Query 023857
Match_columns 276
No_of_seqs 130 out of 1055
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 13:58:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023857.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023857hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dd5_A Ribosome recycling fact 100.0 7.6E-63 2.6E-67 431.2 23.7 182 95-276 4-185 (185)
2 1ise_A Ribosome recycling fact 100.0 8E-63 2.8E-67 431.1 22.8 182 95-276 4-185 (185)
3 1is1_A Ribosome recycling fact 100.0 8.9E-63 3.1E-67 430.9 23.1 182 95-276 4-185 (185)
4 1wqg_A Ribosome recycling fact 100.0 9.2E-63 3.2E-67 430.8 22.9 182 95-276 4-185 (185)
5 4gfq_A Ribosome-recycling fact 100.0 1.4E-62 4.9E-67 435.6 21.7 183 94-276 27-209 (209)
6 1eh1_A Ribosome recycling fact 100.0 2.3E-62 7.9E-67 428.2 20.2 182 94-275 4-185 (185)
7 1ge9_A Ribosome recycling fact 100.0 8.6E-61 2.9E-65 417.9 21.5 179 94-276 6-184 (184)
8 1wih_A Mitochondrial ribosome 100.0 2E-32 6.9E-37 211.2 3.8 82 121-202 1-83 (84)
9 3lf9_A 4E10_D0_1IS1A_001_C (T1 100.0 2E-28 7E-33 198.5 16.4 110 95-276 4-113 (121)
10 3lhp_S 4E10_D0_1ISEA_004_N (T9 99.9 9.2E-28 3.2E-32 195.9 8.7 89 185-275 34-122 (123)
11 4hhu_A OR280; engineered prote 86.1 8 0.00027 31.5 10.3 92 99-216 53-151 (170)
12 3lay_A Zinc resistance-associa 83.6 15 0.00053 31.1 11.6 74 195-272 67-143 (175)
13 3onj_A T-snare VTI1; helix, HA 83.3 5.7 0.00019 30.3 8.0 57 193-256 24-94 (97)
14 3tuf_A Stage III sporulation p 69.8 22 0.00074 30.9 8.7 60 210-269 83-144 (197)
15 3fxb_A Trap dicarboxylate tran 63.8 36 0.0012 30.6 9.4 69 195-263 236-307 (326)
16 4e81_A Chaperone protein DNAK; 56.9 77 0.0026 27.2 9.9 78 194-273 117-203 (219)
17 2kl8_A OR15; structural genomi 54.6 12 0.0004 27.3 3.5 51 165-215 11-68 (85)
18 4hhu_A OR280; engineered prote 53.0 21 0.00072 29.0 5.1 61 156-216 3-70 (170)
19 1j1d_C Troponin I, TNI; THIN f 52.5 92 0.0032 25.2 9.3 65 195-266 10-78 (133)
20 1vcs_A Vesicle transport throu 50.0 24 0.00082 27.0 4.9 33 194-226 29-61 (102)
21 2pfz_A Putative exported prote 45.3 1.5E+02 0.0053 25.7 10.7 68 195-262 219-287 (301)
22 1j1e_C Troponin I, TNI; THIN f 41.8 1.4E+02 0.0047 25.4 8.8 65 195-266 10-78 (180)
23 3u65_B TP33 protein; tetratric 41.6 1.3E+02 0.0043 27.1 9.2 68 194-261 238-306 (328)
24 1l6x_B Minimized B-domain of p 39.2 16 0.00055 23.0 1.9 20 191-210 13-32 (34)
25 2fqm_A Phosphoprotein, P prote 37.7 50 0.0017 24.1 4.6 32 185-216 16-48 (75)
26 3m20_A 4-oxalocrotonate tautom 36.9 62 0.0021 21.7 4.9 27 188-214 2-28 (62)
27 2kho_A Heat shock protein 70; 36.3 1.3E+02 0.0045 29.4 9.0 61 194-256 505-574 (605)
28 2pfy_A Putative exported prote 36.1 1.8E+02 0.0061 25.3 9.1 68 195-262 220-288 (301)
29 1u00_A HSC66, chaperone protei 35.8 1.9E+02 0.0065 24.6 9.0 61 194-256 114-183 (227)
30 4b9q_A Chaperone protein DNAK; 35.0 1.5E+02 0.0051 29.0 9.2 62 194-257 505-575 (605)
31 2qyw_A Vesicle transport throu 31.8 1.3E+02 0.0043 22.8 6.4 33 194-226 39-72 (102)
32 4efa_E V-type proton ATPase su 31.5 2.4E+02 0.0082 23.9 9.8 33 199-231 12-44 (233)
33 1ixm_A SPO0B, protein (sporula 29.8 50 0.0017 27.8 4.2 64 196-263 4-67 (192)
34 2vpn_A Periplasmic substrate b 29.6 1.7E+02 0.0057 25.7 7.8 66 195-261 222-291 (316)
35 2hzl_A Trap-T family sorbitol/ 28.5 3.2E+02 0.011 24.4 10.5 63 196-261 257-323 (365)
36 2jhe_A Transcription regulator 28.3 1E+02 0.0035 23.9 5.6 57 155-212 2-62 (190)
37 3ff5_A PEX14P, peroxisomal bio 27.7 76 0.0026 21.9 4.0 47 194-247 2-50 (54)
38 1usp_A Organic hydroperoxide r 26.3 56 0.0019 25.5 3.6 26 188-213 97-122 (139)
39 2j69_A Bacterial dynamin-like 26.1 3.6E+02 0.012 26.8 10.4 68 200-272 589-656 (695)
40 1x4t_A Hypothetical protein LO 25.2 2.1E+02 0.0071 21.8 6.4 44 210-257 24-67 (92)
41 2zzv_A ABC transporter, solute 24.3 3.6E+02 0.012 24.0 9.2 63 195-260 263-329 (361)
42 2bjo_A Organic hydroperoxide r 24.2 64 0.0022 25.0 3.6 26 188-213 95-120 (136)
43 3abh_A Pacsin2, protein kinase 24.2 3.5E+02 0.012 23.4 9.1 66 204-269 93-163 (312)
44 1qwi_A OSMC, osmotically induc 23.8 68 0.0023 25.2 3.7 26 188-213 101-126 (143)
45 1n2f_A Organic hydroperoxide r 23.4 67 0.0023 25.2 3.6 26 188-213 100-125 (142)
46 3hd7_A Vesicle-associated memb 23.0 1.3E+02 0.0046 22.2 5.0 16 248-263 11-26 (91)
47 3d2f_A Heat shock protein homo 22.8 3.8E+02 0.013 26.6 9.7 62 194-256 522-592 (675)
48 2xwv_A Sialic acid-binding per 22.4 2.4E+02 0.0081 24.9 7.5 67 194-263 224-291 (312)
49 2ql8_A Putative redox protein; 22.3 59 0.002 25.6 3.1 26 188-213 97-122 (143)
50 3t98_A Nuclear pore complex pr 22.1 1.7E+02 0.006 19.8 4.9 38 82-119 12-49 (51)
51 3iv1_A Tumor susceptibility ge 21.9 2.4E+02 0.0083 20.7 8.1 22 203-224 11-32 (78)
52 1ytz_I Troponin I; muscle, THI 21.2 3.8E+02 0.013 22.7 8.3 67 195-269 8-78 (182)
53 1zb9_A OHR, organic hydroperox 20.7 83 0.0028 24.7 3.6 26 188-213 101-126 (143)
54 1gmj_A ATPase inhibitor; coile 20.7 2.7E+02 0.0092 20.8 9.0 37 210-253 33-69 (84)
55 1zda_A Mini protein A domain, 20.2 23 0.00078 22.9 0.1 19 191-209 18-36 (38)
No 1
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=100.00 E-value=7.6e-63 Score=431.20 Aligned_cols=182 Identities=42% Similarity=0.757 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHHHHH
Q 023857 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIV 174 (276)
Q Consensus 95 ~i~~~~~~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~kAI~ 174 (276)
.++.+++++|++++++|+.+|++||+||+||++||+|.|+|||.++||++||+|+++++|+|+|+|||++++++|++||+
T Consensus 4 ~~~~~~~~~M~k~ie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~ 83 (185)
T 1dd5_A 4 PFIKEAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWDKSVLSLIEKAIN 83 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEECSTTEEEEEESSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEECCCcccHHHceeeecCCCCEEEEEecCHhHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHH
Q 023857 175 SSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKL 254 (276)
Q Consensus 175 ~S~LglnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkl 254 (276)
.|||||||++||++|+|+||+||+|+|++|+|.|++++|+||++|||||+++++.+|+++|++.+|||+.++++++||++
T Consensus 84 ~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkl 163 (185)
T 1dd5_A 84 ASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKL 163 (185)
T ss_dssp HSSSCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcC
Q 023857 255 TDEYMKKIDSIYKQKEKELLKV 276 (276)
Q Consensus 255 td~~ik~iD~l~k~KeKEll~v 276 (276)
||+|+++||+++++||||||+|
T Consensus 164 td~~i~~id~~~~~KEkEim~v 185 (185)
T 1dd5_A 164 TDEFIEKLDEVFEIKKEEIMEF 185 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999986
No 2
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=100.00 E-value=8e-63 Score=431.05 Aligned_cols=182 Identities=45% Similarity=0.742 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHHHHH
Q 023857 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIV 174 (276)
Q Consensus 95 ~i~~~~~~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~kAI~ 174 (276)
.++.+++++|++++++|+.+|++||+||+||++||+|.|+|||.++||++||+|+++++|+|+|+|||++++++|++||+
T Consensus 4 ~~~~~~~~~M~k~ie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~ 83 (185)
T 1ise_A 4 DIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIM 83 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCSSCCGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEeccCHhHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHH
Q 023857 175 SSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKL 254 (276)
Q Consensus 175 ~S~LglnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkl 254 (276)
.|||||||++||++|+|+||+||+|+|++|+|.|++++|+||++|||||+++++.+|+++|++.+|||+.++++++||++
T Consensus 84 ~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkl 163 (185)
T 1ise_A 84 ASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVGRDANDKVKALLKDKEISEDDDRRSQDDVQKL 163 (185)
T ss_dssp TTCTTCCCEESSSEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred HcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcC
Q 023857 255 TDEYMKKIDSIYKQKEKELLKV 276 (276)
Q Consensus 255 td~~ik~iD~l~k~KeKEll~v 276 (276)
||+|+++||+++++||||||+|
T Consensus 164 td~~i~~id~~~~~KEkEim~v 185 (185)
T 1ise_A 164 TDAAIKKIEAALADKEAELMQF 185 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999986
No 3
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=100.00 E-value=8.9e-63 Score=430.89 Aligned_cols=182 Identities=46% Similarity=0.753 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHHHHH
Q 023857 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIV 174 (276)
Q Consensus 95 ~i~~~~~~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~kAI~ 174 (276)
.++.+++++|++++++|+.+|++||+||+||++||+|.|+|||.++||++||+|+++++|+|+|+|||++++++|++||+
T Consensus 4 ~~~~~~~~~M~kaie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~ 83 (185)
T 1is1_A 4 EIKKDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLAITVFDKELTQKVEKAIM 83 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCSSCCGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEEecCHhHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHH
Q 023857 175 SSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKL 254 (276)
Q Consensus 175 ~S~LglnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkl 254 (276)
.|||||||++||++|+|+||+||+|+|++|+|.|++++|+||++|||||+++++.+|+++|++.+|||+.++++++||++
T Consensus 84 ~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkl 163 (185)
T 1is1_A 84 MSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKL 163 (185)
T ss_dssp HTTSSCCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcC
Q 023857 255 TDEYMKKIDSIYKQKEKELLKV 276 (276)
Q Consensus 255 td~~ik~iD~l~k~KeKEll~v 276 (276)
||+|+++||+++++||||||+|
T Consensus 164 td~~i~~id~~~~~KEkEim~v 185 (185)
T 1is1_A 164 TDVAVKKIDEVLAAKEKELMEV 185 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999986
No 4
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=100.00 E-value=9.2e-63 Score=430.80 Aligned_cols=182 Identities=42% Similarity=0.764 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHHHHH
Q 023857 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIV 174 (276)
Q Consensus 95 ~i~~~~~~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~kAI~ 174 (276)
.++.+++++|++++++|+.+|++||+||+||++||+|.|+|||.++||++||+|+++++|+|+|+|||++++++|++||+
T Consensus 4 ~~~~~~~~~M~kai~~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~ 83 (185)
T 1wqg_A 4 EALFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYEANQLRAIETAIR 83 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEEEETTEEEEEESSGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEEeCCHhHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHH
Q 023857 175 SSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKL 254 (276)
Q Consensus 175 ~S~LglnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkl 254 (276)
.|||||||++||++|+|+||+||+|+|++|+|.|++++|+||++|||||+++++.+|+++|++.+|||+.++++++||++
T Consensus 84 ~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkl 163 (185)
T 1wqg_A 84 NSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKT 163 (185)
T ss_dssp HSTTCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcC
Q 023857 255 TDEYMKKIDSIYKQKEKELLKV 276 (276)
Q Consensus 255 td~~ik~iD~l~k~KeKEll~v 276 (276)
||+|+++||+++++||||||+|
T Consensus 164 td~~i~~id~~~~~KEkEim~v 185 (185)
T 1wqg_A 164 THQYVTQIDELVKHKEGELLEV 185 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999986
No 5
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=100.00 E-value=1.4e-62 Score=435.62 Aligned_cols=183 Identities=46% Similarity=0.792 Sum_probs=180.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHHHH
Q 023857 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAI 173 (276)
Q Consensus 94 ~~i~~~~~~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~kAI 173 (276)
..++.+++++|++++++|+.+|++||+|||||+|||+|.|+|||+++||++||+|+++++++|+|+|||++++++|++||
T Consensus 27 ~~il~~a~ekM~kaie~lk~el~~iRtGRA~p~lLd~I~VdyYG~~tPL~qvA~Isvpe~rtl~I~p~D~s~i~~IekAI 106 (209)
T 4gfq_A 27 QQVLKFSNEKMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAI 106 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCSBSCCGGGGTTCEEESSSCEEEGGGGEEEEEEETTEEEEEESSGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHhCCeEEeeCCCccchhhhheeecCCCCEEEEecCcHhhHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHH
Q 023857 174 VSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQK 253 (276)
Q Consensus 174 ~~S~LglnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQk 253 (276)
++|||||||++||+.|+|+||+||+|+|++|+|.|++.+|+||++|||||+++++.+|+++|++.+|||+.++++++||+
T Consensus 107 ~~S~LglnP~~dG~~Iri~iP~LTeErRkelvK~ak~~~E~aKvaIRniRrda~~~lKk~~K~~~isEDe~k~~e~eiQk 186 (209)
T 4gfq_A 107 LKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQK 186 (209)
T ss_dssp HHHTSSCCCEECSSCEEEECCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHcCCCCCCCcCCCceeeeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcC
Q 023857 254 LTDEYMKKIDSIYKQKEKELLKV 276 (276)
Q Consensus 254 ltd~~ik~iD~l~k~KeKEll~v 276 (276)
+||+|+++||+++++||||||+|
T Consensus 187 lTd~~i~~iD~~l~~KEkEim~V 209 (209)
T 4gfq_A 187 ETDKYIAKVDEIAKNKEKEIMEV 209 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999987
No 6
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=100.00 E-value=2.3e-62 Score=428.16 Aligned_cols=182 Identities=44% Similarity=0.785 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHHHH
Q 023857 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAI 173 (276)
Q Consensus 94 ~~i~~~~~~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~kAI 173 (276)
+.++.+++++|++++++|+.+|++||+||+||++||+|.|+|||.++||++||+|+++++++|+|+|||++++++|++||
T Consensus 4 ~~~~~~~~~~M~kaie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI 83 (185)
T 1eh1_A 4 KELYAETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQNALKAIEKAI 83 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCSSCCSGGGTSCEEEETTEEEEGGGTCEEECSSTTEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEecCCHhHHHHHHHHH
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHH
Q 023857 174 VSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQK 253 (276)
Q Consensus 174 ~~S~LglnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQk 253 (276)
+.|||||||++||++|+|+||+||+|+|++|+|.|++++|+||++|||||+++++.+|+++|++.+|||+.++++++||+
T Consensus 84 ~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQk 163 (185)
T 1eh1_A 84 RDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQK 163 (185)
T ss_dssp SSSTTCCCEEEETTEEEEECCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 023857 254 LTDEYMKKIDSIYKQKEKELLK 275 (276)
Q Consensus 254 ltd~~ik~iD~l~k~KeKEll~ 275 (276)
+||+|+++||+++++||||||+
T Consensus 164 ltd~~i~~id~~~~~KEkEim~ 185 (185)
T 1eh1_A 164 ITDEFIAKADQLAEKKEQEILG 185 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999996
No 7
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=100.00 E-value=8.6e-61 Score=417.94 Aligned_cols=179 Identities=40% Similarity=0.699 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHHHH
Q 023857 94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAI 173 (276)
Q Consensus 94 ~~i~~~~~~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~kAI 173 (276)
+.++.+++++|++++++|+.+|+++|+||+||++||+|.|+|||.++||++||+|+++++|+|+|+|||++++++|++||
T Consensus 6 ~~~~~~~~~~M~kaie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~tpL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI 85 (184)
T 1ge9_A 6 EDIFKEAEKDMKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPEHNQIVIQVWDQNAVPAIEKAI 85 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCTTTCSCCCEESSSCEECTTTTCEEECSSSSEEEEECSSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEECCCCccHHHceeeecCCCCEEEEEecCHHHHHHHHHHH
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHH
Q 023857 174 VSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQK 253 (276)
Q Consensus 174 ~~S~LglnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQk 253 (276)
+. ||||||++||++|+|+||+||+|+|++++|.|++.+|+||++|||||+++++.+|+++ + +|||+.++++++||+
T Consensus 86 ~~-dLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~--k-iseD~~k~~e~~iQk 161 (184)
T 1ge9_A 86 RE-ELNLNPTVQGNVIRVTLPPLTEERRRELVRLLHKITEEARVRVRNVRREAKEMIEELE--G-ISEDEKKRALERLQK 161 (184)
T ss_dssp HH-HHCSCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST--T-CCHHHHHHHHHHHHH
T ss_pred Hh-CCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C-CChhHHHHHHHHHHH
Confidence 99 9999999999999999999999999999999999999999999999999999999986 4 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcC
Q 023857 254 LTDEYMKKIDSIYKQKEKELLKV 276 (276)
Q Consensus 254 ltd~~ik~iD~l~k~KeKEll~v 276 (276)
+||+|+++||+++++||||||+|
T Consensus 162 ltd~~i~~id~~~~~KEkEim~v 184 (184)
T 1ge9_A 162 LTDKYIDEINKLMEAKEKEIMSV 184 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999986
No 8
>1wih_A Mitochondrial ribosome recycling factor; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.67.3.1
Probab=99.97 E-value=2e-32 Score=211.23 Aligned_cols=82 Identities=28% Similarity=0.413 Sum_probs=80.8
Q ss_pred CCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecC-CCcHHHHHHHHHhCCCCCCccCCCCeEEEeCCCCCHH
Q 023857 121 GRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD-KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSE 199 (276)
Q Consensus 121 GRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D-~s~ik~I~kAI~~S~LglnPq~Dg~~I~V~iP~lT~E 199 (276)
||+||++||+|+|+|||.++||++||+|+++++|+|+|+||| ++++++|+|||++|||||||++||++|||+||+||+|
T Consensus 1 GRa~p~lld~I~V~yyG~~~pL~qvA~isv~~~r~l~I~p~D~~~~~~~IekAI~~S~LglnP~~dG~~Iri~iP~lTeE 80 (84)
T 1wih_A 1 GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTSG 80 (84)
T ss_dssp CCSSSCTTSSCEEEETTEEEEHHHHSEEEEEETTEEEEECTTCTTSHHHHHHHHHTTTCCCCCEEETTEEEEECCCSSCS
T ss_pred CCCChHHhCCEEEEECCCCccHHHceEEEcCCCCEEEEEecccHHHHHHHHHHHHHCCCCCCcccCCCEEEEeCCCCChh
Confidence 899999999999999999999999999999999999999988 8999999999999999999999999999999999999
Q ss_pred HHH
Q 023857 200 RRK 202 (276)
Q Consensus 200 ~R~ 202 (276)
+|+
T Consensus 81 rR~ 83 (84)
T 1wih_A 81 PSS 83 (84)
T ss_dssp SCC
T ss_pred ccC
Confidence 996
No 9
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=99.96 E-value=2e-28 Score=198.53 Aligned_cols=110 Identities=44% Similarity=0.633 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHHHHH
Q 023857 95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIV 174 (276)
Q Consensus 95 ~i~~~~~~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~kAI~ 174 (276)
.|-.+++.+|+++++.|+.+++++||||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------- 31 (121)
T 3lf9_A 4 EIKKDAQERMDKSVEALKNNLSKVRTGG---------------------------------------------------- 31 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCSS----------------------------------------------------
T ss_pred HHHhhHHHHHHHHHHHHHHhhHhhcCCC----------------------------------------------------
Confidence 4577899999999999999999999985
Q ss_pred hCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHH
Q 023857 175 SSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKL 254 (276)
Q Consensus 175 ~S~LglnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkl 254 (276)
|||+|+|++|+|.|++++|+||++|||||+++++.+|+++|++.+|||+.++++++||++
T Consensus 32 --------------------plTEERRKeLVK~akk~aEeaKVAIRNIRRDAnd~lKKl~KdkeISEDe~kr~e~eIQKL 91 (121)
T 3lf9_A 32 --------------------GGTEERRKDLVKIVRGEAEGGRVAVRNIARDAANDLAALGKDKEVNWFDISQALWEIQKL 91 (121)
T ss_dssp --------------------BCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTTSCHHHHHHHHHHHHHH
T ss_pred --------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCHHHHHhHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcC
Q 023857 255 TDEYMKKIDSIYKQKEKELLKV 276 (276)
Q Consensus 255 td~~ik~iD~l~k~KeKEll~v 276 (276)
||+|+++||+++++||+|||.|
T Consensus 92 TDkyIkkID~ll~~KEKEI~~~ 113 (121)
T 3lf9_A 92 TDVAVKKIDEVLAAKEKELMEV 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999975
No 10
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=99.94 E-value=9.2e-28 Score=195.92 Aligned_cols=89 Identities=36% Similarity=0.431 Sum_probs=86.7
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHH
Q 023857 185 DGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 264 (276)
Q Consensus 185 Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~ 264 (276)
++++|||+|| |+|+|++|+|.|++++|+||++|||||+++++.+|+++|++.+|||+.++++++||+|||+|+++||+
T Consensus 34 ~~~~IRl~iP--TEERRkeLvK~akk~aEeaKVaIRNIRRDand~lKKl~Kd~eiSEDe~k~~e~eIQKLTDkyIkkID~ 111 (123)
T 3lhp_S 34 FKAAVRKVFP--TEERIKDWLKIVRGEAEQARVAVRNVGRDANDKAAALGKDKEINWFDISQSLWDVQKLTDAAIKKIEA 111 (123)
T ss_dssp HHHHHTTSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTTSCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEeeCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhc
Q 023857 265 IYKQKEKELLK 275 (276)
Q Consensus 265 l~k~KeKEll~ 275 (276)
++++||||||+
T Consensus 112 ll~~KEKEIm~ 122 (123)
T 3lhp_S 112 ALADMEAWLTQ 122 (123)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhc
Confidence 99999999996
No 11
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=86.11 E-value=8 Score=31.49 Aligned_cols=92 Identities=22% Similarity=0.406 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHHHHHhC--
Q 023857 99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSS-- 176 (276)
Q Consensus 99 ~~~~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~kAI~~S-- 176 (276)
++..++.+--++|+.+|+ |.|.|. | ...|.-+++..|.-..+.+.++|+..-
T Consensus 53 qvrkelakeaerl~~efn--------------i~v~y~-----------i-mgsgsgvm~i~f~gddlea~ekalkemir 106 (170)
T 4hhu_A 53 QVRKELAKEAERLKAEFN--------------INVQYQ-----------I-MGSGSGVMVIVFEGDDLEALEKALKEMIR 106 (170)
T ss_dssp HHHHHHHHHHHHHHHHHT--------------CEEEEE-----------E-ECTTCCEEEEEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc--------------eEEEEE-----------E-EeCCceEEEEEEecCcHHHHHHHHHHHHH
Confidence 566777777888888884 566652 2 133555677788888888888887532
Q ss_pred ---CC--CCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 023857 177 ---DL--GMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216 (276)
Q Consensus 177 ---~L--glnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aK 216 (276)
.+ .++-..||+.+-|.|--+.+..|++|+|.|..++.++.
T Consensus 107 qarkfagtvtytl~gn~l~i~itgvpeqvrkelakeaerl~~efn 151 (170)
T 4hhu_A 107 QARKFAGTVTYTLSGNRLVIVITGVPEQVRKELAKEAERLKAEFN 151 (170)
T ss_dssp HHHHTTCEEEEEECSSEEEEEEESCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhcceEEEEEeCCEEEEEEeCCcHHHHHHHHHHHHHHHHhcc
Confidence 22 23345799999999999999999999999988876653
No 12
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=83.64 E-value=15 Score=31.05 Aligned_cols=74 Identities=11% Similarity=0.139 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 023857 195 QLTSERRKELSKVVAKQAEEGK---VAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEK 271 (276)
Q Consensus 195 ~lT~E~R~~lvK~aKk~~E~aK---v~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~l~k~KeK 271 (276)
.||+|.++++-+.-.++..+.. ..++..|. .+..+--.....++.++.+.++|.++..+...+--++..+-.|
T Consensus 67 nLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~----EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em~K 142 (175)
T 3lay_A 67 PLTTEQQATAQKIYDDYYTQTSALRQQLISKRY----EYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQ 142 (175)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999987666555544432 23333333 3333433456778888899999998888877776665555444
Q ss_pred h
Q 023857 272 E 272 (276)
Q Consensus 272 E 272 (276)
|
T Consensus 143 e 143 (175)
T 3lay_A 143 A 143 (175)
T ss_dssp T
T ss_pred h
Confidence 3
No 13
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=83.30 E-value=5.7 Score=30.33 Aligned_cols=57 Identities=25% Similarity=0.254 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH-------HHHH------HHHHHHHHHHHhhcCCCChhhhhh-hHHHHHHHHH
Q 023857 193 LPQLTSERRKELSKVVAKQAEEGKVA-------VRNI------RRDALKAYEKLQKEKKLSEDNVKD-LSSDLQKLTD 256 (276)
Q Consensus 193 iP~lT~E~R~~lvK~aKk~~E~aKv~-------IRni------R~~~~k~ikkl~K~k~iseD~~k~-~~k~IQkltd 256 (276)
+|.++.|.|+.+++.+....++|..- +|++ |..++.+++..+. ++.+ ++.++++++|
T Consensus 24 ~~~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~-------dl~~~lk~~lk~l~d 94 (97)
T 3onj_A 24 APSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKK-------TIQSDIKRPLQSLVD 94 (97)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-------HHHHHTHHHHHHHHH
T ss_pred HhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhh
Confidence 35778899999999999999998764 4555 5555555554432 3344 5556655554
No 14
>3tuf_A Stage III sporulation protein AH; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_A
Probab=69.78 E-value=22 Score=30.86 Aligned_cols=60 Identities=5% Similarity=0.146 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHH--HHHHHHHHH
Q 023857 210 KQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMK--KIDSIYKQK 269 (276)
Q Consensus 210 k~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik--~iD~l~k~K 269 (276)
.++.++|...-..|...+..|+.+-.+..+|++....+.++|.+|++..-+ .|+.++++|
T Consensus 83 ~yFae~RL~REq~Rsk~~E~L~eII~n~n~S~eeK~eA~~ql~eLt~~~ekE~~IE~LLKAK 144 (197)
T 3tuf_A 83 DLFTTYRLDLEDARSKEREELNAIVSSDDATAKEKSEAYDKMTALSEVEGTEKQLETLIKTQ 144 (197)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 578889999999999999999999988899999999999999999986654 466666654
No 15
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=63.78 E-value=36 Score=30.56 Aligned_cols=69 Identities=7% Similarity=0.130 Sum_probs=50.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCCCChhhhhhhHHHHHHHHHHHHHHHH
Q 023857 195 QLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQ---KEKKLSEDNVKDLSSDLQKLTDEYMKKID 263 (276)
Q Consensus 195 ~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~---K~k~iseD~~k~~~k~IQkltd~~ik~iD 263 (276)
.|++|.|+-+...+.+..+......+..-.++++.++.-. .--.+++++.....+..+.+.++|.+++.
T Consensus 236 ~L~~e~q~~i~~aa~~~~~~~~~~~~~~~~~~~~~l~~~~~G~~v~~~~~~~~~~~~~a~~~v~~~~~~~~g 307 (326)
T 3fxb_A 236 GLSAEDQQLVQNAALAAYDHTVVYQQQAADTELAKIMEAKPEMQVTVLTDEQRSCFKEAAAEVEAKFIEMTG 307 (326)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCTTCEEEECCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6788999999888888777777776666666665554210 00136888889999999999999988764
No 16
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=56.94 E-value=77 Score=27.18 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHH
Q 023857 194 PQLTSERRKELSKVVAKQAEE---------GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 264 (276)
Q Consensus 194 P~lT~E~R~~lvK~aKk~~E~---------aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~ 264 (276)
..|++|--+++++.+.++.++ +|..+...-..+.+.++... ..+++++...++..++++.+-.-..=.+
T Consensus 117 ~~Ls~eeI~~m~~~a~~~~~eD~~~r~~~e~kn~le~~i~~~~~~l~~~~--~~l~~~~k~~i~~~l~~~~~~L~~~~~~ 194 (219)
T 4e81_A 117 SGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAG--DKLPADDKTAIESALTALETALKGEDKA 194 (219)
T ss_dssp CSCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG--GGSCHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred ccccHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhCCHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 358999999999999877653 22233333333333444322 3688888888887777765433222123
Q ss_pred HHHHHHhhh
Q 023857 265 IYKQKEKEL 273 (276)
Q Consensus 265 l~k~KeKEl 273 (276)
.+++|-+||
T Consensus 195 ~i~~~~~~L 203 (219)
T 4e81_A 195 AIEAKMQEL 203 (219)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444444
No 17
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=54.61 E-value=12 Score=27.35 Aligned_cols=51 Identities=27% Similarity=0.388 Sum_probs=37.1
Q ss_pred cHHHHHHHHH----hC-CC--CCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 023857 165 SLKSIEKAIV----SS-DL--GMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215 (276)
Q Consensus 165 ~ik~I~kAI~----~S-~L--glnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~a 215 (276)
.+.+.++|+. .+ .+ .++-..||+.+.|.|--+.+..|++|+|.|..++.++
T Consensus 11 dleafekalkemirqarkfagtvtytldgndleiritgvpeqvrkelakeaerlakef 68 (85)
T 2kl8_A 11 DLEAFEKALKEMIRQARKFAGTVTYTLDGNDLEIRITGVPEQVRKELAKEAERLAKEF 68 (85)
T ss_dssp SHHHHHHHHHHHHHHHTTTTCEEEEEECSSCEEEEEESCCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHhhcceEEEEecCCeeEEEEecChHHHHHHHHHHHHHHHHhc
Confidence 4555555543 23 23 2334579999999998999999999999999888765
No 18
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=53.04 E-value=21 Score=28.98 Aligned_cols=61 Identities=20% Similarity=0.335 Sum_probs=46.0
Q ss_pred EEEeecCCCcHHHHHHHHHhC-----CC--CCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 023857 156 LLIQPYDKSSLKSIEKAIVSS-----DL--GMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216 (276)
Q Consensus 156 L~I~p~D~s~ik~I~kAI~~S-----~L--glnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aK 216 (276)
+++..|.-..+.+.++|+..- .+ .++-..||+.+-|.|--+.+..|++|+|.|..++.++.
T Consensus 3 vm~i~f~gddlea~ekalkemirqarkfagtvtytl~gn~l~i~itgvpeqvrkelakeaerl~~efn 70 (170)
T 4hhu_A 3 VMVIVFEGDDLEALEKALKEMIRQARKFAGTVTYTLSGNRLVIVITGVPEQVRKELAKEAERLKAEFN 70 (170)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEEEETTEEEEEEESCCHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEEEeCCEEEEEEeCCcHHHHHHHHHHHHHHHHhcc
Confidence 345567777788888887532 22 23345799999999999999999999999988877654
No 19
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=52.48 E-value=92 Score=25.23 Aligned_cols=65 Identities=17% Similarity=0.259 Sum_probs=36.8
Q ss_pred CCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHHH
Q 023857 195 QLTSERRKEL----SKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 266 (276)
Q Consensus 195 ~lT~E~R~~l----vK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~l~ 266 (276)
.+|.++|..| .+.|+...++-+..-..-|+.++..-.+--.-.++++| +++.+..++-..|+.+-
T Consensus 10 ~mt~~Rk~~Lk~lll~kA~e~l~kE~e~k~eeKkkiLaER~~pL~id~ls~~-------~L~e~~keLh~~I~~LE 78 (133)
T 1j1d_C 10 KISASRKLQLKTLLLQIAKQELEREAEERRGEKGRALSTRAQPLELAGLGFA-------ELQDLARQLHARVDKVD 78 (133)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCTTCCHH-------HHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHH-------HHHHHHHHHHHHHHHHH
Confidence 6899999875 45566666666677777777776542211111233433 45555555555554443
No 20
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=49.99 E-value=24 Score=26.97 Aligned_cols=33 Identities=24% Similarity=0.452 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023857 194 PQLTSERRKELSKVVAKQAEEGKVAVRNIRRDA 226 (276)
Q Consensus 194 P~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~ 226 (276)
|.++.|.|+..+..+....++|..-|+...-++
T Consensus 29 ~~~~geerk~~i~~ie~~l~EA~ell~qMelE~ 61 (102)
T 1vcs_A 29 PRLPPDEKKQMVANVEKQLEEARELLEQMDLEV 61 (102)
T ss_dssp GGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445668999999999999999998887655443
No 21
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=45.30 E-value=1.5e+02 Score=25.75 Aligned_cols=68 Identities=16% Similarity=0.133 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhhhhhhHHHHHHHHHHHHHHH
Q 023857 195 QLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKE-KKLSEDNVKDLSSDLQKLTDEYMKKI 262 (276)
Q Consensus 195 ~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~-k~iseD~~k~~~k~IQkltd~~ik~i 262 (276)
.+++|.|+-+...+++..+......+..-.++++.+++..-. -.+++++.....+..+.+.++|.++.
T Consensus 219 ~L~~~~q~~i~~a~~~a~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~e~~~~~~~~~~~v~~~~~~~~ 287 (301)
T 2pfz_A 219 ALDPATQQALKKAGAQAEERGWKLSQEKNSWYKEQLAKNGMAIIAPTAELKSGLTEVGKRMLDDWLKKA 287 (301)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEecCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 678899998888888777777777666666666655432100 13567777888888888888887765
No 22
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=41.81 E-value=1.4e+02 Score=25.44 Aligned_cols=65 Identities=17% Similarity=0.250 Sum_probs=37.6
Q ss_pred CCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHHH
Q 023857 195 QLTSERRKELS----KVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 266 (276)
Q Consensus 195 ~lT~E~R~~lv----K~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~l~ 266 (276)
.||.+||..|- +.|....++-+.....-|+.++..-. +-+.-| .--+.+|+.+..++-..|+.+-
T Consensus 10 ~mt~~Rk~~Lk~lll~kA~e~L~~E~e~k~eEKkkiLaER~-----kPLnid--~Lse~~L~e~ckELh~~I~~LE 78 (180)
T 1j1e_C 10 KISASRKLQLKTLLLQIAKQELEREAEERRGEKGRALSTRA-----QPLELA--GLGFAELQDLARQLHARVDKVD 78 (180)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CCCCGG--GCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCCC--CCCHHHHHHHHHHHHHHHHHHH
Confidence 68999998754 45566666666677777777765321 222222 2234455666555555555443
No 23
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=41.58 E-value=1.3e+02 Score=27.09 Aligned_cols=68 Identities=6% Similarity=0.146 Sum_probs=49.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCChhhhhhhHHHHHHHHHHHHHH
Q 023857 194 PQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQK-EKKLSEDNVKDLSSDLQKLTDEYMKK 261 (276)
Q Consensus 194 P~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K-~k~iseD~~k~~~k~IQkltd~~ik~ 261 (276)
=.|++|.|+-+...+++..+......+..-.++++.+++..- --.+++++.....+..+.+.+.+.++
T Consensus 238 ~~L~~e~q~~i~~a~~e~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~e~~~~~~~~~~~v~~~~~~~ 306 (328)
T 3u65_B 238 ARIPSRYHDAMLQAATRVRQRLANNLETLDRECSNNIQKAGVSIVHLTPQEIQEWRTEFAADVKRIQAR 306 (328)
T ss_dssp TTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999988888887777777777666543210 01567788888888888777754444
No 24
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=39.24 E-value=16 Score=23.03 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=17.1
Q ss_pred EeCCCCCHHHHHHHHHHHHH
Q 023857 191 LTLPQLTSERRKELSKVVAK 210 (276)
Q Consensus 191 V~iP~lT~E~R~~lvK~aKk 210 (276)
+.+|-+|+|.|..-++.+|.
T Consensus 13 Lh~~nLtEeQrn~yI~slkd 32 (34)
T 1l6x_B 13 LHDPNLNEEQRNAKIKSIRD 32 (34)
T ss_dssp HHCTTCCHHHHHHHHHHHHH
T ss_pred HcCCCCCHHHHHhHHHHHhc
Confidence 35799999999999988775
No 25
>2fqm_A Phosphoprotein, P protein; negative strand RNA virus, polymerase, replication, cofactor, viral protein; 2.30A {Vesicular stomatitis indiana virus} SCOP: d.378.1.1
Probab=37.70 E-value=50 Score=24.08 Aligned_cols=32 Identities=28% Similarity=0.528 Sum_probs=28.0
Q ss_pred CCCeEEEeCC-CCCHHHHHHHHHHHHHHHHHHH
Q 023857 185 DGEVIRLTLP-QLTSERRKELSKVVAKQAEEGK 216 (276)
Q Consensus 185 Dg~~I~V~iP-~lT~E~R~~lvK~aKk~~E~aK 216 (276)
.|.++++.+| -+|.|.+.+-.+-++..+|-+|
T Consensus 16 ~~KsL~Lf~P~gLt~~Q~~QW~~TIeav~qSak 48 (75)
T 2fqm_A 16 HGKTLRLTLPEGLSGEQKSQWMLTIKAVVQSAK 48 (75)
T ss_dssp TEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEeCCCCccHHHHHHHHHHHHHHHhhhc
Confidence 4568998887 4999999999999999999886
No 26
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=36.91 E-value=62 Score=21.68 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=21.9
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 023857 188 VIRLTLPQLTSERRKELSKVVAKQAEE 214 (276)
Q Consensus 188 ~I~V~iP~lT~E~R~~lvK~aKk~~E~ 214 (276)
.|.|.++..|.|.+++|++.+-....+
T Consensus 2 ~I~I~~~grt~eqK~~L~~~it~~~~~ 28 (62)
T 3m20_A 2 VLIVYGPKLDVGKKREFVERLTSVAAE 28 (62)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 467777899999999999988766654
No 27
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=36.34 E-value=1.3e+02 Score=29.42 Aligned_cols=61 Identities=18% Similarity=0.244 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHH
Q 023857 194 PQLTSERRKELSKVVAKQAEEGKV---------AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTD 256 (276)
Q Consensus 194 P~lT~E~R~~lvK~aKk~~E~aKv---------~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd 256 (276)
..+++|..+++++.+.++.++=+. .+-+.=.++.+.++.+ ...+++++...+++.++++.+
T Consensus 505 ~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~l~~~--~~~~~~~~~~~i~~~~~~~~~ 574 (605)
T 2kho_A 505 SGLNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVEEA--GDKLPADDKTAIESALTALET 574 (605)
T ss_dssp SSCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--GGGSCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hccCCHHHHHHHHHHHHHHHH
Confidence 579999999999999877654221 1111222222333332 135888888888888777654
No 28
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=36.06 E-value=1.8e+02 Score=25.26 Aligned_cols=68 Identities=19% Similarity=0.209 Sum_probs=45.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhhhhhhHHHHHHHHHHHHHHH
Q 023857 195 QLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKE-KKLSEDNVKDLSSDLQKLTDEYMKKI 262 (276)
Q Consensus 195 ~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~-k~iseD~~k~~~k~IQkltd~~ik~i 262 (276)
.+++|.|+-+...+++..+......+..-.++++.+++..-. -.+++++.....+..+.+.++|.++.
T Consensus 220 ~L~~~~q~~i~~a~~~a~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~e~~~~~~~~~~~v~~~~~~~~ 288 (301)
T 2pfy_A 220 RLPAEVRQAVLDAGAKAEIRGWQTARAKTRELTDTLARNGMSVEPLPPQLAKELQAIGATMVSDWSKKA 288 (301)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEecCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 567788888888777777666666666555565555432100 13466677778888888888887655
No 29
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=35.76 E-value=1.9e+02 Score=24.61 Aligned_cols=61 Identities=18% Similarity=0.113 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHH
Q 023857 194 PQLTSERRKELSKVVAKQAEEG---------KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTD 256 (276)
Q Consensus 194 P~lT~E~R~~lvK~aKk~~E~a---------Kv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd 256 (276)
..||.|.-+++++.+.++.++= |..+-+.=.++.+.+.... ..+++++...++..++.+-+
T Consensus 114 ~~Ls~eei~~~~~~~~~~~~~D~~~~e~~e~kn~le~~i~~~~~~l~~~~--~~~~~~~k~~i~~~l~~~~~ 183 (227)
T 1u00_A 114 YGLTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADA--ALLSAAERQVIDDAAAHLSE 183 (227)
T ss_dssp SCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG--GGSCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhh--ccCCHHHHHHHHHHHHHHHH
Confidence 4689999999999988776542 2222222222333333321 35778887777777766653
No 30
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=34.97 E-value=1.5e+02 Score=28.97 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHH
Q 023857 194 PQLTSERRKELSKVVAKQAEEG---------KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDE 257 (276)
Q Consensus 194 P~lT~E~R~~lvK~aKk~~E~a---------Kv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~ 257 (276)
..|++|.-+++++.+.++.++= |..+...-.++.+.++.. ...+++++...++..++++.+-
T Consensus 505 ~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 575 (605)
T 4b9q_A 505 SGLNEDEIQKMVRDAEANAEADRKCEELVQTRNQGDHLLHSTRKQVEEA--GDKLPADDKTAIESALTALETA 575 (605)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--GGGSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhCCHHHHHHHHHHHHHHHHH
Confidence 5699999999999998877552 222333333333333332 1368888888888877776543
No 31
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=31.79 E-value=1.3e+02 Score=22.83 Aligned_cols=33 Identities=12% Similarity=0.246 Sum_probs=25.5
Q ss_pred CCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023857 194 PQL-TSERRKELSKVVAKQAEEGKVAVRNIRRDA 226 (276)
Q Consensus 194 P~l-T~E~R~~lvK~aKk~~E~aKv~IRniR~~~ 226 (276)
|.. ..|.|+..+..+....++|..-|+...-++
T Consensus 39 ~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~ 72 (102)
T 2qyw_A 39 LGTAGTEEKKKLVRDFDEKQQEANETLAEMEEEL 72 (102)
T ss_dssp HTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 348999999999999999998877655444
No 32
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=31.54 E-value=2.4e+02 Score=23.92 Aligned_cols=33 Identities=27% Similarity=0.324 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023857 199 ERRKELSKVVAKQAEEGKVAVRNIRRDALKAYE 231 (276)
Q Consensus 199 E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ik 231 (276)
|..+++-+.+..+-++|+..-+.|+.++...+.
T Consensus 12 ~v~~~i~~m~~fI~qEA~eKA~EI~~kAeeE~~ 44 (233)
T 4efa_E 12 QVNDELNKMQAFIRKEAEEKAKEIQLKADQEYE 44 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777788888888888877766543
No 33
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=29.81 E-value=50 Score=27.80 Aligned_cols=64 Identities=9% Similarity=0.134 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHH
Q 023857 196 LTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 263 (276)
Q Consensus 196 lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD 263 (276)
+++|.|.++... ...++.=..||..|++++.++.-+. +-+.-..+.++.+-|+++++.+....+
T Consensus 4 ~~k~~~~~~~~l--~~~~~~~~~LR~qrHdf~NkLqvI~--GLlql~~ydea~~yI~~~~~~~q~~~~ 67 (192)
T 1ixm_A 4 VSKNQEENISDT--ALTNELIHLLGHSRHDWMNKLQLIK--GNLSLQKYDRVFEMIEEMVIDAKHESK 67 (192)
T ss_dssp ---------CCH--HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 455666655333 3334555689999999999987664 344455666777888888888776653
No 34
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=29.61 E-value=1.7e+02 Score=25.72 Aligned_cols=66 Identities=6% Similarity=0.304 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCChhhhhhhHHHHHHHHHHHHHH
Q 023857 195 QLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEK----KLSEDNVKDLSSDLQKLTDEYMKK 261 (276)
Q Consensus 195 ~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k----~iseD~~k~~~k~IQkltd~~ik~ 261 (276)
.+++|.|+-+...+++..+......+..-.++++.++. ++.+ .+++++.....+..+.+.++|.++
T Consensus 222 ~L~~~~q~~l~~a~~~a~~~~~~~~~~~~~~~~~~l~~-~~~Gv~v~~~~~~~~~~~~~~~~~v~~~~~~~ 291 (316)
T 2vpn_A 222 GLSEEDQQLVQDAADAAYDHTIEHIKGLSEESLEKIKA-ASDEVTVTRLNDEQIQAFKERAPQVEEKFIEM 291 (316)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH-HCTTCEEEECCHHHHHHHHTTHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCEEEeCCHHHHHHHHHHHHHHHHHHHHh
Confidence 56778888888877777666666666555555555410 2222 356778888888888888888764
No 35
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=28.53 E-value=3.2e+02 Score=24.37 Aligned_cols=63 Identities=11% Similarity=0.012 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCChhhhhhhHHHHHHHHHHHHHH
Q 023857 196 LTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEK----KLSEDNVKDLSSDLQKLTDEYMKK 261 (276)
Q Consensus 196 lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k----~iseD~~k~~~k~IQkltd~~ik~ 261 (276)
+++|.|+-+...+.+..+......+..-.++++.++ +.+ .+++|+.....+..+.+.++|.++
T Consensus 257 L~~~~q~~l~~a~~~a~~~~~~~~~~~~~~~~~~l~---~~G~~v~~~~~~~~~~~~~~~~~v~~~~~~~ 323 (365)
T 2hzl_A 257 LTPTYQSLLRTACHAADANMLQLYDWKNPTAIKSLV---AQGTQLRPFSPEILQACFEAANEVYAEMEAS 323 (365)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTCEEEECCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH---HCCCEEEeCCHHHHHHHHHHHHHHHHHHHcc
Confidence 788999888888887777776666655555555543 333 246677778888888888887653
No 36
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=28.28 E-value=1e+02 Score=23.88 Aligned_cols=57 Identities=18% Similarity=0.138 Sum_probs=45.5
Q ss_pred EEEEeecC-CCcHHHHHHHHHhCCCCCCcc---CCCCeEEEeCCCCCHHHHHHHHHHHHHHH
Q 023857 155 SLLIQPYD-KSSLKSIEKAIVSSDLGMTPN---NDGEVIRLTLPQLTSERRKELSKVVAKQA 212 (276)
Q Consensus 155 tL~I~p~D-~s~ik~I~kAI~~S~LglnPq---~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~ 212 (276)
.|.|..+| +..+..|...|...+.|+.-. .+|. +.+.+|....+.-..+....+.+.
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g~-i~~~~~~~~~~~~~~L~~~l~~i~ 62 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGR-IYLNFAELEFESFSSLMAEIRRIA 62 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTTE-EEEEECCCCHHHHHHHHHHHHHST
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCCE-EEEEEEeCCHHHHHHHHHHHHcCC
Confidence 47788999 889999999999998766532 4454 999999988888888887777654
No 37
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=27.71 E-value=76 Score=21.89 Aligned_cols=47 Identities=26% Similarity=0.298 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhcCCCChhhhhhh
Q 023857 194 PQLTSERRKELSKVVAKQAEEGKVA--VRNIRRDALKAYEKLQKEKKLSEDNVKDL 247 (276)
Q Consensus 194 P~lT~E~R~~lvK~aKk~~E~aKv~--IRniR~~~~k~ikkl~K~k~iseD~~k~~ 247 (276)
|.=+...|++++..|..+..+-++. =..-|..++ +.|+++++++..+
T Consensus 2 ~~~~~~~Re~li~~Av~FL~dp~V~~sp~~~K~~FL-------~sKGLt~~EI~~A 50 (54)
T 3ff5_A 2 PLGSPEFREPLIATAVKFLQNSRVRQSPLATRRAFL-------KKKGLTDEEIDLA 50 (54)
T ss_dssp TTCCHHHHHHHHHHHHHHHHCTTGGGSCHHHHHHHH-------HHTTCCHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHhCChhhhcCCHHHHHHHH-------HHcCCCHHHHHHH
Confidence 5557789999999999999886542 222333333 3579998875543
No 38
>1usp_A Organic hydroperoxide resistance protein; oxidoreductase, 2-Cys peroxidase; 1.9A {Deinococcus radiodurans} SCOP: d.227.1.1 PDB: 1usp_B
Probab=26.33 E-value=56 Score=25.49 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=22.2
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHHHH
Q 023857 188 VIRLTLPQLTSERRKELSKVVAKQAE 213 (276)
Q Consensus 188 ~I~V~iP~lT~E~R~~lvK~aKk~~E 213 (276)
.+.|.+|-+++|.+++++..|.+.|=
T Consensus 97 ~~~v~~~~~~~e~~~~l~~~a~~~Cp 122 (139)
T 1usp_A 97 ELEGHFPGLSREQAEGLMHAAHEVCP 122 (139)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHCH
T ss_pred EEEEEECCCCHHHHHHHHHHHHhhCc
Confidence 57788888999999999998887664
No 39
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=26.05 E-value=3.6e+02 Score=26.81 Aligned_cols=68 Identities=18% Similarity=0.204 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023857 200 RRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKE 272 (276)
Q Consensus 200 ~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~l~k~KeKE 272 (276)
.|++++|.+ -++..-.+.++|.+..+.+..--++ .-....+.++..++..++.--.+++.+++.|++.
T Consensus 589 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 656 (695)
T 2j69_A 589 ARRELVKTA---KKELVKHLPQVAHEQSQVVYNAVKE--CFDSYEREVSKRINDDIVSRKSELDNLVKQKQTR 656 (695)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 688888887 4455566777777766433322111 1222334677788888888888888888888764
No 40
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=25.22 E-value=2.1e+02 Score=21.79 Aligned_cols=44 Identities=27% Similarity=0.366 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHH
Q 023857 210 KQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDE 257 (276)
Q Consensus 210 k~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~ 257 (276)
..||+++.. |=+++-+++.+++ +..|+|..++.+.++|-+|..+
T Consensus 24 ~~AekWR~q---vikEIs~Kv~~Iq-n~~L~E~~IRdLNDEINkL~rE 67 (92)
T 1x4t_A 24 PKAEKWRRQ---IIGEISKKVAQIQ-NAGLGEFRIRDLNDEINKLLRE 67 (92)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHH-HCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHhh-CCCCCHHHHHHHHHHHHHHHHH
Confidence 356677643 2234444555665 4689999999999988877654
No 41
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=24.29 E-value=3.6e+02 Score=24.01 Aligned_cols=63 Identities=13% Similarity=0.163 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCChhhhhhhHHHHHHHHHHHHH
Q 023857 195 QLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEK----KLSEDNVKDLSSDLQKLTDEYMK 260 (276)
Q Consensus 195 ~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k----~iseD~~k~~~k~IQkltd~~ik 260 (276)
.+++|.|+-+...+.+..+......+..-.++++.++ +.+ .+++++.....+..+.+.++|.+
T Consensus 263 ~L~~~~q~~i~~a~~~a~~~~~~~~~~~~~~~~~~l~---~~G~~v~~~~~~~~~~~~~~~~~v~~~~~~ 329 (361)
T 2zzv_A 263 SLPKPLQERFIAAVHEYSWIHYAGIQKANLEAWPKYR---QAGVEVIRLSNEDVRKFRRLAIPIWFKWAK 329 (361)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTCEEEECCHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HCCCEEEECCHHHHHHHHHHHHHHHHHHHh
Confidence 3778888888877777777666666655455555443 333 35667888888888888887743
No 42
>2bjo_A Organic hydroperoxide resistance protein OHRB; heat shock protein, oxidor; 2.10A {Bacillus subtilis}
Probab=24.18 E-value=64 Score=25.04 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=21.9
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHHHH
Q 023857 188 VIRLTLPQLTSERRKELSKVVAKQAE 213 (276)
Q Consensus 188 ~I~V~iP~lT~E~R~~lvK~aKk~~E 213 (276)
.+.|.+|.+++|..++++..+.+.|=
T Consensus 95 ~~~v~~~~~~~e~~~~l~~~a~~~Cp 120 (136)
T 2bjo_A 95 TLVVNTKDLDREKAQELVNAAHEFCP 120 (136)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHCH
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHhCc
Confidence 46788899999999999999987664
No 43
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=24.17 E-value=3.5e+02 Score=23.44 Aligned_cols=66 Identities=15% Similarity=0.220 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CC--ChhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023857 204 LSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEK---KL--SEDNVKDLSSDLQKLTDEYMKKIDSIYKQK 269 (276)
Q Consensus 204 lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k---~i--seD~~k~~~k~IQkltd~~ik~iD~l~k~K 269 (276)
+......+++.-..--.+++.+..+.++.+.++. .+ .--+.+.++..++++++.+.+....+.++|
T Consensus 93 i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~k~~~~~~ke~k~~~~~~~k~~k~~~~~~~~l~KaK 163 (312)
T 3abh_A 93 FMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAK 163 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCTTSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444433444445555555555554321 00 001124455555555555544444444443
No 44
>1qwi_A OSMC, osmotically inducible protein; hydroperoxide resistance, hydroperoxide reductase; 1.80A {Escherichia coli} SCOP: d.227.1.1
Probab=23.81 E-value=68 Score=25.21 Aligned_cols=26 Identities=4% Similarity=0.095 Sum_probs=21.9
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHHHH
Q 023857 188 VIRLTLPQLTSERRKELSKVVAKQAE 213 (276)
Q Consensus 188 ~I~V~iP~lT~E~R~~lvK~aKk~~E 213 (276)
.+.|.+|.+++|.++++++.|.+.|=
T Consensus 101 ~~~v~~~~~~~e~~~~l~~~a~~~Cp 126 (143)
T 1qwi_A 101 KSEVAVPGIDASTFDGIIQKAKAGCP 126 (143)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHSH
T ss_pred EEEEEeCCCCHHHHHHHHHHHHccCc
Confidence 46788899999999999998887664
No 45
>1n2f_A Organic hydroperoxide resistance protein; peroxide reductase, oxidoreductase; 2.01A {Pseudomonas aeruginosa} SCOP: d.227.1.1
Probab=23.38 E-value=67 Score=25.22 Aligned_cols=26 Identities=15% Similarity=0.303 Sum_probs=22.2
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHHHH
Q 023857 188 VIRLTLPQLTSERRKELSKVVAKQAE 213 (276)
Q Consensus 188 ~I~V~iP~lT~E~R~~lvK~aKk~~E 213 (276)
.+.|.+|.+++|.+++++..|.+.|=
T Consensus 100 ~~~v~~~~~~~e~~~~l~~~a~~~Cp 125 (142)
T 1n2f_A 100 ELHINLPGMEREAAEALVAAAHQVCP 125 (142)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHCH
T ss_pred EEEEEECCCCHHHHHHHHHHHHHhCc
Confidence 57888899999999999998887664
No 46
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=23.01 E-value=1.3e+02 Score=22.23 Aligned_cols=16 Identities=13% Similarity=0.312 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 023857 248 SSDLQKLTDEYMKKID 263 (276)
Q Consensus 248 ~k~IQkltd~~ik~iD 263 (276)
+.+++++.+-..+.||
T Consensus 11 q~ev~evk~iM~~NI~ 26 (91)
T 3hd7_A 11 QAQVDEVVDIMRVNVD 26 (91)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 47
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=22.83 E-value=3.8e+02 Score=26.65 Aligned_cols=62 Identities=15% Similarity=0.087 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHH
Q 023857 194 PQLTSERRKELSKVVAKQAEEGKV---------AVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTD 256 (276)
Q Consensus 194 P~lT~E~R~~lvK~aKk~~E~aKv---------~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd 256 (276)
+.||+|..+++++.+.++.++=+. .+-..=-++.+.+... -...+++++...++..++++-+
T Consensus 522 ~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~~~n~le~~i~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~~~ 592 (675)
T 3d2f_A 522 FGLDAKKLNELIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEE-YAPFASDAEKTKLQGMLNKAEE 592 (675)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-TGGGSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhCCHHHHHHHHHHHHHHHH
Confidence 589999999999999887764221 1111111222222210 1135788888888888777654
No 48
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=22.42 E-value=2.4e+02 Score=24.85 Aligned_cols=67 Identities=13% Similarity=0.254 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChhhhhhhHHHHHHHHHHHHHHHH
Q 023857 194 PQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEK-KLSEDNVKDLSSDLQKLTDEYMKKID 263 (276)
Q Consensus 194 P~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k-~iseD~~k~~~k~IQkltd~~ik~iD 263 (276)
-.+++|.|+-+...+.+..+..+...+..-.++++.++ +.+ .+.+-+.....+..+.+.++|.++..
T Consensus 224 ~~L~~~~q~~i~~a~~~a~~~~~~~~~~~~~~~~~~l~---~~G~~v~~~~~~~~~~a~~~v~~~~~~~~~ 291 (312)
T 2xwv_A 224 KELPEDLQKVVKDAAENAAKYHTKLFVDGEKDLVTFFE---KQGVKITHPDLVPFKESMKPYYAEFVKQTG 291 (312)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTCEEECCCSHHHHHHTHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCEEeccCHHHHHHHHHHHHHHHHHhcc
Confidence 57888999988887777766666666555455554443 222 23333445566677778888876654
No 49
>2ql8_A Putative redox protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 1.50A {Lactobacillus casei}
Probab=22.34 E-value=59 Score=25.62 Aligned_cols=26 Identities=4% Similarity=0.156 Sum_probs=21.8
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHHHH
Q 023857 188 VIRLTLPQLTSERRKELSKVVAKQAE 213 (276)
Q Consensus 188 ~I~V~iP~lT~E~R~~lvK~aKk~~E 213 (276)
.+.|.+|.+++|.+++++..|.+.|=
T Consensus 97 ~~~v~~~g~~~e~~~~l~~~a~~~Cp 122 (143)
T 2ql8_A 97 HAQVMVKGVDFDTAKAFTNEIENRCP 122 (143)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHCH
T ss_pred EEEEEECCCCHHHHHHHHHHHHhcCc
Confidence 47788888999999999998877664
No 50
>3t98_A Nuclear pore complex protein NUP54; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus}
Probab=22.15 E-value=1.7e+02 Score=19.80 Aligned_cols=38 Identities=8% Similarity=0.213 Sum_probs=30.2
Q ss_pred cccchhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 023857 82 RCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVR 119 (276)
Q Consensus 82 ~~~~~ee~~~~~~~i~~~~~~kM~k~ve~lk~~l~kiR 119 (276)
+...+++..+++...+..-.+.|...++.+++++..+.
T Consensus 12 ~y~lD~~~~~eik~~L~~QQ~g~~~Li~ivk~DleDL~ 49 (51)
T 3t98_A 12 KYYIDADLLREIKQHLKQQQEGLSHLISIIKDDLEDIK 49 (51)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Confidence 35566777777777788899999999999999998663
No 51
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=21.94 E-value=2.4e+02 Score=20.74 Aligned_cols=22 Identities=9% Similarity=0.306 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023857 203 ELSKVVAKQAEEGKVAVRNIRR 224 (276)
Q Consensus 203 ~lvK~aKk~~E~aKv~IRniR~ 224 (276)
.|-...++..+.+...|-.+|+
T Consensus 11 KLRrrl~E~~~q~qaEl~sLrr 32 (78)
T 3iv1_A 11 KLRWRMKEEMDRAQAELNALKR 32 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHH
Confidence 4455566666666655544444
No 52
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=21.16 E-value=3.8e+02 Score=22.72 Aligned_cols=67 Identities=22% Similarity=0.306 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023857 195 QLTSERRKELSK----VVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQK 269 (276)
Q Consensus 195 ~lT~E~R~~lvK----~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~l~k~K 269 (276)
.||.++|..|-. .|....++-....+.-|+.++..- -+-+.-|. -+.+||.+..++-..|+.+-.+|
T Consensus 8 kmt~~Rk~~Lk~lll~kA~e~L~~E~e~k~eeKkkiLaER-----~kPLnid~---se~~L~e~ckELh~~I~~LEeEK 78 (182)
T 1ytz_I 8 RAATARRQHLKSAMLQLAVTEIEKEAAAKEVEKQNYLAEH-----SPPLSLPG---SMQELQELSKKLHAKIDSVDEER 78 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----SCCCCCCC---SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCCCCCC---CHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888887544 455555555556666677666431 12232222 45567777777777777665443
No 53
>1zb9_A OHR, organic hydroperoxide resistance protein; oxidoreductase; HET: PE4; 1.80A {Xylella fastidiosa} PDB: 1zb8_A*
Probab=20.73 E-value=83 Score=24.73 Aligned_cols=26 Identities=8% Similarity=0.165 Sum_probs=22.2
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHHHH
Q 023857 188 VIRLTLPQLTSERRKELSKVVAKQAE 213 (276)
Q Consensus 188 ~I~V~iP~lT~E~R~~lvK~aKk~~E 213 (276)
.+.|.+|.+++|..++++..|.+.|=
T Consensus 101 ~~~v~~~~~~~e~~~~l~~~a~~~Cp 126 (143)
T 1zb9_A 101 ELRIAVSGMERSMLQTLVDKAHRVCP 126 (143)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHCH
T ss_pred EEEEEECCCCHHHHHHHHHHHHhhCc
Confidence 57788899999999999998887664
No 54
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=20.71 E-value=2.7e+02 Score=20.81 Aligned_cols=37 Identities=5% Similarity=0.195 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHH
Q 023857 210 KQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQK 253 (276)
Q Consensus 210 k~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQk 253 (276)
=+..+-+..|+++|..+.+.|.... +++..++++|+.
T Consensus 33 YfrqkekEqL~~LKkkl~~el~~h~-------~ei~~le~~i~r 69 (84)
T 1gmj_A 33 YFRARAKEQLAALKKHKENEISHHA-------KEIERLQKEIER 69 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 3445567778888877766655432 345555555543
No 55
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=20.23 E-value=23 Score=22.88 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=16.1
Q ss_pred EeCCCCCHHHHHHHHHHHH
Q 023857 191 LTLPQLTSERRKELSKVVA 209 (276)
Q Consensus 191 V~iP~lT~E~R~~lvK~aK 209 (276)
+.+|-+|+|.|...++.+|
T Consensus 18 Lh~~nLtEeQrn~yI~slk 36 (38)
T 1zda_A 18 LHDPNLNEEQRNAKIKSIR 36 (38)
T ss_dssp HSCSSSCTTHHHHHHHHHS
T ss_pred HcCCCCCHHHHHhHHHHhh
Confidence 5689999999999888765
Done!