDESKDLQDKIQGLTDKYTGQVDKILAEKETEITTV 173
>gi|291563192|emb|CBL42008.1| ribosome recycling factor [butyrate-producing bacterium SS3/4]
Length = 184
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 134/174 (77%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+ME++ID + + S+R GR+NP +LDKI+V+YYG+P ++ + I+ P++ +LIQP++
Sbjct: 11 KMEKSIDALLNEYASIRAGRANPHVLDKIKVDYYGTPTPIQQVGNISVPEARMILIQPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS ++ IEKAI +S+LG+ P+NDG VIRL P+LT ERRKEL+K V K+ + KVA+RNI
Sbjct: 71 KSLIRPIEKAIQTSELGINPSNDGSVIRLVFPELTEERRKELAKDVKKKGDGAKVAIRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA +A++K++K ++SED++K+L+ +QKLTD+ ++KID + K KE+L V
Sbjct: 131 RRDANEAFKKMEKSDEISEDDLKELTEKVQKLTDKSIEKIDKAVENKTKEILTV 184
>gi|345860696|ref|ZP_08812986.1| ribosome recycling factor [Desulfosporosinus sp. OT]
gi|344326192|gb|EGW37680.1| ribosome recycling factor [Desulfosporosinus sp. OT]
Length = 185
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 88/183 (48%), Positives = 134/183 (73%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S + KD + RM + +D +R + ++R GR+NP++LDK+ VEYYG+P + +A I+TP+
Sbjct: 3 SEVIKDAEERMHKGVDALRREYATIRAGRANPSVLDKVMVEYYGTPTPINQLANISTPEP 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
L+IQ +DKS L +IEKAI+ SDLG+ P++DG VIRL +PQLT++RR EL K V K+AE
Sbjct: 63 RMLVIQSWDKSVLPAIEKAIMKSDLGLNPSSDGTVIRLIIPQLTAQRRAELVKKVKKEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
E +VAVRN+RRD +KL+K+ + SED++K D+QK+TD+ +K+I+ + + KE E+
Sbjct: 123 EARVAVRNVRRDVNDKLKKLEKDHEASEDDIKRAQEDVQKMTDKIIKEIEHVMETKESEI 182
Query: 274 LKV 276
+V
Sbjct: 183 TEV 185
>gi|299823044|ref|ZP_07054930.1| ribosome recycling factor [Listeria grayi DSM 20601]
gi|299816573|gb|EFI83811.1| ribosome recycling factor [Listeria grayi DSM 20601]
Length = 185
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 87/176 (49%), Positives = 131/176 (74%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
KARME+ + ++R GR+N ++LD+I V+YYG+P + IA I+ P++ L+I P
Sbjct: 10 KARMEKAEHSLSKQLGTIRAGRANASLLDRITVDYYGAPTPINQIASISIPEARLLVITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
+DK+SL+ +EKAI+ SDLG++PNNDG V+RL++PQ T ERR+EL K V K+AEE KVA+R
Sbjct: 70 FDKNSLEDVEKAILKSDLGLSPNNDGTVLRLSIPQPTEERRRELVKEVKKEAEEAKVAIR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRRDA + +KL+K +++ED+++ D+Q +TDE +K+ID I K KE E+++V
Sbjct: 130 NIRRDANEELKKLEKSGEITEDDLRSYGEDVQAITDESIKRIDEIAKNKEAEIMEV 185
>gi|387927006|ref|ZP_10129685.1| ribosome recycling factor [Bacillus methanolicus PB1]
gi|387589150|gb|EIJ81470.1| ribosome recycling factor [Bacillus methanolicus PB1]
Length = 185
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 89/178 (50%), Positives = 128/178 (71%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ K +M + I S+R GR++ ++LD++ VEYYG P + +A I P+ L+I
Sbjct: 8 NAKEKMTKAIQAYTRELASIRAGRASASLLDRVTVEYYGVPTPVNQLAGITVPEPRLLVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYDKS + IEKAI+ SDLG+ P +DG +IR+ +PQLT ERRKEL+KVV K++EE KVA
Sbjct: 68 QPYDKSIIGEIEKAILKSDLGLNPTSDGSLIRIAIPQLTEERRKELAKVVKKESEEAKVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA +KL+K +++ED+++ S D+QKLTDE++ KID I K KEKE+L++
Sbjct: 128 IRNIRRDANDDLKKLEKSGEITEDDLRGYSDDIQKLTDEHINKIDQITKDKEKEILEI 185
>gi|354559637|ref|ZP_08978884.1| Ribosome-recycling factor [Desulfitobacterium metallireducens DSM
15288]
gi|353541274|gb|EHC10743.1| Ribosome-recycling factor [Desulfitobacterium metallireducens DSM
15288]
Length = 185
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 86/183 (46%), Positives = 133/183 (72%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S + KD + RM + ++ +R + +R GR+NP+ML+++ VEYYG+P + +A I+ P++
Sbjct: 3 SDVLKDAEDRMRKGVESLRKEYTVIRAGRANPSMLERVMVEYYGTPTPVNQLANISVPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+QP+DK++L +IEK I+ SDLG+ P++DG VIRL +PQLT+ERR EL K V K+AE
Sbjct: 63 RMLLLQPWDKTALPAIEKGIMKSDLGLNPSSDGNVIRLIIPQLTAERRTELVKTVKKKAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+ +V +RNIRRD +KL+K+ SED VK D+QK+TD+++K+ID+I KE+E+
Sbjct: 123 DSRVVIRNIRRDTNDQLKKLEKDHTSSEDEVKRAQDDVQKMTDKFIKEIDTIMDTKEREI 182
Query: 274 LKV 276
+V
Sbjct: 183 TEV 185
>gi|333979940|ref|YP_004517885.1| Ribosome-recycling factor [Desulfotomaculum kuznetsovii DSM 6115]
gi|333823421|gb|AEG16084.1| Ribosome-recycling factor [Desulfotomaculum kuznetsovii DSM 6115]
Length = 194
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 86/178 (48%), Positives = 132/178 (74%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ ++ M++T+++V+ F S+R GR+ PA+LDK+ V YYG+P + +A I+ P+ L+I
Sbjct: 17 EAESNMKKTVELVKKEFASLRAGRATPALLDKVLVSYYGTPTPINQLATISVPEPRLLVI 76
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+DK+ L IE+AI+ SDLG+TP +DG VIRL +PQLT ERR EL KVV K+AEEG+VA
Sbjct: 77 QPWDKTILPEIERAILKSDLGITPTSDGTVIRLAIPQLTQERRAELVKVVKKKAEEGRVA 136
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRR+ ++ QK ++SED ++ ++QKLTD+Y+K+ID + KE+E+++V
Sbjct: 137 IRNIRRELNDKVKQQQKNGEISEDELRRTQDEIQKLTDKYIKEIDQLVSAKEQEIMQV 194
>gi|429205340|ref|ZP_19196617.1| ribosome recycling factor [Lactobacillus saerimneri 30a]
gi|428146412|gb|EKW98651.1| ribosome recycling factor [Lactobacillus saerimneri 30a]
Length = 187
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 87/178 (48%), Positives = 132/178 (74%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+ + RM +T D +R +R GR+N ++L+++ V YYG+P L +AQI P++ LL
Sbjct: 9 KENQERMAKTEDALRRELGKIRAGRANASLLNQVMVNYYGAPTPLNQMAQITVPEARVLL 68
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
+ PYDKSSLK +E A+++++LG++P NDG+VIRL +PQLT ERRKE++K V +AEE KV
Sbjct: 69 VNPYDKSSLKDVEHALLAANLGISPANDGDVIRLVIPQLTEERRKEIAKEVKAKAEEAKV 128
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
A+RNIRRD + A +K +K+ +L+ED++ DL QK+TD+ +K ID+I +KEKE+L+
Sbjct: 129 AIRNIRRDIMDALKKSEKDGELTEDDLHDLEDVAQKVTDQSIKNIDAIRAEKEKEILE 186
>gi|16800419|ref|NP_470687.1| ribosome recycling factor [Listeria innocua Clip11262]
gi|423100393|ref|ZP_17088100.1| ribosome recycling factor [Listeria innocua ATCC 33091]
gi|22001944|sp|Q92C40.1|RRF_LISIN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|16413824|emb|CAC96582.1| frr [Listeria innocua Clip11262]
gi|370793394|gb|EHN61232.1| ribosome recycling factor [Listeria innocua ATCC 33091]
Length = 185
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 128/176 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +ME+ + ++R GR+N ++LD++ V+YYG+ + +A I+ P++ LLI P
Sbjct: 10 KEKMEKAEQALTRQLGTIRAGRANASLLDRLTVDYYGAATPVNQMASISVPEARMLLITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+ L IEKAI+ SDLG+TPNNDG V+RL++PQLT ERRKEL K V K+AEE KVAVR
Sbjct: 70 YDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRR+A + +KL+K ++ED+++ D+QKLTDE +K IDSI K KE E+L+V
Sbjct: 130 NIRREANEDLKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITKDKEAEILEV 185
>gi|288575126|ref|ZP_06393483.1| ribosome recycling factor [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288570867|gb|EFC92424.1| ribosome recycling factor [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 186
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 128/176 (72%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D++ +M + +D ++ F +RTGR++P ++ I+V+YYG+ LK +A I+ P+ SLLI
Sbjct: 8 DLEEKMRKAVDFLKGEFVGIRTGRAHPGLVSDIKVDYYGASTPLKQLATISVPEGRSLLI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
P+DK+ LK +EKAI++SDLG+TP NDG+VIRL LP+LT +RRKEL+K+V K +EE ++A
Sbjct: 68 TPFDKTVLKDLEKAILASDLGVTPQNDGQVIRLNLPELTGDRRKELTKMVHKLSEEARIA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
VRN+RRD Y+K E ++ ED D +QK+TD Y+++ID + K KE+E+L
Sbjct: 128 VRNLRRDCNDFYKKKLNESEIGEDQYHDFLDQIQKITDGYIQEIDKVMKDKEEEIL 183
>gi|116072186|ref|ZP_01469453.1| ribosome releasing factor [Synechococcus sp. BL107]
gi|116064708|gb|EAU70467.1| ribosome releasing factor [Synechococcus sp. BL107]
Length = 182
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 88/179 (49%), Positives = 131/179 (73%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
KD++A M ++++ + NFN++RTGR+N ++LD+I VEYYG+ LKS+A ++TPDS ++
Sbjct: 4 KDLEASMHKSLEATQRNFNTIRTGRANSSLLDRISVEYYGAETPLKSLATLSTPDSQTIQ 63
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D S+L SIEKAI S+LG TPNNDG+VIR+ +P LT ERRKE K+ ++ AEEGKV
Sbjct: 64 IQPFDISALASIEKAIAMSELGFTPNNDGKVIRINVPPLTEERRKEFCKLASRYAEEGKV 123
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RN+RRDA+ +K +K+ SED +D +QK+ D+ + ++ +KE +LKV
Sbjct: 124 ALRNLRRDAIDKVKKQEKDGDFSEDQSRDEQDSIQKVLDKNIVALEKQLAEKEAAILKV 182
>gi|383765068|ref|YP_005444050.1| ribosome-recycling factor [Caldilinea aerophila DSM 14535 = NBRC
104270]
gi|381385336|dbj|BAM02153.1| ribosome-recycling factor [Caldilinea aerophila DSM 14535 = NBRC
104270]
Length = 185
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 131/178 (73%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D K RM++ I+ +R + ++RTGR++PA+++ I V+YYG P L+ +A I+ P++ +LI
Sbjct: 8 DAKERMDKAIEALRHDLMTIRTGRASPALVEHIPVDYYGVPTPLQQLATISVPEAQQILI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+PY + + +IEKAI SDLG+TP NDG+VIRLT+P L ERR+EL+K+V K+ EE +VA
Sbjct: 68 RPYTRGDIPAIEKAIAKSDLGLTPTNDGQVIRLTIPPLNEERRRELTKLVNKRGEEARVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA K +L+KE +SED K +Q+LTD++++++D I K+K+ E++ V
Sbjct: 128 IRNIRRDANKDLAELEKESLISEDERKRAEEKIQELTDQHIRRVDEIVKEKDAEIMTV 185
>gi|134299822|ref|YP_001113318.1| ribosome recycling factor [Desulfotomaculum reducens MI-1]
gi|172044307|sp|A4J5Z0.1|RRF_DESRM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|134052522|gb|ABO50493.1| ribosome recycling factor [Desulfotomaculum reducens MI-1]
Length = 184
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 130/173 (75%), Gaps = 1/173 (0%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M++++D+VR F S+R GR+ P++LDK+ V YYG+P L +A I+ P++ L+IQP+DK
Sbjct: 13 MKKSVDVVRREFASLRAGRATPSILDKVTVSYYGTPTPLNQLANISVPEARVLVIQPWDK 72
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
S + +EKAI+ SD+G+TP++DG VIRL +PQLT ERR EL KV+ K+AEEG+VAVRNIR
Sbjct: 73 SVIPEVEKAILKSDVGITPSSDGTVIRLIIPQLTQERRTELVKVIKKKAEEGRVAVRNIR 132
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RD + + QK+ + ED K +LQKLTD+Y+K+ID + K KE+E+++V
Sbjct: 133 RDTNDSIKAKQKD-GIPEDEAKRGQDELQKLTDKYVKEIDEMVKAKEQEIMQV 184
>gi|350566743|ref|ZP_08935386.1| ribosome recycling factor [Peptoniphilus indolicus ATCC 29427]
gi|348661733|gb|EGY78411.1| ribosome recycling factor [Peptoniphilus indolicus ATCC 29427]
Length = 202
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 135/183 (73%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S I+KD + +M ++I + + + S+R GR+NP +LDKI ++YYG L IA I+ P+
Sbjct: 20 SDIKKDSEQKMSKSISVYKEDLQSIRAGRANPTLLDKIAIDYYGQTTPLNQIAGISAPEP 79
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
L IQP+D +++ IEKAI+ SDLG+TP+NDG+++RL +PQLT ERRK+L KVV K +E
Sbjct: 80 RLLAIQPWDANTIPEIEKAILKSDLGITPSNDGKIVRLVIPQLTEERRKDLIKVVKKNSE 139
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
KVA+RNIRRD+++ +KL+K +++ED+ K ++QK+TD+Y++++D I K KE EL
Sbjct: 140 NAKVALRNIRRDSMEEIKKLEKSNEITEDDRKRAEDEIQKITDKYIEEVDKITKDKESEL 199
Query: 274 LKV 276
L++
Sbjct: 200 LEI 202
>gi|422412781|ref|ZP_16489740.1| ribosome recycling factor, partial [Listeria innocua FSL S4-378]
gi|313619142|gb|EFR90928.1| ribosome recycling factor [Listeria innocua FSL S4-378]
Length = 176
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 128/176 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +ME+ + ++R GR+N ++LD++ V+YYG+ + +A I+ P++ LLI P
Sbjct: 1 KEKMEKAEQALTRQLGTIRAGRANASLLDRLTVDYYGAATPVNQMASISVPEARMLLITP 60
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+ L IEKAI+ SDLG+TPNNDG V+RL++PQLT ERRKEL K V K+AEE KVAVR
Sbjct: 61 YDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVR 120
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRR+A + +KL+K ++ED+++ D+QKLTDE +K IDSI K KE E+L+V
Sbjct: 121 NIRREANEDLKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITKDKEAEILEV 176
>gi|306819855|ref|ZP_07453509.1| ribosome recycling factor [Eubacterium yurii subsp. margaretiae
ATCC 43715]
gi|402309157|ref|ZP_10828153.1| ribosome recycling factor [Eubacterium sp. AS15]
gi|304552102|gb|EFM40039.1| ribosome recycling factor [Eubacterium yurii subsp. margaretiae
ATCC 43715]
gi|400373276|gb|EJP26210.1| ribosome recycling factor [Eubacterium sp. AS15]
Length = 185
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 90/181 (49%), Positives = 129/181 (71%)
Query: 93 KSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPD 152
K+ I + +ME+TI +++ + N++RTGR+NP MLDK+ V+YYG+ +K IA I++PD
Sbjct: 2 KTQIYQTTNEKMEKTISVLKEDLNTIRTGRANPKMLDKLTVDYYGTVTPVKQIAAISSPD 61
Query: 153 SSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQA 212
+L IQP+DKSSL IEKAI +DLG+ P NDG +IR+++PQLT ERRKEL K K
Sbjct: 62 PRTLQIQPWDKSSLHLIEKAIQVADLGVNPTNDGLIIRISIPQLTEERRKELVKQAQKMG 121
Query: 213 EEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKE 272
E+ KVA+RN+RRDA +K +K+ ++ED K D+QKLTDE++K ID + KEK+
Sbjct: 122 EQAKVAIRNLRRDANDLIKKGEKDGSIAEDEAKKELDDIQKLTDEHIKAIDGVIANKEKD 181
Query: 273 L 273
+
Sbjct: 182 I 182
>gi|302872259|ref|YP_003840895.1| ribosome recycling factor [Caldicellulosiruptor obsidiansis OB47]
gi|312135566|ref|YP_004002904.1| ribosome recycling factor [Caldicellulosiruptor owensensis OL]
gi|312793072|ref|YP_004025995.1| ribosome recycling factor [Caldicellulosiruptor kristjanssonii
177R1B]
gi|344996717|ref|YP_004799060.1| ribosome-recycling factor [Caldicellulosiruptor lactoaceticus 6A]
gi|302575118|gb|ADL42909.1| ribosome recycling factor [Caldicellulosiruptor obsidiansis OB47]
gi|311775617|gb|ADQ05104.1| ribosome recycling factor [Caldicellulosiruptor owensensis OL]
gi|312180212|gb|ADQ40382.1| ribosome recycling factor [Caldicellulosiruptor kristjanssonii
177R1B]
gi|343964936|gb|AEM74083.1| Ribosome-recycling factor [Caldicellulosiruptor lactoaceticus 6A]
Length = 184
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 128/174 (73%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++ I+ ++ F +VR GR+NP +LDK+ V+YYG P + +A I P++ ++IQP++
Sbjct: 11 KMKKAIETLKEEFATVRAGRANPHILDKVMVDYYGVPTPIPQVASITVPEARMIVIQPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
LK IEKAI SDLG+ P NDG+VIRL P+LT ERRKEL K V K AE+ KVA+RNI
Sbjct: 71 ARMLKEIEKAIQKSDLGVNPTNDGKVIRLIFPELTEERRKELVKQVKKMAEDAKVAIRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RR+AL Y+K++K +++ED++KD D+QKL D+Y+++I+ + KEKE+++V
Sbjct: 131 RREALDEYKKMKKNNEITEDDLKDAEEDVQKLHDKYIEQIEKLLSAKEKEIMEV 184
>gi|126699754|ref|YP_001088651.1| ribosome recycling factor [Clostridium difficile 630]
gi|254975733|ref|ZP_05272205.1| ribosome recycling factor [Clostridium difficile QCD-66c26]
gi|255093120|ref|ZP_05322598.1| ribosome recycling factor [Clostridium difficile CIP 107932]
gi|255101273|ref|ZP_05330250.1| ribosome recycling factor [Clostridium difficile QCD-63q42]
gi|255307149|ref|ZP_05351320.1| ribosome recycling factor [Clostridium difficile ATCC 43255]
gi|255314862|ref|ZP_05356445.1| ribosome recycling factor [Clostridium difficile QCD-76w55]
gi|255517536|ref|ZP_05385212.1| ribosome recycling factor [Clostridium difficile QCD-97b34]
gi|255650647|ref|ZP_05397549.1| ribosome recycling factor [Clostridium difficile QCD-37x79]
gi|260683737|ref|YP_003215022.1| ribosome recycling factor [Clostridium difficile CD196]
gi|260687397|ref|YP_003218531.1| ribosome recycling factor [Clostridium difficile R20291]
gi|306520574|ref|ZP_07406921.1| ribosome recycling factor [Clostridium difficile QCD-32g58]
gi|384361366|ref|YP_006199218.1| ribosome recycling factor [Clostridium difficile BI1]
gi|423083953|ref|ZP_17072481.1| ribosome recycling factor [Clostridium difficile 002-P50-2011]
gi|423087348|ref|ZP_17075736.1| ribosome recycling factor [Clostridium difficile 050-P50-2011]
gi|423088608|ref|ZP_17076987.1| ribosome recycling factor [Clostridium difficile 70-100-2010]
gi|122973796|sp|Q185S5.1|RRF_CLOD6 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|115251191|emb|CAJ69022.1| Ribosome-recycling factor [Clostridium difficile 630]
gi|260209900|emb|CBA63839.1| ribosome recycling factor [Clostridium difficile CD196]
gi|260213414|emb|CBE05060.1| ribosome recycling factor [Clostridium difficile R20291]
gi|357543751|gb|EHJ25766.1| ribosome recycling factor [Clostridium difficile 002-P50-2011]
gi|357544766|gb|EHJ26753.1| ribosome recycling factor [Clostridium difficile 050-P50-2011]
gi|357559494|gb|EHJ40942.1| ribosome recycling factor [Clostridium difficile 70-100-2010]
Length = 185
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 88/184 (47%), Positives = 134/184 (72%)
Query: 93 KSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPD 152
K I K ++ +M TID ++ F ++R GR+N MLDKI V+YYG+P + I I+ P+
Sbjct: 2 KLEIHKQLEEKMNGTIDALKFEFGTIRAGRANAQMLDKIRVDYYGTPTPINQIGAISVPE 61
Query: 153 SSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQA 212
L+I P+DKS++ IEKAI +SDLG+ P+NDGEVIRL++P LT ERRKEL+K +K A
Sbjct: 62 PRILMISPWDKSAMHEIEKAIANSDLGLNPSNDGEVIRLSVPALTEERRKELAKKASKAA 121
Query: 213 EEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKE 272
EE KV +RN RRDA + +K++K +L+ED +K ++QK+TD+++K+ID++ +KEK+
Sbjct: 122 EEFKVRIRNERRDANEKIKKMEKGGELTEDELKKAQDEVQKMTDKFIKEIDTLLSKKEKD 181
Query: 273 LLKV 276
+++V
Sbjct: 182 IMEV 185
>gi|254443219|ref|ZP_05056695.1| ribosome recycling factor [Verrucomicrobiae bacterium DG1235]
gi|198257527|gb|EDY81835.1| ribosome recycling factor [Verrucomicrobiae bacterium DG1235]
Length = 186
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 90/174 (51%), Positives = 129/174 (74%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
++E+ I+ F V TG++NP M++ I VE YGS +SLK +A I TPD+ ++ IQP+D
Sbjct: 13 KVEKAIEHTANEFAGVNTGKANPGMVEGISVEAYGSQMSLKEMAAITTPDARTIAIQPWD 72
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS +K+IEKAI++S++G+TP G+VIRL LP+LT ERR+ L KVV+KQAE+G+VA+RN
Sbjct: 73 KSVIKAIEKAILTSNIGITPAIMGDVIRLPLPELTGERRQSLVKVVSKQAEDGRVAIRNS 132
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA+ A +KLQK+ +SED++K D+Q TDE +KKI+ + KEK+L V
Sbjct: 133 RRDAMDAIKKLQKDGDISEDDLKRCEKDIQNTTDESIKKINDLLAAKEKDLTTV 186
>gi|450046322|ref|ZP_21838879.1| ribosome recycling factor [Streptococcus mutans N34]
gi|449199098|gb|EMC00182.1| ribosome recycling factor [Streptococcus mutans N34]
Length = 185
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/183 (50%), Positives = 127/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K R E++ + F S+R G +N ++LD+IEVEYYG P L +A I P++
Sbjct: 3 NAIVEKAKERFEQSHQSLAREFGSIRAGHANASLLDRIEVEYYGVPTPLNQLASITVPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+ P+DKSSLK IE AI +SD+G+ P NDG VIRL +P LT E RKEL+K V K E
Sbjct: 63 RVLLVSPFDKSSLKDIEHAINASDIGINPANDGSVIRLVIPALTEETRKELAKEVKKVGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
KVA+RNIRRDA+ +K +K K+++ED +K L D+QK+TDE +K IDS+ KEKEL
Sbjct: 123 NAKVAIRNIRRDAMDEAKKQEKIKEITEDELKSLEKDIQKVTDEAVKHIDSMTANKEKEL 182
Query: 274 LKV 276
L+V
Sbjct: 183 LEV 185
>gi|240146850|ref|ZP_04745451.1| ribosome recycling factor [Roseburia intestinalis L1-82]
gi|257200994|gb|EEU99278.1| ribosome recycling factor [Roseburia intestinalis L1-82]
gi|291536044|emb|CBL09156.1| ribosome recycling factor [Roseburia intestinalis M50/1]
gi|291538537|emb|CBL11648.1| ribosome recycling factor [Roseburia intestinalis XB6B4]
Length = 184
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 128/174 (73%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++T++ + F S+R GR+NP +LDK++V+YYG+P +++ +A +N P+ + IQP++
Sbjct: 11 KMQKTMNNLSEEFGSIRAGRANPHVLDKLKVDYYGTPTAIQQVANVNVPEPRMIQIQPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
S +K IEKAI++SDLG+ P NDG+VIRL P+LT ERRKEL+K V K+ E KVA+RNI
Sbjct: 71 ASMVKEIEKAILTSDLGINPTNDGKVIRLLFPELTEERRKELAKDVKKKGENAKVAIRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA +++KL K +SED VK+L QK+TD+Y+ +ID + K KE+L V
Sbjct: 131 RRDANDSFKKLSKSADVSEDEVKELEDGAQKMTDKYITEIDKAVEAKTKEILTV 184
>gi|33239972|ref|NP_874914.1| ribosome recycling factor [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
gi|39932093|sp|Q7VD62.1|RRF_PROMA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|33237498|gb|AAP99566.1| Ribosome recycling factor [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
Length = 182
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/181 (47%), Positives = 134/181 (74%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
+ ++V+ M+++++ + NFN++RTGR+N ++LD++ VEYYG+ LKS+A I+TPDS +
Sbjct: 2 LTQEVELNMQKSVEACQRNFNTIRTGRANTSLLDRLTVEYYGADTPLKSLATISTPDSQT 61
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L IQP+D SL IEKAI SDLG TPNNDG++IR+ +P LT ERRK+ K+ +K AEE
Sbjct: 62 LAIQPFDLGSLGLIEKAISISDLGFTPNNDGKIIRINIPPLTEERRKQFCKLASKYAEEA 121
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
K+++RNIRRDA++ + +K+ + SED +D +QK+T++Y+ +I+ KE+E+LK
Sbjct: 122 KISLRNIRRDAIEKIKGSEKDGEFSEDQSRDQQDSIQKITNKYINEIEKNLSGKEEEILK 181
Query: 276 V 276
V
Sbjct: 182 V 182
>gi|406670870|ref|ZP_11078115.1| ribosome recycling factor [Facklamia hominis CCUG 36813]
gi|405582386|gb|EKB56392.1| ribosome recycling factor [Facklamia hominis CCUG 36813]
Length = 185
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 89/176 (50%), Positives = 126/176 (71%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K KARM+++I+ + S+R G +N ++LD++ VEYYG+P L +A I P+ L+
Sbjct: 7 KTTKARMDKSIEAFQRELGSIRAGVANASILDRVSVEYYGAPTPLNQLASITIPEPRMLM 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I PYDK SLK IEK I+ SD+G+TPNNDG+VIRLT+P LT ERR++L KVV K+ E K+
Sbjct: 67 ISPYDKGSLKDIEKGILMSDVGITPNNDGDVIRLTIPALTKERREDLVKVVGKEQENAKI 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+VRNIRRDA+ +K++K +L+ED+VK D+QKLTD +ID + K KE+E+
Sbjct: 127 SVRNIRRDAIDDCKKMEKNNELTEDDVKRYEKDIQKLTDNATDEIDRLAKVKEEEI 182
>gi|222529797|ref|YP_002573679.1| ribosome recycling factor [Caldicellulosiruptor bescii DSM 6725]
gi|312127157|ref|YP_003992031.1| ribosome recycling factor [Caldicellulosiruptor hydrothermalis 108]
gi|312621978|ref|YP_004023591.1| ribosome recycling factor [Caldicellulosiruptor kronotskyensis
2002]
gi|254809487|sp|B9MKP8.1|RRF_ANATD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|222456644|gb|ACM60906.1| ribosome recycling factor [Caldicellulosiruptor bescii DSM 6725]
gi|311777176|gb|ADQ06662.1| ribosome recycling factor [Caldicellulosiruptor hydrothermalis 108]
gi|312202445|gb|ADQ45772.1| ribosome recycling factor [Caldicellulosiruptor kronotskyensis
2002]
Length = 184
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 128/174 (73%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++ I+ ++ F ++R GR+NP +LDK+ V+YYG P + +A I P++ ++IQP++
Sbjct: 11 KMKKAIETLKEEFATIRAGRANPHILDKVMVDYYGVPTPIPQVASITVPEARMIVIQPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
LK IEKAI SDLG+ P NDG+VIRL P+LT ERRKEL K V K AE+ KVA+RNI
Sbjct: 71 ARMLKEIEKAIQKSDLGVNPTNDGKVIRLIFPELTEERRKELVKQVKKMAEDAKVAIRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RR+AL Y+K++K +++ED++KD D+QKL D+Y+++I+ + KEKE+++V
Sbjct: 131 RREALDEYKKMKKNNEITEDDLKDAEEDVQKLHDKYIEQIEKLLSAKEKEIMEV 184
>gi|260892482|ref|YP_003238579.1| ribosome recycling factor [Ammonifex degensii KC4]
gi|260864623|gb|ACX51729.1| ribosome recycling factor [Ammonifex degensii KC4]
Length = 184
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/173 (48%), Positives = 132/173 (76%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M++ ++ + + ++RTGR++PA+L+K+ V+YYG P + +A I P+ L+IQP+D+
Sbjct: 12 MKKAVEHFKKDLAAIRTGRASPALLEKVMVDYYGVPTPVNQLATITAPEPRLLVIQPWDR 71
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
S + IEKAI+ SDLG+TPNNDG+VIRL LPQLT ERR+EL +V K+AEE +VA+RNIR
Sbjct: 72 SIINEIEKAILKSDLGLTPNNDGQVIRLILPQLTQERREELVRVARKRAEEARVAIRNIR 131
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
R+A ++ QK++ +SED +K L ++QKLT++Y+K++D++ KEKE+++V
Sbjct: 132 REANDELKEKQKKENVSEDEIKRLQGEVQKLTEKYIKEVDNLLAAKEKEIMEV 184
>gi|310659006|ref|YP_003936727.1| ribosome recycling factor [[Clostridium] sticklandii]
gi|308825784|emb|CBH21822.1| ribosome recycling factor [[Clostridium] sticklandii]
Length = 185
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 88/184 (47%), Positives = 137/184 (74%)
Query: 93 KSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPD 152
K I K ++ +ME+TI +++ ++R GR+NP MLD++ V+YYG+ LK +A +++P+
Sbjct: 2 KLDIHKKLEEKMEKTIAVLKDELLTIRAGRANPNMLDRVMVDYYGTMTPLKQMAGVSSPE 61
Query: 153 SSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQA 212
++LIQP+DKS++ SIEKAI+SSDLG P NDG IR+ +PQLT ERRK+L K+VAK
Sbjct: 62 PRTILIQPWDKSAMGSIEKAILSSDLGFNPTNDGNSIRINIPQLTEERRKDLIKLVAKTG 121
Query: 213 EEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKE 272
E+ KVA+RN RR+A +A +K++K +L+ED+ K ++QKLTD ++K ID + +KEK+
Sbjct: 122 EQAKVAIRNERREANEAIKKMEKTSELTEDDSKKAQDEVQKLTDSHIKMIDDMLAKKEKD 181
Query: 273 LLKV 276
+++V
Sbjct: 182 IMEV 185
>gi|422739383|ref|ZP_16794564.1| ribosome recycling factor [Enterococcus faecalis TX2141]
gi|315144762|gb|EFT88778.1| ribosome recycling factor [Enterococcus faecalis TX2141]
Length = 185
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/176 (49%), Positives = 127/176 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +M + + +R +R GR+N ++LD+I+V+YYG+P + +A IN P++ L+I P
Sbjct: 10 KEKMTKAEESLRRELGQIRAGRANASLLDRIQVKYYGAPTPVNQLASINIPEARVLMITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
+DK+S+ IEKAI SD+G++P NDG VIRL +PQLT ERRKEL+K V K+AE KVAVR
Sbjct: 70 FDKNSIADIEKAIQMSDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKEAENSKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N+RRDA+ +K QK ++ED ++ D+QKLTD+ +K ID+I +KE+ELL+V
Sbjct: 130 NVRRDAMDELKKAQKNGDITEDELRSFEKDVQKLTDDSIKNIDAITAEKEQELLEV 185
>gi|227551763|ref|ZP_03981812.1| ribosome recycling factor [Enterococcus faecium TX1330]
gi|257878533|ref|ZP_05658186.1| ribosome recycling factor [Enterococcus faecium 1,230,933]
gi|257883168|ref|ZP_05662821.1| ribosome recycling factor [Enterococcus faecium 1,231,502]
gi|257884335|ref|ZP_05663988.1| ribosome recycling factor [Enterococcus faecium 1,231,501]
gi|257887076|ref|ZP_05666729.1| ribosome recycling factor [Enterococcus faecium 1,141,733]
gi|257889270|ref|ZP_05668923.1| ribosome recycling factor [Enterococcus faecium 1,231,410]
gi|257895641|ref|ZP_05675294.1| ribosome recycling factor [Enterococcus faecium Com12]
gi|257898231|ref|ZP_05677884.1| ribosome recycling factor [Enterococcus faecium Com15]
gi|260560118|ref|ZP_05832296.1| ribosome recycling factor [Enterococcus faecium C68]
gi|261208147|ref|ZP_05922821.1| ribosome recycling factor [Enterococcus faecium TC 6]
gi|289566196|ref|ZP_06446629.1| ribosome recycling factor [Enterococcus faecium D344SRF]
gi|293377748|ref|ZP_06623937.1| ribosome recycling factor [Enterococcus faecium PC4.1]
gi|293556642|ref|ZP_06675207.1| ribosome recycling factor [Enterococcus faecium E1039]
gi|293560147|ref|ZP_06676650.1| ribosome recycling factor [Enterococcus faecium E1162]
gi|293567410|ref|ZP_06678757.1| ribosome recycling factor [Enterococcus faecium E1071]
gi|293570620|ref|ZP_06681671.1| ribosome recycling factor [Enterococcus faecium E980]
gi|294613944|ref|ZP_06693879.1| ribosome recycling factor [Enterococcus faecium E1636]
gi|294620329|ref|ZP_06699645.1| ribosome recycling factor [Enterococcus faecium E1679]
gi|294620756|ref|ZP_06699963.1| ribosome recycling factor [Enterococcus faecium U0317]
gi|314937498|ref|ZP_07844831.1| ribosome recycling factor [Enterococcus faecium TX0133a04]
gi|314942157|ref|ZP_07849011.1| ribosome recycling factor [Enterococcus faecium TX0133C]
gi|314947503|ref|ZP_07850918.1| ribosome recycling factor [Enterococcus faecium TX0082]
gi|314951490|ref|ZP_07854539.1| ribosome recycling factor [Enterococcus faecium TX0133A]
gi|314992580|ref|ZP_07857998.1| ribosome recycling factor [Enterococcus faecium TX0133B]
gi|314995485|ref|ZP_07860585.1| ribosome recycling factor [Enterococcus faecium TX0133a01]
gi|383329043|ref|YP_005354927.1| ribosome recycling factor [Enterococcus faecium Aus0004]
gi|389868866|ref|YP_006376289.1| ribosome recycling factor [Enterococcus faecium DO]
gi|406580781|ref|ZP_11055970.1| ribosome recycling factor [Enterococcus sp. GMD4E]
gi|406583394|ref|ZP_11058468.1| ribosome recycling factor [Enterococcus sp. GMD3E]
gi|406585399|ref|ZP_11060389.1| ribosome recycling factor [Enterococcus sp. GMD2E]
gi|406590576|ref|ZP_11064939.1| ribosome recycling factor [Enterococcus sp. GMD1E]
gi|410937304|ref|ZP_11369165.1| ribosome recycling factor [Enterococcus sp. GMD5E]
gi|415899572|ref|ZP_11551637.1| ribosome recycling factor [Enterococcus faecium E4453]
gi|416141214|ref|ZP_11599351.1| ribosome recycling factor [Enterococcus faecium E4452]
gi|424766476|ref|ZP_18193829.1| ribosome recycling factor [Enterococcus faecalis TX1337RF]
gi|424789287|ref|ZP_18215962.1| ribosome recycling factor [Enterococcus faecium V689]
gi|424797614|ref|ZP_18223191.1| ribosome recycling factor [Enterococcus faecium S447]
gi|424834693|ref|ZP_18259390.1| ribosome recycling factor [Enterococcus faecium R501]
gi|424858792|ref|ZP_18282821.1| ribosome recycling factor [Enterococcus faecium R499]
gi|424864997|ref|ZP_18288883.1| ribosome recycling factor [Enterococcus faecium R497]
gi|424945246|ref|ZP_18360954.1| ribosome recycling factor [Enterococcus faecium R496]
gi|424955123|ref|ZP_18369982.1| ribosome recycling factor [Enterococcus faecium R494]
gi|424958136|ref|ZP_18372802.1| ribosome recycling factor [Enterococcus faecium R446]
gi|424961848|ref|ZP_18376262.1| ribosome recycling factor [Enterococcus faecium P1986]
gi|424964221|ref|ZP_18378336.1| ribosome recycling factor [Enterococcus faecium P1190]
gi|424967997|ref|ZP_18381661.1| ribosome recycling factor [Enterococcus faecium P1140]
gi|424969985|ref|ZP_18383527.1| ribosome recycling factor [Enterococcus faecium P1139]
gi|424973427|ref|ZP_18386705.1| ribosome recycling factor [Enterococcus faecium P1137]
gi|424976817|ref|ZP_18389881.1| ribosome recycling factor [Enterococcus faecium P1123]
gi|424981141|ref|ZP_18393892.1| ribosome recycling factor [Enterococcus faecium ERV99]
gi|424983745|ref|ZP_18396318.1| ribosome recycling factor [Enterococcus faecium ERV69]
gi|424988607|ref|ZP_18400919.1| ribosome recycling factor [Enterococcus faecium ERV38]
gi|424992634|ref|ZP_18404682.1| ribosome recycling factor [Enterococcus faecium ERV26]
gi|424993468|ref|ZP_18405460.1| ribosome recycling factor [Enterococcus faecium ERV168]
gi|424997756|ref|ZP_18409496.1| ribosome recycling factor [Enterococcus faecium ERV165]
gi|425002096|ref|ZP_18413555.1| ribosome recycling factor [Enterococcus faecium ERV161]
gi|425003796|ref|ZP_18415136.1| ribosome recycling factor [Enterococcus faecium ERV102]
gi|425007593|ref|ZP_18418714.1| ribosome recycling factor [Enterococcus faecium ERV1]
gi|425011871|ref|ZP_18422730.1| ribosome recycling factor [Enterococcus faecium E422]
gi|425014959|ref|ZP_18425603.1| ribosome recycling factor [Enterococcus faecium E417]
gi|425018287|ref|ZP_18428742.1| ribosome recycling factor [Enterococcus faecium C621]
gi|425019916|ref|ZP_18430248.1| ribosome recycling factor [Enterococcus faecium C497]
gi|425025814|ref|ZP_18434702.1| ribosome recycling factor [Enterococcus faecium C1904]
gi|425031950|ref|ZP_18437043.1| ribosome recycling factor [Enterococcus faecium 515]
gi|425034609|ref|ZP_18439490.1| ribosome recycling factor [Enterococcus faecium 514]
gi|425039306|ref|ZP_18443858.1| ribosome recycling factor [Enterococcus faecium 513]
gi|425040720|ref|ZP_18445172.1| ribosome recycling factor [Enterococcus faecium 511]
gi|425045080|ref|ZP_18449202.1| ribosome recycling factor [Enterococcus faecium 510]
gi|425048193|ref|ZP_18452114.1| ribosome recycling factor [Enterococcus faecium 509]
gi|425052078|ref|ZP_18455709.1| ribosome recycling factor [Enterococcus faecium 506]
gi|425054647|ref|ZP_18458152.1| ribosome recycling factor [Enterococcus faecium 505]
gi|425059517|ref|ZP_18462853.1| ribosome recycling factor [Enterococcus faecium 504]
gi|425059592|ref|ZP_18462923.1| ribosome recycling factor [Enterococcus faecium 503]
gi|427396285|ref|ZP_18889044.1| ribosome-recycling factor [Enterococcus durans FB129-CNAB-4]
gi|430819857|ref|ZP_19438501.1| ribosome-recycling factor [Enterococcus faecium E0045]
gi|430822632|ref|ZP_19441210.1| ribosome-recycling factor [Enterococcus faecium E0120]
gi|430825597|ref|ZP_19443801.1| ribosome-recycling factor [Enterococcus faecium E0164]
gi|430827730|ref|ZP_19445862.1| ribosome-recycling factor [Enterococcus faecium E0269]
gi|430830816|ref|ZP_19448872.1| ribosome-recycling factor [Enterococcus faecium E0333]
gi|430832981|ref|ZP_19450994.1| ribosome-recycling factor [Enterococcus faecium E0679]
gi|430838219|ref|ZP_19456167.1| ribosome-recycling factor [Enterococcus faecium E0688]
gi|430841502|ref|ZP_19459421.1| ribosome-recycling factor [Enterococcus faecium E1007]
gi|430843932|ref|ZP_19461830.1| ribosome-recycling factor [Enterococcus faecium E1050]
gi|430845931|ref|ZP_19463796.1| ribosome-recycling factor [Enterococcus faecium E1133]
gi|430849577|ref|ZP_19467350.1| ribosome-recycling factor [Enterococcus faecium E1185]
gi|430851774|ref|ZP_19469509.1| ribosome-recycling factor [Enterococcus faecium E1258]
gi|430854924|ref|ZP_19472635.1| ribosome-recycling factor [Enterococcus faecium E1392]
gi|430858027|ref|ZP_19475656.1| ribosome-recycling factor [Enterococcus faecium E1552]
gi|430860309|ref|ZP_19477913.1| ribosome-recycling factor [Enterococcus faecium E1573]
gi|430865192|ref|ZP_19480950.1| ribosome-recycling factor [Enterococcus faecium E1574]
gi|430949037|ref|ZP_19485956.1| ribosome-recycling factor [Enterococcus faecium E1576]
gi|431005360|ref|ZP_19489006.1| ribosome-recycling factor [Enterococcus faecium E1578]
gi|431033133|ref|ZP_19490979.1| ribosome-recycling factor [Enterococcus faecium E1590]
gi|431073185|ref|ZP_19494729.1| ribosome-recycling factor [Enterococcus faecium E1604]
gi|431108221|ref|ZP_19497372.1| ribosome-recycling factor [Enterococcus faecium E1613]
gi|431146249|ref|ZP_19499146.1| ribosome-recycling factor [Enterococcus faecium E1620]
gi|431229883|ref|ZP_19502086.1| ribosome-recycling factor [Enterococcus faecium E1622]
gi|431252274|ref|ZP_19504332.1| ribosome-recycling factor [Enterococcus faecium E1623]
gi|431292255|ref|ZP_19506803.1| ribosome-recycling factor [Enterococcus faecium E1626]
gi|431370251|ref|ZP_19509950.1| ribosome-recycling factor [Enterococcus faecium E1627]
gi|431412559|ref|ZP_19511994.1| ribosome-recycling factor [Enterococcus faecium E1630]
gi|431497587|ref|ZP_19514741.1| ribosome-recycling factor [Enterococcus faecium E1634]
gi|431542018|ref|ZP_19518247.1| ribosome-recycling factor [Enterococcus faecium E1731]
gi|431586086|ref|ZP_19520601.1| ribosome-recycling factor [Enterococcus faecium E1861]
gi|431651875|ref|ZP_19523804.1| ribosome-recycling factor [Enterococcus faecium E1904]
gi|431737464|ref|ZP_19526418.1| ribosome-recycling factor [Enterococcus faecium E1972]
gi|431739906|ref|ZP_19528825.1| ribosome-recycling factor [Enterococcus faecium E2039]
gi|431743023|ref|ZP_19531904.1| ribosome-recycling factor [Enterococcus faecium E2071]
gi|431746289|ref|ZP_19535123.1| ribosome-recycling factor [Enterococcus faecium E2134]
gi|431750009|ref|ZP_19538736.1| ribosome-recycling factor [Enterococcus faecium E2297]
gi|431752112|ref|ZP_19540797.1| ribosome-recycling factor [Enterococcus faecium E2620]
gi|431754933|ref|ZP_19543593.1| ribosome-recycling factor [Enterococcus faecium E2883]
gi|431756936|ref|ZP_19545568.1| ribosome-recycling factor [Enterococcus faecium E3083]
gi|431759447|ref|ZP_19548061.1| ribosome-recycling factor [Enterococcus faecium E3346]
gi|431762163|ref|ZP_19550725.1| ribosome-recycling factor [Enterococcus faecium E3548]
gi|431764220|ref|ZP_19552763.1| ribosome-recycling factor [Enterococcus faecium E4215]
gi|431767310|ref|ZP_19555764.1| ribosome-recycling factor [Enterococcus faecium E1321]
gi|431770928|ref|ZP_19559322.1| ribosome-recycling factor [Enterococcus faecium E1644]
gi|431772381|ref|ZP_19560722.1| ribosome-recycling factor [Enterococcus faecium E2369]
gi|431775673|ref|ZP_19563945.1| ribosome-recycling factor [Enterococcus faecium E2560]
gi|431778894|ref|ZP_19567099.1| ribosome-recycling factor [Enterococcus faecium E4389]
gi|431781784|ref|ZP_19569927.1| ribosome-recycling factor [Enterococcus faecium E6012]
gi|431785832|ref|ZP_19573854.1| ribosome-recycling factor [Enterococcus faecium E6045]
gi|447912463|ref|YP_007393875.1| Ribosome recycling factor [Enterococcus faecium NRRL B-2354]
gi|227179068|gb|EEI60040.1| ribosome recycling factor [Enterococcus faecium TX1330]
gi|257812761|gb|EEV41519.1| ribosome recycling factor [Enterococcus faecium 1,230,933]
gi|257818826|gb|EEV46154.1| ribosome recycling factor [Enterococcus faecium 1,231,502]
gi|257820173|gb|EEV47321.1| ribosome recycling factor [Enterococcus faecium 1,231,501]
gi|257823130|gb|EEV50062.1| ribosome recycling factor [Enterococcus faecium 1,141,733]
gi|257825630|gb|EEV52256.1| ribosome recycling factor [Enterococcus faecium 1,231,410]
gi|257832206|gb|EEV58627.1| ribosome recycling factor [Enterococcus faecium Com12]
gi|257836143|gb|EEV61217.1| ribosome recycling factor [Enterococcus faecium Com15]
gi|260073953|gb|EEW62277.1| ribosome recycling factor [Enterococcus faecium C68]
gi|260077581|gb|EEW65298.1| ribosome recycling factor [Enterococcus faecium TC 6]
gi|289161974|gb|EFD09841.1| ribosome recycling factor [Enterococcus faecium D344SRF]
gi|291589807|gb|EFF21608.1| ribosome recycling factor [Enterococcus faecium E1071]
gi|291593219|gb|EFF24793.1| ribosome recycling factor [Enterococcus faecium E1636]
gi|291593441|gb|EFF24999.1| ribosome recycling factor [Enterococcus faecium E1679]
gi|291599736|gb|EFF30746.1| ribosome recycling factor [Enterococcus faecium U0317]
gi|291601177|gb|EFF31464.1| ribosome recycling factor [Enterococcus faecium E1039]
gi|291605880|gb|EFF35311.1| ribosome recycling factor [Enterococcus faecium E1162]
gi|291609291|gb|EFF38562.1| ribosome recycling factor [Enterococcus faecium E980]
gi|292643748|gb|EFF61869.1| ribosome recycling factor [Enterococcus faecium PC4.1]
gi|313590319|gb|EFR69164.1| ribosome recycling factor [Enterococcus faecium TX0133a01]
gi|313592872|gb|EFR71717.1| ribosome recycling factor [Enterococcus faecium TX0133B]
gi|313596330|gb|EFR75175.1| ribosome recycling factor [Enterococcus faecium TX0133A]
gi|313599080|gb|EFR77925.1| ribosome recycling factor [Enterococcus faecium TX0133C]
gi|313643139|gb|EFS07719.1| ribosome recycling factor [Enterococcus faecium TX0133a04]
gi|313646053|gb|EFS10633.1| ribosome recycling factor [Enterococcus faecium TX0082]
gi|364089297|gb|EHM31997.1| ribosome recycling factor [Enterococcus faecium E4453]
gi|364090242|gb|EHM32853.1| ribosome recycling factor [Enterococcus faecium E4452]
gi|378938737|gb|AFC63809.1| ribosome recycling factor [Enterococcus faecium Aus0004]
gi|388534115|gb|AFK59307.1| ribosome recycling factor [Enterococcus faecium DO]
gi|402410451|gb|EJV42854.1| ribosome recycling factor [Enterococcus faecium TX1337RF]
gi|402920729|gb|EJX41219.1| ribosome recycling factor [Enterococcus faecium S447]
gi|402922027|gb|EJX42434.1| ribosome recycling factor [Enterococcus faecium R501]
gi|402922334|gb|EJX42728.1| ribosome recycling factor [Enterococcus faecium V689]
gi|402926823|gb|EJX46830.1| ribosome recycling factor [Enterococcus faecium R499]
gi|402934844|gb|EJX54142.1| ribosome recycling factor [Enterococcus faecium R494]
gi|402935433|gb|EJX54682.1| ribosome recycling factor [Enterococcus faecium R496]
gi|402939470|gb|EJX58377.1| ribosome recycling factor [Enterococcus faecium R497]
gi|402941535|gb|EJX60250.1| ribosome recycling factor [Enterococcus faecium R446]
gi|402942441|gb|EJX61028.1| ribosome recycling factor [Enterococcus faecium P1986]
gi|402947207|gb|EJX65430.1| ribosome recycling factor [Enterococcus faecium P1190]
gi|402953142|gb|EJX70880.1| ribosome recycling factor [Enterococcus faecium P1140]
gi|402958490|gb|EJX75801.1| ribosome recycling factor [Enterococcus faecium P1137]
gi|402962864|gb|EJX79771.1| ribosome recycling factor [Enterococcus faecium P1139]
gi|402964486|gb|EJX81261.1| ribosome recycling factor [Enterococcus faecium ERV99]
gi|402968343|gb|EJX84829.1| ribosome recycling factor [Enterococcus faecium P1123]
gi|402970655|gb|EJX86973.1| ribosome recycling factor [Enterococcus faecium ERV69]
gi|402971629|gb|EJX87893.1| ribosome recycling factor [Enterococcus faecium ERV38]
gi|402972369|gb|EJX88575.1| ribosome recycling factor [Enterococcus faecium ERV26]
gi|402982538|gb|EJX97999.1| ribosome recycling factor [Enterococcus faecium ERV168]
gi|402984561|gb|EJX99863.1| ribosome recycling factor [Enterococcus faecium ERV161]
gi|402985436|gb|EJY00645.1| ribosome recycling factor [Enterococcus faecium ERV165]
gi|402991051|gb|EJY05881.1| ribosome recycling factor [Enterococcus faecium ERV102]
gi|402994624|gb|EJY09144.1| ribosome recycling factor [Enterococcus faecium ERV1]
gi|402995288|gb|EJY09759.1| ribosome recycling factor [Enterococcus faecium E422]
gi|402997220|gb|EJY11565.1| ribosome recycling factor [Enterococcus faecium E417]
gi|403002490|gb|EJY16461.1| ribosome recycling factor [Enterococcus faecium C621]
gi|403006232|gb|EJY19894.1| ribosome recycling factor [Enterococcus faecium C1904]
gi|403010482|gb|EJY23858.1| ribosome recycling factor [Enterococcus faecium C497]
gi|403014397|gb|EJY27406.1| ribosome recycling factor [Enterococcus faecium 515]
gi|403016660|gb|EJY29468.1| ribosome recycling factor [Enterococcus faecium 513]
gi|403019977|gb|EJY32544.1| ribosome recycling factor [Enterococcus faecium 514]
gi|403027896|gb|EJY39748.1| ribosome recycling factor [Enterococcus faecium 511]
gi|403027992|gb|EJY39839.1| ribosome recycling factor [Enterococcus faecium 510]
gi|403031400|gb|EJY43009.1| ribosome recycling factor [Enterococcus faecium 509]
gi|403034799|gb|EJY46226.1| ribosome recycling factor [Enterococcus faecium 504]
gi|403035599|gb|EJY46985.1| ribosome recycling factor [Enterococcus faecium 505]
gi|403035872|gb|EJY47252.1| ribosome recycling factor [Enterococcus faecium 506]
gi|403043478|gb|EJY54387.1| ribosome recycling factor [Enterococcus faecium 503]
gi|404453536|gb|EKA00589.1| ribosome recycling factor [Enterococcus sp. GMD4E]
gi|404456756|gb|EKA03387.1| ribosome recycling factor [Enterococcus sp. GMD3E]
gi|404462686|gb|EKA08399.1| ribosome recycling factor [Enterococcus sp. GMD2E]
gi|404469160|gb|EKA13986.1| ribosome recycling factor [Enterococcus sp. GMD1E]
gi|410734415|gb|EKQ76335.1| ribosome recycling factor [Enterococcus sp. GMD5E]
gi|425722955|gb|EKU85846.1| ribosome-recycling factor [Enterococcus durans FB129-CNAB-4]
gi|430440060|gb|ELA50337.1| ribosome-recycling factor [Enterococcus faecium E0045]
gi|430443209|gb|ELA53206.1| ribosome-recycling factor [Enterococcus faecium E0120]
gi|430446062|gb|ELA55761.1| ribosome-recycling factor [Enterococcus faecium E0164]
gi|430482405|gb|ELA59523.1| ribosome-recycling factor [Enterococcus faecium E0333]
gi|430484332|gb|ELA61353.1| ribosome-recycling factor [Enterococcus faecium E0269]
gi|430486436|gb|ELA63272.1| ribosome-recycling factor [Enterococcus faecium E0679]
gi|430491963|gb|ELA68404.1| ribosome-recycling factor [Enterococcus faecium E0688]
gi|430494278|gb|ELA70528.1| ribosome-recycling factor [Enterococcus faecium E1007]
gi|430496522|gb|ELA72581.1| ribosome-recycling factor [Enterococcus faecium E1050]
gi|430537328|gb|ELA77671.1| ribosome-recycling factor [Enterococcus faecium E1185]
gi|430539751|gb|ELA79990.1| ribosome-recycling factor [Enterococcus faecium E1133]
gi|430542356|gb|ELA82464.1| ribosome-recycling factor [Enterococcus faecium E1258]
gi|430545979|gb|ELA85945.1| ribosome-recycling factor [Enterococcus faecium E1552]
gi|430547462|gb|ELA87385.1| ribosome-recycling factor [Enterococcus faecium E1392]
gi|430552746|gb|ELA92474.1| ribosome-recycling factor [Enterococcus faecium E1573]
gi|430553270|gb|ELA92971.1| ribosome-recycling factor [Enterococcus faecium E1574]
gi|430557882|gb|ELA97318.1| ribosome-recycling factor [Enterococcus faecium E1576]
gi|430561393|gb|ELB00661.1| ribosome-recycling factor [Enterococcus faecium E1578]
gi|430564234|gb|ELB03418.1| ribosome-recycling factor [Enterococcus faecium E1590]
gi|430566757|gb|ELB05853.1| ribosome-recycling factor [Enterococcus faecium E1604]
gi|430569345|gb|ELB08349.1| ribosome-recycling factor [Enterococcus faecium E1613]
gi|430573869|gb|ELB12647.1| ribosome-recycling factor [Enterococcus faecium E1622]
gi|430575789|gb|ELB14486.1| ribosome-recycling factor [Enterococcus faecium E1620]
gi|430578700|gb|ELB17252.1| ribosome-recycling factor [Enterococcus faecium E1623]
gi|430582167|gb|ELB20595.1| ribosome-recycling factor [Enterococcus faecium E1626]
gi|430583998|gb|ELB22356.1| ribosome-recycling factor [Enterococcus faecium E1627]
gi|430588522|gb|ELB26714.1| ribosome-recycling factor [Enterococcus faecium E1634]
gi|430589514|gb|ELB27642.1| ribosome-recycling factor [Enterococcus faecium E1630]
gi|430593065|gb|ELB31052.1| ribosome-recycling factor [Enterococcus faecium E1731]
gi|430593264|gb|ELB31250.1| ribosome-recycling factor [Enterococcus faecium E1861]
gi|430599121|gb|ELB36837.1| ribosome-recycling factor [Enterococcus faecium E1972]
gi|430600928|gb|ELB38554.1| ribosome-recycling factor [Enterococcus faecium E1904]
gi|430604033|gb|ELB41533.1| ribosome-recycling factor [Enterococcus faecium E2039]
gi|430607387|gb|ELB44707.1| ribosome-recycling factor [Enterococcus faecium E2071]
gi|430609058|gb|ELB46264.1| ribosome-recycling factor [Enterococcus faecium E2134]
gi|430610482|gb|ELB47626.1| ribosome-recycling factor [Enterococcus faecium E2297]
gi|430614176|gb|ELB51165.1| ribosome-recycling factor [Enterococcus faecium E2620]
gi|430618761|gb|ELB55602.1| ribosome-recycling factor [Enterococcus faecium E2883]
gi|430620790|gb|ELB57592.1| ribosome-recycling factor [Enterococcus faecium E3083]
gi|430624855|gb|ELB61505.1| ribosome-recycling factor [Enterococcus faecium E3548]
gi|430626247|gb|ELB62833.1| ribosome-recycling factor [Enterococcus faecium E3346]
gi|430631114|gb|ELB67444.1| ribosome-recycling factor [Enterococcus faecium E1321]
gi|430631405|gb|ELB67727.1| ribosome-recycling factor [Enterococcus faecium E4215]
gi|430634378|gb|ELB70504.1| ribosome-recycling factor [Enterococcus faecium E1644]
gi|430638069|gb|ELB74050.1| ribosome-recycling factor [Enterococcus faecium E2369]
gi|430642942|gb|ELB78708.1| ribosome-recycling factor [Enterococcus faecium E2560]
gi|430643375|gb|ELB79119.1| ribosome-recycling factor [Enterococcus faecium E4389]
gi|430646703|gb|ELB82169.1| ribosome-recycling factor [Enterococcus faecium E6045]
gi|430648789|gb|ELB84186.1| ribosome-recycling factor [Enterococcus faecium E6012]
gi|445188172|gb|AGE29814.1| Ribosome recycling factor [Enterococcus faecium NRRL B-2354]
Length = 185
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 129/183 (70%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+I + K +M++ ++ +R GR+N ++LD+I V YYG+P L +A I P++
Sbjct: 3 DAIMTEAKEKMKKAAQNLQRELGQIRAGRANASLLDRITVNYYGAPTPLNQMASIQIPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
L+I P+DKS L+ +EKAI++SD+G++P NDG VIRL +PQLT ERRKEL+K V K+AE
Sbjct: 63 RVLMITPFDKSILQDVEKAIMASDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
K+A+RNIRRDA+ Y+K QK ++ED+++ L D+Q LTD +K++D I KEKEL
Sbjct: 123 NAKIAIRNIRRDAIDEYKKQQKNGDITEDDLRGLEKDVQTLTDNSIKEVDKIAADKEKEL 182
Query: 274 LKV 276
L+V
Sbjct: 183 LEV 185
>gi|332296167|ref|YP_004438090.1| ribosome-recycling factor [Thermodesulfobium narugense DSM 14796]
gi|332179270|gb|AEE14959.1| Ribosome-recycling factor [Thermodesulfobium narugense DSM 14796]
Length = 185
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/175 (50%), Positives = 130/175 (74%)
Query: 100 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQ 159
++ RM + +D + F SVRTGR++PA+LD ++V+YYG+ V +K +A ++ D+ +LLI
Sbjct: 9 LRQRMSKAVDNLSKEFASVRTGRASPALLDHVKVDYYGTTVPIKQLANVSQQDARTLLIN 68
Query: 160 PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAV 219
YDK++L++++KAI SDLG+TP DG V+R+ +P LT ERRKEL KVV K AEE +VAV
Sbjct: 69 VYDKNALQAVDKAIRLSDLGLTPQVDGMVLRIVIPTLTQERRKELVKVVKKMAEEARVAV 128
Query: 220 RNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
RNIRRD L+ EK K K++SED++K ++ QK+TD Y+++ID + KEKE+L
Sbjct: 129 RNIRRDELEILEKRAKNKEISEDDLKRFKNEFQKITDSYIQEIDKLLSNKEKEIL 183
>gi|258516352|ref|YP_003192574.1| ribosome recycling factor [Desulfotomaculum acetoxidans DSM 771]
gi|257780057|gb|ACV63951.1| ribosome recycling factor [Desulfotomaculum acetoxidans DSM 771]
Length = 185
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/181 (50%), Positives = 137/181 (75%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I +D + M++T+++V+ +F S+R GR+ P +LDKI V+YYG+P + +A ++ P++
Sbjct: 5 ILEDAEDSMKKTVEVVKKDFASLRAGRATPGLLDKINVDYYGTPTPVNQLANVSVPEARL 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L+IQP+DKS + ++EKAI+ SDLG+TPN+DG VIRL +PQLT ERRK+L KVV K+AEEG
Sbjct: 65 LVIQPWDKSVIPALEKAILKSDLGITPNSDGVVIRLAVPQLTEERRKDLVKVVKKKAEEG 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
+VAVRNIRRDA + QK+ ++ED+ + ++QKLTD+Y+K ID + KEKE+++
Sbjct: 125 RVAVRNIRRDANDLLKSEQKDGNITEDDSRRAQDEVQKLTDKYIKDIDQLMANKEKEIMQ 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|42525110|ref|NP_970490.1| hypothetical protein Bd3784 [Bdellovibrio bacteriovorus HD100]
gi|47116990|sp|P61302.1|RRF_BDEBA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|39577321|emb|CAE81144.1| rrf [Bdellovibrio bacteriovorus HD100]
Length = 186
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/183 (49%), Positives = 132/183 (72%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ ++K+ +A+ME+T++ + VRTGR+ +MLD I V YYG+P L +A I+TPD+
Sbjct: 4 ADVKKNAQAKMEKTLNSLSEELKKVRTGRAQVSMLDGIRVNYYGTPSPLSQVASISTPDA 63
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
S LI P++ + LK IE+AI+ S+LGM P NDG+VIRL +P LT ERRK+L+K V K AE
Sbjct: 64 KSFLIAPWEVAILKDIEQAIIKSELGMAPMNDGKVIRLKVPDLTEERRKDLAKQVKKIAE 123
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
E +VAVR RRDA +KLQK+K +SED K +D+QK+TD+++KK+D + ++KEK +
Sbjct: 124 EARVAVRMARRDANDEVKKLQKDKAVSEDEGKKAEADIQKVTDDFIKKVDQVAEEKEKAI 183
Query: 274 LKV 276
L +
Sbjct: 184 LTI 186
>gi|392394589|ref|YP_006431191.1| ribosome recycling factor [Desulfitobacterium dehalogenans ATCC
51507]
gi|390525667|gb|AFM01398.1| ribosome recycling factor [Desulfitobacterium dehalogenans ATCC
51507]
Length = 185
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/179 (50%), Positives = 130/179 (72%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+ + RM + ++ ++ ++++R GR+NP MLDKI VEYYG+ + +A I+ P+ L
Sbjct: 7 KEAEDRMVKAVEALKREYSTIRAGRANPNMLDKITVEYYGTQTPVNQLANISVPEPRMLA 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+DKSSL IEKAI+ SDLG+ P++DG VIRL +PQLT+ERR E+ K V K+AEE +V
Sbjct: 67 IQPWDKSSLPMIEKAILKSDLGLNPSSDGAVIRLIIPQLTAERRTEIVKTVKKKAEESRV 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
AVRNIRRD +KL+K+ SED VK D+QK+TD+++K+ID I KEKE+++V
Sbjct: 127 AVRNIRRDCNDDLKKLEKDHTASEDEVKRAQDDVQKMTDKFVKEIDRIMGIKEKEIMEV 185
>gi|440780936|ref|ZP_20959407.1| ribosome recycling factor [Clostridium pasteurianum DSM 525]
gi|440221524|gb|ELP60729.1| ribosome recycling factor [Clostridium pasteurianum DSM 525]
Length = 185
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 127/174 (72%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +TI +++ S++ GR+NPAMLD+I+VEYYGS +L +A ++ P++ LLIQPYD
Sbjct: 12 KMNKTISVLKNELASMKAGRANPAMLDRIQVEYYGSSTALNQLANVSAPEARVLLIQPYD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS++K IE+AI+ S+LG+ P+NDG VIRL +P+LT E RK + K V K E+GKVA+R++
Sbjct: 72 KSAIKDIERAILMSNLGLNPSNDGSVIRLVIPELTEETRKNIVKSVKKAGEDGKVAIRSV 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA + L+K+ ++ED VK D+QK TD Y+K ID I +KEK+L+ +
Sbjct: 132 RRDANDKIKALKKDNTITEDEVKKAEDDVQKKTDSYIKNIDEIVDKKEKDLMSI 185
>gi|319786511|ref|YP_004145986.1| ribosome recycling factor [Pseudoxanthomonas suwonensis 11-1]
gi|317465023|gb|ADV26755.1| ribosome recycling factor [Pseudoxanthomonas suwonensis 11-1]
Length = 185
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/181 (48%), Positives = 131/181 (72%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I++D +ARM ++I+ +R N VRTGR++ ++D I V YGS V L +A ++ D+ S
Sbjct: 5 IKQDAQARMAKSIEALRHNLVKVRTGRASTGLVDTIRVSAYGSDVPLSQVAAVSVSDARS 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L+I P+DKS + IEKAI++SDLG+TPN G IRL LP LT ERR++L+KVVA + E+
Sbjct: 65 LVITPWDKSMVGPIEKAILASDLGLTPNTAGTTIRLNLPALTEERRRDLAKVVASEGEDA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVA+RN+RRDA + + L KEK+++ED+V+ D+QK+TD+ +K +D + K KE+EL+
Sbjct: 125 KVAIRNVRRDANQQVKDLLKEKQVTEDDVRRAEDDIQKITDKAIKDVDEVVKAKEQELMA 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|402297393|ref|ZP_10817163.1| ribosome recycling factor [Bacillus alcalophilus ATCC 27647]
gi|401727315|gb|EJT00506.1| ribosome recycling factor [Bacillus alcalophilus ATCC 27647]
Length = 185
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 85/181 (46%), Positives = 133/181 (73%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I K+ + RM + ID + +R GR+NPA+LD++ VEYYG+ L +A I+ P++
Sbjct: 5 ILKNAEGRMTKAIDALNRELAKLRAGRANPALLDRVTVEYYGAETPLNQLATISVPEARL 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L+IQP+DKSS+ +E+AI+ +DLG+TP+NDG +IR+ +P LT ERRKEL K+V + AEE
Sbjct: 65 LVIQPFDKSSINDVERAIMKADLGLTPSNDGTIIRIQIPALTEERRKELVKLVKRSAEEA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVAVRN+RRDA +K QK+ ++ED+++ + ++QKLTD+ ++K+D++ KEKE+++
Sbjct: 125 KVAVRNVRRDANDELKKSQKDGDMTEDDLRRETDEVQKLTDKTIEKVDAVAANKEKEIME 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|374296772|ref|YP_005046963.1| ribosome recycling factor [Clostridium clariflavum DSM 19732]
gi|359826266|gb|AEV69039.1| ribosome recycling factor [Clostridium clariflavum DSM 19732]
Length = 185
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/179 (48%), Positives = 130/179 (72%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K ++ +M++TI ++R VR GR+NPA+LDKI V+YYG P + +A I+ P++ ++
Sbjct: 7 KAIEEKMQKTIKVLRDELAGVRAGRANPAILDKITVDYYGVPTPINQLASISVPEARVIM 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP++ S +K IEK I SD+G+ PN+DG+VIRL P LT ERRKEL+KVV K E+ KV
Sbjct: 67 IQPWEASMVKEIEKEIQKSDIGINPNSDGKVIRLVFPMLTEERRKELTKVVKKYGEDSKV 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+R+IRRDA+ + L+KE +L+ED++K D+Q +TD+Y+ +ID I + KE E+L+V
Sbjct: 127 AIRSIRRDAIDQMKALKKEGQLTEDDLKTAEKDIQNMTDKYISEIDKIVELKEAEILEV 185
>gi|354581543|ref|ZP_09000447.1| ribosome recycling factor [Paenibacillus lactis 154]
gi|353201871|gb|EHB67324.1| ribosome recycling factor [Paenibacillus lactis 154]
Length = 184
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/182 (50%), Positives = 130/182 (71%), Gaps = 1/182 (0%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
S++K+ + RME+ I +R + ++R GR+ PA+LD+I VEYYG+P + +A I+TPDS
Sbjct: 4 SVKKNAEERMEKAILALRRDLATLRAGRAAPALLDRITVEYYGAPTPINQLANISTPDSR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
+L+IQP+DKSSL IEKAI+ SDLG+TP NDG IRL +P LT ERR EL K+ K EE
Sbjct: 64 TLMIQPWDKSSLADIEKAIMKSDLGLTPANDGMQIRLVIPALTEERRSELVKMTKKFGEE 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
KVA+RNIRRDA +K++K +SED + D+QK TD+++ ++D + KEKE++
Sbjct: 124 AKVAIRNIRRDANDDIKKMEK-TDISEDESRRHQEDIQKTTDKFIAEVDKVLVAKEKEIM 182
Query: 275 KV 276
+V
Sbjct: 183 EV 184
>gi|442804820|ref|YP_007372969.1| ribosome-recycling factor Frr [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740670|gb|AGC68359.1| ribosome-recycling factor Frr [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 184
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 130/179 (72%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K + +M++T+ +++ ++R GR+NP +LDK+ VEYYG P + +A IN P++ ++
Sbjct: 6 KHITEKMDKTVAILKEELVNIRAGRANPRILDKVTVEYYGVPTPINQLANINVPEARQIV 65
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D L IEKAI++S+LG+ PNNDG+VIRL P LT ERR EL+K V K E KV
Sbjct: 66 IQPWDPKILSEIEKAIIASNLGLNPNNDGKVIRLIFPPLTEERRVELTKQVKKVGENAKV 125
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+R +RRDAL+ Y+K++K +++ED++K++ D+QK+TD Y++ ID + + K KE+++V
Sbjct: 126 AIRQVRRDALEQYKKMKKNAEITEDDLKEIEEDIQKITDNYIEDIDKLLEAKIKEIMEV 184
>gi|430835687|ref|ZP_19453675.1| ribosome-recycling factor [Enterococcus faecium E0680]
gi|430871449|ref|ZP_19483772.1| ribosome-recycling factor [Enterococcus faecium E1575]
gi|430489224|gb|ELA65853.1| ribosome-recycling factor [Enterococcus faecium E0680]
gi|430557769|gb|ELA97206.1| ribosome-recycling factor [Enterococcus faecium E1575]
Length = 185
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/183 (46%), Positives = 129/183 (70%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+I + K +M++ ++ +R GR+N ++LD+I V YYG+P L +A I P++
Sbjct: 3 DAIMTEAKEKMKKAAQNLQRELGQIRAGRANASLLDRITVNYYGAPTPLNQMASIQIPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
L++ P+DKS L+ +EKAI++SD+G++P NDG VIRL +PQLT ERRKEL+K V K+AE
Sbjct: 63 RVLMVTPFDKSILQDVEKAIMASDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
K+A+RNIRRDA+ Y+K QK ++ED+++ L D+Q LTD +K++D I KEKEL
Sbjct: 123 NAKIAIRNIRRDAIDEYKKQQKNGDITEDDLRGLEKDVQTLTDNSIKEVDKIAADKEKEL 182
Query: 274 LKV 276
L+V
Sbjct: 183 LEV 185
>gi|390454037|ref|ZP_10239565.1| ribosome recycling factor [Paenibacillus peoriae KCTC 3763]
Length = 184
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/182 (47%), Positives = 131/182 (71%), Gaps = 1/182 (0%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
S++K + RM++ I ++ + +S+R GR+ PA+LD+++VEYYG+ + +A +NTPDS
Sbjct: 4 SVKKSAEERMQKAIQALQRDLSSLRAGRATPALLDRVQVEYYGAMTPVNQLANVNTPDSR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
+L+IQP+DKSSL IE+AI SDLG+TP+NDG IRL++P LT ERR EL K+ K EE
Sbjct: 64 TLMIQPWDKSSLADIERAIQKSDLGLTPSNDGNTIRLSIPALTEERRAELVKMTKKNGEE 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
K+A+RNIRRDA +K++K +SED + D+QK TD+++ ++D + KEKE++
Sbjct: 124 AKIAIRNIRRDANDDIKKMEK-SDISEDESRKYQEDIQKTTDKFIAEVDRVLAAKEKEIM 182
Query: 275 KV 276
+V
Sbjct: 183 EV 184
>gi|116075317|ref|ZP_01472577.1| ribosome releasing factor [Synechococcus sp. RS9916]
gi|116067514|gb|EAU73268.1| ribosome releasing factor [Synechococcus sp. RS9916]
Length = 182
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/179 (48%), Positives = 129/179 (72%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
+D++A M+++++ + FN++RTGR+N ++LD+I VEYYG+ LKS+A + TPDS ++
Sbjct: 4 QDLEASMQKSVEATQRMFNTIRTGRANSSLLDRISVEYYGADTPLKSLATLTTPDSQTIQ 63
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D +L SIEKAI S+LG TPNNDG++IR+ +P LT ERRKE K+ +K AEEGKV
Sbjct: 64 IQPFDMGALASIEKAIAMSELGFTPNNDGKLIRINVPPLTEERRKEFCKLASKYAEEGKV 123
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RNIRRDA+ +K +K+ SED D +QK D+Y+ ++ +KE ++LKV
Sbjct: 124 ALRNIRRDAIDKIKKQEKDGDFSEDQSHDEQDSVQKTLDKYIGILEKHLAEKEADILKV 182
>gi|219127660|ref|XP_002184049.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404280|gb|EEC44227.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 225
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 88/181 (48%), Positives = 124/181 (68%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
+ D RM +++D VR N SVRTGR++ +LD+++V+YYG L +A I+ P +
Sbjct: 45 VTDDASDRMAKSVDSVRLNLQSVRTGRASAQILDRVKVDYYGVETPLNQMATISVPSAQQ 104
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L I PYDK+SL +IE AIV SDLG+T NNDG +IR+ +P +T +RRKE+ K+ EEG
Sbjct: 105 LSIDPYDKTSLNNIETAIVESDLGLTTNNDGSIIRINIPSMTEDRRKEMLKLCKSIGEEG 164
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVAVRNIRRD L +K++K + ED +KD +QKLTD+ +K+ID + KEKE++K
Sbjct: 165 KVAVRNIRRDGLDTIKKMEKSSDIGEDEMKDGQDTMQKLTDKNVKEIDEVVGAKEKEVMK 224
Query: 276 V 276
V
Sbjct: 225 V 225
>gi|336113843|ref|YP_004568610.1| ribosome recycling factor [Bacillus coagulans 2-6]
gi|335367273|gb|AEH53224.1| ribosome recycling factor [Bacillus coagulans 2-6]
Length = 186
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 85/176 (48%), Positives = 129/176 (73%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +M + I + S+R GR+N A+LDKI ++YYG+ + +A I+ P++ ++IQP
Sbjct: 11 KDKMAKAIQAFQRELGSIRAGRANAALLDKITIDYYGARTPVNQLASISVPEARLMVIQP 70
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+ L IEKAI+ SDLG+TPNNDG VIRL++P LT ERRKEL K++ K+AEE KVA+R
Sbjct: 71 YDKTVLGEIEKAILKSDLGLTPNNDGSVIRLSIPPLTEERRKELVKLIKKEAEEAKVAIR 130
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N+RRDA +K +K +++ED + + D+QK+TD++++KID + K KE+E+++V
Sbjct: 131 NVRRDANDELKKQEKNGEITEDEHRGFAEDVQKITDQHIQKIDKMTKTKEQEIMEV 186
>gi|229918658|ref|YP_002887304.1| ribosome recycling factor [Exiguobacterium sp. AT1b]
gi|229470087|gb|ACQ71859.1| ribosome recycling factor [Exiguobacterium sp. AT1b]
Length = 186
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 88/179 (49%), Positives = 132/179 (73%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K + +ME+ ++ +F ++RTGR++ ++LD ++V+YYG P L +A INTP++ LL
Sbjct: 8 KTAEEKMEKAHSSLKRDFGTLRTGRASASILDPVQVDYYGVPTPLNQVANINTPEARLLL 67
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+DKS + +EKAI +DLG++P++DG VIRL +P LT ERRKEL K+ K AEE KV
Sbjct: 68 IQPWDKSMVSEVEKAIQKADLGLSPSSDGTVIRLAIPALTEERRKELVKITKKYAEEAKV 127
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
AVRN+RRDA + +KL+K+ +L+ED+++ + D+Q LTD Y+KKID KEKE+++V
Sbjct: 128 AVRNVRRDANENLKKLEKDGELTEDDLRGYADDVQTLTDSYIKKIDESAAIKEKEIMEV 186
>gi|373106056|ref|ZP_09520361.1| ribosome recycling factor [Stomatobaculum longum]
gi|371653303|gb|EHO18703.1| ribosome recycling factor [Stomatobaculum longum]
Length = 187
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 85/179 (47%), Positives = 131/179 (73%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+++ RM +TI ++ F+++R GR+NP +LD+I V+YYG+ L+ + ++ P++ +L
Sbjct: 9 KELEDRMNKTISFMQEEFSAIRAGRANPHVLDRITVDYYGTQTPLQQVGNVSVPEARMIL 68
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+DKS LK IEKAI++SDLG+ P NDG VIRL P+LT ERRK L+K + K+ E KV
Sbjct: 69 IQPWDKSLLKEIEKAILTSDLGINPTNDGSVIRLLFPELTEERRKALTKDIRKKGEAAKV 128
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
AVRNIRRD ++K++K +++ED++ D + LQKLTD+ +++ID + K+KEL+ V
Sbjct: 129 AVRNIRRDGADVFKKMEKANEITEDDLSDANEKLQKLTDKAVERIDKAVEVKDKELMTV 187
>gi|337750015|ref|YP_004644177.1| Frr [Paenibacillus mucilaginosus KNP414]
gi|379722864|ref|YP_005314995.1| Frr [Paenibacillus mucilaginosus 3016]
gi|386725642|ref|YP_006191968.1| ribosome recycling factor [Paenibacillus mucilaginosus K02]
gi|336301204|gb|AEI44307.1| Frr [Paenibacillus mucilaginosus KNP414]
gi|378571536|gb|AFC31846.1| Frr [Paenibacillus mucilaginosus 3016]
gi|384092767|gb|AFH64203.1| ribosome recycling factor [Paenibacillus mucilaginosus K02]
Length = 184
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 88/182 (48%), Positives = 131/182 (71%), Gaps = 1/182 (0%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
SI+K+ + RME+ I ++ S+R GR+ PA+LD+I+VEYYG+ + +A INTPDS
Sbjct: 4 SIKKNAEDRMEKAIGALKKELASLRAGRATPALLDRIQVEYYGAMTPVNQLANINTPDSR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
+L+IQP+DK S+ +IEKAI+ SDLG+TP+NDG IR+ +P LT ERR +L K+ K EE
Sbjct: 64 TLMIQPWDKGSVAAIEKAIMKSDLGLTPSNDGSSIRIVIPALTEERRADLVKMTKKAGEE 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
KVA+RNIRRDA +KL+K +SED + ++QK+TD+++ ++D + KEKE++
Sbjct: 124 AKVAIRNIRRDANDDIKKLEK-NGISEDESRGHQEEIQKMTDKHIAEVDKVLAAKEKEIM 182
Query: 275 KV 276
+V
Sbjct: 183 EV 184
>gi|289434595|ref|YP_003464467.1| hypothetical protein lse_1230 [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|422421972|ref|ZP_16498925.1| ribosome recycling factor [Listeria seeligeri FSL S4-171]
gi|289170839|emb|CBH27381.1| frr [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|313638109|gb|EFS03374.1| ribosome recycling factor [Listeria seeligeri FSL S4-171]
Length = 185
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 90/176 (51%), Positives = 128/176 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +ME+ + ++R GR+N ++LD++ V+YYG+ + +A I+ P++ LLI P
Sbjct: 10 KEKMEKAEQALTRQLGTIRAGRANASLLDRLTVDYYGAATPVNQMASISIPEARMLLITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+ L IEKAI+ SDLG+TPNNDG V+RL++PQLT ERRKEL K V K+AEE KVAVR
Sbjct: 70 YDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRR+A + +KL+K ++ED+++ D+QKLTDE +K ID+I K KE E+L+V
Sbjct: 130 NIRREANEDLKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDNITKDKEAEILEV 185
>gi|255656125|ref|ZP_05401534.1| ribosome recycling factor [Clostridium difficile QCD-23m63]
gi|296450443|ref|ZP_06892199.1| ribosome recycling factor [Clostridium difficile NAP08]
gi|296879434|ref|ZP_06903428.1| ribosome recycling factor [Clostridium difficile NAP07]
gi|296260704|gb|EFH07543.1| ribosome recycling factor [Clostridium difficile NAP08]
gi|296429580|gb|EFH15433.1| ribosome recycling factor [Clostridium difficile NAP07]
Length = 185
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/184 (47%), Positives = 134/184 (72%)
Query: 93 KSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPD 152
K I K ++ +M TID ++ F ++R GR+N MLDKI V+YYG+P + I I+ P+
Sbjct: 2 KLEIHKQLEEKMNGTIDALKFEFGTIRAGRANAQMLDKIRVDYYGTPTPINQIGAISVPE 61
Query: 153 SSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQA 212
L+I P+DKS++ IEKAI +SDLG+ P+NDGEVIRL++P LT ERRKEL+K +K A
Sbjct: 62 PRILMISPWDKSAMHEIEKAIANSDLGLNPSNDGEVIRLSVPALTEERRKELAKKASKAA 121
Query: 213 EEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKE 272
E+ KV +RN RRDA + +K++K +L+ED +K ++QK+TD+++K+ID++ +KEK+
Sbjct: 122 EDFKVRIRNERRDANEKIKKMEKGGELTEDELKKAQDEVQKMTDKFIKEIDTLLSKKEKD 181
Query: 273 LLKV 276
+++V
Sbjct: 182 IMEV 185
>gi|375308258|ref|ZP_09773544.1| ribosome-recycling factor [Paenibacillus sp. Aloe-11]
gi|375079682|gb|EHS57904.1| ribosome-recycling factor [Paenibacillus sp. Aloe-11]
Length = 184
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 86/182 (47%), Positives = 131/182 (71%), Gaps = 1/182 (0%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
S++K + RM++ I ++ + +S+R GR+ PA+LD+++VEYYG+ + +A +NTPDS
Sbjct: 4 SVKKSAEERMQKAIQALQRDLSSLRAGRATPALLDRVQVEYYGAMTPVNQLANVNTPDSR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
+L+IQP+DKSSL IE+AI SDLG+TP+NDG IRL++P LT ERR EL K+ K EE
Sbjct: 64 TLMIQPWDKSSLADIERAIQKSDLGLTPSNDGNTIRLSIPALTEERRTELVKMTKKNGEE 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
K+A+RNIRRDA +K++K +SED + D+QK TD+++ ++D + KEKE++
Sbjct: 124 AKIAIRNIRRDANDDIKKMEK-SDISEDESRKHQEDIQKTTDKFIAEVDRVLAAKEKEIM 182
Query: 275 KV 276
+V
Sbjct: 183 EV 184
>gi|334139070|ref|ZP_08512469.1| ribosome recycling factor [Paenibacillus sp. HGF7]
gi|333603248|gb|EGL14667.1| ribosome recycling factor [Paenibacillus sp. HGF7]
Length = 184
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 90/182 (49%), Positives = 132/182 (72%), Gaps = 1/182 (0%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
SI+K+ + RM + ID ++ + ++R GR+NPA+LDKI+VEYYG+ + +A I+TPDS
Sbjct: 4 SIKKNAEERMSKAIDALKRDLATLRAGRANPALLDKIQVEYYGAMTPVNQLANISTPDSR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
+L+IQP+DKSS+ +IEKAI+ S+LG+TP NDG VIRL +P LT ERR EL K+ K EE
Sbjct: 64 TLIIQPWDKSSMGAIEKAILKSELGLTPANDGTVIRLVIPPLTEERRSELVKLTRKYGEE 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
KVA+RNIRRDA +K Q++ +SED + D+QK TD++ +++ + KEKE++
Sbjct: 124 AKVAIRNIRRDANDDIKK-QEKNGISEDESRRHQDDIQKFTDKFTAEVEKVLTGKEKEIM 182
Query: 275 KV 276
+V
Sbjct: 183 EV 184
>gi|389573225|ref|ZP_10163300.1| ribosome recycling factor [Bacillus sp. M 2-6]
gi|388426922|gb|EIL84732.1| ribosome recycling factor [Bacillus sp. M 2-6]
Length = 185
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/176 (50%), Positives = 125/176 (71%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +ME+ + +VR GR+N ++LDK+ V+YYG+ L IA I P++ L+I P
Sbjct: 10 KEKMEKAVQAYGRELATVRAGRANASLLDKVTVDYYGAQTPLNQIASITVPEARMLIITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+++ IEKAI SDLG+TP +DG VIR+ +P LT ERRKEL KVV K +EE KVAVR
Sbjct: 70 YDKTAIGDIEKAIQKSDLGITPTSDGNVIRIAIPALTEERRKELVKVVRKYSEEAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N+RRDA +KL+K +++ED ++ + D+QKLTDEY+ KID + K KEKE+++V
Sbjct: 130 NVRRDANDELKKLEKNGEITEDELRSSTEDVQKLTDEYVAKIDEVTKDKEKEIMEV 185
>gi|255071027|ref|XP_002507595.1| ribosomal recyclingfactor [Micromonas sp. RCC299]
gi|226522870|gb|ACO68853.1| ribosomal recyclingfactor [Micromonas sp. RCC299]
Length = 170
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 85/173 (49%), Positives = 133/173 (76%), Gaps = 3/173 (1%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
ME+TI+ VR FN+VRTGR++P +L++I V+YYG+ L +IA +TPDS +++IQP+D+
Sbjct: 1 MEKTIETVREKFNTVRTGRASPKILNRINVDYYGTLAPLITIANASTPDSQTIVIQPFDR 60
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
+ + IE+AI+ SDLG+ P+NDG IRL++P LT+ERR+EL+K+V+K EEGKVA+RN+R
Sbjct: 61 TIINDIERAIMLSDLGLNPSNDGACIRLSIPPLTAERRQELAKLVSKLGEEGKVALRNVR 120
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RDA+K+ K++ +SED+VK L + LT ++++K+ + K+KE ++ KV
Sbjct: 121 RDAMKSIGKVE---GVSEDDVKSLEEAIDTLTSDFVRKVGELVKEKEDDIFKV 170
>gi|422418912|ref|ZP_16495867.1| ribosome recycling factor, partial [Listeria seeligeri FSL N1-067]
gi|313633414|gb|EFS00248.1| ribosome recycling factor [Listeria seeligeri FSL N1-067]
Length = 176
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 90/176 (51%), Positives = 128/176 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +ME+ + ++R GR+N ++LD++ V+YYG+ + +A I+ P++ LLI P
Sbjct: 1 KEKMEKAEQALTRQLGTIRAGRANASLLDRLTVDYYGAATPVNQMASISIPEARMLLITP 60
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+ L IEKAI+ SDLG+TPNNDG V+RL++PQLT ERRKEL K V K+AEE KVAVR
Sbjct: 61 YDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVR 120
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRR+A + +KL+K ++ED+++ D+QKLTDE +K ID+I K KE E+L+V
Sbjct: 121 NIRREANEDLKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDNITKDKEAEILEV 176
>gi|219669723|ref|YP_002460158.1| ribosome recycling factor [Desulfitobacterium hafniense DCB-2]
gi|254809508|sp|B8FRG2.1|RRF_DESHD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|219539983|gb|ACL21722.1| ribosome recycling factor [Desulfitobacterium hafniense DCB-2]
Length = 185
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 90/179 (50%), Positives = 130/179 (72%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+ + RM + ++ ++ + ++R GR+NP MLDKI VEYYG+ + +A I+ P+ L
Sbjct: 7 KEAEDRMVKAVEALKREYATIRAGRANPNMLDKITVEYYGTQTPVNQLANISVPEPRMLT 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+DKSSL IEKAI+ SDLG+ P++DG VIRL +PQLT+ERR E+ K V K+AE+ +V
Sbjct: 67 IQPWDKSSLPMIEKAILKSDLGLNPSSDGTVIRLLIPQLTAERRTEIVKTVKKKAEDSRV 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
AVRNIRRD+ +KL+K+ SED VK D+QK+TD+++K+ID I KEKE+++V
Sbjct: 127 AVRNIRRDSNDELKKLEKDHTASEDEVKRAQDDVQKMTDKFVKEIDRIMGTKEKEIMEV 185
>gi|171780175|ref|ZP_02921079.1| hypothetical protein STRINF_01963 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|379705770|ref|YP_005204229.1| ribosome recycling factor [Streptococcus infantarius subsp.
infantarius CJ18]
gi|171281523|gb|EDT46958.1| ribosome recycling factor [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|374682469|gb|AEZ62758.1| ribosome recycling factor [Streptococcus infantarius subsp.
infantarius CJ18]
Length = 185
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/181 (52%), Positives = 127/181 (70%), Gaps = 1/181 (0%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
IEK K R E++ + F ++R GR+N ++LD+I+VEYYG+ L +A I P++
Sbjct: 6 IEK-AKERFEQSHSSLAREFAAIRAGRANASLLDRIQVEYYGAMTPLNQLASITVPEARV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LLI P+DKSSLK IE AI +SDLG+TP NDG VIRL +P LT E RKEL+K V K E
Sbjct: 65 LLISPFDKSSLKDIEHAINASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVA+RNIRRDA+ +K +K K+++ED +K L D+QK TDE +K ID++ KEKELL+
Sbjct: 125 KVAIRNIRRDAMDEAKKQEKAKEITEDELKVLEKDIQKATDEAVKHIDAMTANKEKELLE 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|430750280|ref|YP_007213188.1| ribosome recycling factor [Thermobacillus composti KWC4]
gi|430734245|gb|AGA58190.1| ribosome recycling factor [Thermobacillus composti KWC4]
Length = 184
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 90/182 (49%), Positives = 131/182 (71%), Gaps = 1/182 (0%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
+I+K+ + RM++ I +R + ++R GR+ PAMLD+I V+YYG+P + +A INTPD+
Sbjct: 4 TIKKNAEERMDKAIAALRRDLATLRAGRATPAMLDRILVDYYGAPTPVNQLATINTPDAR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
+L+IQP+DKS L IEKAI+ S+LG+TP NDG +IRL++P LT ERR +L K K EE
Sbjct: 64 TLVIQPWDKSVLGEIEKAIMKSELGLTPANDGSIIRLSVPPLTEERRTDLVKQTKKFGEE 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
KVA+RN+RRDA +KL+K +LSED + D+QKLTD ++ ++D I KEKE++
Sbjct: 124 AKVAIRNVRRDANDDIKKLEK-GELSEDESRRHQEDIQKLTDRFIAEVDRIIAAKEKEIM 182
Query: 275 KV 276
+V
Sbjct: 183 EV 184
>gi|357235149|ref|ZP_09122492.1| ribosome recycling factor [Streptococcus criceti HS-6]
gi|356883131|gb|EHI73331.1| ribosome recycling factor [Streptococcus criceti HS-6]
Length = 185
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 87/162 (53%), Positives = 120/162 (74%)
Query: 115 FNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIV 174
F+++R GR+N ++LD+IEVEYYG+P L +A I P++ LLI P+DK+S+K IE+AI
Sbjct: 24 FSAIRAGRANASLLDRIEVEYYGAPTPLNQLASITVPEARVLLISPFDKNSIKDIERAIN 83
Query: 175 SSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQ 234
SDLG+ P NDG VIRL +P LT E RKEL+K V K E K+A+RNIRRDA+ +K +
Sbjct: 84 ESDLGINPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDEAKKQE 143
Query: 235 KEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
K K+++ED +K L D+QK TD+ +KK+DS+ +KEKELL V
Sbjct: 144 KAKEITEDELKSLEKDIQKATDDAVKKVDSMTNEKEKELLTV 185
>gi|424780653|ref|ZP_18207526.1| Ribosome recycling factor [Catellicoccus marimammalium M35/04/3]
gi|422843055|gb|EKU27502.1| Ribosome recycling factor [Catellicoccus marimammalium M35/04/3]
Length = 185
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 132/174 (75%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+ME++ +R + +R GR+N ++LD+++VEYYG P + +AQI+ P++ ++I P+D
Sbjct: 12 KMEKSEQALRRELSQIRAGRANASLLDRVQVEYYGVPTPVNQMAQISIPEARVIMITPFD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K++LK IE+ I+ SDLG+ P NDG VIRL +PQLT ERRKEL+K V K AE+GKV++R+I
Sbjct: 72 KTTLKDIERGILESDLGINPTNDGNVIRLVIPQLTEERRKELAKEVKKIAEQGKVSIRHI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD + A +K++K +++ED+++ D+Q+LTD+ +K +D+I +KE+ELL++
Sbjct: 132 RRDVMNALKKMEKASEITEDDLRGYEKDVQELTDKSIKDMDAIAAEKEQELLEI 185
>gi|374336411|ref|YP_005093098.1| ribosome recycling factor [Oceanimonas sp. GK1]
gi|372986098|gb|AEY02348.1| ribosome recycling factor [Oceanimonas sp. GK1]
Length = 185
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 86/183 (46%), Positives = 135/183 (73%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I+ D K RME++++ ++T N VRTGR++P++LD I V+YYG+ L +A I T DS
Sbjct: 3 NDIKTDAKTRMEKSVEALKTQMNKVRTGRAHPSLLDSIHVDYYGASTPLNQLANITTEDS 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L + +D+S ++++EKAI++SDLG+ P++ G +IR+ LP LT ERRK+L KVV +AE
Sbjct: 63 RTLAVTVFDRSMIQAVEKAIMTSDLGLNPSSAGAMIRIPLPPLTEERRKDLIKVVRNEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+G+VA+RNIRRDA + + L KEK++SED+ + D+QKLTD ++K++D KEKEL
Sbjct: 123 QGRVAIRNIRRDANSSLKALLKEKEISEDDDRRAQDDIQKLTDLFIKQVDDALAAKEKEL 182
Query: 274 LKV 276
+++
Sbjct: 183 MEI 185
>gi|410460706|ref|ZP_11314380.1| ribosome recycling factor [Bacillus azotoformans LMG 9581]
gi|409926760|gb|EKN63914.1| ribosome recycling factor [Bacillus azotoformans LMG 9581]
Length = 185
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 84/182 (46%), Positives = 131/182 (71%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
++ K+ K +M + I + +VR GR+NP++LD++ V YYG+P L ++ I P++
Sbjct: 4 TVIKNTKEKMNKAIQAFKRELATVRAGRANPSLLDRVSVNYYGAPTPLNQLSSITVPEAR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
L+IQPYDKS L IEKAI+ +DLG+ P+NDG +IR+ +P LT ERRK L+K V AE+
Sbjct: 64 LLVIQPYDKSVLNDIEKAILKADLGLNPSNDGTIIRIAIPALTEERRKSLAKDVKAMAED 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
K+A+RN+RRDA +KL+K+ +++ED ++ S D+QK TD ++K+ID+I K+KEKE++
Sbjct: 124 AKIAIRNVRRDANDDLKKLEKDGQITEDELRSFSDDVQKETDNHVKEIDNITKEKEKEIM 183
Query: 275 KV 276
+V
Sbjct: 184 EV 185
>gi|375090663|ref|ZP_09736976.1| ribosome recycling factor [Facklamia languida CCUG 37842]
gi|374565084|gb|EHR36360.1| ribosome recycling factor [Facklamia languida CCUG 37842]
Length = 186
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 86/176 (48%), Positives = 128/176 (72%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
KD K RM+++I+ + ++R G +N ++LD++ VEYYG+ L +A I P+ L+
Sbjct: 8 KDTKGRMQKSIEAFQRELGTIRAGVANASILDRVSVEYYGAETPLNQLASITIPEPRMLM 67
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I PYDKSSL++IEK I+ SD+G+TP NDGEVIRL +P LT ERR++L KVV K+ E K+
Sbjct: 68 ISPYDKSSLQNIEKGILMSDVGITPTNDGEVIRLVIPALTKERREDLVKVVGKEQENAKI 127
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
A+RNIRRDA+ + +KL+K K+++ED+VK D+Q+LTD+ K+ID + KE+E+
Sbjct: 128 AIRNIRRDAIDSVKKLEKAKEITEDDVKRYEKDIQQLTDDSTKEIDRLTSLKEEEI 183
>gi|404329110|ref|ZP_10969558.1| ribosome recycling factor [Sporolactobacillus vineae DSM 21990 =
SL153]
Length = 186
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 86/184 (46%), Positives = 134/184 (72%)
Query: 93 KSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPD 152
+ S+ K+ + RM++++ + ++R GR+NP++L+K+ VEYYG+ LK IA + P+
Sbjct: 3 QDSVLKEARERMDKSVKSFQRELVTIRAGRANPSLLNKVTVEYYGAETPLKQIASVTAPE 62
Query: 153 SSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQA 212
+ LLIQPYD+++L +IE+ I+ SDLG+TP NDG VIR+ +P LT ERR EL KVV K A
Sbjct: 63 ARLLLIQPYDRNALANIERGILKSDLGITPTNDGTVIRIAIPPLTEERRAELVKVVHKFA 122
Query: 213 EEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKE 272
EE KVAVRNIRR+A + +K++K +L++D+V++ + QKLTD +K++D + K KEKE
Sbjct: 123 EEAKVAVRNIRREANEQIKKMEKNNELTKDDVRESEEETQKLTDTTIKRVDQLTKDKEKE 182
Query: 273 LLKV 276
++ +
Sbjct: 183 MMDI 186
>gi|289450226|ref|YP_003475249.1| ribosome recycling factor [Clostridiales genomosp. BVAB3 str.
UPII9-5]
gi|289184773|gb|ADC91198.1| ribosome recycling factor [Clostridiales genomosp. BVAB3 str.
UPII9-5]
Length = 187
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 124/174 (71%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM ++ID ++ N NSVR GR+NP +LD+I + YYG+ L +A I P+ + I P+D
Sbjct: 14 RMNKSIDNLKENLNSVRAGRANPHILDRITISYYGAETPLNQVANIQVPEPRMITISPWD 73
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
SSL IEKA++ SD+G+ PNNDG++IRL P LT ERRK+L+K VAK EE K+ VRN+
Sbjct: 74 PSSLSLIEKAVLMSDIGINPNNDGKMIRLVFPTLTEERRKDLAKTVAKYGEETKIVVRNV 133
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RR+A+ ++ L K K+LS+D+++ + D+QK+T+ + KID I KEK+L+++
Sbjct: 134 RREAIDKFKALHKSKELSDDDIRTVEDDVQKITNRFTAKIDEIVAAKEKDLMEI 187
>gi|407977560|ref|ZP_11158397.1| ribosome recycling factor [Bacillus sp. HYC-10]
gi|407415813|gb|EKF37394.1| ribosome recycling factor [Bacillus sp. HYC-10]
Length = 185
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 89/176 (50%), Positives = 125/176 (71%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +ME+ + +VR GR+N ++LDK+ V+YYG+ L IA I P++ L+I P
Sbjct: 10 KEKMEKAVQAYGRELATVRAGRANASLLDKVTVDYYGAQTPLNQIASITVPEARMLIITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+++ IEKAI SDLG+TP +DG VIR+ +P LT ERRKEL KVV K +EE KVAVR
Sbjct: 70 YDKTAIGDIEKAIQKSDLGITPTSDGNVIRIAIPALTEERRKELVKVVRKYSEEAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N+RRDA +KL+K +++ED ++ + D+QKLTDEY+ KID + K KEKE+++V
Sbjct: 130 NVRRDANDDLKKLEKNGEITEDELRSSTEDVQKLTDEYVAKIDEVTKDKEKEIMEV 185
>gi|400289788|ref|ZP_10791815.1| ribosome recycling factor [Streptococcus ratti FA-1 = DSM 20564]
gi|399920579|gb|EJN93396.1| ribosome recycling factor [Streptococcus ratti FA-1 = DSM 20564]
Length = 185
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 91/181 (50%), Positives = 127/181 (70%), Gaps = 1/181 (0%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
IEK K R E++ + F S+R GR+N ++LD+IEVEYYG+P L +A I P++
Sbjct: 6 IEK-TKERFEQSHQSLAREFGSIRAGRANASLLDRIEVEYYGAPTPLNQLASITVPEARV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LL+ P+DKSSLK IE AI +SD+G+ P NDG VIRL +P LT E R++L+K V K E
Sbjct: 65 LLVSPFDKSSLKDIEHAINASDIGINPANDGSVIRLVIPALTEETRRDLAKEVKKVGENA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
K+A+RNIRRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKELL+
Sbjct: 125 KIAIRNIRRDAMDEAKKQEKAKEITEDELKSLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|315648104|ref|ZP_07901205.1| ribosome recycling factor [Paenibacillus vortex V453]
gi|315276750|gb|EFU40093.1| ribosome recycling factor [Paenibacillus vortex V453]
Length = 184
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 91/182 (50%), Positives = 130/182 (71%), Gaps = 1/182 (0%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
S++K+ + RME+ I ++ + ++R GR+ PA+LD+I VEYYG+P L +A I+TPDS
Sbjct: 4 SVKKNAEERMEKAILSLKRDLATLRAGRAAPALLDRITVEYYGAPTPLNQLANISTPDSR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
+L+IQP+DKSSL IEKAI+ SD+G+TP NDG IRL +P LT ERR EL K+ K EE
Sbjct: 64 TLMIQPWDKSSLADIEKAIMKSDIGLTPANDGNQIRLVVPALTEERRTELVKMTKKFGEE 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
KVA+RNIRRDA +KL+K +SED + D+QK TD+++ ++D + KEKE++
Sbjct: 124 AKVAIRNIRRDANDDIKKLEK-TDISEDESRRHQEDIQKATDKFIAEVDKVLVAKEKEIM 182
Query: 275 KV 276
+V
Sbjct: 183 EV 184
>gi|312879901|ref|ZP_07739701.1| ribosome recycling factor [Aminomonas paucivorans DSM 12260]
gi|310783192|gb|EFQ23590.1| ribosome recycling factor [Aminomonas paucivorans DSM 12260]
Length = 185
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 135/177 (76%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
KD+K R E++I+ ++T +RTGR++PA++++I+V+Y+G+ LK +A +N P+S ++
Sbjct: 7 KDMKHRTEKSIEHLKTTLQGIRTGRAHPALVEEIKVDYFGTLTPLKQMAMVNIPESRQIV 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I P+DK++LK+IEKAI +S LG+ P DGE IRLTLP+LT ERR ELSK+V K +EE KV
Sbjct: 67 IAPWDKTALKAIEKAIQASSLGVNPRIDGESIRLTLPELTRERRVELSKLVNKYSEEAKV 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
A+RNIRR+ L+A +K++K+ +SED +K L ++Q+ TDE +K++ +K+KE+L
Sbjct: 127 AIRNIRREVLEALKKMEKDGTISEDELKKLQKEVQEHTDEATRKVEQATAEKDKEIL 183
>gi|426405632|ref|YP_007024603.1| hypothetical protein Bdt_3662 [Bdellovibrio bacteriovorus str.
Tiberius]
gi|425862300|gb|AFY03336.1| hypothetical protein Bdt_3662 [Bdellovibrio bacteriovorus str.
Tiberius]
Length = 186
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 90/183 (49%), Positives = 130/183 (71%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ ++K+ +A+ME+T++ + VRTGR+ +MLD I V YYG+P L +A I+TPD+
Sbjct: 4 ADVKKNAQAKMEKTLNSLSEELKKVRTGRAQVSMLDNIRVNYYGTPSPLSQVASISTPDA 63
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
S LI P++ + LK IE+AI+ S+LGM P NDG+VIRL +P LT ERRK+L+K V K AE
Sbjct: 64 KSFLIAPWEVAILKDIEQAIIKSELGMAPMNDGKVIRLKVPDLTEERRKDLAKQVKKIAE 123
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
E +VAVR RRDA +KLQK+K +SED K +D+QK TD+++KK+D + +KEK +
Sbjct: 124 EARVAVRMARRDANDEVKKLQKDKAVSEDEGKKAEADIQKATDDFIKKVDQVADEKEKSI 183
Query: 274 LKV 276
L +
Sbjct: 184 LTI 186
>gi|415886602|ref|ZP_11548382.1| ribosome recycling factor [Bacillus methanolicus MGA3]
gi|387587289|gb|EIJ79612.1| ribosome recycling factor [Bacillus methanolicus MGA3]
Length = 185
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 89/176 (50%), Positives = 127/176 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +M + I S+R GR++ ++LD++ V+YYG P + +A I+ P+ L+IQP
Sbjct: 10 KEKMTKAIQAYTREIASIRAGRASASLLDRVTVDYYGVPTPVNQLAGISVPEPRLLVIQP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDKS + IEKAI+ SDLG+ P +DG +IR+ +PQLT ERRKEL KVV K++EE KVA+R
Sbjct: 70 YDKSIVGEIEKAILKSDLGLNPTSDGSLIRIAIPQLTEERRKELVKVVKKESEEAKVAIR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRRDA +KL+K +++ED+++ S D+QKLTDE++ KID I K KEKE+L+V
Sbjct: 130 NIRRDANDDLKKLEKAGEITEDDLRGYSDDIQKLTDEHINKIDQITKDKEKEILEV 185
>gi|408410952|ref|ZP_11182143.1| Ribosome-recycling factor [Lactobacillus sp. 66c]
gi|409349360|ref|ZP_11232844.1| Ribosome-recycling factor [Lactobacillus equicursoris CIP 110162]
gi|407874873|emb|CCK83949.1| Ribosome-recycling factor [Lactobacillus sp. 66c]
gi|407878230|emb|CCK84902.1| Ribosome-recycling factor [Lactobacillus equicursoris CIP 110162]
Length = 185
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 90/178 (50%), Positives = 129/178 (72%), Gaps = 1/178 (0%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
IEK K+ M ++ID+ ++N +VR G +N ++LD++ VEYYG P L +A + P+
Sbjct: 6 IEK-AKSNMAKSIDVYQSNLATVRAGVANASLLDRVMVEYYGVPTPLTQMAGVTIPEPRV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L+I PYDKSSL +IE AI++SDLG+TP NDG VIRL +PQLT ERR+E++K V K AEE
Sbjct: 65 LMITPYDKSSLNNIEHAILASDLGLTPANDGNVIRLVIPQLTGERRQEIAKEVGKLAEEA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
K+AVRN+R++A+KA +K +K+ L+ED + L D+QK+TD+ KKID + K KE+
Sbjct: 125 KIAVRNVRQEAMKALKKSEKDGDLTEDEERRLEKDVQKVTDDATKKIDQMADNKRKEI 182
>gi|347750466|ref|YP_004858031.1| ribosome recycling factor [Bacillus coagulans 36D1]
gi|347582984|gb|AEO99250.1| ribosome recycling factor [Bacillus coagulans 36D1]
Length = 186
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 129/176 (73%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +M + I + S+R GR+N A+LDKI ++YYG+ + +A I+ P++ ++IQP
Sbjct: 11 KDKMAKAIQAFQRELGSIRAGRANAALLDKITIDYYGARTPVNQLASISVPEARLMVIQP 70
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+ L IE+AI+ SDLG+TPNNDG VIRL++P LT ERRKEL K++ K+AEE KVA+R
Sbjct: 71 YDKTVLGEIERAILKSDLGLTPNNDGSVIRLSIPPLTEERRKELVKLIKKEAEEAKVAIR 130
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N+RRDA +K +K +++ED + + D+QK+TD++++KID + K KE+E+++V
Sbjct: 131 NVRRDANDELKKQEKNGEITEDEHRGFAEDVQKITDQHIQKIDKMTKTKEQEIMEV 186
>gi|335038956|ref|ZP_08532150.1| Ribosome-recycling factor [Caldalkalibacillus thermarum TA2.A1]
gi|334181155|gb|EGL83726.1| Ribosome-recycling factor [Caldalkalibacillus thermarum TA2.A1]
Length = 185
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 84/179 (46%), Positives = 132/179 (73%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
++ + RM++ ++ ++T S+R GR+ PA+LDK+ V+YYG+ + +A I+ P+ L
Sbjct: 7 QNARERMDKAVNQLKTELASLRAGRATPALLDKVYVDYYGTQTPVNQLANISAPEPRLLT 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+DKS+L +IEKAI+ S+LG+TPNNDG +IR+T+P LT ERR+EL K+V K E+ KV
Sbjct: 67 IQPWDKSALDAIEKAILKSELGLTPNNDGNIIRITIPALTEERRQELVKMVKKYGEDAKV 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RNIRRDA ++ +K++KE +SED + +QK TDE++ ++D I +KEKE+++V
Sbjct: 127 AIRNIRRDANESIKKIEKEGGISEDESRRYQDTVQKATDEHIAQVDQIIAKKEKEIMEV 185
>gi|431794501|ref|YP_007221406.1| ribosome recycling factor [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430784727|gb|AGA70010.1| ribosome recycling factor [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 185
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 89/183 (48%), Positives = 132/183 (72%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S + K+ + RM + + ++ + ++R GR+NP MLD+I VEYYG+ + +A I+ P+
Sbjct: 3 SDVLKEAEDRMVKAGESLKREYTTIRAGRANPNMLDRISVEYYGTQTPVNQLANISVPEP 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
L+IQP+DK+SL IEKAI+ SDLG+ P++DG VIRL +PQLT+ERR E+ K V K+AE
Sbjct: 63 RILVIQPWDKTSLPMIEKAILKSDLGLNPSSDGTVIRLIIPQLTAERRTEIVKTVKKKAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
E +VAVRNIRRD + +K++K+ SED VK D+QK+TD+++K+ID I KEKE+
Sbjct: 123 EARVAVRNIRRDGNDSLKKVEKDHAASEDEVKRAQDDVQKMTDKHIKEIDRIMDAKEKEI 182
Query: 274 LKV 276
++V
Sbjct: 183 MEV 185
>gi|383753427|ref|YP_005432330.1| putative ribosome-recycling factor [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381365479|dbj|BAL82307.1| putative ribosome-recycling factor [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 185
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 126/174 (72%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM+++ID ++ F S+R GR+ P++LDK+ V+YYG+P + IA++ P+ ++IQPY+
Sbjct: 12 RMQKSIDALKREFGSLRAGRATPSLLDKVMVDYYGTPTPVNQIAKVAVPEPRMIMIQPYE 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS L +E AI+ SDLG++PN+DG IRL +P LT ERR+EL K V K+AEE KVA+RNI
Sbjct: 72 KSMLHEVEVAIMKSDLGLSPNSDGTAIRLAIPALTQERRQELVKTVNKKAEEAKVAIRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD A +KL+K K+++ED K +QKL D+Y+K +D+ KEKE+++V
Sbjct: 132 RRDGNDAIKKLEKGKEITEDESKKAQESMQKLADKYVKVVDTARAGKEKEVMEV 185
>gi|365924994|ref|ZP_09447757.1| ribosome recycling factor [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|420266298|ref|ZP_14768780.1| ribosome recycling factor [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|394425794|gb|EJE98711.1| ribosome recycling factor [Lactobacillus mali KCTC 3596 = DSM
20444]
Length = 187
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 90/181 (49%), Positives = 129/181 (71%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I K + +M++ + ++ ++R GR+N ++L++I V YYG+P L IAQI+ P++
Sbjct: 7 ILKSAQEKMKKAQEALQRELGNIRAGRANASLLNRIMVVYYGAPTPLNQIAQISIPEARV 66
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L++ PYDKSSLK IE AI++SDLG++P NDG IRL +PQLT ERRKE++K V +AE+
Sbjct: 67 LMVTPYDKSSLKDIEHAILASDLGISPANDGSAIRLVIPQLTEERRKEIAKEVKAEAEKA 126
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVAVRNIRRDA+ ++K QK+ L+ED++ +L QKLTD +K ID I KEKE+L
Sbjct: 127 KVAVRNIRRDAIDDFKKAQKKGDLTEDDLHNLEEQAQKLTDSSVKSIDDIQADKEKEILD 186
Query: 276 V 276
V
Sbjct: 187 V 187
>gi|310641584|ref|YP_003946342.1| ribosome-recycling factor [Paenibacillus polymyxa SC2]
gi|309246534|gb|ADO56101.1| Ribosome-recycling factor [Paenibacillus polymyxa SC2]
Length = 184
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 86/182 (47%), Positives = 131/182 (71%), Gaps = 1/182 (0%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
S++K + RM++ I ++ + +S+R GR+ PA+LD+++VEYYG+ + +A INTPDS
Sbjct: 4 SVKKSAEERMQKAIQALQRDLSSLRAGRATPALLDRVQVEYYGAMTPVNQLANINTPDSR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
+L+IQP+DKSSL IE+AI SDLG+TP+NDG IRL++P LT ERR +L K+ K EE
Sbjct: 64 TLMIQPWDKSSLADIERAIQKSDLGLTPSNDGNTIRLSIPALTEERRTDLVKLTKKSGEE 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
K+A+RNIRRDA +K++K +SED + D+QK TD+++ ++D + KEKE++
Sbjct: 124 AKIAIRNIRRDANDDIKKMEK-SDISEDESRKHQEDIQKTTDKFIAEVDKVLAAKEKEIM 182
Query: 275 KV 276
+V
Sbjct: 183 EV 184
>gi|126654121|ref|ZP_01725939.1| Frr [Bacillus sp. B14905]
gi|126589401|gb|EAZ83551.1| Frr [Bacillus sp. B14905]
Length = 185
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 85/176 (48%), Positives = 128/176 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +M +TI +S+R GR+N ++LD+I V+YYG+P + +A ++ P++ L+I P
Sbjct: 10 KDKMNKTIAAFTRELSSIRAGRANASLLDRIMVDYYGAPTPINQLAGVSVPEARLLVITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+ L IEKAI+ SD+G+TP NDG +IRL +P LT ERRK+L K V K+AE+ K+AVR
Sbjct: 70 YDKTILGEIEKAIMKSDIGITPTNDGSIIRLMIPALTEERRKDLVKQVKKEAEDAKIAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N+RRDA +KL+K +++ED+++ D+QKLTDE++ K+D + K KEKE+L+V
Sbjct: 130 NVRRDANDDLKKLEKAGEITEDDLRGYGDDIQKLTDEFIVKVDQVTKDKEKEILEV 185
>gi|398814384|ref|ZP_10573065.1| ribosome recycling factor [Brevibacillus sp. BC25]
gi|398036653|gb|EJL29862.1| ribosome recycling factor [Brevibacillus sp. BC25]
Length = 185
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 85/182 (46%), Positives = 132/182 (72%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
S+ KD++ RM + I+ ++ + +S+R GR+NPAMLD++ V+YYG+P + +A I+ P+
Sbjct: 4 SVLKDMEDRMNKAINALKKDMSSLRAGRANPAMLDRVTVDYYGTPTPISQLANISVPEPR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
L IQP+DK++LK I++A+ SDLG++P+NDG +IRL +P LT ERRKEL K+ K EE
Sbjct: 64 MLTIQPWDKTALKEIDRALQQSDLGISPSNDGVIIRLMIPPLTEERRKELVKLAGKGGEE 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
KVA+RNIRRDA +KL+K +SED+ + +QK TD+++ ++D + K KEK++L
Sbjct: 124 AKVAIRNIRRDANDEIKKLEKAATISEDDSRRHQETIQKTTDKFIAEVDKVVKDKEKDIL 183
Query: 275 KV 276
+V
Sbjct: 184 EV 185
>gi|365840022|ref|ZP_09381236.1| ribosome recycling factor [Anaeroglobus geminatus F0357]
gi|364562761|gb|EHM40593.1| ribosome recycling factor [Anaeroglobus geminatus F0357]
Length = 186
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 86/176 (48%), Positives = 131/176 (74%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
+ + ++TI+ R N S+RTGR++ ++LD++ V+YYG+P + +A I+ P+ L I P
Sbjct: 11 EVKTDKTIETFRRNLASIRTGRASTSLLDRVTVDYYGTPTPVNQVANISAPEPRLLTISP 70
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
+D++ L IEKA++ SDLG+ PNNDG +IRL +PQLT ERRKELSK V+K+AEE KVAVR
Sbjct: 71 WDRTMLGEIEKAVLKSDLGLNPNNDGTIIRLEIPQLTEERRKELSKKVSKEAEEAKVAVR 130
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRRD A +K++K+K+++ED+ K+ +QK+TD +K ID I +KE+E+++V
Sbjct: 131 NIRRDNNDAVKKMEKKKEITEDDSKEAQMKIQKITDAKIKSIDEIKDKKEREVMEV 186
>gi|308068689|ref|YP_003870294.1| ribosome recycling factor (ribosome releasing factor)
[Paenibacillus polymyxa E681]
gi|305857968|gb|ADM69756.1| Ribosome recycling factor (Ribosome releasing factor)
[Paenibacillus polymyxa E681]
Length = 184
Score = 183 bits (465), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 86/182 (47%), Positives = 130/182 (71%), Gaps = 1/182 (0%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
S++K + RM++ I ++ + S+R GR+ PA+LD+++VEYYG+ + +A +NTPDS
Sbjct: 4 SVKKSAEERMQKAIQALQRDLASLRAGRATPALLDRVQVEYYGAMTPVNQLANVNTPDSR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
+L+IQP+DKSSL IE+AI SDLG+TP+NDG IRL++P LT ERR +L K+ K EE
Sbjct: 64 TLMIQPWDKSSLADIERAIQKSDLGLTPSNDGNTIRLSIPALTEERRTDLVKLTKKNGEE 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
K+A+RNIRRDA +KL+K +SED + D+QK TD+++ ++D + KEKE++
Sbjct: 124 AKIAIRNIRRDANDDIKKLEK-SDISEDESRKHQEDIQKTTDKFIAEVDKVLAAKEKEIM 182
Query: 275 KV 276
+V
Sbjct: 183 EV 184
>gi|138894772|ref|YP_001125225.1| ribosome recycling factor [Geobacillus thermodenitrificans NG80-2]
gi|196247605|ref|ZP_03146307.1| ribosome recycling factor [Geobacillus sp. G11MC16]
gi|166230789|sp|A4IMC6.1|RRF_GEOTN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|134266285|gb|ABO66480.1| Ribosome recycling factor [Geobacillus thermodenitrificans NG80-2]
gi|196212389|gb|EDY07146.1| ribosome recycling factor [Geobacillus sp. G11MC16]
Length = 185
Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 86/176 (48%), Positives = 130/176 (73%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +M++ + +VR GR+N +L+K+ V+YYG + +A I+ P++ L+IQP
Sbjct: 10 KEKMDKAVQAFSRELATVRAGRANAGLLEKVTVDYYGVATPINQLATISVPEARMLVIQP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDKS +K +EKAI++SDLG+TP+NDG VIRL +P LT ERR+EL+K+V K +EE KVAVR
Sbjct: 70 YDKSVIKEMEKAILASDLGVTPSNDGSVIRLVIPPLTEERRRELAKLVKKYSEEAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRRDA +KL+K +++ED ++ + ++QKLTD ++ KID+I K+KEKE+++V
Sbjct: 130 NIRRDANDELKKLEKNSEITEDELRSYTDEVQKLTDSHIAKIDAITKEKEKEVMEV 185
>gi|313893396|ref|ZP_07826968.1| ribosome recycling factor [Veillonella sp. oral taxon 158 str.
F0412]
gi|313442037|gb|EFR60457.1| ribosome recycling factor [Veillonella sp. oral taxon 158 str.
F0412]
Length = 186
Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 128/174 (73%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM ++I+ ++ F S+RTGR++ A+LDK+ V+YYGSP + +A I+ P+ ++I P+D
Sbjct: 13 RMNKSIEALKHEFASIRTGRASVALLDKVMVDYYGSPSPINQVANISVPEPRMIVIAPWD 72
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+ + +IEKAI+ SDLG+ P NDG IRLT+PQLT ERRKE+ KVV K+AE+ KVAVRNI
Sbjct: 73 KTMIGAIEKAILQSDLGLNPGNDGAQIRLTIPQLTEERRKEIVKVVHKKAEDAKVAVRNI 132
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD A +K +K K ++ED+ KD ++QKLTD +K ID + KEK++L+V
Sbjct: 133 RRDVNDALKKEEKAKTITEDDAKDGLDEIQKLTDAKVKHIDELKAVKEKDVLEV 186
>gi|255029475|ref|ZP_05301426.1| ribosome recycling factor [Listeria monocytogenes LO28]
Length = 182
Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 125/173 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +ME+ + ++R GR+N ++LD++ V+YYG+ + +A I+ P++ LLI P
Sbjct: 10 KEKMEKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAATPVNQMASISVPEARMLLITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+ L IEKAI+ SDLG+TPNNDG V+RL++PQLT ERRKEL K V K+AEE KVAVR
Sbjct: 70 YDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
NIRR+A + +KL+K ++ED+++ D+QKLTDE +K IDSI K KE E+
Sbjct: 130 NIRREANEELKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITKDKEAEI 182
>gi|222152659|ref|YP_002561834.1| ribosome recycling factor [Streptococcus uberis 0140J]
gi|254809534|sp|B9DRF1.1|RRF_STRU0 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|222113470|emb|CAR41195.1| ribosome recycling factor [Streptococcus uberis 0140J]
Length = 185
Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 123/174 (70%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
R E++ + + S+R GR+N ++LD+I+VEYYG P L +A I P++ LLI P+D
Sbjct: 12 RFEQSFQSLSREYASIRAGRANASLLDRIQVEYYGVPTPLNQLASITVPEARVLLISPFD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KSS+K IE+AI +SDLG+TP NDG VIRL +P LT E RKEL+K V K E K+A+RNI
Sbjct: 72 KSSIKDIERAINASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENQKIAIRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA+ +K +K K+++ED +K L D+QK TD+ +K ID + +KEKELL V
Sbjct: 132 RRDAMDEAKKQEKNKEITEDELKALEKDIQKATDQAIKHIDGMTSEKEKELLTV 185
>gi|293374703|ref|ZP_06621011.1| ribosome recycling factor [Turicibacter sanguinis PC909]
gi|325840609|ref|ZP_08167090.1| ribosome recycling factor [Turicibacter sp. HGF1]
gi|292646617|gb|EFF64619.1| ribosome recycling factor [Turicibacter sanguinis PC909]
gi|325490258|gb|EGC92591.1| ribosome recycling factor [Turicibacter sp. HGF1]
Length = 185
Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 133/178 (74%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ +ARM + ID ++ F+ +RTGR++ A+LD I+V+YYG P + +AQ+ P+ L++
Sbjct: 8 NAEARMSKAIDSLKREFSVLRTGRASGALLDNIQVDYYGMPSPINQMAQVTVPEPRQLVV 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+PYDKS L++IE+AI +++G+TPNNDGEVIRL +P LT ERR+EL+K V AE+ KVA
Sbjct: 68 KPYDKSMLQAIERAINEANIGLTPNNDGEVIRLNVPALTEERRRELAKKVKGFAEDAKVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RN+RRDA +KLQK +++ED +K + D+QKLTD+ +K++D+ +KEK+++ +
Sbjct: 128 IRNVRRDANDELKKLQKNGEITEDALKGYTEDVQKLTDKKIKEVDATADEKEKDIMSI 185
>gi|146297354|ref|YP_001181125.1| ribosome recycling factor [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|226703256|sp|A4XLZ9.1|RRF_CALS8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|145410930|gb|ABP67934.1| ribosome recycling factor [Caldicellulosiruptor saccharolyticus DSM
8903]
Length = 184
Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 128/174 (73%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++ I+ ++ F +VR GR+NP +LDK+ V+YYG P + +A I P++ ++IQP++
Sbjct: 11 KMKKAIETLKEEFATVRAGRANPHILDKVMVDYYGVPTPIPQLASITVPEARMIVIQPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
LK IEKAI +DLG+ P NDG+VIRL P+LT ERRKEL K V K AE+ KVA+RNI
Sbjct: 71 ARMLKEIEKAIQKADLGVNPANDGKVIRLIFPELTEERRKELVKQVKKMAEDAKVAIRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RR+A+ Y+K++K +++ED++KD D+QKL D+Y+++I+ + KEKE+++V
Sbjct: 131 RREAIDEYKKMKKNNEITEDDLKDAEEDVQKLHDKYIEQIEKLLSAKEKEIMEV 184
>gi|302670318|ref|YP_003830278.1| ribosome recycling factor Frr [Butyrivibrio proteoclasticus B316]
gi|302394791|gb|ADL33696.1| ribosome recycling factor Frr [Butyrivibrio proteoclasticus B316]
Length = 183
Score = 183 bits (464), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 131/174 (75%), Gaps = 1/174 (0%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M+++ D +R + S+R GR+NP +LDKI+V+YYG+P L+ + ++ P++ + I P+D
Sbjct: 11 KMQKSFDYLREDLASIRAGRANPHVLDKIKVDYYGTPTPLQQVGNVSVPEARIIQIAPWD 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+ +K IEKAI+ SDLG+TP+NDG VIRL P+LT ERRK+L+K + K+ E+ KVAVRN+
Sbjct: 71 KTLIKDIEKAIMMSDLGITPSNDGTVIRLVFPELTEERRKQLTKDIRKKGEDAKVAVRNV 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD A++KL K ++SED + DL+ +LQK+TD+++K ID ++K KE++ V
Sbjct: 131 RRDGNDAFKKL-KGTEVSEDEINDLNEELQKITDKFIKDIDVAVEEKNKEVMTV 183
>gi|238019366|ref|ZP_04599792.1| hypothetical protein VEIDISOL_01230 [Veillonella dispar ATCC 17748]
gi|237864065|gb|EEP65355.1| hypothetical protein VEIDISOL_01230 [Veillonella dispar ATCC 17748]
Length = 186
Score = 183 bits (464), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 128/174 (73%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM ++I+ ++ F S+RTGR++ A+LDK+ V+YYGSP + +A I+ P+ ++I P+D
Sbjct: 13 RMNKSIEALKHEFASIRTGRASVALLDKVMVDYYGSPSPINQVANISVPEPRMIVIAPWD 72
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+ + +IEKAI+ SDLG+ P NDG IRLT+PQLT ERRKE+ KVV K+AE+ KVAVRNI
Sbjct: 73 KTMIGAIEKAILQSDLGLNPGNDGAQIRLTIPQLTEERRKEIVKVVHKKAEDAKVAVRNI 132
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD A +K +K K ++ED+ KD +QKLTD +K+ID + KEK++L+V
Sbjct: 133 RRDVNDALKKEEKAKTITEDDAKDGLDQIQKLTDAKIKQIDELKAVKEKDVLEV 186
>gi|197303245|ref|ZP_03168286.1| hypothetical protein RUMLAC_01968 [Ruminococcus lactaris ATCC
29176]
gi|197297671|gb|EDY32230.1| ribosome recycling factor [Ruminococcus lactaris ATCC 29176]
Length = 183
Score = 183 bits (464), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 129/174 (74%), Gaps = 1/174 (0%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +TI+ + ++R GR+NP +LDKI V+YYGSP ++ +A ++ P++ + IQP++
Sbjct: 11 KMTKTINNLDGELATIRAGRANPHVLDKIAVDYYGSPTPIQQVANVSVPEARMIQIQPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS LK+IEKAI++SD+G+ P NDG IRL P+LT +RRKEL+K V K+ EE KVAVRNI
Sbjct: 71 KSMLKAIEKAILTSDIGINPTNDGTSIRLVFPELTEDRRKELAKDVKKKGEEAKVAVRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD A++KL K ++SED +KDL +LQK+TD+Y+ ++D + + K KE++ V
Sbjct: 131 RRDGNVAFKKL-KGTEISEDEIKDLEDELQKITDKYIAQVDKMVEAKSKEIMTV 183
>gi|386040611|ref|YP_005959565.1| ribosome-recycling factor RRF; Ribosome-releasing factor
[Paenibacillus polymyxa M1]
gi|343096649|emb|CCC84858.1| ribosome-recycling factor RRF; Ribosome-releasing factor
[Paenibacillus polymyxa M1]
Length = 184
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/182 (47%), Positives = 130/182 (71%), Gaps = 1/182 (0%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
S++K + RM++ I ++ + S+R GR+ PA+LD+++VEYYG+ + +A INTPDS
Sbjct: 4 SVKKSAEERMQKAIQALQRDLASLRAGRATPALLDRVQVEYYGAMTPVNQLANINTPDSR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
+L+IQP+DKSSL IE+AI SDLG+TP+NDG IRL++P LT ERR +L K+ K EE
Sbjct: 64 TLMIQPWDKSSLADIERAIQKSDLGLTPSNDGNTIRLSIPALTEERRTDLVKLTKKSGEE 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
K+A+RNIRRDA +K++K +SED + D+QK TD+++ ++D + KEKE++
Sbjct: 124 AKIAIRNIRRDANDDIKKMEK-SDISEDESRKHQEDIQKTTDKFIAEVDKVLAAKEKEIM 182
Query: 275 KV 276
+V
Sbjct: 183 EV 184
>gi|312866459|ref|ZP_07726677.1| ribosome recycling factor [Streptococcus downei F0415]
gi|311098153|gb|EFQ56379.1| ribosome recycling factor [Streptococcus downei F0415]
Length = 185
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 87/162 (53%), Positives = 121/162 (74%)
Query: 115 FNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIV 174
F+++R GR+N ++LD+IEV+YYG+P L +A I P++ LLI P+DK+S+K IE+AI
Sbjct: 24 FSAIRAGRANASLLDRIEVDYYGAPTPLNQLASITVPEARVLLISPFDKNSIKEIERAIN 83
Query: 175 SSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQ 234
SDLG+ P NDG VIRL +P LT E RK+L+K V K E KVA+RNIRRDA+ +K +
Sbjct: 84 ESDLGINPANDGSVIRLVIPALTEETRKDLAKEVKKLGENAKVAIRNIRRDAMDDAKKQE 143
Query: 235 KEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
K+K+++ED +K L D+QK TD+ +KKIDS+ +KEKELL V
Sbjct: 144 KDKEITEDELKSLEKDIQKATDDAVKKIDSMTNEKEKELLTV 185
>gi|157692331|ref|YP_001486793.1| ribosome recycling factor [Bacillus pumilus SAFR-032]
gi|166991553|sp|A8FDB6.1|RRF_BACP2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|157681089|gb|ABV62233.1| peptide chain release factor RF4 [Bacillus pumilus SAFR-032]
Length = 185
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/176 (50%), Positives = 125/176 (71%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +ME+ + +VR GR+N ++LDK+ V+YYG+ L IA I P++ L+I P
Sbjct: 10 KEKMEKAVQAYGRELATVRAGRANASLLDKVTVDYYGAQTPLNQIASITVPEARMLIITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+++ IEK+I SDLG+TP +DG VIR+ +P LT ERRKEL KVV K +EE KVAVR
Sbjct: 70 YDKTAIGDIEKSIQKSDLGITPTSDGNVIRIAIPALTEERRKELVKVVRKYSEEAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N+RRDA +KL+K +++ED ++ + D+QKLTDEY+ KID + K KEKE+++V
Sbjct: 130 NVRRDANDELKKLEKNGEITEDELRSSTEDVQKLTDEYVAKIDDVMKDKEKEIMEV 185
>gi|194015089|ref|ZP_03053706.1| ribosome recycling factor [Bacillus pumilus ATCC 7061]
gi|194014115|gb|EDW23680.1| ribosome recycling factor [Bacillus pumilus ATCC 7061]
Length = 185
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/176 (50%), Positives = 125/176 (71%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +ME+ + +VR GR+N ++LDK+ V+YYG+ L IA I P++ L+I P
Sbjct: 10 KEKMEKAVQAYGRELATVRAGRANASLLDKVTVDYYGAQTPLNQIASITVPEARMLIITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+++ IEK+I SDLG+TP +DG VIR+ +P LT ERRKEL KVV K +EE KVAVR
Sbjct: 70 YDKTAIGDIEKSIQKSDLGITPTSDGNVIRIAIPALTEERRKELVKVVRKYSEEAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N+RRDA +KL+K +++ED ++ + D+QKLTDEY+ KID + K KEKE+++V
Sbjct: 130 NVRRDANDELKKLEKNGEITEDELRSSTEDVQKLTDEYVAKIDDVTKDKEKEIMEV 185
>gi|387783505|ref|YP_006069588.1| ribosome recycling factor (ribosome-releasing factor) (RRF)
[Streptococcus salivarius JIM8777]
gi|338744387|emb|CCB94753.1| ribosome recycling factor (ribosome-releasing factor) (RRF)
[Streptococcus salivarius JIM8777]
Length = 185
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 91/181 (50%), Positives = 125/181 (69%), Gaps = 1/181 (0%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
IEK K R + + + F S+R GR+N ++LD+I VEYYG+P L +A I P++
Sbjct: 6 IEK-AKERFAHSHESLAREFGSIRAGRANASLLDRITVEYYGAPTPLNQLASITVPEARV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LLI P+DK S+ IE+AI SDLG+ P NDG V+RL +P LT E RKEL+K V K E
Sbjct: 65 LLISPFDKGSIADIERAINESDLGINPANDGSVVRLVIPALTEETRKELAKEVKKVGENA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
K+A+RNIRRDA+ +K +K+K+++ED +K L D+QK TD+ +KKIDS+ +KEKELL
Sbjct: 125 KIAIRNIRRDAMDEAKKQEKDKEITEDQLKSLEKDIQKATDDAVKKIDSMTAEKEKELLT 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|225388995|ref|ZP_03758719.1| hypothetical protein CLOSTASPAR_02740 [Clostridium asparagiforme
DSM 15981]
gi|225044935|gb|EEG55181.1| hypothetical protein CLOSTASPAR_02740 [Clostridium asparagiforme
DSM 15981]
Length = 183
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 134/175 (76%), Gaps = 2/175 (1%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +T+D++ F ++R GR+NP +LDKI+V+YYG+P L+ + I+ P++ ++IQP++
Sbjct: 10 KMNKTLDVLEDEFGAIRAGRANPHVLDKIKVDYYGTPTPLQQVGNISVPEARMIVIQPWE 69
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS +K IEKAI++S+LG+ PNNDG IRL P+LT +RRKEL+K V K+ ++ KVA+RNI
Sbjct: 70 KSLIKPIEKAILTSELGINPNNDGNAIRLIFPELTEDRRKELAKDVKKKGDQAKVAIRNI 129
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSD-LQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA+ A++K++K +SED+ +DL+ + +QKLTD+ ++K+D + K KE++ V
Sbjct: 130 RRDAMDAFKKMEKSGDMSEDD-RDLAEEKMQKLTDKMIEKVDKAVETKTKEIMTV 183
>gi|322372351|ref|ZP_08046887.1| ribosome recycling factor [Streptococcus sp. C150]
gi|419707229|ref|ZP_14234722.1| Ribosome-recycling factor (RRF) (Ribosome-releasing factor)
[Streptococcus salivarius PS4]
gi|321277393|gb|EFX54462.1| ribosome recycling factor [Streptococcus sp. C150]
gi|383283001|gb|EIC80972.1| Ribosome-recycling factor (RRF) (Ribosome-releasing factor)
[Streptococcus salivarius PS4]
Length = 185
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 91/181 (50%), Positives = 125/181 (69%), Gaps = 1/181 (0%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
IEK K R + + + F S+R GR+N ++LD+I VEYYG+P L +A I P++
Sbjct: 6 IEK-AKERFAHSHESLAREFGSIRAGRANASLLDRITVEYYGAPTPLNQLASITVPEARV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LLI P+DK S+ IE+AI SDLG+ P NDG V+RL +P LT E RKEL+K V K E
Sbjct: 65 LLISPFDKGSIADIERAINESDLGINPANDGSVVRLVIPALTEETRKELAKEVKKVGENA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
K+A+RNIRRDA+ +K +K+K+++ED +K L D+QK TD+ +KKIDS+ +KEKELL
Sbjct: 125 KIAIRNIRRDAMDEAKKQEKDKEITEDQLKGLEKDIQKATDDAVKKIDSMTAEKEKELLT 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|345888558|ref|ZP_08839635.1| ribosome-recycling factor [Bilophila sp. 4_1_30]
gi|345040575|gb|EGW44818.1| ribosome-recycling factor [Bilophila sp. 4_1_30]
Length = 186
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/183 (45%), Positives = 132/183 (72%)
Query: 92 EKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTP 151
+K S+ D + RM++ + + +F+ +RTGR++ ++D I+V+YYG+P + +A + P
Sbjct: 2 DKESVLLDSEDRMDKALGALDRDFSRLRTGRASTGLVDNIKVDYYGTPTPISQLASVAIP 61
Query: 152 DSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 211
DS ++ IQP+D+ + S+EKAI+ SDLG+TP NDG++IR+++P LT +RRKEL K+ K
Sbjct: 62 DSRTITIQPWDRGAFASVEKAILKSDLGLTPVNDGKIIRISIPPLTEDRRKELGKLARKS 121
Query: 212 AEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEK 271
EE KVAVRN+RRDA +KL+K+K +SED +K + D+QKLTD+Y+ K+D KEK
Sbjct: 122 GEEAKVAVRNVRRDANDQLKKLEKDKAISEDELKKATDDVQKLTDKYVAKVDEKCAAKEK 181
Query: 272 ELL 274
E++
Sbjct: 182 EIM 184
>gi|89895289|ref|YP_518776.1| ribosome recycling factor [Desulfitobacterium hafniense Y51]
gi|423073374|ref|ZP_17062115.1| ribosome recycling factor [Desulfitobacterium hafniense DP7]
gi|122482357|sp|Q24UG0.1|RRF_DESHY RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|89334737|dbj|BAE84332.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|361855825|gb|EHL07778.1| ribosome recycling factor [Desulfitobacterium hafniense DP7]
Length = 185
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 89/179 (49%), Positives = 130/179 (72%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+ + RM + ++ ++ + ++R GR+NP MLDKI VEYYG+ + +A I+ P+ L
Sbjct: 7 KEAEDRMVKAVEALKREYATIRAGRANPNMLDKITVEYYGTQTPVNQLANISVPEPRMLT 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+DKSSL IEKAI+ SDLG+ P++DG VIRL +PQLT+ERR E+ K V K+AE+ +V
Sbjct: 67 IQPWDKSSLPMIEKAILKSDLGLNPSSDGTVIRLLIPQLTAERRTEIVKTVKKKAEDSRV 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
AVRNIRRD+ +KL+K+ SED VK D+QK+TD+++K+I+ I KEKE+++V
Sbjct: 127 AVRNIRRDSNDELKKLEKDHTASEDEVKRAQDDVQKMTDKFVKEIERIMGTKEKEIMEV 185
>gi|376260760|ref|YP_005147480.1| ribosome recycling factor [Clostridium sp. BNL1100]
gi|373944754|gb|AEY65675.1| ribosome recycling factor [Clostridium sp. BNL1100]
Length = 185
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 132/179 (73%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K ++ +M++TI++++ N +R GR+NPA+LDK+ ++YYG+P ++ IA ++ P++ +L
Sbjct: 7 KPIEEKMKKTINVLKDNLAGIRAGRANPAILDKLTIDYYGAPTPIQQIATVSVPEARVIL 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP++ LK IEK I SD+G+ PNNDG+VIRL P LT ERRKEL+K K+ EE KV
Sbjct: 67 IQPWEAKLLKDIEKEIQKSDIGINPNNDGKVIRLVFPALTEERRKELTKQAKKEGEESKV 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+R+IRRD++++ + +K +++ED++KD D+Q LTD Y+ ID I + K+KE+++V
Sbjct: 127 AIRSIRRDSIESMKAKKKSGEITEDDLKDAEKDIQNLTDRYIADIDKIIEAKDKEIMEV 185
>gi|255283877|ref|ZP_05348432.1| ribosome recycling factor [Bryantella formatexigens DSM 14469]
gi|255265598|gb|EET58803.1| ribosome recycling factor [Marvinbryantia formatexigens DSM 14469]
Length = 183
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 125/174 (71%), Gaps = 1/174 (0%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +T + + F ++R GR+NP +LD+I V+YYG+P ++ + +N P++ + IQP+D
Sbjct: 11 KMTKTYNNLLAEFGAIRAGRANPHVLDRIMVDYYGTPTPIQQVGNVNVPEARMIQIQPWD 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
S LK+I KAI +SDLG+ P NDG VIRL P+LT ERRK+L K V K+ E KVAVRNI
Sbjct: 71 TSMLKAITKAIQTSDLGINPTNDGRVIRLVFPELTEERRKDLVKEVKKKGEGAKVAVRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA A++KL K +SED +K+L + +QKLTD+YMK IDS ++K KE++ V
Sbjct: 131 RRDANDAFKKL-KGTDVSEDTIKELENAMQKLTDKYMKDIDSAVEEKSKEIMTV 183
>gi|225181371|ref|ZP_03734815.1| ribosome recycling factor [Dethiobacter alkaliphilus AHT 1]
gi|225167952|gb|EEG76759.1| ribosome recycling factor [Dethiobacter alkaliphilus AHT 1]
Length = 185
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 136/182 (74%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
S+ D + RME+ + ++ + ++R GR+ P++LDKI V+YYGS + + +A ++TP+
Sbjct: 4 SVYSDAQERMEKAVSALKRDLATLRAGRATPSLLDKIVVDYYGSSMPINQLANVSTPEPR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
L+IQP+DK+++ +E+AI+ SDLG+TP +DG +IRL +PQLT ERRKEL KV K+AE+
Sbjct: 64 LLVIQPWDKNAVAEVERAILKSDLGLTPVSDGSIIRLAIPQLTEERRKELVKVSKKKAED 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
G+V++RNIRRDA + ++L+K+ +++ED + D+QKLTD+++ + DS+ KEKE++
Sbjct: 124 GRVSIRNIRRDANEDLKRLEKDNEITEDELHKAQDDIQKLTDKFIAEADSVLDAKEKEIM 183
Query: 275 KV 276
+V
Sbjct: 184 EV 185
>gi|163791595|ref|ZP_02185996.1| ribosome recycling factor [Carnobacterium sp. AT7]
gi|159873144|gb|EDP67247.1| ribosome recycling factor [Carnobacterium sp. AT7]
Length = 185
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 127/174 (72%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +T ++ ++R GR+N +LD+I V YYG+P LK +AQI+ P+ L+I P+D
Sbjct: 12 KMVKTESALQRELGTIRAGRANAGLLDRINVVYYGAPTPLKQLAQISVPEPRVLMITPFD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+S+ IEK+I+ SDLG++P NDG VIRL +PQLT ERRKEL+K V K+AE KV+VRNI
Sbjct: 72 KTSISDIEKSIMQSDLGISPANDGNVIRLVIPQLTEERRKELAKKVGKEAENAKVSVRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RR+A+ +K +K ++++D+++ D+QK+T+E +K ID+I +KEKELL V
Sbjct: 132 RREAMDELKKAEKNNEITQDDLRTFEEDIQKITNESVKNIDAIAAEKEKELLDV 185
>gi|354806910|ref|ZP_09040388.1| ribosome recycling factor [Lactobacillus curvatus CRL 705]
gi|354514550|gb|EHE86519.1| ribosome recycling factor [Lactobacillus curvatus CRL 705]
Length = 185
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 87/175 (49%), Positives = 124/175 (70%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ KA ME+ ++ +R GR+N ++++++ VEYYG+ L IA I P++ LLI
Sbjct: 8 EAKASMEKAEASLQRTLGQIRAGRANASLVNRVNVEYYGAMTPLNQIAAITVPEARVLLI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
PYDK +L+ IEKA+ ++DLG++P NDG VIRL +PQLT ERRKE++K V K+AE GKVA
Sbjct: 68 TPYDKGALEDIEKALYTADLGISPANDGSVIRLVIPQLTGERRKEIAKEVGKEAEIGKVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+RN RRDA+ + +K +K ++SED + DL +QKLT+E KKID I K KEKE+
Sbjct: 128 IRNARRDAMDSLKKAEKASEISEDEMHDLEEQVQKLTNEATKKIDEIAKNKEKEI 182
>gi|313891269|ref|ZP_07824887.1| ribosome recycling factor [Streptococcus pseudoporcinus SPIN 20026]
gi|416852941|ref|ZP_11910086.1| ribosome recycling factor [Streptococcus pseudoporcinus LQ 940-04]
gi|313120336|gb|EFR43457.1| ribosome recycling factor [Streptococcus pseudoporcinus SPIN 20026]
gi|356740430|gb|EHI65662.1| ribosome recycling factor [Streptococcus pseudoporcinus LQ 940-04]
Length = 185
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/176 (50%), Positives = 127/176 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K R E++ + + S+R GR+N ++LD+I+V+YYG+P L ++ I P++ LLI P
Sbjct: 10 KQRFEQSFQSLSREYASIRAGRANASLLDRIQVDYYGAPTPLNQLSSITVPEARVLLISP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
+DK+S+K IE+AI +SDLG+TP NDG VIRL +P LT E RK L+K V K E KVA+R
Sbjct: 70 FDKNSIKDIERAINASDLGITPANDGSVIRLVIPALTEETRKNLAKEVKKVGENQKVAIR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRRDA+ +K +K+K++SED +K L D+QK+TD+ +K ID++ +KEKELL V
Sbjct: 130 NIRRDAMDEAKKQEKDKEISEDELKTLEKDIQKVTDDAIKHIDAMTAEKEKELLSV 185
>gi|228477911|ref|ZP_04062525.1| ribosome recycling factor [Streptococcus salivarius SK126]
gi|340398245|ref|YP_004727270.1| ribosome recycling factor (RRF) [Streptococcus salivarius CCHSS3]
gi|421451799|ref|ZP_15901160.1| Ribosome Recycling Factor (RRF) [Streptococcus salivarius K12]
gi|228250401|gb|EEK09641.1| ribosome recycling factor [Streptococcus salivarius SK126]
gi|338742238|emb|CCB92743.1| ribosome recycling factor (ribosome-releasing factor) (RRF)
[Streptococcus salivarius CCHSS3]
gi|400182230|gb|EJO16492.1| Ribosome Recycling Factor (RRF) [Streptococcus salivarius K12]
Length = 185
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 91/181 (50%), Positives = 125/181 (69%), Gaps = 1/181 (0%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
IEK K R + + + F S+R GR+N ++LD+I VEYYG+P L +A I P++
Sbjct: 6 IEK-AKERFAHSHESLAREFGSIRAGRANASLLDRITVEYYGAPTPLNQLASITVPEARV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LLI P+DK S+ IE+AI SDLG+ P NDG V+RL +P LT E RKEL+K V K E
Sbjct: 65 LLISPFDKGSIADIERAINESDLGINPANDGSVVRLVIPALTEETRKELAKEVKKVGENA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
K+A+RNIRRDA+ +K +K+K+++ED +K L D+QK TD+ +KKIDS+ +KEKELL
Sbjct: 125 KIAIRNIRRDAMDEAKKQEKDKEITEDQLKALEKDIQKATDDAVKKIDSMTAEKEKELLT 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|218295073|ref|ZP_03495909.1| ribosome recycling factor [Thermus aquaticus Y51MC23]
gi|218244276|gb|EED10801.1| ribosome recycling factor [Thermus aquaticus Y51MC23]
Length = 185
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 132/176 (75%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ ++ M+++++ + N + +RTGR+NPA+L ++VEYYG+PV L IA ++ PD+ +L++
Sbjct: 9 ETRSHMQKSLEALEHNLSGLRTGRANPALLLHLKVEYYGTPVPLSQIATVSAPDARTLVV 68
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
Q +D+++LK+IEKAI SDLG+ P+N G+ + + +P LT ERRKEL K AEEG++A
Sbjct: 69 QSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKELVKAARHYAEEGRIA 128
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
+RNIRR+AL+ +KL KE LSED+ K +++QK+TDE++ K+D + ++KE E+L
Sbjct: 129 IRNIRREALEKLKKLAKELHLSEDDTKRAEAEIQKITDEFIAKVDELLEKKEAEIL 184
>gi|42782915|ref|NP_980162.1| ribosome recycling factor [Bacillus cereus ATCC 10987]
gi|206978510|ref|ZP_03239367.1| ribosome recycling factor [Bacillus cereus H3081.97]
gi|217961244|ref|YP_002339812.1| ribosome recycling factor [Bacillus cereus AH187]
gi|229140465|ref|ZP_04269020.1| Ribosome-recycling factor [Bacillus cereus BDRD-ST26]
gi|229197934|ref|ZP_04324650.1| Ribosome-recycling factor [Bacillus cereus m1293]
gi|375285747|ref|YP_005106186.1| ribosome recycling factor [Bacillus cereus NC7401]
gi|384181637|ref|YP_005567399.1| ribosome recycling factor [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|402556055|ref|YP_006597326.1| ribosome recycling factor [Bacillus cereus FRI-35]
gi|423353526|ref|ZP_17331153.1| ribosome-recycling factor [Bacillus cereus IS075]
gi|423374379|ref|ZP_17351717.1| ribosome-recycling factor [Bacillus cereus AND1407]
gi|423567281|ref|ZP_17543528.1| ribosome-recycling factor [Bacillus cereus MSX-A12]
gi|423574570|ref|ZP_17550689.1| ribosome-recycling factor [Bacillus cereus MSX-D12]
gi|423604549|ref|ZP_17580442.1| ribosome-recycling factor [Bacillus cereus VD102]
gi|60390260|sp|Q732P5.1|RRF_BACC1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|226703254|sp|B7HLF7.1|RRF_BACC7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|42738842|gb|AAS42770.1| ribosome recycling factor [Bacillus cereus ATCC 10987]
gi|206743279|gb|EDZ54729.1| ribosome recycling factor [Bacillus cereus H3081.97]
gi|217063331|gb|ACJ77581.1| ribosome recycling factor [Bacillus cereus AH187]
gi|228585652|gb|EEK43754.1| Ribosome-recycling factor [Bacillus cereus m1293]
gi|228643026|gb|EEK99302.1| Ribosome-recycling factor [Bacillus cereus BDRD-ST26]
gi|324327721|gb|ADY22981.1| ribosome recycling factor [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|358354274|dbj|BAL19446.1| ribosome recycling factor [Bacillus cereus NC7401]
gi|401089339|gb|EJP97510.1| ribosome-recycling factor [Bacillus cereus IS075]
gi|401094291|gb|EJQ02373.1| ribosome-recycling factor [Bacillus cereus AND1407]
gi|401212095|gb|EJR18841.1| ribosome-recycling factor [Bacillus cereus MSX-D12]
gi|401214369|gb|EJR21099.1| ribosome-recycling factor [Bacillus cereus MSX-A12]
gi|401245169|gb|EJR51527.1| ribosome-recycling factor [Bacillus cereus VD102]
gi|401797265|gb|AFQ11124.1| ribosome recycling factor [Bacillus cereus FRI-35]
Length = 185
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 126/174 (72%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+ME+ + +VR GR+N ++LDK++V+YYG+P + +A I P++ L+IQPYD
Sbjct: 12 KMEKAVAAYSRELATVRAGRANASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+S+ IEKAI+ +DLG+ P+NDG VIR+ P LT ERR++L KVV K AEE KVAVRN+
Sbjct: 72 KTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNV 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD +KL+K +++ED+++ + D+QK TD+Y+ K+D I K KEKE+++V
Sbjct: 132 RRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIMEV 185
>gi|406669327|ref|ZP_11076606.1| ribosome recycling factor [Facklamia ignava CCUG 37419]
gi|405583840|gb|EKB57771.1| ribosome recycling factor [Facklamia ignava CCUG 37419]
Length = 186
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/181 (46%), Positives = 132/181 (72%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S + K + RM ++I+ + ++R GR+N ++LD+++V+YYG+P L +A I +P++
Sbjct: 4 SELLKTTRERMSKSIESFKRELGTIRAGRANASILDRVQVQYYGAPTPLNQLASIASPEA 63
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LLI PYDKSSL IEKAI+ SD+G+TP+NDG VIRL +P LT ERR+ELSKVV K+ E
Sbjct: 64 RMLLITPYDKSSLGEIEKAILQSDVGITPSNDGNVIRLIIPALTKERRQELSKVVGKEQE 123
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
K+AVRNIRRD++ +K +K K+L+ED +++ ++QK+TD+ K+ID + ++K E+
Sbjct: 124 NAKIAVRNIRRDSIDEAKKAEKNKELTEDELRNYEEEIQKITDQSTKEIDKLAEEKIDEI 183
Query: 274 L 274
+
Sbjct: 184 M 184
>gi|363889182|ref|ZP_09316547.1| ribosome recycling factor [Eubacteriaceae bacterium CM5]
gi|363891728|ref|ZP_09318905.1| ribosome recycling factor [Eubacteriaceae bacterium CM2]
gi|363895696|ref|ZP_09322686.1| ribosome recycling factor [Eubacteriaceae bacterium ACC19a]
gi|402837360|ref|ZP_10885885.1| ribosome recycling factor [Eubacteriaceae bacterium OBRC8]
gi|361956663|gb|EHL09976.1| ribosome recycling factor [Eubacteriaceae bacterium ACC19a]
gi|361965002|gb|EHL18000.1| ribosome recycling factor [Eubacteriaceae bacterium CM2]
gi|361966978|gb|EHL19850.1| ribosome recycling factor [Eubacteriaceae bacterium CM5]
gi|402275477|gb|EJU24630.1| ribosome recycling factor [Eubacteriaceae bacterium OBRC8]
Length = 185
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 87/173 (50%), Positives = 126/173 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +ME+TI +++ + N++RTGR+NP MLDK++V+YYGS +K I+ I++P+ +L IQP
Sbjct: 10 KEKMEKTISVLKEDLNTIRTGRANPKMLDKVQVDYYGSMTPIKQISTISSPEPRTLQIQP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
+DK SL IEKAI +DLG+ P NDG +IR+ +PQLT ERRKEL K K E KVAVR
Sbjct: 70 WDKGSLHLIEKAIQLADLGLNPTNDGNMIRINIPQLTEERRKELIKQAQKMGEHAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
N+RRDA +K +K+ +L+ED K ++QKLTDE++K +++ QKEK++
Sbjct: 130 NLRRDANDLIKKAEKDAQLAEDEAKKELDNIQKLTDEFVKHVETAIVQKEKDI 182
>gi|30021912|ref|NP_833543.1| ribosome recycling factor [Bacillus cereus ATCC 14579]
gi|47569102|ref|ZP_00239791.1| ribosome recycling factor [Bacillus cereus G9241]
gi|206972656|ref|ZP_03233597.1| ribosome recycling factor [Bacillus cereus AH1134]
gi|218234587|ref|YP_002368625.1| ribosome recycling factor [Bacillus cereus B4264]
gi|228922578|ref|ZP_04085878.1| Ribosome-recycling factor [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228954100|ref|ZP_04116129.1| Ribosome-recycling factor [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228960040|ref|ZP_04121704.1| Ribosome-recycling factor [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228986967|ref|ZP_04147093.1| Ribosome-recycling factor [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229047510|ref|ZP_04193100.1| Ribosome-recycling factor [Bacillus cereus AH676]
gi|229071322|ref|ZP_04204545.1| Ribosome-recycling factor [Bacillus cereus F65185]
gi|229081079|ref|ZP_04213589.1| Ribosome-recycling factor [Bacillus cereus Rock4-2]
gi|229111295|ref|ZP_04240848.1| Ribosome-recycling factor [Bacillus cereus Rock1-15]
gi|229129100|ref|ZP_04258073.1| Ribosome-recycling factor [Bacillus cereus BDRD-Cer4]
gi|229146395|ref|ZP_04274766.1| Ribosome-recycling factor [Bacillus cereus BDRD-ST24]
gi|229152023|ref|ZP_04280218.1| Ribosome-recycling factor [Bacillus cereus m1550]
gi|229157400|ref|ZP_04285478.1| Ribosome-recycling factor [Bacillus cereus ATCC 4342]
gi|229180100|ref|ZP_04307444.1| Ribosome-recycling factor [Bacillus cereus 172560W]
gi|229191993|ref|ZP_04318963.1| Ribosome-recycling factor [Bacillus cereus ATCC 10876]
gi|296504319|ref|YP_003666019.1| ribosome recycling factor [Bacillus thuringiensis BMB171]
gi|365159399|ref|ZP_09355580.1| ribosome-recycling factor [Bacillus sp. 7_6_55CFAA_CT2]
gi|423412371|ref|ZP_17389491.1| ribosome-recycling factor [Bacillus cereus BAG3O-2]
gi|423425960|ref|ZP_17402991.1| ribosome-recycling factor [Bacillus cereus BAG3X2-2]
gi|423431844|ref|ZP_17408848.1| ribosome-recycling factor [Bacillus cereus BAG4O-1]
gi|423437279|ref|ZP_17414260.1| ribosome-recycling factor [Bacillus cereus BAG4X12-1]
gi|423503499|ref|ZP_17480091.1| ribosome-recycling factor [Bacillus cereus HD73]
gi|423582034|ref|ZP_17558145.1| ribosome-recycling factor [Bacillus cereus VD014]
gi|423585767|ref|ZP_17561854.1| ribosome-recycling factor [Bacillus cereus VD045]
gi|423628917|ref|ZP_17604666.1| ribosome-recycling factor [Bacillus cereus VD154]
gi|423635405|ref|ZP_17611058.1| ribosome-recycling factor [Bacillus cereus VD156]
gi|423641095|ref|ZP_17616713.1| ribosome-recycling factor [Bacillus cereus VD166]
gi|423649687|ref|ZP_17625257.1| ribosome-recycling factor [Bacillus cereus VD169]
gi|423656683|ref|ZP_17631982.1| ribosome-recycling factor [Bacillus cereus VD200]
gi|449090765|ref|YP_007423206.1| ribosome recycling factor [Bacillus thuringiensis serovar kurstaki
str. HD73]
gi|33301535|sp|Q812X4.1|RRF_BACCR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|226703253|sp|B7HDU7.1|RRF_BACC4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|29897468|gb|AAP10744.1| Ribosome Recycling Factor (RRF) [Bacillus cereus ATCC 14579]
gi|47554264|gb|EAL12626.1| ribosome recycling factor [Bacillus cereus G9241]
gi|206732413|gb|EDZ49594.1| ribosome recycling factor [Bacillus cereus AH1134]
gi|218162544|gb|ACK62536.1| ribosome recycling factor [Bacillus cereus B4264]
gi|228591544|gb|EEK49393.1| Ribosome-recycling factor [Bacillus cereus ATCC 10876]
gi|228603309|gb|EEK60786.1| Ribosome-recycling factor [Bacillus cereus 172560W]
gi|228626127|gb|EEK82876.1| Ribosome-recycling factor [Bacillus cereus ATCC 4342]
gi|228631372|gb|EEK88006.1| Ribosome-recycling factor [Bacillus cereus m1550]
gi|228637028|gb|EEK93487.1| Ribosome-recycling factor [Bacillus cereus BDRD-ST24]
gi|228654337|gb|EEL10202.1| Ribosome-recycling factor [Bacillus cereus BDRD-Cer4]
gi|228672071|gb|EEL27362.1| Ribosome-recycling factor [Bacillus cereus Rock1-15]
gi|228702123|gb|EEL54599.1| Ribosome-recycling factor [Bacillus cereus Rock4-2]
gi|228711776|gb|EEL63728.1| Ribosome-recycling factor [Bacillus cereus F65185]
gi|228723757|gb|EEL75112.1| Ribosome-recycling factor [Bacillus cereus AH676]
gi|228772745|gb|EEM21185.1| Ribosome-recycling factor [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228799556|gb|EEM46509.1| Ribosome-recycling factor [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228805666|gb|EEM52256.1| Ribosome-recycling factor [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228837007|gb|EEM82348.1| Ribosome-recycling factor [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|296325371|gb|ADH08299.1| ribosome recycling factor [Bacillus thuringiensis BMB171]
gi|363625397|gb|EHL76438.1| ribosome-recycling factor [Bacillus sp. 7_6_55CFAA_CT2]
gi|401104439|gb|EJQ12416.1| ribosome-recycling factor [Bacillus cereus BAG3O-2]
gi|401110707|gb|EJQ18606.1| ribosome-recycling factor [Bacillus cereus BAG3X2-2]
gi|401116600|gb|EJQ24438.1| ribosome-recycling factor [Bacillus cereus BAG4O-1]
gi|401120434|gb|EJQ28230.1| ribosome-recycling factor [Bacillus cereus BAG4X12-1]
gi|401212913|gb|EJR19654.1| ribosome-recycling factor [Bacillus cereus VD014]
gi|401233113|gb|EJR39609.1| ribosome-recycling factor [Bacillus cereus VD045]
gi|401268462|gb|EJR74510.1| ribosome-recycling factor [Bacillus cereus VD154]
gi|401278156|gb|EJR84092.1| ribosome-recycling factor [Bacillus cereus VD156]
gi|401280156|gb|EJR86078.1| ribosome-recycling factor [Bacillus cereus VD166]
gi|401282967|gb|EJR88864.1| ribosome-recycling factor [Bacillus cereus VD169]
gi|401290424|gb|EJR96118.1| ribosome-recycling factor [Bacillus cereus VD200]
gi|402458853|gb|EJV90593.1| ribosome-recycling factor [Bacillus cereus HD73]
gi|449024522|gb|AGE79685.1| ribosome recycling factor [Bacillus thuringiensis serovar kurstaki
str. HD73]
Length = 185
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 126/174 (72%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+ME+ + +VR GR+N ++LDK++V+YYG+P + +A I P++ L+IQPYD
Sbjct: 12 KMEKAVAAYSRELATVRAGRANASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+S+ IEKAI+ +DLG+ P+NDG VIR+ P LT ERR++L KVV K AEE KVAVRN+
Sbjct: 72 KTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNV 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD +KL+K +++ED+++ + D+QK TD+Y+ K+D I K KEKE+++V
Sbjct: 132 RRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIMEV 185
>gi|260888303|ref|ZP_05899566.1| ribosome recycling factor [Selenomonas sputigena ATCC 35185]
gi|330838370|ref|YP_004412950.1| ribosome recycling factor [Selenomonas sputigena ATCC 35185]
gi|260861839|gb|EEX76339.1| ribosome recycling factor [Selenomonas sputigena ATCC 35185]
gi|329746134|gb|AEB99490.1| ribosome recycling factor [Selenomonas sputigena ATCC 35185]
Length = 185
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 127/174 (72%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM++T++ +R +F S+R GR+ PA+LD++ V+YYG P + +A I P+ L+I P++
Sbjct: 12 RMKKTLEALRRDFGSLRAGRATPALLDRVMVDYYGQPTPVSQVAAIAVPEPRMLMITPWE 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+ L IEKAI+ SDLG+TPN+DG +RL++PQLT ERR EL K + K+ E+ KVA+RNI
Sbjct: 72 KTILHDIEKAIMKSDLGLTPNSDGTAVRLSIPQLTQERRTELVKSLNKKTEDAKVAIRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA + +KL+K K+++ED+ K D+QKL D+Y+K +D KEKE+++V
Sbjct: 132 RRDANEQMKKLEKAKEITEDDAKKGQDDMQKLVDKYIKAVDDARVVKEKEIMEV 185
>gi|241890096|ref|ZP_04777394.1| ribosome recycling factor [Gemella haemolysans ATCC 10379]
gi|241863718|gb|EER68102.1| ribosome recycling factor [Gemella haemolysans ATCC 10379]
Length = 185
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/181 (46%), Positives = 131/181 (72%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I ++ RME+ I +R S+R G+++ A+LD++ V+YYG P + +A ++ P+
Sbjct: 5 IMNNLNERMEKAIASLRRELASIRAGKASAAVLDRLTVDYYGVPTPINQVAGVSVPEPKM 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L+I PY+K+ L IEKAI +SDLG+ P NDG VIR+ P LT ERRKEL+K+V K++E
Sbjct: 65 LVISPYEKTLLGDIEKAIQASDLGLNPANDGTVIRIVFPALTEERRKELAKLVGKESEGA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVAVRN+RRDA+ A +KL+K +++ED++K S D+QK+TD+++ +ID + K+K++EL+
Sbjct: 125 KVAVRNVRRDAMDAMKKLEKSSQITEDDLKGYSDDIQKVTDKFVAEIDKVTKEKQEELMS 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|365873882|ref|ZP_09413415.1| ribosome recycling factor [Thermanaerovibrio velox DSM 12556]
gi|363983969|gb|EHM10176.1| ribosome recycling factor [Thermanaerovibrio velox DSM 12556]
Length = 185
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/177 (47%), Positives = 133/177 (75%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K++K + E++I+ +R +RTGR++PA+++ I+V+Y+G+ +K +A + P+S L+
Sbjct: 7 KEMKQKTEKSIEHLRGTLQGIRTGRAHPALVEDIKVDYFGTLTPIKQMATVTVPESRQLV 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I P+DK++LK+IEKAI SS LG+TP DG+ +R+TLP+LT ERR+ELSK+V K AEE +V
Sbjct: 67 ITPWDKTALKAIEKAIQSSSLGVTPKTDGDSVRVTLPELTKERRQELSKLVNKYAEEARV 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
A+RNIRRD L+A++K++K +SED K L ++Q D +KK+D + ++KEKE+L
Sbjct: 127 AIRNIRRDVLEAFKKMEKAGDISEDEHKKLQKEVQDHIDGAIKKVDQMAQEKEKEIL 183
>gi|288905833|ref|YP_003431055.1| ribosome recycling factor [Streptococcus gallolyticus UCN34]
gi|306831922|ref|ZP_07465077.1| ribosome recycling factor [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|306834034|ref|ZP_07467155.1| ribosome recycling factor [Streptococcus bovis ATCC 700338]
gi|325978868|ref|YP_004288584.1| ribosome-recycling factor [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|336064767|ref|YP_004559626.1| ribosome recycling factor [Streptococcus pasteurianus ATCC 43144]
gi|386338302|ref|YP_006034471.1| ribosome recycling factor [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|288732559|emb|CBI14131.1| ribosome recycling factor [Streptococcus gallolyticus UCN34]
gi|304423822|gb|EFM26967.1| ribosome recycling factor [Streptococcus bovis ATCC 700338]
gi|304425848|gb|EFM28965.1| ribosome recycling factor [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325178796|emb|CBZ48840.1| Ribosome-recycling factor [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|334280938|dbj|BAK28512.1| ribosome recycling factor [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|334282967|dbj|BAK30540.1| ribosome recycling factor [Streptococcus pasteurianus ATCC 43144]
Length = 185
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/181 (51%), Positives = 126/181 (69%), Gaps = 1/181 (0%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
IEK K R E++ + F ++R GR+N ++LD+I+VEYYG+ L +A I P++
Sbjct: 6 IEK-AKERFEQSHSSLAREFAAIRAGRANASLLDRIQVEYYGAMTPLNQLASITVPEARV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LLI P+DKSSLK IE AI +SDLG+ P NDG VIRL +P LT E RKEL+K V K E
Sbjct: 65 LLISPFDKSSLKDIEHAINASDLGINPANDGSVIRLVIPALTEETRKELAKEVKKVGENA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVA+RNIRRDA+ +K +K K+++ED +K L D+QK TDE +K ID++ KEKELL+
Sbjct: 125 KVAIRNIRRDAMDEAKKQEKAKEITEDELKVLEKDIQKATDEAVKHIDAMTANKEKELLE 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|387761891|ref|YP_006068868.1| ribosome recycling factor [Streptococcus salivarius 57.I]
gi|418017264|ref|ZP_12656823.1| ribosome recycling factor [Streptococcus salivarius M18]
gi|339292658|gb|AEJ54005.1| ribosome recycling factor [Streptococcus salivarius 57.I]
gi|345527957|gb|EGX31265.1| ribosome recycling factor [Streptococcus salivarius M18]
Length = 185
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 91/181 (50%), Positives = 125/181 (69%), Gaps = 1/181 (0%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
IEK K R + + + F S+R GR+N ++LD+I VEYYG+P L +A I P++
Sbjct: 6 IEK-AKERFTHSHESLAREFGSIRAGRANASLLDRITVEYYGAPTPLNQLASITVPEARV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LLI P+DK S+ IE+AI SDLG+ P NDG V+RL +P LT E RKEL+K V K E
Sbjct: 65 LLISPFDKGSIADIERAINESDLGINPANDGSVVRLVIPALTEETRKELAKEVKKVGENA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
K+A+RNIRRDA+ +K +K+K+++ED +K L D+QK TD+ +KKIDS+ +KEKELL
Sbjct: 125 KIAIRNIRRDAMDEAKKQEKDKEITEDQLKALEKDIQKATDDAVKKIDSMTAEKEKELLT 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|317129173|ref|YP_004095455.1| ribosome recycling factor [Bacillus cellulosilyticus DSM 2522]
gi|315474121|gb|ADU30724.1| ribosome recycling factor [Bacillus cellulosilyticus DSM 2522]
Length = 185
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/179 (48%), Positives = 129/179 (72%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K + +M ++++ R ++R GR+NP++LDK++VEYYG L +A I P++ L
Sbjct: 7 KQAEVKMSKSVEAFRKELATIRAGRANPSLLDKVQVEYYGMMTPLNQLASIAVPEARMLT 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+DKSSL+ IE+AI +DLG++P NDG +IR+ +P LT ERRKEL K+V + +EE KV
Sbjct: 67 IQPFDKSSLQDIERAIQKADLGLSPTNDGNIIRIAIPALTEERRKELVKLVGRYSEEAKV 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
AVRNIRRDA +KL+K+ +L+ED+++ ++QKLTD +K ID I K KE+E+++V
Sbjct: 127 AVRNIRRDANDELKKLEKDGELTEDDLRWNQDEVQKLTDGVIKDIDEIAKSKEQEIMEV 185
>gi|291550817|emb|CBL27079.1| ribosome recycling factor [Ruminococcus torques L2-14]
Length = 183
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/185 (48%), Positives = 134/185 (72%), Gaps = 4/185 (2%)
Query: 92 EKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTP 151
EK+ I D +M +TI+ + ++R GR+NP +LDK+ V+YYG+P ++ +A ++ P
Sbjct: 3 EKNKIYDD---KMTKTINNLDGELATIRAGRANPHVLDKLAVDYYGTPTPIQQVANVSVP 59
Query: 152 DSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 211
++ + IQP++KS LK+IEKAI++SD+G+ P NDG IRL P+LT +RRKEL+K V K+
Sbjct: 60 EARMIQIQPWEKSMLKAIEKAILTSDIGINPTNDGTSIRLVFPELTEDRRKELAKDVKKK 119
Query: 212 AEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEK 271
EE KVAVRN+RRD A++KL K ++SED +KDL +LQK+TD+Y+ KID + + K K
Sbjct: 120 GEEAKVAVRNVRRDGNVAFKKL-KGTEISEDEIKDLEDELQKITDKYVAKIDKMVEAKSK 178
Query: 272 ELLKV 276
E++ V
Sbjct: 179 EIMTV 183
>gi|297584070|ref|YP_003699850.1| ribosome recycling factor [Bacillus selenitireducens MLS10]
gi|297142527|gb|ADH99284.1| ribosome recycling factor [Bacillus selenitireducens MLS10]
Length = 185
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/182 (47%), Positives = 132/182 (72%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
++ K+ + RM ++++ SVR GR+NP++LD+++VEYYG L +A I+ P+
Sbjct: 4 AVLKNAEERMNKSLESFGRELGSVRAGRANPSILDRVQVEYYGMMTPLNQLATISVPEGR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
L++QP+DKSSL IEKAI +DLG++P+NDG +IR+++P LT ERRKEL KVV + AE+
Sbjct: 64 LLVVQPFDKSSLPDIEKAIQKADLGLSPSNDGNIIRISIPALTEERRKELIKVVGRYAED 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
KVAVRN+RRDA +KL+K+ +++ED ++ D+QKLTD+Y+KKID K KE ++
Sbjct: 124 AKVAVRNVRRDANDELKKLEKDGEMTEDELRRGQDDVQKLTDDYIKKIDERVKAKENDIK 183
Query: 275 KV 276
+V
Sbjct: 184 EV 185
>gi|294102175|ref|YP_003554033.1| ribosome recycling factor [Aminobacterium colombiense DSM 12261]
gi|293617155|gb|ADE57309.1| ribosome recycling factor [Aminobacterium colombiense DSM 12261]
Length = 186
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/178 (48%), Positives = 131/178 (73%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K + +ME+ I+ ++ F S+RTGR++P +++ I V+YYGS +K +A ++ P++ +L
Sbjct: 7 KTMSEKMEKVIEHLKEEFISIRTGRAHPGLVNDIRVDYYGSQTPIKQLATVSVPEARQIL 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I P+D+S LK IEKAI +S LG+ P NDGE IRLTLP+LT ERR ELSKVV+K AEE ++
Sbjct: 67 IAPFDRSILKGIEKAIQASSLGINPQNDGENIRLTLPELTKERRIELSKVVSKYAEEARI 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
AVRNIRR+ +K++K+ +SED + + D+Q +TD+++KKID + K KEKE+++
Sbjct: 127 AVRNIRREVNDTLKKMEKDSVISEDEQRKYTKDVQDITDDFIKKIDEVLKVKEKEIIE 184
>gi|452820631|gb|EME27671.1| ribosome recycling factor (plastid) [Galdieria sulphuraria]
Length = 248
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/167 (50%), Positives = 125/167 (74%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S +K+ + RM+++++ V+ N +++RTGR+NPA+LD++ V YYG+ LKS+A I +
Sbjct: 66 SEAQKEAEERMKKSLETVKNNLSTLRTGRANPALLDRLTVSYYGTETPLKSLASITASSA 125
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
++L I+PYD+S +K IEKAI SDL +TPNNDG+ IRL LP LT ERRK+L K V + E
Sbjct: 126 TTLTIEPYDRSYVKDIEKAIAESDLALTPNNDGKSIRLELPPLTEERRKQLIKSVKQLTE 185
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMK 260
EG+VAVRNIRRD + +KL+K+ +L +D +K + D+QKLTD+Y+K
Sbjct: 186 EGRVAVRNIRRDIMDKLKKLEKDGELGKDEMKSIQDDIQKLTDKYIK 232
>gi|313673948|ref|YP_004052059.1| ribosome recycling factor [Calditerrivibrio nitroreducens DSM
19672]
gi|312940704|gb|ADR19896.1| ribosome recycling factor [Calditerrivibrio nitroreducens DSM
19672]
Length = 184
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/176 (48%), Positives = 136/176 (77%), Gaps = 1/176 (0%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +ME+T++ +T SVRTGR++ ++ D I+V+YYG+P L +A +N + ++IQP
Sbjct: 10 KEKMEKTLEHYKTELKSVRTGRASVSLFDNIKVDYYGTPTPLSQVAALNA-EPRMIIIQP 68
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
++ S +K IEKAI++S+LG+TP+NDG VIR+ +P LT ERRKE+ K+V K +EE K+A+R
Sbjct: 69 WEPSMIKPIEKAILTSNLGLTPSNDGRVIRVPIPPLTEERRKEIVKLVKKMSEEAKIAIR 128
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N RRDA++ +K++K+K++SED+ K + +QKLTDEY+KKID + ++KEKE++++
Sbjct: 129 NERRDAIEKLKKMEKDKEISEDDNKKGAEQIQKLTDEYIKKIDEVTEKKEKEIMEI 184
>gi|153815802|ref|ZP_01968470.1| hypothetical protein RUMTOR_02047 [Ruminococcus torques ATCC 27756]
gi|317502106|ref|ZP_07960287.1| ribosome recycling factor [Lachnospiraceae bacterium 8_1_57FAA]
gi|331090380|ref|ZP_08339261.1| ribosome-recycling factor [Lachnospiraceae bacterium 3_1_46FAA]
gi|336440188|ref|ZP_08619782.1| ribosome-recycling factor [Lachnospiraceae bacterium 1_1_57FAA]
gi|145846827|gb|EDK23745.1| ribosome recycling factor [Ruminococcus torques ATCC 27756]
gi|316896495|gb|EFV18585.1| ribosome recycling factor [Lachnospiraceae bacterium 8_1_57FAA]
gi|330401127|gb|EGG80720.1| ribosome-recycling factor [Lachnospiraceae bacterium 3_1_46FAA]
gi|336013855|gb|EGN43726.1| ribosome-recycling factor [Lachnospiraceae bacterium 1_1_57FAA]
Length = 183
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/175 (49%), Positives = 128/175 (73%), Gaps = 1/175 (0%)
Query: 102 ARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPY 161
++M +TI+ + ++R GR+NP +LDK+ V+YYGSP ++ +A ++ P++ + IQP+
Sbjct: 10 SKMTKTINNLDGELATIRAGRANPHVLDKLTVDYYGSPTPIQQVANVSVPEARMIQIQPW 69
Query: 162 DKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRN 221
+KS LK IEKAI+ SDLG+ P NDG +RL P+LT +RRKEL+K V K+ E KVAVRN
Sbjct: 70 EKSMLKEIEKAILMSDLGINPTNDGSTVRLVFPELTEDRRKELAKDVKKKGEAAKVAVRN 129
Query: 222 IRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
IRRD A++KL K ++SED +KDL DLQK+TD+Y++KID + + K KE++ V
Sbjct: 130 IRRDGNVAFKKL-KGTEVSEDEIKDLEDDLQKITDKYIEKIDKMVEVKTKEIMTV 183
>gi|283798096|ref|ZP_06347249.1| ribosome recycling factor [Clostridium sp. M62/1]
gi|291074241|gb|EFE11605.1| ribosome recycling factor [Clostridium sp. M62/1]
gi|295091732|emb|CBK77839.1| ribosome recycling factor [Clostridium cf. saccharolyticum K10]
Length = 184
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 127/174 (72%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M+++ D + F+S+R GR+NP +LDK+ V+YYG+P L+ +A I+ P+ + IQP++
Sbjct: 11 KMDKSYDALLNEFSSIRAGRANPHVLDKLRVDYYGAPTPLQQVANISVPEPRMIQIQPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS +K+IEKAI++SDLG+ P NDG VIRL P+LT ERRKEL+K V K+ E KVAVRNI
Sbjct: 71 KSLVKAIEKAILTSDLGINPTNDGSVIRLIFPELTEERRKELAKDVKKKGEGAKVAVRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA ++K++K ++SED++ D +QK+TD+ + KID + K KE++ V
Sbjct: 131 RRDANDTFKKMEKANEISEDDLSDAEEKIQKMTDKMIDKIDKAVETKTKEIMTV 184
>gi|374338507|ref|YP_005095222.1| ribosome recycling factor [Streptococcus macedonicus ACA-DC 198]
gi|372284622|emb|CCF02910.1| Ribosome recycling factor [Streptococcus macedonicus ACA-DC 198]
Length = 185
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/181 (51%), Positives = 127/181 (70%), Gaps = 1/181 (0%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
IEK K R E++ + F+++R GR+N ++LD+I+VEYYG+ L +A I P++
Sbjct: 6 IEK-AKERFEQSHSSLAREFSAIRAGRANASLLDRIQVEYYGAMTPLNQLASITVPEARV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LLI P+DKSSLK IE AI +SDLG+ P NDG VIRL +P LT E RKEL+K V K E
Sbjct: 65 LLISPFDKSSLKDIEHAINASDLGINPANDGSVIRLVIPALTEETRKELAKEVKKAGENA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVA+RNIRRDA+ +K +K K+++ED +K L D+QK TD+ +K ID++ KEKELL+
Sbjct: 125 KVAIRNIRRDAMDEAKKQEKAKEITEDELKVLEKDIQKATDDAVKHIDAMTANKEKELLE 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|374710441|ref|ZP_09714875.1| ribosome recycling factor [Sporolactobacillus inulinus CASD]
Length = 186
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/184 (45%), Positives = 129/184 (70%)
Query: 93 KSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPD 152
++ + KD + RM + + + +VR GR+NP++L+K+ VEYYG+ L +A I P+
Sbjct: 3 QTELFKDAQERMGKAVKAFQRELVTVRAGRANPSLLNKVTVEYYGAETPLNQVASITVPE 62
Query: 153 SSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQA 212
+ LLIQPYD+++L +IEK I+ SDLG+TP NDG+VIR+ +P LT ERR +L K+V K A
Sbjct: 63 ARLLLIQPYDRTALPNIEKGILKSDLGVTPTNDGQVIRIAIPPLTEERRADLVKMVRKMA 122
Query: 213 EEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKE 272
EE K+AVRN+RRDA +K+ K +L++D+V + D+QKLT+E +K +D + KEKE
Sbjct: 123 EEAKIAVRNVRRDANDQVKKMAKNNELTKDDVHEAEDDIQKLTNETIKAVDQLAADKEKE 182
Query: 273 LLKV 276
++ +
Sbjct: 183 MMDI 186
>gi|312898662|ref|ZP_07758052.1| ribosome recycling factor [Megasphaera micronuciformis F0359]
gi|310620581|gb|EFQ04151.1| ribosome recycling factor [Megasphaera micronuciformis F0359]
Length = 186
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/175 (48%), Positives = 133/175 (76%)
Query: 102 ARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPY 161
A+ ++TI+ + N +S+RTGR++ ++LD++ V+YYG+P + +A ++ P+ + I P+
Sbjct: 12 AKADKTIENFKRNLSSIRTGRASTSLLDRVSVDYYGTPTPVNQVANVSAPEPRLITISPW 71
Query: 162 DKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRN 221
+++ L IEKAI+ SDLG+ PNNDG +IRL +PQLT ERRKELSK V K+AE+ KVAVRN
Sbjct: 72 ERTMLGEIEKAILKSDLGLNPNNDGTIIRLEIPQLTEERRKELSKKVGKEAEDAKVAVRN 131
Query: 222 IRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
IRRD+ A +K +K+K+++ED+ K+ + +QK+TD +K+ID I +KEKE+++V
Sbjct: 132 IRRDSNDAVKKSEKKKEITEDDSKEAQTKIQKITDAKIKQIDEIKDKKEKEVMEV 186
>gi|291547840|emb|CBL20948.1| ribosome recycling factor [Ruminococcus sp. SR1/5]
Length = 183
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 129/174 (74%), Gaps = 1/174 (0%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +T++ + + ++R GR+NP +LDK+ V+YYG+P L+ +A I+ P++ + IQP++
Sbjct: 11 KMGKTLNALESELTTIRAGRANPHILDKLTVDYYGAPTPLQQVANISVPEARMIQIQPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
S +K+IEKAI+ SDLG+ P+NDG++IRL P+LT ERRKEL K V K+ E KVAVRNI
Sbjct: 71 SSMIKAIEKAILCSDLGLNPSNDGKMIRLVFPELTEERRKELVKDVKKKGEGAKVAVRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA A++KL K+ +SED +K+L +QKLTD+Y+K++D + K KE+L V
Sbjct: 131 RRDANDAFKKLAKQ-DVSEDEIKELEDQIQKLTDKYIKEVDKAIENKSKEILTV 183
>gi|282850149|ref|ZP_06259528.1| ribosome recycling factor [Veillonella parvula ATCC 17745]
gi|294791801|ref|ZP_06756949.1| ribosome recycling factor [Veillonella sp. 6_1_27]
gi|416998745|ref|ZP_11939414.1| ribosome recycling factor [Veillonella parvula ACS-068-V-Sch12]
gi|282579642|gb|EFB85046.1| ribosome recycling factor [Veillonella parvula ATCC 17745]
gi|294457031|gb|EFG25393.1| ribosome recycling factor [Veillonella sp. 6_1_27]
gi|333976898|gb|EGL77757.1| ribosome recycling factor [Veillonella parvula ACS-068-V-Sch12]
Length = 186
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 129/174 (74%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM ++I+ ++ F S+RTGR++ A+LDK+ V+YYGSP + +A I+ P+ ++I P+D
Sbjct: 13 RMNKSIEALKHEFASIRTGRASVALLDKVMVDYYGSPSPINQVANISVPEPRMIVIAPWD 72
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+ + +IEKAI+ SDLG+ P NDG IRL++PQLT ERRKE+ KVV K+AE+ KVAVRNI
Sbjct: 73 KTMIGAIEKAILQSDLGLNPGNDGAQIRLSIPQLTEERRKEIVKVVHKKAEDAKVAVRNI 132
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD +A +K +K K ++ED+ KD +QKLTD +K+ID + KEK++L+V
Sbjct: 133 RRDVNEALKKEEKAKTITEDDAKDGLDQIQKLTDAKVKQIDELKAVKEKDVLEV 186
>gi|299534751|ref|ZP_07048081.1| ribosome recycling factor [Lysinibacillus fusiformis ZC1]
gi|424737078|ref|ZP_18165534.1| ribosome recycling factor [Lysinibacillus fusiformis ZB2]
gi|298729839|gb|EFI70384.1| ribosome recycling factor [Lysinibacillus fusiformis ZC1]
gi|422948910|gb|EKU43286.1| ribosome recycling factor [Lysinibacillus fusiformis ZB2]
Length = 185
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/176 (48%), Positives = 126/176 (71%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +M +TI S+R GR+N ++LD+I V+YYG+ + +A ++ P++ L+I P
Sbjct: 10 KEKMNKTIAAFSRELASIRAGRANASLLDRISVDYYGAATPINQLAGVSIPEARLLVITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDKS L IEKAI+ SD+G+TP NDG VIRL +P LT ERRK+L K V K+AE+ K+AVR
Sbjct: 70 YDKSILGDIEKAIMKSDIGITPTNDGSVIRLMIPALTEERRKDLVKQVKKEAEDAKIAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N+RRDA +KL+K +++ED+++ D+QKLTDE++ K+D + K KEKE+L+V
Sbjct: 130 NVRRDANDDLKKLEKAGEITEDDLRGYGEDIQKLTDEFIVKVDQVAKDKEKEILEV 185
>gi|210622737|ref|ZP_03293329.1| hypothetical protein CLOHIR_01277 [Clostridium hiranonis DSM 13275]
gi|210154069|gb|EEA85075.1| hypothetical protein CLOHIR_01277 [Clostridium hiranonis DSM 13275]
Length = 185
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/181 (45%), Positives = 136/181 (75%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
+ + ++ +M+ TI+ ++ F ++R GR+N AMLDK+ V+YYG+ + +A I+ P+ +
Sbjct: 5 VHEQLEQKMDATIEALKFEFGTIRAGRANAAMLDKVRVDYYGTLTPINQMAAISVPEPRT 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L+I P+DKSS+ IEKAI +SD+G+TP+NDG VIRL++P LT ERRKEL+K K +E+
Sbjct: 65 LMITPWDKSSMHEIEKAIANSDVGLTPSNDGSVIRLSVPALTEERRKELAKKAHKASEDF 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KV +RN RRDA +K++K +++ED +K + ++QK+TD+Y+K+IDS+Y +KEK++++
Sbjct: 125 KVRIRNERRDANDKLKKIEKAGEITEDELKKATEEVQKITDKYIKEIDSLYAKKEKDIME 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|323489579|ref|ZP_08094806.1| ribosome recycling factor [Planococcus donghaensis MPA1U2]
gi|323396710|gb|EGA89529.1| ribosome recycling factor [Planococcus donghaensis MPA1U2]
Length = 185
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/182 (46%), Positives = 131/182 (71%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
S+ + +++M I + S+R GR+ P++LDK+ ++YYGSP + +A I+ P++
Sbjct: 4 SVMNETQSKMNNAIQAFSRDLASIRAGRATPSILDKLTIDYYGSPTPVNQVAGISIPEAR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
++IQPYDKS L IEKAI+ SDLG++P+NDG VIRL +P LT ERRK+L K V K+AEE
Sbjct: 64 LIMIQPYDKSVLGDIEKAILKSDLGLSPSNDGSVIRLAVPALTEERRKDLVKQVKKEAEE 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
K+ +RNIRRDA ++KL+K+ +++ D+++ S D+QKLTD+ + KID + K KEK ++
Sbjct: 124 AKIGIRNIRRDANDEFKKLEKKSEITVDDLRGYSDDVQKLTDDNIAKIDEMAKDKEKGIM 183
Query: 275 KV 276
+V
Sbjct: 184 EV 185
>gi|78045140|ref|YP_360604.1| ribosome recycling factor [Carboxydothermus hydrogenoformans
Z-2901]
gi|123575922|sp|Q3AB80.1|RRF_CARHZ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|77997255|gb|ABB16154.1| ribosome recycling factor [Carboxydothermus hydrogenoformans
Z-2901]
Length = 185
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/182 (47%), Positives = 131/182 (71%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
I K+ + M++ I++++ F ++R GR+ PA+L+K+ VEYYG+ + + +A I+ P+
Sbjct: 4 DILKEAQDHMQKAIEVLKKEFATMRVGRATPALLEKVVVEYYGTQMPVNQLATISAPEPR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
L+IQP+DK +L +IEKAI+ SDLG+TP NDG VIRL +P LT ERR+EL KV K+AEE
Sbjct: 64 LLVIQPWDKGALGAIEKAILKSDLGITPTNDGSVIRLAIPPLTQERRQELVKVARKKAEE 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
+VA+RNIRRDA + L+K+K +SED K ++QKLTD+++K +D + K KE E+L
Sbjct: 124 ARVAIRNIRRDANDRIKDLEKDKVISEDEGKRGQDEVQKLTDKFIKTVDELLKAKEDEIL 183
Query: 275 KV 276
+
Sbjct: 184 SI 185
>gi|312864198|ref|ZP_07724432.1| ribosome recycling factor [Streptococcus vestibularis F0396]
gi|322517322|ref|ZP_08070197.1| ribosome recycling factor [Streptococcus vestibularis ATCC 49124]
gi|311100199|gb|EFQ58408.1| ribosome recycling factor [Streptococcus vestibularis F0396]
gi|322124019|gb|EFX95572.1| ribosome recycling factor [Streptococcus vestibularis ATCC 49124]
Length = 185
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 90/181 (49%), Positives = 125/181 (69%), Gaps = 1/181 (0%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
IEK K R + + + F ++R GR+N ++LD+I VEYYG+P L +A I P++
Sbjct: 6 IEK-AKERFAHSHESLAREFGAIRAGRANASLLDRITVEYYGAPTPLNQLASITVPEARV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LLI P+DK S+ IE+AI SDLG+ P NDG V+RL +P LT E RKEL+K V K E
Sbjct: 65 LLISPFDKGSIADIERAINESDLGINPANDGSVVRLVIPALTEETRKELAKEVKKVGENA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
K+A+RNIRRDA+ +K +K+K+++ED +K L D+QK TD+ +KKIDS+ +KEKELL
Sbjct: 125 KIAIRNIRRDAMDEAKKQEKDKEITEDQLKALEKDIQKATDDAVKKIDSMTAEKEKELLT 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|229086377|ref|ZP_04218553.1| Ribosome-recycling factor [Bacillus cereus Rock3-44]
gi|228696893|gb|EEL49702.1| Ribosome-recycling factor [Bacillus cereus Rock3-44]
Length = 185
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 125/174 (71%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+ME+ + SVR GR++ + LDK++V+YYG+P + +A I P++ L+IQPYD
Sbjct: 12 KMEKAVAAYSRELASVRAGRASASALDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+S+ IEKAI+ +DLG+ P+NDG VIR+ P LT ERRK+L K V K AEE KVAVRN+
Sbjct: 72 KTSIGDIEKAILKADLGLNPSNDGSVIRIAFPALTEERRKDLVKTVKKYAEEAKVAVRNV 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA +KL+K +++ED+++ + D+QK TD+Y+ K+D I K KEKE+++V
Sbjct: 132 RRDANDDLKKLEKASEITEDDLRGYAEDIQKETDKYIAKVDEIAKNKEKEIMEV 185
>gi|255994878|ref|ZP_05428013.1| ribosome recycling factor [Eubacterium saphenum ATCC 49989]
gi|255993591|gb|EEU03680.1| ribosome recycling factor [Eubacterium saphenum ATCC 49989]
Length = 190
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 90/188 (47%), Positives = 133/188 (70%)
Query: 89 IEAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQI 148
+E E I + K + E+TI ++ NSVR GR+NP++LD+I V+YYG+P LK+IA I
Sbjct: 3 MEDEMKEIIDNFKEKGEKTISLLTGELNSVRAGRANPSLLDQIRVDYYGTPTPLKNIANI 62
Query: 149 NTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 208
+ PD SL+I P+D S++K I KAI S+LG+ P +DG+ IRL +PQLT ERRKE++K+V
Sbjct: 63 SVPDPKSLMISPFDPSAIKEIIKAINESELGINPLDDGKNIRLKVPQLTEERRKEITKMV 122
Query: 209 AKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 268
+ ++ K+A+RN+RRDA +K +K +SED +K + D+Q TDE+ KKID + K+
Sbjct: 123 KQITDDAKIAIRNLRRDANDHLKKAEKNGDISEDELKGDTKDIQTKTDEFTKKIDGMLKE 182
Query: 269 KEKELLKV 276
KEKE++ V
Sbjct: 183 KEKEIMSV 190
>gi|239626444|ref|ZP_04669475.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239516590|gb|EEQ56456.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 183
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 133/174 (76%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +T+D++ ++F ++R GR+NP +LDK++V+YYG+P L+ + ++ P++ ++IQP++
Sbjct: 10 KMNKTLDVLLSDFGTIRAGRANPHVLDKLKVDYYGTPTPLQQVGNVSVPEARMIVIQPWE 69
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS LK IEKAI++S+LG+ P NDG IRL P++T +RRKE+SK V K+ E KVA+RNI
Sbjct: 70 KSLLKPIEKAILTSELGINPTNDGNCIRLVFPEMTEDRRKEVSKDVKKKGEGAKVALRNI 129
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA +A++K +K +SED++K+ + +QKLTD+ ++K+D ++K KE++ V
Sbjct: 130 RRDANEAFKKAEKAGDMSEDDLKEATEKMQKLTDKMVEKVDKAVEEKTKEIMTV 183
>gi|94986827|ref|YP_594760.1| ribosome recycling factor [Lawsonia intracellularis PHE/MN1-00]
gi|442555658|ref|YP_007365483.1| ribosome recycling factor [Lawsonia intracellularis N343]
gi|190360249|sp|Q1MRD7.1|RRF_LAWIP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|94731076|emb|CAJ54439.1| Ribosome recycling factor [Lawsonia intracellularis PHE/MN1-00]
gi|441493105|gb|AGC49799.1| ribosome recycling factor [Lawsonia intracellularis N343]
Length = 188
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/188 (45%), Positives = 136/188 (72%)
Query: 89 IEAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQI 148
++ +K I D + RM + I + F +RTGR++ +++D I+V+YYG+P + +A I
Sbjct: 1 MDTDKDKIFLDSQERMVKAITSLEKEFTKLRTGRASTSIVDTIKVDYYGTPTPINQLASI 60
Query: 149 NTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 208
PDSSS+ IQP+DK++ IEKAI+ S+LG+TP NDG++IR+TLP LT +RRK+L K+
Sbjct: 61 AIPDSSSITIQPWDKTAFNPIEKAILKSELGLTPINDGKIIRITLPPLTEDRRKDLVKLA 120
Query: 209 AKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 268
K E+ K+A+RNIRRDA + ++L+K K +SED +K + D+QK+TD Y+K++++ K
Sbjct: 121 RKYGEDTKIAIRNIRRDANEQLKRLEKNKFISEDELKGFTEDIQKMTDNYIKEVETHCKT 180
Query: 269 KEKELLKV 276
KEKE++++
Sbjct: 181 KEKEIIEI 188
>gi|226313032|ref|YP_002772926.1| ribosome recycling factor [Brevibacillus brevis NBRC 100599]
gi|254809495|sp|C0ZF63.1|RRF_BREBN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|226095980|dbj|BAH44422.1| ribosome recycling factor [Brevibacillus brevis NBRC 100599]
Length = 185
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 129/178 (72%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D++ RM + I+ ++ + +S+R GR+NPAMLD++ V+YYG+P + +A I+ P+ L I
Sbjct: 8 DMEDRMNKAINALKRDLSSLRAGRANPAMLDRVTVDYYGTPTPISQLANISVPEPRMLTI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+DK++LK I++A+ SDLG++P+NDG +IRL +P LT ERRKEL K+ K EE KVA
Sbjct: 68 QPWDKTALKEIDRALQQSDLGISPSNDGVIIRLIIPPLTEERRKELVKLAGKGGEEAKVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA +KL+K +SED+ + +QK TD+++ ++D I K KEK++L+V
Sbjct: 128 IRNIRRDANDEIKKLEKAATISEDDSRRHQETIQKTTDKFIAEVDKIVKDKEKDILEV 185
>gi|311030097|ref|ZP_07708187.1| ribosome recycling factor [Bacillus sp. m3-13]
Length = 185
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 127/176 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K RME+ + ++R GR++ A+LDK+ V+YYG+P + +A +N P++ L++QP
Sbjct: 10 KDRMEKAVQAYSRELATIRAGRASAALLDKVTVDYYGAPTPVNQLASLNVPEARLLVVQP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+SL IEKAI+ +DLG+ P+NDG VIR+++P LT ERRKEL K + K +EE KV +R
Sbjct: 70 YDKTSLGDIEKAIIKADLGLNPSNDGTVIRISIPALTEERRKELVKQIKKISEEAKVGIR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRRD +KL+K +++ED ++ + D+QK TD ++ K+D++ K+KEKE+++V
Sbjct: 130 NIRRDGNDDLKKLEKNGEITEDELRGYTDDIQKQTDAFIAKVDTVTKEKEKEIMEV 185
>gi|429220984|ref|YP_007182628.1| ribosome recycling factor [Deinococcus peraridilitoris DSM 19664]
gi|429131847|gb|AFZ68862.1| ribosome recycling factor [Deinococcus peraridilitoris DSM 19664]
Length = 182
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 83/180 (46%), Positives = 130/180 (72%), Gaps = 3/180 (1%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
SI D +ARM++ I+ + +N + +RTGR+NP +L KI+VEYYGS + L +A + TPD+
Sbjct: 5 SIFGDARARMQKAIEALESNLSVLRTGRANPGILKKIQVEYYGSTMPLDQVASVTTPDAR 64
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
+LL+ P+D+ +L IE+AI SDLG+ PNN G+ I +TLP LT ERRK+L K AE+
Sbjct: 65 TLLVTPWDRGALGHIERAIRDSDLGLNPNNKGDAIFITLPVLTEERRKDLVKTARTYAED 124
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
GK+AVRN+R+ AL E ++K++ + ED +K ++QKLTDE++ +++ + ++KE+E+L
Sbjct: 125 GKIAVRNVRKSAL---EDIKKQEGVGEDEIKRAEGEVQKLTDEFVNRVEEVLERKEQEIL 181
>gi|409386899|ref|ZP_11239237.1| Ribosome recycling factor [Lactococcus raffinolactis 4877]
gi|399205887|emb|CCK20152.1| Ribosome recycling factor [Lactococcus raffinolactis 4877]
Length = 185
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 127/174 (72%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM+++ID ++ F S+R GR+N ++LD+I V+YYG+P L +A I+ P++ LLI P+D
Sbjct: 12 RMKQSIDSLQREFGSIRAGRANASLLDRITVDYYGAPTPLNQLAGISVPEARVLLITPFD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+ +K IE A+ +SDLG+ P +DG VIRL +P LT ERRKEL+K V K AE GKVA+RNI
Sbjct: 72 KTVIKDIEAALNASDLGINPQSDGNVIRLVIPALTEERRKELAKEVKKTAEGGKVAIRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
R+DA+ +K +K K+++ED +K L ++QK+TD +K+ID KE+ELL V
Sbjct: 132 RKDAMNDAKKSEKAKEITEDELKTLEKEIQKVTDAAVKEIDQHTANKEEELLTV 185
>gi|71903032|ref|YP_279835.1| ribosome recycling factor [Streptococcus pyogenes MGAS6180]
gi|123640384|sp|Q48UX6.1|RRF_STRPM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|71802127|gb|AAX71480.1| ribosome recycling factor [Streptococcus pyogenes MGAS6180]
Length = 185
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/162 (52%), Positives = 121/162 (74%)
Query: 115 FNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIV 174
+ S+R GR+N ++LD+I+V+YYG+P L +A I P++ LLI P+DKSS+K IE+A+
Sbjct: 24 YASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERALN 83
Query: 175 SSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQ 234
+SDLG+TP NDG VIRL +P LT E RKEL+K V K E K+A+RNIRRDA+ +K +
Sbjct: 84 ASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDDAKKQE 143
Query: 235 KEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
K K+++ED +K L D+QK+TD+ +K+ID + +KEKELL V
Sbjct: 144 KAKEITEDELKTLEKDIQKVTDDAIKEIDRMTAEKEKELLSV 185
>gi|300173184|ref|YP_003772350.1| ribosome Recycling Factor, RRF [Leuconostoc gasicomitatum LMG
18811]
gi|333397948|ref|ZP_08479761.1| ribosome Recycling Factor, RRF [Leuconostoc gelidum KCTC 3527]
gi|406599853|ref|YP_006745199.1| ribosome Recycling Factor, RRF [Leuconostoc gelidum JB7]
gi|299887563|emb|CBL91531.1| Ribosome Recycling Factor, RRF [Leuconostoc gasicomitatum LMG
18811]
gi|406371388|gb|AFS40313.1| ribosome Recycling Factor, RRF [Leuconostoc gelidum JB7]
Length = 181
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 87/178 (48%), Positives = 130/178 (73%), Gaps = 3/178 (1%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D K RM+ D ++ S+RTGR+NP +LD+IEVEYYG+ LK +A I+ P++ LLI
Sbjct: 7 DAKTRMQGAQDALKRELGSIRTGRANPHILDRIEVEYYGAMTPLKQVASISVPEARILLI 66
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
P+DKS+L+ I +AI SDLG+ P +DG ++RL +PQ+T E RK+L+K V +AE+ KV+
Sbjct: 67 TPFDKSALEEIVRAINMSDLGLNPASDGNIVRLAIPQMTEEGRKDLAKQVKAEAEKAKVS 126
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RN+RRDA+ + ++K+K+L ED+V++ D+QKLTD+ +K ID I +KEKELL +
Sbjct: 127 IRNVRRDAM---DTVKKDKELPEDDVRNAEDDVQKLTDDNIKAIDVIAAEKEKELLTI 181
>gi|328957401|ref|YP_004374787.1| ribosome recycling factor [Carnobacterium sp. 17-4]
gi|328673725|gb|AEB29771.1| ribosome recycling factor [Carnobacterium sp. 17-4]
Length = 185
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 86/183 (46%), Positives = 130/183 (71%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + +K +M +T ++ ++R GR+N +LD+I V YYG+P LK +AQI+ P+
Sbjct: 3 NAILETMKEKMVKTEGALQRELGTIRAGRANAGLLDRINVVYYGAPTPLKQLAQISIPEP 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
L++ P+DK+S+ IEKAI+ SDLG++P NDG VIRL +PQLT ERRKEL+K V K+AE
Sbjct: 63 RVLMVTPFDKTSISDIEKAIMQSDLGISPANDGNVIRLVIPQLTEERRKELAKKVGKEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
KV+VRNIRR+A+ +K +K ++++D+++ D+QK+T+ +K ID I KEKEL
Sbjct: 123 NAKVSVRNIRREAIDELKKAEKNNEITQDDLRTFEEDIQKITNTSVKNIDGIAADKEKEL 182
Query: 274 LKV 276
L V
Sbjct: 183 LDV 185
>gi|383791171|ref|YP_005475745.1| ribosome recycling factor [Spirochaeta africana DSM 8902]
gi|383107705|gb|AFG38038.1| ribosome recycling factor [Spirochaeta africana DSM 8902]
Length = 182
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 87/179 (48%), Positives = 129/179 (72%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
KD ++RM+++I + F ++RTGR++ A+ DKI VEYYG+P L +A ++TP++ ++
Sbjct: 4 KDAESRMKKSIKALEEEFAAIRTGRASTALFDKIMVEYYGTPTPLNQVATVSTPEARLVV 63
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+DKS+L IEKAI S+L + PNNDG+VIR+ +P LT +RRKE+ K + AE+ KV
Sbjct: 64 IQPWDKSALGDIEKAIQKSELSLNPNNDGKVIRINIPPLTEDRRKEIVKSAKQIAEQAKV 123
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RNIRRDA ++ QK+ ++SED K L D+QKLTD Y K+I + KEKE+L++
Sbjct: 124 AIRNIRRDANDQLKQQQKDGEISEDEEKRLQDDVQKLTDTYTKQISQMLDAKEKEILEI 182
>gi|317484674|ref|ZP_07943575.1| ribosome recycling factor [Bilophila wadsworthia 3_1_6]
gi|316924030|gb|EFV45215.1| ribosome recycling factor [Bilophila wadsworthia 3_1_6]
Length = 186
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 83/185 (44%), Positives = 131/185 (70%)
Query: 92 EKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTP 151
+K S+ D + RM++ + + +F+ +RTGR++ ++D I+V+YYG+P + +A + P
Sbjct: 2 DKESVLLDSEDRMDKALGALDRDFSRLRTGRASTGLVDNIKVDYYGTPTPISQLASVAIP 61
Query: 152 DSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 211
DS ++ IQP+D+ + +EKAI+ SDLG+TP NDG++IR+++P LT +RRKEL K+ K
Sbjct: 62 DSRTITIQPWDRGAFAGVEKAILKSDLGLTPVNDGKIIRISIPPLTEDRRKELGKLARKS 121
Query: 212 AEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEK 271
EE KVAVRN+RRDA +KL+K+K +SED +K + D+QKLTD Y+ K+D KEK
Sbjct: 122 GEEAKVAVRNVRRDANDQLKKLEKDKAISEDELKKATDDVQKLTDRYVAKVDEKCAAKEK 181
Query: 272 ELLKV 276
E++ +
Sbjct: 182 EIMDL 186
>gi|117928746|ref|YP_873297.1| ribosome recycling factor [Acidothermus cellulolyticus 11B]
gi|166230403|sp|A0LV51.1|RRF_ACIC1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|117649209|gb|ABK53311.1| ribosome recycling factor [Acidothermus cellulolyticus 11B]
Length = 185
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 121/174 (69%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+ME+ ++ R NF ++RTGR+NPA+ KI VEYYG+P L +A D+ ++I PYD
Sbjct: 12 KMEKATNVARENFAAIRTGRANPALFSKITVEYYGTPTPLNQLASFTVADARLIVIHPYD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K SL++IEKAI SDLG+ P +DG VIR+ +P LT ERR++ K+ +AEE +VA+RNI
Sbjct: 72 KGSLRAIEKAIRDSDLGVNPTDDGSVIRVAIPPLTEERRRDYIKMARHEAEEARVAIRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RR A A +KLQK+ ++ ED+V+ +L +LT +Y+ ID + K KE ELL+V
Sbjct: 132 RRHAKDALDKLQKDGEVGEDDVRRAEKELDELTHKYVAHIDEMLKHKEAELLEV 185
>gi|269797920|ref|YP_003311820.1| ribosome recycling factor [Veillonella parvula DSM 2008]
gi|294793662|ref|ZP_06758799.1| ribosome recycling factor [Veillonella sp. 3_1_44]
gi|269094549|gb|ACZ24540.1| ribosome recycling factor [Veillonella parvula DSM 2008]
gi|294455232|gb|EFG23604.1| ribosome recycling factor [Veillonella sp. 3_1_44]
Length = 186
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 129/174 (74%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM ++I+ ++ F S+RTGR++ A+LDK+ V+YYGSP + +A I+ P+ ++I P+D
Sbjct: 13 RMNKSIEALKHEFASIRTGRASVALLDKVMVDYYGSPSPINQVANISVPEPRMIVIAPWD 72
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+ + +IEKAI+ SDLG+ P NDG IRL++PQLT ERRKE+ KVV K+AE+ KVAVRNI
Sbjct: 73 KTMIGAIEKAILQSDLGLNPGNDGAQIRLSIPQLTEERRKEIVKVVHKKAEDAKVAVRNI 132
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD +A +K +K K ++ED+ KD +QKLTD +K+ID + KEK++L+V
Sbjct: 133 RRDVNEALKKEEKAKTITEDDAKDGLDQIQKLTDAKVKQIDELKVVKEKDVLEV 186
>gi|323142320|ref|ZP_08077152.1| ribosome recycling factor [Phascolarctobacterium succinatutens YIT
12067]
gi|322413204|gb|EFY04091.1| ribosome recycling factor [Phascolarctobacterium succinatutens YIT
12067]
Length = 187
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 131/177 (74%)
Query: 100 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQ 159
++++ME+++ +R + S+R GR+ P++L+K+ V+YYGSP + +A + P+ ++IQ
Sbjct: 11 IESKMEKSVAALRVDLASLRAGRATPSLLEKVMVDYYGSPTPVTQVASVTVPEPRMIVIQ 70
Query: 160 PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAV 219
P++K+ LK IEKAI+ SDLG+ PN+DG IRL LPQLT ERRK+L KVV K+AEE +V V
Sbjct: 71 PWEKNILKDIEKAIMKSDLGLNPNSDGICIRLNLPQLTEERRKDLVKVVHKKAEEYRVVV 130
Query: 220 RNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RN+RRDA A +K +K K+++ED K + +QKLTD+ MK+ID+ KEKE+++V
Sbjct: 131 RNLRRDANDAIKKTEKAKEITEDEAKKGTEKVQKLTDKVMKEIDAAAANKEKEVMEV 187
>gi|386362238|ref|YP_006071569.1| ribosome recycling factor [Streptococcus pyogenes Alab49]
gi|350276647|gb|AEQ24015.1| ribosome recycling factor [Streptococcus pyogenes Alab49]
Length = 185
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 85/162 (52%), Positives = 121/162 (74%)
Query: 115 FNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIV 174
++S+R GR+N ++LD+I+V+YYG+P L +A I P++ LLI P+DKSS+K IE+A+
Sbjct: 24 YSSIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERALN 83
Query: 175 SSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQ 234
+SDLG+TP NDG VIRL +P LT E RKEL+K V K E K+A+RNIRRDA+ +K +
Sbjct: 84 ASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDDAKKQE 143
Query: 235 KEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
K K+++ED +K L D+QK TD+ +K+ID + +KEKELL V
Sbjct: 144 KAKEITEDELKTLEKDIQKATDDAIKEIDRMTAEKEKELLSV 185
>gi|456012667|gb|EMF46355.1| Ribosome recycling factor [Planococcus halocryophilus Or1]
Length = 185
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 85/182 (46%), Positives = 130/182 (71%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
S+ + + +M I + S+R GR+ P++LDK+ ++YYGSP + +A I+ P++
Sbjct: 4 SVMNETETKMSSAIQAFSRDLASIRAGRATPSILDKLSIDYYGSPTPVNQVAGISIPEAR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
++IQPYDKS L IEKAI+ SDLG++P+NDG VIRL +P LT ERRK+L K V K+AEE
Sbjct: 64 LIMIQPYDKSVLGDIEKAILKSDLGLSPSNDGSVIRLAVPALTEERRKDLVKQVKKEAEE 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
K+ +RNIRRDA ++KL+K+ +++ D+++ S D+QKLTD+ + KID + K KEK ++
Sbjct: 124 AKIGIRNIRRDANDEFKKLEKKSEITVDDLRGYSDDVQKLTDDNIAKIDEMAKDKEKGIM 183
Query: 275 KV 276
+V
Sbjct: 184 EV 185
>gi|320527474|ref|ZP_08028655.1| ribosome recycling factor [Solobacterium moorei F0204]
gi|320132187|gb|EFW24736.1| ribosome recycling factor [Solobacterium moorei F0204]
Length = 182
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 126/174 (72%), Gaps = 3/174 (1%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++ ID +++ N+VRTG +N MLD++EV+YYGSP L IA ++ + +L+I+PYD
Sbjct: 12 KMDKVIDHLQSELNTVRTGAANVKMLDRVEVDYYGSPTPLNQIAALSVSEGRTLVIKPYD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
SSLK+IE A +DLG+ P+NDG VIRLT+PQLT E RKE++K V K EE K+ +RNI
Sbjct: 72 PSSLKAIEHACNEADLGIAPSNDGTVIRLTVPQLTGETRKEMTKKVDKMGEECKIQIRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA+ ++K+K + ED KD +++QKLTD+Y+KKID + K E+LKV
Sbjct: 132 RRDAMSV---VKKDKTMDEDIQKDCENEIQKLTDKYIKKIDDLAAAKSAEVLKV 182
>gi|15895066|ref|NP_348415.1| ribosome recycling factor [Clostridium acetobutylicum ATCC 824]
gi|337737007|ref|YP_004636454.1| ribosome recycling factor [Clostridium acetobutylicum DSM 1731]
gi|384458515|ref|YP_005670935.1| ribosome recycling factor [Clostridium acetobutylicum EA 2018]
gi|22001946|sp|Q97I63.1|RRF_CLOAB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|15024762|gb|AAK79755.1|AE007688_4 Ribosome recycling factor [Clostridium acetobutylicum ATCC 824]
gi|325509204|gb|ADZ20840.1| ribosome recycling factor [Clostridium acetobutylicum EA 2018]
gi|336292659|gb|AEI33793.1| ribosome recycling factor [Clostridium acetobutylicum DSM 1731]
Length = 185
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 132/183 (72%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S I K+++ +M ++I ++ S++ GR+NPAMLD+IEV+YYG+ L +A I+ P+S
Sbjct: 3 SDIIKELEEKMTKSISALKKELTSMKAGRANPAMLDRIEVDYYGTMTPLNQLANISVPES 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
L+IQP+DKS++KSIEKAI+ SDLG+ P+NDG +RL +P+LT E RK + K V K E
Sbjct: 63 RVLMIQPWDKSAMKSIEKAILISDLGLNPSNDGTTMRLVIPELTEETRKNIVKNVKKAGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+GKVA+R IRRDA + L+K+ ++ED +K +D+QK TD Y+K+ID + + KEKE+
Sbjct: 123 DGKVALRAIRRDANDKVKSLKKDNSITEDEMKSAENDIQKKTDSYVKEIDKMVEAKEKEI 182
Query: 274 LKV 276
+ +
Sbjct: 183 MSI 185
>gi|332523063|ref|ZP_08399315.1| ribosome recycling factor [Streptococcus porcinus str. Jelinkova
176]
gi|332314327|gb|EGJ27312.1| ribosome recycling factor [Streptococcus porcinus str. Jelinkova
176]
Length = 185
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 125/174 (71%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
R E++ + + S+R GR+N ++LD+I+V+YYG+P L ++ I P++ LLI P+D
Sbjct: 12 RFEQSFQSLSREYASIRAGRANASLLDRIQVDYYGAPTPLNQLSSITVPEARVLLISPFD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+S+K IE+AI +SDLG+TP NDG VIRL +P LT E RK L+K V K E KVA+RNI
Sbjct: 72 KNSIKDIERAINASDLGITPANDGSVIRLVIPALTEETRKNLAKEVKKVGENQKVAIRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA+ +K +K+K++SED +K L D+QK TD+ +K ID++ +KEKELL V
Sbjct: 132 RRDAMDEAKKQEKDKEISEDELKTLEKDIQKATDDAIKHIDAMTAEKEKELLSV 185
>gi|366166649|ref|ZP_09466404.1| ribosome recycling factor [Acetivibrio cellulolyticus CD2]
Length = 185
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 81/179 (45%), Positives = 129/179 (72%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K ++ +M++TI++++ VR GR+NPA+LDK+ V+YYG+P + IA ++ P+ ++
Sbjct: 7 KSIEEKMKKTINVLKDELTGVRAGRANPAILDKLTVDYYGTPTPINQIASVSVPEGRVIM 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP++ +K IEK I SD+G+ PNNDG+VIRL P LT ERRKEL+KVV K E+ KV
Sbjct: 67 IQPWEAKMIKEIEKEIQKSDIGINPNNDGKVIRLVFPMLTEERRKELTKVVKKYGEDAKV 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+R IRRD ++ + L+K+ +L+ED++K D+Q +TD+Y+ +ID + + K+ E+L+V
Sbjct: 127 AIRAIRRDGIEHMKTLKKDGELTEDDLKTAEKDIQNMTDKYIAEIDKVVELKDAEILEV 185
>gi|392426776|ref|YP_006467770.1| ribosome recycling factor [Desulfosporosinus acidiphilus SJ4]
gi|391356739|gb|AFM42438.1| ribosome recycling factor [Desulfosporosinus acidiphilus SJ4]
Length = 185
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 84/183 (45%), Positives = 132/183 (72%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S + KD + RM + ++ +R + S+R GR+NP +LDK+ VEYYG+P + +A ++ P+
Sbjct: 3 SEVIKDAEERMHKGVEALRKEYASIRAGRANPNVLDKVMVEYYGAPTPVNQLANVSAPEP 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LLIQP+D++ L +IEKAI+ SDLG+ P++DG VIRL +PQLT+ERR E+ K V K+AE
Sbjct: 63 RMLLIQPWDRTVLPAIEKAILKSDLGLNPSSDGSVIRLLIPQLTAERRTEIVKKVKKEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+ +VAVRN+RRD +K++K+ + SED VK ++QK+TD+ +K+I+ + + KE E+
Sbjct: 123 DARVAVRNVRRDVNDKLKKMEKDHEASEDEVKRAQDEVQKITDKIIKEIEHVMETKESEI 182
Query: 274 LKV 276
+V
Sbjct: 183 TEV 185
>gi|329117138|ref|ZP_08245855.1| ribosome recycling factor [Streptococcus parauberis NCFD 2020]
gi|333904554|ref|YP_004478425.1| ribosome recycling factor [Streptococcus parauberis KCTC 11537]
gi|326907543|gb|EGE54457.1| ribosome recycling factor [Streptococcus parauberis NCFD 2020]
gi|333119819|gb|AEF24753.1| ribosome recycling factor [Streptococcus parauberis KCTC 11537]
gi|456370410|gb|EMF49306.1| Ribosome recycling factor [Streptococcus parauberis KRS-02109]
gi|457095994|gb|EMG26465.1| Ribosome recycling factor [Streptococcus parauberis KRS-02083]
Length = 185
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 85/162 (52%), Positives = 119/162 (73%)
Query: 115 FNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIV 174
+ S+R GR+N ++LD+I+VEYYG+P L +A I P++ L+I P+DKSS+K IE+AI
Sbjct: 24 YASIRAGRANASLLDRIQVEYYGAPTPLNQLASITVPEARVLMISPFDKSSIKDIERAIN 83
Query: 175 SSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQ 234
+SDLG+TP NDG +IRL +P LT E RKEL+K V K E K+A+RNIRRDA+ +K +
Sbjct: 84 ASDLGITPANDGSIIRLVIPALTEETRKELAKEVKKVGESSKIAIRNIRRDAMDDAKKQE 143
Query: 235 KEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
K K+++ED +K L D+QK TD+ +K ID + KEKELL+V
Sbjct: 144 KAKEITEDELKSLEKDIQKATDDAIKHIDQMTANKEKELLEV 185
>gi|295696146|ref|YP_003589384.1| ribosome recycling factor [Kyrpidia tusciae DSM 2912]
gi|295411748|gb|ADG06240.1| ribosome recycling factor [Kyrpidia tusciae DSM 2912]
Length = 184
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 86/183 (46%), Positives = 127/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S + K + RM +++ ++ F SVR GR+ P +LDK+ VEYYG+ + + +A I P+
Sbjct: 2 SDLMKQAEERMNKSLQALKKEFASVRAGRATPGLLDKVTVEYYGTSMPIHQLASITAPEP 61
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
L+IQP+DK +L IEKAI+ SDLG+TP NDG+VIRL +PQLT ERR+EL+++V K AE
Sbjct: 62 RLLVIQPWDKGALAEIEKAILKSDLGLTPTNDGQVIRLAIPQLTQERRQELARMVRKLAE 121
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
E +VA+RNIRR+A K +K+ +SED + L +Q LTD ++++ID + KEKE+
Sbjct: 122 ESRVAIRNIRREANDEIRKSEKDGSVSEDEGRRLQERIQGLTDRFIEEIDRLLAAKEKEI 181
Query: 274 LKV 276
+V
Sbjct: 182 TEV 184
>gi|283769070|ref|ZP_06341976.1| ribosome recycling factor [Bulleidia extructa W1219]
gi|283104427|gb|EFC05804.1| ribosome recycling factor [Bulleidia extructa W1219]
Length = 182
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 128/174 (73%), Gaps = 3/174 (1%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++ +D +++ N+VRTG +N ++D++E +YYG+P L IA I+ + +++I+PYD
Sbjct: 12 KMDKVMDHLQSELNTVRTGMANAKLMDRVEADYYGTPTPLNQIAGISVSEGRTIVIKPYD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
SSLK IE+A ++LGM P NDG VIRLT+PQLT E RKE+SK V + AEE K+ +RNI
Sbjct: 72 PSSLKEIERACNEANLGMAPQNDGTVIRLTVPQLTGETRKEMSKKVGQIAEESKIQIRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA+ ++K+K++ ED KD+ +++QKLTD+Y+KKID K KE E+LKV
Sbjct: 132 RRDAMNV---VKKDKEMDEDMQKDMENEIQKLTDKYVKKIDEQAKAKEAEVLKV 182
>gi|116620031|ref|YP_822187.1| ribosome recycling factor [Candidatus Solibacter usitatus
Ellin6076]
gi|116223193|gb|ABJ81902.1| ribosome recycling factor [Candidatus Solibacter usitatus
Ellin6076]
Length = 201
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 86/181 (47%), Positives = 129/181 (71%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
+E ++K RME+ + ++ S+RTGR+ ++LD I V+YYG+P L +A ++ P+ +
Sbjct: 20 VEANLKTRMEKAVSDLQHEMASIRTGRATLSLLDHIRVDYYGTPTPLNQVANLHVPEPNL 79
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
+ IQP+D S + +IEK+I +SDLG+ P NDG+VIRL +P LT ERRKEL K + AE
Sbjct: 80 ITIQPWDVSQIGTIEKSIRTSDLGLNPANDGKVIRLPIPPLTEERRKELVKKLHAAAEHH 139
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
+VAVRNIRRD +A +KL K+KK++ED+ K ++QKLTD YM K+D+ K KEKE+++
Sbjct: 140 RVAVRNIRRDGNEAVKKLSKDKKITEDDDKKAHDEIQKLTDLYMGKVDTAAKTKEKEIME 199
Query: 276 V 276
+
Sbjct: 200 I 200
>gi|15674582|ref|NP_268756.1| ribosome recycling factor [Streptococcus pyogenes SF370]
gi|21909863|ref|NP_664131.1| ribosome recycling factor [Streptococcus pyogenes MGAS315]
gi|28896442|ref|NP_802792.1| ribosome recycling factor [Streptococcus pyogenes SSI-1]
gi|50913751|ref|YP_059723.1| ribosome recycling factor [Streptococcus pyogenes MGAS10394]
gi|71910193|ref|YP_281743.1| ribosome recycling factor [Streptococcus pyogenes MGAS5005]
gi|94988011|ref|YP_596112.1| ribosome recycling factor [Streptococcus pyogenes MGAS9429]
gi|94991895|ref|YP_599994.1| ribosome recycling factor [Streptococcus pyogenes MGAS2096]
gi|94993775|ref|YP_601873.1| ribosome recycling factor [Streptococcus pyogenes MGAS10750]
gi|139474297|ref|YP_001129013.1| ribosome recycling factor [Streptococcus pyogenes str. Manfredo]
gi|209558949|ref|YP_002285421.1| ribosome recycling factor [Streptococcus pyogenes NZ131]
gi|306827884|ref|ZP_07461152.1| ribosome recycling factor [Streptococcus pyogenes ATCC 10782]
gi|383479567|ref|YP_005388461.1| ribosome recycling factor protein Frr [Streptococcus pyogenes
MGAS15252]
gi|383493487|ref|YP_005411163.1| ribosome recycling factor protein Frr [Streptococcus pyogenes
MGAS1882]
gi|410680068|ref|YP_006932470.1| ribosome recycling factor [Streptococcus pyogenes A20]
gi|417857398|ref|ZP_12502457.1| ribosome recycling factor [Streptococcus pyogenes HKU
QMH11M0907901]
gi|421892344|ref|ZP_16323022.1| Ribosome recycling factor [Streptococcus pyogenes NS88.2]
gi|57014111|sp|P68903.1|RRF_STRP1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|57014114|sp|Q5XDH3.1|RRF_STRP6 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|166231514|sp|Q1JD58.1|RRF_STRPB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|166231515|sp|Q1JN31.1|RRF_STRPC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|166231516|sp|Q1JI77.1|RRF_STRPD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|166231517|sp|Q1J832.1|RRF_STRPF RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|166231518|sp|A2RG30.1|RRF_STRPG RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|226749943|sp|B5XK64.1|RRF_STRPZ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|342179258|sp|P0DF38.1|RRF_STRP3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|342179259|sp|P0DF39.1|RRF_STRPQ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|13621691|gb|AAK33477.1| putative ribosome recycling factor [Streptococcus pyogenes M1 GAS]
gi|21904050|gb|AAM78934.1| putative ribosome recycling factor [Streptococcus pyogenes MGAS315]
gi|28811693|dbj|BAC64625.1| putative ribosome recycling factor [Streptococcus pyogenes SSI-1]
gi|50902825|gb|AAT86540.1| Ribosome Recycling Factor [Streptococcus pyogenes MGAS10394]
gi|71852975|gb|AAZ50998.1| ribosome recycling factor [Streptococcus pyogenes MGAS5005]
gi|94541519|gb|ABF31568.1| ribosome recycling factor (RRF) [Streptococcus pyogenes MGAS9429]
gi|94543398|gb|ABF33446.1| Ribosome Recycling Factor (RRF) [Streptococcus pyogenes MGAS10270]
gi|94545403|gb|ABF35450.1| Ribosome Recycling Factor (RRF) [Streptococcus pyogenes MGAS2096]
gi|94547283|gb|ABF37329.1| Ribosome Recycling Factor (RRF) [Streptococcus pyogenes MGAS10750]
gi|134272544|emb|CAM30809.1| ribosome recycling factor [Streptococcus pyogenes str. Manfredo]
gi|209540150|gb|ACI60726.1| Ribosome recycling factor [Streptococcus pyogenes NZ131]
gi|304429932|gb|EFM32973.1| ribosome recycling factor [Streptococcus pyogenes ATCC 10782]
gi|378927557|gb|AFC65763.1| ribosome recycling factor protein Frr [Streptococcus pyogenes
MGAS15252]
gi|378929215|gb|AFC67632.1| ribosome recycling factor protein Frr [Streptococcus pyogenes
MGAS1882]
gi|379981900|emb|CCG26744.1| Ribosome recycling factor [Streptococcus pyogenes NS88.2]
gi|387934353|gb|EIK42466.1| ribosome recycling factor [Streptococcus pyogenes HKU
QMH11M0907901]
gi|395453436|dbj|BAM29775.1| ribosome recycling factor [Streptococcus pyogenes M1 476]
gi|409692657|gb|AFV37517.1| ribosome recycling factor [Streptococcus pyogenes A20]
Length = 185
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 85/162 (52%), Positives = 120/162 (74%)
Query: 115 FNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIV 174
+ S+R GR+N ++LD+I+V+YYG+P L +A I P++ LLI P+DKSS+K IE+A+
Sbjct: 24 YASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERALN 83
Query: 175 SSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQ 234
+SDLG+TP NDG VIRL +P LT E RKEL+K V K E K+A+RNIRRDA+ +K +
Sbjct: 84 ASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDDAKKQE 143
Query: 235 KEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
K K+++ED +K L D+QK TD+ +K+ID + +KEKELL V
Sbjct: 144 KAKEITEDELKTLEKDIQKATDDAIKEIDRMTAEKEKELLSV 185
>gi|320547289|ref|ZP_08041581.1| ribosome recycling factor [Streptococcus equinus ATCC 9812]
gi|320448093|gb|EFW88844.1| ribosome recycling factor [Streptococcus equinus ATCC 9812]
Length = 185
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 94/181 (51%), Positives = 125/181 (69%), Gaps = 1/181 (0%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
IEK K R E++ + F S+R GR+N ++LD+I+VEYYG+ L +A I P++
Sbjct: 6 IEK-AKERFEQSHSSLAREFASIRAGRANASLLDRIQVEYYGAMTPLNQLASITVPEARV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LLI P+DKSSLK IE AI +SDLG+ P NDG VIRL +P LT E RK L+K V K E
Sbjct: 65 LLISPFDKSSLKDIEHAINASDLGINPANDGSVIRLVIPALTEETRKALAKDVKKVGENA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVA+RNIRRDA+ +K +K K+++ED +K L D+QK TDE +K ID++ KEKELL+
Sbjct: 125 KVAIRNIRRDAMDEAKKQEKAKEITEDELKVLEKDIQKATDEAVKHIDTMTANKEKELLE 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|251781912|ref|YP_002996214.1| ribosome recycling factor [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|386316441|ref|YP_006012605.1| ribosome recycling factor [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|410494230|ref|YP_006904076.1| ribosome-recycling factor [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|417751597|ref|ZP_12399880.1| ribosome recycling factor [Streptococcus dysgalactiae subsp.
equisimilis SK1249]
gi|417928656|ref|ZP_12572044.1| ribosome recycling factor [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
gi|242390541|dbj|BAH81000.1| ribosome releasing factor [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|323126728|gb|ADX24025.1| ribosome recycling factor [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|333772652|gb|EGL49482.1| ribosome recycling factor [Streptococcus dysgalactiae subsp.
equisimilis SK1249]
gi|340766530|gb|EGR89056.1| ribosome recycling factor [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
gi|410439390|emb|CCI62018.1| Ribosome-recycling factor [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
Length = 185
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 85/162 (52%), Positives = 120/162 (74%)
Query: 115 FNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIV 174
+ S+R GR+N ++LD+I+V+YYG+P L +A I P++ LLI P+DKSS+K IE+A+
Sbjct: 24 YASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERALN 83
Query: 175 SSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQ 234
+SDLG+TP NDG VIRL +P LT E RKEL+K V K E K+A+RNIRRDA+ +K +
Sbjct: 84 ASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDDAKKQE 143
Query: 235 KEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
K K+++ED +K L D+QK TD+ +K+ID + +KEKELL V
Sbjct: 144 KAKEITEDELKTLEKDIQKATDDAIKEIDRMTAEKEKELLSV 185
>gi|160940991|ref|ZP_02088330.1| hypothetical protein CLOBOL_05885 [Clostridium bolteae ATCC
BAA-613]
gi|158436081|gb|EDP13848.1| hypothetical protein CLOBOL_05885 [Clostridium bolteae ATCC
BAA-613]
Length = 183
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 133/174 (76%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +T+D++ +++ ++R GR+NP +LDKI+V+YYG+P L+ + ++ P++ ++IQP++
Sbjct: 10 KMNKTLDVLLSDYGTIRAGRANPHVLDKIKVDYYGTPTPLQQVGNVSVPEARMIVIQPWE 69
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS LK IEKAI++S+LG+ P NDG IRL P++T ERRKE+SK V K+ + KVA+RNI
Sbjct: 70 KSLLKPIEKAILTSELGINPTNDGNCIRLVFPEMTEERRKEVSKDVKKKGDNAKVALRNI 129
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA +A++K +K +SED++ +++ +QKLTD+ ++K+D ++K KE++ V
Sbjct: 130 RRDANEAFKKAEKAGDISEDDLTEMTEKMQKLTDKMVEKVDKAVEEKTKEIMTV 183
>gi|269792356|ref|YP_003317260.1| ribosome recycling factor [Thermanaerovibrio acidaminovorans DSM
6589]
gi|269099991|gb|ACZ18978.1| ribosome recycling factor [Thermanaerovibrio acidaminovorans DSM
6589]
Length = 185
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 133/177 (75%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K++K + E+TI+ ++ +RTGR++PA++++I+V+Y+G+ +K + + P+ L+
Sbjct: 7 KEMKQKTEKTIEHLKGTLLGIRTGRAHPALVEEIKVDYFGTMTPIKQMGTVTVPEPRQLV 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I P+DKS+LK+IEKAI SS LG+TP DGE +R+ LP+LT ERR+ELSK+V K AEE +V
Sbjct: 67 ITPWDKSALKAIEKAIQSSSLGVTPKTDGESVRVVLPELTKERRQELSKLVNKYAEEARV 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
A+RN+RRD L+A++K++K ++SED K L ++Q D +KK+D++ ++KEKE+L
Sbjct: 127 AIRNVRRDVLEAFKKMEKAGEISEDEHKKLQKEVQDHVDGAIKKVDALAQEKEKEIL 183
>gi|52841939|ref|YP_095738.1| ribosome recycling factor [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|54294594|ref|YP_127009.1| ribosome recycling factor [Legionella pneumophila str. Lens]
gi|148359246|ref|YP_001250453.1| ribosome recycling factor [Legionella pneumophila str. Corby]
gi|296107291|ref|YP_003618991.1| Ribosome recycling factor [Legionella pneumophila 2300/99 Alcoy]
gi|378777573|ref|YP_005186011.1| ribosome recycling factor [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|397664160|ref|YP_006505698.1| ribosome recycling factor [Legionella pneumophila subsp.
pneumophila]
gi|397667438|ref|YP_006508975.1| ribosome recycling factor [Legionella pneumophila subsp.
pneumophila]
gi|60390233|sp|Q5WVZ0.1|RRF_LEGPL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|60390237|sp|Q5ZUT1.1|RRF_LEGPH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|166230796|sp|A5ICK7.1|RRF_LEGPC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|52629050|gb|AAU27791.1| ribosome recycling factor [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|53754426|emb|CAH15910.1| Ribosome recycling factor [Legionella pneumophila str. Lens]
gi|148281019|gb|ABQ55107.1| ribosome recycling factor [Legionella pneumophila str. Corby]
gi|295649192|gb|ADG25039.1| Ribosome recycling factor [Legionella pneumophila 2300/99 Alcoy]
gi|307610406|emb|CBW99976.1| ribosome recycling factor [Legionella pneumophila 130b]
gi|364508388|gb|AEW51912.1| ribosome recycling factor [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|395127571|emb|CCD05769.1| ribosome recycling factor [Legionella pneumophila subsp.
pneumophila]
gi|395130849|emb|CCD09098.1| ribosome recycling factor [Legionella pneumophila subsp.
pneumophila]
Length = 185
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 83/181 (45%), Positives = 133/181 (73%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I++D + RM++TI+ + T+ + +RTGR+N ++LD + V+YYGSP L +A I T DS +
Sbjct: 5 IKQDSEKRMKKTIEALHTDMSKIRTGRANASLLDHVMVDYYGSPTPLSQVANITTSDSRT 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
+L+ P++KS + +IEKAI++SDLG+ P G IR+ +P LT ERRKEL KVV + E+G
Sbjct: 65 ILVTPWEKSMVAAIEKAILNSDLGLNPATAGTAIRVPMPPLTEERRKELIKVVRHEGEQG 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
+V++RNIRRDA ++L KEK +SED+ + + +QKLTD Y+ ++D++ +KEK+L++
Sbjct: 125 RVSIRNIRRDANNQLKELVKEKAISEDDERRAAEAIQKLTDRYISEVDAVLAEKEKDLME 184
Query: 276 V 276
+
Sbjct: 185 I 185
>gi|366089281|ref|ZP_09455754.1| ribosome recycling factor [Lactobacillus acidipiscis KCTC 13900]
Length = 187
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 87/180 (48%), Positives = 130/180 (72%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I K+ +A+M ++ D ++ ++R GR+N ++L++I VEYYG L +AQI P++
Sbjct: 7 IIKEAQAKMSKSEDALQRELGNIRAGRANASLLNRINVEYYGVDTPLNQMAQITVPEARV 66
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LL+ PYDKSSLK +E+AI++SDLG++P NDG IRL +PQLT ERRKEL+K V +AE+G
Sbjct: 67 LLVTPYDKSSLKEVERAILASDLGISPANDGSAIRLVIPQLTEERRKELAKQVKAKAEDG 126
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVAVRNIRRD ++ +K +K+ L+ED + L QK+TDE +K ++++ KEKE+L+
Sbjct: 127 KVAVRNIRRDMMEQLKKSEKDGDLNEDELHALEEQAQKVTDESIKNLEALADDKEKEVLE 186
>gi|359689296|ref|ZP_09259297.1| ribosome recycling factor [Leptospira licerasiae serovar Varillal
str. MMD0835]
gi|418749483|ref|ZP_13305771.1| ribosome recycling factor [Leptospira licerasiae str. MMD4847]
gi|418759477|ref|ZP_13315657.1| ribosome recycling factor [Leptospira licerasiae serovar Varillal
str. VAR 010]
gi|384113968|gb|EIE00233.1| ribosome recycling factor [Leptospira licerasiae serovar Varillal
str. VAR 010]
gi|404274368|gb|EJZ41686.1| ribosome recycling factor [Leptospira licerasiae str. MMD4847]
Length = 184
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 85/178 (47%), Positives = 131/178 (73%), Gaps = 4/178 (2%)
Query: 100 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQ 159
+K++M++T+++++ +F VRTGR+NPA+++ + VEYYG+P + + I+ P+ L++
Sbjct: 10 MKSKMDKTVELLKKDFAGVRTGRANPALIEDLRVEYYGTPTPINQLGNISAPEPRLLVVS 69
Query: 160 PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAV 219
PYDK ++K IEKAI +S LG+ P NDG VIR+ +P+LT ERRKEL+KVV ++EE KVAV
Sbjct: 70 PYDKGTMKDIEKAIQASGLGLQPTNDGVVIRIIIPELTGERRKELAKVVKSKSEEKKVAV 129
Query: 220 RNIRRDALKAYEKLQKE-KKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RNIRRDA+ E L+K + +S+D +K L +QK+TD Y+ K+ +I +KEKE+ V
Sbjct: 130 RNIRRDAM---EDLKKHSEGISQDELKTLQDQVQKITDSYIDKVSAITAEKEKEITTV 184
>gi|399055565|ref|ZP_10743260.1| ribosome recycling factor [Brevibacillus sp. CF112]
gi|433546020|ref|ZP_20502358.1| ribosome recycling factor [Brevibacillus agri BAB-2500]
gi|398046774|gb|EJL39358.1| ribosome recycling factor [Brevibacillus sp. CF112]
gi|432182636|gb|ELK40199.1| ribosome recycling factor [Brevibacillus agri BAB-2500]
Length = 185
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 85/182 (46%), Positives = 131/182 (71%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
++ KD++ RM + I ++ + +S+R GR+NPAMLD++ V+YYG+P + +A I+ P+
Sbjct: 4 TVLKDMEDRMNKAILALKKDLSSLRAGRANPAMLDRVMVDYYGTPTPISQLANISVPEPR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
L IQP+DK++LK I++A+ SDLG++P+NDG +IRL +P LT ERRKEL K+ +K EE
Sbjct: 64 MLTIQPWDKTALKEIDRALQQSDLGISPSNDGVIIRLVIPPLTEERRKELVKLASKGGEE 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
KVA+RNIRRDA +KL+K +SED + +QK TD+++ ++D I K KEK++L
Sbjct: 124 AKVAIRNIRRDANDEIKKLEKAATISEDESRRHQETIQKTTDKFIAEVDKIVKDKEKDIL 183
Query: 275 KV 276
+V
Sbjct: 184 EV 185
>gi|49478397|ref|YP_037885.1| ribosome recycling factor [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|52141664|ref|YP_085165.1| ribosome recycling factor [Bacillus cereus E33L]
gi|118479046|ref|YP_896197.1| ribosome recycling factor [Bacillus thuringiensis str. Al Hakam]
gi|165872626|ref|ZP_02217257.1| ribosome recycling factor [Bacillus anthracis str. A0488]
gi|167635820|ref|ZP_02394129.1| ribosome recycling factor [Bacillus anthracis str. A0442]
gi|167639854|ref|ZP_02398123.1| ribosome recycling factor [Bacillus anthracis str. A0193]
gi|170687902|ref|ZP_02879116.1| ribosome recycling factor [Bacillus anthracis str. A0465]
gi|177652096|ref|ZP_02934642.1| ribosome recycling factor [Bacillus anthracis str. A0174]
gi|190568475|ref|ZP_03021382.1| ribosome recycling factor [Bacillus anthracis str. Tsiankovskii-I]
gi|196036913|ref|ZP_03104297.1| ribosome recycling factor [Bacillus cereus W]
gi|196042138|ref|ZP_03109421.1| ribosome recycling factor [Bacillus cereus NVH0597-99]
gi|196044581|ref|ZP_03111816.1| ribosome recycling factor [Bacillus cereus 03BB108]
gi|218904952|ref|YP_002452786.1| ribosome recycling factor [Bacillus cereus AH820]
gi|225865805|ref|YP_002751183.1| ribosome recycling factor [Bacillus cereus 03BB102]
gi|227813268|ref|YP_002813277.1| ribosome recycling factor [Bacillus anthracis str. CDC 684]
gi|228916461|ref|ZP_04080027.1| Ribosome-recycling factor [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228928872|ref|ZP_04091904.1| Ribosome-recycling factor [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935138|ref|ZP_04097965.1| Ribosome-recycling factor [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228947543|ref|ZP_04109833.1| Ribosome-recycling factor [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|229123337|ref|ZP_04252541.1| Ribosome-recycling factor [Bacillus cereus 95/8201]
gi|229162760|ref|ZP_04290717.1| Ribosome-recycling factor [Bacillus cereus R309803]
gi|229186063|ref|ZP_04313233.1| Ribosome-recycling factor [Bacillus cereus BGSC 6E1]
gi|254683469|ref|ZP_05147329.1| ribosome recycling factor [Bacillus anthracis str. CNEVA-9066]
gi|254721990|ref|ZP_05183779.1| ribosome recycling factor [Bacillus anthracis str. A1055]
gi|254735862|ref|ZP_05193568.1| ribosome recycling factor [Bacillus anthracis str. Western North
America USA6153]
gi|254739612|ref|ZP_05197306.1| ribosome recycling factor [Bacillus anthracis str. Kruger B]
gi|254756015|ref|ZP_05208046.1| ribosome recycling factor [Bacillus anthracis str. Vollum]
gi|254759324|ref|ZP_05211349.1| ribosome recycling factor [Bacillus anthracis str. Australia 94]
gi|301055314|ref|YP_003793525.1| ribosome releasing factor [Bacillus cereus biovar anthracis str.
CI]
gi|376267720|ref|YP_005120432.1| Ribosome recycling factor [Bacillus cereus F837/76]
gi|421507364|ref|ZP_15954284.1| ribosome recycling factor [Bacillus anthracis str. UR-1]
gi|421639579|ref|ZP_16080170.1| ribosome recycling factor [Bacillus anthracis str. BF1]
gi|423550427|ref|ZP_17526754.1| ribosome-recycling factor [Bacillus cereus ISP3191]
gi|60390240|sp|Q636K2.1|RRF_BACCZ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|60390255|sp|Q6HEZ1.1|RRF_BACHK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|166230411|sp|A0RHJ7.1|RRF_BACAH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|226703251|sp|B7JJA2.1|RRF_BACC0 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|254809490|sp|C3L7A3.1|RRF_BACAC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|254809491|sp|C1EP48.1|RRF_BACC3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|49329953|gb|AAT60599.1| ribosome recycling factor [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|51975133|gb|AAU16683.1| ribosome recycling factor [Bacillus cereus E33L]
gi|118418271|gb|ABK86690.1| ribosome recycling factor [Bacillus thuringiensis str. Al Hakam]
gi|164711658|gb|EDR17204.1| ribosome recycling factor [Bacillus anthracis str. A0488]
gi|167512255|gb|EDR87632.1| ribosome recycling factor [Bacillus anthracis str. A0193]
gi|167528777|gb|EDR91535.1| ribosome recycling factor [Bacillus anthracis str. A0442]
gi|170668218|gb|EDT18967.1| ribosome recycling factor [Bacillus anthracis str. A0465]
gi|172082465|gb|EDT67530.1| ribosome recycling factor [Bacillus anthracis str. A0174]
gi|190560479|gb|EDV14457.1| ribosome recycling factor [Bacillus anthracis str. Tsiankovskii-I]
gi|195990468|gb|EDX54452.1| ribosome recycling factor [Bacillus cereus W]
gi|196024616|gb|EDX63288.1| ribosome recycling factor [Bacillus cereus 03BB108]
gi|196026990|gb|EDX65614.1| ribosome recycling factor [Bacillus cereus NVH0597-99]
gi|218535243|gb|ACK87641.1| ribosome recycling factor [Bacillus cereus AH820]
gi|225788805|gb|ACO29022.1| ribosome recycling factor [Bacillus cereus 03BB102]
gi|227004475|gb|ACP14218.1| ribosome recycling factor [Bacillus anthracis str. CDC 684]
gi|228597482|gb|EEK55132.1| Ribosome-recycling factor [Bacillus cereus BGSC 6E1]
gi|228620642|gb|EEK77511.1| Ribosome-recycling factor [Bacillus cereus R309803]
gi|228660113|gb|EEL15749.1| Ribosome-recycling factor [Bacillus cereus 95/8201]
gi|228812063|gb|EEM58394.1| Ribosome-recycling factor [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228824503|gb|EEM70308.1| Ribosome-recycling factor [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228830679|gb|EEM76284.1| Ribosome-recycling factor [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228843040|gb|EEM88122.1| Ribosome-recycling factor [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|300377483|gb|ADK06387.1| ribosome releasing factor [Bacillus cereus biovar anthracis str.
CI]
gi|364513520|gb|AEW56919.1| Ribosome recycling factor [Bacillus cereus F837/76]
gi|401190043|gb|EJQ97093.1| ribosome-recycling factor [Bacillus cereus ISP3191]
gi|401822498|gb|EJT21648.1| ribosome recycling factor [Bacillus anthracis str. UR-1]
gi|403393244|gb|EJY90489.1| ribosome recycling factor [Bacillus anthracis str. BF1]
Length = 185
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 126/174 (72%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+ME+ + +VR GR++ ++LDK++V+YYG+P + +A I P++ L+IQPYD
Sbjct: 12 KMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+S+ IEKAI+ +DLG+ P+NDG VIR+ P LT ERR++L KVV K AEE KVAVRN+
Sbjct: 72 KTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNV 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD +KL+K +++ED+++ + D+QK TD+Y+ K+D I K KEKE+++V
Sbjct: 132 RRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIMEV 185
>gi|402834775|ref|ZP_10883368.1| ribosome recycling factor [Selenomonas sp. CM52]
gi|402277098|gb|EJU26189.1| ribosome recycling factor [Selenomonas sp. CM52]
Length = 185
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 127/174 (72%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM++T++ +R +F S+R GR+ PA+LD++ V+YYG P + +A I P+ L+I P++
Sbjct: 12 RMKKTLEALRRDFGSLRAGRATPALLDRVMVDYYGQPTPVSQVAAIAVPEPRMLMITPWE 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+ L IEKAI+ SDLG+TPN+DG +RL++PQLT ERR EL K + K+ E+ KVA+RNI
Sbjct: 72 KTILHDIEKAIMKSDLGLTPNSDGTAVRLSIPQLTQERRTELVKSLNKKTEDAKVAIRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA + +KL+K K+++ED+ K D+QKL D+Y+K ++ KEKE+++V
Sbjct: 132 RRDANEQMKKLEKAKEITEDDAKKGQDDMQKLVDKYIKAVEDARVVKEKEIMEV 185
>gi|355670191|ref|ZP_09057046.1| ribosome-recycling factor [Clostridium citroniae WAL-17108]
gi|354816263|gb|EHF00851.1| ribosome-recycling factor [Clostridium citroniae WAL-17108]
Length = 183
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 131/174 (75%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +T+D++ ++F ++R GR+NP +LDKI+V+YYG+P L+ + ++ P++ ++IQP++
Sbjct: 10 KMNKTLDVLLSDFGTIRAGRANPHVLDKIKVDYYGTPTPLQQVGNVSVPEARMIVIQPWE 69
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS LK IEKAI++S+LG+ P NDG IRL P++T ERRK +SK V K+ E KVA+RNI
Sbjct: 70 KSLLKPIEKAILTSELGINPTNDGNCIRLVFPEMTEERRKAVSKDVKKKGEGAKVALRNI 129
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA +A++K +K +SED++ + + +QKLTD+ ++KID ++K KE++ V
Sbjct: 130 RRDANEAFKKAEKAGDMSEDDLTEATERMQKLTDKMVEKIDKAVEEKTKEIMTV 183
>gi|229092864|ref|ZP_04223998.1| Ribosome-recycling factor [Bacillus cereus Rock3-42]
gi|228690486|gb|EEL44269.1| Ribosome-recycling factor [Bacillus cereus Rock3-42]
Length = 185
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 126/174 (72%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+ME+ + +VR GR++ ++LDK++V+YYG+P + +A I P++ L+IQPYD
Sbjct: 12 KMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+S+ IEKAI+ +DLG+ P+NDG VIR+ P LT ERR++L KVV K AEE KVAVRN+
Sbjct: 72 KTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNV 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD +KL+K +++ED+++ + D+QK TD+Y+ K+D I K KEKE+++V
Sbjct: 132 RRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIMEV 185
>gi|30263828|ref|NP_846205.1| ribosome recycling factor [Bacillus anthracis str. Ames]
gi|47529252|ref|YP_020601.1| ribosome recycling factor [Bacillus anthracis str. 'Ames Ancestor']
gi|49186674|ref|YP_029926.1| ribosome recycling factor [Bacillus anthracis str. Sterne]
gi|65321151|ref|ZP_00394110.1| COG0233: Ribosome recycling factor [Bacillus anthracis str. A2012]
gi|170706904|ref|ZP_02897362.1| ribosome recycling factor [Bacillus anthracis str. A0389]
gi|229604313|ref|YP_002868062.1| ribosome recycling factor [Bacillus anthracis str. A0248]
gi|33301536|sp|Q81WL1.1|RRF_BACAN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|254809489|sp|C3P5M6.1|RRF_BACAA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|30258472|gb|AAP27691.1| ribosome recycling factor [Bacillus anthracis str. Ames]
gi|47504400|gb|AAT33076.1| ribosome recycling factor [Bacillus anthracis str. 'Ames Ancestor']
gi|49180601|gb|AAT55977.1| ribosome recycling factor [Bacillus anthracis str. Sterne]
gi|170128322|gb|EDS97191.1| ribosome recycling factor [Bacillus anthracis str. A0389]
gi|229268721|gb|ACQ50358.1| ribosome recycling factor [Bacillus anthracis str. A0248]
Length = 185
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 126/174 (72%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+ME+ + +VR GR++ ++LDK++V+YYG+P + +A I P++ L+IQPYD
Sbjct: 12 KMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+S+ IEKAI+ +DLG+ P+NDG VIR+ P LT ERR++L KVV K AEE KVAVRN+
Sbjct: 72 KTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNV 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD +KL+K +++ED+++ + D+QK TD+Y+ K+D I K KEKE+++V
Sbjct: 132 RRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIMEV 185
>gi|345019859|ref|ZP_08783472.1| ribosome recycling factor [Ornithinibacillus scapharcae TW25]
Length = 185
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 86/181 (47%), Positives = 128/181 (70%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I + + +M++TI N +VR GR+NP++LD + VEYYG+ L +A I P++
Sbjct: 5 IMNECRDKMQQTIQAFTRNLATVRAGRANPSLLDSVFVEYYGANTPLNQLASIGAPEARL 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L+I PYDK+++ IEKAI +DLG++P+NDG VIRL +P LT ERRK+L KVV K AEE
Sbjct: 65 LVITPYDKTAMGDIEKAIQKADLGLSPSNDGNVIRLNIPPLTEERRKDLVKVVGKYAEEF 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
+V VRN+RRD A +K +K +L+ED +++ D+QK+TD+Y+ +ID + K KEKE+++
Sbjct: 125 RVQVRNVRRDTNDALKKAEKNGELTEDELRNAQDDVQKVTDKYIAEIDQLAKDKEKEIME 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|400977594|pdb|4GFQ|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of Ribosome
Recycling Factor (Frr) From Bacillus Anthracis
Length = 209
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 126/174 (72%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+ME+ + +VR GR++ ++LDK++V+YYG+P + +A I P++ L+IQPYD
Sbjct: 36 KMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYD 95
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+S+ IEKAI+ +DLG+ P+NDG VIR+ P LT ERR++L KVV K AEE KVAVRN+
Sbjct: 96 KTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNV 155
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD +KL+K +++ED+++ + D+QK TD+Y+ K+D I K KEKE+++V
Sbjct: 156 RRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIMEV 209
>gi|219130047|ref|XP_002185186.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403365|gb|EEC43318.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 173
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 86/173 (49%), Positives = 121/173 (69%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M +++D VR N SVRTGR++ +LD+++V+YYG L +A I+ P + L I PYDK
Sbjct: 1 MAKSVDSVRLNLQSVRTGRASAQILDRVKVDYYGVETPLNQMATISVPSAQQLSIDPYDK 60
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
+SL +IE AIV SDLG+T NNDG +IR+ +P +T +RRKE+ K+ EEGKVAVRNIR
Sbjct: 61 TSLNNIETAIVESDLGLTTNNDGSIIRINIPSMTEDRRKEMLKLCKSIGEEGKVAVRNIR 120
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RD L +K++K + ED +KD +QKLTD+ +K+ID + KEKE++KV
Sbjct: 121 RDGLDTIKKMEKSSDIGEDEMKDGQDTMQKLTDKNVKEIDEVVGAKEKEVMKV 173
>gi|169830793|ref|YP_001716775.1| ribosome recycling factor [Candidatus Desulforudis audaxviator
MP104C]
gi|169637637|gb|ACA59143.1| ribosome recycling factor [Candidatus Desulforudis audaxviator
MP104C]
Length = 174
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 129/174 (74%), Gaps = 1/174 (0%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M +TI+++ F S+R GR+ PA+LD+I V+YYGS + + +A ++ P++ L+IQP+DK
Sbjct: 1 MMKTIEVLDREFASLRAGRATPALLDRITVDYYGSTIPINQLATVSVPEARLLVIQPWDK 60
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
S++ IE+AI+ SDLG+TP++DG +IRL +PQLT ERR++L K + K+ EE KVAVRNIR
Sbjct: 61 SAIGEIERAILKSDLGITPSSDGNIIRLAVPQLTEERRRDLVKFLKKRGEEAKVAVRNIR 120
Query: 224 RDALKAYEKLQKE-KKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RD ++ + LQKE SED+++ + QKLTD Y+K+ID I KEKE++++
Sbjct: 121 RDVIERLKALQKEGGGFSEDDLRREQDEAQKLTDRYVKEIDRIVAAKEKEVMEI 174
>gi|225018404|ref|ZP_03707596.1| hypothetical protein CLOSTMETH_02351 [Clostridium methylpentosum
DSM 5476]
gi|224948822|gb|EEG30031.1| hypothetical protein CLOSTMETH_02351 [Clostridium methylpentosum
DSM 5476]
Length = 184
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 127/175 (72%)
Query: 102 ARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPY 161
++M +T++ + + ++R GR+NP +LDKI V+YYG+P + +A ++ ++ L+I P+
Sbjct: 10 SKMHKTVERLEHEYTTIRAGRANPNVLDKILVDYYGTPTQINQMAAVSVSEARILVISPW 69
Query: 162 DKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRN 221
D +SLK+IEKAI +SDLG+ P NDG+VIR+ PQLT ERRKE+ K V K E+ KVAVRN
Sbjct: 70 DATSLKAIEKAIQASDLGINPTNDGKVIRIAFPQLTEERRKEIVKEVHKMREDAKVAVRN 129
Query: 222 IRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
IRRDA+ ++ ++KE +SED +KD LQ + D++ K+ID++ KEKE++++
Sbjct: 130 IRRDAMDKFKAIKKEGSVSEDEIKDGEKKLQNMVDKFCKEIDNVAAGKEKEIMEI 184
>gi|116514309|ref|YP_813215.1| ribosome recycling factor [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|122274959|sp|Q049U5.1|RRF_LACDB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|116093624|gb|ABJ58777.1| ribosome recycling factor [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
Length = 185
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 86/175 (49%), Positives = 127/175 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K M ++I++ ++N +VR G +N ++LD++ VEYYG P L +A I P+ L+I P
Sbjct: 10 KRNMNKSIEVYQSNLATVRAGVANASLLDRVMVEYYGVPTPLVQMAGITIPEPRVLMITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDKSSL IE AI++SDLG+TP NDG VIRL +PQLT ERR+E++K V K AEE K+AVR
Sbjct: 70 YDKSSLNDIEHAILASDLGLTPANDGNVIRLIIPQLTGERRQEIAKEVGKLAEEAKIAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
N+R++A+KA +K +K+ +++ED + L ++QK+TDE KKID + K KE+++
Sbjct: 130 NVRQEAMKALKKQEKDGEITEDEERRLEKEVQKVTDESTKKIDQMADNKRKEIIQ 184
>gi|217967587|ref|YP_002353093.1| ribosome recycling factor [Dictyoglomus turgidum DSM 6724]
gi|217336686|gb|ACK42479.1| ribosome recycling factor [Dictyoglomus turgidum DSM 6724]
Length = 185
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 134/179 (74%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+++ +M++ +++V+ F ++RTG+ + + D+I+V YYG+ + L +A + + ++L
Sbjct: 7 KEIEEKMKKAVEVVKKEFQNIRTGKPSVGIFDEIKVSYYGNMMPLNQVATLKVAEGRTVL 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+DKS + IEKAI+ S+LG+TP NDG+VIR+ P LT ERRKEL K+V K+AE G+V
Sbjct: 67 IQPWDKSIIGEIEKAILKSELGLTPQNDGQVIRVVFPPLTEERRKELVKIVHKEAETGRV 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RNIRRD L+ ++K ++E K+SED L +LQK+TD+++++I+ + + KEKE+++V
Sbjct: 127 AIRNIRRDYLEIFKKEKQEGKISEDEFYRLQEELQKITDKFIEEIEKLIEMKEKEIMEV 185
>gi|325661706|ref|ZP_08150329.1| ribosome-recycling factor [Lachnospiraceae bacterium 4_1_37FAA]
gi|325471959|gb|EGC75174.1| ribosome-recycling factor [Lachnospiraceae bacterium 4_1_37FAA]
Length = 183
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 127/174 (72%), Gaps = 1/174 (0%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+ME++ + + + ++R GR+NP +LDK+ V+YYGSP ++ +A ++ P++ + IQP++
Sbjct: 11 KMEKSYNSLTSELATIRAGRANPHVLDKLTVDYYGSPTPIQQVANVSVPEARMIQIQPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS ++ IEKAI++SD+G+ P NDG VIRL P+LT ERRKEL K V K+ E GKVAVRNI
Sbjct: 71 KSMVREIEKAILTSDIGINPTNDGTVIRLVFPELTEERRKELVKDVKKKGEAGKVAVRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD ++KL K ++SED +KDL +LQKLTD+Y+ +ID + K KE++ V
Sbjct: 131 RRDGNDTFKKL-KGTEVSEDEIKDLEDELQKLTDKYIAQIDKAVEAKSKEVMTV 183
>gi|304439992|ref|ZP_07399885.1| ribosome recycling factor [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304371484|gb|EFM25097.1| ribosome recycling factor [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 184
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 132/174 (75%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M+++I++++ + S+R GR+NPA+LDKI VEYYG L +A I+ P++ L++QP+D
Sbjct: 11 KMKKSIEVLKDDLLSIRAGRANPALLDKITVEYYGQVTPLNQVAGISAPEARLLVVQPWD 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
+S + IEK I+ SDLG+ P+NDG+V+RL +PQLT ERR++L+K+V K E+ KVA+RNI
Sbjct: 71 QSLISVIEKEILKSDLGLNPSNDGKVVRLIIPQLTEERRRDLTKIVKKNGEDTKVAIRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RR A+ +KL+K+K++SED K +Q+LTD+Y+K++D + K KE EL+++
Sbjct: 131 RRVAIDEVKKLEKDKEISEDERKVAEDKVQELTDKYIKEVDVVTKAKEDELMEI 184
>gi|195978553|ref|YP_002123797.1| ribosome recycling factor [Streptococcus equi subsp. zooepidemicus
MGCS10565]
gi|225868107|ref|YP_002744055.1| ribosome recycling factor [Streptococcus equi subsp. zooepidemicus]
gi|225870940|ref|YP_002746887.1| ribosome recycling factor [Streptococcus equi subsp. equi 4047]
gi|414564520|ref|YP_006043481.1| ribosome recycling factor [Streptococcus equi subsp. zooepidemicus
ATCC 35246]
gi|226749941|sp|B4U467.1|RRF_STREM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|254809531|sp|C0MBT1.1|RRF_STRE4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|259494555|sp|C0MCC9.1|RRF_STRS7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|195975258|gb|ACG62784.1| ribosome recycling factor Frr [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|225700344|emb|CAW94656.1| ribosome recycling factor [Streptococcus equi subsp. equi 4047]
gi|225701383|emb|CAW98452.1| ribosome recycling factor [Streptococcus equi subsp. zooepidemicus]
gi|338847585|gb|AEJ25797.1| ribosome recycling factor [Streptococcus equi subsp. zooepidemicus
ATCC 35246]
Length = 185
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 86/162 (53%), Positives = 119/162 (73%)
Query: 115 FNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIV 174
+ S+R GR+N ++LD+I+V+YYG+P L +A I P++ LLI P+DKSS+K IE+A+
Sbjct: 24 YASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERALN 83
Query: 175 SSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQ 234
+SDLG+TP NDG VIRL +P LT E RKEL+K V K E KV++RNIRRDA+ +K +
Sbjct: 84 ASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGETAKVSIRNIRRDAMDEAKKQE 143
Query: 235 KEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
K K+++ED +K L D+QK TDE +K+ID + KEKELL V
Sbjct: 144 KAKEITEDELKALEKDIQKATDEAVKEIDRMTADKEKELLSV 185
>gi|152976190|ref|YP_001375707.1| ribosome recycling factor [Bacillus cytotoxicus NVH 391-98]
gi|189044044|sp|A7GRF4.1|RRF_BACCN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|152024942|gb|ABS22712.1| ribosome recycling factor [Bacillus cytotoxicus NVH 391-98]
Length = 185
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 86/184 (46%), Positives = 130/184 (70%), Gaps = 5/184 (2%)
Query: 93 KSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPD 152
KSS EK ME+ + +VR GR++ ++LDK++V+YYG+P + +A I P+
Sbjct: 7 KSSTEK-----MEKAVAAYSRELATVRAGRASASILDKVQVDYYGAPTPVVQLANITVPE 61
Query: 153 SSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQA 212
+ L+IQPYDK+S+ IEKAI+ +DLG+ P+NDG VIR+ P LT ERR+EL KVV K A
Sbjct: 62 ARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGSVIRIAFPALTEERRRELVKVVKKYA 121
Query: 213 EEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKE 272
E+ KVA+RN+RRD +KL+K +++ED+++ + D+QK TD+Y+ K+D I K KE+E
Sbjct: 122 EDAKVAIRNVRRDGNDELKKLEKAGEMTEDDLRGYTEDIQKETDKYIAKVDEIAKNKEQE 181
Query: 273 LLKV 276
+++V
Sbjct: 182 IMEV 185
>gi|376294801|ref|YP_005166031.1| ribosome recycling factor [Desulfovibrio desulfuricans ND132]
gi|323457362|gb|EGB13227.1| ribosome recycling factor [Desulfovibrio desulfuricans ND132]
Length = 184
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 82/178 (46%), Positives = 129/178 (72%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D K RM I + +F+ +RTGR+ A++D I V+YYG+P + ++ ++ PDS ++ I
Sbjct: 7 DGKKRMSGAITALDKDFSKLRTGRATTALVDSILVDYYGTPTPISQLSSVSVPDSKTITI 66
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+DK + S+EKAI +SDLG+ P NDG++IR+++P LT ERRKEL KV K E+ K+A
Sbjct: 67 QPWDKGAFGSVEKAIQTSDLGLNPVNDGKIIRISIPPLTEERRKELVKVAKKYTEDAKIA 126
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RN+RRD A +K++K+K++SED+ + +D+QK+TD+Y+KK D + KEKE+L++
Sbjct: 127 IRNVRRDMNDALKKMEKDKEISEDDQRRSEADVQKMTDDYVKKADEVMAAKEKEILEI 184
>gi|206900181|ref|YP_002250924.1| ribosome recycling factor [Dictyoglomus thermophilum H-6-12]
gi|206739284|gb|ACI18342.1| ribosome recycling factor [Dictyoglomus thermophilum H-6-12]
Length = 185
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 133/179 (74%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+++ +M++ +++V+ F +RTG+ + + D+I++ YYG+ + L +A + + ++L
Sbjct: 7 KEIEEKMKKAVEVVKKEFQGIRTGKPSIGIFDEIKISYYGNMMPLNQVATLKIAEGRTVL 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+DKS + IEKAI+ S+LG+TP NDG+VIR+ P LT ERRKEL KVV K+AE G+V
Sbjct: 67 IQPWDKSIIGEIEKAILKSELGLTPQNDGQVIRVVFPPLTEERRKELVKVVHKEAENGRV 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RNIRRD L+ ++K ++E K+SED L +LQK+TD+++++I+ + + KEKE+++V
Sbjct: 127 AIRNIRRDYLEIFKKEKQEGKISEDEFYRLQEELQKMTDKFIEEIEKLIEMKEKEIMEV 185
>gi|261407947|ref|YP_003244188.1| ribosome recycling factor [Paenibacillus sp. Y412MC10]
gi|329929321|ref|ZP_08283074.1| ribosome recycling factor [Paenibacillus sp. HGF5]
gi|261284410|gb|ACX66381.1| ribosome recycling factor [Paenibacillus sp. Y412MC10]
gi|328936690|gb|EGG33133.1| ribosome recycling factor [Paenibacillus sp. HGF5]
Length = 184
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 90/182 (49%), Positives = 129/182 (70%), Gaps = 1/182 (0%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
S++K+ + RME+ I ++ + ++R GR+ PA+LD+I VEYYG+ L +A I+TPDS
Sbjct: 4 SVKKNAEERMEKAILSLKRDLATLRAGRAAPALLDRITVEYYGAQTPLNQLANISTPDSR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
+L+IQP+DKSSL IEKAI+ SD+G+TP NDG IRL +P LT ERR EL K+ K EE
Sbjct: 64 TLMIQPWDKSSLADIEKAIMKSDIGLTPANDGNQIRLVVPALTEERRTELVKMTKKFGEE 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
KVA+RNIRRDA +KL+K +SED + D+QK TD+++ ++D + KEKE++
Sbjct: 124 AKVAIRNIRRDANDDIKKLEK-TDISEDESRRHQEDIQKATDKFIAEVDKVLVAKEKEIM 182
Query: 275 KV 276
+V
Sbjct: 183 EV 184
>gi|270292949|ref|ZP_06199160.1| ribosome recycling factor [Streptococcus sp. M143]
gi|401683554|ref|ZP_10815440.1| ribosome recycling factor [Streptococcus sp. BS35b]
gi|417794354|ref|ZP_12441612.1| ribosome recycling factor [Streptococcus oralis SK255]
gi|417933971|ref|ZP_12577291.1| ribosome recycling factor [Streptococcus mitis bv. 2 str. F0392]
gi|270278928|gb|EFA24774.1| ribosome recycling factor [Streptococcus sp. M143]
gi|334270198|gb|EGL88605.1| ribosome recycling factor [Streptococcus oralis SK255]
gi|340770541|gb|EGR93056.1| ribosome recycling factor [Streptococcus mitis bv. 2 str. F0392]
gi|400187632|gb|EJO21826.1| ribosome recycling factor [Streptococcus sp. BS35b]
Length = 185
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 90/183 (49%), Positives = 126/183 (68%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K RM ++ + F +R GR+N ++LD+I VEYYG L IA I P++
Sbjct: 3 NAIVEKAKERMTQSHQSLAREFGGIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K E
Sbjct: 63 RVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
KVAVRNIRRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKEL
Sbjct: 123 NAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKEL 182
Query: 274 LKV 276
L+V
Sbjct: 183 LEV 185
>gi|168494373|ref|ZP_02718516.1| ribosome recycling factor [Streptococcus pneumoniae CDC3059-06]
gi|183575679|gb|EDT96207.1| ribosome recycling factor [Streptococcus pneumoniae CDC3059-06]
Length = 185
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 91/181 (50%), Positives = 126/181 (69%), Gaps = 1/181 (0%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
IEK K RM ++ + F ++R GR+N ++LD++ VEYYG L IA I P++
Sbjct: 6 IEK-AKERMTQSHHSLAREFGAIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K E
Sbjct: 65 LLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVAVRNIRRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKELL+
Sbjct: 125 KVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|418086678|ref|ZP_12723848.1| ribosome recycling factor [Streptococcus pneumoniae GA47033]
gi|418202218|ref|ZP_12838648.1| ribosome recycling factor [Streptococcus pneumoniae GA52306]
gi|419455342|ref|ZP_13995302.1| ribosome recycling factor [Streptococcus pneumoniae EU-NP04]
gi|421284982|ref|ZP_15735759.1| ribosome recycling factor [Streptococcus pneumoniae GA60190]
gi|353758939|gb|EHD39525.1| ribosome recycling factor [Streptococcus pneumoniae GA47033]
gi|353868021|gb|EHE47911.1| ribosome recycling factor [Streptococcus pneumoniae GA52306]
gi|379629799|gb|EHZ94393.1| ribosome recycling factor [Streptococcus pneumoniae EU-NP04]
gi|395886961|gb|EJG97976.1| ribosome recycling factor [Streptococcus pneumoniae GA60190]
Length = 185
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 92/181 (50%), Positives = 125/181 (69%), Gaps = 1/181 (0%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
IEK K RM ++ + F +R GR+N ++LD+I VEYYG L IA I P++
Sbjct: 6 IEK-AKERMTQSHQSLAREFGGIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K E
Sbjct: 65 LLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVAVRNIRRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKELL+
Sbjct: 125 KVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|228998600|ref|ZP_04158187.1| Ribosome-recycling factor [Bacillus mycoides Rock3-17]
gi|229006100|ref|ZP_04163788.1| Ribosome-recycling factor [Bacillus mycoides Rock1-4]
gi|228755176|gb|EEM04533.1| Ribosome-recycling factor [Bacillus mycoides Rock1-4]
gi|228761068|gb|EEM10027.1| Ribosome-recycling factor [Bacillus mycoides Rock3-17]
Length = 185
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 124/174 (71%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+ME+ + SVR GR++ + LDK++V+YYG+P + +A I P++ L+IQPYD
Sbjct: 12 KMEKAVAAYSRELASVRAGRASASALDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+S+ IEKAI+ +DLG+ P+NDG VIR+ P LT ERR++L K V K AEE KVAVRN+
Sbjct: 72 KTSIGDIEKAILKADLGLNPSNDGSVIRIAFPALTEERRRDLVKTVKKYAEEAKVAVRNV 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA +KL+K ++ED+++ + D+QK TD+Y+ K+D I K KEKE+++V
Sbjct: 132 RRDANDDLKKLEKAGDITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIMEV 185
>gi|75764985|ref|ZP_00744310.1| Ribosome Recycling Factor (RRF) [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218898977|ref|YP_002447388.1| ribosome recycling factor [Bacillus cereus G9842]
gi|228902327|ref|ZP_04066484.1| Ribosome-recycling factor [Bacillus thuringiensis IBL 4222]
gi|228909648|ref|ZP_04073471.1| Ribosome-recycling factor [Bacillus thuringiensis IBL 200]
gi|228940912|ref|ZP_04103471.1| Ribosome-recycling factor [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228973841|ref|ZP_04134417.1| Ribosome-recycling factor [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228980430|ref|ZP_04140740.1| Ribosome-recycling factor [Bacillus thuringiensis Bt407]
gi|229031454|ref|ZP_04187454.1| Ribosome-recycling factor [Bacillus cereus AH1271]
gi|229098293|ref|ZP_04229240.1| Ribosome-recycling factor [Bacillus cereus Rock3-29]
gi|229104386|ref|ZP_04235055.1| Ribosome-recycling factor [Bacillus cereus Rock3-28]
gi|229117310|ref|ZP_04246688.1| Ribosome-recycling factor [Bacillus cereus Rock1-3]
gi|384187883|ref|YP_005573779.1| ribosome recycling factor [Bacillus thuringiensis serovar chinensis
CT-43]
gi|402558850|ref|YP_006601574.1| ribosome recycling factor [Bacillus thuringiensis HD-771]
gi|407706283|ref|YP_006829868.1| hypothetical protein MC28_3047 [Bacillus thuringiensis MC28]
gi|410676197|ref|YP_006928568.1| ribosome-recycling factor Frr [Bacillus thuringiensis Bt407]
gi|423359140|ref|ZP_17336643.1| ribosome-recycling factor [Bacillus cereus VD022]
gi|423378337|ref|ZP_17355621.1| ribosome-recycling factor [Bacillus cereus BAG1O-2]
gi|423385327|ref|ZP_17362583.1| ribosome-recycling factor [Bacillus cereus BAG1X1-2]
gi|423395875|ref|ZP_17373076.1| ribosome-recycling factor [Bacillus cereus BAG2X1-1]
gi|423406751|ref|ZP_17383900.1| ribosome-recycling factor [Bacillus cereus BAG2X1-3]
gi|423418269|ref|ZP_17395358.1| ribosome-recycling factor [Bacillus cereus BAG3X2-1]
gi|423441445|ref|ZP_17418351.1| ribosome-recycling factor [Bacillus cereus BAG4X2-1]
gi|423448329|ref|ZP_17425208.1| ribosome-recycling factor [Bacillus cereus BAG5O-1]
gi|423464519|ref|ZP_17441287.1| ribosome-recycling factor [Bacillus cereus BAG6O-1]
gi|423528315|ref|ZP_17504760.1| ribosome-recycling factor [Bacillus cereus HuB1-1]
gi|423533861|ref|ZP_17510279.1| ribosome-recycling factor [Bacillus cereus HuB2-9]
gi|423540870|ref|ZP_17517261.1| ribosome-recycling factor [Bacillus cereus HuB4-10]
gi|423547108|ref|ZP_17523466.1| ribosome-recycling factor [Bacillus cereus HuB5-5]
gi|423561770|ref|ZP_17538046.1| ribosome-recycling factor [Bacillus cereus MSX-A1]
gi|423612041|ref|ZP_17587902.1| ribosome-recycling factor [Bacillus cereus VD107]
gi|423615915|ref|ZP_17591749.1| ribosome-recycling factor [Bacillus cereus VD115]
gi|423623100|ref|ZP_17598878.1| ribosome-recycling factor [Bacillus cereus VD148]
gi|434376927|ref|YP_006611571.1| ribosome recycling factor [Bacillus thuringiensis HD-789]
gi|452200263|ref|YP_007480344.1| Ribosome recycling factor [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|226703252|sp|B7IUI3.1|RRF_BACC2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|74487527|gb|EAO51418.1| Ribosome Recycling Factor (RRF) [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218541328|gb|ACK93722.1| ribosome recycling factor [Bacillus cereus G9842]
gi|228666210|gb|EEL21674.1| Ribosome-recycling factor [Bacillus cereus Rock1-3]
gi|228679084|gb|EEL33292.1| Ribosome-recycling factor [Bacillus cereus Rock3-28]
gi|228685191|gb|EEL39122.1| Ribosome-recycling factor [Bacillus cereus Rock3-29]
gi|228729743|gb|EEL80723.1| Ribosome-recycling factor [Bacillus cereus AH1271]
gi|228779250|gb|EEM27507.1| Ribosome-recycling factor [Bacillus thuringiensis Bt407]
gi|228785866|gb|EEM33869.1| Ribosome-recycling factor [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228818748|gb|EEM64814.1| Ribosome-recycling factor [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228849937|gb|EEM94768.1| Ribosome-recycling factor [Bacillus thuringiensis IBL 200]
gi|228857296|gb|EEN01799.1| Ribosome-recycling factor [Bacillus thuringiensis IBL 4222]
gi|326941592|gb|AEA17488.1| ribosome recycling factor [Bacillus thuringiensis serovar chinensis
CT-43]
gi|401085012|gb|EJP93258.1| ribosome-recycling factor [Bacillus cereus VD022]
gi|401106542|gb|EJQ14503.1| ribosome-recycling factor [Bacillus cereus BAG3X2-1]
gi|401128923|gb|EJQ36606.1| ribosome-recycling factor [Bacillus cereus BAG5O-1]
gi|401172058|gb|EJQ79279.1| ribosome-recycling factor [Bacillus cereus HuB4-10]
gi|401178829|gb|EJQ86002.1| ribosome-recycling factor [Bacillus cereus HuB5-5]
gi|401202027|gb|EJR08892.1| ribosome-recycling factor [Bacillus cereus MSX-A1]
gi|401247048|gb|EJR53392.1| ribosome-recycling factor [Bacillus cereus VD107]
gi|401259873|gb|EJR66047.1| ribosome-recycling factor [Bacillus cereus VD148]
gi|401260452|gb|EJR66625.1| ribosome-recycling factor [Bacillus cereus VD115]
gi|401635383|gb|EJS53138.1| ribosome-recycling factor [Bacillus cereus BAG1X1-2]
gi|401636603|gb|EJS54357.1| ribosome-recycling factor [Bacillus cereus BAG1O-2]
gi|401653617|gb|EJS71161.1| ribosome-recycling factor [Bacillus cereus BAG2X1-1]
gi|401660041|gb|EJS77524.1| ribosome-recycling factor [Bacillus cereus BAG2X1-3]
gi|401787502|gb|AFQ13541.1| ribosome recycling factor [Bacillus thuringiensis HD-771]
gi|401875484|gb|AFQ27651.1| ribosome recycling factor [Bacillus thuringiensis HD-789]
gi|402418106|gb|EJV50406.1| ribosome-recycling factor [Bacillus cereus BAG4X2-1]
gi|402420786|gb|EJV53057.1| ribosome-recycling factor [Bacillus cereus BAG6O-1]
gi|402451978|gb|EJV83797.1| ribosome-recycling factor [Bacillus cereus HuB1-1]
gi|402464080|gb|EJV95780.1| ribosome-recycling factor [Bacillus cereus HuB2-9]
gi|407383968|gb|AFU14469.1| Ribosome Recycling Factor [Bacillus thuringiensis MC28]
gi|409175326|gb|AFV19631.1| ribosome-recycling factor Frr [Bacillus thuringiensis Bt407]
gi|452105656|gb|AGG02596.1| Ribosome recycling factor [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 185
Score = 179 bits (455), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 126/174 (72%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+ME+ + +VR GR++ ++LDK++V+YYG+P + +A I P++ L+IQPYD
Sbjct: 12 KMEKAVAAYSRELATVRAGRASSSVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+S+ IEKAI+ +DLG+ P+NDG VIR+ P LT ERR++L KVV K AEE KVAVRN+
Sbjct: 72 KTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNV 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD +KL+K +++ED+++ + D+QK TD+Y+ K+D I K KEKE+++V
Sbjct: 132 RRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIMEV 185
>gi|256830146|ref|YP_003158874.1| ribosome recycling factor [Desulfomicrobium baculatum DSM 4028]
gi|256579322|gb|ACU90458.1| ribosome recycling factor [Desulfomicrobium baculatum DSM 4028]
Length = 184
Score = 179 bits (455), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 81/179 (45%), Positives = 128/179 (71%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
+D RM+++ID + +F+ +RTGR++ A++D I VEYYG+P L +A ++ PDS ++
Sbjct: 6 QDCTNRMQKSIDSLEKDFSKLRTGRASTALVDSIRVEYYGTPTPLNQVASVSIPDSRTIS 65
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I P+D+++ SIEKAI+ SDLG+TP NDG IR+ +P LT ERRK+L K+ K EE KV
Sbjct: 66 ISPWDRNAFNSIEKAIMKSDLGLTPINDGRAIRINIPVLTEERRKDLVKMAKKYTEEAKV 125
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RN+RRD A +K+ K++SED++ ++QK TD ++KK D++ +KEKE++++
Sbjct: 126 AIRNVRRDVNDALKKMHTAKEISEDDLHKAQDEVQKTTDNFVKKADAVLAEKEKEIMEI 184
>gi|348027044|ref|YP_004766849.1| ribosome-recycling factor [Megasphaera elsdenii DSM 20460]
gi|341823098|emb|CCC74022.1| ribosome-recycling factor [Megasphaera elsdenii DSM 20460]
Length = 186
Score = 179 bits (455), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 132/174 (75%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++TI+ ++ +S+RTGR++ ++LD+I V+YYG+P +K +A ++ P+ + I P++
Sbjct: 13 KMDKTIEALKRELSSIRTGRASTSLLDRITVDYYGTPTPVKQVANVSVPEPRMITIAPWE 72
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
L IEKAI+ SDLG+ PNNDG++IRL +PQLT ERRKELSK V+K AE+ KV +RNI
Sbjct: 73 PKMLGEIEKAILKSDLGLNPNNDGKIIRLEIPQLTEERRKELSKKVSKIAEDSKVVIRNI 132
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA + +K++K+K+++ED+ K+ ++QKLTD+ +K ID I +KEKE++ V
Sbjct: 133 RRDANETIKKMEKKKEVTEDDSKEGQENIQKLTDKKIKAIDEIKAKKEKEVMAV 186
>gi|387626302|ref|YP_006062475.1| ribosome recycling factor [Streptococcus pneumoniae INV104]
gi|410476388|ref|YP_006743147.1| ribosome recycling factor [Streptococcus pneumoniae gamPNI0373]
gi|417693864|ref|ZP_12343053.1| ribosome recycling factor [Streptococcus pneumoniae GA47901]
gi|444382190|ref|ZP_21180394.1| ribosome recycling factor [Streptococcus pneumoniae PCS8106]
gi|444384782|ref|ZP_21182873.1| ribosome recycling factor [Streptococcus pneumoniae PCS8203]
gi|444388444|ref|ZP_21186429.1| ribosome recycling factor [Streptococcus pneumoniae PCS125219]
gi|444389923|ref|ZP_21187838.1| ribosome recycling factor [Streptococcus pneumoniae PCS70012]
gi|444392740|ref|ZP_21190437.1| ribosome recycling factor [Streptococcus pneumoniae PCS81218]
gi|444395843|ref|ZP_21193382.1| ribosome recycling factor [Streptococcus pneumoniae PNI0002]
gi|444397402|ref|ZP_21194885.1| ribosome recycling factor [Streptococcus pneumoniae PNI0006]
gi|444401126|ref|ZP_21198431.1| ribosome recycling factor [Streptococcus pneumoniae PNI0007]
gi|444401944|ref|ZP_21199123.1| ribosome recycling factor [Streptococcus pneumoniae PNI0008]
gi|444405084|ref|ZP_21202009.1| ribosome recycling factor [Streptococcus pneumoniae PNI0009]
gi|444408619|ref|ZP_21205252.1| ribosome recycling factor [Streptococcus pneumoniae PNI0010]
gi|444409477|ref|ZP_21206069.1| ribosome recycling factor [Streptococcus pneumoniae PNI0076]
gi|444411701|ref|ZP_21208029.1| ribosome recycling factor [Streptococcus pneumoniae PNI0153]
gi|444414434|ref|ZP_21210703.1| ribosome recycling factor [Streptococcus pneumoniae PNI0199]
gi|444418556|ref|ZP_21214530.1| ribosome recycling factor [Streptococcus pneumoniae PNI0360]
gi|444421168|ref|ZP_21216920.1| ribosome recycling factor [Streptococcus pneumoniae PNI0427]
gi|444422386|ref|ZP_21218043.1| ribosome recycling factor [Streptococcus pneumoniae PNI0446]
gi|301794085|emb|CBW36491.1| ribosome recycling factor [Streptococcus pneumoniae INV104]
gi|332204947|gb|EGJ19012.1| ribosome recycling factor [Streptococcus pneumoniae GA47901]
gi|406369333|gb|AFS43023.1| ribosome recycling factor [Streptococcus pneumoniae gamPNI0373]
gi|444249501|gb|ELU55991.1| ribosome recycling factor [Streptococcus pneumoniae PCS125219]
gi|444251542|gb|ELU58011.1| ribosome recycling factor [Streptococcus pneumoniae PCS8203]
gi|444253150|gb|ELU59609.1| ribosome recycling factor [Streptococcus pneumoniae PCS8106]
gi|444255844|gb|ELU62184.1| ribosome recycling factor [Streptococcus pneumoniae PNI0002]
gi|444256386|gb|ELU62724.1| ribosome recycling factor [Streptococcus pneumoniae PCS70012]
gi|444260059|gb|ELU66367.1| ribosome recycling factor [Streptococcus pneumoniae PNI0006]
gi|444262897|gb|ELU69146.1| ribosome recycling factor [Streptococcus pneumoniae PCS81218]
gi|444264033|gb|ELU70149.1| ribosome recycling factor [Streptococcus pneumoniae PNI0007]
gi|444267415|gb|ELU73320.1| ribosome recycling factor [Streptococcus pneumoniae PNI0008]
gi|444269446|gb|ELU75253.1| ribosome recycling factor [Streptococcus pneumoniae PNI0010]
gi|444275598|gb|ELU81220.1| ribosome recycling factor [Streptococcus pneumoniae PNI0153]
gi|444275657|gb|ELU81277.1| ribosome recycling factor [Streptococcus pneumoniae PNI0009]
gi|444279515|gb|ELU84911.1| ribosome recycling factor [Streptococcus pneumoniae PNI0076]
gi|444281152|gb|ELU86482.1| ribosome recycling factor [Streptococcus pneumoniae PNI0360]
gi|444282099|gb|ELU87382.1| ribosome recycling factor [Streptococcus pneumoniae PNI0199]
gi|444283069|gb|ELU88281.1| ribosome recycling factor [Streptococcus pneumoniae PNI0427]
gi|444288316|gb|ELU93213.1| ribosome recycling factor [Streptococcus pneumoniae PNI0446]
Length = 185
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 92/181 (50%), Positives = 125/181 (69%), Gaps = 1/181 (0%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
IEK K RM ++ + F +R GR+N ++LD+I VEYYG L IA I P++
Sbjct: 6 IEK-AKERMTQSHQSLAREFGGIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K E
Sbjct: 65 LLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVVPALTEETRRDLAKEVKKVGENA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVAVRNIRRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKELL+
Sbjct: 125 KVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|300812543|ref|ZP_07092960.1| ribosome recycling factor [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|300496416|gb|EFK31521.1| ribosome recycling factor [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
Length = 185
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 85/173 (49%), Positives = 126/173 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K+ M ++I++ ++N +VR G +N ++LD++ VEYYG P L +A I P+ L+I P
Sbjct: 10 KSNMNKSIEVYQSNLATVRAGVANASLLDRVMVEYYGVPTPLVQLAGITIPEPRVLMITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+SL IE AI++SDLG+TP NDG VIRL +PQLT ERR+E++K V K AEE K+AVR
Sbjct: 70 YDKTSLNDIEHAILASDLGLTPANDGNVIRLVIPQLTGERRQEIAKEVGKLAEEAKIAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
N+R++A+KA +K +K+ +++ED + L ++QK+TDE KKID + K KE+
Sbjct: 130 NVRQEAMKALKKQEKDGEITEDEERRLEKEVQKVTDESTKKIDQMADNKRKEI 182
>gi|238916787|ref|YP_002930304.1| ribosome recycling factor [Eubacterium eligens ATCC 27750]
gi|238872147|gb|ACR71857.1| ribosome recycling factor [Eubacterium eligens ATCC 27750]
Length = 187
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 81/179 (45%), Positives = 129/179 (72%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
KD++ RM++++D ++ + ++R GR+NP +LD++ V+YYG+P ++ +A ++ P++ +
Sbjct: 9 KDIEGRMQKSVDNLKEEYVTIRAGRANPHILDRLRVDYYGTPTPIQQVANVSVPEARMIQ 68
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP++ S +K IEKAI+ SDLG+TPNNDG+ IRL P+LT +RRKEL+K + K+ + KV
Sbjct: 69 IQPWEASLIKDIEKAILVSDLGLTPNNDGKTIRLVFPELTEDRRKELAKDIKKKGDNAKV 128
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RNIRRDA A +K K +S+D K+ ++QK+TD+Y+ IDS K KE+L V
Sbjct: 129 AIRNIRRDANDAIKKENKAGDISDDEAKNSEDEIQKITDKYIAMIDSAIDDKTKEILTV 187
>gi|228992552|ref|ZP_04152479.1| Ribosome-recycling factor [Bacillus pseudomycoides DSM 12442]
gi|228767186|gb|EEM15822.1| Ribosome-recycling factor [Bacillus pseudomycoides DSM 12442]
Length = 185
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 124/174 (71%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+ME+ + SVR GR++ + LDK++V+YYG+P + +A I P++ L+IQPYD
Sbjct: 12 KMEKAVAAYSRELASVRAGRASASALDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+S+ IEKAI+ +DLG+ P+NDG VIR+ P LT ERR++L K V K AEE KVAVRN+
Sbjct: 72 KTSIGDIEKAILKADLGLNPSNDGSVIRIAFPALTEERRRDLVKTVKKYAEEAKVAVRNV 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA +KL+K ++ED+++ + D+QK TD+Y+ K+D I K KEKE+++V
Sbjct: 132 RRDANDDLKKLEKAGDITEDDLRGYTEDIQKETDKYIAKVDEITKNKEKEIMEV 185
>gi|414158286|ref|ZP_11414580.1| ribosome-recycling factor [Streptococcus sp. F0441]
gi|410870831|gb|EKS18788.1| ribosome-recycling factor [Streptococcus sp. F0441]
Length = 185
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 91/181 (50%), Positives = 125/181 (69%), Gaps = 1/181 (0%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
IEK K RM ++ + F +R GR+N ++LD+I VEYYG L IA I P++
Sbjct: 6 IEK-AKERMTQSHHSLAREFGGIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K E
Sbjct: 65 LLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVA+RNIRRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKELL+
Sbjct: 125 KVAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|333378577|ref|ZP_08470308.1| ribosome-recycling factor [Dysgonomonas mossii DSM 22836]
gi|332883553|gb|EGK03836.1| ribosome-recycling factor [Dysgonomonas mossii DSM 22836]
Length = 187
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 88/186 (47%), Positives = 135/186 (72%), Gaps = 1/186 (0%)
Query: 91 AEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINT 150
A+ IE+ +A+M +++ + + +R G++NP +LD I++EYYGS L +A INT
Sbjct: 3 ADLKQIEQKAEAKMLASVEFLDETLSRIRAGKANPHILDGIKLEYYGSITPLSGVAAINT 62
Query: 151 PDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 210
PD+ ++++QP++K LK +EKAI++SD+G+TP+N+GEVIRL++P LT ERRK L K +
Sbjct: 63 PDARTIIVQPWEKQMLKEVEKAILNSDVGITPDNNGEVIRLSIPPLTEERRKLLVKQAKQ 122
Query: 211 QAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKE 270
+AE+ KV+VRN RRDA+ +K KE L+ED KD +++QKL D+Y+KKID ++ KE
Sbjct: 123 EAEDAKVSVRNARRDAIDTIKKSVKE-GLAEDVAKDGENEMQKLHDKYIKKIDDLFALKE 181
Query: 271 KELLKV 276
KE+L V
Sbjct: 182 KEILTV 187
>gi|22537655|ref|NP_688506.1| ribosome recycling factor [Streptococcus agalactiae 2603V/R]
gi|25011612|ref|NP_736007.1| ribosome recycling factor [Streptococcus agalactiae NEM316]
gi|76788564|ref|YP_330142.1| ribosome recycling factor [Streptococcus agalactiae A909]
gi|76799120|ref|ZP_00781307.1| ribosome recycling factor [Streptococcus agalactiae 18RS21]
gi|77405174|ref|ZP_00782272.1| ribosome recycling factor [Streptococcus agalactiae H36B]
gi|77411699|ref|ZP_00788038.1| ribosome recycling factor [Streptococcus agalactiae CJB111]
gi|77413972|ref|ZP_00790145.1| ribosome recycling factor [Streptococcus agalactiae 515]
gi|339301080|ref|ZP_08650202.1| ribosome recycling factor [Streptococcus agalactiae ATCC 13813]
gi|406709898|ref|YP_006764624.1| ribosome recycling factor [Streptococcus agalactiae GD201008-001]
gi|417005914|ref|ZP_11944484.1| ribosome recycling factor [Streptococcus agalactiae FSL S3-026]
gi|421147181|ref|ZP_15606872.1| ribosome recycling factor [Streptococcus agalactiae GB00112]
gi|424049039|ref|ZP_17786590.1| ribosome recycling factor [Streptococcus agalactiae ZQ0910]
gi|54039298|sp|P66741.1|RRF_STRA5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|54042006|sp|P66740.1|RRF_STRA3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|123601478|sp|Q3K011.1|RRF_STRA1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|22534542|gb|AAN00379.1|AE014261_7 ribosome recycling factor [Streptococcus agalactiae 2603V/R]
gi|24413152|emb|CAD47230.1| ribosome recycling factor [Streptococcus agalactiae NEM316]
gi|76563621|gb|ABA46205.1| ribosome recycling factor [Streptococcus agalactiae A909]
gi|76585524|gb|EAO62095.1| ribosome recycling factor [Streptococcus agalactiae 18RS21]
gi|77159952|gb|EAO71090.1| ribosome recycling factor [Streptococcus agalactiae 515]
gi|77162271|gb|EAO73243.1| ribosome recycling factor [Streptococcus agalactiae CJB111]
gi|77176176|gb|EAO78947.1| ribosome recycling factor [Streptococcus agalactiae H36B]
gi|319745486|gb|EFV97790.1| ribosome recycling factor [Streptococcus agalactiae ATCC 13813]
gi|341576095|gb|EGS26506.1| ribosome recycling factor [Streptococcus agalactiae FSL S3-026]
gi|389649239|gb|EIM70721.1| ribosome recycling factor [Streptococcus agalactiae ZQ0910]
gi|401686126|gb|EJS82115.1| ribosome recycling factor [Streptococcus agalactiae GB00112]
gi|406650783|gb|AFS46184.1| ribosome recycling factor [Streptococcus agalactiae GD201008-001]
Length = 185
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 122/174 (70%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
R E++ + F +R GR+N ++LD+I+VEYYG+P L +A I P++ LLI P+D
Sbjct: 12 RFEQSHQSLSREFAGIRAGRANASLLDRIQVEYYGAPTPLNQLASITVPEARVLLISPFD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KSS+K IE+AI SDLG+ P NDG VIRL +P LT E R++L+K V K E K+A+RNI
Sbjct: 72 KSSIKDIERAINESDLGINPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKIAIRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA+ +K +K K+++ED++K L D+QK TD+ +K ID + KEKELL+V
Sbjct: 132 RRDAMDEAKKQEKNKEITEDDLKSLEKDIQKATDDAVKHIDEMTANKEKELLEV 185
>gi|386818055|ref|ZP_10105273.1| ribosome recycling factor [Thiothrix nivea DSM 5205]
gi|386422631|gb|EIJ36466.1| ribosome recycling factor [Thiothrix nivea DSM 5205]
Length = 185
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 84/181 (46%), Positives = 134/181 (74%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I++D + RM+++I+ ++ + +RTGR++P++LD++ V+YYGS V L +A I T D+ +
Sbjct: 5 IKQDAEQRMQKSIEALKHDLAKIRTGRAHPSLLDQVTVDYYGSEVPLSQVANIGTEDART 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L + P++K IEKAI++S+LG+ P NDG VIR+ LP LT ERR++L KVV +AE
Sbjct: 65 LKVTPWEKPMASKIEKAILTSNLGLNPANDGNVIRVPLPALTEERRRDLVKVVKSEAEGA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
+VA+RNIRRDA ++ L KEK++SED + + D+QKLTD Y+K+++ + ++KEKEL++
Sbjct: 125 RVAIRNIRRDANSDFKSLLKEKEISEDEERRAADDIQKLTDRYIKEVEVVLEKKEKELME 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|358464713|ref|ZP_09174673.1| ribosome recycling factor [Streptococcus sp. oral taxon 058 str.
F0407]
gi|357066584|gb|EHI76729.1| ribosome recycling factor [Streptococcus sp. oral taxon 058 str.
F0407]
Length = 185
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 89/183 (48%), Positives = 126/183 (68%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K RM ++ + F +R GR+N ++LD++ VEYYG L IA I P++
Sbjct: 3 NAIVEKAKERMTQSHHSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K E
Sbjct: 63 RVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
KVAVRNIRRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKEL
Sbjct: 123 NAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKEL 182
Query: 274 LKV 276
L+V
Sbjct: 183 LEV 185
>gi|313124038|ref|YP_004034297.1| ribosome-recycling factor [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|312280601|gb|ADQ61320.1| Ribosome-recycling factor [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
Length = 185
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/173 (49%), Positives = 126/173 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K+ M ++I++ ++N +VR G +N ++LD++ VEYYG P L +A I P+ L+I P
Sbjct: 10 KSNMNKSIEVYQSNLATVRAGVANASLLDRVMVEYYGVPTPLVQMAGITIPEPRVLVITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+SL IE AI++SDLG+TP NDG VIRL +PQLT ERR+E++K V K AEE K+AVR
Sbjct: 70 YDKTSLNDIEHAILASDLGLTPANDGNVIRLVIPQLTGERRQEIAKEVGKLAEEAKIAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
N+R++A+KA +K +K+ +++ED + L ++QK+TDE KKID + K KE+
Sbjct: 130 NVRQEAMKALKKQEKDGEITEDEERRLEKEVQKITDESTKKIDQMADNKRKEI 182
>gi|169333879|ref|ZP_02861072.1| hypothetical protein ANASTE_00265 [Anaerofustis stercorihominis DSM
17244]
gi|169259444|gb|EDS73410.1| ribosome recycling factor [Anaerofustis stercorihominis DSM 17244]
Length = 185
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/167 (47%), Positives = 126/167 (75%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
++ K +M + ++ +++N N++R GR+NP MLD+I V+YYG+P + +A I+ P+ +
Sbjct: 5 VQNQAKEKMIKAVENLQSNLNALRAGRANPKMLDRIMVDYYGTPTPVNQMASISAPEPRT 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L +QP+D+S+L IEKAI+SSDLG+ P+NDG+VIRL +PQLT ERRKEL K+ K+ E
Sbjct: 65 LTVQPWDQSALGLIEKAIMSSDLGLNPSNDGKVIRLVIPQLTEERRKELVKLAQKEGENA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKI 262
KVAVRNIRR ++ + QK+ +L+ED++KD ++QKLT++Y+K++
Sbjct: 125 KVAVRNIRRHTIQTLKDEQKKGELTEDSLKDAEDEMQKLTNDYIKEV 171
>gi|238924132|ref|YP_002937648.1| ribosome recycling factor [Eubacterium rectale ATCC 33656]
gi|259494542|sp|C4ZA73.1|RRF_EUBR3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|238875807|gb|ACR75514.1| ribosome recycling factor [Eubacterium rectale ATCC 33656]
gi|291524866|emb|CBK90453.1| ribosome recycling factor [Eubacterium rectale DSM 17629]
gi|291529007|emb|CBK94593.1| ribosome recycling factor [Eubacterium rectale M104/1]
Length = 184
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 126/174 (72%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+ME+T++ + + +R GR+NP +LDK+ V+YYG+P ++S+A ++ P+ + IQP++
Sbjct: 11 KMEKTLNNLEEEYAGIRAGRANPHILDKLRVDYYGTPSPIQSVANVSVPEPRMIQIQPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
S +K IEKAI SD+G+ P NDG++IRL P+LT ERRK+L+K + K+ EE KVAVRNI
Sbjct: 71 ASMVKEIEKAINCSDIGINPTNDGKLIRLVFPELTEERRKDLAKDIKKKGEEAKVAVRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA+ + +K KE+ +SED +K L D QKLTD+++ K+D+ K KE+L V
Sbjct: 131 RRDAIDSIKKTGKEEGISEDEIKGLEDDAQKLTDKFVAKVDAAVDAKCKEILTV 184
>gi|405761070|ref|YP_006701666.1| ribosome recycling factor [Streptococcus pneumoniae SPNA45]
gi|404277959|emb|CCM08530.1| ribosome recycling factor [Streptococcus pneumoniae SPNA45]
Length = 185
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/181 (50%), Positives = 125/181 (69%), Gaps = 1/181 (0%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
IEK K RM ++ + F +R GR+N ++LD++ VEYYG L IA I P++
Sbjct: 6 IEK-AKERMAQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K E
Sbjct: 65 LLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVAVRNIRRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKELL+
Sbjct: 125 KVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|386737646|ref|YP_006210827.1| Ribosome recycling factor [Bacillus anthracis str. H9401]
gi|384387498|gb|AFH85159.1| Ribosome recycling factor [Bacillus anthracis str. H9401]
Length = 185
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 125/174 (71%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+ME+ + +VR GR++ + LDK++V+YYG+P + +A I P++ L+IQPYD
Sbjct: 12 KMEKAVAAYSRELATVRAGRASASALDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+S+ IEKAI+ +DLG+ P+NDG VIR+ P LT ERR++L KVV K AEE KVAVRN+
Sbjct: 72 KTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNV 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD +KL+K +++ED+++ + D+QK TD+Y+ K+D I K KEKE+++V
Sbjct: 132 RRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIMEV 185
>gi|225858740|ref|YP_002740250.1| ribosome recycling factor [Streptococcus pneumoniae 70585]
gi|289167793|ref|YP_003446062.1| ribosome recycling factor [Streptococcus mitis B6]
gi|307704917|ref|ZP_07641808.1| ribosome recycling factor [Streptococcus mitis SK597]
gi|307706446|ref|ZP_07643255.1| ribosome recycling factor [Streptococcus mitis SK321]
gi|307708583|ref|ZP_07645047.1| ribosome recycling factor [Streptococcus mitis NCTC 12261]
gi|307709131|ref|ZP_07645590.1| ribosome recycling factor [Streptococcus mitis SK564]
gi|322376444|ref|ZP_08050937.1| ribosome recycling factor [Streptococcus sp. M334]
gi|342163966|ref|YP_004768605.1| ribosome recycling factor [Streptococcus pseudopneumoniae IS7493]
gi|383937989|ref|ZP_09991218.1| ribosome recycling factor [Streptococcus pseudopneumoniae SK674]
gi|385262543|ref|ZP_10040647.1| ribosome recycling factor [Streptococcus sp. SK643]
gi|387759197|ref|YP_006066175.1| ribosome recycling factor [Streptococcus pneumoniae INV200]
gi|417848222|ref|ZP_12494171.1| ribosome recycling factor [Streptococcus mitis SK1073]
gi|417849165|ref|ZP_12495090.1| ribosome recycling factor [Streptococcus mitis SK1080]
gi|417923273|ref|ZP_12566742.1| ribosome recycling factor [Streptococcus mitis SK569]
gi|418166569|ref|ZP_12803225.1| ribosome recycling factor [Streptococcus pneumoniae GA17971]
gi|418193572|ref|ZP_12830064.1| ribosome recycling factor [Streptococcus pneumoniae GA47439]
gi|418967445|ref|ZP_13519108.1| ribosome recycling factor [Streptococcus mitis SK616]
gi|418973817|ref|ZP_13521778.1| ribosome recycling factor [Streptococcus pseudopneumoniae ATCC
BAA-960]
gi|418977663|ref|ZP_13525477.1| ribosome recycling factor [Streptococcus mitis SK575]
gi|419442429|ref|ZP_13982460.1| ribosome recycling factor [Streptococcus pneumoniae GA13224]
gi|419514497|ref|ZP_14054124.1| ribosome recycling factor [Streptococcus pneumoniae England14-9]
gi|421227105|ref|ZP_15683814.1| ribosome recycling factor [Streptococcus pneumoniae 2072047]
gi|254809532|sp|C1C6S4.1|RRF_STRP7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|225721445|gb|ACO17299.1| ribosome recycling factor [Streptococcus pneumoniae 70585]
gi|288907360|emb|CBJ22197.1| ribosome recycling factor [Streptococcus mitis B6]
gi|301801786|emb|CBW34497.1| ribosome recycling factor [Streptococcus pneumoniae INV200]
gi|307615332|gb|EFN94541.1| ribosome recycling factor [Streptococcus mitis NCTC 12261]
gi|307618156|gb|EFN97314.1| ribosome recycling factor [Streptococcus mitis SK321]
gi|307620077|gb|EFN99194.1| ribosome recycling factor [Streptococcus mitis SK564]
gi|307621531|gb|EFO00577.1| ribosome recycling factor [Streptococcus mitis SK597]
gi|321282251|gb|EFX59258.1| ribosome recycling factor [Streptococcus sp. M334]
gi|339454969|gb|EGP67582.1| ribosome recycling factor [Streptococcus mitis SK1073]
gi|339456792|gb|EGP69374.1| ribosome recycling factor [Streptococcus mitis SK1080]
gi|341933848|gb|AEL10745.1| ribosome recycling factor [Streptococcus pseudopneumoniae IS7493]
gi|342837077|gb|EGU71276.1| ribosome recycling factor [Streptococcus mitis SK569]
gi|353830165|gb|EHE10295.1| ribosome recycling factor [Streptococcus pneumoniae GA17971]
gi|353859552|gb|EHE39502.1| ribosome recycling factor [Streptococcus pneumoniae GA47439]
gi|379554396|gb|EHZ19476.1| ribosome recycling factor [Streptococcus pneumoniae GA13224]
gi|379637593|gb|EIA02146.1| ribosome recycling factor [Streptococcus pneumoniae England14-9]
gi|383344058|gb|EID22228.1| ribosome recycling factor [Streptococcus mitis SK616]
gi|383346776|gb|EID24794.1| ribosome recycling factor [Streptococcus pseudopneumoniae ATCC
BAA-960]
gi|383349631|gb|EID27560.1| ribosome recycling factor [Streptococcus mitis SK575]
gi|383715117|gb|EID71094.1| ribosome recycling factor [Streptococcus pseudopneumoniae SK674]
gi|385190444|gb|EIF37891.1| ribosome recycling factor [Streptococcus sp. SK643]
gi|395596344|gb|EJG56563.1| ribosome recycling factor [Streptococcus pneumoniae 2072047]
Length = 185
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/181 (50%), Positives = 125/181 (69%), Gaps = 1/181 (0%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
IEK K RM ++ + F +R GR+N ++LD++ VEYYG L IA I P++
Sbjct: 6 IEK-AKERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K E
Sbjct: 65 LLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVAVRNIRRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKELL+
Sbjct: 125 KVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|374323500|ref|YP_005076629.1| ribosome recycling factor [Paenibacillus terrae HPL-003]
gi|357202509|gb|AET60406.1| ribosome recycling factor [Paenibacillus terrae HPL-003]
Length = 184
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/182 (46%), Positives = 129/182 (70%), Gaps = 1/182 (0%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
S++K + RM + I ++ + S+R GR+ PA+LD+++VEYYG+ + +A +NTPDS
Sbjct: 4 SVKKSAEERMHKAIQSLQRDLASLRAGRATPALLDRVQVEYYGAMTPVNQLANVNTPDSR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
+L+IQP+DK+SL IE+AI SDLG+TP+NDG IRL++P LT ERR +L K+ K EE
Sbjct: 64 TLMIQPWDKTSLADIERAIQKSDLGLTPSNDGNTIRLSIPALTEERRTDLVKLTKKNGEE 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
KVA+RNIRRDA +K++K +SED + ++QK TD+++ ++D + KEKE++
Sbjct: 124 AKVAIRNIRRDANDDIKKMEK-TDISEDESRKYQEEIQKTTDKFIAEVDKVLAAKEKEIM 182
Query: 275 KV 276
+V
Sbjct: 183 EV 184
>gi|357055615|ref|ZP_09116682.1| ribosome-recycling factor [Clostridium clostridioforme 2_1_49FAA]
gi|355382279|gb|EHG29379.1| ribosome-recycling factor [Clostridium clostridioforme 2_1_49FAA]
Length = 183
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 133/174 (76%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +T+D++ +++ ++R GR+NP +LDKI+V+YYG+P L+ + ++ P++ ++IQP++
Sbjct: 10 KMNKTLDVLLSDYGTIRAGRANPHVLDKIKVDYYGTPTPLQQVGNVSVPEARMIVIQPWE 69
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS LK IEKAI++S+LG+ P NDG IRL P++T ERR+E+SK V K+ + KVA+RNI
Sbjct: 70 KSLLKPIEKAILTSELGINPTNDGNCIRLVFPEMTEERRREVSKDVKKKGDNAKVALRNI 129
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA +A++K +K +SED++ +++ +QKLTD+ ++K+D ++K KE++ V
Sbjct: 130 RRDANEAFKKAEKAGDISEDDLTEMTEKMQKLTDKMVEKVDKAVEEKTKEIMTV 183
>gi|326204054|ref|ZP_08193915.1| ribosome recycling factor [Clostridium papyrosolvens DSM 2782]
gi|325985821|gb|EGD46656.1| ribosome recycling factor [Clostridium papyrosolvens DSM 2782]
Length = 185
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/179 (45%), Positives = 130/179 (72%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K ++ +M++TI++++ N +R GR+NPA+LDK+ ++YYG+ ++ IA ++ P++ +L
Sbjct: 7 KPIEEKMKKTINVLKDNLAGIRAGRANPAILDKLTIDYYGAATPIQQIATVSVPEARVIL 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP++ LK IEK I SD+G+ PNNDG+VIRL P LT ERRKEL+K K+ EE KV
Sbjct: 67 IQPWEAKLLKDIEKEIQKSDIGINPNNDGKVIRLVFPALTEERRKELTKQAKKEGEESKV 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+R+IRRD+++ + +K +++ED++KD D+Q LTD Y+ ID I + K+KE+++V
Sbjct: 127 AIRSIRRDSIEGMKSKKKNGEITEDDLKDAEKDIQNLTDRYIADIDKIIEAKDKEIMEV 185
>gi|306825442|ref|ZP_07458782.1| ribosome recycling factor [Streptococcus sp. oral taxon 071 str.
73H25AP]
gi|304432380|gb|EFM35356.1| ribosome recycling factor [Streptococcus sp. oral taxon 071 str.
73H25AP]
Length = 185
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 89/183 (48%), Positives = 126/183 (68%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K RM ++ + F +R GR+N ++LD+I VEYYG L IA I P++
Sbjct: 3 NAIVEKAKERMTQSHQSLAREFGGIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K E
Sbjct: 63 RVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
KVA+RNIRRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKEL
Sbjct: 123 NAKVAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKEL 182
Query: 274 LKV 276
L+V
Sbjct: 183 LEV 185
>gi|392531186|ref|ZP_10278323.1| ribosome recycling factor [Carnobacterium maltaromaticum ATCC
35586]
gi|414084080|ref|YP_006992788.1| ribosome recycling factor [Carnobacterium maltaromaticum LMA28]
gi|412997664|emb|CCO11473.1| ribosome recycling factor [Carnobacterium maltaromaticum LMA28]
Length = 185
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 127/178 (71%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ K +M + ++ S+R GR+N ++LD+I+VEYYG+P L +A I P++ L++
Sbjct: 8 EAKEKMTKAEQALQRELGSIRAGRANASILDRIQVEYYGAPTPLNQLASITIPEARVLMV 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
P+DK+SL+ IE+A++ SD+G+TP NDG VIRL +P LT ERRKEL+K V K+AE KV
Sbjct: 68 SPFDKTSLQDIERALMQSDVGITPTNDGNVIRLVIPMLTEERRKELAKRVKKEAENSKVT 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRNIRRD + +K +K K+++ED +++ ++ QKLTD+ +K +D I KEKELL+V
Sbjct: 128 VRNIRRDLIDELKKAEKNKEMTEDELRNYETEAQKLTDDSVKNLDKIAADKEKELLEV 185
>gi|218133702|ref|ZP_03462506.1| hypothetical protein BACPEC_01571 [[Bacteroides] pectinophilus ATCC
43243]
gi|217991077|gb|EEC57083.1| ribosome recycling factor [[Bacteroides] pectinophilus ATCC 43243]
Length = 183
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 126/174 (72%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M+++++ + ++ ++R GR+NP +LDKI V+YY +P L+ +A I+ P++ + IQP+D
Sbjct: 10 KMKKSVEALLEDYKTIRAGRANPHILDKIRVDYYNTPTPLQQVANISVPEARIIQIQPWD 69
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
S +K IEKAI+ SDLG+TPNNDG+VIRL P+LT +RRKELSK V K+ E KVA+RN+
Sbjct: 70 ASLIKEIEKAIIVSDLGLTPNNDGKVIRLVFPELTEDRRKELSKDVKKKGENAKVAIRNV 129
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA ++K K ++SED +KD +QK+TD+Y+ ++D K KE++ V
Sbjct: 130 RRDANDVFKKQNKANEISEDELKDAEDSIQKITDKYITEVDKCVDDKIKEVMTV 183
>gi|339639936|ref|ZP_08661380.1| ribosome recycling factor [Streptococcus sp. oral taxon 056 str.
F0418]
gi|339453205|gb|EGP65820.1| ribosome recycling factor [Streptococcus sp. oral taxon 056 str.
F0418]
Length = 185
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/183 (49%), Positives = 127/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K RM ++ + F SVR GR+N ++LD+I VEYYG L IA I P++
Sbjct: 3 NAIVEKAKERMTQSHQSLAREFGSVRAGRANASLLDRISVEYYGVDTPLNQIASITIPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+ P+DKSSLK IE+AI +SDLG+TP +DG VIRL +P LT E R++L+K V K E
Sbjct: 63 RVLLVTPFDKSSLKDIERAINASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKIGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
K+A+RNIRRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKEL
Sbjct: 123 NAKIAIRNIRRDAMDEAKKQEKAKEITEDELKGLEKDIQKVTDDAVKHIDEMTAHKEKEL 182
Query: 274 LKV 276
L+V
Sbjct: 183 LEV 185
>gi|397905297|ref|ZP_10506160.1| Ribosome recycling factor [Caloramator australicus RC3]
gi|397161656|emb|CCJ33494.1| Ribosome recycling factor [Caloramator australicus RC3]
Length = 184
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 127/174 (72%), Gaps = 1/174 (0%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++++++++ S++ GR+NPAMLDKI V+YYG+P + S+A I P+ LLIQP+D
Sbjct: 12 KMKKSLELLKHELQSLKAGRANPAMLDKITVDYYGTPTHISSLATITVPEPRVLLIQPWD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS +KSIEKAI SDLG+ P DG V+RL +P+LT E RK L KVV K E+ KVA+R+I
Sbjct: 72 KSVVKSIEKAIQKSDLGINPVADGNVVRLVIPELTEETRKNLVKVVKKHGEDAKVAIRSI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA + + L+KE +SED +K ++QK+TD ++K+ID + + KEKE++ V
Sbjct: 132 RRDANEKIKALKKE-GVSEDEIKRAEDEIQKMTDNFIKEIDKLVEAKEKEIMTV 184
>gi|168491033|ref|ZP_02715176.1| ribosome recycling factor [Streptococcus pneumoniae CDC0288-04]
gi|419479770|ref|ZP_14019577.1| ribosome recycling factor [Streptococcus pneumoniae GA19101]
gi|419495259|ref|ZP_14034977.1| ribosome recycling factor [Streptococcus pneumoniae GA47461]
gi|419499460|ref|ZP_14039159.1| ribosome recycling factor [Streptococcus pneumoniae GA47597]
gi|421303161|ref|ZP_15753825.1| ribosome recycling factor [Streptococcus pneumoniae GA17484]
gi|183574722|gb|EDT95250.1| ribosome recycling factor [Streptococcus pneumoniae CDC0288-04]
gi|379570936|gb|EHZ35895.1| ribosome recycling factor [Streptococcus pneumoniae GA19101]
gi|379595341|gb|EHZ60149.1| ribosome recycling factor [Streptococcus pneumoniae GA47461]
gi|379602514|gb|EHZ67285.1| ribosome recycling factor [Streptococcus pneumoniae GA47597]
gi|395901783|gb|EJH12719.1| ribosome recycling factor [Streptococcus pneumoniae GA17484]
gi|429317760|emb|CCP37560.1| ribosome recycling factor [Streptococcus pneumoniae SPN034156]
Length = 185
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/181 (50%), Positives = 125/181 (69%), Gaps = 1/181 (0%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
IEK K RM ++ + F +R GR+N ++LD++ VEYYG L IA I P++
Sbjct: 6 IEK-AKERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K E
Sbjct: 65 LLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVAVRNIRRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKELL+
Sbjct: 125 KVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|148984686|ref|ZP_01817954.1| ribosome recycling factor [Streptococcus pneumoniae SP3-BS71]
gi|148988384|ref|ZP_01819831.1| ribosome recycling factor [Streptococcus pneumoniae SP6-BS73]
gi|148998620|ref|ZP_01826060.1| ribosome recycling factor [Streptococcus pneumoniae SP11-BS70]
gi|149002494|ref|ZP_01827428.1| ribosome recycling factor [Streptococcus pneumoniae SP14-BS69]
gi|149006380|ref|ZP_01830092.1| ribosome recycling factor [Streptococcus pneumoniae SP18-BS74]
gi|168485896|ref|ZP_02710404.1| ribosome recycling factor [Streptococcus pneumoniae CDC1087-00]
gi|168575607|ref|ZP_02721543.1| ribosome recycling factor [Streptococcus pneumoniae MLV-016]
gi|169832481|ref|YP_001694393.1| ribosome recycling factor [Streptococcus pneumoniae Hungary19A-6]
gi|194397625|ref|YP_002037583.1| ribosome recycling factor [Streptococcus pneumoniae G54]
gi|221231712|ref|YP_002510864.1| ribosome recycling factor [Streptococcus pneumoniae ATCC 700669]
gi|225854450|ref|YP_002735962.1| ribosome recycling factor [Streptococcus pneumoniae JJA]
gi|225861166|ref|YP_002742675.1| ribosome recycling factor [Streptococcus pneumoniae Taiwan19F-14]
gi|237650519|ref|ZP_04524771.1| ribosome recycling factor [Streptococcus pneumoniae CCRI 1974]
gi|237820813|ref|ZP_04596658.1| ribosome recycling factor [Streptococcus pneumoniae CCRI 1974M2]
gi|298230564|ref|ZP_06964245.1| ribosome recycling factor [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298254562|ref|ZP_06978148.1| ribosome recycling factor [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298503047|ref|YP_003724987.1| ribosome recycling factor [Streptococcus pneumoniae TCH8431/19A]
gi|307067602|ref|YP_003876568.1| ribosome recycling factor [Streptococcus pneumoniae AP200]
gi|307127503|ref|YP_003879534.1| ribosome recycling factor [Streptococcus pneumoniae 670-6B]
gi|387757336|ref|YP_006064315.1| ribosome recycling factor [Streptococcus pneumoniae OXC141]
gi|387788384|ref|YP_006253452.1| ribosome recycling factor [Streptococcus pneumoniae ST556]
gi|415698148|ref|ZP_11457059.1| ribosome recycling factor [Streptococcus pneumoniae 459-5]
gi|415749343|ref|ZP_11477287.1| ribosome recycling factor [Streptococcus pneumoniae SV35]
gi|415752027|ref|ZP_11479138.1| ribosome recycling factor [Streptococcus pneumoniae SV36]
gi|417312514|ref|ZP_12099226.1| ribosome recycling factor [Streptococcus pneumoniae GA04375]
gi|417676699|ref|ZP_12326110.1| ribosome recycling factor [Streptococcus pneumoniae GA17545]
gi|417686387|ref|ZP_12335665.1| ribosome recycling factor [Streptococcus pneumoniae GA41301]
gi|417698359|ref|ZP_12347532.1| ribosome recycling factor [Streptococcus pneumoniae GA41317]
gi|418073726|ref|ZP_12710984.1| ribosome recycling factor [Streptococcus pneumoniae GA11184]
gi|418076048|ref|ZP_12713287.1| ribosome recycling factor [Streptococcus pneumoniae GA47502]
gi|418078435|ref|ZP_12715658.1| ribosome recycling factor [Streptococcus pneumoniae 4027-06]
gi|418080399|ref|ZP_12717611.1| ribosome recycling factor [Streptococcus pneumoniae 6735-05]
gi|418082868|ref|ZP_12720069.1| ribosome recycling factor [Streptococcus pneumoniae GA44288]
gi|418085009|ref|ZP_12722193.1| ribosome recycling factor [Streptococcus pneumoniae GA47281]
gi|418089338|ref|ZP_12726495.1| ribosome recycling factor [Streptococcus pneumoniae GA43265]
gi|418093772|ref|ZP_12730901.1| ribosome recycling factor [Streptococcus pneumoniae GA49138]
gi|418096054|ref|ZP_12733169.1| ribosome recycling factor [Streptococcus pneumoniae GA16531]
gi|418098315|ref|ZP_12735414.1| ribosome recycling factor [Streptococcus pneumoniae 6901-05]
gi|418100770|ref|ZP_12737856.1| ribosome recycling factor [Streptococcus pneumoniae 7286-06]
gi|418105004|ref|ZP_12742063.1| ribosome recycling factor [Streptococcus pneumoniae GA44500]
gi|418112298|ref|ZP_12749300.1| ribosome recycling factor [Streptococcus pneumoniae GA41538]
gi|418114441|ref|ZP_12751431.1| ribosome recycling factor [Streptococcus pneumoniae 5787-06]
gi|418116681|ref|ZP_12753652.1| ribosome recycling factor [Streptococcus pneumoniae 6963-05]
gi|418118767|ref|ZP_12755724.1| ribosome recycling factor [Streptococcus pneumoniae GA18523]
gi|418121017|ref|ZP_12757963.1| ribosome recycling factor [Streptococcus pneumoniae GA44194]
gi|418123215|ref|ZP_12760149.1| ribosome recycling factor [Streptococcus pneumoniae GA44378]
gi|418127802|ref|ZP_12764698.1| ribosome recycling factor [Streptococcus pneumoniae NP170]
gi|418130109|ref|ZP_12766993.1| ribosome recycling factor [Streptococcus pneumoniae GA07643]
gi|418135004|ref|ZP_12771861.1| ribosome recycling factor [Streptococcus pneumoniae GA11426]
gi|418136976|ref|ZP_12773818.1| ribosome recycling factor [Streptococcus pneumoniae GA11663]
gi|418141530|ref|ZP_12778343.1| ribosome recycling factor [Streptococcus pneumoniae GA13455]
gi|418143755|ref|ZP_12780555.1| ribosome recycling factor [Streptococcus pneumoniae GA13494]
gi|418146166|ref|ZP_12782948.1| ribosome recycling factor [Streptococcus pneumoniae GA13637]
gi|418148370|ref|ZP_12785135.1| ribosome recycling factor [Streptococcus pneumoniae GA13856]
gi|418150408|ref|ZP_12787159.1| ribosome recycling factor [Streptococcus pneumoniae GA14798]
gi|418152675|ref|ZP_12789415.1| ribosome recycling factor [Streptococcus pneumoniae GA16121]
gi|418154979|ref|ZP_12791710.1| ribosome recycling factor [Streptococcus pneumoniae GA16242]
gi|418157592|ref|ZP_12794308.1| ribosome recycling factor [Streptococcus pneumoniae GA16833]
gi|418159621|ref|ZP_12796320.1| ribosome recycling factor [Streptococcus pneumoniae GA17227]
gi|418164804|ref|ZP_12801474.1| ribosome recycling factor [Streptococcus pneumoniae GA17371]
gi|418171460|ref|ZP_12808084.1| ribosome recycling factor [Streptococcus pneumoniae GA19451]
gi|418173314|ref|ZP_12809928.1| ribosome recycling factor [Streptococcus pneumoniae GA41277]
gi|418177974|ref|ZP_12814558.1| ribosome recycling factor [Streptococcus pneumoniae GA41565]
gi|418182574|ref|ZP_12819135.1| ribosome recycling factor [Streptococcus pneumoniae GA43380]
gi|418184760|ref|ZP_12821307.1| ribosome recycling factor [Streptococcus pneumoniae GA47283]
gi|418186956|ref|ZP_12823485.1| ribosome recycling factor [Streptococcus pneumoniae GA47360]
gi|418189176|ref|ZP_12825691.1| ribosome recycling factor [Streptococcus pneumoniae GA47373]
gi|418197768|ref|ZP_12834231.1| ribosome recycling factor [Streptococcus pneumoniae GA47778]
gi|418216393|ref|ZP_12843117.1| ribosome recycling factor [Streptococcus pneumoniae
Netherlands15B-37]
gi|418223525|ref|ZP_12850165.1| ribosome recycling factor [Streptococcus pneumoniae 5185-06]
gi|418225368|ref|ZP_12851997.1| ribosome recycling factor [Streptococcus pneumoniae NP112]
gi|418227525|ref|ZP_12854144.1| ribosome recycling factor [Streptococcus pneumoniae 3063-00]
gi|418229691|ref|ZP_12856297.1| ribosome recycling factor [Streptococcus pneumoniae EU-NP01]
gi|418232012|ref|ZP_12858599.1| ribosome recycling factor [Streptococcus pneumoniae GA07228]
gi|418236451|ref|ZP_12863019.1| ribosome recycling factor [Streptococcus pneumoniae GA19690]
gi|419424966|ref|ZP_13965165.1| ribosome recycling factor [Streptococcus pneumoniae 7533-05]
gi|419427390|ref|ZP_13967573.1| ribosome recycling factor [Streptococcus pneumoniae 5652-06]
gi|419429102|ref|ZP_13969269.1| ribosome recycling factor [Streptococcus pneumoniae GA11856]
gi|419431340|ref|ZP_13971485.1| ribosome recycling factor [Streptococcus pneumoniae EU-NP05]
gi|419433598|ref|ZP_13973716.1| ribosome recycling factor [Streptococcus pneumoniae GA40183]
gi|419435808|ref|ZP_13975901.1| ribosome recycling factor [Streptococcus pneumoniae 8190-05]
gi|419438041|ref|ZP_13978111.1| ribosome recycling factor [Streptococcus pneumoniae GA13499]
gi|419440160|ref|ZP_13980212.1| ribosome recycling factor [Streptococcus pneumoniae GA40410]
gi|419444841|ref|ZP_13984856.1| ribosome recycling factor [Streptococcus pneumoniae GA19923]
gi|419446985|ref|ZP_13986990.1| ribosome recycling factor [Streptococcus pneumoniae 7879-04]
gi|419448581|ref|ZP_13988578.1| ribosome recycling factor [Streptococcus pneumoniae 4075-00]
gi|419451279|ref|ZP_13991265.1| ribosome recycling factor [Streptococcus pneumoniae EU-NP02]
gi|419453150|ref|ZP_13993123.1| ribosome recycling factor [Streptococcus pneumoniae EU-NP03]
gi|419457323|ref|ZP_13997268.1| ribosome recycling factor [Streptococcus pneumoniae GA02254]
gi|419463981|ref|ZP_14003874.1| ribosome recycling factor [Streptococcus pneumoniae GA04175]
gi|419466387|ref|ZP_14006270.1| ribosome recycling factor [Streptococcus pneumoniae GA05248]
gi|419470899|ref|ZP_14010758.1| ribosome recycling factor [Streptococcus pneumoniae GA07914]
gi|419473006|ref|ZP_14012857.1| ribosome recycling factor [Streptococcus pneumoniae GA13430]
gi|419477609|ref|ZP_14017434.1| ribosome recycling factor [Streptococcus pneumoniae GA18068]
gi|419481967|ref|ZP_14021760.1| ribosome recycling factor [Streptococcus pneumoniae GA40563]
gi|419490864|ref|ZP_14030604.1| ribosome recycling factor [Streptococcus pneumoniae GA47179]
gi|419493085|ref|ZP_14032812.1| ribosome recycling factor [Streptococcus pneumoniae GA47210]
gi|419497127|ref|ZP_14036837.1| ribosome recycling factor [Streptococcus pneumoniae GA47522]
gi|419501671|ref|ZP_14041357.1| ribosome recycling factor [Streptococcus pneumoniae GA47628]
gi|419503758|ref|ZP_14043427.1| ribosome recycling factor [Streptococcus pneumoniae GA47760]
gi|419505878|ref|ZP_14045539.1| ribosome recycling factor [Streptococcus pneumoniae GA49194]
gi|419510566|ref|ZP_14050210.1| ribosome recycling factor [Streptococcus pneumoniae NP141]
gi|419512341|ref|ZP_14051975.1| ribosome recycling factor [Streptococcus pneumoniae GA05578]
gi|419516619|ref|ZP_14056237.1| ribosome recycling factor [Streptococcus pneumoniae GA02506]
gi|419518734|ref|ZP_14058341.1| ribosome recycling factor [Streptococcus pneumoniae GA08825]
gi|419520879|ref|ZP_14060475.1| ribosome recycling factor [Streptococcus pneumoniae GA05245]
gi|419527665|ref|ZP_14067208.1| ribosome recycling factor [Streptococcus pneumoniae GA17719]
gi|419530251|ref|ZP_14069781.1| ribosome recycling factor [Streptococcus pneumoniae GA40028]
gi|419532174|ref|ZP_14071691.1| ribosome recycling factor [Streptococcus pneumoniae GA47794]
gi|419534408|ref|ZP_14073911.1| ribosome recycling factor [Streptococcus pneumoniae GA17457]
gi|421211048|ref|ZP_15668032.1| ribosome recycling factor [Streptococcus pneumoniae 2070035]
gi|421212970|ref|ZP_15669931.1| ribosome recycling factor [Streptococcus pneumoniae 2070108]
gi|421215174|ref|ZP_15672102.1| ribosome recycling factor [Streptococcus pneumoniae 2070109]
gi|421217464|ref|ZP_15674365.1| ribosome recycling factor [Streptococcus pneumoniae 2070335]
gi|421231716|ref|ZP_15688361.1| ribosome recycling factor [Streptococcus pneumoniae 2080076]
gi|421233928|ref|ZP_15690550.1| ribosome recycling factor [Streptococcus pneumoniae 2061617]
gi|421236088|ref|ZP_15692689.1| ribosome recycling factor [Streptococcus pneumoniae 2071004]
gi|421238576|ref|ZP_15695144.1| ribosome recycling factor [Streptococcus pneumoniae 2071247]
gi|421242894|ref|ZP_15699415.1| ribosome recycling factor [Streptococcus pneumoniae 2081074]
gi|421244766|ref|ZP_15701267.1| ribosome recycling factor [Streptococcus pneumoniae 2081685]
gi|421249237|ref|ZP_15705699.1| ribosome recycling factor [Streptococcus pneumoniae 2082239]
gi|421270594|ref|ZP_15721450.1| ribosome recycling factor [Streptococcus pneumoniae SPAR48]
gi|421274846|ref|ZP_15725678.1| ribosome recycling factor [Streptococcus pneumoniae GA52612]
gi|421280930|ref|ZP_15731728.1| ribosome recycling factor [Streptococcus pneumoniae GA04672]
gi|421283134|ref|ZP_15733921.1| ribosome recycling factor [Streptococcus pneumoniae GA04216]
gi|421298411|ref|ZP_15749099.1| ribosome recycling factor [Streptococcus pneumoniae GA60080]
gi|421304899|ref|ZP_15755555.1| ribosome recycling factor [Streptococcus pneumoniae GA62331]
gi|421307214|ref|ZP_15757859.1| ribosome recycling factor [Streptococcus pneumoniae GA60132]
gi|421314111|ref|ZP_15764701.1| ribosome recycling factor [Streptococcus pneumoniae GA47562]
gi|226749942|sp|B5E448.1|RRF_STRP4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|238688288|sp|B1IBA8.1|RRF_STRPI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|254809533|sp|B8ZP45.1|RRF_STRPJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|254809535|sp|C1CDU1.1|RRF_STRZJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|254809537|sp|C1CRV3.1|RRF_STRZT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|147755618|gb|EDK62665.1| ribosome recycling factor [Streptococcus pneumoniae SP11-BS70]
gi|147759431|gb|EDK66423.1| ribosome recycling factor [Streptococcus pneumoniae SP14-BS69]
gi|147762157|gb|EDK69119.1| ribosome recycling factor [Streptococcus pneumoniae SP18-BS74]
gi|147923077|gb|EDK74192.1| ribosome recycling factor [Streptococcus pneumoniae SP3-BS71]
gi|147926065|gb|EDK77139.1| ribosome recycling factor [Streptococcus pneumoniae SP6-BS73]
gi|168994983|gb|ACA35595.1| ribosome recycling factor [Streptococcus pneumoniae Hungary19A-6]
gi|183571057|gb|EDT91585.1| ribosome recycling factor [Streptococcus pneumoniae CDC1087-00]
gi|183578469|gb|EDT98997.1| ribosome recycling factor [Streptococcus pneumoniae MLV-016]
gi|194357292|gb|ACF55740.1| ribosome recycling factor [Streptococcus pneumoniae G54]
gi|220674172|emb|CAR68698.1| ribosome recycling factor [Streptococcus pneumoniae ATCC 700669]
gi|225723622|gb|ACO19475.1| ribosome recycling factor [Streptococcus pneumoniae JJA]
gi|225727526|gb|ACO23377.1| ribosome recycling factor [Streptococcus pneumoniae Taiwan19F-14]
gi|298238642|gb|ADI69773.1| ribosome recycling factor [Streptococcus pneumoniae TCH8431/19A]
gi|301799925|emb|CBW32506.1| ribosome recycling factor [Streptococcus pneumoniae OXC141]
gi|306409139|gb|ADM84566.1| Ribosome recycling factor [Streptococcus pneumoniae AP200]
gi|306484565|gb|ADM91434.1| ribosome recycling factor [Streptococcus pneumoniae 670-6B]
gi|327389222|gb|EGE87567.1| ribosome recycling factor [Streptococcus pneumoniae GA04375]
gi|332075559|gb|EGI86027.1| ribosome recycling factor [Streptococcus pneumoniae GA17545]
gi|332076224|gb|EGI86690.1| ribosome recycling factor [Streptococcus pneumoniae GA41301]
gi|332202800|gb|EGJ16869.1| ribosome recycling factor [Streptococcus pneumoniae GA41317]
gi|353747626|gb|EHD28282.1| ribosome recycling factor [Streptococcus pneumoniae 4027-06]
gi|353749837|gb|EHD30480.1| ribosome recycling factor [Streptococcus pneumoniae GA47502]
gi|353750573|gb|EHD31211.1| ribosome recycling factor [Streptococcus pneumoniae GA11184]
gi|353752939|gb|EHD33563.1| ribosome recycling factor [Streptococcus pneumoniae 6735-05]
gi|353756781|gb|EHD37380.1| ribosome recycling factor [Streptococcus pneumoniae GA44288]
gi|353758704|gb|EHD39292.1| ribosome recycling factor [Streptococcus pneumoniae GA47281]
gi|353762024|gb|EHD42587.1| ribosome recycling factor [Streptococcus pneumoniae GA43265]
gi|353765648|gb|EHD46190.1| ribosome recycling factor [Streptococcus pneumoniae GA49138]
gi|353769675|gb|EHD50191.1| ribosome recycling factor [Streptococcus pneumoniae 6901-05]
gi|353771041|gb|EHD51552.1| ribosome recycling factor [Streptococcus pneumoniae GA16531]
gi|353772706|gb|EHD53211.1| ribosome recycling factor [Streptococcus pneumoniae 7286-06]
gi|353778074|gb|EHD58544.1| ribosome recycling factor [Streptococcus pneumoniae GA44500]
gi|353784164|gb|EHD64585.1| ribosome recycling factor [Streptococcus pneumoniae GA41538]
gi|353787183|gb|EHD67590.1| ribosome recycling factor [Streptococcus pneumoniae 5787-06]
gi|353789658|gb|EHD70050.1| ribosome recycling factor [Streptococcus pneumoniae 6963-05]
gi|353790719|gb|EHD71100.1| ribosome recycling factor [Streptococcus pneumoniae GA18523]
gi|353793844|gb|EHD74203.1| ribosome recycling factor [Streptococcus pneumoniae GA44194]
gi|353797302|gb|EHD77637.1| ribosome recycling factor [Streptococcus pneumoniae GA44378]
gi|353800263|gb|EHD80577.1| ribosome recycling factor [Streptococcus pneumoniae NP170]
gi|353803401|gb|EHD83693.1| ribosome recycling factor [Streptococcus pneumoniae GA07643]
gi|353805781|gb|EHD86055.1| ribosome recycling factor [Streptococcus pneumoniae GA13455]
gi|353809496|gb|EHD89756.1| ribosome recycling factor [Streptococcus pneumoniae GA13494]
gi|353813045|gb|EHD93278.1| ribosome recycling factor [Streptococcus pneumoniae GA13856]
gi|353814962|gb|EHD95184.1| ribosome recycling factor [Streptococcus pneumoniae GA13637]
gi|353815916|gb|EHD96128.1| ribosome recycling factor [Streptococcus pneumoniae GA14798]
gi|353819320|gb|EHD99518.1| ribosome recycling factor [Streptococcus pneumoniae GA16121]
gi|353821354|gb|EHE01530.1| ribosome recycling factor [Streptococcus pneumoniae GA17227]
gi|353823271|gb|EHE03446.1| ribosome recycling factor [Streptococcus pneumoniae GA16242]
gi|353824040|gb|EHE04214.1| ribosome recycling factor [Streptococcus pneumoniae GA16833]
gi|353829665|gb|EHE09796.1| ribosome recycling factor [Streptococcus pneumoniae GA17371]
gi|353835197|gb|EHE15291.1| ribosome recycling factor [Streptococcus pneumoniae GA19451]
gi|353840013|gb|EHE20087.1| ribosome recycling factor [Streptococcus pneumoniae GA41277]
gi|353844748|gb|EHE24791.1| ribosome recycling factor [Streptococcus pneumoniae GA41565]
gi|353850811|gb|EHE30815.1| ribosome recycling factor [Streptococcus pneumoniae GA43380]
gi|353851296|gb|EHE31292.1| ribosome recycling factor [Streptococcus pneumoniae GA47283]
gi|353852781|gb|EHE32767.1| ribosome recycling factor [Streptococcus pneumoniae GA47360]
gi|353856318|gb|EHE36287.1| ribosome recycling factor [Streptococcus pneumoniae GA47373]
gi|353863924|gb|EHE43843.1| ribosome recycling factor [Streptococcus pneumoniae GA47778]
gi|353873444|gb|EHE53305.1| ribosome recycling factor [Streptococcus pneumoniae
Netherlands15B-37]
gi|353878323|gb|EHE58153.1| ribosome recycling factor [Streptococcus pneumoniae 5185-06]
gi|353882676|gb|EHE62487.1| ribosome recycling factor [Streptococcus pneumoniae NP112]
gi|353883126|gb|EHE62935.1| ribosome recycling factor [Streptococcus pneumoniae 3063-00]
gi|353886739|gb|EHE66519.1| ribosome recycling factor [Streptococcus pneumoniae GA07228]
gi|353889597|gb|EHE69367.1| ribosome recycling factor [Streptococcus pneumoniae EU-NP01]
gi|353892683|gb|EHE72431.1| ribosome recycling factor [Streptococcus pneumoniae GA19690]
gi|353901603|gb|EHE77135.1| ribosome recycling factor [Streptococcus pneumoniae GA11663]
gi|353902241|gb|EHE77771.1| ribosome recycling factor [Streptococcus pneumoniae GA11426]
gi|379138126|gb|AFC94917.1| ribosome recycling factor [Streptococcus pneumoniae ST556]
gi|379532321|gb|EHY97550.1| ribosome recycling factor [Streptococcus pneumoniae GA02254]
gi|379538046|gb|EHZ03227.1| ribosome recycling factor [Streptococcus pneumoniae GA13499]
gi|379539200|gb|EHZ04379.1| ribosome recycling factor [Streptococcus pneumoniae GA04175]
gi|379539893|gb|EHZ05070.1| ribosome recycling factor [Streptococcus pneumoniae GA05245]
gi|379544510|gb|EHZ09654.1| ribosome recycling factor [Streptococcus pneumoniae GA05248]
gi|379545615|gb|EHZ10754.1| ribosome recycling factor [Streptococcus pneumoniae GA07914]
gi|379551050|gb|EHZ16145.1| ribosome recycling factor [Streptococcus pneumoniae GA11856]
gi|379552513|gb|EHZ17602.1| ribosome recycling factor [Streptococcus pneumoniae GA13430]
gi|379565142|gb|EHZ30135.1| ribosome recycling factor [Streptococcus pneumoniae GA17457]
gi|379565818|gb|EHZ30809.1| ribosome recycling factor [Streptococcus pneumoniae GA17719]
gi|379566991|gb|EHZ31978.1| ribosome recycling factor [Streptococcus pneumoniae GA18068]
gi|379572534|gb|EHZ37491.1| ribosome recycling factor [Streptococcus pneumoniae GA19923]
gi|379574250|gb|EHZ39194.1| ribosome recycling factor [Streptococcus pneumoniae GA40028]
gi|379576599|gb|EHZ41523.1| ribosome recycling factor [Streptococcus pneumoniae GA40183]
gi|379579927|gb|EHZ44823.1| ribosome recycling factor [Streptococcus pneumoniae GA40410]
gi|379580841|gb|EHZ45730.1| ribosome recycling factor [Streptococcus pneumoniae GA40563]
gi|379594443|gb|EHZ59253.1| ribosome recycling factor [Streptococcus pneumoniae GA47179]
gi|379595123|gb|EHZ59932.1| ribosome recycling factor [Streptococcus pneumoniae GA47210]
gi|379601120|gb|EHZ65896.1| ribosome recycling factor [Streptococcus pneumoniae GA47522]
gi|379602032|gb|EHZ66804.1| ribosome recycling factor [Streptococcus pneumoniae GA47628]
gi|379606344|gb|EHZ71092.1| ribosome recycling factor [Streptococcus pneumoniae GA47794]
gi|379606435|gb|EHZ71182.1| ribosome recycling factor [Streptococcus pneumoniae GA47760]
gi|379607792|gb|EHZ72538.1| ribosome recycling factor [Streptococcus pneumoniae GA49194]
gi|379614525|gb|EHZ79235.1| ribosome recycling factor [Streptococcus pneumoniae 7879-04]
gi|379615943|gb|EHZ80644.1| ribosome recycling factor [Streptococcus pneumoniae 8190-05]
gi|379618843|gb|EHZ83518.1| ribosome recycling factor [Streptococcus pneumoniae 5652-06]
gi|379620295|gb|EHZ84954.1| ribosome recycling factor [Streptococcus pneumoniae 7533-05]
gi|379622984|gb|EHZ87618.1| ribosome recycling factor [Streptococcus pneumoniae EU-NP02]
gi|379623639|gb|EHZ88272.1| ribosome recycling factor [Streptococcus pneumoniae 4075-00]
gi|379626859|gb|EHZ91475.1| ribosome recycling factor [Streptococcus pneumoniae EU-NP03]
gi|379630706|gb|EHZ95287.1| ribosome recycling factor [Streptococcus pneumoniae EU-NP05]
gi|379633759|gb|EHZ98328.1| ribosome recycling factor [Streptococcus pneumoniae NP141]
gi|379636811|gb|EIA01369.1| ribosome recycling factor [Streptococcus pneumoniae GA05578]
gi|379640622|gb|EIA05161.1| ribosome recycling factor [Streptococcus pneumoniae GA02506]
gi|379641713|gb|EIA06248.1| ribosome recycling factor [Streptococcus pneumoniae GA08825]
gi|381309723|gb|EIC50556.1| ribosome recycling factor [Streptococcus pneumoniae SV36]
gi|381317153|gb|EIC57883.1| ribosome recycling factor [Streptococcus pneumoniae 459-5]
gi|381317637|gb|EIC58362.1| ribosome recycling factor [Streptococcus pneumoniae SV35]
gi|395573771|gb|EJG34358.1| ribosome recycling factor [Streptococcus pneumoniae 2070035]
gi|395580557|gb|EJG41038.1| ribosome recycling factor [Streptococcus pneumoniae 2070108]
gi|395581307|gb|EJG41779.1| ribosome recycling factor [Streptococcus pneumoniae 2070109]
gi|395584950|gb|EJG45342.1| ribosome recycling factor [Streptococcus pneumoniae 2070335]
gi|395596206|gb|EJG56428.1| ribosome recycling factor [Streptococcus pneumoniae 2080076]
gi|395602056|gb|EJG62200.1| ribosome recycling factor [Streptococcus pneumoniae 2071247]
gi|395602825|gb|EJG62967.1| ribosome recycling factor [Streptococcus pneumoniae 2061617]
gi|395605007|gb|EJG65139.1| ribosome recycling factor [Streptococcus pneumoniae 2071004]
gi|395609266|gb|EJG69353.1| ribosome recycling factor [Streptococcus pneumoniae 2081685]
gi|395609593|gb|EJG69679.1| ribosome recycling factor [Streptococcus pneumoniae 2081074]
gi|395614538|gb|EJG74557.1| ribosome recycling factor [Streptococcus pneumoniae 2082239]
gi|395868389|gb|EJG79507.1| ribosome recycling factor [Streptococcus pneumoniae SPAR48]
gi|395875574|gb|EJG86655.1| ribosome recycling factor [Streptococcus pneumoniae GA52612]
gi|395881097|gb|EJG92146.1| ribosome recycling factor [Streptococcus pneumoniae GA04216]
gi|395882091|gb|EJG93138.1| ribosome recycling factor [Streptococcus pneumoniae GA04672]
gi|395902367|gb|EJH13300.1| ribosome recycling factor [Streptococcus pneumoniae GA60080]
gi|395905561|gb|EJH16466.1| ribosome recycling factor [Streptococcus pneumoniae GA62331]
gi|395908315|gb|EJH19197.1| ribosome recycling factor [Streptococcus pneumoniae GA60132]
gi|395914611|gb|EJH25455.1| ribosome recycling factor [Streptococcus pneumoniae GA47562]
gi|429319305|emb|CCP32557.1| ribosome recycling factor [Streptococcus pneumoniae SPN034183]
gi|429321120|emb|CCP34531.1| ribosome recycling factor [Streptococcus pneumoniae SPN994039]
gi|429322940|emb|CCP30572.1| ribosome recycling factor [Streptococcus pneumoniae SPN994038]
Length = 185
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/181 (50%), Positives = 125/181 (69%), Gaps = 1/181 (0%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
IEK K RM ++ + F +R GR+N ++LD++ VEYYG L IA I P++
Sbjct: 6 IEK-AKERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K E
Sbjct: 65 LLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVAVRNIRRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKELL+
Sbjct: 125 KVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|220927898|ref|YP_002504807.1| ribosome recycling factor [Clostridium cellulolyticum H10]
gi|219998226|gb|ACL74827.1| ribosome recycling factor [Clostridium cellulolyticum H10]
Length = 185
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 132/179 (73%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K ++ +M++TI+++R N +R GR+NPA+LDK+ ++YYG+P ++ +A ++ P++ +L
Sbjct: 7 KPIEEKMKKTINVLRDNLAGIRAGRANPAILDKLTIDYYGAPTPIQQVATVSIPEARVIL 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP++ LK IEK I SD+G+ PNNDG+V+RL P LT ERR+EL+K K+ EE K+
Sbjct: 67 IQPWEAKLLKDIEKEIQKSDIGINPNNDGKVLRLVFPALTEERRRELTKQAKKEGEESKI 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+R+IRRD+++ + +K +++ED++KD D+Q +TD Y+ +ID + + K+KE+++V
Sbjct: 127 AIRSIRRDSIETMKAKKKSGEITEDDLKDAEKDIQNITDRYIAEIDRVIEAKDKEIMEV 185
>gi|331084701|ref|ZP_08333789.1| ribosome-recycling factor [Lachnospiraceae bacterium 9_1_43BFAA]
gi|330410795|gb|EGG90217.1| ribosome-recycling factor [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 183
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 127/174 (72%), Gaps = 1/174 (0%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+ME++ + + + ++R GR+NP +LDK+ V+YYGSP ++ +A ++ P++ + IQP++
Sbjct: 11 KMEKSYNSLTSELATIRAGRANPHVLDKLTVDYYGSPTPIQQVANVSVPEARMIQIQPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS +K IEKAI++SD+G+ P NDG VIRL P+LT ERRKEL K V K+ E GKVAVRNI
Sbjct: 71 KSMVKEIEKAILTSDIGINPTNDGTVIRLVFPELTEERRKELVKDVKKKGEAGKVAVRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD ++KL K ++SED +KDL +LQKLTD+Y+ +I+ + K KE++ V
Sbjct: 131 RRDGNDTFKKL-KGTEVSEDEIKDLEDELQKLTDKYIAQIEKAVEAKSKEVMTV 183
>gi|229019019|ref|ZP_04175860.1| Ribosome-recycling factor [Bacillus cereus AH1273]
gi|229025264|ref|ZP_04181684.1| Ribosome-recycling factor [Bacillus cereus AH1272]
gi|423389869|ref|ZP_17367095.1| ribosome-recycling factor [Bacillus cereus BAG1X1-3]
gi|228736017|gb|EEL86592.1| Ribosome-recycling factor [Bacillus cereus AH1272]
gi|228742259|gb|EEL92418.1| Ribosome-recycling factor [Bacillus cereus AH1273]
gi|401641960|gb|EJS59677.1| ribosome-recycling factor [Bacillus cereus BAG1X1-3]
Length = 185
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 125/174 (71%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+ME+ + +VR GR++ ++LDK++V+YYG+P + +A I P++ L+IQPYD
Sbjct: 12 KMEKAVAAYSRELATVRAGRASSSVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+S+ IEKAI+ +DLG+ P+NDG VIR+ P LT ERR++L KVV K AEE KVAVRN+
Sbjct: 72 KTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNV 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD +KL+K ++ED+++ + D+QK TD+Y+ K+D I K KEKE+++V
Sbjct: 132 RRDGNDDLKKLEKAGDITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIMEV 185
>gi|148992922|ref|ZP_01822541.1| ribosome recycling factor [Streptococcus pneumoniae SP9-BS68]
gi|168490239|ref|ZP_02714438.1| ribosome recycling factor [Streptococcus pneumoniae SP195]
gi|417678898|ref|ZP_12328295.1| ribosome recycling factor [Streptococcus pneumoniae GA17570]
gi|418125552|ref|ZP_12762463.1| ribosome recycling factor [Streptococcus pneumoniae GA44511]
gi|418191490|ref|ZP_12827994.1| ribosome recycling factor [Streptococcus pneumoniae GA47388]
gi|418214116|ref|ZP_12840851.1| ribosome recycling factor [Streptococcus pneumoniae GA54644]
gi|418234142|ref|ZP_12860721.1| ribosome recycling factor [Streptococcus pneumoniae GA08780]
gi|419484191|ref|ZP_14023967.1| ribosome recycling factor [Streptococcus pneumoniae GA43257]
gi|419508014|ref|ZP_14047667.1| ribosome recycling factor [Streptococcus pneumoniae GA49542]
gi|421220094|ref|ZP_15676944.1| ribosome recycling factor [Streptococcus pneumoniae 2070425]
gi|421222421|ref|ZP_15679212.1| ribosome recycling factor [Streptococcus pneumoniae 2070531]
gi|421278719|ref|ZP_15729527.1| ribosome recycling factor [Streptococcus pneumoniae GA17301]
gi|421294233|ref|ZP_15744956.1| ribosome recycling factor [Streptococcus pneumoniae GA56113]
gi|421300794|ref|ZP_15751465.1| ribosome recycling factor [Streptococcus pneumoniae GA19998]
gi|421300810|ref|ZP_15751480.1| ribosome recycling factor [Streptococcus pneumoniae GA19998]
gi|147928374|gb|EDK79390.1| ribosome recycling factor [Streptococcus pneumoniae SP9-BS68]
gi|183571379|gb|EDT91907.1| ribosome recycling factor [Streptococcus pneumoniae SP195]
gi|332073277|gb|EGI83756.1| ribosome recycling factor [Streptococcus pneumoniae GA17570]
gi|353797806|gb|EHD78137.1| ribosome recycling factor [Streptococcus pneumoniae GA44511]
gi|353857391|gb|EHE37354.1| ribosome recycling factor [Streptococcus pneumoniae GA47388]
gi|353871399|gb|EHE51270.1| ribosome recycling factor [Streptococcus pneumoniae GA54644]
gi|353888387|gb|EHE68161.1| ribosome recycling factor [Streptococcus pneumoniae GA08780]
gi|379583702|gb|EHZ48579.1| ribosome recycling factor [Streptococcus pneumoniae GA43257]
gi|379611732|gb|EHZ76454.1| ribosome recycling factor [Streptococcus pneumoniae GA49542]
gi|395588371|gb|EJG48701.1| ribosome recycling factor [Streptococcus pneumoniae 2070425]
gi|395588589|gb|EJG48917.1| ribosome recycling factor [Streptococcus pneumoniae 2070531]
gi|395880152|gb|EJG91205.1| ribosome recycling factor [Streptococcus pneumoniae GA17301]
gi|395894523|gb|EJH05503.1| ribosome recycling factor [Streptococcus pneumoniae GA56113]
gi|395898370|gb|EJH09314.1| ribosome recycling factor [Streptococcus pneumoniae GA19998]
gi|395900218|gb|EJH11157.1| ribosome recycling factor [Streptococcus pneumoniae GA19998]
Length = 185
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/181 (50%), Positives = 125/181 (69%), Gaps = 1/181 (0%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
IEK K RM ++ + F +R GR+N ++LD++ VEYYG L IA I P++
Sbjct: 6 IEK-AKERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K E
Sbjct: 65 LLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVAVRNIRRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKELL+
Sbjct: 125 KVAVRNIRRDAMDEAKKREKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|104774221|ref|YP_619201.1| ribosome recycling factor [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|385815969|ref|YP_005852360.1| Ribosome recycling factor [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
gi|418035071|ref|ZP_12673530.1| hypothetical protein LDBUL1519_00230 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|123077247|sp|Q1G9N9.1|RRF_LACDA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|103423302|emb|CAI98143.1| Ribosome recycling factor [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|325126006|gb|ADY85336.1| Ribosome recycling factor [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
gi|354691009|gb|EHE90949.1| hypothetical protein LDBUL1519_00230 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
Length = 185
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 127/175 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K M ++I++ ++N +VR G +N ++LD++ VEYYG P L +A I P+ L+I P
Sbjct: 10 KRNMNKSIEVYQSNLATVRAGVANASLLDRVMVEYYGVPTPLVQMAGITIPEPRVLMITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+SL IE AI++SDLG+TP NDG VIRL +PQLT ERR+E++K V K AEE K+AVR
Sbjct: 70 YDKTSLNDIEHAILASDLGLTPANDGNVIRLIIPQLTGERRQEIAKEVGKLAEEAKIAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
N+R++A+KA +K +K+ +++ED + L ++QK+TDE KKID + K KE+++
Sbjct: 130 NVRQEAMKALKKQEKDGEITEDEERRLEKEVQKVTDESTKKIDQMADNKRKEIIQ 184
>gi|325290374|ref|YP_004266555.1| ribosome recycling factor [Syntrophobotulus glycolicus DSM 8271]
gi|324965775|gb|ADY56554.1| ribosome recycling factor [Syntrophobotulus glycolicus DSM 8271]
Length = 185
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 134/182 (73%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
+I K+ + +M++T++++R F ++R G +N +MLDKI V+YYG+P + +A I+ P+
Sbjct: 4 TIVKETEEKMKKTLEVLRKEFVTIRAGSANQSMLDKIMVDYYGTPTPINQVANISVPEPR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
L+IQP++K+ ++ +EKAI+ SDLG+ P NDG V+RL +PQLT++RR E+ + V K+AEE
Sbjct: 64 MLVIQPWEKTMIQPVEKAIMKSDLGINPVNDGSVVRLVIPQLTADRRTEIVRTVKKKAEE 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
+V+VRNIRRD + +K++K+K +SED K +QKLTD+Y+K ID + +KEKE+
Sbjct: 124 ARVSVRNIRRDMNEEIKKMEKDKTVSEDESKKGQEKIQKLTDKYIKDIDDVLSKKEKEIT 183
Query: 275 KV 276
+V
Sbjct: 184 EV 185
>gi|385261090|ref|ZP_10039222.1| ribosome recycling factor [Streptococcus sp. SK140]
gi|385189489|gb|EIF36953.1| ribosome recycling factor [Streptococcus sp. SK140]
Length = 185
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 89/183 (48%), Positives = 126/183 (68%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K RM ++ + F S+R GR+N ++LD+I VEYYG L IA I P++
Sbjct: 3 NAIVEKAKERMTQSHHSLAREFGSIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K E
Sbjct: 63 RVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
KVA+RNIRRDA+ +K +K K+++ED +K L D+QK TD+ +K ID + KEKE+
Sbjct: 123 NAKVAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKATDDAVKHIDEMTANKEKEI 182
Query: 274 LKV 276
L+V
Sbjct: 183 LEV 185
>gi|397690682|ref|YP_006527936.1| ribosome recycling factor [Melioribacter roseus P3M]
gi|395812174|gb|AFN74923.1| ribosome recycling factor [Melioribacter roseus P3M]
Length = 186
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/179 (46%), Positives = 130/179 (72%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
KD K RM+++I+ R+ +RTG++ A+LD I+VEYYGS L +A + D+ +L
Sbjct: 8 KDAKNRMDKSIEAFRSEIAKIRTGKATTALLDGIKVEYYGSMSPLNQVANVTVLDAHTLS 67
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I P+DKS + +IEKAI+++DLG+ P NDG I++ +P LT ERRKEL K+V K E+ K+
Sbjct: 68 ITPWDKSVIGAIEKAIMTADLGLNPVNDGTNIKVPIPPLTEERRKELVKLVKKFGEDAKI 127
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RN+RRDA +K++K K+++ED +KDL ++QK+TDE++ K+D + K KEKE+++V
Sbjct: 128 ALRNVRRDANDHLKKMEKNKEITEDQLKDLEKEVQKVTDEHIAKVDEMIKHKEKEIMQV 186
>gi|422843955|ref|ZP_16890665.1| ribosome recycling factor [Lactobacillus delbrueckii subsp. lactis
DSM 20072]
gi|325685953|gb|EGD28016.1| ribosome recycling factor [Lactobacillus delbrueckii subsp. lactis
DSM 20072]
Length = 185
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/173 (49%), Positives = 126/173 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K+ M ++I++ ++N +VR G +N ++LD++ VEYYG P L +A I P+ L+I P
Sbjct: 10 KSNMNKSIEVYQSNLATVRAGVANASLLDRVMVEYYGVPTPLVQMAGITIPEPRVLVITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+SL IE AI++SDLG+TP NDG VIRL +PQLT ERR+E++K V K AEE K+AVR
Sbjct: 70 YDKTSLNDIEHAILASDLGLTPANDGNVIRLVIPQLTGERRQEIAKEVGKLAEEAKIAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
N+R++A+KA +K +K+ +++ED + L ++QK+TDE KKID + K KE+
Sbjct: 130 NVRQEAMKALKKQEKDGEITEDEERRLEKEVQKVTDESTKKIDQMADNKRKEI 182
>gi|302874652|ref|YP_003843285.1| ribosome recycling factor [Clostridium cellulovorans 743B]
gi|307690735|ref|ZP_07633181.1| ribosome recycling factor [Clostridium cellulovorans 743B]
gi|302577509|gb|ADL51521.1| ribosome recycling factor [Clostridium cellulovorans 743B]
Length = 185
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/172 (48%), Positives = 128/172 (74%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++T+ +++ + N+++ G++NP MLD+IEVEYYG+ + +A I+ P+ LLIQP+D
Sbjct: 12 KMKKTVTVLKKDLNTLKAGKANPTMLDRIEVEYYGTMTPINQVANISAPEPRILLIQPWD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K SLK+IEKAI+ SDLG+ PN+DG VIRL +P+LT E R++++K V K E+ KVAVR+I
Sbjct: 72 KGSLKAIEKAILISDLGINPNSDGNVIRLIVPELTEETRRDITKKVKKFGEDAKVAVRSI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
RRDA + L+KE ++ED +K ++QK TD ++K+IDSI KEKE++
Sbjct: 132 RRDANDKIKNLKKENTITEDEMKSAEDNVQKKTDAFVKEIDSIISDKEKEVM 183
>gi|322388009|ref|ZP_08061616.1| ribosome recycling factor [Streptococcus infantis ATCC 700779]
gi|419844260|ref|ZP_14367558.1| ribosome recycling factor [Streptococcus infantis ATCC 700779]
gi|321141282|gb|EFX36780.1| ribosome recycling factor [Streptococcus infantis ATCC 700779]
gi|385702044|gb|EIG39196.1| ribosome recycling factor [Streptococcus infantis ATCC 700779]
Length = 185
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 89/183 (48%), Positives = 126/183 (68%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K RM ++ + F S+R GR+N ++LD+I VEYYG L IA I P++
Sbjct: 3 NAIVEKAKERMTQSHHSLSREFGSIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+ P+DK+SLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K E
Sbjct: 63 RVLLVTPFDKTSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
KVA+RNIRRDA+ +K +K K+++ED +K L D+QK TD+ +K ID + KEKEL
Sbjct: 123 NAKVAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKATDDAVKHIDDMTANKEKEL 182
Query: 274 LKV 276
L+V
Sbjct: 183 LEV 185
>gi|306829302|ref|ZP_07462492.1| ribosome recycling factor [Streptococcus mitis ATCC 6249]
gi|315612956|ref|ZP_07887867.1| ribosome recycling factor [Streptococcus sanguinis ATCC 49296]
gi|322374516|ref|ZP_08049030.1| ribosome recycling factor [Streptococcus sp. C300]
gi|331266588|ref|YP_004326218.1| ribosome recycling factor [Streptococcus oralis Uo5]
gi|406576396|ref|ZP_11052025.1| ribosome recycling factor [Streptococcus sp. GMD6S]
gi|406586389|ref|ZP_11061320.1| ribosome recycling factor [Streptococcus sp. GMD1S]
gi|417915219|ref|ZP_12558840.1| ribosome recycling factor [Streptococcus mitis bv. 2 str. SK95]
gi|418974846|ref|ZP_13522755.1| ribosome recycling factor [Streptococcus oralis SK1074]
gi|419781538|ref|ZP_14307357.1| ribosome recycling factor [Streptococcus oralis SK100]
gi|419782669|ref|ZP_14308467.1| ribosome recycling factor [Streptococcus oralis SK610]
gi|419813610|ref|ZP_14338423.1| ribosome recycling factor [Streptococcus sp. GMD2S]
gi|419816973|ref|ZP_14341144.1| ribosome recycling factor [Streptococcus sp. GMD4S]
gi|304428388|gb|EFM31478.1| ribosome recycling factor [Streptococcus mitis ATCC 6249]
gi|315315066|gb|EFU63107.1| ribosome recycling factor [Streptococcus sanguinis ATCC 49296]
gi|321280016|gb|EFX57055.1| ribosome recycling factor [Streptococcus sp. C300]
gi|326683260|emb|CBZ00878.1| ribosome recycling factor [Streptococcus oralis Uo5]
gi|342835333|gb|EGU69584.1| ribosome recycling factor [Streptococcus mitis bv. 2 str. SK95]
gi|383182882|gb|EIC75430.1| ribosome recycling factor [Streptococcus oralis SK610]
gi|383184138|gb|EIC76665.1| ribosome recycling factor [Streptococcus oralis SK100]
gi|383348217|gb|EID26176.1| ribosome recycling factor [Streptococcus oralis SK1074]
gi|404461403|gb|EKA07334.1| ribosome recycling factor [Streptococcus sp. GMD6S]
gi|404466514|gb|EKA11846.1| ribosome recycling factor [Streptococcus sp. GMD4S]
gi|404472721|gb|EKA17136.1| ribosome recycling factor [Streptococcus sp. GMD2S]
gi|404474069|gb|EKA18389.1| ribosome recycling factor [Streptococcus sp. GMD1S]
Length = 185
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 89/183 (48%), Positives = 126/183 (68%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K RM ++ + F +R GR+N ++LD+I VEYYG L IA I P++
Sbjct: 3 NAIVEKAKERMTQSHQSLAREFGGIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K E
Sbjct: 63 RVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
KVAVRNIRRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKE+
Sbjct: 123 NAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKEI 182
Query: 274 LKV 276
L+V
Sbjct: 183 LEV 185
>gi|218888003|ref|YP_002437324.1| ribosome recycling factor [Desulfovibrio vulgaris str. 'Miyazaki
F']
gi|226703259|sp|B8DSA1.1|RRF_DESVM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|66766332|dbj|BAD99030.1| ribosome recycling factor [Desulfovibrio vulgaris]
gi|218758957|gb|ACL09856.1| ribosome recycling factor [Desulfovibrio vulgaris str. 'Miyazaki
F']
Length = 186
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/182 (47%), Positives = 132/182 (72%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
SI D + RME+ + + F +RTGR++ +++D I+V+YYG+P + +A ++ PDS
Sbjct: 5 SILLDAEERMEKALGSLDREFAKLRTGRASTSLVDNIKVDYYGTPTPISQLASVSVPDSR 64
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
+L IQP+D+S+ + +EKAI+ SDLG+ P NDG++IR+++P LT ERRK+L KV K EE
Sbjct: 65 TLTIQPWDRSAFQLVEKAIMKSDLGLNPVNDGKIIRISIPPLTEERRKDLVKVARKYTEE 124
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
KVAVRN+RRDA A +KL+K K++SED+V+ + D+QKLTD ++ K D KEKE++
Sbjct: 125 AKVAVRNVRRDANDALKKLEKGKEISEDDVRKSTDDVQKLTDRFVAKSDEKCTAKEKEIM 184
Query: 275 KV 276
++
Sbjct: 185 EL 186
>gi|444910050|ref|ZP_21230238.1| Ribosome recycling factor [Cystobacter fuscus DSM 2262]
gi|444719648|gb|ELW60440.1| Ribosome recycling factor [Cystobacter fuscus DSM 2262]
Length = 184
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/178 (48%), Positives = 131/178 (73%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D+K+R+++T+D ++ VRTGR++P +LD I V+YYG+P L +A I +P+ ++I
Sbjct: 7 DLKSRIDKTLDDLKKELTKVRTGRASPNLLDGIRVDYYGTPTPLSGVANITSPEPRLIII 66
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+P++KS LK IEKAI ++LG+ P NDGEVIRL P LT ERRKE++K V + E+ KVA
Sbjct: 67 KPWEKSVLKDIEKAIREANLGINPMNDGEVIRLPFPPLTEERRKEIAKQVKTKGEDHKVA 126
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA +A + K+KK++ED+ K L+ +QK TD+ +KK+D I +KEKE+++V
Sbjct: 127 IRNIRRDANEALKAQLKDKKITEDDSKRLTDKVQKETDDGVKKVDEIISKKEKEVMEV 184
>gi|163941562|ref|YP_001646446.1| ribosome recycling factor [Bacillus weihenstephanensis KBAB4]
gi|229013007|ref|ZP_04170172.1| Ribosome-recycling factor [Bacillus mycoides DSM 2048]
gi|229061427|ref|ZP_04198772.1| Ribosome-recycling factor [Bacillus cereus AH603]
gi|229134631|ref|ZP_04263441.1| Ribosome-recycling factor [Bacillus cereus BDRD-ST196]
gi|229168563|ref|ZP_04296286.1| Ribosome-recycling factor [Bacillus cereus AH621]
gi|229174490|ref|ZP_04302022.1| Ribosome-recycling factor [Bacillus cereus MM3]
gi|423367867|ref|ZP_17345299.1| ribosome-recycling factor [Bacillus cereus VD142]
gi|423401334|ref|ZP_17378507.1| ribosome-recycling factor [Bacillus cereus BAG2X1-2]
gi|423452875|ref|ZP_17429728.1| ribosome-recycling factor [Bacillus cereus BAG5X1-1]
gi|423457993|ref|ZP_17434790.1| ribosome-recycling factor [Bacillus cereus BAG5X2-1]
gi|423470038|ref|ZP_17446782.1| ribosome-recycling factor [Bacillus cereus BAG6O-2]
gi|423477962|ref|ZP_17454677.1| ribosome-recycling factor [Bacillus cereus BAG6X1-1]
gi|423483414|ref|ZP_17460104.1| ribosome-recycling factor [Bacillus cereus BAG6X1-2]
gi|423488999|ref|ZP_17465681.1| ribosome-recycling factor [Bacillus cereus BtB2-4]
gi|423494724|ref|ZP_17471368.1| ribosome-recycling factor [Bacillus cereus CER057]
gi|423498484|ref|ZP_17475101.1| ribosome-recycling factor [Bacillus cereus CER074]
gi|423511858|ref|ZP_17488389.1| ribosome-recycling factor [Bacillus cereus HuA2-1]
gi|423518514|ref|ZP_17494995.1| ribosome-recycling factor [Bacillus cereus HuA2-4]
gi|423522346|ref|ZP_17498819.1| ribosome-recycling factor [Bacillus cereus HuA4-10]
gi|423558613|ref|ZP_17534915.1| ribosome-recycling factor [Bacillus cereus MC67]
gi|423592180|ref|ZP_17568211.1| ribosome-recycling factor [Bacillus cereus VD048]
gi|423598865|ref|ZP_17574865.1| ribosome-recycling factor [Bacillus cereus VD078]
gi|423661337|ref|ZP_17636506.1| ribosome-recycling factor [Bacillus cereus VDM022]
gi|423669398|ref|ZP_17644427.1| ribosome-recycling factor [Bacillus cereus VDM034]
gi|423674423|ref|ZP_17649362.1| ribosome-recycling factor [Bacillus cereus VDM062]
gi|229564221|sp|A9VT62.1|RRF_BACWK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|163863759|gb|ABY44818.1| ribosome recycling factor [Bacillus weihenstephanensis KBAB4]
gi|228609050|gb|EEK66340.1| Ribosome-recycling factor [Bacillus cereus MM3]
gi|228614969|gb|EEK72071.1| Ribosome-recycling factor [Bacillus cereus AH621]
gi|228648892|gb|EEL04917.1| Ribosome-recycling factor [Bacillus cereus BDRD-ST196]
gi|228717850|gb|EEL69498.1| Ribosome-recycling factor [Bacillus cereus AH603]
gi|228748261|gb|EEL98121.1| Ribosome-recycling factor [Bacillus mycoides DSM 2048]
gi|401082728|gb|EJP90993.1| ribosome-recycling factor [Bacillus cereus VD142]
gi|401139434|gb|EJQ46996.1| ribosome-recycling factor [Bacillus cereus BAG5X1-1]
gi|401140965|gb|EJQ48520.1| ribosome-recycling factor [Bacillus cereus BAG6X1-2]
gi|401148377|gb|EJQ55870.1| ribosome-recycling factor [Bacillus cereus BAG5X2-1]
gi|401150817|gb|EJQ58269.1| ribosome-recycling factor [Bacillus cereus CER057]
gi|401160533|gb|EJQ67911.1| ribosome-recycling factor [Bacillus cereus CER074]
gi|401160722|gb|EJQ68097.1| ribosome-recycling factor [Bacillus cereus HuA2-4]
gi|401175040|gb|EJQ82243.1| ribosome-recycling factor [Bacillus cereus HuA4-10]
gi|401191881|gb|EJQ98903.1| ribosome-recycling factor [Bacillus cereus MC67]
gi|401232313|gb|EJR38815.1| ribosome-recycling factor [Bacillus cereus VD048]
gi|401237135|gb|EJR43592.1| ribosome-recycling factor [Bacillus cereus VD078]
gi|401298525|gb|EJS04125.1| ribosome-recycling factor [Bacillus cereus VDM034]
gi|401301378|gb|EJS06967.1| ribosome-recycling factor [Bacillus cereus VDM022]
gi|401309974|gb|EJS15307.1| ribosome-recycling factor [Bacillus cereus VDM062]
gi|401654324|gb|EJS71867.1| ribosome-recycling factor [Bacillus cereus BAG2X1-2]
gi|402428124|gb|EJV60221.1| ribosome-recycling factor [Bacillus cereus BAG6X1-1]
gi|402432247|gb|EJV64306.1| ribosome-recycling factor [Bacillus cereus BtB2-4]
gi|402437290|gb|EJV69314.1| ribosome-recycling factor [Bacillus cereus BAG6O-2]
gi|402450119|gb|EJV81953.1| ribosome-recycling factor [Bacillus cereus HuA2-1]
Length = 185
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 126/174 (72%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+ME+ + +VR GR++ ++LDK++V+YYG+P + +A I P++ L+IQPYD
Sbjct: 12 KMEKAVAAYSRELATVRAGRASSSVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+S+ IEKAI+ +DLG+ P+NDG VIR+ P LT ERR++L KVV K AEE KVAVRN+
Sbjct: 72 KTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNV 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD+ +KL+K ++ED+++ + D+QK TD+Y+ K+D I K KEKE+++V
Sbjct: 132 RRDSNDDLKKLEKAGDITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIMEV 185
>gi|257784511|ref|YP_003179728.1| ribosome recycling factor [Atopobium parvulum DSM 20469]
gi|257473018|gb|ACV51137.1| ribosome recycling factor [Atopobium parvulum DSM 20469]
Length = 181
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 128/177 (72%), Gaps = 3/177 (1%)
Query: 100 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQ 159
K ME+ I+ ++ NF VRTGR+NP LD I+V+YYG P + +A I P++S LL++
Sbjct: 8 AKQSMEKCIEALKNNFGRVRTGRANPHALDHIKVDYYGQPTPISQLAAIKVPEASMLLVE 67
Query: 160 PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAV 219
P+DK++LKSIEKAI SSDLG+TP+NDG IRL P T ERR+EL+K ++ AEE +VA+
Sbjct: 68 PWDKTALKSIEKAIESSDLGITPSNDGSAIRLPFPMPTEERRRELAKECSQIAEEARVAI 127
Query: 220 RNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RN+RRD K++++++LSED+ K + +QKLTD Y+ +I+S+ K K E++++
Sbjct: 128 RNVRRD---INGKIERDEELSEDDQKREKNGIQKLTDTYIAQIESLLKTKTSEIMEI 181
>gi|293365195|ref|ZP_06611912.1| ribosome recycling factor [Streptococcus oralis ATCC 35037]
gi|307703733|ref|ZP_07640674.1| ribosome recycling factor [Streptococcus oralis ATCC 35037]
gi|291316645|gb|EFE57081.1| ribosome recycling factor [Streptococcus oralis ATCC 35037]
gi|307622568|gb|EFO01564.1| ribosome recycling factor [Streptococcus oralis ATCC 35037]
Length = 185
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/183 (48%), Positives = 126/183 (68%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K RM ++ + F +R GR+N ++LD+I VEYYG L IA I P++
Sbjct: 3 NAIVEKAKERMTQSHQSLAREFGGIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+ P+D+SSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K E
Sbjct: 63 RVLLVTPFDRSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
KVAVRNIRRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKEL
Sbjct: 123 NAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKEL 182
Query: 274 LKV 276
L+V
Sbjct: 183 LEV 185
>gi|170017339|ref|YP_001728258.1| ribosome recycling factor [Leuconostoc citreum KM20]
gi|414597764|ref|ZP_11447322.1| Ribosome-recycling factor [Leuconostoc citreum LBAE E16]
gi|190360251|sp|B1MZ62.1|RRF_LEUCK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|169804196|gb|ACA82814.1| Ribosome recycling factor [Leuconostoc citreum KM20]
gi|390481493|emb|CCF29383.1| Ribosome-recycling factor [Leuconostoc citreum LBAE E16]
Length = 181
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/178 (48%), Positives = 130/178 (73%), Gaps = 3/178 (1%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D K+RM+ D ++ S+RTGR+NP +LD+IEVEYYG+ L +A I+ P++ LLI
Sbjct: 7 DAKSRMQGAQDALQRELTSIRTGRANPHILDRIEVEYYGAMTPLNQVASISVPEARVLLI 66
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
P+DK++L+ I +AI SDLG+ P++DG ++RL +PQ+T E RK+L+K V +AE+ KV+
Sbjct: 67 TPFDKTALEEIIRAINMSDLGLNPSSDGNIVRLMIPQMTEEGRKDLAKQVKAEAEKAKVS 126
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRN+RRDA+ + ++KEK++ ED+V+ +D+QKLTD +K ID I +KEKELL +
Sbjct: 127 VRNVRRDAM---DSVKKEKEMPEDDVRKAENDIQKLTDNNIKAIDDIASEKEKELLTI 181
>gi|19745589|ref|NP_606725.1| ribosome recycling factor [Streptococcus pyogenes MGAS8232]
gi|24418654|sp|Q8P274.1|RRF_STRP8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|19747714|gb|AAL97224.1| putative ribosome recycling factor [Streptococcus pyogenes
MGAS8232]
Length = 185
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/160 (52%), Positives = 119/160 (74%)
Query: 115 FNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIV 174
+ S+R GR+N ++LD+I+V+YYG+P L +A I P++ LLI P+DKSS+K IE+A+
Sbjct: 24 YASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERALN 83
Query: 175 SSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQ 234
+SDLG+TP NDG VIRL +P LT E RKEL+K V K E K+A+RNIRRDA+ +K +
Sbjct: 84 ASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDDAKKQE 143
Query: 235 KEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
K K+++ED +K L D+QK TD+ +K+ID + +KEKELL
Sbjct: 144 KAKEITEDELKTLEKDIQKATDDAIKEIDRMTAEKEKELL 183
>gi|333381307|ref|ZP_08472989.1| ribosome-recycling factor [Dysgonomonas gadei ATCC BAA-286]
gi|332830277|gb|EGK02905.1| ribosome-recycling factor [Dysgonomonas gadei ATCC BAA-286]
Length = 187
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 136/186 (73%), Gaps = 1/186 (0%)
Query: 91 AEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINT 150
A+ I + + +M+ +++ + + +R G++NP +LD I++EYYGS L +A INT
Sbjct: 3 ADLKQIGQKAEEKMQASVEFLDETLSRIRAGKANPHILDGIKLEYYGSLTPLSGVAAINT 62
Query: 151 PDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 210
PD+ +++IQP++K LK +EKAI++SD+G+TP+N+GE+IRL++P LT ERRK+L K +
Sbjct: 63 PDARTIVIQPWEKQMLKEVEKAILNSDVGITPDNNGEIIRLSIPPLTEERRKQLVKQAKQ 122
Query: 211 QAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKE 270
+AE+ KV++RN RRDA+ + +K K+ ++ED KD +D+QKL D+Y+KKID ++ KE
Sbjct: 123 EAEDAKVSIRNARRDAIDSIKKSVKD-GVAEDMAKDAENDMQKLHDKYIKKIDDVFALKE 181
Query: 271 KELLKV 276
KE+L V
Sbjct: 182 KEILTV 187
>gi|418028887|ref|ZP_12667436.1| hypothetical protein LDBUL1632_00230 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
gi|354691224|gb|EHE91162.1| hypothetical protein LDBUL1632_00230 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
Length = 185
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 127/175 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K M ++I++ ++N +VR G +N ++LD++ VEYYG P L +A I P+ L+I P
Sbjct: 10 KRNMNKSIEVYQSNLATVRAGVANASLLDRVMVEYYGVPTPLVQMAGITIPEPRVLMITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+SL IE AI++SDLG+TP NDG VIRL +PQLT ERR+E++K V K AEE K+AVR
Sbjct: 70 YDKTSLNDIEHAILASDLGLTPANDGNVIRLIIPQLTGERRQEIAKEVGKLAEEAKIAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
N+R++A+KA +K +K+ +++ED + L ++QK+TDE KKID + K KE+++
Sbjct: 130 NVRQEAMKALKKQEKDGEITEDEERRLEKEVQKVTDESTKKIDQMADNKRKEIIQ 184
>gi|54297625|ref|YP_123994.1| ribosome recycling factor [Legionella pneumophila str. Paris]
gi|60390234|sp|Q5X4K0.1|RRF_LEGPA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|53751410|emb|CAH12828.1| Ribosome recycling factor [Legionella pneumophila str. Paris]
Length = 185
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/181 (45%), Positives = 133/181 (73%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I++D + RM++TI+ + ++ + +RTGR+N ++LD + V+YYGSP L +A I T DS +
Sbjct: 5 IKQDSEKRMKKTIEALHSDMSKIRTGRANASLLDHVMVDYYGSPTPLSQVANITTSDSRT 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
+L+ P++KS + +IEKAI++SDLG+ P G IR+ +P LT ERRKEL KVV + E+G
Sbjct: 65 ILVTPWEKSMVAAIEKAILNSDLGLNPATAGTAIRVPMPPLTEERRKELIKVVRHEGEQG 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
+V++RNIRRDA ++L KEK +SED+ + + +QKLTD Y+ ++D++ +KEK+L++
Sbjct: 125 RVSIRNIRRDANNQLKELVKEKAISEDDERRAAEAIQKLTDRYISEVDAVLAEKEKDLME 184
Query: 276 V 276
+
Sbjct: 185 I 185
>gi|340751246|ref|ZP_08688068.1| ribosome-recycling factor [Fusobacterium mortiferum ATCC 9817]
gi|229421765|gb|EEO36812.1| ribosome-recycling factor [Fusobacterium mortiferum ATCC 9817]
Length = 188
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/178 (47%), Positives = 131/178 (73%), Gaps = 2/178 (1%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +M + ++ + F S+R GR+N +MLD I+VE YGS + L + ++ P++ L+I P
Sbjct: 11 KEKMGKAVEATKHKFTSIRAGRANVSMLDGIKVEQYGSEMPLNQVGSVSAPEARLLVIDP 70
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
+DKS + IEKAI++++LG+TPNNDG+VIRL +P+LT++RRKE K+ +AE GKVAVR
Sbjct: 71 WDKSLIGKIEKAIIAANLGLTPNNDGKVIRLIMPELTADRRKEYVKMAKSEAENGKVAVR 130
Query: 221 NIRRDALKAYEKLQKEKK--LSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIR+D +KL K+K+ +SED VK+L +++QKLTD ++K+ID ++ +KEKE+ V
Sbjct: 131 NIRKDGNNDLKKLLKDKENPVSEDEVKNLEAEIQKLTDAHIKEIDELFAKKEKEITTV 188
>gi|392330815|ref|ZP_10275430.1| ribosome recycling factor [Streptococcus canis FSL Z3-227]
gi|391418494|gb|EIQ81306.1| ribosome recycling factor [Streptococcus canis FSL Z3-227]
Length = 185
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/162 (51%), Positives = 120/162 (74%)
Query: 115 FNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIV 174
+ S+R GR+N ++LD+I+V+YYG+P L +A I P++ LLI P+DKSS+K IE+A+
Sbjct: 24 YASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERALN 83
Query: 175 SSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQ 234
+SDLG+TP NDG VIRL +P LT E RKEL+K V K E K+++RNIRRDA+ +K +
Sbjct: 84 ASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKISIRNIRRDAMDDAKKQE 143
Query: 235 KEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
K K+++ED +K L D+QK TD+ +K+ID + +KEKELL V
Sbjct: 144 KAKEITEDELKTLEKDIQKATDDAVKEIDRMTAEKEKELLSV 185
>gi|320450765|ref|YP_004202861.1| ribosome recycling factor [Thermus scotoductus SA-01]
gi|320150934|gb|ADW22312.1| ribosome recycling factor [Thermus scotoductus SA-01]
Length = 185
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 128/176 (72%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ +A M+++++ + N +RTGR+NPA+L ++VEYYG+ V L IA + PD+ +L++
Sbjct: 9 ETRAHMQKSLEALEHNLAGLRTGRANPALLLHLKVEYYGTHVPLNQIATVTAPDAKTLVV 68
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
Q +D+++LK+IEKAI SDLG+ P N G+ + + +P LT ERRKEL K AEEG++A
Sbjct: 69 QSWDQNALKAIEKAIRDSDLGLNPANKGDALYINIPPLTEERRKELVKTARHYAEEGRIA 128
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
+RNIRR+AL+ +KL KE LSED+ K +++QK+TDE++ K D + ++KE+E+L
Sbjct: 129 IRNIRREALEKLKKLSKELHLSEDDTKRAEAEIQKITDEFIAKADELLEKKEQEIL 184
>gi|404496113|ref|YP_006720219.1| ribosome recycling factor [Geobacter metallireducens GS-15]
gi|418065464|ref|ZP_12702837.1| ribosome recycling factor [Geobacter metallireducens RCH3]
gi|123572206|sp|Q39W85.1|RRF_GEOMG RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|78193722|gb|ABB31489.1| ribosome recycling factor [Geobacter metallireducens GS-15]
gi|373562204|gb|EHP88421.1| ribosome recycling factor [Geobacter metallireducens RCH3]
Length = 185
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/178 (46%), Positives = 130/178 (73%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D+KA ME+++D +R + VRTGR+ +LD I+VEYYG+P L +A ++ P+ ++ I
Sbjct: 8 DMKAHMEKSVDALRREYQKVRTGRATTGLLDDIKVEYYGNPSPLSQVATLSVPEPRTITI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP++ + IEKAI++++LG TP NDG+ IR++LP LT ERRKE+ K + K AE+ KVA
Sbjct: 68 QPWEAKLIPVIEKAIMNANLGFTPANDGKTIRISLPPLTEERRKEIVKTLKKMAEDTKVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRNIRRD + + +KL+K+KK+SED++K ++Q +T+ ++ K++ + KEKE+L+V
Sbjct: 128 VRNIRRDGIDSLKKLEKDKKISEDDLKRAEKEVQDVTNTFVAKVEEVLTHKEKEVLEV 185
>gi|335996664|ref|ZP_08562581.1| ribosome recycling factor, RRF [Lactobacillus ruminis SPM0211]
gi|347525328|ref|YP_004832076.1| ribosome recycling factor, RRF [Lactobacillus ruminis ATCC 27782]
gi|417974159|ref|ZP_12614982.1| ribosome recycling factor [Lactobacillus ruminis ATCC 25644]
gi|335351734|gb|EGM53225.1| ribosome recycling factor, RRF [Lactobacillus ruminis SPM0211]
gi|345284287|gb|AEN78140.1| ribosome recycling factor, RRF [Lactobacillus ruminis ATCC 27782]
gi|346329486|gb|EGX97782.1| ribosome recycling factor [Lactobacillus ruminis ATCC 25644]
Length = 186
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/172 (48%), Positives = 121/172 (70%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++ ++ +R G +N ++L+++ VEYYG+P L +AQI+ P++ LL+ PYD
Sbjct: 13 KMQKAEAALQHELGGIRAGVANASLLNRVMVEYYGAPTPLNQMAQISVPEARVLLVTPYD 72
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KSSLK +E A+++SDLG+TP NDG IRL +PQLT ERRKEL+K V AE+GKVAVRN+
Sbjct: 73 KSSLKDVEHALLASDLGLTPMNDGSAIRLVIPQLTEERRKELAKQVRAAAEKGKVAVRNV 132
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
RR+ + + +K QK +SED + DL + QK+TD +K ID I KEKE+L
Sbjct: 133 RREMMDSLKKAQKNGDMSEDVLHDLEDEAQKITDASIKNIDGITAAKEKEIL 184
>gi|410594908|ref|YP_006951635.1| ribosome-recycling factor [Streptococcus agalactiae SA20-06]
gi|421532339|ref|ZP_15978703.1| ribosome recycling factor [Streptococcus agalactiae STIR-CD-17]
gi|403642415|gb|EJZ03261.1| ribosome recycling factor [Streptococcus agalactiae STIR-CD-17]
gi|410518547|gb|AFV72691.1| Ribosome-recycling factor [Streptococcus agalactiae SA20-06]
Length = 185
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 122/174 (70%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
R E++ + F +R GR+N ++LD+I+VEYYG+P L +A I P++ LLI P+D
Sbjct: 12 RFEQSHQSLSREFAVIRAGRANASLLDRIQVEYYGAPTPLNQLASITVPEARVLLISPFD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KSS+K IE+AI SDLG+ P NDG VIRL +P LT E R++L+K V K E K+A+RNI
Sbjct: 72 KSSIKDIERAINESDLGINPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKIAIRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA+ +K +K K+++ED++K L D+QK TD+ +K ID + KEKELL+V
Sbjct: 132 RRDAMDEAKKQEKNKEITEDDLKSLEKDIQKATDDAVKHIDEMTANKEKELLEV 185
>gi|262283030|ref|ZP_06060797.1| ribosome-recycling factor [Streptococcus sp. 2_1_36FAA]
gi|262261282|gb|EEY79981.1| ribosome-recycling factor [Streptococcus sp. 2_1_36FAA]
Length = 185
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/183 (48%), Positives = 126/183 (68%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K RM + + F +VR GR+N ++LD+I VEYYG L IA I P++
Sbjct: 3 NAIVEKAKERMSHSHQSLAREFGAVRAGRANASLLDRISVEYYGVETPLNQIASITIPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+ P+DKSSLK IE+AI +SDLG+TP +DG VIRL +P LT E R++L+K V K E
Sbjct: 63 RVLLVTPFDKSSLKDIERAINASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKIGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
K+A+RNIRRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKEL
Sbjct: 123 NAKIAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDEMTAHKEKEL 182
Query: 274 LKV 276
L+V
Sbjct: 183 LEV 185
>gi|386360622|ref|YP_006058867.1| ribosome recycling factor [Thermus thermophilus JL-18]
gi|383509649|gb|AFH39081.1| ribosome recycling factor [Thermus thermophilus JL-18]
Length = 185
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/190 (44%), Positives = 136/190 (71%), Gaps = 7/190 (3%)
Query: 85 TIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKS 144
T++E+ AE ++ M++++D++ N +RTGR+NPA+L ++VEYYG+ V L
Sbjct: 2 TLKELYAE-------TRSHMQKSLDVLEHNLAGLRTGRANPALLLHLKVEYYGTHVPLNQ 54
Query: 145 IAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKEL 204
IA + PD+ +L++Q +D+++LK+IEKAI SDLG+ P+N G+ + + +P LT ERRK+L
Sbjct: 55 IATVTAPDARTLVVQSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDL 114
Query: 205 SKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 264
+ V + AEEG+VA+RNIRR+AL +KL KE LSED K +++QK+TDE++ K D
Sbjct: 115 VRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQ 174
Query: 265 IYKQKEKELL 274
+ ++KE+E+L
Sbjct: 175 LAEKKEQEIL 184
>gi|329767058|ref|ZP_08258586.1| ribosome-recycling factor [Gemella haemolysans M341]
gi|328837783|gb|EGF87408.1| ribosome-recycling factor [Gemella haemolysans M341]
Length = 185
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/181 (45%), Positives = 129/181 (71%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I ++ RME+ I +R S+R G+++ A+LD++ V+YYG P + +A ++ P+
Sbjct: 5 IMNNLNERMEKAIASLRRELASIRAGKASAAVLDRLTVDYYGVPTPINQVAGVSVPEPKM 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L+I PY+K+ L IEK I +SDLG+ P NDG VIR+ P LT ERRKEL+K+V K++E
Sbjct: 65 LVISPYEKTLLGDIEKVIQASDLGLNPANDGTVIRIVFPALTEERRKELAKLVGKESEGA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVAVRN+RRDA+ + +KL+K +++ED++K S D+QK+TD+++ +ID + K+K+ EL+
Sbjct: 125 KVAVRNVRRDAMDSMKKLEKSSQITEDDLKGYSDDIQKVTDKFIAEIDKVTKEKQDELMS 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|153812431|ref|ZP_01965099.1| hypothetical protein RUMOBE_02830 [Ruminococcus obeum ATCC 29174]
gi|149831593|gb|EDM86680.1| ribosome recycling factor [Ruminococcus obeum ATCC 29174]
Length = 183
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/174 (52%), Positives = 128/174 (73%), Gaps = 1/174 (0%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +T+D ++R GR+NP +LDKI V+YYGSP L+ +A I P++ + IQP++
Sbjct: 11 KMTKTLDGFEAELTTIRAGRANPHILDKITVDYYGSPTPLQQVANITVPEARMIQIQPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
S +K IEKAI++SDLG+ P+NDG+++RL LP+LT ERRK+L K V K+ E KVAVRNI
Sbjct: 71 SSLIKGIEKAILTSDLGLNPSNDGKIVRLVLPELTEERRKDLVKDVKKKGEAAKVAVRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA A++KL K+ +SED VKDL +QKLTD+++KKID+ + K KE+L V
Sbjct: 131 RRDANDAFKKLTKQ-DVSEDEVKDLEDAVQKLTDKFIKKIDAAVEVKSKEILTV 183
>gi|50842996|ref|YP_056223.1| ribosome recycling factor [Propionibacterium acnes KPA171202]
gi|289426460|ref|ZP_06428203.1| ribosome recycling factor [Propionibacterium acnes SK187]
gi|289428643|ref|ZP_06430326.1| ribosome recycling factor [Propionibacterium acnes J165]
gi|295131067|ref|YP_003581730.1| ribosome recycling factor [Propionibacterium acnes SK137]
gi|335054668|ref|ZP_08547471.1| ribosome recycling factor [Propionibacterium sp. 434-HC2]
gi|354607714|ref|ZP_09025682.1| ribosome recycling factor [Propionibacterium sp. 5_U_42AFAA]
gi|365963215|ref|YP_004944781.1| ribosome recycling factor [Propionibacterium acnes TypeIA2 P.acn31]
gi|365965458|ref|YP_004947023.1| ribosome recycling factor [Propionibacterium acnes TypeIA2 P.acn17]
gi|365974393|ref|YP_004955952.1| ribosome recycling factor [Propionibacterium acnes TypeIA2 P.acn33]
gi|386024488|ref|YP_005942793.1| ribosome-recycling factor [Propionibacterium acnes 266]
gi|387503897|ref|YP_005945126.1| ribosome recycling factor [Propionibacterium acnes 6609]
gi|407935940|ref|YP_006851582.1| ribosome recycling factor [Propionibacterium acnes C1]
gi|417930300|ref|ZP_12573679.1| ribosome recycling factor [Propionibacterium acnes SK182]
gi|422385528|ref|ZP_16465660.1| ribosome recycling factor [Propionibacterium acnes HL096PA3]
gi|422387825|ref|ZP_16467936.1| ribosome recycling factor [Propionibacterium acnes HL096PA2]
gi|422393747|ref|ZP_16473797.1| ribosome recycling factor [Propionibacterium acnes HL099PA1]
gi|422425516|ref|ZP_16502450.1| ribosome recycling factor [Propionibacterium acnes HL043PA1]
gi|422427475|ref|ZP_16504391.1| ribosome recycling factor [Propionibacterium acnes HL087PA1]
gi|422430569|ref|ZP_16507449.1| ribosome recycling factor [Propionibacterium acnes HL072PA2]
gi|422432558|ref|ZP_16509427.1| ribosome recycling factor [Propionibacterium acnes HL059PA2]
gi|422434277|ref|ZP_16511137.1| ribosome recycling factor [Propionibacterium acnes HL083PA2]
gi|422438724|ref|ZP_16515562.1| ribosome recycling factor [Propionibacterium acnes HL092PA1]
gi|422444232|ref|ZP_16521027.1| ribosome recycling factor [Propionibacterium acnes HL002PA1]
gi|422447068|ref|ZP_16523806.1| ribosome recycling factor [Propionibacterium acnes HL027PA1]
gi|422449600|ref|ZP_16526324.1| ribosome recycling factor [Propionibacterium acnes HL036PA3]
gi|422451312|ref|ZP_16528015.1| ribosome recycling factor [Propionibacterium acnes HL030PA2]
gi|422453467|ref|ZP_16530163.1| ribosome recycling factor [Propionibacterium acnes HL087PA3]
gi|422456143|ref|ZP_16532811.1| ribosome recycling factor [Propionibacterium acnes HL030PA1]
gi|422462607|ref|ZP_16539229.1| ribosome recycling factor [Propionibacterium acnes HL038PA1]
gi|422473553|ref|ZP_16550027.1| ribosome recycling factor [Propionibacterium acnes HL056PA1]
gi|422477255|ref|ZP_16553688.1| ribosome recycling factor [Propionibacterium acnes HL007PA1]
gi|422480030|ref|ZP_16556434.1| ribosome recycling factor [Propionibacterium acnes HL063PA1]
gi|422481307|ref|ZP_16557707.1| ribosome recycling factor [Propionibacterium acnes HL036PA1]
gi|422486072|ref|ZP_16562429.1| ribosome recycling factor [Propionibacterium acnes HL043PA2]
gi|422487379|ref|ZP_16563711.1| ribosome recycling factor [Propionibacterium acnes HL013PA2]
gi|422491346|ref|ZP_16567660.1| ribosome recycling factor [Propionibacterium acnes HL020PA1]
gi|422491994|ref|ZP_16568304.1| ribosome recycling factor [Propionibacterium acnes HL086PA1]
gi|422497029|ref|ZP_16573306.1| ribosome recycling factor [Propionibacterium acnes HL002PA3]
gi|422499463|ref|ZP_16575727.1| ribosome recycling factor [Propionibacterium acnes HL063PA2]
gi|422503228|ref|ZP_16579469.1| ribosome recycling factor [Propionibacterium acnes HL027PA2]
gi|422505496|ref|ZP_16581726.1| ribosome recycling factor [Propionibacterium acnes HL036PA2]
gi|422507000|ref|ZP_16583218.1| ribosome recycling factor [Propionibacterium acnes HL046PA2]
gi|422509928|ref|ZP_16586079.1| ribosome recycling factor [Propionibacterium acnes HL059PA1]
gi|422512913|ref|ZP_16589040.1| ribosome recycling factor [Propionibacterium acnes HL087PA2]
gi|422516776|ref|ZP_16592884.1| ribosome recycling factor [Propionibacterium acnes HL110PA2]
gi|422517277|ref|ZP_16593377.1| ribosome recycling factor [Propionibacterium acnes HL074PA1]
gi|422521254|ref|ZP_16597286.1| ribosome recycling factor [Propionibacterium acnes HL045PA1]
gi|422522727|ref|ZP_16598748.1| ribosome recycling factor [Propionibacterium acnes HL053PA2]
gi|422525673|ref|ZP_16601674.1| ribosome recycling factor [Propionibacterium acnes HL083PA1]
gi|422528887|ref|ZP_16604862.1| ribosome recycling factor [Propionibacterium acnes HL053PA1]
gi|422530499|ref|ZP_16606458.1| ribosome recycling factor [Propionibacterium acnes HL110PA1]
gi|422533676|ref|ZP_16609607.1| ribosome recycling factor [Propionibacterium acnes HL072PA1]
gi|422536681|ref|ZP_16612584.1| ribosome recycling factor [Propionibacterium acnes HL078PA1]
gi|422540241|ref|ZP_16616110.1| ribosome recycling factor [Propionibacterium acnes HL013PA1]
gi|422542237|ref|ZP_16618089.1| ribosome recycling factor [Propionibacterium acnes HL037PA1]
gi|422544523|ref|ZP_16620361.1| ribosome recycling factor [Propionibacterium acnes HL082PA1]
gi|422547132|ref|ZP_16622954.1| ribosome recycling factor [Propionibacterium acnes HL050PA3]
gi|422548605|ref|ZP_16624417.1| ribosome recycling factor [Propionibacterium acnes HL050PA1]
gi|422551203|ref|ZP_16626998.1| ribosome recycling factor [Propionibacterium acnes HL005PA3]
gi|422555562|ref|ZP_16631330.1| ribosome recycling factor [Propionibacterium acnes HL005PA2]
gi|422557137|ref|ZP_16632882.1| ribosome recycling factor [Propionibacterium acnes HL025PA2]
gi|422560377|ref|ZP_16636067.1| ribosome recycling factor [Propionibacterium acnes HL005PA1]
gi|422563928|ref|ZP_16639600.1| ribosome recycling factor [Propionibacterium acnes HL046PA1]
gi|422566842|ref|ZP_16642470.1| ribosome recycling factor [Propionibacterium acnes HL002PA2]
gi|422571181|ref|ZP_16646774.1| ribosome recycling factor [Propionibacterium acnes HL067PA1]
gi|422579425|ref|ZP_16654947.1| ribosome recycling factor [Propionibacterium acnes HL005PA4]
gi|60390690|sp|Q6A7K0.1|RRF_PROAC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|50840598|gb|AAT83265.1| ribosome recycling factor [Propionibacterium acnes KPA171202]
gi|289153188|gb|EFD01906.1| ribosome recycling factor [Propionibacterium acnes SK187]
gi|289158041|gb|EFD06261.1| ribosome recycling factor [Propionibacterium acnes J165]
gi|291377325|gb|ADE01180.1| ribosome recycling factor [Propionibacterium acnes SK137]
gi|313763566|gb|EFS34930.1| ribosome recycling factor [Propionibacterium acnes HL013PA1]
gi|313773505|gb|EFS39471.1| ribosome recycling factor [Propionibacterium acnes HL074PA1]
gi|313793959|gb|EFS41983.1| ribosome recycling factor [Propionibacterium acnes HL110PA1]
gi|313801346|gb|EFS42597.1| ribosome recycling factor [Propionibacterium acnes HL110PA2]
gi|313807974|gb|EFS46455.1| ribosome recycling factor [Propionibacterium acnes HL087PA2]
gi|313811557|gb|EFS49271.1| ribosome recycling factor [Propionibacterium acnes HL083PA1]
gi|313816746|gb|EFS54460.1| ribosome recycling factor [Propionibacterium acnes HL059PA1]
gi|313819543|gb|EFS57257.1| ribosome recycling factor [Propionibacterium acnes HL046PA2]
gi|313822134|gb|EFS59848.1| ribosome recycling factor [Propionibacterium acnes HL036PA1]
gi|313823632|gb|EFS61346.1| ribosome recycling factor [Propionibacterium acnes HL036PA2]
gi|313825956|gb|EFS63670.1| ribosome recycling factor [Propionibacterium acnes HL063PA1]
gi|313829423|gb|EFS67137.1| ribosome recycling factor [Propionibacterium acnes HL063PA2]
gi|313831297|gb|EFS69011.1| ribosome recycling factor [Propionibacterium acnes HL007PA1]
gi|313834908|gb|EFS72622.1| ribosome recycling factor [Propionibacterium acnes HL056PA1]
gi|313839933|gb|EFS77647.1| ribosome recycling factor [Propionibacterium acnes HL086PA1]
gi|314914720|gb|EFS78551.1| ribosome recycling factor [Propionibacterium acnes HL005PA4]
gi|314919318|gb|EFS83149.1| ribosome recycling factor [Propionibacterium acnes HL050PA1]
gi|314920772|gb|EFS84603.1| ribosome recycling factor [Propionibacterium acnes HL050PA3]
gi|314924719|gb|EFS88550.1| ribosome recycling factor [Propionibacterium acnes HL036PA3]
gi|314930451|gb|EFS94282.1| ribosome recycling factor [Propionibacterium acnes HL067PA1]
gi|314954392|gb|EFS98798.1| ribosome recycling factor [Propionibacterium acnes HL027PA1]
gi|314957475|gb|EFT01578.1| ribosome recycling factor [Propionibacterium acnes HL002PA1]
gi|314962110|gb|EFT06211.1| ribosome recycling factor [Propionibacterium acnes HL002PA2]
gi|314963689|gb|EFT07789.1| ribosome recycling factor [Propionibacterium acnes HL082PA1]
gi|314968483|gb|EFT12581.1| ribosome recycling factor [Propionibacterium acnes HL037PA1]
gi|314974173|gb|EFT18269.1| ribosome recycling factor [Propionibacterium acnes HL053PA1]
gi|314976537|gb|EFT20632.1| ribosome recycling factor [Propionibacterium acnes HL045PA1]
gi|314978900|gb|EFT22994.1| ribosome recycling factor [Propionibacterium acnes HL072PA2]
gi|314984356|gb|EFT28448.1| ribosome recycling factor [Propionibacterium acnes HL005PA1]
gi|314986546|gb|EFT30638.1| ribosome recycling factor [Propionibacterium acnes HL005PA2]
gi|314990905|gb|EFT34996.1| ribosome recycling factor [Propionibacterium acnes HL005PA3]
gi|315079539|gb|EFT51532.1| ribosome recycling factor [Propionibacterium acnes HL053PA2]
gi|315081233|gb|EFT53209.1| ribosome recycling factor [Propionibacterium acnes HL078PA1]
gi|315083599|gb|EFT55575.1| ribosome recycling factor [Propionibacterium acnes HL027PA2]
gi|315087116|gb|EFT59092.1| ribosome recycling factor [Propionibacterium acnes HL002PA3]
gi|315089289|gb|EFT61265.1| ribosome recycling factor [Propionibacterium acnes HL072PA1]
gi|315095312|gb|EFT67288.1| ribosome recycling factor [Propionibacterium acnes HL038PA1]
gi|315099193|gb|EFT71169.1| ribosome recycling factor [Propionibacterium acnes HL059PA2]
gi|315100324|gb|EFT72300.1| ribosome recycling factor [Propionibacterium acnes HL046PA1]
gi|315106750|gb|EFT78726.1| ribosome recycling factor [Propionibacterium acnes HL030PA1]
gi|315108992|gb|EFT80968.1| ribosome recycling factor [Propionibacterium acnes HL030PA2]
gi|327328425|gb|EGE70187.1| ribosome recycling factor [Propionibacterium acnes HL096PA2]
gi|327329709|gb|EGE71465.1| ribosome recycling factor [Propionibacterium acnes HL096PA3]
gi|327444212|gb|EGE90866.1| ribosome recycling factor [Propionibacterium acnes HL043PA2]
gi|327444909|gb|EGE91563.1| ribosome recycling factor [Propionibacterium acnes HL043PA1]
gi|327446394|gb|EGE93048.1| ribosome recycling factor [Propionibacterium acnes HL013PA2]
gi|327452018|gb|EGE98672.1| ribosome recycling factor [Propionibacterium acnes HL092PA1]
gi|327454945|gb|EGF01600.1| ribosome recycling factor [Propionibacterium acnes HL087PA3]
gi|327457769|gb|EGF04424.1| ribosome recycling factor [Propionibacterium acnes HL083PA2]
gi|328752149|gb|EGF65765.1| ribosome recycling factor [Propionibacterium acnes HL020PA1]
gi|328755222|gb|EGF68838.1| ribosome recycling factor [Propionibacterium acnes HL087PA1]
gi|328758299|gb|EGF71915.1| ribosome recycling factor [Propionibacterium acnes HL025PA2]
gi|328760030|gb|EGF73611.1| ribosome recycling factor [Propionibacterium acnes HL099PA1]
gi|332675946|gb|AEE72762.1| ribosome-recycling factor [Propionibacterium acnes 266]
gi|333763843|gb|EGL41265.1| ribosome recycling factor [Propionibacterium sp. 434-HC2]
gi|335277942|gb|AEH29847.1| ribosome recycling factor [Propionibacterium acnes 6609]
gi|340772427|gb|EGR94931.1| ribosome recycling factor [Propionibacterium acnes SK182]
gi|353556260|gb|EHC25631.1| ribosome recycling factor [Propionibacterium sp. 5_U_42AFAA]
gi|365739896|gb|AEW84098.1| ribosome recycling factor [Propionibacterium acnes TypeIA2 P.acn31]
gi|365742139|gb|AEW81833.1| ribosome recycling factor [Propionibacterium acnes TypeIA2 P.acn17]
gi|365744392|gb|AEW79589.1| ribosome recycling factor [Propionibacterium acnes TypeIA2 P.acn33]
gi|407904521|gb|AFU41351.1| ribosome recycling factor [Propionibacterium acnes C1]
gi|456738652|gb|EMF63219.1| ribosome recycling factor [Propionibacterium acnes FZ1/2/0]
Length = 184
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/183 (45%), Positives = 127/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S I KD + +M +D R F ++RTGR+NPAM +K+ VEYYG+P L+ +A P++
Sbjct: 2 SDIIKDAEKKMGSAVDHAREEFAAIRTGRANPAMFNKLMVEYYGTPTPLQQLASFQVPEA 61
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
++LI P+DKS + +EKAI SDLG+ P+NDG V+R LP LT ERRKE K+ +AE
Sbjct: 62 RTVLIAPFDKSCVNDVEKAIRDSDLGVNPSNDGNVVRCVLPALTEERRKEYIKMAKTKAE 121
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
EG++AVRN+RR + +K +K+K++SED + L +L ++T +Y+++ID + K KE EL
Sbjct: 122 EGRIAVRNVRRASNDVVKKQEKDKEISEDEMTRLEKELDQVTRKYVEQIDELLKSKESEL 181
Query: 274 LKV 276
L++
Sbjct: 182 LEI 184
>gi|339009412|ref|ZP_08641984.1| ribosome-recycling factor [Brevibacillus laterosporus LMG 15441]
gi|338773890|gb|EGP33421.1| ribosome-recycling factor [Brevibacillus laterosporus LMG 15441]
Length = 185
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 127/182 (69%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
+I KD++ RM + I ++ + ++R GR+ PAMLDKI V+YYG+P + +A + P+
Sbjct: 4 NILKDMEDRMSKAIQTLKKDLATLRAGRATPAMLDKIMVDYYGTPTPINQLANVVAPEPR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
L +QP+DK++LK I+KAI+ SD+G+TP NDG VIR+ +P LT ERR++L KV K E+
Sbjct: 64 MLQVQPWDKNALKDIDKAIMQSDIGLTPTNDGSVIRIAVPPLTEERRRDLVKVANKNGED 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
KVA+RN+RRDA +KL+K +SED + +QK TD+++ ++D I K KEK++L
Sbjct: 124 AKVAIRNVRRDANDGIKKLEKAASISEDESRGHQETVQKTTDKFIAEVDKIVKDKEKDIL 183
Query: 275 KV 276
+V
Sbjct: 184 EV 185
>gi|77408576|ref|ZP_00785312.1| ribosome recycling factor [Streptococcus agalactiae COH1]
gi|77172850|gb|EAO75983.1| ribosome recycling factor [Streptococcus agalactiae COH1]
Length = 185
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 121/174 (69%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
R E++ + F +R GR+N ++LD+I+VEYYG+P L +A I P++ LLI P+D
Sbjct: 12 RFEQSHQSLSREFAGIRAGRANASLLDRIQVEYYGAPTPLNQLASITVPEARVLLISPFD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KSS+K IE+AI SDLG+ P NDG VIRL +P LT E R++L+K V K E K+A+RNI
Sbjct: 72 KSSIKDIERAINESDLGINPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKIAIRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA+ K +K K+++ED++K L D+QK TD+ +K ID + KEKELL+V
Sbjct: 132 RRDAMDEAXKQEKNKEITEDDLKSLEKDIQKATDDAVKHIDEMTVNKEKELLEV 185
>gi|168184638|ref|ZP_02619302.1| ribosome recycling factor [Clostridium botulinum Bf]
gi|170756757|ref|YP_001781975.1| ribosome recycling factor [Clostridium botulinum B1 str. Okra]
gi|226949785|ref|YP_002804876.1| ribosome recycling factor [Clostridium botulinum A2 str. Kyoto]
gi|237795867|ref|YP_002863419.1| ribosome recycling factor [Clostridium botulinum Ba4 str. 657]
gi|387818654|ref|YP_005679001.1| ribosome recycling factor [Clostridium botulinum H04402 065]
gi|229564223|sp|B1II63.1|RRF_CLOBK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|254809503|sp|C1FSK2.1|RRF_CLOBJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|259494535|sp|C3L0C9.1|RRF_CLOB6 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|169121969|gb|ACA45805.1| ribosome recycling factor [Clostridium botulinum B1 str. Okra]
gi|182672259|gb|EDT84220.1| ribosome recycling factor [Clostridium botulinum Bf]
gi|226841674|gb|ACO84340.1| ribosome recycling factor [Clostridium botulinum A2 str. Kyoto]
gi|229263177|gb|ACQ54210.1| ribosome recycling factor [Clostridium botulinum Ba4 str. 657]
gi|322806698|emb|CBZ04267.1| ribosome recycling factor [Clostridium botulinum H04402 065]
Length = 184
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 124/174 (71%), Gaps = 1/174 (0%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +TI ++ S++ GR+NPAMLD+IE EYYGS L + I+ P++ LLIQP+D
Sbjct: 12 KMGKTIVALKRELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVLLIQPWD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS+L +IEKAI+ SDLG+ P+NDG VIRL +P+LT E RK + K V K EE KVA+R+I
Sbjct: 72 KSALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAKVAIRSI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD + L+K+ +SED++K D+QK TD+Y+K+IDSI KEKE+L +
Sbjct: 132 RRDCNDDVKNLKKD-DVSEDDIKKAEDDIQKKTDKYIKEIDSIISAKEKEILSI 184
>gi|421488725|ref|ZP_15936113.1| ribosome recycling factor [Streptococcus oralis SK304]
gi|400367942|gb|EJP20957.1| ribosome recycling factor [Streptococcus oralis SK304]
Length = 185
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/183 (48%), Positives = 126/183 (68%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K RM ++ + F +R GR+N ++LD+I VEYYG L IA I P++
Sbjct: 3 NAIVEKAKERMTQSHQSLAREFGGIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K E
Sbjct: 63 RVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
KVA+RNIRRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKE+
Sbjct: 123 NAKVAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKEI 182
Query: 274 LKV 276
L+V
Sbjct: 183 LEV 185
>gi|303325662|ref|ZP_07356105.1| ribosome recycling factor [Desulfovibrio sp. 3_1_syn3]
gi|345892231|ref|ZP_08843054.1| ribosome-recycling factor [Desulfovibrio sp. 6_1_46AFAA]
gi|302863578|gb|EFL86509.1| ribosome recycling factor [Desulfovibrio sp. 3_1_syn3]
gi|345047370|gb|EGW51235.1| ribosome-recycling factor [Desulfovibrio sp. 6_1_46AFAA]
Length = 186
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/178 (46%), Positives = 127/178 (71%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + RME+ + + +F +RTGR++ A++D I+ +YYG+P + +A + PDS +L I
Sbjct: 9 DAEDRMEKALAALDRDFAKLRTGRASTALVDGIKADYYGTPTPVSQMASVAVPDSRTLTI 68
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+DK + ++EKAI+ SDLG+TP NDG++IR+ +P LT ERRK+L KV K +EE KVA
Sbjct: 69 QPWDKGGIAAVEKAILKSDLGLTPVNDGKIIRIVIPPLTEERRKDLVKVARKYSEEAKVA 128
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRN+RRDA +KL+K+K+++ED +K D+QKLTD+++ +D KEKE++ +
Sbjct: 129 VRNVRRDANDGLKKLEKDKEITEDELKKAVDDVQKLTDKFVGDVDKKCAGKEKEIMDI 186
>gi|225856606|ref|YP_002738117.1| ribosome recycling factor [Streptococcus pneumoniae P1031]
gi|254809536|sp|C1CK29.1|RRF_STRZP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|225725685|gb|ACO21537.1| ribosome recycling factor [Streptococcus pneumoniae P1031]
Length = 185
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/181 (50%), Positives = 124/181 (68%), Gaps = 1/181 (0%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
IEK K RM ++ + F +R GR+N ++LD+I VEYYG L IA I P++
Sbjct: 6 IEK-AKERMTQSHQSLAREFGGIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LL+ P+DKSSLK IE+A+ +SDLG TP NDG VIRL +P LT E R++L+K V K E
Sbjct: 65 LLVTPFDKSSLKDIERALNASDLGNTPANDGSVIRLVVPALTEETRRDLAKEVKKVGENA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVAVRNIRRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKELL+
Sbjct: 125 KVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|328950711|ref|YP_004368046.1| ribosome-recycling factor [Marinithermus hydrothermalis DSM 14884]
gi|328451035|gb|AEB11936.1| Ribosome-recycling factor [Marinithermus hydrothermalis DSM 14884]
Length = 185
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 129/179 (72%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
+ ++ +A M++T++ N +RTGR+NPA+L ++VEYYGS + L +A ++ PD+ +
Sbjct: 5 VYREARAHMQKTVEAFEANLGGLRTGRANPALLAHLKVEYYGSVMPLNQVASVSAPDART 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L++Q +D+++L +IEKAI SDLG+ PNN G+ + + +P LT ERRKE+++ AEE
Sbjct: 65 LVVQAWDQNALPAIEKAIRESDLGLNPNNRGDALYIQIPPLTEERRKEIARTARGYAEEA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
++AVRN RR+AL +KL+KEK LSED K ++QK+T+E++ KID+I ++KE E+L
Sbjct: 125 RIAVRNARREALDQIKKLEKEKLLSEDEAKRAQDEVQKITNEFIDKIDAILEKKEHEIL 183
>gi|120603155|ref|YP_967555.1| ribosome recycling factor [Desulfovibrio vulgaris DP4]
gi|166230784|sp|A1VFB2.1|RRF_DESVV RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|120563384|gb|ABM29128.1| ribosome recycling factor [Desulfovibrio vulgaris DP4]
Length = 186
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/182 (46%), Positives = 128/182 (70%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
SI D + RME+ I + F+ +RTGR++ +++D I+V+YYG+P + +A + PDS
Sbjct: 5 SILLDAEERMEKAIAALEREFSRLRTGRASASLVDGIKVDYYGTPTPISQVASVAVPDSR 64
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
+ IQP+D+++ IEKAI+ SDLG+ P NDG++IR+ +P LT ERRK+L K+ K AEE
Sbjct: 65 CITIQPWDRNAFSLIEKAILKSDLGLNPVNDGKIIRINIPPLTEERRKDLGKMARKYAEE 124
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
KVAVRN+RRDA + +KL+K K+LSED+++ D+QKLTD ++ K D KEKE++
Sbjct: 125 AKVAVRNVRRDANEQLKKLEKNKELSEDDLRKAQEDVQKLTDRFVAKTDEKAGAKEKEIM 184
Query: 275 KV 276
+
Sbjct: 185 DI 186
>gi|15900824|ref|NP_345428.1| ribosome recycling factor [Streptococcus pneumoniae TIGR4]
gi|111658056|ref|ZP_01408758.1| hypothetical protein SpneT_02000789 [Streptococcus pneumoniae
TIGR4]
gi|182683889|ref|YP_001835636.1| ribosome recycling factor [Streptococcus pneumoniae CGSP14]
gi|303254412|ref|ZP_07340518.1| ribosome recycling factor [Streptococcus pneumoniae BS455]
gi|303259855|ref|ZP_07345830.1| ribosome releasing factor [Streptococcus pneumoniae SP-BS293]
gi|303262269|ref|ZP_07348213.1| ribosome releasing factor [Streptococcus pneumoniae SP14-BS292]
gi|303264691|ref|ZP_07350609.1| ribosome releasing factor [Streptococcus pneumoniae BS397]
gi|303267220|ref|ZP_07353085.1| ribosome releasing factor [Streptococcus pneumoniae BS457]
gi|303269506|ref|ZP_07355271.1| ribosome releasing factor [Streptococcus pneumoniae BS458]
gi|418139293|ref|ZP_12776123.1| ribosome recycling factor [Streptococcus pneumoniae GA13338]
gi|418180400|ref|ZP_12816971.1| ribosome recycling factor [Streptococcus pneumoniae GA41688]
gi|418199980|ref|ZP_12836425.1| ribosome recycling factor [Streptococcus pneumoniae GA47976]
gi|418220997|ref|ZP_12847651.1| ribosome recycling factor [Streptococcus pneumoniae GA47751]
gi|419523242|ref|ZP_14062822.1| ribosome recycling factor [Streptococcus pneumoniae GA13723]
gi|421206392|ref|ZP_15663453.1| ribosome recycling factor [Streptococcus pneumoniae 2090008]
gi|421229587|ref|ZP_15686260.1| ribosome recycling factor [Streptococcus pneumoniae 2061376]
gi|421247205|ref|ZP_15703692.1| ribosome recycling factor [Streptococcus pneumoniae 2082170]
gi|421268147|ref|ZP_15719018.1| ribosome recycling factor [Streptococcus pneumoniae SPAR95]
gi|421291816|ref|ZP_15742554.1| ribosome recycling factor [Streptococcus pneumoniae GA56348]
gi|421296063|ref|ZP_15746775.1| ribosome recycling factor [Streptococcus pneumoniae GA58581]
gi|421311686|ref|ZP_15762293.1| ribosome recycling factor [Streptococcus pneumoniae GA58981]
gi|22001947|sp|Q97R82.1|RRF_STRPN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|238691154|sp|B2IPA0.1|RRF_STRPS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|14972420|gb|AAK75068.1| ribosome recycling factor [Streptococcus pneumoniae TIGR4]
gi|182629223|gb|ACB90171.1| ribosome releasing factor [Streptococcus pneumoniae CGSP14]
gi|302598579|gb|EFL65619.1| ribosome recycling factor [Streptococcus pneumoniae BS455]
gi|302636592|gb|EFL67083.1| ribosome releasing factor [Streptococcus pneumoniae SP14-BS292]
gi|302639060|gb|EFL69520.1| ribosome releasing factor [Streptococcus pneumoniae SP-BS293]
gi|302640942|gb|EFL71324.1| ribosome releasing factor [Streptococcus pneumoniae BS458]
gi|302643229|gb|EFL73511.1| ribosome releasing factor [Streptococcus pneumoniae BS457]
gi|302645778|gb|EFL76007.1| ribosome releasing factor [Streptococcus pneumoniae BS397]
gi|353846012|gb|EHE26050.1| ribosome recycling factor [Streptococcus pneumoniae GA41688]
gi|353865027|gb|EHE44936.1| ribosome recycling factor [Streptococcus pneumoniae GA47976]
gi|353875920|gb|EHE55770.1| ribosome recycling factor [Streptococcus pneumoniae GA47751]
gi|353905536|gb|EHE80959.1| ribosome recycling factor [Streptococcus pneumoniae GA13338]
gi|379557973|gb|EHZ23010.1| ribosome recycling factor [Streptococcus pneumoniae GA13723]
gi|395576306|gb|EJG36862.1| ribosome recycling factor [Streptococcus pneumoniae 2090008]
gi|395596399|gb|EJG56617.1| ribosome recycling factor [Streptococcus pneumoniae 2061376]
gi|395614841|gb|EJG74859.1| ribosome recycling factor [Streptococcus pneumoniae 2082170]
gi|395871063|gb|EJG82174.1| ribosome recycling factor [Streptococcus pneumoniae SPAR95]
gi|395894033|gb|EJH05014.1| ribosome recycling factor [Streptococcus pneumoniae GA56348]
gi|395897276|gb|EJH08240.1| ribosome recycling factor [Streptococcus pneumoniae GA58581]
gi|395912264|gb|EJH23127.1| ribosome recycling factor [Streptococcus pneumoniae GA58981]
Length = 185
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/181 (49%), Positives = 125/181 (69%), Gaps = 1/181 (0%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
IEK K RM ++ + F +R GR+N ++LD++ VEYYG L IA I P++
Sbjct: 6 IEK-AKERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LL+ P+DKSSLK IE+A+ +SD+G+TP NDG VIRL +P LT E R++L+K V K E
Sbjct: 65 LLVTPFDKSSLKDIERALNASDIGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVAVRNIRRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKELL+
Sbjct: 125 KVAVRNIRRDAMDEAKKREKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|317495174|ref|ZP_07953544.1| ribosome recycling protein [Gemella morbillorum M424]
gi|316914596|gb|EFV36072.1| ribosome recycling protein [Gemella morbillorum M424]
Length = 185
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/181 (45%), Positives = 130/181 (71%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I ++ RME+ I +R S+R G+++ A+LD++ V+YYG + +A ++ P+
Sbjct: 5 IMNNLNERMEKAIASLRRELASIRAGKASAAVLDRLTVDYYGVATPINQVAGVSVPEPKM 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L+I PY+K+ L IE+AI +SDLG+ P+NDG VIR+ P LT ERRKEL+K+V K++E
Sbjct: 65 LVISPYEKTLLGDIERAIQASDLGLNPSNDGSVIRIVFPALTEERRKELAKLVGKESEGA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVAVRN+RRDA+ A +KL+K +++ED++K S D+QK+TD+++ +ID + K+K+ EL+
Sbjct: 125 KVAVRNVRRDAIDAMKKLEKASQITEDDLKGYSDDIQKVTDKFVAEIDKVTKEKQDELMS 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|317132574|ref|YP_004091888.1| ribosome recycling factor [Ethanoligenens harbinense YUAN-3]
gi|315470553|gb|ADU27157.1| ribosome recycling factor [Ethanoligenens harbinense YUAN-3]
Length = 183
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/179 (44%), Positives = 130/179 (72%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
+D + +M +T+ + + + ++R GR+NPA+LDK+ V+YYG+P + IA ++ ++ +L
Sbjct: 5 QDYQVKMTKTVAALESEYGTIRAGRANPAILDKVRVDYYGTPTPINQIAAVSVTEARNLT 64
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D + L++IEKAI +SDLG+ P NDG++IR+ P LT ERRKEL K V K E+ KV
Sbjct: 65 IQPWDITQLRAIEKAIYASDLGVNPQNDGKIIRIAFPPLTEERRKELVKTVRKYGEDAKV 124
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+R+IRRDA+++ ++ +K +L+ED++KD +Q TD + K+ID I +KEKE++++
Sbjct: 125 AIRSIRRDAIESLKEQKKGGELTEDDLKDAEKKVQDATDRFCKEIDGIAAKKEKEIMEI 183
>gi|194477329|ref|YP_002049508.1| ribosome releasing factor [Paulinella chromatophora]
gi|171192336|gb|ACB43298.1| ribosome releasing factor [Paulinella chromatophora]
Length = 180
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/178 (48%), Positives = 128/178 (71%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D++ M ++++ + N++RTGR+NP++LDKI V+YYG+ SLKS+A + PDS ++ I
Sbjct: 3 DLETSMNKSVEATQRTLNTIRTGRANPSLLDKITVDYYGAETSLKSMATVFAPDSQTIAI 62
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D S+ IEKAI SDLG+T +NDG++IR+ +P LT +RRK+L K+ AK AEEGKVA
Sbjct: 63 QPFDIKSMGLIEKAIAISDLGLTTSNDGKIIRINIPPLTQDRRKDLCKLAAKYAEEGKVA 122
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RN+RRDA+ +K +K+ LSED +D +Q LTD + +I+ QKE E++KV
Sbjct: 123 LRNLRRDAIDKIKKNEKDGSLSEDQSRDQQKAVQNLTDISISQIEKNLSQKEIEIIKV 180
>gi|421872765|ref|ZP_16304382.1| ribosome recycling factor [Brevibacillus laterosporus GI-9]
gi|372458180|emb|CCF13931.1| ribosome recycling factor [Brevibacillus laterosporus GI-9]
Length = 185
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 127/182 (69%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
+I KD++ RM + I ++ + ++R GR+ PAMLDKI V+YYG+P + +A + P+
Sbjct: 4 NILKDMEDRMSKAIQTLKKDLATLRAGRATPAMLDKIMVDYYGTPTPINQLANVVAPEPR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
L +QP+DK++LK I+KAI+ SD+G+TP NDG VIR+ +P LT ERR++L KV K E+
Sbjct: 64 MLQVQPWDKNALKDIDKAIMQSDIGLTPTNDGSVIRIAVPPLTEERRRDLVKVANKSGED 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
KVA+RN+RRDA +KL+K +SED + +QK TD+++ ++D I K KEK++L
Sbjct: 124 AKVAIRNVRRDANDGIKKLEKAASISEDESRGHQETVQKTTDKFIAEVDKIVKDKEKDIL 183
Query: 275 KV 276
+V
Sbjct: 184 EV 185
>gi|374583996|ref|ZP_09657088.1| ribosome recycling factor [Leptonema illini DSM 21528]
gi|373872857|gb|EHQ04851.1| ribosome recycling factor [Leptonema illini DSM 21528]
Length = 187
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 87/182 (47%), Positives = 131/182 (71%), Gaps = 3/182 (1%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
SI + K+RM+RT++ ++ FN++R+ R+NPAMLD + EYYG+ L +A I+ P++
Sbjct: 9 SIINEAKSRMDRTLENLKREFNTIRSNRANPAMLDGLHAEYYGADTPLNQLATISVPEAR 68
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
LLI P+DKS+ +IEKAI+ SDLG+TP+NDG VIRL LP++T +RR+EL K V ++ EE
Sbjct: 69 ILLISPFDKSASSAIEKAILKSDLGLTPSNDGSVIRLILPEMTMDRRQELVKQVKQRLEE 128
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
KVA+RN+RRD A ++L+K +S+D+ K ++QK+TD + K + I K+KE +L
Sbjct: 129 AKVAIRNVRRD---ANDELKKLTHISKDDQKHFQDEIQKITDAHTHKAEEIAKEKEDSIL 185
Query: 275 KV 276
KV
Sbjct: 186 KV 187
>gi|295114850|emb|CBL35697.1| ribosome recycling factor [butyrate-producing bacterium SM4/1]
Length = 181
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/171 (48%), Positives = 125/171 (73%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M+++ D + F+S+R GR+NP +LDK+ V+YYG+P L+ +A I+ P+ + IQP++
Sbjct: 11 KMDKSYDALLNEFSSIRAGRANPHVLDKLRVDYYGAPTPLQQVANISVPEPRMIQIQPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS +K+IEKAI++SDLG+ P+NDG VIRL P+LT ERRKEL+K + K+ E KVAVRNI
Sbjct: 71 KSLVKAIEKAILTSDLGINPSNDGSVIRLIFPELTEERRKELAKDIKKKGEGAKVAVRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
RRDA ++K++K ++SED++ D +QK+TD+ + KID + K K L
Sbjct: 131 RRDANDTFKKMEKANEISEDDLSDAEEKIQKMTDKMIDKIDKAVETKTKRL 181
>gi|157150295|ref|YP_001450730.1| ribosome recycling factor [Streptococcus gordonii str. Challis
substr. CH1]
gi|189044081|sp|A8AY70.1|RRF_STRGC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|157075089|gb|ABV09772.1| ribosome recycling factor [Streptococcus gordonii str. Challis
substr. CH1]
Length = 185
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 89/183 (48%), Positives = 126/183 (68%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K RM + + F +VR GR+N ++LD+I VEYYG L IA I P++
Sbjct: 3 NAIVEKAKERMSHSHQNLAREFGAVRAGRANASLLDRISVEYYGVETPLNQIASITIPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+ P+DKSSLK IE+AI +SDLG+TP +DG VIRL +P LT E R++L+K V K E
Sbjct: 63 RVLLVTPFDKSSLKDIERAINASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKIGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
K+A+RNIRRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKEL
Sbjct: 123 NAKIAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDEMTAHKEKEL 182
Query: 274 LKV 276
L+V
Sbjct: 183 LEV 185
>gi|257867709|ref|ZP_05647362.1| ribosome recycling factor [Enterococcus casseliflavus EC30]
gi|257874036|ref|ZP_05653689.1| ribosome recycling factor [Enterococcus casseliflavus EC10]
gi|257876615|ref|ZP_05656268.1| ribosome recycling factor [Enterococcus casseliflavus EC20]
gi|325571087|ref|ZP_08146659.1| ribosome recycling factor [Enterococcus casseliflavus ATCC 12755]
gi|420264018|ref|ZP_14766653.1| ribosome recycling factor [Enterococcus sp. C1]
gi|257801792|gb|EEV30695.1| ribosome recycling factor [Enterococcus casseliflavus EC30]
gi|257808200|gb|EEV37022.1| ribosome recycling factor [Enterococcus casseliflavus EC10]
gi|257810781|gb|EEV39601.1| ribosome recycling factor [Enterococcus casseliflavus EC20]
gi|325156172|gb|EGC68358.1| ribosome recycling factor [Enterococcus casseliflavus ATCC 12755]
gi|394768917|gb|EJF48794.1| ribosome recycling factor [Enterococcus sp. C1]
Length = 185
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/178 (46%), Positives = 129/178 (72%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ K +M++ + ++ +R GR+N ++LD++ V YYG P L +A I P++ L+I
Sbjct: 8 EAKDKMKKAAENLQRELGQIRAGRANASILDRVMVTYYGVPTPLNQMASITIPEARILMI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
P+DK+ ++ +EKAI+ SD+G+TP NDG VIRL +PQLT ERRKEL+K V K+AE K+A
Sbjct: 68 TPFDKTMIQEVEKAIMQSDIGITPANDGTVIRLVIPQLTEERRKELAKDVKKEAENAKIA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRNIRRDA++AY+K +K ++ED++++ ++Q TD +K+ID+I +KE+ELL+V
Sbjct: 128 VRNIRRDAMEAYKKQEKAGDITEDDLRESEKEVQTATDNSIKEIDAIAAEKEQELLEV 185
>gi|358066937|ref|ZP_09153423.1| ribosome-recycling factor [Johnsonella ignava ATCC 51276]
gi|356694786|gb|EHI56441.1| ribosome-recycling factor [Johnsonella ignava ATCC 51276]
Length = 184
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 85/179 (47%), Positives = 125/179 (69%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+ + +ME+TI +++ + ++R GR+NP +LDKI+V YYG+P ++ + I+ P++ ++
Sbjct: 6 KEFQEKMEKTISVLQGEYATIRAGRANPHVLDKIKVNYYGTPTPIQQVGNISVPEARVMV 65
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP++K LK IEKA+ SDLG+ P NDG VIRL P+LT ERRKEL K + K+ E KV
Sbjct: 66 IQPWEKGLLKEIEKAVNMSDLGIHPTNDGNVIRLVFPELTEERRKELVKDIKKKGEAAKV 125
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
AVRNIRRDA+ +K +K ++SED + D +QK TD+ +KKID + K KE+L V
Sbjct: 126 AVRNIRRDAIDHMKKSEKAGEISEDALADFEDKIQKATDKSIKKIDENIENKSKEILTV 184
>gi|422758451|ref|ZP_16812213.1| ribosome recycling factor [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
gi|322411286|gb|EFY02194.1| ribosome recycling factor [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 185
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 120/162 (74%)
Query: 115 FNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIV 174
+ S+R GR+N ++LD+I+++YYG+P L +A I P++ LLI P+DKSS+K IE+A+
Sbjct: 24 YASIRAGRANASLLDRIQIDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERALN 83
Query: 175 SSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQ 234
+SDLG+TP NDG VIRL +P LT E RKEL+K V K E K+++RNIRRDA+ +K +
Sbjct: 84 ASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKISIRNIRRDAMDDAKKQE 143
Query: 235 KEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
K K+++ED +K L D+QK TD+ +K+ID + +KEKELL V
Sbjct: 144 KAKEITEDELKTLEKDIQKATDDAIKEIDRMTAEKEKELLSV 185
>gi|153940196|ref|YP_001391730.1| ribosome recycling factor [Clostridium botulinum F str. Langeland]
gi|384462739|ref|YP_005675334.1| ribosome recycling factor [Clostridium botulinum F str. 230613]
gi|166230780|sp|A7GG20.1|RRF_CLOBL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|152936092|gb|ABS41590.1| ribosome recycling factor [Clostridium botulinum F str. Langeland]
gi|295319756|gb|ADG00134.1| ribosome recycling factor [Clostridium botulinum F str. 230613]
Length = 184
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 124/174 (71%), Gaps = 1/174 (0%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +TI ++ S++ GR+NPAMLD+IE EYYGS L + I+ P++ LLIQP+D
Sbjct: 12 KMGKTIVALKRELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISIPEARVLLIQPWD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS+L +IEKAI+ SDLG+ P+NDG VIRL +P+LT E RK + K V K EE KVA+R+I
Sbjct: 72 KSALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAKVAIRSI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD + L+K+ +SED++K D+QK TD+Y+K+IDSI KEKE+L +
Sbjct: 132 RRDCNDDVKNLKKD-DVSEDDIKKAEDDIQKKTDKYIKEIDSIISAKEKEILSI 184
>gi|46579283|ref|YP_010091.1| ribosome recycling factor [Desulfovibrio vulgaris str.
Hildenborough]
gi|387152667|ref|YP_005701603.1| ribosome recycling factor [Desulfovibrio vulgaris RCH1]
gi|60390259|sp|Q72DQ9.1|RRF_DESVH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|46448697|gb|AAS95350.1| ribosome recycling factor [Desulfovibrio vulgaris str.
Hildenborough]
gi|311233111|gb|ADP85965.1| ribosome recycling factor [Desulfovibrio vulgaris RCH1]
Length = 186
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 85/182 (46%), Positives = 128/182 (70%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
SI D + RME+ I + F+ +RTGR++ +++D I+V+YYG+P + +A + PDS
Sbjct: 5 SILLDAEERMEKAIAALEREFSRLRTGRASASLVDGIKVDYYGTPTPISQVASVAVPDSR 64
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
+ IQP+D+++ IEKAI+ SDLG+ P NDG++IR+ +P LT ERRK+L K+ K AEE
Sbjct: 65 CITIQPWDRNAFSLIEKAILKSDLGLNPVNDGKIIRINIPPLTEERRKDLGKMARKYAEE 124
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
KVAVRN+RRDA + +KL+K K+LSED+++ D+QKLTD ++ K D KEKE++
Sbjct: 125 AKVAVRNVRRDANEQLKKLEKNKELSEDDLRKAQEDVQKLTDRFVAKTDEKAGAKEKEIM 184
Query: 275 KV 276
+
Sbjct: 185 DI 186
>gi|226322655|ref|ZP_03798173.1| hypothetical protein COPCOM_00427 [Coprococcus comes ATCC 27758]
gi|225208992|gb|EEG91346.1| ribosome recycling factor [Coprococcus comes ATCC 27758]
Length = 183
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 124/174 (71%), Gaps = 1/174 (0%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++TI + T S+R GR+NP +L+K+ VEYYG+P ++ +A I+ P++ + IQP++
Sbjct: 11 KMQKTIHALDTELASIRAGRANPNILNKLTVEYYGTPTPIQQVANISVPEARMIQIQPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K +K IEKAI+ SD+G+ P NDG VIRL P+LT ERRKEL K V K+ E KVAVRNI
Sbjct: 71 KKIIKDIEKAILMSDIGINPTNDGTVIRLVFPELTEERRKELVKDVKKKGEASKVAVRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD A++KL K +SED ++DL +QKLTD+Y+K++D+ K KE++ V
Sbjct: 131 RRDGNDAFKKL-KGTDVSEDEIQDLEDQIQKLTDKYIKEVDAAVDAKSKEVMTV 183
>gi|224540949|ref|ZP_03681488.1| hypothetical protein CATMIT_00100 [Catenibacterium mitsuokai DSM
15897]
gi|224526100|gb|EEF95205.1| ribosome recycling factor [Catenibacterium mitsuokai DSM 15897]
Length = 181
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 89/179 (49%), Positives = 125/179 (69%), Gaps = 4/179 (2%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
++ K +ME++++ ++RTGR+NP+MLD++ VEYYGSP L +A I+ + L+
Sbjct: 7 EEAKEKMEKSVEAFSNELVNIRTGRANPSMLDRVMVEYYGSPTPLNQVAGISVVEGRQLV 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I+PYDK+S+K IE I +DLG+TP NDG VIR+ +P LT ERRKE+ K V K AEE KV
Sbjct: 67 IKPYDKNSMKDIEHGIYQADLGLTPQNDGTVIRIVIPPLTEERRKEMVKQVNKLAEEAKV 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RNIRR+A EK + +ED VK D+Q LT+E++KKID I K+KEK+L+ V
Sbjct: 127 ALRNIRRNANTDVEKTGE----TEDEVKAGKEDVQDLTNEFVKKIDQIAKEKEKDLMTV 181
>gi|313679984|ref|YP_004057723.1| ribosome recycling factor [Oceanithermus profundus DSM 14977]
gi|313152699|gb|ADR36550.1| ribosome recycling factor [Oceanithermus profundus DSM 14977]
Length = 185
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 131/177 (74%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+ + M++T+++ +N ++RTGR+NPA+L+ I+V+YYGS + L +A I+ PD+ +L+
Sbjct: 7 KETREHMQKTLEVFESNLATLRTGRANPALLEHIKVDYYGSMMPLNQLASISAPDARTLV 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
+Q +D+++L IEKAI SDLG+ PNN G+ + + +P LT+ERRKE+ K AEE +V
Sbjct: 67 VQAWDQNALPLIEKAIRDSDLGLNPNNQGDTLFINIPALTAERRKEIVKAAHNYAEEARV 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
AVRNIRRDAL +K+ +E+ L ED+VK ++Q+LTDE+++KI++ + KEKE+L
Sbjct: 127 AVRNIRRDALHRIKKMSEEEHLPEDDVKRAEKEVQELTDEFIEKINAELEAKEKEIL 183
>gi|417770633|ref|ZP_12418539.1| ribosome recycling factor [Leptospira interrogans serovar Pomona
str. Pomona]
gi|418680693|ref|ZP_13241937.1| ribosome recycling factor [Leptospira interrogans serovar Pomona
str. Kennewicki LC82-25]
gi|418712134|ref|ZP_13272879.1| ribosome recycling factor [Leptospira interrogans str. UI 08452]
gi|418728060|ref|ZP_13286640.1| ribosome recycling factor [Leptospira interrogans str. UI 12758]
gi|421117600|ref|ZP_15577959.1| ribosome recycling factor [Leptospira interrogans serovar Canicola
str. Fiocruz LV133]
gi|400327637|gb|EJO79882.1| ribosome recycling factor [Leptospira interrogans serovar Pomona
str. Kennewicki LC82-25]
gi|409947405|gb|EKN97403.1| ribosome recycling factor [Leptospira interrogans serovar Pomona
str. Pomona]
gi|410010814|gb|EKO68946.1| ribosome recycling factor [Leptospira interrogans serovar Canicola
str. Fiocruz LV133]
gi|410777105|gb|EKR57073.1| ribosome recycling factor [Leptospira interrogans str. UI 12758]
gi|410791401|gb|EKR85077.1| ribosome recycling factor [Leptospira interrogans str. UI 08452]
gi|455669726|gb|EMF34787.1| ribosome recycling factor [Leptospira interrogans serovar Pomona
str. Fox 32256]
Length = 184
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 129/178 (72%), Gaps = 4/178 (2%)
Query: 100 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQ 159
+K +M++TID+V+ +F ++RTGR+NP++++ I V+YYG+ + + I+ P+ L+I
Sbjct: 10 MKTKMDKTIDLVKKDFGTIRTGRANPSLVEDIRVDYYGNQTPINQLGNISVPEPRMLVIS 69
Query: 160 PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAV 219
PYDK +K IEKAI +S LG+ P NDG VIR+ +P+LT ERRKEL+KVV ++EE KVA+
Sbjct: 70 PYDKGIMKDIEKAIQTSGLGLQPTNDGVVIRIVIPELTGERRKELAKVVKSKSEEKKVAI 129
Query: 220 RNIRRDALKAYEKLQKE-KKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RNIRRDA+ E L+K + +S+D +K + +QK+TD Y+ KI S+ +KEKE+ +
Sbjct: 130 RNIRRDAM---EDLKKHTEGMSQDEIKSVQDQIQKITDSYIDKISSLTAEKEKEITTI 184
>gi|410697298|gb|AFV76366.1| ribosome recycling factor [Thermus oshimai JL-2]
Length = 185
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 126/176 (71%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ +A M+++++ + N +RTGR+NPA+L ++VEYYG+ V L IA + PD+ +L++
Sbjct: 9 ETRAHMQKSLEALEHNLAGLRTGRANPALLLHLKVEYYGTHVPLNQIATVTAPDARTLVV 68
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
Q +D+++LK+IEKAI SDLG+ P N G+ + + +P LT ERRKEL + AEEG++A
Sbjct: 69 QSWDQNALKAIEKAIRDSDLGLNPANKGDALYINIPPLTEERRKELVRAARHYAEEGRIA 128
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
+RNIRR+AL +KL KE LSED K ++QK+TDE++ K+D++ ++KE E+L
Sbjct: 129 IRNIRREALDTLKKLAKELHLSEDETKRAEGEIQKITDEFIAKVDALAEKKEAEIL 184
>gi|290968867|ref|ZP_06560404.1| ribosome recycling factor [Megasphaera genomosp. type_1 str. 28L]
gi|335048939|ref|ZP_08541951.1| ribosome recycling factor [Megasphaera sp. UPII 199-6]
gi|290781163|gb|EFD93754.1| ribosome recycling factor [Megasphaera genomosp. type_1 str. 28L]
gi|333764722|gb|EGL42108.1| ribosome recycling factor [Megasphaera sp. UPII 199-6]
Length = 186
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 131/174 (75%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++TI+ ++ +F S+RTGR++ ++LD++ VEYYG+P +K +A ++ P+ S + I P++
Sbjct: 13 KMDKTIEALKRDFTSIRTGRASTSLLDRVTVEYYGTPTPIKQVANVSAPEPSLITIVPWE 72
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
+ L IEKAI+ SDLG+ PNNDG +IRL +P+ T ERRKEL+K V+K AEE KV +RNI
Sbjct: 73 RKILGDIEKAILKSDLGLNPNNDGAMIRLEIPKPTEERRKELTKKVSKYAEEAKVVIRNI 132
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA + +K +K K+++ED KD+ +QKLTD+ +K ID + +KEKE+++V
Sbjct: 133 RRDANDSIKKAEKAKEITEDESKDVQDKIQKLTDKKVKFIDELKLKKEKEVMEV 186
>gi|429247619|ref|ZP_19210859.1| ribosome recycling factor [Clostridium botulinum CFSAN001628]
gi|428755364|gb|EKX77995.1| ribosome recycling factor [Clostridium botulinum CFSAN001628]
Length = 172
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 123/173 (71%), Gaps = 1/173 (0%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M +TI ++ S++ GR+NPAMLD+IE EYYGS L + I+ P++ LLIQP+DK
Sbjct: 1 MGKTIVALKRELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVLLIQPWDK 60
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
S+L +IEKAI+ SDLG+ P+NDG VIRL +P+LT E RK + K V K EE KVA+R+IR
Sbjct: 61 SALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAKVAIRSIR 120
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RD + L+K+ +SED++K D+QK TD+Y+K+IDSI KEKE+L +
Sbjct: 121 RDCNDDVKNLKKD-DVSEDDIKKAEDDIQKKTDKYIKEIDSIISAKEKEILSI 172
>gi|419767496|ref|ZP_14293649.1| ribosome recycling factor [Streptococcus mitis SK579]
gi|383353039|gb|EID30666.1| ribosome recycling factor [Streptococcus mitis SK579]
Length = 185
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/181 (50%), Positives = 125/181 (69%), Gaps = 1/181 (0%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
IEK K RM ++ + F +R GR+N ++LD++ VEYYG L IA I P++
Sbjct: 6 IEK-AKERMTQSHQSLAREFGGIRAGRANASLLDRVYVEYYGVETPLNQIASITIPEARV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K E
Sbjct: 65 LLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVAVRNIRRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKELL+
Sbjct: 125 KVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|269837765|ref|YP_003319993.1| ribosome recycling factor [Sphaerobacter thermophilus DSM 20745]
gi|269787028|gb|ACZ39171.1| ribosome recycling factor [Sphaerobacter thermophilus DSM 20745]
Length = 185
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 128/178 (71%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + RM +T+D ++ +RTGR++P +++++EV+YYG+P L +A I+ P+ L++
Sbjct: 8 DAEGRMTKTLDNLQRELAGIRTGRASPGLIERLEVDYYGTPTPLNQVAGISAPEPRLLVV 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D+S++ +IEKAI SSDLG+ P NDG+VIR+ +P LT ERRK L +VV ++ EE +VA
Sbjct: 68 QPWDRSAMSAIEKAIRSSDLGLNPTNDGQVIRIAIPPLTEERRKALVRVVRQKVEESRVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDAL +++ +EK + ED+ + +Q+LT+ Y+ + D I K KE E+L+V
Sbjct: 128 IRNIRRDALAQVKEMLQEKLIGEDDERRAEQQVQELTNRYINEADKIGKNKEAEVLEV 185
>gi|15902890|ref|NP_358440.1| ribosome recycling factor [Streptococcus pneumoniae R6]
gi|116516857|ref|YP_816318.1| ribosome recycling factor [Streptococcus pneumoniae D39]
gi|421265969|ref|ZP_15716852.1| ribosome recycling factor [Streptococcus pneumoniae SPAR27]
gi|32171542|sp|Q8DQ49.1|RRF_STRR6 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|122278796|sp|Q04KY0.1|RRF_STRP2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|15458449|gb|AAK99650.1| Ribosome recycling factor [Streptococcus pneumoniae R6]
gi|116077433|gb|ABJ55153.1| ribosome recycling factor [Streptococcus pneumoniae D39]
gi|395868705|gb|EJG79822.1| ribosome recycling factor [Streptococcus pneumoniae SPAR27]
Length = 185
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/181 (49%), Positives = 125/181 (69%), Gaps = 1/181 (0%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
IEK K RM ++ + F +R GR+N ++LD++ VEYYG L IA I P++
Sbjct: 6 IEK-AKERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LL+ P+DKSSLK I++A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K E
Sbjct: 65 LLVTPFDKSSLKDIDRALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVAVRNIRRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKELL+
Sbjct: 125 KVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|282854667|ref|ZP_06264002.1| ribosome recycling factor [Propionibacterium acnes J139]
gi|386069764|ref|YP_005984660.1| ribosome recycling factor [Propionibacterium acnes ATCC 11828]
gi|422390156|ref|ZP_16470252.1| ribosome recycling factor [Propionibacterium acnes HL103PA1]
gi|422458673|ref|ZP_16535324.1| ribosome recycling factor [Propionibacterium acnes HL050PA2]
gi|422462943|ref|ZP_16539562.1| ribosome recycling factor [Propionibacterium acnes HL060PA1]
gi|422467222|ref|ZP_16543776.1| ribosome recycling factor [Propionibacterium acnes HL110PA4]
gi|422469298|ref|ZP_16545823.1| ribosome recycling factor [Propionibacterium acnes HL110PA3]
gi|422565346|ref|ZP_16640995.1| ribosome recycling factor [Propionibacterium acnes HL082PA2]
gi|422575396|ref|ZP_16650937.1| ribosome recycling factor [Propionibacterium acnes HL001PA1]
gi|282582249|gb|EFB87631.1| ribosome recycling factor [Propionibacterium acnes J139]
gi|314923764|gb|EFS87595.1| ribosome recycling factor [Propionibacterium acnes HL001PA1]
gi|314966222|gb|EFT10321.1| ribosome recycling factor [Propionibacterium acnes HL082PA2]
gi|314981988|gb|EFT26081.1| ribosome recycling factor [Propionibacterium acnes HL110PA3]
gi|315090899|gb|EFT62875.1| ribosome recycling factor [Propionibacterium acnes HL110PA4]
gi|315095112|gb|EFT67088.1| ribosome recycling factor [Propionibacterium acnes HL060PA1]
gi|315104341|gb|EFT76317.1| ribosome recycling factor [Propionibacterium acnes HL050PA2]
gi|327328110|gb|EGE69879.1| ribosome recycling factor [Propionibacterium acnes HL103PA1]
gi|353454131|gb|AER04650.1| ribosome recycling factor [Propionibacterium acnes ATCC 11828]
Length = 184
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/183 (45%), Positives = 126/183 (68%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S I KD + +M +D R F ++RTGR+NPAM +K+ VEYYG+P L+ +A P++
Sbjct: 2 SDIIKDAEKKMGSAVDHAREEFAAIRTGRANPAMFNKLMVEYYGTPTPLQQLASFQVPEA 61
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
++LI P+DKS + +EKAI SDLG+ P+NDG V+R LP LT ERRKE K+ +AE
Sbjct: 62 RTVLIAPFDKSCVNDVEKAIRDSDLGVNPSNDGNVVRCVLPALTEERRKEYIKMAKTKAE 121
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
EG++AVRN+RR + +K +K+K +SED + L +L ++T +Y+++ID + K KE EL
Sbjct: 122 EGRIAVRNVRRASNDVVKKQEKDKDISEDEMTRLEKELDQVTRKYVEQIDELLKSKESEL 181
Query: 274 LKV 276
L++
Sbjct: 182 LEI 184
>gi|347734079|ref|ZP_08867131.1| ribosome recycling factor [Desulfovibrio sp. A2]
gi|347517171|gb|EGY24364.1| ribosome recycling factor [Desulfovibrio sp. A2]
Length = 184
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 129/178 (72%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + RME+ + + F +RTGR++ +++D I+V+YYG+P + +A ++ PDS +L I
Sbjct: 7 DAEERMEKALGALDREFAKLRTGRASTSLVDNIKVDYYGTPTPISQLASVSVPDSRTLTI 66
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D+S+ +EKAI+ SDLG+ P NDG++IR+++P LT ERRK+L KV K EE KVA
Sbjct: 67 QPWDRSAFPLVEKAIMKSDLGLNPVNDGKIIRISIPPLTEERRKDLVKVARKYTEEAKVA 126
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRN+RRDA A +KL+K K++SED+V+ + D+QKLTD ++ K D KEKE++++
Sbjct: 127 VRNVRRDANDALKKLEKGKEISEDDVRKSTDDVQKLTDRFVAKSDEKCTAKEKEIMEL 184
>gi|303247584|ref|ZP_07333855.1| ribosome recycling factor [Desulfovibrio fructosovorans JJ]
gi|302491064|gb|EFL50958.1| ribosome recycling factor [Desulfovibrio fructosovorans JJ]
Length = 184
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 128/182 (70%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
++ KD + RM++ + + F +RTGR+ ++LD I V+YYG+P L +A ++TPDS
Sbjct: 3 AVLKDAEDRMQKALASLDKEFARLRTGRATTSLLDGIRVDYYGTPTPLDQMASVSTPDSR 62
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
++ I P+D+ + +EKAI+ SDLG+TP NDG++IR+++P LT +RRK+L+KV K AEE
Sbjct: 63 TITIAPWDRKAFHDVEKAILKSDLGLTPVNDGKIIRISIPPLTEDRRKDLAKVAKKYAEE 122
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
KVA+RNIRRDA A +K + +K +SED+ D+QKLTD Y+ K D +KEKE++
Sbjct: 123 AKVAIRNIRRDANDALKKKKNDKAISEDDQHKGQEDVQKLTDAYIAKADDALAKKEKEIM 182
Query: 275 KV 276
++
Sbjct: 183 EI 184
>gi|379011798|ref|YP_005269610.1| ribosome recycling factor Frr [Acetobacterium woodii DSM 1030]
gi|375302587|gb|AFA48721.1| ribosome recycling factor Frr [Acetobacterium woodii DSM 1030]
Length = 186
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 128/174 (73%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+ME+ + + + S+R GR+NP +LDK+ V+YYGSP L +A I+TP++ ++IQPYD
Sbjct: 13 KMEKALKNLNESLGSLRAGRANPRILDKVLVDYYGSPTGLNQLANISTPEARMIVIQPYD 72
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
+++ +IEK+I+ SDLG P+NDG++IRL +PQLT ERRKEL K+V K EE KVA+RNI
Sbjct: 73 ATAIPAIEKSILKSDLGFNPSNDGKIIRLLIPQLTEERRKELVKLVKKYGEECKVAMRNI 132
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RR A++ + QKE ++ED++K ++QK+TD+ +K I+ I K KE E+L+V
Sbjct: 133 RRHAIQDLKDSQKEGLITEDDLKQGEKEIQKVTDDEIKNIELILKDKETEILEV 186
>gi|225026987|ref|ZP_03716179.1| hypothetical protein EUBHAL_01243 [Eubacterium hallii DSM 3353]
gi|224955672|gb|EEG36881.1| ribosome recycling factor [Eubacterium hallii DSM 3353]
Length = 181
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 124/174 (71%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M+++I+ + +NS+R GR+NP +LDKI+V+YYG+P L+ + I+ P+ + IQP++
Sbjct: 8 KMQKSIESLEREYNSIRAGRANPHVLDKIKVDYYGTPTPLQQVGNISVPEPRIITIQPWE 67
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
S LK+IEK I+ SD+G+ P NDG+VIRL P+LT ERRKEL K V K+ E KVA+RNI
Sbjct: 68 TSLLKAIEKEIMQSDIGINPTNDGKVIRLVFPELTEERRKELVKDVKKKGEAAKVAIRNI 127
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA + +K K +++ED +KD +QK TD+Y+K ID + +K KE+L V
Sbjct: 128 RRDANDSLKKANKNSEITEDELKDQQDKVQKATDKYIKTIDGMIDKKSKEILTV 181
>gi|325295600|ref|YP_004282114.1| ribosome-recycling factor [Desulfurobacterium thermolithotrophum
DSM 11699]
gi|325066048|gb|ADY74055.1| Ribosome-recycling factor [Desulfurobacterium thermolithotrophum
DSM 11699]
Length = 185
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 84/179 (46%), Positives = 130/179 (72%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
KD RM++ +++++T+F +RTGR++ +++ I+V+YYGS +++K IAQI P+ + +
Sbjct: 7 KDADNRMKKAVEVLKTDFAGLRTGRASTVLVEDIKVDYYGSIMTIKQIAQIAVPEPTQIT 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D S + +IEKAI SDLG+ P DG +IR+ LP LT ERRKEL K K AE+ K+
Sbjct: 67 IQPWDVSVIPNIEKAIRESDLGVQPQRDGNIIRINLPPLTEERRKELVKKAGKMAEQAKI 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RNIR + +K +KL+KE SED++K +LQK+TD++ KKID + ++KE+E+L V
Sbjct: 127 AIRNIRHEIMKELDKLKKEGGYSEDDIKRAKDELQKITDKHTKKIDELLQKKEEEILTV 185
>gi|357633491|ref|ZP_09131369.1| ribosome recycling factor [Desulfovibrio sp. FW1012B]
gi|357582045|gb|EHJ47378.1| ribosome recycling factor [Desulfovibrio sp. FW1012B]
Length = 184
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 127/174 (72%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM++ + ++ F +RTGR+ ++LD + VEYYGS L+ IA ++TPDS ++ IQP+D
Sbjct: 11 RMKKALSVLDKEFARLRTGRATTSLLDGVRVEYYGSVTPLEQIASVSTPDSRTITIQPWD 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
+ + +E+AI+ SDLG+TP NDG++IR+++P LT +RRK+L+KV K AEE KVA+RN+
Sbjct: 71 RKAFNDVERAILKSDLGLTPVNDGKIIRISIPPLTEDRRKDLAKVAKKYAEEAKVAIRNV 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA +A +K + +K +SED+ D+QKLTD Y+ K D + +KEKE++++
Sbjct: 131 RRDANEALKKKKNDKAISEDDQHKGQEDVQKLTDGYIAKTDEAFSKKEKEIMEI 184
>gi|253580861|ref|ZP_04858124.1| ribosome recycling factor [Ruminococcus sp. 5_1_39B_FAA]
gi|251847931|gb|EES75898.1| ribosome recycling factor [Ruminococcus sp. 5_1_39BFAA]
Length = 183
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 127/174 (72%), Gaps = 1/174 (0%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++T+ + + ++R GR+NP +LDK+ V+YYG+P L+ +A I P++ + IQP++
Sbjct: 11 KMKKTLASLESELVTIRAGRANPHILDKLAVDYYGAPTPLQQVANITVPEARMIQIQPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
S +K IEKAI++SDLG+ P+NDG+VIRL P+LT ERRKEL K V K+ E KVAVRNI
Sbjct: 71 SSLIKGIEKAILTSDLGLNPSNDGKVIRLVFPELTEERRKELVKDVKKKGEAAKVAVRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA A++KL K+ +SED +K+L +QK TD+Y+K++D+ K KE++ V
Sbjct: 131 RRDANDAFKKLAKQ-DVSEDEIKELEEKIQKSTDKYIKEVDAAVDAKSKEIMTV 183
>gi|85712041|ref|ZP_01043095.1| Ribosome recycling factor [Idiomarina baltica OS145]
gi|85694227|gb|EAQ32171.1| Ribosome recycling factor [Idiomarina baltica OS145]
Length = 185
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 89/183 (48%), Positives = 131/183 (71%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I KD K RME++++ +R+ + VRTGR++P++LD + V YYG LK +A I T DS
Sbjct: 3 NDIIKDAKERMEKSVESLRSQMSKVRTGRAHPSILDSVMVNYYGVDTPLKQLANITTEDS 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L + +DKSS +++EKAI++SDLG+ P + G VIR+ LP LT ERR++L K+V +AE
Sbjct: 63 RTLALTVFDKSSAQAVEKAILTSDLGLNPASAGAVIRIPLPPLTEERRRDLVKIVRAEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+ +VAVRNIRRDA ++L KEK+++ED D+QKLTD Y+KKID K KE++L
Sbjct: 123 QARVAVRNIRRDANNDLKELLKEKEITEDEEHSAEDDVQKLTDTYVKKIDESLKAKEQDL 182
Query: 274 LKV 276
++V
Sbjct: 183 MEV 185
>gi|357639107|ref|ZP_09136980.1| ribosome recycling factor [Streptococcus urinalis 2285-97]
gi|418418155|ref|ZP_12991346.1| ribosome-recycling factor [Streptococcus urinalis FB127-CNA-2]
gi|357587561|gb|EHJ56969.1| ribosome recycling factor [Streptococcus urinalis 2285-97]
gi|410869254|gb|EKS17217.1| ribosome-recycling factor [Streptococcus urinalis FB127-CNA-2]
Length = 185
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 122/174 (70%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
R E++ + + S+R GR+N ++LD+I+V+YYG+P L +A I P++ LLI P+D
Sbjct: 12 RFEQSHQSLSREYASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KSS+K IE+AI SDLG+ P NDG VIRL +P LT E RK+L+K V K E K+A+RNI
Sbjct: 72 KSSIKDIERAINESDLGINPANDGSVIRLVIPALTEETRKDLAKEVKKIGENAKIAIRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA+ +K +K+K+++ED +K L D+QK TDE +K ID + KE+ELL V
Sbjct: 132 RRDAMDEAKKQEKDKEITEDELKSLEKDIQKATDEAVKHIDKMTADKEEELLSV 185
>gi|315641203|ref|ZP_07896280.1| ribosome recycling factor [Enterococcus italicus DSM 15952]
gi|315482970|gb|EFU73489.1| ribosome recycling factor [Enterococcus italicus DSM 15952]
Length = 185
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 128/182 (70%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
+I ++K +ME+T + ++ +R GR+N ++LD+I V YYG+P + +A I P++
Sbjct: 4 AILNEIKTKMEKTAENLQRELGQIRAGRANASLLDRISVVYYGAPTPINQLASITIPEAR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
L+I P+DKS+LK IEKAI++SD+G+ P +DG VIRL +PQLT ERRKEL K V K+ E
Sbjct: 64 ILMITPFDKSTLKDIEKAILASDIGINPTSDGNVIRLVIPQLTEERRKELVKEVKKETES 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
K+A+RN RRD + +Y+K QK ++ED+++ +Q+LTD +K++D I KE+ELL
Sbjct: 124 AKIAIRNARRDGMDSYKKQQKAGDITEDDLRTSEKTIQELTDASIKELDKIAASKEEELL 183
Query: 275 KV 276
+V
Sbjct: 184 EV 185
>gi|113461129|ref|YP_719197.1| ribosome recycling factor [Haemophilus somnus 129PT]
gi|170717712|ref|YP_001784784.1| ribosome recycling factor [Haemophilus somnus 2336]
gi|122945268|sp|Q0I379.1|RRF_HAES1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|189044058|sp|B0UUI5.1|RRF_HAES2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|112823172|gb|ABI25261.1| ribosome recycling factor [Haemophilus somnus 129PT]
gi|168825841|gb|ACA31212.1| ribosome recycling factor [Haemophilus somnus 2336]
Length = 185
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 81/181 (44%), Positives = 131/181 (72%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I+KD + RME++++ +RT+ +RTGR+ P++LD I+VEYYGSP L+ +A + D+
Sbjct: 3 NEIKKDTQQRMEKSLETLRTHIAKIRTGRAQPSLLDGIQVEYYGSPTPLRQLANVVAEDA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L + +D+S + ++EKAI++SDLG+ P++ G IR+ LP LT ERR++L K+V + E
Sbjct: 63 RTLAVTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+GK+A+RN+RRDA + L K+K++SED + ++QK+TD ++KK+D I KEKEL
Sbjct: 123 QGKIAIRNVRRDANDQIKALLKDKEISEDEERKAQDEIQKITDTFVKKVDEILADKEKEL 182
Query: 274 L 274
L
Sbjct: 183 L 183
>gi|260437176|ref|ZP_05790992.1| ribosome recycling factor [Butyrivibrio crossotus DSM 2876]
gi|292810489|gb|EFF69694.1| ribosome recycling factor [Butyrivibrio crossotus DSM 2876]
Length = 184
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 85/183 (46%), Positives = 129/183 (70%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S I K + +M ++ D + ++ ++R GR+NP +LDK++V+YYG+P + +A ++ P++
Sbjct: 2 SEIIKTYEEKMIKSCDTLAADYVTIRAGRANPHILDKLKVDYYGTPTPFQQVANVSVPEA 61
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+ IQP++ S LK IEKAI+ SDLG+TP NDG+VIRL P+LT +RRKEL K + K+ E
Sbjct: 62 RMIQIQPWETSLLKEIEKAILMSDLGLTPTNDGKVIRLVFPELTEDRRKELVKDIKKKGE 121
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
KVA+RNIRRDA A +KL K+ +SED VK +QKLTD+Y+ ++D + +K KE+
Sbjct: 122 NTKVAIRNIRRDANDAIKKLSKDTDMSEDEVKKNEDSIQKLTDKYVAQVDKMIDEKSKEI 181
Query: 274 LKV 276
+ V
Sbjct: 182 MTV 184
>gi|257792211|ref|YP_003182817.1| ribosome recycling factor [Eggerthella lenta DSM 2243]
gi|317490131|ref|ZP_07948620.1| ribosome recycling factor [Eggerthella sp. 1_3_56FAA]
gi|325833584|ref|ZP_08166033.1| ribosome recycling factor [Eggerthella sp. HGA1]
gi|257476108|gb|ACV56428.1| ribosome recycling factor [Eggerthella lenta DSM 2243]
gi|316910836|gb|EFV32456.1| ribosome recycling factor [Eggerthella sp. 1_3_56FAA]
gi|325485508|gb|EGC87977.1| ribosome recycling factor [Eggerthella sp. HGA1]
Length = 185
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 121/174 (69%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RME+ + + F SVRTGR+N +LD+I V+YYG P + +A + TPD+ L+I+P+D
Sbjct: 12 RMEKALGSLGDAFASVRTGRANAMVLDRIRVDYYGVPTPVNQMAGVKTPDAHMLVIEPWD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K L +IE AI+ SDLG+TP+NDG VIRL P LT ERR+EL K AEE +VAVRN
Sbjct: 72 KGVLGAIEHAILQSDLGVTPSNDGSVIRLPFPALTEERRRELVKQCKGYAEEARVAVRNA 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA A E+ KE L ED+ + +++QKLTD+Y+ ++D +K+KE E++++
Sbjct: 132 RRDANSAIERAVKEDSLPEDDERRGQAEVQKLTDKYIAEVDEAFKKKEAEVMEI 185
>gi|421876656|ref|ZP_16308211.1| Ribosome-recycling factor [Leuconostoc citreum LBAE C10]
gi|372557530|emb|CCF24331.1| Ribosome-recycling factor [Leuconostoc citreum LBAE C10]
Length = 181
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 85/178 (47%), Positives = 130/178 (73%), Gaps = 3/178 (1%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D K+RM+ D ++ S+RTGR+NP +LD+IEVEYYG+ L +A I+ P++ LLI
Sbjct: 7 DAKSRMQGAQDALQRELTSIRTGRANPHILDRIEVEYYGAMTPLNQVASISVPEARVLLI 66
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
P+DK++L+ I +AI SDLG+ P++DG ++RL +PQ+T E RK+L+K V +AE+ KV+
Sbjct: 67 TPFDKTALEEIIRAINMSDLGLNPSSDGNIVRLMIPQMTEEGRKDLAKQVKAEAEKAKVS 126
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRN+RRDA+ + ++K+K++ ED+V+ +D+QKLTD +K ID I +KEKELL +
Sbjct: 127 VRNVRRDAM---DSVKKDKEMPEDDVRKAENDIQKLTDNNIKAIDDIVSEKEKELLTI 181
>gi|373454686|ref|ZP_09546550.1| ribosome recycling factor [Dialister succinatiphilus YIT 11850]
gi|371935549|gb|EHO63294.1| ribosome recycling factor [Dialister succinatiphilus YIT 11850]
Length = 185
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 85/179 (47%), Positives = 132/179 (73%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K + +M+++I+ +++ F S+RTG++N ++LD+I VEYYGS + +A + P++ L+
Sbjct: 7 KTLSEKMDKSINALKSEFTSIRTGQANASLLDRIFVEYYGSRTPVTQVASVTVPEARMLV 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
+QP+DKS LK IEKAI+ SDLG+ P NDG +IR+ +PQLT ERRKEL KVV K++EE KV
Sbjct: 67 VQPWDKSLLKEIEKAILQSDLGLVPMNDGNLIRMAIPQLTEERRKELVKVVNKKSEEAKV 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
AVRNIRRD +K +K +S+D +KD +QKLTD+ +K+++++ ++K KE++ V
Sbjct: 127 AVRNIRRDGNVFLKKEEKNSDVSKDIIKDTEDKIQKLTDKKIKEVEAVTERKIKEIMSV 185
>gi|148380389|ref|YP_001254930.1| ribosome recycling factor [Clostridium botulinum A str. ATCC 3502]
gi|153933414|ref|YP_001384607.1| ribosome recycling factor [Clostridium botulinum A str. ATCC 19397]
gi|153934708|ref|YP_001388123.1| ribosome recycling factor [Clostridium botulinum A str. Hall]
gi|166230778|sp|A7FPZ5.1|RRF_CLOB1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|166230779|sp|A5I4K9.1|RRF_CLOBH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|148289873|emb|CAL83981.1| ribosome recycling factor [Clostridium botulinum A str. ATCC 3502]
gi|152929458|gb|ABS34958.1| ribosome recycling factor [Clostridium botulinum A str. ATCC 19397]
gi|152930622|gb|ABS36121.1| ribosome recycling factor [Clostridium botulinum A str. Hall]
Length = 184
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 123/174 (70%), Gaps = 1/174 (0%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +TI ++ S++ GR+NPAMLD+IE EYYGS L + I+ P++ LLIQP+D
Sbjct: 12 KMGKTIVALKKELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVLLIQPWD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K +L +IEKAI+ SDLG+ P+NDG VIRL +P+LT E RK + K V K EE KVA+R+I
Sbjct: 72 KGALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAKVAIRSI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD + L+K+ +SED++K D+QK TD+Y+K+IDSI KEKE+L +
Sbjct: 132 RRDCNDDVKNLKKD-DVSEDDIKKAEDDIQKKTDKYIKEIDSIISAKEKEILSI 184
>gi|343521136|ref|ZP_08758104.1| ribosome recycling factor [Parvimonas sp. oral taxon 393 str.
F0440]
gi|343396342|gb|EGV08879.1| ribosome recycling factor [Parvimonas sp. oral taxon 393 str.
F0440]
Length = 185
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 81/181 (44%), Positives = 133/181 (73%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I K+++ +M ++I+ T +VR GR+NPA+LD+ V YYG+ +K +A I+ P++
Sbjct: 5 IIKELERKMTKSIESYETELTTVRAGRANPAILDQFSVNYYGTDTPIKQVASISVPEARL 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L+IQP+D S + IEK +++S+LG+TP+NDG+VIRL P LT +RRKEL KVV AE
Sbjct: 65 LVIQPWDASLITPIEKVLLASNLGITPSNDGKVIRLPFPALTEDRRKELVKVVKGYAENA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
K+A+RN+RRD + +K++K+K++SED ++ ++QK+TD+++K+++ I K KEKEL++
Sbjct: 125 KIAIRNLRRDGIDKLKKMEKDKEISEDELRQAEEEVQKVTDKFVKEVEEITKSKEKELME 184
Query: 276 V 276
+
Sbjct: 185 I 185
>gi|317051930|ref|YP_004113046.1| ribosome recycling factor [Desulfurispirillum indicum S5]
gi|316947014|gb|ADU66490.1| ribosome recycling factor [Desulfurispirillum indicum S5]
Length = 185
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 79/178 (44%), Positives = 134/178 (75%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+VK +M++ ++ R +F+++RTGR++ A+LD ++V+YYG+P LK + PD++++ I
Sbjct: 8 EVKEKMQKAVEATRKDFSTLRTGRASTALLDNVKVDYYGTPTPLKQAGSVTIPDATTISI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP++ L +IEKAIV+++LG+TP+NDG++IR+++P LT +RRKEL++ V K AE+G++A
Sbjct: 68 QPWEPHMLPAIEKAIVAANLGVTPSNDGQMIRISIPPLTEDRRKELTRQVKKFAEDGRIA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRNIRR + + L+K+K ++ED K ++QK+TD ++K ID + + KEKEL+ V
Sbjct: 128 VRNIRRFGNDSVKALEKDKLITEDEAKRAQEEVQKITDGFVKTIDEMAEAKEKELMTV 185
>gi|433449302|ref|ZP_20412166.1| ribosome recycling factor [Weissella ceti NC36]
gi|429538816|gb|ELA06854.1| ribosome recycling factor [Weissella ceti NC36]
Length = 185
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 119/174 (68%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM + D ++ +R G +NP++L + V+YYG+P L +A + P+S LLI P+D
Sbjct: 12 RMGKAADALQRELGQIRAGVANPSILRPVTVDYYGAPTPLNQLASVTVPESRVLLIAPFD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS+LK IE+AI +SDLG+TP NDG VIRL +P LT E RKEL+K V +AE+ KVAVRNI
Sbjct: 72 KSALKDIEQAIFASDLGLTPANDGTVIRLVIPALTEETRKELAKDVKAEAEKSKVAVRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA+ +K K ++SED L D+QK TD +K++D++ +KEKELL +
Sbjct: 132 RRDAMDDIKKALKASEMSEDEAHGLEEDVQKATDGAVKQLDAVAAEKEKELLTI 185
>gi|269217144|ref|ZP_06160998.1| ribosome recycling factor [Slackia exigua ATCC 700122]
gi|402828084|ref|ZP_10876975.1| ribosome recycling factor [Slackia sp. CM382]
gi|269129281|gb|EEZ60366.1| ribosome recycling factor [Slackia exigua ATCC 700122]
gi|402286685|gb|EJU35147.1| ribosome recycling factor [Slackia sp. CM382]
Length = 186
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 83/173 (47%), Positives = 123/173 (71%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
ME+ + ++ F VRTGR+N +LDK++V+YYG P + +A + PD+ L I+P+DK
Sbjct: 14 MEKALSNLKEAFAGVRTGRANAMVLDKVKVDYYGVPTPVNQMAAVKVPDAHMLTIEPWDK 73
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
S +++IE AI++SDLG+TP+NDG VIRL PQLT ERR++L+K +EEG+VAVR R
Sbjct: 74 SMVRAIEAAILASDLGITPSNDGSVIRLPFPQLTEERRRDLAKQCKTFSEEGRVAVRKAR 133
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A A EKL+K ++SED+ + +QKLTD Y+KK+D ++K+KE EL+ +
Sbjct: 134 GAANAAVEKLKKASEISEDDARRDEESIQKLTDSYIKKVDEMFKKKEAELMAI 186
>gi|125718424|ref|YP_001035557.1| ribosome recycling factor [Streptococcus sanguinis SK36]
gi|323351162|ref|ZP_08086818.1| ribosome recycling factor [Streptococcus sanguinis VMC66]
gi|401681510|ref|ZP_10813410.1| ribosome recycling factor [Streptococcus sp. AS14]
gi|422820823|ref|ZP_16869016.1| ribosome recycling factor [Streptococcus sanguinis SK353]
gi|422823145|ref|ZP_16871333.1| ribosome recycling factor [Streptococcus sanguinis SK405]
gi|422826768|ref|ZP_16874947.1| ribosome recycling factor [Streptococcus sanguinis SK678]
gi|422847126|ref|ZP_16893809.1| ribosome recycling factor [Streptococcus sanguinis SK72]
gi|422848211|ref|ZP_16894887.1| ribosome recycling factor [Streptococcus sanguinis SK115]
gi|422851207|ref|ZP_16897877.1| ribosome recycling factor [Streptococcus sanguinis SK150]
gi|422854694|ref|ZP_16901358.1| ribosome recycling factor [Streptococcus sanguinis SK160]
gi|422855092|ref|ZP_16901750.1| ribosome recycling factor [Streptococcus sanguinis SK1]
gi|422857982|ref|ZP_16904632.1| ribosome recycling factor [Streptococcus sanguinis SK1057]
gi|422862075|ref|ZP_16908707.1| ribosome recycling factor [Streptococcus sanguinis SK408]
gi|422865044|ref|ZP_16911669.1| ribosome recycling factor [Streptococcus sanguinis SK1058]
gi|422878344|ref|ZP_16924810.1| ribosome recycling factor [Streptococcus sanguinis SK1059]
gi|422882700|ref|ZP_16929156.1| ribosome recycling factor [Streptococcus sanguinis SK355]
gi|422884574|ref|ZP_16931022.1| ribosome recycling factor [Streptococcus sanguinis SK49]
gi|422928198|ref|ZP_16961140.1| ribosome recycling factor [Streptococcus sanguinis ATCC 29667]
gi|422931194|ref|ZP_16964125.1| ribosome recycling factor [Streptococcus sanguinis SK340]
gi|166231520|sp|A3CPA2.1|RRF_STRSV RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|125498341|gb|ABN45007.1| Ribosome recycling factor, putative [Streptococcus sanguinis SK36]
gi|322122386|gb|EFX94097.1| ribosome recycling factor [Streptococcus sanguinis VMC66]
gi|324991441|gb|EGC23374.1| ribosome recycling factor [Streptococcus sanguinis SK353]
gi|324993795|gb|EGC25714.1| ribosome recycling factor [Streptococcus sanguinis SK405]
gi|324994886|gb|EGC26799.1| ribosome recycling factor [Streptococcus sanguinis SK678]
gi|325687319|gb|EGD29341.1| ribosome recycling factor [Streptococcus sanguinis SK72]
gi|325690743|gb|EGD32744.1| ribosome recycling factor [Streptococcus sanguinis SK115]
gi|325694795|gb|EGD36700.1| ribosome recycling factor [Streptococcus sanguinis SK150]
gi|325696189|gb|EGD38080.1| ribosome recycling factor [Streptococcus sanguinis SK160]
gi|327460953|gb|EGF07286.1| ribosome recycling factor [Streptococcus sanguinis SK1057]
gi|327463069|gb|EGF09390.1| ribosome recycling factor [Streptococcus sanguinis SK1]
gi|327474670|gb|EGF20075.1| ribosome recycling factor [Streptococcus sanguinis SK408]
gi|327490228|gb|EGF22016.1| ribosome recycling factor [Streptococcus sanguinis SK1058]
gi|332358733|gb|EGJ36556.1| ribosome recycling factor [Streptococcus sanguinis SK355]
gi|332359004|gb|EGJ36825.1| ribosome recycling factor [Streptococcus sanguinis SK49]
gi|332367318|gb|EGJ45053.1| ribosome recycling factor [Streptococcus sanguinis SK1059]
gi|339617343|gb|EGQ21969.1| ribosome recycling factor [Streptococcus sanguinis ATCC 29667]
gi|339620376|gb|EGQ24946.1| ribosome recycling factor [Streptococcus sanguinis SK340]
gi|400186280|gb|EJO20493.1| ribosome recycling factor [Streptococcus sp. AS14]
Length = 185
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 88/183 (48%), Positives = 126/183 (68%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K RM + + F S+R GR+N ++LD+I VEYYG L IA I P++
Sbjct: 3 NAIVEKAKERMTHSHQSLAREFGSIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+ P+DKSS+K IE+A+ +SDLG+TP +DG VIRL +P LT E R++L+K V K E
Sbjct: 63 RVLLVTPFDKSSIKDIERALNASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKVGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
KVA+RNIRRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKEL
Sbjct: 123 NAKVAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDEMTANKEKEL 182
Query: 274 LKV 276
L+V
Sbjct: 183 LEV 185
>gi|421879779|ref|ZP_16311236.1| Ribosome-recycling factor [Leuconostoc citreum LBAE C11]
gi|390446333|emb|CCF27356.1| Ribosome-recycling factor [Leuconostoc citreum LBAE C11]
Length = 181
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 85/178 (47%), Positives = 130/178 (73%), Gaps = 3/178 (1%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D K+RM+ D ++ S+RTGR+NP +LD+IEVEYYG+ L +A I+ P++ LLI
Sbjct: 7 DAKSRMQGAQDALQRELTSIRTGRANPHILDRIEVEYYGAMTPLNQVASISVPEARVLLI 66
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
P+DK++L+ I +AI SDLG+ P++DG ++RL +PQ+T E RK+L+K V +AE+ KV+
Sbjct: 67 TPFDKTALEEIIRAINMSDLGLNPSSDGNIVRLMIPQMTEEGRKDLAKQVKAEAEKAKVS 126
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRN+RRDA+ + ++K+K++ ED+V+ +D+QKLTD +K ID I +KEKELL +
Sbjct: 127 VRNVRRDAM---DSVKKDKEMPEDDVRKAENDIQKLTDNNIKAIDDIASEKEKELLTI 181
>gi|168483015|ref|ZP_02707967.1| ribosome recycling factor [Streptococcus pneumoniae CDC1873-00]
gi|417696135|ref|ZP_12345314.1| ribosome recycling factor [Streptococcus pneumoniae GA47368]
gi|418091689|ref|ZP_12728831.1| ribosome recycling factor [Streptococcus pneumoniae GA44452]
gi|418102665|ref|ZP_12739741.1| ribosome recycling factor [Streptococcus pneumoniae NP070]
gi|418107336|ref|ZP_12744374.1| ribosome recycling factor [Streptococcus pneumoniae GA41410]
gi|418109911|ref|ZP_12746936.1| ribosome recycling factor [Streptococcus pneumoniae GA49447]
gi|418161996|ref|ZP_12798683.1| ribosome recycling factor [Streptococcus pneumoniae GA17328]
gi|418169046|ref|ZP_12805690.1| ribosome recycling factor [Streptococcus pneumoniae GA19077]
gi|418175761|ref|ZP_12812358.1| ribosome recycling factor [Streptococcus pneumoniae GA41437]
gi|418218689|ref|ZP_12845356.1| ribosome recycling factor [Streptococcus pneumoniae NP127]
gi|418238521|ref|ZP_12865076.1| ribosome recycling factor [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|419422825|ref|ZP_13963041.1| ribosome recycling factor [Streptococcus pneumoniae GA43264]
gi|419459788|ref|ZP_13999721.1| ribosome recycling factor [Streptococcus pneumoniae GA02270]
gi|419462106|ref|ZP_14002016.1| ribosome recycling factor [Streptococcus pneumoniae GA02714]
gi|419475337|ref|ZP_14015178.1| ribosome recycling factor [Streptococcus pneumoniae GA14688]
gi|419486493|ref|ZP_14026259.1| ribosome recycling factor [Streptococcus pneumoniae GA44128]
gi|419488907|ref|ZP_14028657.1| ribosome recycling factor [Streptococcus pneumoniae GA44386]
gi|419525694|ref|ZP_14065258.1| ribosome recycling factor [Streptococcus pneumoniae GA14373]
gi|421208766|ref|ZP_15665788.1| ribosome recycling factor [Streptococcus pneumoniae 2070005]
gi|421224810|ref|ZP_15681554.1| ribosome recycling factor [Streptococcus pneumoniae 2070768]
gi|421240503|ref|ZP_15697050.1| ribosome recycling factor [Streptococcus pneumoniae 2080913]
gi|421272597|ref|ZP_15723441.1| ribosome recycling factor [Streptococcus pneumoniae SPAR55]
gi|172043555|gb|EDT51601.1| ribosome recycling factor [Streptococcus pneumoniae CDC1873-00]
gi|332201410|gb|EGJ15480.1| ribosome recycling factor [Streptococcus pneumoniae GA47368]
gi|353763789|gb|EHD44339.1| ribosome recycling factor [Streptococcus pneumoniae GA44452]
gi|353776831|gb|EHD57306.1| ribosome recycling factor [Streptococcus pneumoniae NP070]
gi|353779519|gb|EHD59983.1| ribosome recycling factor [Streptococcus pneumoniae GA41410]
gi|353782823|gb|EHD63253.1| ribosome recycling factor [Streptococcus pneumoniae GA49447]
gi|353828379|gb|EHE08519.1| ribosome recycling factor [Streptococcus pneumoniae GA17328]
gi|353834888|gb|EHE14984.1| ribosome recycling factor [Streptococcus pneumoniae GA19077]
gi|353842329|gb|EHE22376.1| ribosome recycling factor [Streptococcus pneumoniae GA41437]
gi|353875344|gb|EHE55196.1| ribosome recycling factor [Streptococcus pneumoniae NP127]
gi|353894271|gb|EHE74013.1| ribosome recycling factor [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|379532814|gb|EHY98038.1| ribosome recycling factor [Streptococcus pneumoniae GA02270]
gi|379532952|gb|EHY98175.1| ribosome recycling factor [Streptococcus pneumoniae GA02714]
gi|379559168|gb|EHZ24198.1| ribosome recycling factor [Streptococcus pneumoniae GA14373]
gi|379561675|gb|EHZ26692.1| ribosome recycling factor [Streptococcus pneumoniae GA14688]
gi|379587800|gb|EHZ52647.1| ribosome recycling factor [Streptococcus pneumoniae GA44386]
gi|379588108|gb|EHZ52954.1| ribosome recycling factor [Streptococcus pneumoniae GA44128]
gi|379588283|gb|EHZ53128.1| ribosome recycling factor [Streptococcus pneumoniae GA43264]
gi|395575722|gb|EJG36287.1| ribosome recycling factor [Streptococcus pneumoniae 2070005]
gi|395590598|gb|EJG50902.1| ribosome recycling factor [Streptococcus pneumoniae 2070768]
gi|395609085|gb|EJG69175.1| ribosome recycling factor [Streptococcus pneumoniae 2080913]
gi|395875706|gb|EJG86784.1| ribosome recycling factor [Streptococcus pneumoniae SPAR55]
Length = 185
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 90/181 (49%), Positives = 125/181 (69%), Gaps = 1/181 (0%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
IEK K RM ++ + F +R GR+N ++LD++ VEYYG L IA I P++
Sbjct: 6 IEK-AKERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LL+ P+DKSSLK IE+A+ +S+LG+TP NDG VIRL +P LT E R++L+K V K E
Sbjct: 65 LLVTPFDKSSLKDIERALNASELGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVAVRNIRRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKELL+
Sbjct: 125 KVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|350567652|ref|ZP_08936060.1| ribosome recycling factor [Propionibacterium avidum ATCC 25577]
gi|348662415|gb|EGY79078.1| ribosome recycling factor [Propionibacterium avidum ATCC 25577]
Length = 184
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 83/183 (45%), Positives = 127/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S I KD + +M +D R F ++RTGR+NPAM +KI V+YYG+P L+ +A P++
Sbjct: 2 SDIIKDAEKKMGSAVDHAREEFAAIRTGRANPAMFNKIMVDYYGAPTPLQQLASFQVPEA 61
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
++LI P+DKS + +EKA+ SDLG+ P+NDG V+R LP LT ERRKE K+ +AE
Sbjct: 62 RTVLIAPFDKSCVNEVEKAVRDSDLGVNPSNDGNVVRCVLPALTEERRKEYIKMAKAKAE 121
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
EG++AVRN+RR + +K +K+K++SED + L +L ++T +Y+++ID + K KE EL
Sbjct: 122 EGRIAVRNVRRASNDIVKKQEKDKEISEDEMTRLEKELDQVTRKYVEQIDELLKSKESEL 181
Query: 274 LKV 276
L++
Sbjct: 182 LEI 184
>gi|313885301|ref|ZP_07819052.1| ribosome recycling factor [Eremococcus coleocola ACS-139-V-Col8]
gi|312619407|gb|EFR30845.1| ribosome recycling factor [Eremococcus coleocola ACS-139-V-Col8]
Length = 185
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 84/180 (46%), Positives = 126/180 (70%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
+I K+ K RM ++++ S+R G +N ++LD+I+V YYG P L +A I P++
Sbjct: 4 TILKETKDRMAKSVEAFSRELASIRAGVANASILDRIQVTYYGVPTPLNQLASITVPEAR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
LL+ PYDKSS IEKAI+ SD+G+ P +DG+VIRL +P LT ERR+EL KVV K+ E
Sbjct: 64 MLLVTPYDKSSTTEIEKAILQSDVGINPTSDGDVIRLVIPALTKERREELVKVVGKENET 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
K+++RNIRRD + A +KL+K +L+ED+VKD +Q +TDE +K++D++ K KE E++
Sbjct: 124 AKISIRNIRRDQIDAAKKLEKNNELTEDDVKDYEKQIQAITDEKVKELDALAKAKEDEIM 183
>gi|417931337|ref|ZP_12574705.1| ribosome recycling factor [Propionibacterium acnes SK182B-JCVI]
gi|340776076|gb|EGR98126.1| ribosome recycling factor [Propionibacterium acnes SK182B-JCVI]
Length = 184
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 84/183 (45%), Positives = 126/183 (68%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S I KD + +M +D R F ++RTGR+NPAM +K+ VEYYG+P L+ +A P++
Sbjct: 2 SDIIKDAEKKMGSAVDHAREEFAAIRTGRANPAMFNKLMVEYYGTPTPLQQLASFQVPEA 61
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
++LI P+DKS + +EK I SDLG+ P+NDG V+R LP LT ERRKE K+ +AE
Sbjct: 62 RTVLIAPFDKSCVNDVEKTIRDSDLGVNPSNDGNVVRCVLPALTEERRKEYIKMAKTKAE 121
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
EG++AVRNIRR + +K +K+K++SED + L +L ++T +Y+++ID + K KE EL
Sbjct: 122 EGRIAVRNIRRASNDVVKKQEKDKEISEDEMTRLEKELDQVTRKYVEQIDELLKSKESEL 181
Query: 274 LKV 276
L++
Sbjct: 182 LEI 184
>gi|418195974|ref|ZP_12832453.1| ribosome recycling factor [Streptococcus pneumoniae GA47688]
gi|353861425|gb|EHE41362.1| ribosome recycling factor [Streptococcus pneumoniae GA47688]
Length = 173
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 85/162 (52%), Positives = 116/162 (71%)
Query: 115 FNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIV 174
F +R GR+N ++LD++ VEYYG L IA I P++ LL+ P+DKSSLK IE+A+
Sbjct: 12 FGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIERALN 71
Query: 175 SSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQ 234
+SDLG+TP NDG VIRL +P LT E R++L+K V K E KVAVRNIRRDA+ +K +
Sbjct: 72 ASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDEAKKQE 131
Query: 235 KEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
K K+++ED +K L D+QK+TD+ +K ID + KEKELL+V
Sbjct: 132 KAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLEV 173
>gi|384439930|ref|YP_005654654.1| Ribosome-recycling factor [Thermus sp. CCB_US3_UF1]
gi|359291063|gb|AEV16580.1| Ribosome-recycling factor [Thermus sp. CCB_US3_UF1]
Length = 185
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 79/176 (44%), Positives = 130/176 (73%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ ++ M+++++ + N +RTGR+NPA+L ++VEYYG+ V L IA ++ PD+ +L++
Sbjct: 9 ETRSHMQKSLEALEHNLAGLRTGRANPALLLHLKVEYYGTHVPLSQIATVSAPDARTLVV 68
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
Q +D+++LK+IEKAI SDLG+ P N G+ + + +P LT ERRKEL K AEEG++A
Sbjct: 69 QSWDQNALKAIEKAIRDSDLGLNPANKGDALYINIPPLTEERRKELVKAARHMAEEGRIA 128
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
+RN+RR+AL+ +KL KE LSED+ K +++QK+TDE++ K D++ ++KE+E+L
Sbjct: 129 IRNVRREALEKLKKLAKELHLSEDDTKRAEAEIQKITDEFIAKADALAEKKEQEIL 184
>gi|39997016|ref|NP_952967.1| ribosome recycling factor [Geobacter sulfurreducens PCA]
gi|409912445|ref|YP_006890910.1| ribosome recycling factor [Geobacter sulfurreducens KN400]
gi|47116992|sp|P61304.1|RRF_GEOSL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|39983904|gb|AAR35294.1| ribosome recycling factor [Geobacter sulfurreducens PCA]
gi|298506033|gb|ADI84756.1| ribosome recycling factor [Geobacter sulfurreducens KN400]
Length = 185
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 79/178 (44%), Positives = 132/178 (74%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D+K+ ME++++ +R + VRTGR+N +LD+I V++YG+P L +A + P+ ++ I
Sbjct: 8 DMKSHMEKSVESLRREYQKVRTGRANTGLLDEIRVDFYGNPSPLNQVATLAVPEPRTITI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP++ + IEKAI++++LG TP+NDG++IR++LP LT ERRKE+ K + K AE+ K+A
Sbjct: 68 QPWETKMIPVIEKAILNANLGFTPSNDGKLIRISLPPLTEERRKEIVKSLKKTAEDAKIA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ +KL+K+KK+SED++K ++Q +T+ Y+ K+D + KEKE+++V
Sbjct: 128 IRNIRRDAIDGLKKLEKDKKISEDDLKRAEKEVQDVTNVYVAKVDEVLAHKEKEVMEV 185
>gi|422007779|ref|ZP_16354765.1| ribosome recycling factor [Providencia rettgeri Dmel1]
gi|414097669|gb|EKT59324.1| ribosome recycling factor [Providencia rettgeri Dmel1]
Length = 185
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 87/180 (48%), Positives = 129/180 (71%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I+KD + RME++++ + + VRTGR++P++LD I VEYYGS L+ +A + DS +
Sbjct: 5 IQKDAQDRMEKSLEAFKNQISKVRTGRASPSLLDGITVEYYGSATPLRQLANVTVEDSRT 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L I +D+S +IEKAI++SDLG+ P++ G VIR+ LP LT ERRK+L KVV +AE+G
Sbjct: 65 LAISVFDRSMSPAIEKAIMASDLGLNPSSAGTVIRVPLPPLTEERRKDLIKVVRGEAEQG 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
++AVRN+RRDA + L K+K++SED+ + D+QKLTD Y+KK+D QKE EL++
Sbjct: 125 RIAVRNVRRDANDKVKALLKDKEISEDDERRSQDDIQKLTDNYIKKVDEALAQKEAELME 184
>gi|402817520|ref|ZP_10867108.1| ribosome-recycling factor Frr [Paenibacillus alvei DSM 29]
gi|402505042|gb|EJW15569.1| ribosome-recycling factor Frr [Paenibacillus alvei DSM 29]
Length = 184
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 86/182 (47%), Positives = 129/182 (70%), Gaps = 1/182 (0%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
+++K+ + RME+ I ++ ++R GR+ PA+LD+++VEYYG+ + +A I+TPD
Sbjct: 4 AVKKNAEERMEKAIAALKRELATLRAGRATPALLDRVQVEYYGAMTPVNQLANISTPDPR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
+L+IQP+DKSSL IE+AI+ SDLG+TP NDG +IRL++P LT ERR EL K K EE
Sbjct: 64 TLMIQPWDKSSLADIERAILKSDLGLTPANDGSLIRLSIPPLTEERRAELVKHTKKFGEE 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
KVA+RNIRRDA +KL+K +SED + D+QK TD+++ ++D + KEKE++
Sbjct: 124 AKVAIRNIRRDANDDIKKLEK-TDISEDESRRHQEDIQKTTDKFIAEVDKVLVVKEKEIM 182
Query: 275 KV 276
+V
Sbjct: 183 EV 184
>gi|399888416|ref|ZP_10774293.1| ribosome recycling factor [Clostridium arbusti SL206]
Length = 185
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 123/174 (70%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +TI +++ S++ GR+NPAMLD+IEVEYYG+ +L +A ++ P+ LLIQPYD
Sbjct: 12 KMSKTISVLKKELTSMKAGRANPAMLDRIEVEYYGTATALNQVANVSAPEPRILLIQPYD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
++++K IE+AI+ S+LG+ P+NDG IRL +P+LT E RK + K V K E+ KVAVR+I
Sbjct: 72 RTAIKDIERAILMSNLGLNPSNDGSAIRLVIPELTEETRKNIVKSVKKSGEDAKVAVRSI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA + L+K+ L+ED K ++QK TDEY+K ID I KEK+L+ +
Sbjct: 132 RRDANDKIKLLKKDNTLTEDETKKYEDNVQKKTDEYIKDIDKIVDAKEKDLMSI 185
>gi|422859700|ref|ZP_16906344.1| ribosome recycling factor [Streptococcus sanguinis SK330]
gi|327470583|gb|EGF16039.1| ribosome recycling factor [Streptococcus sanguinis SK330]
Length = 185
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 88/183 (48%), Positives = 126/183 (68%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K RM + + F S+R GR+N ++LD+I VEYYG L IA I P++
Sbjct: 3 NAIVEKAKERMTHSHQSLAREFGSIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+ P+DKSS+K IE+A+ +SDLG+TP +DG VIRL +P LT E R++L+K V K E
Sbjct: 63 RVLLVTPFDKSSIKDIERALNASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKVGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
KVA+RNIRRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKEL
Sbjct: 123 NAKVAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDEMTANKEKEL 182
Query: 274 LKV 276
L+V
Sbjct: 183 LEV 185
>gi|168180688|ref|ZP_02615352.1| ribosome recycling factor [Clostridium botulinum NCTC 2916]
gi|421833908|ref|ZP_16269076.1| ribosome recycling factor [Clostridium botulinum CFSAN001627]
gi|182668443|gb|EDT80422.1| ribosome recycling factor [Clostridium botulinum NCTC 2916]
gi|409744788|gb|EKN43232.1| ribosome recycling factor [Clostridium botulinum CFSAN001627]
Length = 184
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 123/174 (70%), Gaps = 1/174 (0%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +TI ++ S++ GR+NPAMLD+IE EYYGS L + I+ P++ LLIQP+D
Sbjct: 12 KMGKTIVALKRELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVLLIQPWD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K +L +IEKAI+ SDLG+ P+NDG VIRL +P+LT E RK + K V K EE KVA+R+I
Sbjct: 72 KGALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAKVAIRSI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD + L+K+ +SED++K D+QK TD+Y+K+IDSI KEKE+L +
Sbjct: 132 RRDCNDDVKNLKKD-DVSEDDIKKAEDDIQKKTDKYIKEIDSIISAKEKEILSI 184
>gi|187778975|ref|ZP_02995448.1| hypothetical protein CLOSPO_02570 [Clostridium sporogenes ATCC
15579]
gi|424827570|ref|ZP_18252357.1| ribosome recycling factor [Clostridium sporogenes PA 3679]
gi|187772600|gb|EDU36402.1| ribosome recycling factor [Clostridium sporogenes ATCC 15579]
gi|365980010|gb|EHN16051.1| ribosome recycling factor [Clostridium sporogenes PA 3679]
Length = 184
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 124/174 (71%), Gaps = 1/174 (0%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +TI ++ S++ GR+NPAMLD+IE EYYGS L + I+ P++ LLIQP+D
Sbjct: 12 KMGKTIVALKRELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVLLIQPWD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS+L +IEKAI+ SDLG+ P+NDG VIRL +P+LT E RK + K V K EE KVA+R+I
Sbjct: 72 KSALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAKVAIRSI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD + L+K+ +SED++K D+QK TD+Y+K++DSI KEKE+L +
Sbjct: 132 RRDCNDDVKNLKKD-DVSEDDIKKAEDDIQKKTDKYIKEVDSIISVKEKEILSI 184
>gi|154484746|ref|ZP_02027194.1| hypothetical protein EUBVEN_02463 [Eubacterium ventriosum ATCC
27560]
gi|149734594|gb|EDM50511.1| ribosome recycling factor [Eubacterium ventriosum ATCC 27560]
Length = 184
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 122/174 (70%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+ME+++ + + ++R GR+NP +LDKI+++YYG+P L+ + ++ P++ + IQP+D
Sbjct: 11 KMEKSLANLGEEYATIRAGRANPHILDKIKIDYYGTPTPLQQVGNVSVPEARMICIQPWD 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
S LK IE AI SD+G+ P NDG+VIRL P+LT +RRKEL K V K+ E K+A+RNI
Sbjct: 71 ASILKDIEHAINMSDVGINPTNDGKVIRLVFPELTEDRRKELVKDVKKKGENAKIAIRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA+ A +K KE +SED VK D+QK TDEY+KKID ++K E++ V
Sbjct: 131 RRDAIDAIKKKGKEDGISEDEVKGYQDDVQKKTDEYIKKIDVAIEEKSNEIMTV 184
>gi|282855676|ref|ZP_06264985.1| ribosome recycling factor [Pyramidobacter piscolens W5455]
gi|282586476|gb|EFB91735.1| ribosome recycling factor [Pyramidobacter piscolens W5455]
Length = 182
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 129/172 (75%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M + ++ + + F +RTGR++P +++ ++V+YYGS +K +A I P++ L+I P+D
Sbjct: 9 KMAKVLEHLDSEFQGIRTGRAHPGLVEGVKVDYYGSLTPIKQLANITVPEARMLIIAPFD 68
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K ++K IEKAI+++++G+TPN DG IRL +P+LT ERRKE K+ +K AEE K+A+RNI
Sbjct: 69 KGAVKLIEKAILAANIGLTPNVDGSNIRLVVPELTGERRKEFVKMASKAAEEAKIALRNI 128
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
RRDA AY+K +K +++ED++K + D QK+TD+++ ++D +K+KEKE+L
Sbjct: 129 RRDANDAYKKQEKASEITEDDLKKMLDDAQKITDKFIARVDDEFKKKEKEIL 180
>gi|417936629|ref|ZP_12579937.1| ribosome recycling factor [Streptococcus infantis X]
gi|417938118|ref|ZP_12581416.1| ribosome recycling factor [Streptococcus infantis SK970]
gi|343391208|gb|EGV03783.1| ribosome recycling factor [Streptococcus infantis SK970]
gi|343400279|gb|EGV12798.1| ribosome recycling factor [Streptococcus infantis X]
Length = 185
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 88/183 (48%), Positives = 125/183 (68%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K RM ++ + F +R GR+N ++LD+I VEYYG L IA I P++
Sbjct: 3 NAIVEKAKERMTQSHHSLAREFGGIRAGRANASLLDRITVEYYGVETPLNQIASITIPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K E
Sbjct: 63 RVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
KVA+RNIRRDA+ +K +K K+++ED +K L D+QK TD+ +K ID + KEKE+
Sbjct: 123 NAKVAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKATDDAVKHIDDMTANKEKEI 182
Query: 274 LKV 276
L+V
Sbjct: 183 LEV 185
>gi|24215994|ref|NP_713475.1| ribosome recycling factor [Leptospira interrogans serovar Lai str.
56601]
gi|45656744|ref|YP_000830.1| ribosome recycling factor [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|386075082|ref|YP_005989401.1| ribosome recycling factor [Leptospira interrogans serovar Lai str.
IPAV]
gi|417760664|ref|ZP_12408681.1| ribosome recycling factor [Leptospira interrogans str. 2002000624]
gi|417764373|ref|ZP_12412340.1| ribosome recycling factor [Leptospira interrogans serovar Bulgarica
str. Mallika]
gi|417774913|ref|ZP_12422775.1| ribosome recycling factor [Leptospira interrogans str. 2002000621]
gi|417784181|ref|ZP_12431890.1| ribosome recycling factor [Leptospira interrogans str. C10069]
gi|418668199|ref|ZP_13229602.1| ribosome recycling factor [Leptospira interrogans serovar Pyrogenes
str. 2006006960]
gi|418674551|ref|ZP_13235853.1| ribosome recycling factor [Leptospira interrogans str. 2002000623]
gi|418690550|ref|ZP_13251662.1| ribosome recycling factor [Leptospira interrogans str. FPW2026]
gi|418694863|ref|ZP_13255891.1| ribosome recycling factor [Leptospira kirschneri str. H1]
gi|418701716|ref|ZP_13262638.1| ribosome recycling factor [Leptospira interrogans serovar Bataviae
str. L1111]
gi|418705768|ref|ZP_13266627.1| ribosome recycling factor [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|418707324|ref|ZP_13268150.1| ribosome recycling factor [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|418727628|ref|ZP_13286216.1| ribosome recycling factor [Leptospira interrogans str. UI 12621]
gi|421084309|ref|ZP_15545172.1| ribosome recycling factor [Leptospira santarosai str. HAI1594]
gi|421102959|ref|ZP_15563561.1| ribosome recycling factor [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|421109231|ref|ZP_15569755.1| ribosome recycling factor [Leptospira kirschneri str. H2]
gi|421121325|ref|ZP_15581622.1| ribosome recycling factor [Leptospira interrogans str. Brem 329]
gi|421126954|ref|ZP_15587178.1| ribosome recycling factor [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|421136047|ref|ZP_15596158.1| ribosome recycling factor [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|34924967|sp|Q8F143.1|RRF_LEPIN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|59798561|sp|Q72U11.1|RRF_LEPIC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|24197218|gb|AAN50493.1|AE011490_8 ribosome recycling factor [Leptospira interrogans serovar Lai str.
56601]
gi|45599980|gb|AAS69467.1| ribosome recycling factor [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|353458873|gb|AER03418.1| ribosome recycling factor [Leptospira interrogans serovar Lai str.
IPAV]
gi|400352817|gb|EJP04993.1| ribosome recycling factor [Leptospira interrogans serovar Bulgarica
str. Mallika]
gi|400360300|gb|EJP16276.1| ribosome recycling factor [Leptospira interrogans str. FPW2026]
gi|409943584|gb|EKN89184.1| ribosome recycling factor [Leptospira interrogans str. 2002000624]
gi|409952645|gb|EKO07155.1| ribosome recycling factor [Leptospira interrogans str. C10069]
gi|409957333|gb|EKO16246.1| ribosome recycling factor [Leptospira kirschneri str. H1]
gi|409958986|gb|EKO22763.1| ribosome recycling factor [Leptospira interrogans str. UI 12621]
gi|410005751|gb|EKO59538.1| ribosome recycling factor [Leptospira kirschneri str. H2]
gi|410019781|gb|EKO86595.1| ribosome recycling factor [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410345759|gb|EKO96829.1| ribosome recycling factor [Leptospira interrogans str. Brem 329]
gi|410367274|gb|EKP22660.1| ribosome recycling factor [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410433209|gb|EKP77557.1| ribosome recycling factor [Leptospira santarosai str. HAI1594]
gi|410435044|gb|EKP84176.1| ribosome recycling factor [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|410575254|gb|EKQ38274.1| ribosome recycling factor [Leptospira interrogans str. 2002000621]
gi|410578442|gb|EKQ46301.1| ribosome recycling factor [Leptospira interrogans str. 2002000623]
gi|410756056|gb|EKR17683.1| ribosome recycling factor [Leptospira interrogans serovar Pyrogenes
str. 2006006960]
gi|410759280|gb|EKR25495.1| ribosome recycling factor [Leptospira interrogans serovar Bataviae
str. L1111]
gi|410764600|gb|EKR35308.1| ribosome recycling factor [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|410772371|gb|EKR47559.1| ribosome recycling factor [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|455790879|gb|EMF42721.1| ribosome recycling factor [Leptospira interrogans serovar Lora str.
TE 1992]
gi|456823069|gb|EMF71539.1| ribosome recycling factor [Leptospira interrogans serovar Canicola
str. LT1962]
gi|456968808|gb|EMG09948.1| ribosome recycling factor [Leptospira interrogans serovar
Grippotyphosa str. LT2186]
gi|456984585|gb|EMG20607.1| ribosome recycling factor [Leptospira interrogans serovar
Copenhageni str. LT2050]
Length = 184
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 129/178 (72%), Gaps = 4/178 (2%)
Query: 100 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQ 159
+K +M++TID+V+ +F ++RTGR+NP++++ I V+YYG+ + + I+ P+ L+I
Sbjct: 10 MKTKMDKTIDLVKKDFGTIRTGRANPSLVEDIRVDYYGNQTPINQLGNISVPEPRMLVIS 69
Query: 160 PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAV 219
PYDK +K IEKAI +S LG+ P NDG VIR+ +P+LT ERRKEL+KVV ++EE KVA+
Sbjct: 70 PYDKGIMKDIEKAIQTSGLGLQPTNDGVVIRIVIPELTGERRKELAKVVKSKSEEKKVAI 129
Query: 220 RNIRRDALKAYEKLQKE-KKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RNIRRDA+ E L+K + +S+D +K + +QK+TD Y+ KI ++ +KEKE+ +
Sbjct: 130 RNIRRDAM---EDLKKHTEGMSQDEIKSVQDQIQKITDSYIDKISALTAEKEKEITTI 184
>gi|336427161|ref|ZP_08607165.1| ribosome recycling factor [Lachnospiraceae bacterium 3_1_57FAA_CT1]
gi|336010014|gb|EGN40001.1| ribosome recycling factor [Lachnospiraceae bacterium 3_1_57FAA_CT1]
Length = 183
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 90/174 (51%), Positives = 128/174 (73%), Gaps = 1/174 (0%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M + D + +F ++R GR+NP +LDK++V YYG+P ++ + I P+ + I P++
Sbjct: 11 KMTKAYDFLAADFATIRAGRANPHILDKLKVNYYGTPTPIQQVGNITVPEPRMIQISPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS +K IEKAI++SD+G+TP+NDG VIRL +P+LT ERRKEL K V K+ EEGKVAVRNI
Sbjct: 71 KSLIKEIEKAIMASDVGITPSNDGNVIRLVIPELTEERRKELVKEVKKKGEEGKVAVRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD ++KL KE +SED +K+L S LQKLTD+Y+K ID + ++K KE+L V
Sbjct: 131 RRDGNDYFKKLAKE-DVSEDEIKELESSLQKLTDKYVKDIDKLVEEKSKEILTV 183
>gi|268590529|ref|ZP_06124750.1| ribosome recycling factor [Providencia rettgeri DSM 1131]
gi|291314115|gb|EFE54568.1| ribosome recycling factor [Providencia rettgeri DSM 1131]
Length = 185
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 87/180 (48%), Positives = 129/180 (71%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I+KD + RME++++ ++ + VRTGR++P++LD I VEYYGS L+ +A + DS +
Sbjct: 5 IQKDAQDRMEKSLEAFKSQISKVRTGRASPSLLDGITVEYYGSATPLRQLANVTVEDSRT 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L I +D+S +IEKAI++SDLG+ P++ G VIR+ LP LT ERRK+L KVV AE+G
Sbjct: 65 LAISVFDRSMSPAIEKAIMASDLGLNPSSAGTVIRVPLPPLTEERRKDLIKVVRGDAEQG 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
++AVRN+RRDA + L K+K++SED+ + D+QKLTD Y+KK+D QKE EL++
Sbjct: 125 RIAVRNVRRDANDKVKALLKDKEISEDDERRSQDDIQKLTDSYIKKVDEALAQKEAELME 184
>gi|116749216|ref|YP_845903.1| ribosome recycling factor [Syntrophobacter fumaroxidans MPOB]
gi|166231522|sp|A0LJ66.1|RRF_SYNFM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|116698280|gb|ABK17468.1| ribosome recycling factor [Syntrophobacter fumaroxidans MPOB]
Length = 185
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 82/178 (46%), Positives = 130/178 (73%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + RM + +D + T++ +RTGR++ +++D I EYYG+P +L +A I P+ +++I
Sbjct: 8 DARDRMSKALDNLETDYKRLRTGRASVSLVDGIRAEYYGTPTALNQLATITIPEPRTIMI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D S + IEK+I+ S+LG+TP +DG+VIR+ +P LT++RR+EL KVV K +EE KVA
Sbjct: 68 QPWDTSVIGEIEKSILKSELGLTPMSDGKVIRINIPVLTADRRRELVKVVKKMSEESKVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRNIRRD + + L+KEK++SED + Q++TD+++KKID +Y KEKE+L++
Sbjct: 128 VRNIRRDVNEMIKDLKKEKEISEDEQFKAQEETQRITDDFIKKIDVVYSAKEKEILEI 185
>gi|422870480|ref|ZP_16916973.1| ribosome recycling factor [Streptococcus sanguinis SK1087]
gi|328946695|gb|EGG40833.1| ribosome recycling factor [Streptococcus sanguinis SK1087]
Length = 185
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 88/183 (48%), Positives = 126/183 (68%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K RM + + F S+R GR+N ++LD+I VEYYG L IA I P++
Sbjct: 3 NAIVEKAKERMTHSHQSLAREFGSIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+ P+DKSS+K IE+A+ +SDLG+TP +DG VIRL +P LT E R++L+K V K E
Sbjct: 63 RVLLVTPFDKSSIKDIERALNASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKVGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
KVA+RNIRRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKEL
Sbjct: 123 NAKVAIRNIRRDAMDDAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDEMTANKEKEL 182
Query: 274 LKV 276
L+V
Sbjct: 183 LEV 185
>gi|357238187|ref|ZP_09125524.1| ribosome recycling factor [Streptococcus ictaluri 707-05]
gi|356752910|gb|EHI70031.1| ribosome recycling factor [Streptococcus ictaluri 707-05]
Length = 185
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 84/162 (51%), Positives = 118/162 (72%)
Query: 115 FNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIV 174
+ S+R GR+N ++LD+I+VEYYG+P L +A I P++ LLI P+DKSS+K IE+A+
Sbjct: 24 YASIRAGRANASLLDRIKVEYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERALN 83
Query: 175 SSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQ 234
+SDLG+TP NDG VIRL +P LT E RKEL+K V K E K+++RNIRRDA+ +K +
Sbjct: 84 ASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKISIRNIRRDAMDDAKKQE 143
Query: 235 KEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
K K+++ED +K L D+QK TD+ +K+ID + KE ELL V
Sbjct: 144 KAKEITEDELKTLEKDIQKATDDAIKEIDKMTADKETELLSV 185
>gi|384431047|ref|YP_005640407.1| Ribosome-recycling factor [Thermus thermophilus SG0.5JP17-16]
gi|333966515|gb|AEG33280.1| Ribosome-recycling factor [Thermus thermophilus SG0.5JP17-16]
Length = 185
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 84/190 (44%), Positives = 136/190 (71%), Gaps = 7/190 (3%)
Query: 85 TIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKS 144
T++E+ AE ++ M+++++++ N +RTGR+NPA+L ++VEYYG+ V L
Sbjct: 2 TLKELYAE-------TRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGTHVPLNQ 54
Query: 145 IAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKEL 204
IA + PD+ +L++Q +D+++LK+IEKAI SDLG+ P+N G+ + + +P LT ERRK+L
Sbjct: 55 IATVTAPDARTLVVQSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDL 114
Query: 205 SKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 264
+ V + AEEG+VA+RNIRR+AL +KL KE LSED K +++QK+TDE++ K D
Sbjct: 115 VRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQ 174
Query: 265 IYKQKEKELL 274
+ ++KE+E+L
Sbjct: 175 LAEKKEQEIL 184
>gi|332307502|ref|YP_004435353.1| ribosome recycling factor [Glaciecola sp. 4H-3-7+YE-5]
gi|410642035|ref|ZP_11352553.1| ribosome recycling factor [Glaciecola chathamensis S18K6]
gi|410647253|ref|ZP_11357688.1| ribosome recycling factor [Glaciecola agarilytica NO2]
gi|332174831|gb|AEE24085.1| ribosome recycling factor [Glaciecola sp. 4H-3-7+YE-5]
gi|410133108|dbj|GAC06087.1| ribosome recycling factor [Glaciecola agarilytica NO2]
gi|410138352|dbj|GAC10740.1| ribosome recycling factor [Glaciecola chathamensis S18K6]
Length = 185
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 87/181 (48%), Positives = 127/181 (70%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I D + RME+++ +R F +RTGR++P++LD I V YYG+P LK +A + DS +
Sbjct: 5 INVDARQRMEKSVVALRGQFTKIRTGRAHPSLLDSIMVPYYGAPTPLKQLANVIAEDSRT 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L + +DKS+ +++EKAI+ SDLG+ P + G VIR+ +P LT ERRK+L +VV +AE G
Sbjct: 65 LALTVFDKSAAQAVEKAIMQSDLGLNPMSAGTVIRIPMPALTEERRKDLIRVVRNEAEGG 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
+VAVRNIRRDA ++L KEK++SED+ +QKLTDE++K+ID I KE EL++
Sbjct: 125 RVAVRNIRRDANGDIKELLKEKEISEDDAHRGEDAIQKLTDEFVKQIDEILAAKETELME 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|297588384|ref|ZP_06947027.1| ribosome recycling factor [Finegoldia magna ATCC 53516]
gi|297573757|gb|EFH92478.1| ribosome recycling factor [Finegoldia magna ATCC 53516]
Length = 185
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 86/181 (47%), Positives = 130/181 (71%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I KD++A+ ++T+ +R +VR GR+NP++LD I V+YYG+ LK +A I+ P++
Sbjct: 5 ILKDMEAKADKTLHALREELKTVRAGRANPSILDNIMVDYYGTSTPLKQVATISAPEARL 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L IQP+DKS +K IEK I +S+LG+TP+NDG +IRL PQLT +RRKEL+KVV + E+
Sbjct: 65 LTIQPWDKSIMKEIEKQIQASNLGITPSNDGSIIRLPFPQLTEDRRKELTKVVKEYGEKS 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KV +R+IRRD + +K++K ++SED + L D+Q LTD+ K+ID+I KE EL++
Sbjct: 125 KVTIRSIRRDFVDDAKKMEKNAEISEDELHVLLDDIQSLTDKLTKEIDNIVTDKETELME 184
Query: 276 V 276
+
Sbjct: 185 I 185
>gi|253988128|ref|YP_003039484.1| ribosome recycling factor (ribosome-releasing factor) (rrf)
[Photorhabdus asymbiotica]
gi|253779578|emb|CAQ82739.1| ribosome recycling factor (ribosome-releasing factor) (rrf)
[Photorhabdus asymbiotica]
Length = 185
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 85/182 (46%), Positives = 133/182 (73%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I+KD + RME++++ ++ + VRTGR++P++LD I VEYYG+P L+ IA + D+
Sbjct: 3 NEIKKDAQDRMEKSVEALKNQISKVRTGRASPSLLDGITVEYYGAPTPLRQIANVTAEDA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L I +D+S +IEKAI+SSDLG+ P++ G +IR+ LP LT ERRK+L KVV +AE
Sbjct: 63 RTLAITVFDRSMTPAIEKAIMSSDLGLNPSSAGTIIRVPLPPLTEERRKDLIKVVRGEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+G+V+VRNIRRDA + L K+K++SED+ + ++QKLTD ++KK+D +KE+EL
Sbjct: 123 QGRVSVRNIRRDANDKIKALLKDKEISEDDERRAQDEIQKLTDNFIKKVDEALAKKEEEL 182
Query: 274 LK 275
++
Sbjct: 183 ME 184
>gi|85859433|ref|YP_461635.1| ribosome recycling factor [Syntrophus aciditrophicus SB]
gi|123516615|sp|Q2LTQ4.1|RRF_SYNAS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|85722524|gb|ABC77467.1| ribosome recycling factor [Syntrophus aciditrophicus SB]
Length = 185
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 85/184 (46%), Positives = 129/184 (70%)
Query: 93 KSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPD 152
K + ++K ME+ + + +FN VRTGR++ ++LD I+ +YYG+P L +A ++ P+
Sbjct: 2 KDMVFDELKQNMEKGLQALEKSFNKVRTGRASISLLDGIKADYYGTPTPLNQVATLSVPE 61
Query: 153 SSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQA 212
S +LI P+D S+L +IEKAI SDLG+ PNNDG+VIR+++P LT RRKEL KVV K A
Sbjct: 62 SRQILISPWDTSALNAIEKAIQKSDLGLVPNNDGKVIRISIPPLTEARRKELVKVVRKMA 121
Query: 213 EEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKE 272
EE KV +RN RRDA + ++ ++K +SED + D +QK+TD Y++K + I QKEKE
Sbjct: 122 EECKVKLRNARRDANEEFKSMKKNNDISEDQMHDYQDQVQKMTDSYIEKSEDILVQKEKE 181
Query: 273 LLKV 276
++++
Sbjct: 182 IMEI 185
>gi|260913177|ref|ZP_05919659.1| ribosome recycling factor [Pasteurella dagmatis ATCC 43325]
gi|260632764|gb|EEX50933.1| ribosome recycling factor [Pasteurella dagmatis ATCC 43325]
Length = 185
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 82/181 (45%), Positives = 131/181 (72%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I+KD +ARME++++ + + VRTGR+ P++LD I+VEYYGSP L+ +A + D+
Sbjct: 3 NEIKKDTQARMEKSLETFKNHIAKVRTGRAQPSLLDGIQVEYYGSPTPLRQLANVVAEDA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L + +D+S + ++EKAI++SDLG+ P++ G IR+ LP LT ERR++L K+V +AE
Sbjct: 63 RTLAVTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+GK+AVRN+RRDA + L K+K++SED + ++QK+TD Y+KK+D + KEKEL
Sbjct: 123 QGKIAVRNVRRDANDQIKALLKDKEISEDEERKAQDEIQKITDLYVKKVDEVLADKEKEL 182
Query: 274 L 274
+
Sbjct: 183 M 183
>gi|325681407|ref|ZP_08160933.1| ribosome recycling factor [Ruminococcus albus 8]
gi|324106897|gb|EGC01187.1| ribosome recycling factor [Ruminococcus albus 8]
Length = 184
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 86/183 (46%), Positives = 136/183 (74%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I+ K +ME++++++ ++F ++R GR+NPA+LDK++VEYYG+P + +A I+ ++
Sbjct: 2 NEIKNKAKEKMEKSVNVMLSDFAAIRAGRANPAVLDKVKVEYYGAPTPVNQMAAISVAEA 61
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
L+I P+DKS+LKSIEKAI +SD+G+ P NDG+ IRL PQLT +RRKE+ K V K E
Sbjct: 62 RILVITPWDKSTLKSIEKAIQASDIGINPQNDGQTIRLIFPQLTEDRRKEIVKDVKKGGE 121
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+ KVAVR+IRRDA++ + +K +++ED KD +QKLTD+++K+ID+ +KEKE+
Sbjct: 122 DCKVAVRSIRRDAIEKIKAKKKNNEITEDEQKDGEEAIQKLTDKFVKEIDAHVAEKEKEI 181
Query: 274 LKV 276
L +
Sbjct: 182 LSI 184
>gi|319939517|ref|ZP_08013877.1| ribosome-recycling factor [Streptococcus anginosus 1_2_62CV]
gi|319811503|gb|EFW07798.1| ribosome-recycling factor [Streptococcus anginosus 1_2_62CV]
Length = 185
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 89/185 (48%), Positives = 128/185 (69%), Gaps = 1/185 (0%)
Query: 92 EKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTP 151
E + +EK K RM ++ + F S+R GR+N ++LD+I VEYYG L IA I P
Sbjct: 2 ENAIVEK-AKERMTQSHQSLAREFGSIRAGRANASLLDRISVEYYGVETPLNQIASITIP 60
Query: 152 DSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 211
++ LL+ P+DKSS+K IE+A+ +SDLG+TP +DG VIRL +P LT E R++L+K V K
Sbjct: 61 EARVLLVTPFDKSSIKDIERALNASDLGITPASDGTVIRLVIPALTEETRRDLAKEVKKV 120
Query: 212 AEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEK 271
E K+A+RNIRRDA+ +K +K K+++ED +K L D+QK+TDE +K ID + KEK
Sbjct: 121 GENAKIAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDEAVKHIDDMTASKEK 180
Query: 272 ELLKV 276
EL++V
Sbjct: 181 ELIEV 185
>gi|358063656|ref|ZP_09150263.1| ribosome-recycling factor [Clostridium hathewayi WAL-18680]
gi|356698153|gb|EHI59706.1| ribosome-recycling factor [Clostridium hathewayi WAL-18680]
Length = 184
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 124/174 (71%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +++D +++ + S+R GR+NP +LDKI+V+YYG+P L+ + + P++ + IQP++
Sbjct: 11 KMNKSLDALQSEYVSIRAGRANPHVLDKIKVDYYGTPTPLQQVGNVTVPEARMIQIQPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS L+ IEKAI SDLG+ P NDG VIRL P+LT ERRKEL+K V K+ E KVA+RNI
Sbjct: 71 KSLLREIEKAIQMSDLGINPTNDGNVIRLVFPELTEERRKELAKDVKKKGEAAKVAMRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA A +KL+K ++SED D +QKLTD+ ++K+D + K KE++ V
Sbjct: 131 RRDANDAIKKLEKSGEISEDERDDAEEQIQKLTDKMVEKVDKAVEDKTKEIMTV 184
>gi|335047128|ref|ZP_08540149.1| ribosome recycling factor [Parvimonas sp. oral taxon 110 str.
F0139]
gi|333760936|gb|EGL38491.1| ribosome recycling factor [Parvimonas sp. oral taxon 110 str.
F0139]
Length = 185
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 130/178 (73%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+++ +M ++I+ T +VR GR+NP +LD+ V+YYG+ +K +A I+ P++ L+I
Sbjct: 8 ELERKMSKSIESYETELTTVRAGRANPTILDQFTVDYYGTETPIKQVASISVPEARLLVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D S + IEK I++S+LG+TP+NDG+VIRL P LT +RRKEL KVV E K+A
Sbjct: 68 QPWDASLITPIEKVILASNLGITPSNDGKVIRLPFPALTEDRRKELVKVVKGYGENAKIA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RN+RRD L +K++K+K++SED ++ ++QK+TD+++KK++ I K KEKEL+++
Sbjct: 128 IRNLRRDGLDKLKKIEKDKEISEDELRQAEEEVQKVTDKFIKKVEDITKSKEKELMEI 185
>gi|184201268|ref|YP_001855475.1| ribosome recycling factor [Kocuria rhizophila DC2201]
gi|238689218|sp|B2GKT3.1|RRF_KOCRD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|183581498|dbj|BAG29969.1| ribosome recycling factor [Kocuria rhizophila DC2201]
Length = 185
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 83/181 (45%), Positives = 122/181 (67%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S + D RM + +D +T+F++VRTGR+NPA+ + V YYG+P L+ +A TP++
Sbjct: 3 SDVLSDATTRMGKAVDAAKTDFSTVRTGRANPALFSSLLVAYYGTPTPLQQLASFQTPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+LLI PYD+S+L IEKA+ SD+G P NDG VIR+ +P+LT ERRKE K+V +AE
Sbjct: 63 RTLLITPYDRSALNDIEKALRDSDIGANPANDGNVIRVVMPELTEERRKEYVKIVHGKAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+ +V+VRN+RR A +A EKL K+ + ED+ K DL T +++ ++D + K KE EL
Sbjct: 123 DARVSVRNVRRHAKEAIEKLVKDGDVGEDDGKRGEKDLDAATKKHIDQVDELLKNKEAEL 182
Query: 274 L 274
L
Sbjct: 183 L 183
>gi|452995278|emb|CCQ93045.1| ribosome recycling factor [Clostridium ultunense Esp]
Length = 185
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 84/181 (46%), Positives = 133/181 (73%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
+ K+ + +M++T+++ + S+R GR+NPA+LD+I ++YYG+ LK +A I+ P+
Sbjct: 5 VHKESEEKMKKTVEVYKEELKSIRAGRANPALLDQISIDYYGTDTPLKQLASISAPEPRL 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L+IQP+D + + IEK I+ SDLG+ P+NDG++IRL +P LT ERRKEL KVV K AE
Sbjct: 65 LIIQPWDINLISVIEKEILKSDLGLNPSNDGKLIRLPIPLLTEERRKELVKVVRKSAESA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
K+++RNIRR+A +K++K+K LSED+ K ++ QK+TDEY+ +ID + +KE+ELL+
Sbjct: 125 KISIRNIRREANDIIKKMEKDKTLSEDDRKAAENETQKITDEYIDEIDDLTNKKEEELLE 184
Query: 276 V 276
+
Sbjct: 185 I 185
>gi|420154987|ref|ZP_14661858.1| ribosome recycling factor [Clostridium sp. MSTE9]
gi|394759829|gb|EJF42492.1| ribosome recycling factor [Clostridium sp. MSTE9]
Length = 184
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 134/174 (77%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++T+ ++ + ++R GR+NPA+LDKI V+YYG+P ++ +A I+ ++ L IQP+D
Sbjct: 11 KMKKTLSVLTNEYTTIRAGRANPAVLDKIMVDYYGTPTAVNQLAAISVSEARLLTIQPWD 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
SS+++IEKAI+SS+LG+ P +DG+VIRL PQLT ERR++++K +AK +EE KVAVR+I
Sbjct: 71 ASSVRAIEKAILSSELGINPQSDGKVIRLMFPQLTEERRRDITKDIAKMSEEAKVAVRSI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA++ + +K +++ED++K Q LTD+Y K+ID ++++K+KE++++
Sbjct: 131 RRDAIEKLKAKKKTAEITEDDLKQGEKKTQDLTDKYCKEIDILFEKKQKEIMEI 184
>gi|374298555|ref|YP_005050194.1| Ribosome-recycling factor [Desulfovibrio africanus str. Walvis Bay]
gi|332551491|gb|EGJ48535.1| Ribosome-recycling factor [Desulfovibrio africanus str. Walvis Bay]
Length = 184
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 81/179 (45%), Positives = 129/179 (72%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+++ RM++ ++ ++ F +RTGR++ +L+ I ++YYGS + +A + TPDS ++
Sbjct: 6 KELETRMQKVVENLKREFGRLRTGRASTTLLEGINIDYYGSSTPISQVASVATPDSRTIT 65
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D+ S IEKAI++SDLG+ P NDG++IR++LP LT ERRK+L K+ K EEGKV
Sbjct: 66 IQPWDRGSFGPIEKAIMTSDLGLNPVNDGKIIRISLPPLTEERRKDLVKLGKKYTEEGKV 125
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
AVRNIRRD +KL+K+K ++ED+++ ++QKLTD+Y+ K D KEKE++++
Sbjct: 126 AVRNIRRDGNDTLKKLEKDKTITEDDLRRGQDEIQKLTDKYVAKCDEALAVKEKEIMEI 184
>gi|323339424|ref|ZP_08079706.1| ribosome recycling factor [Lactobacillus ruminis ATCC 25644]
gi|323093135|gb|EFZ35725.1| ribosome recycling factor [Lactobacillus ruminis ATCC 25644]
Length = 240
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 84/172 (48%), Positives = 121/172 (70%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++ ++ +R G +N ++L+++ VEYYG+P L +AQI+ P++ LL+ PYD
Sbjct: 67 KMQKAEAALQHELGGIRAGVANASLLNRVMVEYYGAPTPLNQMAQISVPEARVLLVTPYD 126
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KSSLK +E A+++SDLG+TP NDG IRL +PQLT ERRKEL+K V AE+GKVAVRN+
Sbjct: 127 KSSLKDVEHALLASDLGLTPMNDGSAIRLVIPQLTEERRKELAKQVRAAAEKGKVAVRNV 186
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
RR+ + + +K QK +SED + DL + QK+TD +K ID I KEKE+L
Sbjct: 187 RREMMDSLKKAQKNGDMSEDVLHDLEDEAQKITDASIKNIDGITAAKEKEIL 238
>gi|335030867|ref|ZP_08524341.1| ribosome recycling factor [Streptococcus anginosus SK52 = DSM
20563]
gi|333770930|gb|EGL47908.1| ribosome recycling factor [Streptococcus anginosus SK52 = DSM
20563]
Length = 185
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 127/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K RM ++ + F S+R GR+N ++LD+I VEYYG L IA I P++
Sbjct: 3 NAIVEKAKERMTQSHQSLAREFGSIRAGRANASLLDRISVEYYGVETPLNQIASITIPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+ P+DKSS+K IE+A+ +SDLG+TP +DG VIRL +P LT E R++L+K V K E
Sbjct: 63 RVLLVTPFDKSSIKDIERALNASDLGITPASDGTVIRLVIPALTEETRRDLAKEVKKVGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
K+A+RNIRRDA+ +K +K K+++ED +K L D+QK+TDE +K ID + KEKEL
Sbjct: 123 NAKIAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDEAVKHIDEMTASKEKEL 182
Query: 274 LKV 276
++V
Sbjct: 183 IEV 185
>gi|285018794|ref|YP_003376505.1| ribosome recycling factor (rrf) protein [Xanthomonas albilineans
GPE PC73]
gi|283474012|emb|CBA16513.1| probable ribosome recycling factor (rrf) protein [Xanthomonas
albilineans GPE PC73]
Length = 185
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 85/183 (46%), Positives = 128/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I++D + RM ++ID +R VRTGR++ A+++ ++V YYGS + L +A + D+
Sbjct: 3 NDIKQDAQTRMAKSIDALRHTLIKVRTGRASTALVEHLKVNYYGSEMPLSQVASVAVADA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
SL I P++K + ++EKAI++SDLG+TPN G IRL LP LT ERR+ELSKVV + E
Sbjct: 63 RSLTITPWEKQMVSAVEKAILASDLGLTPNTAGTTIRLNLPALTEERRRELSKVVHGEGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+ KVA+RNIRRDA + + L K+KK++ED + D+QKLTD+ +K +D + K KE+EL
Sbjct: 123 DTKVAIRNIRRDANQHIKDLLKDKKVTEDEARGSEDDIQKLTDKAIKDVDEVVKSKEQEL 182
Query: 274 LKV 276
+ V
Sbjct: 183 MAV 185
>gi|20807853|ref|NP_623024.1| ribosome recycling factor [Thermoanaerobacter tengcongensis MB4]
gi|254479463|ref|ZP_05092790.1| ribosome recycling factor [Carboxydibrachium pacificum DSM 12653]
gi|22001937|sp|Q8RA24.1|RRF_THETN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|20516416|gb|AAM24628.1| Ribosome recycling factor [Thermoanaerobacter tengcongensis MB4]
gi|214034606|gb|EEB75353.1| ribosome recycling factor [Carboxydibrachium pacificum DSM 12653]
Length = 184
Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 86/179 (48%), Positives = 133/179 (74%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
KD + RM++T++++++ ++R GR+NPA+LD+I V YYG+P L +A I P+ L+
Sbjct: 6 KDSEERMKKTLNVLKSELAAIRAGRANPALLDRITVNYYGTPTPLNRLATITAPEPRVLV 65
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
+QP+D S + IEKAI SDLG+ P +DG+V+RL LP+LT ERRKEL K+V K+AEE ++
Sbjct: 66 VQPWDVSQIGEIEKAIQKSDLGINPVSDGKVLRLVLPELTEERRKELVKLVHKKAEEARI 125
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
AVR IRRDA +K++K+ ++SED K ++QKLTD+Y+K+ID + + KEKE++++
Sbjct: 126 AVRQIRRDANDLVKKMEKDGEISEDERKRREEEIQKLTDKYIKEIDKMVEAKEKEIMEI 184
>gi|392957549|ref|ZP_10323072.1| ribosome recycling factor [Bacillus macauensis ZFHKF-1]
gi|391876512|gb|EIT85109.1| ribosome recycling factor [Bacillus macauensis ZFHKF-1]
Length = 185
Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 125/174 (71%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM++ I + SVR GR+NP++LD+I V+YYG+ L +A I P++ L+IQPYD
Sbjct: 12 RMKKGISAFQRELTSVRAGRANPSLLDRITVDYYGAATPLNQMAGITVPEARLLVIQPYD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+ L IEKAI SDLG+T +NDG++IR+ +P LT ERRKEL K+V K EE KVA+RN+
Sbjct: 72 KTVLGDIEKAIQKSDLGLTTSNDGQIIRIAIPALTEERRKELVKLVKKYGEEAKVALRNV 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA +K +K+ +++ED ++ + D+QKLTD+++ ++D + KE+E+++V
Sbjct: 132 RRDANDELKKAEKDGEITEDELRRYTEDVQKLTDKHISEVDQVATNKEQEIMEV 185
>gi|319789070|ref|YP_004150703.1| ribosome recycling factor [Thermovibrio ammonificans HB-1]
gi|317113572|gb|ADU96062.1| ribosome recycling factor [Thermovibrio ammonificans HB-1]
Length = 185
Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 79/179 (44%), Positives = 133/179 (74%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
KD RM++ +++++ +F +RTGR++ +++ I+V+YYGS +++K IAQI+ P+++ ++
Sbjct: 7 KDADKRMKKAVEVLKADFAGLRTGRASTVLVEDIKVDYYGSTMTIKQIAQISVPEANQIV 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D S + ++EKAI SDLG+ P DG +IR+ LP LT ERRKEL K K AE+ ++
Sbjct: 67 IQPWDASVVPNVEKAIRESDLGVQPQRDGNIIRVILPPLTEERRKELVKKAGKMAEQARI 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RNIR + +K +KL+KE SED++K +LQK+TD+Y K++D++ ++KE+E+L +
Sbjct: 127 AIRNIRHEIMKELDKLKKEGGYSEDDIKRAKDELQKITDKYTKEVDNLLQKKEEEILTI 185
>gi|410618532|ref|ZP_11329475.1| ribosome recycling factor [Glaciecola polaris LMG 21857]
gi|410161916|dbj|GAC33613.1| ribosome recycling factor [Glaciecola polaris LMG 21857]
Length = 185
Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 88/181 (48%), Positives = 126/181 (69%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I D + RME++I +R F +RTGR++P++LD I V YYG+P LK +A + DS +
Sbjct: 5 INVDARQRMEKSILALRGQFTKIRTGRAHPSLLDSIMVPYYGAPTPLKQLANVIAEDSRT 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L + +DKS+ +++EKAI+ SDLG+ P + G VIR+ +P LT ERRK L +VV +AE G
Sbjct: 65 LALTVFDKSAAQAVEKAIMQSDLGLNPMSAGTVIRIPMPALTEERRKNLIRVVRGEAEGG 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
+VAVRNIRRDA ++L KEK++SED+ +QKLTDE++K+ID I KE EL++
Sbjct: 125 RVAVRNIRRDANGDLKELLKEKEISEDDAHRGEEAIQKLTDEFVKQIDDILAAKETELME 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|418962549|ref|ZP_13514405.1| ribosome recycling factor [Streptococcus anginosus subsp. whileyi
CCUG 39159]
gi|383345338|gb|EID23464.1| ribosome recycling factor [Streptococcus anginosus subsp. whileyi
CCUG 39159]
Length = 185
Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 127/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K RM ++ + F S+R GR+N ++LD+I VEYYG L IA I P++
Sbjct: 3 NAIVEKAKERMTQSHQSLAREFGSIRAGRANASLLDRISVEYYGVETPLNQIASITIPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+ P+DKSS+K IE+A+ +SDLG+TP +DG VIRL +P LT E R++L+K V K E
Sbjct: 63 RVLLVTPFDKSSIKDIERALNASDLGITPASDGTVIRLVIPALTEETRRDLAKEVKKVGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
K+A+RNIRRDA+ +K +K K+++ED +K L D+QK+TDE +K ID + KEKEL
Sbjct: 123 NAKIAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDEAVKHIDDMTASKEKEL 182
Query: 274 LKV 276
++V
Sbjct: 183 IEV 185
>gi|15673991|ref|NP_268166.1| ribosome recycling factor [Lactococcus lactis subsp. lactis Il1403]
gi|281492614|ref|YP_003354594.1| ribosome recycling factor [Lactococcus lactis subsp. lactis KF147]
gi|385831538|ref|YP_005869351.1| ribosome recycling factor [Lactococcus lactis subsp. lactis CV56]
gi|418037252|ref|ZP_12675635.1| hypothetical protein LLCRE1631_00442 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|13878747|sp|Q9CE39.1|RRF_LACLA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|12725055|gb|AAK06107.1|AE006430_12 ribosome recycling factor [Lactococcus lactis subsp. lactis Il1403]
gi|281376278|gb|ADA65769.1| Ribosome recycling factor [Lactococcus lactis subsp. lactis KF147]
gi|326407547|gb|ADZ64618.1| ribosome recycling factor [Lactococcus lactis subsp. lactis CV56]
gi|354694739|gb|EHE94382.1| hypothetical protein LLCRE1631_00442 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|374674103|dbj|BAL51994.1| ribosome recycling factor [Lactococcus lactis subsp. lactis IO-1]
Length = 185
Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 126/174 (72%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM++++ ++ + +R GR+N ++LD+++V YYG+P L +A I P++ L++ P+D
Sbjct: 12 RMKQSLGSLQRDLGHIRAGRANASLLDRVQVVYYGAPTPLNQLASITIPEARVLMVTPFD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS LK IEKA+ SDLG+TP NDG VIRL +P LT ERR+EL K + K E KVA+RNI
Sbjct: 72 KSILKDIEKALYESDLGITPANDGSVIRLVIPMLTEERRRELVKEMGKYIESAKVAIRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA+ +K +K K+++ED++KDL +++QK+TD+ +K+ D + KEKELL +
Sbjct: 132 RRDAMDTAKKSEKAKEITEDDLKDLENNIQKVTDDAVKEADRLASIKEKELLDI 185
>gi|373495435|ref|ZP_09586020.1| ribosome recycling factor [Eubacterium infirmum F0142]
gi|371964913|gb|EHO82417.1| ribosome recycling factor [Eubacterium infirmum F0142]
Length = 182
Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 90/178 (50%), Positives = 134/178 (75%), Gaps = 2/178 (1%)
Query: 100 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQ 159
++ R+E++ ++R++ N+VR GR+N ++LDK+ V+YYG+P LK+I+ I+TPD +LLI
Sbjct: 6 LEERIEKSKQILRSDLNTVRAGRANASLLDKVLVDYYGTPSPLKNISNISTPDPRTLLIA 65
Query: 160 PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAV 219
P+D SSL IEKAI S+LG+TP+NDG+ IRL +PQLT ERRKEL+K++ K E+ K+AV
Sbjct: 66 PFDPSSLPEIEKAINKSELGITPSNDGKCIRLVVPQLTEERRKELTKIIKKMGEDCKIAV 125
Query: 220 RNIRRDALKAYEKLQKEKKLSEDNV-KDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RN+RRD +K QK +LSED + K+L S +QK + +K+ID I +K+KEL++V
Sbjct: 126 RNMRRDENDHLKKQQKGGELSEDELAKELDS-VQKTIEAAIKEIDQIIAEKDKELMEV 182
>gi|359300205|ref|ZP_09186044.1| ribosome recycling factor [Haemophilus [parainfluenzae] CCUG 13788]
gi|402305352|ref|ZP_10824411.1| ribosome recycling factor [Haemophilus sputorum HK 2154]
gi|400376465|gb|EJP29352.1| ribosome recycling factor [Haemophilus sputorum HK 2154]
Length = 185
Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 80/181 (44%), Positives = 132/181 (72%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I++D +ARME++++ ++++ + +RTGR+ P++LD ++VEYYGSP L+ +A + D+
Sbjct: 3 NEIKQDAQARMEKSLEALKSHISKIRTGRAQPSLLDGLQVEYYGSPTPLRQVANVVAEDA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L + +DKS + ++EKAI++SDLG+ P++ G IR+ LP LT ERR++L K+V + E
Sbjct: 63 RTLAVNVFDKSLIGAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKSEGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+GK+AVRN+RRDA + L K+K++SE+ ++QKLTD Y+KK+D + KEKEL
Sbjct: 123 QGKIAVRNVRRDANDQIKALLKDKEISENEQHKAEEEIQKLTDSYVKKVDEVLAAKEKEL 182
Query: 274 L 274
L
Sbjct: 183 L 183
>gi|109897577|ref|YP_660832.1| ribosome recycling factor [Pseudoalteromonas atlantica T6c]
gi|410626427|ref|ZP_11337188.1| ribosome recycling factor [Glaciecola mesophila KMM 241]
gi|123361091|sp|Q15WG0.1|RRF_PSEA6 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|109699858|gb|ABG39778.1| ribosome recycling factor [Pseudoalteromonas atlantica T6c]
gi|410153966|dbj|GAC23957.1| ribosome recycling factor [Glaciecola mesophila KMM 241]
Length = 185
Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 87/181 (48%), Positives = 127/181 (70%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I D + RME+++ +R F +RTGR++P++LD I V YYG+P LK +A + DS +
Sbjct: 5 INVDARQRMEKSVLALRGQFTKIRTGRAHPSLLDSIMVPYYGAPTPLKQLANVIAEDSRT 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L + +DKS+ +++EKAI+ SDLG+ P + G VIR+ +P LT ERRK+L +VV +AE G
Sbjct: 65 LALTVFDKSAAQAVEKAIMQSDLGLNPMSAGTVIRIPMPALTEERRKDLIRVVRNEAEGG 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
+VAVRNIRRDA ++L KEK++SED+ +QKLTDE++K+ID I KE EL++
Sbjct: 125 RVAVRNIRRDANGDIKELLKEKEISEDDAHRGEDAIQKLTDEFVKQIDDILAAKETELME 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|422875956|ref|ZP_16922426.1| ribosome recycling factor [Streptococcus sanguinis SK1056]
gi|332362392|gb|EGJ40192.1| ribosome recycling factor [Streptococcus sanguinis SK1056]
Length = 185
Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 88/183 (48%), Positives = 126/183 (68%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K RM + + F S+R GR+N ++LD+I VEYYG L IA I P++
Sbjct: 3 NAIVEKAKERMTHSHQSLAREFGSIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+ P+DKSS+K IE+A+ +SDLG+TP +DG VIRL +P LT E R++L+K V K E
Sbjct: 63 RVLLVTPFDKSSIKDIERALNASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKVGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
KVA+RNIRRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKEL
Sbjct: 123 NAKVAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDEMTVNKEKEL 182
Query: 274 LKV 276
L+V
Sbjct: 183 LEV 185
>gi|452950238|gb|EME55702.1| ribosome recycling factor [Amycolatopsis decaplanina DSM 44594]
Length = 185
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 123/178 (69%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + +ME+ + + + + +SVRTGR++P M +I VEYYG+P L +A +N P++ LI
Sbjct: 8 DAEEKMEKAVSVAKEDLSSVRTGRAHPGMFSRIVVEYYGAPTPLNQMASVNVPEARMALI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+PYD++ L +IEKAI SDLG+ P+NDG VIR+ +PQLT ERRKE+ KV + E+ +V+
Sbjct: 68 KPYDQTQLNAIEKAIRESDLGVNPSNDGNVIRIVIPQLTEERRKEMVKVAKAKGEDARVS 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+R++RR A + ++++K+ + ED V +LQ LTD Y K+D + K KE ELL+V
Sbjct: 128 IRSVRRKAKEELDRIKKDGEAGEDEVVHAEKELQNLTDTYTHKVDELVKHKEAELLEV 185
>gi|395203924|ref|ZP_10394967.1| ribosome recycling factor [Propionibacterium humerusii P08]
gi|422439620|ref|ZP_16516441.1| ribosome recycling factor [Propionibacterium acnes HL037PA3]
gi|422471774|ref|ZP_16548265.1| ribosome recycling factor [Propionibacterium acnes HL037PA2]
gi|422571876|ref|ZP_16647453.1| ribosome recycling factor [Propionibacterium acnes HL044PA1]
gi|313836793|gb|EFS74507.1| ribosome recycling factor [Propionibacterium acnes HL037PA2]
gi|314929799|gb|EFS93630.1| ribosome recycling factor [Propionibacterium acnes HL044PA1]
gi|314972228|gb|EFT16325.1| ribosome recycling factor [Propionibacterium acnes HL037PA3]
gi|328907655|gb|EGG27419.1| ribosome recycling factor [Propionibacterium humerusii P08]
Length = 184
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 84/183 (45%), Positives = 126/183 (68%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S I KD + +M + R F ++RTGR+NPAM +K+ VEYYG+P L+ +A P++
Sbjct: 2 SDIIKDAEKKMGSAVGHAREEFAAIRTGRANPAMFNKLMVEYYGTPTPLQQLASFQVPEA 61
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
++LI P+DKS + +EKAI SDLG+ P+NDG V+R LP LT ERRKE K+ +AE
Sbjct: 62 RTVLIAPFDKSCVNDVEKAIRDSDLGVNPSNDGNVVRCVLPALTEERRKEYIKMAKTKAE 121
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
EG++AVRNIRR + +K +K+K++SED + L +L ++T +Y+++ID + K KE EL
Sbjct: 122 EGRIAVRNIRRASNDVVKKQEKDKEISEDEMTRLEKELDQVTRKYVEQIDELLKSKESEL 181
Query: 274 LKV 276
L++
Sbjct: 182 LEI 184
>gi|398333426|ref|ZP_10518131.1| ribosome recycling factor [Leptospira alexanderi serovar Manhao 3
str. L 60]
Length = 184
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 85/178 (47%), Positives = 129/178 (72%), Gaps = 4/178 (2%)
Query: 100 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQ 159
+K +M++TID+V+ +F ++RTGR+NP++++ I V+YYG+ + + I+ P+ L+I
Sbjct: 10 MKTKMDKTIDLVKKDFGTIRTGRANPSLVEDIRVDYYGTLTPINQLGNISVPEPRMLVIS 69
Query: 160 PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAV 219
PYDK +K IEKAI +S LG+ P+NDG VIR+ +P+LT ERRKEL+KVV ++EE KVA+
Sbjct: 70 PYDKGIMKDIEKAIQASGLGLQPSNDGVVIRIIIPELTGERRKELAKVVKSKSEEKKVAI 129
Query: 220 RNIRRDALKAYEKLQKE-KKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RNIRRDA+ E L+K + LS+D VK + +QK TD Y+ KI ++ +KEKE+ +
Sbjct: 130 RNIRRDAM---EDLKKHTEGLSQDEVKTVQDQIQKTTDSYIDKISALTAEKEKEITTI 184
>gi|339444269|ref|YP_004710273.1| hypothetical protein EGYY_06710 [Eggerthella sp. YY7918]
gi|338904021|dbj|BAK43872.1| hypothetical protein EGYY_06710 [Eggerthella sp. YY7918]
Length = 185
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 85/183 (46%), Positives = 126/183 (68%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I + + RM++ + + F SVRTGR+N +LD+I+V+YYG P + +A I TPD+
Sbjct: 3 NDILEQAEGRMQKALSSLGDAFGSVRTGRANAMVLDRIKVDYYGVPTPVNQMAGIKTPDA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
L+I+P+DK L +IE AI+ SDLG+TP+NDG VIRL P LT ERR+EL K AE
Sbjct: 63 HMLVIEPWDKGVLGAIEHAILESDLGVTPSNDGTVIRLPFPSLTEERRRELVKQCKTYAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
E +VAVR R+DA A E+ KE+ L ED+ + +D+QKLTD+Y+ ++D +K+KE E+
Sbjct: 123 EARVAVRKARQDANAAIERAVKEESLPEDDERRAQADVQKLTDKYVAEVDEAFKKKEAEV 182
Query: 274 LKV 276
+++
Sbjct: 183 MEI 185
>gi|229829209|ref|ZP_04455278.1| hypothetical protein GCWU000342_01296 [Shuttleworthia satelles DSM
14600]
gi|229792372|gb|EEP28486.1| hypothetical protein GCWU000342_01296 [Shuttleworthia satelles DSM
14600]
Length = 189
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 83/172 (48%), Positives = 123/172 (71%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M+++++ + + S+R GR+NP +LDKIEVEYYG+P L+ +A ++ P++ + IQP++
Sbjct: 16 KMKKSVNALLAEYVSIRAGRANPHILDKIEVEYYGAPTPLQQVANVSVPEARMIQIQPWE 75
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
S LK IEKAI SD+G+ P NDG+ IRL P+LT +RRKEL K V K+ E KVA+RNI
Sbjct: 76 SSLLKEIEKAINMSDVGIHPTNDGKTIRLVFPELTEDRRKELVKDVKKKGENAKVAIRNI 135
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
RRDA+ ++KL+K + +SED + DL QKLTD Y+K +D +K +EL+
Sbjct: 136 RRDAMDEFKKLKKSEDMSEDAIADLEDQAQKLTDRYVKILDQEIDKKTQELM 187
>gi|325262932|ref|ZP_08129668.1| ribosome recycling factor [Clostridium sp. D5]
gi|324032026|gb|EGB93305.1| ribosome recycling factor [Clostridium sp. D5]
Length = 183
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 124/174 (71%), Gaps = 1/174 (0%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +T++ + + ++R GR+NP +LD++ V+YYG+P ++ +A ++ P++ + IQP++
Sbjct: 11 KMTKTVENLNSELATIRAGRANPHVLDRLSVDYYGTPTPIQQVANVSVPEARMIQIQPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS LK IEKAI SD+G+ P NDG IRL P+LT ERRKEL K V K+ E KVAVRNI
Sbjct: 71 KSLLKEIEKAINMSDIGINPTNDGNTIRLVFPELTEERRKELVKDVKKKGEAAKVAVRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD +A++KL K ++SED +KDL LQK+TD+++ K+D + K KE+L V
Sbjct: 131 RRDGNEAFKKL-KGGEISEDGIKDLEESLQKMTDKFIAKVDGCVETKSKEVLTV 183
>gi|406659438|ref|ZP_11067576.1| ribosome recycling factor [Streptococcus iniae 9117]
gi|405577547|gb|EKB51695.1| ribosome recycling factor [Streptococcus iniae 9117]
Length = 185
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 124/174 (71%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
R E++ + + +R GR+N ++LD+I+VEYYG+ L +A I P++ LLI P+D
Sbjct: 12 RFEQSHHSLSREYAGIRAGRANASLLDRIQVEYYGAMTPLNQLASITVPEARVLLISPFD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KSS+K IE+AI +SDLG+TP++DG VIRL +P LT E RK L+K V K E K+A+RNI
Sbjct: 72 KSSIKEIERAINASDLGITPSSDGSVIRLVIPALTEETRKSLAKDVKKVGENAKIAIRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA++ +K +K K+++ED +K L D+QK TD+ +K IDS+ KEKELL+V
Sbjct: 132 RRDAMEEAKKQEKAKEITEDELKSLEKDIQKATDDAIKHIDSMTANKEKELLEV 185
>gi|410942186|ref|ZP_11373974.1| ribosome recycling factor [Leptospira noguchii str. 2006001870]
gi|410782728|gb|EKR71731.1| ribosome recycling factor [Leptospira noguchii str. 2006001870]
Length = 184
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 129/178 (72%), Gaps = 4/178 (2%)
Query: 100 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQ 159
+K +M++TI++V+ +F ++RTGR+NP++++ I V+YYG+ + + I+ P+ L+I
Sbjct: 10 MKTKMDKTIELVKKDFGTIRTGRANPSLVEDIRVDYYGTQTPINQLGNISVPEPRMLVIS 69
Query: 160 PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAV 219
PYDK +K IEKAI +S LG+ P NDG VIR+ +P+LT ERRKEL+KVV ++EE KVA+
Sbjct: 70 PYDKGIMKDIEKAIQTSGLGLQPTNDGVVIRIVIPELTGERRKELAKVVKSKSEEKKVAI 129
Query: 220 RNIRRDALKAYEKLQKE-KKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RNIRRDA+ E L+K + +S+D +K + +QK+TD Y+ KI S+ +KEKE+ +
Sbjct: 130 RNIRRDAM---EDLKKHTEGMSQDEIKSVQDQIQKITDSYIDKISSLTTEKEKEITTI 184
>gi|350562908|ref|ZP_08931731.1| ribosome recycling factor [Thioalkalimicrobium aerophilum AL3]
gi|349779774|gb|EGZ34115.1| ribosome recycling factor [Thioalkalimicrobium aerophilum AL3]
Length = 185
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 81/183 (44%), Positives = 129/183 (70%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S I D +RM++++D + TNF +RTGR++P++LD ++V+YYGS V + +A IN D+
Sbjct: 3 SEIRSDADSRMQKSVDTLVTNFAKIRTGRAHPSILDSVKVDYYGSEVPISQVANINVEDA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L +QP+++ L+ IEKAI+ SDLG+ P G ++R+ +P LT ERRKE +K+ +AE
Sbjct: 63 RTLTVQPWEQPMLQKIEKAIMMSDLGINPVTTGNMMRIPMPMLTEERRKEFAKLARSEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
KVA+RNIRRDA + L K+K+++ED + D+QKLTD+Y+ ++DS+ +KE L
Sbjct: 123 NAKVAIRNIRRDANGDVKNLLKDKEITEDEARRSDDDIQKLTDKYVAQVDSLLAEKEASL 182
Query: 274 LKV 276
L++
Sbjct: 183 LEI 185
>gi|167746791|ref|ZP_02418918.1| hypothetical protein ANACAC_01503 [Anaerostipes caccae DSM 14662]
gi|317471594|ref|ZP_07930938.1| ribosome recycling protein [Anaerostipes sp. 3_2_56FAA]
gi|167653751|gb|EDR97880.1| ribosome recycling factor [Anaerostipes caccae DSM 14662]
gi|316900909|gb|EFV22879.1| ribosome recycling protein [Anaerostipes sp. 3_2_56FAA]
Length = 181
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 128/179 (71%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K + +M+++ + + + F ++R GR+NP +LDK+ V+YYG P ++ + ++ P++ ++L
Sbjct: 3 KKFEDKMQKSYENMTSEFMAIRAGRANPHVLDKVTVDYYGVPTPIQQVGNVSVPEARTIL 62
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP++ + L IEKAI+ SD+G+TPNNDG IRL P+LT ERRK+L+K + K+ E KV
Sbjct: 63 IQPWEPNLLGEIEKAIMMSDIGITPNNDGSAIRLNFPELTEERRKDLAKDIKKRGETTKV 122
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
AVRNIRRDA +K+ K +L++D +KD S++QKLTD Y+KKID + K KE++ V
Sbjct: 123 AVRNIRRDANDELKKMNKANELNDDQLKDQESEVQKLTDVYIKKIDDAVEAKSKEIMTV 181
>gi|384147136|ref|YP_005529952.1| ribosome recycling factor [Amycolatopsis mediterranei S699]
gi|340525290|gb|AEK40495.1| ribosome recycling factor [Amycolatopsis mediterranei S699]
Length = 185
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 122/178 (68%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + +ME+ + + + SVRTGR++ AM +I VEYYGSP L +A +N P++ LI
Sbjct: 8 DAEEKMEKAVSVAKDELQSVRTGRASSAMFSRIVVEYYGSPTPLNQLASVNVPEARMALI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+PYD+S L +IEKAI SDLG+ P+NDG+VIR+ +PQLT ERRKE+ KV + E+ +V+
Sbjct: 68 KPYDQSQLNAIEKAIRESDLGVNPSNDGQVIRIVIPQLTEERRKEMVKVAKGKGEDARVS 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+R+IRR A +++ K+ + ED+V +LQ LTD Y+ K+D + K KE ELL+V
Sbjct: 128 IRSIRRKAKDELDRIAKDGEAGEDDVARAEKELQNLTDTYVHKVDELIKHKEAELLEV 185
>gi|317153887|ref|YP_004121935.1| ribosome recycling factor [Desulfovibrio aespoeensis Aspo-2]
gi|316944138|gb|ADU63189.1| ribosome recycling factor [Desulfovibrio aespoeensis Aspo-2]
Length = 184
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 81/182 (44%), Positives = 130/182 (71%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
S+ D K RM I + +F+ +RTGR+ A++D I V+YYG+P + ++ ++ PD+
Sbjct: 3 SVLNDGKKRMAGAISALEKDFSKLRTGRATTALVDTIVVDYYGTPTPINQLSSVSVPDAK 62
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
S+ IQP+D+ + ++EKAI +SDLG+ P NDG++IR+++P LT ERRKEL KV K EE
Sbjct: 63 SITIQPWDRGAFGAVEKAIQTSDLGLNPVNDGKIIRISIPPLTEERRKELVKVAKKYTEE 122
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
K+A+RN+RRD + +KL+K+K +SED +K +D+QKLTD+++K+ + + KEKE+L
Sbjct: 123 CKIAIRNVRRDLNDSLKKLEKDKAISEDELKKGEADVQKLTDDFVKQSEGVLVAKEKEIL 182
Query: 275 KV 276
++
Sbjct: 183 EI 184
>gi|322385103|ref|ZP_08058750.1| ribosome recycling factor [Streptococcus cristatus ATCC 51100]
gi|417921691|ref|ZP_12565181.1| ribosome recycling factor [Streptococcus cristatus ATCC 51100]
gi|321270727|gb|EFX53640.1| ribosome recycling factor [Streptococcus cristatus ATCC 51100]
gi|342833576|gb|EGU67856.1| ribosome recycling factor [Streptococcus cristatus ATCC 51100]
Length = 185
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 127/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K RM + + F S+R GR+N ++LD+I VEYYG L ++ I P++
Sbjct: 3 NAIVEKAKERMTHSHQSLAREFGSIRAGRANASLLDRIHVEYYGVETPLNQLSSITIPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+ P+DKSS+K IE+AI +SDLG+TP++DG VIRL +P LT E R+EL+K V K E
Sbjct: 63 RVLLVTPFDKSSIKDIERAINASDLGITPSSDGSVIRLVIPALTEETRRELAKEVKKVGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
K+A+RNIRRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKEL
Sbjct: 123 NAKIAIRNIRRDAMDEAKKQEKAKEITEDELKVLEKDIQKVTDDAVKHIDDMTATKEKEL 182
Query: 274 LKV 276
L+V
Sbjct: 183 LEV 185
>gi|295396357|ref|ZP_06806523.1| ribosome recycling factor [Brevibacterium mcbrellneri ATCC 49030]
gi|294970797|gb|EFG46706.1| ribosome recycling factor [Brevibacterium mcbrellneri ATCC 49030]
Length = 185
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 82/183 (44%), Positives = 125/183 (68%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I K+ A+M+ I+ ++ F +VRTGR+NP + I VEYYG+P ++ +A P++
Sbjct: 3 NGILKEASAKMDGAIEATQSAFGNVRTGRANPGLFANIPVEYYGTPTPMQQLASFQVPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
++LI PYD+ +L IE A+ +SD+G P NDG VIR+TLP+LT ERRKE K+V AE
Sbjct: 63 RTILITPYDRGALTDIENALRNSDIGANPANDGNVIRVTLPELTEERRKEYVKIVKGDAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
EG+++VRN+RR A + E++QK+ + ED VK +L ++T + + +IDS+ KEKEL
Sbjct: 123 EGRISVRNVRRKAKEQLERIQKDGEAGEDEVKHALGELDEITKKKVDEIDSLLAAKEKEL 182
Query: 274 LKV 276
L+V
Sbjct: 183 LEV 185
>gi|154506087|ref|ZP_02042825.1| hypothetical protein RUMGNA_03629 [Ruminococcus gnavus ATCC 29149]
gi|336433435|ref|ZP_08613255.1| ribosome-recycling factor [Lachnospiraceae bacterium 2_1_58FAA]
gi|153793586|gb|EDN76006.1| ribosome recycling factor [Ruminococcus gnavus ATCC 29149]
gi|336016366|gb|EGN46153.1| ribosome-recycling factor [Lachnospiraceae bacterium 2_1_58FAA]
Length = 183
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 123/174 (70%), Gaps = 1/174 (0%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +TI+ + + ++R GR+NP +LDK+ V+YYG P ++ A I+ P++ + IQP++
Sbjct: 11 KMTKTINNLGSELAAIRAGRANPHVLDKLTVDYYGVPTPIQQAANISVPEARMIQIQPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS LK IEKAI+ SD+G+ P NDG V+RL P+LT ERRKEL K V K+ E KVA+RNI
Sbjct: 71 KSMLKEIEKAILMSDIGINPTNDGTVVRLMFPELTEERRKELVKDVKKKGEAAKVAIRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD A++KL K ++SED +KDL LQKLTD+Y+ ++D + K KE+L V
Sbjct: 131 RRDGNDAFKKL-KGTEISEDGIKDLEDSLQKLTDKYIAEVDKAVEAKSKEVLTV 183
>gi|120599549|ref|YP_964123.1| ribosome recycling factor [Shewanella sp. W3-18-1]
gi|146292454|ref|YP_001182878.1| ribosome recycling factor [Shewanella putrefaciens CN-32]
gi|386313131|ref|YP_006009296.1| ribosome recycling factor [Shewanella putrefaciens 200]
gi|166231227|sp|A4Y546.1|RRF_SHEPC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|166231510|sp|A1RLM4.1|RRF_SHESW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|120559642|gb|ABM25569.1| ribosome recycling factor [Shewanella sp. W3-18-1]
gi|145564144|gb|ABP75079.1| ribosome recycling factor [Shewanella putrefaciens CN-32]
gi|319425756|gb|ADV53830.1| ribosome recycling factor [Shewanella putrefaciens 200]
Length = 185
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/182 (44%), Positives = 127/182 (69%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
+I+KD + RM + +D + VRTGR++P++LD I+V YYG+ L +A + DS
Sbjct: 4 NIKKDAQERMGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGVEDSR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
+L + +D+S+++++EKAI+SSDLG+ P + G +R+ LP LT ERRK+ KVV +AE
Sbjct: 64 TLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRAEAEG 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
G+VA+RN+RRDA+ +KL+K K+ +ED+V+ D+QK TD ++KK+D I KE EL+
Sbjct: 124 GRVAIRNVRRDAISEVKKLEKAKECTEDDVRRFEDDVQKFTDAHIKKVDEILAAKEIELM 183
Query: 275 KV 276
+V
Sbjct: 184 EV 185
>gi|300783895|ref|YP_003764186.1| ribosome recycling factor [Amycolatopsis mediterranei U32]
gi|399535780|ref|YP_006548442.1| ribosome recycling factor [Amycolatopsis mediterranei S699]
gi|299793409|gb|ADJ43784.1| ribosome recycling factor [Amycolatopsis mediterranei U32]
gi|398316550|gb|AFO75497.1| ribosome recycling factor [Amycolatopsis mediterranei S699]
Length = 187
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 122/178 (68%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + +ME+ + + + SVRTGR++ AM +I VEYYGSP L +A +N P++ LI
Sbjct: 10 DAEEKMEKAVSVAKDELQSVRTGRASSAMFSRIVVEYYGSPTPLNQLASVNVPEARMALI 69
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+PYD+S L +IEKAI SDLG+ P+NDG+VIR+ +PQLT ERRKE+ KV + E+ +V+
Sbjct: 70 KPYDQSQLNAIEKAIRESDLGVNPSNDGQVIRIVIPQLTEERRKEMVKVAKGKGEDARVS 129
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+R+IRR A +++ K+ + ED+V +LQ LTD Y+ K+D + K KE ELL+V
Sbjct: 130 IRSIRRKAKDELDRIAKDGEAGEDDVARAEKELQNLTDTYVHKVDELIKHKEAELLEV 187
>gi|393762679|ref|ZP_10351305.1| ribosome recycling factor [Alishewanella agri BL06]
gi|392606301|gb|EIW89186.1| ribosome recycling factor [Alishewanella agri BL06]
Length = 185
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/183 (45%), Positives = 134/183 (73%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I D K RME+++D +++ VRTGR++P++LD I+V YYG+ L+ +A ++ DS
Sbjct: 3 NDIIADAKVRMEKSVDALKSQLTKVRTGRAHPSLLDGIQVSYYGADTPLRQVANVSIEDS 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L I +DKS +++EKAI++S+LG+ P + G VIR+ LP LT ERRK+L K+V +AE
Sbjct: 63 RTLAITVFDKSLTQAVEKAIMASNLGLNPMSAGTVIRVPLPPLTEERRKDLVKLVRGEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
G+VA+RNIRRDA ++ L K+K++SED+ + + ++QK+TD ++KK+D + +KEKEL
Sbjct: 123 GGRVAIRNIRRDANADFKALLKDKEISEDDERKAADEIQKITDLFVKKVDDVLAEKEKEL 182
Query: 274 LKV 276
++V
Sbjct: 183 MEV 185
>gi|407795711|ref|ZP_11142669.1| ribosome recycling factor [Salimicrobium sp. MJ3]
gi|407020052|gb|EKE32766.1| ribosome recycling factor [Salimicrobium sp. MJ3]
Length = 185
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 130/179 (72%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+ K +M++ +VR GR+NP++LD + V+YYG+ L+ +AQ++ P+ L+
Sbjct: 7 KETKEQMKKATQAFSKQLATVRAGRANPSILDPVYVDYYGASTPLQQLAQVSAPEPRLLV 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I PYDKS++ +EKAI +DLG++P++DG V+R+ +P LT ERRK+L+K+V K EE KV
Sbjct: 67 ITPYDKSAISEVEKAIQKADLGLSPSSDGNVVRINIPALTQERRKDLTKLVKKYTEEAKV 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRR+ A +K +K+ +L+ED+++ D+QKLTDEY+K+ID + KQKE+E+L+V
Sbjct: 127 QIRNIRRETNDALKKNEKDGELTEDDLRSYQDDVQKLTDEYVKEIDDLSKQKEEEMLEV 185
>gi|408401175|ref|YP_006859138.1| ribosome releasing factor [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|407967403|dbj|BAM60641.1| ribosome releasing factor [Streptococcus dysgalactiae subsp.
equisimilis RE378]
Length = 185
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 84/162 (51%), Positives = 119/162 (73%)
Query: 115 FNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIV 174
+ S+R GR+N ++LD+I+V+YYG+ L +A I P++ LLI P+DKSS+K IE+A+
Sbjct: 24 YASIRAGRANASLLDRIQVDYYGALTPLNQLASITVPEARVLLISPFDKSSIKDIERALN 83
Query: 175 SSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQ 234
+SDLG+TP NDG VIRL +P LT E RKEL+K V K E K+A+RNIRRDA+ +K +
Sbjct: 84 ASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDDAKKQE 143
Query: 235 KEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
K K+++ED +K L D+QK TD+ +K+ID + +KEKELL V
Sbjct: 144 KAKEITEDELKTLEKDIQKATDDAIKEIDRMTAEKEKELLSV 185
>gi|418678138|ref|ZP_13239412.1| ribosome recycling factor [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|418686537|ref|ZP_13247703.1| ribosome recycling factor [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|418741061|ref|ZP_13297437.1| ribosome recycling factor [Leptospira kirschneri serovar Valbuzzi
str. 200702274]
gi|421089379|ref|ZP_15550189.1| ribosome recycling factor [Leptospira kirschneri str. 200802841]
gi|421130082|ref|ZP_15590280.1| ribosome recycling factor [Leptospira kirschneri str. 2008720114]
gi|400321328|gb|EJO69188.1| ribosome recycling factor [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|410001910|gb|EKO52437.1| ribosome recycling factor [Leptospira kirschneri str. 200802841]
gi|410358681|gb|EKP05832.1| ribosome recycling factor [Leptospira kirschneri str. 2008720114]
gi|410738970|gb|EKQ83702.1| ribosome recycling factor [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|410751656|gb|EKR08633.1| ribosome recycling factor [Leptospira kirschneri serovar Valbuzzi
str. 200702274]
Length = 184
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 129/178 (72%), Gaps = 4/178 (2%)
Query: 100 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQ 159
+K +M++TI++V+ +F ++RTGR+NP++++ I V+YYG+ + + I+ P+ L+I
Sbjct: 10 MKTKMDKTIELVKKDFGTIRTGRANPSLVEDIRVDYYGTQTPINQLGNISVPEPRILVIS 69
Query: 160 PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAV 219
PYDK +K IEKAI +S LG+ P NDG VIR+ +P+LT ERRKEL+KVV ++EE KVA+
Sbjct: 70 PYDKGIMKDIEKAIQTSGLGLQPTNDGVVIRIVIPELTGERRKELAKVVKSKSEEKKVAI 129
Query: 220 RNIRRDALKAYEKLQKE-KKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RNIRRDA+ E L+K + +S+D +K + +QK+TD Y+ KI S+ +KEKE+ +
Sbjct: 130 RNIRRDAM---EDLKKHTEGMSQDEIKSVQDQIQKITDSYIDKISSLTAEKEKEITTI 184
>gi|343524333|ref|ZP_08761291.1| ribosome recycling factor [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
gi|343397982|gb|EGV10515.1| ribosome recycling factor [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
Length = 185
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 127/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K RM ++ + F S+R GR+N ++LD+I VEYYG L IA I P++
Sbjct: 3 NAIVEKAKERMTQSHQSLAREFGSIRAGRANASLLDRISVEYYGVETPLNQIASITIPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+ P+DKSS+K IE+A+ +SDLG+TP +DG VIRL +P LT E R++L+K V K E
Sbjct: 63 RVLLVTPFDKSSIKDIERALNASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKVGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
K+A+RNIRRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKEL
Sbjct: 123 NAKIAIRNIRRDAMDEAKKQEKAKEITEDELKGLEKDIQKVTDDAVKHIDEMTSTKEKEL 182
Query: 274 LKV 276
L+V
Sbjct: 183 LEV 185
>gi|357636520|ref|ZP_09134395.1| ribosome recycling factor [Streptococcus macacae NCTC 11558]
gi|357584974|gb|EHJ52177.1| ribosome recycling factor [Streptococcus macacae NCTC 11558]
Length = 185
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/181 (52%), Positives = 125/181 (69%), Gaps = 1/181 (0%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
IEK K R E++ + F S+R GR+N A+LD+IEVEYYG L +A I+ P++
Sbjct: 6 IEK-AKERFEQSHQSLGREFASIRAGRANAALLDRIEVEYYGVLTPLNQLASISVPEARV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LLI P+DKSSLK IE AI +SDLG+ P NDG VIRL +P LT E R++L+K V K E
Sbjct: 65 LLISPFDKSSLKDIEHAINASDLGINPANDGSVIRLVIPALTEETRRDLAKEVKKVGESA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVA+RNIRRDA+ +K +K K+++ED +K L D+QK+TDE +K ID + KEKELL
Sbjct: 125 KVAIRNIRRDAMDEAKKAEKAKEMTEDELKSLEKDIQKITDEAVKHIDDMTTNKEKELLD 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|238926718|ref|ZP_04658478.1| peptide chain release factor RF4 [Selenomonas flueggei ATCC 43531]
gi|238885250|gb|EEQ48888.1| peptide chain release factor RF4 [Selenomonas flueggei ATCC 43531]
Length = 185
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/173 (47%), Positives = 126/173 (72%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M + ID++R F+S+R GR+ P +LDK+ V YYG+P S+ +A++ P+ ++I P++K
Sbjct: 13 MNKAIDVLRREFSSLRAGRATPNLLDKVMVPYYGTPTSVNQLAKVTVPEPHMIVITPWEK 72
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
+ L IE AI SDLG++PN+DG VIRL +PQ T ERRKEL K V K+ EE KVA+RNIR
Sbjct: 73 AILHEIEIAISKSDLGLSPNSDGNVIRLAIPQPTQERRKELIKTVGKKTEEAKVALRNIR 132
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RDA +A +KL+K+K+++ED K +QKL D+++K++D + KEKE++++
Sbjct: 133 RDANEAIKKLEKDKEINEDESKRGQDSVQKLVDKFVKQMDEMRTAKEKEVMEI 185
>gi|68536249|ref|YP_250954.1| ribosome recycling factor [Corynebacterium jeikeium K411]
gi|260578949|ref|ZP_05846852.1| ribosome recycling factor [Corynebacterium jeikeium ATCC 43734]
gi|123650872|sp|Q4JV21.1|RRF_CORJK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|68263848|emb|CAI37336.1| frr [Corynebacterium jeikeium K411]
gi|258602923|gb|EEW16197.1| ribosome recycling factor [Corynebacterium jeikeium ATCC 43734]
Length = 185
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 124/174 (71%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM +++ R + ++RTGR+NP+M + + EYYG P + +A I+ P+ LLI+PY+
Sbjct: 12 RMTSSVEHAREDLTTIRTGRANPSMFNGVVAEYYGVPTPITQMATISVPEPRMLLIKPYE 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
+S++ +IE AI +SDLG+ P NDG+V+R+T+PQLT ERRKE+ KV + E+ K+A+RNI
Sbjct: 72 QSTMDAIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRKEMVKVAKSKGEDAKIAIRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RR ++ K+QK+ + ED V+ DL+K+T Y++++DS+ + KEKELL+V
Sbjct: 132 RRKGMEQLGKIQKDGEAGEDEVRAAEKDLEKITHSYVEQVDSLVEAKEKELLEV 185
>gi|256827506|ref|YP_003151465.1| ribosome recycling factor [Cryptobacterium curtum DSM 15641]
gi|256583649|gb|ACU94783.1| ribosome recycling factor [Cryptobacterium curtum DSM 15641]
Length = 186
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 121/174 (69%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RME+ +D + F++VRTGR+N +LD+I V+YYG P + +A I TPD+ L+I+P+D
Sbjct: 13 RMEKAVDSLGEAFSNVRTGRANAMVLDRIRVDYYGVPTPINQMAAIKTPDAHMLVIEPWD 72
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K +L +IE A+ +S+LG+TP NDG +IRL+ P LT ERR+EL K AEE ++AVRN
Sbjct: 73 KGTLGAIEHALNNSNLGLTPTNDGNLIRLSFPTLTEERRRELVKQCKAYAEEARIAVRNA 132
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA A EK K L ED + +D+QKLTD Y+ K++ +K+KE E++++
Sbjct: 133 RRDANSAVEKAVKNDGLPEDEQRRSEADIQKLTDSYIAKVEESFKKKEAEVMEI 186
>gi|392428381|ref|YP_006469392.1| ribosome recycling factor [Streptococcus intermedius JTH08]
gi|418965688|ref|ZP_13517450.1| ribosome recycling factor [Streptococcus constellatus subsp.
constellatus SK53]
gi|419777520|ref|ZP_14303432.1| ribosome recycling factor [Streptococcus intermedius SK54]
gi|423068950|ref|ZP_17057738.1| ribosome-recycling factor [Streptococcus intermedius F0395]
gi|423070743|ref|ZP_17059519.1| ribosome-recycling factor [Streptococcus intermedius F0413]
gi|355365299|gb|EHG13023.1| ribosome-recycling factor [Streptococcus intermedius F0413]
gi|355365350|gb|EHG13073.1| ribosome-recycling factor [Streptococcus intermedius F0395]
gi|383341791|gb|EID20038.1| ribosome recycling factor [Streptococcus constellatus subsp.
constellatus SK53]
gi|383845000|gb|EID82410.1| ribosome recycling factor [Streptococcus intermedius SK54]
gi|391757527|dbj|BAM23144.1| ribosome recycling factor [Streptococcus intermedius JTH08]
Length = 185
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 127/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K RM ++ + F S+R GR+N ++LD+I VEYYG L IA I P++
Sbjct: 3 NAIVEKAKERMTQSHQSLAREFGSIRAGRANASLLDRITVEYYGVETPLNQIASITIPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+ P+DKSS+K IE+A+ +SDLG+TP +DG VIRL +P LT E R++L+K V K E
Sbjct: 63 RVLLVTPFDKSSIKDIERALNASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKVGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
K+A+RNIRRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKEL
Sbjct: 123 NAKIAIRNIRRDAMDEAKKQEKAKEITEDELKGLEKDIQKVTDDAVKHIDEMTSTKEKEL 182
Query: 274 LKV 276
L+V
Sbjct: 183 LEV 185
>gi|170760155|ref|YP_001787743.1| ribosome recycling factor [Clostridium botulinum A3 str. Loch
Maree]
gi|238688518|sp|B1KWM1.1|RRF_CLOBM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|169407144|gb|ACA55555.1| ribosome recycling factor [Clostridium botulinum A3 str. Loch
Maree]
Length = 184
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 125/174 (71%), Gaps = 1/174 (0%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M ++I ++ S++ GR+NPAMLD+I+ EYYGS L +A I+ P++ LLIQP+D
Sbjct: 12 KMGKSIVALKRELASMKAGRANPAMLDRIDAEYYGSMTPLNQLANISVPEARVLLIQPWD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KSS+ +IEKAI+ SDLG+ P+NDG VIRL +P+LT E RK + K V K EE KVA+R+I
Sbjct: 72 KSSMGAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEETKVAIRSI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD + L+K+ +SED++K D+QK TD+Y+K+IDSI KEKE+L +
Sbjct: 132 RRDCNDDVKNLKKD-DVSEDDIKKTEDDIQKKTDKYIKEIDSIISAKEKEILSI 184
>gi|398344747|ref|ZP_10529450.1| ribosome recycling factor [Leptospira inadai serovar Lyme str. 10]
Length = 184
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/178 (46%), Positives = 128/178 (71%), Gaps = 4/178 (2%)
Query: 100 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQ 159
+K++M++T++++R +F +RTGR+NPA+++ I+VEYYG+P + + I+ P+ L++
Sbjct: 10 MKSKMDKTVELLRKDFAGIRTGRANPALIEDIKVEYYGAPTPINQLGNISVPEPRLLVVS 69
Query: 160 PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAV 219
PYDK +K IEK I +S LG+ P NDG VIR+ +P+LT ERRKEL+KVV ++EE KVAV
Sbjct: 70 PYDKGIIKDIEKGIQASGLGLQPTNDGSVIRIVIPELTGERRKELAKVVKSKSEEKKVAV 129
Query: 220 RNIRRDALKAYEKLQKE-KKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RNIRRD L E L++ + +S+D +K + +QK+TD Y+ KI ++ KEKE+ +
Sbjct: 130 RNIRRDTL---EDLKRHSEGISQDELKSVQDQVQKITDSYIDKISAVTADKEKEITTI 184
>gi|315651639|ref|ZP_07904650.1| ribosome recycling factor [Lachnoanaerobaculum saburreum DSM 3986]
gi|419718129|ref|ZP_14245465.1| ribosome recycling factor [Lachnoanaerobaculum saburreum F0468]
gi|315486093|gb|EFU76464.1| ribosome recycling factor [Lachnoanaerobaculum saburreum DSM 3986]
gi|383305730|gb|EIC97079.1| ribosome recycling factor [Lachnoanaerobaculum saburreum F0468]
Length = 184
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 124/174 (71%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M ++ID++ + S+R GR+NP +LD+I+VEYYG+P ++ + I+ P+ + I P++
Sbjct: 11 KMTKSIDVLLEEYASIRAGRANPHVLDRIKVEYYGTPTPIQQVGNISVPEPRIIQISPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS LK IEKAI SDLG+ P NDG IRL P+LT ERRKEL K V K+ E KVAVRNI
Sbjct: 71 KSLLKEIEKAINMSDLGINPTNDGSCIRLVFPELTEERRKELVKDVKKKGEACKVAVRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA+ A +KL+K + +ED+VKD + +QK+TD+ ++++D + K KE+L V
Sbjct: 131 RRDAIDAVKKLEKAGEFTEDDVKDGENKIQKITDKAIERVDKAIEDKSKEILTV 184
>gi|254303395|ref|ZP_04970753.1| ribosome recycling factor [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|422338810|ref|ZP_16419770.1| ribosome recycling factor [Fusobacterium nucleatum subsp.
polymorphum F0401]
gi|148323587|gb|EDK88837.1| ribosome recycling factor [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|355371937|gb|EHG19280.1| ribosome recycling factor [Fusobacterium nucleatum subsp.
polymorphum F0401]
Length = 190
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/178 (47%), Positives = 131/178 (73%), Gaps = 2/178 (1%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+ + +M +TI+ V+ F ++R GR+N +MLD ++VE YGS V L I ++ P++ L+
Sbjct: 10 KECEEKMLKTIEAVKEKFTAIRAGRANVSMLDGVKVENYGSEVPLNQIGTVSAPEARLLV 69
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I P+DKS + IEKA+++++LGMTPNNDG VIRL LP+LT++RRKE K+ +AE GK+
Sbjct: 70 IDPWDKSLISKIEKALLAANLGMTPNNDGRVIRLVLPELTADRRKEYVKLAKNEAENGKI 129
Query: 218 AVRNIRRDALKAYEKLQKEKK--LSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
AVRNIR+D +KL+K+K+ +SED +K + +Q LTD+Y+K+ID ++ +KEKE+
Sbjct: 130 AVRNIRKDINNHLKKLEKDKENPISEDELKKEEATVQTLTDKYVKEIDDLFAKKEKEI 187
>gi|339443416|ref|YP_004709421.1| hypothetical protein CXIVA_23520 [Clostridium sp. SY8519]
gi|338902817|dbj|BAK48319.1| hypothetical protein CXIVA_23520 [Clostridium sp. SY8519]
Length = 184
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 128/174 (73%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M+++ + + + S+R GR+NP +LD+I ++YYG+P L+ +A ++ P++ ++I P++
Sbjct: 11 KMQKSYNNLLEEYGSIRAGRANPHVLDQIRIDYYGAPTPLQQVANVSVPEARMIMIAPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K LK IEKAI+ SDLG+ P NDG+ IRL P+LT ERRK++SK V K+ E+ KVA+RNI
Sbjct: 71 KKMLKEIEKAIMVSDLGINPINDGQSIRLLFPELTEERRKDISKEVRKKGEDAKVAIRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA + +KL KE+ +SED +KDL ++QK+TD +K+ID ++K KE++ V
Sbjct: 131 RRDANEMLKKLGKEEDVSEDEIKDLQDEVQKMTDARIKEIDGAVEEKTKEIMTV 184
>gi|329769638|ref|ZP_08261042.1| ribosome-recycling factor [Gemella sanguinis M325]
gi|328838393|gb|EGF88002.1| ribosome-recycling factor [Gemella sanguinis M325]
Length = 185
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/181 (45%), Positives = 128/181 (70%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I ++ RME+ I +R S+R G+++ ++LD++ V+YYG + +A I+ P+
Sbjct: 5 IMNNLNERMEKAIANLRRELASIRAGKASASVLDRLTVDYYGVATPINQVAGISVPEPKM 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L+I PY+K+ L IEKAI +SDLG+ P NDG VIR+ P LT ERRKEL+K+V K++E
Sbjct: 65 LVISPYEKTLLGDIEKAIQASDLGLNPANDGTVIRIVFPALTEERRKELAKLVGKESEGA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVAVRN+RRDA+ + +KL+K +++ED++K S D+QK TD+Y+ +ID + K+K+ EL+
Sbjct: 125 KVAVRNVRRDAMDSMKKLEKASQITEDDLKGYSDDIQKATDKYVAEIDKVTKEKQDELMS 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|261344733|ref|ZP_05972377.1| ribosome recycling factor [Providencia rustigianii DSM 4541]
gi|282567175|gb|EFB72710.1| ribosome recycling factor [Providencia rustigianii DSM 4541]
Length = 185
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 84/180 (46%), Positives = 131/180 (72%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I+KD + RME++++ +++ + +RTGR++P++LD I VEYYGS L+ +A + DS +
Sbjct: 5 IQKDAQDRMEKSLEALKSQISKIRTGRASPSLLDGIVVEYYGSATPLRQLANVTVEDSRT 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L I +D+S +IEKAI++SDLG+ P++ G VIR+ LP LT ERRK+L KVV +AE+G
Sbjct: 65 LAISVFDRSMSPAIEKAIMASDLGLNPSSAGTVIRVPLPALTEERRKDLIKVVRGEAEQG 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
++A+RN+RRDA + L K+K++SED+ + D+QKLTD ++KK+D QKE EL++
Sbjct: 125 RIAIRNVRRDANDKVKALLKDKEISEDDERRSQDDIQKLTDSFIKKVDEALAQKEAELME 184
>gi|359685181|ref|ZP_09255182.1| ribosome recycling factor [Leptospira santarosai str. 2000030832]
gi|410449036|ref|ZP_11303102.1| ribosome recycling factor [Leptospira sp. Fiocruz LV3954]
gi|418743918|ref|ZP_13300277.1| ribosome recycling factor [Leptospira santarosai str. CBC379]
gi|418751621|ref|ZP_13307905.1| ribosome recycling factor [Leptospira santarosai str. MOR084]
gi|421110556|ref|ZP_15571051.1| ribosome recycling factor [Leptospira santarosai str. JET]
gi|422004622|ref|ZP_16351837.1| ribosome recycling factor [Leptospira santarosai serovar Shermani
str. LT 821]
gi|409968094|gb|EKO35907.1| ribosome recycling factor [Leptospira santarosai str. MOR084]
gi|410017156|gb|EKO79222.1| ribosome recycling factor [Leptospira sp. Fiocruz LV3954]
gi|410795313|gb|EKR93210.1| ribosome recycling factor [Leptospira santarosai str. CBC379]
gi|410804152|gb|EKS10275.1| ribosome recycling factor [Leptospira santarosai str. JET]
gi|417256676|gb|EKT86092.1| ribosome recycling factor [Leptospira santarosai serovar Shermani
str. LT 821]
gi|456875954|gb|EMF91134.1| ribosome recycling factor [Leptospira santarosai str. ST188]
Length = 184
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 130/178 (73%), Gaps = 4/178 (2%)
Query: 100 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQ 159
+KA+M++TID+V+ +F ++RTGR+NP++++ I V+YYG+ + + I+ P+ L+I
Sbjct: 10 MKAKMDKTIDLVKKDFGTIRTGRANPSLVEDIRVDYYGTLTPINQLGNISVPEPRMLVIS 69
Query: 160 PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAV 219
PYDK +K IEKAI +S LG+ P+NDG VIR+ +P+LT ERRKEL+KVV ++E+ KVA+
Sbjct: 70 PYDKGIMKDIEKAIQTSGLGLQPSNDGVVIRIVIPELTGERRKELAKVVKSKSEDKKVAI 129
Query: 220 RNIRRDALKAYEKLQKE-KKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RNIRRDA+ E L+K + +S+D +K + +QK TD Y+ KI ++ +KEKE+ +
Sbjct: 130 RNIRRDAM---EDLKKHTEGMSQDEIKSVQDQIQKTTDSYIDKISALTAEKEKEITTI 184
>gi|424793702|ref|ZP_18219779.1| ribosome recycling factor [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|433678497|ref|ZP_20510349.1| ribosome recycling factor [Xanthomonas translucens pv. translucens
DSM 18974]
gi|440731286|ref|ZP_20911320.1| ribosome recycling factor [Xanthomonas translucens DAR61454]
gi|422796442|gb|EKU24948.1| ribosome recycling factor [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|430816381|emb|CCP40839.1| ribosome recycling factor [Xanthomonas translucens pv. translucens
DSM 18974]
gi|440374125|gb|ELQ10865.1| ribosome recycling factor [Xanthomonas translucens DAR61454]
Length = 185
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 84/181 (46%), Positives = 126/181 (69%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I++D + RM ++ID +R VRTGR++ A+++ ++V YYGS + L +A + D+ S
Sbjct: 5 IKQDAQTRMAKSIDALRHTLIKVRTGRASTALVEHLKVNYYGSEMPLSQVASVAVADARS 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L I P++K + ++EKAI++SDLG+TPN G IRL LP LT ERR+ELSKVV + E+
Sbjct: 65 LTISPWEKQMVSAVEKAILASDLGLTPNTSGTTIRLNLPALTEERRRELSKVVHGEGEDS 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVA+RNIRRDA + + L K+K ++ED + D+QKLTD+ +K +D + K KE+EL+
Sbjct: 125 KVAIRNIRRDANQQIKDLLKDKHVTEDEARAAEDDIQKLTDKAIKDVDDVVKGKEQELMA 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|149010411|ref|ZP_01831782.1| ribosome recycling factor [Streptococcus pneumoniae SP19-BS75]
gi|147764892|gb|EDK71821.1| ribosome recycling factor [Streptococcus pneumoniae SP19-BS75]
Length = 185
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/181 (49%), Positives = 125/181 (69%), Gaps = 1/181 (0%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
IEK K RM ++ + F +R GR+N ++LD++ VEYYG L IA I P++
Sbjct: 6 IEK-AKERMTQSHQSLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LL+ P+DKSSLK IE+A+ +SD+G+TP NDG VIRL +P LT E R++L+K V K E
Sbjct: 65 LLVTPFDKSSLKDIERALNASDIGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVAVRNIRRDA+ +K +K K+++ED +K L D+QK+TD+ +K I+ + KEKELL+
Sbjct: 125 KVAVRNIRRDAMDEAKKREKAKEITEDELKTLEKDIQKVTDDAVKHINDMTANKEKELLE 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|257065047|ref|YP_003144719.1| ribosome recycling factor [Slackia heliotrinireducens DSM 20476]
gi|256792700|gb|ACV23370.1| ribosome recycling factor [Slackia heliotrinireducens DSM 20476]
Length = 184
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/178 (46%), Positives = 123/178 (69%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + M+ ID ++T F SVRTGR+N +LDKI V+YYG P + +A + P++ L +
Sbjct: 7 DAEIGMDEAIDNLKTAFASVRTGRANAMVLDKIRVDYYGVPTPINQMAAVKVPEAHMLTV 66
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+P+DKS L+++E AI++SDLG+TP+NDG VIRL P LT ERRKEL+K AEE ++A
Sbjct: 67 EPWDKSMLRAVEAAIMASDLGITPSNDGHVIRLPFPVLTEERRKELAKTCHTYAEECRIA 126
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RN+RR+A +K +K ++ ED+ + +QKLTD Y+KK+D + K KE E++ +
Sbjct: 127 IRNVRREANAKIDKGKKASEIPEDDARRGEEQVQKLTDSYVKKVDELLKAKEAEVMSI 184
>gi|366085842|ref|ZP_09452327.1| ribosome recycling factor [Lactobacillus zeae KCTC 3804]
Length = 185
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/176 (48%), Positives = 123/176 (69%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K M +T + ++ ++R GR+N ++L++I VEYYG+P L +A I P++ L I P
Sbjct: 10 KTNMGKTEESLQRELGNIRAGRANASLLNQITVEYYGAPTPLNQMAAITVPEARVLQISP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDKS+LK+IE AI +SDLG+ P NDG+VIRL +PQLT ERRKE++K V K +E K+AVR
Sbjct: 70 YDKSALKNIETAINASDLGINPANDGDVIRLVIPQLTGERRKEIAKEVGKFSENAKIAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRR+ L ++ +K+ ++ED + L D+QK+TDE K+ID I KEKE+ +V
Sbjct: 130 NIRREGLDKLKRQEKDGDITEDELHRLEKDMQKVTDEATKRIDDIAAAKEKEITEV 185
>gi|352518139|ref|YP_004887456.1| ribosome recycling factor [Tetragenococcus halophilus NBRC 12172]
gi|348602246|dbj|BAK95292.1| ribosome recycling factor [Tetragenococcus halophilus NBRC 12172]
Length = 185
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/176 (46%), Positives = 122/176 (69%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K ME+ D ++ +R GR+N ++LD++ V YYG P L +A I P++ L+I+P
Sbjct: 10 KENMEKATDNLQYQLGQIRAGRANASLLDRVNVVYYGVPTPLNQLASITIPEARVLMIKP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
+DK+ L+ IEK+I++SD+G+TP NDG V+RL +PQLT ERRKEL+K V K AE KV+VR
Sbjct: 70 FDKTMLQEIEKSILASDVGITPTNDGSVVRLVIPQLTEERRKELAKEVGKDAETAKVSVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N RR+A+ Y+K +K ++ED+++ D+Q LTD+ +K ID I KE ELL++
Sbjct: 130 NARREAMDEYKKQEKNSDITEDDLRTAEKDIQDLTDQNIKNIDDISSDKENELLEM 185
>gi|403745584|ref|ZP_10954379.1| ribosome recycling factor [Alicyclobacillus hesperidum URH17-3-68]
gi|403121302|gb|EJY55616.1| ribosome recycling factor [Alicyclobacillus hesperidum URH17-3-68]
Length = 185
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 86/178 (48%), Positives = 126/178 (70%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V+ RM++ + +R F SVR GR+ PAMLDK+ V+YYGS + + +A + TP+ L+I
Sbjct: 8 NVQERMDKAVQNLRREFASVRAGRATPAMLDKVLVDYYGSQMPVNQVASVTTPEPRLLVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
P++KS L IEKAI SDLG+ P+NDG VIRLT+P LT ERR+EL K V K AEE +VA
Sbjct: 68 SPWEKSMLSEIEKAIQKSDLGLNPSNDGTVIRLTVPALTEERRQELVKQVRKLAEEARVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RN+RRD +KL+K +SED V+ L +Q++TD+ + ++DS+ + KEK++ +V
Sbjct: 128 IRNVRRDGNDELKKLEKNGDVSEDEVRRLMDKIQQITDKCIAQVDSLLEDKEKDVTQV 185
>gi|220931612|ref|YP_002508520.1| ribosome recycling factor [Halothermothrix orenii H 168]
gi|254809515|sp|B8CW56.1|RRF_HALOH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|219992922|gb|ACL69525.1| ribosome recycling factor [Halothermothrix orenii H 168]
Length = 185
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/181 (43%), Positives = 136/181 (75%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
+EK+ K +ME+ ++ + + N+VRTGR+ P++++ I V+YYG+ ++ +A++ P++
Sbjct: 5 VEKNAKQKMEKVLEATKHDLNTVRTGRARPSLVENIMVDYYGTQTPIQQMAKVVAPEARQ 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L+I+P+DKS ++SIEKAI+ S+LG+ P+NDG VIR+ +PQLT ERRKEL KV ++AE+G
Sbjct: 65 LVIEPWDKSVIESIEKAILKSNLGLNPSNDGNVIRINIPQLTEERRKELVKVAHEKAEKG 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
++A+RNIRR+A ++++K ++SEDN +Q+LTD Y+ KID + + KE+++++
Sbjct: 125 RIAIRNIRREANDELKEMEKNSEISEDNYHRGLDMIQELTDTYIDKIDKMLEDKEQDIME 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|21230827|ref|NP_636744.1| ribosome recycling factor [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66769174|ref|YP_243936.1| ribosome recycling factor [Xanthomonas campestris pv. campestris
str. 8004]
gi|188992321|ref|YP_001904331.1| ribosome recycling factor [Xanthomonas campestris pv. campestris
str. B100]
gi|24418655|sp|Q8PAV6.1|RRF_XANCP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|81304866|sp|Q4USQ7.1|RRF_XANC8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|229890170|sp|B0RW69.1|RRF_XANCB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|21112430|gb|AAM40668.1| ribosome recycling factor [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66574506|gb|AAY49916.1| ribosome recycling factor [Xanthomonas campestris pv. campestris
str. 8004]
gi|167734081|emb|CAP52287.1| unnamed protein product [Xanthomonas campestris pv. campestris]
Length = 185
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 128/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I++D + RM ++ID +R + +VRTGR++PA+LD I+V+ YG+ L +A I+ +
Sbjct: 3 NQIKQDAQTRMTKSIDALRHSLTTVRTGRASPALLDNIKVKAYGTDTPLNQVASISVSEG 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
SL+I +DK +K +EKAI +SDLG+TP G VIRL LP LT ERRKELSK V + E
Sbjct: 63 RSLVISLFDKGMIKDVEKAIYASDLGLTPTVVGTVIRLNLPPLTEERRKELSKSVHGEGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+ KVA+RNIRRDA + + L K+K+++ED + D+QKLTD+ +K +D + K KE+EL
Sbjct: 123 DAKVAIRNIRRDANQQVKDLLKDKQVTEDEARGAEDDIQKLTDKAIKDVDEVVKGKEQEL 182
Query: 274 LKV 276
+ V
Sbjct: 183 MTV 185
>gi|335030201|ref|ZP_08523696.1| ribosome recycling factor [Streptococcus infantis SK1076]
gi|334266781|gb|EGL85252.1| ribosome recycling factor [Streptococcus infantis SK1076]
Length = 185
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/183 (48%), Positives = 125/183 (68%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K RM ++ + F +R GR+N ++LD+I VEYYG L IA I P++
Sbjct: 3 NAIVEKAKERMTQSHHSLAREFGGIRAGRANASLLDRITVEYYGVETPLNQIASITIPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K E
Sbjct: 63 RVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
KVA+RNIRRDA+ +K +K K+++ED +K L D+QK TD+ +K ID + KEKE+
Sbjct: 123 NAKVAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKATDDAVKYIDEMTANKEKEI 182
Query: 274 LKV 276
L+V
Sbjct: 183 LEV 185
>gi|210615979|ref|ZP_03290879.1| hypothetical protein CLONEX_03098 [Clostridium nexile DSM 1787]
gi|210149984|gb|EEA80993.1| hypothetical protein CLONEX_03098 [Clostridium nexile DSM 1787]
Length = 185
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 124/174 (71%), Gaps = 1/174 (0%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++T+ + ++R GR+NP +LDK+ V+YYGS ++ +A I+ P++ + IQP++
Sbjct: 13 KMQKTLHSLDAELATIRAGRANPHILDKLTVDYYGSATPIQQVANISVPEARMIQIQPWE 72
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS +K IEKAI++SD+G+ P NDG VIRL P+LT ERRKEL K V K+ E KVAVRNI
Sbjct: 73 KSMVKEIEKAILTSDIGINPTNDGTVIRLVFPELTEERRKELVKDVKKKGEAAKVAVRNI 132
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD A++KL K +SED +K L +LQKLTD+Y+K++D + K KE+L V
Sbjct: 133 RRDGNDAFKKL-KGSDVSEDEIKGLEEELQKLTDKYIKEVDKSVEAKSKEVLTV 185
>gi|373499225|ref|ZP_09589716.1| ribosome-recycling factor [Fusobacterium sp. 12_1B]
gi|404369363|ref|ZP_10974703.1| ribosome-recycling factor [Fusobacterium ulcerans ATCC 49185]
gi|313690747|gb|EFS27582.1| ribosome-recycling factor [Fusobacterium ulcerans ATCC 49185]
gi|371959296|gb|EHO76987.1| ribosome-recycling factor [Fusobacterium sp. 12_1B]
Length = 188
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 128/176 (72%), Gaps = 2/176 (1%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M + I+ + F S+R GR++ +MLD ++VE YGS + L + ++ P++ L+I P+D
Sbjct: 13 KMGKAIEATKHKFTSIRAGRASVSMLDSVKVEQYGSDMPLNQVGSVSAPEARLLVIDPWD 72
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS + IEKAI++++LG+TPNNDG+VIRL +P+LT+ERRKE K+ +AE GKVAVRNI
Sbjct: 73 KSLISKIEKAIMAANLGLTPNNDGKVIRLVMPELTAERRKEYVKMAKTEAENGKVAVRNI 132
Query: 223 RRDALKAYEKLQKEKK--LSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
R+D +KL K+K+ +SED VK L +++QKLTD ++K ID ++ +KEKE+ V
Sbjct: 133 RKDGNNDLKKLSKDKESPISEDEVKTLEAEIQKLTDAHIKAIDDLFAKKEKEITTV 188
>gi|256003336|ref|ZP_05428327.1| ribosome recycling factor [Clostridium thermocellum DSM 2360]
gi|281417721|ref|ZP_06248741.1| ribosome recycling factor [Clostridium thermocellum JW20]
gi|385778562|ref|YP_005687727.1| ribosome recycling factor [Clostridium thermocellum DSM 1313]
gi|419723610|ref|ZP_14250725.1| Ribosome-recycling factor [Clostridium thermocellum AD2]
gi|419724565|ref|ZP_14251627.1| Ribosome-recycling factor [Clostridium thermocellum YS]
gi|255992626|gb|EEU02717.1| ribosome recycling factor [Clostridium thermocellum DSM 2360]
gi|281409123|gb|EFB39381.1| ribosome recycling factor [Clostridium thermocellum JW20]
gi|316940242|gb|ADU74276.1| ribosome recycling factor [Clostridium thermocellum DSM 1313]
gi|380772112|gb|EIC05970.1| Ribosome-recycling factor [Clostridium thermocellum YS]
gi|380780292|gb|EIC09975.1| Ribosome-recycling factor [Clostridium thermocellum AD2]
Length = 183
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 128/179 (71%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+++ +M++T+ +++ N+VR GR+N A+LD+I V+YYG P + + I+ P+ ++
Sbjct: 5 KNIEEKMKKTVSVLKDELNTVRAGRANAAILDRITVDYYGVPTPINQLGTISVPEPRVIV 64
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D LK IEK I SD+G+ PNNDG+VIRL P LT ERRKEL+K+ K E+ KV
Sbjct: 65 IQPWDAQILKEIEKEIQKSDIGINPNNDGKVIRLVFPPLTEERRKELTKLAKKYGEDAKV 124
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+R+IRRD ++ + ++K +++ED++K D+Q LTD+Y+ +ID + + KEKE+L+V
Sbjct: 125 AIRSIRRDGIEKMKAMKKNGEITEDDLKSAEKDIQNLTDKYIAEIDKLIEIKEKEILEV 183
>gi|212710394|ref|ZP_03318522.1| hypothetical protein PROVALCAL_01454 [Providencia alcalifaciens DSM
30120]
gi|422020035|ref|ZP_16366577.1| ribosome recycling factor [Providencia alcalifaciens Dmel2]
gi|212686976|gb|EEB46504.1| hypothetical protein PROVALCAL_01454 [Providencia alcalifaciens DSM
30120]
gi|414102659|gb|EKT64251.1| ribosome recycling factor [Providencia alcalifaciens Dmel2]
Length = 185
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/180 (47%), Positives = 130/180 (72%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I+KD + RME++++ +++ + VRTGR++P++LD I VEYYGS L+ +A + DS +
Sbjct: 5 IQKDAQDRMEKSLESLKSQISKVRTGRASPSLLDGITVEYYGSATPLRQLANVTVEDSRT 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L I +D+S +IEKAI++SDLG+ P++ G VIR+ LP LT ERRK+L KVV AE+G
Sbjct: 65 LAISVFDRSMSPAIEKAIMASDLGLNPSSAGTVIRVPLPPLTEERRKDLIKVVRGDAEQG 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
++A+RN+RRDA + L K+K++SED+ + D+QKLTD ++KK+D QKE EL++
Sbjct: 125 RIAIRNVRRDANDKVKALLKDKEISEDDERRSQDDIQKLTDHFIKKVDEALAQKEAELME 184
>gi|166031004|ref|ZP_02233833.1| hypothetical protein DORFOR_00685 [Dorea formicigenerans ATCC
27755]
gi|166029271|gb|EDR48028.1| ribosome recycling factor [Dorea formicigenerans ATCC 27755]
Length = 183
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 126/174 (72%), Gaps = 1/174 (0%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++T+D + + ++R GR+NP +L++I V+YYG+P ++ +A ++ P+ + IQP++
Sbjct: 11 KMQKTMDSLDSEMGTIRAGRANPNVLNRIMVDYYGTPTPIQQVANVSVPEPRMIQIQPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS LK IEKAI+ SDLG+ P NDG +RL P+LT ERRKEL K V K+ E KVA+RNI
Sbjct: 71 KSMLKVIEKAIMVSDLGINPTNDGTAVRLIFPELTEERRKELVKDVKKKGEAAKVAIRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD A++KL K +SED +K+L +LQK+TD+Y+K+IDS + K KE++ V
Sbjct: 131 RRDGNDAFKKL-KGSDVSEDEIKNLEDELQKMTDKYVKEIDSAVEVKSKEVMTV 183
>gi|296110369|ref|YP_003620750.1| ribosome recycling factor [Leuconostoc kimchii IMSNU 11154]
gi|339490477|ref|YP_004704982.1| ribosome recycling factor [Leuconostoc sp. C2]
gi|295831900|gb|ADG39781.1| ribosome recycling factor [Leuconostoc kimchii IMSNU 11154]
gi|338852149|gb|AEJ30359.1| ribosome recycling factor [Leuconostoc sp. C2]
Length = 181
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 86/178 (48%), Positives = 126/178 (70%), Gaps = 3/178 (1%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D KARM+ D ++ S+RTGR+NP +LD+IEVEYYG+ L +A I+ P++ L+I
Sbjct: 7 DAKARMQGAQDALQRELGSIRTGRANPHILDRIEVEYYGAMTPLNQVASISVPEARILMI 66
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
P+DK+ L+ I +AI SDLG+ P +DG ++RL +PQ+T E RK+L K V +AE+ KV+
Sbjct: 67 TPFDKTVLEEIIRAINISDLGLNPASDGNIVRLAIPQMTEEGRKDLVKQVKAEAEKAKVS 126
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRN+RRDA+ + ++K+K+L ED+ + D+QKLTDE +K ID+I KEKELL +
Sbjct: 127 VRNVRRDAM---DSVKKDKELPEDDARHAEDDVQKLTDENIKAIDTIASDKEKELLTI 181
>gi|119774279|ref|YP_927019.1| ribosome recycling factor [Shewanella amazonensis SB2B]
gi|166231223|sp|A1S4P3.1|RRF_SHEAM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|119766779|gb|ABL99349.1| ribosome recycling factor [Shewanella amazonensis SB2B]
Length = 185
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/181 (44%), Positives = 131/181 (72%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I+KD + RM + ++ + VRTGR++P++LD I+V YYGS LK + + DS +
Sbjct: 5 IKKDAQDRMGKCVEATKAQMAKVRTGRAHPSLLDTIQVNYYGSMTPLKQVGNVTIEDSRT 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L + +D+S+++++EKAI+SSDLG+ P + G IR+ LP LT ERR++L KVV +AE+G
Sbjct: 65 LAVNVFDRSAIQAVEKAIMSSDLGLNPMSAGATIRIPLPPLTEERRRDLVKVVRAEAEQG 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
+VA+RN+RRDA ++++L+KEK+ +ED+V+ ++QK+TD ++KKID + KE EL++
Sbjct: 125 RVAIRNVRRDANSSFKQLEKEKECTEDDVRRSEEEVQKITDLHIKKIDELLAAKEAELME 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|310779561|ref|YP_003967894.1| ribosome recycling factor [Ilyobacter polytropus DSM 2926]
gi|309748884|gb|ADO83546.1| ribosome recycling factor [Ilyobacter polytropus DSM 2926]
Length = 186
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/181 (45%), Positives = 128/181 (70%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I D + +M++ I+ + F S+R GR+N +MLD I+VE YGS + L +A ++ P++
Sbjct: 6 IMNDCREKMDKAIESTKHKFASIRAGRANVSMLDGIKVEQYGSEMPLNQVANVSAPEARL 65
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L+I P+DKS ++ IEK I+ S+LG+TPNNDG+VIRL +P+LT+ERRKE K+ +AE G
Sbjct: 66 LVIDPWDKSIIQKIEKTIMLSNLGLTPNNDGKVIRLQIPELTAERRKEYVKLAKTEAENG 125
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
K+A+RNIR+DA +L+K+ +++D +K D QK+TD ++K +D + K+KEKE+
Sbjct: 126 KIAIRNIRKDANNHLRRLEKDGDITQDELKSFEDDTQKITDNHIKLVDELLKKKEKEITT 185
Query: 276 V 276
V
Sbjct: 186 V 186
>gi|451334967|ref|ZP_21905537.1| Ribosome recycling factor [Amycolatopsis azurea DSM 43854]
gi|449422506|gb|EMD27880.1| Ribosome recycling factor [Amycolatopsis azurea DSM 43854]
Length = 185
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/178 (44%), Positives = 124/178 (69%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + +ME+ + + + + +SVRTGR++P M ++ V+YYG+P L +A +N P++ LI
Sbjct: 8 DAEEKMEKAVSVAKEDLSSVRTGRAHPGMFSRVVVDYYGAPTPLNQLAGVNIPEARMALI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+PYD++SL +IEKAI SDLG+ P+NDG VIR+ +PQLT ERRKE+ KV + E+ +V+
Sbjct: 68 KPYDQTSLNAIEKAIRESDLGVNPSNDGNVIRIVIPQLTEERRKEMVKVAKSKGEDARVS 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+R++RR A + ++++K+ + ED V +LQ LTD Y K+D + K KE ELL+V
Sbjct: 128 IRSVRRKAKEELDRIKKDGEAGEDEVVHAEKELQNLTDSYTHKVDELVKHKEAELLEV 185
>gi|125625049|ref|YP_001033532.1| ribosome recycling factor [Lactococcus lactis subsp. cremoris
MG1363]
gi|389855433|ref|YP_006357677.1| ribosome recycling factor [Lactococcus lactis subsp. cremoris
NZ9000]
gi|166230795|sp|A2RNG1.1|RRF_LACLM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|124493857|emb|CAL98850.1| Frr protein [Lactococcus lactis subsp. cremoris MG1363]
gi|300071855|gb|ADJ61255.1| ribosome recycling factor [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 185
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 125/174 (71%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM+ ++ ++ + +R GR+N ++LD+++V YYG+P L +A I P++ L++ P+D
Sbjct: 12 RMKHSLASLQRDLGHLRAGRANASLLDRVQVVYYGAPTPLNQLASITIPEARVLMVTPFD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS LK IEKA+ SDLG+TP NDG VIRL +P LT ERR+EL K + K E KVA+RNI
Sbjct: 72 KSILKDIEKALYESDLGITPANDGSVIRLVIPMLTEERRRELVKEMGKYIESAKVAIRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA+ +K +K K+++ED++KDL +++QK+TD+ +K+ D + KEKELL +
Sbjct: 132 RRDAMDTAKKSEKAKEITEDDLKDLENEIQKVTDDAVKEADRLASVKEKELLDI 185
>gi|302525191|ref|ZP_07277533.1| ribosome recycling factor [Streptomyces sp. AA4]
gi|302434086|gb|EFL05902.1| ribosome recycling factor [Streptomyces sp. AA4]
Length = 185
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 123/178 (69%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + +ME+ + + + + SVRTGR++P+M +I VEYYG+P L +A +N P++ LI
Sbjct: 8 DAEEKMEKAVSVAKEDLTSVRTGRAHPSMFSRIVVEYYGAPTPLNQLASVNVPEARMALI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+PYD++ L +IEKAI SDLG+ P+NDG VIR+ +PQLT ERRKE+ KV + E+ +V+
Sbjct: 68 KPYDQTQLNAIEKAIRESDLGVNPSNDGNVIRIVIPQLTEERRKEMVKVAKGKGEDARVS 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+R+IRR A + +++ K+ + ED V +LQ LTD Y+ ++D + K KE ELL+V
Sbjct: 128 IRSIRRKAKEELDRIAKDGEAGEDEVARAEKELQNLTDTYVHQVDELVKHKEAELLEV 185
>gi|331269638|ref|YP_004396130.1| ribosome recycling factor [Clostridium botulinum BKT015925]
gi|329126188|gb|AEB76133.1| ribosome recycling factor [Clostridium botulinum BKT015925]
Length = 185
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 128/174 (73%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++TI +++ +S++ G++NPAMLDKI+VEYYGS + +A +++P+ LLIQP+D
Sbjct: 12 KMDKTISVLKKELSSMKAGKANPAMLDKIKVEYYGSETPINQLANVSSPEPRVLLIQPWD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+SLK IE+AI+ SDLG+ P+NDG VIRL +P+LT E RKE+ K V K EE KVA+R+I
Sbjct: 72 KNSLKDIERAILQSDLGLNPSNDGSVIRLIVPELTEETRKEIVKKVKKMGEEAKVAIRSI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA + L+K+ +++ED K+ +QK+TD+ +K+ID + KE +++ +
Sbjct: 132 RRDANDKIKNLKKDNEVTEDEAKEGEDSVQKITDKAIKQIDEVISSKENDVMSI 185
>gi|294783615|ref|ZP_06748939.1| ribosome recycling factor [Fusobacterium sp. 1_1_41FAA]
gi|294480493|gb|EFG28270.1| ribosome recycling factor [Fusobacterium sp. 1_1_41FAA]
Length = 190
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/181 (47%), Positives = 131/181 (72%), Gaps = 2/181 (1%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+ + +M +TI+ V+ F S+R GR+N AMLD ++VE YGS V L + ++ P++ L+
Sbjct: 10 KECEEKMLKTIEAVKERFTSIRAGRANVAMLDAVKVENYGSEVPLNQVGTVSAPEARLLV 69
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I P+DK+ + IEKA+++++LGMTPNNDG VIRL LP+LT++RRKE K+ +AE GK+
Sbjct: 70 IDPWDKTLIPKIEKALLAANLGMTPNNDGRVIRLVLPELTADRRKEYVKLAKNEAENGKI 129
Query: 218 AVRNIRRDALKAYEKLQKEKK--LSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
AVRNIR+D +KL+K+K+ +SED +K + +Q LTD+Y+K+ID + +KEKE+
Sbjct: 130 AVRNIRKDINNHLKKLEKDKENPISEDELKKEETHVQTLTDKYIKEIDELLAKKEKEITT 189
Query: 276 V 276
V
Sbjct: 190 V 190
>gi|380513320|ref|ZP_09856727.1| ribosome recycling factor [Xanthomonas sacchari NCPPB 4393]
Length = 185
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/181 (46%), Positives = 127/181 (70%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I++D + RM ++ID +R VRTGR++ A+++ ++V YYGS + L +A + D+ S
Sbjct: 5 IKQDAQTRMAKSIDALRHALIKVRTGRASTALVEHLKVNYYGSDMPLSQVASVAVADARS 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L I P++K + ++EKAI++SDLG+TPN G IRL LP LT ERR+ELSKVV + E+
Sbjct: 65 LTITPWEKQMVGAVEKAILASDLGLTPNTAGTTIRLNLPALTEERRRELSKVVHGEGEDT 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVA+RNIRRDA + + L K+KK++ED + D+QKLTD+ +K +D + K KE+EL+
Sbjct: 125 KVAIRNIRRDANQQVKDLLKDKKVTEDEARASEDDIQKLTDKAIKDVDDVVKGKEQELMA 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|257869600|ref|ZP_05649253.1| ribosome recycling factor [Enterococcus gallinarum EG2]
gi|357050796|ref|ZP_09111992.1| ribosome-recycling factor [Enterococcus saccharolyticus 30_1]
gi|257803764|gb|EEV32586.1| ribosome recycling factor [Enterococcus gallinarum EG2]
gi|355380421|gb|EHG27557.1| ribosome-recycling factor [Enterococcus saccharolyticus 30_1]
Length = 185
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/178 (46%), Positives = 127/178 (71%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ K +M++ + ++ +R GR+N ++LD++ V YYG P L +A I P++ L+I
Sbjct: 8 EAKDKMKKAAENLQRELGQIRAGRANASILDRVMVTYYGVPTPLNQMASITIPEARILMI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
P+DK+ ++ +EKAI+ SD+G+TP NDG VIRL +PQLT ERRKEL+K V K+AE K+A
Sbjct: 68 TPFDKTMIQEVEKAIMQSDIGITPANDGTVIRLVIPQLTEERRKELAKDVKKEAENAKIA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRNIRRDA+ AY+K +K ++ D++++ ++Q LTD +K+ID I +KE+ELL+V
Sbjct: 128 VRNIRRDAMDAYKKQEKSGDITVDDLRESEKEVQTLTDNSIKEIDQIAAEKEQELLEV 185
>gi|381210017|ref|ZP_09917088.1| ribosome recycling factor [Lentibacillus sp. Grbi]
Length = 185
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/181 (47%), Positives = 128/181 (70%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I KD +++ME+ + N ++R GR+NPA+LD + V+YYG+ L +A I+ P++
Sbjct: 5 IIKDTRSKMEQAVQAFSKNLATIRAGRANPAILDSVIVDYYGAATPLNQLATISAPEARL 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L+I P+DKSS+ +IEKAI +DLG++P++DG VIR+ +P LT ERRK+L KVV K AEE
Sbjct: 65 LVITPFDKSSVSNIEKAIQKADLGLSPSSDGNVIRINIPALTEERRKDLVKVVGKYAEEA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
+V VRN+RR+A +KL+K L+ED++K ++QK TD+ + KID K KEKE+L+
Sbjct: 125 RVQVRNVRREANDQLKKLEKNGDLTEDDLKKQQENVQKETDKQINKIDEYVKNKEKEILE 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|291296165|ref|YP_003507563.1| ribosome recycling factor [Meiothermus ruber DSM 1279]
gi|290471124|gb|ADD28543.1| ribosome recycling factor [Meiothermus ruber DSM 1279]
Length = 185
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 130/177 (73%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ + M+++++ + + ++RTGR+NPA+L+ I+VEYYGS + L + +++PD +L++
Sbjct: 8 ETRQHMQKSLEALEHHLTTMRTGRANPAILNNIKVEYYGSTMPLNQVGTVSSPDPRTLVV 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
Q +D + LK IEKAI SDLG+ P N G+ + +++P LT ERR++L K V + AEE ++A
Sbjct: 68 QSWDPNMLKEIEKAIRDSDLGLNPTNKGDALYISIPPLTEERRRDLVKSVKQYAEEARIA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
VRNIRR+AL +KL+KEK LSED++K +++QK+TDE++ KID +KE+E+LK
Sbjct: 128 VRNIRREALDKAKKLEKEKHLSEDDIKRAEAEIQKITDEFVHKIDEALHKKEQEILK 184
>gi|46198814|ref|YP_004481.1| ribosome recycling factor [Thermus thermophilus HB27]
gi|55980827|ref|YP_144124.1| ribosome recycling factor [Thermus thermophilus HB8]
gi|6831652|sp|Q9WX76.1|RRF_THET8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|60390719|sp|Q72KE0.1|RRF_THET2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|11513707|pdb|1EH1|A Chain A, Ribosome Recycling Factor From Thermus Thermophilus
gi|157836509|pdb|2V46|Y Chain Y, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 1 Of 4). This File Contains The 30s
Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For
Molecule 1.
gi|157836565|pdb|2V48|Y Chain Y, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 3 Of 4). This File Contains The 30s
Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For
Molecule 2.
gi|158429965|pdb|2QBE|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 50s Subunit Of The
First 70s Ribosome, With Rrf Bound. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
gi|158430018|pdb|2QBG|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 50s Subunit Of The
Second 70s Ribosome, With Rrf Bound. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
gi|158430071|pdb|2QBI|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 50s
Subunit Of The First 70s Ribosome, With Gentamicin And
Rrf Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
gi|158430124|pdb|2QBK|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 50s
Subunit Of The Second 70s Ribosome, With Gentamicin And
Rrf Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
gi|158431424|pdb|2Z4L|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
50s Subunit Of The First 70s Ribosome, With Paromomycin
And Rrf Bound. The Entire Crystal Structure Contains Two
70s Ribosomes And Is Described In Remark 400.
gi|158431477|pdb|2Z4N|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
50s Subunit Of The Second 70s Ribosome, With Paromomycin
And Rrf Bound. The Entire Crystal Structure Contains Two
70s Ribosomes And Is Described In Remark 400.
gi|385251648|pdb|3J0D|J Chain J, Models For The T. Thermophilus Ribosome Recycling Factor
Bound To The E. Coli Post-Termination Complex
gi|385251656|pdb|3J0E|G Chain G, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
gi|4589668|dbj|BAA76865.1| frr [Thermus thermophilus]
gi|46196437|gb|AAS80854.1| ribosome recycling factor (rrf) [Thermus thermophilus HB27]
gi|55772240|dbj|BAD70681.1| ribosome recycling factor (Rrf) [Thermus thermophilus HB8]
Length = 185
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/190 (44%), Positives = 135/190 (71%), Gaps = 7/190 (3%)
Query: 85 TIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKS 144
T++E+ AE ++ M+++++++ N +RTGR+NPA+L ++VEYYG+ V L
Sbjct: 2 TLKELYAE-------TRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQ 54
Query: 145 IAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKEL 204
IA + PD +L++Q +D+++LK+IEKAI SDLG+ P+N G+ + + +P LT ERRK+L
Sbjct: 55 IATVTAPDPRTLVVQSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDL 114
Query: 205 SKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 264
+ V + AEEG+VA+RNIRR+AL +KL KE LSED K +++QK+TDE++ K D
Sbjct: 115 VRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQ 174
Query: 265 IYKQKEKELL 274
+ ++KE+E+L
Sbjct: 175 LAEKKEQEIL 184
>gi|304436535|ref|ZP_07396508.1| ribosome recycling factor [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304370478|gb|EFM24130.1| ribosome recycling factor [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 185
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/173 (48%), Positives = 125/173 (72%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M + I+ +R F+S+R GR+ P +LDKI V YYG+P S+ +A++ P+ ++I P++K
Sbjct: 13 MSKAIEALRREFSSLRAGRATPNLLDKIMVPYYGTPTSVNQLAKVTVPEPHMIVITPWEK 72
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
S L IE AI SDLG++PN+DG VIRL +PQ T ERRKEL K V K+ EE KVA+RNIR
Sbjct: 73 SILHEIEIAISKSDLGLSPNSDGNVIRLAIPQPTQERRKELIKTVGKKTEEAKVALRNIR 132
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RDA +A +KL+K+K+++ED K +QKL D+++K++D + KEKE++++
Sbjct: 133 RDANEAIKKLEKDKEINEDESKRGQDSVQKLVDKFVKQMDEMRAAKEKEVMEI 185
>gi|302389812|ref|YP_003825633.1| ribosome recycling factor [Thermosediminibacter oceani DSM 16646]
gi|302200440|gb|ADL08010.1| ribosome recycling factor [Thermosediminibacter oceani DSM 16646]
Length = 185
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/181 (46%), Positives = 132/181 (72%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I K+ + RM++ + +++ ++R GR++ A+L+K+ V+YYG P + +A ++ P+
Sbjct: 5 IYKETEERMKKVLGNLKSELAAIRAGRASTALLEKVFVDYYGVPTPVNQVATVSVPEPRM 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
+LIQP+D L +IEKAI+ SDLG+TP +DG+VIRL LP+LTSERRKEL K+ K+AE+
Sbjct: 65 ILIQPWDVKMLSAIEKAILKSDLGLTPTSDGKVIRLILPELTSERRKELVKMAKKKAEDA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KV VRNIRRDA + +K++K ++SED+ K ++QKLTD Y+++ID + KEKE+++
Sbjct: 125 KVLVRNIRRDANELVKKMEKNGEISEDDSKRSQEEIQKLTDNYIEEIDKAFTNKEKEIME 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|357417810|ref|YP_004930830.1| ribosome recycling factor [Pseudoxanthomonas spadix BD-a59]
gi|355335388|gb|AER56789.1| ribosome recycling factor [Pseudoxanthomonas spadix BD-a59]
Length = 185
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/183 (45%), Positives = 129/183 (70%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I+KD +ARM ++I+ +R + +RTGR+ A++D ++V YYGS + L +A + D+
Sbjct: 3 NDIKKDAQARMNKSIESLRHDLTKLRTGRATTALVDHLKVNYYGSDMPLTQVASVVVSDA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
SL I P++K + ++EKAI+ SDLG+TPN G VIR+ +P LT ERR++LSKVV E
Sbjct: 63 RSLTITPWEKQMVSAVEKAILGSDLGLTPNTAGTVIRINIPALTEERRRDLSKVVHANGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+ KVA+RNIRRDA + + L KEK+++ED V+ ++QK+TD+ +K +D + K KE+EL
Sbjct: 123 DAKVAIRNIRRDANQQIKDLLKEKEVTEDEVRRAEEEIQKITDKAIKDVDEVVKAKEQEL 182
Query: 274 LKV 276
+ V
Sbjct: 183 MAV 185
>gi|311105986|ref|YP_003978839.1| ribosome recycling factor [Achromobacter xylosoxidans A8]
gi|310760675|gb|ADP16124.1| ribosome recycling factor [Achromobacter xylosoxidans A8]
Length = 186
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/183 (45%), Positives = 130/183 (71%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I K +ARM +++D ++TN +RTGR++ +LD ++VEYYGSPV + + +N D+
Sbjct: 4 AEIRKSAEARMAKSLDTLKTNLAKIRTGRAHTGILDHVQVEYYGSPVPISQVGNVNLVDA 63
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
++ +QPY+KS +IEKAI SDLG+ P + G+ IR+ +P LT ERR++L+KVV + E
Sbjct: 64 RTISVQPYEKSMAAAIEKAIRESDLGLNPMSMGDTIRVPMPALTEERRRDLTKVVRSEGE 123
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+ KVAVRN+RR+A +A +KL K+K++SED+ + D+QKLTD + +ID + QKE E+
Sbjct: 124 DAKVAVRNLRREANEALKKLVKDKEISEDDERRSQDDVQKLTDRSVAEIDKMVTQKEAEI 183
Query: 274 LKV 276
+ V
Sbjct: 184 MTV 186
>gi|325913951|ref|ZP_08176307.1| ribosome recycling factor [Xanthomonas vesicatoria ATCC 35937]
gi|325539720|gb|EGD11360.1| ribosome recycling factor [Xanthomonas vesicatoria ATCC 35937]
Length = 185
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/181 (48%), Positives = 127/181 (70%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I++D + RM ++ID +R + +VRTGR++PA+LD I+V+ YG+ L +A I+ + S
Sbjct: 5 IKQDAQTRMTKSIDALRHSLTTVRTGRASPALLDGIKVKAYGTDTPLNQVASISVSEGRS 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L+I +DK +K +EKA+ +SDLG+TP G VIRL LP LT ERRKELSK V + E+
Sbjct: 65 LVISLFDKGMIKDVEKALYASDLGLTPTVVGTVIRLNLPPLTEERRKELSKSVHGEGEDS 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVA+RNIRRDA + + L K+KK++ED + D+QKLTD+ +K +D + K KE+EL+
Sbjct: 125 KVAIRNIRRDANQQVKDLLKDKKVTEDEARGAEDDIQKLTDKAIKDVDEVVKGKEQELMT 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|319946529|ref|ZP_08020764.1| ribosome recycling factor [Streptococcus australis ATCC 700641]
gi|417920041|ref|ZP_12563559.1| ribosome recycling factor [Streptococcus australis ATCC 700641]
gi|319747275|gb|EFV99533.1| ribosome recycling factor [Streptococcus australis ATCC 700641]
gi|342831148|gb|EGU65471.1| ribosome recycling factor [Streptococcus australis ATCC 700641]
Length = 185
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/176 (49%), Positives = 122/176 (69%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K RM ++ + F S+R GR+N ++LD+I V+YYG L IA I P++ +LI P
Sbjct: 10 KERMSQSHQSLGREFGSIRAGRANASLLDRIYVQYYGVDTPLNQIASITIPEARVMLITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
+DKSSLK IE A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K E KVA+R
Sbjct: 70 FDKSSLKDIEHALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAIR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRRDA+ +K +K K+++ED +K L ++QK+TD+ +K ID + KEKELL+V
Sbjct: 130 NIRRDAMDEAKKQEKAKEITEDELKGLEKEIQKVTDDAVKHIDEMTAHKEKELLEV 185
>gi|168335176|ref|ZP_02693282.1| ribosome recycling factor [Epulopiscium sp. 'N.t. morphotype B']
Length = 180
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/179 (46%), Positives = 128/179 (71%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K + +ME++I ++ +FN++R GR+NP +LDKI V+YYG+ +K + I P++ L
Sbjct: 2 KKFEDKMEKSILSLKEDFNTIRAGRANPNVLDKIVVDYYGTLTPIKQVGNIVVPEARILQ 61
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D S LK IEKAI SD+G+ P+NDG+VIRL P+LT ERRKEL+K + K+ E KV
Sbjct: 62 IQPWDSSLLKGIEKAINESDIGINPSNDGKVIRLVFPELTQERRKELTKEIKKKGENAKV 121
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RNIRR+A+ +++K QK +++ED + +QKLTD+++ +ID + +QK E+L V
Sbjct: 122 AIRNIRREAMDSFKKQQKANEITEDEQTTNENSVQKLTDKFVAEIDKLIEQKSSEVLSV 180
>gi|444377206|ref|ZP_21176439.1| Ribosome recycling factor [Enterovibrio sp. AK16]
gi|443678671|gb|ELT85338.1| Ribosome recycling factor [Enterovibrio sp. AK16]
Length = 185
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/181 (48%), Positives = 129/181 (71%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I D K RM+++++ ++ + +RTGR++PA+LD + V+YYGS LK +A I D+ +
Sbjct: 5 INADAKERMQKSVEALKNTLSKIRTGRAHPALLDGLSVDYYGSATPLKQLASIVAEDART 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L I +DKS ++IEKAI++SDLG+ P + G VIR+ LP LT ERR++L K+V +AE G
Sbjct: 65 LAITVFDKSVTQAIEKAIMTSDLGLNPMSAGTVIRVPLPPLTEERRRDLVKIVRGEAEGG 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
+VAVRNIRRDA + L KEK++SED + D+QKLTD +K+ID+I + KEKEL++
Sbjct: 125 RVAVRNIRRDANSDLKGLLKEKEISEDEERRGQDDIQKLTDAAVKEIDTILEAKEKELME 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|58581596|ref|YP_200612.1| ribosome recycling factor [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|84623520|ref|YP_450892.1| ribosome recycling factor [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188577166|ref|YP_001914095.1| ribosome recycling factor [Xanthomonas oryzae pv. oryzae PXO99A]
gi|384419979|ref|YP_005629339.1| ribosome recycling factor [Xanthomonas oryzae pv. oryzicola BLS256]
gi|62900777|sp|Q5H1E4.1|RRF_XANOR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|123522271|sp|Q2P4A9.1|RRF_XANOM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|238689544|sp|B2SR02.1|RRF_XANOP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|58426190|gb|AAW75227.1| ribosome recycling factor [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|84367460|dbj|BAE68618.1| ribosome recycling factor [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188521618|gb|ACD59563.1| ribosome recycling factor [Xanthomonas oryzae pv. oryzae PXO99A]
gi|353462892|gb|AEQ97171.1| ribosome recycling factor [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 185
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 127/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I++D + RM ++ID +R + +VRTGR++PA+LD I+V+ YG+ L +A I+ +
Sbjct: 3 TQIKQDAQTRMTKSIDALRHSLTTVRTGRASPALLDGIKVKAYGTDTPLNQVASISVSEG 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
SL+I +DK +K +EKAI +SDLG+TP G VIRL LP LT ERRKELSK V + E
Sbjct: 63 RSLVISLFDKGMIKDVEKAIYASDLGLTPTVVGTVIRLNLPPLTEERRKELSKSVHGEGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+ KVA+RNIRRDA + + L K+K ++ED + D+QKLTD+ +K +D + K KE+EL
Sbjct: 123 DSKVAIRNIRRDANQQVKDLLKDKAVTEDEARGAEDDIQKLTDKAIKDVDEVVKAKEQEL 182
Query: 274 LKV 276
+ V
Sbjct: 183 MTV 185
>gi|116327676|ref|YP_797396.1| ribosome recycling factor [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116330591|ref|YP_800309.1| ribosome recycling factor [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|418721009|ref|ZP_13280197.1| ribosome recycling factor [Leptospira borgpetersenii str. UI 09149]
gi|418734913|ref|ZP_13291325.1| ribosome recycling factor [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|421095964|ref|ZP_15556672.1| ribosome recycling factor [Leptospira borgpetersenii str.
200801926]
gi|122281654|sp|Q04U69.1|RRF_LEPBJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|122284528|sp|Q053N2.1|RRF_LEPBL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|116120420|gb|ABJ78463.1| Ribosome recycling factor [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116124280|gb|ABJ75551.1| Ribosome recycling factor [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|410361379|gb|EKP12424.1| ribosome recycling factor [Leptospira borgpetersenii str.
200801926]
gi|410742488|gb|EKQ91236.1| ribosome recycling factor [Leptospira borgpetersenii str. UI 09149]
gi|410749169|gb|EKR02061.1| ribosome recycling factor [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|456890839|gb|EMG01623.1| ribosome recycling factor [Leptospira borgpetersenii str.
200701203]
Length = 184
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 129/178 (72%), Gaps = 4/178 (2%)
Query: 100 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQ 159
+K +M++TID+V+ +F +VRTGR+NP++++ I V+YYG+ + + I+ P+ L+I
Sbjct: 10 MKTKMDKTIDLVKKDFGTVRTGRANPSLVEDIRVDYYGTLTPINQLGNISVPEPRMLVIS 69
Query: 160 PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAV 219
PYDK +K IEKAI +S LG+ P+NDG VIR+ +P+LT ERRKEL+K+V ++EE KVA+
Sbjct: 70 PYDKGIMKDIEKAIQASGLGLQPSNDGVVIRIIIPELTGERRKELAKIVKSKSEEKKVAI 129
Query: 220 RNIRRDALKAYEKLQKE-KKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RNIRRDA+ E L+K + LS+D +K + +QK TD Y+ KI ++ +KEKE+ +
Sbjct: 130 RNIRRDAM---EDLKKHTEGLSQDEIKTIQDRIQKTTDSYIDKISALTAEKEKEITTI 184
>gi|336437368|ref|ZP_08617074.1| ribosome-recycling factor [Lachnospiraceae bacterium 1_4_56FAA]
gi|336005494|gb|EGN35539.1| ribosome-recycling factor [Lachnospiraceae bacterium 1_4_56FAA]
Length = 183
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 126/174 (72%), Gaps = 1/174 (0%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +++ + + ++R GR+NP +LDKI V+YYG+P ++ +A ++ P++ + IQP++
Sbjct: 11 KMTKSMHSLHSELAAIRAGRANPHVLDKILVDYYGTPTPIQQVANVSVPEARMIQIQPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS LK +EKAI++S+LG+ P NDG IRL P+LT ERRKEL+K V K+ E KVA+RNI
Sbjct: 71 KSMLKVLEKAIMTSELGINPTNDGSTIRLIFPELTEERRKELAKDVKKKGEAAKVAIRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD A++KL K +SED +KDL +LQK+TD+Y+K++D +K KE++ V
Sbjct: 131 RRDGNDAFKKL-KGGDISEDEIKDLEDELQKMTDKYVKEVDKAVDEKTKEVMTV 183
>gi|410614331|ref|ZP_11325379.1| ribosome recycling factor [Glaciecola psychrophila 170]
gi|410166166|dbj|GAC39268.1| ribosome recycling factor [Glaciecola psychrophila 170]
Length = 185
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/181 (48%), Positives = 131/181 (72%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I D + RME++I++++ + +RTGR++P++LD I V YYG+ LK +A I DS +
Sbjct: 5 INDDARQRMEKSINVLKGQLSKIRTGRAHPSLLDNIMVPYYGTDTPLKQLANIIAEDSRT 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L + +DKSS K++EKAI+ SDLG+ P + G V+R+ +P LT ERRK+L +VV +AE+G
Sbjct: 65 LALTVFDKSSAKAVEKAIMQSDLGLNPMSAGSVMRIPMPALTEERRKDLIRVVRNEAEQG 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVA+RNIRRDA ++L KEK++SED+ + D+QKLTD ++K+ID I KEK+L++
Sbjct: 125 KVAIRNIRRDANSDIKELLKEKEISEDDSRRGEDDVQKLTDAFVKEIDEILVAKEKDLME 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|421277501|ref|ZP_15728320.1| ribosome recycling factor [Streptococcus mitis SPAR10]
gi|395874753|gb|EJG85835.1| ribosome recycling factor [Streptococcus mitis SPAR10]
Length = 185
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 125/183 (68%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K RM ++ + F +R GR+N ++LD+I VEYYG L IA I P++
Sbjct: 3 NAIVEKAKERMTQSHHSLAREFGGIRAGRANASLLDRINVEYYGVETPLNQIASITIPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K E
Sbjct: 63 RVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
KVA+RNIRRDA+ +K +K K+++ED +K L ++QK TD+ +K ID + KEKE+
Sbjct: 123 NAKVAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKEIQKATDDAVKHIDDMTANKEKEI 182
Query: 274 LKV 276
L+V
Sbjct: 183 LEV 185
>gi|332637898|ref|ZP_08416761.1| ribosome recycling factor [Weissella cibaria KACC 11862]
Length = 185
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 116/174 (66%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM + D++R ++R G +NP++L + EYYG+P L +A I P++ LLI P+D
Sbjct: 12 RMGKAADVLRRELGNIRAGVANPSILRNVTAEYYGAPTPLNQLASITVPEARVLLITPFD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS LK IE+AI +SDLG+TP NDG VIRL +P LT E RK L+K V ++E+ KVAVRN+
Sbjct: 72 KSILKDIEQAIFASDLGLTPANDGSVIRLVIPALTEETRKSLAKEVKGESEKAKVAVRNV 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA+ +K K +SED + L D+QK TD +K ID I +KEKELL +
Sbjct: 132 RRDAMDDAKKALKNGDMSEDEARKLEDDIQKATDAAVKNIDGIAAEKEKELLTI 185
>gi|262066278|ref|ZP_06025890.1| ribosome recycling factor [Fusobacterium periodonticum ATCC 33693]
gi|291379973|gb|EFE87491.1| ribosome recycling factor [Fusobacterium periodonticum ATCC 33693]
Length = 190
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/181 (48%), Positives = 131/181 (72%), Gaps = 2/181 (1%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+ + +M +TI+ V+ F S+R GR+N AMLD ++VE YGS V L I ++ P++ L+
Sbjct: 10 KECEEKMLKTIESVKERFTSIRAGRANVAMLDGVKVENYGSDVPLNQIGSVSAPEARLLV 69
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I P+DK+ + IEKA+++++LGMTPNNDG VIRL LP+LT++RRKE K+ +AE GK+
Sbjct: 70 IDPWDKTLIPKIEKALLAANLGMTPNNDGRVIRLVLPELTADRRKEYVKLAKNEAENGKI 129
Query: 218 AVRNIRRDALKAYEKLQKEKK--LSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
AVRNIR+D +KL+K+K+ +SED +K + +Q LTD+Y+K+ID + +KEKE+
Sbjct: 130 AVRNIRKDINNHLKKLEKDKENPISEDELKKEETHVQTLTDKYIKEIDELLAKKEKEITT 189
Query: 276 V 276
V
Sbjct: 190 V 190
>gi|424788917|ref|ZP_18215650.1| ribosome recycling factor [Streptococcus intermedius BA1]
gi|422112344|gb|EKU16150.1| ribosome recycling factor [Streptococcus intermedius BA1]
Length = 185
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 126/183 (68%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K RM ++ + F S+R GR+N ++LD+I VEYYG L IA I P++
Sbjct: 3 NAIVEKAKERMTQSHQSLAREFGSIRAGRANASLLDRITVEYYGVETPLNQIASITIPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+ P+DKSS+K IE+A+ +SDLG+TP +DG VIRL +P LT E R++L+K V K E
Sbjct: 63 RVLLVTPFDKSSIKDIERALNASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKVGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
K+A+RNIRRDA+ +K +K K+++ED +K L D+QK+TD +K ID + KEKEL
Sbjct: 123 NAKIAIRNIRRDAMDEAKKQEKAKEITEDELKGLEKDIQKVTDNAVKHIDEMTSTKEKEL 182
Query: 274 LKV 276
L+V
Sbjct: 183 LEV 185
>gi|381189667|ref|ZP_09897192.1| ribosome recycling factor [Thermus sp. RL]
gi|380452244|gb|EIA39843.1| ribosome recycling factor [Thermus sp. RL]
Length = 185
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/190 (44%), Positives = 135/190 (71%), Gaps = 7/190 (3%)
Query: 85 TIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKS 144
T++E+ AE ++ M+++++++ N +RTGR+NPA+L ++VEYYG+ V L
Sbjct: 2 TLKELYAE-------TRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGTHVPLNQ 54
Query: 145 IAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKEL 204
IA + PD+ +L++Q +D+++LK+IEKAI SDLG+ P+N G+ + + +P LT ERRK+L
Sbjct: 55 IATVTAPDARTLVVQSWDQNALKAIEKAIRDSDLGLKPSNKGDALYINIPPLTEERRKDL 114
Query: 205 SKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 264
+ V + AEEG+VA+RNIRR+AL +KL KE LSED K +++QK+TDE++ K D
Sbjct: 115 VRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQ 174
Query: 265 IYKQKEKELL 274
+ ++KE+E L
Sbjct: 175 LAEKKEQEXL 184
>gi|308233714|ref|ZP_07664451.1| ribosome recycling factor [Atopobium vaginae DSM 15829]
gi|328944064|ref|ZP_08241529.1| ribosome recycling factor [Atopobium vaginae DSM 15829]
gi|327492033|gb|EGF23807.1| ribosome recycling factor [Atopobium vaginae DSM 15829]
Length = 181
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/173 (50%), Positives = 124/173 (71%), Gaps = 3/173 (1%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M + ID ++ NF+ VRTGR+NP +LD I V+YYG P + +A I P+ S L+++P+DK
Sbjct: 12 MNKCIDALKNNFSKVRTGRANPQVLDGIRVDYYGQPTPIVQLAGIKVPEPSMLVVEPWDK 71
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
SSLK+IEKAI SSDLG+TP+NDG IRL P+ T ERR+EL K + AE+ KVAVRN R
Sbjct: 72 SSLKAIEKAIESSDLGITPSNDGTSIRLPFPKPTEERRRELVKECKQYAEDAKVAVRNAR 131
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RD A K +++++L+ED+V +QKLTDE++ KID + K K +E++++
Sbjct: 132 RD---ANNKAERDEELNEDDVNREKKAIQKLTDEFVAKIDEMLKTKSQEVMEI 181
>gi|253681713|ref|ZP_04862510.1| ribosome recycling factor [Clostridium botulinum D str. 1873]
gi|253561425|gb|EES90877.1| ribosome recycling factor [Clostridium botulinum D str. 1873]
Length = 185
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 130/176 (73%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +M+++I +++ +S++ G++NP+MLDKI+VEYYGS + +A +++P+ LLIQP
Sbjct: 10 KEKMDKSISVLKKELSSMKAGKANPSMLDKIKVEYYGSETPINQLANVSSPEPRVLLIQP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
+DK+SLK IE+AI+ SDLG+ P+NDG VIRL +P+LT E RKE+ K V K EE KVA+R
Sbjct: 70 WDKNSLKDIERAILQSDLGLNPSNDGSVIRLIVPELTEETRKEIVKKVKKMGEEAKVAIR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+IRRDA + L+K+ +++ED K+ +QK+TD+ +K+ID + KEK+++ V
Sbjct: 130 SIRRDANDKIKNLKKDNEITEDEAKEGEDSVQKITDKAIKEIDEVISLKEKDVMTV 185
>gi|315221842|ref|ZP_07863754.1| ribosome recycling factor [Streptococcus anginosus F0211]
gi|315189075|gb|EFU22778.1| ribosome recycling factor [Streptococcus anginosus F0211]
Length = 185
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 125/183 (68%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K RM ++ + F S+R GR+N ++LD+I VEYYG L IA I P++
Sbjct: 3 NAIVEKAKERMTQSHQSLAREFGSIRAGRANASLLDRISVEYYGVETPLNQIASITIPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+ P+DKSS+K IE A+ +SDLG+TP +DG VIRL +P LT E R+ L+K V K E
Sbjct: 63 RVLLVTPFDKSSIKDIEHALNASDLGITPASDGTVIRLVIPALTEETRRNLAKEVKKVGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
K+A+RNIRRDA+ +K +K K+++ED +K L D+QK+TDE +K ID + KEKEL
Sbjct: 123 NAKIAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDEAVKHIDEMTASKEKEL 182
Query: 274 LKV 276
++V
Sbjct: 183 IEV 185
>gi|227872428|ref|ZP_03990772.1| ribosome recycling factor [Oribacterium sinus F0268]
gi|227841725|gb|EEJ52011.1| ribosome recycling factor [Oribacterium sinus F0268]
Length = 184
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 124/174 (71%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +T D + + ++R GR+NP +LD+I V+YYG+P ++ + ++ P++ L IQP+D
Sbjct: 11 KMHKTHDNLMSELGTIRAGRANPHVLDRIMVDYYGTPTPIQQVGNVSVPEARILQIQPWD 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS +K IEKAI S+LG+ P NDG+VIRL P+LT ERRKEL+K V K+ E K+A+RNI
Sbjct: 71 KSVMKEIEKAINMSELGINPTNDGQVIRLVFPELTEERRKELTKDVKKKGEAAKIAIRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA+ +KL+K +++ED++ + D+Q+LTD ++KID + K KEL+ V
Sbjct: 131 RRDAMDLAKKLEKNAEITEDDLSRQTKDIQELTDHMIEKIDKSVEAKNKELMTV 184
>gi|258406064|ref|YP_003198806.1| ribosome recycling factor [Desulfohalobium retbaense DSM 5692]
gi|257798291|gb|ACV69228.1| ribosome recycling factor [Desulfohalobium retbaense DSM 5692]
Length = 184
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 128/182 (70%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
SI D K RME+ I + F+ +RTGR++ +++D I+V YY +P L +A I+ PD+
Sbjct: 3 SIFTDAKKRMEKAITNLEKEFSRLRTGRASASLVDGIQVSYYNTPTPLNQLASISIPDAR 62
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
++ IQP+D+SS ++IEKAI+ SDLG+ P NDG++IR+ +P LT ERRKEL K+ K E+
Sbjct: 63 TIAIQPWDRSSFENIEKAIMQSDLGLNPVNDGKIIRINIPALTEERRKELVKIAKKHTED 122
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
K+A+RNIRRDA + +K + +K +SED++ +QKLTDE++ K + +KEKE++
Sbjct: 123 AKIAIRNIRRDANEELKKQKNDKTISEDDMHRGQEKIQKLTDEFVDKAEKTLTEKEKEIM 182
Query: 275 KV 276
++
Sbjct: 183 EI 184
>gi|125973518|ref|YP_001037428.1| ribosome recycling factor [Clostridium thermocellum ATCC 27405]
gi|190360240|sp|A3DE56.1|RRF_CLOTH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|125713743|gb|ABN52235.1| ribosome recycling factor [Clostridium thermocellum ATCC 27405]
Length = 183
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 128/179 (71%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+++ +M++T+ +++ N+VR GR+N A+LD+I V+YYG P + + I+ P+ ++
Sbjct: 5 KNIEEKMKKTVSVLKDELNTVRAGRANAAILDRITVDYYGVPTPINQLGTISVPEPRVIV 64
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D LK IEK I SD+G+ PNNDG+VIRL P LT ERRKEL+K+ K E+ KV
Sbjct: 65 IQPWDAQILKEIEKEIQKSDIGINPNNDGKVIRLVFPPLTEERRKELTKLAKKYGEDAKV 124
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+R+IRRD ++ + ++K +++ED++K D+Q LTD+Y+ +ID + + KEKE+L+V
Sbjct: 125 AIRSIRRDGIEKKKAMKKNGEITEDDLKSAEKDIQNLTDKYIAEIDKLIEIKEKEILEV 183
>gi|378824167|ref|ZP_09846702.1| ribosome recycling factor [Sutterella parvirubra YIT 11816]
gi|378596997|gb|EHY30350.1| ribosome recycling factor [Sutterella parvirubra YIT 11816]
Length = 217
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/183 (44%), Positives = 128/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I K + +M RT++ +R +F +RTGR++ +LD I+V+YYG P + +AQI D+
Sbjct: 35 ADILKQAEHKMGRTVETLREDFTKIRTGRASTGLLDHIKVDYYGCPTPINQVAQIGVGDA 94
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L +QP++KS +K +EKAI SDLG+ P G++IR+ LP LT ERR+EL+KVV E
Sbjct: 95 HTLTVQPWEKSMIKVVEKAIRDSDLGLNPATSGDLIRVPLPPLTEERRRELTKVVRGFGE 154
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+ KVAVRN+RRDA ++L K+K++SED+ + +++QK+TD ++ +ID + KEKE+
Sbjct: 155 DAKVAVRNLRRDANTHIDRLLKDKEISEDDQRRAETEIQKITDRFIGEIDKVVGDKEKEI 214
Query: 274 LKV 276
+ V
Sbjct: 215 MTV 217
>gi|183221973|ref|YP_001839969.1| ribosome recycling factor [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|189912041|ref|YP_001963596.1| ribosome recycling factor [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|190360250|sp|B0SDN4.1|RRF_LEPBA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|238687812|sp|B0SM63.1|RRF_LEPBP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|167776717|gb|ABZ95018.1| Ribosome recycling factor [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167780395|gb|ABZ98693.1| Ribosome recycling factor (Ribosome releasing factor; RRF)
[Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
Length = 183
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 128/178 (71%), Gaps = 2/178 (1%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I K ++++M++T+D ++ +F ++RTG++NP M++ + V+YYG+ L + +I P+
Sbjct: 5 IIKSMQSKMDKTVDALKKDFGTIRTGKANPMMVEDVRVDYYGTLTPLNQLGKIACPEPRV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
+LI P++K LK IEKAI ++ LG+TPNNDG IR+ +P+LT ERRKEL+KVV ++AEE
Sbjct: 65 ILITPFEKGMLKDIEKAIFAASLGLTPNNDGSSIRINIPELTGERRKELAKVVKQKAEEK 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
KVA+RNIRRDA +K Q E +S+D VK +QK+TD Y+ K+ + K+KEKE+
Sbjct: 125 KVAIRNIRRDANDELKKHQSE--MSQDEVKGHQDKIQKITDSYIAKLGDLEKEKEKEI 180
>gi|153954045|ref|YP_001394810.1| ribosome recycling factor [Clostridium kluyveri DSM 555]
gi|219854658|ref|YP_002471780.1| hypothetical protein CKR_1315 [Clostridium kluyveri NBRC 12016]
gi|189044051|sp|A5N831.1|RRF_CLOK5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|254809504|sp|B9E1J1.1|RRF_CLOK1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|146346926|gb|EDK33462.1| Frr [Clostridium kluyveri DSM 555]
gi|219568382|dbj|BAH06366.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 185
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/172 (48%), Positives = 125/172 (72%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +T+D++ S++ GR+NPA+LDKIEVEYYG+ + +A I+ P++ L IQP+D
Sbjct: 12 KMNKTVDVLVKELASMKAGRANPAILDKIEVEYYGAMTPISQLAGISIPEARILAIQPWD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS+LKSIEKAI+ SDLG+ P+NDGE+IRL +P+LT E RK + K + K E+ KVA+R I
Sbjct: 72 KSALKSIEKAILKSDLGINPSNDGEIIRLIIPELTEETRKNIVKNIKKTGEDSKVAIRGI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
RR+ ++ L+K+ +SED +K +QK TD ++K ID+I ++KEKE++
Sbjct: 132 RRECNDKFKALKKKNDISEDEIKKGEEQIQKKTDIFIKNIDAILEKKEKEIM 183
>gi|15603852|ref|NP_246926.1| ribosome recycling factor [Pasteurella multocida subsp. multocida
str. Pm70]
gi|378774970|ref|YP_005177213.1| ribosome-recycling factor [Pasteurella multocida 36950]
gi|386834982|ref|YP_006240299.1| ribosome recycling factor [Pasteurella multocida subsp. multocida
str. 3480]
gi|417854861|ref|ZP_12500128.1| ribosome recycling factor [Pasteurella multocida subsp. multocida
str. Anand1_goat]
gi|421264735|ref|ZP_15715701.1| ribosome recycling factor [Pasteurella multocida subsp. multocida
str. P52VAC]
gi|425064724|ref|ZP_18467849.1| Ribosome recycling factor [Pasteurella multocida subsp. gallicida
X73]
gi|425066840|ref|ZP_18469960.1| Ribosome recycling factor [Pasteurella multocida subsp. gallicida
P1059]
gi|13431830|sp|P57984.1|RRF_PASMU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|12722427|gb|AAK04071.1| Errf [Pasteurella multocida subsp. multocida str. Pm70]
gi|338217282|gb|EGP03171.1| ribosome recycling factor [Pasteurella multocida subsp. multocida
str. Anand1_goat]
gi|356597518|gb|AET16244.1| ribosome-recycling factor [Pasteurella multocida 36950]
gi|385201685|gb|AFI46540.1| ribosome recycling factor [Pasteurella multocida subsp. multocida
str. 3480]
gi|401687847|gb|EJS83544.1| ribosome recycling factor [Pasteurella multocida subsp. multocida
str. P52VAC]
gi|404380626|gb|EJZ77116.1| Ribosome recycling factor [Pasteurella multocida subsp. gallicida
P1059]
gi|404380910|gb|EJZ77399.1| Ribosome recycling factor [Pasteurella multocida subsp. gallicida
X73]
Length = 185
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/181 (44%), Positives = 130/181 (71%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I+KD + RME++++ + + VRTGR+ P++LD I+VEYYGSP L+ +A + D+
Sbjct: 3 NEIKKDTQLRMEKSLETFKNHIAKVRTGRAQPSLLDGIQVEYYGSPTPLRQLANVVAEDA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L + +D+S + ++EKAI++SDLG+ P++ G IR+ LP LT ERR++L K+V +AE
Sbjct: 63 RTLAVTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+GK+AVRN+RRDA + L K+K++SED + ++QK+TD ++KK+D + KEKEL
Sbjct: 123 QGKIAVRNVRRDANDQIKALLKDKEISEDEERKAQDEIQKITDTFVKKVDEVLADKEKEL 182
Query: 274 L 274
L
Sbjct: 183 L 183
>gi|335051776|ref|ZP_08544686.1| ribosome recycling factor [Propionibacterium sp. 409-HC1]
gi|342213275|ref|ZP_08706000.1| ribosome recycling factor [Propionibacterium sp. CC003-HC2]
gi|419421672|ref|ZP_13961900.1| ribosome recycling factor [Propionibacterium acnes PRP-38]
gi|422395354|ref|ZP_16475394.1| ribosome recycling factor [Propionibacterium acnes HL097PA1]
gi|422495235|ref|ZP_16571524.1| ribosome recycling factor [Propionibacterium acnes HL025PA1]
gi|313813385|gb|EFS51099.1| ribosome recycling factor [Propionibacterium acnes HL025PA1]
gi|327334225|gb|EGE75939.1| ribosome recycling factor [Propionibacterium acnes HL097PA1]
gi|333765847|gb|EGL43175.1| ribosome recycling factor [Propionibacterium sp. 409-HC1]
gi|340768819|gb|EGR91344.1| ribosome recycling factor [Propionibacterium sp. CC003-HC2]
gi|379978163|gb|EIA11488.1| ribosome recycling factor [Propionibacterium acnes PRP-38]
Length = 184
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/183 (45%), Positives = 126/183 (68%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S I KD + +M +D R F ++RTGR+NPAM +K+ VEYY +P L+ +A P++
Sbjct: 2 SDIIKDAEKKMGSAVDHAREEFAAIRTGRANPAMFNKLMVEYYDTPTPLQQLASFQVPEA 61
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
++LI P+DKS + +EKAI SDLG+ P+NDG V+R LP LT ERRKE K+ +AE
Sbjct: 62 RTVLIAPFDKSCVNDVEKAIRDSDLGVNPSNDGNVVRCVLPALTEERRKEYIKMAKTKAE 121
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
EG++AVRN+RR + +K +K+K++SED + L +L ++T +Y+++ID + K KE EL
Sbjct: 122 EGRIAVRNVRRASNDVVKKQEKDKEISEDEMTRLEKELDQVTRKYVEQIDELLKSKESEL 181
Query: 274 LKV 276
L++
Sbjct: 182 LEI 184
>gi|410636561|ref|ZP_11347154.1| ribosome recycling factor [Glaciecola lipolytica E3]
gi|410143843|dbj|GAC14359.1| ribosome recycling factor [Glaciecola lipolytica E3]
Length = 185
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/183 (48%), Positives = 127/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I D K RME++I +++ + +RTGR++PA+LD I V YYG+ LK +A I D+
Sbjct: 3 NDIHDDAKQRMEKSISALKSQLSKIRTGRAHPALLDSIMVPYYGADTPLKQLANIFAEDA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L + +DKS+ ++EKAI+ SDLG+ P + G IR+ LP LT ERRK+L KVV +AE
Sbjct: 63 RTLALTVFDKSAAGAVEKAIMQSDLGLNPMSSGTAIRIPLPALTEERRKDLIKVVRNEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+G+VAVRNIRRDA ++L KEK+LSED +QKLTDE++K IDS + KEKEL
Sbjct: 123 QGRVAVRNIRRDANADIKELVKEKELSEDEGHKGEELIQKLTDEFVKTIDSALQDKEKEL 182
Query: 274 LKV 276
+++
Sbjct: 183 MEI 185
>gi|169824406|ref|YP_001692017.1| ribosome recycling factor [Finegoldia magna ATCC 29328]
gi|302380616|ref|ZP_07269081.1| ribosome recycling factor [Finegoldia magna ACS-171-V-Col3]
gi|303233629|ref|ZP_07320283.1| ribosome recycling factor [Finegoldia magna BVS033A4]
gi|417925958|ref|ZP_12569371.1| ribosome recycling factor [Finegoldia magna SY403409CC001050417]
gi|238687737|sp|B0S187.1|RRF_FINM2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|167831211|dbj|BAG08127.1| ribosome recycling factor [Finegoldia magna ATCC 29328]
gi|302311559|gb|EFK93575.1| ribosome recycling factor [Finegoldia magna ACS-171-V-Col3]
gi|302495063|gb|EFL54815.1| ribosome recycling factor [Finegoldia magna BVS033A4]
gi|341590560|gb|EGS33798.1| ribosome recycling factor [Finegoldia magna SY403409CC001050417]
Length = 185
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/181 (46%), Positives = 129/181 (71%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I KD++ + ++T+ ++ +VR GR+NP++LD I VEYYG+ LK +A I+ P++
Sbjct: 5 ILKDMETKADKTLHALKEELKTVRAGRANPSILDNIMVEYYGTSTPLKQVATISAPEARL 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L IQP+DKS +K IEK I +S+LG+TP+NDG +IRL PQLT +RRKEL+KVV + E+
Sbjct: 65 LTIQPWDKSIMKEIEKQIQASNLGITPSNDGTIIRLPFPQLTEDRRKELTKVVKEYGEKS 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KV +R+IRRD + +K++K ++SED + L D+Q LTD+ K+ID+I KE EL++
Sbjct: 125 KVTIRSIRRDFVDDAKKMEKNAEISEDELHVLLDDIQSLTDKLTKEIDNIVTDKETELME 184
Query: 276 V 276
+
Sbjct: 185 I 185
>gi|332298055|ref|YP_004439977.1| Ribosome-recycling factor [Treponema brennaborense DSM 12168]
gi|332181158|gb|AEE16846.1| Ribosome-recycling factor [Treponema brennaborense DSM 12168]
Length = 183
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 128/174 (73%)
Query: 102 ARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPY 161
ARME+TI ++ +F ++RTGR++ A+ DK+ V+YYG+P L ++ I+ P++ S++IQP+
Sbjct: 9 ARMEKTIAALKDDFKTLRTGRASAAIFDKVRVDYYGTPTPLNQVSTISVPEARSIVIQPF 68
Query: 162 DKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRN 221
DKS + IEKAI S+LG+ P+NDG+VIR+ +P LT++RRKEL K AE +VA+RN
Sbjct: 69 DKSLIGEIEKAIQKSELGLNPSNDGKVIRIAIPPLTADRRKELVKQAKATAENSRVAIRN 128
Query: 222 IRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
IRRD +K QK+ L+ED +K ++LQK TD++++ I+ I ++KEKE+++
Sbjct: 129 IRRDGNDDLKKQQKDGSLTEDGLKTAETELQKSTDKFIQDINKILEEKEKEIME 182
>gi|225574998|ref|ZP_03783608.1| hypothetical protein RUMHYD_03077 [Blautia hydrogenotrophica DSM
10507]
gi|225037845|gb|EEG48091.1| ribosome recycling factor [Blautia hydrogenotrophica DSM 10507]
Length = 183
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 124/174 (71%), Gaps = 1/174 (0%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +T + + ++R GR+NP +LDKI+V+YYG+P L+ +A I P+ + IQP++
Sbjct: 11 KMSKTKKSLEADLATIRAGRANPHILDKIQVDYYGTPSPLQQVANITVPEPRVIQIQPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
+K I KAI+SSDLG+ PN DG++IRL LP+LT ERRKEL K V K+ E KVA+RNI
Sbjct: 71 AKMVKEISKAILSSDLGINPNTDGKMIRLILPELTEERRKELVKDVKKRGEAAKVAIRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA A++KL K +SED VK+L +QK+TD+ +K+IDS +QK KE+L V
Sbjct: 131 RRDANDAFKKLAK-ADVSEDEVKELEDKIQKMTDKAVKEIDSTVEQKSKEILTV 183
>gi|225375366|ref|ZP_03752587.1| hypothetical protein ROSEINA2194_00991 [Roseburia inulinivorans DSM
16841]
gi|225212855|gb|EEG95209.1| hypothetical protein ROSEINA2194_00991 [Roseburia inulinivorans DSM
16841]
Length = 183
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 124/174 (71%), Gaps = 1/174 (0%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++T++ + F S+R GR+NP +LDK+ V+YYG+P ++ +A +N P+ + IQP++
Sbjct: 11 KMQKTMNNLSEEFGSIRAGRANPHVLDKLRVDYYGTPTPIQQVANVNVPEPRMIQIQPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
S +K IEK I++SDLG+ P NDG+ IRL P+LT ERRK+L+K V K+ E KVA+RNI
Sbjct: 71 ASMVKEIEKVIMTSDLGINPTNDGKTIRLLFPELTEERRKDLAKDVKKKGESAKVAIRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA +++KL KE +SED +K L + QK+TD+Y+ +D + K KE+L V
Sbjct: 131 RRDANDSFKKLAKE-DVSEDEIKALEENAQKMTDKYIAAVDEAVEVKTKEILTV 183
>gi|322392100|ref|ZP_08065562.1| ribosome recycling factor [Streptococcus peroris ATCC 700780]
gi|321145000|gb|EFX40399.1| ribosome recycling factor [Streptococcus peroris ATCC 700780]
Length = 185
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 125/183 (68%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K RM ++ + F +R GR+N ++LD+I VEYYG L IA I P++
Sbjct: 3 NAIVEKAKERMTQSHHSLAREFGGIRAGRANASLLDRITVEYYGVETPLNQIASITIPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K E
Sbjct: 63 RVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
KVA+RNIRRDA+ +K +K K+++ED +K L ++QK TD+ +K ID + KEKE+
Sbjct: 123 NAKVAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKEIQKATDDAVKHIDDMTANKEKEI 182
Query: 274 LKV 276
L+V
Sbjct: 183 LEV 185
>gi|427414188|ref|ZP_18904378.1| ribosome recycling factor [Veillonella ratti ACS-216-V-Col6b]
gi|425714564|gb|EKU77567.1| ribosome recycling factor [Veillonella ratti ACS-216-V-Col6b]
Length = 186
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 121/162 (74%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
+ RM++TI+ ++ F S+RTGR++ A+LDK+ V+YYG+P + +A + P+ +L++P
Sbjct: 11 EGRMDKTIEALKHEFASIRTGRASTALLDKVMVDYYGTPSPINQVANVTAPEPRLILVKP 70
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
++KS + IEKA++ SDLG+ P+NDG+ IRL +PQLT ERRKEL KVV+K+AEE KVAVR
Sbjct: 71 WEKSMIGPIEKAVLQSDLGLNPSNDGDTIRLAIPQLTEERRKELVKVVSKKAEEAKVAVR 130
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKI 262
NIRRDA A +K +K K ++ED+ K +QKLTD+ +K I
Sbjct: 131 NIRRDANDALKKEEKAKTITEDDAKQGQDKIQKLTDKKIKVI 172
>gi|407793383|ref|ZP_11140417.1| ribosome recycling factor [Idiomarina xiamenensis 10-D-4]
gi|407215006|gb|EKE84847.1| ribosome recycling factor [Idiomarina xiamenensis 10-D-4]
Length = 185
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/183 (48%), Positives = 129/183 (70%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I KD K+RME++++ +R VRTGR++P++LD I V YYG+ L+ +A I T DS
Sbjct: 3 NDIIKDAKSRMEKSVEALRGQMAKVRTGRAHPSLLDGITVNYYGTETPLRQLANITTEDS 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L + +DKSS ++EKAI+ SDLG+ P G VIR+ LP LT ERR++L KVV +AE
Sbjct: 63 RTLALTVFDKSSSGAVEKAIMQSDLGLNPAAAGAVIRVPLPPLTEERRRDLVKVVRAEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+G+VAVRNIRRDA ++L KEK+++ED + + ++QKLTD+Y+ ID K KE +L
Sbjct: 123 QGRVAVRNIRRDANSDLKELLKEKEITEDEERKATDEIQKLTDKYIAAIDDHLKAKEDDL 182
Query: 274 LKV 276
++V
Sbjct: 183 MEV 185
>gi|289662904|ref|ZP_06484485.1| ribosome recycling factor [Xanthomonas campestris pv. vasculorum
NCPPB 702]
gi|289670225|ref|ZP_06491300.1| ribosome recycling factor [Xanthomonas campestris pv. musacearum
NCPPB 4381]
Length = 185
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/181 (48%), Positives = 126/181 (69%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I++D + RM ++ID +R + +VRTGR++PA+LD I+V+ YG+ L +A I+ + S
Sbjct: 5 IKQDAQTRMTKSIDALRHSLTTVRTGRASPALLDGIKVKAYGTDTPLNQVASISVSEGRS 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L+I +DK +K +EKAI +SDLG+TP G VIRL LP LT ERRKELSK V + E+
Sbjct: 65 LVISLFDKGMIKDVEKAIYASDLGLTPTVVGTVIRLNLPPLTEERRKELSKSVHGEGEDS 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVA+RNIRRDA + + L K+K ++ED + D+QKLTD+ +K +D + K KE+EL+
Sbjct: 125 KVAIRNIRRDANQQVKDLLKDKAVTEDEARGAEDDIQKLTDKAIKDVDEVVKAKEQELMT 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|116627334|ref|YP_819953.1| ribosome recycling factor [Streptococcus thermophilus LMD-9]
gi|386086129|ref|YP_006002003.1| Ribosome recycling factor [Streptococcus thermophilus ND03]
gi|386344067|ref|YP_006040231.1| ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Streptococcus thermophilus JIM 8232]
gi|387909229|ref|YP_006339535.1| ribosome recycling factor [Streptococcus thermophilus MN-ZLW-002]
gi|445373020|ref|ZP_21426206.1| ribosome recycling factor [Streptococcus thermophilus MTCC 5460]
gi|445387990|ref|ZP_21427919.1| ribosome recycling factor [Streptococcus thermophilus MTCC 5461]
gi|122268064|sp|Q03M15.1|RRF_STRTD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|116100611|gb|ABJ65757.1| ribosome recycling factor [Streptococcus thermophilus LMD-9]
gi|312277842|gb|ADQ62499.1| Ribosome recycling factor [Streptococcus thermophilus ND03]
gi|339277528|emb|CCC19276.1| ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Streptococcus thermophilus JIM 8232]
gi|387574164|gb|AFJ82870.1| ribosome recycling factor [Streptococcus thermophilus MN-ZLW-002]
gi|444750883|gb|ELW75665.1| ribosome recycling factor [Streptococcus thermophilus MTCC 5461]
gi|444751054|gb|ELW75827.1| ribosome recycling factor [Streptococcus thermophilus MTCC 5460]
Length = 185
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/181 (50%), Positives = 124/181 (68%), Gaps = 1/181 (0%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
IEK K R T + + F ++R GR+N ++LD+I VEYYG+P L +A I P++
Sbjct: 6 IEK-AKERFAHTHESLAREFGAIRAGRANASLLDRITVEYYGAPTPLNQLASITVPEARV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LLI P+DK S+ IE+AI SDLG+ P NDG VIRL +P LT E RKEL+K V K E
Sbjct: 65 LLISPFDKGSIADIERAINESDLGINPANDGSVIRLVIPALTEETRKELAKEVKKVGENA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
K+A+RNIRRDA+ +K +KEK+++ED +K L D+QK TD+ + KIDS+ +KEKELL
Sbjct: 125 KIAIRNIRRDAMDEAKKQEKEKEITEDQLKTLEKDIQKATDDAVNKIDSMIAEKEKELLT 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|386714365|ref|YP_006180688.1| ribosome recycling factor [Halobacillus halophilus DSM 2266]
gi|384073921|emb|CCG45414.1| ribosome recycling factor [Halobacillus halophilus DSM 2266]
Length = 185
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 125/174 (71%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+ME+ + +VR GR+NPA+LD + V+YYG+ L +AQ+ P+ L+I PYD
Sbjct: 12 QMEQAVQAFSRQLATVRAGRANPAILDNVYVDYYGAATPLNQLAQVGAPEPRLLVITPYD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS++ IEKAI +DLG++P++DG V+R+ +P LT ERRK+L+KVV K EE KV VRNI
Sbjct: 72 KSAIAEIEKAIQKADLGLSPSSDGNVVRINIPSLTEERRKDLAKVVGKYTEEAKVQVRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RR++ +KL+KE +L+ED+++ D+QK TD++++KID + K KE+E+++V
Sbjct: 132 RRESNDRLKKLEKEGELTEDDLRSYHDDVQKATDKHVEKIDQLAKTKEEEIMEV 185
>gi|312143676|ref|YP_003995122.1| ribosome recycling factor [Halanaerobium hydrogeniformans]
gi|311904327|gb|ADQ14768.1| ribosome recycling factor [Halanaerobium hydrogeniformans]
Length = 185
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 135/179 (75%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+ + RM++ ++ + + N++RTGR+ P++++ I+ YG ++ +A++ P++ ++
Sbjct: 7 KETEERMKKALEATKEDLNTIRTGRARPSLVENIKANNYGVATPIQQMAKVMAPEARQIV 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I+P+DK+++++IEKAI+ +LG+ P+NDG VIR+ +PQLT ERRKEL+K++ K+AE+GK+
Sbjct: 67 IEPWDKNNIEAIEKAIMQENLGLNPSNDGNVIRINIPQLTEERRKELTKILHKKAEDGKI 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RNIRRDA + E L+ E ++SEDN+ ++Q LTD Y+ KI+SI ++KE E+++V
Sbjct: 127 AIRNIRRDANEELEMLEDEGEISEDNMHRGFDNVQDLTDTYIGKIESITEKKENEIMEV 185
>gi|403386836|ref|ZP_10928893.1| ribosome recycling factor [Clostridium sp. JC122]
Length = 185
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/181 (48%), Positives = 128/181 (70%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I K+ +M +T+ +++ ++++ GR+NP MLD+IEVE YGS V L +A I+ P++
Sbjct: 5 IIKNADEKMTKTLTVLKGELSTMKAGRANPKMLDRIEVECYGSMVPLNQVANISAPEARV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LLIQP+DKSSLK IEKAI+ SDLG+ P +DG VIRL +P+LT E RK L K + K E+
Sbjct: 65 LLIQPWDKSSLKDIEKAILKSDLGLNPTSDGAVIRLMIPELTEETRKNLVKNIKKVGEDA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVAVR+IRRDA + L+K+ +++ED K +QK TD+Y+K+ID+I KEKE++
Sbjct: 125 KVAVRSIRRDANDKIKALKKDGEITEDEAKKSEDSIQKETDKYVKEIDTIVAAKEKEVMS 184
Query: 276 V 276
+
Sbjct: 185 I 185
>gi|295426323|ref|ZP_06818982.1| ribosome recycling factor [Lactobacillus amylolyticus DSM 11664]
gi|295063996|gb|EFG54945.1| ribosome recycling factor [Lactobacillus amylolyticus DSM 11664]
Length = 185
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 126/173 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K ME++I + R N S+R G +N ++LD I+V YYG+P LK I+ ++ P+ LLI P
Sbjct: 10 KENMEKSIKVFRKNLASIRAGVANASILDGIQVGYYGAPTPLKQISSVSIPEPRVLLITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YD +SL IE A+++S+LG+ P NDG+VIRL +PQLT ERR+E++K V K+AEE K+AVR
Sbjct: 70 YDINSLDDIEHALLASNLGLNPANDGKVIRLVIPQLTGERRQEIAKEVGKEAEEAKIAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
N+RRDA+ + ++ K+ +++ED ++L ++QK+TD+ +K+ID I K KE+
Sbjct: 130 NVRRDAMNSLKRQLKDDEITEDEQRNLEKEVQKVTDDSIKEIDKIADDKRKEI 182
>gi|55820525|ref|YP_138967.1| ribosome recycling factor [Streptococcus thermophilus LMG 18311]
gi|55822414|ref|YP_140855.1| ribosome recycling factor [Streptococcus thermophilus CNRZ1066]
gi|62900786|sp|Q5M140.1|RRF_STRT1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|62900787|sp|Q5M5M9.1|RRF_STRT2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|55736510|gb|AAV60152.1| ribosome recycling factor [Streptococcus thermophilus LMG 18311]
gi|55738399|gb|AAV62040.1| ribosome recycling factor [Streptococcus thermophilus CNRZ1066]
Length = 185
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 92/181 (50%), Positives = 124/181 (68%), Gaps = 1/181 (0%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
IEK K R T + + F ++R GR+N ++LD+I VEYYG+P L +A I P++
Sbjct: 6 IEK-AKERFAHTHESLAREFGAIRAGRANASLLDRITVEYYGAPTPLNQLASITVPEARV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LLI P+DK S+ IE+AI SDLG+ P NDG VIRL +P LT E RKEL+K V K E
Sbjct: 65 LLISPFDKGSIADIERAINESDLGINPANDGSVIRLVIPALTEETRKELAKEVKKVGENA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
K+A+RNIRRDA+ +K +KEK+++ED +K L D+QK TD+ + KIDS+ +KEKELL
Sbjct: 125 KIAIRNIRRDAMDEAKKQEKEKEITEDQLKTLEKDIQKATDDAVNKIDSMIAEKEKELLT 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|418515716|ref|ZP_13081895.1| ribosome recycling factor [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
gi|410707625|gb|EKQ66076.1| ribosome recycling factor [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
Length = 185
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 86/183 (46%), Positives = 127/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I++D + RM ++ID +R + ++RTGR++PA+LD I+V+ YG+ L +A I+ +
Sbjct: 3 TQIKQDAQTRMTKSIDALRHSLTTIRTGRASPALLDGIKVKVYGADTPLNQVASISVSEG 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
SL+I +DK +K +EKAI +SDLG+TP G VIRL LP LT ERRKELSK V + E
Sbjct: 63 RSLVISLFDKGMIKDVEKAIYASDLGLTPTVVGTVIRLNLPPLTEERRKELSKSVHGEGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+ KVA+RNIRRDA + + L K+K ++ED + D+QKLTD+ +K +D + K KE+EL
Sbjct: 123 DSKVAIRNIRRDANQQVKDLLKDKAVTEDEARSAEDDIQKLTDKAIKDVDEVVKGKEQEL 182
Query: 274 LKV 276
+ V
Sbjct: 183 MTV 185
>gi|317056783|ref|YP_004105250.1| ribosome recycling factor [Ruminococcus albus 7]
gi|315449052|gb|ADU22616.1| ribosome recycling factor [Ruminococcus albus 7]
Length = 184
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 84/181 (46%), Positives = 134/181 (74%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I+ K +ME++++++ ++F ++R GR+NPA+LDK++V+YYGSP + +A ++ ++
Sbjct: 4 IKNKAKEKMEKSVNVMLSDFAAIRAGRANPAVLDKVKVDYYGSPTPVNQMAAVSVAEARI 63
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L+I P+DKS+LKSIEKAI +SD+G+ P NDG+ IRL PQLT +RRKE+ K V K E+
Sbjct: 64 LVITPWDKSTLKSIEKAIQASDIGINPQNDGQTIRLIFPQLTEDRRKEIVKDVKKGGEDT 123
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVAVR+IRRDA++ + +K +++ED KD +QK+TD+++K+ID +KEKE+L
Sbjct: 124 KVAVRSIRRDAIEKIKAKKKNNEITEDEQKDGEEAIQKITDKFIKEIDGHVAEKEKEILS 183
Query: 276 V 276
+
Sbjct: 184 I 184
>gi|403378772|ref|ZP_10920829.1| ribosome recycling factor [Paenibacillus sp. JC66]
Length = 184
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 88/182 (48%), Positives = 127/182 (69%), Gaps = 1/182 (0%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
+I+K+ + RME+ I ++ S+R GR+ PA+LD++ VEYYG+ + +A I TPD+
Sbjct: 4 TIKKNAEDRMEKAIAALQKELASLRAGRATPALLDRVLVEYYGTMTPVNQLANITTPDAR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
SL IQP+DKSS+ +IEKAI+ S+LG+TP+NDG IR+ LP LT ERR +L K+ K EE
Sbjct: 64 SLYIQPWDKSSIGAIEKAIMKSELGLTPSNDGSAIRIVLPALTEERRADLVKMTRKYGEE 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
KVA+RNIRRDA +K +K +SED + D+QKLTD+Y+ ++D I KEK++
Sbjct: 124 AKVAIRNIRRDANDEIKKREK-TDISEDESRRHQDDIQKLTDKYVAEVDKILAVKEKDIT 182
Query: 275 KV 276
+V
Sbjct: 183 EV 184
>gi|421526087|ref|ZP_15972696.1| ribosome recycling factor [Fusobacterium nucleatum ChDC F128]
gi|402257846|gb|EJU08319.1| ribosome recycling factor [Fusobacterium nucleatum ChDC F128]
Length = 190
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 131/178 (73%), Gaps = 2/178 (1%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+ + +M +TI+ V+ F ++R GR+N +MLD ++VE YGS V L I ++ P++ L+
Sbjct: 10 KECEEKMLKTIEAVKEKFTAIRAGRANVSMLDGVKVENYGSEVPLNQIGTVSAPEARLLV 69
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I P+DKS + IEKA+++++LGMTPNNDG VIRL LP+LT++RRKE K+ +AE GK+
Sbjct: 70 IDPWDKSLIAKIEKALLAANLGMTPNNDGRVIRLVLPELTADRRKEYVKLAKNEAENGKI 129
Query: 218 AVRNIRRDALKAYEKLQKEKK--LSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
A+RNIR+D +KL+K+K+ +SED +K + +Q LTD+Y+K+ID ++ +KEKE+
Sbjct: 130 ALRNIRKDINNHLKKLEKDKENPISEDELKKEEATVQTLTDKYVKEIDDLFSKKEKEI 187
>gi|220934336|ref|YP_002513235.1| ribosome recycling factor [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|254809540|sp|B8GQ53.1|RRF_THISH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|219995646|gb|ACL72248.1| ribosome recycling factor [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 185
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 132/182 (72%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
SI+KD KARM ++I+ +R +RTGR++ ++LD + VEYYGS V + +A +N D+
Sbjct: 4 SIKKDAKARMGKSIESLRNELAKIRTGRAHTSLLDHVMVEYYGSDVPISQVANVNVEDAR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
+L + P++K+ + +EKAI++SDLG+ P++ G VIR+ +P LT ERR++L KVV +AE
Sbjct: 64 TLTVTPWEKTMVSKVEKAIMTSDLGLNPSSMGTVIRVPMPALTEERRRDLVKVVRGEAEN 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
+VA+RNIRRDA A + L K K++SED+ + ++QKLTD +++++D + +KEKEL+
Sbjct: 124 ARVAIRNIRRDANNALKALVKGKEISEDDERRAQDEIQKLTDSHIEEVDKVLAEKEKELM 183
Query: 275 KV 276
+V
Sbjct: 184 EV 185
>gi|294666399|ref|ZP_06731645.1| ribosome releasing factor [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|292603841|gb|EFF47246.1| ribosome releasing factor [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
Length = 185
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 86/183 (46%), Positives = 127/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I++D + RM ++ID +R + ++RTGR++PA+LD I+V+ YG+ L +A I+ +
Sbjct: 3 TQIKQDAQTRMTKSIDALRHSLTTIRTGRASPALLDGIKVKAYGADTPLNQVASISVSEG 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
SL+I +DK +K +EKAI +SDLG+TP G VIRL LP LT ERRKELSK V + E
Sbjct: 63 RSLVISLFDKGMIKDVEKAIYASDLGLTPTVVGTVIRLNLPPLTEERRKELSKSVHGEGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+ KVA+RNIRRDA + + L K+K ++ED + D+QKLTD+ +K +D + K KE+EL
Sbjct: 123 DSKVAIRNIRRDANQQVKDLLKDKAVTEDEARSAEDDIQKLTDKAIKNVDEVVKGKEQEL 182
Query: 274 LKV 276
+ V
Sbjct: 183 MTV 185
>gi|223041490|ref|ZP_03611693.1| ribosome recycling factor [Actinobacillus minor 202]
gi|240948667|ref|ZP_04753039.1| ribosome recycling factor [Actinobacillus minor NM305]
gi|223017748|gb|EEF16155.1| ribosome recycling factor [Actinobacillus minor 202]
gi|240296883|gb|EER47461.1| ribosome recycling factor [Actinobacillus minor NM305]
Length = 185
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/181 (43%), Positives = 131/181 (72%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I+KD + RME+++D ++++ + +RTGR+ P++LD I+VEYYGS L+ +A + D+
Sbjct: 3 NEIKKDTQDRMEKSLDALKSHISKIRTGRAQPSLLDGIQVEYYGSATPLRQVANVVAEDA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L + +D+S + ++EKAI++SDLG+ P++ G IR+ LP LT ERR++L K+V + E
Sbjct: 63 RTLAVNVFDRSLISAVEKAILTSDLGLNPSSAGATIRVPLPPLTEERRRDLIKIVKGEGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+GK+A+RN+RRDA + L K+K++SED + ++QK+TD Y+KK+D + KEKEL
Sbjct: 123 QGKIAIRNVRRDANDQIKALLKDKEISEDEERKAQDEIQKITDSYIKKVDEVLAAKEKEL 182
Query: 274 L 274
L
Sbjct: 183 L 183
>gi|335357442|ref|ZP_08549312.1| ribosome recycling factor [Lactobacillus animalis KCTC 3501]
Length = 187
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 84/172 (48%), Positives = 122/172 (70%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M + + ++ ++R G +N ++L+++ VEYYG P L +AQI+ P++ LLI PYD
Sbjct: 14 KMTKAEEALQRELGTIRAGVANASLLNRVNVEYYGVPTPLNQMAQISVPEARVLLITPYD 73
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KSSLK IE A+++SDLG+ P NDG IRL +PQLT ERRKEL+K V +E+GKVAVRN+
Sbjct: 74 KSSLKDIEHALLASDLGIAPMNDGSAIRLVIPQLTEERRKELAKQVKATSEKGKVAVRNV 133
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
RR+ + A +K QK L+ED ++DL QK+TD +K I++I +KEKE+L
Sbjct: 134 RREMMDALKKAQKNGDLTEDELRDLEDVAQKVTDSSIKNIENITAEKEKEVL 185
>gi|381171145|ref|ZP_09880294.1| ribosome recycling factor [Xanthomonas citri pv. mangiferaeindicae
LMG 941]
gi|380688369|emb|CCG36781.1| ribosome recycling factor [Xanthomonas citri pv. mangiferaeindicae
LMG 941]
Length = 185
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 86/183 (46%), Positives = 127/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I++D + RM ++ID +R + ++RTGR++PA+LD I+V+ YG+ L +A I+ +
Sbjct: 3 TQIKQDAQTRMTKSIDALRHSLTTIRTGRASPALLDGIKVKAYGADTPLNQVASISVSEG 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
SL+I +DK +K +EKAI +SDLG+TP G VIRL LP LT ERRKELSK V + E
Sbjct: 63 RSLVISLFDKGMIKDVEKAIYASDLGLTPTVVGTVIRLNLPPLTEERRKELSKSVHGEGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+ KVA+RNIRRDA + + L K+K ++ED + D+QKLTD+ +K +D + K KE+EL
Sbjct: 123 DSKVAIRNIRRDANQQVKDLLKDKAVTEDEARSAEDDIQKLTDKAIKAVDEVVKGKEQEL 182
Query: 274 LKV 276
+ V
Sbjct: 183 MTV 185
>gi|19704944|ref|NP_602439.1| ribosome recycling factor (RRF) [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|296329199|ref|ZP_06871700.1| ribosome recycling factor [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
gi|22001936|sp|Q8R5Z9.1|RRF_FUSNN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|19712846|gb|AAL93738.1| Ribosome Recycling Factor (RRF) [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|296153555|gb|EFG94372.1| ribosome recycling factor [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
Length = 190
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 131/178 (73%), Gaps = 2/178 (1%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+ + +M +TI+ V+ F ++R GR+N +MLD I+VE YGS V L I ++ P++ L+
Sbjct: 10 KECEEKMVKTIEAVKEKFTAIRAGRANVSMLDGIKVENYGSEVPLNQIGTVSAPEARLLV 69
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I P+DK+ + IEKAI+++++GMTPNNDG VIRL LP+LT++RRKE K+ +AE GK+
Sbjct: 70 IDPWDKTLISKIEKAILAANIGMTPNNDGRVIRLVLPELTADRRKEYVKLAKNEAENGKI 129
Query: 218 AVRNIRRDALKAYEKLQKEKK--LSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
A+RNIR+D +KL+K+K+ +SED +K +++Q LTD+Y+K+ID + +KEKE+
Sbjct: 130 AIRNIRKDINNHLKKLEKDKENPISEDELKKEETNVQTLTDKYVKEIDDLLAKKEKEI 187
>gi|34762371|ref|ZP_00143373.1| Ribosome Recycling Factor (RRF) [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
gi|27887953|gb|EAA25019.1| Ribosome Recycling Factor (RRF) [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
Length = 190
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 85/178 (47%), Positives = 130/178 (73%), Gaps = 2/178 (1%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+ + +M +TI+ V+ F ++R GR+N +MLD ++VE YGS V L I ++ P++ L+
Sbjct: 10 KECEEKMVKTIEAVKEKFTAIRAGRANVSMLDGVKVENYGSEVPLNQIGTVSAPEARLLV 69
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I P+DKS + +EKA+++++LGMTPNNDG VIRL LP+LT+ERRKE K+ +AE GK+
Sbjct: 70 IDPWDKSLISKVEKALLAANLGMTPNNDGRVIRLVLPELTAERRKEYVKLAKNEAENGKI 129
Query: 218 AVRNIRRDALKAYEKLQKEKK--LSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
AVRNIR+D +KL+K+K+ +SED +K + +Q LTD+Y+K+ID + +KEKE+
Sbjct: 130 AVRNIRKDINNHLKKLEKDKENPISEDELKKEETRVQTLTDKYVKEIDDLLAKKEKEI 187
>gi|402313158|ref|ZP_10832079.1| ribosome recycling factor [Lachnospiraceae bacterium ICM7]
gi|400366918|gb|EJP19938.1| ribosome recycling factor [Lachnospiraceae bacterium ICM7]
Length = 184
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 85/179 (47%), Positives = 126/179 (70%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K + +M ++ID++ + S+R GR+NP +LD+I+VEYYG+P ++ + I+ P+ +
Sbjct: 6 KKFEEKMTKSIDVLLEEYASIRAGRANPHVLDRIKVEYYGTPTPIQQVGNISVPEPRIIQ 65
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I P++KS LK IEKAI SDLG+ P NDG IRL P+LT ERRKEL K V K+ E KV
Sbjct: 66 IAPWEKSLLKEIEKAINMSDLGINPTNDGSCIRLIFPELTEERRKELVKDVKKKGEACKV 125
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
AVRNIRRDA+ A +KL+K + +ED++KD + +QK+TD+ ++++D + K KE+L V
Sbjct: 126 AVRNIRRDAIDAIKKLEKAGEFTEDDLKDGENKIQKITDKAIERVDKAIEDKSKEILTV 184
>gi|294624553|ref|ZP_06703230.1| ribosome releasing factor [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292601159|gb|EFF45219.1| ribosome releasing factor [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
Length = 185
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 86/183 (46%), Positives = 127/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I++D + RM ++ID +R + ++RTGR++PA+LD I+V+ YG+ L +A I+ +
Sbjct: 3 TQIKQDAQTRMTKSIDALRHSLTTIRTGRASPALLDGIKVKAYGADTPLNQVASISVSEG 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
SL+I +DK +K +EKAI +SDLG+TP G VIRL LP LT ERRKELSK V + E
Sbjct: 63 RSLVISLFDKGMIKDVEKAIYASDLGLTPTVVGTVIRLNLPPLTEERRKELSKSVHGEGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+ KVA+RNIRRDA + + L K+K ++ED + D+QKLTD+ +K +D + K KE+EL
Sbjct: 123 DSKVAIRNIRRDANQQVKDLLKDKAVTEDEARGAEDDIQKLTDKAIKDVDEVVKGKEQEL 182
Query: 274 LKV 276
+ V
Sbjct: 183 MTV 185
>gi|157376290|ref|YP_001474890.1| ribosome recycling factor [Shewanella sediminis HAW-EB3]
gi|189044077|sp|A8FY39.1|RRF_SHESH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|157318664|gb|ABV37762.1| ribosome recycling factor [Shewanella sediminis HAW-EB3]
Length = 185
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 84/181 (46%), Positives = 126/181 (69%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I+ D K+RME+ ++ +T VRTGR++P++LD I+V YYGS LK + ++ DS +
Sbjct: 5 IKNDAKSRMEKCVESTKTQMAKVRTGRAHPSLLDTIKVSYYGSMTPLKQVGNVSIEDSRT 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L + +D + ++++EKAI+SSDLG+ P + G IR+ LP LT ERRK+L KVV +AE G
Sbjct: 65 LAVNVFDSTMIQAVEKAIMSSDLGLNPMSAGATIRIPLPALTEERRKDLIKVVRAEAENG 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
++AVRN+RRDA + L+KEK+ +ED+V+ D+QK TD ++K ID I KE EL++
Sbjct: 125 RIAVRNVRRDANSDVKSLEKEKECTEDDVRRTEDDVQKFTDAHIKLIDEILTAKEAELME 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|354613711|ref|ZP_09031619.1| Ribosome-recycling factor [Saccharomonospora paurometabolica YIM
90007]
gi|353221950|gb|EHB86280.1| Ribosome-recycling factor [Saccharomonospora paurometabolica YIM
90007]
Length = 185
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 124/178 (69%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + +ME+ + + + + SVRTGR++P+M +I VEYYG P L +A +N P++ +I
Sbjct: 8 DAEEKMEKAVSVAKEDLTSVRTGRASPSMFARIHVEYYGVPTPLNQLASVNIPEARMAVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+PYD S L ++E+AI SDLG+ P+NDG VIR+ +PQLT ERRKE+ KV + EEGK++
Sbjct: 68 KPYDTSQLGAVERAIRDSDLGVNPSNDGTVIRVVIPQLTEERRKEMVKVAKSKGEEGKIS 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+R++RR A + +++ K+ + ED+V +LQ LTD+Y+ +++ + K KE ELL+V
Sbjct: 128 IRSVRRKAKEELDRIAKDGEAGEDDVARAEKELQNLTDKYVHQVEELVKHKESELLEV 185
>gi|410088378|ref|ZP_11285073.1| Ribosome recycling factor [Morganella morganii SC01]
gi|455738090|ref|YP_007504356.1| Ribosome recycling factor [Morganella morganii subsp. morganii KT]
gi|409765300|gb|EKN49415.1| Ribosome recycling factor [Morganella morganii SC01]
gi|455419653|gb|AGG29983.1| Ribosome recycling factor [Morganella morganii subsp. morganii KT]
Length = 185
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 86/180 (47%), Positives = 130/180 (72%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I+KD + RME+ ++ +++ + VRTGR++P++LD I VEYYG+P L+ +A + DS +
Sbjct: 5 IQKDAQERMEKCVESLKSQISKVRTGRASPSLLDGIVVEYYGTPTPLRQLANVVAEDSRT 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L I +D+S +IEKAI++SDLG+ P++ G VIR+ LP LT ERRK+L KVV AE+G
Sbjct: 65 LAITVFDRSMSPAIEKAIMASDLGLNPSSAGTVIRVPLPALTEERRKDLIKVVRGDAEQG 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
++AVRN+RRDA + L K+K++SED+ + D+QK+TD ++KKID KEKEL++
Sbjct: 125 RIAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKMTDLFIKKIDDALAAKEKELME 184
>gi|340753408|ref|ZP_08690194.1| ribosome-recycling factor [Fusobacterium sp. 2_1_31]
gi|422315167|ref|ZP_16396606.1| ribosome-recycling factor [Fusobacterium periodonticum D10]
gi|229423000|gb|EEO38047.1| ribosome-recycling factor [Fusobacterium sp. 2_1_31]
gi|404592793|gb|EKA94542.1| ribosome-recycling factor [Fusobacterium periodonticum D10]
Length = 190
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 85/181 (46%), Positives = 132/181 (72%), Gaps = 2/181 (1%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+ + +M +TI+ V+ F S+R GR+N AMLD ++VE YGS V L + ++ P++ L+
Sbjct: 10 KECEDKMLKTIESVKERFTSIRAGRANVAMLDAVKVENYGSEVPLNQVGSVSAPEARLLV 69
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
+ P+DK+ + IEKA+++++LGMTPNNDG VIRL LP+LT++RRKE K+ +AE GK+
Sbjct: 70 VDPWDKTLIPKIEKALLAANLGMTPNNDGRVIRLVLPELTADRRKEYVKLAKNEAENGKI 129
Query: 218 AVRNIRRDALKAYEKLQKEKK--LSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
AVRNIR+D +KL+K+K+ +SED +K +++Q LTD+Y+K+ID + +KEKE+
Sbjct: 130 AVRNIRKDINNHLKKLEKDKENPISEDELKKEEANVQTLTDKYIKEIDELLAKKEKEITT 189
Query: 276 V 276
V
Sbjct: 190 V 190
>gi|383823902|ref|ZP_09979090.1| ribosome recycling factor [Mycobacterium xenopi RIVM700367]
gi|383338338|gb|EID16703.1| ribosome recycling factor [Mycobacterium xenopi RIVM700367]
Length = 185
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/178 (44%), Positives = 121/178 (67%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + RME+ + + R + ++RTGR+NP M KI ++YYG+P + +A IN P++ ++I
Sbjct: 8 DAEERMEKAVSVARDDLATIRTGRANPGMFSKIVIDYYGAPTPITQLASINVPEARLVVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+PY+ + L +IE AI +SDLG+ P NDG +IR+ +PQLT ERR+EL K + EE +V+
Sbjct: 68 KPYEANQLHAIETAIRNSDLGVNPTNDGTLIRVAVPQLTEERRRELVKQARHKGEEARVS 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRNIRR A++ +++KE + ED V DL+K T +Y+ +ID + K KE ELL+V
Sbjct: 128 VRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLEKTTHQYVTQIDELVKHKEGELLEV 185
>gi|373471489|ref|ZP_09562526.1| ribosome recycling factor [Lachnospiraceae bacterium oral taxon 082
str. F0431]
gi|371759476|gb|EHO48208.1| ribosome recycling factor [Lachnospiraceae bacterium oral taxon 082
str. F0431]
Length = 184
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 85/179 (47%), Positives = 125/179 (69%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K + +M ++I+++ + S+R GR+NP +LD+I+VEYYG+P L+ + ++ P+ +
Sbjct: 6 KKFEEKMNKSIEVLLEEYASIRAGRANPHVLDRIKVEYYGTPTPLQQVGNVSVPEPRIIQ 65
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I P++KS LK IEKAI SDLG+ P NDG IRL P+LT ERRKEL K V K+ E KV
Sbjct: 66 ISPWEKSLLKEIEKAINMSDLGINPTNDGSCIRLVFPELTEERRKELVKDVKKKGEACKV 125
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
AVRNIRRDA+ A +KL+K +ED+VKD + +QK+TD+ ++++D + K KE+L V
Sbjct: 126 AVRNIRRDAIDAIKKLEKAGDFTEDDVKDGENKIQKITDKAIERVDKAIEDKSKEILTV 184
>gi|365921592|ref|ZP_09445858.1| ribosome recycling factor [Cardiobacterium valvarum F0432]
gi|364575783|gb|EHM53151.1| ribosome recycling factor [Cardiobacterium valvarum F0432]
Length = 185
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 81/181 (44%), Positives = 131/181 (72%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I KD ARME+++ + + +RTGR+N ++LD ++VEYYGS V L A ++ D S
Sbjct: 5 IFKDAGARMEKSVKSLEHELSKIRTGRANTSLLDHVQVEYYGSMVPLSQAANVSVTDHRS 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L IQ ++++ + IEKAI++SDLG+TPN G+ I + LP LT ERRK+L K+V + E+
Sbjct: 65 LSIQVWERNMIAVIEKAIINSDLGLTPNTAGQTIHINLPPLTEERRKDLVKIVRSEGEQA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVA+RN+RRDA+++ ++L +K+ SED+ + +++QKLTD+Y++++D + +KEKEL++
Sbjct: 125 KVAIRNVRRDAIQSVKQLVNDKQASEDDERRAETEIQKLTDKYVEQVDKVLSEKEKELME 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|375099453|ref|ZP_09745716.1| ribosome recycling factor [Saccharomonospora cyanea NA-134]
gi|374660185|gb|EHR60063.1| ribosome recycling factor [Saccharomonospora cyanea NA-134]
Length = 185
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/178 (44%), Positives = 118/178 (66%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + +ME+ + + + SVRTGR+ PAM +I VEYYG+P L +A +N P++ ++
Sbjct: 8 DAEEKMEKAVSFAKEDLASVRTGRATPAMFSRIVVEYYGAPTPLNQLASVNIPEARMAVV 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+PYD S L +IEKAI SDLG+ P NDG +IR+ +PQLT ERRKE+ KV + EE +V+
Sbjct: 68 KPYDASQLAAIEKAIRDSDLGVNPTNDGNIIRVVIPQLTEERRKEMVKVAKSKGEEARVS 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+R +RR A + +++ K+ + ED V +LQ LTD Y+ ++D + K KE ELL+V
Sbjct: 128 IRGVRRKAKEELDRIAKDGEAGEDEVARAEKELQNLTDRYVHQVDELVKHKEAELLEV 185
>gi|372325346|ref|ZP_09519935.1| Ribosome recycling factor [Oenococcus kitaharae DSM 17330]
gi|366984154|gb|EHN59553.1| Ribosome recycling factor [Oenococcus kitaharae DSM 17330]
Length = 180
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/178 (51%), Positives = 120/178 (67%), Gaps = 3/178 (1%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D+K RM + + ++R GR+NP ML+KI+VEYYG+P L +A I P++ LLI
Sbjct: 6 DLKNRMAKASKAFQNELVNIRAGRANPNMLNKIQVEYYGAPTPLNQLASIQVPEARILLI 65
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
PYDKSSLKSIE+AI +SDLG+TP NDG VIRL +P LT + RK+L K V +AE+ KVA
Sbjct: 66 TPYDKSSLKSIEQAIFASDLGLTPQNDGNVIRLMIPILTEDGRKDLVKQVKAEAEKAKVA 125
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RNIRRD + L+K+K LSED D+QK+ D +K ID I KEKEL+++
Sbjct: 126 SRNIRRDFMN---DLKKDKDLSEDQRHKAEEDVQKVADSEIKDIDQIADNKEKELMEI 180
>gi|256846527|ref|ZP_05551984.1| ribosome recycling factor [Fusobacterium sp. 3_1_36A2]
gi|294784116|ref|ZP_06749417.1| ribosome recycling factor [Fusobacterium sp. 3_1_27]
gi|421144909|ref|ZP_15604811.1| ribosome recycling factor (RRF) [Fusobacterium nucleatum subsp.
fusiforme ATCC 51190]
gi|256718296|gb|EEU31852.1| ribosome recycling factor [Fusobacterium sp. 3_1_36A2]
gi|294488186|gb|EFG35531.1| ribosome recycling factor [Fusobacterium sp. 3_1_27]
gi|395488676|gb|EJG09529.1| ribosome recycling factor (RRF) [Fusobacterium nucleatum subsp.
fusiforme ATCC 51190]
Length = 190
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 85/178 (47%), Positives = 130/178 (73%), Gaps = 2/178 (1%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+ + +M +TI+ V+ F ++R GR+N +MLD ++VE YGS V L I ++ P++ L+
Sbjct: 10 KECEEKMLKTIEAVKEKFTAIRAGRANVSMLDGVKVENYGSEVPLNQIGTVSAPEARLLV 69
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I P+DKS + +EKA+++++LGMTPNNDG VIRL LP+LT+ERRKE K+ +AE GK+
Sbjct: 70 IDPWDKSLISKVEKALLAANLGMTPNNDGRVIRLVLPELTAERRKEYVKLAKNEAENGKI 129
Query: 218 AVRNIRRDALKAYEKLQKEKK--LSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
AVRNIR+D +KL+K+K+ +SED +K + +Q LTD+Y+K+ID + +KEKE+
Sbjct: 130 AVRNIRKDINNHLKKLEKDKENPISEDELKKEETRVQTLTDKYVKEIDDLLAKKEKEI 187
>gi|21242171|ref|NP_641753.1| ribosome recycling factor [Xanthomonas axonopodis pv. citri str.
306]
gi|78047031|ref|YP_363206.1| ribosome recycling factor [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|325929597|ref|ZP_08190711.1| ribosome recycling factor [Xanthomonas perforans 91-118]
gi|346724319|ref|YP_004850988.1| ribosome recycling factor [Xanthomonas axonopodis pv. citrumelo F1]
gi|390989411|ref|ZP_10259709.1| ribosome recycling factor [Xanthomonas axonopodis pv. punicae str.
LMG 859]
gi|418521721|ref|ZP_13087763.1| ribosome recycling factor [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
gi|24418656|sp|Q8PMK8.1|RRF_XANAC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|123585494|sp|Q3BVK7.1|RRF_XANC5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|21107587|gb|AAM36289.1| ribosome recycling factor [Xanthomonas axonopodis pv. citri str.
306]
gi|78035461|emb|CAJ23106.1| ribosome recycling factor [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|325540107|gb|EGD11735.1| ribosome recycling factor [Xanthomonas perforans 91-118]
gi|346649066|gb|AEO41690.1| ribosome recycling factor [Xanthomonas axonopodis pv. citrumelo F1]
gi|372555915|emb|CCF66684.1| ribosome recycling factor [Xanthomonas axonopodis pv. punicae str.
LMG 859]
gi|410702256|gb|EKQ60765.1| ribosome recycling factor [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
Length = 185
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 86/183 (46%), Positives = 127/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I++D + RM ++ID +R + ++RTGR++PA+LD I+V+ YG+ L +A I+ +
Sbjct: 3 TQIKQDAQTRMTKSIDALRHSLTTIRTGRASPALLDGIKVKAYGADTPLNQVASISVSEG 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
SL+I +DK +K +EKAI +SDLG+TP G VIRL LP LT ERRKELSK V + E
Sbjct: 63 RSLVISLFDKGMIKDVEKAIYASDLGLTPTVVGTVIRLNLPPLTEERRKELSKSVHGEGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+ KVA+RNIRRDA + + L K+K ++ED + D+QKLTD+ +K +D + K KE+EL
Sbjct: 123 DSKVAIRNIRRDANQQVKDLLKDKAVTEDEARSAEDDIQKLTDKAIKDVDEVVKGKEQEL 182
Query: 274 LKV 276
+ V
Sbjct: 183 MTV 185
>gi|291523272|emb|CBK81565.1| ribosome recycling factor [Coprococcus catus GD/7]
Length = 185
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 123/174 (70%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++++D + + ++R GR+NP +LDK++V+YYG+P L+ + + P++ L+IQP++
Sbjct: 12 KMQKSLDALEREYTTIRAGRANPHILDKLKVDYYGTPTPLQQVGNVTVPEARVLMIQPWE 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
+K IEKAI++SD+G+TP NDG+ IRL P+LT ERRKEL+K V K+ + K AVRNI
Sbjct: 72 SKLIKDIEKAILASDIGITPTNDGKSIRLVFPELTEERRKELAKDVKKKGDAAKTAVRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD A++K K K++SED +L LQK+TD+Y+ +D + K KE++ V
Sbjct: 132 RRDGNDAFKKSNKAKEISEDEYAELQEKLQKITDKYVAMVDKAVEAKTKEIMTV 185
>gi|421785178|ref|ZP_16221610.1| ribosome recycling factor [Serratia plymuthica A30]
gi|407752593|gb|EKF62744.1| ribosome recycling factor [Serratia plymuthica A30]
Length = 185
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 87/180 (48%), Positives = 128/180 (71%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I KD +RME++++ +T + +RTGR++P++LD I VEYYGS L+ +A + DS +
Sbjct: 5 IRKDADSRMEKSVEAFKTQISKIRTGRASPSILDGIMVEYYGSATPLRQLANVTVEDSRT 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L I +D+S ++EKAI+SSDLG+ P++ G VIR+ LP LT ERRK+L KVV +AE+G
Sbjct: 65 LAINLFDRSLGSAVEKAIMSSDLGLNPSSAGSVIRVPLPPLTEERRKDLIKVVRNEAEQG 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
+VAVRN+RRDA + L K+K++SED + D+QKLTD Y+K +D+ KEKEL++
Sbjct: 125 RVAVRNVRRDANDKVKALLKDKEISEDEDRRSQDDVQKLTDAYIKLLDAALADKEKELME 184
>gi|395242460|ref|ZP_10419457.1| Ribosome-recycling factor [Lactobacillus pasteurii CRBIP 24.76]
gi|394480192|emb|CCI85697.1| Ribosome-recycling factor [Lactobacillus pasteurii CRBIP 24.76]
Length = 187
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 127/173 (73%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K ME++I + + N S+R G +N +L+ I+V+YYG+P L ++ ++ P+ LLI P
Sbjct: 11 KENMEKSIKVFQRNLASIRAGVANAGLLEGIQVDYYGAPTPLTQMSSVSIPEPRVLLITP 70
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YD +SL +IE A+++S+LG+TP NDG+VIRL +PQLT ERR+E++K V K+AE+ K+AVR
Sbjct: 71 YDINSLDNIEHALLASNLGLTPANDGKVIRLVIPQLTGERRQEIAKQVGKEAEDAKIAVR 130
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
N+RRDA+ A ++L+ + +++ED ++L +QK+TD+ KKID + +K KE+
Sbjct: 131 NVRRDAMNALKRLKNDDEITEDEQRNLEKQVQKVTDDATKKIDQLADEKRKEI 183
>gi|326693032|ref|ZP_08230037.1| ribosome recycling factor [Leuconostoc argentinum KCTC 3773]
gi|339449759|ref|ZP_08653129.1| ribosome recycling factor [Leuconostoc lactis KCTC 3528]
Length = 181
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 87/178 (48%), Positives = 125/178 (70%), Gaps = 3/178 (1%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D KARM+ D ++ S+RTGR+NP +LD+IEVEYYG+ L +A I+ P++ LLI
Sbjct: 7 DAKARMQGAQDALQRELGSIRTGRANPRILDRIEVEYYGAMTPLNQVASISVPEARILLI 66
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
P+DKS L I +AI SDLG+ P +DG ++RL +PQ+T E RKEL+K V +AE+ KV+
Sbjct: 67 TPFDKSVLDEIIRAINMSDLGLNPASDGNIVRLAIPQMTEEGRKELAKQVKAEAEKAKVS 126
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRN+RRDA+ + ++K+K+L ED + +QKLTD+ +K ID+I +KEKELL +
Sbjct: 127 VRNVRRDAM---DSVKKDKELPEDVARKAEDAIQKLTDDNIKAIDAIAAEKEKELLTI 181
>gi|410667467|ref|YP_006919838.1| ribosome-recycling factor Frr [Thermacetogenium phaeum DSM 12270]
gi|409105214|gb|AFV11339.1| ribosome-recycling factor Frr [Thermacetogenium phaeum DSM 12270]
Length = 185
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 132/179 (73%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K + +M++T+D++ + ++R GR+ PA+LDK+ +YYG+P + +A I+ P+ L+
Sbjct: 7 KQAEMKMKKTVDLLVKDLATLRAGRATPALLDKVYADYYGTPTPINQMATISVPEPRLLV 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D++ L IEKAI+ SDLG+TP +DG VIRL +P LT E+RK+L K++ K+AEEG++
Sbjct: 67 IQPWDRNMLSQIEKAILKSDLGITPVSDGNVIRLNIPPLTQEKRKDLVKIINKKAEEGRI 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RN+RR+A + + +K+ +LSED + ++QKLTD+Y+ KID I + KEKE++++
Sbjct: 127 AIRNLRREANERVKAAEKKGELSEDEARRYLDEVQKLTDKYIDKIDQIAESKEKEIMEL 185
>gi|335419068|ref|ZP_08550126.1| ribosome recycling factor [Salinisphaera shabanensis E1L3A]
gi|334897203|gb|EGM35339.1| ribosome recycling factor [Salinisphaera shabanensis E1L3A]
Length = 185
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 81/181 (44%), Positives = 133/181 (73%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I D + RM++TI+++R NF+ +RTGR++ ++LD + V+YYGS V L A I+ D+ +
Sbjct: 5 IYSDAQQRMDKTINVMRDNFSKIRTGRASTSLLDHVTVDYYGSEVPLNQAANISLEDART 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
+ IQP++KS ++ +EKAI+ +DLG+ P+ G+VIR+ LP LT +RRK+L KV+ +AE+G
Sbjct: 65 ITIQPWEKSMVQPVEKAIMKADLGLNPSTAGQVIRVVLPPLTEDRRKDLVKVIRAEAEDG 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
+VA+RNIRRDA ++L EK++S D+ + +QKLTD+++++ID + +KEKE++
Sbjct: 125 RVAIRNIRRDANSTLKELVSEKEISADDQHGGEARIQKLTDQHIERIDGLLDEKEKEIMT 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|270264817|ref|ZP_06193081.1| ribosome-recycling factor [Serratia odorifera 4Rx13]
gi|270041115|gb|EFA14215.1| ribosome-recycling factor [Serratia odorifera 4Rx13]
Length = 199
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 87/180 (48%), Positives = 128/180 (71%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I KD +RME++++ +T + +RTGR++P++LD I VEYYGS L+ +A + DS +
Sbjct: 19 IRKDADSRMEKSVEAFKTQISKIRTGRASPSILDGIMVEYYGSATPLRQLANVTVEDSRT 78
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L I +D+S ++EKAI+SSDLG+ P++ G VIR+ LP LT ERRK+L KVV +AE+G
Sbjct: 79 LAINLFDRSLGSAVEKAIMSSDLGLNPSSAGSVIRVPLPPLTEERRKDLIKVVRNEAEQG 138
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
+VAVRN+RRDA + L K+K++SED + D+QKLTD Y+K +D+ KEKEL++
Sbjct: 139 RVAVRNVRRDANDKVKALLKDKEISEDEDRRSQDDVQKLTDAYIKLLDAALADKEKELME 198
>gi|331090948|ref|ZP_08339790.1| ribosome-recycling factor [Lachnospiraceae bacterium 2_1_46FAA]
gi|330405170|gb|EGG84706.1| ribosome-recycling factor [Lachnospiraceae bacterium 2_1_46FAA]
Length = 183
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 124/174 (71%), Gaps = 1/174 (0%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M ++ + + ++R GR+NP +LDK+ V+YYG P ++ A I+ P+ + IQP++
Sbjct: 11 KMTKSYNSLVGELATIRAGRANPHVLDKLTVDYYGVPTPIQQAANISVPEPRMIQIQPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS +K IEKAI++SD+G+ P NDG VIRL P+LT ERRKEL+K V K+ E+ KVA+RNI
Sbjct: 71 KSMVKEIEKAILTSDIGINPTNDGSVIRLVFPELTEERRKELAKDVKKKGEQAKVAIRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD ++KL K ++SED +KDL +LQKLTD+Y+K ID ++K KE++ V
Sbjct: 131 RRDGNDTFKKL-KGTEVSEDEIKDLEDELQKLTDKYIKDIDKAVEEKSKEVMTV 183
>gi|312868288|ref|ZP_07728488.1| ribosome recycling factor [Streptococcus parasanguinis F0405]
gi|337282426|ref|YP_004621897.1| ribosome recycling factor [Streptococcus parasanguinis ATCC 15912]
gi|387880001|ref|YP_006310304.1| ribosome recycling factor [Streptococcus parasanguinis FW213]
gi|414155983|ref|ZP_11412292.1| ribosome-recycling factor [Streptococcus sp. F0442]
gi|417918268|ref|ZP_12561820.1| ribosome recycling factor [Streptococcus parasanguinis SK236]
gi|419800992|ref|ZP_14326241.1| ribosome recycling factor [Streptococcus parasanguinis F0449]
gi|311096033|gb|EFQ54277.1| ribosome recycling factor [Streptococcus parasanguinis F0405]
gi|335370019|gb|AEH55969.1| ribosome recycling factor [Streptococcus parasanguinis ATCC 15912]
gi|342828723|gb|EGU63089.1| ribosome recycling factor [Streptococcus parasanguinis SK236]
gi|385693069|gb|EIG23726.1| ribosome recycling factor [Streptococcus parasanguinis F0449]
gi|386793451|gb|AFJ26486.1| ribosome recycling factor [Streptococcus parasanguinis FW213]
gi|410872192|gb|EKS20136.1| ribosome-recycling factor [Streptococcus sp. F0442]
Length = 185
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 86/176 (48%), Positives = 122/176 (69%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K RM ++ + F S+R GR+N ++LD+I VEYYG L +A I P++ LLI P
Sbjct: 10 KERMTQSHQSLGREFGSIRAGRANASLLDRIFVEYYGVETPLNQLASITIPEARVLLITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
+DKSSLK IE +I +SDLG+TP NDG VIRL +P LT E R++L+K V K E KVA+R
Sbjct: 70 FDKSSLKDIEHSINASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAIR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRRDA+ +K +K K+++ED +K L ++QK+TD+ +K +D + KEKEL++V
Sbjct: 130 NIRRDAMDEAKKQEKAKEITEDELKGLEKEIQKVTDDAVKHVDEMTAHKEKELMEV 185
>gi|260588561|ref|ZP_05854474.1| ribosome recycling factor [Blautia hansenii DSM 20583]
gi|331082136|ref|ZP_08331264.1| ribosome recycling factor [Lachnospiraceae bacterium 6_1_63FAA]
gi|260541036|gb|EEX21605.1| ribosome recycling factor [Blautia hansenii DSM 20583]
gi|330405731|gb|EGG85261.1| ribosome recycling factor [Lachnospiraceae bacterium 6_1_63FAA]
Length = 185
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 127/174 (72%), Gaps = 1/174 (0%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +T++ + ++R GR+NP +LDK+ V+YYG+P L+ +A I P++ + IQP++
Sbjct: 13 KMTKTLEGLTKELVTIRAGRANPHILDKLTVDYYGTPTPLQQVANITVPEARMIQIQPWE 72
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
S +K I KAI+SSDL + PN+DG++IRL LP+LT ERRKEL K V K+ E KVAVRN+
Sbjct: 73 ASLIKEISKAILSSDLNLNPNSDGKIIRLVLPELTEERRKELVKDVKKKGEAAKVAVRNV 132
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA A++KL K+ +SED +K+L +QK+TD+++K+I+ ++K KE+L V
Sbjct: 133 RRDANDAFKKLAKQ-DVSEDEIKELEEQIQKITDKFVKEIEKAVEEKSKEILTV 185
>gi|237741356|ref|ZP_04571837.1| ribosome Recycling Factor [Fusobacterium sp. 4_1_13]
gi|229430888|gb|EEO41100.1| ribosome Recycling Factor [Fusobacterium sp. 4_1_13]
Length = 190
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 86/178 (48%), Positives = 130/178 (73%), Gaps = 2/178 (1%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+ + +M +TI+ V+ F ++R GR+N +MLD I+VE YGS V L I ++ P++ L+
Sbjct: 10 KECEEKMLKTIEAVKEKFTAIRAGRANVSMLDGIKVENYGSEVPLNQIGTVSAPEARLLV 69
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I P+DKS + IEKA+++++LGMTPNNDG VIRL LP+LT++RRKE K+ +AE GK+
Sbjct: 70 IDPWDKSLISKIEKALLAANLGMTPNNDGRVIRLVLPELTADRRKEYVKLAKNEAENGKI 129
Query: 218 AVRNIRRDALKAYEKLQKEKK--LSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
AVRNIR+D +KL+K+K+ +SED +K + +Q LTD+Y+K+ID + +KEKE+
Sbjct: 130 AVRNIRKDINNHLKKLEKDKENPISEDELKKEETRVQTLTDKYVKEIDDLLAKKEKEI 187
>gi|433463488|ref|ZP_20421041.1| ribosome recycling factor [Halobacillus sp. BAB-2008]
gi|432187488|gb|ELK44773.1| ribosome recycling factor [Halobacillus sp. BAB-2008]
Length = 185
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 79/178 (44%), Positives = 129/178 (72%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ K +ME+ + +VR GR+NP++LD + V+YYG+ L +AQ++ P+ L+I
Sbjct: 8 ETKQQMEQAVQAFSRQLATVRAGRANPSILDNVYVDYYGAATPLNQLAQVSAPEPRLLVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
PYDK+++ IEKAI +DLG++P++DG V+R+ +P LT ERRK+L+KVV K +EE KV
Sbjct: 68 TPYDKTAIAEIEKAIQKADLGLSPSSDGNVVRINIPALTEERRKDLAKVVGKYSEESKVQ 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRD+ +KL+K+ +L+ED+++ D+QK+TD+++ KID + K KE+E+++V
Sbjct: 128 IRNIRRDSNDKLKKLEKDGELTEDDLRSYQEDVQKVTDQHIVKIDELAKTKEEEIMEV 185
>gi|421100810|ref|ZP_15561431.1| ribosome recycling factor [Leptospira borgpetersenii str.
200901122]
gi|410796208|gb|EKR98346.1| ribosome recycling factor [Leptospira borgpetersenii str.
200901122]
Length = 184
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 129/178 (72%), Gaps = 4/178 (2%)
Query: 100 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQ 159
+K +M++TID+++ +F ++RTGR+NP++++ I V+YYG+ + + I+ P+ L+I
Sbjct: 10 MKTKMDKTIDLLKKDFGTIRTGRANPSLVEDIRVDYYGTLTPINQLGNISVPEPRILVIS 69
Query: 160 PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAV 219
PYDK +K IEKAI +S LG+ P+NDG VIR+ +P+LT ERRKEL+KVV ++EE KVA+
Sbjct: 70 PYDKGIMKDIEKAIQASGLGLQPSNDGVVIRIIIPELTGERRKELAKVVKSKSEEKKVAI 129
Query: 220 RNIRRDALKAYEKLQKE-KKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RNIRRDA+ E L+K + LS+D +K + +QK TD Y+ KI ++ +KEKE+ +
Sbjct: 130 RNIRRDAM---EDLKKHTEGLSQDEIKTVQDQIQKTTDSYIDKISALTAEKEKEITTI 184
>gi|254448744|ref|ZP_05062201.1| ribosome recycling factor [gamma proteobacterium HTCC5015]
gi|198261585|gb|EDY85873.1| ribosome recycling factor [gamma proteobacterium HTCC5015]
Length = 185
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 79/183 (43%), Positives = 134/183 (73%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I+KD ++RM+++++ ++ + +RTGR++P++L+ I+VEYYG+ +K +A I D+
Sbjct: 3 NDIQKDAESRMKKSLESLQGDLTRIRTGRAHPSLLEHIQVEYYGAKTPIKQVANITVEDA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L++ P++K +++IEKAI+ SDLG+ P + G V+R+ LP LT ERRKE K+V ++ E
Sbjct: 63 RTLVVTPWEKDMVQTIEKAIMESDLGLNPTSAGTVMRIPLPPLTEERRKEFVKLVRQEGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+GKVA+RNIRRDA ++ L KEK++SED + +QKLTD+Y+ ++D + KE+EL
Sbjct: 123 QGKVAIRNIRRDANGDFKDLLKEKEISEDEQRRAEEVIQKLTDKYVAEVDGLLAAKEQEL 182
Query: 274 LKV 276
++V
Sbjct: 183 MEV 185
>gi|297566374|ref|YP_003685346.1| ribosome recycling factor [Meiothermus silvanus DSM 9946]
gi|296850823|gb|ADH63838.1| ribosome recycling factor [Meiothermus silvanus DSM 9946]
Length = 185
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 126/176 (71%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ + M++ +D + + + +RTGR+NPA+L I V+YYGS + ++ + I PD+ +L+I
Sbjct: 8 ETRNHMQKALDALEHHLSGLRTGRANPAILKSIRVDYYGSLMPIEQLGTITAPDARTLVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
Q +D +LKSIEKAI SDLG+ PNN G+ + +++P LT ERR+EL K V AEE +VA
Sbjct: 68 QSWDAGALKSIEKAIRDSDLGLNPNNKGDSLFISIPPLTEERRRELVKAVKHYAEEARVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
VRN RR+A+ +KL KE+ LSED++K +++QK+TDE++ K+DS ++KE E+L
Sbjct: 128 VRNARREAVDKAKKLGKEQHLSEDDIKRAEAEIQKITDEFIGKVDSALEKKEHEIL 183
>gi|429735383|ref|ZP_19269350.1| ribosome recycling factor [Selenomonas sp. oral taxon 138 str.
F0429]
gi|429159078|gb|EKY01599.1| ribosome recycling factor [Selenomonas sp. oral taxon 138 str.
F0429]
Length = 185
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 127/176 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
+A M + I+ +R F+S+R GR+ P +LDK+ V YYG+P S+ +A++ P+ ++I P
Sbjct: 10 EASMNKAIEALRREFSSLRAGRATPNLLDKVMVPYYGTPTSVNQLAKVTVPEPHMIVITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
++KS L IE AI SDLG++PN+DG VIRL +PQ T ERRKEL K V K+ EE KVA+R
Sbjct: 70 WEKSILHEIEIAISKSDLGLSPNSDGTVIRLAIPQPTQERRKELIKTVGKKTEEAKVALR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRRDA +A +KL+K+K+++ED K +QKL D+++K+++ + KEKE++++
Sbjct: 130 NIRRDANEAIKKLEKDKEINEDESKRGQDSVQKLVDKFVKQMEEMRAAKEKEVMEI 185
>gi|333928806|ref|YP_004502385.1| ribosome-recycling factor [Serratia sp. AS12]
gi|333933759|ref|YP_004507337.1| ribosome-recycling factor [Serratia plymuthica AS9]
gi|386330629|ref|YP_006026799.1| Ribosome-recycling factor [Serratia sp. AS13]
gi|333475366|gb|AEF47076.1| Ribosome-recycling factor [Serratia plymuthica AS9]
gi|333492866|gb|AEF52028.1| Ribosome-recycling factor [Serratia sp. AS12]
gi|333962962|gb|AEG29735.1| Ribosome-recycling factor [Serratia sp. AS13]
Length = 199
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 87/179 (48%), Positives = 127/179 (70%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I KD +RME++++ +T + +RTGR++P++LD I VEYYGS L+ +A + DS +
Sbjct: 19 IRKDADSRMEKSVEAFKTQISKIRTGRASPSILDGIMVEYYGSATPLRQLANVTVEDSRT 78
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L I +D+S ++EKAI+SSDLG+ P++ G VIR+ LP LT ERRK+L KVV +AE+G
Sbjct: 79 LAINLFDRSLGSAVEKAIMSSDLGLNPSSAGSVIRVPLPPLTEERRKDLIKVVRNEAEQG 138
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
+VAVRN+RRDA + L K+K++SED + D+QKLTD Y+K +D+ KEKEL+
Sbjct: 139 RVAVRNVRRDANDKVKALLKDKEISEDEDRRSQDDVQKLTDAYIKLLDAALADKEKELM 197
>gi|357057433|ref|ZP_09118293.1| ribosome-recycling factor [Selenomonas infelix ATCC 43532]
gi|355375337|gb|EHG22624.1| ribosome-recycling factor [Selenomonas infelix ATCC 43532]
Length = 185
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 127/176 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
+A M + I+ +R F+S+R GR+ P +LDK+ V YYG+P S+ +A++ P+ ++I P
Sbjct: 10 EASMNKAIEALRREFSSLRAGRATPNLLDKVMVPYYGTPTSVNQLAKVTVPEPHMIVITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
++KS L IE AI SDLG++PN+DG VIRL +PQ T ERRKEL K V K+ EE KVA+R
Sbjct: 70 WEKSILHEIEIAISKSDLGLSPNSDGTVIRLAIPQPTQERRKELIKTVGKKTEEAKVALR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRRDA +A +KL+K+K+++ED K +QKL D+++K+++ + KEKE++++
Sbjct: 130 NIRRDANEAIKKLEKDKEINEDESKRGQDSVQKLVDKFVKQMEEMRAAKEKEVMEI 185
>gi|302038069|ref|YP_003798391.1| ribosome recycling factor [Candidatus Nitrospira defluvii]
gi|300606133|emb|CBK42466.1| Ribosome recycling factor [Candidatus Nitrospira defluvii]
Length = 187
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 82/181 (45%), Positives = 132/181 (72%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
+++ V +M+ I+ ++ + +RTGR++ A++D I V+YYG+ LK +A + TP++
Sbjct: 7 VKQRVTEKMDHAIEHLKRDLAGLRTGRASVALVDGIRVDYYGTMTPLKQVANVATPEARL 66
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
+ IQP++++ ++ IEKAI +SDLG+TP+NDG++IR+ LP LT ERRKEL KV K EE
Sbjct: 67 ITIQPWEQNLIREIEKAIQTSDLGLTPSNDGKLIRIPLPPLTEERRKELIKVCKKHGEEV 126
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KV +R RRD + +KLQK+ KL+ED ++ +++QKLTD+Y++KID + K+KE E+L+
Sbjct: 127 KVQIRGFRRDGNEELKKLQKDTKLTEDELRKSEAEIQKLTDQYVQKIDDVMKKKEGEILE 186
Query: 276 V 276
V
Sbjct: 187 V 187
>gi|421489891|ref|ZP_15937266.1| ribosome recycling factor [Streptococcus anginosus SK1138]
gi|400373904|gb|EJP26828.1| ribosome recycling factor [Streptococcus anginosus SK1138]
Length = 185
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 125/183 (68%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K RM ++ + F S+R GR+N ++LD+I VEYYG L IA I P++
Sbjct: 3 NAIVEKAKERMTQSHQSLAREFGSIRAGRANASLLDRISVEYYGVETPLNQIASITIPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+ P+DKSS+K IE A+ +SDLG+TP +DG VIRL +P LT E R+ L+K V K E
Sbjct: 63 RVLLVTPFDKSSIKDIEHALNASDLGITPASDGTVIRLVIPALTEETRRNLAKEVKKVGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
K+A+RNIRRDA+ +K +K K+++ED +K L D+QK+TDE +K ID + KEKEL
Sbjct: 123 NAKIAIRNIRRDAMDEAKKQEKAKEITEDELKILEKDIQKVTDEAVKHIDEMTASKEKEL 182
Query: 274 LKV 276
++V
Sbjct: 183 IEV 185
>gi|335046798|ref|ZP_08539821.1| ribosome recycling factor [Oribacterium sp. oral taxon 108 str.
F0425]
gi|363897315|ref|ZP_09323854.1| ribosome-recycling factor [Oribacterium sp. ACB7]
gi|363899292|ref|ZP_09325802.1| ribosome-recycling factor [Oribacterium sp. ACB1]
gi|395209658|ref|ZP_10398752.1| ribosome recycling factor [Oribacterium sp. ACB8]
gi|333760584|gb|EGL38141.1| ribosome recycling factor [Oribacterium sp. oral taxon 108 str.
F0425]
gi|361958812|gb|EHL12109.1| ribosome-recycling factor [Oribacterium sp. ACB7]
gi|361959129|gb|EHL12425.1| ribosome-recycling factor [Oribacterium sp. ACB1]
gi|394705289|gb|EJF12818.1| ribosome recycling factor [Oribacterium sp. ACB8]
Length = 184
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 123/174 (70%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +T D + + ++R GR+NP +LD+I V+YYG+ ++ + I+ P++ + IQP+D
Sbjct: 11 KMHKTHDNLMSELATIRAGRANPHVLDRITVDYYGTQTPIQQVGNISVPEARIIQIQPWD 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS +K IEKAI SDLG+ P NDG+VIRL P+LT ERRKEL+K V K+ E KVA+RNI
Sbjct: 71 KSVMKEIEKAINMSDLGINPTNDGQVIRLVFPELTEERRKELTKDVKKKGEAAKVAIRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA+ +KL+K +++ED++ + D+Q+LTD ++KID + K KELL V
Sbjct: 131 RRDAMDLAKKLEKNAEITEDDLARQTKDIQELTDHMIEKIDQSVEAKNKELLTV 184
>gi|452850714|ref|YP_007492398.1| Ribosome-recycling factor [Desulfovibrio piezophilus]
gi|451894368|emb|CCH47247.1| Ribosome-recycling factor [Desulfovibrio piezophilus]
Length = 184
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 81/182 (44%), Positives = 129/182 (70%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
S+ +D K RM + + +F +RTGR+ +++D I V+YYG+P + +A ++ PDS
Sbjct: 3 SLLEDGKKRMTGALTALDKDFGKLRTGRATTSLVDNIVVDYYGTPTPISQLASVSIPDSK 62
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
++ IQP+DK + ++EKAI++SDLG+TP NDG++IR+ +P LT ERRK+L K+ K EE
Sbjct: 63 TVSIQPWDKGAFGAVEKAIMNSDLGLTPVNDGKIIRIGIPPLTEERRKDLVKIAKKYTEE 122
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
K+A+RN+RRD + + ++KEK +SED K +D+QKLTD+Y+K+ D + KEKE+L
Sbjct: 123 CKIAIRNVRRDLNDSLKAMEKEKDISEDEKKKGEADVQKLTDDYVKESDQAFVAKEKEIL 182
Query: 275 KV 276
++
Sbjct: 183 EI 184
>gi|78356175|ref|YP_387624.1| ribosome recycling factor [Desulfovibrio alaskensis G20]
gi|123552884|sp|Q313G7.1|RRF_DESDG RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|78218580|gb|ABB37929.1| ribosome recycling factor [Desulfovibrio alaskensis G20]
Length = 184
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 127/174 (72%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RME+ + + F +RTGR++ +++D I+V+YYG+P + +A + PDS ++ IQP+D
Sbjct: 11 RMEKAVAALDREFGRLRTGRASTSLVDSIKVDYYGTPTPINQLASVAVPDSRTITIQPWD 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
+ + +EKAI+ SDLG+TP NDG++IR+++P LT ERRKEL KV K E+ KVAVRNI
Sbjct: 71 RGAFALVEKAIMQSDLGLTPINDGKIIRISMPPLTEERRKELVKVAKKYTEDAKVAVRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA + +K++K+K ++ED++K ++QKLTD ++ K + + +KEKE+++V
Sbjct: 131 RRDANEQIKKMEKDKAITEDDMKRGQDEVQKLTDAFVAKSEKVLAKKEKEIMEV 184
>gi|421766169|ref|ZP_16202946.1| Ribosome recycling factor [Lactococcus garvieae DCC43]
gi|407625338|gb|EKF52044.1| Ribosome recycling factor [Lactococcus garvieae DCC43]
Length = 185
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 124/178 (69%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ K RM+ +++ ++ + +R GR+N ++LD+I VEYYG+P L +A I P++ L+I
Sbjct: 8 NAKERMKNSLNSLQRDLGHIRAGRANASLLDRISVEYYGAPTPLNQLASITIPEARVLMI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
P+DK+ LK IE A+ +SD+G+TP NDG VIRL +P LT ERRKEL K + K E KVA
Sbjct: 68 TPFDKTILKEIEHALNASDIGITPANDGSVIRLVIPMLTEERRKELVKEMGKYIEGAKVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ +K +K K+++ED++K L D+Q TD +K+ D + +KEKELL V
Sbjct: 128 IRNIRRDAIDTAKKQEKAKEITEDDLKVLEKDIQTATDNAVKEADKMAAEKEKELLDV 185
>gi|325282615|ref|YP_004255156.1| Ribosome-recycling factor [Deinococcus proteolyticus MRP]
gi|324314424|gb|ADY25539.1| Ribosome-recycling factor [Deinococcus proteolyticus MRP]
Length = 183
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 81/184 (44%), Positives = 128/184 (69%), Gaps = 3/184 (1%)
Query: 91 AEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINT 150
++ +SI KD + RM ++I+ + +N +RTGR+NP +L K+ VEY+GS + + +A IN
Sbjct: 2 SDTNSIYKDARERMGKSIEALESNLGVLRTGRANPGILKKVMVEYFGSTMPIDQVASINA 61
Query: 151 PDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 210
PD+ +L + P+D+ +L IEKAI SDLG+ PNN G++I +++P LT ERRKE+ K
Sbjct: 62 PDARTLTVTPWDRGALNPIEKAIRDSDLGLNPNNKGDMIFISIPALTEERRKEMVKNAKS 121
Query: 211 QAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKE 270
AEE ++++RN+R+ AL +KL L ED VK +++QK+TDEY+KK+D ++ +KE
Sbjct: 122 YAEEARISIRNVRKSALDEVKKLD---DLGEDEVKRAEAEVQKITDEYVKKVDEVFDRKE 178
Query: 271 KELL 274
E+L
Sbjct: 179 AEIL 182
>gi|347531718|ref|YP_004838481.1| ribosome recycling factor [Roseburia hominis A2-183]
gi|345501866|gb|AEN96549.1| ribosome recycling factor [Roseburia hominis A2-183]
Length = 183
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 123/174 (70%), Gaps = 1/174 (0%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +T++ + F +R GR+NP +LDK+ V+YYG+P +++ +A ++ P+ + IQP++
Sbjct: 11 KMGKTMNNLAEEFGGIRAGRANPHVLDKLRVDYYGTPTAIQQVANVSVPEPRMIQIQPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
S +K IEKAI++SDLG+ P NDG+ +RL P+LT ERRKEL+K V K+ E KVA+RNI
Sbjct: 71 ASMVKEIEKAILTSDLGINPTNDGKTVRLLFPELTEERRKELAKDVKKKGENAKVAIRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA +++KL KE +SED +K L QK+TD+Y+ +D + K KE+L V
Sbjct: 131 RRDANDSFKKLAKE-DVSEDEIKQLEDQAQKMTDKYIADVDRAVEAKTKEILTV 183
>gi|358465908|ref|ZP_09175793.1| hypothetical protein HMPREF9093_00253 [Fusobacterium sp. oral taxon
370 str. F0437]
gi|357069613|gb|EHI79506.1| hypothetical protein HMPREF9093_00253 [Fusobacterium sp. oral taxon
370 str. F0437]
Length = 190
Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 86/181 (47%), Positives = 130/181 (71%), Gaps = 2/181 (1%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+ + +M +TI+ V+ F S+R GR+N AMLD ++VE YGS L + ++ P++ L+
Sbjct: 10 KECEDKMLKTIESVKERFTSIRAGRANVAMLDAVKVENYGSDAPLNQVGTVSAPEARLLV 69
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I P+DK+ + IEKAI+++++GMTPNNDG VIRL LP+LT+ERRKE K+ +AE GK+
Sbjct: 70 IDPWDKTLIPKIEKAILAANIGMTPNNDGRVIRLVLPELTAERRKEYVKLAKTEAENGKI 129
Query: 218 AVRNIRRDALKAYEKLQKEKK--LSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
AVRNIR+D +KL+K+K+ +SED +K + +Q LTD+Y+K+ID + +KEKE+
Sbjct: 130 AVRNIRKDINNHLKKLEKDKENPISEDELKKEETHVQTLTDKYIKEIDELLAKKEKEITT 189
Query: 276 V 276
V
Sbjct: 190 V 190
>gi|384427296|ref|YP_005636654.1| ribosome recycling factor [Xanthomonas campestris pv. raphani 756C]
gi|341936397|gb|AEL06536.1| ribosome recycling factor [Xanthomonas campestris pv. raphani 756C]
Length = 185
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 86/183 (46%), Positives = 128/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I+++ + RM ++ID +R + +VRTGR++PA+LD I+V+ YG+ L +A I+ +
Sbjct: 3 NQIKQEAQTRMTKSIDALRHSLTTVRTGRASPALLDNIKVKAYGTDTPLNQVASISVSEG 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
SL+I +DK +K +EKAI +SDLG+TP G VIRL LP LT ERRKELSK V + E
Sbjct: 63 RSLVISLFDKGMIKDVEKAIYASDLGLTPTVVGTVIRLNLPPLTEERRKELSKSVHGEGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+ KVA+RNIRRDA + + L K+K+++ED + D+QKLTD+ +K +D + K KE+EL
Sbjct: 123 DAKVAIRNIRRDANQQVKDLLKDKQVTEDEARGAEDDIQKLTDKAIKDVDEVVKGKEQEL 182
Query: 274 LKV 276
+ V
Sbjct: 183 MTV 185
>gi|116512953|ref|YP_811860.1| ribosome recycling factor [Lactococcus lactis subsp. cremoris SK11]
gi|385839288|ref|YP_005876918.1| Ribosome recycling factor [Lactococcus lactis subsp. cremoris A76]
gi|414075026|ref|YP_007000243.1| ribosome recycling factor [Lactococcus lactis subsp. cremoris
UC509.9]
gi|123320141|sp|Q02WC5.1|RRF_LACLS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|116108607|gb|ABJ73747.1| ribosome recycling factor [Lactococcus lactis subsp. cremoris SK11]
gi|358750516|gb|AEU41495.1| Ribosome recycling factor [Lactococcus lactis subsp. cremoris A76]
gi|413974946|gb|AFW92410.1| ribosome recycling factor [Lactococcus lactis subsp. cremoris
UC509.9]
Length = 185
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 125/174 (71%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM+ ++ ++ + +R GR+N ++LD+++V YYG+P L +A I P++ L++ P+D
Sbjct: 12 RMKHSLASLQRDLGHLRAGRANASLLDRVQVVYYGAPTPLNQLASITIPEARVLMVTPFD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS LK IEK++ SDLG+TP NDG VIRL +P LT ERR+EL K + K E KVA+RNI
Sbjct: 72 KSILKDIEKSLYESDLGITPANDGSVIRLVIPMLTEERRRELVKEMGKYIESAKVAIRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA+ +K +K K+++ED++KDL +++QK+TD+ +K+ D + KEKELL +
Sbjct: 132 RRDAMDTAKKSEKAKEITEDDLKDLENEIQKVTDDAVKEADRLASVKEKELLDI 185
>gi|81428873|ref|YP_395873.1| ribosome recycling factor [Lactobacillus sakei subsp. sakei 23K]
gi|123564051|sp|Q38W67.1|RRF_LACSS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|78610515|emb|CAI55566.1| Ribosome recycling factor (ribosome releasing factor) (RRF)
[Lactobacillus sakei subsp. sakei 23K]
Length = 185
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 84/173 (48%), Positives = 119/173 (68%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K ME+ +R +R GR+N ++++++ VEYYG+ L IA I P++ LLI P
Sbjct: 10 KENMEKAEASLRRTLGQIRAGRANASLVNRVNVEYYGAMTPLNQIAAITIPEARVLLITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK +L+ IEKA+ ++D+G++P NDG VIRL +PQLT ERRKE++K V K+AE KV VR
Sbjct: 70 YDKGALEDIEKALYTADIGISPANDGSVIRLVIPQLTGERRKEIAKEVGKEAELAKVVVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
N RRDA+ +K +K ++SED + DL +Q LT+E KKID+I K KEKE+
Sbjct: 130 NARRDAMDNLKKAEKASEISEDEMHDLEEQVQNLTNEATKKIDAISKDKEKEI 182
>gi|332799211|ref|YP_004460710.1| Ribosome-recycling factor [Tepidanaerobacter acetatoxydans Re1]
gi|438002335|ref|YP_007272078.1| Ribosome recycling factor [Tepidanaerobacter acetatoxydans Re1]
gi|332696946|gb|AEE91403.1| Ribosome-recycling factor [Tepidanaerobacter acetatoxydans Re1]
gi|432179129|emb|CCP26102.1| Ribosome recycling factor [Tepidanaerobacter acetatoxydans Re1]
Length = 185
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 84/185 (45%), Positives = 133/185 (71%), Gaps = 4/185 (2%)
Query: 96 IEKDVKARMERTIDMVRTN----FNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTP 151
++K + ME ++ V N F ++R GR++ A+LDKI V+YYGSP + +A ++ P
Sbjct: 1 MDKKIYTEMENQMNEVLVNLKSEFTTIRAGRASAALLDKIYVDYYGSPTPVNQVASVSVP 60
Query: 152 DSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 211
+ +LIQP+D L IEKAI+ SDLG+TPNNDG+VIRL LP+LT+ERR+EL K+ K+
Sbjct: 61 EPKMILIQPWDLKMLGVIEKAILKSDLGLTPNNDGKVIRLILPELTAERRQELVKLSKKK 120
Query: 212 AEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEK 271
AEE KV++RNIRR+ +K++K +++SED++K ++QK+TD+Y+ +++ I KEK
Sbjct: 121 AEEAKVSIRNIRREYNDVLKKMEKNREISEDDLKRSQEEIQKITDKYIDEVEKILANKEK 180
Query: 272 ELLKV 276
++++V
Sbjct: 181 DIMEV 185
>gi|383936723|ref|ZP_09990144.1| ribosome recycling factor [Rheinheimera nanhaiensis E407-8]
gi|383702151|dbj|GAB60235.1| ribosome recycling factor [Rheinheimera nanhaiensis E407-8]
Length = 185
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 84/183 (45%), Positives = 130/183 (71%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I KD K RME++++ ++ + VRTGR++P++LD I V YYG+ L+ + ++ D+
Sbjct: 3 NDIIKDSKVRMEKSVEALKVQLSKVRTGRAHPSLLDGIMVSYYGADTPLRQVGNVSIEDA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L I +DKS ++EKAI++SDLG+ P + G +IR+ LP LT ERRK L K+V +AE
Sbjct: 63 RTLAITVFDKSLTAAVEKAIMASDLGLNPMSAGTIIRVPLPPLTEERRKSLVKLVRGEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
G+VAVRNIRRDA + LQK+K +SED+ + + ++QK+TD ++KKID + +KEKEL
Sbjct: 123 NGRVAVRNIRRDANADLKTLQKDKAISEDDERRATEEIQKITDSFVKKIDEVLAEKEKEL 182
Query: 274 LKV 276
++V
Sbjct: 183 MEV 185
>gi|408356831|ref|YP_006845362.1| ribosome-recycling factor [Amphibacillus xylanus NBRC 15112]
gi|407727602|dbj|BAM47600.1| ribosome-recycling factor [Amphibacillus xylanus NBRC 15112]
Length = 185
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 132/182 (72%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
+I K+++ RM++ I + + +VR GR+NPA+L+ + V+YYG+P L +A I P++
Sbjct: 4 AIIKEIQQRMDQAIQSFKRSLATVRAGRANPAILNHVMVDYYGAPTPLNQLATITAPEAR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
+++ P+DKSS+ +EKAI +DLG+ P++DG ++R+ +P LT ERRKEL KVV K AEE
Sbjct: 64 LIVVTPFDKSSIGEVEKAIQKADLGLAPSSDGNIVRIVIPALTEERRKELVKVVGKFAEE 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
KV VRNIRRDA +K +K+ +++ED ++ +++Q TD+++K+IDS+ ++KE E++
Sbjct: 124 SKVQVRNIRRDANDQLKKNEKDGEITEDELRHYQNEVQAETDKFIKQIDSLVEEKEAEIM 183
Query: 275 KV 276
+V
Sbjct: 184 EV 185
>gi|223994729|ref|XP_002287048.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220978363|gb|EED96689.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 179
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 115/175 (65%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + RM++T+ + N ++RTGR+NP MLD++E +YYG+ L +A I+ P S L +
Sbjct: 2 DCEERMDKTMASLAENLATIRTGRANPNMLDRVECDYYGATTPLSQMATISVPSSQQLQV 61
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
P+DKS L IEKAI+ S LG TPNNDG VIR+ +PQLT ERRKEL K EE KVA
Sbjct: 62 SPFDKSVLNDIEKAIIYSGLGFTPNNDGSVIRINIPQLTEERRKELLKQCKSIGEEAKVA 121
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+RNIRRD + +K++K L +D D +QK TDE++K ID +KEKE+
Sbjct: 122 IRNIRRDGVDNIKKMEKNGDLGKDQALDGQDAIQKSTDEHVKMIDETVAKKEKEV 176
>gi|282882018|ref|ZP_06290659.1| ribosome recycling factor [Peptoniphilus lacrimalis 315-B]
gi|300813724|ref|ZP_07094044.1| ribosome recycling factor [Peptoniphilus sp. oral taxon 836 str.
F0141]
gi|281298048|gb|EFA90503.1| ribosome recycling factor [Peptoniphilus lacrimalis 315-B]
gi|300512181|gb|EFK39361.1| ribosome recycling factor [Peptoniphilus sp. oral taxon 836 str.
F0141]
Length = 185
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 82/170 (48%), Positives = 125/170 (73%)
Query: 107 TIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSL 166
TI ++ +F S+R GR+N ++LDKI V+YYG + +A ++ P+ L+I P+D +
Sbjct: 16 TISSLKEDFQSIRAGRANTSLLDKITVDYYGQQSPINQVAGLSAPEPRMLMISPWDPKLI 75
Query: 167 KSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDA 226
IEK+I+ SDLG+TP+NDG+VIRL +PQLT ERRK+L+KVV K +E K+A+RNIRRDA
Sbjct: 76 PEIEKSILKSDLGITPSNDGKVIRLIIPQLTEERRKDLTKVVGKNSEAAKIAIRNIRRDA 135
Query: 227 LKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+ +K +K K+++ED+ K ++QKLTD+Y+++ID I K KE EL+++
Sbjct: 136 MDEIKKAEKSKEITEDDRKSNEEEIQKLTDKYIEEIDKITKAKEIELMEI 185
>gi|375111088|ref|ZP_09757299.1| ribosome recycling factor [Alishewanella jeotgali KCTC 22429]
gi|397169749|ref|ZP_10493179.1| ribosome recycling factor [Alishewanella aestuarii B11]
gi|374568630|gb|EHR39802.1| ribosome recycling factor [Alishewanella jeotgali KCTC 22429]
gi|396088644|gb|EJI86224.1| ribosome recycling factor [Alishewanella aestuarii B11]
Length = 185
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 82/178 (46%), Positives = 132/178 (74%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D K RM+++++ +++ VRTGR++P++LD I+V YYG+ L+ +A ++ DS +L I
Sbjct: 8 DAKVRMDKSVEALKSQLTKVRTGRAHPSLLDGIQVSYYGADTPLRQVANVSIEDSRTLAI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+DKS +++EKAI++S+LG+ P + G VIR+ LP LT ERRK+L K+V +AE G+VA
Sbjct: 68 TVFDKSLTQAVEKAIMASNLGLNPMSAGTVIRVPLPPLTEERRKDLVKLVRGEAEGGRVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRNIRRDA ++ L K+K++SED+ + + ++QKLTD ++KKID + +KE+EL++V
Sbjct: 128 VRNIRRDANADFKALLKDKEISEDDERKAADEIQKLTDIFVKKIDEVLAEKERELMEV 185
>gi|183597594|ref|ZP_02959087.1| hypothetical protein PROSTU_00876 [Providencia stuartii ATCC 25827]
gi|386744344|ref|YP_006217523.1| ribosome recycling factor [Providencia stuartii MRSN 2154]
gi|188023090|gb|EDU61130.1| ribosome recycling factor [Providencia stuartii ATCC 25827]
gi|384481037|gb|AFH94832.1| ribosome recycling factor [Providencia stuartii MRSN 2154]
Length = 185
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 86/180 (47%), Positives = 129/180 (71%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I+KD + RME++++ ++ + VRTGR++P++LD I V+YYG+ L+ +A + D+ +
Sbjct: 5 IKKDAQDRMEKSVEALKNQISKVRTGRASPSLLDGIMVDYYGAATPLRQLANVTVEDART 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L I +D+S +IEKAI++SDLG+ P++ G VIR+ LP LT ERRK+L KVV +AE+G
Sbjct: 65 LAISVFDRSMSPAIEKAIMASDLGLNPSSAGTVIRVPLPPLTEERRKDLIKVVRAEAEQG 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
+VAVRNIRRDA + L K+K++SED + D+QKLTD Y+KK+D QKE EL++
Sbjct: 125 RVAVRNIRRDANDKIKALLKDKEISEDEERRSQDDIQKLTDGYIKKVDEALAQKEAELME 184
>gi|340755392|ref|ZP_08692082.1| ribosome-recycling factor [Fusobacterium sp. D12]
gi|373114691|ref|ZP_09528901.1| ribosome-recycling factor [Fusobacterium necrophorum subsp.
funduliforme 1_1_36S]
gi|419840880|ref|ZP_14364266.1| ribosome recycling factor [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|421500232|ref|ZP_15947243.1| ribosome recycling factor [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
gi|313687219|gb|EFS24054.1| ribosome-recycling factor [Fusobacterium sp. D12]
gi|371651365|gb|EHO16798.1| ribosome-recycling factor [Fusobacterium necrophorum subsp.
funduliforme 1_1_36S]
gi|386906968|gb|EIJ71688.1| ribosome recycling factor [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|402268646|gb|EJU18012.1| ribosome recycling factor [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
Length = 189
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 81/181 (44%), Positives = 134/181 (74%), Gaps = 2/181 (1%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
++ +++M++T++ + F S+R GR++ AMLD I+VE YGS + L +A ++ P++ L+
Sbjct: 9 QECESKMKKTVEATKEKFTSIRAGRASVAMLDTIKVEQYGSEMPLNQVATVSAPEARLLV 68
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I P+DK+ + IEKAI++++LGM PNNDG V+RL +P+LT+ERRKE K+ K+AE GK+
Sbjct: 69 IDPWDKTMIPKIEKAILAANLGMNPNNDGRVVRLVMPELTAERRKEYVKLAKKEAENGKI 128
Query: 218 AVRNIRRDALKAYEKLQKEKK--LSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
AVRNIR+D A +K++K+K+ +SED +K +++Q LTD+ +K++D + +KEKE+
Sbjct: 129 AVRNIRKDMNTALKKIEKDKESGMSEDELKRFEAEVQTLTDKTIKELDELLAKKEKEITT 188
Query: 276 V 276
V
Sbjct: 189 V 189
>gi|258645593|ref|ZP_05733062.1| ribosome recycling factor [Dialister invisus DSM 15470]
gi|260402951|gb|EEW96498.1| ribosome recycling factor [Dialister invisus DSM 15470]
Length = 185
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 128/179 (71%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K + +M+++I +R F S+RTG+++P++LD++ V+YYGS + +A + P++ L+
Sbjct: 7 KHLSEKMDKSIQALRNEFTSIRTGQASPSLLDRVFVDYYGSKTPVTQVASVTVPEARMLV 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
+QP+DK LK IEKAI SDLG+ P NDG +IR+ +PQLT +RRK+L KVV K+AEE KV
Sbjct: 67 VQPWDKGILKDIEKAINMSDLGLVPMNDGNLIRMAIPQLTEQRRKDLVKVVNKKAEEAKV 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RNIRRD +K +K +S+D +KD+ +QKLTD+ +K ++++ +K KE+L V
Sbjct: 127 AIRNIRRDGNVFLKKEEKNSDISKDVIKDMEDKIQKLTDQKIKDLEAVTDKKVKEILSV 185
>gi|313891920|ref|ZP_07825521.1| ribosome recycling factor [Dialister microaerophilus UPII 345-E]
gi|329120951|ref|ZP_08249582.1| ribosome recycling factor [Dialister micraerophilus DSM 19965]
gi|313119563|gb|EFR42754.1| ribosome recycling factor [Dialister microaerophilus UPII 345-E]
gi|327471113|gb|EGF16567.1| ribosome recycling factor [Dialister micraerophilus DSM 19965]
Length = 185
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 132/178 (74%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+++ RM+++I ++T F+S+RTG+++P++LD+I V+YYG+ + + I+ P++ L++
Sbjct: 8 ELRERMDKSIQALKTEFSSIRTGQASPSLLDRIFVDYYGTQTPISQVGSISVPEARMLVV 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+DKS LK IEKAI+ SDLG+ P NDG +IR+ +PQLT ERRK+L K+ K+AEE KVA
Sbjct: 68 QPWDKSVLKEIEKAILQSDLGLVPMNDGNLIRMAIPQLTEERRKDLVKIANKKAEEAKVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRD +K +K+ +S+D + + ++Q LTD +K+ID++ ++K KE++ V
Sbjct: 128 IRNIRRDGNTFLKKEEKKGDISKDIISEAEDEVQDLTDIKIKEIDAVTEKKIKEIMSV 185
>gi|346308251|ref|ZP_08850372.1| ribosome-recycling factor [Dorea formicigenerans 4_6_53AFAA]
gi|345903548|gb|EGX73311.1| ribosome-recycling factor [Dorea formicigenerans 4_6_53AFAA]
Length = 183
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 125/174 (71%), Gaps = 1/174 (0%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++T+D + + ++R GR+NP +L++I V+YYG+P ++ +A ++ P+ + IQP++
Sbjct: 11 KMQKTMDSLDSEMGTIRAGRANPNVLNRIMVDYYGTPTPIQQVANVSVPEPRMIQIQPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS LK IEKAI+ SDLG+ P NDG +RL P+LT ERRKEL K V K+ E KVA+RNI
Sbjct: 71 KSMLKVIEKAIMVSDLGINPTNDGTAVRLIFPELTEERRKELVKDVKKKGEAAKVAIRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD A++KL K +SED +K+L +LQK+TD+Y+K+ID + K KE++ V
Sbjct: 131 RRDGNDAFKKL-KGSDVSEDEIKNLEDELQKMTDKYVKEIDRAVEVKSKEVMTV 183
>gi|449018882|dbj|BAM82284.1| chloroplast ribosome releasing factor RRF [Cyanidioschyzon merolae
strain 10D]
Length = 250
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 149/237 (62%), Gaps = 6/237 (2%)
Query: 45 SVSVRQWSSAAN----YSRLVKLSNKPIVVRQLAHKR-NGVVRCATIEEIEAEKSSIEKD 99
SV V Q SS A+ RL+ + +R+ R + +R +E ++ K I+ D
Sbjct: 15 SVRVAQASSPASGRWERPRLLGKGAPLVPLRRRPQARVHAALRLRCVEGTDSLKG-IQVD 73
Query: 100 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQ 159
+ +ME+TI +R N ++RT R++PA+L++I+V+YYG L +A I+TP S++L I+
Sbjct: 74 CEQKMEKTIVSLRNNLAAIRTSRASPALLNRIQVKYYGVDTPLLQLASISTPSSTALQIE 133
Query: 160 PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAV 219
PYDKS L IE+ I SDLG+TP+NDG VIRL +P LT ERRK+L K + AEE +VA+
Sbjct: 134 PYDKSCLGDIERTIAESDLGLTPSNDGNVIRLNVPPLTEERRKQLVKAAKEMAEESRVAL 193
Query: 220 RNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RNIRR + A +KL+K ++S+D D +L K+ + K+D I + KEK+++ V
Sbjct: 194 RNIRRTGVDAVKKLEKGSEISKDLSADAQDELTKMIKRFEAKVDEIMRAKEKDIMTV 250
>gi|374850386|dbj|BAL53376.1| ribosome recycling factor [uncultured candidate division OP1
bacterium]
gi|374856796|dbj|BAL59649.1| ribosome recycling factor [uncultured candidate division OP1
bacterium]
Length = 185
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 81/178 (45%), Positives = 129/178 (72%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
++KARM++T+ + +RTGR+NPAM++ ++V+YYG+ LK +A+I P+ ++I
Sbjct: 8 ELKARMDKTVQVFEHELVKLRTGRANPAMVEDVKVDYYGTHTPLKHLARIAAPEPDLIVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
P+DK+ +++IEKAI +++LG P DGE++R+ +P+LT ERRKELSKV+ +AEE K+A
Sbjct: 68 HPFDKTQVQAIEKAIQAANLGFNPTVDGELLRIKIPRLTEERRKELSKVIHDKAEEAKIA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRR+ + +K QK+ KLSED+ + +++K+T EY KID + KEK+LL V
Sbjct: 128 LRNIRREIKEQLDKEQKDGKLSEDDHDRIMKEIEKVTHEYTAKIDQTAQAKEKQLLSV 185
>gi|404482326|ref|ZP_11017553.1| ribosome-recycling factor [Clostridiales bacterium OBRC5-5]
gi|404344487|gb|EJZ70844.1| ribosome-recycling factor [Clostridiales bacterium OBRC5-5]
Length = 184
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 85/179 (47%), Positives = 126/179 (70%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K + +M ++ID++ + S+R GR+NP +LD+I+VEYYG+P ++ + I+ P+ +
Sbjct: 6 KKFEEKMTKSIDVLLEEYASIRAGRANPHVLDRIKVEYYGTPTPIQQVGNISVPEPRIIQ 65
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I P++KS LK IEKAI SDLG+ P NDG IRL P+LT ERRKEL K V K+ E KV
Sbjct: 66 IAPWEKSLLKEIEKAINMSDLGINPTNDGSCIRLIFPELTEERRKELVKDVKKKGEACKV 125
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
AVRNIRRDA+ A +KL+K + +ED++KD + +QK+TD+ ++++D + K KE+L V
Sbjct: 126 AVRNIRRDAIDAIKKLEKAGEYTEDDLKDGENKIQKITDKAIERVDKAIEDKSKEILTV 184
>gi|419778926|ref|ZP_14304807.1| ribosome recycling factor [Streptococcus oralis SK10]
gi|383186690|gb|EIC79155.1| ribosome recycling factor [Streptococcus oralis SK10]
Length = 185
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 86/183 (46%), Positives = 125/183 (68%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K RM ++ + F +R GR+N ++LD++ VEYYG L IA I P++
Sbjct: 3 NAIVEKAKERMTQSHQSLAREFGGIRAGRANASLLDRVYVEYYGVETPLNQIASITIPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K E
Sbjct: 63 RVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
KVA+RNIRRDA+ +K +K K+++ED +K L ++QK TD+ +K ID + KEKE+
Sbjct: 123 NAKVAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKNIQKATDDAVKHIDDMTANKEKEI 182
Query: 274 LKV 276
L+V
Sbjct: 183 LEV 185
>gi|340758503|ref|ZP_08695089.1| ribosome-recycling factor [Fusobacterium varium ATCC 27725]
gi|251836716|gb|EES65250.1| ribosome-recycling factor [Fusobacterium varium ATCC 27725]
Length = 188
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 127/176 (72%), Gaps = 2/176 (1%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M + I+ + F S+R GR++ +MLD + VE YGS + L + ++ P++ L+I P+D
Sbjct: 13 KMGKAIEATKHKFTSIRAGRASVSMLDSVRVEQYGSEMPLNQVGSVSAPEARLLVIDPWD 72
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS + IEKAI++++LG+TPNNDG+VIRL +P+LT+ERRKE K+ +AE GKVAVRNI
Sbjct: 73 KSLISKIEKAIMAANLGLTPNNDGKVIRLVMPELTAERRKEYVKMAKTEAENGKVAVRNI 132
Query: 223 RRDALKAYEKLQKEKK--LSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
R+D +KL K+K+ +SED VK L +++QK+TD ++K ID ++ +KEKE+ V
Sbjct: 133 RKDGNNDLKKLSKDKENPISEDEVKTLEAEIQKITDAHIKVIDDLFAKKEKEITTV 188
>gi|262276524|ref|ZP_06054333.1| ribosome recycling factor [Grimontia hollisae CIP 101886]
gi|262220332|gb|EEY71648.1| ribosome recycling factor [Grimontia hollisae CIP 101886]
Length = 185
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 86/181 (47%), Positives = 129/181 (71%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I D K RM+++++ ++ + +RTGR++PA+LD + V+YYG+ LK +A I D+ +
Sbjct: 5 INADAKERMQKSVEALKNTLSKIRTGRAHPALLDGLSVDYYGASTPLKQLASIVAEDART 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L I +DKS +++EKAI++SDLG+ P + G VIR+ LP LT ERR++L K+V +AE G
Sbjct: 65 LAITVFDKSITQAVEKAIMTSDLGLNPMSAGTVIRVPLPPLTEERRRDLVKIVRGEAEGG 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
+VAVRNIRRDA + L KEK++SED + D+QKLTD +K+ID+I + KEKEL++
Sbjct: 125 RVAVRNIRRDANSELKALLKEKEISEDEERRGQDDIQKLTDAAVKEIDTILEAKEKELME 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|256371432|ref|YP_003109256.1| ribosome recycling factor [Acidimicrobium ferrooxidans DSM 10331]
gi|256008016|gb|ACU53583.1| ribosome recycling factor [Acidimicrobium ferrooxidans DSM 10331]
Length = 190
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 84/189 (44%), Positives = 127/189 (67%), Gaps = 4/189 (2%)
Query: 88 EIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQ 147
+I+AE ++ E RM + + F +VRTGR+ A+LD I VEYYG V L+ +A
Sbjct: 6 DIDAELAAFED----RMAKAVRHTEEEFATVRTGRAQAALLDGIVVEYYGERVPLRQLAS 61
Query: 148 INTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKV 207
+ TPD SLLI PYD++++ ++E+AI SDLG+ P NDG VIR+ + LT ERR+EL KV
Sbjct: 62 VTTPDPHSLLIAPYDRNAMGAMERAIRDSDLGVNPTNDGSVIRIAIAPLTEERRRELVKV 121
Query: 208 VAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 267
V K+AEEG+VA+R +RR A + +E LQ++ L+ D++ D+ L +LT ++ ++D +
Sbjct: 122 VRKRAEEGRVAIRGVRRQAKQHFESLQRQGSLTTDDLADIERSLDRLTARFVGELDRALE 181
Query: 268 QKEKELLKV 276
KE +LL+V
Sbjct: 182 VKEHDLLEV 190
>gi|212704264|ref|ZP_03312392.1| hypothetical protein DESPIG_02319 [Desulfovibrio piger ATCC 29098]
gi|212672344|gb|EEB32827.1| ribosome recycling factor [Desulfovibrio piger ATCC 29098]
Length = 186
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 81/178 (45%), Positives = 123/178 (69%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + RME+ + + +F +RTGR+ A++D I+ +YYG+P + +A + PDS ++ I
Sbjct: 9 DTEDRMEKAMAALERDFQKLRTGRATTALVDGIKADYYGTPTPISQMASVAVPDSRTITI 68
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+DK + +EKAI+ SDLG+TP NDG +IR+ +P LT ERRKEL KV K E+ KVA
Sbjct: 69 QPWDKGGISVVEKAILKSDLGLTPVNDGRIIRINIPPLTEERRKELVKVARKYTEDAKVA 128
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRN+RRDA + +KL+KEK ++ED K +++QKLTD+++ D + KEKE++ +
Sbjct: 129 VRNVRRDANDSLKKLEKEKAITEDEQKKAEAEVQKLTDKFVADADKRSQAKEKEIMDI 186
>gi|347522335|ref|YP_004779906.1| ribosome recycling factor [Lactococcus garvieae ATCC 49156]
gi|385833719|ref|YP_005871494.1| ribosome recycling factor [Lactococcus garvieae Lg2]
gi|420143253|ref|ZP_14650754.1| Ribosome-recycling factor (RRF) (Ribosome-releasing factor)
[Lactococcus garvieae IPLA 31405]
gi|343180903|dbj|BAK59242.1| ribosome recycling factor [Lactococcus garvieae ATCC 49156]
gi|343182872|dbj|BAK61210.1| ribosome recycling factor [Lactococcus garvieae Lg2]
gi|391856772|gb|EIT67308.1| Ribosome-recycling factor (RRF) (Ribosome-releasing factor)
[Lactococcus garvieae IPLA 31405]
Length = 185
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 124/178 (69%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ K RM +++ ++ + +R GR+N ++LD+I V+YYG+P L +A I P++ L+I
Sbjct: 8 NAKERMNSSLNSLQRDLGHIRAGRANASLLDRISVDYYGAPTPLNQMASITIPEARVLMI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
P+DK+ LK IE A+ +SD+G+TP NDG VIRL +P LT ERRKEL K + K E KVA
Sbjct: 68 TPFDKTILKDIEHALNASDIGITPANDGSVIRLVIPMLTEERRKELVKEMGKYIEGAKVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ +K +K K+++ED++K L D+Q +TD +K+ D + +KEKELL V
Sbjct: 128 IRNIRRDAIDTAKKQEKAKEITEDDLKVLEKDIQTITDNAVKEADKMAAEKEKELLDV 185
>gi|167854950|ref|ZP_02477725.1| ribosome releasing factor [Haemophilus parasuis 29755]
gi|219870409|ref|YP_002474784.1| ribosome recycling factor [Haemophilus parasuis SH0165]
gi|254809514|sp|B8F3D4.1|RRF_HAEPS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|167853907|gb|EDS25146.1| ribosome releasing factor [Haemophilus parasuis 29755]
gi|219690613|gb|ACL31836.1| ribosome recycling factor [Haemophilus parasuis SH0165]
Length = 185
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 80/181 (44%), Positives = 132/181 (72%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I+KD + RME++++ ++ + + +RTGR+ P++LD I+VEYYGS L+ +A + D+
Sbjct: 3 NEIKKDTQERMEKSLEALKGHISKIRTGRAQPSLLDAIQVEYYGSATPLRQLANVVAEDA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L + +D+S + ++EKAI++SDLG+ P++ G IR+ LP LT ERR++L K+V + E
Sbjct: 63 RTLAVTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+GKV++RNIRRDA + L+KEK++SE++ + D+QK+TD Y+KK+D I KEKEL
Sbjct: 123 QGKVSIRNIRRDANDKIKTLEKEKQISENDERKAQDDIQKITDIYIKKVDEILADKEKEL 182
Query: 274 L 274
+
Sbjct: 183 M 183
>gi|410866734|ref|YP_006981345.1| Ribosome-recycling factor [Propionibacterium acidipropionici ATCC
4875]
gi|410823375|gb|AFV89990.1| Ribosome-recycling factor [Propionibacterium acidipropionici ATCC
4875]
Length = 185
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 81/183 (44%), Positives = 127/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I KD +ME + R +F ++RTGR+NPAM +KI V+YYG+ L+ +A P++
Sbjct: 3 ADIIKDAGKKMESAVSHAREDFAAIRTGRANPAMFNKIMVDYYGAMTPLQQLASFQVPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
++LI PYDK S+ ++EKA+ SDLG+ P+ DG V+R LP LT ERRKE +K+ +AE
Sbjct: 63 RTVLISPYDKGSVNAVEKAVRDSDLGVNPSTDGNVVRCVLPSLTEERRKEYTKMAKAKAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
EG++AVRN+RR A +K +K+K++SED + L +L ++T +++++ID + K KE EL
Sbjct: 123 EGRIAVRNVRRSANDDLKKQEKDKEISEDQLTRLEKELDQVTKKHVEEIDELLKAKEAEL 182
Query: 274 LKV 276
++V
Sbjct: 183 MEV 185
>gi|127513560|ref|YP_001094757.1| ribosome recycling factor [Shewanella loihica PV-4]
gi|166231226|sp|A3QGA0.1|RRF_SHELP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|126638855|gb|ABO24498.1| ribosome recycling factor [Shewanella loihica PV-4]
Length = 185
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 82/183 (44%), Positives = 127/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I++D K+RM + ++ + VRTGR++P++LD I+V YYG+P LK + ++ DS
Sbjct: 3 NEIKEDAKSRMAKCVEATKNQMAKVRTGRAHPSLLDSIKVPYYGTPTPLKQVGNVSIEDS 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L I +D + + ++EKAI+SSDLG+ P + G IR+ LP LT ERRK+L KVV +AE
Sbjct: 63 RTLAITVFDTTMIAAVEKAIMSSDLGLNPMSAGTTIRIPLPALTEERRKDLIKVVRAEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
G++AVRN+RRDA + L+KEK+ +ED+V+ ++QK TD ++K+ID I KE EL
Sbjct: 123 NGRIAVRNVRRDANSDVKALEKEKECTEDDVRRTEDEIQKFTDAHIKQIDEILTAKEAEL 182
Query: 274 LKV 276
++V
Sbjct: 183 MEV 185
>gi|440503068|gb|AGC09632.1| putative ribosome recycling factor [uncultured bacterium]
gi|440503146|gb|AGC09680.1| putative ribosome recycling factor [uncultured bacterium]
Length = 185
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 126/178 (70%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + RM + ID ++ + S+RTGR++P++++++ VEYYGS L +A I+ P+ L+I
Sbjct: 8 DAETRMGKAIDALKRDLGSIRTGRASPSLVERLPVEYYGSSTPLNQLAGISVPEPRLLVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D+ S+ +IEKAI+ S+LG+ P+NDG+VIR+ +P LT ERRK+L K+V EEGKVA
Sbjct: 68 QPWDRGSMAAIEKAIMKSELGLNPSNDGQVIRIAIPSLTEERRKQLVKLVHGHVEEGKVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ ++L EK + ED+ + + +LT Y+ K D + K KE+E+++V
Sbjct: 128 LRNIRRDAMTNVKELMSEKLIGEDDERRAEQQVDELTRRYVGKADDVGKAKEQEVMEV 185
>gi|363420027|ref|ZP_09308123.1| ribosome recycling factor [Rhodococcus pyridinivorans AK37]
gi|359736319|gb|EHK85265.1| ribosome recycling factor [Rhodococcus pyridinivorans AK37]
Length = 185
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 120/174 (68%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+ME+ + + R + +RTGR+NP M ++I V+YYG+P + IA IN P++ ++++PY+
Sbjct: 12 KMEKAVTVARDDLGGIRTGRANPGMFNRIVVDYYGAPTPITQIASINVPEARMVIVKPYE 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
S L +IE AI +SDLG+ P NDG +IR+++PQLT ERR+EL K + E+ KVAVRN+
Sbjct: 72 ASQLNAIETAIRNSDLGVNPTNDGNIIRISVPQLTEERRRELVKQAKAKGEDAKVAVRNV 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RR A++ ++QKE + ED+V +L K T +Y+ +ID + K KE EL++V
Sbjct: 132 RRKAMEELGRIQKEGEAGEDDVNRAEKELDKTTAKYVGQIDELIKHKEAELMEV 185
>gi|257055044|ref|YP_003132876.1| ribosome recycling factor [Saccharomonospora viridis DSM 43017]
gi|256584916|gb|ACU96049.1| ribosome recycling factor [Saccharomonospora viridis DSM 43017]
Length = 185
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 79/178 (44%), Positives = 117/178 (65%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + +ME+ + + SVRTGR+ PAM +I VEYYG+P L +A +N P++ +I
Sbjct: 8 DAEEKMEKAVSFAKEELASVRTGRATPAMFSRIVVEYYGAPTPLNQLASVNIPEARMAII 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+PYD S L +IEKAI SDLG+ P NDG +IR+ +PQLT ERRKE+ K+ + EE +++
Sbjct: 68 KPYDGSQLANIEKAIRESDLGVNPTNDGSIIRVVIPQLTEERRKEMVKIAKGKGEEARIS 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+R IRR A + +++ K+ + ED V +LQ LTD Y+ ++D + K KE ELL+V
Sbjct: 128 IRGIRRKAKEELDRIAKDGEAGEDEVARAEKELQNLTDRYVHQVDELVKNKEAELLEV 185
>gi|373458468|ref|ZP_09550235.1| Ribosome-recycling factor [Caldithrix abyssi DSM 13497]
gi|371720132|gb|EHO41903.1| Ribosome-recycling factor [Caldithrix abyssi DSM 13497]
Length = 186
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 84/182 (46%), Positives = 124/182 (68%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
I KD K RM ++ +R +RTGR+ P +LD I+VEYYG V L +A + P+
Sbjct: 5 EIIKDAKRRMNGALNALRDELVKIRTGRATPNLLDGIKVEYYGQKVPLNQVATVTAPEPR 64
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
++IQP++K + IE+ I+ +DLG PNNDG VIR+ +P L+ ERRK+L K+V K AE+
Sbjct: 65 LIVIQPWEKKMVAEIEREILKADLGFNPNNDGTVIRIPIPPLSEERRKDLVKLVHKFAED 124
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
++AVRN+RRDA +KL+K+ ++SED + D+Q LTD+++KKID + K+KE E+L
Sbjct: 125 ARIAVRNVRRDANDQLKKLEKDHQISEDELSVYLDDVQDLTDDHIKKIDEMMKEKEAEIL 184
Query: 275 KV 276
KV
Sbjct: 185 KV 186
>gi|237743351|ref|ZP_04573832.1| ribosome Recycling Factor [Fusobacterium sp. 7_1]
gi|260495029|ref|ZP_05815158.1| ribosome recycling factor [Fusobacterium sp. 3_1_33]
gi|289766390|ref|ZP_06525768.1| ribosome Recycling Factor [Fusobacterium sp. D11]
gi|336401551|ref|ZP_08582313.1| ribosome-recycling factor [Fusobacterium sp. 21_1A]
gi|423137517|ref|ZP_17125160.1| ribosome-recycling factor [Fusobacterium nucleatum subsp. animalis
F0419]
gi|229433130|gb|EEO43342.1| ribosome Recycling Factor [Fusobacterium sp. 7_1]
gi|260197472|gb|EEW94990.1| ribosome recycling factor [Fusobacterium sp. 3_1_33]
gi|289717945|gb|EFD81957.1| ribosome Recycling Factor [Fusobacterium sp. D11]
gi|336160652|gb|EGN63684.1| ribosome-recycling factor [Fusobacterium sp. 21_1A]
gi|371959899|gb|EHO77570.1| ribosome-recycling factor [Fusobacterium nucleatum subsp. animalis
F0419]
Length = 190
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 86/180 (47%), Positives = 131/180 (72%), Gaps = 2/180 (1%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I K+ + +M +TI+ V+ F ++R GR+N +MLD ++V+ YGS V L I ++ P++
Sbjct: 8 IVKECEEKMLKTIEAVKEKFTAIRAGRANVSMLDGVKVDNYGSEVPLNQIGTVSAPEARL 67
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L+I P+DKS + IEKA+++++LGMTPNNDG VIRL LP+LT+ERRKE K+ +AE G
Sbjct: 68 LVIDPWDKSLISKIEKALLAANLGMTPNNDGRVIRLVLPELTAERRKEYVKLAKNEAENG 127
Query: 216 KVAVRNIRRDALKAYEKLQKEKK--LSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
K+AVRNIR+D +KL+K+K+ +SED +K + +Q LTD+Y+K+ID + +KEKE+
Sbjct: 128 KIAVRNIRKDINNRLKKLEKDKENPISEDELKKEETRVQTLTDKYVKEIDELLAKKEKEI 187
>gi|407477539|ref|YP_006791416.1| ribosome-recycling factor [Exiguobacterium antarcticum B7]
gi|407061618|gb|AFS70808.1| Ribosome-recycling factor [Exiguobacterium antarcticum B7]
Length = 185
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 84/182 (46%), Positives = 128/182 (70%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
+I K + RME+ ++ ++R GR+N A+LD ++VEYYGSP L +A +NTP++
Sbjct: 4 AIMKQAEERMEKAHLSLKKELATLRAGRANVAILDPVQVEYYGSPTPLNQVANVNTPEAR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
+LI P+DKS + IEKAI +DLG+ P++DG VIRL +P LT +RRKEL K+V K EE
Sbjct: 64 LILITPWDKSMVTEIEKAIQRADLGLAPSSDGTVIRLAIPPLTEDRRKELVKLVKKYTEE 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
GKVA+RNIRRD + +K +K+ L+ED+++ + D+Q LTD+++K +D KE+E++
Sbjct: 124 GKVALRNIRRDTNEQLKKQEKDGALTEDDLRGYTEDVQTLTDKFVKLLDQTATDKEQEIM 183
Query: 275 KV 276
+V
Sbjct: 184 EV 185
>gi|292670556|ref|ZP_06603982.1| ribosome recycling factor [Selenomonas noxia ATCC 43541]
gi|292647722|gb|EFF65694.1| ribosome recycling factor [Selenomonas noxia ATCC 43541]
Length = 185
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 125/173 (72%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M + ID++R F+S+R GR+ P +LDK+ V YYG+P S+ +A++ P+ ++I P++K
Sbjct: 13 MNKAIDVLRREFSSLRAGRATPNLLDKVMVPYYGTPTSVNQLAKVTVPEPHMIVITPWEK 72
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
L IE AI SDLG++PN+DG VIRL +PQ T ERRKEL K V K+ EE KVA+RNIR
Sbjct: 73 EILHDIEIAISKSDLGLSPNSDGTVIRLAVPQPTQERRKELIKTVGKKTEEAKVALRNIR 132
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RDA +A +KL+K+K+++ED K +QKL D+++K+++ + KEKE++++
Sbjct: 133 RDANEAIKKLEKDKEINEDESKRGQDSVQKLVDKFVKQMEEMRASKEKEVMEI 185
>gi|289423559|ref|ZP_06425360.1| ribosome recycling factor [Peptostreptococcus anaerobius 653-L]
gi|429728253|ref|ZP_19262985.1| ribosome recycling factor [Peptostreptococcus anaerobius VPI 4330]
gi|289156061|gb|EFD04725.1| ribosome recycling factor [Peptostreptococcus anaerobius 653-L]
gi|429150244|gb|EKX93183.1| ribosome recycling factor [Peptostreptococcus anaerobius VPI 4330]
Length = 185
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 82/178 (46%), Positives = 127/178 (71%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+++ +ME+TI+ ++ F ++R GR+N +MLDK+ V+YYG+P + +A + + L I
Sbjct: 8 ELEEQMEKTIEALKFEFGTIRAGRANASMLDKVRVDYYGTPTPVNQMAAVAVSEGRVLTI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
P+DKS + +IEKAI SD+G+ P+NDG VIRLT+PQLT ERRKEL+K K +E KV
Sbjct: 68 TPWDKSVIHAIEKAISDSDIGIAPSNDGSVIRLTVPQLTEERRKELAKKANKASESFKVR 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RN RRDA +K++K +L+ED+ K + ++QK+TD+Y+K ID + +KEK++L V
Sbjct: 128 IRNERRDANDKIKKMEKAAELTEDDAKKATDEVQKMTDKYIKVIDQLTDEKEKDILSV 185
>gi|366053241|ref|ZP_09450963.1| ribosome recycling factor [Lactobacillus suebicus KCTC 3549]
Length = 187
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 123/177 (69%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ K +ME++ D ++ ++R GR+N ++L+++ V+YYG+ + +A I+ P++ LLI
Sbjct: 10 EAKNKMEKSADSLQRELGNIRAGRANASILNRVSVDYYGAQTPINQVASISIPEARMLLI 69
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
PYDK+ L+SIE+AI +SDLG+TP NDG IRL++PQLT +RRKEL K V Q E+ KVA
Sbjct: 70 TPYDKTQLESIEQAIFASDLGLTPANDGSAIRLSIPQLTEDRRKELVKDVKAQTEQAKVA 129
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
VRNIRRDA+ A +K K ++D DL +QKLTD +K ++ + K+KELL+
Sbjct: 130 VRNIRRDAMDALKKGNKAGDFNDDEFHDLEDQVQKLTDGGIKNLEQVEADKDKELLQ 186
>gi|258511403|ref|YP_003184837.1| ribosome recycling factor [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257478129|gb|ACV58448.1| ribosome recycling factor [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 187
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 84/179 (46%), Positives = 126/179 (70%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
++++ RM++ I +R F +VR GR+ P+MLD + VEYYG+ + + +A + +P+ L+
Sbjct: 9 QNLQERMDKAIQNLRREFATVRAGRAAPSMLDHVMVEYYGAQMPVNQVASVTSPEPRLLV 68
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I P+DKS L IEKAI SDLG+ P NDG VIRLT+P LT +RR+EL K V K AEE +V
Sbjct: 69 ISPWDKSMLSEIEKAIQKSDLGLNPANDGNVIRLTIPALTEQRRQELVKQVRKMAEEARV 128
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RNIRRD + +KL+K LSED+V+ L +Q+LTD+ + ++D + + KEK++ +V
Sbjct: 129 AIRNIRRDGNEEIKKLEKAGDLSEDDVRRLMDRVQQLTDKAIAQVDRLLEDKEKDVTQV 187
>gi|385678485|ref|ZP_10052413.1| ribosome recycling factor [Amycolatopsis sp. ATCC 39116]
Length = 185
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 122/178 (68%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + +ME+ + + + +SVRTGR+NP M +I VE YGS + L +A +N P++ +++
Sbjct: 8 DAEEKMEKAVSFAKEDLSSVRTGRANPGMFARIMVEAYGSTMPLNQVAGVNIPEARMVIV 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+PYD+ L +IEKAI SDLG+ P+NDG++IR+T+PQLT ERRKE+ K+V + E+ KV
Sbjct: 68 KPYDQGQLGAIEKAIRESDLGVNPSNDGQIIRITIPQLTEERRKEMVKMVKAKGEDAKVH 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+R +RR + + +++ K+ + ED V +LQ LTD Y+ K+D + K KE ELL+V
Sbjct: 128 IRGVRRKSKEELDRIAKDGEAGEDEVARAEKELQHLTDNYVAKVDELVKHKEAELLEV 185
>gi|24373200|ref|NP_717243.1| ribosome recycling factor Frr [Shewanella oneidensis MR-1]
gi|34924965|sp|Q8EGH2.1|RRF_SHEON RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|24347421|gb|AAN54687.1| ribosome recycling factor Frr [Shewanella oneidensis MR-1]
Length = 185
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 79/183 (43%), Positives = 127/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I+KD + RM + +D + VRTGR++P++LD I+V YYG+ L +A + D+
Sbjct: 3 ADIKKDAQERMGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGVEDA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L + +D+S+++++EKAI+SSDLG+ P + G +R+ LP LT ERRK+ KVV +AE
Sbjct: 63 RTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRAEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
G+VA+RN+RRDA+ +KL+K K+ +ED+V+ ++QK TD ++KK+D I KE EL
Sbjct: 123 GGRVAIRNVRRDAISDVKKLEKAKECTEDDVRRFEDEVQKFTDAHIKKVDEILAAKEIEL 182
Query: 274 LKV 276
++V
Sbjct: 183 MEV 185
>gi|302342180|ref|YP_003806709.1| ribosome recycling factor [Desulfarculus baarsii DSM 2075]
gi|301638793|gb|ADK84115.1| ribosome recycling factor [Desulfarculus baarsii DSM 2075]
Length = 185
Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 126/178 (70%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ K RM + I+ ++ +F+ VRTGR+ P +LD + +YYG P L +A I+ P++ ++I
Sbjct: 8 EAKERMHKAIEALKRDFSRVRTGRATPTILDGVRADYYGQPTPLNQMAGISVPEARLIVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D S + IEKAI++SDLG+TP +DG+V+R+ P LT ERRK+L+K+V K AEE KVA
Sbjct: 68 QPWDPKSCELIEKAILASDLGLTPQSDGKVVRINFPPLTQERRKDLAKLVRKMAEEAKVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VR RRDA + ++ +KE ++SED+ ++QK TD+++KK+D +KEKE+++
Sbjct: 128 VRAARRDANEMLKEFKKEGEISEDDAFRGQEEIQKTTDDFIKKVDETLAEKEKEIMEF 185
>gi|167037634|ref|YP_001665212.1| ribosome recycling factor [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|167040295|ref|YP_001663280.1| ribosome recycling factor [Thermoanaerobacter sp. X514]
gi|256750775|ref|ZP_05491660.1| ribosome recycling factor [Thermoanaerobacter ethanolicus CCSD1]
gi|300914379|ref|ZP_07131695.1| ribosome recycling factor [Thermoanaerobacter sp. X561]
gi|307724385|ref|YP_003904136.1| ribosome recycling factor [Thermoanaerobacter sp. X513]
gi|320116049|ref|YP_004186208.1| ribosome recycling factor [Thermoanaerobacter brockii subsp. finnii
Ako-1]
gi|238687580|sp|B0K1P6.1|RRF_THEPX RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|238687714|sp|B0K9R3.1|RRF_THEP3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|166854535|gb|ABY92944.1| ribosome recycling factor [Thermoanaerobacter sp. X514]
gi|166856468|gb|ABY94876.1| ribosome recycling factor [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|256750358|gb|EEU63377.1| ribosome recycling factor [Thermoanaerobacter ethanolicus CCSD1]
gi|300889314|gb|EFK84460.1| ribosome recycling factor [Thermoanaerobacter sp. X561]
gi|307581446|gb|ADN54845.1| ribosome recycling factor [Thermoanaerobacter sp. X513]
gi|319929140|gb|ADV79825.1| ribosome recycling factor [Thermoanaerobacter brockii subsp. finnii
Ako-1]
Length = 184
Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 128/174 (73%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++++ +++ ++R GR+NPA+LD+I V+YYG+P L +A I P+ L++QP+D
Sbjct: 11 KMQKSLSVLKNELAAIRAGRANPALLDRIMVDYYGTPTPLNRLATITAPEPRVLVVQPWD 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
S + IEKAI SDLG+ P +DG+V+RL P+LT ERRKEL K+V K+AEE KVAVR I
Sbjct: 71 VSKISDIEKAIQKSDLGINPVSDGKVLRLVFPELTEERRKELVKLVHKKAEEAKVAVRQI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA A +K++K ++SED K ++QKLTD+Y+K+ID + + KEKE++++
Sbjct: 131 RRDANDAVKKMEKNGEISEDERKKREEEIQKLTDKYIKEIDKVVEAKEKEIMEI 184
>gi|300088119|ref|YP_003758641.1| ribosome recycling factor [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299527852|gb|ADJ26320.1| ribosome recycling factor [Dehalogenimonas lykanthroporepellens
BL-DC-9]
Length = 186
Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 130/172 (75%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +I+++ ++RTGR++ A+++ ++V+Y G+P + +A ++ P++ LLIQP+D
Sbjct: 13 KMGISIEVLHRELGAIRTGRASTAIIEHVQVDYAGTPTPIHHLANVSVPNARMLLIQPWD 72
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
++ + IEKAI+ SDLG+TP+NDG+VIRL++P L+ ERR EL+++VAK+ E+ KVA+RN+
Sbjct: 73 RTMMGPIEKAIMKSDLGLTPSNDGQVIRLSIPPLSQERRLELTRMVAKRVEDDKVAIRNL 132
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
RR+AL +K++K+K+LS+D + LQKLTD Y+ K D + KQK++ELL
Sbjct: 133 RREALDHLKKMEKDKELSQDESRRAQDALQKLTDSYIAKADELGKQKDEELL 184
>gi|330718876|ref|ZP_08313476.1| ribosome recycling factor [Leuconostoc fallax KCTC 3537]
Length = 181
Score = 173 bits (438), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 123/178 (69%), Gaps = 3/178 (1%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D KARM++ D ++ +R GR+NPA+L+++EVEYYG+ L +A I P++ LL+
Sbjct: 7 DAKARMQKAQDALQRELAGIRAGRANPALLNRVEVEYYGAMTPLNQVASIQVPEARILLV 66
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
P+DK++L +I AI SDLG+ P +DG IRL +PQLT ERRKELSK V + E+ KVA
Sbjct: 67 TPFDKTALDAIVHAINVSDLGLNPASDGNAIRLVIPQLTEERRKELSKDVKAEGEKAKVA 126
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRD + + ++K+ L+ED++ ++ QKLTDE +K ID I +KE+ELL +
Sbjct: 127 IRNIRRDVM---DSIKKDDALNEDDMHKAETEAQKLTDENVKAIDKIAAEKEEELLTI 181
>gi|398337499|ref|ZP_10522204.1| ribosome recycling factor [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
Length = 184
Score = 173 bits (438), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 129/178 (72%), Gaps = 4/178 (2%)
Query: 100 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQ 159
+K +M++TID+V+ +F +VRTGR+NP++++ I V+YYG+ + + I+ P+ L+I
Sbjct: 10 MKTKMDKTIDLVKKDFGTVRTGRANPSLVEDIRVDYYGTLTPINQLGNISVPEPRILVIS 69
Query: 160 PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAV 219
PYDK +K IEKAI S LG+ P+NDG VIR+ +P+LT ERRKEL+KVV ++EE KVA+
Sbjct: 70 PYDKGIMKDIEKAIQVSGLGLQPSNDGVVIRIIIPELTGERRKELAKVVKSKSEEKKVAI 129
Query: 220 RNIRRDALKAYEKLQKE-KKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RNIRRDA+ E L+K + +S+D ++ + +QK+TD Y+ KI ++ +KEKE+ +
Sbjct: 130 RNIRRDAM---EDLKKHTEGMSKDEIQTVQDQIQKITDSYVDKISALTAEKEKEITTI 184
>gi|444432099|ref|ZP_21227258.1| ribosome-recycling factor [Gordonia soli NBRC 108243]
gi|443886928|dbj|GAC68979.1| ribosome-recycling factor [Gordonia soli NBRC 108243]
Length = 185
Score = 173 bits (438), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 79/178 (44%), Positives = 121/178 (67%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + +ME+ + + R + S+RTGR+NPAM +K+ +EYYG+ + +A INTP++ ++I
Sbjct: 8 DAEEKMEKAVGVARDDMGSIRTGRANPAMFNKVHIEYYGALTPITQVASINTPEARLVVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+PY+ SSL+ IE AI +SDLG+ P NDG +IR+ +PQLT +RRKEL K + E+ KV+
Sbjct: 68 KPYEASSLRDIETAIRNSDLGVNPTNDGTIIRVAIPQLTEDRRKELVKQAKSKGEDAKVS 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RN+RR A +++QK+ + ED V DL K T Y+ ++D + K KE ELL+V
Sbjct: 128 IRNVRRKAADELKRIQKDGEAGEDEVSRAEKDLDKTTATYVAQVDELVKHKENELLEV 185
>gi|328948074|ref|YP_004365411.1| ribosome-recycling factor [Treponema succinifaciens DSM 2489]
gi|328448398|gb|AEB14114.1| Ribosome-recycling factor [Treponema succinifaciens DSM 2489]
Length = 179
Score = 173 bits (438), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 128/177 (72%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D ++RME+T++ ++ + S+RTGR++ A+ DK+ V+YYG+P L + I+ P++ +++I
Sbjct: 3 DNESRMEKTVNSLKEEYKSIRTGRASAAIFDKVRVDYYGTPTPLNQVGNISIPEARTIVI 62
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
P+DKS + IEKAI ++LG+ PNNDG+VIR+ +P LT++RRKEL K AE +
Sbjct: 63 SPFDKSIMGDIEKAIQKAELGLNPNNDGKVIRIAIPPLTADRRKELVKQAKATAENYRTT 122
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
+RNIRRD + +K QK +L+ED +K + LQKLTD+Y+++I+ IY+ KEKE+++
Sbjct: 123 IRNIRRDGNEDLKKQQKAGELTEDQLKTETEKLQKLTDKYIEEINGIYEAKEKEIME 179
>gi|384135103|ref|YP_005517817.1| ribosome recycling factor [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339289188|gb|AEJ43298.1| ribosome recycling factor [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
Length = 185
Score = 173 bits (438), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 84/179 (46%), Positives = 126/179 (70%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
++++ RM++ I +R F +VR GR+ P+MLD + VEYYG+ + + +A + +P+ L+
Sbjct: 7 QNLQERMDKAIQNLRREFATVRAGRAAPSMLDHVMVEYYGAQMPVNQVASVTSPEPRLLV 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I P+DKS L IEKAI SDLG+ P NDG VIRLT+P LT +RR+EL K V K AEE +V
Sbjct: 67 ISPWDKSMLSEIEKAIQKSDLGLNPANDGNVIRLTIPALTEQRRQELVKQVRKMAEEARV 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RNIRRD + +KL+K LSED+V+ L +Q+LTD+ + ++D + + KEK++ +V
Sbjct: 127 AIRNIRRDGNEEIKKLEKAGDLSEDDVRRLMDRVQQLTDKAIAQVDRLLEDKEKDVTQV 185
>gi|289578399|ref|YP_003477026.1| ribosome recycling factor [Thermoanaerobacter italicus Ab9]
gi|297544675|ref|YP_003676977.1| ribosome recycling factor [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|289528112|gb|ADD02464.1| ribosome recycling factor [Thermoanaerobacter italicus Ab9]
gi|296842450|gb|ADH60966.1| ribosome recycling factor [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 184
Score = 173 bits (438), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 129/174 (74%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++++ ++++ ++R GR+NPA+LD+I V+YYG+P L +A I P++ L++QP+D
Sbjct: 11 KMQKSLSVLKSELAAIRAGRANPALLDRIMVDYYGTPTPLNRLATITAPEARVLVVQPWD 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
S + IEKAI SDLG+ P +DG+V+RL P+LT ERRKEL K+V K+AEE KVAVR I
Sbjct: 71 VSKISDIEKAIQKSDLGINPVSDGKVLRLVFPELTEERRKELVKLVYKKAEEAKVAVRQI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA +K++K ++SED K ++QKLTD+Y+K+ID I + KEKE++++
Sbjct: 131 RRDANDTVKKMEKNGEISEDERKKREEEIQKLTDKYIKEIDKIAETKEKEIMEI 184
>gi|344940509|ref|ZP_08779797.1| Ribosome-recycling factor [Methylobacter tundripaludum SV96]
gi|344261701|gb|EGW21972.1| Ribosome-recycling factor [Methylobacter tundripaludum SV96]
Length = 185
Score = 173 bits (438), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 83/181 (45%), Positives = 126/181 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S I++D RM ++I+ ++ F+ +RTGR++P++LD+I V YYG+ SL +A I D+
Sbjct: 3 SDIQQDASTRMSKSIEALKHEFSKIRTGRAHPSLLDQINVSYYGTESSLSQVANIAVEDA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L I P++K +++IEKAI+ SDLG+ P +G VIR+ LP LT ERR+ L KVV +AE
Sbjct: 63 RTLTITPWEKGMVQAIEKAIMKSDLGLNPATNGMVIRIPLPPLTEERRRSLVKVVKNEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
G+VA+RNIRRDA A ++ KEK +SED + +QKLTD+Y+K ++ + + KE +L
Sbjct: 123 NGRVAIRNIRRDANSAIKEALKEKMISEDEARAAEEKIQKLTDQYVKDVEKLLEAKEADL 182
Query: 274 L 274
L
Sbjct: 183 L 183
>gi|325923975|ref|ZP_08185564.1| ribosome recycling factor [Xanthomonas gardneri ATCC 19865]
gi|325545558|gb|EGD16823.1| ribosome recycling factor [Xanthomonas gardneri ATCC 19865]
Length = 185
Score = 173 bits (438), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 87/181 (48%), Positives = 125/181 (69%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I++D RM ++ID +R + +VRTGR++PA+LD I+V+ YG+ L +A I+ + S
Sbjct: 5 IKQDALTRMTKSIDALRHSLTTVRTGRASPALLDNIKVKAYGTDTPLNQVASISVSEGRS 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L+I +DK +K +EKAI +SDLG+TP G VIRL LP LT ERRKELSK V + E+
Sbjct: 65 LVISLFDKGMIKDVEKAIYASDLGLTPTVVGTVIRLNLPPLTEERRKELSKSVHGEGEDS 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVA+RNIRRDA + + L K+K ++ED + D+QKLTD+ +K +D + K KE+EL+
Sbjct: 125 KVAIRNIRRDANQQVKDLLKDKAVTEDEARSAEDDIQKLTDKAIKDVDEVVKGKEQELMT 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|406837424|ref|ZP_11097018.1| ribosome recycling factor [Lactobacillus vini DSM 20605]
Length = 187
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 79/179 (44%), Positives = 128/179 (71%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I ++ + +M++ ++ + +R GR+N ++L++I+V+YYG+P L +AQI P++
Sbjct: 7 IIQNAQEKMKKAEQALQRDLGGIRAGRANASLLNRIKVDYYGAPTPLNQLAQITIPEARV 66
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LL++P+DKS+LK IE+AI++SDLG++P NDG IRL +PQLT ERRKEL+K V +AE+G
Sbjct: 67 LLVKPFDKSALKEIERAILASDLGISPTNDGTAIRLVIPQLTEERRKELAKQVKAEAEKG 126
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
KVAVRNIRR+ + +K +K L+ED + + Q +T++ +K +++I KEKE+L
Sbjct: 127 KVAVRNIRREMMDGLKKAEKNGDLNEDELHNFEDQAQTVTNQAIKAVEAIQADKEKEIL 185
>gi|386393636|ref|ZP_10078417.1| ribosome recycling factor [Desulfovibrio sp. U5L]
gi|385734514|gb|EIG54712.1| ribosome recycling factor [Desulfovibrio sp. U5L]
Length = 184
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 126/174 (72%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM++ + ++ F +RTGR+ ++LD + V+YYG+ L+ IA ++TPDS ++ IQP+D
Sbjct: 11 RMKKALSVLDKEFARLRTGRATTSLLDGVRVDYYGTVTPLEQIASVSTPDSRTITIQPWD 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
+ + +E+AI+ SDLG+TP NDG++IR+++P LT +RRK+L+KV K AEE KVA+RN+
Sbjct: 71 RKAFNDVERAILKSDLGLTPVNDGKIIRISIPPLTEDRRKDLAKVAKKYAEEAKVAIRNV 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA +A +K + +K +SED+ D+QKLTD Y+ K D +KEKE++++
Sbjct: 131 RRDANEALKKKKNDKAISEDDQHKGQEDVQKLTDGYIAKTDEALAKKEKEIMEI 184
>gi|336419926|ref|ZP_08600176.1| ribosome recycling factor [Fusobacterium sp. 11_3_2]
gi|336162434|gb|EGN65400.1| ribosome recycling factor [Fusobacterium sp. 11_3_2]
Length = 190
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 85/178 (47%), Positives = 130/178 (73%), Gaps = 2/178 (1%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+ + +M +TI+ V+ F ++R GR+N +MLD ++V+ YGS V L I ++ P++ L+
Sbjct: 10 KECEEKMLKTIEAVKEKFTAIRAGRANVSMLDGVKVDNYGSEVPLNQIGTVSAPEARLLV 69
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I P+DKS + IEKA+++++LGMTPNNDG VIRL LP+LT+ERRKE K+ +AE GK+
Sbjct: 70 IDPWDKSLISKIEKALLAANLGMTPNNDGRVIRLVLPELTAERRKEYVKLAKNEAENGKI 129
Query: 218 AVRNIRRDALKAYEKLQKEKK--LSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
AVRNIR+D +KL+K+K+ +SED +K + +Q LTD+Y+K+ID + +KEKE+
Sbjct: 130 AVRNIRKDINNRLKKLEKDKENPISEDELKKEETRVQTLTDKYVKEIDELLAKKEKEI 187
>gi|260101372|ref|ZP_05751609.1| ribosome recycling factor [Lactobacillus helveticus DSM 20075]
gi|417008687|ref|ZP_11945684.1| ribosome recycling factor [Lactobacillus helveticus MTCC 5463]
gi|260084824|gb|EEW68944.1| ribosome recycling factor [Lactobacillus helveticus DSM 20075]
gi|328465732|gb|EGF36936.1| ribosome recycling factor [Lactobacillus helveticus MTCC 5463]
Length = 185
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 125/172 (72%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M+++I + + S+R G +N A+LD ++VEYYG+P L ++ I P+ LLI PYD+
Sbjct: 13 MDKSIKVYQKRLASIRAGVANAALLDNVQVEYYGAPTPLTQMSSITIPEPRVLLITPYDQ 72
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
+SL IE A+++S+LG+TP NDG+VIRL +PQLT ERR+E++K V K AE+ K+AVRN+R
Sbjct: 73 NSLDDIEHALLASNLGLTPANDGKVIRLVIPQLTGERREEIAKEVGKYAEDAKIAVRNVR 132
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
R+A+ A +K QK+ ++ED ++L +QK+TD+ KKID + +K KE+++
Sbjct: 133 REAMDALKKEQKDGNITEDEQRNLEKQVQKITDDSTKKIDQLADEKRKEIIQ 184
>gi|390934914|ref|YP_006392419.1| Ribosome-recycling factor [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389570415|gb|AFK86820.1| Ribosome-recycling factor [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
Length = 184
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 83/179 (46%), Positives = 126/179 (70%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+ + +M+++I +++ S+R GR+NPA+LD+I ++YYG+ + +A I P+ ++
Sbjct: 6 KNTEEKMKKSIAVLKNELMSIRAGRANPALLDRISIDYYGTMTPINKLATITAPEPKVII 65
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D S + IEKAI SDL + P +DG++IRL P LT ERRKEL K+V K+ EE KV
Sbjct: 66 IQPWDTSKISEIEKAIQKSDLNINPTSDGKIIRLVFPDLTEERRKELVKLVHKKGEEAKV 125
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
AVR IRRDA A +K+ K ++SED ++QKLTD+Y+K+ID I +QKEKE++++
Sbjct: 126 AVRQIRRDANDAIKKMDKNGEISEDEKLKSEENVQKLTDKYIKEIDKILEQKEKEIMEI 184
>gi|325971044|ref|YP_004247235.1| ribosome-recycling factor [Sphaerochaeta globus str. Buddy]
gi|324026282|gb|ADY13041.1| Ribosome-recycling factor [Sphaerochaeta globus str. Buddy]
Length = 184
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 79/176 (44%), Positives = 129/176 (73%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
+++M ++++ + +F +RTGR++ ++LDKI V+YYGS + +A ++ P++ ++IQP
Sbjct: 9 ESKMLKSLESLSKDFAGLRTGRASASLLDKIRVDYYGSETPINQVATVSVPEARMIVIQP 68
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
+DKS L +IEKAI+ SDLG+ PNNDG++IRL P L ERRK+L K AE+ +VA+R
Sbjct: 69 WDKSVLSAIEKAILKSDLGLPPNNDGKLIRLNFPPLNEERRKQLVKSAKNTAEQSRVAMR 128
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N+RR+A+ +KLQK +SED +KD S +QK+TD Y+ +I+S+ +KEKE++++
Sbjct: 129 NVRREAMDELKKLQKSGDISEDELKDAESKIQKMTDSYITQINSLSDEKEKEIMEI 184
>gi|157962701|ref|YP_001502735.1| ribosome recycling factor [Shewanella pealeana ATCC 700345]
gi|189044076|sp|A8H6L3.1|RRF_SHEPA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|157847701|gb|ABV88200.1| ribosome recycling factor [Shewanella pealeana ATCC 700345]
Length = 185
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 128/180 (71%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I+ D + RM++ ++ +T VRTGR++P++LD I+V YYGS LK +A ++ D+ +
Sbjct: 5 IKSDAQTRMDKCVESTKTQMAKVRTGRAHPSLLDTIQVPYYGSLTPLKQVASVSIGDART 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L + +D++ + ++EKAI+SSDLG+ P + G IR+ LP LT ERRK+L KVV +AE G
Sbjct: 65 LTVSVFDRTMIAAVEKAIMSSDLGLNPMSAGATIRIPLPALTEERRKDLIKVVRAEAENG 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
++A+RN+RRDA ++L+KEK+ +ED+V+ D+QKLTD ++K ID I KEKEL++
Sbjct: 125 RIAIRNVRRDANSNVKELEKEKECTEDDVRRSEDDVQKLTDAHIKLIDEILAAKEKELME 184
>gi|401565136|ref|ZP_10805990.1| ribosome recycling factor [Selenomonas sp. FOBRC6]
gi|400188123|gb|EJO22298.1| ribosome recycling factor [Selenomonas sp. FOBRC6]
Length = 185
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 125/173 (72%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M + I+ +R F+S+R GR+ P +LDK+ V YYG+P S+ +A++ P+ ++I P++K
Sbjct: 13 MNKAIEALRREFSSLRAGRATPNLLDKVMVPYYGTPTSVNQLAKVTVPEPHMIVITPWEK 72
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
S L IE AI SDLG++PN+DG VIRL +PQ T ERRKEL K V K+ EE KVA+RNIR
Sbjct: 73 SILHEIEIAISKSDLGLSPNSDGTVIRLAIPQPTQERRKELIKTVGKKTEEAKVALRNIR 132
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RDA +A +KL+K+K+++ED K +QKL D+++K+++ + KEKE++++
Sbjct: 133 RDANEAIKKLEKDKEINEDESKRGQDSVQKLVDKFVKQMEEMRAAKEKEVMEI 185
>gi|395238292|ref|ZP_10416229.1| Ribosome-recycling factor [Lactobacillus gigeriorum CRBIP 24.85]
gi|394477864|emb|CCI86206.1| Ribosome-recycling factor [Lactobacillus gigeriorum CRBIP 24.85]
Length = 192
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 123/173 (71%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K ME++I + + N S+R G +N +L+ + VEYYG P L ++ I P+ LL+ P
Sbjct: 16 KENMEKSIKVYQRNLASIRAGVANAGLLEGVRVEYYGVPTPLTQMSSITIPEPRVLLVTP 75
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YD +SL +IE AI++S+LG+TP NDG+VIRL +PQLT ERR+E++K V K+AEE K+++R
Sbjct: 76 YDVNSLDNIEHAILASNLGLTPANDGKVIRLVIPQLTGERRQEIAKQVGKEAEEAKISIR 135
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
NIRRDA+ + +K QK+ +++ED ++L +QK+TD+ KKID + K KE+
Sbjct: 136 NIRRDAMNSLKKQQKDDEITEDEQRNLEKQVQKVTDDATKKIDQLADTKRKEI 188
>gi|312871359|ref|ZP_07731455.1| ribosome recycling factor [Lactobacillus iners LEAF 3008A-a]
gi|312872418|ref|ZP_07732487.1| ribosome recycling factor [Lactobacillus iners LEAF 2062A-h1]
gi|312873341|ref|ZP_07733394.1| ribosome recycling factor [Lactobacillus iners LEAF 2052A-d]
gi|311091131|gb|EFQ49522.1| ribosome recycling factor [Lactobacillus iners LEAF 2052A-d]
gi|311092000|gb|EFQ50375.1| ribosome recycling factor [Lactobacillus iners LEAF 2062A-h1]
gi|311093111|gb|EFQ51459.1| ribosome recycling factor [Lactobacillus iners LEAF 3008A-a]
Length = 185
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 80/180 (44%), Positives = 125/180 (69%), Gaps = 1/180 (0%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
IEK KA M ++I + +R G +N ++LD I+VEYYG P L ++ I P++
Sbjct: 6 IEK-AKANMSKSISVFEKELGGIRAGVANASLLDGIKVEYYGVPTPLTQMSSITIPEARV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L+I P+DK++L +IE AI++SDLG+TP NDG V+R+ +PQLT ERR E++K V K AE+
Sbjct: 65 LMITPFDKTTLNNIEHAILASDLGITPANDGSVVRIVIPQLTGERRIEIAKKVGKLAEQA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
K+A+RNIRR+ + A +K QK+ +++ED++ D+QK+TD+ K +D++ +K KE+ K
Sbjct: 125 KIAIRNIRREGIDALKKQQKDGEITEDDLHKFEKDIQKITDDATKDVDALADKKSKEITK 184
>gi|336450597|ref|ZP_08621044.1| ribosome recycling factor [Idiomarina sp. A28L]
gi|336282420|gb|EGN75652.1| ribosome recycling factor [Idiomarina sp. A28L]
Length = 185
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 126/178 (70%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D K RM +++D + + +RTGR++P++LD + V YYGS LK +A I DS +L I
Sbjct: 8 DAKDRMSKSVDALAAQMSKIRTGRAHPSLLDGVMVPYYGSDTPLKQLANITIEDSRTLAI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+DKSS ++EKAI++SDLG+ P G VIR+ LP LT ERR++L K+V +AE+G+VA
Sbjct: 68 TVFDKSSSGAVEKAILTSDLGLNPAGAGNVIRVPLPPLTEERRRDLVKIVRAEAEQGRVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRNIRRDA ++L KEK+++ED+ + ++QKLTD+++KK+D + KE EL++V
Sbjct: 128 VRNIRRDANSDIKELLKEKEITEDDDRKAQDNIQKLTDDFVKKVDELLATKEAELMEV 185
>gi|451344141|ref|ZP_21913203.1| ribosome recycling factor [Eggerthia catenaformis OT 569 = DSM
20559]
gi|449337141|gb|EMD16307.1| ribosome recycling factor [Eggerthia catenaformis OT 569 = DSM
20559]
Length = 181
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 121/174 (69%), Gaps = 5/174 (2%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+ME+TI + ++RTGR+NP+MLD++ V+YYGSP L I+ I+ + LL++PYD
Sbjct: 13 KMEKTIKAYKNELVNIRTGRANPSMLDRVMVDYYGSPTPLNQISGISVVEGRQLLVKPYD 72
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KSS+K IE+A+ +DLG+TP NDG VIR+ +P LT ERRKEL K V K AEE K+A+RN
Sbjct: 73 KSSMKDIERAVYEADLGLTPQNDGAVIRINIPPLTEERRKELVKQVKKLAEEAKIAIRNQ 132
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RR A EK + ED VK+ D+QKLTD+++++ID I K KE +L+ V
Sbjct: 133 RRKANDLVEKGE-----DEDAVKEGKKDIQKLTDKFIQEIDDITKDKESDLMTV 181
>gi|241896312|ref|ZP_04783608.1| ribosome recycling factor [Weissella paramesenteroides ATCC 33313]
gi|241870473|gb|EER74224.1| ribosome recycling factor [Weissella paramesenteroides ATCC 33313]
Length = 185
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 85/183 (46%), Positives = 121/183 (66%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K RM + D +R ++R G +NP++L I VEYYG+ L +A + P++
Sbjct: 3 NAIIESAKERMSKAGDALRRELGNIRAGVANPSILRNITVEYYGAETPLNQLASVTVPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LLI P+DKS LK IE++I +SDLG+TP NDG VIRL +P LT E RK+L+K V ++E
Sbjct: 63 RVLLITPFDKSVLKGIEQSIFASDLGLTPANDGSVIRLVIPALTEETRKDLAKEVKAESE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+ KVAVRN+RRDA+ +K K LSED ++ D+QK TD +K +D I +KEKEL
Sbjct: 123 KAKVAVRNVRRDAMDDAKKALKNNDLSEDEAHNIEDDIQKATDAAIKNVDEIAAEKEKEL 182
Query: 274 LKV 276
L +
Sbjct: 183 LTI 185
>gi|57234843|ref|YP_181120.1| ribosome recycling factor [Dehalococcoides ethenogenes 195]
gi|123618956|sp|Q3Z9H9.1|RRF_DEHE1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|57225291|gb|AAW40348.1| ribosome recycling factor [Dehalococcoides ethenogenes 195]
Length = 185
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 125/174 (71%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M ++D++ + +RTGRS+PA+++ I+VEY G P + +A I PD + IQP+D
Sbjct: 12 KMAASLDVLSQELSGIRTGRSSPALVEHIKVEYAGVPTPINHLASIAAPDPRYITIQPWD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
+S L +IEKAI+ SDLG+ PNNDG +IRL +P L+ ERR+E+ K+V+K+ EE K+A+RN+
Sbjct: 72 RSCLSAIEKAIMKSDLGLMPNNDGNIIRLNIPPLSEERRQEMIKMVSKRLEEDKIAMRNV 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA+ +KL+K K++S+D++K S LQK+TD ++ K D + KE EL +V
Sbjct: 132 RRDAMDEMKKLEKSKEISQDDLKRGSDQLQKITDSFIAKADKLGADKETELKQV 185
>gi|33152634|ref|NP_873987.1| ribosome recycling factor [Haemophilus ducreyi 35000HP]
gi|38372405|sp|Q7VL83.1|RRF_HAEDU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|33148858|gb|AAP96376.1| ribosome recycling factor [Haemophilus ducreyi 35000HP]
Length = 185
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 131/181 (72%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I+KD + RME++++ ++++ + +RTGR+ P++LD I+VEYYGS L+ +A + D+
Sbjct: 3 NEIKKDTQQRMEKSLEALKSHISKIRTGRAQPSLLDGIQVEYYGSATPLRQVANVVAEDA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L + +D+S + ++EKAI++SDLG+ P++ G IR+ LP LT ERR++L K+V + E
Sbjct: 63 RTLAVNVFDRSLISAVEKAILTSDLGLNPSSAGATIRVPLPALTEERRRDLIKIVKNEGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+GK+A+RN+RRDA + L K+K++SED + ++QK+TD Y+KK+D + KEKEL
Sbjct: 123 QGKIAIRNVRRDANDQIKALLKDKEISEDEERKAQDEIQKITDGYVKKVDEVLMAKEKEL 182
Query: 274 L 274
L
Sbjct: 183 L 183
>gi|313896240|ref|ZP_07829793.1| ribosome recycling factor [Selenomonas sp. oral taxon 137 str.
F0430]
gi|320529259|ref|ZP_08030351.1| ribosome recycling factor [Selenomonas artemidis F0399]
gi|402302919|ref|ZP_10822020.1| ribosome recycling factor [Selenomonas sp. FOBRC9]
gi|312975039|gb|EFR40501.1| ribosome recycling factor [Selenomonas sp. oral taxon 137 str.
F0430]
gi|320138889|gb|EFW30779.1| ribosome recycling factor [Selenomonas artemidis F0399]
gi|400379524|gb|EJP32363.1| ribosome recycling factor [Selenomonas sp. FOBRC9]
Length = 185
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 125/173 (72%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M + I+ +R F+S+R GR+ P +LDK+ V YYG+P S+ +A++ P+ ++I P++K
Sbjct: 13 MTKAIESLRREFSSLRAGRATPNLLDKVMVPYYGTPTSVNQLAKVTVPEPHMIVITPWEK 72
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
S L IE AI SDLG++PN+DG VIRL +PQ T ERRKEL K V K+ EE KVA+RNIR
Sbjct: 73 SVLHDIEIAISKSDLGLSPNSDGNVIRLAIPQPTQERRKELIKTVGKKTEEAKVALRNIR 132
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RDA +A +KL+K+K+++ED K +QKL D+++K+++ + KEKE++++
Sbjct: 133 RDANEAIKKLEKDKEINEDESKRGQESVQKLVDKFVKQMEEMRAAKEKEVMEI 185
>gi|225570389|ref|ZP_03779414.1| hypothetical protein CLOHYLEM_06489 [Clostridium hylemonae DSM
15053]
gi|225160760|gb|EEG73379.1| hypothetical protein CLOHYLEM_06489 [Clostridium hylemonae DSM
15053]
Length = 183
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 123/174 (70%), Gaps = 1/174 (0%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +TI + ++R GR+NP +L+KI V YYG+P ++ +A ++ P++ + IQP++
Sbjct: 11 KMNKTIASLEGELAAIRAGRANPNVLNKIMVNYYGTPTPIQQVANVSVPEARMIHIQPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS +K IEKAI++SDLG+ P NDG IRL P+LT ERRKEL+K V K+ E KVA+RNI
Sbjct: 71 KSMVKEIEKAIMTSDLGINPTNDGSAIRLAFPELTEERRKELAKDVKKKGENAKVAIRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD +KL K ++SED +KDL +LQKLTD+++K++D + K KE++ V
Sbjct: 131 RRDGNDTLKKL-KGSEVSEDEIKDLEDELQKLTDKFIKEVDKAVEAKSKEVMTV 183
>gi|389575845|ref|ZP_10165873.1| ribosome recycling factor [Eubacterium cellulosolvens 6]
gi|389311330|gb|EIM56263.1| ribosome recycling factor [Eubacterium cellulosolvens 6]
Length = 184
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 123/174 (70%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +TI + + ++R GR+NP +LD+I VEYYG+P L+ +A I P++ + IQP++
Sbjct: 11 KMTKTIANLDSELATIRAGRANPHVLDRITVEYYGAPTPLQQVANITVPEARIIQIQPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
S +K I KAI S+LG+ P+ DG+V+RL P+LT +RRKEL+K V K+ E KVA+RNI
Sbjct: 71 ASMVKEIVKAIQMSELGINPSTDGKVVRLIFPELTEDRRKELTKDVKKKGEAAKVAIRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA +++KL+K + LSED + L D+QKLTD+Y+K ID + K KEL+ V
Sbjct: 131 RRDANDSFKKLEKAEDLSEDIIAGLEEDVQKLTDKYIKDIDKAVEVKSKELMTV 184
>gi|199597107|ref|ZP_03210539.1| Ribosome recycling factor [Lactobacillus rhamnosus HN001]
gi|258508619|ref|YP_003171370.1| ribosome recycling factor [Lactobacillus rhamnosus GG]
gi|385828281|ref|YP_005866053.1| ribosome recycling factor [Lactobacillus rhamnosus GG]
gi|418070799|ref|ZP_12708074.1| ribosome recycling factor [Lactobacillus rhamnosus R0011]
gi|421768761|ref|ZP_16205471.1| Ribosome recycling factor [Lactobacillus rhamnosus LRHMDP2]
gi|421771087|ref|ZP_16207748.1| Ribosome recycling factor [Lactobacillus rhamnosus LRHMDP3]
gi|423078868|ref|ZP_17067545.1| ribosome recycling factor [Lactobacillus rhamnosus ATCC 21052]
gi|199591911|gb|EDY99985.1| Ribosome recycling factor [Lactobacillus rhamnosus HN001]
gi|257148546|emb|CAR87519.1| Ribosome-recycling factor [Lactobacillus rhamnosus GG]
gi|259649926|dbj|BAI42088.1| ribosome recycling factor [Lactobacillus rhamnosus GG]
gi|357540219|gb|EHJ24236.1| ribosome recycling factor [Lactobacillus rhamnosus R0011]
gi|357549156|gb|EHJ31004.1| ribosome recycling factor [Lactobacillus rhamnosus ATCC 21052]
gi|411185610|gb|EKS52737.1| Ribosome recycling factor [Lactobacillus rhamnosus LRHMDP2]
gi|411186522|gb|EKS53646.1| Ribosome recycling factor [Lactobacillus rhamnosus LRHMDP3]
Length = 185
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 122/176 (69%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K M +T + ++ ++R GR+N ++L++I V+YYG+P L +A I P++ L I P
Sbjct: 10 KVNMGKTEESLQRELGNIRAGRANASLLNQITVDYYGAPTPLNQMAAITVPEARVLQISP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDKSSLK+IE AI +SDLG+ P NDG+VIRL +PQLT ERRKE++K V K +E K+AVR
Sbjct: 70 YDKSSLKNIETAINASDLGINPANDGDVIRLVIPQLTGERRKEIAKEVGKFSENAKIAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRR+ L ++ +K+ ++ED + L D+QK TD+ K+ID I KEKE+ +V
Sbjct: 130 NIRREGLDKLKRQEKDGDITEDELHRLEKDMQKATDDATKRIDEIAAAKEKEITEV 185
>gi|397576027|gb|EJK50025.1| hypothetical protein THAOC_31043 [Thalassiosira oceanica]
Length = 347
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 85/189 (44%), Positives = 125/189 (66%), Gaps = 4/189 (2%)
Query: 85 TIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKS 144
++EE+E + D + RM++T+ + N ++RTGR+N MLD++E +YYG+ +
Sbjct: 160 SVEEMEM----VTLDCEERMDKTMSNLADNLLTIRTGRANANMLDRVEADYYGAMTPINQ 215
Query: 145 IAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKEL 204
+A I+ P S L I P+DKSSL IEKAI+ S LG TPNNDG V+R+ +PQLT +RRKEL
Sbjct: 216 MATISVPSSQQLQISPFDKSSLVDIEKAIIYSGLGFTPNNDGNVLRINIPQLTEDRRKEL 275
Query: 205 SKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 264
K EE KVA+RNIRRD + + +K++K L ED D ++QK TD+++K++D
Sbjct: 276 LKQCKSIGEEAKVAIRNIRRDGVDSIKKMEKAGDLGEDQALDGIDEIQKATDKHVKQVDE 335
Query: 265 IYKQKEKEL 273
+KEKE+
Sbjct: 336 SVSKKEKEV 344
>gi|227114690|ref|ZP_03828346.1| ribosome recycling factor [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 185
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 128/182 (70%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I KD + RM++ ++ + N +RTGR++P++LD I+VEYYGS L+ +A I DS
Sbjct: 3 NEIRKDAETRMDKCVEAFKNQINRIRTGRASPSILDGIQVEYYGSATPLRQLANIVVEDS 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L I +D+S ++EKAI++SDLG+ P++ G VIR+ LP LT ERRK+L KVV +AE
Sbjct: 63 RTLAISVFDRSLGPAVEKAIMASDLGLNPSSAGTVIRVPLPPLTEERRKDLIKVVRGEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+G+++VRN+RRDA ++ L K+K +SED + D+QKLTD ++KK+D +KE EL
Sbjct: 123 QGRISVRNVRRDANDKFKALLKDKAISEDEERRAQDDVQKLTDNFIKKVDVALAEKEAEL 182
Query: 274 LK 275
++
Sbjct: 183 ME 184
>gi|407718211|ref|YP_006795616.1| ribosome recycling factor [Leuconostoc carnosum JB16]
gi|407241967|gb|AFT81617.1| ribosome recycling factor [Leuconostoc carnosum JB16]
Length = 181
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 125/178 (70%), Gaps = 3/178 (1%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D K RM+ D ++ S+RTGR+NP +LD+IEVEYYG+ L +A I+ P++ LLI
Sbjct: 7 DAKTRMQGAQDALQRELGSIRTGRANPHILDRIEVEYYGAMTPLNQVASISVPEARILLI 66
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
P+DK+ L I +AI SDLG+ P +DG V+RL +PQ+T E RK+L+K V + E+ KV+
Sbjct: 67 TPFDKTVLDEIIRAINVSDLGLNPASDGNVVRLAIPQMTEEGRKDLAKQVKAEGEKAKVS 126
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRN+RRDA+ + ++K+K++ ED+ ++ D+QKLTD+ +K ID I +KEKELL +
Sbjct: 127 VRNVRRDAM---DSVKKDKEIPEDDARNAEDDIQKLTDDNIKAIDMIATEKEKELLTI 181
>gi|388456528|ref|ZP_10138823.1| ribosome recycling factor [Fluoribacter dumoffii Tex-KL]
Length = 185
Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 132/180 (73%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I++D + RM++TI+ ++ + + VRTGR+N +LD ++V+YYG+ L +A I+ DS +
Sbjct: 5 IKQDSEKRMKKTIEALQNDLSKVRTGRANAGLLDHVQVDYYGTITPLNQVANISASDSRT 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
+L+ P++KS + +IEKAI++SDLG+ P+ G IR+ +P LT ERRKEL KVV + E+G
Sbjct: 65 ILVTPWEKSMVAAIEKAILTSDLGLNPSTAGSAIRVPMPPLTEERRKELIKVVRNEGEQG 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KV++RNIRRDA + L K+K +SED+ + + +QKLTD+Y+ +IDS+ +KEK+L++
Sbjct: 125 KVSIRNIRRDANSQLKDLVKDKTISEDDERRATEVIQKLTDKYISEIDSLLAEKEKDLME 184
>gi|73748219|ref|YP_307458.1| ribosome recycling factor [Dehalococcoides sp. CBDB1]
gi|289432268|ref|YP_003462141.1| ribosome recycling factor [Dehalococcoides sp. GT]
gi|452203227|ref|YP_007483360.1| ribosome recycling factor [Dehalococcoides mccartyi DCMB5]
gi|452204663|ref|YP_007484792.1| ribosome recycling factor [Dehalococcoides mccartyi BTF08]
gi|123620145|sp|Q3ZZC4.1|RRF_DEHSC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|73659935|emb|CAI82542.1| ribosome recycling factor [Dehalococcoides sp. CBDB1]
gi|288945988|gb|ADC73685.1| ribosome recycling factor [Dehalococcoides sp. GT]
gi|452110286|gb|AGG06018.1| ribosome recycling factor [Dehalococcoides mccartyi DCMB5]
gi|452111719|gb|AGG07450.1| ribosome recycling factor [Dehalococcoides mccartyi BTF08]
Length = 185
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 124/174 (71%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M ++D++ + +RTGRS+PA+++ I VEY G P + +A I+ PD + IQP+D
Sbjct: 12 KMSASLDVLLQELSGIRTGRSSPALVEHIRVEYAGVPTPINHLANISAPDPRYITIQPWD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
+S L +IEKAI+ SDLG+ PNNDG +IRL +P L+ ERR+E+ K+V K+ EE K+A+RN+
Sbjct: 72 RSCLSAIEKAIMKSDLGLMPNNDGNIIRLNIPPLSEERRQEMIKIVNKRLEEDKIAMRNV 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA+ +KL+K K++S+D++K S LQK+TD ++ K D + KE EL +V
Sbjct: 132 RRDAMDEMKKLEKAKEISQDDLKRGSDQLQKITDNFIAKADKLGADKEAELRQV 185
>gi|422319091|ref|ZP_16400173.1| frr protein [Achromobacter xylosoxidans C54]
gi|317406265|gb|EFV86509.1| frr protein [Achromobacter xylosoxidans C54]
Length = 186
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/183 (44%), Positives = 128/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I K +ARM +++D ++TN +RTGR++ +LD ++VEYYGSPV + + +N D+
Sbjct: 4 AEIRKSAEARMAKSLDTLKTNLAKIRTGRAHTGILDHVQVEYYGSPVPISQVGNVNLIDA 63
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
++ +QPY+KS +IEKAI SDLG+ P + G+ IR+ +P LT ERR++L+KVV + E
Sbjct: 64 RTISVQPYEKSMAAAIEKAIRESDLGLNPMSMGDSIRVPMPALTEERRRDLTKVVRSEGE 123
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+ KVAVRN+RR+A + +KL K+K++SED+ + D+QKLTD + ID + QKE E+
Sbjct: 124 DAKVAVRNLRREANEGLKKLVKDKEISEDDERRAQDDVQKLTDRSVADIDKMVTQKEAEI 183
Query: 274 LKV 276
+ V
Sbjct: 184 MTV 186
>gi|340354967|ref|ZP_08677662.1| ribosome recycling factor [Sporosarcina newyorkensis 2681]
gi|339622845|gb|EGQ27357.1| ribosome recycling factor [Sporosarcina newyorkensis 2681]
Length = 185
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 126/174 (72%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RME+ S+R GR+N ++LD+I V YYG+P L +A I+ P+ +++QPYD
Sbjct: 12 RMEKAHSAYTRQLASIRAGRANASLLDRISVIYYGAPTPLNQMAGISVPEPRLIVVQPYD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+++ IEKAI+ SD+G+TP+NDG VIRL +P LT ERRKEL K V ++AE+ KVA+RN+
Sbjct: 72 KTTIGEIEKAIMKSDIGITPSNDGSVIRLAVPALTEERRKELVKEVKREAEDAKVAIRNV 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD+ + +K++K+ +++ED ++ + +QK+TD++++KID K KE E+L++
Sbjct: 132 RRDSNEELKKIEKDGEITEDELRRYNDQVQKMTDDFIEKIDQTAKDKENEILEI 185
>gi|319940997|ref|ZP_08015334.1| ribosome-recycling factor [Sutterella wadsworthensis 3_1_45B]
gi|319805570|gb|EFW02365.1| ribosome-recycling factor [Sutterella wadsworthensis 3_1_45B]
Length = 186
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 123/174 (70%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M T++ +R +F +RTGR++ +LDKI V+YYG P L +AQ+ D+ +L +QP++
Sbjct: 13 KMGVTVEKLRDDFTRIRTGRASTGLLDKIRVDYYGCPTPLNQVAQVGVGDAHTLTVQPWE 72
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+ +K EKAI SDLG+ P G+ IR+ LP LT ERR+EL+KVV EE KVAVRN+
Sbjct: 73 KNMVKVCEKAIRDSDLGLNPATSGDTIRVPLPPLTEERRRELTKVVKGFGEEAKVAVRNL 132
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA E+L+K+K++SED+ + +++QKLTD ++ +ID + +K+KE++ V
Sbjct: 133 RRDANTQLERLEKDKEISEDDQRRYETEIQKLTDRFVAEIDKVIAEKDKEIMTV 186
>gi|421748129|ref|ZP_16185766.1| ribosome recycling factor [Cupriavidus necator HPC(L)]
gi|409773177|gb|EKN55023.1| ribosome recycling factor [Cupriavidus necator HPC(L)]
Length = 186
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/183 (43%), Positives = 129/183 (70%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I+K + +M++TI+ + + +RTGR++ +LD ++VEYYGSPV + +A I D+
Sbjct: 4 ADIKKSAEQKMQKTIEAFKADLAKIRTGRAHTGLLDHVQVEYYGSPVPISQVANIGLADA 63
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
++ +QP++K + ++EKAI +DLG+ P GEVIR+ +P LT ERRKEL+KVV + E
Sbjct: 64 RTISVQPWEKKMVGAVEKAIRDADLGLNPATIGEVIRVPMPPLTEERRKELTKVVKGEGE 123
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
KVAVRN+RRDA + ++KL K+K +SED+ + ++QKLTD Y+ +ID + +K+KE+
Sbjct: 124 SAKVAVRNLRRDANEQFKKLVKDKSISEDDERRGQDEVQKLTDRYVAEIDKLVAEKDKEI 183
Query: 274 LKV 276
+ V
Sbjct: 184 MTV 186
>gi|403722362|ref|ZP_10944997.1| ribosome-recycling factor [Gordonia rhizosphera NBRC 16068]
gi|403206674|dbj|GAB89328.1| ribosome-recycling factor [Gordonia rhizosphera NBRC 16068]
Length = 185
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 125/178 (70%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + +ME+ +++ + + ++RTGR+NPAM +K+ +EYYG+ + +A I TP++ ++I
Sbjct: 8 DAEEKMEKAVNVAKEDMGAIRTGRANPAMFNKVHIEYYGAITPITQVASITTPEARLVVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+PY+ S+L++IEKAI +SDLG+ P NDG +IR+ +PQLT +RRKEL K + E+ KVA
Sbjct: 68 KPYEASTLQAIEKAIRNSDLGVNPTNDGTIIRVAVPQLTEDRRKELVKQAKSKGEDAKVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RN+RR A+ +++QK+ + ED+V DL K T Y+ ++D + K KE ELL+V
Sbjct: 128 IRNVRRKAVDELKRIQKDGEAGEDDVVRAEKDLDKTTAGYVSQVDELVKHKENELLEV 185
>gi|417940658|ref|ZP_12583946.1| ribosome recycling factor [Streptococcus oralis SK313]
gi|343389539|gb|EGV02124.1| ribosome recycling factor [Streptococcus oralis SK313]
Length = 197
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 87/182 (47%), Positives = 123/182 (67%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K RM ++ + F +R GR+N ++LD+I VEYYG L IA I P++
Sbjct: 3 NAIVEKAKERMTQSHQSLAREFGGIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K E
Sbjct: 63 RVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
KVAVRNIRRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEK+
Sbjct: 123 NAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKKS 182
Query: 274 LK 275
K
Sbjct: 183 WK 184
>gi|270307747|ref|YP_003329805.1| ribosome recycling factor [Dehalococcoides sp. VS]
gi|270153639|gb|ACZ61477.1| ribosome recycling factor [Dehalococcoides sp. VS]
Length = 185
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 124/174 (71%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M ++D++ + +RTGRS+PA+++ I VEY G P + +A I+ PD + IQP+D
Sbjct: 12 KMTASLDVLSQELSGIRTGRSSPALVEHIRVEYAGVPTPINHLAGISAPDPRYITIQPWD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS L +IEKAI+ SDLG+ PNNDG +IRL +P L+ ERR+E+ K+V K+ EE K+A+RN+
Sbjct: 72 KSCLSAIEKAIMKSDLGLMPNNDGNIIRLNIPPLSEERRQEMIKMVNKRLEEDKIAMRNV 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA+ +KL+K K++S+D++K S LQK+TD ++ K D + KE EL +V
Sbjct: 132 RRDAMDEMKKLEKAKEISQDDLKRGSDQLQKITDSFIAKADKLGADKETELKQV 185
>gi|227892608|ref|ZP_04010413.1| ribosome recycling factor [Lactobacillus ultunensis DSM 16047]
gi|227865593|gb|EEJ73014.1| ribosome recycling factor [Lactobacillus ultunensis DSM 16047]
Length = 185
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/176 (46%), Positives = 124/176 (70%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K + M+++I + + S+R G +N A+LD +EVEYYG+P L ++ I P+ LL
Sbjct: 7 KKAQENMDKSIKVYQKKLASIRAGVANAALLDNVEVEYYGAPTPLTQMSSITIPEPRVLL 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I PYD+SSL +IE A+++S+LG+TP NDG+VIRL +PQLT ERR+E++K V K AEE K+
Sbjct: 67 ITPYDQSSLDNIEHALLASNLGLTPANDGKVIRLVIPQLTGERREEIAKEVGKYAEEAKI 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
AVRN+RRDA+ + ++ +K ++ED ++L +QK+TD+ KKID + K KE+
Sbjct: 127 AVRNVRRDAMNSLKRDEKNGDITEDEQRNLEKQVQKVTDDAAKKIDQLADDKRKEI 182
>gi|167756899|ref|ZP_02429026.1| hypothetical protein CLORAM_02448 [Clostridium ramosum DSM 1402]
gi|167703074|gb|EDS17653.1| ribosome recycling factor [Clostridium ramosum DSM 1402]
Length = 193
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/178 (49%), Positives = 121/178 (67%), Gaps = 4/178 (2%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D RM +TI+ + + +SVRTGR+NP MLD++ V YYGSP + IA I+ + L+I
Sbjct: 20 DTNERMTKTIESFQRDLSSVRTGRANPNMLDRVMVNYYGSPTPVNQIAGISVVEGRQLVI 79
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+PYDKSS+K IE I +DLG+TP NDGE+IR+ +P LT ERRKE +K V K AE KV+
Sbjct: 80 KPYDKSSIKDIEHGIYEADLGLTPQNDGEIIRIMVPALTEERRKEFAKNVWKFAENAKVS 139
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRD+ +K SED +K +QKLTD+++K+ID I K KEK+++ V
Sbjct: 140 IRNIRRDSNDEIKKTDG----SEDEIKAGQERVQKLTDKFVKEIDEIAKVKEKDIMTV 193
>gi|71275615|ref|ZP_00651900.1| Ribosome recycling factor [Xylella fastidiosa Dixon]
gi|170729576|ref|YP_001775009.1| ribosome recycling factor [Xylella fastidiosa M12]
gi|182680889|ref|YP_001829049.1| ribosome recycling factor [Xylella fastidiosa M23]
gi|71163506|gb|EAO13223.1| Ribosome recycling factor [Xylella fastidiosa Dixon]
gi|71730732|gb|EAO32806.1| Ribosome recycling factor [Xylella fastidiosa Ann-1]
gi|167964369|gb|ACA11379.1| ribosome recycling factor [Xylella fastidiosa M12]
gi|182630999|gb|ACB91775.1| ribosome recycling factor [Xylella fastidiosa M23]
Length = 190
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 87/188 (46%), Positives = 132/188 (70%)
Query: 89 IEAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQI 148
I+A + I++D + RM ++ID +R + SVRTGR++P++LD I+++ YG+ L +A I
Sbjct: 3 IQAMLNQIKQDAQDRMTKSIDALRNSLASVRTGRASPSLLDGIKIKAYGTDTPLNQVASI 62
Query: 149 NTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 208
+ + SL+I +DK+ K +EKAI +SDLG+TP G +IRL LP LT ERRKEL+KVV
Sbjct: 63 SVSEGRSLVITVFDKNMSKDVEKAIYASDLGLTPTVVGTLIRLNLPPLTEERRKELTKVV 122
Query: 209 AKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 268
+ E+ KVA+RNIRRDA + + + K K+++ED V+ D+QKLTD+ +K +D + K
Sbjct: 123 HSEGEDTKVAIRNIRRDANQQIKDMLKSKEITEDEVRHGEEDIQKLTDKAIKSVDEVVKS 182
Query: 269 KEKELLKV 276
KE+EL+ V
Sbjct: 183 KEQELMTV 190
>gi|295094737|emb|CBK83828.1| ribosome recycling factor [Coprococcus sp. ART55/1]
Length = 181
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 125/174 (71%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M+++++ + + ++R GR+NP +L+KI+VEYYG P ++ +A I P++ +L+I P++
Sbjct: 8 KMQKSVENLEAEYATIRAGRANPNILNKIKVEYYGVPTPMQQLANITVPEARTLVIAPWE 67
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
S +K IEKAI++SDLG+TPNNDG I L P+LT +RRKEL K + K+ E KVA+RNI
Sbjct: 68 PSLVKEIEKAIMNSDLGITPNNDGRNIILNFPELTEDRRKELVKDIKKKGEGAKVAIRNI 127
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA A +K++K +SED +KD +QKLTD+Y+ +ID + K KE++ V
Sbjct: 128 RRDANDAIKKMEKNGDISEDELKDNEDKIQKLTDKYVGQIDKAVESKSKEIMTV 181
>gi|147669001|ref|YP_001213819.1| ribosome recycling factor [Dehalococcoides sp. BAV1]
gi|146269949|gb|ABQ16941.1| ribosome recycling factor [Dehalococcoides sp. BAV1]
Length = 173
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 123/173 (71%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M ++D++ + +RTGRS+PA+++ I VEY G P + +A I+ PD + IQP+D+
Sbjct: 1 MSASLDVLLQELSGIRTGRSSPALVEHIRVEYAGVPTPINHLANISAPDPRYITIQPWDR 60
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
S L +IEKAI+ SDLG+ PNNDG +IRL +P L+ ERR+E+ K+V K+ EE K+A+RN+R
Sbjct: 61 SCLSAIEKAIMKSDLGLMPNNDGNIIRLNIPPLSEERRQEMIKIVNKRLEEDKIAMRNVR 120
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RDA+ +KL+K K++S+D++K S LQK+TD ++ K D + KE EL +V
Sbjct: 121 RDAMDEMKKLEKAKEISQDDLKRGSDQLQKITDNFIAKADKLGADKEAELRQV 173
>gi|237734608|ref|ZP_04565089.1| flagellar biosynthetic protein flhB [Mollicutes bacterium D7]
gi|365832619|ref|ZP_09374150.1| ribosome recycling factor [Coprobacillus sp. 3_3_56FAA]
gi|374625638|ref|ZP_09698054.1| ribosome recycling factor [Coprobacillus sp. 8_2_54BFAA]
gi|229382428|gb|EEO32519.1| flagellar biosynthetic protein flhB [Coprobacillus sp. D7]
gi|365260198|gb|EHM90163.1| ribosome recycling factor [Coprobacillus sp. 3_3_56FAA]
gi|373915298|gb|EHQ47069.1| ribosome recycling factor [Coprobacillus sp. 8_2_54BFAA]
Length = 181
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/178 (49%), Positives = 121/178 (67%), Gaps = 4/178 (2%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D RM +TI+ + + +SVRTGR+NP MLD++ V YYGSP + IA I+ + L+I
Sbjct: 8 DTNERMTKTIESFQRDLSSVRTGRANPNMLDRVMVNYYGSPTPVNQIAGISVVEGRQLVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+PYDKSS+K IE I +DLG+TP NDGE+IR+ +P LT ERRKE +K V K AE KV+
Sbjct: 68 KPYDKSSIKDIEHGIYEADLGLTPQNDGEIIRIMVPALTEERRKEFAKNVWKFAENAKVS 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRD+ +K SED +K +QKLTD+++K+ID I K KEK+++ V
Sbjct: 128 IRNIRRDSNDEIKKTDG----SEDEIKAGQERVQKLTDKFVKEIDEIAKVKEKDIMTV 181
>gi|375094092|ref|ZP_09740357.1| ribosome recycling factor [Saccharomonospora marina XMU15]
gi|374654825|gb|EHR49658.1| ribosome recycling factor [Saccharomonospora marina XMU15]
Length = 185
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 123/178 (69%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + +ME+ + + + + +SVRTGR+ PAM +I VEYYG+P L +A IN P++ ++
Sbjct: 8 DAEEKMEKAVSVAKDDLSSVRTGRATPAMFSRIVVEYYGAPTPLNQLASINIPEARMAVV 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+PYD S L +IEKAI SDLG+ P NDG +IR+ +PQLT ERR+E+ KV + E+ +++
Sbjct: 68 KPYDASQLNAIEKAIRDSDLGVNPTNDGTIIRVVIPQLTEERRREMVKVAKSKGEDARIS 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+R++RR A + +++ K+ + ED+V +LQ LTD+Y+ ++D + K KE ELL+V
Sbjct: 128 IRSVRRKAKEELDRIGKDGEAGEDDVARAEKELQNLTDKYVHQVDELVKHKETELLEV 185
>gi|395243036|ref|ZP_10420024.1| Ribosome-recycling factor [Lactobacillus hominis CRBIP 24.179]
gi|394484856|emb|CCI81032.1| Ribosome-recycling factor [Lactobacillus hominis CRBIP 24.179]
Length = 185
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 123/173 (71%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K+ M+++I + + + +R G +N ++LD I+VEYYG+P L +A ++ P++ L+I P
Sbjct: 10 KSNMDKSIAVYQKDLGGIRAGVANASLLDGIKVEYYGAPTPLNQMASVSIPEARVLMITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDKSSL IE AI++SDLG+TP NDG VIR+ +PQLT ERR+E++K V K AE+ K+A+R
Sbjct: 70 YDKSSLDDIEHAILASDLGITPANDGTVIRIVIPQLTGERRQEIAKQVGKLAEQAKIAIR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
N+RR+A+ ++ +K ++ED + L +QK+TDE KK+D + +K KE+
Sbjct: 130 NVRREAMDTLKRQEKNGDITEDEQRSLEKQVQKVTDESTKKVDQLADEKSKEI 182
>gi|417986958|ref|ZP_12627520.1| ribosome recycling factor [Lactobacillus casei 32G]
gi|410524022|gb|EKP98939.1| ribosome recycling factor [Lactobacillus casei 32G]
Length = 218
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 122/176 (69%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K M +T + ++ ++R GR+N ++L++I VEYYG+P L +A I P+ L + P
Sbjct: 10 KVNMGKTEESLQRELGNIRAGRANASLLNQITVEYYGAPTPLNQMAAITIPEPRVLQVSP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDKSSLK+IE A+ +SDLG+ P NDG+VIRL +PQLT ERRKE++K V K +E K+AVR
Sbjct: 70 YDKSSLKNIETALNASDLGINPANDGDVIRLVIPQLTGERRKEIAKEVGKYSESAKIAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRR+ L ++ +K+ ++ED++ L D+QK TD+ K+ID I KEK+LLK
Sbjct: 130 NIRREGLDKLKRQEKDGDITEDDLHRLEKDMQKATDDATKRIDEIAAAKEKKLLKF 185
>gi|270160174|ref|ZP_06188830.1| ribosome recycling factor [Legionella longbeachae D-4968]
gi|289165053|ref|YP_003455191.1| ribosome recycling factor [Legionella longbeachae NSW150]
gi|269988513|gb|EEZ94768.1| ribosome recycling factor [Legionella longbeachae D-4968]
gi|288858226|emb|CBJ12094.1| Ribosome recycling factor [Legionella longbeachae NSW150]
Length = 185
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/183 (44%), Positives = 133/183 (72%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I++D + RM++TI+ +R + + +RTGR+N +LD ++V+YYG+ L +A + DS
Sbjct: 3 NEIKQDSERRMKKTIEALRIDMSKIRTGRANVGLLDHVQVDYYGNLTPLSQVANVTASDS 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
++L+ P++KS + +IEKAI++SDLG+ P G IR+ +P LT ERRKEL KVV +AE
Sbjct: 63 RTILVTPWEKSMVSAIEKAILTSDLGLNPATTGNAIRVPMPPLTEERRKELIKVVRNEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+GKV++RNIRRDA + L K+K +SED+ + + +QKLTD+Y+ ++D++ +KEK+L
Sbjct: 123 QGKVSIRNIRRDANNQLKDLVKDKSISEDDERRAAEAIQKLTDKYILEVDALLAEKEKDL 182
Query: 274 LKV 276
++V
Sbjct: 183 MEV 185
>gi|71730815|gb|EAO32887.1| Ribosome recycling factor [Xylella fastidiosa Ann-1]
Length = 190
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 87/188 (46%), Positives = 132/188 (70%)
Query: 89 IEAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQI 148
I+A + I++D + RM ++ID +R + SVRTGR++P++LD I+++ YG+ L +A I
Sbjct: 3 IQAMLNQIKQDAQDRMTKSIDALRNSLASVRTGRASPSLLDGIKIKAYGTDTPLNQVASI 62
Query: 149 NTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 208
+ + SL+I +DK+ K +EKAI +SDLG+TP G +IRL LP LT ERRKEL+KVV
Sbjct: 63 SVSEGRSLVITVFDKNMSKDVEKAIYASDLGLTPTVVGTLIRLNLPPLTEERRKELTKVV 122
Query: 209 AKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 268
+ E+ KVA+RNIRRDA + + + K K+++ED V+ D+QKLTD+ +K +D + K
Sbjct: 123 HSEGEDTKVAIRNIRRDANQQIKDMLKSKEITEDEVRHGEEDIQKLTDKAIKSVDKVVKS 182
Query: 269 KEKELLKV 276
KE+EL+ V
Sbjct: 183 KEQELMTV 190
>gi|188588017|ref|YP_001920606.1| ribosome recycling factor [Clostridium botulinum E3 str. Alaska
E43]
gi|251779568|ref|ZP_04822488.1| ribosome recycling factor [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|238689676|sp|B2V4F7.1|RRF_CLOBA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|188498298|gb|ACD51434.1| ribosome recycling factor [Clostridium botulinum E3 str. Alaska
E43]
gi|243083883|gb|EES49773.1| ribosome recycling factor [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 185
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 86/181 (47%), Positives = 127/181 (70%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I K+ + +M++T+ ++++ +++ GR+NP+MLDKI+++YYGS L A I++P+
Sbjct: 5 IIKNAEEKMQKTVTVLKSELGTMKAGRANPSMLDKIQIDYYGSMCPLSQAANISSPEPRV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L+I P++K LK IEKAI+ SDLG+ P+NDG +IRL +P+LT E RK+L K V K EE
Sbjct: 65 LMITPWEKQLLKEIEKAILKSDLGLNPSNDGSIIRLVIPELTEETRKDLVKKVKKTGEES 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVA+R+IRRDA + L+K+ LSED VK D+QK TD +K+ID I KEKE+L
Sbjct: 125 KVAIRSIRRDANDKIKALKKDGDLSEDQVKKGEDDVQKKTDAIIKEIDKIIVDKEKEILA 184
Query: 276 V 276
+
Sbjct: 185 I 185
>gi|336395301|ref|ZP_08576700.1| ribosome recycling factor [Lactobacillus farciminis KCTC 3681]
Length = 185
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 120/173 (69%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K M +++D++ ++R G++N ++L + V YYG+ V L +A IN P++ L+I P
Sbjct: 10 KENMSKSVDVLSRELANIRAGKANASILSNVRVMYYGTEVPLNQVASINIPEARVLMITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDKSSL IE AI SSDLG+ P NDG VIRL +PQLT ERR+E++K V K+AE G++AVR
Sbjct: 70 YDKSSLDDIEHAINSSDLGLNPANDGSVIRLVIPQLTGERRQEIAKQVGKEAESGRIAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
N+RR+A+ +K QK ++ED + L D+QK+TD+ + ++D + KEKE+
Sbjct: 130 NVRREAMDDLKKQQKNNDITEDELHTLEKDVQKVTDDAIAQMDKLAADKEKEI 182
>gi|259501578|ref|ZP_05744480.1| ribosome recycling factor [Lactobacillus iners DSM 13335]
gi|302191448|ref|ZP_07267702.1| ribosome recycling factor [Lactobacillus iners AB-1]
gi|309804225|ref|ZP_07698302.1| ribosome recycling factor [Lactobacillus iners LactinV 11V1-d]
gi|309805502|ref|ZP_07699547.1| ribosome recycling factor [Lactobacillus iners LactinV 09V1-c]
gi|309807192|ref|ZP_07701166.1| ribosome recycling factor [Lactobacillus iners LactinV 03V1-b]
gi|309808808|ref|ZP_07702693.1| ribosome recycling factor [Lactobacillus iners LactinV 01V1-a]
gi|309809446|ref|ZP_07703304.1| ribosome recycling factor [Lactobacillus iners SPIN 2503V10-D]
gi|312875782|ref|ZP_07735774.1| ribosome recycling factor [Lactobacillus iners LEAF 2053A-b]
gi|315653424|ref|ZP_07906346.1| ribosome recycling factor [Lactobacillus iners ATCC 55195]
gi|325911800|ref|ZP_08174204.1| ribosome recycling factor [Lactobacillus iners UPII 143-D]
gi|325913480|ref|ZP_08175846.1| ribosome recycling factor [Lactobacillus iners UPII 60-B]
gi|329919873|ref|ZP_08276811.1| ribosome recycling factor [Lactobacillus iners SPIN 1401G]
gi|349612287|ref|ZP_08891508.1| ribosome-recycling factor [Lactobacillus sp. 7_1_47FAA]
gi|259167096|gb|EEW51591.1| ribosome recycling factor [Lactobacillus iners DSM 13335]
gi|308163628|gb|EFO65898.1| ribosome recycling factor [Lactobacillus iners LactinV 11V1-d]
gi|308165153|gb|EFO67391.1| ribosome recycling factor [Lactobacillus iners LactinV 09V1-c]
gi|308166413|gb|EFO68618.1| ribosome recycling factor [Lactobacillus iners LactinV 03V1-b]
gi|308167934|gb|EFO70067.1| ribosome recycling factor [Lactobacillus iners LactinV 01V1-a]
gi|308170118|gb|EFO72153.1| ribosome recycling factor [Lactobacillus iners SPIN 2503V10-D]
gi|311088686|gb|EFQ47138.1| ribosome recycling factor [Lactobacillus iners LEAF 2053A-b]
gi|315489349|gb|EFU78989.1| ribosome recycling factor [Lactobacillus iners ATCC 55195]
gi|325476306|gb|EGC79468.1| ribosome recycling factor [Lactobacillus iners UPII 143-D]
gi|325477249|gb|EGC80395.1| ribosome recycling factor [Lactobacillus iners UPII 60-B]
gi|328936963|gb|EGG33393.1| ribosome recycling factor [Lactobacillus iners SPIN 1401G]
gi|348608883|gb|EGY58850.1| ribosome-recycling factor [Lactobacillus sp. 7_1_47FAA]
Length = 185
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/180 (44%), Positives = 124/180 (68%), Gaps = 1/180 (0%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
IEK KA M ++I + +R G +N ++LD I+VEYYG P L ++ I P++
Sbjct: 6 IEK-AKANMSKSISVFEKELGGIRAGVANASLLDGIKVEYYGVPTPLTQMSSITIPEARV 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L+I P+DK++L +IE AI++SDLG+TP NDG V+R+ +PQLT ERR E++K V K AE+
Sbjct: 65 LMITPFDKTTLNNIEHAILASDLGITPANDGSVVRIVIPQLTGERRIEIAKKVGKLAEQA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
K+A+RNIRR+ + A +K QK+ +++ED++ D+QK+TD K +D++ +K KE+ K
Sbjct: 125 KIAIRNIRREGMDALKKQQKDGEITEDDLHKFEKDMQKITDNATKDVDALADKKSKEITK 184
>gi|334128441|ref|ZP_08502332.1| ribosome recycling factor [Centipeda periodontii DSM 2778]
gi|333387417|gb|EGK58614.1| ribosome recycling factor [Centipeda periodontii DSM 2778]
Length = 185
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/176 (46%), Positives = 127/176 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
+A M + I+ +R F+S+R GR+ P +LDK+ V YYG+P S+ +A++ P+ ++I P
Sbjct: 10 EASMNKAIEALRREFSSLRAGRATPNLLDKVMVPYYGTPTSVNQLAKVTVPEPHMIVITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
++KS L IE AI SDLG++PN+DG VIRL +PQ T ERRKEL K V K+ E+ KVA+R
Sbjct: 70 WEKSILHEIEIAISKSDLGLSPNSDGTVIRLAIPQPTQERRKELIKTVGKKTEDAKVALR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRRDA +A +KL+K+K+++ED K +QKL D+++K+++ + KEKE++++
Sbjct: 130 NIRRDANEAIKKLEKDKEINEDESKRGQDSVQKLVDKFVKQMEEMRAAKEKEVMEI 185
>gi|258545341|ref|ZP_05705575.1| ribosome recycling factor [Cardiobacterium hominis ATCC 15826]
gi|258519444|gb|EEV88303.1| ribosome recycling factor [Cardiobacterium hominis ATCC 15826]
Length = 185
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/182 (44%), Positives = 131/182 (71%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
SI+KD ARME+++ + + +RTGR+N ++LD ++VEYYGS V L A + D
Sbjct: 4 SIQKDAAARMEKSVKSLEHELSKIRTGRANVSLLDHVQVEYYGSMVPLSQAANVTVTDYR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
SL IQ ++++ + IEKA+++SDLG+TPN G+ I + LP LT ERRK+L K+V + E+
Sbjct: 64 SLTIQVWERNMVAVIEKALINSDLGLTPNTAGQNIHINLPPLTEERRKDLVKIVRNEGEQ 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
KVA+RN+RRDA ++ ++L +K+ SED+ + +++QKLTD+Y++++D + +KEKEL+
Sbjct: 124 AKVAIRNVRRDANQSVKQLVTDKQASEDDERRAEAEIQKLTDKYVEQVDKVLAEKEKELM 183
Query: 275 KV 276
+V
Sbjct: 184 EV 185
>gi|126173691|ref|YP_001049840.1| ribosome recycling factor [Shewanella baltica OS155]
gi|217974057|ref|YP_002358808.1| ribosome recycling factor [Shewanella baltica OS223]
gi|373948851|ref|ZP_09608812.1| Ribosome-recycling factor [Shewanella baltica OS183]
gi|386325308|ref|YP_006021425.1| Ribosome-recycling factor [Shewanella baltica BA175]
gi|386340449|ref|YP_006036815.1| Ribosome-recycling factor [Shewanella baltica OS117]
gi|418023475|ref|ZP_12662460.1| Ribosome-recycling factor [Shewanella baltica OS625]
gi|166231224|sp|A3D2K8.1|RRF_SHEB5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|254809529|sp|B8E7R3.1|RRF_SHEB2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|125996896|gb|ABN60971.1| ribosome recycling factor [Shewanella baltica OS155]
gi|217499192|gb|ACK47385.1| ribosome recycling factor [Shewanella baltica OS223]
gi|333819453|gb|AEG12119.1| Ribosome-recycling factor [Shewanella baltica BA175]
gi|334862850|gb|AEH13321.1| Ribosome-recycling factor [Shewanella baltica OS117]
gi|353537358|gb|EHC06915.1| Ribosome-recycling factor [Shewanella baltica OS625]
gi|373885451|gb|EHQ14343.1| Ribosome-recycling factor [Shewanella baltica OS183]
Length = 185
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/182 (43%), Positives = 126/182 (69%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
+I+KD + RM + +D + VRTGR++P++LD I+V YYG+ L +A + DS
Sbjct: 4 NIKKDAQERMGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGVEDSR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
+L + +D+S+++++EKAI+SSDLG+ P + G +R+ LP LT ERRK+ KVV +AE
Sbjct: 64 TLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRNEAEN 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
G++A+RN+RRDA+ +KL+K K +ED+V+ ++QK TD ++KKID I KE EL+
Sbjct: 124 GRIAIRNVRRDAISEVKKLEKAKACTEDDVRRSEEEVQKFTDAHIKKIDEILAAKEIELM 183
Query: 275 KV 276
+V
Sbjct: 184 EV 185
>gi|398341403|ref|ZP_10526106.1| ribosome recycling factor [Leptospira kirschneri serovar Bim str.
1051]
Length = 184
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/178 (46%), Positives = 128/178 (71%), Gaps = 4/178 (2%)
Query: 100 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQ 159
+K +M++TI++V+ +F ++RTGR+NP++++ I V+YY + + + I+ P+ L+I
Sbjct: 10 MKTKMDKTIELVKKDFGTIRTGRANPSLVEDIRVDYYDTQTPINQLGNISVPEPRILVIS 69
Query: 160 PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAV 219
PYDK +K IEKAI +S LG+ P NDG VIR+ +P+LT ERRKEL+KVV ++EE KVA+
Sbjct: 70 PYDKGIMKDIEKAIQTSGLGLQPTNDGVVIRIVIPELTGERRKELAKVVKSKSEEKKVAI 129
Query: 220 RNIRRDALKAYEKLQKE-KKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RNIRRDA+ E L+K + +S+D +K + +QK+TD Y+ KI S+ +KEKE+ +
Sbjct: 130 RNIRRDAM---EDLKKHTEGMSQDEIKSVQDQIQKITDSYIDKISSLTAEKEKEITTI 184
>gi|390629450|ref|ZP_10257445.1| Ribosome-recycling factor [Weissella confusa LBAE C39-2]
gi|390485354|emb|CCF29793.1| Ribosome-recycling factor [Weissella confusa LBAE C39-2]
Length = 185
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 116/174 (66%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM + D++R ++R G +NP++L + EYYG+ L +A I P++ LLI P+D
Sbjct: 12 RMGKAADVLRRELGNIRAGVANPSILRNVTAEYYGAETPLNQLASITVPEARVLLITPFD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS LK IE+AI +SDLG+TP NDG VIRL +P LT E RK L+K V ++E+ KVAVRN+
Sbjct: 72 KSILKDIEQAIFASDLGLTPANDGSVIRLVIPALTEETRKSLAKEVKGESEKAKVAVRNV 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA+ +K K +SED + L D+QK TD +K IDSI +KEKELL +
Sbjct: 132 RRDAMDDAKKALKNGDMSEDEARKLEDDIQKATDAAVKNIDSIAAEKEKELLTI 185
>gi|456862186|gb|EMF80764.1| ribosome recycling factor [Leptospira weilii serovar Topaz str.
LT2116]
Length = 184
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 128/178 (71%), Gaps = 4/178 (2%)
Query: 100 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQ 159
+K +ME+TID+++ + +VRTGR+NP++++ I V+YYG+ + + I+ P+ L+I
Sbjct: 10 MKTKMEKTIDLLKKDLGTVRTGRANPSLVEDIRVDYYGTLTPINQLGNISVPEPRMLVIS 69
Query: 160 PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAV 219
PYDK +K IEKAI +S LG+ P+NDG VIR+ +P+LT ERRKEL+K+V ++E+ KVA+
Sbjct: 70 PYDKGIMKDIEKAIQTSGLGLQPSNDGVVIRIVIPELTGERRKELAKIVKSKSEDKKVAI 129
Query: 220 RNIRRDALKAYEKLQKE-KKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RNIRRDA+ E L+K + LS+D VK + +QK TD Y+ KI ++ +KEKE+ +
Sbjct: 130 RNIRRDAM---EDLKKHTEGLSQDEVKTVQDQIQKTTDSYIDKISALTAEKEKEITTI 184
>gi|339624049|ref|ZP_08659838.1| ribosome Recycling Factor, RRF [Fructobacillus fructosus KCTC 3544]
Length = 181
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 124/174 (71%), Gaps = 3/174 (1%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M+ D +R +RTGR+NP +LD+++VEYYG+ V L +A I+ P++ LLI P+D
Sbjct: 11 KMKGAQDALRRELGEIRTGRANPRILDRVQVEYYGAMVPLNQVASISVPEARLLLITPFD 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K +L++I AI SDLG+ P +DG ++RL +PQ+T ERRKEL K V +AE+ KVAVRN+
Sbjct: 71 KGALEAIVTAINVSDLGLNPASDGNIVRLAIPQMTEERRKELVKEVKAEAEKSKVAVRNV 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA+ A ++K+K+L+ED V + +QKLTD+ +K ID I + KEKEL+ +
Sbjct: 131 RRDAMDA---IKKDKELTEDQVHESEDKVQKLTDDNIKAIDEIAEDKEKELMTI 181
>gi|407692435|ref|YP_006817224.1| ribosome recycling factor [Actinobacillus suis H91-0380]
gi|407388492|gb|AFU18985.1| ribosome recycling factor [Actinobacillus suis H91-0380]
Length = 185
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 131/181 (72%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I+KD + RME++++ ++++ + +RTGR+ P++LD I+VEYYGS L+ +A + D+
Sbjct: 3 NEIKKDAQDRMEKSLEALKSHISKIRTGRAQPSLLDGIQVEYYGSATPLRQVANVVAEDA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L + +D+S + ++EKAI++SDLG+ P++ G IR+ LP LT ERR++L K+V + E
Sbjct: 63 RTLAVNVFDRSLISAVEKAILTSDLGLNPSSAGATIRVPLPPLTEERRRDLIKIVKGEGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+GK+A+RN+RRDA + L K+K++SED + ++QK+TD Y+KK+D + KEKEL
Sbjct: 123 QGKIAIRNVRRDANDQIKALLKDKEISEDEERKAQDEIQKITDGYVKKVDEVLAAKEKEL 182
Query: 274 L 274
L
Sbjct: 183 L 183
>gi|357406286|ref|YP_004918210.1| ribosome recycling factor [Methylomicrobium alcaliphilum 20Z]
gi|351718951|emb|CCE24625.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Methylomicrobium alcaliphilum 20Z]
Length = 185
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/183 (44%), Positives = 130/183 (71%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S I +D RM ++++ +R F +RTGR++P++LD+I V YYG+ L +A + T DS
Sbjct: 3 SDILQDAAKRMGKSVEALRHEFTKIRTGRAHPSLLDQITVPYYGADTPLSQVANVATEDS 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L + P++K+ +K++EKAI++SDLG+ P+++G VIR+ LP LT ERR++L KVV ++AE
Sbjct: 63 RTLTVTPWEKTIVKAVEKAIMASDLGLNPSSNGNVIRIPLPPLTEERRRDLVKVVKQEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
G+VA+RNIRRDA + KEK +SED + +QKLTD+Y+K+I+ ++KE +L
Sbjct: 123 NGRVAIRNIRRDANSDIKDALKEKMISEDEARAAEDKIQKLTDQYIKEIEKHLEEKEADL 182
Query: 274 LKV 276
+ +
Sbjct: 183 MSI 185
>gi|322831591|ref|YP_004211618.1| ribosome recycling factor [Rahnella sp. Y9602]
gi|383188841|ref|YP_005198969.1| ribosome recycling factor [Rahnella aquatilis CIP 78.65 = ATCC
33071]
gi|384256705|ref|YP_005400639.1| ribosome recycling factor [Rahnella aquatilis HX2]
gi|321166792|gb|ADW72491.1| ribosome recycling factor [Rahnella sp. Y9602]
gi|371587099|gb|AEX50829.1| ribosome recycling factor [Rahnella aquatilis CIP 78.65 = ATCC
33071]
gi|380752681|gb|AFE57072.1| ribosome recycling factor [Rahnella aquatilis HX2]
Length = 185
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/180 (47%), Positives = 128/180 (71%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I+KD + RME+ ++ +T+ + +RTGR++P +LD I VEYYGS L+ +AQ+ DS +
Sbjct: 5 IKKDAEIRMEKCVESFKTHISKIRTGRASPGILDGIMVEYYGSATPLRQLAQVTVEDSRT 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L I +D+S ++EKAI++SDLG+ P++ G IR+ LP LT ERRK+L KVV +AE+G
Sbjct: 65 LAISVFDRSISAAVEKAIMTSDLGLNPSSAGATIRVPLPALTEERRKDLIKVVRGEAEQG 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
+V+VRN+RRDA + L K+K++SED + D+QKLTD ++KKID +KE EL++
Sbjct: 125 RVSVRNVRRDANDKTKALLKDKEISEDEDRRSQDDIQKLTDIFIKKIDVALSEKEAELME 184
>gi|422344147|ref|ZP_16425074.1| ribosome recycling factor [Selenomonas noxia F0398]
gi|355377665|gb|EHG24879.1| ribosome recycling factor [Selenomonas noxia F0398]
Length = 185
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 125/173 (72%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M + ID++R F+S+R GR+ P +LDK+ V YYG+P S+ +A++ P+ ++I P++K
Sbjct: 13 MNKAIDVLRREFSSLRAGRATPNLLDKVMVPYYGTPTSVNQLAKVMVPEPHMIVITPWEK 72
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
L IE AI SDLG++PN+DG VIRL +PQ T ERRKEL K V K+ EE KVA+RNIR
Sbjct: 73 EILHDIEIAISKSDLGLSPNSDGTVIRLAVPQPTQERRKELIKTVGKKTEEAKVALRNIR 132
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RDA +A +KL+K+K+++ED K +QKL D+++K+++ + KEKE++++
Sbjct: 133 RDANEAIKKLEKDKEINEDESKRGQDSVQKLVDKFVKQMEEMRASKEKEVMEI 185
>gi|261822596|ref|YP_003260702.1| ribosome recycling factor [Pectobacterium wasabiae WPP163]
gi|421082953|ref|ZP_15543832.1| Ribosome-recycling factor [Pectobacterium wasabiae CFBP 3304]
gi|261606609|gb|ACX89095.1| ribosome recycling factor [Pectobacterium wasabiae WPP163]
gi|385872910|gb|AFI91430.1| Ribosome-recycling factor [Pectobacterium sp. SCC3193]
gi|401702179|gb|EJS92423.1| Ribosome-recycling factor [Pectobacterium wasabiae CFBP 3304]
Length = 185
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 128/182 (70%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I KD + RM++ ++ + N +RTGR++P++LD I+VEYYGS L+ +A + DS
Sbjct: 3 NEIRKDAETRMDKCVEAFKNQINRIRTGRASPSILDGIQVEYYGSATPLRQLANVVVEDS 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L I +D+S ++EKAI++SDLG+ P++ G VIR+ LP LT ERRK+L KVV +AE
Sbjct: 63 RTLAISVFDRSLGPAVEKAIMASDLGLNPSSAGTVIRVPLPPLTEERRKDLIKVVRGEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+G+++VRN+RRDA ++ L K+K +SED + D+QKLTD ++KK+D +KE EL
Sbjct: 123 QGRISVRNVRRDANDKFKALLKDKAISEDEERRAQDDVQKLTDNFIKKVDVALAEKEAEL 182
Query: 274 LK 275
++
Sbjct: 183 ME 184
>gi|387771260|ref|ZP_10127426.1| ribosome recycling factor [Pasteurella bettyae CCUG 2042]
gi|386902465|gb|EIJ67305.1| ribosome recycling factor [Pasteurella bettyae CCUG 2042]
Length = 185
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/181 (43%), Positives = 131/181 (72%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I+KD + RME++++ +R + +RTGR+ P++LD I+VEYYGS L+ +A + D+
Sbjct: 3 NEIKKDAQDRMEKSLEALRGHIAKIRTGRAQPSLLDAIQVEYYGSATPLRQLANVVAEDA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L + +D+S ++++EKAI++SDLG+ P++ G IR+ LP LT ERR++L K+V + E
Sbjct: 63 RTLAVTVFDRSLIQAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKLVKGEGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+GKVA+RN+RRDA + L K+K++SE++ + D+QK+TD Y+KK+D + KEKEL
Sbjct: 123 QGKVAIRNVRRDANDQIKALLKDKEISENDQRKAEEDIQKITDTYIKKVDEVLADKEKEL 182
Query: 274 L 274
+
Sbjct: 183 M 183
>gi|229552426|ref|ZP_04441151.1| ribosome recycling factor [Lactobacillus rhamnosus LMS2-1]
gi|258539797|ref|YP_003174296.1| ribosome recycling factor [Lactobacillus rhamnosus Lc 705]
gi|385835448|ref|YP_005873222.1| ribosome recycling factor [Lactobacillus rhamnosus ATCC 8530]
gi|229314163|gb|EEN80136.1| ribosome recycling factor [Lactobacillus rhamnosus LMS2-1]
gi|257151473|emb|CAR90445.1| Ribosome-recycling factor [Lactobacillus rhamnosus Lc 705]
gi|355394939|gb|AER64369.1| ribosome recycling factor [Lactobacillus rhamnosus ATCC 8530]
Length = 185
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 122/176 (69%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K M +T + ++ ++R GR+N ++L++I V+YYG+P L +A I P++ L I P
Sbjct: 10 KVNMGKTEESLQRELGNIRAGRANASLLNQITVDYYGAPTPLNQMAAITVPEARVLQISP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDKSSLK+IE AI +SDLG+ P NDG+VIRL +PQLT ERRKE++K V K +E K+A+R
Sbjct: 70 YDKSSLKNIETAINASDLGINPANDGDVIRLVIPQLTGERRKEIAKEVGKFSENAKIAIR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRR+ L ++ +K+ ++ED + L D+QK TD+ K+ID I KEKE+ +V
Sbjct: 130 NIRREGLDKLKRQEKDGDITEDELHRLEKDMQKATDDATKRIDEIAAAKEKEITEV 185
>gi|229817669|ref|ZP_04447951.1| hypothetical protein BIFANG_02940 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
gi|229785458|gb|EEP21572.1| hypothetical protein BIFANG_02940 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
Length = 184
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/183 (44%), Positives = 126/183 (68%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+S+ + KA+M +T++ + NF +RTGR+NPA+L+ I V+YYG+P +K++A I P+
Sbjct: 2 ASVVEQAKAQMAKTVENTKENFAGIRTGRANPALLNGIMVDYYGAPTPIKAVASIGVPEP 61
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L + P+D S ++EKAI +SDLG++PN DG VIRLT+P+LT ERRKE K+ +AE
Sbjct: 62 RTLSVTPFDASQAGAVEKAIRNSDLGVSPNRDGNVIRLTMPELTEERRKEYVKLAKGKAE 121
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+GKVAVRNIRR + +K K+ + ED L DL K+T +ID++ + K+KE+
Sbjct: 122 DGKVAVRNIRRKTKETIDKSVKDGDMGEDEGDRLLKDLDKVTKSVTDEIDALLETKQKEI 181
Query: 274 LKV 276
++V
Sbjct: 182 MEV 184
>gi|423205633|ref|ZP_17192189.1| ribosome-recycling factor [Aeromonas veronii AMC34]
gi|404623908|gb|EKB20757.1| ribosome-recycling factor [Aeromonas veronii AMC34]
Length = 185
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/181 (45%), Positives = 132/181 (72%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I+ D K RM ++++ ++T + +RTGR++P++LD I+VEYYG+ LK +A + DS +
Sbjct: 5 IKNDAKERMGKSVESLKTQMSKIRTGRAHPSLLDGIQVEYYGAATPLKQLANVVAEDSRT 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L I +D+S ++++EKAI++SDLG+ P+++G+ +R+ LP LT ERR++L+KVV +AE
Sbjct: 65 LSISVFDRSMIQAVEKAILTSDLGLNPSSNGQSLRVPLPPLTEERRRDLTKVVRGEAENA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
+VAVRNIRRDA + L KEK++SED+ + ++QKLTD Y+K +D KEKEL++
Sbjct: 125 RVAVRNIRRDANADLKALLKEKEISEDDDRRAQEEIQKLTDSYIKLVDEALAAKEKELME 184
Query: 276 V 276
+
Sbjct: 185 I 185
>gi|218288327|ref|ZP_03492626.1| ribosome recycling factor [Alicyclobacillus acidocaldarius LAA1]
gi|218241686|gb|EED08859.1| ribosome recycling factor [Alicyclobacillus acidocaldarius LAA1]
Length = 187
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/179 (46%), Positives = 126/179 (70%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
++++ RM++ I +R F +VR GR+ P+MLD + VEYYG+ + + +A + +P+ L+
Sbjct: 9 QNLQERMDKAIQNLRREFATVRAGRAAPSMLDHVMVEYYGAQMPVNQVASVTSPEPRLLV 68
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I P+DKS L IEKAI SDLG+ P NDG VIRLT+P LT +RR+EL K V K AEE +V
Sbjct: 69 ISPWDKSMLSEIEKAIQKSDLGLNPANDGNVIRLTIPALTEQRRQELVKQVRKMAEEARV 128
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RNIRRD + +KL+K +SED+V+ L +Q+LTD+ + ++D + + KEK++ +V
Sbjct: 129 AIRNIRRDGNEEIKKLEKAGDISEDDVRRLMDRVQQLTDKAIAQVDRLLEDKEKDVTQV 187
>gi|407474023|ref|YP_006788423.1| ribosome recycling factor Frr [Clostridium acidurici 9a]
gi|407050531|gb|AFS78576.1| ribosome recycling factor Frr [Clostridium acidurici 9a]
Length = 185
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 86/184 (46%), Positives = 123/184 (66%)
Query: 93 KSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPD 152
K I +++K +M++TI+ + VR GR+NP +LD+I VEYYG+ L IA I+ P+
Sbjct: 2 KLEIHEEIKEKMQKTINSCADELSGVRAGRANPTLLDRITVEYYGAQTPLNQIANISAPE 61
Query: 153 SSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQA 212
L+IQP+D S L IEK+I+ SDLG+ P NDG+++RL +PQLT ERR EL+KVV K
Sbjct: 62 PRMLVIQPWDASILGEIEKSILKSDLGLNPTNDGKILRLMIPQLTEERRVELTKVVKKIG 121
Query: 213 EEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKE 272
E K+A+RN RRDA A +K+ K +++ED K +QK+TD +ID + KEKE
Sbjct: 122 ENSKIAIRNQRRDANDAIKKMVKSNEITEDEGKQAEDQVQKITDNSTDEIDKLVIAKEKE 181
Query: 273 LLKV 276
L++V
Sbjct: 182 LMEV 185
>gi|226703268|sp|B8CQ82.1|RRF_SHEPW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|212557758|gb|ACJ30212.1| Ribosome recycling factor [Shewanella piezotolerans WP3]
Length = 185
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 127/180 (70%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I+ D + RM++ ++ +T VRTGR++P++LD I+V YYGS LK +A ++ D+ +
Sbjct: 5 IKTDAQTRMDKCVESTKTQMAKVRTGRAHPSLLDTIQVPYYGSLTPLKQVASVSIGDART 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L + +D++ + ++EKAI+SSDLG+ P + G IR+ LP LT ERRK+L KVV +AE G
Sbjct: 65 LNVSVFDRTMIAAVEKAIMSSDLGLNPMSAGATIRIPLPALTEERRKDLIKVVRAEAENG 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
++AVRN+RRDA + L+KEK+ +ED+V+ ++QK TD ++KKID I KEKEL++
Sbjct: 125 RIAVRNVRRDANSDVKALEKEKECTEDDVRRTEDEVQKFTDAHIKKIDEILAAKEKELME 184
>gi|261367153|ref|ZP_05980036.1| ribosome recycling factor [Subdoligranulum variabile DSM 15176]
gi|282571279|gb|EFB76814.1| ribosome recycling factor [Subdoligranulum variabile DSM 15176]
Length = 184
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 84/183 (45%), Positives = 124/183 (67%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
SS K + +M ++D + S+R GR+NPA+LD++ V+YYGSP + IA ++ ++
Sbjct: 2 SSTTKPFEEKMNASVDHLVRELASIRAGRANPAVLDRVTVDYYGSPTPINQIAAVSVAEA 61
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
L I P+D+ LK I KAI +SD+G+ P +DG+VIRL P T ERRK+L+K V KQ E
Sbjct: 62 RILTITPWDRQMLKPISKAIQTSDIGINPIDDGQVIRLVFPAPTEERRKQLTKDVQKQGE 121
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
E KVAVRN+RRDA+ ++ ++K +L+ED+ K L + QKLTD+Y+K ID K KE+
Sbjct: 122 EAKVAVRNVRRDAMDKFKAMKKAGELTEDDQKKLEEETQKLTDKYVKMIDETCAAKNKEI 181
Query: 274 LKV 276
++V
Sbjct: 182 MEV 184
>gi|23099044|ref|NP_692510.1| ribosome recycling factor [Oceanobacillus iheyensis HTE831]
gi|33301568|sp|Q8EQV0.1|RRF_OCEIH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|22777272|dbj|BAC13545.1| ribosome recycling factor [Oceanobacillus iheyensis HTE831]
Length = 185
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/179 (44%), Positives = 124/179 (69%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+++ +ME+ + + N SVR GR+NP++LD + V+YYG+ L +A + P++ L
Sbjct: 7 KEMEQKMEQAVQALSKNLASVRAGRANPSILDSVFVDYYGASTPLNQLASVGAPEARLLT 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I PYDKS++ IEKAI +DLG++P++DG +IR+ +P LT ERRK+L KVV K +EE KV
Sbjct: 67 ITPYDKSAIGDIEKAIQKADLGLSPSSDGNIIRINIPALTQERRKDLVKVVGKYSEEAKV 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRD +K++K L+ED+++ D+Q T++Y+ KID + K KE E+++V
Sbjct: 127 QIRNIRRDTNDQLKKMEKNGDLTEDDLRGFQDDVQTSTNDYINKIDQLAKNKENEIMEV 185
>gi|404370933|ref|ZP_10976248.1| ribosome-recycling factor [Clostridium sp. 7_2_43FAA]
gi|226912945|gb|EEH98146.1| ribosome-recycling factor [Clostridium sp. 7_2_43FAA]
Length = 185
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 129/174 (74%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++TI +++++ +++R GR+NP MLD+I+V+YYGSP L +A I+ P+ L+I P++
Sbjct: 12 KMKKTISVLKSDLSTMRAGRANPTMLDRIQVDYYGSPCPLNQVANISAPEPRVLVISPWE 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS +K IEKAI++SDLG+ P+NDG VIRL +P+LT E R+ L K V K EE KVA+R+I
Sbjct: 72 KSLMKEIEKAILTSDLGINPSNDGSVIRLVVPELTEETRRNLVKNVKKTGEEAKVALRSI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RR+A + L+K+ +++ED +K+ +QK+ D ++K++D+I KEKE++ +
Sbjct: 132 RREANDKIKALKKDGEITEDELKNSEEKVQKIIDSFVKEVDTIIVAKEKEIMSI 185
>gi|386823780|ref|ZP_10110922.1| ribosome recycling factor [Serratia plymuthica PRI-2C]
gi|386379320|gb|EIJ20115.1| ribosome recycling factor [Serratia plymuthica PRI-2C]
Length = 185
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/179 (48%), Positives = 126/179 (70%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I KD +RME++++ + + +RTGR++P++LD I VEYYGS L+ +A + DS +
Sbjct: 5 IRKDADSRMEKSVEAFKNQISKIRTGRASPSILDGIMVEYYGSATPLRQLANVTVEDSRT 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L I +D+S ++EKAI+SSDLG+ P++ G VIR+ LP LT ERRK+L KVV +AE+G
Sbjct: 65 LAINLFDRSLGSAVEKAIMSSDLGLNPSSAGSVIRVPLPPLTEERRKDLIKVVRNEAEQG 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
+VAVRN+RRDA + L K+K++SED + D+QKLTD Y+K +D+ KEKEL+
Sbjct: 125 RVAVRNVRRDANDKVKALLKDKEISEDEDRRSQEDVQKLTDAYIKLLDAALADKEKELM 183
>gi|342217948|ref|ZP_08710583.1| ribosome recycling factor [Megasphaera sp. UPII 135-E]
gi|341592587|gb|EGS35472.1| ribosome recycling factor [Megasphaera sp. UPII 135-E]
Length = 186
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 133/174 (76%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++TI+ ++ +F+SVRTGR++ ++LD++ V+YYG+ +K +A ++ P+ + L I P++
Sbjct: 13 KMDKTIEALKRDFSSVRTGRASTSLLDRVMVDYYGAATPIKQVANVSAPEPTLLTIVPWE 72
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
++ L IE+AI+ SDLG+ PNNDG +IRL +P+ T ERRKEL+K V+K AEE KV +RNI
Sbjct: 73 RNILGDIERAILKSDLGLNPNNDGTMIRLEIPKPTEERRKELTKKVSKYAEESKVVIRNI 132
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA + +K++K K+++ED K++ +QKLTD+ +K ID + +KEKE+++V
Sbjct: 133 RRDANDSIKKMEKGKEVTEDESKEIQDQIQKLTDKKIKLIDELKSKKEKEVMEV 186
>gi|167766543|ref|ZP_02438596.1| hypothetical protein CLOSS21_01049 [Clostridium sp. SS2/1]
gi|317498945|ref|ZP_07957228.1| ribosome recycling factor [Lachnospiraceae bacterium 5_1_63FAA]
gi|429762653|ref|ZP_19295039.1| ribosome recycling factor [Anaerostipes hadrus DSM 3319]
gi|167711666|gb|EDS22245.1| ribosome recycling factor [Clostridium sp. SS2/1]
gi|291558581|emb|CBL37381.1| ribosome recycling factor [butyrate-producing bacterium SSC/2]
gi|316893778|gb|EFV15977.1| ribosome recycling factor [Lachnospiraceae bacterium 5_1_63FAA]
gi|429181287|gb|EKY22459.1| ribosome recycling factor [Anaerostipes hadrus DSM 3319]
Length = 181
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/179 (45%), Positives = 124/179 (69%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K + +M++++D + +F ++R GR+NP +LDK++V+YYG + + ++ P++ +++
Sbjct: 3 KQFEDKMQKSLDSMANDFMTIRAGRANPHVLDKVKVDYYGVATPVAQVGNVSVPEARTIM 62
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP++ + LK IEKAI+ SD+G+TP NDG+ IRL P LT ERRKEL+K V K+ EE KV
Sbjct: 63 IQPWEPNLLKEIEKAILVSDIGITPTNDGKAIRLNFPDLTEERRKELAKDVKKRGEEAKV 122
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
AVRNIRRDA +K K L++D KD +QK+TD+Y+K+ID K KE++ V
Sbjct: 123 AVRNIRRDANDFVKKQNKAGDLNDDQAKDEEDKVQKMTDKYIKQIDEAVDAKSKEIMTV 181
>gi|409997430|ref|YP_006751831.1| ribosome-recycling factor [Lactobacillus casei W56]
gi|406358442|emb|CCK22712.1| Ribosome-recycling factor [Lactobacillus casei W56]
Length = 218
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/177 (46%), Positives = 122/177 (68%)
Query: 100 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQ 159
K M +T + ++ ++R GR+N ++L++I VEYYG+P L +A I P+ L +
Sbjct: 9 AKVNMGKTEESLQRELGNIRAGRANASLLNQITVEYYGAPTPLNQMAAITIPEPRVLQVS 68
Query: 160 PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAV 219
PYDKSSLK+IE A+ +SDLG+ P NDG+VIRL +PQLT ERRKE++K V K +E K+A+
Sbjct: 69 PYDKSSLKNIETALNASDLGINPANDGDVIRLVIPQLTGERRKEIAKEVGKYSESAKIAI 128
Query: 220 RNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RNIRR+ L ++ +K+ ++ED++ L D+QK TD+ K+ID I KEK+LLK
Sbjct: 129 RNIRREGLDKLKRQEKDGDITEDDLHRLEKDMQKATDDATKRIDEIAAAKEKKLLKF 185
>gi|336322318|ref|YP_004602285.1| ribosome-recycling factor [Flexistipes sinusarabici DSM 4947]
gi|336105899|gb|AEI13717.1| Ribosome-recycling factor [Flexistipes sinusarabici DSM 4947]
Length = 185
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/179 (45%), Positives = 125/179 (69%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
KD+K +M++T++ R SVRTGR++ M D ++V YYG+P + +A + PD+ +
Sbjct: 7 KDLKKQMKKTLEHYRDELRSVRTGRASVTMFDNVKVNYYGTPTPVSQVATLQAPDARLVT 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D + + IEKAI SS++G P+NDG +IR+ +PQLT ERRKE+ K+V K +EE K+
Sbjct: 67 IQPWDPNMIAEIEKAIQSSNMGFNPSNDGTIIRVPIPQLTEERRKEIMKMVKKMSEEAKI 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RN RR + +KL+KEK++SED+ K +Q LTDEY+ KID + +KE E++++
Sbjct: 127 AIRNERRSGNEDIKKLEKEKEISEDDAKKALEQIQNLTDEYIDKIDELTSKKEDEVMQI 185
>gi|161507690|ref|YP_001577644.1| ribosome recycling factor [Lactobacillus helveticus DPC 4571]
gi|385813612|ref|YP_005850005.1| Ribosome-recycling factor [Lactobacillus helveticus H10]
gi|403514827|ref|YP_006655647.1| ribosome recycling factor [Lactobacillus helveticus R0052]
gi|172048311|sp|A8YVR6.1|RRF_LACH4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|160348679|gb|ABX27353.1| ribosome recycling factor Rrf [Lactobacillus helveticus DPC 4571]
gi|323466331|gb|ADX70018.1| Ribosome-recycling factor [Lactobacillus helveticus H10]
gi|403080265|gb|AFR21843.1| ribosome recycling factor [Lactobacillus helveticus R0052]
Length = 185
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/170 (47%), Positives = 123/170 (72%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M+++I + + S+R G +N A+LD ++VEYYG+P L ++ I P+ LLI PYD+
Sbjct: 13 MDKSIKVYQKRLASIRAGVANAALLDNVQVEYYGAPTPLTQMSSITIPEPRVLLITPYDQ 72
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
+SL IE A+++S+LG+TP NDG+VIRL +PQLT ERR+E++K V K AE+ K+AVRN+R
Sbjct: 73 NSLDDIEHALLASNLGLTPANDGKVIRLVIPQLTGERREEIAKEVGKYAEDAKIAVRNVR 132
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
R+A+ A +K QK+ ++ED ++L +QK+TD+ KKID + +K KE+
Sbjct: 133 REAMDALKKEQKDGNITEDEQRNLEKQVQKITDDSTKKIDQLADEKRKEI 182
>gi|398346764|ref|ZP_10531467.1| ribosome recycling factor [Leptospira broomii str. 5399]
Length = 184
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 126/177 (71%), Gaps = 2/177 (1%)
Query: 100 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQ 159
+K++M++T++++R +F +RTGR+NPA+++ I+VEYYG+ + + I+ P+ L+I
Sbjct: 10 MKSKMDKTVELLRKDFAGIRTGRANPALIEDIKVEYYGALTPINQLGNISVPEPRLLVIS 69
Query: 160 PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAV 219
PYDK +K IEK I +S LG+ P NDG VIR+ +P+LT ERRKEL+KVV ++EE KVAV
Sbjct: 70 PYDKGIIKDIEKGIQASGLGLQPTNDGSVIRIVIPELTGERRKELAKVVKSKSEEKKVAV 129
Query: 220 RNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RNIRRD L+ ++ + +S+D +K + +QK+TD Y+ KI ++ KEKE+ +
Sbjct: 130 RNIRRDTLEDLKR--HSEGISQDELKSVQDQVQKITDSYIDKISAVTADKEKEITTI 184
>gi|332289930|ref|YP_004420782.1| ribosome recycling factor [Gallibacterium anatis UMN179]
gi|330432826|gb|AEC17885.1| ribosome recycling factor [Gallibacterium anatis UMN179]
Length = 185
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/180 (44%), Positives = 131/180 (72%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
+I+ + + RME++++ ++ + +RTGR++P++LD I VEYYG+ L+ +A + D+
Sbjct: 4 TIKDEAQQRMEKSVEALKNQISKIRTGRAHPSLLDGIHVEYYGAATPLRQVANVVAEDAR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
+L I +D+S + ++EKAI++SDLG+ P + G VIR+ LP LT ERR++L+K+V +AE+
Sbjct: 64 TLAITVFDRSLISAVEKAIMASDLGLNPASAGTVIRVPLPPLTEERRRDLTKIVRAEAEQ 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
G+VAVRNIRRDA + L KEK++SE++ + ++QKLTD Y+KK+D +KEKEL+
Sbjct: 124 GRVAVRNIRRDANDKIKALLKEKEISENDERKAQDEIQKLTDLYVKKVDEALAEKEKELM 183
>gi|37524676|ref|NP_928020.1| ribosome releasing factor [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|39932036|sp|Q7N8P4.1|RRF_PHOLL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|36784101|emb|CAE12970.1| ribosome releasing factor [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 185
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 132/182 (72%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I+KD + RME++++ ++ + VRTGR++P++LD I VEYYG+P L+ +A + D+
Sbjct: 3 NEIKKDAQDRMEKSVEALKNQISKVRTGRASPSLLDGIIVEYYGAPTPLRQLANVIAEDA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L I +D++ +IEKAI++SDLG+ P++ G IR+ LP LT ERRK+L KVV +AE
Sbjct: 63 RTLAITVFDRTMTPAIEKAIMASDLGLNPSSAGTTIRVPLPPLTEERRKDLIKVVRSEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+G+V+VRNIRRDA + L K+K++SED+ + D+QKLTD ++KK+D +KE+EL
Sbjct: 123 QGRVSVRNIRRDANDKIKALLKDKEISEDDERRAQDDIQKLTDNFIKKVDEALTKKEEEL 182
Query: 274 LK 275
++
Sbjct: 183 ME 184
>gi|255659930|ref|ZP_05405339.1| ribosome recycling factor [Mitsuokella multacida DSM 20544]
gi|260847801|gb|EEX67808.1| ribosome recycling factor [Mitsuokella multacida DSM 20544]
Length = 185
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 125/174 (71%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM+++I+ ++ F S+R GR+ P++LDK+ V YYG+P + IA++ P+ ++IQP++
Sbjct: 12 RMKKSIEALKHEFASLRAGRATPSLLDKVMVNYYGAPTPVNQIAKVTVPEPRMIMIQPWE 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS L IE AI+ SDLG++PN+DG IRL++P LT ERR+EL K V K+ EE KVA+RNI
Sbjct: 72 KSILHDIEVAIMKSDLGLSPNSDGTAIRLSIPALTQERRQELVKTVNKKTEEAKVALRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD + +KL+K K+++ED K +QKL D+Y+K D+ + KEKE+++V
Sbjct: 132 RRDGNEDIKKLEKAKEITEDESKRGQESMQKLVDKYVKLADAAKEVKEKEVMEV 185
>gi|333447838|ref|ZP_08482780.1| ribosome Recycling Factor, RRF [Leuconostoc inhae KCTC 3774]
Length = 158
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/161 (50%), Positives = 122/161 (75%), Gaps = 3/161 (1%)
Query: 116 NSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVS 175
S+RTGR+NP +LD+IEVEYYG+ LK +A I+ P++ LLI P+DKS+L+ I +AI
Sbjct: 1 GSIRTGRANPHILDRIEVEYYGAMTPLKQVASISVPEARILLITPFDKSALEEIVRAINM 60
Query: 176 SDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQK 235
SDLG+ P +DG ++RL +PQ+T E RK+L+K V +AE+ KV++RN+RRDA+ + ++K
Sbjct: 61 SDLGLNPASDGNIVRLAIPQMTEEGRKDLAKQVKAEAEKAKVSIRNVRRDAM---DTVKK 117
Query: 236 EKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+K+L ED+V++ D+QKLTD+ +K ID I +KEKELL +
Sbjct: 118 DKELPEDDVRNAEDDVQKLTDDNIKAIDVIAAEKEKELLTI 158
>gi|336325817|ref|YP_004605783.1| ribosome recycling factor [Corynebacterium resistens DSM 45100]
gi|336101799|gb|AEI09619.1| Ribosome recycling factor [Corynebacterium resistens DSM 45100]
Length = 185
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 122/174 (70%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM +++ R ++RTGR+NPAM + I EYYG P + +A I+ P+ L+I+PY+
Sbjct: 12 RMTSSVEHAREELTTIRTGRANPAMFNGIIAEYYGVPTPITQMATISVPEPRMLIIKPYE 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
S+++ IE AI +SDLG+ P NDG+V+R+T+PQLT ERR++L KV + E+ K+A+RNI
Sbjct: 72 ASTMQDIENAIRNSDLGVNPTNDGQVLRVTVPQLTEERRRDLVKVAKSKGEDAKIAIRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RR ++ K+QK+ + ED VK DL+K+T +++++D++ + KEKEL++V
Sbjct: 132 RRKGMEGLGKIQKDGEAGEDEVKAAEKDLEKVTQNHVEQVDALVENKEKELMEV 185
>gi|332982468|ref|YP_004463909.1| ribosome recycling factor [Mahella australiensis 50-1 BON]
gi|332700146|gb|AEE97087.1| ribosome recycling factor [Mahella australiensis 50-1 BON]
Length = 186
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/183 (46%), Positives = 126/183 (68%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S + K + +M + ID+++ +++RTGR+NP +LD I V+YYG+ + + I +P+
Sbjct: 4 SELHKMTEQKMNKVIDVLKKELSTLRTGRANPQILDNITVDYYGASTPITQLGNITSPEP 63
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
L+I P+D +K +EKAI SDLG+ P+NDG+VIRL +P+LT ERRKEL K+ K E
Sbjct: 64 RLLVIAPWDPKIIKDMEKAIQKSDLGINPSNDGKVIRLVIPELTEERRKELVKLARKMGE 123
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
E KVAVRNIRR+A+ +K +K+ +SED K D+QKLTD + +IDSI +QKEK++
Sbjct: 124 EAKVAVRNIRREAIDHLKKQKKDGDISEDEEKRQQDDIQKLTDNKINEIDSIIEQKEKDI 183
Query: 274 LKV 276
+ V
Sbjct: 184 MIV 186
>gi|384564964|ref|ZP_10012068.1| ribosome recycling factor [Saccharomonospora glauca K62]
gi|384520818|gb|EIE98013.1| ribosome recycling factor [Saccharomonospora glauca K62]
Length = 185
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/178 (44%), Positives = 118/178 (66%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + +ME+ + + + SVRTGR+ PAM +I VEYYG+P L +A I P++ ++
Sbjct: 8 DAEEKMEKAVSFAKEDLASVRTGRATPAMFSRIVVEYYGAPTPLNQLASITIPEARMAVV 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+PYD S L +IEKAI SDLG+ P NDG +IR+ +PQLT ERRKE+ KV + EE +V+
Sbjct: 68 KPYDASQLATIEKAIRDSDLGVNPTNDGNIIRVVIPQLTEERRKEMVKVAKSKGEEARVS 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+R++RR A + +++ K+ + ED V +LQ LTD Y+ ++D + K KE ELL+V
Sbjct: 128 IRSVRRKAKEELDRIAKDGEAGEDEVARAEKELQNLTDRYVHQVDELVKNKEAELLEV 185
>gi|284008517|emb|CBA75037.1| ribosome recycling factor [Arsenophonus nasoniae]
Length = 185
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 132/182 (72%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I+KD + RME++++ +++ + VRTGR++P++LD I VEYYG+ L+ +A I DS
Sbjct: 3 NEIKKDAQERMEKSVEALKSQISKVRTGRASPSLLDGIVVEYYGAATPLRQLANITAEDS 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L I +D++ ++EKAI++SDLG+ P++ G +IR+ LP LT ERRK+L KVV AE
Sbjct: 63 RTLAITVFDRTLTPAVEKAIMASDLGLNPSSAGTIIRVPLPPLTEERRKDLIKVVRNDAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+G+V+VRN RRDA + L K+K++SED+ + ++QKLTD ++KK+D +QKEKEL
Sbjct: 123 QGRVSVRNARRDANDKIKALLKDKEISEDDERRAQDEIQKLTDNFIKKVDEALEQKEKEL 182
Query: 274 LK 275
++
Sbjct: 183 ME 184
>gi|170768435|ref|ZP_02902888.1| ribosome releasing factor [Escherichia albertii TW07627]
gi|170122539|gb|EDS91470.1| ribosome releasing factor [Escherichia albertii TW07627]
Length = 185
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 84/182 (46%), Positives = 128/182 (70%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S I KD + RM++ ++ +T + +RTGR++P++LD I VEYYG+P L+ +A + DS
Sbjct: 3 SDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDS 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L I +D+S ++EKAI++SDLG+ PN+ G IR+ LP LT ERRK+L+K+V +AE
Sbjct: 63 RTLKINVFDRSMSAAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+ +VAVRN+RRDA + L KEK++SED+ + D+QKLTD +KKI++ KE EL
Sbjct: 123 QARVAVRNVRRDANDKVKALLKEKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAEL 182
Query: 274 LK 275
++
Sbjct: 183 MQ 184
>gi|152999980|ref|YP_001365661.1| ribosome recycling factor [Shewanella baltica OS185]
gi|160874601|ref|YP_001553917.1| ribosome recycling factor [Shewanella baltica OS195]
gi|378707853|ref|YP_005272747.1| ribosome recycling factor [Shewanella baltica OS678]
gi|166231225|sp|A6WLA9.1|RRF_SHEB8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|189044074|sp|A9KUK8.1|RRF_SHEB9 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|151364598|gb|ABS07598.1| ribosome recycling factor [Shewanella baltica OS185]
gi|160860123|gb|ABX48657.1| ribosome recycling factor [Shewanella baltica OS195]
gi|315266842|gb|ADT93695.1| ribosome recycling factor [Shewanella baltica OS678]
Length = 185
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 126/182 (69%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
+I+KD + RM + +D + VRTGR++P++LD I+V YYG+ L +A + DS
Sbjct: 4 NIKKDAQERMGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGVEDSR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
+L + +D+S+++++EKAI+SSDLG+ P + G +R+ LP LT ERRK+ KVV +AE
Sbjct: 64 TLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRNEAEN 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
G++A+RN+RRDA+ +KL+K K +ED+V+ ++QK TD ++KK+D I KE EL+
Sbjct: 124 GRIAIRNVRRDAISEVKKLEKAKACTEDDVRRSEEEVQKFTDAHIKKVDEILAAKEIELM 183
Query: 275 KV 276
+V
Sbjct: 184 EV 185
>gi|317059748|ref|ZP_07924233.1| ribosome recycling factor [Fusobacterium sp. 3_1_5R]
gi|313685424|gb|EFS22259.1| ribosome recycling factor [Fusobacterium sp. 3_1_5R]
Length = 189
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 129/176 (73%), Gaps = 2/176 (1%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++TI+ + F S+R GR++ AMLD I+VE YGS + L +A ++ P++ L+I P+D
Sbjct: 14 KMQKTIEATKEKFTSIRAGRASVAMLDNIKVEQYGSDMPLNQVATVSAPEARLLVIDPWD 73
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+ + IEKAI++++LGM PNNDG V+RL +P+LT++RRKE K+ K+AE GK+AVRNI
Sbjct: 74 KTMIPKIEKAILAANLGMNPNNDGRVVRLVMPELTADRRKEYVKLAKKEAENGKIAVRNI 133
Query: 223 RRDALKAYEKLQKEKK--LSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
R+D A +K++K+K+ +SED +K +++Q LTD+ +K +D + +KEKE+ V
Sbjct: 134 RKDMNTALKKIEKDKESGMSEDELKRFEAEVQTLTDKTIKDLDDLLAKKEKEITTV 189
>gi|291519555|emb|CBK74776.1| ribosome recycling factor [Butyrivibrio fibrisolvens 16/4]
Length = 173
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 122/173 (70%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M ++ + + + F ++R GR+NP +LDKI V+YYG+P L+ +A I+ P+ + IQP++
Sbjct: 1 MTKSYNNLESEFTTIRAGRANPHILDKITVDYYGAPTPLQQVANISVPEPRLIQIQPWEP 60
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
S +K IEKAI SD+G+ P NDG++IRL P+LT ERRKE++K V K E+ KVA+RNIR
Sbjct: 61 SLVKEIEKAINMSDIGINPTNDGKLIRLVFPELTEERRKEIAKDVKKHGEDAKVAIRNIR 120
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RDA+ +K K++ +SED +KDL QK+TD+++ ++D + K KE++ V
Sbjct: 121 RDAIDHLKKHSKDEGVSEDEIKDLEDKCQKMTDKFIAEVDKAVEAKTKEIMTV 173
>gi|260654918|ref|ZP_05860406.1| ribosome recycling factor [Jonquetella anthropi E3_33 E1]
gi|424844784|ref|ZP_18269395.1| ribosome recycling factor [Jonquetella anthropi DSM 22815]
gi|260630420|gb|EEX48614.1| ribosome recycling factor [Jonquetella anthropi E3_33 E1]
gi|363986222|gb|EHM13052.1| ribosome recycling factor [Jonquetella anthropi DSM 22815]
Length = 183
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 129/177 (72%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
DVK M++ ID + F +RTGR++P ++ ++ +YYG+P LK +A ++ D+ +L I
Sbjct: 5 DVKTPMQKVIDHMNGEFLGIRTGRAHPGLVGDVKADYYGTPTPLKQMATVSVLDARTLQI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
PYD++++K+IEKAI+++++G+TP DG+VIRL++P+LT ERRKEL K V+K EE K+A
Sbjct: 65 TPYDQTAVKTIEKAILAANIGVTPVVDGKVIRLSMPELTGERRKELCKYVSKLGEEAKIA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
+RN+RRDA Y+K + ++SED +K +QK TD ++ K+D + K+KEKE+++
Sbjct: 125 LRNLRRDANDFYKKAEDAGEISEDQLKTELDVVQKETDSFVSKVDELVKEKEKEVME 181
>gi|390571409|ref|ZP_10251652.1| ribosome recycling factor [Burkholderia terrae BS001]
gi|420254933|ref|ZP_14757899.1| ribosome recycling factor [Burkholderia sp. BT03]
gi|389936646|gb|EIM98531.1| ribosome recycling factor [Burkholderia terrae BS001]
gi|398047270|gb|EJL39821.1| ribosome recycling factor [Burkholderia sp. BT03]
Length = 186
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 129/179 (72%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K + +M+R+ID + + + +RTGR++ +LD I+V+YYGSPV + +A + D+ ++
Sbjct: 8 KSAEQKMQRSIDAFKNDLSKIRTGRAHTGLLDHIQVDYYGSPVPISQVANLTLIDARTIG 67
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
+QP++K + +EKAI SDLG+ P + G+VIR+ +P LT ERR+EL+KVV + E KV
Sbjct: 68 VQPWEKKMITVVEKAIRESDLGLNPASQGDVIRVPMPALTEERRRELTKVVKSEGETAKV 127
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
AVRN+RRDA +A +KL K+K++SED+ + S D+QKLTD+++ +ID + + KE E++ V
Sbjct: 128 AVRNLRRDANEALKKLVKDKEISEDDERRGSDDIQKLTDKFVAEIDKLVQTKEGEIMTV 186
>gi|333897130|ref|YP_004471004.1| ribosome-recycling factor [Thermoanaerobacterium xylanolyticum
LX-11]
gi|333112395|gb|AEF17332.1| Ribosome-recycling factor [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 184
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/179 (46%), Positives = 125/179 (69%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K + +M+++I +++ S+R GR+NPA+LD+I ++YYG+ + +A I P+ ++
Sbjct: 6 KSTEEKMKKSIAVLKNELMSIRAGRANPALLDRISIDYYGTMTPINKLATITAPEPKIII 65
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D S + IEKAI SDL + P +DG++IRL P LT ERRKEL K+V K+ EE KV
Sbjct: 66 IQPWDTSKISEIEKAIQKSDLNINPTSDGKIIRLVFPDLTEERRKELVKLVHKKGEEAKV 125
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
AVR IRRDA A +K+ K ++SED ++QKLTD+Y+K+ID I +QKEKE++++
Sbjct: 126 AVRQIRRDANDAIKKMDKNGEISEDEKLKSEENVQKLTDKYIKEIDKILEQKEKEIMEI 184
>gi|239631340|ref|ZP_04674371.1| ribosome recycling factor [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|301066628|ref|YP_003788651.1| ribosome recycling factor [Lactobacillus casei str. Zhang]
gi|417980862|ref|ZP_12621540.1| ribosome recycling factor [Lactobacillus casei 12A]
gi|417983599|ref|ZP_12624235.1| ribosome recycling factor [Lactobacillus casei 21/1]
gi|417989829|ref|ZP_12630328.1| ribosome recycling factor [Lactobacillus casei A2-362]
gi|417993096|ref|ZP_12633446.1| ribosome recycling factor [Lactobacillus casei CRF28]
gi|417996450|ref|ZP_12636729.1| ribosome recycling factor [Lactobacillus casei M36]
gi|417999317|ref|ZP_12639527.1| ribosome recycling factor [Lactobacillus casei T71499]
gi|418002256|ref|ZP_12642378.1| ribosome recycling factor [Lactobacillus casei UCD174]
gi|418008179|ref|ZP_12648047.1| ribosome recycling factor [Lactobacillus casei UW4]
gi|418011017|ref|ZP_12650787.1| ribosome recycling factor [Lactobacillus casei Lc-10]
gi|418014518|ref|ZP_12654114.1| ribosome recycling factor [Lactobacillus casei Lpc-37]
gi|239525805|gb|EEQ64806.1| ribosome recycling factor [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|300439035|gb|ADK18801.1| Ribosome recycling factor [Lactobacillus casei str. Zhang]
gi|410524203|gb|EKP99119.1| ribosome recycling factor [Lactobacillus casei 12A]
gi|410527868|gb|EKQ02730.1| ribosome recycling factor [Lactobacillus casei 21/1]
gi|410532008|gb|EKQ06719.1| ribosome recycling factor [Lactobacillus casei CRF28]
gi|410535296|gb|EKQ09921.1| ribosome recycling factor [Lactobacillus casei M36]
gi|410537078|gb|EKQ11658.1| ribosome recycling factor [Lactobacillus casei A2-362]
gi|410539337|gb|EKQ13870.1| ribosome recycling factor [Lactobacillus casei T71499]
gi|410544684|gb|EKQ19005.1| ribosome recycling factor [Lactobacillus casei UCD174]
gi|410547123|gb|EKQ21361.1| ribosome recycling factor [Lactobacillus casei UW4]
gi|410553167|gb|EKQ27173.1| ribosome recycling factor [Lactobacillus casei Lc-10]
gi|410553566|gb|EKQ27568.1| ribosome recycling factor [Lactobacillus casei Lpc-37]
Length = 185
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 122/176 (69%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K M +T + ++ ++R GR+N ++L++I VEYYG+P L +A I P+ L + P
Sbjct: 10 KVNMGKTEESLQRELGNIRAGRANASLLNQITVEYYGAPTPLNQMAAITIPEPRVLQVSP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDKSSLK+IE A+ +SDLG+ P NDG+VIRL +PQLT ERRKE++K V K +E K+AVR
Sbjct: 70 YDKSSLKNIETALNASDLGINPANDGDVIRLVIPQLTGERRKEIAKEVGKYSESAKIAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRR+ L ++ +K+ ++ED++ L D+QK TD+ K+ID I KEKE+ +V
Sbjct: 130 NIRREGLDKLKRQEKDGDITEDDLHRLEKDMQKATDDATKRIDEIAAAKEKEITEV 185
>gi|410632356|ref|ZP_11343017.1| ribosome recycling factor [Glaciecola arctica BSs20135]
gi|410148126|dbj|GAC19884.1| ribosome recycling factor [Glaciecola arctica BSs20135]
Length = 185
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/181 (46%), Positives = 130/181 (71%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I D + RME++I +++ + +RTGR++P++LD I V YYG+ LK +A I DS +
Sbjct: 5 INVDARQRMEKSISVLKGQLSKIRTGRAHPSLLDSIMVPYYGTDTPLKQLANIIAEDSRT 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L + +DKSS K++EKAI+ SDLG+ P + G V+R+ +P LT +RRK+L +VV +AE+G
Sbjct: 65 LALTVFDKSSAKAVEKAIMQSDLGLNPMSAGSVMRIPMPALTEDRRKDLIRVVRAEAEQG 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVA+RNIRRDA ++L KEK++SED+ + D+QKLTD ++K++D I KEK+L++
Sbjct: 125 KVAIRNIRRDANSDIKELLKEKEISEDDSRRGEDDVQKLTDAFVKEVDEILVAKEKDLME 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|421860619|ref|ZP_16292725.1| ribosome recycling factor [Paenibacillus popilliae ATCC 14706]
gi|410829805|dbj|GAC43162.1| ribosome recycling factor [Paenibacillus popilliae ATCC 14706]
Length = 184
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 128/182 (70%), Gaps = 1/182 (0%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
S++K + RME+ I ++ + + R GR++ A+LD+I+VEYYG+ + +A I+TPD
Sbjct: 4 SVKKHAEERMEKAIVALKRDLATQRAGRASAALLDRIQVEYYGAMTPINQLANISTPDPR 63
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
+LLIQP+D SSL IE+A++ SDLG+TP NDG +IR+++P LT ERR EL + K E+
Sbjct: 64 TLLIQPWDNSSLGEIERAVMKSDLGLTPANDGSIIRISIPALTQERRTELVRQTKKFGED 123
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
KVA+RNIRRDA +KL+K +SED+ D+QK+TD+Y+ ++D + KEK+++
Sbjct: 124 AKVAIRNIRRDANDDIKKLEK-TDISEDDSHRHQEDIQKMTDKYIAEVDKVLAAKEKDIM 182
Query: 275 KV 276
+V
Sbjct: 183 EV 184
>gi|342732396|ref|YP_004771235.1| ribosome recycling factor [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|417961544|ref|ZP_12603950.1| Ribosome-recycling factor [Candidatus Arthromitus sp. SFB-2]
gi|417964780|ref|ZP_12606448.1| Ribosome-recycling factor [Candidatus Arthromitus sp. SFB-4]
gi|417967104|ref|ZP_12608294.1| Ribosome-recycling factor [Candidatus Arthromitus sp. SFB-5]
gi|417968399|ref|ZP_12609424.1| Ribosome-recycling factor [Candidatus Arthromitus sp. SFB-co]
gi|418016191|ref|ZP_12655756.1| ribosome recycling factor [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418372663|ref|ZP_12964755.1| Ribosome-recycling factor [Candidatus Arthromitus sp. SFB-mouse-SU]
gi|342329851|dbj|BAK56493.1| ribosome recycling factor [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|345506526|gb|EGX28820.1| ribosome recycling factor [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|380333080|gb|EIA23739.1| Ribosome-recycling factor [Candidatus Arthromitus sp. SFB-2]
gi|380338068|gb|EIA27012.1| Ribosome-recycling factor [Candidatus Arthromitus sp. SFB-5]
gi|380339763|gb|EIA28445.1| Ribosome-recycling factor [Candidatus Arthromitus sp. SFB-co]
gi|380340090|gb|EIA28723.1| Ribosome-recycling factor [Candidatus Arthromitus sp. SFB-4]
gi|380342332|gb|EIA30777.1| Ribosome-recycling factor [Candidatus Arthromitus sp. SFB-mouse-SU]
Length = 185
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 84/177 (47%), Positives = 124/177 (70%)
Query: 100 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQ 159
+K +M +T+D++ SVR GR+NP MLD++EVEYYG L +A I+TP+S L+IQ
Sbjct: 9 LKEKMLKTMDVLVGELGSVRVGRANPNMLDRVEVEYYGVMTRLNQLANISTPESRILMIQ 68
Query: 160 PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAV 219
P++K+ LK IEKAI+ SDLG+ PNNDG IRL +P++T E R+ K K AE+ KVA+
Sbjct: 69 PWEKNILKDIEKAILKSDLGLMPNNDGSSIRLIIPEMTEETRRNTVKKAKKIAEDSKVAL 128
Query: 220 RNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
R +RRDA + L+K+ ++ED++K D+QK TD+++KK+D I KEKE++ +
Sbjct: 129 RALRRDANDKVKLLKKDGSITEDDLKKAEDDIQKQTDKFVKKVDEIVANKEKEIMSI 185
>gi|427392490|ref|ZP_18886495.1| ribosome recycling factor [Alloiococcus otitis ATCC 51267]
gi|425731451|gb|EKU94269.1| ribosome recycling factor [Alloiococcus otitis ATCC 51267]
Length = 185
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 125/177 (70%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
+D++ RM + ID + +R GR+N +++++++V YYG+P L +AQI+ P++ LL
Sbjct: 7 QDLENRMTKAIDSLNYQLGGIRAGRANASLVERVQVNYYGAPTPLNQLAQISVPEARVLL 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I PYDKS+LK IE AI SD+G+ P +DGEVIRL +P LT ERRKE++K V ++ E+ KV
Sbjct: 67 ISPYDKSTLKDIETAIQKSDIGIPPASDGEVIRLVVPALTEERRKEIAKKVGEEEEKAKV 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
++RNIRR+ + + +K +K ++SED K +QKLTD+Y + D + +QKE+E+L
Sbjct: 127 SIRNIRREGMDSLKKSEKNSEISEDEKKRYEDQVQKLTDKYTDQADQLSRQKEREIL 183
>gi|336310912|ref|ZP_08565881.1| ribosome recycling factor [Shewanella sp. HN-41]
gi|335865592|gb|EGM70608.1| ribosome recycling factor [Shewanella sp. HN-41]
Length = 185
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/183 (43%), Positives = 127/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I+KD + RM + ++ + VRTGR++P++LD I+V YYG+ L +A + DS
Sbjct: 3 TDIKKDAQERMGKCVEATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGVEDS 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L + +D+S+++++EKAI+SSDLG+ P + G +R+ LP LT ERRK+ KVV +AE
Sbjct: 63 RTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRNEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
G+VA+RN+RRDA+ +KL+K K+ +ED+V+ ++QK TD ++KKID I KE EL
Sbjct: 123 AGRVAIRNVRRDAISEVKKLEKAKECTEDDVRRSEEEVQKFTDAHIKKIDEILAAKEIEL 182
Query: 274 LKV 276
++V
Sbjct: 183 MEV 185
>gi|334144058|ref|YP_004537214.1| Ribosome-recycling factor [Thioalkalimicrobium cyclicum ALM1]
gi|333964969|gb|AEG31735.1| Ribosome-recycling factor [Thioalkalimicrobium cyclicum ALM1]
Length = 185
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/183 (44%), Positives = 126/183 (68%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S I D RM++++D + NF +RTGR++P++LD ++V+YYGS V + +A IN DS
Sbjct: 3 SEIRDDADLRMQKSVDTLVANFAKIRTGRAHPSILDSVKVDYYGSEVPISQVANINIEDS 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L +QP+++ L+ IEKAI+ SDLG+ P G ++R+ +P LT ERRKE +K+ +AE
Sbjct: 63 RTLAVQPWEQPMLQKIEKAIMMSDLGINPVTTGNMMRIPMPMLTEERRKEFAKLARSEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
KVA+RNIRRDA + L K+K+++ED + D+QKLTD+++ +IDS+ KE L
Sbjct: 123 NAKVAIRNIRRDANGDVKNLLKDKEITEDEARRSDDDIQKLTDKHVAQIDSLLSDKEASL 182
Query: 274 LKV 276
L++
Sbjct: 183 LEI 185
>gi|167624892|ref|YP_001675186.1| ribosome recycling factor [Shewanella halifaxensis HAW-EB4]
gi|189044075|sp|B0TP80.1|RRF_SHEHH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|167354914|gb|ABZ77527.1| ribosome recycling factor [Shewanella halifaxensis HAW-EB4]
Length = 185
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/180 (44%), Positives = 128/180 (71%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I+ D + RM++ ++ +T VRTGR++P++LD I+V YYGS LK +A ++ D+ +
Sbjct: 5 IKSDAQTRMDKCVESTKTQMAKVRTGRAHPSLLDTIQVPYYGSLTPLKQVASVSIGDART 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L + +D++ + ++EKAI+SSDLG+ P + G IR+ LP LT ERRK+L KVV +AE G
Sbjct: 65 LTVSVFDRTMIAAVEKAIMSSDLGLNPMSAGATIRIPLPALTEERRKDLIKVVRAEAENG 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
++A+RN+RRDA ++L+KEK+ +ED+V+ D+QKLTD ++K +D + KEKEL++
Sbjct: 125 RIAIRNVRRDANSNVKELEKEKECTEDDVRRSEDDVQKLTDAHIKLVDDVLAAKEKELME 184
>gi|257439607|ref|ZP_05615362.1| ribosome recycling factor [Faecalibacterium prausnitzii A2-165]
gi|257197974|gb|EEU96258.1| ribosome recycling factor [Faecalibacterium prausnitzii A2-165]
Length = 184
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/183 (43%), Positives = 130/183 (71%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
SS K + +M+ +++ + +VR GR+NPA+LDK+ V+YYG+P ++ +A + ++
Sbjct: 2 SSNTKAFEEKMKSSVEHLDRELAAVRAGRANPAVLDKVSVDYYGAPTPIQQVASVAVSEA 61
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L I P+D++ L++I KAI++SD+G+TP +DG IRL P T ERRK+L+K VAK E
Sbjct: 62 RTLTITPWDRTLLRAISKAIMASDVGITPIDDGSTIRLNFPAPTEERRKQLAKEVAKLGE 121
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
E KVAVRN+RRDA+ + ++K +L+ED K + ++QKLTD+Y+K ID+ ++K+KE+
Sbjct: 122 EAKVAVRNVRRDAMDKAKAMKKAGELTEDTQKTMEEEVQKLTDKYIKNIDAAVEEKQKEI 181
Query: 274 LKV 276
+ V
Sbjct: 182 MSV 184
>gi|32034388|ref|ZP_00134578.1| COG0233: Ribosome recycling factor [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|126208052|ref|YP_001053277.1| ribosome recycling factor [Actinobacillus pleuropneumoniae serovar
5b str. L20]
gi|165975984|ref|YP_001651577.1| ribosome recycling factor [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|190149883|ref|YP_001968408.1| ribosome recycling factor [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|303251563|ref|ZP_07337737.1| ribosome recycling factor [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|303252201|ref|ZP_07338369.1| ribosome recycling factor [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|307245431|ref|ZP_07527519.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar
1 str. 4074]
gi|307247544|ref|ZP_07529588.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar
2 str. S1536]
gi|307249778|ref|ZP_07531756.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar
4 str. M62]
gi|307252124|ref|ZP_07534023.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|307254385|ref|ZP_07536223.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar
9 str. CVJ13261]
gi|307258844|ref|ZP_07540576.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar
11 str. 56153]
gi|307261026|ref|ZP_07542708.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar
12 str. 1096]
gi|307263207|ref|ZP_07544827.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar
13 str. N273]
gi|322514208|ref|ZP_08067270.1| ribosome recycling factor [Actinobacillus ureae ATCC 25976]
gi|166230406|sp|A3MZT6.1|RRF_ACTP2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|238687536|sp|B0BUC8.1|RRF_ACTPJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|238692331|sp|B3GXB4.1|RRF_ACTP7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|126096844|gb|ABN73672.1| ribosome recycling factor [Actinobacillus pleuropneumoniae serovar
5b str. L20]
gi|165876085|gb|ABY69133.1| ribosome recycling factor [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|189915014|gb|ACE61266.1| ribosome recycling factor [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|302648984|gb|EFL79172.1| ribosome recycling factor [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|302649561|gb|EFL79743.1| ribosome recycling factor [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|306853772|gb|EFM85989.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar
1 str. 4074]
gi|306855909|gb|EFM88068.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar
2 str. S1536]
gi|306858193|gb|EFM90271.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar
4 str. M62]
gi|306860424|gb|EFM92438.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|306862684|gb|EFM94640.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar
9 str. CVJ13261]
gi|306867195|gb|EFM99051.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar
11 str. 56153]
gi|306869328|gb|EFN01123.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar
12 str. 1096]
gi|306871424|gb|EFN03148.1| Ribosome recycling factor [Actinobacillus pleuropneumoniae serovar
13 str. N273]
gi|322119901|gb|EFX91910.1| ribosome recycling factor [Actinobacillus ureae ATCC 25976]
Length = 185
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 131/181 (72%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I+KD + RME++++ ++++ + +RTGR+ P++LD I+VEYYGS L+ +A + D+
Sbjct: 3 NEIKKDTQDRMEKSLEALKSHISKIRTGRAQPSLLDGIQVEYYGSATPLRQLANVVAEDA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L + +D+S + ++EKAI++SDLG+ P++ G IR+ LP LT ERR++L K+V + E
Sbjct: 63 RTLAVNVFDRSLISAVEKAILTSDLGLNPSSAGATIRVPLPPLTEERRRDLIKIVKGEGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+GK+A+RN+RRDA + L K+K++SED + ++QK+TD Y+KK+D + KEKEL
Sbjct: 123 QGKIAIRNVRRDANDQIKALLKDKEISEDEERKAQDEIQKITDGYVKKVDEVLAAKEKEL 182
Query: 274 L 274
L
Sbjct: 183 L 183
>gi|397669854|ref|YP_006511389.1| ribosome recycling factor [Propionibacterium propionicum F0230a]
gi|395142795|gb|AFN46902.1| ribosome recycling factor [Propionibacterium propionicum F0230a]
Length = 185
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 129/183 (70%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ +EK+ ++RM++ +D R + +++RTGR++PAM +++ +YYG+P L+ +A N+PD
Sbjct: 3 ADVEKETQSRMQQAVDHAREDLSTIRTGRAHPAMFNRLNADYYGAPTPLQQLATFNSPDP 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
++LI P+D+S++ +IEK I +DLG+ P+NDG IR+ +PQLT ERRKE K+ +AE
Sbjct: 63 RTMLITPFDRSAIAAIEKVIREADLGVNPSNDGNSIRVVMPQLTEERRKEYIKLARAKAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+ ++AVRNIRR ++ A +KL+K+ ++SED + + T +Y++ ID + K KE EL
Sbjct: 123 DARIAVRNIRRHSIDALKKLEKKSEISEDELVRAEKAMDVTTRKYVEAIDELLKNKEAEL 182
Query: 274 LKV 276
+V
Sbjct: 183 SEV 185
>gi|366159383|ref|ZP_09459245.1| ribosome recycling factor [Escherichia sp. TW09308]
gi|432375096|ref|ZP_19618119.1| ribosome-recycling factor [Escherichia coli KTE11]
gi|430892354|gb|ELC14846.1| ribosome-recycling factor [Escherichia coli KTE11]
Length = 185
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 84/182 (46%), Positives = 128/182 (70%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S I KD + RM++ ++ +T + +RTGR++P++LD I VEYYG+P L+ +A + DS
Sbjct: 3 SDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDS 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L I +D+S ++EKAI++SDLG+ PN+ G IR+ LP LT ERRK+L+K+V +AE
Sbjct: 63 RTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+ +VAVRN+RRDA + L KEK++SED+ + D+QKLTD +KKI++ KE EL
Sbjct: 123 QARVAVRNVRRDANDKVKALLKEKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAEL 182
Query: 274 LK 275
++
Sbjct: 183 MQ 184
>gi|311280859|ref|YP_003943090.1| ribosome recycling factor [Enterobacter cloacae SCF1]
gi|308750054|gb|ADO49806.1| ribosome recycling factor [Enterobacter cloacae SCF1]
Length = 185
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 84/182 (46%), Positives = 128/182 (70%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S I KD + RME+ ++ +T + VRTGR++P++LD I VEYYG+P L+ +A + DS
Sbjct: 3 SDIRKDAEVRMEKCVEAFKTQISKVRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDS 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L I +D+S ++EKAI++SDLG+ P++ G IR+ LP LT ERRK+L+K+V +AE
Sbjct: 63 RTLKINVFDRSMSPAVEKAIMASDLGLNPSSAGTDIRVPLPPLTEERRKDLTKIVRGEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+ +VAVRN+RRDA + L KEK++SED+ + D+QK+TD +KK+D+ KE EL
Sbjct: 123 QARVAVRNVRRDANDKVKALLKEKEISEDDDRRSQDDVQKMTDAAIKKVDAALADKEAEL 182
Query: 274 LK 275
++
Sbjct: 183 MQ 184
>gi|15806522|ref|NP_295233.1| ribosome recycling factor [Deinococcus radiodurans R1]
gi|22001957|sp|Q9RU82.1|RRF_DEIRA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|6459273|gb|AAF11077.1|AE001995_2 ribosome recycling factor [Deinococcus radiodurans R1]
Length = 183
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/184 (44%), Positives = 129/184 (70%), Gaps = 3/184 (1%)
Query: 91 AEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINT 150
A+ SI+ D + +M + I+ N + +RTGR+NP +L KI V+YYGS + + +A I T
Sbjct: 2 ADMKSIQADTREKMNKAIEAFENNLSVLRTGRANPGILKKIVVDYYGSQMPIDQVASITT 61
Query: 151 PDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 210
PD +L+I P+D+ +L IEKAI SDLG+ PNN G+ I ++LP LT ERRK+L K
Sbjct: 62 PDPRTLVITPWDRGALNPIEKAIRDSDLGLNPNNKGDTIFISLPMLTEERRKDLVKNAKN 121
Query: 211 QAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKE 270
AE+ ++AVRN+R+ AL ++++K + L ED +K +D+QK+TDEY+ +++S++++KE
Sbjct: 122 YAEDARIAVRNLRKHAL---DEVKKVEGLGEDEIKRGEADVQKITDEYVARVESVFQKKE 178
Query: 271 KELL 274
+E+L
Sbjct: 179 QEIL 182
>gi|239617981|ref|YP_002941303.1| ribosome recycling factor [Kosmotoga olearia TBF 19.5.1]
gi|259494547|sp|C5CF34.1|RRF_KOSOT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|239506812|gb|ACR80299.1| ribosome recycling factor [Kosmotoga olearia TBF 19.5.1]
Length = 185
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/184 (42%), Positives = 139/184 (75%)
Query: 93 KSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPD 152
K+ + KD + RM+++ + + F+ +RTGR +PA+L++I+V+YYG P + +A IN +
Sbjct: 2 KNMLLKDAEERMKKSTEKISEEFSHMRTGRPSPAILEEIKVDYYGVPTPINQLATINVSE 61
Query: 153 SSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQA 212
SL+I+P++K+ L IEKAI++S+LG+TP NDG V+RL P T+E+R++ K+ + A
Sbjct: 62 DRSLIIRPWEKNMLSHIEKAILASNLGLTPINDGNVVRLNFPIPTTEQREKWVKLSKEIA 121
Query: 213 EEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKE 272
E+GK+AVRNIRRD LK ++++K K+++ED+++ +LQKLTD+Y++++D ++++K+KE
Sbjct: 122 EKGKIAVRNIRRDVLKEAKEMEKNKEMTEDDLRRFEEELQKLTDKYVEEMDKLFEKKKKE 181
Query: 273 LLKV 276
+++
Sbjct: 182 IMEF 185
>gi|167759673|ref|ZP_02431800.1| hypothetical protein CLOSCI_02032 [Clostridium scindens ATCC 35704]
gi|336422510|ref|ZP_08602654.1| ribosome-recycling factor [Lachnospiraceae bacterium 5_1_57FAA]
gi|167662704|gb|EDS06834.1| ribosome recycling factor [Clostridium scindens ATCC 35704]
gi|336008436|gb|EGN38454.1| ribosome-recycling factor [Lachnospiraceae bacterium 5_1_57FAA]
Length = 183
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 126/174 (72%), Gaps = 1/174 (0%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++T+ + ++ ++R GR+NP +L+KI V+YYG+P ++ + ++ P+ +LIQP++
Sbjct: 11 KMKKTMASLESDLATIRAGRANPNVLNKIMVDYYGTPTPIQQVGNVSVPEPRMILIQPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS +K+IEKAI +S+LG+ P NDG IRL P+LT ERRKEL K V K+ E KVA+RNI
Sbjct: 71 KSMVKAIEKAIQTSELGINPTNDGSAIRLVFPELTEERRKELVKDVKKKGEGAKVAIRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD A +KL K ++SED +KD+ +LQK+TD+++KK+D + K KE++ V
Sbjct: 131 RRDGNDALKKL-KGSEVSEDEIKDMEEELQKVTDKFVKKVDEAVEAKSKEVMTV 183
>gi|332532243|ref|ZP_08408124.1| ribosome recycling factor [Pseudoalteromonas haloplanktis ANT/505]
gi|332038341|gb|EGI74786.1| ribosome recycling factor [Pseudoalteromonas haloplanktis ANT/505]
Length = 185
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/183 (44%), Positives = 129/183 (70%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I+KD +ARM++++ + + + +RTGR++PA+LD I V YYG+P L +A + DS
Sbjct: 3 NDIQKDAQARMQKSVTALGSQLSKIRTGRAHPAILDGIMVSYYGAPTPLNQVANVTIEDS 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L I +DKS +++EKAI++SDLG+ P + G VIR+ LP LT ERRK+L K+V + E
Sbjct: 63 RTLAIGVFDKSLAQAVEKAIMASDLGLNPMSAGTVIRVPLPPLTEERRKDLIKIVRGEVE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
G+VA+RNIRRDA + L K+K++SED + +QKLTD+++K++D++ KE EL
Sbjct: 123 GGRVAIRNIRRDANGDVKGLLKDKEISEDEARQSDDAIQKLTDKFIKEMDTLLAAKEAEL 182
Query: 274 LKV 276
+++
Sbjct: 183 MEI 185
>gi|315918326|ref|ZP_07914566.1| ribosome recycling factor [Fusobacterium gonidiaformans ATCC 25563]
gi|313692201|gb|EFS29036.1| ribosome recycling factor [Fusobacterium gonidiaformans ATCC 25563]
Length = 189
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 129/176 (73%), Gaps = 2/176 (1%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++TI+ + F S+R GR++ AMLD I+VE YGS + L +A ++ P++ L+I P+D
Sbjct: 14 KMQKTIEATKEKFTSIRAGRASVAMLDNIKVEQYGSDMPLNQVATVSAPEARLLVIDPWD 73
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+ + IEKAI++++LGM PNNDG V+RL +P+LT++RRKE K+ K+AE GK+AVRNI
Sbjct: 74 KTMILKIEKAILAANLGMNPNNDGRVVRLVMPELTADRRKEYVKLAKKEAENGKIAVRNI 133
Query: 223 RRDALKAYEKLQKEKK--LSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
R+D A +K++K+K+ +SED +K +++Q LTD+ +K +D + +KEKE+ V
Sbjct: 134 RKDMNTALKKIEKDKESGMSEDELKRFEAEVQTLTDKTIKDLDDLLAKKEKEITTV 189
>gi|50119974|ref|YP_049141.1| ribosome recycling factor [Pectobacterium atrosepticum SCRI1043]
gi|60390249|sp|Q6D8E0.1|RRF_ERWCT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|49610500|emb|CAG73945.1| ribosome recycling factor [Pectobacterium atrosepticum SCRI1043]
Length = 185
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 127/182 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I KD + RM++ ++ + N +RTGR++P++LD I VEYYGS L+ +A + DS
Sbjct: 3 NEIRKDAETRMDKCVEAFKNQINRIRTGRASPSILDGIHVEYYGSATPLRQLANVVVEDS 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L I +D+S ++EKAI++SDLG+ P++ G VIR+ LP LT ERRK+L KVV +AE
Sbjct: 63 RTLAISVFDRSLSPAVEKAIMASDLGLNPSSAGTVIRVPLPPLTEERRKDLIKVVRGEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+G+++VRN+RRDA ++ L K+K +SED + D+QKLTD ++KK+D +KE EL
Sbjct: 123 QGRISVRNVRRDANDKFKALLKDKAISEDEERRAQDDVQKLTDNFIKKVDVALAEKEAEL 182
Query: 274 LK 275
++
Sbjct: 183 ME 184
>gi|326389448|ref|ZP_08211015.1| ribosome recycling factor [Thermoanaerobacter ethanolicus JW 200]
gi|345017715|ref|YP_004820068.1| ribosome-recycling factor [Thermoanaerobacter wiegelii Rt8.B1]
gi|325994453|gb|EGD52878.1| ribosome recycling factor [Thermoanaerobacter ethanolicus JW 200]
gi|344033058|gb|AEM78784.1| Ribosome-recycling factor [Thermoanaerobacter wiegelii Rt8.B1]
Length = 184
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 127/174 (72%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++++ +++ ++R GR+NPA+LD+I V+YYG+P L +A I P+ L++QP+D
Sbjct: 11 KMQKSLSVLKNELAAIRAGRANPALLDRIMVDYYGTPTPLNRLATITAPEPRVLVVQPWD 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
S + IEKAI SDLG+ P +DG+V+RL P+LT ERRKEL K+V K+AEE KVAVR I
Sbjct: 71 VSKISDIEKAIQKSDLGINPVSDGKVLRLVFPELTEERRKELVKLVHKKAEEAKVAVRQI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA A +K++K ++SED K ++QKLTD+Y+K+ID + KEKE++++
Sbjct: 131 RRDANDAVKKMEKNGEISEDERKKREEEIQKLTDKYIKEIDKAVEAKEKEIMEI 184
>gi|448821533|ref|YP_007414695.1| Ribosome-recycling factor [Lactobacillus plantarum ZJ316]
gi|448275030|gb|AGE39549.1| Ribosome-recycling factor [Lactobacillus plantarum ZJ316]
Length = 187
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/180 (45%), Positives = 123/180 (68%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I K+ + RM++ ++ ++R GR+N ++L++I +YYG+ L +A I P+
Sbjct: 7 ILKEAQERMKKAEAALKRELGNIRAGRANASLLNRISADYYGAQTPLNQMAAITVPEPRV 66
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L++ P+DKS+LK IEKAI++SDLG++P NDG IRL +PQLT ERRKEL+K V + E
Sbjct: 67 LMVTPFDKSALKEIEKAILASDLGISPANDGSAIRLVIPQLTEERRKELAKDVKAEGERA 126
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVAVRN+RRDA++A +K K+ + ++D + L QKLTD+ K +D+I KEKE+L+
Sbjct: 127 KVAVRNVRRDAMEALKKGHKDGQFTDDQLHQLEDQAQKLTDQAGKDVDAIVADKEKEILE 186
>gi|404258921|ref|ZP_10962238.1| ribosome-recycling factor [Gordonia namibiensis NBRC 108229]
gi|403402701|dbj|GAC00648.1| ribosome-recycling factor [Gordonia namibiensis NBRC 108229]
Length = 185
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/178 (44%), Positives = 121/178 (67%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + +ME+ +++ + + S+RTGR+NPAM +KI +EYYG+ + +A INTP+ ++I
Sbjct: 8 DAEEKMEKAVNVAKEDMGSIRTGRANPAMFNKINIEYYGAMTPVTQVASINTPEPRLVVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+PY+ SSL+ IE AI +SDLG+ P NDG +IR+ +PQLT ERR+EL K + E+ KVA
Sbjct: 68 KPYEASSLRDIETAIRNSDLGVNPTNDGTIIRIAIPQLTEERRRELVKQAKGKGEDAKVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RN+RR A +++QK+ + ED V +L K T Y+ ++D + K KE ELL+V
Sbjct: 128 IRNVRRKAADELKRIQKDGEAGEDEVTRAEKELDKTTATYVHQVDELVKHKEDELLEV 185
>gi|357420017|ref|YP_004933009.1| ribosome recycling factor [Thermovirga lienii DSM 17291]
gi|355397483|gb|AER66912.1| ribosome recycling factor [Thermovirga lienii DSM 17291]
Length = 185
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 123/168 (73%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
KD+K RME+ ++ ++ +RTGR++PA+++ I+VEYYGS V + +A ++ PD +L
Sbjct: 7 KDLKERMEKAVEHLKKELQGIRTGRAHPALVEDIKVEYYGSMVPISQMATVSIPDPRQIL 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I P+DK+++K IEKAI +S LG+ P DG+VIRL +P+LT ERR+ELSK+V K AE+ ++
Sbjct: 67 IAPWDKTAVKPIEKAIQASPLGINPQVDGDVIRLNIPELTGERRQELSKLVKKYAEDARI 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 265
AVRN+RR+ +K +K ++SED + D +QK+TDE++KKID +
Sbjct: 127 AVRNLRREGNDNIKKKEKSGEISEDQMHDYLERIQKITDEFIKKIDEL 174
>gi|347754098|ref|YP_004861662.1| ribosome recycling factor [Candidatus Chloracidobacterium
thermophilum B]
gi|347586616|gb|AEP11146.1| ribosome recycling factor [Candidatus Chloracidobacterium
thermophilum B]
Length = 186
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 87/181 (48%), Positives = 129/181 (71%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I K+ ARME T++ R F+S+RTGR++ +LD I+VE YG+ + L +A I+ P+++
Sbjct: 6 ILKEATARMETTLEDARRRFSSIRTGRASVNLLDGIQVESYGTVMPLNQLANISAPEAAL 65
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
+ IQP+D S L +IE+AI SSDLG+TP+NDG++IRL +P LT ERRK+L++ V AEE
Sbjct: 66 ITIQPWDTSLLGAIERAIQSSDLGITPSNDGKIIRLPIPPLTEERRKQLARTVRDTAEEH 125
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
+ +RNIRRDA + +KL KEK +SED K +QK TD + +K++ + K KE+EL++
Sbjct: 126 RAGLRNIRRDANEEVKKLLKEKLISEDEHKVALEQIQKQTDAFTQKLNDLAKAKEEELMR 185
Query: 276 V 276
V
Sbjct: 186 V 186
>gi|436842900|ref|YP_007327278.1| ribosome recycling factor [Desulfovibrio hydrothermalis AM13 = DSM
14728]
gi|432171806|emb|CCO25179.1| ribosome recycling factor [Desulfovibrio hydrothermalis AM13 = DSM
14728]
Length = 185
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/183 (44%), Positives = 128/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S + D K RME + + ++F +RTGR++ +++D+I V+YYG+P + +A ++ PDS
Sbjct: 3 SEVLADGKKRMEGALTSLESDFGKLRTGRASTSLVDQISVDYYGTPTPINQLASVSIPDS 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
++ IQP+DK + IEKA++ SDLG+ P NDG+++R+++P LT ERRKEL K+ K E
Sbjct: 63 RTVAIQPWDKGAFPLIEKALMLSDLGLNPVNDGKLLRISIPLLTEERRKELVKIAKKYTE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+ KVA+RN+RRD +KL+K+K++SED + D+QK+TD Y+KK D KEKE+
Sbjct: 123 DSKVALRNVRRDMNDTLKKLEKDKEISEDEQRKAQDDVQKMTDLYVKKCDEACNAKEKEI 182
Query: 274 LKV 276
L++
Sbjct: 183 LEI 185
>gi|269926622|ref|YP_003323245.1| ribosome recycling factor [Thermobaculum terrenum ATCC BAA-798]
gi|269790282|gb|ACZ42423.1| ribosome recycling factor [Thermobaculum terrenum ATCC BAA-798]
Length = 185
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/178 (44%), Positives = 126/178 (70%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + RM +ID+++ + ++R+GR+ P +++ IEVEYYG P L +A I+ P+ + I
Sbjct: 8 DAEKRMRHSIDVLKKDLANIRSGRATPGLVEHIEVEYYGVPTPLIQLASISVPEPRMIAI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
P+D +S+ IEKAI S+LG+ P+NDG++IR+ +P LT ERR+ L K+V ++ EE +VA
Sbjct: 68 TPWDPNSIGPIEKAIQKSELGLNPSNDGKIIRILVPPLTEERRRSLVKMVRQRVEEDRVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRD + +++Q EK +SED + LQ+LTD+Y+K+ DS+ +QKE+E+L V
Sbjct: 128 IRNIRRDVMNDIKQMQHEKMISEDEARRAQEKLQQLTDKYIKEADSLGEQKEQEILTV 185
>gi|451947681|ref|YP_007468276.1| ribosome recycling factor [Desulfocapsa sulfexigens DSM 10523]
gi|451907029|gb|AGF78623.1| ribosome recycling factor [Desulfocapsa sulfexigens DSM 10523]
Length = 184
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 128/174 (73%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+ME+++D + + VRTGR++ ++LD I V+ YGS + L +A + P++ + IQP+D
Sbjct: 11 KMEKSVDTFKNELSKVRTGRASISLLDGISVDAYGSQMPLNQVATMTIPENRMIAIQPWD 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
+ +IE+AI+ S+LG+ P NDG+VIRLT+PQLT ERRKEL K V K AE+ +VAVRN+
Sbjct: 71 PQMVPAIERAILKSNLGLAPQNDGKVIRLTIPQLTEERRKELVKQVRKVAEDFRVAVRNV 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RR+A+ A ++ +K+K++SED++ L D QK TD Y+K+ID + + KEKE++++
Sbjct: 131 RREAIDALKQQKKDKEISEDDLFKLQDDAQKETDTYVKQIDQVTEHKEKEMMEI 184
>gi|427405467|ref|ZP_18895672.1| ribosome recycling factor [Selenomonas sp. F0473]
gi|425708308|gb|EKU71347.1| ribosome recycling factor [Selenomonas sp. F0473]
Length = 185
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 125/173 (72%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M + I+ +R F+S+R GR+ P +LDK+ V YYG+P S+ +A++ P+ ++I P++K
Sbjct: 13 MNKAIEALRREFSSLRAGRATPNLLDKVMVPYYGTPTSVNQLAKVTVPEPHMIVITPWEK 72
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
S L IE AI SDLG++PN+DG VIRL +PQ T ERRKEL K V K+ E+ KVA+RNIR
Sbjct: 73 SVLHDIEIAISKSDLGLSPNSDGNVIRLAIPQPTQERRKELLKTVGKKTEDAKVALRNIR 132
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RDA +A +KL+K+K+++ED K +QKL D+++K+++ + KEKE++++
Sbjct: 133 RDANEAIKKLEKDKEINEDESKRGQESVQKLMDKFVKQMEEMRTAKEKEVMEI 185
>gi|291459117|ref|ZP_06598507.1| ribosome recycling factor [Oribacterium sp. oral taxon 078 str.
F0262]
gi|291418371|gb|EFE92090.1| ribosome recycling factor [Oribacterium sp. oral taxon 078 str.
F0262]
Length = 184
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 120/174 (68%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +T D + + ++R GR+NP +LD+I V+YYG+ L+ + I+ P++ L IQP+D
Sbjct: 11 KMHKTHDNLMSELATIRAGRANPHVLDRITVDYYGTQTPLQQVGNISVPEARMLQIQPWD 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K LK IEKAI SDLG+ P NDG IRL P+LT ERR+EL+K V K+ E KVA+RNI
Sbjct: 71 KGMLKEIEKAINLSDLGINPTNDGNTIRLVFPELTEERRRELTKEVKKKGEAAKVAIRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA++ +KL+K +++ED++ + D+Q LTD ++KID + K KEL+ V
Sbjct: 131 RRDAMELAKKLEKNSEITEDDLSRQTKDIQDLTDHMIEKIDRSVEAKNKELMTV 184
>gi|117921253|ref|YP_870445.1| ribosome recycling factor [Shewanella sp. ANA-3]
gi|166231228|sp|A0KZ20.1|RRF_SHESA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|117613585|gb|ABK49039.1| ribosome recycling factor [Shewanella sp. ANA-3]
Length = 185
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 127/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I+KD + RM + ++ + VRTGR++P++LD I+V YYG+ L +A + D+
Sbjct: 3 ADIKKDAQERMGKCVEATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGIEDA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L + +D+S+++++EKAI+SSDLG+ P + G +R+ LP LT ERRK+ KVV +AE
Sbjct: 63 RTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRAEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
G+VA+RN+RRDA+ +KL+K K+ +ED+V+ ++QK TD ++KK+D I KE EL
Sbjct: 123 GGRVAIRNVRRDAISEVKKLEKAKECTEDDVRRFEDEVQKFTDAHIKKVDEILAAKEIEL 182
Query: 274 LKV 276
++V
Sbjct: 183 MEV 185
>gi|373955776|ref|ZP_09615736.1| Ribosome-recycling factor [Mucilaginibacter paludis DSM 18603]
gi|373892376|gb|EHQ28273.1| Ribosome-recycling factor [Mucilaginibacter paludis DSM 18603]
Length = 187
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/178 (46%), Positives = 126/178 (70%), Gaps = 1/178 (0%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D KA ME+ I+ + F +R G+++PAMLD + VEYYG+P + +A +N+PD+ +L++
Sbjct: 11 DAKALMEKAIEHTDSEFLKIRAGKASPAMLDGVMVEYYGTPTIITQVASVNSPDARTLVV 70
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP++K+ L IE+AI+ ++LG P NDG VIR+ +P LT ERR++L K V +AE GK+A
Sbjct: 71 QPWEKTLLGPIERAIMEANLGFNPQNDGIVIRINVPPLTEERRRDLVKRVKAEAENGKIA 130
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIR+DA + +KL+ E +SED +K +D+QKL D Y+ KID + KEK+++ V
Sbjct: 131 LRNIRKDANEKIKKLKTE-SVSEDEIKVGEADVQKLVDAYIIKIDQLTDVKEKDIMTV 187
>gi|193215251|ref|YP_001996450.1| ribosome recycling factor [Chloroherpeton thalassium ATCC 35110]
gi|193088728|gb|ACF14003.1| ribosome recycling factor [Chloroherpeton thalassium ATCC 35110]
Length = 187
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 123/178 (69%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D ++RM+++I+ VR F ++RTG+++ +LD I+VE YG + LK + + T DS +L +
Sbjct: 10 DAESRMQKSIENVRHEFAAIRTGKASAGLLDGIKVEAYGQAMPLKQVGNVGTLDSRTLTV 69
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
Q +DK + ++EKAI S+LG+ P DG+ IR+ +P LT ERRKE KV KQAEEGKVA
Sbjct: 70 QVWDKGMVATVEKAIRDSNLGLNPATDGQTIRIPVPPLTEERRKEYVKVTKKQAEEGKVA 129
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRNIRRDA A +KL+KEK ++ED D+ LT +Y K +D + +KEKE+++V
Sbjct: 130 VRNIRRDANHAIDKLEKEKLITEDEKARAKKDIDNLTHKYEKSLDELTSKKEKEIMEV 187
>gi|336117154|ref|YP_004571921.1| ribosome-recycling factor [Microlunatus phosphovorus NM-1]
gi|334684933|dbj|BAK34518.1| ribosome-recycling factor [Microlunatus phosphovorus NM-1]
Length = 185
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 118/174 (67%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M+ ++ + F ++RTGR++PAM K+ EYYG+P L+ +A PD+ +LI PYD
Sbjct: 12 KMDSAVEYAKEEFAAIRTGRAHPAMFAKLTAEYYGAPTPLQQLASFQVPDARMVLISPYD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
+SS+ +IEK+I SDLG+ P+NDG VIR+TLPQLT ERRKE K+ +AEE ++++RN
Sbjct: 72 RSSMNAIEKSIRDSDLGVNPSNDGHVIRVTLPQLTEERRKEYIKLARHKAEEARISIRNH 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RR A A +KL K+K+ ED V L ++T Y+ +ID + K KE ELL+V
Sbjct: 132 RRWAKDALDKLVKDKEAGEDEVNRAEKQLDQITKTYVDQIDEVLKNKEAELLEV 185
>gi|408792609|ref|ZP_11204219.1| ribosome recycling factor [Leptospira meyeri serovar Hardjo str.
Went 5]
gi|408464019|gb|EKJ87744.1| ribosome recycling factor [Leptospira meyeri serovar Hardjo str.
Went 5]
Length = 183
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/178 (45%), Positives = 128/178 (71%), Gaps = 2/178 (1%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I K ++++M++T+D ++ +F ++RTG+++P M++ + V+YYG+ L + +I P+
Sbjct: 5 IIKSMQSKMDKTVDALKKDFGTIRTGKASPMMVEDVRVDYYGTLTPLNQLGKIACPEPRM 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
+LI P++K LK IEKAI ++ LG+TPNNDG IR+ +P+LT ERRKEL+KVV ++AEE
Sbjct: 65 ILITPFEKGMLKDIEKAIFAASLGLTPNNDGSSIRINIPELTGERRKELAKVVKQKAEEK 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
KVA+RNIRRDA +K Q E +S+D +K +QK+TD Y+ K+ + K+KEKE+
Sbjct: 125 KVAIRNIRRDANDELKKHQAE--MSQDELKGQQDKIQKITDSYIAKLGDLEKEKEKEI 180
>gi|423017271|ref|ZP_17007992.1| ribosome recycling factor [Achromobacter xylosoxidans AXX-A]
gi|338779720|gb|EGP44155.1| ribosome recycling factor [Achromobacter xylosoxidans AXX-A]
Length = 186
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/183 (44%), Positives = 127/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I K +ARM +++D ++TN +RTGR++ +LD ++VEYYGSPV + + +N D+
Sbjct: 4 AEIRKSAEARMAKSLDTLKTNLAKIRTGRAHTGILDHVQVEYYGSPVPISQVGNVNLIDA 63
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
++ +QPY+KS +IEKAI SDLG+ P + G+ IR+ +P LT ERR++L+KVV + E
Sbjct: 64 RTISVQPYEKSMAAAIEKAIRESDLGLNPMSLGDSIRVPMPALTEERRRDLTKVVRSEGE 123
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+ KVAVRN+RR+A +KL K+K++SED+ + D+QKLTD + ID + QKE E+
Sbjct: 124 DAKVAVRNLRREANDTLKKLVKDKEISEDDERRAQDDVQKLTDRNVADIDKMVTQKEAEI 183
Query: 274 LKV 276
+ V
Sbjct: 184 MTV 186
>gi|392940941|ref|ZP_10306585.1| ribosome recycling factor [Thermoanaerobacter siderophilus SR4]
gi|392292691|gb|EIW01135.1| ribosome recycling factor [Thermoanaerobacter siderophilus SR4]
Length = 184
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 127/174 (72%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++++ +++ ++R GR+NPA+LD+I V+YYG+P L +A I P+ L++QP+D
Sbjct: 11 KMQKSLSVLKNELAAIRAGRANPALLDRIMVDYYGTPTPLNRLATITAPEPRVLVVQPWD 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
S + IEKAI SDLG+ P +DG+V+RL P+LT ERRKEL K+V K+AEE KVAVR I
Sbjct: 71 VSKVSDIEKAIQKSDLGINPVSDGKVLRLVFPELTEERRKELVKLVHKKAEEAKVAVRQI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA A +K++K ++SED K ++QKLTD+Y+K+ID + KEKE++++
Sbjct: 131 RRDANDAVKKMEKNGEISEDERKKREEEIQKLTDKYIKEIDKAVEAKEKEIMEI 184
>gi|148265750|ref|YP_001232456.1| ribosome recycling factor [Geobacter uraniireducens Rf4]
gi|189044056|sp|A5G7W5.1|RRF_GEOUR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|146399250|gb|ABQ27883.1| ribosome recycling factor [Geobacter uraniireducens Rf4]
Length = 185
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 128/173 (73%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M++TID +R + VRTGR++ +LD+I+V++YG+P + +A + P+ ++ +QP+D
Sbjct: 13 MDKTIDALRKEYQRVRTGRASTGLLDEIKVDFYGTPSPINQVATLAVPEPRTITLQPWDA 72
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
+ IEKAI++++LG+TP NDG+VIRL +P LT ERRK++ K + K AE+ KVAVRNIR
Sbjct: 73 KMIPVIEKAIMNANLGLTPANDGKVIRLNIPPLTEERRKDIVKQLKKLAEDAKVAVRNIR 132
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RDA+ +K +K+KK+SED++K ++Q +T+ ++ KID ++ KEKE+++V
Sbjct: 133 RDAIDELKKQEKDKKISEDDLKRAEKEVQDVTNSHVAKIDEVFVHKEKEVMEV 185
>gi|116495065|ref|YP_806799.1| ribosome recycling factor [Lactobacillus casei ATCC 334]
gi|191638568|ref|YP_001987734.1| ribosome recycling factor [Lactobacillus casei BL23]
gi|227534923|ref|ZP_03964972.1| ribosome recycling factor [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|385820280|ref|YP_005856667.1| Ribosome recycling factor, RRF [Lactobacillus casei LC2W]
gi|385823477|ref|YP_005859819.1| Ribosome recycling factor, RRF [Lactobacillus casei BD-II]
gi|418005293|ref|ZP_12645288.1| ribosome recycling factor [Lactobacillus casei UW1]
gi|122263518|sp|Q038L5.1|RRF_LACC3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|238693049|sp|B3WES5.1|RRF_LACCB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|116105215|gb|ABJ70357.1| ribosome recycling factor [Lactobacillus casei ATCC 334]
gi|190712870|emb|CAQ66876.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Lactobacillus casei BL23]
gi|227187679|gb|EEI67746.1| ribosome recycling factor [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|327382607|gb|AEA54083.1| Ribosome recycling factor, RRF [Lactobacillus casei LC2W]
gi|327385804|gb|AEA57278.1| Ribosome recycling factor, RRF [Lactobacillus casei BD-II]
gi|410547222|gb|EKQ21459.1| ribosome recycling factor [Lactobacillus casei UW1]
Length = 185
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/176 (46%), Positives = 122/176 (69%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K M +T + ++ ++R GR+N ++L++I VEYYG+P L +A I P+ L + P
Sbjct: 10 KVNMGKTEESLQRELGNIRAGRANASLLNQITVEYYGAPTPLNQMAAITIPEPRVLQVSP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDKSSLK+IE A+ +SDLG+ P NDG+VIRL +PQLT ERRKE++K V K +E K+A+R
Sbjct: 70 YDKSSLKNIETALNASDLGINPANDGDVIRLVIPQLTGERRKEIAKEVGKYSESAKIAIR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRR+ L ++ +K+ ++ED++ L D+QK TD+ K+ID I KEKE+ +V
Sbjct: 130 NIRREGLDKLKRQEKDGDITEDDLHRLEKDMQKATDDATKRIDEIAAAKEKEITEV 185
>gi|365904178|ref|ZP_09441937.1| ribosome recycling factor [Lactobacillus versmoldensis KCTC 3814]
Length = 186
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 123/173 (71%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K M++TI+++ ++R G++N ++L ++VEYYG+ L +A IN P++ LL+ P
Sbjct: 11 KENMKKTIEVLNRELANIRAGKANASILSNVQVEYYGTMAPLNQVASINIPEARVLLVTP 70
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDKS+L +IE AI S+DLG+ P NDG+VIRL +PQLT ERR+E++K V K+AE+ +VAVR
Sbjct: 71 YDKSALDNIEHAINSADLGLNPANDGDVIRLVIPQLTGERRQEIAKKVGKEAEDARVAVR 130
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
N+RR+ + + +K K ++ED D+ +QK+TDE + K++ + + KEKE+
Sbjct: 131 NVRREGMDSIKKQLKNSDITEDGFHDIEDQIQKVTDEAIAKVNELAEAKEKEI 183
>gi|409391198|ref|ZP_11242890.1| ribosome-recycling factor [Gordonia rubripertincta NBRC 101908]
gi|403199011|dbj|GAB86124.1| ribosome-recycling factor [Gordonia rubripertincta NBRC 101908]
Length = 185
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/178 (44%), Positives = 121/178 (67%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + +ME+ +++ + + S+RTGR+NPAM +KI +EYYG+ + +A INTP+ ++I
Sbjct: 8 DAEEKMEKAVNVAKEDMGSIRTGRANPAMFNKINIEYYGAMTPVTQVASINTPEPRLVVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+PY+ S+L+ IE AI +SDLG+ P NDG +IR+ +PQLT ERR+EL K + E+ KVA
Sbjct: 68 KPYEASTLRDIETAIRNSDLGVNPTNDGTIIRIAIPQLTEERRRELVKQAKGKGEDAKVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RN+RR A +++QK+ + ED V +L K T Y+ +ID + K KE ELL+V
Sbjct: 128 IRNVRRKAADELKRIQKDGEAGEDEVTRAEKELDKTTATYVHQIDDLVKHKEDELLEV 185
>gi|254556881|ref|YP_003063298.1| ribosome recycling factor [Lactobacillus plantarum JDM1]
gi|300768196|ref|ZP_07078101.1| ribosome recycling factor [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|308180824|ref|YP_003924952.1| ribosome recycling factor [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|380032819|ref|YP_004889810.1| ribosome recycling factor [Lactobacillus plantarum WCFS1]
gi|418275563|ref|ZP_12890886.1| ribosome recycling factor [Lactobacillus plantarum subsp. plantarum
NC8]
gi|34924944|sp|Q88VJ7.1|RRF_LACPL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|254045808|gb|ACT62601.1| ribosome recycling factor [Lactobacillus plantarum JDM1]
gi|300494260|gb|EFK29423.1| ribosome recycling factor [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|308046315|gb|ADN98858.1| ribosome recycling factor [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|342242062|emb|CCC79296.1| ribosome recycling factor [Lactobacillus plantarum WCFS1]
gi|376009114|gb|EHS82443.1| ribosome recycling factor [Lactobacillus plantarum subsp. plantarum
NC8]
Length = 187
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/180 (45%), Positives = 123/180 (68%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I K+ + RM++ ++ ++R GR+N ++L++I +YYG+ L +A I P+
Sbjct: 7 ILKEAQERMKKAEAALQRELGNIRAGRANASLLNRISADYYGAQTPLNQMAAITVPEPRV 66
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L++ P+DKS+LK IEKAI++SDLG++P NDG IRL +PQLT ERRKEL+K V + E
Sbjct: 67 LMVTPFDKSALKEIEKAILASDLGISPANDGSAIRLVIPQLTEERRKELAKDVKAEGERA 126
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVAVRN+RRDA++A +K K+ + ++D + L QKLTD+ K +D+I KEKE+L+
Sbjct: 127 KVAVRNVRRDAMEALKKGHKDGQFTDDQLHQLEDQAQKLTDQAGKDVDAIVADKEKEILE 186
>gi|392949071|ref|ZP_10314666.1| Ribosome recycling factor [Lactobacillus pentosus KCA1]
gi|334880348|emb|CCB81074.1| ribosome-recycling factor (RRF) (Ribosome-releasi ng factor)
[Lactobacillus pentosus MP-10]
gi|339639046|emb|CCC18260.1| ribosome-recycling factor (RRF) (ribosome-releasing factor)
[Lactobacillus pentosus IG1]
gi|392435660|gb|EIW13589.1| Ribosome recycling factor [Lactobacillus pentosus KCA1]
Length = 187
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/180 (45%), Positives = 123/180 (68%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I K+ + RM++ ++ ++R GR+N ++L++I +YYG+ L +A I P+
Sbjct: 7 ILKEAQERMKKAEAALQRELGNIRAGRANASLLNRISADYYGAQTPLNQMAAITVPEPRV 66
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L++ P+DKS+LK IEKAI++SDLG++P NDG IRL +PQLT ERRKEL+K V + E
Sbjct: 67 LMVTPFDKSALKEIEKAILASDLGISPANDGSAIRLVIPQLTEERRKELAKDVKAEGERA 126
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVAVRN+RRDA++A +K K+ + ++D + L QKLTD+ K +D+I KEKE+L+
Sbjct: 127 KVAVRNVRRDAMEALKKGHKDGQFTDDQLHQLEDQAQKLTDQAGKDVDAIVADKEKEILE 186
>gi|291544887|emb|CBL17996.1| ribosome recycling factor [Ruminococcus champanellensis 18P13]
Length = 184
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 122/172 (70%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++ + + F S+R GR+NP +LDK+ V+YYG+P + +A + ++ LLIQP+D
Sbjct: 11 KMDKALQHLAAEFASIRAGRANPGILDKVTVDYYGTPTPVNQMAAVTVSEARILLIQPWD 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
S +K+I KA+++SD+G+TP +DG+VIRL PQLT +RRKE+ K + K +E KVAVRN+
Sbjct: 71 ASMIKAINKALLASDIGITPTDDGKVIRLVFPQLTEDRRKEICKSIKKYGDETKVAVRNV 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
RRD ++ ++ ++K +++ED +KD +Q +TD++ + DS+ KEKE++
Sbjct: 131 RRDTMEKFKAMKKNSEITEDELKDAEKKIQNITDKFCTQTDSMVSDKEKEVM 182
>gi|322390000|ref|ZP_08063539.1| ribosome recycling factor [Streptococcus parasanguinis ATCC 903]
gi|321143313|gb|EFX38752.1| ribosome recycling factor [Streptococcus parasanguinis ATCC 903]
Length = 185
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 121/176 (68%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K RM ++ + F ++R GR+N ++LD+I VEYYG L +A I P++ LLI P
Sbjct: 10 KERMTQSHQSLGREFGTIRAGRANASLLDRIFVEYYGVETPLNQLASITIPEARVLLITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
+DKSSLK IE +I + DLG+TP NDG VIRL +P LT E R++L+K V K E KVA+R
Sbjct: 70 FDKSSLKDIEHSINAFDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAIR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRRDA+ +K +K K+++ED +K L ++QK+TD+ +K +D + KEKEL++V
Sbjct: 130 NIRRDAMDEAKKQEKAKEITEDELKGLEKEIQKVTDDAVKHVDEMTAHKEKELMEV 185
>gi|359433353|ref|ZP_09223687.1| ribosome recycling factor [Pseudoalteromonas sp. BSi20652]
gi|359452326|ref|ZP_09241676.1| ribosome recycling factor [Pseudoalteromonas sp. BSi20495]
gi|414070552|ref|ZP_11406535.1| ribosome recycling factor [Pseudoalteromonas sp. Bsw20308]
gi|357920043|dbj|GAA59936.1| ribosome recycling factor [Pseudoalteromonas sp. BSi20652]
gi|358050577|dbj|GAA77925.1| ribosome recycling factor [Pseudoalteromonas sp. BSi20495]
gi|410807006|gb|EKS12989.1| ribosome recycling factor [Pseudoalteromonas sp. Bsw20308]
Length = 185
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/183 (44%), Positives = 128/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I+KD +ARM++++ + + + +RTGR++PA+LD I V YYG+P L +A + DS
Sbjct: 3 NDIQKDAQARMQKSVTALGSQLSKIRTGRAHPAILDGIMVSYYGAPTPLNQVANVTIEDS 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L I +DKS +++EKAI++SDLG+ P + G VIR+ LP LT ERRK+L K+V + E
Sbjct: 63 RTLAIGVFDKSLAQAVEKAIMASDLGLNPMSAGTVIRVPLPPLTEERRKDLIKIVRAEVE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
G+VA+RNIRRDA + L K+K +SED + +QKLTD+++K++D++ KE EL
Sbjct: 123 GGRVAIRNIRRDANGDVKALLKDKDISEDEARQSDDAIQKLTDKFIKEMDTLLAAKETEL 182
Query: 274 LKV 276
+++
Sbjct: 183 MEI 185
>gi|84498386|ref|ZP_00997183.1| ribosome recycling factor [Janibacter sp. HTCC2649]
gi|84381886|gb|EAP97769.1| ribosome recycling factor [Janibacter sp. HTCC2649]
Length = 185
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 122/174 (70%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++ +++ + NF ++RTGR++P+M +K+ V+YYG+P L+ +A TP++ ++LI P+D
Sbjct: 12 KMDKAVEVAKDNFAAIRTGRAHPSMFNKVIVDYYGAPTPLQQLASFQTPEARTILISPFD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K ++ +IEKA+ +DLG+ P+NDG +IR LPQLT ERRKE K+ QAE+ KVA+RN+
Sbjct: 72 KGAMNNIEKALRDADLGVNPSNDGNIIRCILPQLTEERRKEYIKMARGQAEDAKVAIRNV 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RR A ++ E+L K+ + ED DL+ T +Y+ ID + K KE ELL+V
Sbjct: 132 RRTAKESIERLVKDGDVGEDEGSRAEKDLESTTKKYVDTIDEVLKGKETELLEV 185
>gi|256419436|ref|YP_003120089.1| ribosome recycling factor [Chitinophaga pinensis DSM 2588]
gi|256034344|gb|ACU57888.1| ribosome recycling factor [Chitinophaga pinensis DSM 2588]
Length = 187
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/181 (44%), Positives = 123/181 (67%), Gaps = 1/181 (0%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I +D A M + I + + +R G++NP +LD I V+YYGSP L +A I D+ +
Sbjct: 8 IIEDATATMRKAIGHLESELTKIRAGKANPQILDGITVDYYGSPTPLAQVANITVADART 67
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L +QP++K+ L+ IE+AI++S++G+ P NDG +IR+ LP LT ERRKE K + E+
Sbjct: 68 LTVQPWEKNMLQPIERAIIASNIGINPQNDGIIIRMFLPPLTEERRKEFVKRALNEGEQA 127
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
K+A+RNIRRDA++ +KLQK+ LSED KD +D+Q LT++Y++ +D QKEKE++
Sbjct: 128 KIAIRNIRRDAIEGIKKLQKD-GLSEDTAKDAEADVQNLTNKYIELVDKHTAQKEKEIMV 186
Query: 276 V 276
+
Sbjct: 187 I 187
>gi|269123002|ref|YP_003305579.1| ribosome recycling factor [Streptobacillus moniliformis DSM 12112]
gi|268314328|gb|ACZ00702.1| ribosome recycling factor [Streptobacillus moniliformis DSM 12112]
Length = 185
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 124/174 (71%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+ME+T++ + F+ VR GR+N +M+D + V+YYG L + + P++ L+I P+D
Sbjct: 12 KMEKTLESTKVRFSHVRAGRANVSMVDGVLVDYYGQMSPLNQVGSVTAPEARLLVIDPWD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS + +IEKAI+++++G P+NDG +IRL +P+LT +RRKE KVV K+AEEGKVA RNI
Sbjct: 72 KSLIPAIEKAILAANIGFNPSNDGRIIRLVVPELTEDRRKEYVKVVKKEAEEGKVAARNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
R+D K++K+ +++ED++K + +QKLTDE +K ID + +KEKELL +
Sbjct: 132 RKDYNNKVRKMEKDSEITEDDLKHVEEKIQKLTDECIKHIDELLAKKEKELLSI 185
>gi|406936245|gb|EKD70019.1| hypothetical protein ACD_46C00671G0007 [uncultured bacterium]
Length = 184
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/181 (43%), Positives = 128/181 (70%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I KD +ARM ++ID +T +RTGR+NP++LD + V+YYGS + + +A I T D+ +
Sbjct: 4 IIKDAEARMRKSIDAFKTEITKLRTGRANPSILDHVRVDYYGSEMPINQVANITTTDART 63
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L I P++KS +K IEKAI++SDLG+ P G+VIR+ +P L ERR+EL KV+ +AE
Sbjct: 64 LTITPWEKSMVKVIEKAILNSDLGLNPATTGDVIRVPMPALNEERRRELIKVLRNEAEAA 123
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
+V++RN+RRDA ++L K K+++ED + ++ D+QK+TD+++ ++D + KE +L+
Sbjct: 124 RVSIRNVRRDANAELKELLKSKQITEDEERRMTDDVQKITDKFVTEVDQLTTTKETDLMA 183
Query: 276 V 276
V
Sbjct: 184 V 184
>gi|359440428|ref|ZP_09230348.1| ribosome recycling factor [Pseudoalteromonas sp. BSi20429]
gi|392533952|ref|ZP_10281089.1| ribosome releasing factor [Pseudoalteromonas arctica A 37-1-2]
gi|358037741|dbj|GAA66597.1| ribosome recycling factor [Pseudoalteromonas sp. BSi20429]
Length = 185
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/183 (44%), Positives = 128/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I+KD +ARM++++ + + + +RTGR++PA+LD I V YYG+P L +A + DS
Sbjct: 3 NDIQKDAQARMQKSVTALGSQLSKIRTGRAHPAILDGIMVSYYGAPTPLNQVANVTIEDS 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L I +DKS +++EKAI++SDLG+ P + G VIR+ LP LT ERRK+L K+V + E
Sbjct: 63 RTLAIGVFDKSLAQAVEKAIMASDLGLNPMSAGTVIRVPLPPLTEERRKDLIKIVRGEVE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
G+VA+RNIRRDA + L K+K +SED + +QKLTD+++K++D++ KE EL
Sbjct: 123 GGRVAIRNIRRDANGDVKGLLKDKDISEDEARQSDDAIQKLTDKFIKEMDTLLAAKETEL 182
Query: 274 LKV 276
+++
Sbjct: 183 MEI 185
>gi|225873898|ref|YP_002755357.1| ribosome recycling factor [Acidobacterium capsulatum ATCC 51196]
gi|225791980|gb|ACO32070.1| ribosome recycling factor [Acidobacterium capsulatum ATCC 51196]
Length = 195
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 124/177 (70%)
Query: 100 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQ 159
+K RM++ + +T S+RTGR++ MLD+I V+YYG+P L + Q+NTPD+ S+++Q
Sbjct: 19 LKTRMDKAVKDFQTQLTSLRTGRASVQMLDQIRVDYYGTPTPLNQVGQVNTPDAQSIVVQ 78
Query: 160 PYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAV 219
P+D S LK IE A+ +SDLG P NDG++IR+ +P +T ERR+E+ K + K EE + V
Sbjct: 79 PWDTSILKDIENALRTSDLGFNPQNDGKIIRIPVPPMTEERRREVVKHLNKVLEEHRTGV 138
Query: 220 RNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RNIRRD A +K K+K +SED K ++QKLTDE +K+++ I ++KE E+++V
Sbjct: 139 RNIRRDGNDAIKKAAKDKLISEDEEKRSLDEMQKLTDEEIKRMEEISRKKEAEIMQV 195
>gi|160880757|ref|YP_001559725.1| ribosome recycling factor [Clostridium phytofermentans ISDg]
gi|190360239|sp|A9KMX5.1|RRF_CLOPH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|160429423|gb|ABX42986.1| ribosome recycling factor [Clostridium phytofermentans ISDg]
Length = 184
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/179 (45%), Positives = 133/179 (74%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K + +M++++D ++ + +R GR+NP +LDK+ V+YYG+P +++++A ++ P++ +
Sbjct: 6 KPFEGKMQKSLDSLKEEYVGIRAGRANPHLLDKLRVDYYGTPSAIQAVANVSVPEARVIQ 65
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP++ +K IEKAI++SDLG+TP+NDG+VIRL P+LT ERRK+L K V K+AE KV
Sbjct: 66 IQPWEAKLIKEIEKAIIASDLGLTPSNDGKVIRLVFPELTEERRKDLVKDVKKKAENTKV 125
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
AVRN+RRDA A +KL K ++SED K + ++QK+TD+++ ++D + + K KE+L V
Sbjct: 126 AVRNVRRDANDAIKKLAKANEISEDEQKQIEDEIQKITDKFITEVDKVMEDKSKEILTV 184
>gi|308185743|ref|YP_003929874.1| ribosome recycling factor [Pantoea vagans C9-1]
gi|308056253|gb|ADO08425.1| Ribosome recycling factor [Pantoea vagans C9-1]
Length = 219
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/181 (45%), Positives = 129/181 (71%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I+KD RME+ ++ +T + VRTGR++P++LD I VEYYG+P L+ +A + DS
Sbjct: 37 NDIKKDADTRMEKCVEAFKTTISKVRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDS 96
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L I +D+S +++EKAI+ SDLG+ P++ G IR+ LP LT ERRK+L K+V +AE
Sbjct: 97 RTLKINVFDRSLSQAVEKAIMKSDLGLNPSSAGTDIRVPLPALTEERRKDLIKIVRGEAE 156
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+G+V+VRN+RRDA + L K+K++SED+ + ++QK+TD Y+KK+D+ +KE EL
Sbjct: 157 QGRVSVRNVRRDANDKIKALLKDKEISEDDERRAQDEVQKMTDAYIKKVDAALSEKETEL 216
Query: 274 L 274
+
Sbjct: 217 M 217
>gi|152978335|ref|YP_001343964.1| ribosome recycling factor [Actinobacillus succinogenes 130Z]
gi|171704207|sp|A6VM32.1|RRF_ACTSZ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|150840058|gb|ABR74029.1| ribosome recycling factor [Actinobacillus succinogenes 130Z]
Length = 185
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 77/181 (42%), Positives = 133/181 (73%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I+KD + RME++++ ++ + + +RTGR+ P++LD I+V+YYG+ L+ +A + D+
Sbjct: 3 NEIKKDAQDRMEKSLEALKGHISKIRTGRAQPSLLDAIQVDYYGAATPLRQLANVVAEDA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L + +D+S ++++EKAI++SDLG+ P++ G IR+ LP LT ERR++L+K+V + E
Sbjct: 63 RTLAVTVFDRSLIQAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLTKLVKAEGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+GKVAVRN+RRDA + + L K+K++SE+ + D+QKLTD ++KK+D + KEKEL
Sbjct: 123 QGKVAVRNVRRDANEKIKALLKDKEISENEQRKAEDDIQKLTDSFVKKVDEVLADKEKEL 182
Query: 274 L 274
+
Sbjct: 183 M 183
>gi|113970973|ref|YP_734766.1| ribosome recycling factor [Shewanella sp. MR-4]
gi|114048197|ref|YP_738747.1| ribosome recycling factor [Shewanella sp. MR-7]
gi|123130244|sp|Q0HGV8.1|RRF_SHESM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|123131225|sp|Q0HT65.1|RRF_SHESR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|113885657|gb|ABI39709.1| ribosome recycling factor [Shewanella sp. MR-4]
gi|113889639|gb|ABI43690.1| ribosome recycling factor [Shewanella sp. MR-7]
Length = 185
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 127/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I+KD + RM + ++ + VRTGR++P++LD I+V YYG+ L +A + D+
Sbjct: 3 ADIKKDAQERMGKCVEATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGIEDA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L + +D+S+++++EKAI+SSDLG+ P + G +R+ LP LT ERRK+ KVV +AE
Sbjct: 63 RTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRAEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
G+VA+RN+RRDA+ +KL+K K+ +ED+V+ ++QK TD ++KK+D I KE EL
Sbjct: 123 GGRVAIRNVRRDAISDVKKLEKAKECTEDDVRRFEDEVQKFTDAHIKKVDEILAAKEIEL 182
Query: 274 LKV 276
++V
Sbjct: 183 MEV 185
>gi|389872085|ref|YP_006379504.1| ribosome recycling factor [Advenella kashmirensis WT001]
gi|388537334|gb|AFK62522.1| ribosome recycling factor [Advenella kashmirensis WT001]
Length = 186
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 79/183 (43%), Positives = 128/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S ++K ++RM +++D ++TN + +RTGR++ +LD++ V+YYGS V + +A +N D+
Sbjct: 4 SELQKSAESRMNKSLDTLKTNLSKIRTGRAHAGILDQVNVDYYGSAVPVSQVAAVNVVDA 63
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L +QP++K IEKAI SDLG+ P GE IR+ +P LT ERR++L+KVV + E
Sbjct: 64 RTLSVQPWEKQMAGPIEKAIRESDLGLNPVGMGETIRVPMPALTEERRRDLAKVVKSEGE 123
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+ KVAVRN+RRDA ++KL K+K++SED+ + +QK+TD ++ +ID + QKE E+
Sbjct: 124 DAKVAVRNLRRDANDGFKKLLKDKEISEDDDRRAQDVIQKMTDRFVAEIDKVVTQKEAEI 183
Query: 274 LKV 276
+ V
Sbjct: 184 MTV 186
>gi|381152281|ref|ZP_09864150.1| ribosome recycling factor [Methylomicrobium album BG8]
gi|380884253|gb|EIC30130.1| ribosome recycling factor [Methylomicrobium album BG8]
Length = 185
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 81/181 (44%), Positives = 129/181 (71%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S I++D +RM ++I+ ++ F+ +RTGR++P++LD+I V YYG+ SL +A I D+
Sbjct: 3 SDIQQDAASRMGKSIEALKHEFSKIRTGRAHPSLLDQISVSYYGTDSSLSQVANIAVEDA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L I P++K+ + IEKAI+ SDLG+ P +G IR+ LP LT +RR+EL KVV ++AE
Sbjct: 63 RTLTITPWEKNMVPVIEKAILKSDLGLNPATNGMTIRIPLPPLTEQRRRELVKVVKQEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
G+VA+RNIRRDA A ++ KEK +SED+ + +QK+TD+Y+K+++ + + KE +L
Sbjct: 123 NGRVAIRNIRRDANNAIKEALKEKLISEDDARGAEEKIQKITDQYVKEVEKLLEAKEADL 182
Query: 274 L 274
L
Sbjct: 183 L 183
>gi|359425000|ref|ZP_09216104.1| ribosome-recycling factor [Gordonia amarae NBRC 15530]
gi|358239689|dbj|GAB05686.1| ribosome-recycling factor [Gordonia amarae NBRC 15530]
Length = 185
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 122/178 (68%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + +ME+ + + + + S+RTGR+NPAM +K+ +EYYG+ + +A INTP++ ++I
Sbjct: 8 DAEEKMEKAVGVAKDDMGSIRTGRANPAMFNKVHIEYYGALTPITQVASINTPEARLVVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+PY+ SSL+ IE AI +SDLG+ P NDG VIR+ +PQLT +RRK+L K + E+ KVA
Sbjct: 68 KPYEASSLRDIETAIRNSDLGVNPTNDGNVIRVAIPQLTEDRRKDLVKQAKGKGEDAKVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RN+RR A+ +++QK+ + ED V +L K T Y+ ++D + K KE ELL+V
Sbjct: 128 IRNVRRKAVDELKRIQKDGEAGEDEVVRAEKELDKTTASYVAQVDELVKHKENELLEV 185
>gi|423111373|ref|ZP_17099067.1| ribosome-recycling factor [Klebsiella oxytoca 10-5243]
gi|423112608|ref|ZP_17100299.1| ribosome-recycling factor [Klebsiella oxytoca 10-5245]
gi|376376572|gb|EHS89349.1| ribosome-recycling factor [Klebsiella oxytoca 10-5243]
gi|376390985|gb|EHT03667.1| ribosome-recycling factor [Klebsiella oxytoca 10-5245]
Length = 185
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 128/182 (70%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S I KD + RME+ ++ +T + +RTGR++P++LD I VEYYG+P L+ +A + DS
Sbjct: 3 SDIRKDAEVRMEKCVEAFKTQISKIRTGRASPSLLDGIIVEYYGTPTPLRQLASVTVEDS 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L I +D+S ++EKAI++SDLG+ P++ G IR+ LP LT ERRK+L+K+V +AE
Sbjct: 63 RTLKINVFDRSMSPAVEKAIMASDLGLNPSSAGSDIRVPLPPLTEERRKDLTKIVRGEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+ +VAVRN+RRDA + L KEK++SED+ + D+QK+TD +KK+D+ KE EL
Sbjct: 123 QARVAVRNVRRDANDKVKALLKEKEISEDDDRRSQEDVQKMTDAAIKKVDAALADKEAEL 182
Query: 274 LK 275
++
Sbjct: 183 MQ 184
>gi|359768025|ref|ZP_09271805.1| ribosome-recycling factor [Gordonia polyisoprenivorans NBRC 16320]
gi|378717527|ref|YP_005282416.1| ribosome-recycling factor Frr [Gordonia polyisoprenivorans VH2]
gi|359314602|dbj|GAB24638.1| ribosome-recycling factor [Gordonia polyisoprenivorans NBRC 16320]
gi|375752230|gb|AFA73050.1| ribosome-recycling factor Frr [Gordonia polyisoprenivorans VH2]
Length = 185
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 124/178 (69%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + +ME+ +++ R + S+RTGR+NPAM +K+ +EYYG+ + +A INTP+ ++I
Sbjct: 8 DAEEKMEKAVNVAREDMGSIRTGRANPAMFNKVVIEYYGAMTPITQVASINTPEPRLVVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+PY+ S+L+ IE AI +SDLG+ P NDG +IR+ +PQLT ERRK+L K + E+ KV+
Sbjct: 68 KPYEASTLRDIETAIRNSDLGVNPTNDGTLIRVAVPQLTEERRKDLVKQAKGKGEDAKVS 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RN+RR A++ +++QK+ + ED+V DL K T Y+ ++D + K KE ELL+V
Sbjct: 128 IRNVRRKAVEELKRIQKDGEAGEDDVVRAEKDLDKTTAGYVAQVDELVKHKESELLEV 185
>gi|405981535|ref|ZP_11039862.1| ribosome recycling factor [Actinomyces neuii BVS029A5]
gi|404392459|gb|EJZ87519.1| ribosome recycling factor [Actinomyces neuii BVS029A5]
Length = 185
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 75/178 (42%), Positives = 124/178 (69%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + RM++ + R F+++RTGR+N +M D I+V+YYG+P L+ +A N P++ ++++
Sbjct: 8 DCENRMKKALAFTREEFSNIRTGRANTSMFDSIQVDYYGAPTPLQQLASFNIPEARTVIV 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
P+DK ++ +I KAI SDLG+ P +DG++IR+TLP LT ERRKE K+ +AEEG++A
Sbjct: 68 NPFDKGAMDAIIKAIRESDLGVNPTDDGKIIRVTLPALTEERRKEYVKLAKTKAEEGRIA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VR IRR + ++++K+ ED+V+ DL+ LT Y++K+D + + KE+ELL +
Sbjct: 128 VRGIRRKGMDQLDEIKKDGDAGEDDVERAQKDLEGLTKTYVEKVDKVMEAKEEELLTI 185
>gi|374370896|ref|ZP_09628886.1| ribosome recycling factor [Cupriavidus basilensis OR16]
gi|373097559|gb|EHP38690.1| ribosome recycling factor [Cupriavidus basilensis OR16]
Length = 186
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 78/179 (43%), Positives = 129/179 (72%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K V+ +M++TI+ + + +RTGR++ +LD ++V+YYGSPV + +A + DS ++
Sbjct: 8 KSVEQKMQKTIEAFKADLAKIRTGRAHTGLLDHVQVDYYGSPVPISQVANVGLADSRTIS 67
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
+QP++K + +IEKAI +DLG+ P+ GE IR+ +P LT ERRKEL+KVV +AE K+
Sbjct: 68 VQPWEKKMVSAIEKAIRDADLGLNPSTMGETIRVPMPMLTEERRKELAKVVKGEAEGAKI 127
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
AVRN+RRDA + ++KL K+K +SED+ + ++QKLTD+++ +ID + +K+KE++ V
Sbjct: 128 AVRNLRRDANEQFKKLVKDKAISEDDERRGQDEVQKLTDKFVAEIDRMVAEKDKEIMTV 186
>gi|295100640|emb|CBK98185.1| ribosome recycling factor [Faecalibacterium prausnitzii L2-6]
Length = 184
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 79/183 (43%), Positives = 128/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
SS K + +M+ ++ + +VR GR+NP +LDK+ V+YYGSP ++ +A + ++
Sbjct: 2 SSNTKAFEDKMKSAVEHLERELKTVRAGRANPGVLDKVTVDYYGSPTPIQQVASVAVSEA 61
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L I P+D++ L++I KAI++SD+G+ P +DG+ IRL P T ERRK+L+K V+K E
Sbjct: 62 RTLTITPWDRTLLRAISKAILASDVGINPIDDGQTIRLNFPAPTEERRKQLAKEVSKMGE 121
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
E KVAVRN+RRDA+ + ++K +L+ED K + D+QKLTD+Y+K ID+ ++K+KE+
Sbjct: 122 EAKVAVRNVRRDAMDKAKAMKKAGELTEDTQKTMEEDVQKLTDKYVKNIDAAVEEKQKEI 181
Query: 274 LKV 276
+ V
Sbjct: 182 MSV 184
>gi|350427675|ref|XP_003494840.1| PREDICTED: ribosome-recycling factor-like [Bombus impatiens]
Length = 185
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 83/179 (46%), Positives = 129/179 (72%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I+KD + RME++++ + + +RTGR++P++LD I VEYYGS L+ +A + DS +
Sbjct: 5 IQKDAEVRMEKSLESFQHHIAKIRTGRASPSLLDGISVEYYGSATPLRQVANVVAEDSRT 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L I +DKS ++ +EKAI++SDLG+ P + G VIR+ LP LT ERR++L+K+V +AE+G
Sbjct: 65 LAITVFDKSLIQVVEKAILTSDLGLNPASAGTVIRVPLPPLTEERRRDLTKIVRNEAEQG 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
+V++RNIRRDA + L K+K++SED+ + +QKLTD +KK+D+I KEKEL+
Sbjct: 125 RVSIRNIRRDANDQVKALLKDKQISEDDDRRSQDIIQKLTDSAIKKLDTILADKEKELM 183
>gi|153853432|ref|ZP_01994841.1| hypothetical protein DORLON_00830 [Dorea longicatena DSM 13814]
gi|149754218|gb|EDM64149.1| ribosome recycling factor [Dorea longicatena DSM 13814]
Length = 183
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 125/174 (71%), Gaps = 1/174 (0%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M++TI + +++R GR+NP +L+KI V+YYG+P ++ +A ++ P++ + IQP++
Sbjct: 11 KMKKTIGNLDGELSAIRAGRANPNVLNKIMVDYYGTPTPIQQVANVSVPEARMIQIQPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K ++ IEKAI++SDLG+ P NDG +RL P+LT +RRKEL K V K+ E KVA+RNI
Sbjct: 71 KKMVREIEKAIMTSDLGINPTNDGTTVRLLFPELTEDRRKELVKDVKKKGEAAKVAIRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD + + +KL K +SED +KD+ DLQKLTD+Y+K++D + K KE++ V
Sbjct: 131 RRDGIDSVKKL-KGSDVSEDEMKDMEDDLQKLTDKYVKEVDKAVEAKSKEVMTV 183
>gi|256851266|ref|ZP_05556655.1| ribosome recycling factor [Lactobacillus jensenii 27-2-CHN]
gi|260660690|ref|ZP_05861605.1| ribosome recycling factor [Lactobacillus jensenii 115-3-CHN]
gi|297206133|ref|ZP_06923528.1| ribosome recycling factor [Lactobacillus jensenii JV-V16]
gi|256616328|gb|EEU21516.1| ribosome recycling factor [Lactobacillus jensenii 27-2-CHN]
gi|260548412|gb|EEX24387.1| ribosome recycling factor [Lactobacillus jensenii 115-3-CHN]
gi|297149259|gb|EFH29557.1| ribosome recycling factor [Lactobacillus jensenii JV-V16]
Length = 185
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 125/175 (71%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K M+++I + + ++R G +N ++L+ ++V+YYG P L ++ + P++ LL+ P
Sbjct: 10 KENMDKSIAVYQKELGNIRAGVANASLLEGVKVDYYGVPTPLTQMSSVTIPEARVLLVTP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDKSSL +IE A+++SDLG+TP NDG VIRL +PQLT ERR+E++K V KQAE+ K+A+R
Sbjct: 70 YDKSSLDNIEHALLASDLGLTPANDGNVIRLVIPQLTGERREEIAKQVGKQAEQAKIAIR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
N+RR+A+ + +K +K ++ED K L D+QK+TD+ K++D + +K KE+ K
Sbjct: 130 NVRREAMDSLKKQEKNGDITEDEQKRLEKDVQKVTDDATKRVDQLADEKRKEITK 184
>gi|254360757|ref|ZP_04976905.1| peptide chain release factor RF4 [Mannheimia haemolytica PHL213]
gi|261491693|ref|ZP_05988274.1| peptide chain release factor RF4 [Mannheimia haemolytica serotype
A2 str. BOVINE]
gi|261494456|ref|ZP_05990942.1| peptide chain release factor RF4 [Mannheimia haemolytica serotype
A2 str. OVINE]
gi|452744334|ref|ZP_21944180.1| ribosome recycling factor [Mannheimia haemolytica serotype 6 str.
H23]
gi|153091327|gb|EDN73301.1| peptide chain release factor RF4 [Mannheimia haemolytica PHL213]
gi|261309840|gb|EEY11057.1| peptide chain release factor RF4 [Mannheimia haemolytica serotype
A2 str. OVINE]
gi|261312646|gb|EEY13768.1| peptide chain release factor RF4 [Mannheimia haemolytica serotype
A2 str. BOVINE]
gi|452087579|gb|EME03956.1| ribosome recycling factor [Mannheimia haemolytica serotype 6 str.
H23]
Length = 185
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 79/181 (43%), Positives = 128/181 (70%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I+KD + RME++++ ++ + +RTGR+ P++LD I+VEYYGS L+ +A + D+
Sbjct: 3 NEIKKDTQDRMEKSLEALKGHIAKIRTGRAQPSLLDGIQVEYYGSATPLRQVANVVAEDA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L + +DKS + ++EKAI++SDLG+ P++ G IR+ LP LT ERR++L K+V + E
Sbjct: 63 RTLAVNVFDKSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKAEGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+GKVA+RN+RRDA + L K+K++SE+ D+QK+TD ++KK+D + KEKEL
Sbjct: 123 QGKVAIRNVRRDANDQIKALLKDKEISENEQHKAEEDIQKITDTFIKKVDEVLAAKEKEL 182
Query: 274 L 274
L
Sbjct: 183 L 183
>gi|188586056|ref|YP_001917601.1| ribosome recycling factor [Natranaerobius thermophilus JW/NM-WN-LF]
gi|229564261|sp|B2A383.1|RRF_NATTJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|179350743|gb|ACB85013.1| ribosome recycling factor [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 184
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 87/179 (48%), Positives = 131/179 (73%)
Query: 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
SI KD + +M++ + +++ S+R GR+NP++L+ I V+YYG L +A I+ P+
Sbjct: 3 SIFKDAEQKMKKALSSLKSELASLRAGRANPSILEGINVDYYGMATPLNQLANISAPEPR 62
Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
L++QPYDKS+++ IEKAI+ SD+G+TPNNDG+VIRL +PQLT ERR EL K+V ++ E+
Sbjct: 63 LLVVQPYDKSAIEDIEKAILKSDVGLTPNNDGQVIRLAVPQLTEERRNELVKIVRQKGED 122
Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
KV VRN+RRDA +KL+KEK++SED ++QK+TD+Y+KKID + KE+E+
Sbjct: 123 TKVVVRNVRRDANDELKKLEKEKEISEDESIRGQDEIQKITDKYIKKIDEVMNAKEEEI 181
>gi|289208668|ref|YP_003460734.1| ribosome recycling factor [Thioalkalivibrio sp. K90mix]
gi|288944299|gb|ADC71998.1| ribosome recycling factor [Thioalkalivibrio sp. K90mix]
Length = 185
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 126/179 (70%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
KD + RM+++I+ +R +RTGR++P++L+ + V+YYG V + +A IN DS +L
Sbjct: 7 KDARQRMDKSIEALRNELAKIRTGRAHPSLLEHVHVDYYGMEVPINQVANINAEDSRTLA 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
+ PY+K + +EKAI++SDLG+ P + G VIR+ LP LT ERR++L KVV +AE +V
Sbjct: 67 VVPYEKDMVAKVEKAIMTSDLGLNPASMGTVIRVPLPALTEERRRDLVKVVRAEAENARV 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
AVRNIRRDA +++ K+K++SED + +QKLTD+++ KID++ + KE EL++V
Sbjct: 127 AVRNIRRDANNTFKQAVKDKEVSEDEERKAQEQVQKLTDDHIAKIDALLEDKEAELMEV 185
>gi|28198252|ref|NP_778566.1| ribosome recycling factor [Xylella fastidiosa Temecula1]
gi|386084410|ref|YP_006000692.1| ribosome recycling factor [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|417558397|ref|ZP_12209376.1| Ribosome recycling factor Frr [Xylella fastidiosa EB92.1]
gi|32129996|sp|Q87EH6.1|RRF_XYLFT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|28056322|gb|AAO28215.1| ribosome recycling factor [Xylella fastidiosa Temecula1]
gi|307579357|gb|ADN63326.1| ribosome recycling factor [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|338179014|gb|EGO81981.1| Ribosome recycling factor Frr [Xylella fastidiosa EB92.1]
Length = 185
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 85/181 (46%), Positives = 128/181 (70%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I++D + RM ++ID +R + SVRTGR++P++LD I+++ YG+ L +A I+ + S
Sbjct: 5 IKQDAQDRMTKSIDALRNSLASVRTGRASPSLLDGIKIKAYGTDTPLNQVASISVSEGRS 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L+I +DK+ K +EKAI +SDLG+TP G +IRL LP LT ERRKEL+KVV + E+
Sbjct: 65 LVITVFDKNMSKDVEKAIYASDLGLTPTVVGTLIRLNLPPLTEERRKELTKVVHSEGEDT 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVA+RNIRRDA + + + K K+++ED V+ D+QKLTD+ +K +D + K KE+EL+
Sbjct: 125 KVAIRNIRRDANQQIKDMLKSKEITEDEVRHGEEDIQKLTDKAIKSVDEVVKSKEQELMT 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|333983345|ref|YP_004512555.1| Ribosome-recycling factor [Methylomonas methanica MC09]
gi|333807386|gb|AEG00056.1| Ribosome-recycling factor [Methylomonas methanica MC09]
Length = 185
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 81/181 (44%), Positives = 128/181 (70%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
S I++D ARM ++I+ ++ F +RTGR++P++LD+I V YYGS L +A ++ D+
Sbjct: 3 SDIQQDAAARMAKSIEALQKAFTKIRTGRAHPSLLDQISVSYYGSESQLSQVANVSVEDA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
+L + P++K +++IEKAI+SS LG+ P G VIR+ LP LT ERR++L KVV +AE
Sbjct: 63 RTLKVVPWEKGMVQAIEKAILSSGLGLNPATQGTVIRIPLPALTEERRRDLVKVVKSEAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+G+V++RNIRRDA A + KEK +SED+ + +QKLTD+Y+K+++ ++KE +L
Sbjct: 123 QGRVSIRNIRRDANAAIKDALKEKLISEDDARQGEDKIQKLTDQYIKEVEKHLEEKEADL 182
Query: 274 L 274
L
Sbjct: 183 L 183
>gi|315924376|ref|ZP_07920598.1| ribosome recycling factor [Pseudoramibacter alactolyticus ATCC
23263]
gi|315622255|gb|EFV02214.1| ribosome recycling factor [Pseudoramibacter alactolyticus ATCC
23263]
Length = 185
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 126/174 (72%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M + ++ + + N++R GR+N +LDK+ V+YYG+P ++ +A + P++ + +QPYD
Sbjct: 12 KMNKALENLSGSLNTLRAGRANAHILDKVTVDYYGAPTAINQLATVAAPEARLITVQPYD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
++L +IEKAI+++DLG P+NDG++IRL +PQLT ERRKEL K+ K EE KVA+RNI
Sbjct: 72 TTALPAIEKAILTADLGFNPSNDGKIIRLAVPQLTEERRKELVKLTKKYGEECKVAMRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RR + + + QK+ +SED + D + +QKLTD+ +K+ID++ K KE+E+L V
Sbjct: 132 RRKSDQKLKTAQKDGDISEDEMHDGQNSVQKLTDKKIKEIDAVLKAKEEEILAV 185
>gi|146318980|ref|YP_001198692.1| ribosome recycling factor [Streptococcus suis 05ZYH33]
gi|146321189|ref|YP_001200900.1| ribosome recycling factor [Streptococcus suis 98HAH33]
gi|253752048|ref|YP_003025189.1| ribosome recycling factor [Streptococcus suis SC84]
gi|253753873|ref|YP_003027014.1| ribosome recycling factor [Streptococcus suis P1/7]
gi|253755251|ref|YP_003028391.1| ribosome recycling factor [Streptococcus suis BM407]
gi|302024058|ref|ZP_07249269.1| ribosome recycling factor [Streptococcus suis 05HAS68]
gi|330832480|ref|YP_004401305.1| ribosome recycling factor [Streptococcus suis ST3]
gi|386580224|ref|YP_006076629.1| ribosome recycling factor [Streptococcus suis JS14]
gi|386582246|ref|YP_006078650.1| ribosome recycling factor [Streptococcus suis SS12]
gi|386585794|ref|YP_006082196.1| ribosome recycling factor [Streptococcus suis D12]
gi|386588432|ref|YP_006084833.1| ribosome recycling factor [Streptococcus suis A7]
gi|389856298|ref|YP_006358541.1| ribosome recycling factor [Streptococcus suis ST1]
gi|403061804|ref|YP_006650020.1| ribosome recycling factor [Streptococcus suis S735]
gi|166231519|sp|A4W2B1.1|RRF_STRS2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|166231521|sp|A4VW03.1|RRF_STRSY RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|145689786|gb|ABP90292.1| Ribosome recycling factor [Streptococcus suis 05ZYH33]
gi|145691995|gb|ABP92500.1| Ribosome recycling factor [Streptococcus suis 98HAH33]
gi|251816337|emb|CAZ51968.1| ribosome recycling factor [Streptococcus suis SC84]
gi|251817715|emb|CAZ55464.1| ribosome recycling factor [Streptococcus suis BM407]
gi|251820119|emb|CAR46427.1| ribosome recycling factor [Streptococcus suis P1/7]
gi|319758416|gb|ADV70358.1| ribosome recycling factor [Streptococcus suis JS14]
gi|329306703|gb|AEB81119.1| ribosome recycling factor [Streptococcus suis ST3]
gi|353734392|gb|AER15402.1| ribosome recycling factor [Streptococcus suis SS12]
gi|353737940|gb|AER18948.1| ribosome recycling factor [Streptococcus suis D12]
gi|353740016|gb|AER21023.1| ribosome recycling factor [Streptococcus suis ST1]
gi|354985593|gb|AER44491.1| ribosome recycling factor [Streptococcus suis A7]
gi|402809130|gb|AFR00622.1| ribosome recycling factor [Streptococcus suis S735]
Length = 185
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 122/174 (70%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM ++ + F+ +R GR+N ++LD+I VEYYGSP L +A I P++ LLI P+D
Sbjct: 12 RMNQSHQSLAREFSHIRAGRANASLLDRISVEYYGSPTPLNQLAGITVPEARVLLITPFD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS LK IE+A+ +SDLG+TP +DG VIRL +P LT E RK L+K V K E KVA+RNI
Sbjct: 72 KSILKDIERALNASDLGLTPQSDGTVIRLVIPALTEETRKNLAKDVKKVGENSKVAIRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKELL+V
Sbjct: 132 RRDAMDEAKKAEKAKEITEDELKTLEKDIQKVTDDAIKTIDKMTADKEKELLEV 185
>gi|15837653|ref|NP_298341.1| ribosome recycling factor [Xylella fastidiosa 9a5c]
gi|22001954|sp|Q9PEH7.1|RRF_XYLFA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|9105995|gb|AAF83861.1|AE003942_5 ribosome recycling factor [Xylella fastidiosa 9a5c]
Length = 185
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 85/181 (46%), Positives = 128/181 (70%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I++D + RM ++ID +R + SVRTGR++P++LD I+++ YG+ L +A I+ + S
Sbjct: 5 IKQDAQDRMTKSIDALRNSLASVRTGRASPSLLDGIKIKAYGTDTPLNQVASISVSEGRS 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L+I +DK+ K +EKAI +SDLG+TP G +IRL LP LT ERRKEL+KVV + E+
Sbjct: 65 LVITVFDKNMSKDVEKAIYASDLGLTPTVVGTLIRLNLPPLTEERRKELTKVVHSEGEDT 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVA+RNIRRDA + + + K K+++ED V+ D+QKLTD+ +K +D + K KE+EL+
Sbjct: 125 KVAIRNIRRDANQQIKDMLKSKEITEDEVRQGEEDIQKLTDKAIKSVDEVVKSKEQELMT 184
Query: 276 V 276
V
Sbjct: 185 V 185
>gi|423350176|ref|ZP_17327829.1| ribosome-recycling factor [Turicella otitidis ATCC 51513]
gi|404387847|gb|EJZ82942.1| ribosome-recycling factor [Turicella otitidis ATCC 51513]
Length = 184
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 119/178 (66%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + RM T++ R + ++RTGR+NPAM + + EYYG+ + +A I+ P+ LLI
Sbjct: 7 DCEERMSNTVEHTREDLTTIRTGRANPAMFNGVTAEYYGAETPITQMASISVPEPRMLLI 66
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+PY+ S + +IE AI +SDLG+ P NDG V+R+T+PQLT ERRKE+ K+ + E+GK+A
Sbjct: 67 KPYEPSIMDAIETAIRNSDLGVNPTNDGHVLRVTVPQLTEERRKEMVKLARSKGEDGKIA 126
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRNIRR ++ +KLQK+ ED VK +L+K T Y++ ID + KE EL++V
Sbjct: 127 VRNIRRKGMEQLKKLQKDGDAGEDEVKASEGELEKTTATYVENIDKLVSAKENELMEV 184
>gi|326798845|ref|YP_004316664.1| ribosome-recycling factor [Sphingobacterium sp. 21]
gi|326549609|gb|ADZ77994.1| Ribosome-recycling factor [Sphingobacterium sp. 21]
Length = 187
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 123/179 (68%), Gaps = 1/179 (0%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
+D M++ I + +R G++ P+MLD I V+YYG+P L + INTPD SL+
Sbjct: 10 EDANDSMQKAISHTESELTKIRAGKAMPSMLDGINVDYYGTPTPLSQVGNINTPDPRSLV 69
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP++K+ L +IE+AI+ S++G+ P NDG +IRL +P LT ERR+EL + V ++AE+GKV
Sbjct: 70 IQPWEKNLLSAIERAIIDSNIGLNPQNDGNIIRLAVPPLTEERRRELVRKVKEEAEKGKV 129
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RNIR+DA +KL K +SED +K ++QKLTD ++ K+D + + KEK+++ V
Sbjct: 130 AIRNIRKDANDGIKKL-KNDGVSEDEIKVGEGEVQKLTDNFIAKVDKLAEAKEKDIMTV 187
>gi|417089786|ref|ZP_11955700.1| ribosome recycling factor [Streptococcus suis R61]
gi|353533915|gb|EHC03554.1| ribosome recycling factor [Streptococcus suis R61]
Length = 185
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 121/174 (69%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM ++ + F +R GR+N ++LD+I VEYYGSP L +A I P++ LLI P+D
Sbjct: 12 RMNQSHQSLAREFGHIRAGRANASLLDRISVEYYGSPTPLNQLAGITVPEARVLLITPFD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS LK IE+A+ +SDLG+TP +DG VIRL +P LT E RK L+K V K E KVA+RNI
Sbjct: 72 KSILKDIERALNASDLGLTPQSDGTVIRLVIPALTEETRKNLAKDVKKVGENSKVAIRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKELL+V
Sbjct: 132 RRDAMDEAKKAEKAKEITEDELKTLEKDIQKVTDDAIKTIDKMTADKEKELLEV 185
>gi|323484222|ref|ZP_08089591.1| hypothetical protein HMPREF9474_01342 [Clostridium symbiosum
WAL-14163]
gi|323692104|ref|ZP_08106351.1| ribosome recycling factor [Clostridium symbiosum WAL-14673]
gi|355627695|ref|ZP_09049382.1| ribosome-recycling factor [Clostridium sp. 7_3_54FAA]
gi|323402464|gb|EGA94793.1| hypothetical protein HMPREF9474_01342 [Clostridium symbiosum
WAL-14163]
gi|323503904|gb|EGB19719.1| ribosome recycling factor [Clostridium symbiosum WAL-14673]
gi|354820160|gb|EHF04584.1| ribosome-recycling factor [Clostridium sp. 7_3_54FAA]
Length = 184
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 125/174 (71%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M ++ +++ + S+R GR+NP +LDK+ V+YYG+P L+ +A ++ P+ +LIQP++
Sbjct: 11 KMVKSYEVLLDEYASIRAGRANPHVLDKLRVDYYGTPTPLQQVANVSVPEPRMILIQPWE 70
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
+ +K IEKAI++SDLG+ PNNDG IRL P+LT ERRKEL+K V K+ E KVAVRNI
Sbjct: 71 RKLIKDIEKAILTSDLGINPNNDGNAIRLVFPELTEERRKELAKDVKKKGEGVKVAVRNI 130
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA A +K++K ++SED+ + +QK+TD+ ++KID + K KE++ V
Sbjct: 131 RRDANDAIKKMEKAGEISEDDQAEGEEKIQKITDKMIEKIDKAVEAKTKEIMTV 184
>gi|223933844|ref|ZP_03625811.1| ribosome recycling factor [Streptococcus suis 89/1591]
gi|386583740|ref|YP_006080143.1| ribosome recycling factor [Streptococcus suis D9]
gi|223897495|gb|EEF63889.1| ribosome recycling factor [Streptococcus suis 89/1591]
gi|353735886|gb|AER16895.1| ribosome recycling factor [Streptococcus suis D9]
Length = 185
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 122/174 (70%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM ++ + F+ +R GR+N ++LD+I VEYYGSP L +A I P++ LLI P+D
Sbjct: 12 RMNQSHQSLAREFSHIRAGRANASLLDRISVEYYGSPTPLNQLAGITVPEARVLLITPFD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS LK IE+A+ +SDLG+TP +DG VIRL +P LT E RK L+K V K E KVA+RNI
Sbjct: 72 KSILKDIERALNASDLGLTPQSDGTVIRLVIPALTEETRKNLAKDVKKVGENSKVAIRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA+ +K +K K+++ED +K L D+QK+TD+ +K ID + KEKELL+V
Sbjct: 132 RRDAMDEAKKAEKAKEITEDELKTLEKDIQKVTDDAIKTIDKMTADKEKELLEV 185
>gi|167752630|ref|ZP_02424757.1| hypothetical protein ALIPUT_00885 [Alistipes putredinis DSM 17216]
gi|167659699|gb|EDS03829.1| ribosome recycling factor [Alistipes putredinis DSM 17216]
Length = 185
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 128/174 (73%), Gaps = 1/174 (0%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM++TI+ + ++R G+++P +L+ + V+YYGS + +A + PD+ ++LIQP+D
Sbjct: 13 RMQKTIEHLEEELLNIRAGKASPTVLNGVFVDYYGSQTPISGVASVTVPDAKTILIQPWD 72
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K+ +++IEKAI+ S++G+TP+N+GE IRL++P LT ERRKEL K V ++AE ++++RN
Sbjct: 73 KNLIRAIEKAIIDSNIGLTPSNNGEQIRLSIPPLTEERRKELVKQVRQEAETARISLRNA 132
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRDA++A++K QKE +SED KD + QKL D++ K +D+I KEKE++ V
Sbjct: 133 RRDAVEAFKKAQKE-GMSEDEAKDGETQAQKLLDKFTKSLDAILDNKEKEIMTV 185
>gi|395236889|ref|ZP_10415030.1| Ribosome-recycling factor [Turicella otitidis ATCC 51513]
gi|394487922|emb|CCI83118.1| Ribosome-recycling factor [Turicella otitidis ATCC 51513]
Length = 185
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 119/178 (66%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + RM T++ R + ++RTGR+NPAM + + EYYG+ + +A I+ P+ LLI
Sbjct: 8 DCEERMSNTVEHTREDLTTIRTGRANPAMFNGVTAEYYGAETPITQMASISVPEPRMLLI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
+PY+ S + +IE AI +SDLG+ P NDG V+R+T+PQLT ERRKE+ K+ + E+GK+A
Sbjct: 68 KPYEPSIMDAIETAIRNSDLGVNPTNDGHVLRVTVPQLTEERRKEMVKLARSKGEDGKIA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRNIRR ++ +KLQK+ ED VK +L+K T Y++ ID + KE EL++V
Sbjct: 128 VRNIRRKGMEQLKKLQKDGDAGEDEVKASEGELEKTTATYVENIDKLVSAKENELMEV 185
>gi|315038582|ref|YP_004032150.1| ribosome recycling factor [Lactobacillus amylovorus GRL 1112]
gi|312276715|gb|ADQ59355.1| ribosome recycling factor [Lactobacillus amylovorus GRL 1112]
Length = 185
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 124/176 (70%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K + M+++I + + S+R G +N A+LD ++VEYYG+P L ++ I P+ LL
Sbjct: 7 KKAQENMDKSIKVYQKKLASIRAGVANAALLDNVQVEYYGAPTPLTQMSSITIPEPRVLL 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
I PYD++SL IE A+++S+LG+TP NDG+VIRL +PQLT ERR+E++K V K AEE K+
Sbjct: 67 ITPYDQNSLDDIEHALLASNLGLTPANDGKVIRLVIPQLTGERREEIAKEVGKYAEEAKI 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
AVRN+RRDA+ + ++ +K+ ++ED ++L +QK+TD KKID + +K KE+
Sbjct: 127 AVRNVRRDAMNSLKREEKDGDITEDEQRNLEKQVQKVTDGAAKKIDQLADEKRKEI 182
>gi|213691943|ref|YP_002322529.1| ribosome recycling factor [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
gi|384199098|ref|YP_005584841.1| ribosome recycling factor [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
gi|254809493|sp|B7GQS1.1|RRF_BIFLI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|213523404|gb|ACJ52151.1| ribosome recycling factor [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
gi|320458050|dbj|BAJ68671.1| ribosome recycling factor [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
Length = 183
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 123/174 (70%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M +T++ + NF+ +RTGR+NPA+L+ I V+YYG+P +K++A I P+ +L + P+D
Sbjct: 10 QMAKTVENTKENFSGIRTGRANPALLNGITVDYYGAPTPIKAVASIGVPEPRTLSVTPFD 69
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
S ++EKA+ +SDLG++PN DG VIRLT+P+LT ERRKE K+ +AE+GKVAVRNI
Sbjct: 70 ASQAGAVEKALRNSDLGVSPNRDGNVIRLTMPELTEERRKEYVKLAKGKAEDGKVAVRNI 129
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RR +A +K K+ ++ ED L DL K+T +ID++ + K+KE+++V
Sbjct: 130 RRKTKEALDKAVKDGEMGEDEGDRLLKDLDKVTKSVTDEIDALLESKQKEIMEV 183
>gi|260905212|ref|ZP_05913534.1| ribosome recycling factor [Brevibacterium linens BL2]
Length = 185
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 122/178 (68%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ + +M++ ++ + +F+S+RTGR+NPA+ IE++YYG+P L+ +A TP++ ++L+
Sbjct: 8 EAREKMDKAVEFTQEDFSSIRTGRANPALFASIEIDYYGAPTPLQQLASFQTPEARTILV 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
PYD+ +L IE A+ +SD+G P NDG VIR+ LP+LT ERRKE K+V +AE+GKV+
Sbjct: 68 TPYDRGALGDIETALRNSDIGANPANDGNVIRVVLPELTEERRKEYVKIVKGKAEDGKVS 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRR A + E+++K+ ED V S+L LT + +D + QKE ELL+V
Sbjct: 128 IRNIRRHAKETLERIKKDGDAGEDEVARGISELDDLTKSKVDNVDKLLNQKEAELLEV 185
>gi|403251727|ref|ZP_10918055.1| ribosome recycling factor [actinobacterium SCGC AAA027-L06]
gi|402914951|gb|EJX35946.1| ribosome recycling factor [actinobacterium SCGC AAA027-L06]
Length = 187
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 120/174 (68%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
+M + ID+ + +F ++RTGR++PAM K+ V+YYG+ L +A + P++ LI PYD
Sbjct: 14 KMNKAIDVAKEDFATIRTGRAHPAMFAKLMVDYYGTGTPLSQLATVQVPEARLALITPYD 73
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
K ++ +IEK+I SDLG+ P +DG VIR+ PQLT ERRKE KV +AE+ KV++R I
Sbjct: 74 KGAMAAIEKSIRDSDLGVNPGSDGTVIRVNFPQLTEERRKEFIKVAKGKAEDSKVSIRAI 133
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RR A +A EKL+K+ K+ +D++ +L+K+T E+ KID + K KE ELL+V
Sbjct: 134 RRAAKEAMEKLEKDGKVGKDDLARAEKELEKVTGEHTAKIDELLKHKEAELLEV 187
>gi|367469622|ref|ZP_09469364.1| Ribosome recycling factor [Patulibacter sp. I11]
gi|365815299|gb|EHN10455.1| Ribosome recycling factor [Patulibacter sp. I11]
Length = 190
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 79/178 (44%), Positives = 122/178 (68%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D K RM + ++ F +VRTGR++P +LD++ V+Y+G P +L+ ++ I+ P++ L +
Sbjct: 13 DAKERMAKAVEQTSGEFATVRTGRASPNLLDRVVVDYHGVPTALRQLSTISAPEARLLTV 72
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYD SS+K IEKAI SDLG+TP+NDG+ IRL +P++T ERR+E+ KV + AEEG++
Sbjct: 73 QPYDPSSIKQIEKAISDSDLGVTPSNDGKTIRLGIPEMTEERRREMVKVARQIAEEGRIR 132
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRN+RRD L+ + + ED + DLQKLTD + ++D+ K KE ++L+V
Sbjct: 133 VRNVRRDVQHDLRTLKTDGDVGEDEERRAEGDLQKLTDAAIAELDAALKAKEADVLEV 190
>gi|421498363|ref|ZP_15945481.1| Ribosome-recycling factor [Aeromonas media WS]
gi|407182664|gb|EKE56603.1| Ribosome-recycling factor [Aeromonas media WS]
Length = 185
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 79/181 (43%), Positives = 132/181 (72%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I+ D K RM +++D ++T + +RTGR++P++LD I+VEYYG+ LK +A + D+ +
Sbjct: 5 IKNDAKDRMAKSVDSLKTQMSKIRTGRAHPSLLDGIQVEYYGAATPLKQLANVVAEDART 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L I +D+S ++++EKAI++SDLG+ P+++G+ +R+ LP LT ERR++L+K+V +AE
Sbjct: 65 LSISIFDRSMIQAVEKAILTSDLGLNPSSNGQTLRVPLPPLTEERRRDLTKIVRAEAEGA 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
+VAVRNIRRDA + L K+K++SED+ + ++QKLTD ++K +D KEKEL++
Sbjct: 125 RVAVRNIRRDANADLKALLKDKEISEDDDRRAQEEIQKLTDAFVKLVDEALAAKEKELME 184
Query: 276 V 276
+
Sbjct: 185 I 185
>gi|354604105|ref|ZP_09022098.1| ribosome recycling factor [Alistipes indistinctus YIT 12060]
gi|353348537|gb|EHB92809.1| ribosome recycling factor [Alistipes indistinctus YIT 12060]
Length = 186
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 80/185 (43%), Positives = 130/185 (70%), Gaps = 1/185 (0%)
Query: 92 EKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTP 151
E +I +A+M++ I+ + SVR G+++ +L+ I V+YYG+P + +A + P
Sbjct: 3 EPKTILDPAQAKMDKAIEFLVEALASVRAGKASTNLLNGITVDYYGNPTPVSQVASVTVP 62
Query: 152 DSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 211
D+ ++LIQP++K+ + +IEKAI+ +++G+TP+N+GE IRL +P LT ERRKEL K + +
Sbjct: 63 DARTVLIQPWEKNLIGAIEKAILVANIGLTPSNNGEHIRLNIPPLTEERRKELVKQIKSE 122
Query: 212 AEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEK 271
AE ++++RNIRRDA++A++K QKE + ED KD QKLTD+YMKK+D ++ KE
Sbjct: 123 AETARISIRNIRRDAVEAFKKAQKE-GMPEDMAKDGEDSSQKLTDKYMKKVDELFAAKEA 181
Query: 272 ELLKV 276
E++ V
Sbjct: 182 EIMTV 186
>gi|169350431|ref|ZP_02867369.1| hypothetical protein CLOSPI_01199 [Clostridium spiroforme DSM 1552]
gi|169292751|gb|EDS74884.1| ribosome recycling factor [Clostridium spiroforme DSM 1552]
Length = 181
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 120/174 (68%), Gaps = 4/174 (2%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
RM +TID + + +VRTGR+NPAMLD++ V YYGSP + +A I+ + L+I+PYD
Sbjct: 12 RMGKTIDSFKRDLTTVRTGRANPAMLDRVMVNYYGSPTPINQMAGISVVEGRQLVIKPYD 71
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
KS +K IE I ++LG+TP NDGE+IR+ +P LT +RR+E +K V K AE KV++RNI
Sbjct: 72 KSVIKDIEHGIYEAELGLTPQNDGEIIRIMVPALTEDRRREFAKQVWKFAENAKVSIRNI 131
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
RRD+ +K+ SED +K +QKLTD+++K+ID I K KEKE++ V
Sbjct: 132 RRDSNDEIKKVDG----SEDEIKAGQEKVQKLTDKFVKEIDEIAKVKEKEIMTV 181
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.312 0.126 0.338
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,795,041,445
Number of Sequences: 23463169
Number of extensions: 137154974
Number of successful extensions: 613684
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3460
Number of HSP's successfully gapped in prelim test: 1001
Number of HSP's that attempted gapping in prelim test: 607095
Number of HSP's gapped (non-prelim): 6411
length of query: 276
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 136
effective length of database: 9,074,351,707
effective search space: 1234111832152
effective search space used: 1234111832152
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 76 (33.9 bits)