BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023864
(276 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IWA|A Chain A, Unbound Glutaminyl Cyclotransferase From Carica Papaya.
pdb|2FAW|A Chain A, Crystal Structure Of Papaya Glutaminyl Cyclase
pdb|2FAW|B Chain B, Crystal Structure Of Papaya Glutaminyl Cyclase
Length = 266
Score = 259 bits (662), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 120/173 (69%), Positives = 146/173 (84%), Gaps = 1/173 (0%)
Query: 87 SPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM 146
S +Y ++V+NEFPHDP AFTQGL+YAENDTLFESTGLYGRSSVR+VAL+TGKVE I++M
Sbjct: 3 SSRVYIVEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM 62
Query: 147 EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGS 206
+ SYFGEGLTLL EKL+QV WL+ GFIYD+ L+ ++ FTHQMKDGWGLATDGK+L+GS
Sbjct: 63 DDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGS 122
Query: 207 DGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWPCI 259
DG+S+LY+IDP T K+I+K V+Y G V LNELE+I GEVWAN+WQ CI
Sbjct: 123 DGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQT-DCI 174
>pdb|3MBR|X Chain X, Crystal Structure Of The Glutaminyl Cyclase From
Xanthomonas Campestris
Length = 243
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 98/160 (61%), Gaps = 2/160 (1%)
Query: 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGE 153
+VV +PHD AFT+GL Y L+ESTG GRSSVR+V LETG++ ++ YFG
Sbjct: 10 RVVKRYPHDTTAFTEGLFYLRGH-LYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGA 68
Query: 154 GLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLY 213
G+ ++L Q+TW GF+YD L F + +GW L +D L+ SDG++++
Sbjct: 69 GIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYP-GEGWALTSDDSHLYMSDGTAVIR 127
Query: 214 QIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVW 253
++DP TL+ + V GR + NLNELE++ GE+ ANVW
Sbjct: 128 KLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVW 167
>pdb|3NOL|A Chain A, Crystal Structure Of Zymomonas Mobilis Glutaminyl Cyclase
(Trigonal Form)
pdb|3NOM|A Chain A, Crystal Structure Of Zymomonas Mobilis Glutaminyl Cyclase
(Monoclinic Form)
pdb|3NOM|B Chain B, Crystal Structure Of Zymomonas Mobilis Glutaminyl Cyclase
(Monoclinic Form)
Length = 262
Score = 121 bits (303), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 106/169 (62%), Gaps = 2/169 (1%)
Query: 87 SPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM 146
S IY Q+V+ +PHD +AFT+G Y N +ESTGL GRSS+R+V +E+GK ++
Sbjct: 25 SIPIYDYQIVHSYPHDTKAFTEGFFY-RNGYFYESTGLNGRSSIRKVDIESGKTLQQIEL 83
Query: 147 EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGS 206
YFGEG++ +K+ +TW GF+++ NL ++ F + +GWGL + + L S
Sbjct: 84 GKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYD-GEGWGLTHNDQYLIMS 142
Query: 207 DGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQV 255
DG+ +L +DP++L +R V G E+ LNELE++ GE++ANVWQ
Sbjct: 143 DGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQT 191
>pdb|3NOK|A Chain A, Crystal Structure Of Myxococcus Xanthus Glutaminyl Cyclase
pdb|3NOK|B Chain B, Crystal Structure Of Myxococcus Xanthus Glutaminyl Cyclase
Length = 268
Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 92/172 (53%), Gaps = 5/172 (2%)
Query: 83 GVDQSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEA 142
G Q P ++ E+PH AFTQGL++ + FESTG G ++R+++LE+ +
Sbjct: 33 GSVQEPVRRVAHIIREYPHATNAFTQGLVFHQGH-FFESTGHQG--TLRQLSLESAQPVW 89
Query: 143 INQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKV 202
+ ++ G+ F EGL GE+L+Q+TW + F + + E T +GWGL
Sbjct: 90 MERL-GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQR-ERTTRYSGEGWGLCYWNGK 147
Query: 203 LFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQ 254
L SDG +ML +P ++ V+ +G+ V +NELE G ++AN+W
Sbjct: 148 LVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWH 199
>pdb|2PYU|A Chain A, Structure Of The E. Coli Inosine Triphosphate
Pyrophosphatase Rgdb In Complex With Imp
Length = 219
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 123 GLYGRSS-VRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLN 181
GL R S +++V L TG V + ++ GL ++ + V ++TG + +N +
Sbjct: 13 GLVPRGSHMQKVVLATGNVGKVRELASLLSDFGLDIVAQTDLGVDSAEETGLTFIENAIL 72
Query: 182 KLEEFTH-----QMKDGWGLATDGKVLFGSDG 208
K + D GLA D VL G+ G
Sbjct: 73 KARHAAKVTALPAIADASGLAVD--VLGGAPG 102
>pdb|1F0X|A Chain A, Crystal Structure Of D-Lactate Dehydrogenase, A Peripheral
Membrane Respiratory Enzyme.
pdb|1F0X|B Chain B, Crystal Structure Of D-Lactate Dehydrogenase, A Peripheral
Membrane Respiratory Enzyme
Length = 571
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 102 DPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM 146
D A T A+ D LFES+G G+ +V V L+T + E Q+
Sbjct: 234 DIEADTPARYNADPDRLFESSGCAGKLAVFAVRLDTFEAEKNQQV 278
>pdb|2Q16|A Chain A, Structure Of The E. Coli Inosine Triphosphate
Pyrophosphatase Rgdb In Complex With Itp
pdb|2Q16|B Chain B, Structure Of The E. Coli Inosine Triphosphate
Pyrophosphatase Rgdb In Complex With Itp
Length = 219
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 123 GLYGRSS-VRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLN 181
GL R S ++V L TG V + ++ GL ++ + V ++TG + +N +
Sbjct: 13 GLVPRGSHXQKVVLATGNVGKVRELASLLSDFGLDIVAQTDLGVDSAEETGLTFIENAIL 72
Query: 182 KLEEFTH-----QMKDGWGLATDGKVLFGSDG 208
K + D GLA D VL G+ G
Sbjct: 73 KARHAAKVTALPAIADASGLAVD--VLGGAPG 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,551,644
Number of Sequences: 62578
Number of extensions: 306099
Number of successful extensions: 658
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 647
Number of HSP's gapped (non-prelim): 15
length of query: 276
length of database: 14,973,337
effective HSP length: 97
effective length of query: 179
effective length of database: 8,903,271
effective search space: 1593685509
effective search space used: 1593685509
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)