BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023857
(276 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M1X0|RRFC_ARATH Ribosome-recycling factor, chloroplastic OS=Arabidopsis thaliana
GN=RRF PE=1 SV=2
Length = 275
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 192/281 (68%), Positives = 228/281 (81%), Gaps = 11/281 (3%)
Query: 1 MATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSRL 60
MA FSST P + + ++N K LL LPDSC R +A S S R + + +L
Sbjct: 1 MAASFSSTAPTTPVLRFRANYSKPLLSLPDSCLRIISSAI----SPSTRLIACSFKTDKL 56
Query: 61 -----VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNF 115
V LS P+V R L ++ V+R ATIEEIEAEKS+IE DVK++ME+TI+ +RT+F
Sbjct: 57 PLGAGVNLSGGPVVKRSL--QKRLVIRSATIEEIEAEKSAIETDVKSKMEKTIETLRTSF 114
Query: 116 NSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVS 175
NS+RTGRSN AMLDKIEVEYYGSPVSLKSIAQI+TPD SSLL+QPYDKSSLK+IEKAIV+
Sbjct: 115 NSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLLQPYDKSSLKAIEKAIVN 174
Query: 176 SDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQK 235
SDLG+TPNNDG+VIRL+LP LTS+RRKELSKVVAKQ+EEGKVA+RNIRRDALK+Y+KL+K
Sbjct: 175 SDLGVTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQSEEGKVALRNIRRDALKSYDKLEK 234
Query: 236 EKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
EKKLSEDNVKDLSSDLQKL D YMKKI+ +YKQKEKEL+KV
Sbjct: 235 EKKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQKEKELMKV 275
>sp|P82231|RRFC_SPIOL Ribosome-recycling factor, chloroplastic OS=Spinacia oleracea
GN=RRF PE=1 SV=1
Length = 271
Score = 348 bits (894), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 173/240 (72%), Positives = 207/240 (86%), Gaps = 5/240 (2%)
Query: 41 CRASSVSVRQWSSAANYSRL----VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSI 96
C + +V W S+ANY R+ K S K +VV+QL R G RCAT+EE+EAEKS I
Sbjct: 33 CNIARTNVSVWRSSANYVRMDCGVKKFSGKAVVVKQL-QNRAGTFRCATMEEVEAEKSLI 91
Query: 97 EKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSL 156
E + K RME+TI+ +R+NFNSVRT R++P MLD+IEVEYYG+PVSLKSIAQI+TPD+SSL
Sbjct: 92 ETNTKQRMEKTIETIRSNFNSVRTNRASPTMLDRIEVEYYGTPVSLKSIAQISTPDASSL 151
Query: 157 LIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
LI PYDKSSLK+IEKAIV+S LG++PNNDGEVIRL+LP LTS+RRKEL+KVV+K AEEGK
Sbjct: 152 LISPYDKSSLKAIEKAIVTSQLGVSPNNDGEVIRLSLPPLTSDRRKELAKVVSKLAEEGK 211
Query: 217 VAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VAVRNIRRDALK+YEKL+KEKKLSEDNVKDLS+DLQKLTDEYMKK++SIYKQKE+EL+KV
Sbjct: 212 VAVRNIRRDALKSYEKLEKEKKLSEDNVKDLSADLQKLTDEYMKKVESIYKQKEQELMKV 271
>sp|P37706|RRFC_DAUCA Ribosome-recycling factor, chloroplastic (Fragment) OS=Daucus
carota GN=RRF PE=2 SV=2
Length = 227
Score = 340 bits (871), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 166/230 (72%), Positives = 203/230 (88%), Gaps = 7/230 (3%)
Query: 51 WSSAANYSRL----VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMER 106
W++AANY ++ K + K +V L+ KR G ++CAT+EEIEAEKS IEK VK RME+
Sbjct: 1 WTAAANYVKIKVGTGKFARKTVV---LSQKRTGTLKCATMEEIEAEKSLIEKSVKERMEK 57
Query: 107 TIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSL 166
TI+ V+ +FNS+RT RSNP MLDKI+VEYYG+P SLKSIAQI+TPDSSSLL+ PYDKSSL
Sbjct: 58 TIENVKASFNSIRTXRSNPDMLDKIKVEYYGTPTSLKSIAQISTPDSSSLLVNPYDKSSL 117
Query: 167 KSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDA 226
K IEKAIV+SDLG+TPNNDG+VIRL++PQLT++RRKELSK+VAKQAEEGKVA+RNIRRDA
Sbjct: 118 KDIEKAIVNSDLGITPNNDGDVIRLSIPQLTADRRKELSKIVAKQAEEGKVALRNIRRDA 177
Query: 227 LKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+K+Y+KL+KEKKLSEDNVKDLSSDLQK+ DEY+KK+DSI+KQKEKEL+ V
Sbjct: 178 IKSYDKLEKEKKLSEDNVKDLSSDLQKVIDEYIKKVDSIFKQKEKELMTV 227
>sp|A3BLC3|RRFC_ORYSJ Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os07g0570700 PE=2 SV=2
Length = 266
Score = 316 bits (810), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 158/230 (68%), Positives = 200/230 (86%), Gaps = 6/230 (2%)
Query: 51 WSSAANYSRL----VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMER 106
SS+ N+ L ++ ++P+++ Q + KR V+R ATIEEIEAEKS IE + RME+
Sbjct: 39 LSSSTNFMSLRAGPMRFYSRPLIL-QNSDKR-AVLRHATIEEIEAEKSVIEDQARERMEK 96
Query: 107 TIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSL 166
I+ V+ NFN+VRTGR+NPAMLD+IEVEYYG+PV+LKSIAQINTPD++SLLIQPYDKSSL
Sbjct: 97 AIETVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATSLLIQPYDKSSL 156
Query: 167 KSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDA 226
K IEK IV+++LG+TP+NDGEVIR+T+P LTS+RRKEL+K VAK AEEGKVA+RNIRRDA
Sbjct: 157 KLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEEGKVAIRNIRRDA 216
Query: 227 LKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+KAY+KL+KEKKLSEDNVKDLS+DLQK+TDEYMKKI++I KQKE+EL+K+
Sbjct: 217 IKAYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIEAIQKQKEQELMKI 266
>sp|A2YMU2|RRFC_ORYSI Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp.
indica GN=OsI_26546 PE=1 SV=2
Length = 266
Score = 316 bits (810), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 158/230 (68%), Positives = 200/230 (86%), Gaps = 6/230 (2%)
Query: 51 WSSAANYSRL----VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMER 106
SS+ N+ L ++ ++P+++ Q + KR V+R ATIEEIEAEKS IE + RME+
Sbjct: 39 LSSSTNFMSLRAGPMRFYSRPLIL-QNSDKR-AVLRHATIEEIEAEKSVIEDQARERMEK 96
Query: 107 TIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSL 166
I+ V+ NFN+VRTGR+NPAMLD+IEVEYYG+PV+LKSIAQINTPD++SLLIQPYDKSSL
Sbjct: 97 AIETVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATSLLIQPYDKSSL 156
Query: 167 KSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDA 226
K IEK IV+++LG+TP+NDGEVIR+T+P LTS+RRKEL+K VAK AEEGKVA+RNIRRDA
Sbjct: 157 KLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEEGKVAIRNIRRDA 216
Query: 227 LKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+KAY+KL+KEKKLSEDNVKDLS+DLQK+TDEYMKKI++I KQKE+EL+K+
Sbjct: 217 IKAYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIEAIQKQKEQELMKI 266
>sp|Q2JHW2|RRF_SYNJB Ribosome-recycling factor OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=frr PE=3 SV=1
Length = 182
Score = 216 bits (551), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 101/175 (57%), Positives = 139/175 (79%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+++ M + + + +FN+VRTGR+N ++LD+I+VEYYG P LK++A + TPDSS+LLI
Sbjct: 5 EIEELMNKAVQATQRSFNTVRTGRANSSLLDRIQVEYYGVPTPLKALASLTTPDSSTLLI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D S+L +IE+AIV+SDLG+TP+NDG+V+RLT+P LT ERRKELSK VAK AEEG+V+
Sbjct: 65 QPFDPSTLAAIERAIVASDLGLTPSNDGKVVRLTIPPLTEERRKELSKQVAKLAEEGRVS 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+RNIRRD + + K +K +LSED K L D+QKLTD Y+KKID + +KEKEL
Sbjct: 125 IRNIRRDGIDSVRKREKNGELSEDESKSLQDDIQKLTDRYIKKIDELLAEKEKEL 179
>sp|Q8DM64|RRF_THEEB Ribosome-recycling factor OS=Thermosynechococcus elongatus (strain
BP-1) GN=frr PE=3 SV=1
Length = 182
Score = 213 bits (543), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 98/178 (55%), Positives = 141/178 (79%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
DV+ RM+++++ + +FNS+RTGR+N A+LD++ V+YYG+ L+S+A ++TPD++++LI
Sbjct: 5 DVEERMQKSVEATQHDFNSIRTGRANAALLDRVMVDYYGTETPLRSLANVSTPDATTILI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYD+S+L SIEKAI SDLG+TPNNDG +RL +P LT+ERRKEL K AK AE GKVA
Sbjct: 65 QPYDRSTLASIEKAIQLSDLGLTPNNDGSSVRLNIPPLTTERRKELVKTAAKIAEGGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ +K K +L+ED VKDL +QKLTD+Y+ KID++ +KEK+++ V
Sbjct: 125 IRNIRRDAIDHIKKAGKAGELTEDEVKDLQEKVQKLTDKYIGKIDALLAEKEKDIMTV 182
>sp|Q8YXK4|RRF_NOSS1 Ribosome-recycling factor OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=frr PE=3 SV=1
Length = 182
Score = 207 bits (528), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 96/175 (54%), Positives = 138/175 (78%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+ +++M+ T++ + FN++RTGR+N ++LDK+ V+YYGSP LKS+A I+TPD++++LI
Sbjct: 5 EAESKMQHTVEATQRAFNTIRTGRANASLLDKVLVDYYGSPTPLKSLANISTPDATTILI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYDKSSL +EKAI SD+G+TP+NDG VIRL +P LTS+RRKEL K+ AK AEEG+VA
Sbjct: 65 QPYDKSSLNIVEKAISLSDVGLTPSNDGAVIRLNIPPLTSDRRKELVKIAAKYAEEGRVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+RNIRRDA+ + KL+K ++SED KD LQKLT++Y +ID + +KEK++
Sbjct: 125 IRNIRRDAVDSIRKLEKNAEVSEDEAKDQQDKLQKLTNKYTARIDELLVEKEKDI 179
>sp|Q5N3B7|RRF_SYNP6 Ribosome-recycling factor OS=Synechococcus sp. (strain ATCC 27144 /
PCC 6301 / SAUG 1402/1) GN=frr PE=3 SV=1
Length = 182
Score = 207 bits (526), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 94/178 (52%), Positives = 141/178 (79%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
DV++ M+++++ +FN++RTGR+N ++LDKI V+YYGS LKS+A I+TPD+S+L I
Sbjct: 5 DVESTMQKSVEATLRSFNTIRTGRANASLLDKIVVDYYGSETPLKSLASISTPDASTLQI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D+SS+ +IEKAI SD+G+TPNNDG++IRL +P LTS+RRKEL K+ AK AEEGKVA
Sbjct: 65 QPFDRSSMGAIEKAISLSDIGLTPNNDGQIIRLNIPPLTSDRRKELVKLAAKYAEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RN+RRDA+ + KL+K ++SED+ +D +QKLTD++ K++ + KEK+++ V
Sbjct: 125 IRNVRRDAIDSIRKLEKSGEISEDDARDQQDQVQKLTDKFSAKVEQLLSDKEKDIMTV 182
>sp|Q31QY0|RRF_SYNE7 Ribosome-recycling factor OS=Synechococcus elongatus (strain PCC
7942) GN=frr PE=3 SV=1
Length = 182
Score = 207 bits (526), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 94/178 (52%), Positives = 141/178 (79%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
DV++ M+++++ +FN++RTGR+N ++LDKI V+YYGS LKS+A I+TPD+S+L I
Sbjct: 5 DVESTMQKSVEATLRSFNTIRTGRANASLLDKIVVDYYGSETPLKSLASISTPDASTLQI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D+SS+ +IEKAI SD+G+TPNNDG++IRL +P LTS+RRKEL K+ AK AEEGKVA
Sbjct: 65 QPFDRSSMGAIEKAISLSDIGLTPNNDGQIIRLNIPPLTSDRRKELVKLAAKYAEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RN+RRDA+ + KL+K ++SED+ +D +QKLTD++ K++ + KEK+++ V
Sbjct: 125 IRNVRRDAIDSIRKLEKSGEISEDDARDQQDQVQKLTDKFSAKVEQLLSDKEKDIMTV 182
>sp|B8HL79|RRF_CYAP4 Ribosome-recycling factor OS=Cyanothece sp. (strain PCC 7425 / ATCC
29141) GN=frr PE=3 SV=1
Length = 182
Score = 206 bits (524), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 95/175 (54%), Positives = 137/175 (78%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
DV+ M+++++ + FN++RTGR+N ++LD++ VEYYG+ L+S+A I+TPDSS++ I
Sbjct: 5 DVEDHMQKSVEATQRAFNTIRTGRANTSLLDRVTVEYYGAETPLRSLANISTPDSSTIAI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D++SL IEKAI SDLG+TPNNDG VIRL +P LTS+RRKEL K +K AEEGKV+
Sbjct: 65 QPFDRNSLNLIEKAISMSDLGLTPNNDGTVIRLNIPPLTSDRRKELVKTASKLAEEGKVS 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+RN+RRDA+ + +K K +LSED VKDL +QKLTD+Y+ K+D + +KEK++
Sbjct: 125 IRNVRRDAVDSVKKQGKAGELSEDEVKDLQDKIQKLTDKYIAKVDGLLAEKEKDI 179
>sp|P74456|RRF_SYNY3 Ribosome-recycling factor OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=frr PE=3 SV=1
Length = 182
Score = 204 bits (520), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 95/178 (53%), Positives = 135/178 (75%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
++K M+++++ + +FN++RTGR+N ++LD+I VEYYG+ LKS+A I TPD+S+++I
Sbjct: 5 ELKDHMQKSVEATQRSFNTIRTGRANASLLDRITVEYYGAETPLKSLATIGTPDASTIVI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D S+ +IEKAI SDLG+TPNNDG+VIRL +P LT+ERRKEL KV K AEEGKVA
Sbjct: 65 QPFDMGSIGTIEKAISLSDLGLTPNNDGKVIRLNIPPLTAERRKELVKVAGKLAEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ K +K +SED +DL ++QKLTD+ K+ID + KEK++ V
Sbjct: 125 IRNIRRDAVDEVRKQEKNSDISEDEARDLQEEIQKLTDQSTKRIDELLAAKEKDITTV 182
>sp|B7K7R4|RRF_CYAP7 Ribosome-recycling factor OS=Cyanothece sp. (strain PCC 7424)
GN=frr PE=3 SV=1
Length = 182
Score = 203 bits (517), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 94/178 (52%), Positives = 136/178 (76%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V+ M++TI+ + +FN++RTGR+N A+LD++ V+YYG+ LKS+A I TPD++++ I
Sbjct: 5 EVQDNMQKTIESTQRSFNTIRTGRANSALLDRVMVDYYGTETPLKSLANITTPDATTIAI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYD+ S+ IEKAI SD+G+TPNNDG++IRL +P LT+ERRKEL K+ K AEEGKVA
Sbjct: 65 QPYDRGSMGQIEKAIQLSDIGLTPNNDGQMIRLNIPPLTTERRKELVKLAGKLAEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ + K +K +LSED ++L ++QK+TDEY KID + KEK++ V
Sbjct: 125 IRNIRRDAIDSVRKQEKNHELSEDESRNLQDEIQKVTDEYTAKIDELLAAKEKDISTV 182
>sp|B2IVW4|RRF_NOSP7 Ribosome-recycling factor OS=Nostoc punctiforme (strain ATCC 29133
/ PCC 73102) GN=frr PE=3 SV=1
Length = 182
Score = 202 bits (513), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 94/181 (51%), Positives = 139/181 (76%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I D K++M+ +++ + FN++RTGR+N ++LDK+ V+YYGSP LKS+A I+TPD+S+
Sbjct: 2 ILADAKSKMQSSVESTQRAFNTIRTGRANASLLDKVLVDYYGSPTPLKSLANISTPDAST 61
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
+LIQPY++++L IEKAI SD+G+TP+NDG VIRL +P LTS+RRKE K+ K AEEG
Sbjct: 62 ILIQPYERNTLNIIEKAISLSDVGLTPSNDGSVIRLNIPPLTSDRRKEFVKMATKYAEEG 121
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
+VA+RNIRRDA+ + K +K ++S+D KD +LQKLT+EY +ID++ +KEK++
Sbjct: 122 RVAIRNIRRDAIDSIRKQEKASEISKDESKDQQDNLQKLTNEYTSRIDALLAEKEKDITT 181
Query: 276 V 276
V
Sbjct: 182 V 182
>sp|Q10Y49|RRF_TRIEI Ribosome-recycling factor OS=Trichodesmium erythraeum (strain
IMS101) GN=frr PE=3 SV=1
Length = 182
Score = 200 bits (509), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 94/179 (52%), Positives = 134/179 (74%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+ + +M++ I+ + +FN+VRTGR+N ++LD++ VEYYGSP LKS+A I PD+S++
Sbjct: 4 KEAEEKMQKAIEATKNSFNTVRTGRANASLLDRVMVEYYGSPTQLKSMANIGIPDASTIT 63
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQPYDK+SL IEKAI SD+G+TPNNDG +IRL +P LT+ERR+E+ K AK AEEGKV
Sbjct: 64 IQPYDKTSLGLIEKAINMSDVGLTPNNDGSIIRLNIPALTAERRQEMVKKTAKLAEEGKV 123
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
++RNIRRDA+ + K +K +S+D +DL +QK TD+Y+ KID + KEK++ V
Sbjct: 124 SIRNIRRDAVDSIRKQEKNSDISKDESRDLQDKVQKKTDKYIAKIDELLAAKEKDMTTV 182
>sp|Q5WFT1|RRF_BACSK Ribosome-recycling factor OS=Bacillus clausii (strain KSM-K16)
GN=frr PE=3 SV=1
Length = 185
Score = 200 bits (508), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 94/181 (51%), Positives = 136/181 (75%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I+ D K RM++ ID++ +R GR+NPA+LD++ VEYYG+ L +A + P++
Sbjct: 5 IKADAKTRMDKAIDVLSRELAKLRAGRANPALLDRVTVEYYGAQTPLNQLASVTVPEARL 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LLI PYDK+++ SIEKAI+ SDLG+TP+NDG+VIR+ +P LT ERRK+L ++V+K AEE
Sbjct: 65 LLITPYDKTAVASIEKAILKSDLGLTPSNDGQVIRIAIPPLTEERRKDLVRLVSKTAEES 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVAVRNIRRDA +KLQK+ +++ED ++ + D+QKLTD Y+ KID KQKE+E+++
Sbjct: 125 KVAVRNIRRDANDELKKLQKDGEMTEDELRSATDDIQKLTDTYVAKIDEKAKQKEQEIIE 184
Query: 276 V 276
V
Sbjct: 185 V 185
>sp|B1X0Q1|RRF_CYAA5 Ribosome-recycling factor OS=Cyanothece sp. (strain ATCC 51142)
GN=frr PE=3 SV=1
Length = 182
Score = 200 bits (508), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 90/178 (50%), Positives = 134/178 (75%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D+K M+++++ + +FN++RTGR+N ++LD++ VEYYG+ L +A I+TPD+++++I
Sbjct: 5 DLKENMQKSVEATQRSFNTIRTGRANASILDRVTVEYYGTETPLYQLANISTPDATTIMI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QPYDK S+ IEKAI SD+G+TPNNDG+VIRL +P LT ERRK+L K+ +K AEEGKVA
Sbjct: 65 QPYDKGSMGQIEKAIQMSDVGLTPNNDGQVIRLNIPPLTEERRKDLVKLASKMAEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ K +K +SED + L D+QK+TD++ KID + KEK+++ V
Sbjct: 125 IRNIRRDAIDDVRKQEKNSDISEDESRGLQDDIQKVTDQFTDKIDELLAAKEKDIMTV 182
>sp|Q7V6C1|RRF_PROMM Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT
9313) GN=frr PE=3 SV=1
Length = 182
Score = 199 bits (505), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 91/179 (50%), Positives = 135/179 (75%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
+++K M ++++ + NF ++RTGR+NP++LD+I VEYYG+ LKS+A I+TPDS ++
Sbjct: 4 QELKDNMHKSVEATQRNFATIRTGRANPSLLDRINVEYYGTETPLKSLATISTPDSQTIA 63
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D S+ IEKAI +SDLG+TPNNDG++IR+ +P LT ERRKE K+ A+ AEEGKV
Sbjct: 64 IQPFDNGSMGLIEKAIATSDLGLTPNNDGKIIRINVPPLTEERRKEFCKLAARYAEEGKV 123
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RNIRRDA+ +KL+K+ +LS+D D +QKLTD ++ +I+ +KE ++LKV
Sbjct: 124 ALRNIRRDAIDKVKKLEKDAELSKDQSHDEQDGIQKLTDTFITEIEKYLAEKEADILKV 182
>sp|B1XJ13|RRF_SYNP2 Ribosome-recycling factor OS=Synechococcus sp. (strain ATCC 27264 /
PCC 7002 / PR-6) GN=frr PE=3 SV=1
Length = 182
Score = 198 bits (504), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 93/178 (52%), Positives = 133/178 (74%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+++ M++TI+ + +FN++RTGR++ ++LD+I VEYYG+ LKS+A I+TPDSS+++I
Sbjct: 5 ELRENMQKTIEATQRSFNTLRTGRASASLLDRITVEYYGAETPLKSLASISTPDSSTIMI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D+ SL +E+AI SDLG+TPNNDG IRL +P LT ERR+EL K K AEEGKVA
Sbjct: 65 QPFDRGSLSDVERAISMSDLGLTPNNDGTNIRLNIPPLTKERRQELVKTAGKLAEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ K +K +SED + L D+QK+TDE+ KID + K KEK+++ V
Sbjct: 125 LRNIRRDAIDDVRKQEKNSDISEDESRSLQDDIQKVTDEFTTKIDDLLKIKEKDIMTV 182
>sp|B0JKT7|RRF_MICAN Ribosome-recycling factor OS=Microcystis aeruginosa (strain
NIES-843) GN=frr PE=3 SV=1
Length = 182
Score = 197 bits (501), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 91/178 (51%), Positives = 138/178 (77%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
+V+ +M++T++ + FN++RTGR+N ++LD+I VEYYG LKS+A I+TPD++++ I
Sbjct: 5 EVQDQMQKTVESTQRAFNTIRTGRANASLLDRIVVEYYGMETPLKSLATISTPDATTIAI 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D++S+ +IEKAI SD+G+TP+NDG+ IRL +P LTS+RRKEL K+ AK AEEGKVA
Sbjct: 65 QPFDRTSMGAIEKAISLSDVGLTPSNDGQTIRLNIPPLTSDRRKELVKLAAKLAEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+RNIRRDA+ A K +K ++SED +DL +QK TD+++ KI+ + KEK+++ V
Sbjct: 125 IRNIRRDAIDAIRKREKGHEISEDESRDLQDQVQKSTDKFIAKIEDLLTTKEKDIMTV 182
>sp|Q46GQ5|RRF_PROMT Ribosome-recycling factor OS=Prochlorococcus marinus (strain
NATL2A) GN=frr PE=3 SV=1
Length = 182
Score = 197 bits (500), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 94/179 (52%), Positives = 132/179 (73%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
+++K M ++I+ + NFN++RTGR+N ++LD+I VEYYG+ LKS+A I TPDS ++
Sbjct: 4 QELKTTMSKSIEAAQRNFNTIRTGRANTSLLDRISVEYYGAETPLKSLATITTPDSQTIA 63
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D SL SIEKAI +SDLG TPNNDG++IR+ +P LT ERRKE K+ +K AEEGKV
Sbjct: 64 IQPFDLGSLASIEKAIATSDLGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKV 123
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RNIRR+A+ +K +K+ LSED +D +QK TD ++K I+ +KE E+LKV
Sbjct: 124 ALRNIRREAIDRVKKSEKDGDLSEDQSRDEQETIQKETDNFIKDIEKKLSEKEAEILKV 182
>sp|A9BEE4|RRF_PROM4 Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT
9211) GN=frr PE=3 SV=1
Length = 182
Score = 196 bits (498), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 93/181 (51%), Positives = 137/181 (75%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I K+++ M ++++ + NFN++RTGR+N ++LD++ VEYYG+ LKS+A I+TPDS +
Sbjct: 2 ITKELEQNMRKSVEAAQRNFNTIRTGRANTSLLDRLTVEYYGADTPLKSLATISTPDSQT 61
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
+ IQP+D SSL IEK+I SDLG TPNNDG++IR+ +P LT ERRKE K+ +K AEEG
Sbjct: 62 ISIQPFDLSSLVLIEKSIAMSDLGFTPNNDGKIIRINIPPLTEERRKEFCKLASKYAEEG 121
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVA+RNIRRDA++ +K +KE ++SED +D ++QKLTD ++ +I+ KE+E+LK
Sbjct: 122 KVALRNIRRDAIERIKKSEKESEISEDQSRDEQDNVQKLTDRFITEIEKNLSDKEQEILK 181
Query: 276 V 276
V
Sbjct: 182 V 182
>sp|Q0I8L4|RRF_SYNS3 Ribosome-recycling factor OS=Synechococcus sp. (strain CC9311)
GN=frr PE=3 SV=1
Length = 182
Score = 195 bits (496), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 90/178 (50%), Positives = 132/178 (74%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D++A M ++++ + NFN++RTGR+NP++LD+I VEYYG+ LKS+A ++TPDS ++ +
Sbjct: 5 DLEANMRKSVEATQRNFNTIRTGRANPSLLDRINVEYYGADTPLKSLASLSTPDSQTIAV 64
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+D SL IEKAI +SDLG TPNNDG++IR+ +P LT ERRKE K+ AK +EEGKVA
Sbjct: 65 QPFDMGSLALIEKAIATSDLGFTPNNDGKIIRINVPPLTEERRKEFCKLAAKYSEEGKVA 124
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
+R++RRDA+ +K +KE LSED +D +QK TD ++ +++ KE E+LKV
Sbjct: 125 LRSVRRDAIDKIKKQEKEGDLSEDQSRDEQDQVQKTTDRFIAELEKHLADKEVEILKV 182
>sp|A2C0Y0|RRF_PROM1 Ribosome-recycling factor OS=Prochlorococcus marinus (strain
NATL1A) GN=frr PE=3 SV=1
Length = 182
Score = 195 bits (496), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 93/179 (51%), Positives = 132/179 (73%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
+++K M ++++ + NFN++RTGR+N ++LD+I VEYYG+ LKS+A I TPDS ++
Sbjct: 4 QELKNTMSKSVEAAQRNFNTIRTGRANTSLLDRISVEYYGAETPLKSLATITTPDSQTIA 63
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D SL SIEKAI +SDLG TPNNDG++IR+ +P LT ERRKE K+ +K AEEGKV
Sbjct: 64 IQPFDLGSLASIEKAIATSDLGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKV 123
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RNIRR+A+ +K +K+ LSED +D +QK TD ++K I+ +KE E+LKV
Sbjct: 124 ALRNIRREAIDRVKKSEKDGDLSEDQSRDEQEKIQKETDNFIKDIEKKLSEKEAEILKV 182
>sp|Q0AYK1|RRF_SYNWW Ribosome-recycling factor OS=Syntrophomonas wolfei subsp. wolfei
(strain Goettingen) GN=frr PE=3 SV=1
Length = 185
Score = 195 bits (495), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 96/178 (53%), Positives = 135/178 (75%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + RM++TI+ +R + S+R GR+NPAML+KI V+YYG P + +A I P++ L+I
Sbjct: 8 DTEERMKKTIEHLRKDLASLRAGRANPAMLEKIMVDYYGQPTPINQLANITVPEARLLVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+DK+ + SIEKAI+ SDLG+ P+NDG VIRL +PQLT ERRKEL KV+ K+AEE +VA
Sbjct: 68 QPWDKTIIASIEKAIMKSDLGINPSNDGNVIRLVIPQLTEERRKELVKVLRKRAEEARVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRNIRRD+ + + +KEK +SED+ K D+QK TD ++K+IDSI + KEKE+++V
Sbjct: 128 VRNIRRDSNELLKSGEKEKLISEDDNKKGMDDIQKETDRHIKEIDSILQGKEKEIMEV 185
>sp|Q65JJ6|RRF_BACLD Ribosome-recycling factor OS=Bacillus licheniformis (strain DSM 13
/ ATCC 14580) GN=frr PE=3 SV=1
Length = 185
Score = 194 bits (492), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 93/183 (50%), Positives = 133/183 (72%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ + + K RM++ I + +VR GR+NP++LDK+ VEYYG+ L IA I P++
Sbjct: 3 TQVMNETKERMQKAISAYQRELATVRAGRANPSLLDKVAVEYYGAQTPLNQIASITVPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
L+I PYDK++L IEKAI +DLG+TP+NDG +IR+T+P LT ERRKEL+K+V K +E
Sbjct: 63 RMLVITPYDKTALGDIEKAIQKADLGVTPSNDGNIIRITIPPLTEERRKELAKLVKKYSE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
+ KVAVRNIRRDA +KL+K +++ED ++ + D+QKLTDEY+ KID I K KEKE+
Sbjct: 123 DAKVAVRNIRRDANDDLKKLEKNGEMTEDELRSSTEDVQKLTDEYVSKIDEITKDKEKEI 182
Query: 274 LKV 276
++V
Sbjct: 183 MEV 185
>sp|A5D2T8|RRF_PELTS Ribosome-recycling factor OS=Pelotomaculum thermopropionicum
(strain DSM 13744 / JCM 10971 / SI) GN=frr PE=3 SV=1
Length = 185
Score = 194 bits (492), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 90/179 (50%), Positives = 135/179 (75%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
K+ ++ M++TI++V+ F S+R GR+ PA+LDK+ V YYG+P + +A I+ P++ L+
Sbjct: 7 KEAESNMKKTIEVVKKEFASLRAGRATPALLDKVMVNYYGTPTPVNQLANISVPEARLLV 66
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
+QP+DK+ L IE+AI+ SDLG+TP +DG VIRL +PQLT ERR EL KV+ K+AEEG+V
Sbjct: 67 VQPWDKTVLPEIERAILKSDLGITPASDGNVIRLAIPQLTQERRAELMKVIKKKAEEGRV 126
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RNIRRD + + QK+ K+SED +K ++QKLTD Y+K+IDS+ KE+E+++V
Sbjct: 127 AIRNIRRDTNEQLKSQQKDGKMSEDELKRSQDEVQKLTDRYIKEIDSLLSTKEQEIMQV 185
>sp|Q7V2F9|RRF_PROMP Ribosome-recycling factor OS=Prochlorococcus marinus subsp.
pastoris (strain CCMP1986 / MED4) GN=frr PE=3 SV=1
Length = 182
Score = 193 bits (490), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 93/180 (51%), Positives = 139/180 (77%)
Query: 97 EKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSL 156
E+++++ M ++++ + NFN++RTGR+N ++LD+I VEYYG+ +KS+A I+T DS ++
Sbjct: 3 EQEIQSSMNKSVEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLASISTIDSQTI 62
Query: 157 LIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
IQP+D SSL++IEKAI SDLG+TPNNDG+VIR+ +P LT ERRKE K+ +K AEEGK
Sbjct: 63 SIQPFDISSLQTIEKAISVSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGK 122
Query: 217 VAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VA+RNIRRDA+ +K +KE +S+D +D ++QK TD+Y+ I++ +KEKE+LKV
Sbjct: 123 VALRNIRRDAVDKEKKDEKEGLISKDVSRDNQLEIQKFTDKYISLIETKLSEKEKEILKV 182
>sp|C5D9B8|RRF_GEOSW Ribosome-recycling factor OS=Geobacillus sp. (strain WCH70) GN=frr
PE=3 SV=1
Length = 185
Score = 191 bits (486), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 89/176 (50%), Positives = 134/176 (76%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +M++ + ++R GR+NP++L+K+ V+YYG P + +A I+ P++ L+IQP
Sbjct: 10 KEKMDKAVQAFTRELATIRAGRANPSLLEKVTVDYYGMPTPIIQLASISVPEARLLVIQP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDKS +K IEKAI+SSDLG+TP+NDG VIR+T+P LT ERR+EL K+V K +E+ KVAVR
Sbjct: 70 YDKSVIKDIEKAILSSDLGLTPSNDGSVIRITIPPLTEERRRELVKLVKKYSEDAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRRDA +KL+K +++ED ++ + D+QKLTD+++ KID+I K+KEKE+++V
Sbjct: 130 NIRRDANDELKKLEKNGEITEDELRGYTDDVQKLTDDHIAKIDAITKEKEKEVMEV 185
>sp|A2BQ02|RRF_PROMS Ribosome-recycling factor OS=Prochlorococcus marinus (strain
AS9601) GN=frr PE=3 SV=1
Length = 182
Score = 191 bits (486), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 92/180 (51%), Positives = 138/180 (76%)
Query: 97 EKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSL 156
EK+++ M ++I+ + NFN++RTGR+N ++LD++ VEYYG+ +KS+A I+T DS ++
Sbjct: 3 EKEIQENMNKSIEATQRNFNTIRTGRANASLLDRVSVEYYGAETPIKSLATISTVDSQTI 62
Query: 157 LIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
IQP+D S L++IEK+I SDLG+TPNNDG+VIR+ +P LT ERRKE K+ +K AEEGK
Sbjct: 63 SIQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGK 122
Query: 217 VAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VA+RNIRRDA+ +K +K+ +S D +D S++QK+TD+Y+ I++ +KEKE+LKV
Sbjct: 123 VALRNIRRDAVDKEKKDEKDGLISIDESRDNQSEIQKITDKYIALIETKLSEKEKEILKV 182
>sp|P81101|RRF_BACSU Ribosome-recycling factor OS=Bacillus subtilis (strain 168) GN=frr
PE=1 SV=2
Length = 185
Score = 191 bits (485), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 129/176 (73%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +ME+ I + +VR GR+NP++LDK+ VEYYG+ L ++ IN P++ L+I P
Sbjct: 10 KEKMEKAIAAYQRELATVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARMLVITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+++ IEKAI+ +DLG+TP +DG +IR+ +P LT ERRKEL KVV K AEE KVAVR
Sbjct: 70 YDKTAIGDIEKAILKADLGLTPTSDGNMIRIAIPALTEERRKELVKVVKKYAEEAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N+RRDA +KL+K ++ED ++ + D+QKLTDEY+ KIDS+ K KEKE+++V
Sbjct: 130 NVRRDANDDLKKLEKNGDITEDELRASTEDVQKLTDEYVSKIDSVTKDKEKEIMEV 185
>sp|Q1WUG4|RRF_LACS1 Ribosome-recycling factor OS=Lactobacillus salivarius (strain
UCC118) GN=frr PE=3 SV=1
Length = 187
Score = 191 bits (485), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 93/180 (51%), Positives = 131/180 (72%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I K+ + +M + D +R ++R GR+N ++L++I VEYYG+P L +AQI+ P++
Sbjct: 7 IIKEAQEKMTKAEDSLRRELGNIRAGRANASLLNRINVEYYGAPTPLNQMAQISVPEARV 66
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
LL+ PYDK+SLK+IE AI++SDLG+ P NDG IRL +PQLT ERRKEL+K V +E G
Sbjct: 67 LLVTPYDKTSLKNIEHAIMASDLGIAPMNDGTAIRLVIPQLTEERRKELAKQVKAVSETG 126
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
KVAVRNIRRD + A +K QK L+ED+++DL + QK+TDE +K ID I + KEKE+L+
Sbjct: 127 KVAVRNIRRDMMDALKKAQKNGDLTEDDLRDLENQAQKVTDESIKNIDKITEDKEKEVLE 186
>sp|A7Z4S3|RRF_BACA2 Ribosome-recycling factor OS=Bacillus amyloliquefaciens (strain
FZB42) GN=frr PE=3 SV=1
Length = 185
Score = 191 bits (485), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 128/176 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K RME+ + SVR GR+NP++LDK+ VEYYG+ L ++ IN P++ L++ P
Sbjct: 10 KERMEKAVAAYSRELASVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARMLVVTP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+++ IEKAI+ +DLG+TP +DG +IR+ +P LT ERRKEL KVV K AEE KVAVR
Sbjct: 70 YDKTAIGDIEKAILKADLGVTPTSDGTIIRIAIPALTEERRKELVKVVKKYAEEAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N+RRD+ +KL+K ++ED ++ S D+QKLTDEY+ KIDS+ K KEKE+++V
Sbjct: 130 NVRRDSNDDLKKLEKNGDITEDELRASSEDVQKLTDEYVSKIDSVTKDKEKEIMEV 185
>sp|A6TRM0|RRF_ALKMQ Ribosome-recycling factor OS=Alkaliphilus metalliredigens (strain
QYMF) GN=frr PE=3 SV=1
Length = 185
Score = 191 bits (485), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 87/181 (48%), Positives = 140/181 (77%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
+ K ++ +M +T+ +++ +FNS+R G++NP+MLD+I V+YYGS LK +A ++ P+
Sbjct: 5 VHKRLEEKMTKTLGVLKDDFNSIRAGKANPSMLDRITVDYYGSITPLKQVASVSAPEPRL 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L+IQPYD S + IEKA++ SDLG+ P+NDG++IRL +PQLT ERRKEL+KVV + AEEG
Sbjct: 65 LIIQPYDPSVINGIEKALMMSDLGLNPSNDGKIIRLNIPQLTEERRKELTKVVKRVAEEG 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
+VA+RN RRDA + +K++K+ +L+ED++K ++QK+TD++ K++D + +KE E+L+
Sbjct: 125 RVALRNGRRDANEQLKKMEKDSELTEDDLKQAQEEVQKITDKFNKQVDEMLVKKELEILE 184
Query: 276 V 276
V
Sbjct: 185 V 185
>sp|Q1AW65|RRF_RUBXD Ribosome-recycling factor OS=Rubrobacter xylanophilus (strain DSM
9941 / NBRC 16129) GN=frr PE=3 SV=1
Length = 186
Score = 191 bits (484), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 88/178 (49%), Positives = 132/178 (74%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + RM+ ++ VR F ++RTGR+NPA+LD+IEVE YG+ + +KS+A I P+ L I
Sbjct: 9 DAERRMKGALEAVRHQFATIRTGRANPALLDRIEVEAYGTRMPIKSVASIGAPEPRLLTI 68
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
PYD + LK+IE+AI SDLG+ P NDG++IRL +P+LT ERR+EL ++V AEEG+V+
Sbjct: 69 TPYDPNLLKTIERAIRDSDLGLNPQNDGKIIRLPIPELTEERRRELIRLVRHMAEEGRVS 128
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRN+RRD + ++L++E ++SED+ + ++LQKLTD Y+K+ID +KE EL++V
Sbjct: 129 VRNVRRDEMHDIQRLRREGEISEDDERRAEAELQKLTDAYIKRIDEALAEKEAELMEV 186
>sp|Q3ALP8|RRF_SYNSC Ribosome-recycling factor OS=Synechococcus sp. (strain CC9605)
GN=frr PE=3 SV=1
Length = 182
Score = 190 bits (483), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 88/179 (49%), Positives = 133/179 (74%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
+D++A M ++++ + NFN++RTGR+N ++LD+I VEYYG+ LKS+A ++TPDS ++
Sbjct: 4 QDLEASMRKSVEATQRNFNTIRTGRANSSLLDRISVEYYGAETPLKSLATLSTPDSQTIQ 63
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D S+L SIEKAI S+LG TPNNDG++IR+ +P LT ERRKE K+ +K AEEGKV
Sbjct: 64 IQPFDISALASIEKAIAMSELGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKV 123
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RN+RRDA+ +K +KE + SED +D +QK D+++ +++ KE ++LKV
Sbjct: 124 ALRNLRRDAIDKIKKQEKEGEFSEDQSRDEQDGVQKTLDKFIAELEKHLASKEADILKV 182
>sp|A2BVI3|RRF_PROM5 Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT
9515) GN=frr PE=3 SV=1
Length = 182
Score = 190 bits (483), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 92/180 (51%), Positives = 136/180 (75%)
Query: 97 EKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSL 156
E+++++ M ++++ + NFN++RTGR+N ++LD+I VEYYG+ +KS+A I T DS ++
Sbjct: 3 EQEIQSSMNKSVEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLASIATVDSQTI 62
Query: 157 LIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
IQP+D S L++IEKAI SDLG+TPNNDG+VIR+ +P LT ERRKE K+ +K AEEGK
Sbjct: 63 SIQPFDISCLQAIEKAISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGK 122
Query: 217 VAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VA+RNIRRDA+ +K +KE +S D +D ++QK TD+Y+ I++ +KEKE+LKV
Sbjct: 123 VALRNIRRDAVDKEKKDEKEGLISIDESRDNQLEIQKFTDKYISLIETKLSEKEKEILKV 182
>sp|Q7NNX0|RRF_GLOVI Ribosome-recycling factor OS=Gloeobacter violaceus (strain PCC
7421) GN=frr PE=3 SV=1
Length = 182
Score = 190 bits (483), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 90/173 (52%), Positives = 130/173 (75%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
M + I+ NF ++RTGR++ ++LD+I VEYYG P LK++A I TPD+S++LIQPYD
Sbjct: 10 MRKAIEATAGNFATIRTGRASTSLLDRINVEYYGQPTPLKTLATITTPDASTVLIQPYDP 69
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
SSL+ IEK I+ SDLG+ P+NDG+ IRL +P LT+ERRK+L KV+ AEEG+VAVRNIR
Sbjct: 70 SSLRLIEKTILESDLGLPPSNDGKTIRLNIPPLTAERRKDLVKVLRNLAEEGRVAVRNIR 129
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
R A+ K +K+ K+SED + L ++QKLTD+ +++I+ +++ KEKE+ V
Sbjct: 130 RHAIDEVRKEEKDAKVSEDEARRLQDEVQKLTDKSIQQIEKLFEAKEKEITTV 182
>sp|A8G3N6|RRF_PROM2 Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT
9215) GN=frr PE=3 SV=1
Length = 182
Score = 189 bits (481), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 91/180 (50%), Positives = 138/180 (76%)
Query: 97 EKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSL 156
EK+++ M ++I+ + NFN++RTGR+N ++LD++ V+YYG+ +KS+A I+T DS ++
Sbjct: 3 EKEIQENMNKSIEATQRNFNTIRTGRANASLLDRVSVDYYGAETPIKSLATISTIDSQTI 62
Query: 157 LIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
IQP+D S L++IEK+I SDLG+TPNNDG+VIR+ +P LT ERRKE K+ +K AEEGK
Sbjct: 63 SIQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGK 122
Query: 217 VAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VA+RNIRRDA+ +K +K+ +S D +D S++QK+TD+Y+ I++ +KEKE+LKV
Sbjct: 123 VALRNIRRDAVDKEKKDEKDGLISIDESRDNQSEIQKITDKYIALIETKLSEKEKEILKV 182
>sp|Q9KA66|RRF_BACHD Ribosome-recycling factor OS=Bacillus halodurans (strain ATCC
BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=frr PE=3 SV=3
Length = 185
Score = 189 bits (481), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 91/178 (51%), Positives = 133/178 (74%)
Query: 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
D + RM + + + +R GR+NPAMLD+I VEYYG+ L +A I+ P++ L+I
Sbjct: 8 DAEQRMTKATEALGRELAKLRAGRANPAMLDRITVEYYGAETPLNQLATISVPEARLLVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
QP+DKSS+ IE+AI SDLG+TP+NDG VIR+T+P LT ERR++L+K+V K AEE KVA
Sbjct: 68 QPFDKSSISDIERAIQKSDLGLTPSNDGTVIRITIPPLTEERRRDLTKLVKKSAEEAKVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VRNIRRDA +K QK+ +L+ED+++ ++ D+QKLTD+Y+++ID + KEKE+++V
Sbjct: 128 VRNIRRDANDDLKKRQKDGELTEDDLRRVTEDVQKLTDKYIEQIDQKAEAKEKEIMEV 185
>sp|B0THE0|RRF_HELMI Ribosome-recycling factor OS=Heliobacterium modesticaldum (strain
ATCC 51547 / Ice1) GN=frr PE=3 SV=1
Length = 185
Score = 189 bits (480), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 137/183 (74%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
+ I+K+ + +M++T++ +R + +R GR+NPA+L+K+ VEYYG+P + +A I+ P++
Sbjct: 3 NEIKKETEDKMKKTVEALRKEYQHIRAGRANPALLEKVTVEYYGAPTPVNQLANISAPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
L+IQP+DKS L ++EKAI+ SDLG+TP +DG VIRL +PQLT ERR EL K V K+AE
Sbjct: 63 RLLVIQPWDKSVLPALEKAILKSDLGLTPTSDGAVIRLVIPQLTQERRSELVKTVKKRAE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
E +V +RN+RRDA + + LQKE +SED K ++QKLTD+Y++++D + ++KE E+
Sbjct: 123 EHRVILRNLRRDANEDVKDLQKEHIISEDEGKRAQEEIQKLTDKYIREVDQVAERKEAEI 182
Query: 274 LKV 276
++V
Sbjct: 183 MEV 185
>sp|A8MHH2|RRF_ALKOO Ribosome-recycling factor OS=Alkaliphilus oremlandii (strain
OhILAs) GN=frr PE=3 SV=1
Length = 185
Score = 189 bits (479), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 89/184 (48%), Positives = 137/184 (74%)
Query: 93 KSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPD 152
K I K+++ +M +TI+ ++ S+R GR+NPAMLD+I VEYYGSP +K IA I P+
Sbjct: 2 KMEIHKNLEEKMNKTINALKDELASIRAGRANPAMLDRIVVEYYGSPTPIKQIAAITAPE 61
Query: 153 SSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQA 212
+ IQPYD S+L SIEKAI+ SDLG+ P+NDG++IR+ +PQLT ERRKEL+KV K +
Sbjct: 62 PRIISIQPYDGSALSSIEKAILQSDLGVNPSNDGKLIRIIVPQLTEERRKELTKVAKKTS 121
Query: 213 EEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKE 272
E+ KV +RN RR+A +K+QK+ +++ED +K ++QK+TD+++K +D + ++KEK+
Sbjct: 122 EDAKVVLRNERRNANDRLKKMQKDNEITEDELKTAQDEVQKITDKFIKMVDELTEKKEKD 181
Query: 273 LLKV 276
+++V
Sbjct: 182 IMEV 185
>sp|Q67PB4|RRF_SYMTH Ribosome-recycling factor OS=Symbiobacterium thermophilum (strain T
/ IAM 14863) GN=frr PE=3 SV=1
Length = 185
Score = 188 bits (478), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 89/181 (49%), Positives = 135/181 (74%)
Query: 96 IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
I KD + RM++ +++ R +R R+ PA+LDK+ VE YGS V + ++A I PD +
Sbjct: 5 IIKDAEERMKKAVEVFRQELAGMRANRATPALLDKVRVEAYGSEVPVNNVATIEVPDPRT 64
Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
L+I+P+D+S +K+IE+AI +SDLG+ P NDG+VIRL++P +T ERR+EL KVVAK+ EE
Sbjct: 65 LVIKPWDRSLIKAIERAINASDLGLNPTNDGQVIRLSIPPMTEERRRELVKVVAKRTEEQ 124
Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
+VA+RNIRRDA + +KL+K+K +SED K ++QKLTD+Y+K++D + KEKE+++
Sbjct: 125 RVAIRNIRRDANEQIKKLEKDKAVSEDESKRAQDEVQKLTDKYIKEVDQLMAAKEKEIME 184
Query: 276 V 276
V
Sbjct: 185 V 185
>sp|A5GJE9|RRF_SYNPW Ribosome-recycling factor OS=Synechococcus sp. (strain WH7803)
GN=frr PE=3 SV=1
Length = 182
Score = 188 bits (477), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 87/180 (48%), Positives = 132/180 (73%)
Query: 97 EKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSL 156
+ D+++ M ++++ + NFN++RTGR+N ++LD+I VEYYG+ LKS+A ++TPDS ++
Sbjct: 3 QSDLESSMRKSVEATQRNFNTIRTGRANSSLLDRISVEYYGAETPLKSLATLSTPDSQTI 62
Query: 157 LIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
IQP+D S+L IEKAI S+LG TPNNDG+VIR+ +P LT ERRKE K+ +K AEEGK
Sbjct: 63 QIQPFDISALALIEKAIAMSELGFTPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGK 122
Query: 217 VAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VA+RN+RRDA+ +K +KE + SED +D +QK D+++ +++ KE ++LKV
Sbjct: 123 VALRNLRRDAIDKIKKQEKEGEFSEDQSRDAQDSVQKTLDKFIAEVEQHLATKEADILKV 182
>sp|Q7U5F4|RRF_SYNPX Ribosome-recycling factor OS=Synechococcus sp. (strain WH8102)
GN=frr PE=3 SV=1
Length = 182
Score = 187 bits (476), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 87/179 (48%), Positives = 132/179 (73%)
Query: 98 KDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLL 157
+D++A M ++++ + NFN++RTGR+N ++LD+I VEYYG+ LKS+A ++TPDS ++
Sbjct: 4 QDLEASMRKSVEATQRNFNTIRTGRANSSLLDRISVEYYGAETPLKSLATLSTPDSQTIQ 63
Query: 158 IQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
IQP+D S+L SIEKAI S+LG TPNNDG++IR+ +P LT ERRKE K+ +K AEEGKV
Sbjct: 64 IQPFDISALASIEKAIAMSELGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKV 123
Query: 218 AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
A+RN+RRDA+ +K +K+ SED +D +QK D+++ +++ KE ++LKV
Sbjct: 124 ALRNLRRDAIDKVKKQEKDGDFSEDQSRDEQDAVQKTLDKFIAELEKHLADKEADILKV 182
>sp|Q31C13|RRF_PROM9 Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT
9312) GN=frr PE=3 SV=1
Length = 182
Score = 187 bits (476), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 90/180 (50%), Positives = 138/180 (76%)
Query: 97 EKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSL 156
E++++ M ++I+ + NFN++RTGR+N ++LD+I VEYYG+ +KS+A I+T DS ++
Sbjct: 3 EQEIQENMNKSIEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLATISTVDSQTI 62
Query: 157 LIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
IQP+D S L++IEK+I SDLG+TPNNDG+VIR+ +P LT ERRKE K+ +K AEEGK
Sbjct: 63 SIQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGK 122
Query: 217 VAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
VA+RNIRRDA+ +K +K+ +S D +D S++QK+T++++ I++ +KEKE+LKV
Sbjct: 123 VALRNIRRDAVDKEKKDEKDGLISIDESRDNQSEIQKITNKFIALIETKLSEKEKEILKV 182
>sp|Q8DSY2|RRF_STRMU Ribosome-recycling factor OS=Streptococcus mutans serotype c
(strain ATCC 700610 / UA159) GN=frr PE=3 SV=1
Length = 185
Score = 187 bits (476), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 94/183 (51%), Positives = 128/183 (69%)
Query: 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
++I + K R E++ + F S+R GR+N ++LD+IEVEYYG P L +A I P++
Sbjct: 3 NAIVEKAKERFEQSHQSLAREFGSIRAGRANASLLDRIEVEYYGVPTPLNQLASITVPEA 62
Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
LL+ P+DKSSLK IE AI +SD+G+ P NDG VIRL +P LT E RKEL+K V K E
Sbjct: 63 RVLLVSPFDKSSLKDIEHAINASDIGINPANDGSVIRLVIPALTEETRKELAKEVKKVGE 122
Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
KVA+RNIRRDA+ +K +K K+++ED +K L D+QK+TDE +K IDS+ KEKEL
Sbjct: 123 NAKVAIRNIRRDAMDEAKKQEKIKEITEDELKSLEKDIQKVTDEAVKHIDSMTANKEKEL 182
Query: 274 LKV 276
L+V
Sbjct: 183 LEV 185
>sp|A0AIB5|RRF_LISW6 Ribosome-recycling factor OS=Listeria welshimeri serovar 6b (strain
ATCC 35897 / DSM 20650 / SLCC5334) GN=frr PE=3 SV=1
Length = 185
Score = 187 bits (476), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 90/176 (51%), Positives = 129/176 (73%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +M++ + ++R GR+N ++LD++ V+YYG+P + +A I+ P++ LLI P
Sbjct: 10 KEKMDKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAPTPVNQMASISVPEARMLLITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDK+ L IEKAI+ SDLG+TPNNDG V+RL++PQLT ERRKEL K V K+AEE KVAVR
Sbjct: 70 YDKTVLGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRR+A + +KL+K ++ED+++ D+QKLTDE +K ID+I K KE E+L+V
Sbjct: 130 NIRREANEELKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDNITKDKEAEILEV 185
>sp|Q5L0J9|RRF_GEOKA Ribosome-recycling factor OS=Geobacillus kaustophilus (strain
HTA426) GN=frr PE=3 SV=1
Length = 185
Score = 187 bits (475), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 86/176 (48%), Positives = 133/176 (75%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +M++ + S+R GR+N +L+K+ V+YYG P + +A I+ P++ L+IQP
Sbjct: 10 KEKMDKAVQAFTRELASIRAGRANAGLLEKVTVDYYGVPTPINQLASISVPEARLLVIQP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
YDKS++K +EKAI++SDLG+TP+NDG VIRL +P LT ERR+EL+K+V K +E+ KVAVR
Sbjct: 70 YDKSAIKEMEKAILASDLGLTPSNDGSVIRLVIPPLTEERRRELAKLVKKYSEDAKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
NIRRDA +KL+K +++ED ++ + ++QKLTD+++ KID+I K+KEKE+++V
Sbjct: 130 NIRRDANDELKKLEKNGEITEDELRSYTDEVQKLTDDHIAKIDAITKEKEKEVMEV 185
>sp|Q831V2|RRF_ENTFA Ribosome-recycling factor OS=Enterococcus faecalis (strain ATCC
700802 / V583) GN=frr PE=3 SV=1
Length = 185
Score = 187 bits (475), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 88/176 (50%), Positives = 127/176 (72%)
Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
K +M + + +R +R GR+N ++LD+I+VEYYG+P + +A IN P++ L+I P
Sbjct: 10 KEKMTKAEESLRRELGQIRAGRANASLLDRIQVEYYGAPTPVNQLASINIPEARVLMITP 69
Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
+DK+S+ IEKAI SD+G++P NDG VIRL +PQLT ERRKEL+K V K+AE KVAVR
Sbjct: 70 FDKNSIADIEKAIQMSDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKEAENSKVAVR 129
Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
N+RRDA+ +K QK ++ED ++ D+QKLTD+ +K ID+I +KE+ELL+V
Sbjct: 130 NVRRDAMDELKKAQKNGDITEDELRSFEKDVQKLTDDSIKNIDAITAEKEQELLEV 185
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.126 0.338
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,126,728
Number of Sequences: 539616
Number of extensions: 3398095
Number of successful extensions: 17090
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 291
Number of HSP's that attempted gapping in prelim test: 15801
Number of HSP's gapped (non-prelim): 1393
length of query: 276
length of database: 191,569,459
effective HSP length: 116
effective length of query: 160
effective length of database: 128,974,003
effective search space: 20635840480
effective search space used: 20635840480
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)