Query 023862
Match_columns 276
No_of_seqs 73 out of 75
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 14:03:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023862.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023862hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2heo_A Z-DNA binding protein 1 96.0 0.019 6.5E-07 41.2 6.5 51 83-135 11-61 (67)
2 2jt1_A PEFI protein; solution 95.8 0.016 5.4E-07 43.7 5.7 49 82-132 4-57 (77)
3 3i71_A Ethanolamine utilizatio 95.8 0.015 5.2E-07 43.5 5.2 45 85-131 6-50 (68)
4 3f2g_A Alkylmercury lyase; MER 95.7 0.011 3.7E-07 52.9 5.2 56 80-142 20-75 (220)
5 2lnb_A Z-DNA-binding protein 1 94.8 0.046 1.6E-06 42.5 5.5 44 82-125 19-62 (80)
6 1xmk_A Double-stranded RNA-spe 94.0 0.14 4.7E-06 38.9 6.4 58 81-141 10-68 (79)
7 3r0a_A Putative transcriptiona 93.8 0.48 1.6E-05 37.0 9.6 85 82-170 26-116 (123)
8 1q1h_A TFE, transcription fact 93.6 0.22 7.5E-06 37.4 6.9 57 82-140 18-79 (110)
9 1qbj_A Protein (double-strande 92.8 0.12 4.1E-06 39.0 4.4 50 80-131 8-59 (81)
10 3cuq_B Vacuolar protein-sortin 92.6 0.35 1.2E-05 42.5 7.7 69 74-145 145-214 (218)
11 2fu4_A Ferric uptake regulatio 92.4 0.3 1E-05 35.0 5.9 60 81-140 16-81 (83)
12 2htj_A P fimbrial regulatory p 92.3 0.21 7.2E-06 36.1 5.0 45 84-131 2-46 (81)
13 1qgp_A Protein (double strande 92.1 0.18 6E-06 37.3 4.5 46 80-125 12-59 (77)
14 3cuq_A Vacuolar-sorting protei 90.7 0.45 1.5E-05 42.8 6.4 70 73-146 144-217 (234)
15 1u5t_A Appears to BE functiona 90.5 0.26 8.9E-06 44.3 4.7 60 84-146 169-230 (233)
16 3cuo_A Uncharacterized HTH-typ 90.5 0.62 2.1E-05 33.4 5.9 59 80-141 22-81 (99)
17 1y0u_A Arsenical resistance op 90.2 0.57 2E-05 34.5 5.7 54 80-141 29-82 (96)
18 1oyi_A Double-stranded RNA-bin 90.2 0.36 1.2E-05 37.1 4.6 42 81-124 16-57 (82)
19 2oqg_A Possible transcriptiona 90.0 3.3 0.00011 30.5 9.8 57 79-139 18-74 (114)
20 2xvc_A ESCRT-III, SSO0910; cel 89.9 0.57 2E-05 34.6 5.2 46 80-125 8-53 (59)
21 3jth_A Transcription activator 89.4 0.59 2E-05 34.2 5.1 57 80-140 21-77 (98)
22 1r1u_A CZRA, repressor protein 89.0 1 3.6E-05 33.7 6.4 59 79-141 23-81 (106)
23 3f6o_A Probable transcriptiona 88.9 2.7 9.2E-05 32.1 8.8 59 79-141 15-73 (118)
24 2k02_A Ferrous iron transport 88.7 0.65 2.2E-05 35.8 5.1 42 83-125 3-44 (87)
25 1xn7_A Hypothetical protein YH 88.6 0.7 2.4E-05 34.6 5.1 42 83-125 3-44 (78)
26 2kko_A Possible transcriptiona 88.4 0.88 3E-05 34.5 5.6 57 81-141 24-80 (108)
27 3f6v_A Possible transcriptiona 88.3 1.3 4.4E-05 36.2 7.0 59 79-141 55-113 (151)
28 2l0k_A Stage III sporulation p 85.6 0.73 2.5E-05 35.7 3.8 38 80-119 5-42 (93)
29 2jsc_A Transcriptional regulat 85.4 2.2 7.4E-05 32.8 6.4 58 80-141 19-76 (118)
30 1r1t_A Transcriptional repress 84.5 3.5 0.00012 32.1 7.3 57 81-141 45-101 (122)
31 3h5t_A Transcriptional regulat 84.4 2 7E-05 37.4 6.5 75 92-166 4-100 (366)
32 1sfx_A Conserved hypothetical 84.3 9 0.00031 27.1 9.3 58 81-141 19-78 (109)
33 1ub9_A Hypothetical protein PH 84.2 7.3 0.00025 27.6 8.4 59 80-141 14-75 (100)
34 2v9v_A Selenocysteine-specific 83.8 7.9 0.00027 29.7 9.1 62 84-147 4-65 (135)
35 3b73_A PHIH1 repressor-like pr 83.3 2.7 9.1E-05 33.3 6.2 63 82-149 13-77 (111)
36 3pqk_A Biofilm growth-associat 82.7 1.7 5.7E-05 32.1 4.6 59 79-141 20-79 (102)
37 2zkz_A Transcriptional repress 82.5 3 0.0001 31.1 5.9 59 79-141 24-82 (99)
38 2x4h_A Hypothetical protein SS 82.4 12 0.0004 28.5 9.4 47 85-133 16-65 (139)
39 2lkp_A Transcriptional regulat 82.2 6.3 0.00022 29.5 7.8 58 82-143 32-89 (119)
40 2dk8_A DNA-directed RNA polyme 81.5 5.7 0.00019 30.5 7.2 60 80-141 12-73 (81)
41 2d1h_A ST1889, 109AA long hypo 81.4 3.2 0.00011 29.7 5.6 47 84-132 23-69 (109)
42 2p5k_A Arginine repressor; DNA 81.4 6.3 0.00022 26.3 6.8 53 83-140 5-63 (64)
43 2o03_A Probable zinc uptake re 81.4 5.7 0.0002 31.1 7.5 61 81-141 10-75 (131)
44 3vp5_A Transcriptional regulat 81.3 1.1 3.9E-05 35.2 3.4 36 77-112 7-47 (189)
45 2cyy_A Putative HTH-type trans 81.1 2.5 8.4E-05 33.4 5.3 43 82-125 7-49 (151)
46 1p6r_A Penicillinase repressor 80.4 4.6 0.00016 28.7 6.1 56 82-140 9-68 (82)
47 1sfu_A 34L protein; protein/Z- 80.2 3.5 0.00012 31.4 5.6 52 80-133 10-63 (75)
48 1u5t_B Defective in vacuolar p 79.9 2.7 9.1E-05 35.6 5.4 61 77-140 93-162 (169)
49 2dbb_A Putative HTH-type trans 79.5 3.2 0.00011 32.6 5.4 43 82-125 9-51 (151)
50 2w25_A Probable transcriptiona 79.4 3 0.0001 32.8 5.3 43 82-125 7-49 (150)
51 2pn6_A ST1022, 150AA long hypo 78.9 2.3 8E-05 33.2 4.5 43 82-125 3-45 (150)
52 1u2w_A CADC repressor, cadmium 78.9 3.2 0.00011 32.0 5.2 56 81-139 41-96 (122)
53 2e1c_A Putative HTH-type trans 78.5 3.1 0.00011 34.2 5.3 43 82-125 27-69 (171)
54 2cfx_A HTH-type transcriptiona 77.9 3.6 0.00012 32.3 5.3 43 82-125 5-47 (144)
55 2cg4_A Regulatory protein ASNC 77.6 3.6 0.00012 32.4 5.2 43 82-125 8-50 (152)
56 1i1g_A Transcriptional regulat 77.2 3.6 0.00012 31.6 5.0 42 83-125 5-46 (141)
57 1ku9_A Hypothetical protein MJ 76.0 21 0.00073 26.4 10.2 60 83-144 27-89 (152)
58 3kkc_A TETR family transcripti 75.9 2 6.8E-05 32.6 3.2 31 82-112 12-47 (177)
59 4hku_A LMO2814 protein, TETR t 75.8 1.4 4.8E-05 34.4 2.4 30 82-111 7-41 (178)
60 2p5v_A Transcriptional regulat 75.6 4.5 0.00015 32.3 5.3 43 82-125 10-52 (162)
61 2fe3_A Peroxide operon regulat 75.4 8.1 0.00028 30.8 6.8 62 80-141 20-86 (145)
62 2ia0_A Putative HTH-type trans 75.4 4.3 0.00015 33.3 5.3 43 82-125 17-59 (171)
63 1mkm_A ICLR transcriptional re 75.0 17 0.0006 31.0 9.3 53 85-141 11-63 (249)
64 3bdd_A Regulatory protein MARR 75.0 15 0.0005 27.3 7.8 47 83-132 32-78 (142)
65 3k2z_A LEXA repressor; winged 74.9 3.4 0.00012 34.3 4.6 45 85-131 12-56 (196)
66 2qwt_A Transcriptional regulat 74.9 2 6.9E-05 33.8 3.0 32 83-114 14-49 (196)
67 4a0z_A Transcription factor FA 74.7 3.6 0.00012 35.1 4.8 40 83-123 13-52 (190)
68 2nnn_A Probable transcriptiona 74.4 23 0.0008 26.1 9.7 46 83-131 39-84 (140)
69 3mwm_A ZUR, putative metal upt 74.3 11 0.00037 30.0 7.2 61 81-141 13-78 (139)
70 2eh3_A Transcriptional regulat 74.1 2 6.9E-05 33.1 2.9 32 82-113 2-38 (179)
71 3i4p_A Transcriptional regulat 73.7 3.9 0.00013 32.9 4.6 43 82-125 3-45 (162)
72 3mq0_A Transcriptional repress 73.7 2.9 0.0001 36.8 4.1 52 86-141 34-85 (275)
73 3ppb_A Putative TETR family tr 73.4 2.4 8.4E-05 32.2 3.1 33 81-113 8-45 (195)
74 3bro_A Transcriptional regulat 73.4 6.7 0.00023 29.2 5.6 43 83-125 35-78 (141)
75 4a6d_A Hydroxyindole O-methylt 72.6 8.4 0.00029 34.5 6.9 68 74-143 20-88 (353)
76 3tgn_A ADC operon repressor AD 72.6 4.8 0.00016 30.3 4.6 42 82-125 38-79 (146)
77 3nrg_A TETR family transcripti 72.3 2.3 8E-05 33.1 2.8 34 78-111 9-47 (217)
78 2o0y_A Transcriptional regulat 72.1 2.4 8.3E-05 36.8 3.2 53 85-141 23-78 (260)
79 2xrn_A HTH-type transcriptiona 71.9 5 0.00017 34.4 5.1 53 86-141 10-62 (241)
80 2q24_A Putative TETR family tr 71.9 2.9 0.0001 32.5 3.3 31 84-114 17-51 (194)
81 2gxg_A 146AA long hypothetical 71.6 9.5 0.00033 28.6 6.1 47 82-132 37-83 (146)
82 2dk5_A DNA-directed RNA polyme 71.2 7.7 0.00026 29.5 5.4 46 83-130 21-67 (91)
83 2y75_A HTH-type transcriptiona 71.2 6.5 0.00022 30.2 5.1 45 86-132 13-59 (129)
84 1z91_A Organic hydroperoxide r 71.1 11 0.00037 28.4 6.3 46 83-131 41-86 (147)
85 3vpr_A Transcriptional regulat 71.0 2.7 9.1E-05 32.6 2.9 32 83-114 4-40 (190)
86 3cdl_A Transcriptional regulat 70.7 3.4 0.00011 32.6 3.4 35 79-113 6-45 (203)
87 3vib_A MTRR; helix-turn-helix 70.6 3 0.0001 32.8 3.1 33 81-113 9-46 (210)
88 2pij_A Prophage PFL 6 CRO; tra 70.5 9.3 0.00032 25.6 5.3 50 86-141 5-54 (67)
89 2zcm_A Biofilm operon icaabcd 69.6 3 0.0001 32.2 2.9 31 83-113 12-43 (192)
90 3fm5_A Transcriptional regulat 69.6 8 0.00027 29.5 5.3 48 82-131 39-86 (150)
91 1j5y_A Transcriptional regulat 69.4 9.1 0.00031 31.6 6.0 49 83-132 22-70 (187)
92 1bja_A Transcription regulator 69.3 5.6 0.00019 31.2 4.4 44 84-130 18-62 (95)
93 1r7j_A Conserved hypothetical 69.3 4.1 0.00014 30.8 3.5 49 85-136 11-64 (95)
94 2vxz_A Pyrsv_GP04; viral prote 69.2 22 0.00074 30.8 8.3 77 82-169 11-87 (165)
95 2kif_A O6-methylguanine-DNA me 69.1 7.9 0.00027 30.8 5.3 57 82-138 3-65 (108)
96 3eco_A MEPR; mutlidrug efflux 69.1 11 0.00036 28.2 5.8 48 83-132 32-80 (139)
97 2k9l_A RNA polymerase sigma fa 69.0 3.5 0.00012 30.3 3.0 41 82-122 32-73 (76)
98 3jsj_A Putative TETR-family tr 68.9 3.1 0.00011 32.0 2.8 33 81-113 8-44 (190)
99 3gzi_A Transcriptional regulat 68.9 3.2 0.00011 32.4 3.0 33 81-113 16-53 (218)
100 2gmg_A Hypothetical protein PF 68.7 5.3 0.00018 32.2 4.2 50 81-132 10-66 (105)
101 2v79_A DNA replication protein 68.7 21 0.00073 28.7 7.9 56 88-143 42-101 (135)
102 3nnr_A Transcriptional regulat 68.6 2.8 9.6E-05 33.5 2.6 34 80-113 3-41 (228)
103 2xig_A Ferric uptake regulatio 68.6 17 0.00058 29.2 7.3 62 80-141 25-91 (150)
104 3bj6_A Transcriptional regulat 68.2 10 0.00036 28.6 5.7 47 83-132 41-87 (152)
105 1mzb_A Ferric uptake regulatio 68.0 14 0.00046 29.1 6.5 61 81-141 17-83 (136)
106 2xzm_8 RPS25E,; ribosome, tran 67.9 5.5 0.00019 33.7 4.3 62 79-140 45-106 (143)
107 2hr3_A Probable transcriptiona 67.9 9.9 0.00034 28.6 5.4 47 83-131 36-82 (147)
108 3deu_A Transcriptional regulat 67.5 10 0.00036 30.0 5.8 48 83-132 54-101 (166)
109 2rek_A Putative TETR-family tr 66.9 3.1 0.00011 32.3 2.5 31 83-113 17-51 (199)
110 1on2_A Transcriptional regulat 66.9 38 0.0013 25.7 8.7 38 95-134 20-57 (142)
111 2fbh_A Transcriptional regulat 66.9 10 0.00035 28.3 5.3 48 83-132 38-85 (146)
112 1jhf_A LEXA repressor; LEXA SO 66.6 11 0.00039 30.8 5.9 49 82-132 10-59 (202)
113 3qkx_A Uncharacterized HTH-typ 66.4 4.7 0.00016 30.5 3.4 32 82-113 8-44 (188)
114 3f1b_A TETR-like transcription 66.4 3.9 0.00013 31.3 2.9 32 82-113 14-50 (203)
115 2rdp_A Putative transcriptiona 66.3 16 0.00053 27.6 6.3 47 83-132 43-89 (150)
116 3nrv_A Putative transcriptiona 66.1 13 0.00045 28.0 5.9 47 83-132 41-87 (148)
117 3mkl_A HTH-type transcriptiona 65.9 8.4 0.00029 29.1 4.7 43 77-119 2-45 (120)
118 2pg4_A Uncharacterized protein 65.7 6.7 0.00023 28.4 4.0 43 86-130 19-62 (95)
119 1lva_A Selenocysteine-specific 65.4 31 0.0011 30.0 8.8 55 84-139 4-58 (258)
120 3he0_A Transcriptional regulat 65.1 4.6 0.00016 30.8 3.1 32 82-113 11-47 (196)
121 3r4k_A Transcriptional regulat 65.0 2.7 9.4E-05 36.5 2.0 51 87-141 11-62 (260)
122 3g1o_A Transcriptional regulat 65.0 4.1 0.00014 33.4 3.0 33 81-113 42-79 (255)
123 1w7p_D VPS36P, YLR417W; ESCRT- 65.0 8.1 0.00028 38.7 5.6 62 81-145 493-561 (566)
124 3dew_A Transcriptional regulat 64.9 4.2 0.00014 31.0 2.8 33 82-114 8-45 (206)
125 1tc3_C Protein (TC3 transposas 64.7 14 0.00046 22.4 4.8 40 78-120 5-44 (51)
126 2h09_A Transcriptional regulat 64.5 47 0.0016 25.6 9.0 55 85-143 43-97 (155)
127 3pas_A TETR family transcripti 64.5 2.4 8.3E-05 32.2 1.4 32 82-113 8-44 (195)
128 1bia_A BIRA bifunctional prote 64.4 13 0.00046 33.4 6.5 58 82-143 5-62 (321)
129 3lhq_A Acrab operon repressor 64.4 4.9 0.00017 31.0 3.1 31 83-113 15-50 (220)
130 3kz9_A SMCR; transcriptional r 64.2 4.7 0.00016 30.8 3.0 33 81-113 16-53 (206)
131 3lwj_A Putative TETR-family tr 64.1 4.3 0.00015 31.3 2.8 32 81-112 11-47 (202)
132 1lj9_A Transcriptional regulat 63.5 21 0.00073 26.6 6.5 46 83-131 30-75 (144)
133 3dp7_A SAM-dependent methyltra 63.5 6.4 0.00022 35.2 4.2 62 78-144 31-92 (363)
134 3nxc_A HTH-type protein SLMA; 63.1 3.3 0.00011 32.1 2.0 33 81-113 23-61 (212)
135 2g7u_A Transcriptional regulat 62.9 13 0.00044 32.1 5.8 53 84-141 13-68 (257)
136 3col_A Putative transcription 62.8 4.8 0.00016 30.5 2.8 32 82-113 10-46 (196)
137 2fd5_A Transcriptional regulat 62.7 5.5 0.00019 30.4 3.1 30 82-111 7-41 (180)
138 3kjx_A Transcriptional regulat 62.6 2.6 8.8E-05 36.4 1.4 71 92-167 5-96 (344)
139 3bpv_A Transcriptional regulat 62.6 43 0.0015 24.6 9.6 47 82-131 29-75 (138)
140 3i53_A O-methyltransferase; CO 62.5 6.6 0.00023 34.2 4.0 59 73-135 16-74 (332)
141 2bv6_A MGRA, HTH-type transcri 62.4 17 0.00057 27.2 5.8 48 83-133 38-85 (142)
142 2w57_A Ferric uptake regulatio 62.1 19 0.00066 28.9 6.4 62 80-141 15-82 (150)
143 3e3m_A Transcriptional regulat 62.1 4.6 0.00016 35.1 2.9 51 93-143 8-79 (355)
144 3g3z_A NMB1585, transcriptiona 62.1 14 0.00047 27.9 5.2 47 82-131 31-77 (145)
145 2eth_A Transcriptional regulat 62.0 50 0.0017 25.1 10.0 48 82-132 44-91 (154)
146 3to7_A Histone acetyltransfera 61.8 7.4 0.00025 36.0 4.3 39 84-122 195-233 (276)
147 1sgm_A Putative HTH-type trans 61.5 5.7 0.0002 30.1 3.0 29 82-110 6-39 (191)
148 2id6_A Transcriptional regulat 61.4 3 0.0001 32.8 1.4 34 79-112 2-40 (202)
149 3mvp_A TETR/ACRR transcription 61.4 5.2 0.00018 31.0 2.8 33 81-113 25-62 (217)
150 3f0c_A TETR-molecule A, transc 61.2 5.9 0.0002 30.8 3.1 33 81-113 10-47 (216)
151 2a61_A Transcriptional regulat 61.1 48 0.0016 24.6 9.4 47 83-132 34-80 (145)
152 3dpj_A Transcription regulator 61.1 6.1 0.00021 30.3 3.1 32 82-113 8-44 (194)
153 2ek5_A Predicted transcription 61.0 58 0.002 25.5 9.4 61 84-147 10-75 (129)
154 3rd3_A Probable transcriptiona 61.0 5.4 0.00018 30.4 2.8 32 81-112 9-45 (197)
155 1t33_A Putative transcriptiona 61.0 4.4 0.00015 31.9 2.4 32 82-113 12-47 (224)
156 2qww_A Transcriptional regulat 61.0 18 0.0006 27.5 5.7 46 83-131 42-87 (154)
157 3eyy_A Putative iron uptake re 60.7 26 0.0009 27.9 7.0 61 81-142 18-83 (145)
158 2fbi_A Probable transcriptiona 60.5 48 0.0016 24.4 10.2 43 83-126 37-79 (142)
159 2iu5_A DHAS, YCEG, HTH-type dh 60.4 5.6 0.00019 31.0 2.9 30 82-111 13-47 (195)
160 3by6_A Predicted transcription 60.3 36 0.0012 26.5 7.6 56 84-142 17-77 (126)
161 2qtq_A Transcriptional regulat 60.2 5.6 0.00019 30.7 2.8 33 81-113 15-52 (213)
162 3ccy_A Putative TETR-family tr 60.0 6.9 0.00023 30.6 3.3 30 82-111 14-48 (203)
163 1uly_A Hypothetical protein PH 59.7 11 0.00039 31.7 4.8 51 82-136 20-73 (192)
164 3dcf_A Transcriptional regulat 59.6 7.3 0.00025 30.1 3.4 34 81-114 30-68 (218)
165 2yve_A Transcriptional regulat 59.6 7.3 0.00025 30.3 3.4 31 83-113 5-40 (185)
166 3s5r_A Transcriptional regulat 59.5 7.1 0.00024 30.3 3.3 32 82-113 10-46 (216)
167 1jgs_A Multiple antibiotic res 59.4 25 0.00086 26.0 6.3 47 82-131 34-80 (138)
168 2nyx_A Probable transcriptiona 59.3 16 0.00055 28.6 5.4 46 83-131 46-91 (168)
169 3cjn_A Transcriptional regulat 59.0 58 0.002 24.8 9.5 46 83-131 53-98 (162)
170 3knw_A Putative transcriptiona 59.0 6.9 0.00024 30.2 3.1 34 80-113 12-50 (212)
171 2zb9_A Putative transcriptiona 59.0 6.1 0.00021 31.0 2.9 33 82-114 23-60 (214)
172 3him_A Probable transcriptiona 58.9 6.9 0.00024 30.0 3.1 32 80-111 14-50 (211)
173 1t6s_A Conserved hypothetical 58.5 21 0.00072 30.1 6.3 51 90-141 15-70 (162)
174 3o60_A LIN0861 protein; PSI, M 58.5 5 0.00017 32.1 2.3 32 81-112 18-55 (185)
175 2dg7_A Putative transcriptiona 58.4 7.4 0.00025 30.1 3.2 33 81-113 6-43 (195)
176 3egq_A TETR family transcripti 58.3 5.2 0.00018 30.2 2.3 32 82-113 4-40 (170)
177 3on4_A Transcriptional regulat 58.2 6.6 0.00023 29.7 2.8 31 82-112 10-45 (191)
178 3rh2_A Hypothetical TETR-like 58.1 6.4 0.00022 30.9 2.8 33 81-113 2-39 (212)
179 1wi9_A Protein C20ORF116 homol 58.1 20 0.00069 27.1 5.4 59 85-144 10-68 (72)
180 2oer_A Probable transcriptiona 58.0 7.1 0.00024 31.0 3.1 32 82-113 24-60 (214)
181 2xub_A DNA-directed RNA polyme 58.0 47 0.0016 32.1 9.4 63 86-151 23-85 (534)
182 3bru_A Regulatory protein, TET 57.9 8.1 0.00028 30.2 3.4 32 81-112 29-65 (222)
183 2ia2_A Putative transcriptiona 57.9 17 0.00057 31.6 5.7 53 84-141 20-75 (265)
184 3f3x_A Transcriptional regulat 57.8 57 0.0019 24.4 8.7 46 83-132 38-83 (144)
185 3bja_A Transcriptional regulat 57.7 18 0.0006 26.7 5.1 47 82-131 33-79 (139)
186 3q0w_A HTH-type transcriptiona 57.7 7 0.00024 31.6 3.1 33 81-113 43-80 (236)
187 2dg8_A Putative TETR-family tr 57.6 6.1 0.00021 30.7 2.6 31 82-112 9-44 (193)
188 3on2_A Probable transcriptiona 57.6 6.1 0.00021 30.0 2.5 32 81-112 11-47 (199)
189 2pex_A Transcriptional regulat 57.3 22 0.00075 27.0 5.7 43 82-125 47-89 (153)
190 3qqa_A CMER; alpha-helical, he 57.3 7.6 0.00026 30.1 3.1 30 82-111 19-53 (216)
191 2rae_A Transcriptional regulat 57.2 7.8 0.00027 30.0 3.2 32 81-112 16-52 (207)
192 1rkt_A Protein YFIR; transcrip 57.1 6.5 0.00022 30.8 2.7 31 82-112 12-47 (205)
193 3neu_A LIN1836 protein; struct 57.1 65 0.0022 24.9 9.0 58 82-142 17-79 (125)
194 1s3j_A YUSO protein; structura 57.1 59 0.002 24.4 9.9 47 83-132 38-84 (155)
195 3bqz_B HTH-type transcriptiona 57.0 8.4 0.00029 29.3 3.3 33 81-113 1-38 (194)
196 3npi_A TETR family regulatory 56.9 3.4 0.00012 33.8 1.1 33 82-114 18-55 (251)
197 3oop_A LIN2960 protein; protei 56.9 20 0.0007 26.8 5.4 48 82-132 37-84 (143)
198 2fq4_A Transcriptional regulat 56.8 7.9 0.00027 30.1 3.1 34 81-114 11-49 (192)
199 3e7q_A Transcriptional regulat 56.8 3.5 0.00012 31.8 1.1 33 81-113 13-50 (215)
200 2hsg_A Glucose-resistance amyl 56.7 5 0.00017 34.3 2.2 24 97-120 2-25 (332)
201 2d6y_A Putative TETR family re 56.6 7.8 0.00027 30.6 3.1 32 82-113 8-44 (202)
202 1zg3_A Isoflavanone 4'-O-methy 56.6 14 0.00047 32.7 5.0 69 73-143 21-100 (358)
203 3anp_C Transcriptional repress 56.6 6.9 0.00023 30.6 2.8 31 82-112 9-44 (204)
204 2b0l_A GTP-sensing transcripti 56.5 4.5 0.00015 31.0 1.6 47 84-133 30-77 (102)
205 1pb6_A Hypothetical transcript 56.5 8.5 0.00029 29.7 3.2 34 80-113 16-54 (212)
206 1zk8_A Transcriptional regulat 56.4 7.2 0.00025 29.7 2.8 30 83-112 9-43 (183)
207 2l01_A Uncharacterized protein 56.3 28 0.00095 26.7 6.0 54 86-142 14-68 (77)
208 2fa5_A Transcriptional regulat 56.2 20 0.00069 27.4 5.4 47 83-132 50-96 (162)
209 3cwr_A Transcriptional regulat 56.1 7.4 0.00025 29.7 2.8 33 81-113 16-53 (208)
210 1ufm_A COP9 complex subunit 4; 55.9 61 0.0021 24.2 8.5 64 75-138 8-72 (84)
211 1vi0_A Transcriptional regulat 55.8 6.3 0.00021 31.3 2.5 32 82-113 8-44 (206)
212 4ham_A LMO2241 protein; struct 55.7 26 0.00087 27.3 6.0 36 94-131 34-70 (134)
213 3frq_A Repressor protein MPHR( 55.6 3.8 0.00013 31.7 1.1 30 84-113 10-44 (195)
214 3b81_A Transcriptional regulat 55.6 11 0.00036 29.0 3.6 32 81-112 10-46 (203)
215 4aci_A HTH-type transcriptiona 55.4 4.4 0.00015 31.0 1.4 33 81-113 13-50 (191)
216 2guh_A Putative TETR-family tr 55.4 7.9 0.00027 31.3 3.0 32 82-113 39-75 (214)
217 2g7s_A Transcriptional regulat 55.4 7.9 0.00027 29.2 2.9 32 82-113 8-44 (194)
218 3jvd_A Transcriptional regulat 55.3 7.5 0.00026 33.6 3.0 65 95-164 4-89 (333)
219 3qbm_A TETR transcriptional re 55.3 7.7 0.00026 29.6 2.8 31 83-113 8-43 (199)
220 1fp2_A Isoflavone O-methyltran 55.3 23 0.00079 31.2 6.3 68 73-142 27-97 (352)
221 3bhq_A Transcriptional regulat 55.2 7.5 0.00026 30.6 2.8 33 81-113 11-48 (211)
222 1neq_A DNA-binding protein NER 55.2 8.2 0.00028 27.9 2.8 31 84-116 11-41 (74)
223 2l02_A Uncharacterized protein 55.1 36 0.0012 26.3 6.5 55 86-143 12-66 (82)
224 3ech_A MEXR, multidrug resista 54.5 14 0.00048 27.8 4.1 46 83-131 38-83 (142)
225 2ibd_A Possible transcriptiona 54.4 8.1 0.00028 30.2 2.9 32 82-113 14-50 (204)
226 3g7r_A Putative transcriptiona 54.3 7.5 0.00026 31.1 2.7 34 80-113 33-71 (221)
227 3hta_A EBRA repressor; TETR fa 54.3 7.8 0.00027 31.0 2.8 31 83-113 29-64 (217)
228 2k4b_A Transcriptional regulat 53.9 25 0.00085 26.9 5.5 58 82-142 35-96 (99)
229 2g9w_A Conserved hypothetical 53.6 25 0.00084 27.3 5.5 53 82-136 9-65 (138)
230 3e6m_A MARR family transcripti 53.4 24 0.00082 27.3 5.4 47 83-132 54-100 (161)
231 2g7g_A RHA04620, putative tran 53.4 7.3 0.00025 31.8 2.5 30 83-113 12-45 (213)
232 2k53_A A3DK08 protein; NESG, C 53.3 14 0.00047 27.3 3.8 40 85-124 17-65 (76)
233 2qko_A Possible transcriptiona 53.2 10 0.00034 29.9 3.2 30 82-111 28-62 (215)
234 3txn_A 26S proteasome regulato 53.1 42 0.0014 31.6 8.0 66 82-147 301-366 (394)
235 3boq_A Transcriptional regulat 53.0 12 0.00042 28.6 3.6 48 83-132 48-95 (160)
236 1uxc_A FRUR (1-57), fructose r 52.6 8.4 0.00029 27.5 2.4 22 98-119 1-22 (65)
237 4hbl_A Transcriptional regulat 52.5 28 0.00096 26.5 5.6 43 82-125 41-83 (149)
238 2f07_A YVDT; helix-turn-helix, 52.4 8.8 0.0003 30.1 2.8 32 81-112 9-45 (197)
239 3jw4_A Transcriptional regulat 52.3 13 0.00045 28.2 3.7 44 82-125 41-85 (148)
240 2np5_A Transcriptional regulat 52.1 8 0.00027 30.5 2.5 31 83-113 10-45 (203)
241 1jko_C HIN recombinase, DNA-in 52.1 17 0.00059 22.4 3.6 38 79-119 6-43 (52)
242 3bni_A Putative TETR-family tr 52.0 12 0.00042 30.0 3.7 32 81-112 42-78 (229)
243 3hrs_A Metalloregulator SCAR; 51.5 12 0.0004 31.7 3.6 40 93-134 16-55 (214)
244 2gen_A Probable transcriptiona 51.4 9.4 0.00032 29.9 2.8 31 83-113 8-43 (197)
245 2qib_A TETR-family transcripti 51.4 10 0.00034 30.6 3.0 32 82-113 13-49 (231)
246 1ui5_A A-factor receptor homol 51.2 9.4 0.00032 30.5 2.8 31 82-112 9-44 (215)
247 3tqn_A Transcriptional regulat 51.2 12 0.0004 28.6 3.2 61 81-144 12-77 (113)
248 3la7_A Global nitrogen regulat 51.2 30 0.001 28.3 6.0 34 96-131 192-225 (243)
249 2wte_A CSA3; antiviral protein 51.0 21 0.00072 31.3 5.3 49 82-133 152-200 (244)
250 1qpz_A PURA, protein (purine n 51.0 7.8 0.00027 33.3 2.4 22 98-119 1-22 (340)
251 3c7j_A Transcriptional regulat 51.0 42 0.0014 28.5 7.1 42 93-136 45-87 (237)
252 3lsj_A DEST; transcriptional r 51.0 10 0.00034 29.8 2.9 30 82-111 11-46 (220)
253 2xdn_A HTH-type transcriptiona 50.9 9 0.00031 30.0 2.6 31 82-112 11-46 (210)
254 1qzz_A RDMB, aclacinomycin-10- 50.7 14 0.00048 32.4 4.1 67 72-142 26-92 (374)
255 2gqq_A Leucine-responsive regu 50.6 4 0.00014 32.8 0.5 43 82-125 13-55 (163)
256 2id3_A Putative transcriptiona 50.1 10 0.00035 30.5 2.8 32 82-113 40-76 (225)
257 3aqt_A Bacterial regulatory pr 50.1 9.7 0.00033 31.1 2.8 31 81-111 45-80 (245)
258 3mnl_A KSTR, transcriptional r 49.9 6.1 0.00021 30.3 1.4 32 82-113 20-56 (203)
259 2qc0_A Uncharacterized protein 49.8 25 0.00086 32.3 5.8 64 80-146 295-359 (373)
260 1mgt_A MGMT, protein (O6-methy 49.7 22 0.00075 30.5 5.0 55 81-135 90-149 (174)
261 2xub_A DNA-directed RNA polyme 49.7 52 0.0018 31.8 8.2 61 86-147 364-430 (534)
262 3ke2_A Uncharacterized protein 49.6 27 0.00094 28.6 5.3 48 85-135 23-70 (117)
263 3geu_A Intercellular adhesion 49.5 6.6 0.00023 30.1 1.6 32 82-113 3-39 (189)
264 2iai_A Putative transcriptiona 49.5 10 0.00035 30.5 2.8 31 83-113 35-66 (230)
265 3ljl_A Transcriptional regulat 49.3 6.9 0.00024 29.9 1.7 33 82-114 14-51 (156)
266 2nx4_A Transcriptional regulat 49.2 11 0.00037 29.5 2.8 31 82-112 10-45 (194)
267 3fiw_A Putative TETR-family tr 49.2 8.9 0.0003 31.4 2.4 31 83-113 26-61 (211)
268 1lva_A Selenocysteine-specific 49.2 17 0.00059 31.7 4.4 63 70-133 129-192 (258)
269 2wui_A MEXZ, transcriptional r 49.2 11 0.00039 29.6 3.0 33 81-113 10-47 (210)
270 3cdh_A Transcriptional regulat 48.9 22 0.00075 27.1 4.5 46 83-131 44-89 (155)
271 2k5e_A Uncharacterized protein 48.9 19 0.00067 26.3 4.0 42 85-126 19-69 (73)
272 3bjb_A Probable transcriptiona 48.6 11 0.00037 30.0 2.7 33 82-114 22-59 (207)
273 3lsg_A Two-component response 48.6 28 0.00096 25.3 4.9 39 83-121 3-43 (103)
274 1okr_A MECI, methicillin resis 48.5 22 0.00074 26.3 4.3 56 83-141 11-71 (123)
275 2hyt_A TETR-family transcripti 48.5 11 0.00036 29.5 2.6 30 82-111 12-46 (197)
276 2ras_A Transcriptional regulat 48.2 13 0.00043 29.0 3.1 32 82-113 11-47 (212)
277 3gwz_A MMCR; methyltransferase 48.2 11 0.00039 33.7 3.1 45 96-143 70-114 (369)
278 3kkd_A Transcriptional regulat 48.1 9.1 0.00031 30.7 2.3 31 81-111 34-69 (237)
279 2pq8_A Probable histone acetyl 48.0 8.1 0.00028 35.7 2.2 38 85-122 196-233 (278)
280 2z99_A Putative uncharacterize 47.9 34 0.0011 30.4 6.1 62 79-141 11-76 (219)
281 3u2r_A Regulatory protein MARR 47.9 18 0.00063 28.1 4.0 57 83-141 47-107 (168)
282 2hs5_A Putative transcriptiona 47.8 83 0.0028 26.6 8.4 66 77-146 27-97 (239)
283 1z0x_A Transcriptional regulat 47.6 9.4 0.00032 31.2 2.3 32 83-114 6-43 (220)
284 2jj7_A Hemolysin II regulatory 47.5 6.9 0.00024 29.9 1.4 33 82-114 7-44 (186)
285 3s2w_A Transcriptional regulat 47.4 33 0.0011 26.3 5.3 47 83-132 51-97 (159)
286 2w53_A Repressor, SMet; antibi 47.3 12 0.0004 29.6 2.8 32 82-113 11-47 (219)
287 3k0l_A Repressor protein; heli 47.0 20 0.00069 27.7 4.1 48 82-132 46-93 (162)
288 2fbq_A Probable transcriptiona 47.0 11 0.00039 30.5 2.7 31 82-112 7-42 (235)
289 2pi2_A Replication protein A 3 47.0 4.1 0.00014 36.2 0.0 46 82-129 207-255 (270)
290 3c2b_A Transcriptional regulat 46.9 11 0.00037 29.5 2.5 34 81-114 14-52 (221)
291 2vn2_A DNAD, chromosome replic 46.9 22 0.00077 27.7 4.3 47 96-142 50-100 (128)
292 4aik_A Transcriptional regulat 46.5 34 0.0012 26.8 5.4 43 83-125 32-74 (151)
293 3oio_A Transcriptional regulat 45.9 25 0.00085 26.1 4.3 37 84-120 9-46 (113)
294 2qvo_A Uncharacterized protein 45.9 20 0.00069 26.0 3.7 44 96-141 29-72 (95)
295 2hyj_A Putative TETR-family tr 45.9 11 0.00039 29.6 2.5 32 82-113 12-48 (200)
296 2i10_A Putative TETR transcrip 45.8 13 0.00044 29.3 2.8 29 85-113 18-47 (202)
297 3h5o_A Transcriptional regulat 45.4 4.4 0.00015 34.9 0.0 24 96-119 3-26 (339)
298 2o20_A Catabolite control prot 45.3 4.5 0.00015 34.7 0.0 25 96-120 4-28 (332)
299 2r3s_A Uncharacterized protein 45.3 15 0.00053 31.5 3.4 59 78-143 22-80 (335)
300 2frh_A SARA, staphylococcal ac 45.3 34 0.0011 25.9 5.0 43 83-125 38-81 (127)
301 2zcx_A SCO7815, TETR-family tr 45.1 14 0.00049 30.1 3.1 32 81-112 22-58 (231)
302 3loc_A HTH-type transcriptiona 44.7 7 0.00024 30.1 1.1 32 82-113 18-54 (212)
303 3l4g_A Phenylalanyl-tRNA synth 44.7 4.6 0.00016 39.9 0.0 56 81-136 4-68 (508)
304 2of7_A Putative TETR-family tr 44.6 15 0.0005 30.4 3.1 33 81-113 47-84 (260)
305 3nqo_A MARR-family transcripti 44.6 29 0.001 28.0 4.8 58 82-141 41-102 (189)
306 3eup_A Transcriptional regulat 44.5 7.3 0.00025 29.8 1.1 31 82-112 11-46 (204)
307 3cjd_A Transcriptional regulat 44.4 14 0.00048 29.1 2.8 33 80-112 10-47 (198)
308 3bil_A Probable LACI-family tr 44.3 4.7 0.00016 35.1 0.0 26 95-120 6-31 (348)
309 2l8n_A Transcriptional repress 44.2 9.1 0.00031 27.4 1.5 23 96-118 8-30 (67)
310 2yu3_A DNA-directed RNA polyme 44.2 43 0.0015 26.0 5.5 43 82-124 37-80 (95)
311 4fx0_A Probable transcriptiona 43.5 29 0.00099 27.1 4.5 47 83-131 34-84 (148)
312 3iz6_V 40S ribosomal protein S 43.5 25 0.00084 28.4 4.1 60 80-140 44-103 (108)
313 3lmm_A Uncharacterized protein 43.4 5 0.00017 39.6 0.0 51 82-135 516-566 (583)
314 3dv8_A Transcriptional regulat 43.4 29 0.00098 27.4 4.5 48 83-132 148-202 (220)
315 2hku_A A putative transcriptio 43.2 17 0.00057 28.6 3.1 33 81-113 19-55 (215)
316 3p9c_A Caffeic acid O-methyltr 42.9 21 0.00071 32.1 4.0 57 74-132 32-94 (364)
317 3mn2_A Probable ARAC family tr 42.9 31 0.001 25.3 4.3 37 85-121 5-42 (108)
318 2ou2_A Histone acetyltransfera 42.9 14 0.00046 34.3 2.8 38 85-122 194-237 (280)
319 3kp7_A Transcriptional regulat 42.7 16 0.00056 27.8 2.9 45 83-131 39-83 (151)
320 3v6g_A Probable transcriptiona 42.7 15 0.00051 29.5 2.8 31 82-112 14-49 (208)
321 2np3_A Putative TETR-family re 42.7 6 0.00021 31.1 0.4 30 83-112 35-65 (212)
322 1hqc_A RUVB; extended AAA-ATPa 42.6 68 0.0023 27.1 7.0 60 78-138 244-304 (324)
323 3ni7_A Bacterial regulatory pr 42.1 24 0.00083 28.6 4.0 32 82-113 7-43 (213)
324 2p8t_A Hypothetical protein PH 42.1 31 0.001 30.2 4.8 41 84-124 17-57 (200)
325 1v4r_A Transcriptional repress 41.6 2.4 8.1E-05 31.6 -2.0 37 94-132 31-68 (102)
326 1x19_A CRTF-related protein; m 41.6 23 0.00078 31.2 4.0 65 72-143 41-105 (359)
327 3hsr_A HTH-type transcriptiona 41.5 27 0.00093 26.3 3.9 47 83-132 37-83 (140)
328 1tbx_A ORF F-93, hypothetical 41.4 94 0.0032 22.1 8.4 47 83-132 9-59 (99)
329 3rkx_A Biotin-[acetyl-COA-carb 41.3 38 0.0013 30.7 5.5 41 83-123 4-45 (323)
330 2b5a_A C.BCLI; helix-turn-heli 40.9 13 0.00045 25.0 1.9 33 81-115 9-41 (77)
331 3oou_A LIN2118 protein; protei 40.7 34 0.0012 25.1 4.3 37 85-121 8-45 (108)
332 1tw3_A COMT, carminomycin 4-O- 40.6 16 0.00053 32.1 2.7 63 74-142 31-93 (360)
333 1wrj_A Methylated-DNA--protein 40.5 28 0.00097 29.2 4.2 73 81-159 70-146 (156)
334 2fxa_A Protease production reg 40.5 47 0.0016 27.5 5.6 43 82-125 48-90 (207)
335 3u5c_Z RP45, S31, YS23, 40S ri 40.4 28 0.00097 28.1 4.0 60 80-140 43-102 (108)
336 4b4t_O 26S proteasome regulato 40.3 26 0.00088 32.4 4.3 76 95-171 305-383 (393)
337 3ryp_A Catabolite gene activat 40.1 61 0.0021 25.3 5.9 49 82-132 139-200 (210)
338 2ip2_A Probable phenazine-spec 39.8 25 0.00084 30.4 3.9 53 79-135 25-77 (334)
339 3dkw_A DNR protein; CRP-FNR, H 39.6 76 0.0026 25.0 6.5 48 82-131 152-210 (227)
340 1qpz_A PURA, protein (purine n 39.6 80 0.0027 26.9 7.0 56 77-132 25-94 (340)
341 2ozu_A Histone acetyltransfera 39.6 23 0.00077 33.0 3.7 38 84-121 200-238 (284)
342 2g3b_A Putative TETR-family tr 39.6 9.3 0.00032 30.4 1.1 32 82-113 3-39 (208)
343 1bl0_A Protein (multiple antib 39.5 40 0.0014 25.7 4.7 41 81-121 10-51 (129)
344 2oi8_A Putative regulatory pro 39.5 22 0.00075 28.7 3.3 36 79-114 13-53 (216)
345 1z7u_A Hypothetical protein EF 39.3 59 0.002 24.3 5.5 44 80-125 20-64 (112)
346 3eqx_A FIC domain containing t 39.1 48 0.0016 30.8 5.9 58 85-145 300-358 (373)
347 1jye_A Lactose operon represso 38.8 6.5 0.00022 34.2 0.0 25 97-121 3-27 (349)
348 2hsg_A Glucose-resistance amyl 38.6 58 0.002 27.6 6.0 56 77-132 27-96 (332)
349 1ylf_A RRF2 family protein; st 38.6 34 0.0012 27.1 4.3 39 86-124 18-57 (149)
350 3t8r_A Staphylococcus aureus C 38.5 49 0.0017 26.3 5.2 45 86-132 15-61 (143)
351 2oz6_A Virulence factor regula 38.4 66 0.0022 25.0 5.9 34 97-132 164-197 (207)
352 2o7t_A Transcriptional regulat 38.3 22 0.00074 27.6 3.0 32 82-113 8-44 (199)
353 2qlz_A Transcription factor PF 38.2 36 0.0012 29.8 4.7 55 81-139 164-218 (232)
354 2pz9_A Putative regulatory pro 38.2 12 0.00041 29.9 1.5 32 82-113 30-66 (226)
355 1fp1_D Isoliquiritigenin 2'-O- 38.2 41 0.0014 29.9 5.2 66 76-143 38-118 (372)
356 3sxy_A Transcriptional regulat 38.1 96 0.0033 25.5 7.1 69 76-147 10-82 (218)
357 2k9s_A Arabinose operon regula 37.9 46 0.0016 24.3 4.6 37 85-121 6-44 (107)
358 2fi0_A Conserved domain protei 37.5 9.7 0.00033 28.1 0.8 27 95-121 47-73 (81)
359 2g7h_A Methylated-DNA--protein 37.4 23 0.00078 30.3 3.2 73 81-159 78-154 (167)
360 3bwg_A Uncharacterized HTH-typ 37.4 14 0.00047 31.6 1.9 60 82-144 9-73 (239)
361 3crj_A Transcription regulator 37.4 21 0.0007 28.1 2.7 34 80-113 12-50 (199)
362 3u1d_A Uncharacterized protein 37.3 50 0.0017 27.6 5.2 70 80-151 27-107 (151)
363 1sd4_A Penicillinase repressor 37.2 54 0.0018 24.2 5.0 53 82-137 10-66 (126)
364 1z6r_A MLC protein; transcript 37.2 39 0.0013 30.5 4.9 40 84-124 18-57 (406)
365 3dbi_A Sugar-binding transcrip 37.1 7.2 0.00024 33.4 0.0 67 97-166 3-90 (338)
366 2pjp_A Selenocysteine-specific 37.0 29 0.00099 26.8 3.5 50 82-134 7-56 (121)
367 2gfn_A HTH-type transcriptiona 36.5 19 0.00065 28.6 2.4 32 81-112 8-44 (209)
368 1b4a_A Arginine repressor; hel 36.3 93 0.0032 25.6 6.7 56 84-144 6-67 (149)
369 2y9k_A Protein INVG; protein t 36.3 28 0.00096 27.6 3.4 61 81-144 7-72 (137)
370 1pdn_C Protein (PRD paired); p 35.8 68 0.0023 23.1 5.2 46 75-123 14-59 (128)
371 3ctp_A Periplasmic binding pro 35.7 7.7 0.00026 33.2 0.0 25 97-121 2-26 (330)
372 4b4t_Q 26S proteasome regulato 35.6 1.1E+02 0.0038 25.9 7.2 68 79-146 338-405 (434)
373 3t72_q RNA polymerase sigma fa 35.6 1.2E+02 0.004 23.1 6.7 43 77-119 18-61 (99)
374 2v57_A TETR family transcripti 35.6 21 0.00073 27.1 2.5 32 81-113 13-48 (190)
375 2k9q_A Uncharacterized protein 35.6 36 0.0012 23.3 3.5 32 81-114 1-32 (77)
376 3gva_A Alkyltransferase-like p 35.5 27 0.00094 28.1 3.2 57 82-138 5-67 (116)
377 3kfw_X Uncharacterized protein 35.3 79 0.0027 28.0 6.5 59 80-143 2-64 (247)
378 4b4t_R RPN7, 26S proteasome re 35.2 1.3E+02 0.0043 27.8 8.1 69 79-147 329-397 (429)
379 2ev1_A Hypothetical protein RV 35.0 26 0.00088 31.2 3.3 39 98-141 79-117 (222)
380 3iuo_A ATP-dependent DNA helic 34.9 50 0.0017 25.9 4.6 39 86-124 21-59 (122)
381 2wv0_A YVOA, HTH-type transcri 34.7 26 0.0009 30.0 3.2 58 83-143 15-77 (243)
382 1z05_A Transcriptional regulat 34.3 46 0.0016 30.5 4.9 41 83-124 40-80 (429)
383 3kjx_A Transcriptional regulat 34.2 62 0.0021 27.7 5.5 57 77-133 35-105 (344)
384 3c07_A Putative TETR-family tr 33.8 29 0.001 29.3 3.3 33 81-113 40-77 (273)
385 1x57_A Endothelial differentia 33.7 69 0.0023 22.5 4.9 38 75-114 6-43 (91)
386 1fse_A GERE; helix-turn-helix 33.7 59 0.002 21.7 4.3 47 77-127 10-56 (74)
387 3lwf_A LIN1550 protein, putati 33.6 59 0.002 26.7 5.0 44 87-132 32-77 (159)
388 2k9m_A RNA polymerase sigma fa 33.1 15 0.00052 29.6 1.4 39 85-123 26-65 (130)
389 2ns0_A Hypothetical protein; r 32.9 64 0.0022 25.0 4.8 65 82-150 7-78 (85)
390 1ft9_A Carbon monoxide oxidati 32.5 68 0.0023 25.5 5.2 51 81-133 133-197 (222)
391 2fbk_A Transcriptional regulat 32.4 22 0.00074 28.2 2.1 44 82-125 69-114 (181)
392 3eet_A Putative GNTR-family tr 32.3 29 0.00099 30.4 3.1 44 82-125 33-81 (272)
393 1hw1_A FADR, fatty acid metabo 32.0 46 0.0016 27.5 4.2 59 81-142 10-73 (239)
394 3dbi_A Sugar-binding transcrip 31.6 27 0.00093 29.8 2.8 57 77-133 28-100 (338)
395 3edp_A LIN2111 protein; APC883 31.5 27 0.00094 29.8 2.8 59 81-142 12-75 (236)
396 4ev0_A Transcription regulator 31.4 64 0.0022 25.2 4.8 48 82-131 141-195 (216)
397 1z6t_A APAF-1, apoptotic prote 31.3 1.4E+02 0.0049 27.7 7.8 74 76-152 372-448 (591)
398 3df8_A Possible HXLR family tr 31.2 63 0.0021 24.4 4.5 57 83-141 28-85 (111)
399 3mcz_A O-methyltransferase; ad 31.0 36 0.0012 29.6 3.5 48 93-145 52-99 (352)
400 3b7h_A Prophage LP1 protein 11 30.9 59 0.002 21.7 3.9 32 81-114 6-37 (78)
401 1xd7_A YWNA; structural genomi 30.9 61 0.0021 25.5 4.6 38 86-124 13-50 (145)
402 3f8m_A GNTR-family protein tra 30.5 48 0.0016 28.5 4.1 46 94-143 32-78 (248)
403 1sfe_A ADA O6-methylguanine-DN 30.4 44 0.0015 28.6 3.9 74 81-159 95-174 (180)
404 1zug_A Phage 434 CRO protein; 30.3 58 0.002 21.2 3.7 31 83-115 4-34 (71)
405 3qyf_A Crispr-associated prote 30.0 36 0.0012 32.0 3.5 67 71-148 197-265 (324)
406 2hzt_A Putative HTH-type trans 29.9 64 0.0022 23.9 4.3 41 83-125 15-56 (107)
407 4g6q_A Putative uncharacterize 29.9 93 0.0032 25.6 5.7 54 79-136 20-74 (182)
408 3iwz_A CAP-like, catabolite ac 29.6 77 0.0026 25.0 5.0 48 83-132 160-220 (230)
409 1ais_B TFB TFIIB, protein (tra 29.5 54 0.0018 26.8 4.1 39 88-126 156-194 (200)
410 3ulq_B Transcriptional regulat 29.3 58 0.002 24.0 3.9 48 76-127 27-74 (90)
411 1fx7_A Iron-dependent represso 29.3 2.3E+02 0.0079 23.6 8.2 58 84-144 8-68 (230)
412 3e97_A Transcriptional regulat 29.3 66 0.0022 25.6 4.5 35 96-132 174-208 (231)
413 1uxc_A FRUR (1-57), fructose r 29.3 33 0.0011 24.3 2.5 22 78-99 29-50 (65)
414 3ic7_A Putative transcriptiona 29.2 14 0.00047 28.9 0.4 84 79-165 12-103 (126)
415 4ac0_A Tetracycline repressor 29.1 18 0.00062 29.7 1.2 30 84-113 5-39 (202)
416 3b02_A Transcriptional regulat 29.1 57 0.0019 25.5 4.1 51 81-133 110-173 (195)
417 3ihu_A Transcriptional regulat 29.0 2.3E+02 0.0077 23.2 7.9 50 94-147 36-86 (222)
418 2l8n_A Transcriptional repress 28.9 34 0.0012 24.4 2.5 22 78-99 35-56 (67)
419 2hxi_A Putative transcriptiona 28.8 32 0.0011 28.8 2.7 32 82-113 29-65 (241)
420 4ich_A Transcriptional regulat 28.4 34 0.0012 29.2 2.8 34 80-113 118-156 (311)
421 3rag_A Uncharacterized protein 28.2 85 0.0029 28.1 5.5 58 75-132 110-175 (242)
422 3l09_A Putative transcriptiona 27.9 2E+02 0.007 25.8 8.0 68 80-149 21-96 (266)
423 2jpc_A SSRB; DNA binding prote 27.9 60 0.0021 21.1 3.5 33 95-127 11-43 (61)
424 2fmy_A COOA, carbon monoxide o 27.7 68 0.0023 25.4 4.4 50 81-132 137-200 (220)
425 1je8_A Nitrate/nitrite respons 27.7 1.2E+02 0.004 21.6 5.3 47 78-128 21-67 (82)
426 3d0s_A Transcriptional regulat 27.3 77 0.0026 25.2 4.6 34 97-132 177-210 (227)
427 3fx3_A Cyclic nucleotide-bindi 27.2 1.4E+02 0.0047 23.8 6.1 56 79-138 150-215 (237)
428 2elh_A CG11849-PA, LD40883P; s 26.9 1.1E+02 0.0038 21.9 5.0 40 78-120 22-61 (87)
429 3k69_A Putative transcription 26.9 41 0.0014 27.5 3.0 39 86-124 16-55 (162)
430 2zcw_A TTHA1359, transcription 26.9 93 0.0032 24.3 5.0 48 83-132 119-179 (202)
431 1r69_A Repressor protein CI; g 26.8 72 0.0025 20.7 3.7 29 85-115 4-32 (69)
432 3pfi_A Holliday junction ATP-d 26.8 1.3E+02 0.0043 25.8 6.2 52 85-137 266-318 (338)
433 2r1j_L Repressor protein C2; p 26.8 66 0.0023 20.7 3.5 31 82-114 5-35 (68)
434 1stz_A Heat-inducible transcri 26.5 89 0.0031 28.6 5.4 43 82-124 17-65 (338)
435 1y7y_A C.AHDI; helix-turn-heli 26.3 82 0.0028 20.7 3.9 31 82-114 13-43 (74)
436 2ra5_A Putative transcriptiona 26.2 15 0.0005 31.7 0.1 49 77-125 19-68 (247)
437 2qlz_A Transcription factor PF 26.2 79 0.0027 27.6 4.8 53 80-136 10-63 (232)
438 1adr_A P22 C2 repressor; trans 26.0 67 0.0023 21.2 3.5 31 82-114 5-35 (76)
439 1pzn_A RAD51, DNA repair and r 25.4 95 0.0033 27.9 5.4 52 72-125 33-92 (349)
440 2o8x_A Probable RNA polymerase 25.3 1.2E+02 0.004 19.9 4.6 50 77-129 14-63 (70)
441 1zyb_A Transcription regulator 25.2 1E+02 0.0034 24.9 5.0 51 80-132 161-219 (232)
442 3lst_A CALO1 methyltransferase 25.0 29 0.001 30.5 1.9 49 79-131 39-87 (348)
443 1k78_A Paired box protein PAX5 25.0 1.3E+02 0.0043 23.1 5.3 46 76-124 30-75 (149)
444 2w48_A Sorbitol operon regulat 24.8 1.3E+02 0.0045 26.5 6.0 42 94-137 18-59 (315)
445 2hoe_A N-acetylglucosamine kin 24.7 46 0.0016 29.9 3.1 37 86-124 24-60 (380)
446 2opt_A Actii protein; helical 24.7 38 0.0013 28.4 2.4 32 83-114 7-43 (234)
447 2wiu_B HTH-type transcriptiona 24.6 87 0.003 21.4 3.9 49 80-130 10-69 (88)
448 1ku3_A Sigma factor SIGA; heli 24.5 1E+02 0.0035 21.1 4.3 43 77-119 9-52 (73)
449 3h5o_A Transcriptional regulat 24.4 52 0.0018 28.1 3.2 57 77-133 29-99 (339)
450 3lmm_A Uncharacterized protein 24.1 1E+02 0.0036 30.3 5.7 63 85-151 433-498 (583)
451 2di3_A Bacterial regulatory pr 23.9 53 0.0018 27.4 3.2 48 94-143 24-77 (239)
452 1tty_A Sigma-A, RNA polymerase 23.8 88 0.003 22.3 4.0 51 77-128 17-69 (87)
453 3f6w_A XRE-family like protein 23.8 82 0.0028 21.5 3.7 31 82-114 14-44 (83)
454 2gau_A Transcriptional regulat 23.7 1.3E+02 0.0045 23.9 5.3 36 96-133 179-214 (232)
455 1u8b_A ADA polyprotein; protei 23.4 51 0.0017 25.1 2.7 41 80-120 74-116 (133)
456 4b8x_A SCO5413, possible MARR- 23.3 1.1E+02 0.0038 23.5 4.7 47 83-131 36-83 (147)
457 1d5y_A ROB transcription facto 23.1 83 0.0028 26.4 4.2 35 85-119 6-41 (292)
458 2g7l_A TETR-family transcripti 22.9 51 0.0018 27.6 2.9 32 83-114 20-56 (243)
459 3ctp_A Periplasmic binding pro 22.7 68 0.0023 27.3 3.6 56 77-132 27-96 (330)
460 3e3m_A Transcriptional regulat 22.6 64 0.0022 27.8 3.5 57 77-133 37-107 (355)
461 3lap_A Arginine repressor; arg 22.4 2.2E+02 0.0074 24.1 6.7 57 72-146 27-85 (170)
462 2vpr_A Tetracycline resistance 22.3 27 0.00094 28.5 1.0 31 83-113 5-40 (207)
463 2jvl_A TRMBF1; coactivator, he 22.2 98 0.0034 23.0 4.1 64 72-135 24-98 (107)
464 4ets_A Ferric uptake regulatio 22.2 1.4E+02 0.0049 24.2 5.4 61 81-141 32-99 (162)
465 2l49_A C protein; P2 bacteriop 22.1 99 0.0034 21.8 3.9 32 81-114 3-34 (99)
466 3dpl_C Cullin-5; ubiquitin, NE 22.0 61 0.0021 30.1 3.4 62 85-147 202-276 (382)
467 2jn6_A Protein CGL2762, transp 21.8 1.1E+02 0.0039 21.9 4.3 43 78-121 5-47 (97)
468 2kpj_A SOS-response transcript 21.7 72 0.0024 22.7 3.1 31 82-114 9-39 (94)
469 1u78_A TC3 transposase, transp 21.5 1.4E+02 0.0046 22.1 4.8 42 77-121 5-46 (141)
470 3kz3_A Repressor protein CI; f 21.5 1.1E+02 0.0038 20.9 4.0 31 82-114 12-42 (80)
471 2ovg_A Phage lambda CRO; trans 21.4 2.1E+02 0.0072 20.2 5.5 45 87-140 7-53 (66)
472 1x3u_A Transcriptional regulat 21.4 1.9E+02 0.0066 19.4 5.3 33 94-126 28-60 (79)
473 2ef8_A C.ECOT38IS, putative tr 21.4 1.1E+02 0.0038 20.6 3.9 31 82-114 10-40 (84)
474 2ict_A Antitoxin HIGA; helix-t 21.0 1.2E+02 0.0041 21.3 4.2 33 81-115 7-39 (94)
475 2vqc_A Hypothetical 13.2 kDa p 20.5 1.5E+02 0.0052 23.8 5.0 59 85-143 17-79 (118)
476 2fsw_A PG_0823 protein; alpha- 20.4 1.6E+02 0.0056 21.5 5.0 41 83-125 26-67 (107)
477 1nri_A Hypothetical protein HI 20.4 20 0.00068 31.9 -0.2 43 85-131 260-302 (306)
478 3h5t_A Transcriptional regulat 20.2 48 0.0017 28.6 2.2 21 77-97 34-54 (366)
479 3bqy_A Putative TETR family tr 20.1 63 0.0022 26.2 2.8 28 86-113 10-38 (209)
480 3gr5_A ESCC; secretin, type II 20.1 51 0.0017 27.1 2.2 63 80-144 22-87 (156)
No 1
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=96.00 E-value=0.019 Score=41.21 Aligned_cols=51 Identities=10% Similarity=0.143 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCc
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG 135 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesG 135 (276)
.+.+|++.+++.+..+|+.|+|.+.|++...+.+.|..|.++.- ++.++.|
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~--I~~~~~G 61 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDR--VSSPSPK 61 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTS--EEEEETT
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCc--EecCCCc
Confidence 57899999999888899999999999999999999999987644 6656666
No 2
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=95.83 E-value=0.016 Score=43.66 Aligned_cols=49 Identities=24% Similarity=0.339 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHc-----CCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 82 DVRNRAMDAVDAC-----NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 82 ~~~~rim~Ave~l-----g~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
+-..+|++.+++. ||.+|+.|+|...|+|...+++.|.+|..+ |.|+-.
T Consensus 4 ~r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~k--G~I~R~ 57 (77)
T 2jt1_A 4 SIVTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDV--GVLEKV 57 (77)
T ss_dssp THHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC--CcEEec
Confidence 3567899999888 999999999999999999999999999876 344443
No 3
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=95.75 E-value=0.015 Score=43.51 Aligned_cols=45 Identities=27% Similarity=0.425 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023862 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (276)
Q Consensus 85 ~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeV 131 (276)
+.++.-+....+..|+|+||+.-|.++++|+.+|..|-+| |.|+-
T Consensus 6 eaLLall~s~~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~--G~LRK 50 (68)
T 3i71_A 6 DELLALLTSVRQGMTAGEVAAHFGWPLEKARNALEQLFSA--GTLRK 50 (68)
T ss_dssp HHHHHHHHHCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHhccccHHHHHHHhCCcHHHHHHHHHHHHhc--chhhh
Confidence 5677888899999999999999999999999999999886 44443
No 4
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=95.73 E-value=0.011 Score=52.91 Aligned_cols=56 Identities=16% Similarity=0.219 Sum_probs=48.7
Q ss_pred CchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcC
Q 023862 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (276)
Q Consensus 80 ~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP 142 (276)
...+.-.+++.+. .|.-+|+.++|+.+|.+.+++++.|.+|. .++.+++|+|+. ||
T Consensus 20 ~~~~~~~llr~la-~Grpv~~~~LA~~~g~~~~~v~~~L~~l~-----~~~~D~~G~Ivg-yp 75 (220)
T 3f2g_A 20 TADLLVPLLRELA-KGRPVSRTTLAGILDWPAERVAAVLEQAT-----STEYDKDGNIIG-YG 75 (220)
T ss_dssp HHHHHHHHHHHHT-TTSCBCHHHHHHHHTCCHHHHHHHHHHCT-----TCEECTTSCEEE-SS
T ss_pred chHHHHHHHHHHh-cCCCCCHHHHHHHhCcCHHHHHHHHHhCC-----cEEECCCCCEEE-ec
Confidence 3456667888888 99999999999999999999999999985 699999999977 63
No 5
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=94.84 E-value=0.046 Score=42.49 Aligned_cols=44 Identities=9% Similarity=0.214 Sum_probs=41.2
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~ 125 (276)
+..++|+++++..|.-+..||||..+|++..++.++|.+|-.+.
T Consensus 19 d~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEg 62 (80)
T 2lnb_A 19 HLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKEL 62 (80)
T ss_dssp HHHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 46799999999999999999999999999999999999998764
No 6
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=93.97 E-value=0.14 Score=38.92 Aligned_cols=58 Identities=12% Similarity=0.184 Sum_probs=48.1
Q ss_pred chhhHHHHHHHHHcCCceehhhhhhhcCCCHH-HHHHHHHHHHhhcCCceEeecCccEEEEc
Q 023862 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLN-EAQKALQALAADTDGFLEVSDEGDVLYVF 141 (276)
Q Consensus 81 ~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~-~Ae~aL~aLAsD~~GhLeVSesGDIlYvF 141 (276)
++.+++|++.+++.| .+|+.|+|..-|++.. .+++.|..|..+ |-++-...|-.+|.-
T Consensus 10 ~~~~~~IL~~Lk~~g-~~ta~eiA~~Lgit~~~aVr~hL~~Le~e--GlV~~~~~gRP~w~L 68 (79)
T 1xmk_A 10 AEIKEKICDYLFNVS-DSSALNLAKNIGLTKARDINAVLIDMERQ--GDVYRQGTTPPIWHL 68 (79)
T ss_dssp HHHHHHHHHHHHHTC-CEEHHHHHHHHCGGGHHHHHHHHHHHHHT--TSEEEECSSSCEEEE
T ss_pred hhHHHHHHHHHHHcC-CcCHHHHHHHcCCCcHHHHHHHHHHHHHC--CCEEecCCCCCCeEe
Confidence 367899999999988 5899999999999999 999999999986 445545566666654
No 7
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=93.85 E-value=0.48 Score=36.98 Aligned_cols=85 Identities=14% Similarity=0.214 Sum_probs=60.3
Q ss_pred hhhHHHHHHHHHcCCc-eehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee----cCccEEEEc-CcchHHHhhhhhHH
Q 023862 82 DVRNRAMDAVDACNRR-VTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS----DEGDVLYVF-PNNYRAKLAAKSFR 155 (276)
Q Consensus 82 ~~~~rim~Ave~lg~r-vTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS----esGDIlYvF-P~nfRs~L~~Ks~r 155 (276)
..+.+|+.++.+.++. +|+.|+|.+.|++...+.+.|..|.... -++-. +.|-..|+| +..... -.+.++
T Consensus 26 ~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~G--lV~r~~~~~d~~~~~~~y~~~~~~~--~~~~i~ 101 (123)
T 3r0a_A 26 KADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKE--ILQRSQQNLDGGGYVYIYKIYSKNQ--IRNIIQ 101 (123)
T ss_dssp HHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTT--SEEEEEEECTTSCEEEEEEECCHHH--HHHHHH
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC--CEEeeCCccCCCcceEEEecCCHHH--HHHHHH
Confidence 4567899999988877 9999999999999999999999998764 44332 234466666 233332 124455
Q ss_pred HhHHHHHHHHhhhhh
Q 023862 156 LKVEPVIDKAKAAAE 170 (276)
Q Consensus 156 ~rl~~~~~k~w~v~~ 170 (276)
..+++|.+.+...+.
T Consensus 102 ~~~~~~~~~~~~~l~ 116 (123)
T 3r0a_A 102 KIVQSWADRLGQELK 116 (123)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 667777777765543
No 8
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=93.60 E-value=0.22 Score=37.45 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=46.9
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee-----cCccEEEE
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS-----DEGDVLYV 140 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS-----esGDIlYv 140 (276)
+.+.+|+..+-+.|..+|+.|+|...|++...+.++|..|.++. -++.. ..|-.+|.
T Consensus 18 ~~~l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~G--lV~~~~~~~~~~g~~v~~ 79 (110)
T 1q1h_A 18 DDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQG--FVSYRKTRDKDSGWFIYY 79 (110)
T ss_dssp STTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHT--SCEEEEEC---CCCCEEE
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC--CEEEEecccCCCceEEEE
Confidence 46778999887788789999999999999999999999999875 45554 56777773
No 9
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=92.82 E-value=0.12 Score=39.02 Aligned_cols=50 Identities=26% Similarity=0.367 Sum_probs=42.2
Q ss_pred CchhhHHHHHHHHHcC--CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023862 80 PADVRNRAMDAVDACN--RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (276)
Q Consensus 80 ~~~~~~rim~Ave~lg--~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeV 131 (276)
..+...+|++++++.+ .++|+.|+|.+.|++...+++.|..|..+ |.++.
T Consensus 8 ~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~--G~I~~ 59 (81)
T 1qbj_A 8 YQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKK--GKLQK 59 (81)
T ss_dssp HHHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred chHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEe
Confidence 3456788999999887 58999999999999999999999999865 44543
No 10
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=92.58 E-value=0.35 Score=42.55 Aligned_cols=69 Identities=20% Similarity=0.251 Sum_probs=54.2
Q ss_pred cccCCCC-chhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcCcch
Q 023862 74 VESDKLP-ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNY 145 (276)
Q Consensus 74 v~~~~l~-~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP~nf 145 (276)
|++..-. .....+|++.++.. +.||+.++|.+-|.+..-|+..|..+-. .|.|=+.++++-+|.||.-|
T Consensus 145 vqs~~~~~~~~~~~il~~~~~~-g~vt~~~la~~l~ws~~~a~e~L~~~e~--~G~l~~D~~~eg~~y~pn~f 214 (218)
T 3cuq_B 145 IELQSHKEEEMVASALETVSEK-GSLTSEEFAKLVGMSVLLAKERLLLAEK--MGHLCRDDSVEGLRFYPNLF 214 (218)
T ss_dssp EEETTCCGGGGHHHHHHHHHHT-SCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEESSSCEEEEECGG
T ss_pred EEcCCCchHHHHHHHHHHHHHC-CCcCHHHHHHHhCCCHHHHHHHHHHHHH--cCCEEEECCCCceEEehhhc
Confidence 5554332 35778888888865 5699999999999999999999998655 67777777777788899655
No 11
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=92.40 E-value=0.3 Score=34.97 Aligned_cols=60 Identities=10% Similarity=0.125 Sum_probs=47.2
Q ss_pred chhhHHHHHHHHHcC-Cceehhhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEeecCccEEEE
Q 023862 81 ADVRNRAMDAVDACN-RRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSDEGDVLYV 140 (276)
Q Consensus 81 ~~~~~rim~Ave~lg-~rvTvgDVAa~a-----GL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYv 140 (276)
...|..|++++.+.+ ..+|+.|++... +++...+-+.|..|.+..--+-...++|...|.
T Consensus 16 t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y~ 81 (83)
T 2fu4_A 16 TLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFE 81 (83)
T ss_dssp CHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEee
Confidence 456788999998876 789999999999 999999999999999875433222335666665
No 12
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=92.32 E-value=0.21 Score=36.05 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=38.8
Q ss_pred hHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023862 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (276)
Q Consensus 84 ~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeV 131 (276)
+.+|++.+.+. +.+|+.|+|...|++...+.+.|..|.++ |-++.
T Consensus 2 r~~Il~~L~~~-~~~s~~eLa~~lgvs~~tv~r~L~~L~~~--GlI~~ 46 (81)
T 2htj_A 2 KNEILEFLNRH-NGGKTAEIAEALAVTDYQARYYLLLLEKA--GMVQR 46 (81)
T ss_dssp HHHHHHHHHHS-CCCCHHHHHHHHTSCHHHHHHHHHHHHHH--TSEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEE
Confidence 57899999876 46999999999999999999999999876 55663
No 13
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=92.13 E-value=0.18 Score=37.34 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=40.4
Q ss_pred CchhhHHHHHHHHHcC--CceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023862 80 PADVRNRAMDAVDACN--RRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (276)
Q Consensus 80 ~~~~~~rim~Ave~lg--~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~ 125 (276)
..+...+|++++++.+ .++|+.|+|.+.|++...+++.|..|..+.
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G 59 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKG 59 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3456688999999988 589999999999999999999999998753
No 14
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=90.73 E-value=0.45 Score=42.81 Aligned_cols=70 Identities=19% Similarity=0.334 Sum_probs=52.3
Q ss_pred ccccCC--CCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeec--CccEEEEcCcchH
Q 023862 73 IVESDK--LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD--EGDVLYVFPNNYR 146 (276)
Q Consensus 73 ~v~~~~--l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSe--sGDIlYvFP~nfR 146 (276)
.|+|.. |.++. .+|++.++. .+.||+.+++...|.+..-|+.+|..|.++ |.|=|.+ +||-.|-||.-|-
T Consensus 144 ~VqSvp~el~~D~-~~vLela~~-~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~--GllwvD~q~~ge~~Yw~P~lf~ 217 (234)
T 3cuq_A 144 LIQSVPAELNMDH-TVVLQLAEK-NGYVTVSEIKASLKWETERARQVLEHLLKE--GLAWLDLQAPGEAHYWLPALFT 217 (234)
T ss_dssp EEECSCCCCCHHH-HHHHHHHTT-TSEECHHHHHHHHTCCHHHHHHHHHHHHHH--TSCEEESSSSSSCEEECTTSSC
T ss_pred EEEeCCCccchHH-HHHHHHHHh-cCcCcHHHHHHHhCCCHHHHHHHHHHHHhC--CCEEEeCCCCCcceeecchhhc
Confidence 344443 44443 447778875 467999999999999999999999998776 4555554 5899999996553
No 15
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=90.53 E-value=0.26 Score=44.31 Aligned_cols=60 Identities=17% Similarity=0.276 Sum_probs=47.9
Q ss_pred hHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecC--ccEEEEcCcchH
Q 023862 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE--GDVLYVFPNNYR 146 (276)
Q Consensus 84 ~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSes--GDIlYvFP~nfR 146 (276)
..+|++.++. .+.||+.+++...|.+..-|+.+|..|.++ |.|=|.++ ||..|-||.-|-
T Consensus 169 ~~~vLe~a~~-~g~vt~~~L~~~lgW~~~Ra~~~L~~l~~~--G~lwvD~q~~~e~~Yw~P~lf~ 230 (233)
T 1u5t_A 169 QTKILEICSI-LGYSSISLLKANLGWEAVRSKSALDEMVAN--GLLWIDYQGGAEALYWDPSWIT 230 (233)
T ss_dssp HHHHHHTTTT-TSCCBHHHHHHHHCCCSHHHHHHHHHHHHT--TSSEEECSSSSSCEEECGGGGG
T ss_pred HHHHHHHHHh-cCcCcHHHHHHHhCCCHHHHHHHHHHHHHC--CCEEEeCCCCCccceechhhhh
Confidence 4566777775 457999999999999999999999997665 66666653 588999996653
No 16
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=90.48 E-value=0.62 Score=33.44 Aligned_cols=59 Identities=14% Similarity=0.330 Sum_probs=46.2
Q ss_pred CchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCcc-EEEEc
Q 023862 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGD-VLYVF 141 (276)
Q Consensus 80 ~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGD-IlYvF 141 (276)
....+.+|+.++.+ ++..|+.|+|...|++...+.+.|..|.. .|-++...+|. ..|..
T Consensus 22 ~~~~~~~il~~l~~-~~~~s~~ela~~l~is~~tvs~~l~~L~~--~glv~~~~~~r~~~y~l 81 (99)
T 3cuo_A 22 SHPKRLLILCMLSG-SPGTSAGELTRITGLSASATSQHLARMRD--EGLIDSQRDAQRILYSI 81 (99)
T ss_dssp CSHHHHHHHHHHTT-CCSEEHHHHHHHHCCCHHHHHHHHHHHHH--TTSEEEEECSSCEEEEE
T ss_pred CChHHHHHHHHHHh-CCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEEecCCEEEEEE
Confidence 34677889998855 66899999999999999999999999963 56776666665 44444
No 17
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=90.24 E-value=0.57 Score=34.46 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=43.3
Q ss_pred CchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEc
Q 023862 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (276)
Q Consensus 80 ~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvF 141 (276)
....+.+|++.+ .+..|++|+|.+.|++...+.+.|..|... |-++... | .|..
T Consensus 29 ~~~~r~~Il~~L---~~~~~~~eLa~~l~is~~tv~~~L~~L~~~--Glv~~~~-g--~y~l 82 (96)
T 1y0u_A 29 TNPVRRKILRML---DKGRSEEEIMQTLSLSKKQLDYHLKVLEAG--FCIERVG-E--RWVV 82 (96)
T ss_dssp SCHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEET-T--EEEE
T ss_pred CCHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEEC-C--EEEE
Confidence 345677899998 355999999999999999999999999765 6676666 6 5554
No 18
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=90.16 E-value=0.36 Score=37.14 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=37.9
Q ss_pred chhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023862 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (276)
Q Consensus 81 ~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD 124 (276)
.++..+|++.+++.| +|+.|+|.+-|++...+++-|..|..+
T Consensus 16 ~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~aVr~~L~~Le~e 57 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEG--ATAAQLTRQLNMEKREVNKALYDLQRS 57 (82)
T ss_dssp HHHHHHHHHHHSSST--EEHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 357789999999766 999999999999999999999999876
No 19
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=90.03 E-value=3.3 Score=30.51 Aligned_cols=57 Identities=19% Similarity=0.239 Sum_probs=44.6
Q ss_pred CCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEE
Q 023862 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLY 139 (276)
Q Consensus 79 l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlY 139 (276)
|....+.+|+..+ .. +..|+.|+|...|++...+.+.|..|.. .|-++...+|.-.|
T Consensus 18 l~~~~r~~IL~~L-~~-~~~~~~ela~~l~is~~tv~~~l~~L~~--~gli~~~~~gr~~~ 74 (114)
T 2oqg_A 18 LSDETRWEILTEL-GR-ADQSASSLATRLPVSRQAIAKHLNALQA--CGLVESVKVGREIR 74 (114)
T ss_dssp TTCHHHHHHHHHH-HH-SCBCHHHHHHHSSSCHHHHHHHHHHHHH--TTSEEEEEETTEEE
T ss_pred hCChHHHHHHHHH-Hc-CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeeEEecCCEEE
Confidence 3446678899999 43 4599999999999999999999999965 46676666666443
No 20
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=89.94 E-value=0.57 Score=34.55 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=42.6
Q ss_pred CchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023862 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (276)
Q Consensus 80 ~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~ 125 (276)
.|-....+++.++..|+-+-+.++|++-|++.+++-..|..|+++.
T Consensus 8 ~~~~e~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KG 53 (59)
T 2xvc_A 8 HMITERELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKG 53 (59)
T ss_dssp CCCCHHHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTT
T ss_pred hhccHHHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 4666789999999999999999999999999999999999999874
No 21
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=89.38 E-value=0.59 Score=34.21 Aligned_cols=57 Identities=18% Similarity=0.353 Sum_probs=46.6
Q ss_pred CchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEE
Q 023862 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYV 140 (276)
Q Consensus 80 ~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYv 140 (276)
....|.+|+..+.+ +..|++|+|...|++...+.+.|..|.. .|-++...+|.-+|.
T Consensus 21 ~~~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~--~Glv~~~~~g~~~~y 77 (98)
T 3jth_A 21 ANERRLQILCMLHN--QELSVGELCAKLQLSQSALSQHLAWLRR--DGLVTTRKEAQTVYY 77 (98)
T ss_dssp CSHHHHHHHHHTTT--SCEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEECCTTCCEE
T ss_pred CCHHHHHHHHHHhc--CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEEEeCCEEEE
Confidence 34567789998876 6899999999999999999999999965 577887787764443
No 22
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=89.00 E-value=1 Score=33.70 Aligned_cols=59 Identities=15% Similarity=0.259 Sum_probs=48.0
Q ss_pred CCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEc
Q 023862 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (276)
Q Consensus 79 l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvF 141 (276)
|....+.+|+..+. .+..|++|+|...|++...+.+.|..|. ..|-++...+|.-+|..
T Consensus 23 l~~~~r~~IL~~L~--~~~~~~~ela~~l~is~stvs~~L~~L~--~~Glv~~~~~gr~~~y~ 81 (106)
T 1r1u_A 23 LGDYNRIRIMELLS--VSEASVGHISHQLNLSQSNVSHQLKLLK--SVHLVKAKRQGQSMIYS 81 (106)
T ss_dssp TCSHHHHHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEEETTEEEEE
T ss_pred hCCHHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEEeCCEEEEE
Confidence 44567889999997 3558999999999999999999999997 46778777778765554
No 23
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=88.87 E-value=2.7 Score=32.09 Aligned_cols=59 Identities=17% Similarity=0.280 Sum_probs=47.5
Q ss_pred CCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEc
Q 023862 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (276)
Q Consensus 79 l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvF 141 (276)
|....|-+|+..+. .+..|++|+|...|++...+-+-|..|.. .|-++...+|.-+|..
T Consensus 15 l~~~~R~~Il~~L~--~~~~~~~eLa~~l~is~~tvs~hL~~L~~--~GlV~~~~~gr~~~y~ 73 (118)
T 3f6o_A 15 LADPTRRAVLGRLS--RGPATVSELAKPFDMALPSFMKHIHFLED--SGWIRTHKQGRVRTCA 73 (118)
T ss_dssp HTSHHHHHHHHHHH--TCCEEHHHHHTTCCSCHHHHHHHHHHHHH--TTSEEEEEETTEEEEE
T ss_pred hCCHHHHHHHHHHH--hCCCCHHHHHHHhCcCHHHHHHHHHHHHH--CCCeEEEecCCEEEEE
Confidence 34567889999997 46789999999999999999999999964 5777777777644443
No 24
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=88.70 E-value=0.65 Score=35.80 Aligned_cols=42 Identities=10% Similarity=0.014 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~ 125 (276)
.-.+|++.+++. +++|+.|+|..-|+|...+++.|..|....
T Consensus 3 ~L~~Il~~L~~~-g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G 44 (87)
T 2k02_A 3 SLMEVRDMLALQ-GRMEAKQLSARLQTPQPLIDAMLERMEAMG 44 (87)
T ss_dssp CTHHHHHHHHHS-CSEEHHHHHHHTTCCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHc-CCCcHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 346789999775 689999999999999999999999998764
No 25
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=88.61 E-value=0.7 Score=34.62 Aligned_cols=42 Identities=12% Similarity=0.032 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~ 125 (276)
.-.+|++.+++. +++|+.|+|..-++|...+++.|..|.+..
T Consensus 3 ~L~~Il~~L~~~-g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G 44 (78)
T 1xn7_A 3 SLIQVRDLLALR-GRMEAAQISQTLNTPQPMINAMLQQLESMG 44 (78)
T ss_dssp CHHHHHHHHHHS-CSBCHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHc-CCCcHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 346789999775 589999999999999999999999999874
No 26
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=88.36 E-value=0.88 Score=34.51 Aligned_cols=57 Identities=26% Similarity=0.390 Sum_probs=46.7
Q ss_pred chhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEc
Q 023862 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (276)
Q Consensus 81 ~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvF 141 (276)
...|.+|+..+.+ +..|++|+|...|++...+.+.|..|.. .|-++...+|.-+|..
T Consensus 24 ~~~r~~IL~~L~~--~~~s~~eLa~~lgis~stvs~~L~~L~~--~GlV~~~~~gr~~~y~ 80 (108)
T 2kko_A 24 NGRRLQILDLLAQ--GERAVEAIATATGMNLTTASANLQALKS--GGLVEARREGTRQYYR 80 (108)
T ss_dssp TSTTHHHHHHHTT--CCEEHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHc--CCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEEEeCCEEEEE
Confidence 4567889998864 6789999999999999999999999976 4677777788765544
No 27
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=88.34 E-value=1.3 Score=36.15 Aligned_cols=59 Identities=15% Similarity=0.257 Sum_probs=48.7
Q ss_pred CCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEc
Q 023862 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (276)
Q Consensus 79 l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvF 141 (276)
|....|-+|+..+. .+..|++|+|...|++...+-+-|..|.. .|-++...+|.-+|..
T Consensus 55 L~~p~R~~IL~~L~--~~~~t~~eLa~~lgls~stvs~hL~~L~~--aGlV~~~~~Gr~~~y~ 113 (151)
T 3f6v_A 55 AAEPTRRRLVQLLT--SGEQTVNNLAAHFPASRSAISQHLRVLTE--AGLVTPRKDGRFRYYR 113 (151)
T ss_dssp HTSHHHHHHHHHGG--GCCEEHHHHHTTSSSCHHHHHHHHHHHHH--TTSEEEEEETTEEEEE
T ss_pred hCCHHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEEecCCEEEEE
Confidence 34577899999997 45699999999999999999999999965 4678877888766554
No 28
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=85.65 E-value=0.73 Score=35.70 Aligned_cols=38 Identities=13% Similarity=0.095 Sum_probs=33.0
Q ss_pred CchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHH
Q 023862 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQ 119 (276)
Q Consensus 80 ~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~ 119 (276)
+.+-+.+|++.+.+.+ +|+.|||..+|+|...+.+.|.
T Consensus 5 ~~~R~~~I~~~l~~~~--~ti~dlA~~~gVS~~TVsR~L~ 42 (93)
T 2l0k_A 5 IKERTIKIGKYIVETK--KTVRVIAKEFGVSKSTVHKDLT 42 (93)
T ss_dssp HHHHHHHHHHHHHHHC--CCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcC--CCHHHHHHHHCCCHHHHHHHHc
Confidence 4456678999999887 9999999999999999998874
No 29
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=85.39 E-value=2.2 Score=32.81 Aligned_cols=58 Identities=21% Similarity=0.222 Sum_probs=46.9
Q ss_pred CchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEc
Q 023862 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (276)
Q Consensus 80 ~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvF 141 (276)
....|.+|+..+.. +..|++|+|...|++...+.+.|..|.. .|-++...+|.-+|..
T Consensus 19 ~~~~r~~IL~~L~~--~~~~~~eLa~~lgis~stvs~~L~~L~~--~GlV~~~~~gr~~~y~ 76 (118)
T 2jsc_A 19 ADPTRCRILVALLD--GVCYPGQLAAHLGLTRSNVSNHLSCLRG--CGLVVATYEGRQVRYA 76 (118)
T ss_dssp SSHHHHHHHHHHHT--TCCSTTTHHHHHSSCHHHHHHHHHHHTT--TTSEEEEECSSSEEEE
T ss_pred CCHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCceEEEEECCEEEEE
Confidence 34567889999873 4589999999999999999999999976 6778877777655544
No 30
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=84.50 E-value=3.5 Score=32.13 Aligned_cols=57 Identities=18% Similarity=0.294 Sum_probs=46.4
Q ss_pred chhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEc
Q 023862 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (276)
Q Consensus 81 ~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvF 141 (276)
...+.+|+..+.+ +..|++|+|...|++...+-+.|..|-. .|-++...+|.-+|..
T Consensus 45 ~~~rl~IL~~L~~--~~~s~~ela~~lgis~stvs~~L~~Le~--~Glv~~~~~gr~~~y~ 101 (122)
T 1r1t_A 45 DPNRLRLLSLLAR--SELCVGDLAQAIGVSESAVSHQLRSLRN--LRLVSYRKQGRHVYYQ 101 (122)
T ss_dssp CHHHHHHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEEEeCCEEEEE
Confidence 3456788888863 5689999999999999999999999988 6777777778766655
No 31
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=84.38 E-value=2 Score=37.43 Aligned_cols=75 Identities=15% Similarity=0.109 Sum_probs=47.6
Q ss_pred HHcCCceehhhhhhhcCCCHHHHHHHHH--------------HHHhhcCC--------ceEeecCccEEEEcCcchHHHh
Q 023862 92 DACNRRVTIGDVAGKAGLKLNEAQKALQ--------------ALAADTDG--------FLEVSDEGDVLYVFPNNYRAKL 149 (276)
Q Consensus 92 e~lg~rvTvgDVAa~aGL~l~~Ae~aL~--------------aLAsD~~G--------hLeVSesGDIlYvFP~nfRs~L 149 (276)
.....++|+.|||.++|+|...+-++|+ +.|.+.|= .|.-..++.|..++|.....-+
T Consensus 4 ~~~~~~~Ti~diA~~aGVS~~TVSrvLn~~~~Vs~~tr~rV~~~a~~lgY~~pn~~a~~l~~~~s~~Igvi~~~~~~~~~ 83 (366)
T 3h5t_A 4 GRKQQYGTLASIAAKLGISRTTVSNAYNRPEQLSAELRQRILDTAEDMGYLGPDPVARSLRTRRAGAIGVLLTEDLTYAF 83 (366)
T ss_dssp ---CCTTHHHHHHHHHTSCHHHHHHHHHCGGGSCHHHHHHHHHHHHHTTC--------------CCEEEEEESSCTTHHH
T ss_pred CccCCCCCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHhhcCCCCEEEEEecCCccccc
Confidence 3456789999999999999999877774 34444432 2666678889999987655445
Q ss_pred hhhhHHHhHHHHHHHHh
Q 023862 150 AAKSFRLKVEPVIDKAK 166 (276)
Q Consensus 150 ~~Ks~r~rl~~~~~k~w 166 (276)
.+.++..-++.+-+.+.
T Consensus 84 ~~~~~~~~~~gi~~~a~ 100 (366)
T 3h5t_A 84 EDMASVDFLAGVAQAAG 100 (366)
T ss_dssp HSHHHHHHHHHHHHHSS
T ss_pred cCHHHHHHHHHHHHHHh
Confidence 66666665555555544
No 32
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=84.27 E-value=9 Score=27.12 Aligned_cols=58 Identities=17% Similarity=0.235 Sum_probs=44.4
Q ss_pred chhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeec--CccEEEEc
Q 023862 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD--EGDVLYVF 141 (276)
Q Consensus 81 ~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSe--sGDIlYvF 141 (276)
...+.+|+..+.+. +.+|+.|+|...|++...+.+.|..|.++ |-++... ++...|.+
T Consensus 19 ~~~~~~il~~l~~~-~~~s~~ela~~l~is~~tv~~~l~~L~~~--glv~~~~~~~~r~~~~~ 78 (109)
T 1sfx_A 19 KPSDVRIYSLLLER-GGMRVSEIARELDLSARFVRDRLKVLLKR--GFVRREIVEKGWVGYIY 78 (109)
T ss_dssp CHHHHHHHHHHHHH-CCBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEEEEESSSEEEEE
T ss_pred CHHHHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEEEeecCCceEEEE
Confidence 34567889999765 45999999999999999999999999776 4454433 45555554
No 33
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=84.15 E-value=7.3 Score=27.64 Aligned_cols=59 Identities=12% Similarity=0.102 Sum_probs=45.1
Q ss_pred CchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeec---CccEEEEc
Q 023862 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD---EGDVLYVF 141 (276)
Q Consensus 80 ~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSe---sGDIlYvF 141 (276)
....+-+|+..+.+.+ ..|+.|+|...|++...+-+.|..|..+ |-++... +|.-.|+.
T Consensus 14 ~~~~~~~iL~~L~~~~-~~~~~ela~~l~is~~tvs~~l~~L~~~--gli~~~~~~~~~r~~~~~ 75 (100)
T 1ub9_A 14 GNPVRLGIMIFLLPRR-KAPFSQIQKVLDLTPGNLDSHIRVLERN--GLVKTYKVIADRPRTVVE 75 (100)
T ss_dssp HSHHHHHHHHHHHHHS-EEEHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEEEEECSSSCEEEEE
T ss_pred CChHHHHHHHHHHhcC-CcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEEecCCCcceEEEE
Confidence 3456788899887654 6999999999999999999999999887 5565433 55544443
No 34
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=83.77 E-value=7.9 Score=29.69 Aligned_cols=62 Identities=19% Similarity=0.225 Sum_probs=44.8
Q ss_pred hHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcCcchHH
Q 023862 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRA 147 (276)
Q Consensus 84 ~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP~nfRs 147 (276)
...+...++..+..++..|++..+|++.+++++.|.+|.+... -+.+..+++..| +..++-.
T Consensus 4 ~~~l~~~L~~~~~~~~~~~l~~~~~l~~~~l~~~l~~l~~~~~-~~~~~~~~~~~~-~~~~~~~ 65 (135)
T 2v9v_A 4 EKILAQIIQEHREGLDWQEAATRASLSLEETRKLLQSMAAAGQ-VTLLRVENDLYA-ISTERYQ 65 (135)
T ss_dssp HHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTC-EEEEEETTEEEE-EEHHHHH
T ss_pred HHHHHHHHHHcCcCCCHHHHHHHhCCCHHHHHHHHHHHHhCCc-EEEEecCCCeEE-ecHHHHH
Confidence 4567788888888887799999999999999999999986544 555544344334 4344333
No 35
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=83.34 E-value=2.7 Score=33.32 Aligned_cols=63 Identities=16% Similarity=0.263 Sum_probs=47.7
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhc--CCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcCcchHHHh
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKA--GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKL 149 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~a--GL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP~nfRs~L 149 (276)
..+.+|++.+.+.| +.|++++|... |++...+.+-|..|..+ |-++....| +|.-...=+..|
T Consensus 13 ~~d~~IL~~L~~~g-~~s~~eLA~~l~~giS~~aVs~rL~~Le~~--GLV~~~~rg--~Y~LT~~G~~~l 77 (111)
T 3b73_A 13 IWDDRILEIIHEEG-NGSPKELEDRDEIRISKSSVSRRLKKLADH--DLLQPLANG--VYVITEEGEAYL 77 (111)
T ss_dssp HHHHHHHHHHHHHS-CBCHHHHHTSTTCCSCHHHHHHHHHHHHHT--TSEEECSTT--CEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHhcCCCHHHHHHHHHHHHHC--CCEEecCCc--eEEECchHHHHH
Confidence 34688999998765 89999999999 99999999999999875 455554455 666543333333
No 36
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=82.69 E-value=1.7 Score=32.08 Aligned_cols=59 Identities=17% Similarity=0.302 Sum_probs=46.5
Q ss_pred CCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCcc-EEEEc
Q 023862 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGD-VLYVF 141 (276)
Q Consensus 79 l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGD-IlYvF 141 (276)
|....|-+|+..+.+ +..|++|+|...|++...+.+.|..|.. .|-++...+|. +.|.-
T Consensus 20 l~~~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~--~Glv~~~~~g~~~~y~l 79 (102)
T 3pqk_A 20 LSHPVRLMLVCTLVE--GEFSVGELEQQIGIGQPTLSQQLGVLRE--SGIVETRRNIKQIFYRL 79 (102)
T ss_dssp HCSHHHHHHHHHHHT--CCBCHHHHHHHHTCCTTHHHHHHHHHHH--TTSEEEECSSSCCEEEE
T ss_pred cCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEEEeCCEEEEEE
Confidence 345678889999964 4599999999999999999999999964 46777777775 44544
No 37
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=82.54 E-value=3 Score=31.05 Aligned_cols=59 Identities=10% Similarity=0.178 Sum_probs=46.7
Q ss_pred CCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEc
Q 023862 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (276)
Q Consensus 79 l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvF 141 (276)
|....|-+|+..+...| ..|++|+|...|++...+-+-|..|... -++...+|.-+|..
T Consensus 24 L~~~~Rl~IL~~l~~~~-~~~~~ela~~l~is~stvs~hL~~L~~~---lv~~~~~gr~~~y~ 82 (99)
T 2zkz_A 24 MAHPMRLKIVNELYKHK-ALNVTQIIQILKLPQSTVSQHLCKMRGK---VLKRNRQGLEIYYS 82 (99)
T ss_dssp HCSHHHHHHHHHHHHHS-CEEHHHHHHHHTCCHHHHHHHHHHHBTT---TBEEEEETTEEEEE
T ss_pred hCCHHHHHHHHHHHHCC-CcCHHHHHHHHCcCHHHHHHHHHHHHHH---hhhheEeCcEEEEE
Confidence 34567788997766554 5999999999999999999999999765 66767777766554
No 38
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=82.37 E-value=12 Score=28.45 Aligned_cols=47 Identities=9% Similarity=0.158 Sum_probs=38.1
Q ss_pred HHHHHHHHH---cCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeec
Q 023862 85 NRAMDAVDA---CNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (276)
Q Consensus 85 ~rim~Ave~---lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSe 133 (276)
.++++++.. .++.+|+.|+|.+.|++...+.+.|..|..+ |-++...
T Consensus 16 ~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~--Gli~r~~ 65 (139)
T 2x4h_A 16 FSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEK--GLVKKKE 65 (139)
T ss_dssp HHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEET
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHC--CCEEecC
Confidence 445555544 4788999999999999999999999999887 6776655
No 39
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=82.23 E-value=6.3 Score=29.52 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcCc
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP~ 143 (276)
..+.+|+.++.+ +..|+.|+|...|++...+-+.|..|-. -|.++...+|.-+|..+.
T Consensus 32 ~~~~~il~~L~~--~~~s~~ela~~l~is~stvsr~l~~Le~--~Glv~~~~~~r~~~~~~~ 89 (119)
T 2lkp_A 32 PSRLMILTQLRN--GPLPVTDLAEAIGMEQSAVSHQLRVLRN--LGLVVGDRAGRSIVYSLY 89 (119)
T ss_dssp HHHHHHHHHHHH--CCCCHHHHHHHHSSCHHHHHHHHHHHHH--HCSEEEEEETTEEEEEES
T ss_pred HHHHHHHHHHHH--CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEEecCCEEEEEEc
Confidence 467788999887 4689999999999999999999999988 566666666665555533
No 40
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=81.48 E-value=5.7 Score=30.46 Aligned_cols=60 Identities=17% Similarity=0.305 Sum_probs=52.4
Q ss_pred CchhhHHHHHHHHHcCCceehhhhhhhcC-CCHHHHHHHHHHHHhhcCCceEeecC-ccEEEEc
Q 023862 80 PADVRNRAMDAVDACNRRVTIGDVAGKAG-LKLNEAQKALQALAADTDGFLEVSDE-GDVLYVF 141 (276)
Q Consensus 80 ~~~~~~rim~Ave~lg~rvTvgDVAa~aG-L~l~~Ae~aL~aLAsD~~GhLeVSes-GDIlYvF 141 (276)
+.++..+|++.+++....+|-.|++...+ ++.++--++++.|.+ .|.|++-.+ |.++|..
T Consensus 12 ~~~ie~~IL~l~~~~P~GItd~~L~~~~p~~~~~~r~~aIN~LL~--~gkiel~K~~~~liYr~ 73 (81)
T 2dk8_A 12 PVEIENRIIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLS--MGQLDLLRSNTGLLYRI 73 (81)
T ss_dssp HHHHHHHHHHHHHHCSSCEEHHHHHHHCTTSCHHHHHHHHHHHHH--HTSEEEEECSSSEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHH--cCCeEEEecCCeEEEEe
Confidence 67888999999999999999999999877 699999999999998 467777775 5688865
No 41
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=81.44 E-value=3.2 Score=29.66 Aligned_cols=47 Identities=13% Similarity=0.134 Sum_probs=36.4
Q ss_pred hHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 84 ~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
+-.++..+-+.++.+|+.|+|...|++...+.+.|..|.+. |-++..
T Consensus 23 ~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~--g~v~~~ 69 (109)
T 2d1h_A 23 DVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIEL--GLVVRT 69 (109)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCeEee
Confidence 44555555555678999999999999999999999999664 455544
No 42
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=81.43 E-value=6.3 Score=26.33 Aligned_cols=53 Identities=13% Similarity=0.224 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEeec-CccEEEE
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSD-EGDVLYV 140 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~a-----GL~l~~Ae~aL~aLAsD~~GhLeVSe-sGDIlYv 140 (276)
.|..++..+-+.+..+|+.|++... +++...+.+.|..+ |.+++.. +|...|.
T Consensus 5 ~R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l-----g~v~~~~~~~~~~Y~ 63 (64)
T 2p5k_A 5 QRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKEL-----HLVKVPTNNGSYKYS 63 (64)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH-----TCEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc-----CCEEEecCCCceeee
Confidence 4555555554557789999999999 99999999999944 3456654 4555554
No 43
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=81.38 E-value=5.7 Score=31.08 Aligned_cols=61 Identities=13% Similarity=0.142 Sum_probs=50.0
Q ss_pred chhhHHHHHHHHHcCCceehhhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEeecCccEEEEc
Q 023862 81 ADVRNRAMDAVDACNRRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (276)
Q Consensus 81 ~~~~~rim~Ave~lg~rvTvgDVAa~a-----GL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvF 141 (276)
...|..|++++.+.+.-+|+.||..+. ++++..+=+.|..|++..=-+=-...+|...|..
T Consensus 10 T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~~~~~~~y~~ 75 (131)
T 2o03_A 10 TRQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHTDTGESVYRR 75 (131)
T ss_dssp HHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEECTTSCEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEeCCCceEEEe
Confidence 356788999999988899999999988 8999999999999988765443334467788875
No 44
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=81.34 E-value=1.1 Score=35.25 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=28.9
Q ss_pred CCCCchhhHHHHHHH----HHcCC-ceehhhhhhhcCCCHH
Q 023862 77 DKLPADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLN 112 (276)
Q Consensus 77 ~~l~~~~~~rim~Av----e~lg~-rvTvgDVAa~aGL~l~ 112 (276)
.+++.+.+.+|++|+ .+.|+ .+|+.|||.++|++..
T Consensus 7 ~~~~~~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~ 47 (189)
T 3vp5_A 7 FSLSDEKRNRVYDACLNEFQTHSFHEAKIMHIVKALDIPRG 47 (189)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHCCcccccHHHHHHHhCCChH
Confidence 356778888887775 45687 8999999999999854
No 45
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=81.11 E-value=2.5 Score=33.42 Aligned_cols=43 Identities=7% Similarity=0.261 Sum_probs=37.3
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~ 125 (276)
+.+.+|++++.+. ++.|..|+|.+.|++...+.+.|..|.+..
T Consensus 7 ~~~~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 49 (151)
T 2cyy_A 7 EIDKKIIKILQND-GKAPLREISKITGLAESTIHERIRKLRESG 49 (151)
T ss_dssp HHHHHHHHHHHHC-TTCCHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3466899988775 589999999999999999999999998764
No 46
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=80.42 E-value=4.6 Score=28.66 Aligned_cols=56 Identities=20% Similarity=0.232 Sum_probs=44.9
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcC----CCHHHHHHHHHHHHhhcCCceEeecCccEEEE
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAG----LKLNEAQKALQALAADTDGFLEVSDEGDVLYV 140 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aG----L~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYv 140 (276)
..+..||+++.+ ++.+|+.|+|...+ ++...+-.-|..|..+ |.++...+|.-.+.
T Consensus 9 ~~e~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~k--Glv~r~~~gr~~~y 68 (82)
T 1p6r_A 9 DAELEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKK--GALNHHKEGRVFVY 68 (82)
T ss_dssp HHHHHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHT--TSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHC--CCeEEEecCCEEEE
Confidence 467889999988 56899999999986 7899999999999876 56776666764333
No 47
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=80.16 E-value=3.5 Score=31.40 Aligned_cols=52 Identities=12% Similarity=0.116 Sum_probs=43.0
Q ss_pred CchhhHHHHHHHHHcC--CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeec
Q 023862 80 PADVRNRAMDAVDACN--RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (276)
Q Consensus 80 ~~~~~~rim~Ave~lg--~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSe 133 (276)
.++.-+.+.+++..++ ...|.-++|.+-|++..++.+.|-.|..+ |-|.+..
T Consensus 10 ~~~~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kk--G~V~~~~ 63 (75)
T 1sfu_A 10 DAEIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKE--DTVKMVP 63 (75)
T ss_dssp SHHHHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEEEC
T ss_pred hHHHHHHHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHC--CCEecCC
Confidence 3588899999999985 44899999999999999999999999876 3444443
No 48
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=79.89 E-value=2.7 Score=35.65 Aligned_cols=61 Identities=20% Similarity=0.244 Sum_probs=46.5
Q ss_pred CCCCch-hhHHHHHHHHHcCCc----eehh-h-hhhhcCCCHHHHHHHHHHHHhhcCCceEeec--CccEEEE
Q 023862 77 DKLPAD-VRNRAMDAVDACNRR----VTIG-D-VAGKAGLKLNEAQKALQALAADTDGFLEVSD--EGDVLYV 140 (276)
Q Consensus 77 ~~l~~~-~~~rim~Ave~lg~r----vTvg-D-VAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSe--sGDIlYv 140 (276)
-+++++ ...+|++.++..++. +|.. + +|.+.|.+..-|+..|..+.++ |.|=+.+ +| +-|-
T Consensus 93 ~~~~~d~~~~~il~~~~~~~g~d~~~vt~~~~~la~~~~ws~~~a~e~L~~~e~~--G~l~~D~~~~G-~~y~ 162 (169)
T 1u5t_B 93 TSEKFDVVKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDE--GDLLIDKQLSG-IYYY 162 (169)
T ss_dssp ESSCSHHHHHHHHHHHHHSCSBCHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHH--TSEEEEECSSC-EEEE
T ss_pred eCCChhHHHHHHHHHHHhcCCCCcccccHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCEEEECCCCc-ceEE
Confidence 445554 447889999988778 9999 9 9999999999999999997765 4555554 56 4443
No 49
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=79.46 E-value=3.2 Score=32.59 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~ 125 (276)
+.+.+|++.+.+ +++.|..|+|.+.|++...+.+.|..|.++.
T Consensus 9 ~~d~~il~~L~~-~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 51 (151)
T 2dbb_A 9 RVDMQLVKILSE-NSRLTYRELADILNTTRQRIARRIDKLKKLG 51 (151)
T ss_dssp HHHHHHHHHHHH-CTTCCHHHHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 345688998876 5789999999999999999999999997763
No 50
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=79.45 E-value=3 Score=32.78 Aligned_cols=43 Identities=23% Similarity=0.379 Sum_probs=36.8
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~ 125 (276)
+.+.+|++++.+. ++.|..|+|.+.|++...+.+.|..|.+..
T Consensus 7 ~~~~~iL~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 49 (150)
T 2w25_A 7 DIDRILVRELAAD-GRATLSELATRAGLSVSAVQSRVRRLESRG 49 (150)
T ss_dssp HHHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3466899999754 689999999999999999999999997653
No 51
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=78.93 E-value=2.3 Score=33.25 Aligned_cols=43 Identities=12% Similarity=0.252 Sum_probs=37.3
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~ 125 (276)
+.+.+|++.+.+ +++.|..|+|.+.|++...+.+.|..|.+..
T Consensus 3 ~~~~~il~~L~~-~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G 45 (150)
T 2pn6_A 3 EIDLRILKILQY-NAKYSLDEIAREIRIPKATLSYRIKKLEKDG 45 (150)
T ss_dssp HHHHHHHHHHTT-CTTSCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 356789998865 4589999999999999999999999998764
No 52
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=78.88 E-value=3.2 Score=32.02 Aligned_cols=56 Identities=20% Similarity=0.332 Sum_probs=41.7
Q ss_pred chhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEE
Q 023862 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLY 139 (276)
Q Consensus 81 ~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlY 139 (276)
...|.+|+..+.+. +..|++|+|...|++...+-+-|..|. ..|-++...+|.-+|
T Consensus 41 ~~~rl~IL~~L~~~-~~~s~~eLa~~l~is~stvs~~L~~L~--~~Glv~~~~~gr~~~ 96 (122)
T 1u2w_A 41 DENRAKITYALCQD-EELCVCDIANILGVTIANASHHLRTLY--KQGVVNFRKEGKLAL 96 (122)
T ss_dssp SHHHHHHHHHHHHS-SCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEC----CCE
T ss_pred CHHHHHHHHHHHHC-CCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEEECCEEE
Confidence 34566888888764 568999999999999999999999998 357777776775333
No 53
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=78.48 E-value=3.1 Score=34.24 Aligned_cols=43 Identities=7% Similarity=0.261 Sum_probs=37.4
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~ 125 (276)
+.+.+|++++.+. ++.|..|+|.+.|++...+.+.|..|-++.
T Consensus 27 ~~d~~IL~~L~~~-~~~s~~eLA~~lglS~~tv~~rl~~L~~~G 69 (171)
T 2e1c_A 27 EIDKKIIKILQND-GKAPLREISKITGLAESTIHERIRKLRESG 69 (171)
T ss_dssp HHHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3566899999775 589999999999999999999999997764
No 54
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=77.94 E-value=3.6 Score=32.26 Aligned_cols=43 Identities=9% Similarity=0.181 Sum_probs=36.8
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~ 125 (276)
+.+.+|++.+.+. ++.|..|+|.+.|++...+.+.|..|.+..
T Consensus 5 ~~d~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 47 (144)
T 2cfx_A 5 QIDLNIIEELKKD-SRLSMRELGRKIKLSPPSVTERVRQLESFG 47 (144)
T ss_dssp HHHHHHHHHHHHC-SCCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3456899998764 679999999999999999999999997653
No 55
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=77.55 E-value=3.6 Score=32.43 Aligned_cols=43 Identities=9% Similarity=0.204 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~ 125 (276)
+.+.+|++++.+. ++.|..|+|.+.|++...+.+.|..|.+..
T Consensus 8 ~~d~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 50 (152)
T 2cg4_A 8 NLDRGILEALMGN-ARTAYAELAKQFGVSPETIHVRVEKMKQAG 50 (152)
T ss_dssp HHHHHHHHHHHHC-TTSCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 3456899988765 689999999999999999999999997764
No 56
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=77.17 E-value=3.6 Score=31.61 Aligned_cols=42 Identities=17% Similarity=0.276 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~ 125 (276)
.+.+|++++.+. ++.|..|+|.+.|++...+.+.|..|.++.
T Consensus 5 ~~~~il~~L~~~-~~~~~~ela~~lg~s~~tv~~~l~~L~~~G 46 (141)
T 1i1g_A 5 RDKIILEILEKD-ARTPFTEIAKKLGISETAVRKRVKALEEKG 46 (141)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 466889988754 578999999999999999999999998764
No 57
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=76.03 E-value=21 Score=26.39 Aligned_cols=60 Identities=15% Similarity=0.208 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee---cCccEEEEcCcc
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS---DEGDVLYVFPNN 144 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS---esGDIlYvFP~n 144 (276)
...+++..+....+.+|+.|+|...|++...+-+.|..|... |-++.. ++....|..+.+
T Consensus 27 ~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~~--G~v~r~~~~~d~r~~~~~~~~ 89 (152)
T 1ku9_A 27 SVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEEL--GFVRKVWIKGERKNYYEAVDG 89 (152)
T ss_dssp HHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEECCTTCSSCEEEECCH
T ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEEecCCCceEEEeecch
Confidence 456788888534577999999999999999999999999875 566654 455677887754
No 58
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=75.91 E-value=2 Score=32.60 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHH----cCC-ceehhhhhhhcCCCHH
Q 023862 82 DVRNRAMDAVDA----CNR-RVTIGDVAGKAGLKLN 112 (276)
Q Consensus 82 ~~~~rim~Ave~----lg~-rvTvgDVAa~aGL~l~ 112 (276)
..+.+|++|+.+ .|+ .+|+.|||.++|++..
T Consensus 12 ~tr~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~ 47 (177)
T 3kkc_A 12 KTKVAIYNAFISLLQENDYSKITVQDVIGLANVGRS 47 (177)
T ss_dssp HHHHHHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHHHHhCChhHhhHHHHHHHhCCcHh
Confidence 455667666654 587 8999999999998754
No 59
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=75.76 E-value=1.4 Score=34.36 Aligned_cols=30 Identities=10% Similarity=0.133 Sum_probs=23.0
Q ss_pred hhhHHHHHHHH----HcCC-ceehhhhhhhcCCCH
Q 023862 82 DVRNRAMDAVD----ACNR-RVTIGDVAGKAGLKL 111 (276)
Q Consensus 82 ~~~~rim~Ave----~lg~-rvTvgDVAa~aGL~l 111 (276)
..|++|++|.. +.|| .+|+.|||.++|++.
T Consensus 7 ~tRe~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~ 41 (178)
T 4hku_A 7 LSQEIILNMAEKIIYEKGMEKTTLYDIASNLNVTH 41 (178)
T ss_dssp CCHHHHHHHHHHHHHHHCGGGCCHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHHHHHHhCcccccHHHHHHHhCcCH
Confidence 35677776654 5587 689999999999764
No 60
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=75.57 E-value=4.5 Score=32.25 Aligned_cols=43 Identities=12% Similarity=0.194 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~ 125 (276)
+.+.+|++++.+. ++.|..|+|.+.|++...+.+.|..|-...
T Consensus 10 ~~~~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 52 (162)
T 2p5v_A 10 KTDIKILQVLQEN-GRLTNVELSERVALSPSPCLRRLKQLEDAG 52 (162)
T ss_dssp HHHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3456899988765 569999999999999999999999997653
No 61
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=75.41 E-value=8.1 Score=30.79 Aligned_cols=62 Identities=8% Similarity=0.028 Sum_probs=49.7
Q ss_pred CchhhHHHHHHHHHcCCceehhhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEeecCccEEEEc
Q 023862 80 PADVRNRAMDAVDACNRRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (276)
Q Consensus 80 ~~~~~~rim~Ave~lg~rvTvgDVAa~a-----GL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvF 141 (276)
....|..|++++.+.+.-+|+.||.... ++++..+=+.|..|.+..=-+=-...+|...|..
T Consensus 20 ~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 86 (145)
T 2fe3_A 20 ITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTYGDASSRFDF 86 (145)
T ss_dssp CCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECCTTSCCEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEeeCCCceEEEC
Confidence 3467888999999988899999999888 8999999999999998754433333456778875
No 62
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=75.37 E-value=4.3 Score=33.31 Aligned_cols=43 Identities=12% Similarity=0.164 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~ 125 (276)
+.+.+|++++.+. ++.|..|+|.+.|++...+.+.|..|.++.
T Consensus 17 ~~d~~IL~~L~~~-~~~s~~eLA~~lglS~~tv~~~l~~L~~~G 59 (171)
T 2ia0_A 17 DLDRNILRLLKKD-ARLTISELSEQLKKPESTIHFRIKKLQERG 59 (171)
T ss_dssp HHHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4556899999775 589999999999999999999999997654
No 63
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=75.02 E-value=17 Score=30.96 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=42.4
Q ss_pred HHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEc
Q 023862 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (276)
Q Consensus 85 ~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvF 141 (276)
-+|++++.+.+...|+.|+|.+.|++...+-+-|..|.+ .|.++-.++| -|.-
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~--~G~v~~~~~~--~Y~l 63 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEE--KGFVLRKKDK--RYVP 63 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEECTTS--CEEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCcEEECCCC--cEEE
Confidence 467888887777899999999999999999999999987 4667665444 3554
No 64
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=74.95 E-value=15 Score=27.28 Aligned_cols=47 Identities=9% Similarity=0.125 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
.+-.|+..+...+ .+|+.|+|...|++...+-+.|..|..+ |-++..
T Consensus 32 ~~~~iL~~l~~~~-~~~~~ela~~l~is~~~vs~~l~~L~~~--gli~~~ 78 (142)
T 3bdd_A 32 TRYSILQTLLKDA-PLHQLALQERLQIDRAAVTRHLKLLEES--GYIIRK 78 (142)
T ss_dssp HHHHHHHHHHHHC-SBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHhCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEec
Confidence 4567888888765 6999999999999999999999999887 555544
No 65
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=74.92 E-value=3.4 Score=34.26 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023862 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (276)
Q Consensus 85 ~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeV 131 (276)
.-|.+.+++.|+-.|+.|+|...|++...+.+-|.+|..+ |.|+.
T Consensus 12 ~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~--G~i~~ 56 (196)
T 3k2z_A 12 LFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKK--GYIER 56 (196)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHC--CCEEe
Confidence 3344555678999999999999999999999999999765 44443
No 66
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=74.89 E-value=2 Score=33.81 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=24.4
Q ss_pred hhHHHHHH----HHHcCCceehhhhhhhcCCCHHHH
Q 023862 83 VRNRAMDA----VDACNRRVTIGDVAGKAGLKLNEA 114 (276)
Q Consensus 83 ~~~rim~A----ve~lg~rvTvgDVAa~aGL~l~~A 114 (276)
.+.+|++| +.+.|+.+|+.|||.++|++....
T Consensus 14 ~r~~Il~aA~~lf~~~G~~~t~~~IA~~agvs~~tl 49 (196)
T 2qwt_A 14 NRARVLEVAYDTFAAEGLGVPMDEIARRAGVGAGTV 49 (196)
T ss_dssp HHHHHHHHHHHHHHHTCTTSCHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHH
Confidence 45566554 556799999999999999887543
No 67
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=74.73 E-value=3.6 Score=35.07 Aligned_cols=40 Identities=13% Similarity=0.107 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHh
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAA 123 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAs 123 (276)
-+..|++.+++ .+.+|+.|+|..-|.|....++.|.+|..
T Consensus 13 R~~~i~~~l~~-~~~~~~~~la~~~~vs~~TiRrDl~eL~~ 52 (190)
T 4a0z_A 13 RREAIRQQIDS-NPFITDHELSDLFQVSIQTIRLDRTYLNI 52 (190)
T ss_dssp HHHHHHHHHHH-CTTCCHHHHHHHHTSCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHH-CCCEeHHHHHHHHCCCHHHHHHHHHHhcC
Confidence 44566777776 56899999999999999999999999854
No 68
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=74.42 E-value=23 Score=26.06 Aligned_cols=46 Identities=7% Similarity=0.133 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeV 131 (276)
.+-.|+..+.+.+ .+|+.|+|...|++...+-+.|..|.++ |-++.
T Consensus 39 ~~~~iL~~l~~~~-~~t~~ela~~l~~~~~tvs~~l~~L~~~--glv~r 84 (140)
T 2nnn_A 39 TQWAALVRLGETG-PCPQNQLGRLTAMDAATIKGVVERLDKR--GLIQR 84 (140)
T ss_dssp HHHHHHHHHHHHS-SBCHHHHHHHTTCCHHHHHHHHHHHHHT--TCEEE
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEe
Confidence 4577899998776 7999999999999999999999999987 44544
No 69
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=74.31 E-value=11 Score=30.02 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=50.1
Q ss_pred chhhHHHHHHHHHcCCceehhhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEeecCccEEEEc
Q 023862 81 ADVRNRAMDAVDACNRRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (276)
Q Consensus 81 ~~~~~rim~Ave~lg~rvTvgDVAa~a-----GL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvF 141 (276)
...|..|++++.+.+.-+|+.||..+. ++++..+=+.|..|++..=-+=-..++|...|..
T Consensus 13 T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~~ 78 (139)
T 3mwm_A 13 TRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAEGESVYRR 78 (139)
T ss_dssp HHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEEEC
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEEEE
Confidence 346788999999998899999998776 7999999999999998875543334577888886
No 70
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=74.12 E-value=2 Score=33.05 Aligned_cols=32 Identities=9% Similarity=0.211 Sum_probs=23.8
Q ss_pred hhhHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023862 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
+.|.+|++| +.+.|| .+|+.|||.++|++...
T Consensus 2 ~tr~~Il~aA~~lf~~~Gy~~~s~~~Ia~~agvskgt 38 (179)
T 2eh3_A 2 GTKERILEVSKELFFEKGYQGTSVEEIVKRANLSKGA 38 (179)
T ss_dssp CHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHH
T ss_pred cHHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCCcHH
Confidence 455666555 556787 69999999999987643
No 71
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=73.73 E-value=3.9 Score=32.94 Aligned_cols=43 Identities=16% Similarity=0.370 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~ 125 (276)
+...+|++++.+ ++++|..|+|.+.|+|...+.+-|..|-++.
T Consensus 3 ~~d~~il~~L~~-~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 3 RLDRKILRILQE-DSTLAVADLAKKVGLSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp HHHHHHHHHHTT-CSCSCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 345688888865 5688999999999999999999999998775
No 72
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=73.65 E-value=2.9 Score=36.78 Aligned_cols=52 Identities=21% Similarity=0.265 Sum_probs=41.8
Q ss_pred HHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEc
Q 023862 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (276)
Q Consensus 86 rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvF 141 (276)
+|++++.+.+..+|+.|+|.++||+...+-+-|..|.+. |.|+-+++| -|.-
T Consensus 34 ~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~--G~v~~~~~~--~Y~L 85 (275)
T 3mq0_A 34 RILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTEL--DLLARSADG--TLRI 85 (275)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHT--TSEEECTTS--EEEE
T ss_pred HHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEECCCC--cEEe
Confidence 578888888888999999999999999999999999865 677766655 4766
No 73
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=73.45 E-value=2.4 Score=32.16 Aligned_cols=33 Identities=9% Similarity=0.148 Sum_probs=24.4
Q ss_pred chhhHHHHHHH----HHcCC-ceehhhhhhhcCCCHHH
Q 023862 81 ADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 81 ~~~~~rim~Av----e~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
.+.+.+|++|. .+.|+ .+|+.|||.++|++...
T Consensus 8 ~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t 45 (195)
T 3ppb_A 8 RTKKQAILETALQLFVSQGFHGTSTATIAREAGVATGT 45 (195)
T ss_dssp CCHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHH
T ss_pred hhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhH
Confidence 34566666655 45585 79999999999988654
No 74
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=73.42 E-value=6.7 Score=29.22 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHcCC-ceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023862 83 VRNRAMDAVDACNR-RVTIGDVAGKAGLKLNEAQKALQALAADT 125 (276)
Q Consensus 83 ~~~rim~Ave~lg~-rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~ 125 (276)
.+-.++..+.+.++ .+|+.|+|...|++...+-+.|..|..+.
T Consensus 35 ~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~G 78 (141)
T 3bro_A 35 TQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKK 78 (141)
T ss_dssp HHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCC
Confidence 46778999988875 79999999999999999999999999874
No 75
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=72.65 E-value=8.4 Score=34.54 Aligned_cols=68 Identities=16% Similarity=0.159 Sum_probs=53.2
Q ss_pred cccCCCCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee-cCccEEEEcCc
Q 023862 74 VESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS-DEGDVLYVFPN 143 (276)
Q Consensus 74 v~~~~l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS-esGDIlYvFP~ 143 (276)
+.|.-|-.+++-.|.+.+.+.++.+|+.|+|+++|++..-+++=|+.|++ -|-|++. +.|+-.|.=.+
T Consensus 20 ~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~~~~~l~rlLr~L~~--~gll~~~~~~~~~~y~~t~ 88 (353)
T 4a6d_A 20 MVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRASAHGTELLLDICVS--LKLLKVETRGGKAFYRNTE 88 (353)
T ss_dssp HHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCcCHHHHHHHHHHHHH--CCCEEEeccCccceeeCCH
Confidence 34444556777888999988888899999999999999999988888886 4667654 56677787544
No 76
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=72.56 E-value=4.8 Score=30.34 Aligned_cols=42 Identities=12% Similarity=0.234 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~ 125 (276)
..+-.|+..+...+ +|++|+|...|++...+-+.|..|..+.
T Consensus 38 ~~~~~iL~~l~~~~--~t~~eLa~~l~~s~~tvs~~l~~L~~~G 79 (146)
T 3tgn_A 38 NTQEHILMLLSEES--LTNSELARRLNVSQAAVTKAIKSLVKEG 79 (146)
T ss_dssp HHHHHHHHHHTTCC--CCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCC--CCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 35678899998877 9999999999999999999999998764
No 77
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=72.30 E-value=2.3 Score=33.09 Aligned_cols=34 Identities=26% Similarity=0.523 Sum_probs=26.5
Q ss_pred CCCchhhHHHHHHH----HHcCCc-eehhhhhhhcCCCH
Q 023862 78 KLPADVRNRAMDAV----DACNRR-VTIGDVAGKAGLKL 111 (276)
Q Consensus 78 ~l~~~~~~rim~Av----e~lg~r-vTvgDVAa~aGL~l 111 (276)
+.+.+.+.+|++|. .+.|+. +|+.|||.++|++.
T Consensus 9 ~~~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~ 47 (217)
T 3nrg_A 9 NLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAK 47 (217)
T ss_dssp TSCHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCT
T ss_pred CChHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcH
Confidence 45667777887664 567886 99999999999764
No 78
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=72.13 E-value=2.4 Score=36.78 Aligned_cols=53 Identities=13% Similarity=0.288 Sum_probs=41.7
Q ss_pred HHHHHHHHHc---CCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEc
Q 023862 85 NRAMDAVDAC---NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (276)
Q Consensus 85 ~rim~Ave~l---g~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvF 141 (276)
.|.++.++-+ +..+|+.|+|.++|++...+-+-|..|.+ .|.|+-.++| -|.-
T Consensus 23 ~r~l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~--~G~v~~~~~~--~Y~l 78 (260)
T 2o0y_A 23 TRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCA--RSVLTSRADG--SYSL 78 (260)
T ss_dssp HHHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHH--TTSEEECTTS--CEEE
T ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEECCCC--eEEe
Confidence 3455555543 46899999999999999999999999987 5778777766 6766
No 79
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=71.92 E-value=5 Score=34.40 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=41.5
Q ss_pred HHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEc
Q 023862 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (276)
Q Consensus 86 rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvF 141 (276)
+|++++.+.+...|+.|+|.+.|++...+-+-|..|... |.|+-.+++. -|.-
T Consensus 10 ~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~~--G~v~~~~~~~-~Y~l 62 (241)
T 2xrn_A 10 SIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEE--FLVEALGPAG-GFRL 62 (241)
T ss_dssp HHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHTT--TSEEECGGGC-EEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEeCCCC-eEEE
Confidence 567777777778999999999999999999999999764 6676654322 3554
No 80
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=71.90 E-value=2.9 Score=32.48 Aligned_cols=31 Identities=13% Similarity=0.226 Sum_probs=24.3
Q ss_pred hHHHHH----HHHHcCCceehhhhhhhcCCCHHHH
Q 023862 84 RNRAMD----AVDACNRRVTIGDVAGKAGLKLNEA 114 (276)
Q Consensus 84 ~~rim~----Ave~lg~rvTvgDVAa~aGL~l~~A 114 (276)
+.+|++ .+.+.|+.+|+.|||.++|++....
T Consensus 17 r~~Il~aA~~lf~~~G~~~s~~~IA~~agvs~~tl 51 (194)
T 2q24_A 17 RDKILAAAVRVFSEEGLDAHLERIAREAGVGSGTL 51 (194)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHhcCcCCCHHHHHHHhCCChHHH
Confidence 455554 5567899999999999999987653
No 81
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=71.62 E-value=9.5 Score=28.55 Aligned_cols=47 Identities=11% Similarity=0.073 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
..+-.|+..+. ++.+|+.|+|...|++...+-+.|..|.++ |-++..
T Consensus 37 ~~~~~iL~~l~--~~~~~~~ela~~l~~s~~tvs~~l~~Le~~--glv~r~ 83 (146)
T 2gxg_A 37 YLDFLVLRATS--DGPKTMAYLANRYFVTQSAITASVDKLEEM--GLVVRV 83 (146)
T ss_dssp HHHHHHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHh--cCCcCHHHHHHHhCCCchhHHHHHHHHHHC--CCEEee
Confidence 34677888887 778999999999999999999999999988 555543
No 82
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=71.22 E-value=7.7 Score=29.48 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHcC-CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceE
Q 023862 83 VRNRAMDAVDACN-RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLE 130 (276)
Q Consensus 83 ~~~rim~Ave~lg-~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLe 130 (276)
.+..|++.++..| ..+|..|+|.+++|+..++-+.|..|-. -|-++
T Consensus 21 ~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~--kglIk 67 (91)
T 2dk5_A 21 QEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES--KKLIK 67 (91)
T ss_dssp SHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHH--TTSEE
T ss_pred HHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEE
Confidence 5678999999865 4899999999999999999999999966 45555
No 83
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=71.15 E-value=6.5 Score=30.20 Aligned_cols=45 Identities=11% Similarity=0.148 Sum_probs=35.5
Q ss_pred HHHHHHHHc--CCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 86 RAMDAVDAC--NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 86 rim~Ave~l--g~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
++|..+.+. +..+|+.|+|.+.|++...+++.|..|... |-++..
T Consensus 13 ~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~--Glv~~~ 59 (129)
T 2y75_A 13 TIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNA--GLVKSI 59 (129)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHT--TSEEEC
T ss_pred HHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHC--CceEec
Confidence 456666554 577999999999999999999999999874 445544
No 84
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=71.12 E-value=11 Score=28.36 Aligned_cols=46 Identities=11% Similarity=0.107 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeV 131 (276)
.+..|+..+...+ .+|+.|+|...|++...+-+.|..|..+ |-++.
T Consensus 41 ~~~~iL~~l~~~~-~~~~~~la~~l~~~~~tvs~~l~~L~~~--glv~r 86 (147)
T 1z91_A 41 PQYLALLLLWEHE-TLTVKKMGEQLYLDSGTLTPMLKRMEQQ--GLITR 86 (147)
T ss_dssp HHHHHHHHHHHHS-EEEHHHHHHTTTCCHHHHHHHHHHHHHH--TSEEC
T ss_pred HHHHHHHHHHHCC-CCCHHHHHHHHCCCcCcHHHHHHHHHHC--CCEEe
Confidence 5678899998876 8999999999999999999999999988 55544
No 85
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=70.97 E-value=2.7 Score=32.59 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=24.0
Q ss_pred hhHHHHHH----HHHcCCc-eehhhhhhhcCCCHHHH
Q 023862 83 VRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (276)
Q Consensus 83 ~~~rim~A----ve~lg~r-vTvgDVAa~aGL~l~~A 114 (276)
.|.+|++| +.+.|+. +|+.|||.++|++....
T Consensus 4 tr~~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~t~ 40 (190)
T 3vpr_A 4 TRDRILEEAAKLFTEKGYEATSVQDLAQALGLSKAAL 40 (190)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHH
T ss_pred hHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHH
Confidence 45555554 6778875 89999999999987543
No 86
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=70.71 E-value=3.4 Score=32.58 Aligned_cols=35 Identities=14% Similarity=0.184 Sum_probs=26.3
Q ss_pred CCchhhHHHHHHH----HHcCC-ceehhhhhhhcCCCHHH
Q 023862 79 LPADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 79 l~~~~~~rim~Av----e~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
...+.|.+|++|. .+.|| .+|+.|||.++|++...
T Consensus 6 ~~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~t 45 (203)
T 3cdl_A 6 LTDQKRESIVQAAIAEFGDRGFEITSMDRIAARAEVSKRT 45 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHH
T ss_pred cchhHHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHH
Confidence 3445677776664 56787 69999999999987654
No 87
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=70.65 E-value=3 Score=32.84 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=25.5
Q ss_pred chhhHHHHHHH----HHcCC-ceehhhhhhhcCCCHHH
Q 023862 81 ADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 81 ~~~~~rim~Av----e~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
++.|.+|++|. .+.|+ .+|+.|||.++|++...
T Consensus 9 ~~tR~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t 46 (210)
T 3vib_A 9 LKTKEHLMLAALETFYRKGIARTSLNEIAQAAGVTRDA 46 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHH
Confidence 45677787664 56787 68999999999988654
No 88
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=70.54 E-value=9.3 Score=25.63 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEc
Q 023862 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (276)
Q Consensus 86 rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvF 141 (276)
++..++++.| |+.++|.+.|++-...-+-+. ...+-.|++++.|+.+|.-
T Consensus 5 ~l~~~~~~~g---s~~~~A~~lgis~~~vs~~~~---~~~~~~l~~t~~G~~~~~~ 54 (67)
T 2pij_A 5 PLSKYLEEHG---TQSALAAALGVNQSAISQMVR---AGRSIEITLYEDGRVEANE 54 (67)
T ss_dssp EHHHHHHHTC---CHHHHHHHHTSCHHHHHHHHH---TTCCEEEEECTTSCEEEEE
T ss_pred HHHHHHHHcC---CHHHHHHHHCcCHHHHHHHHc---CCCCCCeEEccCceEehHh
Confidence 4666777777 999999999999877766552 2223344449999999865
No 89
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=69.63 E-value=3 Score=32.22 Aligned_cols=31 Identities=13% Similarity=0.216 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHcCC-ceehhhhhhhcCCCHHH
Q 023862 83 VRNRAMDAVDACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 83 ~~~rim~Ave~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
.-...++.+.+.|+ .+|+.|||.++|++...
T Consensus 12 Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t 43 (192)
T 2zcm_A 12 IIDNAITLFSEKGYDGTTLDDISKSVNIKKAS 43 (192)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHcCcccCCHHHHHHHhCCChHH
Confidence 33444566777897 69999999999988654
No 90
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=69.58 E-value=8 Score=29.51 Aligned_cols=48 Identities=15% Similarity=0.087 Sum_probs=41.2
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeV 131 (276)
..+-.++..+...+..+|+.|+|...|++...+-+.|..|..+ |-++-
T Consensus 39 ~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~--Glv~r 86 (150)
T 3fm5_A 39 VRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEER--GLVVR 86 (150)
T ss_dssp HHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTT--TSEEC
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHC--CCEEe
Confidence 3567889999888878999999999999999999999999876 55544
No 91
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=69.43 E-value=9.1 Score=31.56 Aligned_cols=49 Identities=6% Similarity=0.020 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
-+.+|++.+.+.+..+|+.|+|.+.|+|...+++.|..|-+ .|-.++.+
T Consensus 22 R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~-~G~~I~~~ 70 (187)
T 1j5y_A 22 RLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRS-LGYNIVAT 70 (187)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHH-HTCCCEEE
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH-CCCeEEEE
Confidence 34567888887777799999999999999999999999976 33335543
No 92
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=69.27 E-value=5.6 Score=31.16 Aligned_cols=44 Identities=14% Similarity=0.193 Sum_probs=39.3
Q ss_pred hHHHHHHHHHcCCceehhhhhh-hcCCCHHHHHHHHHHHHhhcCCceE
Q 023862 84 RNRAMDAVDACNRRVTIGDVAG-KAGLKLNEAQKALQALAADTDGFLE 130 (276)
Q Consensus 84 ~~rim~Ave~lg~rvTvgDVAa-~aGL~l~~Ae~aL~aLAsD~~GhLe 130 (276)
+=.|+-.+.+.+ ..|++|+|. ..+++....-+.|..|..+ |-++
T Consensus 18 QfsiL~~L~~~~-~~t~~~Lae~~l~~drstvsrnl~~L~r~--GlVe 62 (95)
T 1bja_A 18 TATILITIAKKD-FITAAEVREVHPDLGNAVVNSNIGVLIKK--GLVE 62 (95)
T ss_dssp HHHHHHHHHHST-TBCHHHHHHTCTTSCHHHHHHHHHHHHTT--TSEE
T ss_pred HHHHHHHHHHCC-CCCHHHHHHHHhcccHHHHHHHHHHHHHC--CCee
Confidence 345788888888 999999999 9999999999999999998 7787
No 93
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=69.26 E-value=4.1 Score=30.84 Aligned_cols=49 Identities=10% Similarity=0.112 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc-----CCceEeecCcc
Q 023862 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT-----DGFLEVSDEGD 136 (276)
Q Consensus 85 ~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~-----~GhLeVSesGD 136 (276)
-.|++++. .| ++..++|..+||+-..+++.|..|.... .+....|+.|.
T Consensus 11 ~~IL~~i~-~~--~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~~~~~~LT~kG~ 64 (95)
T 1r7j_A 11 QAILEACK-SG--SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQEGKQYMLTKKGE 64 (95)
T ss_dssp HHHHHHHT-TC--BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECHHHH
T ss_pred HHHHHHHH-cC--CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEECCeeEEChhHH
Confidence 45566665 23 9999999999999999999999998753 33344555444
No 94
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=69.17 E-value=22 Score=30.77 Aligned_cols=77 Identities=14% Similarity=0.113 Sum_probs=58.0
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcCcchHHHhhhhhHHHhHHHH
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPV 161 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP~nfRs~L~~Ks~r~rl~~~ 161 (276)
+.+.+|++.++ -+-+|+.+||-+.|||=.+||-.|..|+.+ |-++-=+-|...|+==. .+.+. .++..+
T Consensus 11 erk~~ILE~Lk--~G~~~t~~Iak~LGlShg~aq~~Ly~LeRE--G~V~~Vk~GK~ayw~L~------~s~y~-~kV~di 79 (165)
T 2vxz_A 11 VRLRDILALLA--DGCKTTSLIQQRLGLSHGRAKALIYVLEKE--GRVTRVAFGNVALVCLS------MDQYR-QLVDGM 79 (165)
T ss_dssp HHHHHHHHHHT--TCCEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSCEEEEETTEEEEESC------HHHHH-HHHHHH
T ss_pred HHHHHHHHHHH--hCCccHHHHHHHhCCcHHHHHHHHHHHHhc--CceEEEEEccEEEEEec------HHHHH-HHHHHH
Confidence 45678888888 889999999999999999999999988875 44444567888888631 22222 267777
Q ss_pred HHHHhhhh
Q 023862 162 IDKAKAAA 169 (276)
Q Consensus 162 ~~k~w~v~ 169 (276)
++-+|..+
T Consensus 80 lrel~~~l 87 (165)
T 2vxz_A 80 IREVERLV 87 (165)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777654
No 95
>2kif_A O6-methylguanine-DNA methyltransferase; methods development, solution structure, DNA base repair methylguanine methyltransferase; NMR {Vibrio parahaemolyticus AQ3810} PDB: 2kim_A
Probab=69.14 E-value=7.9 Score=30.83 Aligned_cols=57 Identities=18% Similarity=0.241 Sum_probs=45.1
Q ss_pred hhhHHHHHHHHHc--CCceehhhhhhhcCCC--HHHHHHHHHH--HHhhcCCceEeecCccEE
Q 023862 82 DVRNRAMDAVDAC--NRRVTIGDVAGKAGLK--LNEAQKALQA--LAADTDGFLEVSDEGDVL 138 (276)
Q Consensus 82 ~~~~rim~Ave~l--g~rvTvgDVAa~aGL~--l~~Ae~aL~a--LAsD~~GhLeVSesGDIl 138 (276)
+.+.++.+++.+. |.-+|-||||...|.+ ...+-.+|.. ++-...||==|..+|.|-
T Consensus 3 ~F~~~V~~~l~~IP~G~v~TYg~iA~~~G~p~aaRaVG~Al~~Np~~~~iPcHRVv~s~G~l~ 65 (108)
T 2kif_A 3 QFLVQIFAVIHQIPKGKVSTYGEIAKMAGYPGYARHVGKALGNLPEGSKLPWFRVINSQGKIS 65 (108)
T ss_dssp HHHHHHHHHHTTCCTTCBEEHHHHHHHHTCTTCHHHHHHHHHHSCTTCSSCCTTEECTTSBCS
T ss_pred HHHHHHHHHHhcCCCCCcEeHHHHHHHhCCCCcHHHHHHHHHhCCCCCCCCCceeECCCCCCC
Confidence 5788999999998 6678899999999984 4555555554 345679999999999985
No 96
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=69.07 E-value=11 Score=28.23 Aligned_cols=48 Identities=13% Similarity=0.067 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHcC-CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 83 VRNRAMDAVDACN-RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 83 ~~~rim~Ave~lg-~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
.+-.++..+...+ ..+|+.|+|...|++...+-+.|..|..+ |.++-.
T Consensus 32 ~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~--Gli~r~ 80 (139)
T 3eco_A 32 EQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERK--KLIYRY 80 (139)
T ss_dssp HHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHC--CCEeec
Confidence 5678899998887 79999999999999999999999999887 555543
No 97
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=69.04 E-value=3.5 Score=30.32 Aligned_cols=41 Identities=7% Similarity=0.130 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHcCC-ceehhhhhhhcCCCHHHHHHHHHHHH
Q 023862 82 DVRNRAMDAVDACNR-RVTIGDVAGKAGLKLNEAQKALQALA 122 (276)
Q Consensus 82 ~~~~rim~Ave~lg~-rvTvgDVAa~aGL~l~~Ae~aL~aLA 122 (276)
..=..|++.++..|| +.++.++|...|++.+++++.|..|.
T Consensus 32 ~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~vL~~lQ 73 (76)
T 2k9l_A 32 ELALELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKVL 73 (76)
T ss_dssp HHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHHHHHHHh
Confidence 344667889999999 78999999999999999999998775
No 98
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=68.89 E-value=3.1 Score=32.00 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=25.0
Q ss_pred chhhHHHHHH----HHHcCCceehhhhhhhcCCCHHH
Q 023862 81 ADVRNRAMDA----VDACNRRVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 81 ~~~~~rim~A----ve~lg~rvTvgDVAa~aGL~l~~ 113 (276)
.+.+.+|++| +.+.|+.+|+.|||.++|++...
T Consensus 8 ~~~r~~Il~aA~~lf~~~G~~~t~~~IA~~aGvs~~t 44 (190)
T 3jsj_A 8 QSPRERLLEAAAALTYRDGVGIGVEALCKAAGVSKRS 44 (190)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHTCCHHH
T ss_pred chHHHHHHHHHHHHHHHhCccccHHHHHHHhCCCHHH
Confidence 3456666655 55679889999999999987643
No 99
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=68.85 E-value=3.2 Score=32.41 Aligned_cols=33 Identities=21% Similarity=0.212 Sum_probs=25.0
Q ss_pred chhhHHHHHHHH----HcCCc-eehhhhhhhcCCCHHH
Q 023862 81 ADVRNRAMDAVD----ACNRR-VTIGDVAGKAGLKLNE 113 (276)
Q Consensus 81 ~~~~~rim~Ave----~lg~r-vTvgDVAa~aGL~l~~ 113 (276)
.+.+.+|++|.. +.|+. +|+.|||.++|++...
T Consensus 16 ~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t 53 (218)
T 3gzi_A 16 TQNRDKLILAARNLFIERPYAQVSIREIASLAGTDPGL 53 (218)
T ss_dssp HHHHHHHHHHHHHHHHTSCCSCCCHHHHHHHHTSCTHH
T ss_pred hHHHHHHHHHHHHHHHHCCCCcCCHHHHHHHhCCCHHH
Confidence 356677766655 45985 9999999999988654
No 100
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=68.70 E-value=5.3 Score=32.20 Aligned_cols=50 Identities=10% Similarity=0.118 Sum_probs=40.5
Q ss_pred chhhHHHHHHHHHcCCceehhhhhhhcCC---CHHH-HHHHHHHHHhhc---CCceEee
Q 023862 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGL---KLNE-AQKALQALAADT---DGFLEVS 132 (276)
Q Consensus 81 ~~~~~rim~Ave~lg~rvTvgDVAa~aGL---~l~~-Ae~aL~aLAsD~---~GhLeVS 132 (276)
.++|++|+++++ +.-.|+.|+|...|+ +..+ +-..|..+|.-. |..|.|.
T Consensus 10 ~T~Re~Ii~lL~--~~plta~ei~~~l~i~~~~~ke~Vy~hLeHIaksl~r~g~~L~v~ 66 (105)
T 2gmg_A 10 ATRREKIIELLL--EGDYSPSELARILDMRGKGSKKVILEDLKVISKIAKREGMVLLIK 66 (105)
T ss_dssp HHHHHHHHHHTT--TSCBCTTHHHHSSCCCSSCCHHHHHHHHHHHHHHHTTTTEEEEEC
T ss_pred ccHHHHHHHHHH--cCCCCHHHHHHHhCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 578999999997 789999999999999 7777 888888887654 3355543
No 101
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=68.65 E-value=21 Score=28.69 Aligned_cols=56 Identities=13% Similarity=0.111 Sum_probs=41.0
Q ss_pred HHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceE--eecCccE--EEEcCc
Q 023862 88 MDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLE--VSDEGDV--LYVFPN 143 (276)
Q Consensus 88 m~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLe--VSesGDI--lYvFP~ 143 (276)
+..-++.....|+.++|.+.|++..++.+.|..|..+.-=.++ ..++|.+ .|.|-.
T Consensus 42 ~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~p 101 (135)
T 2v79_A 42 KMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQP 101 (135)
T ss_dssp HHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHH
T ss_pred HHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHHH
Confidence 3343334567899999999999999999999999998655553 2455765 455433
No 102
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=68.63 E-value=2.8 Score=33.46 Aligned_cols=34 Identities=12% Similarity=0.265 Sum_probs=25.3
Q ss_pred CchhhHHHHHH----HHHcCCc-eehhhhhhhcCCCHHH
Q 023862 80 PADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (276)
Q Consensus 80 ~~~~~~rim~A----ve~lg~r-vTvgDVAa~aGL~l~~ 113 (276)
+++.+.+|++| +.+.|+. +|+.|||.++|++...
T Consensus 3 ~~~tr~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t 41 (228)
T 3nnr_A 3 TMKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGN 41 (228)
T ss_dssp -CCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHH
T ss_pred CchHHHHHHHHHHHHHHHhChhhcCHHHHHHHhCCCCcc
Confidence 35567777665 5567876 9999999999988643
No 103
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=68.62 E-value=17 Score=29.18 Aligned_cols=62 Identities=6% Similarity=0.085 Sum_probs=50.3
Q ss_pred CchhhHHHHHHHHHcCCceehhhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEeecCccEEEEc
Q 023862 80 PADVRNRAMDAVDACNRRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (276)
Q Consensus 80 ~~~~~~rim~Ave~lg~rvTvgDVAa~a-----GL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvF 141 (276)
....|..|++++.+.+.-+|+.||.... ++++..+=+.|..|....=-+=-...+|...|..
T Consensus 25 ~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 91 (150)
T 2xig_A 25 NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLETSKSGRRYEI 91 (150)
T ss_dssp CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEETTTEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 3556788999999988899999999887 8999999999999998765543334567788876
No 104
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=68.23 E-value=10 Score=28.62 Aligned_cols=47 Identities=13% Similarity=0.189 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
.+-.|+..+...+ .+|+.|+|...|++...+-+.|..|..+ |.++..
T Consensus 41 ~~~~iL~~l~~~~-~~t~~ela~~l~~~~~~vs~~l~~Le~~--Glv~r~ 87 (152)
T 3bj6_A 41 GQRAILEGLSLTP-GATAPQLGAALQMKRQYISRILQEVQRA--GLIERR 87 (152)
T ss_dssp HHHHHHHHHHHST-TEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHhCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCeeec
Confidence 4678899998866 7999999999999999999999999887 445443
No 105
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=68.00 E-value=14 Score=29.09 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=48.3
Q ss_pred chhhHHHHHHHHHcC-Cceehhhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEeecCccEEEEc
Q 023862 81 ADVRNRAMDAVDACN-RRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (276)
Q Consensus 81 ~~~~~rim~Ave~lg-~rvTvgDVAa~a-----GL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvF 141 (276)
...|..|++++.+.+ .-+|+.||..+. ++++..+=+.|..|....=-+=-..++|...|..
T Consensus 17 T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 83 (136)
T 1mzb_A 17 TLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFDGGHAVFEL 83 (136)
T ss_dssp CHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECSSSSSCEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 457788999999887 889999999887 8999999999999998765442223367778875
No 106
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=67.95 E-value=5.5 Score=33.75 Aligned_cols=62 Identities=10% Similarity=0.094 Sum_probs=50.1
Q ss_pred CCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEE
Q 023862 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYV 140 (276)
Q Consensus 79 l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYv 140 (276)
++.+.-++|++-|-+.|.-+|+.-|+.+-.++...|+++|+.|.+..-=.+=+....-.||.
T Consensus 45 fDk~tydKL~KEVpk~gKlITpsvlseRlkI~gSLARkaLreL~~kGlIk~V~kh~~q~IYT 106 (143)
T 2xzm_8 45 IEKKNVESIINNPSKVGKVLTVSTVVEKLKVNGSLARQLMRTMADRKLVEKVAKNGNQWVYS 106 (143)
T ss_dssp CCHHHHHHHHTCCTTSCSEECHHHHHHHHCBCHHHHHHHHHHHHHTTSEEEEEEETTEEEEE
T ss_pred ecHHHHHHHHHHhcccceeecHHHHHHHhcchHHHHHHHHHHHHHCCCEEEEecCCCeEEEe
Confidence 35667778888888888899999999999999999999999999875544444446667775
No 107
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=67.87 E-value=9.9 Score=28.59 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeV 131 (276)
.+-.++..+...++.+|+.|+|...|++...+-+.|..|.++ |-++.
T Consensus 36 ~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~--glv~r 82 (147)
T 2hr3_A 36 SQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERG--GLIVR 82 (147)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHC--CCEee
Confidence 346788888885667999999999999999999999999987 44444
No 108
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=67.51 E-value=10 Score=29.95 Aligned_cols=48 Identities=10% Similarity=0.156 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
.+-.|+..+...+..+|+.|+|...|++...+-+.|..|..+ |-++-.
T Consensus 54 ~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~--GlV~r~ 101 (166)
T 3deu_A 54 THWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDK--GLISRQ 101 (166)
T ss_dssp HHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEEC
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHC--CCEEee
Confidence 467899999987888999999999999999999999999886 555543
No 109
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=66.91 E-value=3.1 Score=32.32 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=24.3
Q ss_pred hhHHHHHH----HHHcCCceehhhhhhhcCCCHHH
Q 023862 83 VRNRAMDA----VDACNRRVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 83 ~~~rim~A----ve~lg~rvTvgDVAa~aGL~l~~ 113 (276)
.+.+|+++ +.+.|+.+|+.|||.++|++...
T Consensus 17 ~r~~Il~aA~~lf~~~G~~~s~~~Ia~~agvs~~t 51 (199)
T 2rek_A 17 NYDRIIEAAAAEVARHGADASLEEIARRAGVGSAT 51 (199)
T ss_dssp HHHHHHHHHHHHHHHHGGGCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCchHH
Confidence 45666655 55679999999999999998754
No 110
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=66.89 E-value=38 Score=25.68 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=32.0
Q ss_pred CCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecC
Q 023862 95 NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE 134 (276)
Q Consensus 95 g~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSes 134 (276)
++.+|+.|+|...|++...+.+.|..|..+ |-++....
T Consensus 20 ~~~~~~~ela~~l~vs~~tvs~~l~~Le~~--Glv~r~~~ 57 (142)
T 1on2_A 20 KGYARVSDIAEALAVHPSSVTKMVQKLDKD--EYLIYEKY 57 (142)
T ss_dssp HSSCCHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEEETT
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHC--CCEEEeeC
Confidence 457999999999999999999999999874 66665543
No 111
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=66.86 E-value=10 Score=28.31 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
.+-.|+..+...++.+|+.|+|...|++...+-+.|..|..+ |-++..
T Consensus 38 ~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~--glv~r~ 85 (146)
T 2fbh_A 38 ARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQ--GLVRRL 85 (146)
T ss_dssp THHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHC--CCeeec
Confidence 456789999556678999999999999999999999999976 444443
No 112
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=66.56 E-value=11 Score=30.80 Aligned_cols=49 Identities=27% Similarity=0.404 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCC-HHHHHHHHHHHHhhcCCceEee
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLK-LNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~-l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
++-++|-++.++.|...|+.|+|.+.|++ ...+.+-+..|+.. |.|++.
T Consensus 10 ~i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~~l~~~--~~l~~~ 59 (202)
T 1jhf_A 10 EVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARK--GVIEIV 59 (202)
T ss_dssp HHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHT--TSEEEC
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHHHHHHC--CCceeC
Confidence 34566777777788888999999999999 88888888888874 466654
No 113
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=66.42 E-value=4.7 Score=30.46 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=24.3
Q ss_pred hhhHHHHHHH----HHcCCc-eehhhhhhhcCCCHHH
Q 023862 82 DVRNRAMDAV----DACNRR-VTIGDVAGKAGLKLNE 113 (276)
Q Consensus 82 ~~~~rim~Av----e~lg~r-vTvgDVAa~aGL~l~~ 113 (276)
+.+.+|++|+ .+.|+. +|+.|||.++|++...
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t 44 (188)
T 3qkx_A 8 DLAEQIFSATDRLMAREGLNQLSMLKLAKEANVAAGT 44 (188)
T ss_dssp HHHHHHHHHHHHHHHHSCSTTCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcch
Confidence 4556666554 567875 9999999999998654
No 114
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=66.40 E-value=3.9 Score=31.34 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=23.8
Q ss_pred hhhHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023862 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
+.+.+|++| +.+.|+ .+|+.|||.++|++...
T Consensus 14 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t 50 (203)
T 3f1b_A 14 VREQQMLDAAVDVFSDRGFHETSMDAIAAKAEISKPM 50 (203)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccccHHHHHHHhCCchHH
Confidence 345566555 556687 89999999999988654
No 115
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=66.32 E-value=16 Score=27.56 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
.+-.|+..+.+.+ .+|+.|+|...|++...+-+.|..|.++ |-++..
T Consensus 43 ~~~~iL~~l~~~~-~~t~~ela~~l~~~~~tvs~~l~~Le~~--Glv~r~ 89 (150)
T 2rdp_A 43 PQFVALQWLLEEG-DLTVGELSNKMYLACSTTTDLVDRMERN--GLVARV 89 (150)
T ss_dssp HHHHHHHHHHHHC-SBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHCCCchhHHHHHHHHHHC--CCeeec
Confidence 5678899998865 6999999999999999999999999987 555543
No 116
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=66.12 E-value=13 Score=28.01 Aligned_cols=47 Identities=13% Similarity=0.340 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
.+-.++..+...+ .+|+.|+|...|++...+-+.|..|..+ |-++..
T Consensus 41 ~~~~iL~~l~~~~-~~t~~ela~~l~~~~~tvs~~l~~Le~~--Glv~r~ 87 (148)
T 3nrv_A 41 TEWRIISVLSSAS-DCSVQKISDILGLDKAAVSRTVKKLEEK--KYIEVN 87 (148)
T ss_dssp HHHHHHHHHHHSS-SBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEC-
T ss_pred HHHHHHHHHHcCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEee
Confidence 4567899998877 8999999999999999999999999988 666544
No 117
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=65.85 E-value=8.4 Score=29.11 Aligned_cols=43 Identities=16% Similarity=0.269 Sum_probs=32.4
Q ss_pred CCCCchhhHHHHHHHHHc-CCceehhhhhhhcCCCHHHHHHHHH
Q 023862 77 DKLPADVRNRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQ 119 (276)
Q Consensus 77 ~~l~~~~~~rim~Ave~l-g~rvTvgDVAa~aGL~l~~Ae~aL~ 119 (276)
+.+..+.-.++++.+++. ....|+.|+|...|++....++.+.
T Consensus 2 ~~~~~~~~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk 45 (120)
T 3mkl_A 2 NALQPNMRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLR 45 (120)
T ss_dssp ---CCCHHHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 445566778888888877 6689999999999999987765543
No 118
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=65.71 E-value=6.7 Score=28.44 Aligned_cols=43 Identities=7% Similarity=0.146 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCceehhhhhhhcCCCHHH-HHHHHHHHHhhcCCceE
Q 023862 86 RAMDAVDACNRRVTIGDVAGKAGLKLNE-AQKALQALAADTDGFLE 130 (276)
Q Consensus 86 rim~Ave~lg~rvTvgDVAa~aGL~l~~-Ae~aL~aLAsD~~GhLe 130 (276)
.++..+.+.++.+|+.|+|...|++... +-+.|..|..+ |.++
T Consensus 19 ~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~--Glv~ 62 (95)
T 2pg4_A 19 PTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRA--GLVK 62 (95)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHT--TSEE
T ss_pred HHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHC--CCee
Confidence 4567777888789999999999999999 99999999876 5555
No 119
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=65.37 E-value=31 Score=30.03 Aligned_cols=55 Identities=22% Similarity=0.260 Sum_probs=41.3
Q ss_pred hHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEE
Q 023862 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLY 139 (276)
Q Consensus 84 ~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlY 139 (276)
...+...++..+..++..|++..+|++.+++++.|.+|.+... -+++..+++..|
T Consensus 4 ~~~l~~~L~~~~~~~~~~~l~~~~~l~~~~l~~~l~~l~~~~~-~~~~~~~~~~~~ 58 (258)
T 1lva_A 4 EKILAQIIQEHREGLDWQEAATRASLSLEETRKLLQSMAAAGQ-VTLLRVENDLYA 58 (258)
T ss_dssp HHHHHHHHHTCTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS-EEEEEETTEEEE
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHHHHhCCC-EEEeccCCccEE
Confidence 4557777888888887799999999999999999999885544 555544344334
No 120
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=65.10 E-value=4.6 Score=30.85 Aligned_cols=32 Identities=19% Similarity=0.394 Sum_probs=23.7
Q ss_pred hhhHHHHHH----HHHcCCc-eehhhhhhhcCCCHHH
Q 023862 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~r-vTvgDVAa~aGL~l~~ 113 (276)
+.+.+|++| +.+.|+. +|+.|||.++|++...
T Consensus 11 ~~r~~il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t 47 (196)
T 3he0_A 11 DKRDQILAAAEQLIAESGFQGLSMQKLANEAGVAAGT 47 (196)
T ss_dssp CCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcch
Confidence 345555554 5667975 9999999999988654
No 121
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=65.05 E-value=2.7 Score=36.52 Aligned_cols=51 Identities=14% Similarity=0.312 Sum_probs=39.0
Q ss_pred HHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecC-ccEEEEc
Q 023862 87 AMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE-GDVLYVF 141 (276)
Q Consensus 87 im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSes-GDIlYvF 141 (276)
|++++.+.+..+|+.|+|.++|++...+-+-|..|.+. |-|+-.++ |. |.-
T Consensus 11 IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~--G~v~~~~~~~~--Y~l 62 (260)
T 3r4k_A 11 LLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEA--GFVEQVEGARS--YRL 62 (260)
T ss_dssp HHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHT--TSEEECSSSSE--EEE
T ss_pred HHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEcCCCCc--EEc
Confidence 45555555678999999999999999999999999865 56665544 43 665
No 122
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=65.00 E-value=4.1 Score=33.36 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=25.2
Q ss_pred chhhHHHHHHHH----HcCC-ceehhhhhhhcCCCHHH
Q 023862 81 ADVRNRAMDAVD----ACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 81 ~~~~~rim~Ave----~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
.+.+.+|++|.. +.|+ .+|+.|||.++|++...
T Consensus 42 ~~~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~t 79 (255)
T 3g1o_A 42 DDRELAILATAENLLEDRPLADISVDDLAKGAGISRPT 79 (255)
T ss_dssp CHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCccCcHHHHHHHhCCCHHH
Confidence 456677766654 5687 79999999999988643
No 123
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=64.98 E-value=8.1 Score=38.73 Aligned_cols=62 Identities=18% Similarity=0.253 Sum_probs=50.3
Q ss_pred chhhHHHHHHHHHcCCceehhhhhhhcC-------CCHHHHHHHHHHHHhhcCCceEeecCccEEEEcCcch
Q 023862 81 ADVRNRAMDAVDACNRRVTIGDVAGKAG-------LKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNY 145 (276)
Q Consensus 81 ~~~~~rim~Ave~lg~rvTvgDVAa~aG-------L~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP~nf 145 (276)
.....+|++.++. .+.+|+.++|.+-| .+..-|+..|..+.. .|.|=+.++.+=+|.||.-|
T Consensus 493 ~~~~~~il~l~~~-~g~vT~~~la~~lg~~~~~~~Ws~~~A~e~L~~~e~--eG~l~rDd~~~G~~yypNlf 561 (566)
T 1w7p_D 493 DVVKEKLVDLIGD-NPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVD--EGDLLIDKQLSGIYYYKNSY 561 (566)
T ss_dssp HHHHHHHHHHHTT-STTCCHHHHHHHHSCSSSCCCBCHHHHHHHHHHHHH--TTSEEEEEETTEEEEEECCS
T ss_pred hHHHHHHHHHHHh-cCCcCHHHHHHHhCCccccCcccHHHHHHHHHHHHH--cCCEEEECCCCceEEehhhc
Confidence 4677888888876 67999999999999 999999999998554 57777777666689998544
No 124
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=64.90 E-value=4.2 Score=30.99 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=25.1
Q ss_pred hhhHHHHH----HHHHcCC-ceehhhhhhhcCCCHHHH
Q 023862 82 DVRNRAMD----AVDACNR-RVTIGDVAGKAGLKLNEA 114 (276)
Q Consensus 82 ~~~~rim~----Ave~lg~-rvTvgDVAa~aGL~l~~A 114 (276)
+.+.+|++ .+.+.|+ .+|+.|||.++|++....
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~ 45 (206)
T 3dew_A 8 DCRSRLMEVATELFAQKGFYGVSIRELAQAAGASISMI 45 (206)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcccCcHHHHHHHhCCCHHHH
Confidence 34555554 4567787 899999999999987654
No 125
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=64.68 E-value=14 Score=22.37 Aligned_cols=40 Identities=13% Similarity=0.017 Sum_probs=30.9
Q ss_pred CCCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHH
Q 023862 78 KLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQA 120 (276)
Q Consensus 78 ~l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~a 120 (276)
.|+++.+..|+...+ ...|..+||...|++...+.+-+..
T Consensus 5 ~l~~~~~~~i~~~~~---~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKL---LNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHH---TTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHH---cCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 567777777776553 3479999999999999999877653
No 126
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=64.53 E-value=47 Score=25.64 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcCc
Q 023862 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (276)
Q Consensus 85 ~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP~ 143 (276)
..|+..+... +..|+.|+|...|++...+.+.|..|..+ |-++... |.-+|+=+.
T Consensus 43 ~~i~~~l~~~-~~~~~~~la~~l~vs~~tvs~~l~~Le~~--Glv~r~~-~~~~~lT~~ 97 (155)
T 2h09_A 43 ELISDLIREV-GEARQVDMAARLGVSQPTVAKMLKRLATM--GLIEMIP-WRGVFLTAE 97 (155)
T ss_dssp HHHHHHHHHH-SCCCHHHHHHHHTSCHHHHHHHHHHHHHT--TCEEEET-TTEEEECHH
T ss_pred HHHHHHHHhC-CCcCHHHHHHHhCcCHHHHHHHHHHHHHC--CCEEEec-CCceEEChh
Confidence 3344455544 56899999999999999999999999988 5666543 334454433
No 127
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=64.53 E-value=2.4 Score=32.19 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=23.7
Q ss_pred hhhHHHHHHH----HHcCCc-eehhhhhhhcCCCHHH
Q 023862 82 DVRNRAMDAV----DACNRR-VTIGDVAGKAGLKLNE 113 (276)
Q Consensus 82 ~~~~rim~Av----e~lg~r-vTvgDVAa~aGL~l~~ 113 (276)
+.+.+|++|. .+.|+. +|+.|||.++|++...
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t 44 (195)
T 3pas_A 8 SKRIAFLEATVREVADHGFSATSVGKIAKAAGLSPAT 44 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHcChHhcCHHHHHHHhCCCchH
Confidence 4566666654 455865 9999999999988654
No 128
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=64.39 E-value=13 Score=33.36 Aligned_cols=58 Identities=16% Similarity=0.158 Sum_probs=45.0
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcCc
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP~ 143 (276)
+.+.+|++.+. .+..+|+.|+|.+.|+|...+++.|..|.+ .|.+..+..|. =|....
T Consensus 5 ~r~~~Il~~L~-~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~--~G~~i~~~~g~-GY~l~~ 62 (321)
T 1bia_A 5 TVPLKLIALLA-NGEFHSGEQLGETLGMSRAAINKHIQTLRD--WGVDVFTVPGK-GYSLPE 62 (321)
T ss_dssp HHHHHHHHHHT-TSSCBCHHHHHHHHTSCHHHHHHHHHHHHH--TTCCCEEETTT-EEECSS
T ss_pred hHHHHHHHHHH-cCCCcCHHHHHHHHCCCHHHHHHHHHHHHh--CCCcEEEecCC-CcEEee
Confidence 45667888884 577899999999999999999999999976 44555555665 476643
No 129
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=64.36 E-value=4.9 Score=30.99 Aligned_cols=31 Identities=16% Similarity=0.322 Sum_probs=23.5
Q ss_pred hhHHHHH----HHHHcCCc-eehhhhhhhcCCCHHH
Q 023862 83 VRNRAMD----AVDACNRR-VTIGDVAGKAGLKLNE 113 (276)
Q Consensus 83 ~~~rim~----Ave~lg~r-vTvgDVAa~aGL~l~~ 113 (276)
.+.+|++ .+.+.|+. +|+.|||.++|++...
T Consensus 15 ~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t 50 (220)
T 3lhq_A 15 TRQHILDVALRLFSQQGVSATSLAEIANAAGVTRGA 50 (220)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcee
Confidence 4555554 45678876 9999999999988654
No 130
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=64.24 E-value=4.7 Score=30.81 Aligned_cols=33 Identities=12% Similarity=0.074 Sum_probs=25.0
Q ss_pred chhhHHHHHHH----HHcCCc-eehhhhhhhcCCCHHH
Q 023862 81 ADVRNRAMDAV----DACNRR-VTIGDVAGKAGLKLNE 113 (276)
Q Consensus 81 ~~~~~rim~Av----e~lg~r-vTvgDVAa~aGL~l~~ 113 (276)
.+.+.+|+++. .+.|+. +|+.|||.++|++...
T Consensus 16 ~~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t 53 (206)
T 3kz9_A 16 LKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVAT 53 (206)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcccccHHHHHHHhCCCHHH
Confidence 34566676654 556987 9999999999988654
No 131
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=64.09 E-value=4.3 Score=31.27 Aligned_cols=32 Identities=9% Similarity=0.123 Sum_probs=24.1
Q ss_pred chhhHHHHH----HHHHcCC-ceehhhhhhhcCCCHH
Q 023862 81 ADVRNRAMD----AVDACNR-RVTIGDVAGKAGLKLN 112 (276)
Q Consensus 81 ~~~~~rim~----Ave~lg~-rvTvgDVAa~aGL~l~ 112 (276)
.+.+.+|++ .+.+.|+ .+|+.|||.++|++..
T Consensus 11 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~ 47 (202)
T 3lwj_A 11 KERRQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTG 47 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCSCHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCch
Confidence 345566655 4667887 6999999999998754
No 132
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=63.55 E-value=21 Score=26.61 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeV 131 (276)
.+-.++..+.+.+ .+|+.|+|...|++...+-+.|..|..+ |-++.
T Consensus 30 ~~~~iL~~l~~~~-~~t~~~la~~l~~s~~~vs~~l~~Le~~--gli~r 75 (144)
T 1lj9_A 30 GQYLYLVRVCENP-GIIQEKIAELIKVDRTTAARAIKRLEEQ--GFIYR 75 (144)
T ss_dssp THHHHHHHHHHST-TEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHCc-CcCHHHHHHHHCCCHhHHHHHHHHHHHC--CCEEe
Confidence 4567888888765 7999999999999999999999999988 44544
No 133
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=63.47 E-value=6.4 Score=35.19 Aligned_cols=62 Identities=19% Similarity=0.241 Sum_probs=46.8
Q ss_pred CCCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcCcc
Q 023862 78 KLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNN 144 (276)
Q Consensus 78 ~l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP~n 144 (276)
-|-..++-.|.+++.+.++..|+.|+|+++|++..-+++=|++|++- |.|+.. .| .|.-.+-
T Consensus 31 ~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~--g~l~~~-~~--~y~~t~~ 92 (363)
T 3dp7_A 31 VSRLMLKFGIFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLTI--GTILLE-ED--RYVLAKA 92 (363)
T ss_dssp HHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHH--TSEEEE-TT--EEEECHH
T ss_pred HHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHhhC--CCeEec-CC--EEecccc
Confidence 34445566677888876778999999999999999999999999874 677653 22 4665544
No 134
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=63.14 E-value=3.3 Score=32.10 Aligned_cols=33 Identities=15% Similarity=0.301 Sum_probs=22.5
Q ss_pred chhhHHHHHHHHH-----cC-CceehhhhhhhcCCCHHH
Q 023862 81 ADVRNRAMDAVDA-----CN-RRVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 81 ~~~~~rim~Ave~-----lg-~rvTvgDVAa~aGL~l~~ 113 (276)
.+.+.+|++|..+ .| ..+|+.|||.++|++...
T Consensus 23 ~~~r~~Il~aA~~~lf~~~G~~~~t~~~Ia~~agvs~~t 61 (212)
T 3nxc_A 23 RNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAA 61 (212)
T ss_dssp CTTHHHHHHHHHHHHHC------CCHHHHHHHTTSCHHH
T ss_pred hHHHHHHHHHHHHHHHhcCChhhcCHHHHHHHhCCChhH
Confidence 3457888888333 36 469999999999988654
No 135
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=62.85 E-value=13 Score=32.05 Aligned_cols=53 Identities=23% Similarity=0.330 Sum_probs=39.0
Q ss_pred hHHHHHHHHHc---CCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEc
Q 023862 84 RNRAMDAVDAC---NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (276)
Q Consensus 84 ~~rim~Ave~l---g~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvF 141 (276)
-.|.++.++.+ +..+|+.|+|.+.|++...+.+-|..|.+ .|.|+-. +| -|.-
T Consensus 13 ~~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~--~G~v~~~-~~--~Y~L 68 (257)
T 2g7u_A 13 IERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQK--LGYVAGS-GG--RWSL 68 (257)
T ss_dssp HHHHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE-TT--EEEE
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEeC-CC--EEEE
Confidence 34555555544 46799999999999999999999999987 4566554 23 4554
No 136
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=62.83 E-value=4.8 Score=30.53 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=24.1
Q ss_pred hhhHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023862 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
+.+.+|++| +.+.|+ .+|+.|||.++|++...
T Consensus 10 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t 46 (196)
T 3col_A 10 NKQVKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSN 46 (196)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHH
Confidence 455666655 455687 79999999999988754
No 137
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=62.67 E-value=5.5 Score=30.41 Aligned_cols=30 Identities=30% Similarity=0.514 Sum_probs=22.5
Q ss_pred hhhHHHHHH----HHHcCC-ceehhhhhhhcCCCH
Q 023862 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKL 111 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l 111 (276)
+.+.+|+++ +.+.|+ .+|+.|||.++|++.
T Consensus 7 ~~r~~Il~aA~~l~~~~G~~~~s~~~IA~~agvs~ 41 (180)
T 2fd5_A 7 QTRARILGAATQALLERGAVEPSVGEVMGAAGLTV 41 (180)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCCHHHHHHHTTCCG
T ss_pred cCHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCc
Confidence 345556555 556788 799999999999864
No 138
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=62.65 E-value=2.6 Score=36.43 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=43.2
Q ss_pred HHcCCceehhhhhhhcCCCHHHHHHHHH--------------HHHhhcC-------CceEeecCccEEEEcCcchHHHhh
Q 023862 92 DACNRRVTIGDVAGKAGLKLNEAQKALQ--------------ALAADTD-------GFLEVSDEGDVLYVFPNNYRAKLA 150 (276)
Q Consensus 92 e~lg~rvTvgDVAa~aGL~l~~Ae~aL~--------------aLAsD~~-------GhLeVSesGDIlYvFP~nfRs~L~ 150 (276)
+....++|+.|||..+|+|...+-++|+ +.|.+.| ..|.-..++-|..+.|. +.
T Consensus 5 ~~~~~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~~~~lgY~pn~~a~~l~~~~~~~Ig~i~~~-----~~ 79 (344)
T 3kjx_A 5 ADTKRPLTLRDVSEASGVSEMTVSRVLRNRGDVSDATRARVLAAAKELGYVPNKIAGALASNRVNLVAVIIPS-----LS 79 (344)
T ss_dssp -----CCCHHHHHHHHCCCSHHHHHHHTTCSCCCHHHHHHHHHHHHHHTCCCCCCCSCSTTSCCSEEEEEESC-----SS
T ss_pred ccCCCCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCCCHHHHHhhcCCCCEEEEEeCC-----CC
Confidence 3455689999999999999999987773 3344332 23445557778888875 23
Q ss_pred hhhHHHhHHHHHHHHhh
Q 023862 151 AKSFRLKVEPVIDKAKA 167 (276)
Q Consensus 151 ~Ks~r~rl~~~~~k~w~ 167 (276)
+.+|..-++.+-+.+..
T Consensus 80 ~~~~~~~~~gi~~~a~~ 96 (344)
T 3kjx_A 80 NMVFPEVLTGINQVLED 96 (344)
T ss_dssp SSSHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 45555544444444433
No 139
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=62.64 E-value=43 Score=24.59 Aligned_cols=47 Identities=15% Similarity=0.219 Sum_probs=39.4
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeV 131 (276)
..+-.|+..+.+. +.+|+.|+|...|++...+-+.|..|.++ |-++.
T Consensus 29 ~~~~~iL~~l~~~-~~~~~~ela~~l~~s~~tvs~~l~~L~~~--glv~~ 75 (138)
T 3bpv_A 29 DAQVACLLRIHRE-PGIKQDELATFFHVDKGTIARTLRRLEES--GFIER 75 (138)
T ss_dssp HHHHHHHHHHHHS-TTCBHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEe
Confidence 3467788888875 67999999999999999999999999987 44544
No 140
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=62.51 E-value=6.6 Score=34.23 Aligned_cols=59 Identities=20% Similarity=0.313 Sum_probs=45.2
Q ss_pred ccccCCCCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCc
Q 023862 73 IVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG 135 (276)
Q Consensus 73 ~v~~~~l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesG 135 (276)
.+.+--|-..++-.|.+++.+ +..|+.|+|.++|++....++=|+.|++ -|-|+-.++|
T Consensus 16 ~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~~~~~~~l~rlLr~l~~--~gl~~~~~~~ 74 (332)
T 3i53_A 16 LATPMAVRVAATLRVADHIAA--GHRTAAEIASAAGAHADSLDRLLRHLVA--VGLFTRDGQG 74 (332)
T ss_dssp CHHHHHHHHHHHHTHHHHHHT--TCCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEECTTS
T ss_pred hHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHHCcCHHHHHHHHHHHHh--CCcEEecCCC
Confidence 334444556677778888864 4799999999999999999999999998 5666655444
No 141
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=62.36 E-value=17 Score=27.23 Aligned_cols=48 Identities=8% Similarity=0.070 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeec
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSe 133 (276)
.+-.|+..+...+ .+|+.|+|...|++...+-+.|..|..+ |-++...
T Consensus 38 ~~~~iL~~l~~~~-~~~~~ela~~l~~~~~tvs~~l~~L~~~--gli~r~~ 85 (142)
T 2bv6_A 38 PQFLVLTILWDES-PVNVKKVVTELALDTGTVSPLLKRMEQV--DLIKRER 85 (142)
T ss_dssp HHHHHHHHHHHSS-EEEHHHHHHHTTCCTTTHHHHHHHHHHT--TSEEEEE
T ss_pred HHHHHHHHHHHcC-CcCHHHHHHHHCCChhhHHHHHHHHHHC--CCEEeec
Confidence 4667899998765 6999999999999999999999999988 6665543
No 142
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=62.14 E-value=19 Score=28.88 Aligned_cols=62 Identities=8% Similarity=0.110 Sum_probs=49.3
Q ss_pred CchhhHHHHHHHHHcC-Cceehhhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEeecCccEEEEc
Q 023862 80 PADVRNRAMDAVDACN-RRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (276)
Q Consensus 80 ~~~~~~rim~Ave~lg-~rvTvgDVAa~a-----GL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvF 141 (276)
....|..|++++.+.+ .-+|+.||.... ++++..+=+.|..|....=-+=-..++|...|..
T Consensus 15 ~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 82 (150)
T 2w57_A 15 VTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHHFEGGKSVFEL 82 (150)
T ss_dssp CCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEECGGGCEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 3457888999998887 889999999887 8999999999999998764442233467788875
No 143
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=62.11 E-value=4.6 Score=35.08 Aligned_cols=51 Identities=31% Similarity=0.429 Sum_probs=6.7
Q ss_pred HcCCceehhhhhhhcCCCHHHHHHHHHH--------------HHhhcC-------CceEeecCccEEEEcCc
Q 023862 93 ACNRRVTIGDVAGKAGLKLNEAQKALQA--------------LAADTD-------GFLEVSDEGDVLYVFPN 143 (276)
Q Consensus 93 ~lg~rvTvgDVAa~aGL~l~~Ae~aL~a--------------LAsD~~-------GhLeVSesGDIlYvFP~ 143 (276)
....++|+.|||.++|+|...+-++|+. .|.+.| ..|.-..++-|..+.|.
T Consensus 8 ~g~~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~ 79 (355)
T 3e3m_A 8 PGHRPVTMRDVAKAAGVSRMTVSRALKKDSPISSETRERILKVVKDMNYVPDQVAGSLTTKRSGFVGLLLPS 79 (355)
T ss_dssp ---------------------------------------------------------------CEEEEEESC
T ss_pred CCCCCCcHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCCcCHHHHhhhcCCCCEEEEEeCC
Confidence 3456799999999999999999888862 222221 23445566778777775
No 144
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=62.06 E-value=14 Score=27.92 Aligned_cols=47 Identities=15% Similarity=0.086 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeV 131 (276)
..+-.|+..+...++ +|+.|+|...|++...+-+.|..|..+ |.++.
T Consensus 31 ~~q~~iL~~l~~~~~-~t~~eLa~~l~~~~~tvs~~l~~Le~~--Glv~r 77 (145)
T 3g3z_A 31 YNLFAVLYTLATEGS-RTQKHIGEKWSLPKQTVSGVCKTLAGQ--GLIEW 77 (145)
T ss_dssp HHHHHHHHHHHHHCS-BCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHHCCC-CCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEee
Confidence 355788999988775 999999999999999999999999876 55554
No 145
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=61.97 E-value=50 Score=25.12 Aligned_cols=48 Identities=10% Similarity=0.075 Sum_probs=40.3
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
..+-.||.++.+.+ .+|+.|+|...|++...+-+.|..|..+ |-++..
T Consensus 44 ~~~~~iL~~l~~~~-~~t~~ela~~l~is~~tvs~~l~~Le~~--Gli~r~ 91 (154)
T 2eth_A 44 TTELYAFLYVALFG-PKKMKEIAEFLSTTKSNVTNVVDSLEKR--GLVVRE 91 (154)
T ss_dssp HHHHHHHHHHHHHC-CBCHHHHHHHTTSCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEee
Confidence 34678899998876 6999999999999999999999999987 455443
No 146
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=61.83 E-value=7.4 Score=36.04 Aligned_cols=39 Identities=8% Similarity=0.242 Sum_probs=35.4
Q ss_pred hHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHH
Q 023862 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALA 122 (276)
Q Consensus 84 ~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLA 122 (276)
+..|++.+.+.+..+|+.|++..||+..+++-.+|+.|-
T Consensus 195 ~~~i~~~L~~~~~~isi~~is~~Tgi~~~Dii~tL~~l~ 233 (276)
T 3to7_A 195 SDTLITLLVEHQKEITIDEISSMTSMTTTDILHTAKTLN 233 (276)
T ss_dssp HHHHHHHHHHTCSEEEHHHHHHHHCBCHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCceeHHHHHHHhCCCHHHHHHHHHHCC
Confidence 467889999999999999999999999999999998873
No 147
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=61.50 E-value=5.7 Score=30.07 Aligned_cols=29 Identities=10% Similarity=0.220 Sum_probs=21.5
Q ss_pred hhhHHHH----HHHHHcCC-ceehhhhhhhcCCC
Q 023862 82 DVRNRAM----DAVDACNR-RVTIGDVAGKAGLK 110 (276)
Q Consensus 82 ~~~~rim----~Ave~lg~-rvTvgDVAa~aGL~ 110 (276)
+.+.+|+ +.+.+.|+ .+|+.|||.++|++
T Consensus 6 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs 39 (191)
T 1sgm_A 6 DSREKILHTASRLSQLQGYHATGLNQIVKESGAP 39 (191)
T ss_dssp CHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCC
T ss_pred chHHHHHHHHHHHHHHcCccccCHHHHHHHHCCC
Confidence 3455554 55667787 69999999999964
No 148
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=61.36 E-value=3 Score=32.84 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=25.6
Q ss_pred CCchhhHHHHHHH----HHcCC-ceehhhhhhhcCCCHH
Q 023862 79 LPADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLN 112 (276)
Q Consensus 79 l~~~~~~rim~Av----e~lg~-rvTvgDVAa~aGL~l~ 112 (276)
++|+.+.+|++|. .+.|| .+|+.|||.+||++..
T Consensus 2 ~~~~~r~~Il~aA~~lf~~~Gy~~~s~~~IA~~Agvskg 40 (202)
T 2id6_A 2 HMLSKRDAILKAAVEVFGKKGYDRATTDEIAEKAGVAKG 40 (202)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCTH
T ss_pred CchHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHH
Confidence 3456677777665 55686 6999999999998753
No 149
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=61.35 E-value=5.2 Score=30.98 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=24.7
Q ss_pred chhhHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023862 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 81 ~~~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
.+.+.+|++| +.+.|+ .+|+.|||.++|++...
T Consensus 25 ~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t 62 (217)
T 3mvp_A 25 IEKRNKILQVAKDLFSDKTYFNVTTNEIAKKADVSVGT 62 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHH
T ss_pred hhHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCChhH
Confidence 3455666555 566787 89999999999988643
No 150
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=61.25 E-value=5.9 Score=30.83 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=24.9
Q ss_pred chhhHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023862 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 81 ~~~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
.+.+.+|++| +.+.|+ .+|+.|||.++|++...
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~ti~~Ia~~agvs~~t 47 (216)
T 3f0c_A 10 DGKLELIINAAQKRFAHYGLCKTTMNEIASDVGMGKAS 47 (216)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCHHH
Confidence 3456666555 677898 59999999999988643
No 151
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=61.13 E-value=48 Score=24.57 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
.+-.|+..+...+ .+|+.|+|...|++...+-+.|..|..+ |-++..
T Consensus 34 ~~~~iL~~l~~~~-~~~~~~la~~l~~s~~tvs~~l~~L~~~--glv~r~ 80 (145)
T 2a61_A 34 AQFDILQKIYFEG-PKRPGELSVLLGVAKSTVTGLVKRLEAD--GYLTRT 80 (145)
T ss_dssp HHHHHHHHHHHHC-CBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHCCCchhHHHHHHHHHHC--CCeeec
Confidence 4577888888754 6999999999999999999999999987 555544
No 152
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=61.09 E-value=6.1 Score=30.30 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=24.3
Q ss_pred hhhHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023862 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
+.+.+|++| +.+.|+ .+|+.|||.++|++...
T Consensus 8 ~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~Agvs~~t 44 (194)
T 3dpj_A 8 QTRDQIVAAADELFYRQGFAQTSFVDISAAVGISRGN 44 (194)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHH
T ss_pred hHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCChHH
Confidence 455666555 557786 79999999999988754
No 153
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=61.01 E-value=58 Score=25.53 Aligned_cols=61 Identities=18% Similarity=0.213 Sum_probs=41.9
Q ss_pred hHHHHHHHHHc----CCce-ehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcCcchHH
Q 023862 84 RNRAMDAVDAC----NRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRA 147 (276)
Q Consensus 84 ~~rim~Ave~l----g~rv-TvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP~nfRs 147 (276)
-..|.+.+... |.++ |..++|.+-|+|...++++|..|.++ |-++.. .|-=.|+=+.+...
T Consensus 10 ~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~--Gli~~~-~g~G~~V~~~~~~~ 75 (129)
T 2ek5_A 10 ASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEA--GILYKK-RGIGMFVSAQAPAL 75 (129)
T ss_dssp HHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTT--TSEEEE-TTTEEEECTTHHHH
T ss_pred HHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CcEEEe-cCCEEEEecCchHh
Confidence 34444555443 4455 89999999999999999999999877 556544 34445665544433
No 154
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=61.01 E-value=5.4 Score=30.38 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=23.7
Q ss_pred chhhHHHHHH----HHHcCC-ceehhhhhhhcCCCHH
Q 023862 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLN 112 (276)
Q Consensus 81 ~~~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~ 112 (276)
.+.+.+|++| +.+.|+ .+|+.|||.++|++..
T Consensus 9 ~~~r~~Il~aa~~lf~~~G~~~~t~~~IA~~agvs~~ 45 (197)
T 3rd3_A 9 DDTRQHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKG 45 (197)
T ss_dssp -CHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHH
T ss_pred HhHHHHHHHHHHHHHHHCCcccCCHHHHHHHhCCChh
Confidence 3456666655 456787 6999999999998764
No 155
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=60.99 E-value=4.4 Score=31.87 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=24.1
Q ss_pred hhhHHHHHH----HHHcCCceehhhhhhhcCCCHHH
Q 023862 82 DVRNRAMDA----VDACNRRVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~rvTvgDVAa~aGL~l~~ 113 (276)
..+.+|++| +.+.|+.+|+.|||.++|++...
T Consensus 12 ~~r~~Il~aA~~lf~~~G~~~s~~~IA~~agvs~~t 47 (224)
T 1t33_A 12 QAKSQLIAAALAQFGEYGLHATTRDIAALAGQNIAA 47 (224)
T ss_dssp HHHHHHHHHHHHHHHHHGGGSCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCccccHHHHHHHhCCCHHH
Confidence 345556554 56689889999999999988654
No 156
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=60.98 E-value=18 Score=27.49 Aligned_cols=46 Identities=9% Similarity=0.162 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeV 131 (276)
.+-.|+..+.+.+ .+|+.|+|...|++...+-+.|..|..+ |-++.
T Consensus 42 ~~~~iL~~l~~~~-~~t~~eLa~~l~~~~~tvs~~l~~Le~~--Glv~r 87 (154)
T 2qww_A 42 QQLAMINVIYSTP-GISVADLTKRLIITGSSAAANVDGLISL--GLVVK 87 (154)
T ss_dssp HHHHHHHHHHHST-TEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEe
Confidence 4567899998875 5999999999999999999999999886 55554
No 157
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=60.71 E-value=26 Score=27.89 Aligned_cols=61 Identities=20% Similarity=0.261 Sum_probs=48.6
Q ss_pred chhhHHHHHHHHHcCCceehhhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcC
Q 023862 81 ADVRNRAMDAVDACNRRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (276)
Q Consensus 81 ~~~~~rim~Ave~lg~rvTvgDVAa~a-----GL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP 142 (276)
...|..|++++.+.+ -+|+.||.... ++++..+=+.|..|+...=-+=-...+|...|...
T Consensus 18 T~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~~~~~~~Y~~~ 83 (145)
T 3eyy_A 18 TPQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHLGHGAPTYHLA 83 (145)
T ss_dssp CHHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEEET
T ss_pred CHHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEEeCCCceEEEeC
Confidence 456888999999988 89999997765 79999999999999988654433345777788763
No 158
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=60.49 E-value=48 Score=24.39 Aligned_cols=43 Identities=14% Similarity=0.064 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcC
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTD 126 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~ 126 (276)
.+-.++.++.+.+ .+|+.|+|...|++...+-+.|..|..+.-
T Consensus 37 ~~~~iL~~l~~~~-~~t~~ela~~l~~s~~~vs~~l~~Le~~gl 79 (142)
T 2fbi_A 37 QQWRVIRILRQQG-EMESYQLANQACILRPSMTGVLARLERDGI 79 (142)
T ss_dssp HHHHHHHHHHHHC-SEEHHHHHHHTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHCCCHhHHHHHHHHHHHCCC
Confidence 4567899998876 499999999999999999999999998743
No 159
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=60.35 E-value=5.6 Score=30.96 Aligned_cols=30 Identities=10% Similarity=0.188 Sum_probs=22.7
Q ss_pred hhhHHHHHH----HHHcCCc-eehhhhhhhcCCCH
Q 023862 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKL 111 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~r-vTvgDVAa~aGL~l 111 (276)
..+.+|++| +.+.|+. +|+.|||.++|++.
T Consensus 13 ~~r~~Il~aa~~lf~~~G~~~~tv~~Ia~~agvs~ 47 (195)
T 2iu5_A 13 ITQKIIAKAFKDLMQSNAYHQISVSDIMQTAKIRR 47 (195)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHHHhCCCCeeCHHHHHHHhCCCH
Confidence 356666655 5567875 99999999999764
No 160
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=60.29 E-value=36 Score=26.49 Aligned_cols=56 Identities=18% Similarity=0.280 Sum_probs=39.3
Q ss_pred hHHHHHHHHH----cCCce-ehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcC
Q 023862 84 RNRAMDAVDA----CNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (276)
Q Consensus 84 ~~rim~Ave~----lg~rv-TvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP 142 (276)
-..|.+.+.. -|.++ |..++|.+-|+|...++++|..|.++ |-++.. .|-=.|+=+
T Consensus 17 ~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~--Gli~~~-~g~G~~V~~ 77 (126)
T 3by6_A 17 VDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQ--KVIRTI-PGKGTFITG 77 (126)
T ss_dssp HHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE-TTTEEEECS
T ss_pred HHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEe-cCCeEEEcc
Confidence 3444444443 35567 99999999999999999999999876 445443 344455654
No 161
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=60.16 E-value=5.6 Score=30.67 Aligned_cols=33 Identities=9% Similarity=0.254 Sum_probs=24.9
Q ss_pred chhhHHHHHHH----HHcCC-ceehhhhhhhcCCCHHH
Q 023862 81 ADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 81 ~~~~~rim~Av----e~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
...+.+|++|. .+.|+ .+|+.|||.++|++...
T Consensus 15 ~~~r~~Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t 52 (213)
T 2qtq_A 15 PGARDLLLQTASNIMREGDVVDISLSELSLRSGLNSAL 52 (213)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHH
T ss_pred hhHHHHHHHHHHHHHHHcCcccccHHHHHHHhCCChhh
Confidence 45566676654 55687 79999999999988643
No 162
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=60.01 E-value=6.9 Score=30.56 Aligned_cols=30 Identities=17% Similarity=0.319 Sum_probs=23.2
Q ss_pred hhhHHHHH----HHHHcCC-ceehhhhhhhcCCCH
Q 023862 82 DVRNRAMD----AVDACNR-RVTIGDVAGKAGLKL 111 (276)
Q Consensus 82 ~~~~rim~----Ave~lg~-rvTvgDVAa~aGL~l 111 (276)
+.+.+|++ .+.+.|| .+|+.|||.++|++.
T Consensus 14 ~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~ 48 (203)
T 3ccy_A 14 NIRDTIIERAAAMFARQGYSETSIGDIARACECSK 48 (203)
T ss_dssp THHHHHHHHHHHHHHHTCTTTSCHHHHHHHTTCCG
T ss_pred hHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCc
Confidence 45667766 5566787 599999999999764
No 163
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=59.74 E-value=11 Score=31.65 Aligned_cols=51 Identities=22% Similarity=0.409 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee---cCcc
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS---DEGD 136 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS---esGD 136 (276)
..+.+|++.+. .++.|+.|+|.+.|++...+.+-|..|... |-++.. ..|+
T Consensus 20 ~~~~~IL~~L~--~~~~s~~eLA~~lglS~stv~~~l~~Le~~--GlI~~~~~~~~~~ 73 (192)
T 1uly_A 20 DTRRKILKLLR--NKEMTISQLSEILGKTPQTIYHHIEKLKEA--GLVEVKRTEMKGN 73 (192)
T ss_dssp HHHHHHHHHHT--TCCBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEEEEEEETT
T ss_pred HHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEEecccccc
Confidence 56778999997 368999999999999999999999999755 556554 4565
No 164
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=59.64 E-value=7.3 Score=30.14 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=24.9
Q ss_pred chhhHHHHHH----HHHcCC-ceehhhhhhhcCCCHHHH
Q 023862 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (276)
Q Consensus 81 ~~~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~~A 114 (276)
...+.+|++| +.+.|+ .+|+.|||.++|++....
T Consensus 30 ~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~ 68 (218)
T 3dcf_A 30 NDRRTQIIKVATELFREKGYYATSLDDIADRIGFTKPAI 68 (218)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHH
T ss_pred cchHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHH
Confidence 3456666555 556687 599999999999886543
No 165
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=59.59 E-value=7.3 Score=30.33 Aligned_cols=31 Identities=10% Similarity=0.178 Sum_probs=23.1
Q ss_pred hhHHHHH----HHHHcCC-ceehhhhhhhcCCCHHH
Q 023862 83 VRNRAMD----AVDACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 83 ~~~rim~----Ave~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
.|.+|++ .+.+.|+ .+|+.|||.++|++...
T Consensus 5 ~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t 40 (185)
T 2yve_A 5 KKEMILRTAIDYIGEYSLETLSYDSLAEATGLSKSG 40 (185)
T ss_dssp HHHHHHHHHHHHHHHSCSTTCCHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHHHcChhhccHHHHHHHhCCChHH
Confidence 3455554 5566787 69999999999988643
No 166
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=59.45 E-value=7.1 Score=30.28 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=24.2
Q ss_pred hhhHHHHH----HHHHcCCc-eehhhhhhhcCCCHHH
Q 023862 82 DVRNRAMD----AVDACNRR-VTIGDVAGKAGLKLNE 113 (276)
Q Consensus 82 ~~~~rim~----Ave~lg~r-vTvgDVAa~aGL~l~~ 113 (276)
+.+.+|++ .+.+.|+. +|+.|||.++|++...
T Consensus 10 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t 46 (216)
T 3s5r_A 10 NTRELLLDAATTLFAEQGIAATTMAEIAASVGVNPAM 46 (216)
T ss_dssp CHHHHHHHHHHHHHHHHCTTTCCHHHHHHTTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCCHHH
Confidence 34555555 46678976 9999999999998754
No 167
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=59.39 E-value=25 Score=25.99 Aligned_cols=47 Identities=13% Similarity=0.241 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeV 131 (276)
..+-.++..+...+ .+|+.|+|...|++...+-+.|..|..+ |-++.
T Consensus 34 ~~~~~iL~~l~~~~-~~~~~~la~~l~~~~~tvs~~l~~L~~~--gli~r 80 (138)
T 1jgs_A 34 AAQFKVLCSIRCAA-CITPVELKKVLSVDLGALTRMLDRLVCK--GWVER 80 (138)
T ss_dssp HHHHHHHHHHHHHS-SBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHCCChHHHHHHHHHHHHC--CCEEe
Confidence 34567888888765 5899999999999999999999999987 55554
No 168
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=59.33 E-value=16 Score=28.63 Aligned_cols=46 Identities=9% Similarity=0.213 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeV 131 (276)
.+-.|+.++...+ .+|+.|+|...|++...+-+.|..|..+ |-++-
T Consensus 46 ~~~~iL~~L~~~~-~~t~~eLa~~l~is~~tvs~~l~~Le~~--GlV~r 91 (168)
T 2nyx_A 46 PQFRTLVILSNHG-PINLATLATLLGVQPSATGRMVDRLVGA--ELIDR 91 (168)
T ss_dssp HHHHHHHHHHHHC-SEEHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHhCCCHHHHHHHHHHHHHC--CCEEe
Confidence 4567899998866 6999999999999999999999999887 45544
No 169
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=59.00 E-value=58 Score=24.84 Aligned_cols=46 Identities=26% Similarity=0.364 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeV 131 (276)
.+-.|+..+...+ .+|+.|+|...|++...+-+.|..|..+ |.++.
T Consensus 53 ~~~~iL~~l~~~~-~~t~~ela~~l~is~~tvs~~l~~Le~~--Gli~r 98 (162)
T 3cjn_A 53 AKMRALAILSAKD-GLPIGTLGIFAVVEQSTLSRALDGLQAD--GLVRR 98 (162)
T ss_dssp HHHHHHHHHHHSC-SEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHCC-CCCHHHHHHHHCCChhHHHHHHHHHHHC--CCEEe
Confidence 4677899998765 6999999999999999999999999987 45544
No 170
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=58.98 E-value=6.9 Score=30.25 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=25.6
Q ss_pred CchhhHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023862 80 PADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 80 ~~~~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
+...+.+|++| +.+.|+ .+|+.|||.++|++...
T Consensus 12 ~~~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t 50 (212)
T 3knw_A 12 SEAKRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGS 50 (212)
T ss_dssp CHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHH
T ss_pred chhhHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChHH
Confidence 34566777665 556787 79999999999988654
No 171
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=58.96 E-value=6.1 Score=31.01 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=24.6
Q ss_pred hhhHHHHH----HHHHcCC-ceehhhhhhhcCCCHHHH
Q 023862 82 DVRNRAMD----AVDACNR-RVTIGDVAGKAGLKLNEA 114 (276)
Q Consensus 82 ~~~~rim~----Ave~lg~-rvTvgDVAa~aGL~l~~A 114 (276)
+.+.+|++ .+.+.|+ .+|+.|||.++|++....
T Consensus 23 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~ 60 (214)
T 2zb9_A 23 EVRAEVLHAVGELLLTEGTAQLTFERVARVSGVSKTTL 60 (214)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHH
Confidence 34555555 5667787 799999999999987543
No 172
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=58.92 E-value=6.9 Score=30.00 Aligned_cols=32 Identities=16% Similarity=0.085 Sum_probs=24.6
Q ss_pred CchhhHHHHHHHH----HcCCc-eehhhhhhhcCCCH
Q 023862 80 PADVRNRAMDAVD----ACNRR-VTIGDVAGKAGLKL 111 (276)
Q Consensus 80 ~~~~~~rim~Ave----~lg~r-vTvgDVAa~aGL~l 111 (276)
..+.+.+|++|.. +.|+. +|+.|||.++|++.
T Consensus 14 ~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~ 50 (211)
T 3him_A 14 TSKAAARIRAAAIEVFAAKGYGATTTREIAASLDMSP 50 (211)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCc
Confidence 4566777776654 67875 99999999999764
No 173
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=58.52 E-value=21 Score=30.09 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=39.6
Q ss_pred HHHHcCCceehhhhhhhcC--CCHHHHHHHHHHHHhhcC---CceEeecCccEEEEc
Q 023862 90 AVDACNRRVTIGDVAGKAG--LKLNEAQKALQALAADTD---GFLEVSDEGDVLYVF 141 (276)
Q Consensus 90 Ave~lg~rvTvgDVAa~aG--L~l~~Ae~aL~aLAsD~~---GhLeVSesGDIlYvF 141 (276)
.+=-.+.-+|+.++|...| ++.++++++|..|++++. --+++-+.|+- |.|
T Consensus 15 lLf~~~~pvs~~~La~~~~~~~~~~~v~~~l~~L~~~y~~~~rg~~l~~v~~g-y~l 70 (162)
T 1t6s_A 15 LIFSSEEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGG-YRF 70 (162)
T ss_dssp HHHHCSSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTE-EEE
T ss_pred HHHHcCCCCCHHHHHHHhCcCCCHHHHHHHHHHHHHHhhhCCCCEEEEEECCE-EEE
Confidence 3334577799999999999 999999999999999883 44666665543 555
No 174
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=58.48 E-value=5 Score=32.13 Aligned_cols=32 Identities=9% Similarity=0.209 Sum_probs=24.4
Q ss_pred chhhHHHHHHHHHc-----CC-ceehhhhhhhcCCCHH
Q 023862 81 ADVRNRAMDAVDAC-----NR-RVTIGDVAGKAGLKLN 112 (276)
Q Consensus 81 ~~~~~rim~Ave~l-----g~-rvTvgDVAa~aGL~l~ 112 (276)
...+.+|++|+.++ |+ .+|+.|||.+||++..
T Consensus 18 ~~tr~~I~~Aa~~lF~~~~g~~~~tv~~Ia~~Agvs~~ 55 (185)
T 3o60_A 18 QKTQTKLYTVLERFYVEDRTFESISIKDLCEQARVSRA 55 (185)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCCHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHhCCCHH
Confidence 35667788875544 54 6999999999998754
No 175
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=58.42 E-value=7.4 Score=30.05 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=24.3
Q ss_pred chhhHHHHHH----HHHcCCc-eehhhhhhhcCCCHHH
Q 023862 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (276)
Q Consensus 81 ~~~~~rim~A----ve~lg~r-vTvgDVAa~aGL~l~~ 113 (276)
...+.+|++| +.+.|+. +|+.|||.++|++...
T Consensus 6 ~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t 43 (195)
T 2dg7_A 6 PGAEQRLKRAALELYSEHGYDNVTVTDIAERAGLTRRS 43 (195)
T ss_dssp TTHHHHHHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHhcCccccCHHHHHHHhCCCHHH
Confidence 3456666655 5566875 9999999999987643
No 176
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=58.31 E-value=5.2 Score=30.21 Aligned_cols=32 Identities=22% Similarity=0.203 Sum_probs=24.0
Q ss_pred hhhHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023862 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
+.|.+|+++ +.+.|+ .+|+.|||.++|++...
T Consensus 4 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t 40 (170)
T 3egq_A 4 DQSVRIIEAALRLYMKKPPHEVSIEEIAREAKVSKSL 40 (170)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHhcCCccCcHHHHHHHhCCCchh
Confidence 456666665 456788 59999999999988643
No 177
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=58.23 E-value=6.6 Score=29.72 Aligned_cols=31 Identities=13% Similarity=0.279 Sum_probs=23.8
Q ss_pred hhhHHHHHH----HHHcCCc-eehhhhhhhcCCCHH
Q 023862 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLN 112 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~r-vTvgDVAa~aGL~l~ 112 (276)
+.+.+|++| +.+.|+. +|+.|||.++|++..
T Consensus 10 ~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~ 45 (191)
T 3on4_A 10 NTKERILAVAEALIQKDGYNAFSFKDIATAINIKTA 45 (191)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHH
T ss_pred hHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcc
Confidence 456666555 5567875 999999999998864
No 178
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=58.15 E-value=6.4 Score=30.85 Aligned_cols=33 Identities=15% Similarity=0.346 Sum_probs=24.5
Q ss_pred chhhHHHHHH----HHHcCCc-eehhhhhhhcCCCHHH
Q 023862 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (276)
Q Consensus 81 ~~~~~rim~A----ve~lg~r-vTvgDVAa~aGL~l~~ 113 (276)
++.|.+|++| +.+.|+. +|+.|||.++|++...
T Consensus 2 ~~tr~~Il~aA~~lf~~~G~~~~s~~~IA~~Agvs~~t 39 (212)
T 3rh2_A 2 MKTRDKIIQASLELFNEHGERTITTNHIAAHLDISPGN 39 (212)
T ss_dssp CCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHH
T ss_pred chHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHH
Confidence 3455566554 5677887 9999999999988653
No 179
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=58.13 E-value=20 Score=27.11 Aligned_cols=59 Identities=20% Similarity=0.364 Sum_probs=48.1
Q ss_pred HHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcCcc
Q 023862 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNN 144 (276)
Q Consensus 85 ~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP~n 144 (276)
.+.++.++. ..-|.+.|+|+.-||+..++-..++.|-++..=+==+.+.|.-||.=|.-
T Consensus 10 ~~Fi~yIk~-~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~eE 68 (72)
T 1wi9_A 10 TEFINYIKK-SKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPSG 68 (72)
T ss_dssp HHHHHHHHH-CSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCSS
T ss_pred HHHHHHHHH-cCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecHHH
Confidence 445666654 46788999999999999999999999999886666678899999976554
No 180
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=57.98 E-value=7.1 Score=31.03 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHH----cCCc-eehhhhhhhcCCCHHH
Q 023862 82 DVRNRAMDAVDA----CNRR-VTIGDVAGKAGLKLNE 113 (276)
Q Consensus 82 ~~~~rim~Ave~----lg~r-vTvgDVAa~aGL~l~~ 113 (276)
+.+.+|++|..+ .|+. +|+.|||.++|++...
T Consensus 24 ~~r~~Il~aA~~lf~e~G~~~~s~~~IA~~aGvskgt 60 (214)
T 2oer_A 24 ELVASILEAAVQVLASEGAQRFTTARVAERAGVSIGS 60 (214)
T ss_dssp HHHHHHHHHHHHC------CCCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCCCch
Confidence 567888877655 5764 8999999999988643
No 181
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=57.98 E-value=47 Score=32.10 Aligned_cols=63 Identities=19% Similarity=0.130 Sum_probs=49.5
Q ss_pred HHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcCcchHHHhhh
Q 023862 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAA 151 (276)
Q Consensus 86 rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP~nfRs~L~~ 151 (276)
+|.+.+-+. ++.|+.+++..++|+..+++++|..|-+-.=-.-...++|...|.+ |+..++.-
T Consensus 23 ~V~~~Ll~~-G~ltL~~I~~~t~L~~~~Vk~~L~vLIQh~lV~~~~~~~~~~~Y~~--~~~~il~~ 85 (534)
T 2xub_A 23 KIGVHLIRT-GSQPLRVIAHDTGTSLDQVKKALCVLVQHNLVSYQVHKRGVVEYEA--QCSRVLRM 85 (534)
T ss_dssp HHHHHHHHH-CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTTEEEEEE--CHHHHHGG
T ss_pred HHHHHHHhc-CCcCHHHHHHHhCCCHHHHHHHHHHHHhcCCeeEEeCCCCcEEEEE--ChhhHHHH
Confidence 455555553 7899999999999999999999999998765544556678888888 77775544
No 182
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=57.90 E-value=8.1 Score=30.19 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=24.4
Q ss_pred chhhHHHHHH----HHHcCC-ceehhhhhhhcCCCHH
Q 023862 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLN 112 (276)
Q Consensus 81 ~~~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~ 112 (276)
.+.+.+|++| +.+.|+ .+|+.|||.++|++..
T Consensus 29 ~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~aGvs~~ 65 (222)
T 3bru_A 29 SLAHQSLIRAGLEHLTEKGYSSVGVDEILKAARVPKG 65 (222)
T ss_dssp GGHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHH
T ss_pred hhHHHHHHHHHHHHHHHcCCCcCcHHHHHHHhCCCcc
Confidence 4556666555 556787 7999999999998764
No 183
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=57.87 E-value=17 Score=31.55 Aligned_cols=53 Identities=23% Similarity=0.360 Sum_probs=39.0
Q ss_pred hHHHHHHHHHc---CCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEc
Q 023862 84 RNRAMDAVDAC---NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (276)
Q Consensus 84 ~~rim~Ave~l---g~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvF 141 (276)
=.|.++.++-+ +...|+.|+|.++|++...+.+-|..|.+. |.|+-. +| -|.-
T Consensus 20 l~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~~--G~v~~~-~~--~Y~L 75 (265)
T 2ia2_A 20 LARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVEL--GYVATD-GS--AFWL 75 (265)
T ss_dssp HHHHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHH--TSEEES-SS--EEEE
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEec-CC--EEEE
Confidence 34555555544 467999999999999999999999999874 556553 23 4654
No 184
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=57.76 E-value=57 Score=24.37 Aligned_cols=46 Identities=15% Similarity=0.153 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
.+-.++..+...+. |+.|+|...|++...+-+.|..|..+ |-++..
T Consensus 38 ~~~~iL~~l~~~~~--~~~~la~~l~~~~~tvs~~l~~Le~~--Glv~r~ 83 (144)
T 3f3x_A 38 LDFSILKATSEEPR--SMVYLANRYFVTQSAITAAVDKLEAK--GLVRRI 83 (144)
T ss_dssp HHHHHHHHHHHSCE--EHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHCCC--CHHHHHHHHCCChhHHHHHHHHHHHC--CCEEec
Confidence 45688999988877 99999999999999999999999998 666554
No 185
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=57.70 E-value=18 Score=26.73 Aligned_cols=47 Identities=13% Similarity=0.278 Sum_probs=39.5
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeV 131 (276)
..+-.|+..+...+ .+|+.|+|...|++...+-+.|..|.++ |-++.
T Consensus 33 ~~~~~iL~~l~~~~-~~~~~ela~~l~~~~~tvs~~l~~L~~~--gli~r 79 (139)
T 3bja_A 33 YVQFGVIQVLAKSG-KVSMSKLIENMGCVPSNMTTMIQRMKRD--GYVMT 79 (139)
T ss_dssp HHHHHHHHHHHHSC-SEEHHHHHHHCSSCCTTHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHHcC-CcCHHHHHHHHCCChhHHHHHHHHHHHC--CCeee
Confidence 35667899997755 6999999999999999999999999987 55554
No 186
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=57.66 E-value=7 Score=31.57 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=25.2
Q ss_pred chhhHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023862 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 81 ~~~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
.+.+.+|++| +.+.|+ .+|+.|||.++|++...
T Consensus 43 ~~~r~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~~t 80 (236)
T 3q0w_A 43 DDRELAILATAENLLEDRPLADISVDDLAKGAGISRPT 80 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCcHHH
Confidence 3556666665 456688 89999999999988654
No 187
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=57.62 E-value=6.1 Score=30.70 Aligned_cols=31 Identities=29% Similarity=0.421 Sum_probs=23.2
Q ss_pred hhhHHHHHH----HHHcCC-ceehhhhhhhcCCCHH
Q 023862 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLN 112 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~ 112 (276)
..+.+|++| +.+.|+ .+|+.|||.++|++..
T Consensus 9 ~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~ 44 (193)
T 2dg8_A 9 QRRERILAATLDLIAEEGIARVSHRRIAQRAGVPLG 44 (193)
T ss_dssp THHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTH
T ss_pred hHHHHHHHHHHHHHHHhChhhccHHHHHHHhCCCch
Confidence 445566554 566787 7999999999998754
No 188
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=57.57 E-value=6.1 Score=30.03 Aligned_cols=32 Identities=13% Similarity=0.258 Sum_probs=21.4
Q ss_pred chhhHHHHHH----HHHcCCc-eehhhhhhhcCCCHH
Q 023862 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLN 112 (276)
Q Consensus 81 ~~~~~rim~A----ve~lg~r-vTvgDVAa~aGL~l~ 112 (276)
.+.+.+|++| +.+.|+. +|+.|||.++|++..
T Consensus 11 ~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~ 47 (199)
T 3on2_A 11 GSLRRVLLARAESTLEKDGVDGLSLRQLAREAGVSHA 47 (199)
T ss_dssp CCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHhcChhhhhHHHHHHHhCCChH
Confidence 3456666655 4567886 899999999998753
No 189
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=57.34 E-value=22 Score=26.99 Aligned_cols=43 Identities=12% Similarity=0.058 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~ 125 (276)
..+-.|+..+...+ .+|+.|+|...|++...+-+.|..|..+.
T Consensus 47 ~~~~~iL~~l~~~~-~~t~~ela~~l~~s~~tvs~~l~~Le~~g 89 (153)
T 2pex_A 47 YPQYLVMLVLWETD-ERSVSEIGERLYLDSATLTPLLKRLQAAG 89 (153)
T ss_dssp HHHHHHHHHHHHSC-SEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCC-CcCHHHHHHHhCCCcccHHHHHHHHHHCC
Confidence 35677899998754 69999999999999999999999999873
No 190
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=57.33 E-value=7.6 Score=30.09 Aligned_cols=30 Identities=7% Similarity=0.058 Sum_probs=22.1
Q ss_pred hhhHHHHH----HHHHcCCc-eehhhhhhhcCCCH
Q 023862 82 DVRNRAMD----AVDACNRR-VTIGDVAGKAGLKL 111 (276)
Q Consensus 82 ~~~~rim~----Ave~lg~r-vTvgDVAa~aGL~l 111 (276)
+.+.+|++ .+.+.|+. +|+.|||.++|++.
T Consensus 19 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~ 53 (216)
T 3qqa_A 19 ARQEKIKAVALELFLTKGYQETSLSDIIKLSGGSY 53 (216)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHcChhhCCHHHHHHHhCCCH
Confidence 34555554 45677876 99999999999763
No 191
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=57.19 E-value=7.8 Score=30.03 Aligned_cols=32 Identities=13% Similarity=0.230 Sum_probs=24.1
Q ss_pred chhhHHHHHH----HHHcCC-ceehhhhhhhcCCCHH
Q 023862 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLN 112 (276)
Q Consensus 81 ~~~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~ 112 (276)
...+.+|++| +.+.|+ .+|+.|||.++|++..
T Consensus 16 ~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~ 52 (207)
T 2rae_A 16 STTQDRISTVGIELFTEQGFDATSVDEVAEASGIARR 52 (207)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTTSCHHHHHHHTTSCHH
T ss_pred HhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcc
Confidence 4456666665 556787 5999999999998764
No 192
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=57.10 E-value=6.5 Score=30.83 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=23.7
Q ss_pred hhhHHHHHH----HHHcCC-ceehhhhhhhcCCCHH
Q 023862 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLN 112 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~ 112 (276)
+.+.+|++| +.+.|| .+|+.|||.++|++..
T Consensus 12 ~~r~~Il~aA~~lf~~~Gy~~ts~~~IA~~agvs~g 47 (205)
T 1rkt_A 12 KRQAEILEAAKTVFKRKGFELTTMKDVVEESGFSRG 47 (205)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCCcc
Confidence 455667665 456787 6999999999998754
No 193
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=57.07 E-value=65 Score=24.86 Aligned_cols=58 Identities=14% Similarity=0.256 Sum_probs=40.5
Q ss_pred hhhHHHHHHHHHc----CCce-ehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcC
Q 023862 82 DVRNRAMDAVDAC----NRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (276)
Q Consensus 82 ~~~~rim~Ave~l----g~rv-TvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP 142 (276)
.+-..|.+.+... |.++ |..++|.+-|+|...++++|..|.++ |-|+.. .|-=.|+=+
T Consensus 17 ~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~--G~i~~~-~g~G~~V~~ 79 (125)
T 3neu_A 17 QISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERA--GYIYAK-RGMGSFVTS 79 (125)
T ss_dssp HHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE-TTTEEEECC
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CeEEEe-cCCEEEEec
Confidence 3445555555543 4455 69999999999999999999999986 456544 333355544
No 194
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=57.07 E-value=59 Score=24.40 Aligned_cols=47 Identities=6% Similarity=0.164 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
.+-.|+.++...+ .+|+.|+|...|++...+-+.|..|..+ |.++..
T Consensus 38 ~~~~iL~~l~~~~-~~t~~ela~~l~~s~~tvs~~l~~Le~~--glv~r~ 84 (155)
T 1s3j_A 38 AQLFVLASLKKHG-SLKVSEIAERMEVKPSAVTLMADRLEQK--NLIART 84 (155)
T ss_dssp HHHHHHHHHHHHS-EEEHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEeec
Confidence 3567888888755 6999999999999999999999999887 566554
No 195
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=56.99 E-value=8.4 Score=29.30 Aligned_cols=33 Identities=6% Similarity=0.129 Sum_probs=22.8
Q ss_pred chhhHHHHH----HHHHcCC-ceehhhhhhhcCCCHHH
Q 023862 81 ADVRNRAMD----AVDACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 81 ~~~~~rim~----Ave~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
|+.+.+|++ .+.+.|+ .+|+.|||.++|++...
T Consensus 1 ~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t 38 (194)
T 3bqz_B 1 MNLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGN 38 (194)
T ss_dssp ---CHHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCHHH
T ss_pred CcHHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCCchh
Confidence 344555555 4566786 59999999999998754
No 196
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=56.87 E-value=3.4 Score=33.80 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=24.7
Q ss_pred hhhHHHHHH----HHHcCC-ceehhhhhhhcCCCHHHH
Q 023862 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~~A 114 (276)
+.+.+|++| +.+.|+ .+|+.|||.++|++....
T Consensus 18 ~~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tl 55 (251)
T 3npi_A 18 VSTDTVLDIALSLFSELGFSDAKLEAIAKKSGMSKRMI 55 (251)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccccCHHHHHHHHCCCHHHH
Confidence 455666655 455687 799999999999987543
No 197
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=56.86 E-value=20 Score=26.85 Aligned_cols=48 Identities=6% Similarity=0.093 Sum_probs=40.3
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
..+-.++..+... +.+|+.|+|...|++...+-+.|..|..+ |-++-.
T Consensus 37 ~~~~~iL~~l~~~-~~~t~~eLa~~l~~~~~~vs~~l~~L~~~--Glv~r~ 84 (143)
T 3oop_A 37 PEQWSVLEGIEAN-EPISQKEIALWTKKDTPTVNRIVDVLLRK--ELIVRE 84 (143)
T ss_dssp HHHHHHHHHHHHH-SSEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHHc-CCcCHHHHHHHHCCCHhhHHHHHHHHHHC--CCeecc
Confidence 4557788888877 67999999999999999999999999886 556543
No 198
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=56.85 E-value=7.9 Score=30.12 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=26.0
Q ss_pred chhhHHHHHHH----HHcCC-ceehhhhhhhcCCCHHHH
Q 023862 81 ADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNEA 114 (276)
Q Consensus 81 ~~~~~rim~Av----e~lg~-rvTvgDVAa~aGL~l~~A 114 (276)
...+.+|++|. .+.|| .+|+.|||.++|++....
T Consensus 11 ~~~r~~Il~aA~~lf~e~G~~~~t~~~IA~~agvsk~tl 49 (192)
T 2fq4_A 11 IETQKAILSASYELLLESGFKAVTVDKIAERAKVSKATI 49 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCcccccHHHHHHHcCCCHHHH
Confidence 35567776664 55786 799999999999987654
No 199
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=56.81 E-value=3.5 Score=31.77 Aligned_cols=33 Identities=9% Similarity=0.205 Sum_probs=24.9
Q ss_pred chhhHHHHHHH----HHcCC-ceehhhhhhhcCCCHHH
Q 023862 81 ADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 81 ~~~~~rim~Av----e~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
.+.+.+|++|. .+.|+ .+|+.|||.++|++...
T Consensus 13 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t 50 (215)
T 3e7q_A 13 EQRKALLIEATLACLKRHGFQGASVRKICAEAGVSVGL 50 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHH
Confidence 34566776665 45687 89999999999988643
No 200
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=56.67 E-value=5 Score=34.31 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.0
Q ss_pred ceehhhhhhhcCCCHHHHHHHHHH
Q 023862 97 RVTIGDVAGKAGLKLNEAQKALQA 120 (276)
Q Consensus 97 rvTvgDVAa~aGL~l~~Ae~aL~a 120 (276)
++|+.|||.++|+|...+-++|+.
T Consensus 2 ~~ti~dvA~~agVS~~TVSrvln~ 25 (332)
T 2hsg_A 2 NVTIYDVAREASVSMATVSRVVNG 25 (332)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcC
Confidence 589999999999999998887753
No 201
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=56.58 E-value=7.8 Score=30.60 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=23.9
Q ss_pred hhhHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023862 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
+.+.+|++| +.+.|+ .+|+.|||.++|++...
T Consensus 8 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t 44 (202)
T 2d6y_A 8 ATKARIFEAAVAEFARHGIAGARIDRIAAEARANKQL 44 (202)
T ss_dssp CHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHH
Confidence 445666555 455687 89999999999987643
No 202
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=56.56 E-value=14 Score=32.73 Aligned_cols=69 Identities=22% Similarity=0.393 Sum_probs=49.5
Q ss_pred ccccCCCCchhhHHHHHHHHHcCCceehhhhhhhcCC---CHHHHHHHHHHHHhhcCCceEee-----c-Cc--cEEEEc
Q 023862 73 IVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGL---KLNEAQKALQALAADTDGFLEVS-----D-EG--DVLYVF 141 (276)
Q Consensus 73 ~v~~~~l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL---~l~~Ae~aL~aLAsD~~GhLeVS-----e-sG--DIlYvF 141 (276)
.+.+--|-..++-.|.+++.+.|+..|+.|+|.++|+ +..-.++=|+.|++ -|-|+.. + +| +-.|.-
T Consensus 21 ~~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~--~gll~~~~~~~~~~~g~~~~~y~~ 98 (358)
T 1zg3_A 21 FVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTH--NGFFAKTIVKGKEGDEEEEIAYSL 98 (358)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHH--TTSEEEEEECCSSSSCCCEEEEEE
T ss_pred HHHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHHhh--CCcEEEecccccccCCCCCCEEeC
Confidence 3444445566777888898887778999999999999 57778888888876 4566655 2 23 456765
Q ss_pred Cc
Q 023862 142 PN 143 (276)
Q Consensus 142 P~ 143 (276)
.+
T Consensus 99 t~ 100 (358)
T 1zg3_A 99 TP 100 (358)
T ss_dssp CH
T ss_pred CH
Confidence 43
No 203
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=56.56 E-value=6.9 Score=30.58 Aligned_cols=31 Identities=19% Similarity=0.167 Sum_probs=23.0
Q ss_pred hhhHHHHHH----HHHcCCc-eehhhhhhhcCCCHH
Q 023862 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLN 112 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~r-vTvgDVAa~aGL~l~ 112 (276)
+.+.+|++| +.+.||. +|+.|||.++|++.-
T Consensus 9 ~~r~~Il~aA~~lf~~~G~~~~t~~~Ia~~Agvs~g 44 (204)
T 3anp_C 9 RRRERIFRAAMELFRNRGFQETTATEIAKAAHVSRG 44 (204)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHHcCcccccHHHHHHHcCCchH
Confidence 345666555 4567874 999999999998754
No 204
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=56.47 E-value=4.5 Score=31.04 Aligned_cols=47 Identities=17% Similarity=0.321 Sum_probs=36.6
Q ss_pred hHHHHHHHHHcCCce-ehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeec
Q 023862 84 RNRAMDAVDACNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (276)
Q Consensus 84 ~~rim~Ave~lg~rv-TvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSe 133 (276)
+.+|+..+ +-|.++ |..++|.+-|++...++++|..|.++ |-++...
T Consensus 30 ~~~I~~~l-~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~--GlI~~~~ 77 (102)
T 2b0l_A 30 IEHIFEEL-DGNEGLLVASKIADRVGITRSVIVNALRKLESA--GVIESRS 77 (102)
T ss_dssp HHHHTTSS-BTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEEE
T ss_pred HHHHHhhh-cCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEEe
Confidence 55555222 345666 99999999999999999999999987 4576665
No 205
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=56.46 E-value=8.5 Score=29.73 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=25.6
Q ss_pred CchhhHHHHHHH----HHcCC-ceehhhhhhhcCCCHHH
Q 023862 80 PADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 80 ~~~~~~rim~Av----e~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
..+.+.+|++|. .+.|+ .+|+.|||.++|++...
T Consensus 16 ~~~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t 54 (212)
T 1pb6_A 16 VSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTN 54 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHCCChhH
Confidence 345677777764 45586 78999999999988654
No 206
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=56.36 E-value=7.2 Score=29.71 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=22.5
Q ss_pred hhHHHHHH----HHHcCCc-eehhhhhhhcCCCHH
Q 023862 83 VRNRAMDA----VDACNRR-VTIGDVAGKAGLKLN 112 (276)
Q Consensus 83 ~~~rim~A----ve~lg~r-vTvgDVAa~aGL~l~ 112 (276)
.+.+|++| +.+.|+. +|+.|||.++|++..
T Consensus 9 ~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~ 43 (183)
T 1zk8_A 9 TLQKIVETAAEIADANGVQEVTLASLAQTLGVRSP 43 (183)
T ss_dssp CHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHhcCccccCHHHHHHHcCCCch
Confidence 45666555 4556875 999999999998764
No 207
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=56.33 E-value=28 Score=26.66 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=46.3
Q ss_pred HHHHHHHHcCCceehhhhhhhcCC-CHHHHHHHHHHHHhhcCCceEeecCccEEEEcC
Q 023862 86 RAMDAVDACNRRVTIGDVAGKAGL-KLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (276)
Q Consensus 86 rim~Ave~lg~rvTvgDVAa~aGL-~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP 142 (276)
.|-+++... ...|+.+++..+|+ +-.++..||==||.+ +.+++.++++.+|+..
T Consensus 14 ~VW~~L~~~-~~~s~~el~k~t~l~~d~el~lAiGWLaRE--dKI~~~~~~~~l~v~l 68 (77)
T 2l01_A 14 QIWEALNGT-EGLTQKQIKKATKLKADKDFFLGLGWLLRE--DKVVTSEVEGEIFVKL 68 (77)
T ss_dssp HHHHHHTTS-SCEEHHHHHHHHTCSCHHHHHHHHHHHHHT--TCEEEEEETTEEEEEE
T ss_pred HHHHHHhcC-CCCCHHHHHHHHCCCCHHHHHHHHHHHhhc--CceEEEeeCCEEEEEe
Confidence 345666665 58999999999999 999999999999876 7899999999999873
No 208
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=56.23 E-value=20 Score=27.38 Aligned_cols=47 Identities=13% Similarity=0.239 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
.+-.|+..+... +.+|+.|+|...|++...+-+.|..|... |-++..
T Consensus 50 ~~~~iL~~l~~~-~~~t~~ela~~l~is~~tvs~~l~~Le~~--glv~r~ 96 (162)
T 2fa5_A 50 PEWRVITILALY-PGSSASEVSDRTAMDKVAVSRAVARLLER--GFIRRE 96 (162)
T ss_dssp HHHHHHHHHHHS-TTCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEC-
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEeee
Confidence 456788888874 57999999999999999999999999988 666543
No 209
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=56.11 E-value=7.4 Score=29.75 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=25.2
Q ss_pred chhhHHHHHH----HHHcCCc-eehhhhhhhcCCCHHH
Q 023862 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (276)
Q Consensus 81 ~~~~~rim~A----ve~lg~r-vTvgDVAa~aGL~l~~ 113 (276)
.+.+.+|++| +.+.|+. +|+.|||.++|++...
T Consensus 16 ~~~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t 53 (208)
T 3cwr_A 16 AVVRESIVGAAQRLLSSGGAAAMTMEGVASEAGIAKKT 53 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHhccHHHHHHHhCCCHHH
Confidence 4566777655 4567875 9999999999988754
No 210
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=55.87 E-value=61 Score=24.20 Aligned_cols=64 Identities=13% Similarity=0.091 Sum_probs=52.8
Q ss_pred ccCCCCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeec-CccEE
Q 023862 75 ESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD-EGDVL 138 (276)
Q Consensus 75 ~~~~l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSe-sGDIl 138 (276)
-.+.|...+.+.-+..+.+.=-++|+..+|..-||+.+++|+-|..+..+..=+=.... +|-|.
T Consensus 8 ~~~~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~ 72 (84)
T 1ufm_A 8 GSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVH 72 (84)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEE
T ss_pred cHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEE
Confidence 35667788888888999999899999999999999999999999999988765555565 34443
No 211
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=55.80 E-value=6.3 Score=31.26 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=23.9
Q ss_pred hhhHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023862 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
+.+.+|++| +.+.|| .+|+.|||.++|++...
T Consensus 8 ~~r~~Il~aA~~lf~~~Gy~~~s~~~IA~~AGvs~gt 44 (206)
T 1vi0_A 8 PKYMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGT 44 (206)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCChhH
Confidence 345666555 566788 59999999999988643
No 212
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=55.71 E-value=26 Score=27.33 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=30.3
Q ss_pred cCCce-ehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023862 94 CNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (276)
Q Consensus 94 lg~rv-TvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeV 131 (276)
-|-++ |..++|.+-|+|...+++||..|.++ |-++.
T Consensus 34 pG~~LPser~La~~~gVSr~tVReAl~~L~~e--Glv~~ 70 (134)
T 4ham_A 34 EGEKILSIREFASRIGVNPNTVSKAYQELERQ--EVIIT 70 (134)
T ss_dssp TTCEECCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred CCCCCccHHHHHHHHCCCHHHHHHHHHHHHHC--CcEEE
Confidence 46677 88899999999999999999999886 44543
No 213
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=55.64 E-value=3.8 Score=31.74 Aligned_cols=30 Identities=23% Similarity=0.484 Sum_probs=23.4
Q ss_pred hHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023862 84 RNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 84 ~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
+.+|++| +.+.|+ .+|+.|||.++|++...
T Consensus 10 r~~Il~AA~~l~~~~G~~~~t~~~IA~~agvs~~t 44 (195)
T 3frq_A 10 DDEVLEAATVVLKRCGPIEFTLSGVAKEVGLSRAA 44 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHhhCcccCCHHHHHHHhCCCHHH
Confidence 5666555 467788 79999999999988643
No 214
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=55.61 E-value=11 Score=28.97 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=23.9
Q ss_pred chhhHHHHHH----HHHcCC-ceehhhhhhhcCCCHH
Q 023862 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLN 112 (276)
Q Consensus 81 ~~~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~ 112 (276)
...+.+|++| +.+.|+ .+|+.|||.++|++..
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~ 46 (203)
T 3b81_A 10 NNKRTELANKIWDIFIANGYENTTLAFIINKLGISKG 46 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCch
Confidence 4456666554 556787 5999999999998864
No 215
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=55.44 E-value=4.4 Score=31.04 Aligned_cols=33 Identities=9% Similarity=0.191 Sum_probs=24.6
Q ss_pred chhhHHHHHH----HHHcCCc-eehhhhhhhcCCCHHH
Q 023862 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (276)
Q Consensus 81 ~~~~~rim~A----ve~lg~r-vTvgDVAa~aGL~l~~ 113 (276)
.+.+.+|++| +.+.|+. +|+.|||.++|++...
T Consensus 13 ~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t 50 (191)
T 4aci_A 13 TNSRQEILEGARRCFAEHGYEGATVRRLEEATGKSRGA 50 (191)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCchH
Confidence 3456666555 6677875 9999999999988754
No 216
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=55.42 E-value=7.9 Score=31.25 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=24.2
Q ss_pred hhhHHHHH----HHHHcCCc-eehhhhhhhcCCCHHH
Q 023862 82 DVRNRAMD----AVDACNRR-VTIGDVAGKAGLKLNE 113 (276)
Q Consensus 82 ~~~~rim~----Ave~lg~r-vTvgDVAa~aGL~l~~ 113 (276)
..+.+|++ .+.+.|+. +|+.|||.++|++...
T Consensus 39 ~~r~~Il~AA~~lf~e~G~~~~tv~~IA~~AGvs~~t 75 (214)
T 2guh_A 39 QSRSLIVDAAGRAFATRPYREITLKDIAEDAGVSAPL 75 (214)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHH
T ss_pred hHHHHHHHHHHHHHHHcChhhcCHHHHHHHhCCCHHH
Confidence 45556655 45678886 9999999999988654
No 217
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=55.41 E-value=7.9 Score=29.24 Aligned_cols=32 Identities=6% Similarity=0.161 Sum_probs=24.2
Q ss_pred hhhHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023862 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
..+.+|++| +.+.|+ .+|+.|||.++|++...
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t 44 (194)
T 2g7s_A 8 SKADDILQCARTLIIRGGYNSFSYADISQVVGIRNAS 44 (194)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHH
T ss_pred hhHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchH
Confidence 556666554 566786 59999999999988654
No 218
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=55.30 E-value=7.5 Score=33.61 Aligned_cols=65 Identities=18% Similarity=0.287 Sum_probs=14.2
Q ss_pred CCceehhhhhhhcCCCHHHHHHHHHH--------------HHhhcC-------CceEeecCccEEEEcCcchHHHhhhhh
Q 023862 95 NRRVTIGDVAGKAGLKLNEAQKALQA--------------LAADTD-------GFLEVSDEGDVLYVFPNNYRAKLAAKS 153 (276)
Q Consensus 95 g~rvTvgDVAa~aGL~l~~Ae~aL~a--------------LAsD~~-------GhLeVSesGDIlYvFP~nfRs~L~~Ks 153 (276)
..++|+.|||.++|+|...+-++|+. .|.+.| -.|.-..++-|.++.|. +.+.+
T Consensus 4 ~~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~-----~~~~~ 78 (333)
T 3jvd_A 4 SAKSSLKEVAELAGVGYATASRALSGKGYVSPQTREKVQAAAKELNYVPNQLAKALREHRSALVGVIVPD-----LSNEY 78 (333)
T ss_dssp ------------------------------------------------------------CCEEEEEESC-----SSSHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHCCCcCHHHHHhhcCCCCEEEEEeCC-----CcChH
Confidence 35799999999999999999888862 222111 12445567778888875 23444
Q ss_pred HHHhHHHHHHH
Q 023862 154 FRLKVEPVIDK 164 (276)
Q Consensus 154 ~r~rl~~~~~k 164 (276)
+..-++.+-+.
T Consensus 79 ~~~~~~gi~~~ 89 (333)
T 3jvd_A 79 YSESLQTIQQD 89 (333)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444333333
No 219
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=55.27 E-value=7.7 Score=29.55 Aligned_cols=31 Identities=19% Similarity=0.357 Sum_probs=22.6
Q ss_pred hhHHHHH----HHHHcCCc-eehhhhhhhcCCCHHH
Q 023862 83 VRNRAMD----AVDACNRR-VTIGDVAGKAGLKLNE 113 (276)
Q Consensus 83 ~~~rim~----Ave~lg~r-vTvgDVAa~aGL~l~~ 113 (276)
.+.+|++ .+.+.|+. +|+.|||.++|++...
T Consensus 8 ~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t 43 (199)
T 3qbm_A 8 TRERVVAQAAALFNVSGYAGTAISDIMAATGLEKGG 43 (199)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHhCcCcCCHHHHHHHhCCCccH
Confidence 4455544 45667865 8999999999988643
No 220
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=55.26 E-value=23 Score=31.16 Aligned_cols=68 Identities=13% Similarity=0.326 Sum_probs=48.0
Q ss_pred ccccCCCCchhhHHHHHHHHHcCCceehhhhhhhcCCC---HHHHHHHHHHHHhhcCCceEeecCccEEEEcC
Q 023862 73 IVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLK---LNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (276)
Q Consensus 73 ~v~~~~l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~---l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP 142 (276)
.+.+--|...++-.|.+++.+.++..|+.|+|.++|++ ..-.++=|+.|++ -|.|+..++|+=.|.-.
T Consensus 27 ~~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~--~gll~~~~~~~~~y~~t 97 (352)
T 1fp2_A 27 FIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAH--NGFFEIITKEEESYALT 97 (352)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHH--TTSEEEEESSSEEEEEC
T ss_pred HHHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHHHh--CCeEEEecCCCCeEeCC
Confidence 34444455566777888888877789999999999995 6677788888876 56676553233456543
No 221
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=55.17 E-value=7.5 Score=30.64 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=25.0
Q ss_pred chhhHHHHHHH----HHcCCc-eehhhhhhhcCCCHHH
Q 023862 81 ADVRNRAMDAV----DACNRR-VTIGDVAGKAGLKLNE 113 (276)
Q Consensus 81 ~~~~~rim~Av----e~lg~r-vTvgDVAa~aGL~l~~ 113 (276)
.+.+.+|++|. .+.||. +|+.|||.++|++...
T Consensus 11 ~~~r~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvsk~t 48 (211)
T 3bhq_A 11 ARKDREIIQAATAAFISKGYDGTSMEEIATKAGASKQT 48 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHH
T ss_pred HhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHH
Confidence 45566776654 567886 9999999999988643
No 222
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=55.16 E-value=8.2 Score=27.95 Aligned_cols=31 Identities=6% Similarity=0.220 Sum_probs=25.4
Q ss_pred hHHHHHHHHHcCCceehhhhhhhcCCCHHHHHH
Q 023862 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQK 116 (276)
Q Consensus 84 ~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~ 116 (276)
+.+|..++++. +.|+.++|.++|++.....+
T Consensus 11 ~~ri~~~l~~~--glT~~~LA~~~Gvs~stls~ 41 (74)
T 1neq_A 11 RADVIAGLKKR--KLSLSALSRQFGYAPTTLAN 41 (74)
T ss_dssp HHHHHHHHHTT--SCCHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHCcCHHHHHH
Confidence 67888888855 48999999999999776643
No 223
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=55.15 E-value=36 Score=26.26 Aligned_cols=55 Identities=15% Similarity=0.317 Sum_probs=46.6
Q ss_pred HHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcCc
Q 023862 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (276)
Q Consensus 86 rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP~ 143 (276)
.|-+++...+ ..|+.+++.++|++-.++..||==||.+ +.+++.++...+|+...
T Consensus 12 ~VW~~L~~~~-~~s~~el~k~t~l~d~el~lAIGWLaRE--dKI~~~~~~~~l~v~L~ 66 (82)
T 2l02_A 12 KVWHALNEAD-GISIPELARKVNLSVESTALAVGWLARE--NKVVIERKNGLIEIYNE 66 (82)
T ss_dssp HHHHHHHHCC-SBCHHHHHHHHTCCHHHHHHHHHHHHTT--TSEEEEEETTEEEEEEG
T ss_pred HHHHHHhccC-CCCHHHHHHHhCCCHHHHHHHHHHHhcc--CceeEEeeCCEEEEEEc
Confidence 4567777765 9999999999999999999999999876 68888888888888643
No 224
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=54.47 E-value=14 Score=27.84 Aligned_cols=46 Identities=7% Similarity=0.131 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeV 131 (276)
.+-.++..+...+ .+|++|+|...|++...+-+.|..|..+ |-++-
T Consensus 38 ~~~~vL~~l~~~~-~~t~~eLa~~l~~~~~tvs~~l~~L~~~--Glv~r 83 (142)
T 3ech_A 38 PDVHVLKLIDEQR-GLNLQDLGRQMCRDKALITRKIRELEGR--NLVRR 83 (142)
T ss_dssp HHHHHHHHHHHTT-TCCHHHHHHHHC---CHHHHHHHHHHHT--TSEEC
T ss_pred HHHHHHHHHHhCC-CcCHHHHHHHhCCCHHHHHHHHHHHHHC--CCEee
Confidence 4567899998876 6999999999999999999999999886 44443
No 225
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=54.44 E-value=8.1 Score=30.25 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=24.1
Q ss_pred hhhHHHHHHH----HHcCCc-eehhhhhhhcCCCHHH
Q 023862 82 DVRNRAMDAV----DACNRR-VTIGDVAGKAGLKLNE 113 (276)
Q Consensus 82 ~~~~rim~Av----e~lg~r-vTvgDVAa~aGL~l~~ 113 (276)
+.+.+|++|. .+.||. +|+.|||.++|++...
T Consensus 14 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t 50 (204)
T 2ibd_A 14 GRRTELLDIAATLFAERGLRATTVRDIADAAGILSGS 50 (204)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTSCHHH
T ss_pred hhHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCchh
Confidence 5566676554 567875 8999999999988643
No 226
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=54.32 E-value=7.5 Score=31.06 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=25.1
Q ss_pred CchhhHHHHHH----HHHcCCc-eehhhhhhhcCCCHHH
Q 023862 80 PADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (276)
Q Consensus 80 ~~~~~~rim~A----ve~lg~r-vTvgDVAa~aGL~l~~ 113 (276)
..+.+.+|++| +.+.|+. +|+.|||.++|++...
T Consensus 33 ~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~AGvs~~t 71 (221)
T 3g7r_A 33 PSEARARLLGTATRIFYAEGIHSVGIDRITAEAQVTRAT 71 (221)
T ss_dssp -CHHHHHHHHHHHHHHHHHCSTTSCHHHHHHHHTCCHHH
T ss_pred chhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHH
Confidence 34566777665 4567875 9999999999988654
No 227
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=54.27 E-value=7.8 Score=31.05 Aligned_cols=31 Identities=29% Similarity=0.327 Sum_probs=23.8
Q ss_pred hhHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023862 83 VRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 83 ~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
.+.+|++| +.+.|+ .+|+.|||.++|++...
T Consensus 29 ~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~t 64 (217)
T 3hta_A 29 RRQRIIDAAIRVVGQKGIAGLSHRTVAAEADVPLGS 64 (217)
T ss_dssp HHHHHHHHHHHHHHHHTGGGCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHcCCCcch
Confidence 55666555 566788 79999999999988643
No 228
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=53.90 E-value=25 Score=26.90 Aligned_cols=58 Identities=14% Similarity=0.199 Sum_probs=44.9
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcC----CCHHHHHHHHHHHHhhcCCceEeecCccEEEEcC
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAG----LKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aG----L~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP 142 (276)
..+..||+++-+.| .+|+.||+.+.+ ++...+-.-|..|..+ |-++...+|.--..+|
T Consensus 35 ~~e~~VL~~L~~~~-~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~K--GlV~R~~~gR~~~Y~p 96 (99)
T 2k4b_A 35 NAELIVMRVIWSLG-EARVDEIYAQIPQELEWSLATVKTLLGRLVKK--EMLSTEKEGRKFVYRP 96 (99)
T ss_dssp CSCSHHHHHHHHHS-CEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHT--TSCEEEEETTEEEEEC
T ss_pred HHHHHHHHHHHhCC-CCCHHHHHHHHhcccCCCHhhHHHHHHHHHHC--CCEEEEeCCCEEEEEE
Confidence 35678999999855 799999999987 5688898889988875 5677777776544444
No 229
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=53.57 E-value=25 Score=27.27 Aligned_cols=53 Identities=19% Similarity=0.195 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcC----CCHHHHHHHHHHHHhhcCCceEeecCcc
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAG----LKLNEAQKALQALAADTDGFLEVSDEGD 136 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aG----L~l~~Ae~aL~aLAsD~~GhLeVSesGD 136 (276)
..+..||+++-+.++.+|+.|||...+ ++...+-..|..|..+ |.++...+|.
T Consensus 9 ~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~k--Glv~r~~~~r 65 (138)
T 2g9w_A 9 DLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKK--NLVLQIRDDR 65 (138)
T ss_dssp HHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHT--TSEEEEC---
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHC--CCEEEEecCC
Confidence 457889999998767899999999997 8999999999999875 6677666665
No 230
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=53.40 E-value=24 Score=27.26 Aligned_cols=47 Identities=17% Similarity=0.340 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
.+-.|+..+...+ .+|+.|+|...|++...+-+.|..|..+ |-++..
T Consensus 54 ~q~~vL~~l~~~~-~~t~~eLa~~l~~~~~~vs~~l~~Le~~--Glv~r~ 100 (161)
T 3e6m_A 54 PKLRLLSSLSAYG-ELTVGQLATLGVMEQSTTSRTVDQLVDE--GLAARS 100 (161)
T ss_dssp HHHHHHHHHHHHS-EEEHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEEC
T ss_pred HHHHHHHHHHhCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEee
Confidence 4677899988876 7999999999999999999999999876 555544
No 231
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=53.37 E-value=7.3 Score=31.79 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=23.0
Q ss_pred hhHHHHHH----HHHcCCceehhhhhhhcCCCHHH
Q 023862 83 VRNRAMDA----VDACNRRVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 83 ~~~rim~A----ve~lg~rvTvgDVAa~aGL~l~~ 113 (276)
.+++|+++ +.+.| .+|+.|||.++|++...
T Consensus 12 ~r~~Il~aA~~l~~~~G-~~s~~~IA~~aGvs~~t 45 (213)
T 2g7g_A 12 DRERIAEAALELVDRDG-DFRMPDLARHLNVQVSS 45 (213)
T ss_dssp CHHHHHHHHHHHHHHHS-SCCHHHHHHHTTSCHHH
T ss_pred CHHHHHHHHHHHHHHcC-CCCHHHHHHHhCCCHhH
Confidence 35566554 55569 99999999999988753
No 232
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=53.32 E-value=14 Score=27.33 Aligned_cols=40 Identities=13% Similarity=0.096 Sum_probs=31.7
Q ss_pred HHHHHHHHHcC---------CceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023862 85 NRAMDAVDACN---------RRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (276)
Q Consensus 85 ~rim~Ave~lg---------~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD 124 (276)
|++.+.+.+.| +..|+.|+|..-|+++++.-++|+++.+.
T Consensus 17 P~~~~vf~~~G~~C~gC~~a~~~tLeeA~~~hgiD~d~ll~eLn~~i~~ 65 (76)
T 2k53_A 17 RGTAPIFINNGMHCLGCPSSMGESIEDACAVHGIDADKLVKELNEYFEK 65 (76)
T ss_dssp GGGHHHHHHTTCCCCSSCCCCCSBHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCccccccHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 44455555544 67899999999999999999999988753
No 233
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=53.23 E-value=10 Score=29.87 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=22.5
Q ss_pred hhhHHHHH----HHHHcCC-ceehhhhhhhcCCCH
Q 023862 82 DVRNRAMD----AVDACNR-RVTIGDVAGKAGLKL 111 (276)
Q Consensus 82 ~~~~rim~----Ave~lg~-rvTvgDVAa~aGL~l 111 (276)
..+.+|++ .+.+.|+ .+|+.|||.++|++.
T Consensus 28 ~~r~~Il~aa~~lf~~~G~~~~tv~~IA~~agvs~ 62 (215)
T 2qko_A 28 ERRAALVNAAIEVLAREGARGLTFRAVDVEANVPK 62 (215)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTCCHHHHHHHSSSTT
T ss_pred HHHHHHHHHHHHHHHHhChhhccHHHHHHHcCCCc
Confidence 44556655 5566787 599999999999765
No 234
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=53.14 E-value=42 Score=31.64 Aligned_cols=66 Identities=18% Similarity=0.161 Sum_probs=48.3
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcCcchHH
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRA 147 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP~nfRs 147 (276)
.++.+.+..+-+-=-++|+.++|...|++.+++|+.|..+-.|..=+=.......+|+...++-|.
T Consensus 301 ~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~~~r~ 366 (394)
T 3txn_A 301 TMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVD 366 (394)
T ss_dssp HHHHHHHHHHHTTCSEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCC----
T ss_pred HHHHHHHHHHhHhhceeeHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEEcCCCCEEEECCCcchh
Confidence 344444443444457899999999999999999999999999985555678877788888666444
No 235
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=53.03 E-value=12 Score=28.58 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
.+-.|+..+...++.+|+.|+|...|++...+-+.|..|..+ |-++..
T Consensus 48 ~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~--Gli~r~ 95 (160)
T 3boq_A 48 AKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKD--GMVVKA 95 (160)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHH--TSEEEC
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHC--CCEEee
Confidence 456789999666678999999999999999999999999887 555543
No 236
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=52.63 E-value=8.4 Score=27.48 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.0
Q ss_pred eehhhhhhhcCCCHHHHHHHHH
Q 023862 98 VTIGDVAGKAGLKLNEAQKALQ 119 (276)
Q Consensus 98 vTvgDVAa~aGL~l~~Ae~aL~ 119 (276)
+|+.|||..+|++...+-+.|.
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 5889999999999999977663
No 237
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=52.51 E-value=28 Score=26.51 Aligned_cols=43 Identities=14% Similarity=0.051 Sum_probs=37.4
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~ 125 (276)
..+-.|+..+... +.+|+.|+|...|++...+-+.|..|..+.
T Consensus 41 ~~q~~iL~~l~~~-~~~~~~eLa~~l~~~~~~vs~~l~~L~~~G 83 (149)
T 4hbl_A 41 YSQYLVMLTLWEE-NPQTLNSIGRHLDLSSNTLTPMLKRLEQSG 83 (149)
T ss_dssp HHHHHHHHHHHHS-SSEEHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 3567889999776 679999999999999999999999998763
No 238
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=52.37 E-value=8.8 Score=30.08 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=24.2
Q ss_pred chhhHHHHHH----HHHcCCc-eehhhhhhhcCCCHH
Q 023862 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLN 112 (276)
Q Consensus 81 ~~~~~rim~A----ve~lg~r-vTvgDVAa~aGL~l~ 112 (276)
.+.+.+|++| +.+.|+. +|+.|||.++|++..
T Consensus 9 ~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~Agvskg 45 (197)
T 2f07_A 9 SGKYEKILQAAIEVISEKGLDKASISDIVKKAGTAQG 45 (197)
T ss_dssp CSHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHH
T ss_pred hHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCch
Confidence 4556777666 4567874 999999999998754
No 239
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=52.25 E-value=13 Score=28.20 Aligned_cols=44 Identities=16% Similarity=0.127 Sum_probs=32.4
Q ss_pred hhhHHHHHHHHHcC-CceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023862 82 DVRNRAMDAVDACN-RRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (276)
Q Consensus 82 ~~~~rim~Ave~lg-~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~ 125 (276)
..+-.++..+.+.+ +.+|+.|+|...|++...+-+.|..|..+.
T Consensus 41 ~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~G 85 (148)
T 3jw4_A 41 SQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKG 85 (148)
T ss_dssp HHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCC
Confidence 34578888888875 789999999999999999999999998874
No 240
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=52.08 E-value=8 Score=30.45 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=23.3
Q ss_pred hhHHHHHH----HHHcCCc-eehhhhhhhcCCCHHH
Q 023862 83 VRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (276)
Q Consensus 83 ~~~rim~A----ve~lg~r-vTvgDVAa~aGL~l~~ 113 (276)
.+.+|++| +.+.||. +|+.|||.++|++.-.
T Consensus 10 tr~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~gt 45 (203)
T 2np5_A 10 SPERLAAALFDVAAESGLEGASVREVAKRAGVSIGA 45 (203)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHH
T ss_pred hHHHHHHHHHHHHHHhChhhccHHHHHHHhCCCHHH
Confidence 45566554 5677876 9999999999987643
No 241
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=52.05 E-value=17 Score=22.43 Aligned_cols=38 Identities=5% Similarity=0.033 Sum_probs=27.0
Q ss_pred CCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHH
Q 023862 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQ 119 (276)
Q Consensus 79 l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~ 119 (276)
+.++....|++.++ .| .|+.+||...|++...+.+-|.
T Consensus 6 ~~~~~~~~i~~l~~-~g--~s~~~ia~~lgvs~~Tv~r~l~ 43 (52)
T 1jko_C 6 INKHEQEQISRLLE-KG--HPRQQLAIIFGIGVSTLYRYFP 43 (52)
T ss_dssp SCTTHHHHHHHHHH-TT--CCHHHHHHTTSCCHHHHHHHSC
T ss_pred CCHHHHHHHHHHHH-cC--CCHHHHHHHHCCCHHHHHHHHH
Confidence 44444556666554 33 8999999999999988866543
No 242
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=51.99 E-value=12 Score=30.03 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=24.2
Q ss_pred chhhHHHHHHH----HHcCCc-eehhhhhhhcCCCHH
Q 023862 81 ADVRNRAMDAV----DACNRR-VTIGDVAGKAGLKLN 112 (276)
Q Consensus 81 ~~~~~rim~Av----e~lg~r-vTvgDVAa~aGL~l~ 112 (276)
.+.+.+|++|. .+.|+. +|+.|||.++|++..
T Consensus 42 ~~~r~~Il~aA~~l~~~~G~~~~tv~~IA~~AGvs~~ 78 (229)
T 3bni_A 42 AERLTRILDACADLLDEVGYDALSTRAVALRADVPIG 78 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHHHhcChhhccHHHHHHHHCCCch
Confidence 35566776654 556876 999999999998864
No 243
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=51.53 E-value=12 Score=31.68 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=33.8
Q ss_pred HcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecC
Q 023862 93 ACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE 134 (276)
Q Consensus 93 ~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSes 134 (276)
+.++.+|+.|+|...|++...+-+.|..|..+ |-++...+
T Consensus 16 ~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~--GlV~r~~~ 55 (214)
T 3hrs_A 16 TRHNKITNKEIAQLMQVSPPAVTEMMKKLLAE--ELLIKDKK 55 (214)
T ss_dssp SSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEETT
T ss_pred hcCCCcCHHHHHHHHCCChhHHHHHHHHHHHC--CCEEEecC
Confidence 34678999999999999999999999999987 55655554
No 244
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=51.39 E-value=9.4 Score=29.91 Aligned_cols=31 Identities=10% Similarity=0.236 Sum_probs=23.1
Q ss_pred hhHHHHH----HHHHcCC-ceehhhhhhhcCCCHHH
Q 023862 83 VRNRAMD----AVDACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 83 ~~~rim~----Ave~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
.+.+|++ .+.+.|| .+|+.|||.++|++...
T Consensus 8 ~r~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvs~gt 43 (197)
T 2gen_A 8 RKDEILQAALACFSEHGVDATTIEMIRDRSGASIGS 43 (197)
T ss_dssp CHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCChHH
Confidence 3555554 4567897 69999999999987643
No 245
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=51.39 E-value=10 Score=30.63 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=23.8
Q ss_pred hhhHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023862 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
+.+.+|++| +.+.|+ .+|+.|||.++|++...
T Consensus 13 ~~r~~Il~AA~~l~~~~G~~~~tv~~IA~~agvs~~t 49 (231)
T 2qib_A 13 ERRQQLIGVALDLFSRRSPDEVSIDEIASAAGISRPL 49 (231)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHH
Confidence 345666554 556788 79999999999987643
No 246
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=51.25 E-value=9.4 Score=30.54 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=23.7
Q ss_pred hhhHHHHHH----HHHcCC-ceehhhhhhhcCCCHH
Q 023862 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLN 112 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~ 112 (276)
..+.+|++| +.+.|| .+|+.|||.++|++.-
T Consensus 9 ~~r~~Il~aA~~lf~~~Gy~~ts~~~IA~~AGvskg 44 (215)
T 1ui5_A 9 QTRATIIGAAADLFDRRGYESTTLSEIVAHAGVTKG 44 (215)
T ss_dssp THHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCch
Confidence 456666555 556787 7999999999998864
No 247
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=51.20 E-value=12 Score=28.63 Aligned_cols=61 Identities=18% Similarity=0.251 Sum_probs=42.7
Q ss_pred chhhHHHHHHHHHc----CCce-ehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcCcc
Q 023862 81 ADVRNRAMDAVDAC----NRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNN 144 (276)
Q Consensus 81 ~~~~~rim~Ave~l----g~rv-TvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP~n 144 (276)
..+-..|.+.+... |.++ |..++|.+-|+|...++++|..|.++ |-|+... |-=.|+=+.+
T Consensus 12 ~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~--Gli~~~~-~~G~~V~~~~ 77 (113)
T 3tqn_A 12 QQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDD--NVIEKRR-GLGMLVKAGA 77 (113)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEET-TTEEEECTTH
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEec-CCeEEEeCCc
Confidence 34455666666654 4445 89999999999999999999999987 4565443 3335555443
No 248
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=51.16 E-value=30 Score=28.32 Aligned_cols=34 Identities=12% Similarity=0.185 Sum_probs=29.0
Q ss_pred CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023862 96 RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (276)
Q Consensus 96 ~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeV 131 (276)
..+|..|+|...|++...+-+.|..|..+ |-+++
T Consensus 192 ~~lt~~~lA~~lG~sr~tvsR~l~~L~~~--GlI~~ 225 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVTRLLGDLREK--KMISI 225 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred ccCCHHHHHHHHCCcHHHHHHHHHHHHHC--CCEEE
Confidence 46799999999999999999999999876 44444
No 249
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=51.03 E-value=21 Score=31.28 Aligned_cols=49 Identities=10% Similarity=0.075 Sum_probs=40.1
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeec
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSe 133 (276)
..+-+|+.++.+.+ +.|+.|+|.+.|++...+.+.|..|... |-++-..
T Consensus 152 ~~~~~IL~~L~~~~-~~s~~eLA~~lglsksTv~r~L~~Le~~--GlV~r~~ 200 (244)
T 2wte_A 152 REEMKLLNVLYETK-GTGITELAKMLDKSEKTLINKIAELKKF--GILTQKG 200 (244)
T ss_dssp HHHHHHHHHHHHHT-CBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEET
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEeC
Confidence 34667888887654 6999999999999999999999999876 5665543
No 250
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=51.03 E-value=7.8 Score=33.33 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=20.0
Q ss_pred eehhhhhhhcCCCHHHHHHHHH
Q 023862 98 VTIGDVAGKAGLKLNEAQKALQ 119 (276)
Q Consensus 98 vTvgDVAa~aGL~l~~Ae~aL~ 119 (276)
+|+.|||.++|+|...+-++|+
T Consensus 1 ~ti~diA~~agVS~~TVSrvLn 22 (340)
T 1qpz_A 1 ATIKDVAKRANVSTTTVSHVIN 22 (340)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 5899999999999999988886
No 251
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=51.01 E-value=42 Score=28.53 Aligned_cols=42 Identities=21% Similarity=0.314 Sum_probs=35.1
Q ss_pred HcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeec-Ccc
Q 023862 93 ACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD-EGD 136 (276)
Q Consensus 93 ~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSe-sGD 136 (276)
+-|.+++..|+|.+-|+|...++++|..|.++ |-+++.. .|-
T Consensus 45 ~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~--Glv~~~~~~G~ 87 (237)
T 3c7j_A 45 PSGTALRQQELATLFGVSRMPVREALRQLEAQ--SLLRVETHKGA 87 (237)
T ss_dssp CTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEEETTTEE
T ss_pred CCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEEeCCCce
Confidence 46789999999999999999999999999866 6677664 443
No 252
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=50.97 E-value=10 Score=29.79 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=22.9
Q ss_pred hhhHHHHHHHH-----HcCC-ceehhhhhhhcCCCH
Q 023862 82 DVRNRAMDAVD-----ACNR-RVTIGDVAGKAGLKL 111 (276)
Q Consensus 82 ~~~~rim~Ave-----~lg~-rvTvgDVAa~aGL~l 111 (276)
..+.+|++|.. +.|+ .+|+.|||.++|++.
T Consensus 11 ~~r~~Il~aa~~l~~~~~G~~~~ti~~Ia~~Agvs~ 46 (220)
T 3lsj_A 11 QTRHALMSAARHLMESGRGFGSLSLREVTRAAGIVP 46 (220)
T ss_dssp HHHHHHHHHHHHHTTTSCCGGGCCHHHHHHHHTSCG
T ss_pred hHHHHHHHHHHHHHHhCCCcccCCHHHHHHHhCCCh
Confidence 45667777664 5554 799999999999774
No 253
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=50.94 E-value=9 Score=30.04 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=23.3
Q ss_pred hhhHHHHHH----HHHcCC-ceehhhhhhhcCCCHH
Q 023862 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLN 112 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~ 112 (276)
+.+.+|++| +.+.|| .+|+.|||.++|++..
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskg 46 (210)
T 2xdn_A 11 ETRAQIIEAAERAFYKRGVARTTLADIAELAGVTRG 46 (210)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHHHHHcCcccCcHHHHHHHHCCChH
Confidence 456677655 456787 5999999999998753
No 254
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=50.70 E-value=14 Score=32.42 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=47.8
Q ss_pred cccccCCCCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcC
Q 023862 72 RIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (276)
Q Consensus 72 ~~v~~~~l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP 142 (276)
|.+.+.-|-..++-.|.+++. ++..|+.|+|.++|++..-.++=|+.|++ -|.|+..++|+..|.-.
T Consensus 26 ~~~~~~~l~~~~~l~i~~~l~--~~~~t~~eLA~~~g~~~~~l~r~Lr~L~~--~Gll~~~~~~~~~y~~t 92 (374)
T 1qzz_A 26 NLVTPMALRVAATLRLVDHLL--AGADTLAGLADRTDTHPQALSRLVRHLTV--VGVLEGGEKQGRPLRPT 92 (374)
T ss_dssp CCHHHHHHHHHHHTTHHHHHH--TTCCSHHHHHHHHTCCHHHHHHHHHHHHH--TTSEECCCC-CCCCEEC
T ss_pred hhHHHHHHHHHHHcChHHHHh--CCCCCHHHHHHHhCcCHHHHHHHHHHHhh--CCCEEEeCCCCeEEEEC
Confidence 334444455666777888884 35699999999999999999999999986 45666555554455554
No 255
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=50.59 E-value=4 Score=32.79 Aligned_cols=43 Identities=9% Similarity=0.187 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~ 125 (276)
..+.+|++ .-+.|.+.|..|+|.+.|+|...++++|..|.++.
T Consensus 13 ~l~~~Il~-~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~G 55 (163)
T 2gqq_A 13 RIDRNILN-ELQKDGRISNVELSKRVGLSPTPCLERVRRLERQG 55 (163)
T ss_dssp SHHHHHHH-HHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHT
T ss_pred HHHHHHHH-HHHhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 45678888 45568889999999999999999999999998764
No 256
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=50.11 E-value=10 Score=30.48 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=24.2
Q ss_pred hhhHHHHHH----HHHcCCc-eehhhhhhhcCCCHHH
Q 023862 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~r-vTvgDVAa~aGL~l~~ 113 (276)
..+.+|++| +.+.|+. +|+.|||.++|++...
T Consensus 40 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t 76 (225)
T 2id3_A 40 RIREAVLLAAGDALAADGFDALDLGEIARRAGVGKTT 76 (225)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHH
Confidence 455666654 5566876 9999999999988754
No 257
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=50.07 E-value=9.7 Score=31.11 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=23.2
Q ss_pred chhhHHHHHHH----HHcCC-ceehhhhhhhcCCCH
Q 023862 81 ADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKL 111 (276)
Q Consensus 81 ~~~~~rim~Av----e~lg~-rvTvgDVAa~aGL~l 111 (276)
...+.+|++|. .+.|+ .+|+.|||.++|++.
T Consensus 45 ~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~aGvs~ 80 (245)
T 3aqt_A 45 EQTRARLITSARTLMAERGVDNVGIAEITEGANIGT 80 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhCCCh
Confidence 34566666655 45587 799999999999764
No 258
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=49.95 E-value=6.1 Score=30.34 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=24.2
Q ss_pred hhhHHHHHH----HHHcCCc-eehhhhhhhcCCCHHH
Q 023862 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~r-vTvgDVAa~aGL~l~~ 113 (276)
+.+.+|+++ +.+.|+. +|+.|||.++|++...
T Consensus 20 ~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t 56 (203)
T 3mnl_A 20 ERRKRILDATMAIASKGGYEAVQMRAVADRADVAVGT 56 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCHHHHHHHcCCChhH
Confidence 456666665 5556875 9999999999988654
No 259
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=49.77 E-value=25 Score=32.34 Aligned_cols=64 Identities=20% Similarity=0.238 Sum_probs=47.2
Q ss_pred CchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCc-cEEEEcCcchH
Q 023862 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG-DVLYVFPNNYR 146 (276)
Q Consensus 80 ~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesG-DIlYvFP~nfR 146 (276)
+.....++++.+.+ +..+|+.+++...|++-..|++.|..|... |.|+-...| .-+|.+++-++
T Consensus 295 ~~~~~~~ll~~l~~-~p~~t~~~~~~~~gvS~~Ta~r~L~~L~e~--GiL~~~~~gR~~~y~~~~~~~ 359 (373)
T 2qc0_A 295 PKIYSHELVQVIFE-QPYCRIQNLVESGLAKRQTASVYLKQLCDI--GVLEEVQSGKEKLFVHPKFVT 359 (373)
T ss_dssp TTTCCHHHHHHHHH-CSEEEHHHHHHTSSSCHHHHHHHHHHHHHT--TSCEEC--CCSCEEECHHHHH
T ss_pred cchhHHHHHHHHHh-CCcccHHHHHHHhCCCHHHHHHHHHHHHHC--CcEEEecCCCceEEehHHHHH
Confidence 33444677777775 457999999999999999999999999975 667665544 36777765444
No 260
>1mgt_A MGMT, protein (O6-methylguanine-DNA methyltransferase); DNA repair protein, suicidal enzyme, hyperthermostability; 1.80A {Thermococcus kodakarensis} SCOP: a.4.2.1 c.55.7.1
Probab=49.67 E-value=22 Score=30.46 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=41.9
Q ss_pred chhhHHHHHHHH-Hc--CCceehhhhhhhcCCCHHHHHHHHHH--HHhhcCCceEeecCc
Q 023862 81 ADVRNRAMDAVD-AC--NRRVTIGDVAGKAGLKLNEAQKALQA--LAADTDGFLEVSDEG 135 (276)
Q Consensus 81 ~~~~~rim~Ave-~l--g~rvTvgDVAa~aGL~l~~Ae~aL~a--LAsD~~GhLeVSesG 135 (276)
.+.+.++.+++. +. |.-+|-||||...|.+...+-.+|.+ ++-...||==|..+|
T Consensus 90 t~Fq~~V~~~l~~~IP~G~~~TYg~iA~~~G~p~RaVG~A~~~Np~~~~iPcHRVv~~~G 149 (174)
T 1mgt_A 90 TPFEKKVYEWLTKNVKRGSVITYGDLAKALNTSPRAVGGAMKRNPYPIVVPCHRVVAHDG 149 (174)
T ss_dssp CHHHHHHHHHHHHHSCTTCCEEHHHHHHHTTSCHHHHHHHHHTCSCTTTSCGGGEEBTTB
T ss_pred ChHHHHHHHHHHccCCCCceEeHHHHHHHhCCCHHHHHHHHHhCCCCCcCCcCeEECCCC
Confidence 578899999999 66 77789999999999994333333332 123469999999999
No 261
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=49.65 E-value=52 Score=31.81 Aligned_cols=61 Identities=16% Similarity=0.143 Sum_probs=36.1
Q ss_pred HHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee------cCccEEEEcCcchHH
Q 023862 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS------DEGDVLYVFPNNYRA 147 (276)
Q Consensus 86 rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS------esGDIlYvFP~nfRs 147 (276)
||++.+.+.|. +|-.++|..++++.+++++.|-.|..+.--++|-- +.+--.|.|=-|...
T Consensus 364 RI~r~L~~~~~-l~d~~ia~~a~i~~k~vR~~Ly~L~~~g~v~~qevp~~~d~~~~~~~ylW~~~~~~ 430 (534)
T 2xub_A 364 RIFRLVLQKKH-IEQKQVEDFAMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILS 430 (534)
T ss_dssp HHHHHHHHC----CHHHHHHHHCSCHHHHHHHHHHHHHTTCC---------------------CCHHH
T ss_pred HHHHHHHHcCC-CCHHHHHHHhCCCHHHHHHHHHHHHHCCCeEEEEccCCCCCCCcceEEEEEEcHHH
Confidence 45566666665 99999999999999999999999999988777643 245677887555544
No 262
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=49.64 E-value=27 Score=28.65 Aligned_cols=48 Identities=19% Similarity=0.207 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCc
Q 023862 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG 135 (276)
Q Consensus 85 ~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesG 135 (276)
--+.-++++ .+.||-++++.||++-..+|..|.+|. |.|=.++--.+|
T Consensus 23 Lyla~lId~--~~~nvp~L~~~TGmPRRTiQd~I~aL~-elgI~~~FvQ~G 70 (117)
T 3ke2_A 23 LYLAHLMDD--ARHNLLSLGKLTGMPRRTLQDAIASFA-DIGIEVEFVQDG 70 (117)
T ss_dssp HHHHHHHHH--SCCCHHHHHHHHCCCHHHHHHHHHTGG-GGTCEEEEECCT
T ss_pred HHHHHHHhc--CCCCHHHHHHHHCCCHhHHHHHHHHhh-hCCeEEEEEecc
Confidence 345667777 777999999999999999999999999 777777755445
No 263
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=49.51 E-value=6.6 Score=30.07 Aligned_cols=32 Identities=16% Similarity=0.314 Sum_probs=23.4
Q ss_pred hhhHHHHHHH----HHcCCc-eehhhhhhhcCCCHHH
Q 023862 82 DVRNRAMDAV----DACNRR-VTIGDVAGKAGLKLNE 113 (276)
Q Consensus 82 ~~~~rim~Av----e~lg~r-vTvgDVAa~aGL~l~~ 113 (276)
+.|.+|++|+ .+.|+. +|+.|||.++|++...
T Consensus 3 ~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t 39 (189)
T 3geu_A 3 AMKDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKAS 39 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCHHH
T ss_pred hHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHH
Confidence 4456665554 456766 9999999999988653
No 264
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=49.50 E-value=10 Score=30.48 Aligned_cols=31 Identities=10% Similarity=0.129 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHcCCc-eehhhhhhhcCCCHHH
Q 023862 83 VRNRAMDAVDACNRR-VTIGDVAGKAGLKLNE 113 (276)
Q Consensus 83 ~~~rim~Ave~lg~r-vTvgDVAa~aGL~l~~ 113 (276)
.-...++.+.+.|+. +|+.|||.++|++...
T Consensus 35 Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t 66 (230)
T 2iai_A 35 LLSVAVQVFIERGYDGTSMEHLSKAAGISKSS 66 (230)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHcCccccCHHHHHHHHCCChhH
Confidence 445556667778985 9999999999988643
No 265
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=49.25 E-value=6.9 Score=29.86 Aligned_cols=33 Identities=12% Similarity=0.126 Sum_probs=24.6
Q ss_pred hhhHHHHHH----HHHcCCc-eehhhhhhhcCCCHHHH
Q 023862 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~r-vTvgDVAa~aGL~l~~A 114 (276)
..+.+|++| +.+.|+. +|+.|||.++|++....
T Consensus 14 ~~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~ 51 (156)
T 3ljl_A 14 ITIQKIMDAVVDQLLRLGYDKMSYTTLSQQTGVSRTGI 51 (156)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHCCHHHHHHHHTCCHHHH
T ss_pred hHHHHHHHHHHHHHHHhChhhcCHHHHHHHHCCCHHHH
Confidence 345666555 5566875 89999999999987654
No 266
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=49.22 E-value=11 Score=29.48 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=23.3
Q ss_pred hhhHHHHHH----HHHcCCc-eehhhhhhhcCCCHH
Q 023862 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLN 112 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~r-vTvgDVAa~aGL~l~ 112 (276)
+.|.+|++| +.+.||. +|+.|||.++|++.-
T Consensus 10 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~g 45 (194)
T 2nx4_A 10 ERRRSITAAAWRLIAARGIEAANMRDIATEAGYTNG 45 (194)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcc
Confidence 345667655 5567875 999999999998764
No 267
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=49.20 E-value=8.9 Score=31.41 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=23.2
Q ss_pred hhHHHHHHH----HHcCCc-eehhhhhhhcCCCHHH
Q 023862 83 VRNRAMDAV----DACNRR-VTIGDVAGKAGLKLNE 113 (276)
Q Consensus 83 ~~~rim~Av----e~lg~r-vTvgDVAa~aGL~l~~ 113 (276)
.+.+|+++. .+.|+. +|+.|||.++|++...
T Consensus 26 tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~t 61 (211)
T 3fiw_A 26 NRETVITEALDLLDEVGLDGVSTRRLAKRLGVEQPS 61 (211)
T ss_dssp CHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHH
T ss_pred CHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhH
Confidence 455665554 556987 9999999999987654
No 268
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=49.19 E-value=17 Score=31.66 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=44.6
Q ss_pred CCcccccCCCCchhhHHHHHHHHHcCCce-ehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeec
Q 023862 70 PGRIVESDKLPADVRNRAMDAVDACNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (276)
Q Consensus 70 ~~~~v~~~~l~~~~~~rim~Ave~lg~rv-TvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSe 133 (276)
||=.+.-+.-......+|++.+++.|... ++.|++...|++-.++++.|..|+ +.|--.+|.+
T Consensus 129 ~~h~~~~~~~~~~~~~~i~~~~~~~g~~pp~~~dl~~~l~~~~~~~~~~l~~l~-~~g~lv~l~~ 192 (258)
T 1lva_A 129 AGFTPSFSETQKKLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLV-REGVLVKIND 192 (258)
T ss_dssp TTCCCCCCHHHHHHHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHH-HTTSEEESSS
T ss_pred CCCccCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHhHhCCCHHHHHHHHHHHH-HCCCEEEecC
Confidence 33334444444556778888898888877 899999999999999966555554 4555566654
No 269
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=49.19 E-value=11 Score=29.61 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=24.8
Q ss_pred chhhHHHHHHH----HHcCCc-eehhhhhhhcCCCHHH
Q 023862 81 ADVRNRAMDAV----DACNRR-VTIGDVAGKAGLKLNE 113 (276)
Q Consensus 81 ~~~~~rim~Av----e~lg~r-vTvgDVAa~aGL~l~~ 113 (276)
...+.+|+++. .+.||. +|+.|||.++|++.-.
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgt 47 (210)
T 2wui_A 10 QKTRDGILDAAERVFLEKGVGTTAMADLADAAGVSRGA 47 (210)
T ss_dssp THHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHH
Confidence 34567776654 567875 9999999999988644
No 270
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=48.94 E-value=22 Score=27.07 Aligned_cols=46 Identities=11% Similarity=0.167 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeV 131 (276)
.+-.|+..+...+ .+|+.|+|...|++...+-+.|..|..+ |-++.
T Consensus 44 ~~~~iL~~l~~~~-~~t~~ela~~l~i~~~tvs~~l~~Le~~--Glv~r 89 (155)
T 3cdh_A 44 PEWRVLACLVDND-AMMITRLAKLSLMEQSRMTRIVDQMDAR--GLVTR 89 (155)
T ss_dssp HHHHHHHHHSSCS-CBCHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHCC-CcCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEe
Confidence 4567888887654 6999999999999999999999999987 45554
No 271
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=48.85 E-value=19 Score=26.26 Aligned_cols=42 Identities=19% Similarity=0.284 Sum_probs=33.7
Q ss_pred HHHHHHHHHcC-------C--ceehhhhhhhcCCCHHHHHHHHHHHHhhcC
Q 023862 85 NRAMDAVDACN-------R--RVTIGDVAGKAGLKLNEAQKALQALAADTD 126 (276)
Q Consensus 85 ~rim~Ave~lg-------~--rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~ 126 (276)
|++.+.+.+.| . ..|+.++|...|+++++..++|++.+.+..
T Consensus 19 P~~~~vf~~~G~~c~~C~~a~~~tL~~Aa~~~gid~~~ll~~Ln~~~~~~~ 69 (73)
T 2k5e_A 19 PGVAGVLRSYNLGCIGCMGAQNESLEQGANAHGLNVEDILRDLNALALEHH 69 (73)
T ss_dssp THHHHHHHHTTGGGGGTTTGGGSBHHHHHHHTTCCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHcCCCCCCCCccccccHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 45556666544 3 589999999999999999999999887764
No 272
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=48.58 E-value=11 Score=30.01 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=24.7
Q ss_pred hhhHHHHHH----HHHcCCc-eehhhhhhhcCCCHHHH
Q 023862 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~r-vTvgDVAa~aGL~l~~A 114 (276)
+.+.+|++| +.+.||. +|+.|||.++|++....
T Consensus 22 ~~r~~Il~AA~~lf~e~G~~~~s~~~IA~~AGVsk~tl 59 (207)
T 3bjb_A 22 ARHVRMLEAAIELATEKELARVQMHEVAKRAGVAIGTL 59 (207)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHH
Confidence 446666555 5567885 89999999999887553
No 273
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=48.57 E-value=28 Score=25.26 Aligned_cols=39 Identities=8% Similarity=0.088 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHcC--CceehhhhhhhcCCCHHHHHHHHHHH
Q 023862 83 VRNRAMDAVDACN--RRVTIGDVAGKAGLKLNEAQKALQAL 121 (276)
Q Consensus 83 ~~~rim~Ave~lg--~rvTvgDVAa~aGL~l~~Ae~aL~aL 121 (276)
.-.+|++.+++.- ...|+.|+|...|++....++.+...
T Consensus 3 ~~~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3467788887763 37999999999999998887777664
No 274
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=48.53 E-value=22 Score=26.34 Aligned_cols=56 Identities=7% Similarity=0.099 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcC----CCHHHHHHHHHHHHhhcCCceEeec-CccEEEEc
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAG----LKLNEAQKALQALAADTDGFLEVSD-EGDVLYVF 141 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aG----L~l~~Ae~aL~aLAsD~~GhLeVSe-sGDIlYvF 141 (276)
.+..||..+.+ ++.+|+.|+|...| ++...+-+.|..|..+. -++... +...+|+.
T Consensus 11 ~~~~vL~~l~~-~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~G--lv~r~~~~rr~~~~~ 71 (123)
T 1okr_A 11 AEWEVMNIIWM-KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKG--FIDRKKDNKIFQYYS 71 (123)
T ss_dssp HHHHHHHHHHH-HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHT--SEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHh-CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCC--CeEEEecCCeEEEEE
Confidence 56778999987 45799999999999 88999999999998874 444433 34445544
No 275
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=48.46 E-value=11 Score=29.52 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=22.5
Q ss_pred hhhHHHHHH----HHHcCC-ceehhhhhhhcCCCH
Q 023862 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKL 111 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l 111 (276)
..+.+|+++ +.+.|| .+|+.|||.++|++.
T Consensus 12 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~ 46 (197)
T 2hyt_A 12 ETRATLLATARKVFSERGYADTSMDDLTAQASLTR 46 (197)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCH
Confidence 345566555 556787 699999999999874
No 276
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=48.22 E-value=13 Score=29.04 Aligned_cols=32 Identities=25% Similarity=0.484 Sum_probs=23.9
Q ss_pred hhhHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023862 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
+.+.+|++| +.+.|+ .+|+.|||.++|++...
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t 47 (212)
T 2ras_A 11 AMRARLVDVAQAIVEERGGAGLTLSELAARAGISQAN 47 (212)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCcHHHHHHHhCCCHHH
Confidence 355666655 456786 69999999999988654
No 277
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=48.18 E-value=11 Score=33.66 Aligned_cols=45 Identities=20% Similarity=0.232 Sum_probs=36.6
Q ss_pred CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcCc
Q 023862 96 RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (276)
Q Consensus 96 ~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP~ 143 (276)
+..|+.|+|.++|++....++=|+.|++ .|.|+-.++|. .|.-.+
T Consensus 70 g~~t~~eLA~~~g~~~~~l~rlLr~L~~--~g~l~~~~~~~-~y~~t~ 114 (369)
T 3gwz_A 70 GPRTATALAEATGAHEQTLRRLLRLLAT--VGVFDDLGHDD-LFAQNA 114 (369)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSSEECSSTT-EEECCH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHh--CCCEEEeCCCc-eEecCH
Confidence 4799999999999999999999999998 57777766664 365543
No 278
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=48.11 E-value=9.1 Score=30.71 Aligned_cols=31 Identities=26% Similarity=0.193 Sum_probs=23.1
Q ss_pred chhhHHHHHHH----HHcCC-ceehhhhhhhcCCCH
Q 023862 81 ADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKL 111 (276)
Q Consensus 81 ~~~~~rim~Av----e~lg~-rvTvgDVAa~aGL~l 111 (276)
.+.|.+|++|. .+.|| .+|+.|||.++|++.
T Consensus 34 ~~~r~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~ 69 (237)
T 3kkd_A 34 EQRRQAILDAAMRLIVRDGVRAVRHRAVAAEAQVPL 69 (237)
T ss_dssp -CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHHHhcChhhcCHHHHHHHhCCCh
Confidence 34566776654 56787 799999999999763
No 279
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=48.00 E-value=8.1 Score=35.75 Aligned_cols=38 Identities=16% Similarity=0.244 Sum_probs=26.9
Q ss_pred HHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHH
Q 023862 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALA 122 (276)
Q Consensus 85 ~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLA 122 (276)
..|++.+.+..+.+|+.|++..||+..+++-.+|+.|-
T Consensus 196 ~~il~~L~~~~~~isi~~is~~T~i~~~Dii~tL~~l~ 233 (278)
T 2pq8_A 196 WVLLENLRDFRGTLSIKDLSQMTSITQNDIISTLQSLN 233 (278)
T ss_dssp HHHHHHTC-------CHHHHHHHCBCHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCccHHHHHHHhCCCHHHHHHHHHHCC
Confidence 56677777777799999999999999999999998873
No 280
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=47.91 E-value=34 Score=30.38 Aligned_cols=62 Identities=19% Similarity=0.254 Sum_probs=44.4
Q ss_pred CCchhhHHHHHHH-HHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc---CCceEeecCccEEEEc
Q 023862 79 LPADVRNRAMDAV-DACNRRVTIGDVAGKAGLKLNEAQKALQALAADT---DGFLEVSDEGDVLYVF 141 (276)
Q Consensus 79 l~~~~~~rim~Av-e~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~---~GhLeVSesGDIlYvF 141 (276)
++++--.++++|+ =-.|.-+|+.++|...|++.++++++|..|+++| +--+++-+.|+- |.|
T Consensus 11 ~~~~~l~~~iEAlLf~a~epvs~~~La~~l~~~~~~v~~~l~~L~~~y~~~~rGiel~~v~~g-y~l 76 (219)
T 2z99_A 11 LDADELKRVLEALLLVIDTPVTADALAAATEQPVYRVAAKLQLMADELTGRDSGIDLRHTSEG-WRM 76 (219)
T ss_dssp CCHHHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCSEEEEEETTE-EEE
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHhhCCCCEEEEEECCE-EEE
Confidence 3444334444444 3467789999999999999999999999999988 334666664443 555
No 281
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=47.88 E-value=18 Score=28.13 Aligned_cols=57 Identities=9% Similarity=0.123 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHc-CCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeec---CccEEEEc
Q 023862 83 VRNRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD---EGDVLYVF 141 (276)
Q Consensus 83 ~~~rim~Ave~l-g~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSe---sGDIlYvF 141 (276)
.+-.||..+... +..+|+.|+|...|++...+-+.|..|..+ |.++-.. ++-.+|+.
T Consensus 47 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~--Glv~r~~~~~DrR~~~l~ 107 (168)
T 3u2r_A 47 QQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDR--GLVLRTRKPENRRVVEVA 107 (168)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHT--TSEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHC--CCEeecCCCCCCCeeEeE
Confidence 567889999988 489999999999999999999999999886 5555432 34444443
No 282
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=47.77 E-value=83 Score=26.58 Aligned_cols=66 Identities=18% Similarity=0.191 Sum_probs=45.2
Q ss_pred CCCCchhhHHHHHHHHH----cCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeec-CccEEEEcCcchH
Q 023862 77 DKLPADVRNRAMDAVDA----CNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD-EGDVLYVFPNNYR 146 (276)
Q Consensus 77 ~~l~~~~~~rim~Ave~----lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSe-sGDIlYvFP~nfR 146 (276)
.++...+-..|.+.+.. -|.+++..++|.+-|+|..-+++||..|.++ |-+++.. .| .||-+-+..
T Consensus 27 ~~~~~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~e--Glv~~~~~~G--~~V~~~~~~ 97 (239)
T 2hs5_A 27 TSRTTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIED--RLVAHELNRG--VFVRVPTAE 97 (239)
T ss_dssp CHHHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEETTTE--EEECCCCHH
T ss_pred CcHHHHHHHHHHHHHHcCCCCCcCEeCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEEeCCCe--eEEeCCCHH
Confidence 33444444455555544 4778999999999999999999999999976 5566554 34 444443433
No 283
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P structure initiative; 2.40A {Enterococcus faecalis} SCOP: a.4.1.9 a.121.1.1
Probab=47.59 E-value=9.4 Score=31.21 Aligned_cols=32 Identities=13% Similarity=0.284 Sum_probs=23.5
Q ss_pred hhHHHHHHH----HHc-CC-ceehhhhhhhcCCCHHHH
Q 023862 83 VRNRAMDAV----DAC-NR-RVTIGDVAGKAGLKLNEA 114 (276)
Q Consensus 83 ~~~rim~Av----e~l-g~-rvTvgDVAa~aGL~l~~A 114 (276)
.+.+|+++. .+. |+ .+|+.|||.++|++....
T Consensus 6 tr~~Il~aA~~l~~~~~G~~~~s~~~IA~~aGvs~~tl 43 (220)
T 1z0x_A 6 SKDTIIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAI 43 (220)
T ss_dssp SHHHHHHHHHHHHHHSCCGGGCCHHHHHHHHTSCHHHH
T ss_pred hHHHHHHHHHHHHHhcCCcccCCHHHHHHHcCCCHHHH
Confidence 456666554 455 87 699999999999886543
No 284
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=47.48 E-value=6.9 Score=29.90 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=24.5
Q ss_pred hhhHHHHHH----HHHcCCc-eehhhhhhhcCCCHHHH
Q 023862 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~r-vTvgDVAa~aGL~l~~A 114 (276)
..+.+|+++ +.+.|+. +|+.|||.++|++....
T Consensus 7 ~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~tl 44 (186)
T 2jj7_A 7 QTMENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMA 44 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChhhh
Confidence 445566554 5556875 99999999999987654
No 285
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=47.40 E-value=33 Score=26.34 Aligned_cols=47 Identities=9% Similarity=0.085 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
.+-.++..+... +.+|+.|+|...|++...+-+.|..|..+ |-++-.
T Consensus 51 ~q~~vL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~Le~~--Glv~r~ 97 (159)
T 3s2w_A 51 GQFPFLMRLYRE-DGINQESLSDYLKIDKGTTARAIQKLVDE--GYVFRQ 97 (159)
T ss_dssp TTHHHHHHHHHS-CSEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEEe
Confidence 456788888776 56999999999999999999999999876 555543
No 286
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=47.35 E-value=12 Score=29.59 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=23.8
Q ss_pred hhhHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023862 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
+.+.+|++| +.+.|| .+|+.|||.++|++...
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgt 47 (219)
T 2w53_A 11 ATREGILDAAEACFHEHGVARTTLEMIGARAGYTRGA 47 (219)
T ss_dssp CCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchH
Confidence 346666655 456787 59999999999987643
No 287
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=47.02 E-value=20 Score=27.75 Aligned_cols=48 Identities=25% Similarity=0.294 Sum_probs=40.0
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
..+-.|+..+...+ .+|++|+|...|++...+-+.|..|..+ |-++-.
T Consensus 46 ~~q~~iL~~l~~~~-~~t~~eLa~~l~~~~~tvs~~l~~Le~~--Glv~r~ 93 (162)
T 3k0l_A 46 LPQFTALSVLAAKP-NLSNAKLAERSFIKPQSANKILQDLLAN--GWIEKA 93 (162)
T ss_dssp HHHHHHHHHHHHCT-TCCHHHHHHHHTSCGGGHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHHCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--cCeEec
Confidence 34678899998876 6999999999999999999999999876 555433
No 288
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genom protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=47.02 E-value=11 Score=30.46 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=23.6
Q ss_pred hhhHHHHHHH----HHcCC-ceehhhhhhhcCCCHH
Q 023862 82 DVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLN 112 (276)
Q Consensus 82 ~~~~rim~Av----e~lg~-rvTvgDVAa~aGL~l~ 112 (276)
+.|.+|++|. .+.|| .+|+.|||.++|++..
T Consensus 7 ~~r~~Il~AA~~lF~e~G~~~ts~~~IA~~AGvs~~ 42 (235)
T 2fbq_A 7 ETVERILDAAEQLFAEKGFAETSLRLITSKAGVNLA 42 (235)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHH
T ss_pred hHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCCHH
Confidence 4566776654 56787 6999999999998753
No 289
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=46.97 E-value=4.1 Score=36.22 Aligned_cols=46 Identities=15% Similarity=0.430 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHcC--Cceehhhhhhhc-CCCHHHHHHHHHHHHhhcCCce
Q 023862 82 DVRNRAMDAVDACN--RRVTIGDVAGKA-GLKLNEAQKALQALAADTDGFL 129 (276)
Q Consensus 82 ~~~~rim~Ave~lg--~rvTvgDVAa~a-GL~l~~Ae~aL~aLAsD~~GhL 129 (276)
..+.+|++.++... ..+.+-||+++. +++.++++++|..|.++ ||+
T Consensus 207 ~~~~~Vl~~i~~~~~~~Gi~~~~I~~~l~~~~~~~v~~al~~L~~e--G~I 255 (270)
T 2pi2_A 207 VAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNE--GHI 255 (270)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHhcCCCHHHHHHHHHHHHhC--CEE
Confidence 45788999999875 789999999998 79999999999999887 444
No 290
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=46.94 E-value=11 Score=29.51 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=25.1
Q ss_pred chhhHHHHHH----HHHcCC-ceehhhhhhhcCCCHHHH
Q 023862 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (276)
Q Consensus 81 ~~~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~~A 114 (276)
.+.+.+|++| +.+.|+ .+|+.|||.++|++....
T Consensus 14 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~ 52 (221)
T 3c2b_A 14 SPRQNAVLDQALRLLVEGGEKALTTSGLARAANCSKESL 52 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHHH
Confidence 3456667655 556787 499999999999987543
No 291
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=46.85 E-value=22 Score=27.73 Aligned_cols=47 Identities=15% Similarity=0.095 Sum_probs=33.5
Q ss_pred CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeec--CccE--EEEcC
Q 023862 96 RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD--EGDV--LYVFP 142 (276)
Q Consensus 96 ~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSe--sGDI--lYvFP 142 (276)
...|+.++|.+.|++..++.+.|..|..+.-=..+... +|.+ .|.|-
T Consensus 50 ~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~~~~g~~~~~Ydl~ 100 (128)
T 2vn2_A 50 LFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEHTDEQGIRNEKYTLE 100 (128)
T ss_dssp SSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC----------CEECH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEECCCCcEEEEEehH
Confidence 44899999999999999999999999987644444332 3433 57763
No 292
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=46.50 E-value=34 Score=26.79 Aligned_cols=43 Identities=9% Similarity=0.084 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~ 125 (276)
.+-.++..+.+.+...|+.|+|...|++...+-+.+..|..+.
T Consensus 32 ~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~G 74 (151)
T 4aik_A 32 THWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKG 74 (151)
T ss_dssp HHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCC
Confidence 4567899999999999999999999999999999999998864
No 293
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=45.91 E-value=25 Score=26.07 Aligned_cols=37 Identities=14% Similarity=0.253 Sum_probs=29.1
Q ss_pred hHHHHHHHHHc-CCceehhhhhhhcCCCHHHHHHHHHH
Q 023862 84 RNRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQA 120 (276)
Q Consensus 84 ~~rim~Ave~l-g~rvTvgDVAa~aGL~l~~Ae~aL~a 120 (276)
=.++++.+++. ....|+.|+|...|++...-++.+..
T Consensus 9 i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (113)
T 3oio_A 9 LTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQ 46 (113)
T ss_dssp HHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 35677777776 56799999999999998877666654
No 294
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=45.90 E-value=20 Score=25.97 Aligned_cols=44 Identities=16% Similarity=0.109 Sum_probs=34.5
Q ss_pred CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEc
Q 023862 96 RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (276)
Q Consensus 96 ~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvF 141 (276)
+.+|+.|+|...|++...+-+.|..|..+ |.++..+++...++.
T Consensus 29 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~--Glv~~~~d~R~~~v~ 72 (95)
T 2qvo_A 29 NDVYIQYIASKVNSPHSYVWLIIKKFEEA--KMVECELEGRTKIIR 72 (95)
T ss_dssp CCEEHHHHHHHSSSCHHHHHHHHHHHHHT--TSEEEEEETTEEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC--cCccCCCCCCeEEEE
Confidence 45999999999999999999999999764 556555666544443
No 295
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=45.87 E-value=11 Score=29.56 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=24.1
Q ss_pred hhhHHHHHHH----HHcCCc-eehhhhhhhcCCCHHH
Q 023862 82 DVRNRAMDAV----DACNRR-VTIGDVAGKAGLKLNE 113 (276)
Q Consensus 82 ~~~~rim~Av----e~lg~r-vTvgDVAa~aGL~l~~ 113 (276)
+.+.+|+++. .+.||. +|+.|||.++|++...
T Consensus 12 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~t 48 (200)
T 2hyj_A 12 ATRGRILGRAAEIASEEGLDGITIGRLAEELEMSKSG 48 (200)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHH
T ss_pred ccHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChHH
Confidence 4567776654 557875 8999999999987644
No 296
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=45.77 E-value=13 Score=29.32 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=21.5
Q ss_pred HHHHHHHHHcCCc-eehhhhhhhcCCCHHH
Q 023862 85 NRAMDAVDACNRR-VTIGDVAGKAGLKLNE 113 (276)
Q Consensus 85 ~rim~Ave~lg~r-vTvgDVAa~aGL~l~~ 113 (276)
...++.+.+.||. +|+.|||.++|++...
T Consensus 18 ~aA~~lF~~~Gy~~ts~~~IA~~aGvsk~t 47 (202)
T 2i10_A 18 QTAMELFWRQGYEGTSITDLTKALGINPPS 47 (202)
T ss_dssp HHHHHHHHHHTTTTCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHhCcccCCHHHHHHHhCCChHH
Confidence 3334556678876 8899999999987543
No 297
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=45.37 E-value=4.4 Score=34.86 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=0.0
Q ss_pred CceehhhhhhhcCCCHHHHHHHHH
Q 023862 96 RRVTIGDVAGKAGLKLNEAQKALQ 119 (276)
Q Consensus 96 ~rvTvgDVAa~aGL~l~~Ae~aL~ 119 (276)
.++|+.|||.++|+|...+-++|+
T Consensus 3 ~~~ti~diA~~agVS~~TVSr~Ln 26 (339)
T 3h5o_A 3 LGVTMHDVAKAAGVSAITVSRVLN 26 (339)
T ss_dssp ------------------------
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Confidence 479999999999999999988885
No 298
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=45.28 E-value=4.5 Score=34.74 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=0.0
Q ss_pred CceehhhhhhhcCCCHHHHHHHHHH
Q 023862 96 RRVTIGDVAGKAGLKLNEAQKALQA 120 (276)
Q Consensus 96 ~rvTvgDVAa~aGL~l~~Ae~aL~a 120 (276)
.++|+.|||.++|+|...+-++|+.
T Consensus 4 ~~~ti~diA~~agVS~~TVSrvln~ 28 (332)
T 2o20_A 4 STTTIYDVARVAGVSMATVSRVVNG 28 (332)
T ss_dssp -------------------------
T ss_pred CCCcHHHHHHHHCCCHHHHHHHHcC
Confidence 4789999999999999999888875
No 299
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=45.26 E-value=15 Score=31.48 Aligned_cols=59 Identities=15% Similarity=0.121 Sum_probs=42.3
Q ss_pred CCCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcCc
Q 023862 78 KLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (276)
Q Consensus 78 ~l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP~ 143 (276)
-|...++-.|.+++.+ +..|+.|+|+++|++..-.++=|+.|++ -|-|+.. .| .|.-.+
T Consensus 22 ~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~~~~~l~r~L~~L~~--~g~l~~~-~~--~y~~t~ 80 (335)
T 2r3s_A 22 AIKAAVELNVFTAISQ--GIESSQSLAQKCQTSERGMRMLCDYLVI--IGFMTKQ-AE--GYRLTS 80 (335)
T ss_dssp HHHHHHHTTHHHHHTT--SEECHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE-TT--EEEECH
T ss_pred HHHHHHHcChHHHHhc--CCCCHHHHHHHhCCCchHHHHHHHHHHh--cCCeEec-CC--EEecCH
Confidence 3444555666677764 6799999999999999999999999886 4666642 23 455443
No 300
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=45.26 E-value=34 Score=25.88 Aligned_cols=43 Identities=12% Similarity=0.187 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHc-CCceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023862 83 VRNRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (276)
Q Consensus 83 ~~~rim~Ave~l-g~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~ 125 (276)
.+-.++..+.+. ++.+|+.|+|...|++...+-+.|..|..+.
T Consensus 38 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~G 81 (127)
T 2frh_A 38 EEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQED 81 (127)
T ss_dssp HHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 456788888775 3679999999999999999999999998874
No 301
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=45.11 E-value=14 Score=30.14 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=24.3
Q ss_pred chhhHHHHHH----HHHcCC-ceehhhhhhhcCCCHH
Q 023862 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLN 112 (276)
Q Consensus 81 ~~~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~ 112 (276)
...+.+|++| +.+.|+ .+|+.|||.++|++..
T Consensus 22 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~ 58 (231)
T 2zcx_A 22 QQREEAILDAARELGTERGIREITLTDIAATVGMHKS 58 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHH
Confidence 3456667665 456787 6999999999998864
No 302
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=44.73 E-value=7 Score=30.10 Aligned_cols=32 Identities=13% Similarity=0.197 Sum_probs=24.5
Q ss_pred hhhHHHHHHH----HHcCCc-eehhhhhhhcCCCHHH
Q 023862 82 DVRNRAMDAV----DACNRR-VTIGDVAGKAGLKLNE 113 (276)
Q Consensus 82 ~~~~rim~Av----e~lg~r-vTvgDVAa~aGL~l~~ 113 (276)
+.|++|++|. .+.||. +|+.|||.++|++...
T Consensus 18 ~~R~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t 54 (212)
T 3loc_A 18 AKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTN 54 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHH
Confidence 4567777665 467864 9999999999988654
No 303
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=44.72 E-value=4.6 Score=39.88 Aligned_cols=56 Identities=18% Similarity=0.306 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc---------CCceEeecCcc
Q 023862 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT---------DGFLEVSDEGD 136 (276)
Q Consensus 81 ~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~---------~GhLeVSesGD 136 (276)
+++..+|++++++.+..++..++|...|++.+.+-.++..|.+.. .-..+.|++|+
T Consensus 4 ~~~~~~iL~~l~~~~~~~~~~~~a~~~~~~~~~v~~~~~~L~~~~~~v~~~~~~~~~~~Lt~eg~ 68 (508)
T 3l4g_A 4 GQVAELLLRRLEASDGGLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKHWELTAEGE 68 (508)
T ss_dssp -----------------------------------------------------------------
T ss_pred hHHHHHHHHHHHhcCCCcCHHHHHHHcCCCHHHHHHHHHHHHhCCCeEEEEEEEEEEEEECHHHH
Confidence 457889999999877567889999999999999999999998874 33445556664
No 304
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=44.58 E-value=15 Score=30.39 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=24.6
Q ss_pred chhhHHHHHH----HHHcCCc-eehhhhhhhcCCCHHH
Q 023862 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (276)
Q Consensus 81 ~~~~~rim~A----ve~lg~r-vTvgDVAa~aGL~l~~ 113 (276)
.+.+.+|++| +.+.|+. +|+.|||.++|++...
T Consensus 47 ~~tr~~Il~AA~~lf~e~G~~~~Ti~~IA~~AGvs~~t 84 (260)
T 2of7_A 47 TRTREAIRAATYGLIRQQGYEATTVEQIAERAEVSPST 84 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccHHHHHHHhCCChHH
Confidence 3456666665 5556875 9999999999988653
No 305
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=44.56 E-value=29 Score=27.99 Aligned_cols=58 Identities=14% Similarity=0.254 Sum_probs=44.1
Q ss_pred hhhHHHHHHHHHc-CCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeec---CccEEEEc
Q 023862 82 DVRNRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD---EGDVLYVF 141 (276)
Q Consensus 82 ~~~~rim~Ave~l-g~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSe---sGDIlYvF 141 (276)
..+-.++.++... ++.+|+.|+|...|++...+-+.|..|..+ |-++-.. ++-..|+.
T Consensus 41 ~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~--GlV~r~~~~~DrR~~~l~ 102 (189)
T 3nqo_A 41 SRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKN--GYVDVIPSPHDKRAINVK 102 (189)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEEEECSSCSSCEEEE
T ss_pred HHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEeccCCCCCCeeEEE
Confidence 3557788888875 578999999999999999999999999876 5555432 34444443
No 306
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=44.51 E-value=7.3 Score=29.81 Aligned_cols=31 Identities=10% Similarity=0.182 Sum_probs=23.2
Q ss_pred hhhHHHHHH----HHHcCC-ceehhhhhhhcCCCHH
Q 023862 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLN 112 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~ 112 (276)
+.+.+|+++ +.+.|+ .+|+.|||.++|++..
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~ti~~IA~~agvs~~ 46 (204)
T 3eup_A 11 RTRQFIIESTAPVFNVKGLAGTSLTDLTEATNLTKG 46 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcH
Confidence 456666655 456676 5899999999998764
No 307
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=44.43 E-value=14 Score=29.11 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=24.7
Q ss_pred CchhhHHHHHHHH----HcCC-ceehhhhhhhcCCCHH
Q 023862 80 PADVRNRAMDAVD----ACNR-RVTIGDVAGKAGLKLN 112 (276)
Q Consensus 80 ~~~~~~rim~Ave----~lg~-rvTvgDVAa~aGL~l~ 112 (276)
..+.+.+|++|.. +.|+ .+|+.|||.++|++..
T Consensus 10 ~~~tr~~Il~aA~~l~~e~G~~~~s~~~IA~~agvs~~ 47 (198)
T 3cjd_A 10 KAALREKLIDLAEAQIEAEGLASLRARELARQADCAVG 47 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHHHhCChhhcCHHHHHHHhCCCcc
Confidence 3456777777654 4576 7899999999998753
No 308
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=44.26 E-value=4.7 Score=35.12 Aligned_cols=26 Identities=38% Similarity=0.516 Sum_probs=0.0
Q ss_pred CCceehhhhhhhcCCCHHHHHHHHHH
Q 023862 95 NRRVTIGDVAGKAGLKLNEAQKALQA 120 (276)
Q Consensus 95 g~rvTvgDVAa~aGL~l~~Ae~aL~a 120 (276)
..++|+.|||.++|+|...+-++|+.
T Consensus 6 ~~~~ti~dvA~~aGVS~~TVSrvLn~ 31 (348)
T 3bil_A 6 KFRPTLKDVARQAGVSIATASRALAD 31 (348)
T ss_dssp --------------------------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCC
Confidence 34689999999999999999988875
No 309
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=44.24 E-value=9.1 Score=27.45 Aligned_cols=23 Identities=35% Similarity=0.341 Sum_probs=18.8
Q ss_pred CceehhhhhhhcCCCHHHHHHHH
Q 023862 96 RRVTIGDVAGKAGLKLNEAQKAL 118 (276)
Q Consensus 96 ~rvTvgDVAa~aGL~l~~Ae~aL 118 (276)
..+|+.|||..+|++...+-+.|
T Consensus 8 ~~~t~~diA~~aGVS~sTVSr~l 30 (67)
T 2l8n_A 8 TAATMKDVALKAKVSTATVSRAL 30 (67)
T ss_dssp -CCCHHHHHHHTTCCHHHHHHTT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHH
Confidence 35899999999999998886544
No 310
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.19 E-value=43 Score=26.02 Aligned_cols=43 Identities=21% Similarity=0.273 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHcCC-ceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023862 82 DVRNRAMDAVDACNR-RVTIGDVAGKAGLKLNEAQKALQALAAD 124 (276)
Q Consensus 82 ~~~~rim~Ave~lg~-rvTvgDVAa~aGL~l~~Ae~aL~aLAsD 124 (276)
+....|++.++..|. +++..|+..+++|+..++.+.|..|-+.
T Consensus 37 ~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~k 80 (95)
T 2yu3_A 37 NQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESK 80 (95)
T ss_dssp HHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 456678999987655 6999999999999999999999999654
No 311
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=43.48 E-value=29 Score=27.11 Aligned_cols=47 Identities=15% Similarity=0.384 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHcC----CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023862 83 VRNRAMDAVDACN----RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (276)
Q Consensus 83 ~~~rim~Ave~lg----~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeV 131 (276)
.+-.++..+...+ +.+|++|+|...|++...+-+.+..|..+ |-+++
T Consensus 34 ~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~--glVr~ 84 (148)
T 4fx0_A 34 TQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRRD--GLVRV 84 (148)
T ss_dssp HHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHHT--TSBC-
T ss_pred HHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHC--CCEEe
Confidence 4567888887665 46999999999999999999999999776 55554
No 312
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=43.47 E-value=25 Score=28.43 Aligned_cols=60 Identities=10% Similarity=0.168 Sum_probs=47.0
Q ss_pred CchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEE
Q 023862 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYV 140 (276)
Q Consensus 80 ~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYv 140 (276)
+.+.-+++++-|-+. .-+|+.-|+.+-.+....|+++|+.|.+..-=.+=+....-.||.
T Consensus 44 Dk~t~dkl~KEVpk~-KlITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V~kh~~q~IYT 103 (108)
T 3iz6_V 44 DKATYDKLLSEVPKY-KQITPSVLSERLRINGSLARQAIKDLESRGAIRVVSVHSSQLIYT 103 (108)
T ss_dssp SSHHHHHHHHHHHHH-SSEEEHHHHHHHHTCCHHHHHHHHHHHHHHTSCEECCCTTSCCEE
T ss_pred CHHHHHHHHHHccCC-eEEeHHHHHhhhcccHHHHHHHHHHHHHCCCEEEEecCCCEEEEe
Confidence 455667788877775 679999999999999999999999999987555444445556664
No 313
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=43.39 E-value=5 Score=39.65 Aligned_cols=51 Identities=16% Similarity=0.249 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCc
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG 135 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesG 135 (276)
..++.|++.+++.| .+|-.||+..+|++..+|.+.|..|..+ |.|+-.-.|
T Consensus 516 ~~~~~I~~~l~~~g-~it~~di~~l~~ls~~qa~~~L~~Lv~~--G~l~~~G~g 566 (583)
T 3lmm_A 516 ELTNAAMLWLSEVG-DLATSDLMAMCGVSRGTAKACVDGLVDE--ERVVAVGGG 566 (583)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHcC-CcCHHHHHHHHCCCHHHHHHHHHHHHHC--CcEEEeCCC
Confidence 34567888888865 5999999999999999999999999876 556544333
No 314
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=43.38 E-value=29 Score=27.41 Aligned_cols=48 Identities=15% Similarity=0.244 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHcC-------CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 83 VRNRAMDAVDACN-------RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 83 ~~~rim~Ave~lg-------~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
++.|+...+..+. ..+|..|+|...|++...+-+.|..|..+ |-+++.
T Consensus 148 ~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~--g~I~~~ 202 (220)
T 3dv8_A 148 LDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQVE--GLVKLS 202 (220)
T ss_dssp HHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHC--CCEEeC
Confidence 4455555554433 27899999999999999999999999875 555553
No 315
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=43.24 E-value=17 Score=28.59 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=24.1
Q ss_pred chhhHHHHHHH----HHcCCceehhhhhhhcCCCHHH
Q 023862 81 ADVRNRAMDAV----DACNRRVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 81 ~~~~~rim~Av----e~lg~rvTvgDVAa~aGL~l~~ 113 (276)
.+.+.+|++|. .+.|..+|+.|||.++|++...
T Consensus 19 ~~~r~~Il~aA~~lf~~~G~~~s~~~IA~~aGvs~~t 55 (215)
T 2hku_A 19 RQTRDALFTAATELFLEHGEGVPITQICAAAGAHPNQ 55 (215)
T ss_dssp -CHHHHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHH
Confidence 34566676654 3446899999999999988654
No 316
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=42.94 E-value=21 Score=32.11 Aligned_cols=57 Identities=18% Similarity=0.154 Sum_probs=40.6
Q ss_pred cccCCCCchhhHHHHHHHHHcC-CceehhhhhhhcCC--CHH---HHHHHHHHHHhhcCCceEee
Q 023862 74 VESDKLPADVRNRAMDAVDACN-RRVTIGDVAGKAGL--KLN---EAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 74 v~~~~l~~~~~~rim~Ave~lg-~rvTvgDVAa~aGL--~l~---~Ae~aL~aLAsD~~GhLeVS 132 (276)
+.+--|-..++-.|-+++.+.| +..|+.|+|+++|+ +.. -.++=|++|++ .|-|+.+
T Consensus 32 ~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~--~g~l~~~ 94 (364)
T 3p9c_A 32 VLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLAS--YNVVTCL 94 (364)
T ss_dssp HHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHH--TTSEEEE
T ss_pred HHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHh--CCCEEEe
Confidence 3334445566677888888875 67999999999998 554 56677778876 4555544
No 317
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=42.90 E-value=31 Score=25.28 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=28.2
Q ss_pred HHHHHHHHHc-CCceehhhhhhhcCCCHHHHHHHHHHH
Q 023862 85 NRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQAL 121 (276)
Q Consensus 85 ~rim~Ave~l-g~rvTvgDVAa~aGL~l~~Ae~aL~aL 121 (276)
.++++.+++. ....|+.|+|...|++....++.+...
T Consensus 5 ~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 5 RQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4566666654 567999999999999988877666543
No 318
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=42.88 E-value=14 Score=34.31 Aligned_cols=38 Identities=16% Similarity=0.299 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCC------ceehhhhhhhcCCCHHHHHHHHHHHH
Q 023862 85 NRAMDAVDACNR------RVTIGDVAGKAGLKLNEAQKALQALA 122 (276)
Q Consensus 85 ~rim~Ave~lg~------rvTvgDVAa~aGL~l~~Ae~aL~aLA 122 (276)
..|++.+.+... .+|+.|++..||+..+++-.+|+.|-
T Consensus 194 ~~i~~~L~~~~~~~~~~~~isi~~is~~T~i~~~Dii~tL~~l~ 237 (280)
T 2ou2_A 194 QTILEILMGLKSESGERPQITINEISEITSIKKEDVISTLQYLN 237 (280)
T ss_dssp HHHHHHC-----------CCBHHHHHHHHCBCHHHHHHHHHHTT
T ss_pred HHHHHHHHhcccccCCCCceeHHHHHHHhCCCHHHHHHHHHHCC
Confidence 556666665555 79999999999999999999998863
No 319
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=42.75 E-value=16 Score=27.76 Aligned_cols=45 Identities=11% Similarity=0.338 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeV 131 (276)
.+-.++..+ .++.+|++|+|...|++...+-+.|..|..+ |-++.
T Consensus 39 ~q~~iL~~l--~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~--Glv~r 83 (151)
T 3kp7_A 39 EQSHVLNML--SIEALTVGQITEKQGVNKAAVSRRVKKLLNA--ELVKL 83 (151)
T ss_dssp HHHHHHHHH--HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHT--TSEEC
T ss_pred HHHHHHHHH--HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEe
Confidence 456788899 5677999999999999999999999999887 56653
No 320
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=42.73 E-value=15 Score=29.53 Aligned_cols=31 Identities=16% Similarity=0.209 Sum_probs=23.7
Q ss_pred hhhHHHHHH----HHHcCC-ceehhhhhhhcCCCHH
Q 023862 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLN 112 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~ 112 (276)
..|.+|++| +.+.|| .+|+.|||.++|++..
T Consensus 14 ~~R~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~~ 49 (208)
T 3v6g_A 14 GRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVG 49 (208)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCch
Confidence 446677665 566787 5899999999998754
No 321
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=42.69 E-value=6 Score=31.10 Aligned_cols=30 Identities=13% Similarity=0.135 Sum_probs=4.3
Q ss_pred hhHHHHHHHHHcCCc-eehhhhhhhcCCCHH
Q 023862 83 VRNRAMDAVDACNRR-VTIGDVAGKAGLKLN 112 (276)
Q Consensus 83 ~~~rim~Ave~lg~r-vTvgDVAa~aGL~l~ 112 (276)
+-...++.+.+.|+. +|+.|||.++|++..
T Consensus 35 Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~ 65 (212)
T 2np3_A 35 ILTAARVCFAERGFDATSLRRIAETAGVDQS 65 (212)
T ss_dssp CHHHHHHHC----------------------
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHcCCCHH
Confidence 334445556667886 999999999998754
No 322
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=42.58 E-value=68 Score=27.10 Aligned_cols=60 Identities=13% Similarity=0.086 Sum_probs=43.5
Q ss_pred CCCchhhHHHHHHHHHc-CCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEE
Q 023862 78 KLPADVRNRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVL 138 (276)
Q Consensus 78 ~l~~~~~~rim~Ave~l-g~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIl 138 (276)
.|+..-+..+..+++.. |..+++.++|...|++.....+-|..+.-+ .|-++.+..|.++
T Consensus 244 ~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~-~~li~~~~~g~~~ 304 (324)
T 1hqc_A 244 GLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIR-QGLLKRTPRGRVP 304 (324)
T ss_dssp CCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHH-TTSEEEETTEEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHH-hcchhcCCcccee
Confidence 34444445556666665 456889999999999999999988885554 4677877777654
No 323
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=42.13 E-value=24 Score=28.55 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=24.2
Q ss_pred hhhHHHH----HHHHHcCC-ceehhhhhhhcCCCHHH
Q 023862 82 DVRNRAM----DAVDACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 82 ~~~~rim----~Ave~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
..+.+|+ +.+.+.|+ .+|+.|||.++|++...
T Consensus 7 ~~r~~Il~aA~~l~~~~G~~~~tv~~Ia~~agvs~~t 43 (213)
T 3ni7_A 7 PMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDE 43 (213)
T ss_dssp HHHHHHHHHHHHHHHHSCSTTCCHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHH
Confidence 3455554 55677896 69999999999998764
No 324
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=42.09 E-value=31 Score=30.16 Aligned_cols=41 Identities=7% Similarity=0.054 Sum_probs=36.2
Q ss_pred hHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023862 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (276)
Q Consensus 84 ~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD 124 (276)
.+.-++++-.+++.|+..|+|...|++...+..+|..|...
T Consensus 17 ~EdYLk~I~~L~~~V~~~~LA~~LgvS~~SV~~~lkkL~e~ 57 (200)
T 2p8t_A 17 VEDVLAVIFLLKEPLGRKQISERLELGEGSVRTLLRKLSHL 57 (200)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCccHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 36667777788888999999999999999999999999875
No 325
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=41.65 E-value=2.4 Score=31.58 Aligned_cols=37 Identities=16% Similarity=0.399 Sum_probs=30.3
Q ss_pred cCCce-ehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 94 CNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 94 lg~rv-TvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
.|.++ |+.|+|.+-|+|...++++|..|.++ |-++..
T Consensus 31 ~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~--Gli~~~ 68 (102)
T 1v4r_A 31 PGDTLPSVADIRAQFGVAAKTVSRALAVLKSE--GLVSSR 68 (102)
T ss_dssp TTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTS--SCCEEE
T ss_pred CcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEe
Confidence 45666 99999999999999999999999754 455543
No 326
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=41.61 E-value=23 Score=31.22 Aligned_cols=65 Identities=11% Similarity=0.170 Sum_probs=46.3
Q ss_pred cccccCCCCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcCc
Q 023862 72 RIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (276)
Q Consensus 72 ~~v~~~~l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP~ 143 (276)
|.+.+--|...++-.|.+++.+ +..|+.|+|+++|++..-.++=|+.|++ -|-|+..+ + .|.-..
T Consensus 41 ~~~~~~~l~~a~~lgif~~L~~--~~~t~~eLA~~~g~~~~~l~rlLr~L~~--~gll~~~~--~-~y~~t~ 105 (359)
T 1x19_A 41 GLIEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGSVPPRLEMLLETLRQ--MRVINLED--G-KWSLTE 105 (359)
T ss_dssp HHHHHHHHHHHHHHTHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEET--T-EEEECH
T ss_pred HHHHHHHHHHHHHcCcHHHHcC--CCCCHHHHHHHhCcChHHHHHHHHHHHh--CCCeEeeC--C-eEecCH
Confidence 3344444555566666777764 5799999999999999999999999886 56666543 3 566544
No 327
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=41.52 E-value=27 Score=26.30 Aligned_cols=47 Identities=11% Similarity=0.191 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
.+-.++..+.+ .+.+|+.|+|...|++...+-+.|..|..+ |-++-.
T Consensus 37 ~q~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~--Glv~r~ 83 (140)
T 3hsr_A 37 TGYIVLMAIEN-DEKLNIKKLGERVFLDSGTLTPLLKKLEKK--DYVVRT 83 (140)
T ss_dssp HHHHHHHHSCT-TCEEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHH-cCCcCHHHHHHHHCCChhhHHHHHHHHHHC--CCeEec
Confidence 45678888876 458999999999999999999999999876 555543
No 328
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=41.38 E-value=94 Score=22.13 Aligned_cols=47 Identities=11% Similarity=0.095 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHcCCceehhhh----hhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 83 VRNRAMDAVDACNRRVTIGDV----AGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDV----Aa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
.+..|+.++.+. +..|+.|+ |...|++...+-+.|..|..+ |-++-.
T Consensus 9 ~q~~iL~~l~~~-~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~--gli~r~ 59 (99)
T 1tbx_A 9 PEAIVLAYLYDN-EGIATYDLYKKVNAEFPMSTATFYDAKKFLIQE--GFVKER 59 (99)
T ss_dssp HHHHHHHHHTTC-TTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCEEEE
Confidence 356788888764 56999999 999999999999999999887 555443
No 329
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=41.29 E-value=38 Score=30.74 Aligned_cols=41 Identities=7% Similarity=0.097 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHc-CCceehhhhhhhcCCCHHHHHHHHHHHHh
Q 023862 83 VRNRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQALAA 123 (276)
Q Consensus 83 ~~~rim~Ave~l-g~rvTvgDVAa~aGL~l~~Ae~aL~aLAs 123 (276)
.+.+|++.+++. |..+|..++|.+.|+|...+.+.+..|-+
T Consensus 4 ~~~~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~ 45 (323)
T 3rkx_A 4 YSQDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKL 45 (323)
T ss_dssp HHHHHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 467899999865 56899999999999999999999999975
No 330
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=40.90 E-value=13 Score=25.04 Aligned_cols=33 Identities=15% Similarity=0.062 Sum_probs=23.0
Q ss_pred chhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHH
Q 023862 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQ 115 (276)
Q Consensus 81 ~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae 115 (276)
+.+-.++-++.++. +.|..|+|.++|++.....
T Consensus 9 ~~~~~~l~~~r~~~--glsq~~lA~~~gis~~~i~ 41 (77)
T 2b5a_A 9 RKFGRTLKKIRTQK--GVSQEELADLAGLHRTYIS 41 (77)
T ss_dssp HHHHHHHHHHHHHT--TCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHCCCHHHHH
Confidence 34445555555554 4799999999999976653
No 331
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=40.70 E-value=34 Score=25.12 Aligned_cols=37 Identities=3% Similarity=0.054 Sum_probs=29.1
Q ss_pred HHHHHHHHHc-CCceehhhhhhhcCCCHHHHHHHHHHH
Q 023862 85 NRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQAL 121 (276)
Q Consensus 85 ~rim~Ave~l-g~rvTvgDVAa~aGL~l~~Ae~aL~aL 121 (276)
.++++.+++. ....|+.|+|...|++....++.+...
T Consensus 8 ~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 8 QNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4566677665 567999999999999998887776654
No 332
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=40.58 E-value=16 Score=32.07 Aligned_cols=63 Identities=17% Similarity=0.191 Sum_probs=45.4
Q ss_pred cccCCCCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcC
Q 023862 74 VESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (276)
Q Consensus 74 v~~~~l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP 142 (276)
+.+.-|....+-.|.+.+. ++..|+.|+|.++|++....++=|+.|++ -|-|+..++| .|.-.
T Consensus 31 ~~~~~l~~~~~l~i~~~l~--~~~~t~~ela~~~~~~~~~l~r~L~~L~~--~g~~~~~~~g--~y~~t 93 (360)
T 1tw3_A 31 HTPMVVRTAATLRLVDHIL--AGARTVKALAARTDTRPEALLRLIRHLVA--IGLLEEDAPG--EFVPT 93 (360)
T ss_dssp HHHHHHHHHHHTTHHHHHH--TTCCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEETT--EEEEC
T ss_pred HHHHHHHHHHHhCHHHHHh--CCCCCHHHHHHHhCcCHHHHHHHHHHHHH--CCCEEecCCC--eEEeC
Confidence 3344455566777788884 45699999999999999999999999876 4556554555 35543
No 333
>1wrj_A Methylated-DNA--protein-cysteine methyltransferase; 2.00A {Sulfolobus tokodaii}
Probab=40.48 E-value=28 Score=29.17 Aligned_cols=73 Identities=15% Similarity=0.085 Sum_probs=49.4
Q ss_pred chhhHHHHHHHHHc--CCceehhhhhhhcCCCHHHHHHHHHH--HHhhcCCceEeecCccEEEEcCcchHHHhhhhhHHH
Q 023862 81 ADVRNRAMDAVDAC--NRRVTIGDVAGKAGLKLNEAQKALQA--LAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRL 156 (276)
Q Consensus 81 ~~~~~rim~Ave~l--g~rvTvgDVAa~aGL~l~~Ae~aL~a--LAsD~~GhLeVSesGDIlYvFP~nfRs~L~~Ks~r~ 156 (276)
.+.+.++.+++.+. |.-+|-||||...|.+-..+-.++.. ++-...||==|..+| + =-|. .=+..|.+.+
T Consensus 70 t~fq~~V~~~l~~IP~G~~~tYg~iA~~~g~p~RaVG~A~~~np~~~~iPcHRVv~~~G-l-~gy~----~G~~~k~~LL 143 (156)
T 1wrj_A 70 NEFRIRVFKEVMRIKWGEVRTYKQVADAVKTSPRAVGTALSKNNVLLIIPCHRVIGEKS-L-GGYS----RGVELKRKLL 143 (156)
T ss_dssp CHHHHHHHHHHTTSCTTCCEEHHHHHHHTTSCHHHHHHHHHTCSBTTTSCGGGEECSSS-C-CCCT----TCHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCceEcHHHHHHHhCCCccHHHHHHHhCCCCCccCCCeEECCCC-C-CCCC----ccHHHHHHHH
Confidence 46788999999998 66688899999999998333333332 223469999999999 5 3333 2234454444
Q ss_pred hHH
Q 023862 157 KVE 159 (276)
Q Consensus 157 rl~ 159 (276)
.+|
T Consensus 144 ~~E 146 (156)
T 1wrj_A 144 ELE 146 (156)
T ss_dssp HHT
T ss_pred HHc
Confidence 443
No 334
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=40.48 E-value=47 Score=27.50 Aligned_cols=43 Identities=12% Similarity=0.030 Sum_probs=37.5
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~ 125 (276)
..+-.||..+...+ .+|+.|+|...|++...+-+.|..|..+.
T Consensus 48 ~~q~~iL~~L~~~~-~~t~~eLa~~l~i~~stvs~~l~~Le~~G 90 (207)
T 2fxa_A 48 INEHHILWIAYQLN-GASISEIAKFGVMHVSTAFNFSKKLEERG 90 (207)
T ss_dssp HHHHHHHHHHHHHT-SEEHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCC-CcCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 45577899998775 69999999999999999999999998874
No 335
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=40.41 E-value=28 Score=28.06 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=45.0
Q ss_pred CchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEE
Q 023862 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYV 140 (276)
Q Consensus 80 ~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYv 140 (276)
+.+.-+++++-|-+. .-+|+.-|+.+-.+....|+++|+.|.+..-=.+=+-...-.||.
T Consensus 43 Dk~t~dkl~KEVpk~-KlITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V~kh~~q~IYT 102 (108)
T 3u5c_Z 43 DQEKYDRILKEVPTY-RYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYT 102 (108)
T ss_dssp TTHHHHHHHHHCSSC-SSBSHHHHHHTTCCCTTHHHHHHHHHSSSSSCEEEECCSSCCEEE
T ss_pred CHHHHHHHHHHccCC-eEEeHHHhhhhhhhhHHHHHHHHHHHHHCCCEEEEecCCCEEEEe
Confidence 355566677666653 569999999999999999999999998876544444445556775
No 336
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.28 E-value=26 Score=32.38 Aligned_cols=76 Identities=11% Similarity=0.145 Sum_probs=30.9
Q ss_pred CCceehhhhhhhcCCCHHHHHHHHHHHHhhc--CCce-EeecCccEEEEcCcchHHHhhhhhHHHhHHHHHHHHhhhhhh
Q 023862 95 NRRVTIGDVAGKAGLKLNEAQKALQALAADT--DGFL-EVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEY 171 (276)
Q Consensus 95 g~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~--~GhL-eVSesGDIlYvFP~nfRs~L~~Ks~r~rl~~~~~k~w~v~~Y 171 (276)
...+|..++|...|++.+++|.-|...-++. .|.+ ||+..=++-++=||+++.- +=+..+.+|+.|-.++..++..
T Consensus 305 ~~~i~f~~ia~~l~i~~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~-q~~~l~~~L~~W~~~v~~l~~~ 383 (393)
T 4b4t_O 305 IRMLSFEDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGD-QITKMKDRLVEWNDQVEKLGKK 383 (393)
T ss_dssp CCCEEHHHHHHHHTCCHHHHHHHHHHHHHHSCSSSCEETTTTEECC----------------------------------
T ss_pred CCcCcHHHHHHHhCcCHHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEeccCCCCCHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4569999999999999999998888777665 5544 2222222224446666531 1144566788887777666543
No 337
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=40.06 E-value=61 Score=25.26 Aligned_cols=49 Identities=14% Similarity=0.233 Sum_probs=36.2
Q ss_pred hhhHHHHHHHHHcC-------------CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 82 DVRNRAMDAVDACN-------------RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 82 ~~~~rim~Ave~lg-------------~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
+.+.|+...+..+. ..+|..|+|...|++...+-+.|..|..+ |-+++.
T Consensus 139 ~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~--g~I~~~ 200 (210)
T 3ryp_A 139 DVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQ--NLISAH 200 (210)
T ss_dssp CHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred CHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHhCCcHHHHHHHHHHHHHC--CcEEeC
Confidence 34566666655432 15788999999999999999999999875 445543
No 338
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=39.76 E-value=25 Score=30.42 Aligned_cols=53 Identities=11% Similarity=0.105 Sum_probs=39.3
Q ss_pred CCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCc
Q 023862 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG 135 (276)
Q Consensus 79 l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesG 135 (276)
|...++-.|.+++.+ +..|+.|+|+++|++..-.++=|+.|++ -|-|+..+.|
T Consensus 25 l~~~~~lgi~~~l~~--~~~t~~ela~~~~~~~~~l~r~Lr~L~~--~g~l~~~~~~ 77 (334)
T 2ip2_A 25 VYVATRLGLADLIES--GIDSDETLAAAVGSDAERIHRLMRLLVA--FEIFQGDTRD 77 (334)
T ss_dssp HHHHHHTTHHHHHHT--TCCSHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEETTT
T ss_pred HHHHHHcCcHHHHhC--CCCCHHHHHHHhCcCHHHHHHHHHHHHh--CCceEecCCC
Confidence 334455566777754 5799999999999999999999999986 4555554433
No 339
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=39.64 E-value=76 Score=25.02 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHHc-----------CCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023862 82 DVRNRAMDAVDAC-----------NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (276)
Q Consensus 82 ~~~~rim~Ave~l-----------g~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeV 131 (276)
+...|+...+.++ ...+|..|+|...|++.+.+-+.|..|..+ |-+++
T Consensus 152 ~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~--g~I~~ 210 (227)
T 3dkw_A 152 NATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHRLGDE--GIIHL 210 (227)
T ss_dssp HHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTTSCHHHHHHHHHHHHHH--TSEEE
T ss_pred CHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHC--CcEEe
Confidence 4456776666442 346788999999999999999999999887 44444
No 340
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=39.63 E-value=80 Score=26.94 Aligned_cols=56 Identities=13% Similarity=0.046 Sum_probs=37.6
Q ss_pred CCCCchhhHHHHHHHHHcCCceehhhhhhhcC-----------CC---HHHHHHHHHHHHhhcCCceEee
Q 023862 77 DKLPADVRNRAMDAVDACNRRVTIGDVAGKAG-----------LK---LNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 77 ~~l~~~~~~rim~Ave~lg~rvTvgDVAa~aG-----------L~---l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
.++..+.|++|+++++++||+....--+.+++ ++ -.+.-+++..-|.+.|-+|.+.
T Consensus 25 ~~vs~~tr~rV~~~a~~lgY~pn~~ar~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~ 94 (340)
T 1qpz_A 25 RFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILG 94 (340)
T ss_dssp SCCCHHHHHHHHHHHHHHTCCCCHHHHHHHHTCCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCHHHHhhccCCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEE
Confidence 46889999999999999999865432222222 11 2345577777788888777653
No 341
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=39.61 E-value=23 Score=32.95 Aligned_cols=38 Identities=11% Similarity=0.299 Sum_probs=28.8
Q ss_pred hHHHHHHHHH-cCCceehhhhhhhcCCCHHHHHHHHHHH
Q 023862 84 RNRAMDAVDA-CNRRVTIGDVAGKAGLKLNEAQKALQAL 121 (276)
Q Consensus 84 ~~rim~Ave~-lg~rvTvgDVAa~aGL~l~~Ae~aL~aL 121 (276)
+..|++.+.+ .+..+|+.|++..||+..+++-.+|+.|
T Consensus 200 ~~~il~~L~~~~~~~isi~~is~~T~i~~~DIi~tL~~l 238 (284)
T 2ozu_A 200 KSVILECLYHQNDKQISIKKLSKLTGICPQDITSTLHHL 238 (284)
T ss_dssp HHHHHHHHHHC-----CHHHHHHHHCBCHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCcEeHHHHHHHhCCCHHHHHHHHHHC
Confidence 3567777765 4678999999999999999999999987
No 342
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=39.57 E-value=9.3 Score=30.39 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=23.6
Q ss_pred hhhHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023862 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
+.+.+|++| +.+.|+ .+|+.|||.++|++...
T Consensus 3 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~AGvskgt 39 (208)
T 2g3b_A 3 ERRDAILKASATAIAQRGIRGLRVNDVAEVAGVSPGL 39 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHH
Confidence 445666554 566787 59999999999987643
No 343
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=39.53 E-value=40 Score=25.66 Aligned_cols=41 Identities=12% Similarity=0.183 Sum_probs=31.7
Q ss_pred chhhHHHHHHHHHc-CCceehhhhhhhcCCCHHHHHHHHHHH
Q 023862 81 ADVRNRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQAL 121 (276)
Q Consensus 81 ~~~~~rim~Ave~l-g~rvTvgDVAa~aGL~l~~Ae~aL~aL 121 (276)
...-.++++.+++. ....|+.|+|...|++....++.+...
T Consensus 10 ~~~i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 10 AITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp HHHHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34456778888776 667999999999999998887666544
No 344
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=39.48 E-value=22 Score=28.71 Aligned_cols=36 Identities=14% Similarity=0.276 Sum_probs=26.4
Q ss_pred CCchhhHHHHHH----HHHcCCc-eehhhhhhhcCCCHHHH
Q 023862 79 LPADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (276)
Q Consensus 79 l~~~~~~rim~A----ve~lg~r-vTvgDVAa~aGL~l~~A 114 (276)
-..+.+.+|+++ +.+.|+. +|+.|||.++|++....
T Consensus 13 ~~~~~r~~il~aA~~l~~~~G~~~~s~~~IA~~agvs~~t~ 53 (216)
T 2oi8_A 13 YRTQVRAEIKDHAWEQIATAGASALSLNAIAKRMGMSGPAL 53 (216)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTSCCHHHHHHHTTCCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCHHHH
Confidence 345667777665 4556875 99999999999886543
No 345
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=39.31 E-value=59 Score=24.30 Aligned_cols=44 Identities=14% Similarity=0.156 Sum_probs=37.0
Q ss_pred CchhhHHHHHHHHHcCCceehhhhhhhc-CCCHHHHHHHHHHHHhhc
Q 023862 80 PADVRNRAMDAVDACNRRVTIGDVAGKA-GLKLNEAQKALQALAADT 125 (276)
Q Consensus 80 ~~~~~~rim~Ave~lg~rvTvgDVAa~a-GL~l~~Ae~aL~aLAsD~ 125 (276)
....+-.|+..+.. +..|++|+|... |++...+-+.|..|..+.
T Consensus 20 ~~~~~~~IL~~L~~--~~~~~~eLa~~l~~is~~tvs~~L~~Le~~G 64 (112)
T 1z7u_A 20 NGKWKLSLMDELFQ--GTKRNGELMRALDGITQRVLTDRLREMEKDG 64 (112)
T ss_dssp CSTTHHHHHHHHHH--SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHT
T ss_pred cCccHHHHHHHHHh--CCCCHHHHHHHhccCCHHHHHHHHHHHHHCC
Confidence 34445678888874 568999999999 999999999999998875
No 346
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=39.07 E-value=48 Score=30.83 Aligned_cols=58 Identities=21% Similarity=0.233 Sum_probs=43.6
Q ss_pred HHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCc-cEEEEcCcch
Q 023862 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG-DVLYVFPNNY 145 (276)
Q Consensus 85 ~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesG-DIlYvFP~nf 145 (276)
.++++.+.+. ..+|+.+++...|++...|++.|..|... |-|+-...| .-+|++|+-+
T Consensus 300 ~~ll~~l~~~-p~~t~~~~~~~~~~S~~TA~r~L~~L~e~--GiL~~~~~gR~~~y~~~~~l 358 (373)
T 3eqx_A 300 HELVQVIFEQ-PYCRIQNLVESGLAKRQTASVYLKQLCDI--GVLEEVQSGKEKLFVHPKFV 358 (373)
T ss_dssp HHHHHHHHHC-SEEEHHHHHHTSSSCHHHHHHHHHHHHHT--TSCEEC--CCSCEEECHHHH
T ss_pred HHHHHHHHHC-CCccHHHHHHHhCcCHHHHHHHHHHHHHC--CcEEEeCCCCceEeehHHHH
Confidence 4567766554 56999999999999999999999999874 556544433 5789987644
No 347
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=38.77 E-value=6.5 Score=34.16 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=0.0
Q ss_pred ceehhhhhhhcCCCHHHHHHHHHHH
Q 023862 97 RVTIGDVAGKAGLKLNEAQKALQAL 121 (276)
Q Consensus 97 rvTvgDVAa~aGL~l~~Ae~aL~aL 121 (276)
++|+.|||..+|+|...+-++|+..
T Consensus 3 ~~ti~diA~~aGVS~~TVSrvLn~~ 27 (349)
T 1jye_A 3 PVTLYDVAEYAGVSYQTVSRVVNQA 27 (349)
T ss_dssp -------------------------
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcCC
Confidence 5899999999999999998888764
No 348
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=38.63 E-value=58 Score=27.64 Aligned_cols=56 Identities=9% Similarity=0.113 Sum_probs=37.3
Q ss_pred CCCCchhhHHHHHHHHHcCCceehhhhhhhcC-----------C---CHHHHHHHHHHHHhhcCCceEee
Q 023862 77 DKLPADVRNRAMDAVDACNRRVTIGDVAGKAG-----------L---KLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 77 ~~l~~~~~~rim~Ave~lg~rvTvgDVAa~aG-----------L---~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
.++..+.|++|+++++++||+....--+.+++ + --.+.-+++..-|.+.|-+|.+.
T Consensus 27 ~~vs~~tr~rV~~aa~~lgY~pn~~ar~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~ 96 (332)
T 2hsg_A 27 PNVKPSTRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILS 96 (332)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSCHHHHHHTTC-CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCcCHHHHHHHhCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEE
Confidence 46889999999999999999764322121222 1 12455677777777777776654
No 349
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=38.62 E-value=34 Score=27.13 Aligned_cols=39 Identities=10% Similarity=0.016 Sum_probs=31.4
Q ss_pred HHHHHHHH-cCCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023862 86 RAMDAVDA-CNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (276)
Q Consensus 86 rim~Ave~-lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD 124 (276)
++|-.+.+ .+..+|+.|+|.+.|++...+++-|..|...
T Consensus 18 ~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~ 57 (149)
T 1ylf_A 18 HILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQA 57 (149)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34444444 3567999999999999999999999999873
No 350
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=38.47 E-value=49 Score=26.28 Aligned_cols=45 Identities=11% Similarity=0.133 Sum_probs=33.8
Q ss_pred HHHHHHHHc--CCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 86 RAMDAVDAC--NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 86 rim~Ave~l--g~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
++|-.+... +..+|+.++|.+.|++..-+++-|..|... |-++..
T Consensus 15 ~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~a--Glv~s~ 61 (143)
T 3t8r_A 15 TLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNA--GLIRSV 61 (143)
T ss_dssp HHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEEC
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CEEEec
Confidence 345555544 346999999999999999999999999764 345543
No 351
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=38.41 E-value=66 Score=25.00 Aligned_cols=34 Identities=18% Similarity=0.372 Sum_probs=28.7
Q ss_pred ceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 97 RVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 97 rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
++|..|+|...|++...+-+.|..|..+ |-+++.
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~--g~I~~~ 197 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQ--GLVHVK 197 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHC--CCEEec
Confidence 4788999999999999999999999875 445544
No 352
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=38.30 E-value=22 Score=27.56 Aligned_cols=32 Identities=16% Similarity=0.334 Sum_probs=23.3
Q ss_pred hhhHHHHHH----HHHcCCc-eehhhhhhhcCCCHHH
Q 023862 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~r-vTvgDVAa~aGL~l~~ 113 (276)
+.+.+|++| +.+.|+. +|+.|||.++|++...
T Consensus 8 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t 44 (199)
T 2o7t_A 8 KRREHIITTTCNLYRTHHHDSLTMENIAEQAGVGVAT 44 (199)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHCCCccCCHHHHHHHhCCCHHH
Confidence 345555554 5567875 6999999999988654
No 353
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=38.24 E-value=36 Score=29.81 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=41.0
Q ss_pred chhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEE
Q 023862 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLY 139 (276)
Q Consensus 81 ~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlY 139 (276)
++.+..|+-++ ..+..|+.++|...|++..+++..|..|+... -++-..+|-|.-
T Consensus 164 ~~~~~~l~~~l--~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~--~v~~~~~~~~~~ 218 (232)
T 2qlz_A 164 MTQLAILHYLL--LNGRATVEELSDRLNLKEREVREKISEMARFV--PVKIINDNTVVL 218 (232)
T ss_dssp TTHHHHHHHHH--HSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTS--CEEEETTTEEEE
T ss_pred ccHHHHHHHHH--hcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcC--CeEEecCCeEEe
Confidence 44455555553 45899999999999999999999999998764 444555665553
No 354
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=38.23 E-value=12 Score=29.94 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=23.4
Q ss_pred hhhHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023862 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
..+.+|++| +.+.|+ .+|+.|||.++|++...
T Consensus 30 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t 66 (226)
T 2pz9_A 30 STRQRIVAAAKEEFARHGIAGARVDRIAKQARTSKER 66 (226)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCcHHHHHHHHCCChHH
Confidence 445666555 455687 59999999999987644
No 355
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=38.22 E-value=41 Score=29.86 Aligned_cols=66 Identities=17% Similarity=0.247 Sum_probs=45.1
Q ss_pred cCCCCchhhHHHHHHHHHcC-C--ceehhhhhhhcCC------CHHHHHHHHHHHHhhcCCceEee----cCc--cEEEE
Q 023862 76 SDKLPADVRNRAMDAVDACN-R--RVTIGDVAGKAGL------KLNEAQKALQALAADTDGFLEVS----DEG--DVLYV 140 (276)
Q Consensus 76 ~~~l~~~~~~rim~Ave~lg-~--rvTvgDVAa~aGL------~l~~Ae~aL~aLAsD~~GhLeVS----esG--DIlYv 140 (276)
+--|-..++-.|.+++.+.| . ..|+.|+|+++|+ ...-.++=|+.|++ -|-|+.. ++| +-.|.
T Consensus 38 ~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~--~gll~~~~~~~~~g~~~~~y~ 115 (372)
T 1fp1_D 38 PAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLAS--YSVLTSTTRTIEDGGAERVYG 115 (372)
T ss_dssp HHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHH--TTSEEEEEEECTTSCEEEEEE
T ss_pred HHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhh--CCceEecccccCCCCcCCeEe
Confidence 33344455666777887654 1 2999999999999 56677777888876 5667655 445 55777
Q ss_pred cCc
Q 023862 141 FPN 143 (276)
Q Consensus 141 FP~ 143 (276)
-..
T Consensus 116 ~t~ 118 (372)
T 1fp1_D 116 LSM 118 (372)
T ss_dssp ECT
T ss_pred cCH
Confidence 544
No 356
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=38.11 E-value=96 Score=25.46 Aligned_cols=69 Identities=17% Similarity=0.279 Sum_probs=45.5
Q ss_pred cCCCCchhhHHHHHHHHH----cCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcCcchHH
Q 023862 76 SDKLPADVRNRAMDAVDA----CNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRA 147 (276)
Q Consensus 76 ~~~l~~~~~~rim~Ave~----lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP~nfRs 147 (276)
..++...+-..|.+.+.. -|.+++..++|.+-|+|..-+++||..|.++ |-+++.. |.=.||-+-+-..
T Consensus 10 ~~~l~~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~e--Glv~~~~-~~G~~V~~~~~~~ 82 (218)
T 3sxy_A 10 VDLVRTKVYNLLKEMILNHELKLGEKLNVRELSEKLGISFTPVRDALLQLATE--GLVKVVP-RVGFFVTDVDEKF 82 (218)
T ss_dssp ----CHHHHHHHHHHHHTTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHH--TSEEEET-TTEEEECCCCHHH
T ss_pred cccHHHHHHHHHHHHHHhCCCCCCCEeCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEEeC-CCceEEcCCCHHH
Confidence 344555555555555544 5778999999999999999999999999987 5555543 3335555444333
No 357
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=37.94 E-value=46 Score=24.34 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=28.9
Q ss_pred HHHHHHHHHcC--CceehhhhhhhcCCCHHHHHHHHHHH
Q 023862 85 NRAMDAVDACN--RRVTIGDVAGKAGLKLNEAQKALQAL 121 (276)
Q Consensus 85 ~rim~Ave~lg--~rvTvgDVAa~aGL~l~~Ae~aL~aL 121 (276)
.++++.+++.- ...|+.|+|...|++...-++.+...
T Consensus 6 ~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 6 REACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp HHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 45677777653 68999999999999998877666544
No 358
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=37.45 E-value=9.7 Score=28.13 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.7
Q ss_pred CCceehhhhhhhcCCCHHHHHHHHHHH
Q 023862 95 NRRVTIGDVAGKAGLKLNEAQKALQAL 121 (276)
Q Consensus 95 g~rvTvgDVAa~aGL~l~~Ae~aL~aL 121 (276)
|+..|+.++|...|+++++..++|.++
T Consensus 47 g~~~TL~~aa~~~gid~d~l~~~L~~~ 73 (81)
T 2fi0_A 47 GRKVSLKQGSKLAGTPMDKIVRTLEAN 73 (81)
T ss_dssp HHHCBHHHHHHHHTCCHHHHHHHHHHT
T ss_pred cccCcHHHHHHHcCCCHHHHHHHHHHc
Confidence 367999999999999999998888774
No 359
>2g7h_A Methylated-DNA--protein-cysteine methyltransferase; protein structure, DNA repair, DNA methyltransferase; NMR {Methanocaldococcus jannaschii}
Probab=37.44 E-value=23 Score=30.33 Aligned_cols=73 Identities=22% Similarity=0.263 Sum_probs=49.8
Q ss_pred chhhHHHHHHHHHc--CCceehhhhhhhcCCCHHHHHHHHHH--HHhhcCCceEeecCccEEEEcCcchHHHhhhhhHHH
Q 023862 81 ADVRNRAMDAVDAC--NRRVTIGDVAGKAGLKLNEAQKALQA--LAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRL 156 (276)
Q Consensus 81 ~~~~~rim~Ave~l--g~rvTvgDVAa~aGL~l~~Ae~aL~a--LAsD~~GhLeVSesGDIlYvFP~nfRs~L~~Ks~r~ 156 (276)
.+.+.++.+++.+. |.-+|-||||...|.+...+-.+|.. ++-...||==|..+| + --|..+ +..|.+.+
T Consensus 78 t~Fq~~Vw~~l~~IP~G~t~TYg~iA~~~G~p~RaVG~Al~~Np~~i~iPCHRVv~~~G-l-~gy~gG----~~~K~~LL 151 (167)
T 2g7h_A 78 PEFTKKVLDIVKDIEFGKTLTYGDIAKKLNTSPRAVGMALKRNPLPLIIPCHRVVAKNS-L-GGYSYG----LDKKKFIL 151 (167)
T ss_dssp SSCCHHHHHHHTTCCTTCCEEHHHHHHHHTSCHHHHHHHHHTCSCTTTSGGGGEECSSS-C-CCSSSC----SHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCEeeHHHHHHHhCCCHHHHHHHHHhCCCCCccCceeEECCCC-C-CCCCcc----HHHHHHHH
Confidence 66889999999998 56688999999999994333333332 123458999999999 4 344332 34455555
Q ss_pred hHH
Q 023862 157 KVE 159 (276)
Q Consensus 157 rl~ 159 (276)
.+|
T Consensus 152 ~~E 154 (167)
T 2g7h_A 152 ERE 154 (167)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 360
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=37.44 E-value=14 Score=31.63 Aligned_cols=60 Identities=10% Similarity=0.195 Sum_probs=41.5
Q ss_pred hhhHHHHHHHHH----cCCce-ehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcCcc
Q 023862 82 DVRNRAMDAVDA----CNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNN 144 (276)
Q Consensus 82 ~~~~rim~Ave~----lg~rv-TvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP~n 144 (276)
.+...|.+.+.. -|.++ |..++|.+-|+|...+++||..|.++ |-|+. ..|-=.|+=+..
T Consensus 9 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~--g~i~~-~~g~G~~V~~~~ 73 (239)
T 3bwg_A 9 QIATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQK--GAIFQ-VRGSGIFVRKHK 73 (239)
T ss_dssp HHHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEE-ETTTEEEECCCC
T ss_pred HHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC--CcEEE-eCCceEEEecCc
Confidence 344555555554 35566 89999999999999999999999987 44543 334444554433
No 361
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=37.35 E-value=21 Score=28.05 Aligned_cols=34 Identities=21% Similarity=0.195 Sum_probs=25.4
Q ss_pred CchhhHHHHHHH----HHcCC-ceehhhhhhhcCCCHHH
Q 023862 80 PADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 80 ~~~~~~rim~Av----e~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
+...+.+|++|. .+.|| .+|+.|||.++|++...
T Consensus 12 ~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~t 50 (199)
T 3crj_A 12 FSDQTEEIMQATYRALREHGYADLTIQRIADEYGKSTAA 50 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHTSCHHH
T ss_pred chhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChhH
Confidence 455677777665 45585 69999999999987643
No 362
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=37.27 E-value=50 Score=27.60 Aligned_cols=70 Identities=11% Similarity=0.091 Sum_probs=50.6
Q ss_pred CchhhHHHHHHHHHcCC-ceehhhhhhhcC-CCHHHHHHHHHHHHhhcCCceEeec-------Ccc--EEEEcCcchHHH
Q 023862 80 PADVRNRAMDAVDACNR-RVTIGDVAGKAG-LKLNEAQKALQALAADTDGFLEVSD-------EGD--VLYVFPNNYRAK 148 (276)
Q Consensus 80 ~~~~~~rim~Ave~lg~-rvTvgDVAa~aG-L~l~~Ae~aL~aLAsD~~GhLeVSe-------sGD--IlYvFP~nfRs~ 148 (276)
....|.+|++.+..... -+|+.|++..-+ |+...+.+-|..|.... -++.-+ .|- -.|.-...=|..
T Consensus 27 ~~~tR~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaG--LV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~ 104 (151)
T 3u1d_A 27 LHETRLDVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDRG--IVEKIPVPRAKSVDDPPTTFYAVTGEGIAL 104 (151)
T ss_dssp CCHHHHHHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTT--SEEEEECCCCTTSSSCCCEEEEECHHHHHH
T ss_pred cchHHHHHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCC--CeEEeecCcCcccCCCCceEEEECHHHHHH
Confidence 34578899999988765 489999999999 99999999999999864 344321 122 256665555565
Q ss_pred hhh
Q 023862 149 LAA 151 (276)
Q Consensus 149 L~~ 151 (276)
|..
T Consensus 105 l~~ 107 (151)
T 3u1d_A 105 LRA 107 (151)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 363
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=37.20 E-value=54 Score=24.22 Aligned_cols=53 Identities=6% Similarity=0.060 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcC----CCHHHHHHHHHHHHhhcCCceEeecCccE
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAG----LKLNEAQKALQALAADTDGFLEVSDEGDV 137 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aG----L~l~~Ae~aL~aLAsD~~GhLeVSesGDI 137 (276)
..+..||.++-+.| .+|+.|+|...+ ++...+-.-|..|..+ |-++...+|.-
T Consensus 10 ~~q~~vL~~L~~~~-~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~k--Glv~R~~~~r~ 66 (126)
T 1sd4_A 10 MAEWDVMNIIWDKK-SVSANEIVVEIQKYKEVSDKTIRTLITRLYKK--EIIKRYKSENI 66 (126)
T ss_dssp HHHHHHHHHHHHSS-SEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHT--TSEEEEEETTE
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHhhcCCCChhhHHHHHHHHHHC--CceEEEeCCCe
Confidence 45678999999876 699999999997 5788888888888775 66766666653
No 364
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=37.16 E-value=39 Score=30.51 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=34.2
Q ss_pred hHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023862 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (276)
Q Consensus 84 ~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD 124 (276)
+.+|++.+.+. +.+|..|+|.++||+...+.+-+..|-++
T Consensus 18 ~~~il~~l~~~-~~~sr~~la~~~~ls~~tv~~~v~~L~~~ 57 (406)
T 1z6r_A 18 AGAVYRLIDQL-GPVSRIDLSRLAQLAPASITKIVHEMLEA 57 (406)
T ss_dssp HHHHHHHHHSS-CSCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 35688888765 57999999999999999999999888764
No 365
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=37.06 E-value=7.2 Score=33.44 Aligned_cols=67 Identities=16% Similarity=0.133 Sum_probs=17.1
Q ss_pred ceehhhhhhhcCCCHHHHHHHHHH--------------HHhhcC-------CceEeecCccEEEEcCcchHHHhhhhhHH
Q 023862 97 RVTIGDVAGKAGLKLNEAQKALQA--------------LAADTD-------GFLEVSDEGDVLYVFPNNYRAKLAAKSFR 155 (276)
Q Consensus 97 rvTvgDVAa~aGL~l~~Ae~aL~a--------------LAsD~~-------GhLeVSesGDIlYvFP~nfRs~L~~Ks~r 155 (276)
.+|+.|||..+|+|...+-++|+. .|.+.| -.|.-..++.|-++.|.. .+.+.+|.
T Consensus 3 ~~ti~diA~~agVS~~TVSrvln~~~~vs~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~---~~~~~~~~ 79 (338)
T 3dbi_A 3 LTTMLEVAKRAGVSKATVSRVLSGNGYVSQETKDRVFQAVEESGYRPNLLARNLSAKSTQTLGLVVTNT---LYHGIYFS 79 (338)
T ss_dssp ---------------------------------------------------------CCSEEEEEECTT---TTSTTHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCcCHHHHHhhhCCCCEEEEEecCC---cccChhHH
Confidence 589999999999999988777753 222221 235555677888888762 13445554
Q ss_pred HhHHHHHHHHh
Q 023862 156 LKVEPVIDKAK 166 (276)
Q Consensus 156 ~rl~~~~~k~w 166 (276)
.-++.+-+.+.
T Consensus 80 ~~~~gi~~~a~ 90 (338)
T 3dbi_A 80 ELLFHAARMAE 90 (338)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444443333
No 366
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=36.97 E-value=29 Score=26.75 Aligned_cols=50 Identities=14% Similarity=0.144 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecC
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE 134 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSes 134 (276)
+.+.+|++++++ ...++.|+|...|++.+++++-|. .+.+.|--.++.++
T Consensus 7 ~l~~~i~~~~~~--~p~~~~~la~~~~~~~~~~~~~l~-~l~~~G~l~~i~~~ 56 (121)
T 2pjp_A 7 AIWQKAEPLFGD--EPWWVRDLAKETGTDEQAMRLTLR-QAAQQGIITAIVKD 56 (121)
T ss_dssp HHHHHHGGGCSS--SCEEHHHHHHHTTCCHHHHHHHHH-HHHHTTSEEEEETT
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHhCCCHHHHHHHHH-HHHHCCCEEEecCC
Confidence 455667777754 346899999999999999965554 45555656666654
No 367
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=36.50 E-value=19 Score=28.58 Aligned_cols=32 Identities=28% Similarity=0.245 Sum_probs=24.2
Q ss_pred chhhHHHHHHH----HHcCC-ceehhhhhhhcCCCHH
Q 023862 81 ADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLN 112 (276)
Q Consensus 81 ~~~~~rim~Av----e~lg~-rvTvgDVAa~aGL~l~ 112 (276)
.+.|.+|++|. .+.|| .+|+.|||.++|++.-
T Consensus 8 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~g 44 (209)
T 2gfn_A 8 DERRRALADAVLALIAREGISAVTTRAVAEESGWSTG 44 (209)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHSSCHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCcc
Confidence 35567776654 56787 5899999999998764
No 368
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=36.30 E-value=93 Score=25.63 Aligned_cols=56 Identities=13% Similarity=0.306 Sum_probs=41.6
Q ss_pred hHHHHHHHHHcCCceehhhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEee-cCccEEEEcCcc
Q 023862 84 RNRAMDAVDACNRRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVS-DEGDVLYVFPNN 144 (276)
Q Consensus 84 ~~rim~Ave~lg~rvTvgDVAa~a-----GL~l~~Ae~aL~aLAsD~~GhLeVS-esGDIlYvFP~n 144 (276)
|...+..+-+.....|+.|++..- .++-....+.|..| |-.+|. ++|.-.|..|.+
T Consensus 6 R~~~I~~li~~~~~~tq~eL~~~L~~~G~~VtqaTisRDL~eL-----~~vKv~~~~g~~~Y~lp~~ 67 (149)
T 1b4a_A 6 RHIKIREIIMSNDIETQDELVDRLREAGFNVTQATVSRDIKEM-----QLVKVPMANGRYKYSLPSD 67 (149)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHT-----TCEEEECSSSCEEEECTTC
T ss_pred HHHHHHHHHHHCCCccHHHHHHHHHHcCCCcCHHHHHHHHHHc-----CCeEEECCCCCEEEEeCCC
Confidence 333344444456678999999888 77888888888887 567776 479999999976
No 369
>2y9k_A Protein INVG; protein transport, type III secretion system, outer membrane secretin family, C15 fold; 8.30A {Salmonella enterica subsp}
Probab=36.26 E-value=28 Score=27.61 Aligned_cols=61 Identities=11% Similarity=0.204 Sum_probs=43.3
Q ss_pred chhhHHHHHHHHHcCCceehhhhhhhcC-----CCHHHHHHHHHHHHhhcCCceEeecCccEEEEcCcc
Q 023862 81 ADVRNRAMDAVDACNRRVTIGDVAGKAG-----LKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNN 144 (276)
Q Consensus 81 ~~~~~rim~Ave~lg~rvTvgDVAa~aG-----L~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP~n 144 (276)
++++.-+-...+..|..+.+.+-+ ..| ++..+.++.|..|++-+|=.. -.+|+++|+.|.+
T Consensus 7 ~~l~~vl~~la~~~~~~ivvs~~~-v~g~vsg~l~~~~~~~~l~~l~~~~gl~~--~~~G~vl~V~~~~ 72 (137)
T 2y9k_A 7 DSLRTFFDAMALQLKEPVIVSKMA-ARKKITGNFEFHDPNALLEKLSLQLGLIW--YFDGQAIYIYDAS 72 (137)
T ss_dssp EEHHHHHHHHHHHTTCCEEECHHH-HCSEEEEEECSCCHHHHHHHHHHHHTEEE--EECSSCEEEEEGG
T ss_pred CCHHHHHHHHHHhcCCCEEECchh-ccceEEEEEcCCCHHHHHHHHHHHcCeEE--EEECCEEEEEech
Confidence 345555566667777777776521 223 666788899999999987554 4599999999974
No 370
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=35.78 E-value=68 Score=23.09 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=38.1
Q ss_pred ccCCCCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHh
Q 023862 75 ESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAA 123 (276)
Q Consensus 75 ~~~~l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAs 123 (276)
-..+++++.+.+|++.++ . ..++.+||...|++...+.+-+.....
T Consensus 14 m~~~~s~~~r~~i~~~~~-~--g~s~~~ia~~lgis~~Tv~~w~~~~~~ 59 (128)
T 1pdn_C 14 NGRPLPNNIRLKIVEMAA-D--GIRPCVISRQLRVSHGCVSKILNRYQE 59 (128)
T ss_dssp TTSCCCHHHHHHHHHHHH-T--TCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHH-c--CCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 355799999999998875 3 468999999999999999888887654
No 371
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=35.75 E-value=7.7 Score=33.20 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=0.0
Q ss_pred ceehhhhhhhcCCCHHHHHHHHHHH
Q 023862 97 RVTIGDVAGKAGLKLNEAQKALQAL 121 (276)
Q Consensus 97 rvTvgDVAa~aGL~l~~Ae~aL~aL 121 (276)
.+|+.|||.++|+|...+-++|+..
T Consensus 2 ~~ti~diA~~agVS~~TVSrvln~~ 26 (330)
T 3ctp_A 2 LANIREIAKRAGISIATVSRHLNNT 26 (330)
T ss_dssp -------------------------
T ss_pred CCCHHHHHHHHCCCHHHHHHHHcCC
Confidence 4799999999999999999888763
No 372
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.65 E-value=1.1e+02 Score=25.93 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=46.7
Q ss_pred CCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcCcchH
Q 023862 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYR 146 (276)
Q Consensus 79 l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP~nfR 146 (276)
+...++...+..+.+.-.++++.++|..-|++.+++|+.|..+..|..=+=..+..-.+|..+...-+
T Consensus 338 l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~~~~~E~~l~~lI~~~~i~a~id~~~g~v~~~~~~~~ 405 (434)
T 4b4t_Q 338 LYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGNGWLYVYETPNQ 405 (434)
T ss_dssp HHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSSCCEEETTTTEEECC-----
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcCHHHHHHHHHHHHhCCCcceecccccCeEeeCCCcch
Confidence 33445555566666667789999999999999999999999998886444344554456666654443
No 373
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=35.65 E-value=1.2e+02 Score=23.11 Aligned_cols=43 Identities=14% Similarity=0.035 Sum_probs=28.4
Q ss_pred CCCCchhhHHH-HHHHHHcCCceehhhhhhhcCCCHHHHHHHHH
Q 023862 77 DKLPADVRNRA-MDAVDACNRRVTIGDVAGKAGLKLNEAQKALQ 119 (276)
Q Consensus 77 ~~l~~~~~~ri-m~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~ 119 (276)
+.||..-+.-+ +......+...|..|||...|+|.+.+++-+.
T Consensus 18 ~~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~ 61 (99)
T 3t72_q 18 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 61 (99)
T ss_pred HcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 35766544433 22211123678999999999999999977654
No 374
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=35.59 E-value=21 Score=27.09 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=24.1
Q ss_pred chhhHHHHHHH----HHcCCceehhhhhhhcCCCHHH
Q 023862 81 ADVRNRAMDAV----DACNRRVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 81 ~~~~~rim~Av----e~lg~rvTvgDVAa~aGL~l~~ 113 (276)
.+.+.+|+++. .+. ..+|+.|||.++|++...
T Consensus 13 ~~~r~~Il~aA~~lf~~~-~~~t~~~Ia~~agvs~~t 48 (190)
T 2v57_A 13 ERTRRAILDAAMLVLADH-PTAALGDIAAAAGVGRST 48 (190)
T ss_dssp CHHHHHHHHHHHHHHTTC-TTCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHc-CCCCHHHHHHHhCCCHHH
Confidence 35566776654 445 889999999999988654
No 375
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=35.56 E-value=36 Score=23.26 Aligned_cols=32 Identities=16% Similarity=0.129 Sum_probs=23.4
Q ss_pred chhhHHHHHHHHHcCCceehhhhhhhcCCCHHHH
Q 023862 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEA 114 (276)
Q Consensus 81 ~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~A 114 (276)
|++-.++-++.+++| .|+.|+|.++|++....
T Consensus 1 m~~~~~lk~~r~~~g--lsq~~lA~~~gis~~~i 32 (77)
T 2k9q_A 1 MELSNELKVERIRLS--LTAKSVAEEMGISRQQL 32 (77)
T ss_dssp CCHHHHHHHHHHHHT--CCHHHHHHHHTSCHHHH
T ss_pred CcHHHHHHHHHHHcC--CCHHHHHHHhCCCHHHH
Confidence 344556666666654 69999999999987665
No 376
>3gva_A Alkyltransferase-like protein 1; alkylated DNA damage repair, DNA damage, DNA repair, DNA- binding, DNA binding protein; 2.00A {Schizosaccharomyces pombe} PDB: 3gx4_X* 3gyh_X* 4enj_A* 4enk_A* 4enm_A* 4enn_A* 4hdu_A* 4hdv_A*
Probab=35.47 E-value=27 Score=28.09 Aligned_cols=57 Identities=18% Similarity=0.286 Sum_probs=44.2
Q ss_pred hhhHHHHHHHHHc--CCceehhhhhhhcCCC--HHHHHHHHHHH--HhhcCCceEeecCccEE
Q 023862 82 DVRNRAMDAVDAC--NRRVTIGDVAGKAGLK--LNEAQKALQAL--AADTDGFLEVSDEGDVL 138 (276)
Q Consensus 82 ~~~~rim~Ave~l--g~rvTvgDVAa~aGL~--l~~Ae~aL~aL--AsD~~GhLeVSesGDIl 138 (276)
+.+.++.+++.+. |.-+|-||||...|.+ ...+-.+|... +-...||==|..+|.|-
T Consensus 5 ~Fq~~Vw~~l~~IP~G~v~TYg~IA~~~G~p~aaRaVG~Al~~Np~~i~IPCHRVV~s~G~l~ 67 (116)
T 3gva_A 5 EFYTKVYDAVCEIPYGKVSTYGEIARYVGMPSYARQVGQAMKHLHPETHVPWHRVINSRGTIS 67 (116)
T ss_dssp HHHHHHHHHHTTSCTTCBBCHHHHHHHTTCTTCHHHHHHHHHTSCTTCSSCGGGBCCTTSBCC
T ss_pred HHHHHHHHHHhcCCCCCeEeHHHHHHHhCCCCcHHHHHHHHHhCCCCcCCCceEEECCCCCCC
Confidence 4788999999998 6678889999999974 44554555443 34468999999999986
No 377
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.50A {Mycobacterium tuberculosis}
Probab=35.27 E-value=79 Score=28.01 Aligned_cols=59 Identities=20% Similarity=0.306 Sum_probs=49.6
Q ss_pred CchhhHHHHHHH-HHcCCceehhh---hhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcCc
Q 023862 80 PADVRNRAMDAV-DACNRRVTIGD---VAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (276)
Q Consensus 80 ~~~~~~rim~Av-e~lg~rvTvgD---VAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP~ 143 (276)
||..+.-|++.+ ...|+.+.+++ +.+.-|++-.-++.+|-.|+++ |-|+.++.| |....
T Consensus 2 ~~~arSlIlsll~g~~g~~i~~~~Li~l~~~~Gi~e~avRtAlsRL~~~--G~L~~~~~G---Y~LT~ 64 (247)
T 3kfw_X 2 SLTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGA--GDLVRSADG---YRLSD 64 (247)
T ss_dssp CCCHHHHHHHHHTTTTTSCBCHHHHHHHHTTTTCCHHHHHHHHHHHHHT--TSEEEETTE---EEECH
T ss_pred CCCCceeeEeeecCCCCCcccHHHHHHHHHHcCCChHHHHHHHHHHHHc--CCeeccCCc---eeeCH
Confidence 677888899975 77799999995 5667789999999999999875 789999999 87755
No 378
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.18 E-value=1.3e+02 Score=27.76 Aligned_cols=69 Identities=6% Similarity=0.110 Sum_probs=54.6
Q ss_pred CCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcCcchHH
Q 023862 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRA 147 (276)
Q Consensus 79 l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP~nfRs 147 (276)
|-..+|.+.+..+-+-=-+||+..+|..-|++.+++|+.|..|-.+..=+=....-.-+|+..-.+-|.
T Consensus 329 l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~d~~~ 397 (429)
T 4b4t_R 329 FVREMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDNKN 397 (429)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECC-----
T ss_pred HHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCCCchh
Confidence 445567777777777778999999999999999999999999999997777888877788888655543
No 379
>2ev1_A Hypothetical protein RV1264/MT1302; alpha-helical, regulatory domain of adenylyl cyclase, oleic lyase; HET: OLA 1PE; 1.60A {Mycobacterium tuberculosis} PDB: 2ev2_A* 2ev3_A* 2ev4_A*
Probab=35.04 E-value=26 Score=31.22 Aligned_cols=39 Identities=23% Similarity=0.380 Sum_probs=31.0
Q ss_pred eehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEc
Q 023862 98 VTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (276)
Q Consensus 98 vTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvF 141 (276)
||..|||..+|++++.+++-=++| |.-.+++.++.+|.=
T Consensus 79 vT~~eVAe~aGv~~e~~rr~wRal-----Gfp~~~d~d~r~fte 117 (222)
T 2ev1_A 79 VSAREISENYGVDLELLQRVQRAV-----GLARVDDPDAVVHMR 117 (222)
T ss_dssp ECHHHHHHHHTCCHHHHHHHHHHH-----CCCCCCCTTCCCEEH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHh-----CCCCCCCCCCccCCH
Confidence 599999999999999997766666 555565667788764
No 380
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=34.89 E-value=50 Score=25.93 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=33.9
Q ss_pred HHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023862 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (276)
Q Consensus 86 rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD 124 (276)
..+..++-...+.|+.|||.+-||+.++....|..++..
T Consensus 21 t~~~t~~l~~~G~sleeIA~~R~L~~~TI~~Hl~~~v~~ 59 (122)
T 3iuo_A 21 MKVSIVQQIDRKVALDDIAVSHGLDFPELLSEVETIVYS 59 (122)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 446677777789999999999999999999999999754
No 381
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=34.69 E-value=26 Score=30.02 Aligned_cols=58 Identities=14% Similarity=0.168 Sum_probs=40.7
Q ss_pred hhHHHHHHHHH----cCCce-ehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcCc
Q 023862 83 VRNRAMDAVDA----CNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (276)
Q Consensus 83 ~~~rim~Ave~----lg~rv-TvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP~ 143 (276)
+...|.+.+.. -|.++ |..++|.+-|+|...+++||..|.++. -|+ ...|-=.|+=+.
T Consensus 15 i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G--~i~-~~~g~G~~V~~~ 77 (243)
T 2wv0_A 15 IMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEG--LLY-RLKGRGTFVSKP 77 (243)
T ss_dssp HHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTT--SEE-ECTTSCEEECCC
T ss_pred HHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC--cEE-EeCCCeEEEeCC
Confidence 44455555554 35566 889999999999999999999999874 454 334444555443
No 382
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=34.35 E-value=46 Score=30.49 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD 124 (276)
-+.+|++.+.+.+ .+|..|+|.++||+...+.+-+..|.++
T Consensus 40 n~~~il~~l~~~~-~~sr~ela~~~gls~~tv~~~v~~L~~~ 80 (429)
T 1z05_A 40 NAGRVYKLIDQKG-PISRIDLSKESELAPASITKITRELIDA 80 (429)
T ss_dssp HHHHHHHHHHHHC-SBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 3456899998864 7999999999999999999999988775
No 383
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=34.21 E-value=62 Score=27.68 Aligned_cols=57 Identities=14% Similarity=0.049 Sum_probs=40.2
Q ss_pred CCCCchhhHHHHHHHHHcCCceehhhhhhhcC--------------CCHHHHHHHHHHHHhhcCCceEeec
Q 023862 77 DKLPADVRNRAMDAVDACNRRVTIGDVAGKAG--------------LKLNEAQKALQALAADTDGFLEVSD 133 (276)
Q Consensus 77 ~~l~~~~~~rim~Ave~lg~rvTvgDVAa~aG--------------L~l~~Ae~aL~aLAsD~~GhLeVSe 133 (276)
.++..+.+++|+++++++||+....--+.+++ ---.+.-+++..-|.+.|-++.+..
T Consensus 35 ~~vs~~tr~rV~~~~~~lgY~pn~~a~~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~ 105 (344)
T 3kjx_A 35 GDVSDATRARVLAAAKELGYVPNKIAGALASNRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGV 105 (344)
T ss_dssp SCCCHHHHHHHHHHHHHHTCCCCCCCSCSTTSCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCHHHHHhhcCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 46899999999999999999864322111111 1235666888888888888886644
No 384
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=33.77 E-value=29 Score=29.28 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=24.7
Q ss_pred chhhHHHHHHH----HHcCCc-eehhhhhhhcCCCHHH
Q 023862 81 ADVRNRAMDAV----DACNRR-VTIGDVAGKAGLKLNE 113 (276)
Q Consensus 81 ~~~~~rim~Av----e~lg~r-vTvgDVAa~aGL~l~~ 113 (276)
...+.+|++|. .+.|+. +|+.|||.++|++...
T Consensus 40 ~~tr~~Il~AA~~lf~e~G~~~~S~~~IA~~AGVs~~t 77 (273)
T 3c07_A 40 EQTRALILETAMRLFQERGYDRTTMRAIAQEAGVSVGN 77 (273)
T ss_dssp HHHHHHHHHHHHHHHHHTCSTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCCccccCHHHHHHHHCCCHHH
Confidence 35566776654 456875 8999999999988654
No 385
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=33.74 E-value=69 Score=22.50 Aligned_cols=38 Identities=18% Similarity=0.146 Sum_probs=29.6
Q ss_pred ccCCCCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHH
Q 023862 75 ESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEA 114 (276)
Q Consensus 75 ~~~~l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~A 114 (276)
..+.+.|.+-.+|-+.-++. ..|+.|+|.+.|++....
T Consensus 6 ~~~~~~~~~~~~l~~~r~~~--glsq~~lA~~~gis~~~i 43 (91)
T 1x57_A 6 SGDRVTLEVGKVIQQGRQSK--GLTQKDLATKINEKPQVI 43 (91)
T ss_dssp CSSCCCCHHHHHHHHHHHTT--TCCHHHHHHHHTSCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHCcCHHHH
Confidence 34667788888887776665 479999999999987655
No 386
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=33.73 E-value=59 Score=21.71 Aligned_cols=47 Identities=9% Similarity=0.068 Sum_probs=33.4
Q ss_pred CCCCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCC
Q 023862 77 DKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDG 127 (276)
Q Consensus 77 ~~l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~G 127 (276)
+.|+..-+ +|+..+ ....|..|||...|++...++.-+..+-...+.
T Consensus 10 ~~L~~~e~-~il~~~---~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 10 PLLTKRER-EVFELL---VQDKTTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCHHHH-HHHHHH---TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHH-HHHHHH---HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 44555333 444443 344599999999999999999988887766543
No 387
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=33.61 E-value=59 Score=26.71 Aligned_cols=44 Identities=9% Similarity=0.146 Sum_probs=32.6
Q ss_pred HHHHHHHc--CCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 87 AMDAVDAC--NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 87 im~Ave~l--g~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
+|-.+-.. +..+|+.|+|.+.|+|...+++-|..|... |-++..
T Consensus 32 ~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~a--Glv~s~ 77 (159)
T 3lwf_A 32 ITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNA--GIVKSI 77 (159)
T ss_dssp HHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CeEEEe
Confidence 34444433 456999999999999999999999999764 334443
No 388
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=33.07 E-value=15 Score=29.64 Aligned_cols=39 Identities=8% Similarity=0.098 Sum_probs=32.8
Q ss_pred HHHHHHHHHcCC-ceehhhhhhhcCCCHHHHHHHHHHHHh
Q 023862 85 NRAMDAVDACNR-RVTIGDVAGKAGLKLNEAQKALQALAA 123 (276)
Q Consensus 85 ~rim~Ave~lg~-rvTvgDVAa~aGL~l~~Ae~aL~aLAs 123 (276)
..|++.++..|| +.++.|+|...|++.+++++.|..+.+
T Consensus 26 ~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~vL~~iQ~ 65 (130)
T 2k9m_A 26 LELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKVLR 65 (130)
T ss_dssp HHHTTSBCTTSSBSSCHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 445667777887 688999999999999999999988875
No 389
>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} SCOP: a.4.5.76
Probab=32.89 E-value=64 Score=25.00 Aligned_cols=65 Identities=25% Similarity=0.328 Sum_probs=50.7
Q ss_pred hhhHHHHHHHHHcCCceeh--hhhhhhcCC-----CHHHHHHHHHHHHhhcCCceEeecCccEEEEcCcchHHHhh
Q 023862 82 DVRNRAMDAVDACNRRVTI--GDVAGKAGL-----KLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLA 150 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTv--gDVAa~aGL-----~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP~nfRs~L~ 150 (276)
.+...|++.+.+.+..-|+ .|||-.-|- -...++.+-..||. .|.++++-.|.+| =|.+||..+|
T Consensus 7 ~le~~Il~ll~~R~~~kTicPSEvARal~~~~Wr~lM~~vR~~A~~La~--~G~v~I~qkG~pV--dp~~~rGpiR 78 (85)
T 2ns0_A 7 ELEECIRALLDARADSASICPSDVARAVAPDDWRPLMEPVREAAGRLAD--AGEVEVTQKGAVV--DPRSARGPIR 78 (85)
T ss_dssp HHHHHHHHHHHHSCTTCCBCHHHHHHHHCTTSCGGGHHHHHHHHHHHHH--TTSEEEEETTEEC--CTTTCCSCCE
T ss_pred HHHHHHHHHHHHhCCCCCcCHHHHHHHhCchhHHHHhHHHHHHHHHHHH--CCcEEEEECCEEc--CcccCCCCEE
Confidence 5678899999999887776 899988873 25677777777776 5899999999997 3777776543
No 390
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=32.50 E-value=68 Score=25.54 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=39.6
Q ss_pred chhhHHHHHHHHHcC--------------CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeec
Q 023862 81 ADVRNRAMDAVDACN--------------RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (276)
Q Consensus 81 ~~~~~rim~Ave~lg--------------~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSe 133 (276)
.+...|+...+..+. ..+|..|+|...|++.+.+-+.|..|..+ |-+++..
T Consensus 133 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~L~~~--g~I~~~~ 197 (222)
T 1ft9_A 133 HDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLIKE--GYISRQG 197 (222)
T ss_dssp HHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHHHT--TSSEECS
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHC--CcEEEcC
Confidence 456677777777654 23799999999999999999999999765 5566643
No 391
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=32.36 E-value=22 Score=28.24 Aligned_cols=44 Identities=5% Similarity=-0.028 Sum_probs=38.4
Q ss_pred hhhHHHHHHHHHcCC--ceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023862 82 DVRNRAMDAVDACNR--RVTIGDVAGKAGLKLNEAQKALQALAADT 125 (276)
Q Consensus 82 ~~~~rim~Ave~lg~--rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~ 125 (276)
..+-.|+.++...+. .+|+.|+|...|++...+-+.|..|..+.
T Consensus 69 ~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~G 114 (181)
T 2fbk_A 69 AAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKG 114 (181)
T ss_dssp HHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCc
Confidence 356788999988875 59999999999999999999999998874
No 392
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=32.34 E-value=29 Score=30.45 Aligned_cols=44 Identities=16% Similarity=0.153 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHHc----CCce-ehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023862 82 DVRNRAMDAVDAC----NRRV-TIGDVAGKAGLKLNEAQKALQALAADT 125 (276)
Q Consensus 82 ~~~~rim~Ave~l----g~rv-TvgDVAa~aGL~l~~Ae~aL~aLAsD~ 125 (276)
.+...|.+.+... |.++ |..++|.+-|+|...+++||..|.++.
T Consensus 33 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G 81 (272)
T 3eet_A 33 RVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEG 81 (272)
T ss_dssp HHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 3445555555543 5566 899999999999999999999999874
No 393
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=31.98 E-value=46 Score=27.54 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=41.5
Q ss_pred chhhHHHHHHHHH----cCCce-ehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcC
Q 023862 81 ADVRNRAMDAVDA----CNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (276)
Q Consensus 81 ~~~~~rim~Ave~----lg~rv-TvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP 142 (276)
..+-..|.+.+.. -|.+. |-.++|.+-|+|-..+++||..|.++ |-|++.. |.=.||=+
T Consensus 10 ~~v~~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~e--Glv~~~~-g~G~~V~~ 73 (239)
T 1hw1_A 10 GFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARD--GWLTIQH-GKPTKVNN 73 (239)
T ss_dssp HHHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEET-TEEEEECC
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC--CcEEEec-CCCcEeeC
Confidence 3444555555554 35666 88999999999999999999999987 5565543 33355543
No 394
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=31.61 E-value=27 Score=29.79 Aligned_cols=57 Identities=16% Similarity=0.161 Sum_probs=17.4
Q ss_pred CCCCchhhHHHHHHHHHcCCceehhhhhhhcC-------------C---CHHHHHHHHHHHHhhcCCceEeec
Q 023862 77 DKLPADVRNRAMDAVDACNRRVTIGDVAGKAG-------------L---KLNEAQKALQALAADTDGFLEVSD 133 (276)
Q Consensus 77 ~~l~~~~~~rim~Ave~lg~rvTvgDVAa~aG-------------L---~l~~Ae~aL~aLAsD~~GhLeVSe 133 (276)
.++..+.|++|+++++++||+....--+.+++ + --.+.-+++..-|.+.|-+|.+..
T Consensus 28 ~~vs~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~ 100 (338)
T 3dbi_A 28 GYVSQETKDRVFQAVEESGYRPNLLARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD 100 (338)
T ss_dssp --------------------------------CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCcCHHHHHhhhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEe
Confidence 46888999999999999999764321111111 1 125667888888888888877654
No 395
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=31.46 E-value=27 Score=29.84 Aligned_cols=59 Identities=15% Similarity=0.232 Sum_probs=40.8
Q ss_pred chhhHHHHHHHHH----cCCce-ehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcC
Q 023862 81 ADVRNRAMDAVDA----CNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (276)
Q Consensus 81 ~~~~~rim~Ave~----lg~rv-TvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP 142 (276)
..+...|.+.+.. -|.++ |..++|.+-|+|...+++||..|.++ |-|+.. .|-=.|+=+
T Consensus 12 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~--G~i~~~-~g~G~~V~~ 75 (236)
T 3edp_A 12 EVIASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEE--GLVVRK-NGVGLYVQP 75 (236)
T ss_dssp HHHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEEE-TTTEEEECC
T ss_pred HHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEE-CCceEEEcc
Confidence 4455666666664 35566 89999999999999999999999987 445443 333345543
No 396
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=31.37 E-value=64 Score=25.23 Aligned_cols=48 Identities=25% Similarity=0.350 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHH---cC----CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023862 82 DVRNRAMDAVDA---CN----RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (276)
Q Consensus 82 ~~~~rim~Ave~---lg----~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeV 131 (276)
+...|+...+.. .+ ..+|..|+|...|++...+-+.|..|..+ |-+++
T Consensus 141 ~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~--g~I~~ 195 (216)
T 4ev0_A 141 EARNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRETVSRVLHALAEE--GVVRL 195 (216)
T ss_dssp HHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEE
T ss_pred CHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCCCHHHHHHHHHHHHHC--CCEEe
Confidence 455666666643 22 46799999999999999999999999875 45554
No 397
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=31.27 E-value=1.4e+02 Score=27.68 Aligned_cols=74 Identities=15% Similarity=0.187 Sum_probs=53.1
Q ss_pred cCCCCchhhHHHHHHHHHc--CCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCcc-EEEEcCcchHHHhhhh
Q 023862 76 SDKLPADVRNRAMDAVDAC--NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGD-VLYVFPNNYRAKLAAK 152 (276)
Q Consensus 76 ~~~l~~~~~~rim~Ave~l--g~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGD-IlYvFP~nfRs~L~~K 152 (276)
.+.||.+.+. ++..+--. |..++...++...|.+.++++..|..|.+. +-+++..+|+ -.|.+..-+|..++.+
T Consensus 372 ~~~L~~~~~~-~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~--~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 372 VEMLREDIKD-YYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNK--SLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HHTSCTTTHH-HHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred HHhCCHHHHH-HHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhC--cCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 4566665433 33333323 567888888888899999999999999876 5667776665 4799988888888776
No 398
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=31.19 E-value=63 Score=24.36 Aligned_cols=57 Identities=12% Similarity=0.223 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhc-CCCHHHHHHHHHHHHhhcCCceEeecCccEEEEc
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKA-GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~a-GL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvF 141 (276)
-+..|+..+.....++|++|++... |++-...-+.|..|..+ |-++-...-.+.|.-
T Consensus 28 wrl~IL~~L~~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~--GlV~r~~~r~~~y~L 85 (111)
T 3df8_A 28 YTMLIISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDS--GLVERRSGQITTYAL 85 (111)
T ss_dssp THHHHHHHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHT--TSEEEEESSSEEEEE
T ss_pred cHHHHHHHHhcCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHC--CCEEEeecCcEEEEE
Confidence 3567888887433345699999999 99999999999999876 455544444555655
No 399
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=31.00 E-value=36 Score=29.60 Aligned_cols=48 Identities=27% Similarity=0.212 Sum_probs=35.9
Q ss_pred HcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcCcch
Q 023862 93 ACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNY 145 (276)
Q Consensus 93 ~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP~nf 145 (276)
.+....|+.|+|.++|++..-.++=|+.|++ .|.|+-.+ + .|.-+.--
T Consensus 52 ~l~~~~t~~elA~~~~~~~~~l~rlLr~L~~--~gll~~~~--~-~y~~t~~s 99 (352)
T 3mcz_A 52 LTQTGRTPAEVAASFGMVEGKAAILLHALAA--LGLLTKEG--D-AFRNTALT 99 (352)
T ss_dssp HTTSCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEET--T-EEEECHHH
T ss_pred HhCCCCCHHHHHHHhCcChHHHHHHHHHHHH--CCCeEecC--C-eeecCHHH
Confidence 3344899999999999999999999999987 46676544 2 36654433
No 400
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=30.95 E-value=59 Score=21.70 Aligned_cols=32 Identities=31% Similarity=0.347 Sum_probs=23.6
Q ss_pred chhhHHHHHHHHHcCCceehhhhhhhcCCCHHHH
Q 023862 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEA 114 (276)
Q Consensus 81 ~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~A 114 (276)
+.+..++-+..++.| .|+.|+|.++|++....
T Consensus 6 ~~~~~~l~~~r~~~g--~sq~~lA~~~gis~~~i 37 (78)
T 3b7h_A 6 EFVSEHLMELITQQN--LTINRVATLAGLNQSTV 37 (78)
T ss_dssp HHHHHHHHHHHHHTT--CCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHCcCHHHH
Confidence 345566666666654 79999999999997665
No 401
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=30.94 E-value=61 Score=25.52 Aligned_cols=38 Identities=5% Similarity=0.070 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023862 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (276)
Q Consensus 86 rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD 124 (276)
++|-.+-+...+ |+.|+|.+.++|..-.++-|..|...
T Consensus 13 ~~L~~La~~~~~-s~~~IA~~~~i~~~~l~kIl~~L~~a 50 (145)
T 1xd7_A 13 HILSLISMDEKT-SSEIIADSVNTNPVVVRRMISLLKKA 50 (145)
T ss_dssp HHHHHHHTCSCC-CHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 344445544446 99999999999999999999999753
No 402
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=30.48 E-value=48 Score=28.53 Aligned_cols=46 Identities=20% Similarity=0.212 Sum_probs=35.1
Q ss_pred cCCce-ehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcCc
Q 023862 94 CNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (276)
Q Consensus 94 lg~rv-TvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP~ 143 (276)
-|.+. |..++|.+-|+|...+++||..|.++ |-|+. .|-=.||=+.
T Consensus 32 ~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~--G~i~~--~g~Gt~V~~~ 78 (248)
T 3f8m_A 32 IGDPFPAEREIAEQFEVARETVRQALRELLID--GRVER--RGRTTVVARP 78 (248)
T ss_dssp TTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEE--ETTEEEECCC
T ss_pred CCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEe--CCCEEEEccC
Confidence 45566 88999999999999999999999986 55655 3433455443
No 403
>1sfe_A ADA O6-methylguanine-DNA methyltransferase; enzyme, nucleic acid binding DNA repair protein, DNA-binding protein; 2.10A {Escherichia coli} SCOP: a.4.2.1 c.55.7.1
Probab=30.44 E-value=44 Score=28.55 Aligned_cols=74 Identities=20% Similarity=0.232 Sum_probs=51.0
Q ss_pred chhhHHHHHHHHHc--CCceehhhhhhhcCCC--HHHHHHHHHH--HHhhcCCceEeecCccEEEEcCcchHHHhhhhhH
Q 023862 81 ADVRNRAMDAVDAC--NRRVTIGDVAGKAGLK--LNEAQKALQA--LAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSF 154 (276)
Q Consensus 81 ~~~~~rim~Ave~l--g~rvTvgDVAa~aGL~--l~~Ae~aL~a--LAsD~~GhLeVSesGDIlYvFP~nfRs~L~~Ks~ 154 (276)
.+.+.++.+++.+. |.-+|-||||...|.+ ...+-.+|.. ++-...||==|..+|.|- +|+.=+..|.+
T Consensus 95 t~Fq~~V~~~l~~IP~G~~~tYg~iA~~~g~p~a~RaVg~A~~~np~~~~iPcHRVv~~~G~l~-----gy~~g~~~k~~ 169 (180)
T 1sfe_A 95 TAFQQQVWQALRTIPCGETVSYQQLANAIGKPKAVRAVASACAANKLAIVIPCHRVVRGDGSLS-----GYRWGVSRKAQ 169 (180)
T ss_dssp CHHHHHHHHHHTTSCTTCCEEHHHHHHHTTCTTCHHHHHHHHHTCCBBTTBCGGGEECTTSCCT-----TCTTCHHHHHH
T ss_pred ChHHHHHHHHHhcCCCCCeEeHHHHHHHhCCCchHHHHHHHHHhCCCCcccCcceEECCCCCcC-----CCCCCHHHHHH
Confidence 56789999999997 5567889999999975 3444444433 334568999999999985 33333344555
Q ss_pred HHhHH
Q 023862 155 RLKVE 159 (276)
Q Consensus 155 r~rl~ 159 (276)
.+.+|
T Consensus 170 LL~~E 174 (180)
T 1sfe_A 170 LLRRE 174 (180)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55544
No 404
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=30.29 E-value=58 Score=21.24 Aligned_cols=31 Identities=29% Similarity=0.278 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhcCCCHHHHH
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQ 115 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae 115 (276)
+-.++-+..++.| .|..|+|...|++.....
T Consensus 4 ~~~~l~~~r~~~g--lsq~~lA~~~gis~~~i~ 34 (71)
T 1zug_A 4 LSERLKKRRIALK--MTQTELATKAGVKQQSIQ 34 (71)
T ss_dssp HHHHHHHHHHHTT--CCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHcC--CCHHHHHHHhCCCHHHHH
Confidence 4456666666654 699999999999976653
No 405
>3qyf_A Crispr-associated protein; helix-turn-helix, antiviral protein, viral resistance, nucle binding domain; 1.90A {Sulfolobus solfataricus}
Probab=29.99 E-value=36 Score=31.97 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=50.1
Q ss_pred CcccccCCCCchhhHHHHHHHHHcC--CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcCcchHHH
Q 023862 71 GRIVESDKLPADVRNRAMDAVDACN--RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAK 148 (276)
Q Consensus 71 ~~~v~~~~l~~~~~~rim~Ave~lg--~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP~nfRs~ 148 (276)
+..|+-..||..+.+..+++++... +..++.++|.+-|+++.+- .+ -|-|++ .||=.|.+++=+|.-
T Consensus 197 ~~Li~LP~lPi~ld~~~~~~lk~~~~~g~~~~~~la~~lgi~v~~L----~~-----~gli~~--~~~~~~~~~~w~~~~ 265 (324)
T 3qyf_A 197 NDVVILPSPPITIRPKYLDWLIRFAISGYTLSEKRAEELGIPVRLL----EA-----KMLVER--KGEDAYRLKDWVRKL 265 (324)
T ss_dssp TEEEEECCCCEEECHHHHHHHHHHHHHCSEEEHHHHHHTTCCHHHH----HH-----TTSEEE--ETTTEEEECHHHHHH
T ss_pred CceEEcCCCCcccCHHHHHHHHHHHhcCCCCHHHHHHHhCCCHHHH----HH-----CCCeEe--cCCCceehHHHHHHH
Confidence 5778889999999999999999884 7899999999999997633 22 344554 444467776555543
No 406
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=29.94 E-value=64 Score=23.90 Aligned_cols=41 Identities=10% Similarity=0.153 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhc-CCCHHHHHHHHHHHHhhc
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKA-GLKLNEAQKALQALAADT 125 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~a-GL~l~~Ae~aL~aLAsD~ 125 (276)
.+-.|+.++. .+..|+.|+|... |++...+-+.|..|.++.
T Consensus 15 ~~~~IL~~L~--~~~~~~~eLa~~l~~is~~tls~~L~~Le~~G 56 (107)
T 2hzt_A 15 WKXVILXHLT--HGKKRTSELKRLMPNITQKMLTQQLRELEADG 56 (107)
T ss_dssp THHHHHHHHT--TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHH--hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCC
Confidence 3456888885 4679999999999 999999999999998765
No 407
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=29.92 E-value=93 Score=25.60 Aligned_cols=54 Identities=20% Similarity=0.212 Sum_probs=44.0
Q ss_pred CCchhhHHHHHHHHHcCCceehhhhhhhcC-CCHHHHHHHHHHHHhhcCCceEeecCcc
Q 023862 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAG-LKLNEAQKALQALAADTDGFLEVSDEGD 136 (276)
Q Consensus 79 l~~~~~~rim~Ave~lg~rvTvgDVAa~aG-L~l~~Ae~aL~aLAsD~~GhLeVSesGD 136 (276)
|.-..|-+|++.+. .+..|++++|..-| ++...+-+-|..|... |-+++.++|.
T Consensus 20 La~P~Rl~il~~L~--~~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~a--glv~~~~e~~ 74 (182)
T 4g6q_A 20 LHHPLRWRITQLLI--GRSLTTRELAELLPDVATTTLYRQVGILVKA--GVLMVTAEHQ 74 (182)
T ss_dssp TTSHHHHHHHHHTT--TSCEEHHHHHHHCTTBCHHHHHHHHHHHHHH--TSEEEEEEEE
T ss_pred hCCHHHHHHHHHHH--hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHC--CCeEEEEeec
Confidence 55668899999985 46799999999986 9999998899988764 7788877663
No 408
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=29.58 E-value=77 Score=25.03 Aligned_cols=48 Identities=27% Similarity=0.420 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHcCC-------------ceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 83 VRNRAMDAVDACNR-------------RVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 83 ~~~rim~Ave~lg~-------------rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
.+.|+...+..+.. .+|..|+|...|++.+.+-+.|..|..+ |-+++.
T Consensus 160 ~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvsR~l~~L~~~--g~I~~~ 220 (230)
T 3iwz_A 160 VTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQAD--GLLHAR 220 (230)
T ss_dssp HHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHHHHHHHHHHC--CCEEEC
Confidence 44666666665422 3688999999999999999999999865 455543
No 409
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=29.48 E-value=54 Score=26.78 Aligned_cols=39 Identities=15% Similarity=0.016 Sum_probs=34.9
Q ss_pred HHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcC
Q 023862 88 MDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTD 126 (276)
Q Consensus 88 m~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~ 126 (276)
.=|...+|...|+.||+..+|++..+.++.+..|....+
T Consensus 156 y~A~~~~~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 156 YIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp HHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 456778899999999999999999999999999998766
No 410
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=29.32 E-value=58 Score=24.02 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=34.6
Q ss_pred cCCCCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCC
Q 023862 76 SDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDG 127 (276)
Q Consensus 76 ~~~l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~G 127 (276)
.+.|+..- .+|+..+ -.+.|..+||...|++...++.-+..+-.+.+.
T Consensus 27 ~~~Lt~rE-~~Vl~l~---~~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv 74 (90)
T 3ulq_B 27 QDVLTPRE-CLILQEV---EKGFTNQEIADALHLSKRSIEYSLTSIFNKLNV 74 (90)
T ss_dssp --CCCHHH-HHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred ccCCCHHH-HHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 34455432 2344444 366799999999999999999999998887765
No 411
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=29.31 E-value=2.3e+02 Score=23.63 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=39.2
Q ss_pred hHHHHHHHHHcC-Cceeh--hhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcCcc
Q 023862 84 RNRAMDAVDACN-RRVTI--GDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNN 144 (276)
Q Consensus 84 ~~rim~Ave~lg-~rvTv--gDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP~n 144 (276)
...+++++-.++ ..+|+ .|+|...|++...+.+.|..|.++ |-++...++ .++.=+.+
T Consensus 8 ~e~~L~~L~~l~~~~~~~~~~~La~~l~vs~~tvs~~l~~Le~~--GlV~r~~~~-~v~LT~~G 68 (230)
T 1fx7_A 8 TEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERD--GLLRVAGDR-HLELTEKG 68 (230)
T ss_dssp HHHHHHHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEECTTS-CEEECHHH
T ss_pred HHHHHHHHHHHhhcCCCCcHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEeCCc-cEEECHHH
Confidence 445555554331 23555 999999999999999999999876 566665543 44444443
No 412
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=29.30 E-value=66 Score=25.64 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=30.0
Q ss_pred CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 96 RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 96 ~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
..+|..|+|...|++...+-+.|..|..+ |-+++.
T Consensus 174 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~--g~I~~~ 208 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVSRVLKRLEAH--NILEVS 208 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEC
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHC--CcEEec
Confidence 36799999999999999999999999764 666664
No 413
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=29.28 E-value=33 Score=24.27 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=19.8
Q ss_pred CCCchhhHHHHHHHHHcCCcee
Q 023862 78 KLPADVRNRAMDAVDACNRRVT 99 (276)
Q Consensus 78 ~l~~~~~~rim~Ave~lg~rvT 99 (276)
.+..+.+.+|+++++++||+..
T Consensus 29 ~vs~et~~rI~~aa~~lgY~pn 50 (65)
T 1uxc_A 29 RVSDKTVEKVMAVVREHNYHPN 50 (65)
T ss_dssp TCTTHHHHHHHHHHHHHTCCCC
T ss_pred CCCHHHHHHHHHHHHHhCCCcc
Confidence 6889999999999999999754
No 414
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=29.23 E-value=14 Score=28.90 Aligned_cols=84 Identities=11% Similarity=0.150 Sum_probs=51.9
Q ss_pred CCchhhHHHHHHHHHc----CCce-ehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEcCcchH---HHhh
Q 023862 79 LPADVRNRAMDAVDAC----NRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYR---AKLA 150 (276)
Q Consensus 79 l~~~~~~rim~Ave~l----g~rv-TvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP~nfR---s~L~ 150 (276)
+...+-..|.+.+... |.++ +..++|.+-|+|...+++||..|.++ |-|+... |-=.|+=+.+-. ..++
T Consensus 12 ~~~~i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~--G~i~~~~-~~G~~V~~~~~~~~~~~~~ 88 (126)
T 3ic7_A 12 IYLQIADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQ--EVIYNKR-GIGFFVASGAKMLIHSLRK 88 (126)
T ss_dssp CTTHHHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTT--TSEEEET-TTEEEECTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CcEEEEc-CCccEEccCcHHHHHHHHH
Confidence 4444555666666543 4556 89999999999999999999999976 4565443 333555544433 2222
Q ss_pred hhhHHHhHHHHHHHH
Q 023862 151 AKSFRLKVEPVIDKA 165 (276)
Q Consensus 151 ~Ks~r~rl~~~~~k~ 165 (276)
...++..++.+....
T Consensus 89 ~~~~~~~le~~~~~~ 103 (126)
T 3ic7_A 89 EQFLKEEVGSFFRQL 103 (126)
T ss_dssp TTCCCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 234444555555443
No 415
>4ac0_A Tetracycline repressor protein class B from trans TN1 0; transcription; HET: MIY; 2.45A {Escherichia coli}
Probab=29.13 E-value=18 Score=29.72 Aligned_cols=30 Identities=13% Similarity=0.319 Sum_probs=22.1
Q ss_pred hHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023862 84 RNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 84 ~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
|++|+++ +.+.|+ .+|+.|||.++|++...
T Consensus 5 r~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~t 39 (202)
T 4ac0_A 5 KSKVINSALELLNEVGIEGLTTRKLAQKLGVEQPT 39 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCchh
Confidence 4555544 455687 79999999999987653
No 416
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=29.08 E-value=57 Score=25.53 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=38.8
Q ss_pred chhhHHHHHHHHHcC-------------CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeec
Q 023862 81 ADVRNRAMDAVDACN-------------RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (276)
Q Consensus 81 ~~~~~rim~Ave~lg-------------~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSe 133 (276)
.+...|+...+..+. ..+|..|+|...|++...+-+.|..|..+ |-+++..
T Consensus 110 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~--g~I~~~~ 173 (195)
T 3b02_A 110 GELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVLADLRRE--GLIATAY 173 (195)
T ss_dssp SCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHHHHH--TSEEEET
T ss_pred CCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHHHHHC--CCEEecC
Confidence 445677777776532 24789999999999999999999999876 4566543
No 417
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=28.98 E-value=2.3e+02 Score=23.23 Aligned_cols=50 Identities=24% Similarity=0.373 Sum_probs=37.8
Q ss_pred cCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeec-CccEEEEcCcchHH
Q 023862 94 CNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD-EGDVLYVFPNNYRA 147 (276)
Q Consensus 94 lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSe-sGDIlYvFP~nfRs 147 (276)
-|.+++..++|.+-|+|..-+++||..|.++ |-+++.. .| .||-+-+...
T Consensus 36 pG~~L~E~~La~~lgVSRtpVREAl~~L~~e--Glv~~~~~~G--~~V~~~~~~~ 86 (222)
T 3ihu_A 36 PGQRLVETDLVAHFGVGRNSVREALQRLAAE--GIVDLQRHRG--AVIRRLSLQE 86 (222)
T ss_dssp TTCEECHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEECSTTC--EEECCCCHHH
T ss_pred CCCccCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEEecCCC--eEEecCCHHH
Confidence 4788998899999999999999999999976 5566543 34 4454444433
No 418
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=28.92 E-value=34 Score=24.37 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=19.1
Q ss_pred CCCchhhHHHHHHHHHcCCcee
Q 023862 78 KLPADVRNRAMDAVDACNRRVT 99 (276)
Q Consensus 78 ~l~~~~~~rim~Ave~lg~rvT 99 (276)
.+..+.+.+|+++++++||+..
T Consensus 35 ~vs~~t~~rV~~~a~~lgY~pn 56 (67)
T 2l8n_A 35 KVSQATRNRVEKAAREVGYLPQ 56 (67)
T ss_dssp CSCHHHHHHHHHHHHHHCCCC-
T ss_pred CCCHHHHHHHHHHHHHhCCCcc
Confidence 4789999999999999999754
No 419
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=28.75 E-value=32 Score=28.76 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHH----cCC-ceehhhhhhhcCCCHHH
Q 023862 82 DVRNRAMDAVDA----CNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 82 ~~~~rim~Ave~----lg~-rvTvgDVAa~aGL~l~~ 113 (276)
..+++|+++..+ .|+ .+|+.+||.++|++...
T Consensus 29 ~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~t 65 (241)
T 2hxi_A 29 WSTEQILDAAAELLLAGDAETFSVRKLAASLGTDSSS 65 (241)
T ss_dssp CCHHHHHHHHHHHHSSSSCCCCCHHHHHHHTTSCHHH
T ss_pred hHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCcCHHH
Confidence 445677766555 475 68999999999988654
No 420
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=28.44 E-value=34 Score=29.20 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=24.7
Q ss_pred CchhhHHHHHH----HHHcCCc-eehhhhhhhcCCCHHH
Q 023862 80 PADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (276)
Q Consensus 80 ~~~~~~rim~A----ve~lg~r-vTvgDVAa~aGL~l~~ 113 (276)
....+.+|+++ +.+.|+. +|+.|||.++|++...
T Consensus 118 ~~~~r~~il~aa~~l~~~~G~~~~T~~~IA~~AGvs~gt 156 (311)
T 4ich_A 118 QSEARRRILETAWRLIARRGYHNVRIHDIASELGTSNAT 156 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHH
T ss_pred hhhHHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCCchh
Confidence 34556666665 4566865 9999999999987643
No 421
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=28.23 E-value=85 Score=28.10 Aligned_cols=58 Identities=28% Similarity=0.360 Sum_probs=44.5
Q ss_pred ccCCCCchhhHHHHHHHHHcCCce-----ehhhhhhhcCCCHHHHHHHHHHHHhhc---CCceEee
Q 023862 75 ESDKLPADVRNRAMDAVDACNRRV-----TIGDVAGKAGLKLNEAQKALQALAADT---DGFLEVS 132 (276)
Q Consensus 75 ~~~~l~~~~~~rim~Ave~lg~rv-----TvgDVAa~aGL~l~~Ae~aL~aLAsD~---~GhLeVS 132 (276)
+.+.||++.|-+||+.++.++-.. =+-|....-+-.+..++.++..|..+. .++-||+
T Consensus 110 ~~~~l~p~~r~~~~~~~~~l~e~~~~~vvfLVDtSgSM~~kl~~vk~al~~Ll~sl~~~~~~~~Va 175 (242)
T 3rag_A 110 STEDLPPADRARVMQVVEKLEDEVALHLVVCLDTSASMRDKIPTVREAVRDLALSLKVRSGPLAVS 175 (242)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHSCEEEEEEEECSGGGTTTHHHHHHHHHHHHHHHTTSSSCEEEE
T ss_pred ccccCCcchhcchhhhhhhhcccCCCCEEEEEECcccHHHHHHHHHHHHHHHHHHHhccCCCcEEE
Confidence 888999999999999999955432 233666555569999999999999874 3456665
No 422
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=27.95 E-value=2e+02 Score=25.78 Aligned_cols=68 Identities=18% Similarity=0.192 Sum_probs=52.0
Q ss_pred CchhhHHHHHHH----HHcCCceehhh---hhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEE-EEcCcchHHHh
Q 023862 80 PADVRNRAMDAV----DACNRRVTIGD---VAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVL-YVFPNNYRAKL 149 (276)
Q Consensus 80 ~~~~~~rim~Av----e~lg~rvTvgD---VAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIl-YvFP~nfRs~L 149 (276)
|+..+.-|+... ...|+.+.+++ +.+.-|++-.-++.+|..|.++ |.|+..+.|.-. |.-...=+..+
T Consensus 21 ~~~a~Sli~tl~Gd~~~~~g~~i~~~~Li~l~~~~Gi~~~avR~Al~RL~~~--G~l~~~~~Gr~~~Y~Lt~~g~~~l 96 (266)
T 3l09_A 21 PLKLWSVLVTCLGDVSRDGVIEVSGVALSSFVERMGLQPQAMRVALHRLKRD--GWVESRRLGRVGFHRLSDSALTQT 96 (266)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCCEEHHHHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEEEEETTEEEEEECHHHHHHH
T ss_pred CCChhHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCchHHHHHHHHHHHC--CCeeeeecCCcceEEECHHHHHHH
Confidence 456667776655 88899999997 8889999999999999999875 789988887554 44444444433
No 423
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=27.89 E-value=60 Score=21.11 Aligned_cols=33 Identities=6% Similarity=0.055 Sum_probs=26.9
Q ss_pred CCceehhhhhhhcCCCHHHHHHHHHHHHhhcCC
Q 023862 95 NRRVTIGDVAGKAGLKLNEAQKALQALAADTDG 127 (276)
Q Consensus 95 g~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~G 127 (276)
..+.|..|||...|++...++.-+..+-...+.
T Consensus 11 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 11 DEGYTNHGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp HTSCCSHHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 445699999999999999999888877665543
No 424
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=27.71 E-value=68 Score=25.42 Aligned_cols=50 Identities=18% Similarity=0.161 Sum_probs=38.2
Q ss_pred chhhHHHHHHHHHc----C----------CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 81 ADVRNRAMDAVDAC----N----------RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 81 ~~~~~rim~Ave~l----g----------~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
.+...|+...+..+ | ..+|..|+|...|++...+-+.|..|..+ |-+++.
T Consensus 137 ~~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~--g~I~~~ 200 (220)
T 2fmy_A 137 KDARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFKKM--GILERV 200 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEES
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHC--CCEEEc
Confidence 35566666665543 2 46899999999999999999999999765 567665
No 425
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=27.70 E-value=1.2e+02 Score=21.55 Aligned_cols=47 Identities=6% Similarity=0.075 Sum_probs=33.6
Q ss_pred CCCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCc
Q 023862 78 KLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGF 128 (276)
Q Consensus 78 ~l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~Gh 128 (276)
+|+..-+ +|+..+ -.+.|..|||...|++...++.-+..+-.+.+.+
T Consensus 21 ~Lt~~e~-~vl~l~---~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 21 QLTPRER-DILKLI---AQGLPNKMIARRLDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp GSCHHHH-HHHHHH---TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred cCCHHHH-HHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 4555443 333333 4568999999999999999999888776665543
No 426
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=27.27 E-value=77 Score=25.15 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=29.0
Q ss_pred ceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 97 RVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 97 rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
.+|..|+|...|++...+-+.|..|..+ |-+++.
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~--g~I~~~ 210 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAHR--GWIRLE 210 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHC--CCEEec
Confidence 4799999999999999999999999765 456654
No 427
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=27.15 E-value=1.4e+02 Score=23.84 Aligned_cols=56 Identities=14% Similarity=0.092 Sum_probs=41.7
Q ss_pred CCchhhHHHHHHHHHcC----------CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccEE
Q 023862 79 LPADVRNRAMDAVDACN----------RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVL 138 (276)
Q Consensus 79 l~~~~~~rim~Ave~lg----------~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIl 138 (276)
.-.+...|+...+..+. -.+|..|+|...|++...+-+.|..|..+. |+ .+.|.|.
T Consensus 150 ~~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~g---i~-~~~~~i~ 215 (237)
T 3fx3_A 150 KAQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGMKPESLSRAFSRLKAAG---VT-VKRNHAE 215 (237)
T ss_dssp CCCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTCCHHHHHHHHHHHGGGT---EE-CCTTEEE
T ss_pred hcCCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHCC---eE-eeCCEEE
Confidence 34556788888887753 235688999999999999999999998874 54 3445443
No 428
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=26.95 E-value=1.1e+02 Score=21.95 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=30.4
Q ss_pred CCCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHH
Q 023862 78 KLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQA 120 (276)
Q Consensus 78 ~l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~a 120 (276)
+.+.+.+..+++.++ .| .|+.+||.+.|++.....+-+..
T Consensus 22 ~ys~e~k~~~v~~~~-~g--~s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 22 SLTPRDKIHAIQRIH-DG--ESKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp SCCHHHHHHHHHHHH-HT--CCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CC--CCHHHHHHHHCcCHHHHHHHHHH
Confidence 566777777877774 33 79999999999998887665543
No 429
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=26.91 E-value=41 Score=27.50 Aligned_cols=39 Identities=18% Similarity=0.185 Sum_probs=31.1
Q ss_pred HHHHHHHHc-CCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023862 86 RAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (276)
Q Consensus 86 rim~Ave~l-g~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD 124 (276)
++|-.+... +..+|..++|.+.|++..-.++-|..|...
T Consensus 16 r~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~a 55 (162)
T 3k69_A 16 HSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKH 55 (162)
T ss_dssp HHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 344444443 567999999999999999999999999875
No 430
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=26.89 E-value=93 Score=24.32 Aligned_cols=48 Identities=21% Similarity=0.338 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHcC-------------CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 83 VRNRAMDAVDACN-------------RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 83 ~~~rim~Ave~lg-------------~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
+..|+...+..+. ..+|..|+|...|++.+.+-+.|..|..+ |-+++.
T Consensus 119 ~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~--g~I~~~ 179 (202)
T 2zcw_A 119 LKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELARE--GYIRSG 179 (202)
T ss_dssp HHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHHHC--CCEEeC
Confidence 4556666666542 24788999999999999999999999765 556653
No 431
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=26.82 E-value=72 Score=20.66 Aligned_cols=29 Identities=14% Similarity=0.152 Sum_probs=21.1
Q ss_pred HHHHHHHHHcCCceehhhhhhhcCCCHHHHH
Q 023862 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQ 115 (276)
Q Consensus 85 ~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae 115 (276)
.++-+..++.| .|..|+|...|++.....
T Consensus 4 ~~l~~~r~~~g--lsq~~lA~~~gis~~~i~ 32 (69)
T 1r69_A 4 SRVKSKRIQLG--LNQAELAQKVGTTQQSIE 32 (69)
T ss_dssp HHHHHHHHHTT--CCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHCcCHHHHH
Confidence 45555555554 799999999999976653
No 432
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=26.78 E-value=1.3e+02 Score=25.80 Aligned_cols=52 Identities=13% Similarity=0.313 Sum_probs=36.7
Q ss_pred HHHHHHH-HHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccE
Q 023862 85 NRAMDAV-DACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDV 137 (276)
Q Consensus 85 ~rim~Av-e~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDI 137 (276)
.++++++ +..+..+++.++|...|++...+++-|....-+. |-++.+..|.+
T Consensus 266 ~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~-gli~~~~~g~~ 318 (338)
T 3pfi_A 266 LRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLAN-GYIERTAKGRI 318 (338)
T ss_dssp HHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHT-TSEEEETTEEE
T ss_pred HHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHc-CceecCCCccc
Confidence 3444444 4456678999999999999999998888444443 66666666654
No 433
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=26.78 E-value=66 Score=20.70 Aligned_cols=31 Identities=6% Similarity=0.000 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHH
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEA 114 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~A 114 (276)
.+-.++-+..++.| .|..|+|.+.|++....
T Consensus 5 ~~~~~l~~~r~~~g--~s~~~lA~~~gis~~~i 35 (68)
T 2r1j_L 5 LMGERIRARRKKLK--IRQAALGKMVGVSNVAI 35 (68)
T ss_dssp CHHHHHHHHHHHHT--CCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHCCCHHHH
Confidence 44566666666665 69999999999997665
No 434
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=26.52 E-value=89 Score=28.58 Aligned_cols=43 Identities=9% Similarity=0.064 Sum_probs=36.3
Q ss_pred hhhHHHHHH----HHHcCCceehhhhhhhc--CCCHHHHHHHHHHHHhh
Q 023862 82 DVRNRAMDA----VDACNRRVTIGDVAGKA--GLKLNEAQKALQALAAD 124 (276)
Q Consensus 82 ~~~~rim~A----ve~lg~rvTvgDVAa~a--GL~l~~Ae~aL~aLAsD 124 (276)
+-+.+|+++ .-+.++.|++.++|.+. |+|...+++.|..|...
T Consensus 17 eR~~~IL~~i~~~yl~~~~pV~s~~La~~~~l~VS~aTIRrDL~~LE~~ 65 (338)
T 1stz_A 17 DRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYL 65 (338)
T ss_dssp HHHHHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCccHHHHHHHhCCCCCHHHHHHHHHHHHHC
Confidence 566778885 33458899999999999 99999999999999886
No 435
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=26.26 E-value=82 Score=20.67 Aligned_cols=31 Identities=16% Similarity=0.082 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHH
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEA 114 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~A 114 (276)
.+-.++-+..++.| .|..|+|.+.|++....
T Consensus 13 ~~~~~l~~~r~~~g--~s~~~lA~~~gis~~~i 43 (74)
T 1y7y_A 13 KFGQRLRELRTAKG--LSQETLAFLSGLDRSYV 43 (74)
T ss_dssp HHHHHHHHHHHHTT--CCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHCcCHHHH
Confidence 34455555555554 79999999999997665
No 436
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=26.17 E-value=15 Score=31.73 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=0.4
Q ss_pred CCCCchhhHHHHHHHHHcCCce-ehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023862 77 DKLPADVRNRAMDAVDACNRRV-TIGDVAGKAGLKLNEAQKALQALAADT 125 (276)
Q Consensus 77 ~~l~~~~~~rim~Ave~lg~rv-TvgDVAa~aGL~l~~Ae~aL~aLAsD~ 125 (276)
+.+-..++.+|.+-.=+-|.++ |..++|.+-|+|...+++||..|.++.
T Consensus 19 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G 68 (247)
T 2ra5_A 19 FQLSQQLEAAIEHGALTPGSLLGNEIELAARLGLSRPTVRQAIQSLVDKG 68 (247)
T ss_dssp -------------------------------------------------C
T ss_pred HHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3444445555554444456677 899999999999999999999998863
No 437
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=26.15 E-value=79 Score=27.59 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=41.9
Q ss_pred CchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe-ecCcc
Q 023862 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV-SDEGD 136 (276)
Q Consensus 80 ~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeV-SesGD 136 (276)
....|.+|+..+.+ +..|++|+|...|++...+.+-|..|... |-++. ...|.
T Consensus 10 ~~~~R~~IL~~L~~--g~~s~~ELa~~lglS~stVs~hL~~Le~a--GLV~~~~~~gr 63 (232)
T 2qlz_A 10 GNKVRRDLLSHLTC--MECYFSLLSSKVSVSSTAVAKHLKIMERE--GVLQSYEKEER 63 (232)
T ss_dssp TSHHHHHHHHHHTT--TTTCSSSSCTTCCCCHHHHHHHHHHHHHT--TSEEEEEECC-
T ss_pred CCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEeeecCC
Confidence 34567889999874 56999999999999999999999999764 56665 45553
No 438
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=25.98 E-value=67 Score=21.22 Aligned_cols=31 Identities=6% Similarity=0.000 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHH
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEA 114 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~A 114 (276)
++-.++-++.++.| .|..|+|.++|++....
T Consensus 5 ~~~~~l~~~r~~~g--ls~~~lA~~~gis~~~i 35 (76)
T 1adr_A 5 LMGERIRARRKKLK--IRQAALGKMVGVSNVAI 35 (76)
T ss_dssp CHHHHHHHHHHHHT--CCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHCcCHHHH
Confidence 35566666666665 69999999999987665
No 439
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=25.44 E-value=95 Score=27.95 Aligned_cols=52 Identities=21% Similarity=0.254 Sum_probs=38.1
Q ss_pred cccccCCCCchhhHHHHHHHHHcCCceehhhh--------hhhcCCCHHHHHHHHHHHHhhc
Q 023862 72 RIVESDKLPADVRNRAMDAVDACNRRVTIGDV--------AGKAGLKLNEAQKALQALAADT 125 (276)
Q Consensus 72 ~~v~~~~l~~~~~~rim~Ave~lg~rvTvgDV--------Aa~aGL~l~~Ae~aL~aLAsD~ 125 (276)
+..+-++|| .+.+...+.+++.|+. |+.|| +..+|++.++|++.|.+.....
T Consensus 33 ~~~~l~~l~-Gi~~~~~~kL~~ag~~-t~~~~~~~~~~~L~~~~~~s~~~~~~~l~~~~~~~ 92 (349)
T 1pzn_A 33 IIRSIEDLP-GVGPATAEKLREAGYD-TLEAIAVASPIELKEVAGISEGTALKIIQAARKAA 92 (349)
T ss_dssp --CCSSCCT-TCCHHHHHHHHTTTCC-SHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_pred ccccHHHcC-CCCHHHHHHHHHcCCC-cHHHHHhCCHHHHHhhcCCCHHHHHHHHHHHhhhc
Confidence 344567776 7889999999998875 55555 5678999999998888765543
No 440
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=25.31 E-value=1.2e+02 Score=19.93 Aligned_cols=50 Identities=12% Similarity=0.020 Sum_probs=31.9
Q ss_pred CCCCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCce
Q 023862 77 DKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFL 129 (276)
Q Consensus 77 ~~l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhL 129 (276)
++||..-+.-+ ... .-...|..|||...|++...+++.+...-..-...|
T Consensus 14 ~~L~~~~r~il-~l~--~~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 14 ADLTTDQREAL-LLT--QLLGLSYADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp TSSCHHHHHHH-HHH--HTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred HhCCHHHHHHH-HHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 45665444333 221 144579999999999999999877766555444333
No 441
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=25.18 E-value=1e+02 Score=24.88 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=40.5
Q ss_pred CchhhHHHHHHHHHcC--------CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee
Q 023862 80 PADVRNRAMDAVDACN--------RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 80 ~~~~~~rim~Ave~lg--------~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
-.+...|+...+..+. .++|..|+|...|++.+.+-+.|..|..+ |-+++.
T Consensus 161 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~l~~~--glI~~~ 219 (232)
T 1zyb_A 161 TLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNELQDN--GLIELH 219 (232)
T ss_dssp CCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHHHHHHHHHHT--TSCEEE
T ss_pred hcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCChhHHHHHHHHHHHC--CCEEec
Confidence 4567788888887752 35799999999999999999999999765 445544
No 442
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=25.05 E-value=29 Score=30.52 Aligned_cols=49 Identities=18% Similarity=0.195 Sum_probs=35.6
Q ss_pred CCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023862 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (276)
Q Consensus 79 l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeV 131 (276)
|-..++-.|.+++.+ +..|+.|+|+++|++..-.++=|+.|++- |.|+-
T Consensus 39 l~~a~~lglf~~l~~--g~~t~~elA~~~g~~~~~l~rlLr~l~~~--g~l~~ 87 (348)
T 3lst_A 39 LRAAAAVGVADHLVD--GPRTPAELAAATGTDADALRRVLRLLAVR--DVVRE 87 (348)
T ss_dssp HHHHHHHTGGGGGTT--SCBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHcCchhHhhC--CCCCHHHHHHHhCcCHHHHHHHHHHHHhC--CCEEe
Confidence 333444444455542 47999999999999999999999999874 55554
No 443
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=25.04 E-value=1.3e+02 Score=23.05 Aligned_cols=46 Identities=20% Similarity=0.197 Sum_probs=38.1
Q ss_pred cCCCCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023862 76 SDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (276)
Q Consensus 76 ~~~l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD 124 (276)
..++.++.+.+|+..++ . +.++.+||...|++...+.+-+...-..
T Consensus 30 ~~~~s~e~r~~iv~~~~-~--G~s~~~iA~~lgis~~TV~rw~~~~~~~ 75 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-Q--GVRPCDISRQLRVSHGCVSKILGRYYET 75 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-T--TCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-c--CCCHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 45788999999998885 3 3789999999999999998888876543
No 444
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=24.80 E-value=1.3e+02 Score=26.45 Aligned_cols=42 Identities=14% Similarity=0.216 Sum_probs=33.7
Q ss_pred cCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeecCccE
Q 023862 94 CNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDV 137 (276)
Q Consensus 94 lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDI 137 (276)
..+.+|+.|+|.+-|+|-..+++.|..|. ..|-+++.-.|..
T Consensus 18 ~~~~~~~~ela~~l~vS~~tIrRdL~~l~--~~G~v~iri~g~~ 59 (315)
T 2w48_A 18 YEQDMTQAQIARELGIYRTTISRLLKRGR--EQGIVTIAINYDY 59 (315)
T ss_dssp HTSCCCHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEEECSSC
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCcEEEEecCCc
Confidence 34559999999999999999999999884 4567775556644
No 445
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=24.75 E-value=46 Score=29.91 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=33.3
Q ss_pred HHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023862 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (276)
Q Consensus 86 rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD 124 (276)
+|++.+. .+.+|-.|+|.++||+...+.+-+..|.++
T Consensus 24 ~il~~l~--~~~~sr~~la~~~gls~~tv~~~v~~L~~~ 60 (380)
T 2hoe_A 24 RILKRIM--KSPVSRVELAEELGLTKTTVGEIAKIFLEK 60 (380)
T ss_dssp CSHHHHH--HSCBCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHH--cCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4788888 678999999999999999999999999775
No 446
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=24.70 E-value=38 Score=28.39 Aligned_cols=32 Identities=13% Similarity=0.121 Sum_probs=23.3
Q ss_pred hhHHHHHH----HHHcCC-ceehhhhhhhcCCCHHHH
Q 023862 83 VRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (276)
Q Consensus 83 ~~~rim~A----ve~lg~-rvTvgDVAa~aGL~l~~A 114 (276)
.+++|+++ +.+.|+ .+|+.+||.++|++....
T Consensus 7 tr~~Il~AA~~l~~~~G~~~~S~r~IA~~aGvs~~tl 43 (234)
T 2opt_A 7 TQDRIVVTALGILDAEGLDALSMRRLAQELKTGHASL 43 (234)
T ss_dssp CHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHH
T ss_pred CHHHHHHHHHHHHHhCCccccCHHHHHHHHCCChhHH
Confidence 35566554 455586 799999999999887543
No 447
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=24.60 E-value=87 Score=21.44 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=32.5
Q ss_pred CchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHH-----------HHHHHHhhcCCceE
Q 023862 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQK-----------ALQALAADTDGFLE 130 (276)
Q Consensus 80 ~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~-----------aL~aLAsD~~GhLe 130 (276)
.+++-.++-++.+++| .|..|+|.+.|++.....+ .|..||.-.+..++
T Consensus 10 ~~~~~~~l~~~r~~~g--lsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~~~~ 69 (88)
T 2wiu_B 10 PTQLANAMKLVRQQNG--WTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMT 69 (88)
T ss_dssp HHHHHHHHHHHHHHTT--CCHHHHHHHHTCCHHHHHHHHHCGGGCBHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHcC--CCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHH
Confidence 3455566666666654 7999999999998765532 35556665555544
No 448
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=24.45 E-value=1e+02 Score=21.07 Aligned_cols=43 Identities=14% Similarity=0.024 Sum_probs=28.6
Q ss_pred CCCCchhhHHHHHHH-HHcCCceehhhhhhhcCCCHHHHHHHHH
Q 023862 77 DKLPADVRNRAMDAV-DACNRRVTIGDVAGKAGLKLNEAQKALQ 119 (276)
Q Consensus 77 ~~l~~~~~~rim~Av-e~lg~rvTvgDVAa~aGL~l~~Ae~aL~ 119 (276)
+.||..-+.-+.-.. -.-+...|..|||...|+|...+++-+.
T Consensus 9 ~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ 52 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIEN 52 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 457665554442222 1112578999999999999999987443
No 449
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=24.42 E-value=52 Score=28.11 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=16.4
Q ss_pred CCCCchhhHHHHHHHHHcCCceehhhhhhhcC--------------CCHHHHHHHHHHHHhhcCCceEeec
Q 023862 77 DKLPADVRNRAMDAVDACNRRVTIGDVAGKAG--------------LKLNEAQKALQALAADTDGFLEVSD 133 (276)
Q Consensus 77 ~~l~~~~~~rim~Ave~lg~rvTvgDVAa~aG--------------L~l~~Ae~aL~aLAsD~~GhLeVSe 133 (276)
.++..+.|++|+++++++||+....--+.+++ ---.+.-+++.+-|.+.|-+|.+..
T Consensus 29 ~~vs~~tr~rV~~~~~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~ 99 (339)
T 3h5o_A 29 QQVSEQLREKVMQAVDALAYVPSRSASTLASAKSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGN 99 (339)
T ss_dssp ----------------------------------CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCcCHHHHhhhcCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 46788999999999999999865332111111 1124566788888888888776643
No 450
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=24.10 E-value=1e+02 Score=30.27 Aligned_cols=63 Identities=19% Similarity=0.127 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc---CCceEeecCccEEEEcCcchHHHhhh
Q 023862 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT---DGFLEVSDEGDVLYVFPNNYRAKLAA 151 (276)
Q Consensus 85 ~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~---~GhLeVSesGDIlYvFP~nfRs~L~~ 151 (276)
..|++.+.+.+ .+|..++|...|++..++++.|..|.... .|-|+-. |. .|......+..+.+
T Consensus 433 ~~iL~~l~~~~-~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~--g~-~y~L~~~~~~~~~~ 498 (583)
T 3lmm_A 433 AIVLYLLFQRP-FITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAH--DG-VWLLGNACREILRK 498 (583)
T ss_dssp HHHHHHHHHSS-SBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEE--TT-EEEECHHHHHHHTS
T ss_pred HHHHHHHHHCC-CcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEe--CC-EEEECHHHHHHhcc
Confidence 45777777654 79999999999999999999999998843 4555543 53 58887777776643
No 451
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=23.91 E-value=53 Score=27.44 Aligned_cols=48 Identities=17% Similarity=0.308 Sum_probs=36.6
Q ss_pred cCCce-ehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe--ec---CccEEEEcCc
Q 023862 94 CNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEV--SD---EGDVLYVFPN 143 (276)
Q Consensus 94 lg~rv-TvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeV--Se---sGDIlYvFP~ 143 (276)
-|.++ +-.++|.+-|+|..-+++||..|+++ |-+++ .. .|-.|-.++.
T Consensus 24 pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~--GlV~~~~~~~~~~G~~V~~~~~ 77 (239)
T 2di3_A 24 IGDHLPSERALSETLGVSRSSLREALRVLEAL--GTISTATGSGPRSGTIITAAPG 77 (239)
T ss_dssp TTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHH--TSEECCSTTSGGGCCEECCCCC
T ss_pred CCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCeEeecccCCCCCceeeCCcc
Confidence 46677 56799999999999999999999987 56666 43 3655555544
No 452
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=23.82 E-value=88 Score=22.34 Aligned_cols=51 Identities=6% Similarity=-0.104 Sum_probs=33.3
Q ss_pred CCCCchhhHHHHHHHHH--cCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCc
Q 023862 77 DKLPADVRNRAMDAVDA--CNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGF 128 (276)
Q Consensus 77 ~~l~~~~~~rim~Ave~--lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~Gh 128 (276)
+.||..-+.-+ ...-- .+...|..|||...|+|...+++-+...-..-...
T Consensus 17 ~~L~~~er~vl-~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~ 69 (87)
T 1tty_A 17 KTLSPREAMVL-RMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHP 69 (87)
T ss_dssp TTSCHHHHHHH-HHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTT
T ss_pred HhCCHHHHHHH-HHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 46766555443 22221 22679999999999999999987666554444333
No 453
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=23.80 E-value=82 Score=21.47 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHH
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEA 114 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~A 114 (276)
.+-.++-++-++.| .|+.|+|.+.|++....
T Consensus 14 ~~~~~l~~~R~~~g--ltq~elA~~~gis~~~i 44 (83)
T 3f6w_A 14 ALLDLLLEARSAAG--ITQKELAARLGRPQSFV 44 (83)
T ss_dssp HHHHHHHHHHHHHT--CCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHCcCHHHH
Confidence 34445555555554 79999999999987654
No 454
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=23.67 E-value=1.3e+02 Score=23.87 Aligned_cols=36 Identities=11% Similarity=0.271 Sum_probs=30.5
Q ss_pred CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeec
Q 023862 96 RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (276)
Q Consensus 96 ~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVSe 133 (276)
.++|..|+|...|++.+.+-+.|..|..+ |-+++..
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~--g~I~~~~ 214 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLSTFVSE--RMLALDG 214 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHT--TSEEEET
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHC--CCEeeCC
Confidence 46899999999999999999999999765 5666654
No 455
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=23.42 E-value=51 Score=25.12 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=28.4
Q ss_pred CchhhHHHHHHHHHc--CCceehhhhhhhcCCCHHHHHHHHHH
Q 023862 80 PADVRNRAMDAVDAC--NRRVTIGDVAGKAGLKLNEAQKALQA 120 (276)
Q Consensus 80 ~~~~~~rim~Ave~l--g~rvTvgDVAa~aGL~l~~Ae~aL~a 120 (276)
+.....++.++++-+ ....|+.|+|.+.|++...-.+..+.
T Consensus 74 ~~~~~~~l~~a~~~i~~~~~~sl~~lA~~~g~S~~~f~r~Fk~ 116 (133)
T 1u8b_A 74 RQHRLDKITHACRLLEQETPVTLEALADQVAMSPFHLHRLFKA 116 (133)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 333445555555555 47899999999999997766655543
No 456
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=23.30 E-value=1.1e+02 Score=23.53 Aligned_cols=47 Identities=9% Similarity=0.180 Sum_probs=37.0
Q ss_pred hhHHHHHHHHH-cCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023862 83 VRNRAMDAVDA-CNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (276)
Q Consensus 83 ~~~rim~Ave~-lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeV 131 (276)
.+-.++..+.. .++.+|++|+|...|++...+-+.+..|..+ |.++-
T Consensus 36 ~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~--Glv~r 83 (147)
T 4b8x_A 36 ARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRS--GLVAK 83 (147)
T ss_dssp HHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhC--CCEEE
Confidence 34567777654 3567999999999999999999999999875 44443
No 457
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=23.09 E-value=83 Score=26.43 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=27.3
Q ss_pred HHHHHHHHHc-CCceehhhhhhhcCCCHHHHHHHHH
Q 023862 85 NRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQ 119 (276)
Q Consensus 85 ~rim~Ave~l-g~rvTvgDVAa~aGL~l~~Ae~aL~ 119 (276)
.++++.+++. ....|+.|+|..+|+|...-++-..
T Consensus 6 ~~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~f~ 41 (292)
T 1d5y_A 6 RDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFK 41 (292)
T ss_dssp HHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4677777765 7789999999999999877655533
No 458
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=22.87 E-value=51 Score=27.60 Aligned_cols=32 Identities=19% Similarity=0.135 Sum_probs=23.6
Q ss_pred hhHHHHH----HHHHcCC-ceehhhhhhhcCCCHHHH
Q 023862 83 VRNRAMD----AVDACNR-RVTIGDVAGKAGLKLNEA 114 (276)
Q Consensus 83 ~~~rim~----Ave~lg~-rvTvgDVAa~aGL~l~~A 114 (276)
.+++|++ .+.+.|+ .+|+.|||.++|++....
T Consensus 20 tr~~Il~AA~~l~~e~G~~~~S~~~IA~~aGvs~~tl 56 (243)
T 2g7l_A 20 SRRWIVDTAVALMRAEGLEKVTMRRLAQELDTGPASL 56 (243)
T ss_dssp CHHHHHHHHHHHHHHHCSSSCCHHHHHHHTTSCHHHH
T ss_pred CHHHHHHHHHHHHHhcCchhcCHHHHHHHHCCChhHH
Confidence 3455554 4556787 699999999999887543
No 459
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=22.70 E-value=68 Score=27.25 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=12.9
Q ss_pred CCCCchhhHHHHHHHHHcCCceehhhhhhhcC-----------CC---HHHHHHHHHHHHhhcCCceEee
Q 023862 77 DKLPADVRNRAMDAVDACNRRVTIGDVAGKAG-----------LK---LNEAQKALQALAADTDGFLEVS 132 (276)
Q Consensus 77 ~~l~~~~~~rim~Ave~lg~rvTvgDVAa~aG-----------L~---l~~Ae~aL~aLAsD~~GhLeVS 132 (276)
.++..+.+++|+++++++||+....--+.+++ ++ -.+.-+++...|.+.|-+|.+.
T Consensus 27 ~~vs~~tr~rV~~~~~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~ 96 (330)
T 3ctp_A 27 GYVSEDAREKIQKVVDELNYTPNALARAMFTKNSKTIGLMVPNISNPFFNQMASVIEEYAKNKGYTLFLC 96 (330)
T ss_dssp ---------------------------------CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCcCHHHHHhhcCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHCCCEEEEE
Confidence 35778889999999999998754321111111 11 2344566666666666666543
No 460
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=22.60 E-value=64 Score=27.82 Aligned_cols=57 Identities=12% Similarity=0.103 Sum_probs=16.5
Q ss_pred CCCCchhhHHHHHHHHHcCCceehhhhhhhcC-----------CC---HHHHHHHHHHHHhhcCCceEeec
Q 023862 77 DKLPADVRNRAMDAVDACNRRVTIGDVAGKAG-----------LK---LNEAQKALQALAADTDGFLEVSD 133 (276)
Q Consensus 77 ~~l~~~~~~rim~Ave~lg~rvTvgDVAa~aG-----------L~---l~~Ae~aL~aLAsD~~GhLeVSe 133 (276)
.++..+.|++|+++++++||+....--+.+++ ++ -.+.-+++..-|.+.|-+|.+..
T Consensus 37 ~~vs~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~ 107 (355)
T 3e3m_A 37 SPISSETRERILKVVKDMNYVPDQVAGSLTTKRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGY 107 (355)
T ss_dssp ----------------------------------CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCcCHHHHhhhcCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 46888999999999999999865432222222 11 24556788888888888886643
No 461
>3lap_A Arginine repressor; arginine repressor, DNA binding, DNA-canavanine ternary complex; HET: GGB; 2.15A {Mycobacterium tuberculosis} PDB: 3fhz_A* 3ere_D* 3laj_A*
Probab=22.37 E-value=2.2e+02 Score=24.06 Aligned_cols=57 Identities=23% Similarity=0.413 Sum_probs=39.9
Q ss_pred cccccCCCCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee-cCccE-EEEcCcchH
Q 023862 72 RIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS-DEGDV-LYVFPNNYR 146 (276)
Q Consensus 72 ~~v~~~~l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS-esGDI-lYvFP~nfR 146 (276)
..++.+.+.. ++++.+.+++.|..||++=|. +.|..| |-.+|. ++|.- +|..|.+-.
T Consensus 27 ~iI~~~~I~t--QeEL~~~L~~~Gi~vTQATlS-----------RDikEL-----~lvKv~~~~G~~~~Y~lp~~~~ 85 (170)
T 3lap_A 27 AILSSAQVRS--QNELAALLAAEGIEVTQATLS-----------RDLEEL-----GAVKLRGADGGTGIYVVPEDGS 85 (170)
T ss_dssp HHHHHSCCCS--HHHHHHHHHHTTCCCCHHHHH-----------HHHHHH-----TCEEECCTTCTTCEEECCC---
T ss_pred HHHHhCCCCC--HHHHHHHHHHcCCCcCchhHH-----------HHHHHc-----CcEEeecCCCCEEEEEECcccc
Confidence 4555665544 788999999999999887654 566666 556665 47988 999997643
No 462
>2vpr_A Tetracycline resistance repressor protein; transcription, metal-binding, antibiotic resistance, transcr regulator; HET: TDC; 2.49A {Pasteurella multocida}
Probab=22.29 E-value=27 Score=28.50 Aligned_cols=31 Identities=16% Similarity=0.197 Sum_probs=22.8
Q ss_pred hhHHHHHHHH----HcCC-ceehhhhhhhcCCCHHH
Q 023862 83 VRNRAMDAVD----ACNR-RVTIGDVAGKAGLKLNE 113 (276)
Q Consensus 83 ~~~rim~Ave----~lg~-rvTvgDVAa~aGL~l~~ 113 (276)
.+++|+++.. +.|+ .+|+.|||.++|++...
T Consensus 5 tr~~Il~aA~~l~~~~G~~~~s~~~IA~~agvs~~t 40 (207)
T 2vpr_A 5 DKEQVIDNALILLNEVGIEGLTTRKLAQKIGVEQPT 40 (207)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHH
T ss_pred cHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhH
Confidence 4566666554 4576 49999999999987654
No 463
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=22.17 E-value=98 Score=22.96 Aligned_cols=64 Identities=11% Similarity=0.133 Sum_probs=40.9
Q ss_pred cccccCCCCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHH-----------HHHHHHHhhcCCceEeecCc
Q 023862 72 RIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQ-----------KALQALAADTDGFLEVSDEG 135 (276)
Q Consensus 72 ~~v~~~~l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae-----------~aL~aLAsD~~GhLeVSesG 135 (276)
..+..+.+.+.+-.+|-+.-++.....|+.|+|...|++..... ..|..||.-.+..++-.+-|
T Consensus 24 ~~~~~~~~~~~~g~~lk~~R~~~~~glsq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v~~~e~~~g 98 (107)
T 2jvl_A 24 DIIKPKTVGKEVGKAIEQGRQKFEPTMTQAELGKEIGETAATVASYERGTATPDQNILSKMERVLNVKLRGANIG 98 (107)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHTTTCSCCCHHHHHHHHHTTTCBSSSSSTT
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHhhhcCC
Confidence 34556677787877766554411456899999999999876653 23556666556555433333
No 464
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.15 E-value=1.4e+02 Score=24.15 Aligned_cols=61 Identities=8% Similarity=0.011 Sum_probs=42.0
Q ss_pred chhhHHHHHHHHHcCCceehhhhhhh-------cCCCHHHHHHHHHHHHhhcCCceEeecCccEEEEc
Q 023862 81 ADVRNRAMDAVDACNRRVTIGDVAGK-------AGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (276)
Q Consensus 81 ~~~~~rim~Ave~lg~rvTvgDVAa~-------aGL~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvF 141 (276)
...|..|++++.+.+.-+|+.||..+ .++++..+=+.|..|....=-+=-..++|...|..
T Consensus 32 T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~~~~~~~~Y~~ 99 (162)
T 4ets_A 32 TKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYEL 99 (162)
T ss_dssp CHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC-----CCEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCceEEEe
Confidence 44678889999999889999998663 35999999999999987653322122455555665
No 465
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=22.14 E-value=99 Score=21.77 Aligned_cols=32 Identities=6% Similarity=0.086 Sum_probs=24.3
Q ss_pred chhhHHHHHHHHHcCCceehhhhhhhcCCCHHHH
Q 023862 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEA 114 (276)
Q Consensus 81 ~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~A 114 (276)
|..-.++-+..++.| .|..|+|...|++....
T Consensus 3 m~~~~~l~~~r~~~g--ltq~~lA~~~gis~~~i 34 (99)
T 2l49_A 3 NTISEKIVLMRKSEY--LSRQQLADLTGVPYGTL 34 (99)
T ss_dssp CCTTHHHHHHHHHTT--CCHHHHHHHHCCCHHHH
T ss_pred hHHHHHHHHHHHHcC--CCHHHHHHHHCcCHHHH
Confidence 455667766666665 69999999999987665
No 466
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=22.02 E-value=61 Score=30.06 Aligned_cols=62 Identities=15% Similarity=0.170 Sum_probs=42.3
Q ss_pred HHHHHHHHHc-CCceehhhhhhhcCCCHHHHHHHHHHHHhhc---CCceEeecC---------ccEEEEcCcchHH
Q 023862 85 NRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQALAADT---DGFLEVSDE---------GDVLYVFPNNYRA 147 (276)
Q Consensus 85 ~rim~Ave~l-g~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~---~GhLeVSes---------GDIlYvFP~nfRs 147 (276)
-.|+-.+... ....|+.|++.++|++.++.++.|..|+.-. .+-|..++. || .|.|=.+|.+
T Consensus 202 a~ILllFn~~~~~~lt~~ei~~~t~i~~~~L~r~L~sL~~~~k~k~~iL~~~~~~~~~~~~~~~d-~f~~N~~F~~ 276 (382)
T 3dpl_C 202 LAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYEPQVNSPKDFTEGT-LFSVNQEFSL 276 (382)
T ss_dssp HHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHHHHHHHCCTTCSSCSEEESSCCSSGGGCCTTC-EEEECTTCCE
T ss_pred HHHHHHhccCCCCcCcHHHHHHHHCcCHHHHHHHHHHHhcccchhcceeeecCCccccCcCCCCC-EEEEcCCCcC
Confidence 3344444443 3689999999999999999999999998732 234554432 23 5666566653
No 467
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=21.78 E-value=1.1e+02 Score=21.87 Aligned_cols=43 Identities=7% Similarity=0.171 Sum_probs=31.0
Q ss_pred CCCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHH
Q 023862 78 KLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQAL 121 (276)
Q Consensus 78 ~l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aL 121 (276)
+.+.+.+.++++.+... ...|+.+||...|++.....+=+...
T Consensus 5 ~ys~e~k~~~v~~~~~~-~g~s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 5 TYSEEFKRDAVALYENS-DGASLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCCHHHHHHHHHHHTTG-GGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHc-CCChHHHHHHHHCcCHHHHHHHHHHH
Confidence 45666666676666432 15799999999999988887766554
No 468
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=21.70 E-value=72 Score=22.69 Aligned_cols=31 Identities=10% Similarity=0.008 Sum_probs=21.4
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHH
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEA 114 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~A 114 (276)
.+-.+|-++.++. +.|+.|+|.+.|++....
T Consensus 9 ~~~~~lk~~r~~~--glsq~~lA~~~gis~~~i 39 (94)
T 2kpj_A 9 IFSENLNSYIAKS--EKTQLEIAKSIGVSPQTF 39 (94)
T ss_dssp HHHHHHHHHHTTS--SSCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHc--CCCHHHHHHHHCcCHHHH
Confidence 3444555544444 489999999999986655
No 469
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=21.52 E-value=1.4e+02 Score=22.12 Aligned_cols=42 Identities=14% Similarity=0.035 Sum_probs=33.9
Q ss_pred CCCCchhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHH
Q 023862 77 DKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQAL 121 (276)
Q Consensus 77 ~~l~~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aL 121 (276)
..+.++.+.+|+..++ .| .|+.+||...|++...+.+-+...
T Consensus 5 ~~~s~~~r~~i~~~~~-~G--~s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LN--VSLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TT--CCHHHHHHHHTCCHHHHHHHHHSG
T ss_pred ccCCHHHHHHHHHHHH-cC--CCHHHHHHHHCcCHHHHHHHHHcc
Confidence 3577888888887774 33 699999999999999998887754
No 470
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=21.47 E-value=1.1e+02 Score=20.92 Aligned_cols=31 Identities=13% Similarity=0.135 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHH
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEA 114 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~A 114 (276)
.+..++-+..++. +.|..|+|...|++....
T Consensus 12 ~l~~~l~~~r~~~--gltq~~lA~~~gvs~~~i 42 (80)
T 3kz3_A 12 RLKAIWEKKKNEL--GLSYESVADKMGMGQSAV 42 (80)
T ss_dssp HHHHHHHHHHHHH--TCCHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHc--CCCHHHHHHHhCcCHHHH
Confidence 3444444444444 469999999999986655
No 471
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=21.44 E-value=2.1e+02 Score=20.19 Aligned_cols=45 Identities=13% Similarity=0.098 Sum_probs=34.2
Q ss_pred HHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEee--cCccEEEE
Q 023862 87 AMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS--DEGDVLYV 140 (276)
Q Consensus 87 im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeVS--esGDIlYv 140 (276)
+.++++.. +...+|..-|++-.-+-+.++ .+-.++++ ++|+++|.
T Consensus 7 L~~~~~~~----s~t~aA~~L~vtQ~AVS~~ir-----~~r~v~Lt~~~~G~~~~~ 53 (66)
T 2ovg_A 7 LKDYAMRF----GQTKTAKDLGVYPSSINQAIH-----AGRKIFLTINADGSVYAE 53 (66)
T ss_dssp HHHHHHHH----CHHHHHHHHTSCHHHHHHHHH-----HTCEEEEEECTTSCEEEE
T ss_pred HHHHHHHC----CHHHHHHHhCCCHHHHHHHHH-----hCCCceeEecCCcceeHH
Confidence 44566655 788999999999888877764 35567777 99999875
No 472
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=21.43 E-value=1.9e+02 Score=19.43 Aligned_cols=33 Identities=6% Similarity=-0.029 Sum_probs=27.2
Q ss_pred cCCceehhhhhhhcCCCHHHHHHHHHHHHhhcC
Q 023862 94 CNRRVTIGDVAGKAGLKLNEAQKALQALAADTD 126 (276)
Q Consensus 94 lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~ 126 (276)
.-...|..|||...|++...++.-+..+-...+
T Consensus 28 ~~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 28 VVAGLPNKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HTTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 356789999999999999999988877666544
No 473
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=21.36 E-value=1.1e+02 Score=20.59 Aligned_cols=31 Identities=10% Similarity=0.035 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHcCCceehhhhhhhcCCCHHHH
Q 023862 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEA 114 (276)
Q Consensus 82 ~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~A 114 (276)
.+-.++-+.-++. +.|..|+|..+|++....
T Consensus 10 ~~~~~l~~~r~~~--glsq~~lA~~~gis~~~i 40 (84)
T 2ef8_A 10 CLVQLLTKLRKEA--SLSQSELAIFLGLSQSDI 40 (84)
T ss_dssp HHHHHHHHHHHHT--TCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHc--CCCHHHHHHHhCCCHHHH
Confidence 3445555555554 479999999999987654
No 474
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=21.00 E-value=1.2e+02 Score=21.34 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=24.6
Q ss_pred chhhHHHHHHHHHcCCceehhhhhhhcCCCHHHHH
Q 023862 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQ 115 (276)
Q Consensus 81 ~~~~~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae 115 (276)
..+-.++-+..+++| .|..|+|...|++.....
T Consensus 7 ~~~g~~l~~~r~~~g--ltq~~lA~~~gis~~~is 39 (94)
T 2ict_A 7 PRPGDIIQESLDELN--VSLREFARAMEIAPSTAS 39 (94)
T ss_dssp CCHHHHHHHHHHHHT--CCHHHHHHHHTCCHHHHH
T ss_pred CChhHHHHHHHHHcC--CCHHHHHHHhCCCHHHHH
Confidence 345566766666665 799999999999976663
No 475
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=20.47 E-value=1.5e+02 Score=23.79 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=44.2
Q ss_pred HHHHHHHHHcCCceehhhhhhhcCCCHHH---HHHHHHHHHhhcCCceEeec-CccEEEEcCc
Q 023862 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNE---AQKALQALAADTDGFLEVSD-EGDVLYVFPN 143 (276)
Q Consensus 85 ~rim~Ave~lg~rvTvgDVAa~aGL~l~~---Ae~aL~aLAsD~~GhLeVSe-sGDIlYvFP~ 143 (276)
-.||--+-+..+.+|+.|+-++--+|... +|++|+++.....-.-||-- +-.-+|-.-+
T Consensus 17 aeimykil~~k~e~sledilaqfeis~~sayniqr~l~~ice~hpdecevq~knr~t~fkwik 79 (118)
T 2vqc_A 17 AEIMYKILEKKGELTLEDILAQFEISVPSAYNIQRALKAICERHPDECEVQYKNRKTTFKWIK 79 (118)
T ss_dssp HHHHHHHHHHHSEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHCTTTEEEEECSSCEEEEECC
T ss_pred HHHHHHHHHHcCcccHHHHHHHheeccchHhHHHHHHHHHHhcCCchhheeecchhHHHHHHh
Confidence 46776666677899999999999999876 48999999999977777643 4444444433
No 476
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=20.39 E-value=1.6e+02 Score=21.50 Aligned_cols=41 Identities=12% Similarity=0.149 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHcCCceehhhhhhhc-CCCHHHHHHHHHHHHhhc
Q 023862 83 VRNRAMDAVDACNRRVTIGDVAGKA-GLKLNEAQKALQALAADT 125 (276)
Q Consensus 83 ~~~rim~Ave~lg~rvTvgDVAa~a-GL~l~~Ae~aL~aLAsD~ 125 (276)
-+..|+..+. .+..|++|+|... |++...+-+.|..|..+.
T Consensus 26 ~~~~IL~~L~--~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~G 67 (107)
T 2fsw_A 26 WTLLIIFQIN--RRIIRYGELKRAIPGISEKMLIDELKFLCGKG 67 (107)
T ss_dssp SHHHHHHHHT--TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHH--hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCC
Confidence 3456788875 5679999999999 599999999999998764
No 477
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=20.37 E-value=20 Score=31.92 Aligned_cols=43 Identities=16% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023862 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (276)
Q Consensus 85 ~rim~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAsD~~GhLeV 131 (276)
.++.+++++.++.|-++=+...+|++.++|++.|. .++|||.-
T Consensus 260 ~~~~~~l~~~~~~~~~a~~~~~~~~~~~~a~~~l~----~~~~~~~~ 302 (306)
T 1nri_A 260 TLAEQTLLEADQNAKLAIMMILSTLSKSEAKVLLE----RHQGKLRN 302 (306)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHHHHhCCChHHHHHHHHhCCCHHHHHHHHH----HcCCcHHH
Confidence 44677888999999999888889999999976554 47777753
No 478
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=20.21 E-value=48 Score=28.63 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=18.6
Q ss_pred CCCCchhhHHHHHHHHHcCCc
Q 023862 77 DKLPADVRNRAMDAVDACNRR 97 (276)
Q Consensus 77 ~~l~~~~~~rim~Ave~lg~r 97 (276)
.++..+.|++|+++++++||+
T Consensus 34 ~~Vs~~tr~rV~~~a~~lgY~ 54 (366)
T 3h5t_A 34 EQLSAELRQRILDTAEDMGYL 54 (366)
T ss_dssp GGSCHHHHHHHHHHHHHTTC-
T ss_pred CCCCHHHHHHHHHHHHHhCCC
Confidence 468899999999999999998
No 479
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, strept coelicolor, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=20.08 E-value=63 Score=26.18 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=21.4
Q ss_pred HHHHHHHHcCCc-eehhhhhhhcCCCHHH
Q 023862 86 RAMDAVDACNRR-VTIGDVAGKAGLKLNE 113 (276)
Q Consensus 86 rim~Ave~lg~r-vTvgDVAa~aGL~l~~ 113 (276)
..++.+.+.|+. +|+.+||.++|++...
T Consensus 10 aA~~l~~~~G~~~~s~~~IA~~aGvs~~t 38 (209)
T 3bqy_A 10 TALDLLNESGLDTLTMRRLAQAMDVQAGA 38 (209)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHhCCcccCCHHHHHHHhCCCcch
Confidence 345556667875 9999999999988754
No 480
>3gr5_A ESCC; secretin, type III secretion system, outer membrane, transport, membrane protein; 2.05A {Escherichia coli}
Probab=20.08 E-value=51 Score=27.08 Aligned_cols=63 Identities=22% Similarity=0.260 Sum_probs=45.1
Q ss_pred CchhhHHHHHHHHHcCCceehhh-hhhhcC--CCHHHHHHHHHHHHhhcCCceEeecCccEEEEcCcc
Q 023862 80 PADVRNRAMDAVDACNRRVTIGD-VAGKAG--LKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNN 144 (276)
Q Consensus 80 ~~~~~~rim~Ave~lg~rvTvgD-VAa~aG--L~l~~Ae~aL~aLAsD~~GhLeVSesGDIlYvFP~n 144 (276)
..+++.-+-...+..|.-+.+.| |.-+-- +.....+++|..|+.-+| |..-.+|.++|++|.+
T Consensus 22 ~~~v~~vL~~lA~~~g~nivvs~~V~G~vs~rl~~~~~~q~L~~l~~~~g--L~~~~dG~vl~V~~~~ 87 (156)
T 3gr5_A 22 SSPVRAILNDFAANYSIPVFISSSVNDDFSGEIKNEKPVKVLEKLSKLYH--LTWYYDENILYIYKTN 87 (156)
T ss_dssp EEEHHHHHHHHHHHTTCCEEECTTCCCEEEEEEEEECHHHHHHHHHHHHT--EEEEECSSCEEEEEGG
T ss_pred CCCHHHHHHHHHHhhCCCEEECCCcceEEEEEecCCCHHHHHHHHHHHCC--ceEEEECCEEEEEchH
Confidence 34566666677778888888876 421111 333467888999998875 7778899999999975
Done!