Query 023857
Match_columns 276
No_of_seqs 130 out of 1055
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 07:09:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023857.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023857hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0233 Frr Ribosome recycling 100.0 1.1E-61 2.4E-66 422.3 21.2 182 95-276 6-187 (187)
2 PRK00083 frr ribosome recyclin 100.0 5.8E-60 1.3E-64 414.7 22.7 182 95-276 4-185 (185)
3 TIGR00496 frr ribosome recycli 100.0 6.4E-59 1.4E-63 405.3 20.5 175 102-276 2-176 (176)
4 cd00520 RRF Ribosome recycling 100.0 1.8E-57 4E-62 396.9 21.1 178 97-274 2-179 (179)
5 PF01765 RRF: Ribosome recycli 100.0 1.3E-51 2.8E-56 355.2 18.4 165 110-274 1-165 (165)
6 KOG4759 Ribosome recycling fac 100.0 4E-48 8.8E-53 351.2 20.5 213 61-276 49-263 (263)
7 PF12732 YtxH: YtxH-like prote 73.8 34 0.00074 25.4 8.3 32 194-225 21-52 (74)
8 KOG0100 Molecular chaperones G 71.3 34 0.00074 34.7 9.7 133 140-273 452-630 (663)
9 CHL00118 atpG ATP synthase CF0 71.1 38 0.00082 28.7 9.0 53 212-264 76-129 (156)
10 PF00430 ATP-synt_B: ATP synth 66.0 32 0.00069 27.5 7.2 72 202-273 43-115 (132)
11 PRK13461 F0F1 ATP synthase sub 65.1 61 0.0013 27.3 9.0 54 210-273 57-110 (159)
12 PF12685 SpoIIIAH: SpoIIIAH-li 64.8 38 0.00082 29.9 7.9 61 209-269 85-147 (196)
13 PRK05759 F0F1 ATP synthase sub 64.7 63 0.0014 26.9 9.0 21 209-229 55-75 (156)
14 PRK10780 periplasmic chaperone 64.6 90 0.0019 26.6 10.8 88 186-273 24-117 (165)
15 PRK07353 F0F1 ATP synthase sub 63.4 73 0.0016 26.1 9.0 26 247-272 84-109 (140)
16 PRK13454 F0F1 ATP synthase sub 63.1 62 0.0013 28.3 8.9 28 206-233 79-106 (181)
17 PRK14473 F0F1 ATP synthase sub 63.0 69 0.0015 27.2 9.0 22 210-231 60-81 (164)
18 PRK14475 F0F1 ATP synthase sub 60.8 77 0.0017 27.1 9.0 55 209-273 61-115 (167)
19 PRK13455 F0F1 ATP synthase sub 60.8 74 0.0016 27.6 9.0 21 212-232 81-101 (184)
20 PRK13460 F0F1 ATP synthase sub 60.4 78 0.0017 27.2 9.0 55 209-273 67-121 (173)
21 PF03480 SBP_bac_7: Bacterial 59.6 62 0.0013 29.5 8.7 66 195-260 218-284 (286)
22 PRK06231 F0F1 ATP synthase sub 59.3 78 0.0017 28.3 9.0 61 209-269 99-160 (205)
23 CHL00118 atpG ATP synthase CF0 59.1 75 0.0016 26.9 8.5 77 198-274 51-128 (156)
24 PRK08475 F0F1 ATP synthase sub 59.1 87 0.0019 27.0 9.0 55 208-272 72-126 (167)
25 PRK14472 F0F1 ATP synthase sub 59.1 86 0.0019 26.9 9.0 56 208-263 68-124 (175)
26 PRK07352 F0F1 ATP synthase sub 58.3 90 0.002 26.8 9.0 53 210-272 71-123 (174)
27 PRK13428 F0F1 ATP synthase sub 58.1 63 0.0014 32.3 9.0 74 199-272 31-105 (445)
28 PRK01919 tatB sec-independent 58.0 1E+02 0.0022 27.2 9.2 66 199-273 23-88 (169)
29 PRK13454 F0F1 ATP synthase sub 57.0 79 0.0017 27.6 8.5 75 199-273 61-136 (181)
30 TIGR01144 ATP_synt_b ATP synth 57.0 1.1E+02 0.0023 25.3 9.0 27 247-273 74-100 (147)
31 PRK09174 F0F1 ATP synthase sub 56.6 77 0.0017 28.4 8.5 66 208-273 103-169 (204)
32 PRK14471 F0F1 ATP synthase sub 56.4 1E+02 0.0023 26.0 9.0 23 210-232 60-82 (164)
33 PRK13453 F0F1 ATP synthase sub 56.3 1E+02 0.0022 26.6 9.0 56 208-263 68-124 (173)
34 CHL00019 atpF ATP synthase CF0 55.4 1E+02 0.0023 26.7 9.0 55 210-264 76-131 (184)
35 PRK14472 F0F1 ATP synthase sub 54.0 97 0.0021 26.6 8.5 75 199-273 48-123 (175)
36 PRK08476 F0F1 ATP synthase sub 53.8 1.3E+02 0.0028 25.2 9.0 19 211-229 60-78 (141)
37 PRK09174 F0F1 ATP synthase sub 53.2 1.1E+02 0.0024 27.3 9.0 75 199-273 83-158 (204)
38 PRK06231 F0F1 ATP synthase sub 53.0 96 0.0021 27.7 8.5 75 199-273 78-153 (205)
39 PRK13453 F0F1 ATP synthase sub 52.9 1.2E+02 0.0027 26.0 9.0 75 199-273 48-123 (173)
40 PRK08404 V-type ATP synthase s 50.2 1.3E+02 0.0028 24.0 9.6 30 203-232 3-32 (103)
41 CHL00019 atpF ATP synthase CF0 48.9 1.3E+02 0.0028 26.1 8.5 75 199-273 54-129 (184)
42 PRK06568 F0F1 ATP synthase sub 48.6 1.7E+02 0.0036 25.3 9.0 30 204-233 50-79 (154)
43 PRK13460 F0F1 ATP synthase sub 47.7 1.4E+02 0.003 25.6 8.5 55 204-264 69-123 (173)
44 TIGR03321 alt_F1F0_F0_B altern 47.4 1.5E+02 0.0032 27.0 9.0 21 211-231 58-78 (246)
45 PRK07352 F0F1 ATP synthase sub 47.2 1.4E+02 0.0031 25.5 8.5 55 205-265 73-127 (174)
46 PRK08476 F0F1 ATP synthase sub 47.0 1.6E+02 0.0034 24.6 8.5 60 198-263 80-139 (141)
47 PRK09173 F0F1 ATP synthase sub 46.7 1.8E+02 0.0038 24.5 8.9 29 206-234 50-78 (159)
48 PRK14473 F0F1 ATP synthase sub 46.5 1.6E+02 0.0034 25.0 8.5 28 245-272 85-112 (164)
49 PRK14474 F0F1 ATP synthase sub 45.8 1.6E+02 0.0035 27.1 9.0 51 211-271 58-108 (250)
50 PF03938 OmpH: Outer membrane 45.2 1.8E+02 0.0038 24.1 9.6 78 186-263 17-97 (158)
51 PRK13461 F0F1 ATP synthase sub 44.5 1.8E+02 0.0038 24.5 8.5 55 204-264 58-112 (159)
52 PRK14471 F0F1 ATP synthase sub 44.3 1.8E+02 0.0038 24.6 8.5 73 200-272 39-112 (164)
53 PRK05892 nucleoside diphosphat 44.0 1.9E+02 0.004 24.9 8.6 67 195-269 7-73 (158)
54 TIGR02609 doc_partner putative 43.9 76 0.0017 23.7 5.5 36 186-222 37-72 (74)
55 PRK13455 F0F1 ATP synthase sub 43.6 1.7E+02 0.0038 25.2 8.5 76 198-273 56-132 (184)
56 PF09388 SpoOE-like: Spo0E lik 43.2 1E+02 0.0022 20.8 5.5 40 217-260 4-43 (45)
57 PF05008 V-SNARE: Vesicle tran 43.0 1.3E+02 0.0027 22.2 6.6 34 193-226 15-48 (79)
58 PF07564 DUF1542: Domain of Un 42.4 1E+02 0.0022 22.5 5.9 31 194-224 10-40 (70)
59 PF07946 DUF1682: Protein of u 42.4 1.1E+02 0.0023 29.2 7.5 49 201-249 264-312 (321)
60 PF07464 ApoLp-III: Apolipopho 41.5 1.1E+02 0.0025 26.4 6.9 60 202-265 84-144 (155)
61 TIGR00587 nfo apurinic endonuc 40.7 1E+02 0.0022 28.3 6.9 72 145-216 27-98 (274)
62 PF10296 DUF2404: Putative int 39.2 51 0.0011 25.4 4.0 38 104-145 18-57 (91)
63 PF09851 SHOCT: Short C-termin 39.0 52 0.0011 20.6 3.3 26 226-251 4-29 (31)
64 PRK09173 F0F1 ATP synthase sub 38.9 2.3E+02 0.0051 23.7 8.5 36 199-234 32-67 (159)
65 PRK14475 F0F1 ATP synthase sub 38.6 2.4E+02 0.0052 24.0 8.5 26 205-230 64-89 (167)
66 PRK06568 F0F1 ATP synthase sub 38.5 2.6E+02 0.0056 24.1 9.0 74 199-272 34-108 (154)
67 PF00430 ATP-synt_B: ATP synth 38.1 1.6E+02 0.0036 23.3 7.1 64 210-273 40-104 (132)
68 PRK06569 F0F1 ATP synthase sub 37.8 2.7E+02 0.0059 24.1 9.9 52 210-267 69-120 (155)
69 PF14689 SPOB_a: Sensor_kinase 37.7 90 0.002 22.5 4.9 45 212-258 9-53 (62)
70 PF13865 FoP_duplication: C-te 37.7 79 0.0017 23.8 4.7 32 81-112 37-68 (74)
71 PF06518 DUF1104: Protein of u 37.1 1.4E+02 0.0031 23.7 6.3 59 198-262 24-83 (93)
72 TIGR01461 greB transcription e 35.8 2.6E+02 0.0056 23.9 8.2 68 194-268 3-70 (156)
73 PF15605 Toxin_52: Putative to 35.2 1.7E+02 0.0036 23.9 6.4 49 214-267 54-102 (103)
74 PF00804 Syntaxin: Syntaxin; 34.9 1.9E+02 0.0041 21.5 7.2 50 213-263 10-59 (103)
75 PRK05412 putative nucleotide-b 34.8 31 0.00068 30.2 2.4 33 161-193 100-132 (161)
76 KOG1664 Vacuolar H+-ATPase V1 33.7 2E+02 0.0043 26.4 7.3 52 216-273 11-62 (220)
77 PF00244 14-3-3: 14-3-3 protei 32.8 1.3E+02 0.0027 27.4 6.1 72 193-264 31-103 (236)
78 PF08182 Pedibin: Pedibin/Hym- 32.5 91 0.002 20.6 3.6 28 248-275 3-32 (35)
79 PF03179 V-ATPase_G: Vacuolar 32.3 2.5E+02 0.0053 22.0 9.2 26 245-270 65-90 (105)
80 TIGR03321 alt_F1F0_F0_B altern 31.3 3.2E+02 0.0068 24.9 8.5 26 246-271 83-108 (246)
81 PTZ00372 endonuclease 4-like p 31.2 1E+02 0.0023 30.7 5.7 71 144-215 156-227 (413)
82 PLN02372 violaxanthin de-epoxi 31.0 2.4E+02 0.0053 28.5 8.0 72 161-232 327-405 (455)
83 PRK05759 F0F1 ATP synthase sub 30.4 3.1E+02 0.0068 22.6 10.7 27 245-271 81-107 (156)
84 PRK08178 acetolactate synthase 29.7 1.7E+02 0.0036 23.5 5.6 61 151-213 6-74 (96)
85 PF05957 DUF883: Bacterial pro 29.6 2.6E+02 0.0056 21.4 7.3 34 200-233 10-43 (94)
86 TIGR02302 aProt_lowcomp conser 29.6 1.7E+02 0.0036 32.1 7.2 67 196-267 474-548 (851)
87 PF09440 eIF3_N: eIF3 subunit 29.4 1.6E+02 0.0035 24.7 5.8 54 193-246 63-125 (133)
88 PF00816 Histone_HNS: H-NS his 29.4 93 0.002 23.9 4.1 42 203-244 2-43 (93)
89 PRK13022 secF preprotein trans 29.3 2.5E+02 0.0054 26.4 7.6 63 148-210 37-102 (289)
90 PF04344 CheZ: Chemotaxis phos 28.5 4.4E+02 0.0095 23.7 9.5 64 196-275 90-153 (214)
91 PF07106 TBPIP: Tat binding pr 28.3 3E+02 0.0066 23.3 7.5 57 195-261 108-164 (169)
92 cd07651 F-BAR_PombeCdc15_like 28.2 3.5E+02 0.0075 24.2 8.1 29 240-268 169-197 (236)
93 PRK08475 F0F1 ATP synthase sub 26.8 4.1E+02 0.0088 22.8 8.5 27 205-231 76-102 (167)
94 PF00804 Syntaxin: Syntaxin; 26.4 2.7E+02 0.0059 20.6 8.9 57 199-260 45-101 (103)
95 COG1638 DctP TRAP-type C4-dica 25.9 4E+02 0.0088 25.5 8.5 133 123-261 160-314 (332)
96 PRK01885 greB transcription el 25.5 4.3E+02 0.0093 22.6 8.3 67 195-268 6-72 (157)
97 smart00503 SynN Syntaxin N-ter 25.2 3.2E+02 0.0069 21.0 7.0 25 211-236 9-33 (117)
98 PF12298 Bot1p: Eukaryotic mit 25.1 2E+02 0.0044 25.2 5.8 64 191-266 12-82 (172)
99 PRK11166 chemotaxis regulator 24.8 4.5E+02 0.0097 24.0 8.1 64 196-275 102-165 (214)
100 PF10281 Ish1: Putative stress 23.8 46 0.00099 21.7 1.2 20 191-211 18-37 (38)
101 PF05529 Bap31: B-cell recepto 23.0 1.7E+02 0.0038 25.3 5.1 11 243-253 162-172 (192)
102 PF10835 DUF2573: Protein of u 22.9 25 0.00055 27.3 -0.2 32 103-134 3-34 (82)
103 KOG3130 Uncharacterized conser 22.4 1.9E+02 0.0042 29.2 5.6 67 205-271 81-149 (514)
104 PF03982 DAGAT: Diacylglycerol 22.3 97 0.0021 29.4 3.5 21 248-268 261-281 (297)
105 COG0711 AtpF F0F1-type ATP syn 22.1 5E+02 0.011 22.1 10.0 32 241-272 90-121 (161)
106 PF04695 Pex14_N: Peroxisomal 22.0 69 0.0015 26.7 2.2 46 200-252 1-48 (136)
107 PF09726 Macoilin: Transmembra 22.0 2.4E+02 0.0053 30.1 6.7 43 214-256 538-580 (697)
108 PF03179 V-ATPase_G: Vacuolar 21.6 3.9E+02 0.0086 20.8 8.0 35 241-275 69-103 (105)
109 PF10168 Nup88: Nuclear pore c 21.6 5.9E+02 0.013 27.3 9.5 63 195-257 532-594 (717)
110 PRK01919 tatB sec-independent 21.5 5.7E+02 0.012 22.6 7.8 60 203-267 34-93 (169)
111 cd07649 F-BAR_GAS7 The F-BAR ( 21.5 6.2E+02 0.013 23.0 10.5 29 237-265 149-177 (233)
112 PRK00311 panB 3-methyl-2-oxobu 21.4 1.9E+02 0.0041 27.1 5.2 48 165-214 118-173 (264)
113 PF03449 GreA_GreB_N: Transcri 21.2 3.6E+02 0.0079 20.2 8.6 66 196-268 6-71 (74)
114 cd07674 F-BAR_FCHO1 The F-BAR 21.1 6.4E+02 0.014 23.0 9.8 28 239-266 147-174 (261)
115 cd02646 R3H_G-patch R3H domain 21.1 1.2E+02 0.0026 21.5 3.1 22 190-211 18-39 (58)
116 PF10498 IFT57: Intra-flagella 21.0 7.9E+02 0.017 24.0 9.9 65 199-270 223-287 (359)
117 PF11068 YlqD: YlqD protein; 21.0 5E+02 0.011 21.8 10.4 67 195-271 12-78 (131)
118 PRK11546 zraP zinc resistance 20.8 5.4E+02 0.012 22.1 10.8 63 195-262 43-109 (143)
119 cd06557 KPHMT-like Ketopantoat 20.7 1.8E+02 0.0039 27.0 4.9 50 165-214 115-170 (254)
120 PF14591 AF0941-like: AF0941-l 20.4 2.8E+02 0.0062 23.4 5.4 53 222-275 42-97 (127)
121 PF13801 Metal_resist: Heavy-m 20.3 3.8E+02 0.0083 20.1 11.2 69 194-266 40-111 (125)
No 1
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-61 Score=422.28 Aligned_cols=182 Identities=55% Similarity=0.911 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHHHHH
Q 023857 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIV 174 (276)
Q Consensus 95 ~i~~~~~~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~kAI~ 174 (276)
.++++++++|++++++|+++|++|||||+||++||+|.|+|||.++||++||+|+++++|+|+|+|||++++++|++||.
T Consensus 6 ~i~~~~e~kM~k~~e~l~~~l~~iRTGRanp~lld~i~VeyYG~~tPl~qvAsIsvpe~r~l~I~p~Dks~~~~IekaI~ 85 (187)
T COG0233 6 EILKDAEEKMEKALEALKNELSKIRTGRANPSLLDRITVEYYGSPTPLNQLASISVPEARTLVIKPFDKSMVKAIEKAIL 85 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHhcceeeeecCCCCcHHHHhhccCCCcceEEeecCccchHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHH
Q 023857 175 SSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKL 254 (276)
Q Consensus 175 ~S~LglnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkl 254 (276)
+|||||||.+||++|||+||+||+|+|++|+|.|++++|++|++|||||||+++.+||++|++.||||++++++++||++
T Consensus 86 ~snLglnP~~dG~~IRv~~P~lTeErRkelvK~~k~~~EeakvaiRniRrda~d~iKK~~K~~~isEDe~k~~e~~iQKl 165 (187)
T COG0233 86 ASNLGLNPNNDGNVIRVPLPPLTEERRKELVKVAKKYAEEAKVAVRNIRRDANDKIKKLEKDKEISEDEVKKAEEEIQKL 165 (187)
T ss_pred HcCCCCCcCcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcC
Q 023857 255 TDEYMKKIDSIYKQKEKELLKV 276 (276)
Q Consensus 255 td~~ik~iD~l~k~KeKEll~v 276 (276)
||+|+++||++++.||||||+|
T Consensus 166 Td~yi~~iD~~~~~KEkEim~v 187 (187)
T COG0233 166 TDEYIKKIDELLKDKEKEIMEV 187 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999986
No 2
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=100.00 E-value=5.8e-60 Score=414.71 Aligned_cols=182 Identities=55% Similarity=0.894 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHHHHH
Q 023857 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIV 174 (276)
Q Consensus 95 ~i~~~~~~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~kAI~ 174 (276)
.++.+++++|++++++|+.+|+++|+||+||++||+|.|+|||+++||++||+|++++|++|+|+|||++++++|++||+
T Consensus 4 ~~~~~~~~~m~kai~~l~~~l~~irtGra~p~lld~I~V~~yg~~~pL~~lA~Isv~~~~~l~I~p~D~~~i~~I~kAI~ 83 (185)
T PRK00083 4 EILKDAEERMEKAVEALKRELAKIRTGRANPSLLDGIKVDYYGSPTPLNQVASISVPEARTLLIQPWDKSMLKAIEKAIR 83 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHcCCeEEEECCCCccHHHceeeecCCCCEEEEEeCCHhHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHH
Q 023857 175 SSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKL 254 (276)
Q Consensus 175 ~S~LglnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkl 254 (276)
+|||||||++||++|+|+||+||+|+|++++|.|++++|+||++|||||+++++.+|+++|++.+|||++++++++||++
T Consensus 84 ~s~lgl~P~~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~iKk~~k~~~iseD~~k~~e~eiQkl 163 (185)
T PRK00083 84 ASDLGLNPSNDGTVIRLPIPPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKLKKLEKDKEISEDELKRAEDEIQKL 163 (185)
T ss_pred HCCCCCCcccCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcC
Q 023857 255 TDEYMKKIDSIYKQKEKELLKV 276 (276)
Q Consensus 255 td~~ik~iD~l~k~KeKEll~v 276 (276)
||+|+++||+++++||||||+|
T Consensus 164 td~~i~~id~~~~~Kekeim~v 185 (185)
T PRK00083 164 TDKYIKKIDELLAAKEKEIMEV 185 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999986
No 3
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=100.00 E-value=6.4e-59 Score=405.26 Aligned_cols=175 Identities=55% Similarity=0.907 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHHHHHhCCCCCC
Q 023857 102 ARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMT 181 (276)
Q Consensus 102 ~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~kAI~~S~Lgln 181 (276)
++|++++++|+++|+++|+||+||++||+|.|+|||+++||++||||+++++++|+|+|||++++++|++||.+||||||
T Consensus 2 ~~M~k~i~~~~~~l~~irtGra~p~ild~I~V~~yg~~~pL~~lA~vsv~~~~~l~I~p~D~~~~~~I~kAI~~s~lgln 81 (176)
T TIGR00496 2 ERMDKSIQALKRELSKIRTGRANPSLLDRILVEYYGAPTPLRQLASVTVPDARTLVIQPFDKSNINAIEKAIQRSDLGLN 81 (176)
T ss_pred chHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEecCChhhHHHHHHHHHHCCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHH
Q 023857 182 PNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKK 261 (276)
Q Consensus 182 Pq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~ 261 (276)
|++||++|+|+||+||+|+|++++|.|++++|+||++|||||+++++++|+++|++.+|||+.++++++||++||+|+++
T Consensus 82 P~~dg~~Iri~iP~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~iKk~~k~~~iseD~~k~~~~~iQkltd~~i~~ 161 (176)
T TIGR00496 82 PNNDGSVIRVNFPPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDKVKKLEKDKEISEDEERRLQEEIQKLTDEYIKK 161 (176)
T ss_pred cccCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcC
Q 023857 262 IDSIYKQKEKELLKV 276 (276)
Q Consensus 262 iD~l~k~KeKEll~v 276 (276)
||+++++||||||+|
T Consensus 162 id~~~~~Kekeim~v 176 (176)
T TIGR00496 162 IDEILKDKEKELMEV 176 (176)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999986
No 4
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=100.00 E-value=1.8e-57 Score=396.93 Aligned_cols=178 Identities=58% Similarity=0.919 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHHHHHhC
Q 023857 97 EKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSS 176 (276)
Q Consensus 97 ~~~~~~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~kAI~~S 176 (276)
+++++++|++++++|+++|+++|+||+||++||+|.|+|||+++||++||||+++|+++|+|+|||++++++|++||++|
T Consensus 2 ~~~~~~~m~k~i~~~~~~l~~irtGrasp~lld~I~V~~yg~~~pL~~lA~Vsv~~~~~l~I~p~D~~~i~~I~kAI~~s 81 (179)
T cd00520 2 LKEAKEKMEKSLEALKEELNKIRTGRANPALLDSITVEYYGAPTPLNQLASISVPEPRTIVINPFDKSAIKAIEKAILNS 81 (179)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEeecchhhHHHHHHHHHHC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHH
Q 023857 177 DLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTD 256 (276)
Q Consensus 177 ~LglnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd 256 (276)
|||+||++||++|+|+||+||+|+|++++|.|++.+|+||++|||||+++++.++++++++.+|||++++++++||++||
T Consensus 82 ~l~l~P~~dg~~iri~iP~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~lKk~~k~~~iseD~~k~~~~~iqkltd 161 (179)
T cd00520 82 DLGLNPNNDGAVIRVNLPPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKIKKLEKEKEISEDEVKKAEEDLQKLTD 161 (179)
T ss_pred CCCCCcCcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 023857 257 EYMKKIDSIYKQKEKELL 274 (276)
Q Consensus 257 ~~ik~iD~l~k~KeKEll 274 (276)
+|+++||++++.||||||
T Consensus 162 ~~i~~id~~~~~Kekeim 179 (179)
T cd00520 162 EYIKKIDELLKSKEKELL 179 (179)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 999999999999999997
No 5
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=100.00 E-value=1.3e-51 Score=355.23 Aligned_cols=165 Identities=55% Similarity=0.868 Sum_probs=160.5
Q ss_pred HHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHHHHHhCCCCCCccCCCCeE
Q 023857 110 MVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVI 189 (276)
Q Consensus 110 ~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~kAI~~S~LglnPq~Dg~~I 189 (276)
+|+++|+++|+||+||++||+|+|++||.++||++||||+++|+++|+|+|||++++++|++||++|+|||||+.||++|
T Consensus 1 ~~~~~l~~ir~gr~~p~~ld~i~V~~~g~~~~L~~lA~V~~~~~~~l~I~~~d~~~i~~I~kAI~~s~l~l~p~~d~~~i 80 (165)
T PF01765_consen 1 HFKEELSKIRTGRANPAILDNIKVEYYGSKVPLNELAQVSVKDPRTLVITPYDPSLIKAIEKAIQKSNLNLNPQNDGNTI 80 (165)
T ss_dssp HHHHHHHTSSSSSSSGGGGTTSEEEETTEEEEGGGTEEEEEEETTEEEEEESSTTHHHHHHHHHHHTTSSSEEEEETTEE
T ss_pred ChHHHHHHHhcCCCCHHHhCCeEEEECCCCccHHHceeeecCCCCEEEEEeccccchHHHHHHHHHCCCCCCcccCCcEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023857 190 RLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQK 269 (276)
Q Consensus 190 ~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~l~k~K 269 (276)
+|+||+||+|+|++++|.|++++|+||++||++|++++++++++++++.+|+|+.++++++||++||+|++++|++++.|
T Consensus 81 ~v~iP~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~k 160 (165)
T PF01765_consen 81 RVPIPPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKLKKLKKSKEISEDDIKKLEKEIQKLTDKYIKKIDELLKKK 160 (165)
T ss_dssp EEE--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhh
Q 023857 270 EKELL 274 (276)
Q Consensus 270 eKEll 274 (276)
|||||
T Consensus 161 ekell 165 (165)
T PF01765_consen 161 EKELL 165 (165)
T ss_dssp HHHHC
T ss_pred HHhhC
Confidence 99997
No 6
>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-48 Score=351.17 Aligned_cols=213 Identities=38% Similarity=0.594 Sum_probs=189.7
Q ss_pred ccccCchhhHhhhhhhccCCc-cccchhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCcc
Q 023857 61 VKLSNKPIVVRQLAHKRNGVV-RCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSP 139 (276)
Q Consensus 61 ~~fs~~~~~~kk~~~~k~~~~-~~~~~ee~~~~~~~i~~~~~~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~ 139 (276)
+.|+.+ .++|+.+-++.+.. .....++.+.+...++.++..+|+++++.|+++|+++++||+||.+||.|.|+++|.+
T Consensus 49 ~~~~R~-~~~kkak~k~~~~~~~~~~in~~~~e~~~~~~~~~sqmek~ie~lke~~~k~~~gr~~~~~~d~I~vk~~g~~ 127 (263)
T KOG4759|consen 49 RVFHRS-FLQKKAKLKKKKHDHGTEKINEAELEENAVEAKANSQMEKTIEALKEDFNKIRQGRFNPGMLDKIVVKANGPK 127 (263)
T ss_pred hhhhHH-HHHHHhhccccccCCchhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhheeeecCCCc
Confidence 444444 44444322233333 4444555555566678899999999999999999999999999999999999999999
Q ss_pred ccccceeeeecCCCcEEEEeecC-CCcHHHHHHHHHhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 023857 140 VSLKSIAQINTPDSSSLLIQPYD-KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218 (276)
Q Consensus 140 ~pL~~lAqVsv~~~~tL~I~p~D-~s~ik~I~kAI~~S~LglnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~ 218 (276)
+||++|||||.+|+++|+|+||| |..+++|++||++|+||+||++||.+|+|+|||+|.|+|++|+|.+++++|++|++
T Consensus 128 ~~L~~IA~vS~K~p~~ilIn~~d~p~~ikai~kAI~~S~lnltP~~dg~~l~vsiP~~T~E~Re~laK~~~~~~ee~K~s 207 (263)
T KOG4759|consen 128 RPLNEIAQVSLKGPQTILINPFDFPVDIKAILKAIEASGLNLTPNLDGTVLRVSIPPVTKESREKLAKVLKRYFEEYKQS 207 (263)
T ss_pred ccHHHHHHHhcCCCceEEEecccCchHHHHHHHHHHhCCCCCCcCCCCcEEEecCCCcChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 023857 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276 (276)
Q Consensus 219 IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~l~k~KeKEll~v 276 (276)
||++|+++++.+++.++ .+++|+++++++++|+++|+|++++|++|+.||||||..
T Consensus 208 lr~ir~~~~kk~~k~~~--~~~~D~vkkae~~l~~l~k~~v~~ld~llkskeKellk~ 263 (263)
T KOG4759|consen 208 LRKIRTKSIKKSKKNKK--SLSEDEVKKAEAELQKLAKDAVNKLDDLLKSKEKELLKQ 263 (263)
T ss_pred HHHHHHHHHHHHHhccc--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999887653 399999999999999999999999999999999999863
No 7
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=73.75 E-value=34 Score=25.37 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023857 194 PQLTSERRKELSKVVAKQAEEGKVAVRNIRRD 225 (276)
Q Consensus 194 P~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~ 225 (276)
|+--+|.|+++...+..+.+.++....+++..
T Consensus 21 P~sG~e~R~~l~~~~~~~~~~~~~~~~~~~~~ 52 (74)
T PF12732_consen 21 PKSGKETREKLKDKAEDLKDKAKDLYEEAKEK 52 (74)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888888777776666665555554443
No 8
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=71.30 E-value=34 Score=34.67 Aligned_cols=133 Identities=22% Similarity=0.307 Sum_probs=74.9
Q ss_pred ccccceeeeecCCCcEEEEeecC--CCcHHHHHHHHHhCCC-CCCccCCC--------------------------C--e
Q 023857 140 VSLKSIAQINTPDSSSLLIQPYD--KSSLKSIEKAIVSSDL-GMTPNNDG--------------------------E--V 188 (276)
Q Consensus 140 ~pL~~lAqVsv~~~~tL~I~p~D--~s~ik~I~kAI~~S~L-glnPq~Dg--------------------------~--~ 188 (276)
+.=++|=+...-+..|+.|++|+ ..+.+. ..-+-.-+| |+-|-.-| + .
T Consensus 452 TkKSQvFsTa~DnQ~tV~I~vyEGER~mtkd-n~lLGkFdltGipPAPRGvpqIEVtFevDangiL~VsAeDKgtg~~~k 530 (663)
T KOG0100|consen 452 TKKSQVFSTAQDNQPTVTIQVYEGERPMTKD-NHLLGKFDLTGIPPAPRGVPQIEVTFEVDANGILQVSAEDKGTGKKEK 530 (663)
T ss_pred ccccceeeecccCCceEEEEEeecccccccc-ccccccccccCCCCCCCCCccEEEEEEEccCceEEEEeeccCCCCcce
Confidence 33467777778888999999997 344443 222333343 44443221 1 2
Q ss_pred EEEe--CCCCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-----hhcCCCChhhhhhhHHHHHHHHH
Q 023857 189 IRLT--LPQLTSERRKELSKVVAKQAEEGK-----VAVRNIRRDALKAYEKL-----QKEKKLSEDNVKDLSSDLQKLTD 256 (276)
Q Consensus 189 I~V~--iP~lT~E~R~~lvK~aKk~~E~aK-----v~IRniR~~~~k~ikkl-----~K~k~iseD~~k~~~k~IQkltd 256 (276)
|.|+ =-++|+|--+.|++.|.+++|+-| +.-||-=..+--.+|.. +-.+.+++||-..++.-++...+
T Consensus 531 itItNd~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkekLg~Kl~~edKe~~e~av~e~~e 610 (663)
T KOG0100|consen 531 ITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEKLGGKLSDEDKETIEDAVEEALE 610 (663)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhHhcccCChhHHHHHHHHHHHHHH
Confidence 2222 258999999999999999999743 34444333332222211 11247888887777666655443
Q ss_pred HH---HHHHHHHHHHHHhhh
Q 023857 257 EY---MKKIDSIYKQKEKEL 273 (276)
Q Consensus 257 ~~---ik~iD~l~k~KeKEl 273 (276)
-. ..-..+-|++|.|||
T Consensus 611 WL~~n~~a~~Ee~~ek~kel 630 (663)
T KOG0100|consen 611 WLESNQDASKEEFKEKKKEL 630 (663)
T ss_pred HHhhcccccHHHHHHHHHHH
Confidence 21 112223455555555
No 9
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=71.14 E-value=38 Score=28.71 Aligned_cols=53 Identities=19% Similarity=0.316 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC-CCChhhhhhhHHHHHHHHHHHHHHHHH
Q 023857 212 AEEGKVAVRNIRRDALKAYEKLQKEK-KLSEDNVKDLSSDLQKLTDEYMKKIDS 264 (276)
Q Consensus 212 ~E~aKv~IRniR~~~~k~ikkl~K~k-~iseD~~k~~~k~IQkltd~~ik~iD~ 264 (276)
.++++..+...|..+.+.+.....+. ...++....++++.+.+.++...+|+.
T Consensus 76 ~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ 129 (156)
T CHL00118 76 TKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEATKQLEA 129 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333322111 122333334444444444444444443
No 10
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=65.96 E-value=32 Score=27.54 Aligned_cols=72 Identities=18% Similarity=0.267 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023857 202 KELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEK-KLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273 (276)
Q Consensus 202 ~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k-~iseD~~k~~~k~IQkltd~~ik~iD~l~k~KeKEl 273 (276)
++..+.+....+++...+.+.|.++...++....+. .+-+......+++++.+.++...+|+..-..-.++|
T Consensus 43 ~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~~~~~~~a~~~i~~e~~~a~~~l 115 (132)
T PF00430_consen 43 EELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEAERIIEQAEAEIEQEKEKAKKEL 115 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666677777776665554432211 223444555666666666666666665555444444
No 11
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=65.07 E-value=61 Score=27.35 Aligned_cols=54 Identities=13% Similarity=0.178 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023857 210 KQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273 (276)
Q Consensus 210 k~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~l~k~KeKEl 273 (276)
+..++++..+...|.++...+... ....+...+.+.++.-.+++.+......+|
T Consensus 57 ~~~~e~~~~l~~a~~ea~~ii~~a----------~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i 110 (159)
T PRK13461 57 ELKLKNERELKNAKEEGKKIVEEY----------KSKAENVYEEIVKEAHEEADLIIERAKLEA 110 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555544433332 233444444555555555555554444433
No 12
>PF12685 SpoIIIAH: SpoIIIAH-like protein; InterPro: IPR024232 Stage III sporulation protein AH (SpoIIIAH) is a protein that is involved in forespore engulfment. It forms a channel with SpoIIIAH that is open on the forespore end and closed (or gated) on the mother cell end. This allows sigma-E-directed gene expression in the mother-cell compartment of the sporangium to trigger the activation of sigma-G forespore-specific gene expression by a pathway of intercellular signaling. This family of proteins is found in bacteria, archaea and eukaryotes and so must have a wider function than in sporulation. Proteins in this family are typically between 174 and 223 amino acids in length.; PDB: 3UZ0_A 3TUF_A.
Probab=64.77 E-value=38 Score=29.90 Aligned_cols=61 Identities=20% Similarity=0.357 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHH--HHHHHHHH
Q 023857 209 AKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKK--IDSIYKQK 269 (276)
Q Consensus 209 Kk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~--iD~l~k~K 269 (276)
..++.++|...-..|...+..++.+-.+...|++....+.+++.+|++...++ |+.++++|
T Consensus 85 ~~~f~~~rl~Re~~r~~~~e~L~~ii~~~~~s~~~k~~A~~~~~~l~~~~~kE~~iE~llkak 147 (196)
T PF12685_consen 85 SDYFAEARLEREQSRSKQIETLKEIINNENASEEEKKEAQDKLLELTEKMEKEMEIENLLKAK 147 (196)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHT-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35789999999999999999999998888999999999999999999876654 55665554
No 13
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=64.74 E-value=63 Score=26.90 Aligned_cols=21 Identities=10% Similarity=0.090 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023857 209 AKQAEEGKVAVRNIRRDALKA 229 (276)
Q Consensus 209 Kk~~E~aKv~IRniR~~~~k~ 229 (276)
....++++..+..+|.++...
T Consensus 55 ~~~~~e~~~~l~~a~~ea~~i 75 (156)
T PRK05759 55 ELAQAKYEAQLAEARAEAAEI 75 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 14
>PRK10780 periplasmic chaperone; Provisional
Probab=64.60 E-value=90 Score=26.64 Aligned_cols=88 Identities=13% Similarity=0.236 Sum_probs=58.0
Q ss_pred CCeEEEeCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChhhhhhhHHHHHHHHHHHHHHH
Q 023857 186 GEVIRLTLPQLTSER--RKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEK-KLSEDNVKDLSSDLQKLTDEYMKKI 262 (276)
Q Consensus 186 g~~I~V~iP~lT~E~--R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k-~iseD~~k~~~k~IQkltd~~ik~i 262 (276)
+.+-.|.+..+-.++ .+.+-+...+........|...+.++.+...++++++ .+|+++....+.+|+....+|....
T Consensus 24 ~KIg~Vd~q~il~~~p~~k~~~~~le~~~~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~~~~~~~el~~~~~~~q~~~ 103 (165)
T PRK10780 24 DKIAIVNMGSIFQQVPQRTGVSKQLENEFKGRASELQRMETDLQAKMQKLQRDGSTMKGSDRTKLEKDVMAQRQTFSQKA 103 (165)
T ss_pred cCeEEeeHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555554433322 3445566667777778888888888888888887664 7899998888888877766666555
Q ss_pred H---HHHHHHHhhh
Q 023857 263 D---SIYKQKEKEL 273 (276)
Q Consensus 263 D---~l~k~KeKEl 273 (276)
. +-+..++.|+
T Consensus 104 ~~~qq~~~~~~~e~ 117 (165)
T PRK10780 104 QAFEQDRRRRSNEE 117 (165)
T ss_pred HHHHHHHHHHHHHH
Confidence 4 2233444444
No 15
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=63.38 E-value=73 Score=26.07 Aligned_cols=26 Identities=8% Similarity=0.001 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023857 247 LSSDLQKLTDEYMKKIDSIYKQKEKE 272 (276)
Q Consensus 247 ~~k~IQkltd~~ik~iD~l~k~KeKE 272 (276)
.++..+.+.++.-.+++.+.+....+
T Consensus 84 a~~~~~~~~~~a~~ea~~~~~~a~~~ 109 (140)
T PRK07353 84 ADKLAAEALAEAQAEAQASKEKARRE 109 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 16
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=63.13 E-value=62 Score=28.26 Aligned_cols=28 Identities=11% Similarity=0.128 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023857 206 KVVAKQAEEGKVAVRNIRRDALKAYEKL 233 (276)
Q Consensus 206 K~aKk~~E~aKv~IRniR~~~~k~ikkl 233 (276)
..+.+..+++...|++.|.++...+...
T Consensus 79 ~eA~~~~~eye~~L~~Ar~EA~~ii~~A 106 (181)
T PRK13454 79 QKAVEAEKAYNKALADARAEAQRIVAET 106 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555566666666666555444
No 17
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=62.96 E-value=69 Score=27.16 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023857 210 KQAEEGKVAVRNIRRDALKAYE 231 (276)
Q Consensus 210 k~~E~aKv~IRniR~~~~k~ik 231 (276)
...++++..+...|.++...+.
T Consensus 60 ~~~~e~e~~l~~A~~ea~~ii~ 81 (164)
T PRK14473 60 NAKRDYEAELAKARQEAAKIVA 81 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555544443
No 18
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=60.84 E-value=77 Score=27.13 Aligned_cols=55 Identities=11% Similarity=0.093 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023857 209 AKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273 (276)
Q Consensus 209 Kk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~l~k~KeKEl 273 (276)
.+..++++..+.++|.++.+.+.... ...+...+.+.++.-++.+.+....+.+|
T Consensus 61 e~~~~~~e~~L~~A~~ea~~Ii~~A~----------~~a~~~~~~~~~~A~~ea~~~~~~A~~~I 115 (167)
T PRK14475 61 QALLADVKAEREEAERQAAAMLAAAK----------ADARRMEAEAKEKLEEQIKRRAEMAERKI 115 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555444332 33344444444445555555555554444
No 19
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=60.82 E-value=74 Score=27.58 Aligned_cols=21 Identities=10% Similarity=0.044 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023857 212 AEEGKVAVRNIRRDALKAYEK 232 (276)
Q Consensus 212 ~E~aKv~IRniR~~~~k~ikk 232 (276)
.++++..+...|.++...+..
T Consensus 81 l~e~e~~L~~A~~ea~~Ii~~ 101 (184)
T PRK13455 81 LASYERKQREVQEQADRIVAA 101 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555544443
No 20
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=60.38 E-value=78 Score=27.19 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023857 209 AKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273 (276)
Q Consensus 209 Kk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~l~k~KeKEl 273 (276)
.+..++++..+..+|..+...+.... ...+...+.+.++.-.+++.+.+..+.+|
T Consensus 67 ~~~~~e~e~~l~~a~~ea~~ii~~A~----------~ea~~~~~~~~~~A~~ea~~~~~~a~~~i 121 (173)
T PRK13460 67 EALLKDYEARLNSAKDEANAIVAEAK----------SDALKLKNKLLEETNNEVKAQKDQAVKEI 121 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555444333 23344444444444444444444444443
No 21
>PF03480 SBP_bac_7: Bacterial extracellular solute-binding protein, family 7; InterPro: IPR018389 This family of proteins are involved in binding extracellular solutes for transport across the bacterial cytoplasmic membrane. This family includes a C4-dicarboxylate-binding protein DctP [, ] and the sialic acid-binding protein SiaP. The structure of the SiaP receptor has revealed an overall topology similar to ATP binding cassette ESR (extracytoplasmic solute receptors) proteins []. Upon binding of sialic acid, SiaP undergoes domain closure about a hinge region and kinking of an alpha-helix hinge component [].; GO: 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 2HZK_C 2HZL_B 2HPG_C 2XWI_A 2XWK_A 2WX9_A 2CEY_A 2WYP_A 3B50_A 2CEX_B ....
Probab=59.62 E-value=62 Score=29.52 Aligned_cols=66 Identities=15% Similarity=0.237 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhhhhhhHHHHHHHHHHHHH
Q 023857 195 QLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKE-KKLSEDNVKDLSSDLQKLTDEYMK 260 (276)
Q Consensus 195 ~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~-k~iseD~~k~~~k~IQkltd~~ik 260 (276)
.|+.|.|+.+.+.+.+........++....++.+.+.+..-. ..+++++.....+..+.+.+++..
T Consensus 218 ~L~~e~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~s~~~~~~~~~~~~~~~~e~~~ 284 (286)
T PF03480_consen 218 SLPDEDQEALDDAADEAEARAREYYEAEDEEALKELEENGVTVVELSDEELAAWREAAAPVWEEFFE 284 (286)
T ss_dssp HS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEGCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCEEeCCCHHHHHHHHHHHHHHHHHHhh
Confidence 477899999999999999999888888888888777652110 135888888888888888877544
No 22
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=59.31 E-value=78 Score=28.30 Aligned_cols=61 Identities=13% Similarity=0.106 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023857 209 AKQAEEGKVAVRNIRRDALKAYEKLQKEK-KLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQK 269 (276)
Q Consensus 209 Kk~~E~aKv~IRniR~~~~k~ikkl~K~k-~iseD~~k~~~k~IQkltd~~ik~iD~l~k~K 269 (276)
.+..++++..+.+.|.++...+.....+. .+-++....++++.+.+..+.-.+|+.--+..
T Consensus 99 ~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a 160 (205)
T PRK06231 99 QQLLENAKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERREL 160 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555444433221 12234445555555555555555555444333
No 23
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=59.12 E-value=75 Score=26.89 Aligned_cols=77 Identities=19% Similarity=0.176 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023857 198 SERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEK-KLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274 (276)
Q Consensus 198 ~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k-~iseD~~k~~~k~IQkltd~~ik~iD~l~k~KeKEll 274 (276)
-+.|++.+..--..+++.+...-..+.++...+...+.+. .+-++-....++..+.+.++.-.+++.+....+.+|.
T Consensus 51 l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~ 128 (156)
T CHL00118 51 LDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEATKQLE 128 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777777788888887778888777777665432 4455556667777778888888888888888777763
No 24
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=59.05 E-value=87 Score=26.95 Aligned_cols=55 Identities=16% Similarity=0.134 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023857 208 VAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKE 272 (276)
Q Consensus 208 aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~l~k~KeKE 272 (276)
+....++++..+.+.|..+...+... ....+...+.+.++.-.+++.+.+..+.+
T Consensus 72 a~~~~~e~e~~L~~Ar~eA~~Ii~~A----------~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ 126 (167)
T PRK08475 72 SKEKKEDALKKLEEAKEKAELIVETA----------KKEAYILTQKIEKQTKDDIENLIKSFEEL 126 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555444433322 23344444445555555555554444433
No 25
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=59.05 E-value=86 Score=26.95 Aligned_cols=56 Identities=11% Similarity=0.125 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChhhhhhhHHHHHHHHHHHHHHHH
Q 023857 208 VAKQAEEGKVAVRNIRRDALKAYEKLQKEK-KLSEDNVKDLSSDLQKLTDEYMKKID 263 (276)
Q Consensus 208 aKk~~E~aKv~IRniR~~~~k~ikkl~K~k-~iseD~~k~~~k~IQkltd~~ik~iD 263 (276)
|....++++..+.++|.++...+....... .+.++....++.+.+.+.+..-..|+
T Consensus 68 A~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~ 124 (175)
T PRK14472 68 AEAILRKNRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIE 124 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444466666666666665554433211 22233333344444444444444333
No 26
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=58.34 E-value=90 Score=26.79 Aligned_cols=53 Identities=4% Similarity=0.119 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023857 210 KQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKE 272 (276)
Q Consensus 210 k~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~l~k~KeKE 272 (276)
+..++++..+..+|.++...+...+ ...+...+.+.++.-++++.+....+.+
T Consensus 71 ~~~~~~~~~L~~a~~ea~~ii~~a~----------~~a~~~~~~~~~~A~~e~~~~~~~a~~~ 123 (174)
T PRK07352 71 QALAEAQQKLAQAQQEAERIRADAK----------ARAEAIRAEIEKQAIEDMARLKQTAAAD 123 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555544443332 2333344444444444444444444433
No 27
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=58.06 E-value=63 Score=32.31 Aligned_cols=74 Identities=14% Similarity=0.157 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023857 199 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEK-KLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKE 272 (276)
Q Consensus 199 E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k-~iseD~~k~~~k~IQkltd~~ik~iD~l~k~KeKE 272 (276)
+.|++.+..-=..+|+++..+...+.++.+.+.+.+.+. .|-++-....++..+++.++.-.+++.+.++.+++
T Consensus 31 ~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~ 105 (445)
T PRK13428 31 AARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQ 105 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444334444444444444444433333332211 22223333344444444444444444444444443
No 28
>PRK01919 tatB sec-independent translocase; Provisional
Probab=58.05 E-value=1e+02 Score=27.24 Aligned_cols=66 Identities=11% Similarity=0.275 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023857 199 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273 (276)
Q Consensus 199 E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~l~k~KeKEl 273 (276)
|+-=++++.+.+..-++|..+.+++.+....+ ..|++++..+++|+...+.-..|.+-+..-++++
T Consensus 23 ekLP~~aRtlGk~i~k~Rr~~~d~K~ev~~E~---------e~dElrk~~~~~e~~~~~v~~si~~~~~~~~~~~ 88 (169)
T PRK01919 23 ERLPRVARTAGALFGRAQRYINDVKAEVSREI---------ELDELRKMKTDFESAARDVENTIHDNLSEHESDL 88 (169)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 56666777777777777777777777665443 2356666667776666666666666666666554
No 29
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=57.03 E-value=79 Score=27.58 Aligned_cols=75 Identities=16% Similarity=0.144 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023857 199 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEK-KLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273 (276)
Q Consensus 199 E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k-~iseD~~k~~~k~IQkltd~~ik~iD~l~k~KeKEl 273 (276)
+.|++.+..--..+++.+...-..+.++...+.+.+.+. .+-++-....++..+.+.++.-.+++.+.+.-+++|
T Consensus 61 ~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~~e~~~~~aea~~~I 136 (181)
T PRK13454 61 AERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQAELDVAIAKADAEIAAKAAESEKRI 136 (181)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555666666666666666666655554332 233333344444455555555555555555444433
No 30
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=57.03 E-value=1.1e+02 Score=25.29 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023857 247 LSSDLQKLTDEYMKKIDSIYKQKEKEL 273 (276)
Q Consensus 247 ~~k~IQkltd~~ik~iD~l~k~KeKEl 273 (276)
.+...+.+.++.-.+++.+....+.+|
T Consensus 74 a~~~~~~~~~~a~~e~~~~~~~a~~~i 100 (147)
T TIGR01144 74 GSEILEEAKAEAREEREKIKAQARAEI 100 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 31
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=56.56 E-value=77 Score=28.40 Aligned_cols=66 Identities=12% Similarity=0.116 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023857 208 VAKQAEEGKVAVRNIRRDALKAYEKLQKEK-KLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273 (276)
Q Consensus 208 aKk~~E~aKv~IRniR~~~~k~ikkl~K~k-~iseD~~k~~~k~IQkltd~~ik~iD~l~k~KeKEl 273 (276)
+.+..+++...|...|.++...+.....+. ...+.....++.+++++..+.-.+|...-.....+|
T Consensus 103 Ae~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~A~~el 169 (204)
T PRK09174 103 ADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAIKAKAMADV 169 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455666666666665554432211 223444455555555555555555555444444433
No 32
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=56.44 E-value=1e+02 Score=26.05 Aligned_cols=23 Identities=4% Similarity=0.120 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023857 210 KQAEEGKVAVRNIRRDALKAYEK 232 (276)
Q Consensus 210 k~~E~aKv~IRniR~~~~k~ikk 232 (276)
+..+++...+.+.|+.+.+.+..
T Consensus 60 ~~~~e~e~~l~~A~~ea~~ii~~ 82 (164)
T PRK14471 60 NLQADNERLLKEARAERDAILKE 82 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555555555544433
No 33
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=56.31 E-value=1e+02 Score=26.60 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChhhhhhhHHHHHHHHHHHHHHHH
Q 023857 208 VAKQAEEGKVAVRNIRRDALKAYEKLQKEK-KLSEDNVKDLSSDLQKLTDEYMKKID 263 (276)
Q Consensus 208 aKk~~E~aKv~IRniR~~~~k~ikkl~K~k-~iseD~~k~~~k~IQkltd~~ik~iD 263 (276)
+....++++..++++|.++...+....... ..-++.....+++.+.+..+.-.+|+
T Consensus 68 A~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~ 124 (173)
T PRK13453 68 AQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIETAQSEIN 124 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444566777777777766555443221 22233333344444444444443333
No 34
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=55.43 E-value=1e+02 Score=26.68 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChhhhhhhHHHHHHHHHHHHHHHHH
Q 023857 210 KQAEEGKVAVRNIRRDALKAYEKLQKEK-KLSEDNVKDLSSDLQKLTDEYMKKIDS 264 (276)
Q Consensus 210 k~~E~aKv~IRniR~~~~k~ikkl~K~k-~iseD~~k~~~k~IQkltd~~ik~iD~ 264 (276)
+...+++..+...|..+...+....+.. ...+.....++.+++.+..+.-..|+.
T Consensus 76 ~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie~ 131 (184)
T CHL00019 76 EKLEKARARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENYKNETIRF 131 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555554444333211 122233333444444444444444433
No 35
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=54.05 E-value=97 Score=26.62 Aligned_cols=75 Identities=15% Similarity=0.157 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023857 199 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEK-KLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273 (276)
Q Consensus 199 E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k-~iseD~~k~~~k~IQkltd~~ik~iD~l~k~KeKEl 273 (276)
|.|++.+...=..+++.+...-....++...+.+.+.+. .+-++-....+...+.+.++.-.+++.+.+..+.+|
T Consensus 48 ~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I 123 (175)
T PRK14472 48 EEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEI 123 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666666666666554332 344455556666666667777777777777766665
No 36
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=53.81 E-value=1.3e+02 Score=25.17 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023857 211 QAEEGKVAVRNIRRDALKA 229 (276)
Q Consensus 211 ~~E~aKv~IRniR~~~~k~ 229 (276)
.-+++...+++.|.++...
T Consensus 60 ~~~e~e~~l~~Ar~eA~~~ 78 (141)
T PRK08476 60 IEHEIETILKNAREEANKI 78 (141)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444555555555443
No 37
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=53.24 E-value=1.1e+02 Score=27.34 Aligned_cols=75 Identities=9% Similarity=0.065 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023857 199 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEK-KLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273 (276)
Q Consensus 199 E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k-~iseD~~k~~~k~IQkltd~~ik~iD~l~k~KeKEl 273 (276)
|.|++.+..--..+++.+...-....++.+.+.+.+.+. .+-++-....+++.+.+.++-..+++.+++.-+++|
T Consensus 83 e~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I 158 (204)
T PRK09174 83 ETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARI 158 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555566666666666666655555444321 233333444455555556666666666666666655
No 38
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=52.96 E-value=96 Score=27.73 Aligned_cols=75 Identities=20% Similarity=0.198 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023857 199 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEK-KLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273 (276)
Q Consensus 199 E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k-~iseD~~k~~~k~IQkltd~~ik~iD~l~k~KeKEl 273 (276)
+.|++.++.-=..+++.+........++.+.+.+.+.+. .+-++-....+...+.+.++.-.+++.+..+.+.+|
T Consensus 78 ~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~I 153 (205)
T PRK06231 78 NKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEI 153 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555556666666666666666666665554322 344444455555566666666677777776666655
No 39
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=52.89 E-value=1.2e+02 Score=26.01 Aligned_cols=75 Identities=15% Similarity=0.249 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023857 199 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEK-KLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273 (276)
Q Consensus 199 E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k-~iseD~~k~~~k~IQkltd~~ik~iD~l~k~KeKEl 273 (276)
+.|++.+..-=..+++.+...-..+.++...+...+.+. .+-++-....+...+.+.++.-.+++.+....+.+|
T Consensus 48 ~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I 123 (173)
T PRK13453 48 DKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIETAQSEI 123 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555444321 333444445555556666666666676666666655
No 40
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=50.24 E-value=1.3e+02 Score=24.02 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023857 203 ELSKVVAKQAEEGKVAVRNIRRDALKAYEK 232 (276)
Q Consensus 203 ~lvK~aKk~~E~aKv~IRniR~~~~k~ikk 232 (276)
+.++.+|+.=+++...|++.|..+...+..
T Consensus 3 e~i~~ik~aE~~~e~~L~~A~~Ea~~Ii~~ 32 (103)
T PRK08404 3 DVIKEIVKAEKEAEERIEKAKEEAKKIIRK 32 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666554443
No 41
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=48.90 E-value=1.3e+02 Score=26.13 Aligned_cols=75 Identities=11% Similarity=0.197 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023857 199 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEK-KLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273 (276)
Q Consensus 199 E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k-~iseD~~k~~~k~IQkltd~~ik~iD~l~k~KeKEl 273 (276)
+.|++.+...-..+++.+...-....++.+.+...+.+. .+-++-....+...+.+.++.-.+++.+....+.+|
T Consensus 54 ~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~i 129 (184)
T CHL00019 54 DNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENYKNETI 129 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555566666666666666666555554322 334455556666667777777777777777666555
No 42
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=48.64 E-value=1.7e+02 Score=25.28 Aligned_cols=30 Identities=13% Similarity=0.108 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023857 204 LSKVVAKQAEEGKVAVRNIRRDALKAYEKL 233 (276)
Q Consensus 204 lvK~aKk~~E~aKv~IRniR~~~~k~ikkl 233 (276)
.-+.+.++.++.+..++..|+.+...++.-
T Consensus 50 ~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A 79 (154)
T PRK06568 50 LKEDAALLFEQTNAQIKKLETLRSQMIEES 79 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555566666677776666655444
No 43
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=47.71 E-value=1.4e+02 Score=25.60 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHH
Q 023857 204 LSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 264 (276)
Q Consensus 204 lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~ 264 (276)
+.....+..++++...+.++..+.....+.. +.......++.+.+.+..-.+|+.
T Consensus 69 ~~~e~e~~l~~a~~ea~~ii~~A~~ea~~~~------~~~~~~A~~ea~~~~~~a~~~ie~ 123 (173)
T PRK13460 69 LLKDYEARLNSAKDEANAIVAEAKSDALKLK------NKLLEETNNEVKAQKDQAVKEIEL 123 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555554444332 233334444444444444444443
No 44
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=47.41 E-value=1.5e+02 Score=27.04 Aligned_cols=21 Identities=5% Similarity=-0.035 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023857 211 QAEEGKVAVRNIRRDALKAYE 231 (276)
Q Consensus 211 ~~E~aKv~IRniR~~~~k~ik 231 (276)
..++++..+..+|+.+...+.
T Consensus 58 ~~~e~e~~l~~a~~ea~~i~~ 78 (246)
T TIGR03321 58 ERREYEEKNEELDQQREVLLT 78 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555554443
No 45
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=47.20 E-value=1.4e+02 Score=25.51 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHH
Q 023857 205 SKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 265 (276)
Q Consensus 205 vK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~l 265 (276)
.....+..++++.....++.++.....+.. ++.....+++++.+.++....|+.-
T Consensus 73 ~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~------~~~~~~A~~e~~~~~~~a~~~i~~e 127 (174)
T PRK07352 73 LAEAQQKLAQAQQEAERIRADAKARAEAIR------AEIEKQAIEDMARLKQTAAADLSAE 127 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555544332 3333444555555555554444443
No 46
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=47.02 E-value=1.6e+02 Score=24.61 Aligned_cols=60 Identities=12% Similarity=0.147 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHH
Q 023857 198 SERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 263 (276)
Q Consensus 198 ~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD 263 (276)
.+-+.+.-+.+.+..++|+..+...+.++...++.-. .+....+..++..+.+.-..++.
T Consensus 80 ~~a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~~e~------~~~~~~l~~qv~~~~~~~~~~~~ 139 (141)
T PRK08476 80 QKAIAKAKEEAEKKIEAKKAELESKYEAFAKQLANQK------QELKEQLLSQMPEFKEALNAKLS 139 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHHHHHHHHhh
Confidence 4556667777777788888888888888887765432 34455566666666666555543
No 47
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=46.69 E-value=1.8e+02 Score=24.50 Aligned_cols=29 Identities=7% Similarity=0.038 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023857 206 KVVAKQAEEGKVAVRNIRRDALKAYEKLQ 234 (276)
Q Consensus 206 K~aKk~~E~aKv~IRniR~~~~k~ikkl~ 234 (276)
..+....++++..+..+|.++...+...+
T Consensus 50 ~eA~~~~~~~e~~L~~A~~ea~~ii~~A~ 78 (159)
T PRK09173 50 EEAQQLLAEYQRKRKEAEKEAADIVAAAE 78 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555666666666665554443
No 48
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=46.47 E-value=1.6e+02 Score=24.96 Aligned_cols=28 Identities=4% Similarity=0.138 Sum_probs=12.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023857 245 KDLSSDLQKLTDEYMKKIDSIYKQKEKE 272 (276)
Q Consensus 245 k~~~k~IQkltd~~ik~iD~l~k~KeKE 272 (276)
...++..+.+.++.-.+++.+....+.+
T Consensus 85 ~~a~~~~~~~l~~A~~ea~~~~~~a~~~ 112 (164)
T PRK14473 85 ERARAQEAEIIAQARREAEKIKEEARAQ 112 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 49
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=45.76 E-value=1.6e+02 Score=27.13 Aligned_cols=51 Identities=12% Similarity=0.118 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 023857 211 QAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEK 271 (276)
Q Consensus 211 ~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~l~k~KeK 271 (276)
..++++..+.++++.+...+...+ ...+++.+.+.++--.+++.+......
T Consensus 58 ~~~e~e~~l~~a~~ea~~ii~~A~----------~eA~~~~~~il~~A~~ea~~~~~~a~~ 108 (250)
T PRK14474 58 EAERYRQKQQSLEQQRASFMAQAQ----------EAADEQRQHLLNEAREDVATARDEWLE 108 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555444433332 233444444444444444444444433
No 50
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=45.23 E-value=1.8e+02 Score=24.08 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=50.0
Q ss_pred CCeEEEeCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChhhhhhhHHHHHHHHHHHHHHH
Q 023857 186 GEVIRLTLPQLTSER--RKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEK-KLSEDNVKDLSSDLQKLTDEYMKKI 262 (276)
Q Consensus 186 g~~I~V~iP~lT~E~--R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k-~iseD~~k~~~k~IQkltd~~ik~i 262 (276)
..+..|.+..+=.++ -+.+.+...+..+.....+...+.+..+..+++...+ .+|+++....+.+++....++....
T Consensus 17 ~kIa~Vd~~~v~~~~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~ 96 (158)
T PF03938_consen 17 PKIAVVDVDKVFQESPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQ 96 (158)
T ss_dssp -CEEEE-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEeeHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 345555544444443 3445556667777777888888888888777776543 7899988888888888776665544
Q ss_pred H
Q 023857 263 D 263 (276)
Q Consensus 263 D 263 (276)
.
T Consensus 97 ~ 97 (158)
T PF03938_consen 97 Q 97 (158)
T ss_dssp H
T ss_pred H
Confidence 3
No 51
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=44.54 E-value=1.8e+02 Score=24.49 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHH
Q 023857 204 LSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 264 (276)
Q Consensus 204 lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~ 264 (276)
+.....+..++++.....++.++.....+.. +......+++.+.+..+...+|+.
T Consensus 58 ~~~e~~~~l~~a~~ea~~ii~~a~~~a~~~~------~~i~~~A~~ea~~~~~~a~~~i~~ 112 (159)
T PRK13461 58 LKLKNERELKNAKEEGKKIVEEYKSKAENVY------EEIVKEAHEEADLIIERAKLEAQR 112 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555554443332 333344444444444444444443
No 52
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=44.25 E-value=1.8e+02 Score=24.62 Aligned_cols=73 Identities=15% Similarity=0.202 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023857 200 RRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEK-KLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKE 272 (276)
Q Consensus 200 ~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k-~iseD~~k~~~k~IQkltd~~ik~iD~l~k~KeKE 272 (276)
.|++.+..--..+++++...-....++...+...+.+. .+-++-....+...+.+.++.-.+++.+.+..+.+
T Consensus 39 ~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~ 112 (164)
T PRK14471 39 EREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQAKAS 112 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444344444444444444444444443333211 12222223333333344444444444444444443
No 53
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=43.98 E-value=1.9e+02 Score=24.91 Aligned_cols=67 Identities=12% Similarity=0.070 Sum_probs=50.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023857 195 QLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQK 269 (276)
Q Consensus 195 ~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~l~k~K 269 (276)
.||+|-.++|......+-. .|....+.++...-.+-+||+-....-++=|...+..|.+++..+...
T Consensus 7 ~lT~eg~~~L~~EL~~L~~--------~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~~A 73 (158)
T PRK05892 7 GLAPAARDHLEAELARLRA--------RRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLRTG 73 (158)
T ss_pred ccCHHHHHHHHHHHHHHHH--------HhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6899999988877766532 344444455444445789999888888888999999999999988753
No 54
>TIGR02609 doc_partner putative addiction module antidote. Members of this protein family are putative addiction module antidote proteins that appear recurringly in two-gene operons with members of the Doc (death-on-curing) family TIGR01550. Members of this family contain a SpoVT/AbrB-like domain (pfam04014). Note that the gene pairs with a member of this family tend to be found on bacterial chromosomes, not on plasmids.
Probab=43.86 E-value=76 Score=23.71 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=27.2
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023857 186 GEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222 (276)
Q Consensus 186 g~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRni 222 (276)
|..+..+..+ +++..+++.+.+.+..++.+..+|..
T Consensus 37 ~~iii~~~~~-~~~~~~~~~~~~~~~~~~y~~~l~~L 72 (74)
T TIGR02609 37 GGLKLKRFDE-GKELEKKMQMAVERAMSKYDEALKEL 72 (74)
T ss_pred CEEEEEECCC-CccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444 78999999999999999999888753
No 55
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=43.56 E-value=1.7e+02 Score=25.25 Aligned_cols=76 Identities=8% Similarity=0.122 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023857 198 SERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEK-KLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273 (276)
Q Consensus 198 ~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k-~iseD~~k~~~k~IQkltd~~ik~iD~l~k~KeKEl 273 (276)
-|.|++.+..-=..+|+.+........++...+.+.+.+. .+-++-....+...+++.++...+++.+.+..+++|
T Consensus 56 L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I 132 (184)
T PRK13455 56 LDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAEDQI 132 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666666666667777776667777766666554332 333333334555555566666666666666655554
No 56
>PF09388 SpoOE-like: Spo0E like sporulation regulatory protein; InterPro: IPR018540 Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure []. ; PDB: 2BZB_B 2C0S_A.
Probab=43.23 E-value=1e+02 Score=20.81 Aligned_cols=40 Identities=33% Similarity=0.530 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHH
Q 023857 217 VAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMK 260 (276)
Q Consensus 217 v~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik 260 (276)
..|-..|+...+.+. ..+++.+++=.+..++|++..+|++
T Consensus 4 ~~Ie~~R~~L~~~~~----~~~l~~~~vl~~Sq~LD~lI~~y~~ 43 (45)
T PF09388_consen 4 EEIEELRQELNELAE----KKGLTDPEVLELSQELDKLINEYQK 43 (45)
T ss_dssp HHHHHHHHHHHHHHH----HCCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH----HcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 457778888877654 3489999999999999999999975
No 57
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=42.95 E-value=1.3e+02 Score=22.18 Aligned_cols=34 Identities=18% Similarity=0.433 Sum_probs=25.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023857 193 LPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDA 226 (276)
Q Consensus 193 iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~ 226 (276)
+|..+.+.|..++..+....++|..-|...--++
T Consensus 15 ~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~ 48 (79)
T PF05008_consen 15 IKNLSGEQRKSLIREIERDLDEAEELLKQMELEV 48 (79)
T ss_dssp GGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455568999999999999999988777554433
No 58
>PF07564 DUF1542: Domain of Unknown Function (DUF1542); InterPro: IPR011439 This domain is found in several cell surface proteins. Some are involved in antibiotic resistance (e.g. Q9RL69 from SWISSPROT and Q9LCJ9 from SWISSPROT) [] and/or cellular adhesion (e.g. Q931R6 from SWISSPROT) []. In some proteins it is repeated more than fifteen times.
Probab=42.39 E-value=1e+02 Score=22.45 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023857 194 PQLTSERRKELSKVVAKQAEEGKVAVRNIRR 224 (276)
Q Consensus 194 P~lT~E~R~~lvK~aKk~~E~aKv~IRniR~ 224 (276)
|-+|.|-++.....+.....++...|-+...
T Consensus 10 ~~~T~eEK~~A~~~v~~~~~~a~~~I~~a~t 40 (70)
T PF07564_consen 10 PNATDEEKQAAKQKVDQILNQAINAINQATT 40 (70)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 7889999999998888888888877765544
No 59
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=42.39 E-value=1.1e+02 Score=29.22 Aligned_cols=49 Identities=20% Similarity=0.271 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHH
Q 023857 201 RKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSS 249 (276)
Q Consensus 201 R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k 249 (276)
|++..+...+..++.+..-+.-|+.-.+.-++-++-.++|.++.+++++
T Consensus 264 R~~~~~~~~K~~~~~r~E~~~~~k~e~kr~e~~~~~~~lspeeQrK~ee 312 (321)
T PF07946_consen 264 REEEEEKILKEAHQERQEEAQEKKEEKKREERERKLSKLSPEEQRKYEE 312 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3333444444444444444333333333322222234556566555554
No 60
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=41.47 E-value=1.1e+02 Score=26.38 Aligned_cols=60 Identities=15% Similarity=0.224 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhhhhhhHHHHHHHHHHHHHHHHHH
Q 023857 202 KELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKE-KKLSEDNVKDLSSDLQKLTDEYMKKIDSI 265 (276)
Q Consensus 202 ~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~-k~iseD~~k~~~k~IQkltd~~ik~iD~l 265 (276)
-++.+.|.++.++...+|+.+=++..+..+.+..+ .+..++....+ .++.|.+.+...++
T Consensus 84 Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~~~~~~~~e~l~~~~----K~~~D~~~k~~~~~ 144 (155)
T PF07464_consen 84 PEVEKQANELQEKLQSAVQSLVQESQKLAKEVSENSEGANEKLQPAI----KQAYDDAVKAAQKV 144 (155)
T ss_dssp HHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHS---SS-GGGHHHH----HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH----HHHHHHHHHHHHHH
Confidence 35677888888888999999999888888888766 45665554444 44444444444433
No 61
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.68 E-value=1e+02 Score=28.26 Aligned_cols=72 Identities=6% Similarity=-0.065 Sum_probs=54.1
Q ss_pred eeeeecCCCcEEEEeecCCCcHHHHHHHHHhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 023857 145 IAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216 (276)
Q Consensus 145 lAqVsv~~~~tL~I~p~D~s~ik~I~kAI~~S~LglnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aK 216 (276)
-.|+-+.+|+.+.-.++++..+..+.+++...++.+.+..-.....+.+=.+.++.|+.-++..++..+.|.
T Consensus 27 ~~qif~~~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~iNlas~~~~~r~~sv~~~~~~i~~A~ 98 (274)
T TIGR00587 27 AFMFFLKSPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYLINLASPDEEKEEKSLDVLDEELKRCE 98 (274)
T ss_pred EEEEEecCccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCeeeecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 457778888888777777778888888888888876664333333388888899999988888887776654
No 62
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=39.20 E-value=51 Score=25.41 Aligned_cols=38 Identities=21% Similarity=0.384 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhhccCCCCcCCCcceEEEE-C-Cccccccce
Q 023857 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEY-Y-GSPVSLKSI 145 (276)
Q Consensus 104 M~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~-~-G~~~pL~~l 145 (276)
-+.+.+.+...|+++. .|++++.|.|.- + |...|.=.-
T Consensus 18 ~~~i~~~L~~kL~~i~----~P~fl~~i~v~~~~lG~~~P~i~~ 57 (91)
T PF10296_consen 18 RDKIKEKLQKKLNKIK----LPSFLDEISVTELDLGDSPPIISN 57 (91)
T ss_pred HHHHHHHHHHHHcccc----CCCccCcEEEEEEECCCCCCEEEe
Confidence 3444555556666555 899999999983 3 888884333
No 63
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=39.04 E-value=52 Score=20.65 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=19.4
Q ss_pred HHHHHHHHhhcCCCChhhhhhhHHHH
Q 023857 226 ALKAYEKLQKEKKLSEDNVKDLSSDL 251 (276)
Q Consensus 226 ~~k~ikkl~K~k~iseD~~k~~~k~I 251 (276)
.+..++.+...+.||+++......+|
T Consensus 4 ~L~~L~~l~~~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 4 RLEKLKELYDKGEISEEEYEQKKARL 29 (31)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34566777778999999987776654
No 64
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=38.89 E-value=2.3e+02 Score=23.72 Aligned_cols=36 Identities=8% Similarity=0.081 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023857 199 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQ 234 (276)
Q Consensus 199 E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~ 234 (276)
+.|++-+..--..+++.+......+.++...+.+.+
T Consensus 32 ~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~ 67 (159)
T PRK09173 32 DARADRIKNELAEARRLREEAQQLLAEYQRKRKEAE 67 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555566666666666666665555544
No 65
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=38.57 E-value=2.4e+02 Score=24.04 Aligned_cols=26 Identities=15% Similarity=0.015 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023857 205 SKVVAKQAEEGKVAVRNIRRDALKAY 230 (276)
Q Consensus 205 vK~aKk~~E~aKv~IRniR~~~~k~i 230 (276)
....++..++++..-..|+.++....
T Consensus 64 ~~~~e~~L~~A~~ea~~Ii~~A~~~a 89 (167)
T PRK14475 64 LADVKAEREEAERQAAAMLAAAKADA 89 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 66
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=38.49 E-value=2.6e+02 Score=24.11 Aligned_cols=74 Identities=12% Similarity=0.030 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023857 199 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEK-KLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKE 272 (276)
Q Consensus 199 E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k-~iseD~~k~~~k~IQkltd~~ik~iD~l~k~KeKE 272 (276)
|.|++.+...=..+|+.|.....+..+....+++...+. .+-++-....++..+++.++.-.+++.+.+..+.+
T Consensus 34 eeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~~ea~r~~~~A~~~ 108 (154)
T PRK06568 34 DAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNEVTKKIIQEKTKEIEEFLEHKKSDAIQL 108 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666667777776666666666665544321 22223333444444555555555555554444333
No 67
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=38.14 E-value=1.6e+02 Score=23.30 Aligned_cols=64 Identities=19% Similarity=0.268 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023857 210 KQAEEGKVAVRNIRRDALKAYEKLQKEK-KLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273 (276)
Q Consensus 210 k~~E~aKv~IRniR~~~~k~ikkl~K~k-~iseD~~k~~~k~IQkltd~~ik~iD~l~k~KeKEl 273 (276)
..+++.+...-....++.+.+...+.+. .+-++-....++..+.+..+.-++++.+....+.+|
T Consensus 40 ~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~~~~~~~a~~~i 104 (132)
T PF00430_consen 40 EEAEELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEAERIIEQAEAEI 104 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443221 222233334444444444555555555555444443
No 68
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=37.77 E-value=2.7e+02 Score=24.13 Aligned_cols=52 Identities=13% Similarity=0.280 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 023857 210 KQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 267 (276)
Q Consensus 210 k~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~l~k 267 (276)
+...+++...+.||.++.+.+.. =.+.+.+.++.++-++.++-++++..+.+
T Consensus 69 ~~L~~Ar~eA~~I~~e~~~~~~a------~~~~~~~~~ea~L~~~~~~~~~~~~~~~~ 120 (155)
T PRK06569 69 EEIDKTNTEIDRLKKEKIDSLES------EFLIKKKNLEQDLKNSINQNIEDINLAAK 120 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555554432 14567778888888888887777765544
No 69
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=37.70 E-value=90 Score=22.49 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHH
Q 023857 212 AEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEY 258 (276)
Q Consensus 212 ~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ 258 (276)
.++.=..+|.-|+|++.++.-+. +-+.-....++.+-|+.+.++.
T Consensus 9 ~~~~~~~lR~~RHD~~NhLqvI~--gllqlg~~~~a~eYi~~~~~~~ 53 (62)
T PF14689_consen 9 LEELIDSLRAQRHDFLNHLQVIY--GLLQLGKYEEAKEYIKELSKDL 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH--HHHHCCCHHHHHHHHHHHHHHH
Confidence 44555689999999999987663 3344444455555555554443
No 70
>PF13865 FoP_duplication: C-terminal duplication domain of Friend of PRMT1
Probab=37.66 E-value=79 Score=23.82 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=25.7
Q ss_pred ccccchhhhHHhHHHHHHHHHHHHHHHHHHHH
Q 023857 81 VRCATIEEIEAEKSSIEKDVKARMERTIDMVR 112 (276)
Q Consensus 81 ~~~~~~ee~~~~~~~i~~~~~~kM~k~ve~lk 112 (276)
-...+.||.++|+|.++......++.-++.+-
T Consensus 37 ~~~kT~EeLDaELD~Ym~~~~~~LD~~Ld~Y~ 68 (74)
T PF13865_consen 37 KPPKTAEELDAELDAYMSKTKSKLDAELDSYM 68 (74)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778999999999988888888777776654
No 71
>PF06518 DUF1104: Protein of unknown function (DUF1104); InterPro: IPR009488 This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.; PDB: 2XRH_A.
Probab=37.11 E-value=1.4e+02 Score=23.65 Aligned_cols=59 Identities=24% Similarity=0.325 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHH
Q 023857 198 SERRKELSKVVAKQAE-EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKI 262 (276)
Q Consensus 198 ~E~R~~lvK~aKk~~E-~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~i 262 (276)
.|++-++-|.++++-. +++.=-+..+..+.+.+. .+|..+.....++|.+...+.++.+
T Consensus 24 ~dy~~Ei~KR~~~m~~~~~k~f~~~~~~~~~kn~~------~ms~~e~~k~~~ev~k~~~~~~~~m 83 (93)
T PF06518_consen 24 PDYKMEIHKRLKKMKEKEAKDFKKQFKEAARKNLS------KMSVEERKKRREEVRKALEKRIKKM 83 (93)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHT------TS-HHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH------HCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5889999999998877 677767777777766553 3677888877777777776655544
No 72
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=35.83 E-value=2.6e+02 Score=23.95 Aligned_cols=68 Identities=12% Similarity=0.066 Sum_probs=49.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 023857 194 PQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 268 (276)
Q Consensus 194 P~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~l~k~ 268 (276)
+.||+|-.++|.+....+-. .-|.+..+.++.....+-+||+.....-++-|...+.-+..++..++.
T Consensus 3 ~~lT~~G~~~L~~El~~L~~-------~~r~~~~~~i~~Ar~~GDlsENaeY~aak~~~~~le~rI~~L~~~L~~ 70 (156)
T TIGR01461 3 PLITPEGYEKLKQELNYLWR-------EERPEVTQKVTWAASLGDRSENADYQYGKKRLREIDRRVRFLTKRLEN 70 (156)
T ss_pred cccCHHHHHHHHHHHHHHHh-------cccHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46899999888777765532 123344444444444578999998888999999999999999988764
No 73
>PF15605 Toxin_52: Putative toxin 52
Probab=35.16 E-value=1.7e+02 Score=23.93 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 023857 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 267 (276)
Q Consensus 214 ~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~l~k 267 (276)
++-.+|+|+++..- +.-++..+|++...-++..+++.+ .++++|+++|.
T Consensus 54 da~~GL~n~~~~le----~~L~np~l~~~~r~~lq~~l~ea~-~~l~kiE~~~~ 102 (103)
T PF15605_consen 54 DAYRGLVNRKRTLE----GSLKNPNLSGRTRELLQSKLNEAN-NYLDKIEDFFP 102 (103)
T ss_pred HHHHHHHHHHHHHH----HhcCCCCCchHHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence 45567888777443 333567889888888888888765 57888888875
No 74
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=34.90 E-value=1.9e+02 Score=21.49 Aligned_cols=50 Identities=26% Similarity=0.335 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHH
Q 023857 213 EEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 263 (276)
Q Consensus 213 E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD 263 (276)
++.+..|..|+....+ |.++.+....+.+.-...+.+|+.++++....+.
T Consensus 10 ~~i~~~i~~i~~~~~~-l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~ 59 (103)
T PF00804_consen 10 QEIREDIDKIKEKLNE-LRKLHKKILSSPDQDSELKRELDELTDEIKQLFQ 59 (103)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 3444444444444332 3333322222333225666777777666554443
No 75
>PRK05412 putative nucleotide-binding protein; Reviewed
Probab=34.83 E-value=31 Score=30.19 Aligned_cols=33 Identities=30% Similarity=0.349 Sum_probs=29.9
Q ss_pred cCCCcHHHHHHHHHhCCCCCCccCCCCeEEEeC
Q 023857 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTL 193 (276)
Q Consensus 161 ~D~s~ik~I~kAI~~S~LglnPq~Dg~~I~V~i 193 (276)
-|....|.|.++|.++.+-++++..|..|||+=
T Consensus 100 I~~e~AKkIvK~IKd~klKVqa~IQGd~vRVtg 132 (161)
T PRK05412 100 IDQELAKKIVKLIKDSKLKVQAQIQGDQVRVTG 132 (161)
T ss_pred cCHHHHHHHHHHHHhcCCceeEEecCcEEEEec
Confidence 477889999999999999999999999999853
No 76
>KOG1664 consensus Vacuolar H+-ATPase V1 sector, subunit E [Energy production and conversion]
Probab=33.68 E-value=2e+02 Score=26.41 Aligned_cols=52 Identities=25% Similarity=0.337 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023857 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273 (276)
Q Consensus 216 Kv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~l~k~KeKEl 273 (276)
+.-++=||++|..+.+.+. ++-++.+.+++ -.+...-..+|++-|+.|||++
T Consensus 11 ~~M~aFI~qEA~EKA~EI~----~kAeeEfnIEK--~rlV~~q~~kI~~~yekKeKqv 62 (220)
T KOG1664|consen 11 KHMVAFIRQEAEEKAKEID----AKAEEEFNIEK--GRLVQEQRLKIMQYYEKKEKQV 62 (220)
T ss_pred HHHHHHHHHHHHHHHHHhh----hhhHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888877665542 34444444443 3566666777777777777766
No 77
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=32.79 E-value=1.3e+02 Score=27.44 Aligned_cols=72 Identities=26% Similarity=0.303 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCChhhhhhhHHHHHHHHHHHHHHHHH
Q 023857 193 LPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKL-QKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 264 (276)
Q Consensus 193 iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl-~K~k~iseD~~k~~~k~IQkltd~~ik~iD~ 264 (276)
-|.+|.|-|.=+.-.-|.....-|.++|.+..-..+.-.+- .....+-++-.++++++|..+-++.+.-||.
T Consensus 31 ~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~kie~EL~~~C~eii~lId~ 103 (236)
T PF00244_consen 31 NPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKIEDELIDICNEIIRLIDK 103 (236)
T ss_dssp SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999998866444321110 0000122333445555555555555555554
No 78
>PF08182 Pedibin: Pedibin/Hym-346 family; InterPro: IPR012594 This family consists of the pedibin and Hym-346 signalling peptides. These two peptides have been isolated from Hydra attenuata (Hydra) (Hydra vulgaris) and Hydra magnipapillata (Hydra). Experiments have indicated that both cause a reduction in the positional value gradient, the principle patterning process governing the maintenance of form in the adult hydra. The peptides cause an increase in the rate of foot regeneration following bisection of the body column. Thus both play important signalling roles in patterning processes in cnidaria and maybe in more complex metazoans [].
Probab=32.51 E-value=91 Score=20.58 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHhhhhc
Q 023857 248 SSDLQKLTDEYM--KKIDSIYKQKEKELLK 275 (276)
Q Consensus 248 ~k~IQkltd~~i--k~iD~l~k~KeKEll~ 275 (276)
..+|..|.-.|. ..++..+++|||+|-.
T Consensus 3 ~~EI~~Lq~~~a~Gedv~~~LE~Kek~L~n 32 (35)
T PF08182_consen 3 CAEIDVLQIQLADGEDVCKELEQKEKELSN 32 (35)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 344555544443 4678888999999753
No 79
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=32.33 E-value=2.5e+02 Score=21.99 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=13.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023857 245 KDLSSDLQKLTDEYMKKIDSIYKQKE 270 (276)
Q Consensus 245 k~~~k~IQkltd~~ik~iD~l~k~Ke 270 (276)
......|++-|+..+..+...+....
T Consensus 65 ~~~~~~l~~et~~~i~~i~~~~~~~~ 90 (105)
T PF03179_consen 65 EQEAEELEKETEEKIEEIKKSASKNK 90 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34445555555555555555554443
No 80
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=31.26 E-value=3.2e+02 Score=24.86 Aligned_cols=26 Identities=23% Similarity=0.343 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Q 023857 246 DLSSDLQKLTDEYMKKIDSIYKQKEK 271 (276)
Q Consensus 246 ~~~k~IQkltd~~ik~iD~l~k~KeK 271 (276)
..+..-+.+.++.-.+++.+.+....
T Consensus 83 eA~~~~~~i~~~A~~ea~~~~~~a~~ 108 (246)
T TIGR03321 83 EAQAERQRLLDEAREEADEIREKWQE 108 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444443333
No 81
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=31.23 E-value=1e+02 Score=30.75 Aligned_cols=71 Identities=7% Similarity=0.104 Sum_probs=58.1
Q ss_pred ceeeeecCCCcEEEEeecCCCcHHHHHHHHHhCCCCCCcc-CCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 023857 144 SIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPN-NDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215 (276)
Q Consensus 144 ~lAqVsv~~~~tL~I~p~D~s~ik~I~kAI~~S~LglnPq-~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~a 215 (276)
+.-||-++++|.+.-.|+++..+..+.+++...++++.|. .-+..+ |.+--+.+|.|+.-+.......+.|
T Consensus 156 ~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYl-INLASpd~e~rekSv~~~~~eL~rA 227 (413)
T PTZ00372 156 QAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYL-INLANPDKEKREKSYDAFLDDLQRC 227 (413)
T ss_pred CEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCce-ecCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999987654 344455 8888889999998877777666654
No 82
>PLN02372 violaxanthin de-epoxidase
Probab=30.99 E-value=2.4e+02 Score=28.47 Aligned_cols=72 Identities=17% Similarity=0.179 Sum_probs=46.9
Q ss_pred cCCCcHHHHHHHHHhCCCCCCcc--CCCC-----eEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023857 161 YDKSSLKSIEKAIVSSDLGMTPN--NDGE-----VIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEK 232 (276)
Q Consensus 161 ~D~s~ik~I~kAI~~S~LglnPq--~Dg~-----~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikk 232 (276)
|.++.+..+++|..+.++.+.-- .|.+ -+-=.|++--+|--+.++|.+..+.++--..++.+++..++.++.
T Consensus 327 lP~~~~p~L~~Aa~kvG~df~~F~~tDNsCgpep~l~~~l~~~~e~~e~~i~~e~~~~~~e~~~~v~~~~~~~~~~~~~ 405 (455)
T PLN02372 327 LPESIVPELEKAAKKVGRDFSDFVRTDNTCGPEPPLLERLEKDVEEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKR 405 (455)
T ss_pred CChhhhHHHHHHHHHcCCCHHHheeeCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999888876632 2221 111112222344455677777777777777888899888877776
No 83
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=30.40 E-value=3.1e+02 Score=22.63 Aligned_cols=27 Identities=15% Similarity=0.095 Sum_probs=11.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 023857 245 KDLSSDLQKLTDEYMKKIDSIYKQKEK 271 (276)
Q Consensus 245 k~~~k~IQkltd~~ik~iD~l~k~KeK 271 (276)
...+...+.+.++.-.+++.+.+..+.
T Consensus 81 ~ea~~~~~~~~~~a~~ea~~~~~~a~~ 107 (156)
T PRK05759 81 KRAAQIIEEAKAEAEAEAARIKAQAQA 107 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333
No 84
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=29.71 E-value=1.7e+02 Score=23.53 Aligned_cols=61 Identities=15% Similarity=0.253 Sum_probs=44.1
Q ss_pred CCCcEEEEeecC-CCcHHHHHHHHHhCCCCCC-----ccCCCC--eEEEeCCCCCHHHHHHHHHHHHHHHH
Q 023857 151 PDSSSLLIQPYD-KSSLKSIEKAIVSSDLGMT-----PNNDGE--VIRLTLPQLTSERRKELSKVVAKQAE 213 (276)
Q Consensus 151 ~~~~tL~I~p~D-~s~ik~I~kAI~~S~Lgln-----Pq~Dg~--~I~V~iP~lT~E~R~~lvK~aKk~~E 213 (276)
.+.++|.|.+-+ |..+..|.--...-++|+. |..++. .+.|.++ +.+.-++++|++.|+-+
T Consensus 6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~--~~~~i~Qi~kQL~KLid 74 (96)
T PRK08178 6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN--DDQRLEQMISQIEKLED 74 (96)
T ss_pred CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc--CchHHHHHHHHHhCCcC
Confidence 456889999887 8889988887777777766 555544 6666665 46777777777766543
No 85
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=29.60 E-value=2.6e+02 Score=21.43 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023857 200 RRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKL 233 (276)
Q Consensus 200 ~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl 233 (276)
.+.++-..++...+.+...+..+|..+...+...
T Consensus 10 l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a 43 (94)
T PF05957_consen 10 LRADLEDLARSAADLAGEKADEARDRAEEALDDA 43 (94)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555566666666665555443
No 86
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=29.60 E-value=1.7e+02 Score=32.14 Aligned_cols=67 Identities=16% Similarity=0.307 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 023857 196 LTSERRKELSKVVAKQAE--------EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 267 (276)
Q Consensus 196 lT~E~R~~lvK~aKk~~E--------~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~l~k 267 (276)
.|.|.+.+++...=.++- .|...+|..+....++++ .+.|++++.++-+++.+.+++|+.++-+-..
T Consensus 474 ~~~~~l~~v~~~LW~lAl~iEdG~ls~A~~~Lr~AQ~aL~eAL~-----~gAsdeEI~~Lm~eLR~Am~~ym~~LAeq~~ 548 (851)
T TIGR02302 474 RTDDALRDVADNLWSLALGIEDGDLSDAERRLRAAQDALKDALE-----RGASDEEIKQLTDKLRAAMQTYMRQLAQQLR 548 (851)
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566666666665544432 355666666665555543 4689999999999999999999998876444
No 87
>PF09440 eIF3_N: eIF3 subunit 6 N terminal domain; InterPro: IPR019010 This entry represents the N-terminal domain of subunit 6 (or e) (eIF3e) of the translation initiation factor eIF3. EIF3 is required in protein synthesis in mammalian cells and, together with other initiation factors, stimulates binding of initiator methionyl-tRNAi and mRNA to the 40S ribosomal subunit to form the 48 S initiation complex []. The eIF3 complex also prevents premature association of the 40 and 60 S ribosomal subunits and interacts with other initiation factors involved in start codon selection. EIF3 has at least 13 protein components (eIF3a-m or 1-13), where subunits h, i, k, and m are likely to be on the periphery of the complex []. Subunit 6 is produced by the int6 gene, one of the frequent integration sites for mouse mammary tumor viruses [].
Probab=29.37 E-value=1.6e+02 Score=24.71 Aligned_cols=54 Identities=22% Similarity=0.390 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhhcCCCChhhhhh
Q 023857 193 LPQLTSERRKELSKVVAKQAEEGK---------VAVRNIRRDALKAYEKLQKEKKLSEDNVKD 246 (276)
Q Consensus 193 iP~lT~E~R~~lvK~aKk~~E~aK---------v~IRniR~~~~k~ikkl~K~k~iseD~~k~ 246 (276)
+|.=..++|+++++..+++-+++. ..+.++|++-..-+.-++++.+++.|.+..
T Consensus 63 ~p~e~~~kr~~Vl~~l~~l~~~~~~v~~~~~~~ev~~~l~~dk~~nl~~L~~~h~it~e~id~ 125 (133)
T PF09440_consen 63 VPAELAEKREEVLAELKELEEETEPVLELLEDPEVVKNLRSDKKQNLEYLEENHGITPEMIDA 125 (133)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHccHHHHHHHHHHhcCCCHHHHHH
Confidence 788888999999999998888763 356777887777777777778888876543
No 88
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=29.36 E-value=93 Score=23.92 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhh
Q 023857 203 ELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNV 244 (276)
Q Consensus 203 ~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~ 244 (276)
+|..+.+++-.+.....+.-|.+++..++.+-.+.+|+.+|+
T Consensus 2 eL~~~~~~l~~~~~~~~~~e~~~~~~~i~~~~~~~Gis~~el 43 (93)
T PF00816_consen 2 ELEAQIKELEKEIEERRKQEREEAIAEIRELMAEYGISPEEL 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTT--HHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHh
Confidence 344444555455555556667777777777777778888877
No 89
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=29.31 E-value=2.5e+02 Score=26.38 Aligned_cols=63 Identities=14% Similarity=0.273 Sum_probs=40.4
Q ss_pred eecCCCcEEEEeecCCCcHHHHHHHHHhCCC-CCCccC--CCCeEEEeCCCCCHHHHHHHHHHHHH
Q 023857 148 INTPDSSSLLIQPYDKSSLKSIEKAIVSSDL-GMTPNN--DGEVIRLTLPQLTSERRKELSKVVAK 210 (276)
Q Consensus 148 Vsv~~~~tL~I~p~D~s~ik~I~kAI~~S~L-glnPq~--Dg~~I~V~iP~lT~E~R~~lvK~aKk 210 (276)
|.-.||..+.++.-.+-....+.+++.+.++ +.+.|. +++.+.|..|..+.|..+++.+..++
T Consensus 37 iDFtGG~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~ 102 (289)
T PRK13022 37 IDFTGGTVIEVRFEQPADLEQVREALEKAGFEDAQVQNFGSSRDVLIRLPPASEELSEKVKKALNK 102 (289)
T ss_pred EeeCCCeEEEEEcCCCCCHHHHHHHHHhcCCCCceEEEcCCCCEEEEEeCCCChHHHHHHHHHHHh
Confidence 3445676677765556678889998887654 333332 34578888887777766655555443
No 90
>PF04344 CheZ: Chemotaxis phosphatase, CheZ; InterPro: IPR007439 This family represents the bacterial chemotaxis phosphatase, CheZ. This protein forms a dimer characterised by a long four-helix bundle, composed of two helices from each monomer. CheZ dephosphorylates CheY in a reaction that is essential to maintain a continuous chemotactic response to environmental changes. It is thought that CheZ's conserved residue Gln 147 orientates a water molecule for nucleophilic attack at the CheY active site. ; GO: 0003824 catalytic activity, 0050920 regulation of chemotaxis, 0009288 bacterial-type flagellum; PDB: 1KMI_Z 2FMK_B 2PMC_F.
Probab=28.48 E-value=4.4e+02 Score=23.70 Aligned_cols=64 Identities=19% Similarity=0.310 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 023857 196 LTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275 (276)
Q Consensus 196 lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~l~k~KeKEll~ 275 (276)
++.+-.++++..+..+..........++...++-+- --..|.||-+.|++|-.+++.=|+.|..
T Consensus 90 ~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~l~eIm~----------------Aq~FQDLTGQ~IkKVv~~l~~vE~~L~~ 153 (214)
T PF04344_consen 90 LEPDEFRELAHETDAFLQQVEENAQQLRAQLTEIMM----------------AQDFQDLTGQRIKKVVNLLQEVEERLVQ 153 (214)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HTTHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----------------HhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777777777777777766542 2378999999999999999999998875
No 91
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=28.29 E-value=3e+02 Score=23.32 Aligned_cols=57 Identities=21% Similarity=0.323 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHH
Q 023857 195 QLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKK 261 (276)
Q Consensus 195 ~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~ 261 (276)
.||.+-....+...++.++.-...|..+|.. ...+++++..+++++..++...|.+.
T Consensus 108 ~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~----------~~~vs~ee~~~~~~~~~~~~k~w~kR 164 (169)
T PF07106_consen 108 EPTNEELREEIEELEEEIEELEEKLEKLRSG----------SKPVSPEEKEKLEKEYKKWRKEWKKR 164 (169)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666552 23588998888888888887777653
No 92
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=28.15 E-value=3.5e+02 Score=24.22 Aligned_cols=29 Identities=10% Similarity=0.256 Sum_probs=17.0
Q ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 023857 240 SEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 268 (276)
Q Consensus 240 seD~~k~~~k~IQkltd~~ik~iD~l~k~ 268 (276)
+++++.....+++.+.+.|..++-.+|..
T Consensus 169 ~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~ 197 (236)
T cd07651 169 SRRDYQNAVKALRELNEIWNREWKAALDD 197 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666555543
No 93
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=26.84 E-value=4.1e+02 Score=22.78 Aligned_cols=27 Identities=26% Similarity=0.100 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023857 205 SKVVAKQAEEGKVAVRNIRRDALKAYE 231 (276)
Q Consensus 205 vK~aKk~~E~aKv~IRniR~~~~k~ik 231 (276)
...+++..++++..-..|+.++.+..+
T Consensus 76 ~~e~e~~L~~Ar~eA~~Ii~~A~~eAe 102 (167)
T PRK08475 76 KEDALKKLEEAKEKAELIVETAKKEAY 102 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555444443
No 94
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=26.39 E-value=2.7e+02 Score=20.61 Aligned_cols=57 Identities=14% Similarity=0.232 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHH
Q 023857 199 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMK 260 (276)
Q Consensus 199 E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik 260 (276)
+.-+.+...++..+..++..|+.++.... .......+.-+.+....+++.|+.+|.+
T Consensus 45 ~el~~l~~~i~~~~~~~~~~lk~l~~~~~-----~~~~~~~~~~~~ri~~nq~~~L~~kf~~ 101 (103)
T PF00804_consen 45 RELDELTDEIKQLFQKIKKRLKQLSKDNE-----DSEGEEPSSNEVRIRKNQVQALSKKFQE 101 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHCTT--SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhcccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 34456777788888888888888888754 1123467778888899999999988865
No 95
>COG1638 DctP TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=25.91 E-value=4e+02 Score=25.55 Aligned_cols=133 Identities=16% Similarity=0.236 Sum_probs=84.6
Q ss_pred CCcCCCcceEEEECC---------------cccccccee---eeecCCCcEEEEeecCCCcHHHHHHHHHhCCCCCCccC
Q 023857 123 SNPAMLDKIEVEYYG---------------SPVSLKSIA---QINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNN 184 (276)
Q Consensus 123 a~P~ild~I~V~~~G---------------~~~pL~~lA---qVsv~~~~tL~I~p~D~s~ik~I~kAI~~S~LglnPq~ 184 (276)
..|+=|.++++.+.+ .++|..||- |-.+-||..=.+..+...-+-.+.+-+..+|..+.|..
T Consensus 160 ~~peDlkGlkiRv~~s~~~~~~~~a~GA~P~pm~f~Evy~aLqtGvVDGqEnp~~~i~~~k~~EVqky~t~tnH~~~~~~ 239 (332)
T COG1638 160 KTPEDLKGLKIRVPQSPLLLAMFKALGANPTPMPFAEVYTALQTGVVDGQENPLSNIYSAKLYEVQKYLTLTNHIYLPLA 239 (332)
T ss_pred CChHHhCCCeeecCCCHHHHHHHHHcCCCCCCCCHHHHHHHHHcCCcccccCCHHHHhhccHHHHhHHhhhcccccccee
Confidence 456667777777664 256666664 33445555544444445567778888888888887763
Q ss_pred C--CCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChhhhhh-hHHHHHHHHHHHHH
Q 023857 185 D--GEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEK-KLSEDNVKD-LSSDLQKLTDEYMK 260 (276)
Q Consensus 185 D--g~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k-~iseD~~k~-~~k~IQkltd~~ik 260 (276)
= ... ..-.+++|.|+.+.+.+++..+..+..+...=++..+.+++ .+ .+.+.+... ..+-.+.+.+.|.+
T Consensus 240 ~~~s~~---~w~~L~~e~q~il~~aa~e~~~~~~~~~~~~e~~~~e~lk~---~Gv~v~~~~~~~~~~~~~~~~~~~~~~ 313 (332)
T COG1638 240 VLVSKA---FWDSLPEEDQTILLEAAKEAAEEQRKLVEELEDELLEKLKE---AGVEVVEPDAAEAFREAAKPVYDEFAK 313 (332)
T ss_pred eEEcHH---HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCEEecCCchHHHHHHHHHHHHHHHh
Confidence 0 111 13467889999999999999888888666666666555543 32 344433333 66677777777777
Q ss_pred H
Q 023857 261 K 261 (276)
Q Consensus 261 ~ 261 (276)
.
T Consensus 314 ~ 314 (332)
T COG1638 314 K 314 (332)
T ss_pred h
Confidence 6
No 96
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=25.53 E-value=4.3e+02 Score=22.60 Aligned_cols=67 Identities=12% Similarity=0.006 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 023857 195 QLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 268 (276)
Q Consensus 195 ~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~l~k~ 268 (276)
.||.|-.++|......+-.. -|.+..+.++.....+-++|+-....-++-|...+.-+.+++..++.
T Consensus 6 ~lT~~g~~~L~~EL~~L~~~-------~r~e~~~~i~~Ar~~GDl~ENaeY~aAk~~~~~~e~rI~~L~~~L~~ 72 (157)
T PRK01885 6 YITREGYARLKQELDYLWRE-------ERPEVTQKVSWAASLGDRSENADYIYGKKRLREIDRRVRFLTKRLEN 72 (157)
T ss_pred ccCHHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHcCCcchhhcHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 48999888887776654221 24444444544444577899998999999999999999999988764
No 97
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=25.24 E-value=3.2e+02 Score=21.03 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 023857 211 QAEEGKVAVRNIRRDALKAYEKLQKE 236 (276)
Q Consensus 211 ~~E~aKv~IRniR~~~~k~ikkl~K~ 236 (276)
.+++.+..|..|+.+. ..|+++...
T Consensus 9 ~v~~I~~~I~~i~~~v-~~l~~l~~~ 33 (117)
T smart00503 9 KVEEIRANIQKISQNV-AELQKLHEE 33 (117)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4566677777777764 456555543
No 98
>PF12298 Bot1p: Eukaryotic mitochondrial regulator protein ; InterPro: IPR021036 This entry represents Ribosomal protein S35, which localises to the mitochondria in live cells and co-fractionates with purified mitochondrial ribosomes. This group of proteins have a novel function in the control of cell respiration by acting on the mitochondrial protein synthesis machinery and a role in mitochondrial integrity. Observations also indicate that in Schizosaccharomyces pombe (Fission yeast), alterations of mitochondrial function are linked to changes in cell cycle and cell morphology control mechanisms [].
Probab=25.07 E-value=2e+02 Score=25.23 Aligned_cols=64 Identities=13% Similarity=0.297 Sum_probs=45.2
Q ss_pred EeCCCCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHH
Q 023857 191 LTLPQLTSERRKELSKVVA-------KQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 263 (276)
Q Consensus 191 V~iP~lT~E~R~~lvK~aK-------k~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD 263 (276)
.+=|.++.+.|+++...+. +++.++.+.+++|.. +=.|+.+++ +..++...+...|..-+.
T Consensus 12 ~~~~~lse~~r~~Iy~~~~~~~~sv~~vS~~ygi~~~RV~A--IvrLkeiE~----------~~~~~~k~l~~~~~~~m~ 79 (172)
T PF12298_consen 12 RSNPVLSEELREQIYEDVMQDGKSVREVSQKYGIKIQRVEA--IVRLKEIEK----------RWKNKGKPLATPYARAME 79 (172)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHH--HHHHHHHHH----------HHhcccChhhHHHHHHHH
Confidence 3457899999999998874 677777777777754 334555543 225666777777777777
Q ss_pred HHH
Q 023857 264 SIY 266 (276)
Q Consensus 264 ~l~ 266 (276)
.||
T Consensus 80 ~Ml 82 (172)
T PF12298_consen 80 RML 82 (172)
T ss_pred HHh
Confidence 777
No 99
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=24.75 E-value=4.5e+02 Score=24.02 Aligned_cols=64 Identities=17% Similarity=0.236 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 023857 196 LTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275 (276)
Q Consensus 196 lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~l~k~KeKEll~ 275 (276)
++.+.-++|+.....+.......-+..+...++-+ .-...|.||-+.|++|-.++..-|+.|+.
T Consensus 102 ~~~~e~~~L~~~~~~fL~~v~~~t~~~~~~L~eI~----------------mAqdFQDLTGQvI~kVi~~v~~vE~~L~~ 165 (214)
T PRK11166 102 IELADARELVTDTRAFLADVPEHTSFTNAQLLEIM----------------MAQDFQDLTGQVIKRMMDVIQEIERQLLM 165 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH----------------HHccchHhHhHHHHHHHHHHHHHHHHHHH
Confidence 34566666777777777766666666666655433 23478999999999999999999998864
No 100
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=23.81 E-value=46 Score=21.66 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=14.3
Q ss_pred EeCCCCCHHHHHHHHHHHHHH
Q 023857 191 LTLPQLTSERRKELSKVVAKQ 211 (276)
Q Consensus 191 V~iP~lT~E~R~~lvK~aKk~ 211 (276)
|++|+.. ..|++|++.|++.
T Consensus 18 i~~~~~~-~~rd~Ll~~~k~~ 37 (38)
T PF10281_consen 18 IPVPKSA-KTRDELLKLAKKN 37 (38)
T ss_pred CCCCCCC-CCHHHHHHHHHHh
Confidence 3455544 7899999998863
No 101
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.96 E-value=1.7e+02 Score=25.32 Aligned_cols=11 Identities=27% Similarity=0.652 Sum_probs=4.3
Q ss_pred hhhhhHHHHHH
Q 023857 243 NVKDLSSDLQK 253 (276)
Q Consensus 243 ~~k~~~k~IQk 253 (276)
++..+++++++
T Consensus 162 ei~~lk~el~~ 172 (192)
T PF05529_consen 162 EIEKLKKELEK 172 (192)
T ss_pred HHHHHHHHHHH
Confidence 33333444333
No 102
>PF10835 DUF2573: Protein of unknown function (DUF2573); InterPro: IPR020393 This entry contains proteins with no known function.
Probab=22.90 E-value=25 Score=27.34 Aligned_cols=32 Identities=16% Similarity=0.397 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcCCCcceEEE
Q 023857 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVE 134 (276)
Q Consensus 103 kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~ 134 (276)
+++.-++.|-+.+..+.+|-.||++-|.|++=
T Consensus 3 ~l~eq~dgLveKytELL~Ge~~~e~~EkVk~W 34 (82)
T PF10835_consen 3 KLQEQFDGLVEKYTELLLGETSPEMKEKVKQW 34 (82)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 45556777888889999999999999988763
No 103
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.40 E-value=1.9e+02 Score=29.16 Aligned_cols=67 Identities=21% Similarity=0.272 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhH--HHHHHHHHHHHHHHHHHHHHHHh
Q 023857 205 SKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLS--SDLQKLTDEYMKKIDSIYKQKEK 271 (276)
Q Consensus 205 vK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~--k~IQkltd~~ik~iD~l~k~KeK 271 (276)
++.|+++++.-+..+|.-|.+..+.++.+.-...+.+|..+... -++=.+..+|-.+....|.++.+
T Consensus 81 ~h~A~~I~~~R~~~~r~q~~~l~~~~~n~~~~vkf~~df~~~s~~~Gd~VeIvE~~~eeme~~f~a~hr 149 (514)
T KOG3130|consen 81 AHQAVGIVEHRKEHVRKQIDDLKKVMKNFESRVKFTEDFQKMSDAAGDIVEIVEEIKEEMEFEFKAKHR 149 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcccHhhccCCCCCeehhHHhhhhHHHHHHHHHHH
Confidence 56788888888888999998888888777655567777544221 23445667777777777777654
No 104
>PF03982 DAGAT: Diacylglycerol acyltransferase ; InterPro: IPR007130 The terminal step of triacylglycerol (TAG) formation is catalysed by the enzyme diacylglycerol acyltransferase (DAGAT) [, ].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=22.26 E-value=97 Score=29.39 Aligned_cols=21 Identities=19% Similarity=0.612 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023857 248 SSDLQKLTDEYMKKIDSIYKQ 268 (276)
Q Consensus 248 ~k~IQkltd~~ik~iD~l~k~ 268 (276)
+++||++++.|++++.++|++
T Consensus 261 ~e~Vd~~H~~Y~~~L~~LFd~ 281 (297)
T PF03982_consen 261 QEDVDKLHARYIEALRELFDK 281 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999975
No 105
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=22.12 E-value=5e+02 Score=22.12 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=16.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023857 241 EDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKE 272 (276)
Q Consensus 241 eD~~k~~~k~IQkltd~~ik~iD~l~k~KeKE 272 (276)
++.....+.+++.+......+|..-.+.-..+
T Consensus 90 ~e~~~~a~~e~~r~~~~a~~~I~~e~~~a~~~ 121 (161)
T COG0711 90 EEIKAEAEEELERIKEAAEAEIEAEKERALEE 121 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555544444333
No 106
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=22.05 E-value=69 Score=26.75 Aligned_cols=46 Identities=20% Similarity=0.225 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHH
Q 023857 200 RRKELSKVVAKQAEEGKVA--VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQ 252 (276)
Q Consensus 200 ~R~~lvK~aKk~~E~aKv~--IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQ 252 (276)
.|++|+..|.++.++-++. =+.-|..+++ .|+|++||+..+-+...
T Consensus 1 ~Re~li~~A~~FL~~p~V~~sp~~~k~~FL~-------sKGLt~~EI~~al~~a~ 48 (136)
T PF04695_consen 1 MREDLIEQAVKFLQDPKVRNSPLEKKIAFLE-------SKGLTEEEIDEALGRAG 48 (136)
T ss_dssp -HHHHHHHHHHHHCTTTCCCS-HHHHHHHHH-------HCT--HHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhCCcccccCCHHHHHHHHH-------cCCCCHHHHHHHHHhcC
Confidence 4899999999999886642 2333444432 47999998776665543
No 107
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=21.97 E-value=2.4e+02 Score=30.08 Aligned_cols=43 Identities=33% Similarity=0.485 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHH
Q 023857 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTD 256 (276)
Q Consensus 214 ~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd 256 (276)
++-...|.=|++.-..++++..+-...||....++.++|.+-+
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444677777788788888877666778888888888876654
No 108
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=21.64 E-value=3.9e+02 Score=20.79 Aligned_cols=35 Identities=11% Similarity=0.166 Sum_probs=21.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 023857 241 EDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275 (276)
Q Consensus 241 eD~~k~~~k~IQkltd~~ik~iD~l~k~KeKEll~ 275 (276)
..-......+|+.|.+.|-+..++++..--..+++
T Consensus 69 ~~l~~et~~~i~~i~~~~~~~~~~vv~~ll~~V~~ 103 (105)
T PF03179_consen 69 EELEKETEEKIEEIKKSASKNKDKVVDMLLSRVCD 103 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcC
Confidence 34445667778888888888888777665554444
No 109
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=21.57 E-value=5.9e+02 Score=27.30 Aligned_cols=63 Identities=16% Similarity=0.147 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHH
Q 023857 195 QLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDE 257 (276)
Q Consensus 195 ~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~ 257 (276)
+.+.|.++-+.+.++.+-|++=...=.+|..+.++++-++..+.---+++..++++++++.+.
T Consensus 532 p~~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ 594 (717)
T PF10168_consen 532 PSPQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRES 594 (717)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899988888888887776444445666666655444322211123334444444444333
No 110
>PRK01919 tatB sec-independent translocase; Provisional
Probab=21.53 E-value=5.7e+02 Score=22.62 Aligned_cols=60 Identities=13% Similarity=0.208 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 023857 203 ELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 267 (276)
Q Consensus 203 ~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~l~k 267 (276)
.++..++.+.+++|..|.+-= -.+.++++.++ -++..+.++..|++-.++..+.+++.+.
T Consensus 34 k~i~k~Rr~~~d~K~ev~~E~--e~dElrk~~~~---~e~~~~~v~~si~~~~~~~~~~~~~~~~ 93 (169)
T PRK01919 34 ALFGRAQRYINDVKAEVSREI--ELDELRKMKTD---FESAARDVENTIHDNLSEHESDLNDAWN 93 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 355666777777776665331 22344444321 1345556677777777777777776554
No 111
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=21.50 E-value=6.2e+02 Score=23.03 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=23.3
Q ss_pred CCCChhhhhhhHHHHHHHHHHHHHHHHHH
Q 023857 237 KKLSEDNVKDLSSDLQKLTDEYMKKIDSI 265 (276)
Q Consensus 237 k~iseD~~k~~~k~IQkltd~~ik~iD~l 265 (276)
...|++++.+++....+..++|.+.++..
T Consensus 149 ~~~s~~~~~K~~~K~~Ka~~e~~~~ve~y 177 (233)
T cd07649 149 SNKTEEDIKKARRKSTQAGDDLMRCVDLY 177 (233)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888888888888877754
No 112
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=21.39 E-value=1.9e+02 Score=27.09 Aligned_cols=48 Identities=19% Similarity=0.222 Sum_probs=34.9
Q ss_pred cHHHHHHHHHhCC------CCCCccCCCC--eEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 023857 165 SLKSIEKAIVSSD------LGMTPNNDGE--VIRLTLPQLTSERRKELSKVVAKQAEE 214 (276)
Q Consensus 165 ~ik~I~kAI~~S~------LglnPq~Dg~--~I~V~iP~lT~E~R~~lvK~aKk~~E~ 214 (276)
..-...+++.+++ +|||||.+.. ..++ .--|.+..+++++.++.+.|.
T Consensus 118 ~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i--~grt~~~a~~~i~ra~a~~eA 173 (264)
T PRK00311 118 EVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKV--QGRDEEAAEKLLEDAKALEEA 173 (264)
T ss_pred HHHHHHHHHHHCCCCEeeeecccceeecccCCeee--ecCCHHHHHHHHHHHHHHHHC
Confidence 4556777888887 5899997632 2343 356888889999999988765
No 113
>PF03449 GreA_GreB_N: Transcription elongation factor, N-terminal; InterPro: IPR022691 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A 2ETN_C 2P4V_B.
Probab=21.19 E-value=3.6e+02 Score=20.23 Aligned_cols=66 Identities=14% Similarity=0.208 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 023857 196 LTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 268 (276)
Q Consensus 196 lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~l~k~ 268 (276)
+|.+..+.|......+-.. -|-+..+.++.....|-+||+-....-++-|...+.-|.+++.++..
T Consensus 6 lT~~g~~~L~~EL~~L~~~-------~rpe~~~~i~~Ar~~GDlsENaeY~aAke~q~~le~rI~~Le~~l~~ 71 (74)
T PF03449_consen 6 LTPEGYEKLQAELEHLKNV-------ERPEIAEEIAEAREQGDLSENAEYHAAKERQAFLEARIRELEERLAR 71 (74)
T ss_dssp EEHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCCSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6777777776666543322 33345555555556689999999999999999999999999988764
No 114
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=21.14 E-value=6.4e+02 Score=23.05 Aligned_cols=28 Identities=4% Similarity=0.157 Sum_probs=19.2
Q ss_pred CChhhhhhhHHHHHHHHHHHHHHHHHHH
Q 023857 239 LSEDNVKDLSSDLQKLTDEYMKKIDSIY 266 (276)
Q Consensus 239 iseD~~k~~~k~IQkltd~~ik~iD~l~ 266 (276)
.+.+++.++...+++..+.|.+.++..-
T Consensus 147 ~s~k~leK~~~K~~ka~~~y~~~~~ky~ 174 (261)
T cd07674 147 VPQKELEKAELKTKKAAESLRGSVEKYN 174 (261)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777766666543
No 115
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=21.13 E-value=1.2e+02 Score=21.45 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=17.9
Q ss_pred EEeCCCCCHHHHHHHHHHHHHH
Q 023857 190 RLTLPQLTSERRKELSKVVAKQ 211 (276)
Q Consensus 190 ~V~iP~lT~E~R~~lvK~aKk~ 211 (276)
.+.+|||+.+.|+-+-+.|..+
T Consensus 18 ~~~fppm~~~~R~~vH~lA~~~ 39 (58)
T cd02646 18 SLSFPPMDKHGRKTIHKLANCY 39 (58)
T ss_pred eEecCCCCHHHHHHHHHHHHHc
Confidence 5699999999999777777654
No 116
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=21.02 E-value=7.9e+02 Score=24.05 Aligned_cols=65 Identities=25% Similarity=0.368 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023857 199 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKE 270 (276)
Q Consensus 199 E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~l~k~Ke 270 (276)
|.-+++.+.+......++..|-.+..+.-+.+.++.. -.+.+..+++.+..+|-..-+.+-+.++
T Consensus 223 eqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~s-------REk~iN~qle~l~~eYr~~~~~ls~~~~ 287 (359)
T PF10498_consen 223 EQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIES-------REKYINNQLEPLIQEYRSAQDELSEVQE 287 (359)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4445667778888899999999999999888888764 2355666777777776666665554443
No 117
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=20.97 E-value=5e+02 Score=21.77 Aligned_cols=67 Identities=12% Similarity=0.273 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 023857 195 QLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEK 271 (276)
Q Consensus 195 ~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~l~k~KeK 271 (276)
.+|+..++++.+.........-..+..+.-...+.++..++... ..++.+...|-.+.......|..
T Consensus 12 ivTe~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~----------~~~~~i~~q~~~e~~~r~e~k~~ 78 (131)
T PF11068_consen 12 IVTEKWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNA----------QQIQSIQQQFEQEKQERLEQKNQ 78 (131)
T ss_dssp E--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch----------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999998888888888888888887776654321 56666666666666666655543
No 118
>PRK11546 zraP zinc resistance protein; Provisional
Probab=20.82 E-value=5.4e+02 Score=22.07 Aligned_cols=63 Identities=10% Similarity=0.123 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhcCCCChhh-hhhhHHHHHHHHHHHHHHH
Q 023857 195 QLTSERRKELSKVVAKQAE---EGKVAVRNIRRDALKAYEKLQKEKKLSEDN-VKDLSSDLQKLTDEYMKKI 262 (276)
Q Consensus 195 ~lT~E~R~~lvK~aKk~~E---~aKv~IRniR~~~~k~ikkl~K~k~iseD~-~k~~~k~IQkltd~~ik~i 262 (276)
+||+|..+++-+...++.. .-|..|..-|.+.+-.+. ..-+++. ++.+.+||+.|.++...+=
T Consensus 43 ~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~-----~~~pD~~kI~aL~kEI~~Lr~kL~e~r 109 (143)
T PRK11546 43 PLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLT-----ANPPDSSKINAVAKEMENLRQSLDELR 109 (143)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888988876665554443 346666666666654332 2223333 7788888888887655443
No 119
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=20.70 E-value=1.8e+02 Score=27.04 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=34.7
Q ss_pred cHHHHHHHHHhCC------CCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 023857 165 SLKSIEKAIVSSD------LGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214 (276)
Q Consensus 165 ~ik~I~kAI~~S~------LglnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~ 214 (276)
..-...+|+.+++ +|||||.+...=-..+.--|.+..++++..++.+.|.
T Consensus 115 ~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~A 170 (254)
T cd06557 115 EVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEA 170 (254)
T ss_pred HHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHC
Confidence 4556677777877 7999997654211223345788889999999888665
No 120
>PF14591 AF0941-like: AF0941-like; PDB: 1YOZ_B.
Probab=20.41 E-value=2.8e+02 Score=23.39 Aligned_cols=53 Identities=19% Similarity=0.333 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHH---HHHHHHHHHHHHHHHhhhhc
Q 023857 222 IRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLT---DEYMKKIDSIYKQKEKELLK 275 (276)
Q Consensus 222 iR~~~~k~ikkl~K~k~iseD~~k~~~k~IQklt---d~~ik~iD~l~k~KeKEll~ 275 (276)
-|.|...-+..+ +.|.+++++...+-+++..+. +.|...+-+++..+|+++.+
T Consensus 42 Fr~D~e~Il~~~-~~Gdi~eEEA~~ll~eL~~~asqL~~~~~~~~e~l~~le~k~~k 97 (127)
T PF14591_consen 42 FRSDLEDILEDY-KSGDIDEEEALQLLDELKSYASQLQEHYFRVRELLEDLERKIQK 97 (127)
T ss_dssp HHHHHHHHHHHH-HTTSS-HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCTT-----
T ss_pred HHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556665555544 468999999988888887765 56888888888888887653
No 121
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=20.32 E-value=3.8e+02 Score=20.14 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHHH
Q 023857 194 PQLTSERRKELSKVVAKQAEEG---KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 266 (276)
Q Consensus 194 P~lT~E~R~~lvK~aKk~~E~a---Kv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~l~ 266 (276)
..+|.|.++++-....+...+. +..++..|.+....+ ......++.+..+.+++..+..+......+.+
T Consensus 40 l~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll----~~~~~D~~~i~a~~~~~~~~~~~l~~~~~~~~ 111 (125)
T PF13801_consen 40 LNLTPEQQAKLRALMDEFRQEMRALRQELRAARQELRALL----AAPPPDEAAIEALLEEIREAQAELRQERLEHL 111 (125)
T ss_dssp S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCSSS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999998887777666554 445555555555443 23456777777777777777666665555443
Done!