Query 023864
Match_columns 276
No_of_seqs 157 out of 551
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 07:12:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023864.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023864hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05096 Glu_cyclase_2: Glutam 100.0 4.8E-66 1E-70 474.0 28.1 188 84-274 24-211 (264)
2 COG3823 Glutamine cyclotransfe 100.0 5.1E-60 1.1E-64 421.3 17.1 185 86-274 27-212 (262)
3 TIGR02658 TTQ_MADH_Hv methylam 99.5 4.1E-12 9E-17 122.0 22.9 94 91-188 35-146 (352)
4 PF02239 Cytochrom_D1: Cytochr 99.5 4.8E-12 1E-16 121.6 21.4 168 92-270 25-207 (369)
5 TIGR02658 TTQ_MADH_Hv methylam 99.4 1.9E-11 4.1E-16 117.5 18.3 132 116-249 13-170 (352)
6 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 1.6E-10 3.4E-15 101.5 22.7 167 94-270 106-284 (300)
7 TIGR03866 PQQ_ABC_repeats PQQ- 99.3 4.1E-10 8.9E-15 98.8 22.0 164 93-269 21-191 (300)
8 PRK11028 6-phosphogluconolacto 99.3 3E-10 6.5E-15 105.0 19.3 171 93-268 70-261 (330)
9 PRK11028 6-phosphogluconolacto 99.3 2.6E-10 5.6E-15 105.4 18.7 152 108-268 129-309 (330)
10 PF02239 Cytochrom_D1: Cytochr 99.3 2.8E-10 6E-15 109.5 18.1 140 126-268 14-161 (369)
11 PF10282 Lactonase: Lactonase, 99.3 9.1E-10 2E-14 103.9 20.6 158 104-269 143-328 (345)
12 COG3391 Uncharacterized conser 99.2 5.7E-10 1.2E-14 107.3 18.6 161 105-271 74-245 (381)
13 PF08450 SGL: SMP-30/Gluconola 99.2 4.8E-09 1E-13 93.4 21.6 159 107-274 42-220 (246)
14 COG3391 Uncharacterized conser 99.2 2E-09 4.4E-14 103.5 20.0 174 92-271 105-289 (381)
15 PRK02888 nitrous-oxide reducta 99.2 5E-10 1.1E-14 114.0 15.0 144 114-266 202-405 (635)
16 PLN02919 haloacid dehalogenase 99.1 1.9E-08 4E-13 108.5 22.9 159 107-269 685-892 (1057)
17 PLN02919 haloacid dehalogenase 99.1 1.1E-08 2.4E-13 110.2 20.8 157 107-269 626-837 (1057)
18 PF13360 PQQ_2: PQQ-like domai 99.0 4.6E-07 1E-11 78.7 22.9 171 92-270 12-196 (238)
19 TIGR03300 assembly_YfgL outer 98.9 4.1E-07 8.8E-12 85.8 23.8 171 91-270 38-213 (377)
20 PF10282 Lactonase: Lactonase, 98.9 1.3E-07 2.8E-12 89.3 19.5 175 91-269 74-281 (345)
21 PF05096 Glu_cyclase_2: Glutam 98.9 2.9E-07 6.3E-12 85.6 21.2 165 92-263 77-259 (264)
22 PRK02888 nitrous-oxide reducta 98.9 7.4E-08 1.6E-12 98.4 16.3 156 102-269 130-355 (635)
23 PF13360 PQQ_2: PQQ-like domai 98.8 5.7E-07 1.2E-11 78.1 18.8 141 127-271 2-146 (238)
24 PRK11138 outer membrane biogen 98.7 2.3E-06 5.1E-11 81.7 20.9 151 111-269 66-227 (394)
25 PF08450 SGL: SMP-30/Gluconola 98.7 3.6E-06 7.9E-11 74.9 20.7 144 106-266 1-165 (246)
26 COG2706 3-carboxymuconate cycl 98.6 1.8E-06 3.8E-11 82.7 16.7 159 109-271 149-329 (346)
27 cd00200 WD40 WD40 domain, foun 98.6 2.2E-05 4.8E-10 65.7 20.4 155 106-269 95-253 (289)
28 cd00200 WD40 WD40 domain, foun 98.4 0.00012 2.6E-09 61.3 19.4 155 105-269 10-169 (289)
29 TIGR03300 assembly_YfgL outer 98.3 4.9E-05 1.1E-09 71.7 18.5 142 116-270 191-343 (377)
30 COG3386 Gluconolactonase [Carb 98.3 2.8E-05 6.1E-10 73.7 16.3 162 96-270 59-247 (307)
31 PRK11138 outer membrane biogen 98.3 5.3E-05 1.1E-09 72.5 18.0 137 115-264 256-393 (394)
32 PRK03629 tolB translocation pr 98.2 0.00021 4.6E-09 69.7 19.2 158 106-270 200-368 (429)
33 PF06977 SdiA-regulated: SdiA- 98.2 0.0002 4.4E-09 66.1 17.8 158 107-269 24-204 (248)
34 COG2706 3-carboxymuconate cycl 98.2 0.00016 3.4E-09 69.5 17.5 174 92-271 77-282 (346)
35 TIGR02800 propeller_TolB tol-p 98.1 0.00022 4.7E-09 67.6 18.3 156 106-269 191-358 (417)
36 PF06433 Me-amine-dh_H: Methyl 98.1 4.5E-05 9.8E-10 73.4 12.6 114 160-275 3-135 (342)
37 PF07433 DUF1513: Protein of u 98.1 0.00011 2.5E-09 69.7 15.1 141 109-255 9-184 (305)
38 COG4257 Vgb Streptogramin lyas 98.1 8.7E-05 1.9E-09 70.1 13.4 160 96-268 53-221 (353)
39 KOG0266 WD40 repeat-containing 98.1 0.00051 1.1E-08 67.7 19.5 166 94-268 237-412 (456)
40 PRK04792 tolB translocation pr 98.0 0.00043 9.3E-09 68.1 18.7 154 109-270 222-387 (448)
41 PRK05137 tolB translocation pr 98.0 0.0005 1.1E-08 66.8 18.9 156 106-269 203-370 (435)
42 KOG1446 Histone H3 (Lys4) meth 98.0 0.0012 2.6E-08 62.7 20.1 173 91-272 88-269 (311)
43 cd00216 PQQ_DH Dehydrogenases 98.0 0.00032 6.9E-09 69.8 16.2 156 110-271 57-270 (488)
44 cd00216 PQQ_DH Dehydrogenases 98.0 0.00094 2E-08 66.4 19.3 160 106-270 101-324 (488)
45 PRK04922 tolB translocation pr 97.9 0.00069 1.5E-08 65.9 17.5 157 108-270 207-373 (433)
46 PRK00178 tolB translocation pr 97.9 0.0014 3E-08 63.2 19.3 156 107-270 201-368 (430)
47 PTZ00420 coronin; Provisional 97.8 0.0049 1.1E-07 63.2 22.7 127 104-232 74-211 (568)
48 PF06433 Me-amine-dh_H: Methyl 97.8 0.0012 2.6E-08 63.7 17.2 101 127-229 16-137 (342)
49 COG4257 Vgb Streptogramin lyas 97.8 0.0004 8.8E-09 65.7 13.4 158 94-261 178-343 (353)
50 PTZ00420 coronin; Provisional 97.8 0.0045 9.7E-08 63.5 21.9 154 104-267 125-295 (568)
51 PRK02889 tolB translocation pr 97.8 0.0016 3.4E-08 63.4 17.9 156 108-270 199-365 (427)
52 TIGR02276 beta_rpt_yvtn 40-res 97.8 6.8E-05 1.5E-09 49.2 5.4 33 198-230 1-34 (42)
53 PRK04043 tolB translocation pr 97.8 0.0021 4.5E-08 63.1 17.9 151 109-269 192-361 (419)
54 KOG0266 WD40 repeat-containing 97.8 0.0036 7.8E-08 61.8 19.7 163 102-273 201-372 (456)
55 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.7 0.0018 3.9E-08 65.4 17.7 110 115-228 69-199 (527)
56 KOG0315 G-protein beta subunit 97.7 0.0015 3.3E-08 61.0 15.5 142 92-238 29-185 (311)
57 PLN00181 protein SPA1-RELATED; 97.7 0.011 2.4E-07 61.9 23.7 157 104-269 483-652 (793)
58 TIGR02800 propeller_TolB tol-p 97.7 0.0034 7.4E-08 59.5 17.8 114 108-222 237-358 (417)
59 PF03022 MRJP: Major royal jel 97.7 0.004 8.6E-08 58.3 17.8 156 107-266 3-216 (287)
60 PRK01742 tolB translocation pr 97.7 0.0052 1.1E-07 59.8 19.3 151 106-270 205-366 (429)
61 PTZ00421 coronin; Provisional 97.7 0.011 2.4E-07 59.5 21.8 124 104-229 75-209 (493)
62 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.00096 2.1E-08 67.4 13.7 114 155-270 65-194 (527)
63 COG3823 Glutamine cyclotransfe 97.6 0.0011 2.3E-08 60.7 11.6 151 93-250 78-245 (262)
64 COG1520 FOG: WD40-like repeat 97.6 0.0083 1.8E-07 57.0 18.3 153 112-270 65-222 (370)
65 COG1520 FOG: WD40-like repeat 97.5 0.01 2.2E-07 56.4 18.5 155 108-270 105-273 (370)
66 PHA02713 hypothetical protein; 97.5 0.0067 1.5E-07 61.6 18.1 154 109-268 298-492 (557)
67 KOG4499 Ca2+-binding protein R 97.5 0.00085 1.8E-08 62.4 10.2 98 108-207 161-273 (310)
68 PRK04922 tolB translocation pr 97.5 0.0072 1.6E-07 58.8 17.1 152 108-267 251-413 (433)
69 TIGR02604 Piru_Ver_Nterm putat 97.5 0.0068 1.5E-07 58.0 16.6 160 92-263 3-211 (367)
70 KOG1539 WD repeat protein [Gen 97.5 0.00095 2.1E-08 70.1 11.1 120 107-230 496-618 (910)
71 PLN00181 protein SPA1-RELATED; 97.4 0.043 9.3E-07 57.5 23.4 163 94-268 566-741 (793)
72 KOG1273 WD40 repeat protein [G 97.4 0.0073 1.6E-07 58.1 15.9 145 107-261 68-221 (405)
73 PHA02713 hypothetical protein; 97.4 0.0037 8E-08 63.5 15.0 151 109-268 346-536 (557)
74 PRK00178 tolB translocation pr 97.4 0.01 2.2E-07 57.2 17.4 113 109-222 247-367 (430)
75 PRK04792 tolB translocation pr 97.4 0.0096 2.1E-07 58.6 17.3 113 109-222 266-386 (448)
76 KOG2055 WD40 repeat protein [G 97.4 0.0018 3.8E-08 64.5 11.3 121 107-229 260-385 (514)
77 KOG0318 WD40 repeat stress pro 97.4 0.014 3E-07 59.1 17.4 123 95-228 182-318 (603)
78 KOG4441 Proteins containing BT 97.3 0.0083 1.8E-07 61.4 16.2 156 109-268 375-549 (571)
79 PHA03098 kelch-like protein; P 97.3 0.021 4.6E-07 56.8 18.7 153 109-268 337-514 (534)
80 PRK05137 tolB translocation pr 97.3 0.023 5E-07 55.3 17.9 154 108-269 249-416 (435)
81 PTZ00421 coronin; Provisional 97.3 0.018 3.8E-07 58.0 17.5 131 95-228 160-300 (493)
82 TIGR03548 mutarot_permut cycli 97.3 0.039 8.4E-07 51.4 18.6 127 94-223 54-199 (323)
83 PLN02153 epithiospecifier prot 97.3 0.032 6.9E-07 52.4 18.1 155 110-268 81-287 (341)
84 PLN02153 epithiospecifier prot 97.2 0.034 7.3E-07 52.3 18.2 156 109-268 27-228 (341)
85 PHA02790 Kelch-like protein; P 97.2 0.011 2.4E-07 58.7 15.7 152 109-269 313-474 (480)
86 KOG0278 Serine/threonine kinas 97.2 0.016 3.5E-07 54.4 15.3 141 110-261 149-293 (334)
87 KOG1446 Histone H3 (Lys4) meth 97.2 0.0099 2.1E-07 56.6 14.1 125 111-238 147-281 (311)
88 PRK03629 tolB translocation pr 97.2 0.026 5.7E-07 55.1 17.7 114 109-223 247-368 (429)
89 KOG4441 Proteins containing BT 97.2 0.021 4.6E-07 58.5 17.6 169 92-270 312-504 (571)
90 PF06977 SdiA-regulated: SdiA- 97.2 0.11 2.4E-06 48.0 20.6 157 93-252 53-239 (248)
91 TIGR02276 beta_rpt_yvtn 40-res 97.2 0.0015 3.2E-08 42.7 6.0 39 158-197 2-40 (42)
92 KOG0643 Translation initiation 97.1 0.047 1E-06 51.7 17.2 171 93-275 42-230 (327)
93 PRK04043 tolB translocation pr 97.1 0.024 5.3E-07 55.7 16.2 150 109-267 237-402 (419)
94 PF13449 Phytase-like: Esteras 97.1 0.0055 1.2E-07 57.9 11.3 111 107-220 87-253 (326)
95 PF02191 OLF: Olfactomedin-lik 97.0 0.036 7.8E-07 51.3 15.8 144 109-263 73-245 (250)
96 KOG4649 PQQ (pyrrolo-quinoline 97.0 0.041 8.9E-07 52.1 16.1 146 110-267 16-167 (354)
97 PF02191 OLF: Olfactomedin-lik 97.0 0.058 1.3E-06 49.9 17.1 151 116-270 31-208 (250)
98 PHA03098 kelch-like protein; P 97.0 0.049 1.1E-06 54.2 17.7 152 109-268 289-467 (534)
99 PF05694 SBP56: 56kDa selenium 97.0 0.011 2.3E-07 59.0 12.3 136 92-229 166-356 (461)
100 smart00284 OLF Olfactomedin-li 97.0 0.034 7.3E-07 51.9 14.9 150 116-268 35-211 (255)
101 PRK02889 tolB translocation pr 97.0 0.021 4.5E-07 55.7 14.2 119 108-228 287-412 (427)
102 TIGR03074 PQQ_membr_DH membran 97.0 0.031 6.7E-07 59.3 16.3 111 115-229 194-355 (764)
103 KOG0291 WD40-repeat-containing 96.9 0.026 5.7E-07 59.3 15.1 161 103-271 435-617 (893)
104 KOG0315 G-protein beta subunit 96.9 0.084 1.8E-06 49.6 16.8 187 74-273 93-296 (311)
105 PHA02790 Kelch-like protein; P 96.9 0.021 4.6E-07 56.8 13.9 108 109-221 357-473 (480)
106 COG3386 Gluconolactonase [Carb 96.9 0.069 1.5E-06 50.8 16.5 142 105-255 111-277 (307)
107 TIGR03032 conserved hypothetic 96.8 0.022 4.8E-07 54.7 12.9 133 88-230 135-302 (335)
108 KOG0318 WD40 repeat stress pro 96.8 0.083 1.8E-06 53.7 17.1 158 98-266 231-393 (603)
109 PF08662 eIF2A: Eukaryotic tra 96.8 0.051 1.1E-06 47.8 14.0 114 125-247 36-156 (194)
110 PF07433 DUF1513: Protein of u 96.8 0.062 1.3E-06 51.4 15.3 128 92-223 87-290 (305)
111 PRK01029 tolB translocation pr 96.8 0.1 2.2E-06 51.3 17.2 154 111-270 191-364 (428)
112 KOG0279 G protein beta subunit 96.7 0.023 5E-07 53.8 11.9 120 92-216 181-311 (315)
113 PRK01742 tolB translocation pr 96.7 0.074 1.6E-06 51.8 15.4 112 109-223 252-366 (429)
114 PLN02193 nitrile-specifier pro 96.6 0.14 3E-06 50.8 17.4 150 115-268 228-413 (470)
115 KOG0274 Cdc4 and related F-box 96.6 0.36 7.9E-06 49.4 20.3 161 101-275 206-368 (537)
116 smart00284 OLF Olfactomedin-li 96.6 0.16 3.5E-06 47.4 16.3 145 109-264 78-251 (255)
117 KOG0282 mRNA splicing factor [ 96.5 0.0039 8.5E-08 62.2 5.7 136 92-230 331-474 (503)
118 KOG0279 G protein beta subunit 96.5 0.31 6.6E-06 46.4 17.8 163 94-267 54-224 (315)
119 KOG0306 WD40-repeat-containing 96.5 0.15 3.3E-06 53.7 17.0 107 104-216 373-482 (888)
120 KOG2048 WD40 repeat protein [G 96.5 0.17 3.8E-06 52.5 17.0 127 99-229 64-195 (691)
121 TIGR03548 mutarot_permut cycli 96.4 0.23 4.9E-06 46.3 16.6 99 109-208 118-231 (323)
122 KOG0282 mRNA splicing factor [ 96.4 0.0091 2E-07 59.6 7.4 162 93-263 248-413 (503)
123 TIGR03074 PQQ_membr_DH membran 96.4 0.066 1.4E-06 56.8 14.2 113 157-270 192-349 (764)
124 COG3490 Uncharacterized protei 96.4 0.04 8.8E-07 52.7 11.2 150 94-253 59-244 (366)
125 KOG0294 WD40 repeat-containing 96.4 0.34 7.3E-06 46.8 17.2 126 91-223 115-242 (362)
126 PF02897 Peptidase_S9_N: Proly 96.4 0.81 1.8E-05 43.8 20.2 160 107-271 229-410 (414)
127 PF13449 Phytase-like: Esteras 96.3 0.18 3.9E-06 47.7 15.5 113 152-266 87-252 (326)
128 COG3204 Uncharacterized protei 96.3 0.56 1.2E-05 44.9 18.3 157 105-265 86-263 (316)
129 KOG1407 WD40 repeat protein [F 96.2 0.18 3.9E-06 47.7 14.3 151 109-269 111-265 (313)
130 KOG0289 mRNA splicing factor [ 96.1 0.061 1.3E-06 53.6 11.3 108 108-220 351-464 (506)
131 KOG0296 Angio-associated migra 96.1 0.43 9.2E-06 46.8 16.5 129 95-230 98-232 (399)
132 COG0823 TolB Periplasmic compo 96.0 0.11 2.4E-06 51.5 12.7 131 126-268 215-361 (425)
133 KOG0278 Serine/threonine kinas 96.0 0.083 1.8E-06 49.8 10.9 139 92-238 174-320 (334)
134 KOG0271 Notchless-like WD40 re 95.9 0.22 4.8E-06 49.2 14.0 116 108-226 119-243 (480)
135 PF08662 eIF2A: Eukaryotic tra 95.9 0.2 4.4E-06 44.0 12.7 96 107-207 62-162 (194)
136 PF03022 MRJP: Major royal jel 95.9 0.39 8.4E-06 45.0 15.3 154 92-252 43-253 (287)
137 PRK01029 tolB translocation pr 95.9 0.24 5.2E-06 48.6 14.4 115 109-223 285-408 (428)
138 PLN02193 nitrile-specifier pro 95.9 0.83 1.8E-05 45.4 18.3 155 109-268 170-354 (470)
139 PF02897 Peptidase_S9_N: Proly 95.9 0.73 1.6E-05 44.1 17.4 154 109-268 128-312 (414)
140 KOG0973 Histone transcription 95.9 0.19 4.1E-06 54.3 14.2 138 85-226 111-261 (942)
141 PF07995 GSDH: Glucose / Sorbo 95.8 0.58 1.3E-05 44.4 16.2 36 92-127 99-136 (331)
142 COG3490 Uncharacterized protei 95.7 0.2 4.4E-06 48.0 12.6 91 136-228 56-159 (366)
143 KOG0291 WD40-repeat-containing 95.7 0.64 1.4E-05 49.3 17.0 134 95-237 343-483 (893)
144 KOG1407 WD40 repeat protein [F 95.7 0.54 1.2E-05 44.5 15.0 131 105-244 21-156 (313)
145 TIGR03547 muta_rot_YjhT mutatr 95.7 0.94 2E-05 42.4 16.9 95 112-208 15-126 (346)
146 PF05935 Arylsulfotrans: Aryls 95.7 0.34 7.4E-06 48.5 14.7 74 195-270 196-306 (477)
147 TIGR03118 PEPCTERM_chp_1 conse 95.6 0.69 1.5E-05 44.6 15.7 121 149-274 139-287 (336)
148 TIGR03547 muta_rot_YjhT mutatr 95.6 0.25 5.3E-06 46.3 12.7 81 128-208 168-265 (346)
149 KOG0295 WD40 repeat-containing 95.4 0.3 6.5E-06 47.8 12.5 148 94-250 226-391 (406)
150 KOG0293 WD40 repeat-containing 95.4 0.26 5.7E-06 49.1 12.2 176 91-275 299-479 (519)
151 KOG0288 WD40 repeat protein Ti 95.4 0.22 4.9E-06 49.3 11.7 118 122-244 317-440 (459)
152 PRK14131 N-acetylneuraminic ac 95.4 0.55 1.2E-05 45.0 14.4 140 128-271 189-374 (376)
153 KOG0275 Conserved WD40 repeat- 95.3 0.19 4E-06 48.9 10.8 135 92-230 337-479 (508)
154 KOG2055 WD40 repeat protein [G 95.3 1.9 4.1E-05 43.6 17.8 172 88-267 195-376 (514)
155 KOG0273 Beta-transducin family 95.2 0.56 1.2E-05 47.3 14.2 153 104-265 359-523 (524)
156 TIGR02604 Piru_Ver_Nterm putat 95.2 0.5 1.1E-05 45.2 13.7 116 151-269 15-176 (367)
157 KOG2106 Uncharacterized conser 95.2 1.6 3.5E-05 44.6 17.4 149 100-266 285-437 (626)
158 KOG0285 Pleiotropic regulator 95.1 0.79 1.7E-05 45.1 14.6 158 103-270 150-312 (460)
159 KOG0286 G-protein beta subunit 95.1 3.4 7.3E-05 39.8 19.4 173 92-273 86-267 (343)
160 KOG0310 Conserved WD40 repeat- 95.0 0.48 1E-05 47.7 13.1 158 103-272 69-232 (487)
161 KOG0310 Conserved WD40 repeat- 95.0 2.1 4.6E-05 43.2 17.5 110 105-220 111-227 (487)
162 KOG0276 Vesicle coat complex C 95.0 0.33 7E-06 50.6 12.1 112 104-231 351-465 (794)
163 PF13970 DUF4221: Domain of un 95.0 0.51 1.1E-05 44.6 12.7 110 162-272 58-193 (333)
164 KOG4499 Ca2+-binding protein R 94.9 0.17 3.6E-06 47.5 9.0 76 88-167 196-274 (310)
165 COG5276 Uncharacterized conser 94.9 3.3 7.1E-05 40.1 17.7 147 108-267 90-243 (370)
166 KOG2919 Guanine nucleotide-bin 94.9 0.13 2.9E-06 49.8 8.5 129 86-217 31-186 (406)
167 KOG0646 WD40 repeat protein [G 94.8 0.17 3.6E-06 50.6 9.2 109 116-228 189-317 (476)
168 PF14269 Arylsulfotran_2: Aryl 94.8 0.61 1.3E-05 44.1 12.6 61 209-270 95-178 (299)
169 PRK14131 N-acetylneuraminic ac 94.7 2.6 5.7E-05 40.4 17.1 93 115-208 38-147 (376)
170 KOG0303 Actin-binding protein 94.7 1 2.2E-05 44.8 14.0 120 111-236 88-221 (472)
171 KOG0649 WD40 repeat protein [G 94.6 2.7 5.8E-05 39.8 16.1 115 108-228 118-245 (325)
172 KOG0319 WD40-repeat-containing 94.6 0.45 9.8E-06 50.0 12.2 163 104-270 105-273 (775)
173 KOG0263 Transcription initiati 94.6 1.1 2.4E-05 47.1 14.9 159 98-266 447-650 (707)
174 PF09826 Beta_propel: Beta pro 94.6 1.6 3.5E-05 44.5 15.9 136 90-229 182-369 (521)
175 PF09826 Beta_propel: Beta pro 94.5 5.2 0.00011 40.8 19.2 143 126-275 302-482 (521)
176 KOG2110 Uncharacterized conser 94.4 1.9 4.2E-05 42.3 15.3 132 128-269 68-208 (391)
177 KOG0293 WD40 repeat-containing 94.3 0.25 5.4E-06 49.3 9.0 150 108-268 273-428 (519)
178 KOG1036 Mitotic spindle checkp 94.2 1.6 3.4E-05 42.0 13.8 124 107-244 97-241 (323)
179 KOG0265 U5 snRNP-specific prot 94.2 0.51 1.1E-05 45.3 10.5 113 104-222 90-208 (338)
180 KOG3545 Olfactomedin and relat 94.1 1.2 2.6E-05 41.6 12.6 150 116-269 31-206 (249)
181 KOG2111 Uncharacterized conser 94.0 4.1 8.8E-05 39.5 16.2 136 123-269 70-216 (346)
182 TIGR03118 PEPCTERM_chp_1 conse 93.6 2.4 5.2E-05 41.0 13.9 128 104-235 137-295 (336)
183 KOG0274 Cdc4 and related F-box 93.4 8.3 0.00018 39.6 18.5 151 101-267 248-402 (537)
184 PF03178 CPSF_A: CPSF A subuni 93.3 5.3 0.00012 37.1 15.8 120 127-252 1-146 (321)
185 KOG3881 Uncharacterized conser 93.3 0.62 1.3E-05 45.9 9.7 122 105-230 203-332 (412)
186 KOG2695 WD40 repeat protein [G 93.2 0.35 7.5E-06 47.3 7.8 127 120-262 228-372 (425)
187 KOG0286 G-protein beta subunit 93.1 8.8 0.00019 37.0 17.1 167 91-269 133-307 (343)
188 KOG0271 Notchless-like WD40 re 93.1 0.75 1.6E-05 45.6 9.8 121 103-226 156-284 (480)
189 COG2133 Glucose/sorbosone dehy 93.1 2.8 6.1E-05 41.6 14.0 33 93-125 165-197 (399)
190 PF02333 Phytase: Phytase; In 93.0 3.1 6.6E-05 41.1 14.1 120 107-230 158-303 (381)
191 KOG0643 Translation initiation 93.0 8.8 0.00019 36.7 17.7 152 110-271 16-183 (327)
192 KOG4532 WD40-like repeat conta 93.0 2.3 5E-05 40.6 12.6 121 109-232 163-296 (344)
193 KOG0639 Transducin-like enhanc 92.8 0.32 7E-06 49.6 7.1 142 103-255 464-612 (705)
194 KOG1539 WD repeat protein [Gen 92.8 2.9 6.3E-05 44.9 14.3 138 125-270 467-611 (910)
195 PF14583 Pectate_lyase22: Olig 92.7 3.3 7.2E-05 41.0 13.9 132 93-228 21-186 (386)
196 KOG4378 Nuclear protein COP1 [ 92.7 1.4 3.1E-05 45.0 11.3 118 99-220 159-282 (673)
197 KOG0281 Beta-TrCP (transducin 92.6 1.2 2.5E-05 44.0 10.4 148 107-268 240-391 (499)
198 KOG0303 Actin-binding protein 92.6 3.3 7.1E-05 41.3 13.5 105 111-222 138-253 (472)
199 PF05694 SBP56: 56kDa selenium 92.6 4.5 9.7E-05 40.8 14.7 148 114-266 139-343 (461)
200 TIGR03606 non_repeat_PQQ dehyd 92.5 3.4 7.4E-05 41.6 14.0 74 87-166 16-103 (454)
201 KOG0272 U4/U6 small nuclear ri 92.5 1.4 3.1E-05 43.9 11.0 122 100-229 301-429 (459)
202 PF03178 CPSF_A: CPSF A subuni 92.5 8.7 0.00019 35.7 15.9 118 91-216 77-200 (321)
203 KOG0319 WD40-repeat-containing 92.2 2.7 5.8E-05 44.5 13.0 156 92-260 223-390 (775)
204 KOG3881 Uncharacterized conser 92.1 5 0.00011 39.8 14.1 135 127-266 172-321 (412)
205 PF13970 DUF4221: Domain of un 92.0 6.3 0.00014 37.2 14.4 135 127-268 66-244 (333)
206 KOG2096 WD40 repeat protein [G 91.9 4.4 9.6E-05 39.6 13.2 143 107-264 89-257 (420)
207 KOG0296 Angio-associated migra 91.9 14 0.0003 36.5 18.9 159 100-271 62-226 (399)
208 PF03088 Str_synth: Strictosid 91.8 0.33 7.1E-06 38.4 4.7 45 169-215 36-84 (89)
209 COG3204 Uncharacterized protei 91.7 6.7 0.00014 37.8 14.1 155 92-251 116-300 (316)
210 TIGR03032 conserved hypothetic 91.4 1.7 3.6E-05 42.2 9.9 57 105-166 203-259 (335)
211 KOG0285 Pleiotropic regulator 91.4 8.9 0.00019 38.0 14.9 117 106-225 237-355 (460)
212 KOG0646 WD40 repeat protein [G 91.4 4.3 9.4E-05 40.9 13.0 153 108-267 127-309 (476)
213 KOG2106 Uncharacterized conser 91.4 8 0.00017 39.8 14.9 130 100-244 366-500 (626)
214 KOG0306 WD40-repeat-containing 91.3 4.1 8.9E-05 43.4 13.2 105 104-215 107-218 (888)
215 COG0823 TolB Periplasmic compo 91.1 6.2 0.00013 39.2 13.9 138 125-270 170-319 (425)
216 KOG0316 Conserved WD40 repeat- 91.1 4.1 8.9E-05 38.4 11.7 109 108-219 21-132 (307)
217 KOG0308 Conserved WD40 repeat- 90.9 5.6 0.00012 41.8 13.6 147 103-255 170-319 (735)
218 KOG0289 mRNA splicing factor [ 90.9 14 0.00031 37.3 15.9 139 98-244 299-441 (506)
219 KOG1274 WD40 repeat protein [G 90.8 12 0.00027 40.6 16.4 160 96-268 7-171 (933)
220 KOG2919 Guanine nucleotide-bin 90.8 2.6 5.7E-05 41.1 10.5 150 103-266 159-328 (406)
221 KOG1036 Mitotic spindle checkp 90.6 14 0.00031 35.7 15.1 117 95-222 47-167 (323)
222 PF14583 Pectate_lyase22: Olig 90.5 1.5 3.2E-05 43.4 8.8 102 160-273 4-118 (386)
223 KOG0295 WD40 repeat-containing 90.4 1.3 2.8E-05 43.5 8.1 62 103-167 333-394 (406)
224 PF00400 WD40: WD domain, G-be 90.3 1.3 2.9E-05 27.7 5.8 38 94-134 2-39 (39)
225 KOG0305 Anaphase promoting com 90.3 7.2 0.00016 39.7 13.7 120 107-229 304-430 (484)
226 KOG4378 Nuclear protein COP1 [ 89.8 13 0.00029 38.2 14.9 174 93-276 110-291 (673)
227 KOG0771 Prolactin regulatory e 89.5 1.9 4E-05 42.7 8.5 149 104-262 186-351 (398)
228 PF13570 PQQ_3: PQQ-like domai 89.5 0.87 1.9E-05 29.8 4.4 38 140-179 3-40 (40)
229 KOG0379 Kelch repeat-containin 89.5 7 0.00015 39.3 12.9 138 129-268 89-252 (482)
230 KOG0275 Conserved WD40 repeat- 89.3 5.2 0.00011 39.2 11.3 122 104-230 303-434 (508)
231 KOG1520 Predicted alkaloid syn 89.1 4.2 9.1E-05 40.1 10.6 60 190-250 116-176 (376)
232 PF14298 DUF4374: Domain of un 89.0 8.5 0.00018 38.7 12.9 61 167-228 364-434 (435)
233 PF13570 PQQ_3: PQQ-like domai 88.9 1.4 3E-05 28.8 5.1 37 182-219 3-40 (40)
234 KOG2110 Uncharacterized conser 88.8 19 0.00041 35.6 14.7 140 116-263 98-246 (391)
235 KOG0272 U4/U6 small nuclear ri 88.8 4.3 9.3E-05 40.6 10.5 128 96-228 254-385 (459)
236 KOG0301 Phospholipase A2-activ 88.8 9.7 0.00021 40.3 13.4 115 94-216 170-288 (745)
237 KOG0772 Uncharacterized conser 88.7 2.7 5.9E-05 43.1 9.2 115 100-218 360-488 (641)
238 KOG0263 Transcription initiati 88.6 4.4 9.6E-05 42.8 11.0 108 109-219 540-650 (707)
239 KOG0283 WD40 repeat-containing 88.4 16 0.00034 38.9 14.9 152 108-266 373-533 (712)
240 KOG0772 Uncharacterized conser 88.2 1 2.3E-05 46.0 6.0 135 92-229 304-456 (641)
241 KOG0308 Conserved WD40 repeat- 88.1 11 0.00024 39.7 13.3 125 103-232 116-257 (735)
242 KOG2321 WD40 repeat protein [G 88.0 9.7 0.00021 39.7 12.7 175 91-269 40-262 (703)
243 KOG1274 WD40 repeat protein [G 87.7 21 0.00047 38.8 15.5 151 108-266 100-263 (933)
244 KOG0316 Conserved WD40 repeat- 87.7 5.7 0.00012 37.4 10.0 131 91-225 89-220 (307)
245 KOG0639 Transducin-like enhanc 87.6 2.7 6E-05 43.1 8.5 165 94-270 411-586 (705)
246 PLN02258 9-cis-epoxycarotenoid 87.5 17 0.00037 37.8 14.5 104 81-189 119-279 (590)
247 TIGR03606 non_repeat_PQQ dehyd 87.1 3.9 8.5E-05 41.2 9.3 33 94-126 135-167 (454)
248 KOG0640 mRNA cleavage stimulat 87.1 4.4 9.5E-05 39.5 9.1 113 108-225 220-342 (430)
249 KOG0283 WD40 repeat-containing 87.0 10 0.00022 40.4 12.5 130 93-227 400-541 (712)
250 COG4946 Uncharacterized protei 87.0 8.8 0.00019 39.4 11.6 63 161-223 373-436 (668)
251 KOG1520 Predicted alkaloid syn 86.9 3.4 7.3E-05 40.7 8.5 104 107-215 117-246 (376)
252 KOG0307 Vesicle coat complex C 86.7 1.5 3.2E-05 48.1 6.4 173 91-275 104-293 (1049)
253 KOG0305 Anaphase promoting com 86.4 12 0.00027 38.1 12.4 114 104-219 343-462 (484)
254 PF01731 Arylesterase: Arylest 86.2 2.1 4.5E-05 33.6 5.5 47 170-218 36-84 (86)
255 KOG3545 Olfactomedin and relat 86.2 11 0.00024 35.3 11.0 119 96-222 61-206 (249)
256 PF04053 Coatomer_WDAD: Coatom 86.1 5.3 0.00011 40.0 9.6 112 103-229 31-145 (443)
257 KOG4547 WD40 repeat-containing 85.9 37 0.0008 35.1 15.5 139 126-271 13-178 (541)
258 KOG0379 Kelch repeat-containin 85.6 19 0.00042 36.1 13.4 107 116-223 123-254 (482)
259 KOG3914 WD repeat protein WDR4 85.1 0.61 1.3E-05 45.9 2.4 49 94-145 184-232 (390)
260 PF02333 Phytase: Phytase; In 85.0 43 0.00092 33.2 19.5 139 127-266 126-291 (381)
261 PF00930 DPPIV_N: Dipeptidyl p 85.0 31 0.00066 32.7 13.9 136 128-268 158-319 (353)
262 PF05935 Arylsulfotrans: Aryls 84.8 11 0.00023 37.9 11.2 104 159-270 113-236 (477)
263 COG2319 FOG: WD40 repeat [Gene 84.3 26 0.00056 30.2 20.6 157 103-268 154-317 (466)
264 PF07250 Glyoxal_oxid_N: Glyox 84.3 7.6 0.00016 36.0 9.1 131 98-230 60-209 (243)
265 KOG0281 Beta-TrCP (transducin 84.3 5.9 0.00013 39.2 8.6 149 108-266 324-478 (499)
266 COG2319 FOG: WD40 repeat [Gene 83.7 28 0.0006 30.0 18.3 159 104-269 65-233 (466)
267 KOG0284 Polyadenylation factor 83.5 3.5 7.6E-05 41.2 6.9 118 105-225 181-301 (464)
268 KOG2139 WD40 repeat protein [G 83.5 17 0.00037 36.1 11.4 107 103-215 194-308 (445)
269 KOG1272 WD40-repeat-containing 83.5 2.2 4.7E-05 43.2 5.5 115 109-228 214-333 (545)
270 KOG0277 Peroxisomal targeting 83.2 44 0.00095 31.9 15.0 170 92-275 50-231 (311)
271 KOG0292 Vesicle coat complex C 82.7 18 0.0004 39.6 12.1 121 95-222 43-169 (1202)
272 KOG3522 Predicted guanine nucl 82.7 1.6 3.6E-05 46.8 4.5 159 97-271 574-745 (925)
273 KOG4328 WD40 protein [Function 82.7 13 0.00027 37.8 10.4 161 106-272 281-457 (498)
274 PF07995 GSDH: Glucose / Sorbo 82.6 16 0.00034 34.7 10.8 95 109-208 6-132 (331)
275 KOG1445 Tumor-specific antigen 82.5 6.2 0.00013 41.7 8.4 110 101-216 719-842 (1012)
276 PF03088 Str_synth: Strictosid 82.5 9.8 0.00021 30.0 7.8 65 109-175 2-84 (89)
277 KOG0268 Sof1-like rRNA process 81.9 14 0.00029 36.7 10.1 138 83-230 86-230 (433)
278 PF01436 NHL: NHL repeat; Int 81.0 4.2 9.1E-05 24.9 4.2 26 106-133 3-28 (28)
279 KOG1538 Uncharacterized conser 81.0 23 0.0005 37.9 11.9 35 107-145 15-50 (1081)
280 COG3292 Predicted periplasmic 80.8 2.9 6.3E-05 43.5 5.3 71 100-179 160-234 (671)
281 PF01436 NHL: NHL repeat; Int 80.7 4.2 9.2E-05 24.9 4.2 25 151-175 3-28 (28)
282 PF08553 VID27: VID27 cytoplas 80.5 58 0.0012 35.3 15.0 146 110-265 487-647 (794)
283 COG5276 Uncharacterized conser 80.1 62 0.0013 31.6 17.0 122 92-221 118-244 (370)
284 KOG0321 WD40 repeat-containing 80.1 17 0.00036 38.4 10.5 168 95-269 93-305 (720)
285 KOG0973 Histone transcription 80.1 15 0.00032 40.3 10.5 163 107-273 72-261 (942)
286 KOG0294 WD40 repeat-containing 79.5 42 0.00091 32.8 12.4 128 91-224 29-163 (362)
287 KOG3914 WD repeat protein WDR4 79.4 4.4 9.6E-05 40.0 5.9 80 107-188 154-233 (390)
288 KOG4227 WD40 repeat protein [G 79.4 12 0.00026 37.6 8.9 110 107-219 59-180 (609)
289 COG4946 Uncharacterized protei 78.4 22 0.00047 36.6 10.5 99 124-223 378-482 (668)
290 KOG4532 WD40-like repeat conta 77.8 69 0.0015 30.9 14.4 158 104-275 67-243 (344)
291 KOG0292 Vesicle coat complex C 77.7 1.2E+02 0.0026 33.7 16.6 36 107-144 253-288 (1202)
292 PF08309 LVIVD: LVIVD repeat; 77.6 8.2 0.00018 26.3 5.2 35 192-226 3-40 (42)
293 KOG0302 Ribosome Assembly prot 77.4 14 0.00031 36.8 8.7 111 104-219 257-379 (440)
294 KOG1963 WD40 repeat protein [G 77.0 41 0.0009 36.3 12.6 122 104-230 251-387 (792)
295 KOG0267 Microtubule severing p 76.9 3.7 8.1E-05 43.5 4.8 95 109-208 159-258 (825)
296 COG1499 NMD3 NMD protein affec 76.6 54 0.0012 32.2 12.5 95 128-223 222-326 (355)
297 KOG0313 Microtubule binding pr 76.4 50 0.0011 33.0 12.1 111 105-221 261-379 (423)
298 KOG1214 Nidogen and related ba 76.2 31 0.00067 37.8 11.3 159 107-273 1070-1234(1289)
299 COG4880 Secreted protein conta 75.9 44 0.00095 34.2 11.7 47 158-207 110-156 (603)
300 KOG4547 WD40 repeat-containing 75.5 51 0.0011 34.1 12.4 99 126-226 78-180 (541)
301 KOG0321 WD40 repeat-containing 75.5 21 0.00046 37.6 9.7 107 103-216 214-347 (720)
302 KOG0647 mRNA export protein (c 75.3 59 0.0013 31.7 12.0 112 101-219 71-185 (347)
303 KOG1273 WD40 repeat protein [G 75.2 89 0.0019 30.8 13.3 160 94-270 16-188 (405)
304 PRK10115 protease 2; Provision 74.3 37 0.0008 35.8 11.5 109 107-217 129-254 (686)
305 KOG0918 Selenium-binding prote 74.1 7.6 0.00016 38.9 6.0 90 110-207 317-407 (476)
306 KOG2321 WD40 repeat protein [G 74.0 30 0.00064 36.3 10.2 127 117-252 188-332 (703)
307 KOG0267 Microtubule severing p 73.5 4.9 0.00011 42.7 4.7 120 106-229 72-237 (825)
308 KOG1009 Chromatin assembly com 73.3 38 0.00083 33.9 10.5 128 96-226 6-161 (434)
309 KOG4649 PQQ (pyrrolo-quinoline 72.4 48 0.001 31.9 10.6 103 160-268 23-126 (354)
310 PF13964 Kelch_6: Kelch motif 72.3 7.6 0.00016 26.2 4.0 38 109-147 6-47 (50)
311 KOG2111 Uncharacterized conser 72.0 44 0.00095 32.6 10.4 99 118-217 150-255 (346)
312 PF00780 CNH: CNH domain; Int 71.7 74 0.0016 28.3 17.1 125 94-229 130-266 (275)
313 KOG1275 PAB-dependent poly(A) 71.5 16 0.00034 40.1 8.0 69 162-230 149-217 (1118)
314 KOG2315 Predicted translation 71.3 25 0.00055 36.3 9.0 129 94-228 23-165 (566)
315 PF01011 PQQ: PQQ enzyme repea 71.1 11 0.00025 24.3 4.5 29 160-189 1-29 (38)
316 KOG2096 WD40 repeat protein [G 70.9 44 0.00096 32.9 10.1 102 109-217 137-257 (420)
317 COG2133 Glucose/sorbosone dehy 70.1 48 0.001 33.1 10.5 54 154-210 135-197 (399)
318 KOG0647 mRNA export protein (c 69.3 1.2E+02 0.0025 29.7 14.0 166 92-266 103-282 (347)
319 smart00564 PQQ beta-propeller 69.2 9 0.0002 23.3 3.6 25 200-224 6-30 (33)
320 KOG1275 PAB-dependent poly(A) 69.2 24 0.00052 38.8 8.7 100 126-230 155-266 (1118)
321 PF14269 Arylsulfotran_2: Aryl 68.9 1.1E+02 0.0023 29.0 19.0 141 125-273 93-296 (299)
322 KOG2395 Protein involved in va 68.8 87 0.0019 32.8 12.2 136 118-265 348-500 (644)
323 KOG0273 Beta-transducin family 68.7 1.5E+02 0.0032 30.6 17.7 153 108-269 280-444 (524)
324 KOG1517 Guanine nucleotide bin 68.6 38 0.00082 38.0 10.1 112 105-219 1164-1288(1387)
325 KOG0284 Polyadenylation factor 68.4 32 0.00069 34.6 8.8 146 107-266 141-295 (464)
326 KOG0299 U3 snoRNP-associated p 67.9 28 0.00061 35.3 8.4 113 99-216 139-272 (479)
327 PF14339 DUF4394: Domain of un 67.9 1E+02 0.0023 28.6 17.2 157 107-270 29-218 (236)
328 KOG0771 Prolactin regulatory e 66.8 1.4E+02 0.003 29.9 12.8 74 109-186 149-223 (398)
329 KOG4283 Transcription-coupled 66.7 1.3E+02 0.0029 29.4 15.8 163 100-267 41-233 (397)
330 KOG4693 Uncharacterized conser 66.6 70 0.0015 31.0 10.4 119 148-267 77-226 (392)
331 KOG1445 Tumor-specific antigen 66.5 64 0.0014 34.5 10.9 126 106-243 130-261 (1012)
332 TIGR01640 F_box_assoc_1 F-box 66.5 90 0.002 27.3 13.7 109 109-219 98-229 (230)
333 KOG1188 WD40 repeat protein [G 65.4 17 0.00037 35.6 6.2 71 161-231 41-115 (376)
334 KOG0268 Sof1-like rRNA process 65.2 61 0.0013 32.3 9.9 132 126-268 87-221 (433)
335 COG4246 Uncharacterized protei 64.8 1.4E+02 0.003 28.8 12.9 56 54-114 5-62 (340)
336 KOG4328 WD40 protein [Function 64.1 81 0.0017 32.2 10.7 129 106-243 324-474 (498)
337 KOG3522 Predicted guanine nucl 63.0 1E+02 0.0022 33.8 11.8 124 108-237 630-758 (925)
338 KOG0313 Microtubule binding pr 62.6 1.6E+02 0.0034 29.6 12.2 110 103-215 300-415 (423)
339 PF05262 Borrelia_P83: Borreli 62.1 51 0.0011 33.8 9.2 104 109-223 364-476 (489)
340 KOG0264 Nucleosome remodeling 61.9 49 0.0011 33.3 8.7 114 104-219 227-348 (422)
341 PF08553 VID27: VID27 cytoplas 61.4 22 0.00047 38.5 6.7 66 201-268 493-563 (794)
342 KOG0264 Nucleosome remodeling 60.9 1.1E+02 0.0025 30.7 11.1 155 101-265 176-347 (422)
343 KOG2394 WD40 protein DMR-N9 [G 60.8 14 0.00031 38.2 4.9 73 108-185 294-369 (636)
344 KOG0299 U3 snoRNP-associated p 60.6 2E+02 0.0044 29.4 14.9 138 108-255 290-447 (479)
345 KOG0288 WD40 repeat protein Ti 60.3 1.6E+02 0.0035 29.8 12.0 69 160-228 312-381 (459)
346 smart00135 LY Low-density lipo 59.9 26 0.00056 21.9 4.6 29 190-218 10-39 (43)
347 KOG1645 RING-finger-containing 59.6 28 0.00061 35.0 6.6 75 102-178 191-266 (463)
348 KOG2048 WD40 repeat protein [G 58.5 2.6E+02 0.0056 29.9 19.7 117 108-230 29-152 (691)
349 PF05787 DUF839: Bacterial pro 58.1 79 0.0017 32.4 9.9 21 190-210 437-457 (524)
350 PRK11486 flagellar biosynthesi 57.9 32 0.00069 29.0 5.8 74 57-134 21-94 (124)
351 COG5167 VID27 Protein involved 57.8 2.5E+02 0.0055 29.6 13.3 134 110-265 472-632 (776)
352 KOG2315 Predicted translation 57.6 1.5E+02 0.0033 30.9 11.6 105 104-214 270-380 (566)
353 KOG0290 Conserved WD40 repeat- 57.1 1.8E+02 0.0039 28.4 11.3 118 98-220 192-320 (364)
354 PF01011 PQQ: PQQ enzyme repea 56.7 31 0.00067 22.2 4.5 32 116-150 1-32 (38)
355 KOG1408 WD40 repeat protein [F 56.0 56 0.0012 35.4 8.4 155 104-269 501-675 (1080)
356 PF01731 Arylesterase: Arylest 55.8 39 0.00085 26.4 5.7 49 126-178 34-84 (86)
357 PF15416 DUF4623: Domain of un 55.7 2.2E+02 0.0049 28.3 12.3 173 87-266 116-320 (442)
358 smart00612 Kelch Kelch domain. 55.5 29 0.00062 21.9 4.3 41 118-158 2-45 (47)
359 KOG0650 WD40 repeat nucleolar 54.9 57 0.0012 34.5 8.1 75 104-180 400-474 (733)
360 KOG1538 Uncharacterized conser 52.2 50 0.0011 35.5 7.3 73 193-273 17-90 (1081)
361 KOG0649 WD40 repeat protein [G 51.3 2.3E+02 0.005 27.2 12.1 94 92-189 145-246 (325)
362 PF14779 BBS1: Ciliary BBSome 51.1 67 0.0014 30.2 7.4 58 201-262 196-255 (257)
363 KOG0290 Conserved WD40 repeat- 50.9 1.9E+02 0.0042 28.2 10.5 160 108-274 100-283 (364)
364 PF09910 DUF2139: Uncharacteri 50.8 2.5E+02 0.0054 27.5 12.8 139 127-269 77-234 (339)
365 KOG1920 IkappaB kinase complex 50.7 86 0.0019 35.5 9.1 88 95-187 59-147 (1265)
366 KOG0322 G-protein beta subunit 50.4 30 0.00066 33.1 5.0 70 104-176 251-321 (323)
367 PF08596 Lgl_C: Lethal giant l 50.4 1.6E+02 0.0035 29.1 10.3 81 126-207 233-325 (395)
368 KOG1009 Chromatin assembly com 50.1 2.5E+02 0.0055 28.3 11.4 134 91-227 53-204 (434)
369 PF11178 DUF2963: Protein of u 49.9 26 0.00057 24.8 3.5 36 211-247 10-45 (51)
370 PF03055 RPE65: Retinal pigmen 49.8 1E+02 0.0022 30.7 9.0 26 127-153 396-421 (486)
371 PF01344 Kelch_1: Kelch motif; 49.7 55 0.0012 21.2 5.0 37 109-146 6-46 (47)
372 TIGR03054 photo_alph_chp1 puta 49.4 24 0.00051 30.1 3.8 68 202-270 42-118 (135)
373 KOG0650 WD40 repeat nucleolar 49.1 96 0.0021 32.9 8.7 117 97-219 516-638 (733)
374 COG4880 Secreted protein conta 49.1 99 0.0021 31.7 8.6 61 209-274 405-468 (603)
375 PF08309 LVIVD: LVIVD repeat; 48.6 81 0.0018 21.4 5.7 35 151-186 3-40 (42)
376 PF03055 RPE65: Retinal pigmen 48.4 41 0.00089 33.6 6.0 134 89-228 13-212 (486)
377 KOG4497 Uncharacterized conser 47.9 44 0.00096 33.1 5.8 107 111-222 15-126 (447)
378 KOG1310 WD40 repeat protein [G 47.8 85 0.0018 33.1 8.0 77 104-182 50-129 (758)
379 KOG4227 WD40 repeat protein [G 46.9 1.5E+02 0.0032 30.2 9.3 81 96-181 99-182 (609)
380 PF10395 Utp8: Utp8 family; I 45.5 2.3E+02 0.0049 30.4 10.9 60 155-217 238-304 (670)
381 KOG4659 Uncharacterized conser 44.3 6E+02 0.013 29.9 15.1 63 109-176 369-435 (1899)
382 PF04053 Coatomer_WDAD: Coatom 43.7 3.1E+02 0.0067 27.6 11.3 95 127-228 88-197 (443)
383 PF05567 Neisseria_PilC: Neiss 42.8 66 0.0014 30.9 6.2 50 169-219 180-240 (335)
384 PTZ00486 apyrase Superfamily; 42.4 3.5E+02 0.0076 26.7 16.3 30 156-185 121-150 (352)
385 PF00780 CNH: CNH domain; Int 42.3 2.5E+02 0.0053 24.9 16.6 136 115-269 7-169 (275)
386 COG4447 Uncharacterized protei 42.3 1.2E+02 0.0026 29.4 7.7 53 192-244 97-179 (339)
387 PF05262 Borrelia_P83: Borreli 42.2 1.2E+02 0.0026 31.2 8.1 71 154-229 364-439 (489)
388 COG1505 Serine proteases of th 42.2 2.9E+02 0.0063 29.4 11.0 100 135-236 282-408 (648)
389 smart00320 WD40 WD40 repeats. 40.7 60 0.0013 17.4 5.0 28 105-134 13-40 (40)
390 KOG2314 Translation initiation 40.4 3.4E+02 0.0074 28.7 11.0 132 93-227 241-390 (698)
391 KOG0307 Vesicle coat complex C 40.3 32 0.00069 38.2 3.9 77 101-181 252-330 (1049)
392 TIGR02588 conserved hypothetic 39.9 52 0.0011 27.7 4.3 56 54-115 5-60 (122)
393 PF05787 DUF839: Bacterial pro 39.7 77 0.0017 32.5 6.4 35 172-206 482-519 (524)
394 KOG1408 WD40 repeat protein [F 39.4 1.7E+02 0.0036 32.0 8.8 108 109-218 601-713 (1080)
395 KOG0918 Selenium-binding prote 39.1 1.7E+02 0.0036 29.7 8.4 84 155-252 319-407 (476)
396 PRK02290 3-dehydroquinate synt 38.7 3.5E+02 0.0075 26.7 10.4 139 132-274 164-326 (344)
397 PF12435 DUF3678: Protein of u 38.5 13 0.00028 25.1 0.5 11 33-43 16-26 (38)
398 PF08268 FBA_3: F-box associat 37.9 2E+02 0.0043 23.0 7.5 36 109-147 1-38 (129)
399 cd01262 PH_PDK1 3-Phosphoinosi 37.8 76 0.0017 25.3 4.8 35 195-230 12-46 (89)
400 KOG2139 WD40 repeat protein [G 37.4 2.4E+02 0.0052 28.4 9.0 36 197-232 204-240 (445)
401 PF13418 Kelch_4: Galactose ox 37.1 85 0.0018 20.7 4.4 34 109-142 6-43 (49)
402 KOG1332 Vesicle coat complex C 37.1 70 0.0015 30.5 5.2 97 118-218 177-286 (299)
403 KOG1517 Guanine nucleotide bin 37.0 6.4E+02 0.014 29.0 12.9 117 110-230 1070-1207(1387)
404 COG4222 Uncharacterized protei 37.0 2.1E+02 0.0046 28.5 8.8 126 91-219 114-284 (391)
405 PF13806 Rieske_2: Rieske-like 36.8 91 0.002 24.8 5.2 63 96-164 40-103 (104)
406 PF04841 Vps16_N: Vps16, N-ter 36.5 4.2E+02 0.0092 26.0 15.0 41 92-136 69-109 (410)
407 KOG4497 Uncharacterized conser 36.3 2.8E+02 0.0061 27.6 9.3 95 109-205 53-150 (447)
408 KOG1897 Damage-specific DNA bi 36.1 6.8E+02 0.015 28.3 13.6 117 93-219 344-471 (1096)
409 PRK10115 protease 2; Provision 36.0 5.5E+02 0.012 27.1 21.1 183 78-267 140-348 (686)
410 COG4993 Gcd Glucose dehydrogen 35.9 2E+02 0.0044 30.8 8.7 70 158-228 213-300 (773)
411 PF05567 Neisseria_PilC: Neiss 35.7 1.5E+02 0.0034 28.4 7.5 54 208-266 179-240 (335)
412 KOG1898 Splicing factor 3b, su 35.6 3.6E+02 0.0078 30.6 10.8 122 87-215 911-1045(1205)
413 PF01959 DHQS: 3-dehydroquinat 34.8 4E+02 0.0086 26.4 10.1 138 133-274 175-336 (354)
414 KOG1064 RAVE (regulator of V-A 34.8 43 0.00092 39.7 3.9 90 99-203 2333-2423(2439)
415 PF09259 Fve: Fungal immunomod 33.9 14 0.0003 29.9 0.1 43 222-268 60-102 (111)
416 PF04762 IKI3: IKI3 family; I 33.4 1.6E+02 0.0036 32.4 8.0 73 153-228 79-159 (928)
417 KOG2103 Uncharacterized conser 33.0 2.2E+02 0.0048 31.3 8.6 65 159-229 47-114 (910)
418 PF14298 DUF4374: Domain of un 33.0 5.4E+02 0.012 26.2 12.9 56 209-269 366-428 (435)
419 KOG4190 Uncharacterized conser 32.9 57 0.0012 34.4 4.2 101 169-270 803-911 (1034)
420 PF04841 Vps16_N: Vps16, N-ter 31.7 5.1E+02 0.011 25.4 12.2 102 105-226 218-322 (410)
421 KOG2103 Uncharacterized conser 31.1 5.3E+02 0.012 28.5 11.0 73 110-189 41-114 (910)
422 PF04351 PilP: Pilus assembly 30.9 2.3E+02 0.005 23.9 7.1 52 174-226 73-132 (149)
423 PLN03094 Substrate binding sub 30.8 84 0.0018 31.0 4.9 77 57-146 86-162 (370)
424 PF03736 EPTP: EPTP domain; I 30.5 90 0.0019 20.9 3.6 40 93-134 3-43 (44)
425 TIGR00547 lolA periplasmic cha 30.5 87 0.0019 28.0 4.6 23 200-223 77-99 (204)
426 COG4993 Gcd Glucose dehydrogen 30.2 3.6E+02 0.0078 29.0 9.4 91 96-187 378-497 (773)
427 PF10703 MoaF: Molybdenum cofa 29.8 45 0.00098 31.5 2.7 28 159-186 205-237 (265)
428 PF11879 DUF3399: Domain of un 29.6 45 0.00097 27.4 2.3 30 24-53 71-100 (104)
429 COG5167 VID27 Protein involved 29.3 2.9E+02 0.0063 29.2 8.4 65 200-268 478-548 (776)
430 PRK13861 type IV secretion sys 29.2 2.1E+02 0.0046 27.2 7.1 50 124-174 38-87 (292)
431 PF14312 FG-GAP_2: FG-GAP repe 29.1 1E+02 0.0023 21.2 3.8 26 145-170 12-37 (49)
432 KOG0276 Vesicle coat complex C 27.9 8E+02 0.017 26.5 15.7 149 92-244 86-242 (794)
433 KOG0974 WD-repeat protein WDR6 27.8 3.3E+02 0.007 30.4 8.9 114 98-220 171-290 (967)
434 PLN02258 9-cis-epoxycarotenoid 27.8 2E+02 0.0043 30.1 7.2 21 208-228 548-568 (590)
435 PF04762 IKI3: IKI3 family; I 27.3 6.3E+02 0.014 28.0 11.2 91 93-188 60-159 (928)
436 PF07646 Kelch_2: Kelch motif; 27.2 1.9E+02 0.0041 19.2 4.9 29 114-142 10-44 (49)
437 TIGR02781 VirB9 P-type conjuga 27.2 2.8E+02 0.006 25.4 7.4 50 124-174 34-83 (243)
438 PF13670 PepSY_2: Peptidase pr 27.1 1.3E+02 0.0029 22.5 4.5 34 237-270 44-80 (83)
439 KOG4693 Uncharacterized conser 27.1 5.8E+02 0.013 24.9 9.6 145 115-266 88-277 (392)
440 KOG0640 mRNA cleavage stimulat 26.9 2.9E+02 0.0064 27.3 7.7 121 110-232 267-397 (430)
441 PF12234 Rav1p_C: RAVE protein 26.9 7.1E+02 0.015 26.5 11.1 88 126-218 49-156 (631)
442 KOG0302 Ribosome Assembly prot 26.7 6.8E+02 0.015 25.3 11.6 153 101-266 210-379 (440)
443 KOG1034 Transcriptional repres 26.7 5E+02 0.011 25.8 9.2 116 93-219 77-212 (385)
444 PF10313 DUF2415: Uncharacteri 26.4 1.9E+02 0.0042 20.0 4.7 21 201-221 16-37 (43)
445 KOG2394 WD40 protein DMR-N9 [G 25.9 96 0.0021 32.4 4.4 34 108-143 333-369 (636)
446 PF15416 DUF4623: Domain of un 25.8 4.8E+02 0.01 26.1 8.9 114 155-270 139-276 (442)
447 KOG0974 WD-repeat protein WDR6 25.6 4.3E+02 0.0094 29.5 9.4 107 116-229 18-128 (967)
448 KOG0793 Protein tyrosine phosp 25.4 57 0.0012 35.2 2.7 24 161-184 818-841 (1004)
449 KOG1214 Nidogen and related ba 25.4 2.2E+02 0.0047 31.7 7.0 76 105-186 1156-1234(1289)
450 COG3292 Predicted periplasmic 25.4 7.1E+02 0.015 26.6 10.5 113 154-273 294-412 (671)
451 KOG1285 Beta, beta-carotene 15 25.1 2.5E+02 0.0055 29.5 7.4 69 126-195 486-567 (582)
452 cd01272 FE65_N Fe65 Phosphotyr 24.9 1.3E+02 0.0028 25.8 4.3 31 199-229 51-81 (138)
453 PF03646 FlaG: FlaG protein; 24.8 70 0.0015 25.2 2.7 20 126-145 66-85 (107)
454 PF14593 PH_3: PH domain; PDB: 24.8 1.3E+02 0.0029 24.3 4.2 32 198-230 27-58 (104)
455 TIGR02794 tolA_full TolA prote 24.6 45 0.00097 32.5 1.8 47 55-106 2-48 (346)
456 PF07494 Reg_prop: Two compone 24.5 97 0.0021 18.2 2.6 20 104-123 4-23 (24)
457 PF03646 FlaG: FlaG protein; 24.0 1.5E+02 0.0034 23.3 4.5 15 173-187 71-85 (107)
458 COG4247 Phy 3-phytase (myo-ino 23.6 1.7E+02 0.0037 28.3 5.3 87 84-177 186-287 (364)
459 TIGR03500 FliO_TIGR flagellar 23.3 1.7E+02 0.0036 21.3 4.3 23 91-113 29-51 (69)
460 PF00930 DPPIV_N: Dipeptidyl p 23.1 6.4E+02 0.014 23.7 12.8 97 108-206 238-345 (353)
461 KOG0301 Phospholipase A2-activ 23.1 9.9E+02 0.021 25.9 13.6 117 100-228 138-257 (745)
462 KOG1027 Serine/threonine prote 23.0 3.3E+02 0.0072 30.1 7.9 57 114-182 106-162 (903)
463 KOG2395 Protein involved in va 22.8 1.3E+02 0.0029 31.5 4.7 63 201-268 346-415 (644)
464 PF13415 Kelch_3: Galactose ox 22.7 2.4E+02 0.0052 18.7 5.2 41 116-156 2-47 (49)
465 COG2190 NagE Phosphotransferas 22.5 3.7E+02 0.008 23.5 6.8 74 128-213 4-83 (156)
466 PF15492 Nbas_N: Neuroblastoma 22.3 7E+02 0.015 23.9 13.6 106 97-205 36-164 (282)
467 KOG4283 Transcription-coupled 21.9 7.8E+02 0.017 24.3 14.2 164 90-271 101-282 (397)
468 COG2834 LolA Outer membrane li 21.7 2.5E+02 0.0055 24.8 5.9 56 85-144 36-104 (211)
469 COG5375 Uncharacterized protei 21.6 5.8E+02 0.013 23.5 8.1 57 39-101 23-81 (216)
470 PF14870 PSII_BNR: Photosynthe 21.6 7.1E+02 0.015 23.7 9.9 54 159-214 197-257 (302)
471 KOG1034 Transcriptional repres 21.6 8.1E+02 0.018 24.4 13.9 167 90-265 24-211 (385)
472 PLN02772 guanylate kinase 21.5 3.7E+02 0.008 26.9 7.5 67 152-219 27-109 (398)
No 1
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=100.00 E-value=4.8e-66 Score=474.04 Aligned_cols=188 Identities=49% Similarity=0.844 Sum_probs=160.9
Q ss_pred CCCCCceeeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEE
Q 023864 84 VDQSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLF 163 (276)
Q Consensus 84 ~~~~~~~~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~Ly 163 (276)
....+++++++|+++||||+.+|||||+|..||+||||||+||+|+|+++|++||++.++++||+++||||||+.||+||
T Consensus 24 ~~~~~~~~~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~ 103 (264)
T PF05096_consen 24 SAAPAPVYSYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLY 103 (264)
T ss_dssp ------EEEEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEE
T ss_pred ccCCCceeeeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEE
Confidence 34567789999999999999999999999768999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCEEEEEeCCCCcEEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEE
Q 023864 164 QVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF 243 (276)
Q Consensus 164 qlTwk~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~ 243 (276)
||||+++++|+||++||+++++|+|+ +||||||+||+.|||||||++|+++||+||+++++|.|+++|+|+.+||||||
T Consensus 104 qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~ 182 (264)
T PF05096_consen 104 QLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY 182 (264)
T ss_dssp EEESSSSEEEEEETTTTEEEEEEE-S-SS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE
T ss_pred EEEecCCeEEEEccccceEEEEEecC-CcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEE
Confidence 99999999999999999999999998 79999999999999999999999999999999999999999999999999999
Q ss_pred ECCEEEEEeCCCCCeEEEEeCCCCcEEEEEE
Q 023864 244 IKGEVWANVWQVWPCIPYAYLQAFGSSLVYV 274 (276)
Q Consensus 244 idG~lyANvw~s~d~I~vIDp~T~~v~l~~~ 274 (276)
+||+||||||++ |+|++|||+||+|+ +.+
T Consensus 183 i~G~IyANVW~t-d~I~~Idp~tG~V~-~~i 211 (264)
T PF05096_consen 183 INGKIYANVWQT-DRIVRIDPETGKVV-GWI 211 (264)
T ss_dssp ETTEEEEEETTS-SEEEEEETTT-BEE-EEE
T ss_pred EcCEEEEEeCCC-CeEEEEeCCCCeEE-EEE
Confidence 999999999999 99999999997765 554
No 2
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-60 Score=421.34 Aligned_cols=185 Identities=37% Similarity=0.652 Sum_probs=177.1
Q ss_pred CCCceeeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC-CCceEEEEEEeCCEEEE
Q 023864 86 QSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQ 164 (276)
Q Consensus 86 ~~~~~~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~-~~~FgEGit~~g~~Lyq 164 (276)
...+...++|+.+||||..+|||||++. ||++|||||+||.|+|+++|+++|+++...+++ +++||||+|..++.+||
T Consensus 27 a~t~~l~~evi~~yphDs~sfTQGL~~~-~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~ 105 (262)
T COG3823 27 AITKVLVYEVIRTYPHDSTSFTQGLEYL-DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQ 105 (262)
T ss_pred ccccCcceEEEEeccCchhhhhcceeee-CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEE
Confidence 3455667899999999999999999998 579999999999999999999999999999999 69999999999999999
Q ss_pred EEeeCCEEEEEeCCCCcEEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE
Q 023864 165 VTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (276)
Q Consensus 165 lTwk~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i 244 (276)
|||+++.+|+||++|++.+++|+|+ +||||||.|++.|+||||++.|+|+||+||+++++|.|+++|.||.+||||||+
T Consensus 106 LTw~egvaf~~d~~t~~~lg~~~y~-GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V 184 (262)
T COG3823 106 LTWKEGVAFKYDADTLEELGRFSYE-GEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV 184 (262)
T ss_pred EEeccceeEEEChHHhhhhcccccC-CcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee
Confidence 9999999999999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCCCeEEEEeCCCCcEEEEEE
Q 023864 245 KGEVWANVWQVWPCIPYAYLQAFGSSLVYV 274 (276)
Q Consensus 245 dG~lyANvw~s~d~I~vIDp~T~~v~l~~~ 274 (276)
||+||||||++ +.|++|||+||+|+ +.|
T Consensus 185 dG~lyANVw~t-~~I~rI~p~sGrV~-~wi 212 (262)
T COG3823 185 DGELYANVWQT-TRIARIDPDSGRVV-AWI 212 (262)
T ss_pred ccEEEEeeeee-cceEEEcCCCCcEE-EEE
Confidence 99999999999 99999999998876 554
No 3
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.51 E-value=4.1e-12 Score=121.97 Aligned_cols=94 Identities=10% Similarity=-0.065 Sum_probs=77.5
Q ss_pred eeeEEEEEEecCCCCCceEEEEecCC-EEEEEcCCC--------CCCeEEEEeCCCCcEEEEeecCCCce--------EE
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAEND-TLFESTGLY--------GRSSVRRVALETGKVEAINQMEGSYF--------GE 153 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~dg-~LyeStG~y--------g~S~I~~iDl~tgkv~~~~~l~~~~F--------gE 153 (276)
.+.+++.++|.. .+-+|+ +++|| .||.++. | +.+.|.+||++|+++++++++|+.+. .-
T Consensus 35 ~~~~v~g~i~~G--~~P~~~-~spDg~~lyva~~-~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~ 110 (352)
T TIGR02658 35 EAGRVLGMTDGG--FLPNPV-VASDGSFFAHAST-VYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMT 110 (352)
T ss_pred CCCEEEEEEEcc--CCCcee-ECCCCCEEEEEec-cccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceE
Confidence 367899999974 455686 99996 5888655 3 67899999999999999999987755 44
Q ss_pred EEEEeCCEEEEEEee-CCEEEEEeCCCCcEEEEEec
Q 023864 154 GLTLLGEKLFQVTWL-QKTGFIYDQNNLNKLEEFTH 188 (276)
Q Consensus 154 Git~~g~~LyqlTwk-~~~v~V~D~~tlk~i~~~~~ 188 (276)
+++.+|+.||+.++. ++.+.|+|.++.+++++++.
T Consensus 111 ~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 111 SLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred EECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence 566677899999999 99999999999988887764
No 4
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.49 E-value=4.8e-12 Score=121.63 Aligned_cols=168 Identities=17% Similarity=0.132 Sum_probs=120.0
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK 170 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~ 170 (276)
+.+++.++|... +.--++.|++||+ +|++ + .+..|.+||+.+++++++++.+..+.+..++.+|..+|+.+|..+
T Consensus 25 t~~~~~~i~~~~-~~h~~~~~s~Dgr~~yv~-~--rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~ 100 (369)
T PF02239_consen 25 TNKVVARIPTGG-APHAGLKFSPDGRYLYVA-N--RDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPG 100 (369)
T ss_dssp T-SEEEEEE-ST-TEEEEEE-TT-SSEEEEE-E--TTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETT
T ss_pred CCeEEEEEcCCC-CceeEEEecCCCCEEEEE-c--CCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCC
Confidence 568999999743 3346788999875 8886 4 357999999999999999999998776666667899999999999
Q ss_pred EEEEEeCCCCcEEEEEecC-CCC--------eeEEeeCCCEEEEEC-CCceEEEEcCCCCc--EEEEEEeeeCCEeeeee
Q 023864 171 TGFIYDQNNLNKLEEFTHQ-MKD--------GWGLATDGKVLFGSD-GSSMLYQIDPQTLK--VIRKDIVRYKGREVRNL 238 (276)
Q Consensus 171 ~v~V~D~~tlk~i~~~~~~-~~E--------GWGLT~Dg~~L~vSD-GS~~L~viDp~t~~--vi~~I~V~~~g~pv~~l 238 (276)
.+.++|.+|++++++++.. .+. +.--++++..++++- .+.+|+++|.++.+ .++.+.++. .+
T Consensus 101 ~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~------~~ 174 (369)
T PF02239_consen 101 TVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGR------FP 174 (369)
T ss_dssp EEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--T------TE
T ss_pred ceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccc------cc
Confidence 9999999999999999864 111 222346667666665 68999999987765 345666664 55
Q ss_pred eeeEEE-CC-EEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 239 NELEFI-KG-EVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 239 NELE~i-dG-~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
.+..+. +| ++++..+.+ |.|.+||+++++.+
T Consensus 175 ~D~~~dpdgry~~va~~~s-n~i~viD~~~~k~v 207 (369)
T PF02239_consen 175 HDGGFDPDGRYFLVAANGS-NKIAVIDTKTGKLV 207 (369)
T ss_dssp EEEEE-TTSSEEEEEEGGG-TEEEEEETTTTEEE
T ss_pred cccccCcccceeeeccccc-ceeEEEeeccceEE
Confidence 566666 34 688988899 99999999997655
No 5
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.40 E-value=1.9e-11 Score=117.46 Aligned_cols=132 Identities=11% Similarity=-0.037 Sum_probs=106.7
Q ss_pred CEEEEEcCCC--CCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEe---------eCCEEEEEeCCCCcEEE
Q 023864 116 DTLFESTGLY--GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW---------LQKTGFIYDQNNLNKLE 184 (276)
Q Consensus 116 g~LyeStG~y--g~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTw---------k~~~v~V~D~~tlk~i~ 184 (276)
.++|++...+ ..++|+++|.++++++.+++.+.++-+. ++.+++.||+++- .++.+.|||++|++.++
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~ 91 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA 91 (352)
T ss_pred CEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe
Confidence 3566665532 1389999999999999999999887775 7888899999999 99999999999999999
Q ss_pred EEecC-CCC--------eeEEeeCCCEEEEEC-C-CceEEEEcCCCCcEEEEEEeeeCCEeeee----eeeeEEECCEEE
Q 023864 185 EFTHQ-MKD--------GWGLATDGKVLFGSD-G-SSMLYQIDPQTLKVIRKDIVRYKGREVRN----LNELEFIKGEVW 249 (276)
Q Consensus 185 ~~~~~-~~E--------GWGLT~Dg~~L~vSD-G-S~~L~viDp~t~~vi~~I~V~~~g~pv~~----lNELE~idG~ly 249 (276)
+++.+ .|| ..+|++||++||++| - ++.|.++|.++.+++++|.|.+ +.-+.. -|=+-|+||...
T Consensus 92 ~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~~~~~Dg~~~ 170 (352)
T TIGR02658 92 DIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFFMHCRDGSLA 170 (352)
T ss_pred EEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccEEEeecCceE
Confidence 99975 234 888999999999999 4 8999999999999999999965 222221 122336777633
No 6
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.39 E-value=1.6e-10 Score=101.49 Aligned_cols=167 Identities=15% Similarity=0.118 Sum_probs=122.1
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGF 173 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~ 173 (276)
+.+.+++++. ...++.+++||.++..+.. +.+.+..+|.+++++......+..+-.-.+..++..||+....++.+.
T Consensus 106 ~~~~~~~~~~--~~~~~~~~~dg~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~ 182 (300)
T TIGR03866 106 KVLAEIPVGV--EPEGMAVSPDGKIVVNTSE-TTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVS 182 (300)
T ss_pred eEEeEeeCCC--CcceEEECCCCCEEEEEec-CCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEE
Confidence 5667776533 2468999999876554432 456788899999988777666655433334445677888777899999
Q ss_pred EEeCCCCcEEEEEecC---------CCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEE
Q 023864 174 IYDQNNLNKLEEFTHQ---------MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF 243 (276)
Q Consensus 174 V~D~~tlk~i~~~~~~---------~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~ 243 (276)
+||.++.+.+++++.. .+.+..+++||+.+|++. ++++|.++|.+++++++.+.++. .+..+.+
T Consensus 183 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~------~~~~~~~ 256 (300)
T TIGR03866 183 VIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQ------RVWQLAF 256 (300)
T ss_pred EEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCC------CcceEEE
Confidence 9999999988887642 123556789999999976 57789999999999987775542 3445566
Q ss_pred E-CC-EEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 244 I-KG-EVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 244 i-dG-~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
. +| +||++.-.+ +.|.++|.++++++
T Consensus 257 ~~~g~~l~~~~~~~-~~i~v~d~~~~~~~ 284 (300)
T TIGR03866 257 TPDEKYLLTTNGVS-NDVSVIDVAALKVI 284 (300)
T ss_pred CCCCCEEEEEcCCC-CeEEEEECCCCcEE
Confidence 4 44 688887678 99999999996643
No 7
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.34 E-value=4.1e-10 Score=98.83 Aligned_cols=164 Identities=19% Similarity=0.288 Sum_probs=122.2
Q ss_pred eEEEEEEecCCCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeC
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQ 169 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~ 169 (276)
-+++..+.+.... .++.+++||. ||.+++ ..+.|++||++++++....+.+..+ ..+++. ++.+|+.+..+
T Consensus 21 ~~~~~~~~~~~~~--~~l~~~~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~~--~~~~~~~~g~~l~~~~~~~ 94 (300)
T TIGR03866 21 LEVTRTFPVGQRP--RGITLSKDGKLLYVCAS--DSDTIQVIDLATGEVIGTLPSGPDP--ELFALHPNGKILYIANEDD 94 (300)
T ss_pred CceEEEEECCCCC--CceEECCCCCEEEEEEC--CCCeEEEEECCCCcEEEeccCCCCc--cEEEECCCCCEEEEEcCCC
Confidence 3466666653333 4799999875 777655 6788999999999987766554443 455554 56788888888
Q ss_pred CEEEEEeCCCCcEEEEEecC-CCCeeEEeeCCCEEEEECC-CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC
Q 023864 170 KTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG 246 (276)
Q Consensus 170 ~~v~V~D~~tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSDG-S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG 246 (276)
+.+.+||..+.+.+.+++.+ .+.+..+++||+.++++.. .+.++++|+++++.+..+.++. .++.+.+. ||
T Consensus 95 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~------~~~~~~~s~dg 168 (300)
T TIGR03866 95 NLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQ------RPRFAEFTADG 168 (300)
T ss_pred CeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCC------CccEEEECCCC
Confidence 99999999999999888744 3577788999999988774 4678889999998887766543 22334454 44
Q ss_pred -EEEEEeCCCCCeEEEEeCCCCcE
Q 023864 247 -EVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 247 -~lyANvw~s~d~I~vIDp~T~~v 269 (276)
.||++.... +.|.++|.++++.
T Consensus 169 ~~l~~~~~~~-~~v~i~d~~~~~~ 191 (300)
T TIGR03866 169 KELWVSSEIG-GTVSVIDVATRKV 191 (300)
T ss_pred CEEEEEcCCC-CEEEEEEcCccee
Confidence 588887677 8999999999654
No 8
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.29 E-value=3e-10 Score=104.96 Aligned_cols=171 Identities=10% Similarity=0.058 Sum_probs=112.2
Q ss_pred eEEEEEEecCCCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCC-CcE---EEEeecCCCceEEEEEEeCCEEEEEEe
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALET-GKV---EAINQMEGSYFGEGLTLLGEKLFQVTW 167 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~t-gkv---~~~~~l~~~~FgEGit~~g~~LyqlTw 167 (276)
.+.+++.+.... ..++.+++||+ ||.+ .|+.+.|.+||+++ |.+ +...+-...+.+..+...++.+|+.+.
T Consensus 70 l~~~~~~~~~~~--p~~i~~~~~g~~l~v~--~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~ 145 (330)
T PRK11028 70 LTFAAESPLPGS--PTHISTDHQGRFLFSA--SYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL 145 (330)
T ss_pred eEEeeeecCCCC--ceEEEECCCCCEEEEE--EcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC
Confidence 456677766333 46999999986 6654 36899999999974 432 222222233443334444679999999
Q ss_pred eCCEEEEEeCCCCcEEE-------EEecC-CCCeeEEeeCCCEEEEEC-CCceEEEEcCC--C--CcEEEEEEeeeCCE-
Q 023864 168 LQKTGFIYDQNNLNKLE-------EFTHQ-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQ--T--LKVIRKDIVRYKGR- 233 (276)
Q Consensus 168 k~~~v~V~D~~tlk~i~-------~~~~~-~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~--t--~~vi~~I~V~~~g~- 233 (276)
.++.+.+||.++...+. +++.+ .+.+..+++||++||++| ++++|.++|.+ + ++++.++.....+.
T Consensus 146 ~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~ 225 (330)
T PRK11028 146 KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFS 225 (330)
T ss_pred CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCC
Confidence 99999999998744332 22222 467788999999999998 59999998865 3 34444444321110
Q ss_pred eeeeeeeeEEE-CC-EEEEEeCCCCCeEEEEeCCCCc
Q 023864 234 EVRNLNELEFI-KG-EVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 234 pv~~lNELE~i-dG-~lyANvw~s~d~I~vIDp~T~~ 268 (276)
.-....++.+. || ++|+.+..+ +.|.++|.++.+
T Consensus 226 ~~~~~~~i~~~pdg~~lyv~~~~~-~~I~v~~i~~~~ 261 (330)
T PRK11028 226 DTRWAADIHITPDGRHLYACDRTA-SLISVFSVSEDG 261 (330)
T ss_pred CCccceeEEECCCCCEEEEecCCC-CeEEEEEEeCCC
Confidence 01133455544 34 699999889 999999876543
No 9
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.29 E-value=2.6e-10 Score=105.37 Aligned_cols=152 Identities=11% Similarity=0.062 Sum_probs=104.2
Q ss_pred eEEEEecCCE-EEEEcCCCCCCeEEEEeCCC-CcEEE------EeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCC-
Q 023864 108 QGLLYAENDT-LFESTGLYGRSSVRRVALET-GKVEA------INQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQN- 178 (276)
Q Consensus 108 QGL~~~~dg~-LyeStG~yg~S~I~~iDl~t-gkv~~------~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~- 178 (276)
.++.++|||+ ||.+. ++.+.|.+||+++ |++.. ..+.+..+.+..++.++..+|++++.++.+.+||.+
T Consensus 129 ~~~~~~p~g~~l~v~~--~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~ 206 (330)
T PRK11028 129 HSANIDPDNRTLWVPC--LKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKD 206 (330)
T ss_pred cEeEeCCCCCEEEEee--CCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence 4788999874 77653 5999999999987 43321 223455555444444567999999999999999976
Q ss_pred ---CCcEEEEEec-C---CCC----eeEEeeCCCEEEEEC-CCceEEEEcCC----CCcEEEEEEeeeCCEeeeeeeeeE
Q 023864 179 ---NLNKLEEFTH-Q---MKD----GWGLATDGKVLFGSD-GSSMLYQIDPQ----TLKVIRKDIVRYKGREVRNLNELE 242 (276)
Q Consensus 179 ---tlk~i~~~~~-~---~~E----GWGLT~Dg~~L~vSD-GS~~L~viDp~----t~~vi~~I~V~~~g~pv~~lNELE 242 (276)
+++.+.++.. + .++ ++.+++||++||++| +++.|.++|.+ .+++++.+.++. .+..+.
T Consensus 207 ~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~------~p~~~~ 280 (330)
T PRK11028 207 PHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTET------QPRGFN 280 (330)
T ss_pred CCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccc------cCCceE
Confidence 4455666542 1 012 355789999999999 68999998763 335566666653 233344
Q ss_pred EE-CC-EEEEEeCCCCCeEEEE--eCCCCc
Q 023864 243 FI-KG-EVWANVWQVWPCIPYA--YLQAFG 268 (276)
Q Consensus 243 ~i-dG-~lyANvw~s~d~I~vI--Dp~T~~ 268 (276)
+. || +|||++..+ +.|.++ |.++|.
T Consensus 281 ~~~dg~~l~va~~~~-~~v~v~~~~~~~g~ 309 (330)
T PRK11028 281 IDHSGKYLIAAGQKS-HHISVYEIDGETGL 309 (330)
T ss_pred ECCCCCEEEEEEccC-CcEEEEEEcCCCCc
Confidence 43 44 799999888 988886 666754
No 10
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.27 E-value=2.8e-10 Score=109.54 Aligned_cols=140 Identities=18% Similarity=0.105 Sum_probs=101.0
Q ss_pred CCCeEEEEeCCCCcEEEEeecCCCceEEEEEE--eCCEEEEEEeeCCEEEEEeCCCCcEEEEEecC-CCCeeEEeeCCCE
Q 023864 126 GRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKV 202 (276)
Q Consensus 126 g~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~--~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~-~~EGWGLT~Dg~~ 202 (276)
+.++|.++|.+|.+++.+++.+..+ ..++.. ++..+|+.+ +++.+.+||+.+.+++++++.+ .+.|.++++||++
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~~-h~~~~~s~Dgr~~yv~~-rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~ 91 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGAP-HAGLKFSPDGRYLYVAN-RDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKY 91 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STTE-EEEEE-TT-SSEEEEEE-TTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTE
T ss_pred CCCEEEEEECCCCeEEEEEcCCCCc-eeEEEecCCCCEEEEEc-CCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCE
Confidence 8899999999999999999987665 344444 567899987 6899999999999999999987 4677778999999
Q ss_pred EEEEC-CCceEEEEcCCCCcEEEEEEeeeCCE--eeeeeeeeEEE-C-CEEEEEeCCCCCeEEEEeCCCCc
Q 023864 203 LFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGR--EVRNLNELEFI-K-GEVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 203 L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~--pv~~lNELE~i-d-G~lyANvw~s~d~I~vIDp~T~~ 268 (276)
+|++| ..+.|.++|.+|++++++|.++.... +-.+..-+-.. + .+..+|+..+ +.|.++|....+
T Consensus 92 ~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~-~~I~vVdy~d~~ 161 (369)
T PF02239_consen 92 VYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDT-GEIWVVDYSDPK 161 (369)
T ss_dssp EEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTT-TEEEEEETTTSS
T ss_pred EEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccC-CeEEEEEecccc
Confidence 99999 69999999999999999999974111 11122222222 2 3466899999 999999977653
No 11
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.26 E-value=9.1e-10 Score=103.88 Aligned_cols=158 Identities=12% Similarity=0.171 Sum_probs=107.5
Q ss_pred CCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCc--EEE--EeecCCCceEEEEEEe--CCEEEEEEeeCCEEEEEe
Q 023864 104 RAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGK--VEA--INQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYD 176 (276)
Q Consensus 104 ~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgk--v~~--~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~D 176 (276)
.+....+.++|||+ ||+. . .|.++|++|+++..+ +.. .+.++..-=+-.++++ ++.+|+++..++.+.+|+
T Consensus 143 ~~h~H~v~~~pdg~~v~v~-d-lG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~ 220 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRFVYVP-D-LGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFD 220 (345)
T ss_dssp STCEEEEEE-TTSSEEEEE-E-TTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred cccceeEEECCCCCEEEEE-e-cCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEe
Confidence 45556899999975 7765 3 399999999987654 543 3344543334456665 579999999999999998
Q ss_pred CC----CCcEEEEEecC--------CCCeeEEeeCCCEEEEEC-CCceEEEEcC--CCCcE--EEEEEeeeCCEeeeeee
Q 023864 177 QN----NLNKLEEFTHQ--------MKDGWGLATDGKVLFGSD-GSSMLYQIDP--QTLKV--IRKDIVRYKGREVRNLN 239 (276)
Q Consensus 177 ~~----tlk~i~~~~~~--------~~EGWGLT~Dg~~L~vSD-GS~~L~viDp--~t~~v--i~~I~V~~~g~pv~~lN 239 (276)
.. .++.+.+++.- .+.+..+++||++||+|| |.+.|.+++. +++++ +..+.+ .|. .+.
T Consensus 221 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~--~G~---~Pr 295 (345)
T PF10282_consen 221 YDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT--GGK---FPR 295 (345)
T ss_dssp EETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE--SSS---SEE
T ss_pred ecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC--CCC---Ccc
Confidence 87 56666776531 123445899999999999 8998888875 55554 444444 233 233
Q ss_pred eeEE--ECCEEEEEeCCCCCeEEEE--eCCCCcE
Q 023864 240 ELEF--IKGEVWANVWQVWPCIPYA--YLQAFGS 269 (276)
Q Consensus 240 ELE~--idG~lyANvw~s~d~I~vI--Dp~T~~v 269 (276)
.+.+ .+.+|||.+-.+ |.|.++ |++||..
T Consensus 296 ~~~~s~~g~~l~Va~~~s-~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 296 HFAFSPDGRYLYVANQDS-NTVSVFDIDPDTGKL 328 (345)
T ss_dssp EEEE-TTSSEEEEEETTT-TEEEEEEEETTTTEE
T ss_pred EEEEeCCCCEEEEEecCC-CeEEEEEEeCCCCcE
Confidence 4555 345799999899 988865 7888763
No 12
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=5.7e-10 Score=107.25 Aligned_cols=161 Identities=12% Similarity=0.060 Sum_probs=130.5
Q ss_pred CCceEEEEecCC-EEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEe--eCCEEEEEeCCCCc
Q 023864 105 AFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW--LQKTGFIYDQNNLN 181 (276)
Q Consensus 105 aFTQGL~~~~dg-~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTw--k~~~v~V~D~~tlk 181 (276)
...+|+.+.+++ ++|..++ +.+.|.++|.++.++...+.++..+.+..++.+++.+|+.+- .++++.++|.++.+
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~--~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTG--DSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccccceeeCCCCCeEEEecC--CCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence 677899998876 4999888 789999999999999999999998777777777899999999 68999999999999
Q ss_pred EEEEEecC-CCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEE-E----EEeeeCCEeeeeeeeeEEECCEEEEEeCC
Q 023864 182 KLEEFTHQ-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIR-K----DIVRYKGREVRNLNELEFIKGEVWANVWQ 254 (276)
Q Consensus 182 ~i~~~~~~-~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~-~----I~V~~~g~pv~~lNELE~idG~lyANvw~ 254 (276)
++++++.+ .|.|..+++||+.+|+.| +++.|.++|+++.++.+ + +.+.. .|.. ...-..+.++|+.+..
T Consensus 152 ~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~--~P~~--i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 152 VTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGT--GPAG--IAVDPDGNRVYVANDG 227 (381)
T ss_pred EEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCC--CCce--EEECCCCCEEEEEecc
Confidence 99998876 467888999999999999 89999999999988874 2 33332 2221 0011234579999988
Q ss_pred CC-CeEEEEeCCCCcEEE
Q 023864 255 VW-PCIPYAYLQAFGSSL 271 (276)
Q Consensus 255 s~-d~I~vIDp~T~~v~l 271 (276)
++ +.|.+||.+++.+.-
T Consensus 228 ~~~~~v~~id~~~~~v~~ 245 (381)
T COG3391 228 SGSNNVLKIDTATGNVTA 245 (381)
T ss_pred CCCceEEEEeCCCceEEE
Confidence 72 499999999976653
No 13
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.20 E-value=4.8e-09 Score=93.39 Aligned_cols=159 Identities=14% Similarity=0.172 Sum_probs=110.3
Q ss_pred ceEEEEe-cCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC----CCceEEEEEEe-CCEEEEEEeeC--------CEE
Q 023864 107 TQGLLYA-ENDTLFESTGLYGRSSVRRVALETGKVEAINQME----GSYFGEGLTLL-GEKLFQVTWLQ--------KTG 172 (276)
Q Consensus 107 TQGL~~~-~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~----~~~FgEGit~~-g~~LyqlTwk~--------~~v 172 (276)
.-|+.+. ++|.||.+.. ..+.++|++++++......+ +..+.-.++++ +++||+.+-.. +.+
T Consensus 42 ~~G~~~~~~~g~l~v~~~----~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v 117 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADS----GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSV 117 (246)
T ss_dssp EEEEEEECTTSEEEEEET----TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEE
T ss_pred CceEEEEccCCEEEEEEc----CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccce
Confidence 5799999 7899998754 55677799999876666552 45667777876 47899988755 679
Q ss_pred EEEeCCCCcEEEEE-ecCCCCeeEEeeCCCEEEEEC-CCceEEEEcCC--CCcEEEEEEeee-CCEeeeeeeeeEEE-CC
Q 023864 173 FIYDQNNLNKLEEF-THQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQ--TLKVIRKDIVRY-KGREVRNLNELEFI-KG 246 (276)
Q Consensus 173 ~V~D~~tlk~i~~~-~~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~--t~~vi~~I~V~~-~g~pv~~lNELE~i-dG 246 (276)
+.+|++ .+...-. ....+.|.++++||+.||++| ...+|+.+|.+ +.++..+-.+.+ .+.. ..+.-|.+. +|
T Consensus 118 ~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-g~pDG~~vD~~G 195 (246)
T PF08450_consen 118 YRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP-GYPDGLAVDSDG 195 (246)
T ss_dssp EEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS-CEEEEEEEBTTS
T ss_pred EEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC-cCCCcceEcCCC
Confidence 999998 4432222 123468999999999999999 79999999985 333432222211 1111 234456665 78
Q ss_pred EEEEEeCCCCCeEEEEeCCCCcEEEEEE
Q 023864 247 EVWANVWQVWPCIPYAYLQAFGSSLVYV 274 (276)
Q Consensus 247 ~lyANvw~s~d~I~vIDp~T~~v~l~~~ 274 (276)
.||++.|.. +.|.++||+ |+++ ..|
T Consensus 196 ~l~va~~~~-~~I~~~~p~-G~~~-~~i 220 (246)
T PF08450_consen 196 NLWVADWGG-GRIVVFDPD-GKLL-REI 220 (246)
T ss_dssp -EEEEEETT-TEEEEEETT-SCEE-EEE
T ss_pred CEEEEEcCC-CEEEEECCC-ccEE-EEE
Confidence 999999999 999999999 6643 444
No 14
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=2e-09 Score=103.50 Aligned_cols=174 Identities=15% Similarity=0.077 Sum_probs=136.9
Q ss_pred eeEEEEEEecCCCCCceEEEEecCC-EEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK 170 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg-~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~ 170 (276)
+.+++++.+... ..+|+.+++++ .+|++...++.+.+.++|.+++++++..+.+..+++..++..+.++|+.+--++
T Consensus 105 ~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~ 182 (381)
T COG3391 105 TNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDN 182 (381)
T ss_pred ccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCC
Confidence 466777777754 66799999986 799987766789999999999999999999888866666667899999999999
Q ss_pred EEEEEeCCCCcEEE-E----EecC-CCCeeEEeeCCCEEEEECC-C--ceEEEEcCCCCcEEEE-EEeeeCCEeeeeeee
Q 023864 171 TGFIYDQNNLNKLE-E----FTHQ-MKDGWGLATDGKVLFGSDG-S--SMLYQIDPQTLKVIRK-DIVRYKGREVRNLNE 240 (276)
Q Consensus 171 ~v~V~D~~tlk~i~-~----~~~~-~~EGWGLT~Dg~~L~vSDG-S--~~L~viDp~t~~vi~~-I~V~~~g~pv~~lNE 240 (276)
.++++|.++-++.. + +... .|.+..+.+||+.+|+.+. + .++..+|..+.++... ..+..+ .|....
T Consensus 183 ~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~-- 259 (381)
T COG3391 183 TVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVA-- 259 (381)
T ss_pred eEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCcee--
Confidence 99999998888774 2 3322 4566678899999999994 4 5999999999999887 555543 332211
Q ss_pred eEEECCEEEEEeCCCCCeEEEEeCCCCcEEE
Q 023864 241 LEFIKGEVWANVWQVWPCIPYAYLQAFGSSL 271 (276)
Q Consensus 241 LE~idG~lyANvw~s~d~I~vIDp~T~~v~l 271 (276)
....+.++|+..-+. +.+.+||..+.+++.
T Consensus 260 ~~p~g~~~yv~~~~~-~~V~vid~~~~~v~~ 289 (381)
T COG3391 260 VDPAGKAAYVANSQG-GTVSVIDGATDRVVK 289 (381)
T ss_pred ECCCCCEEEEEecCC-CeEEEEeCCCCceee
Confidence 224566799877778 999999999976653
No 15
>PRK02888 nitrous-oxide reductase; Validated
Probab=99.17 E-value=5e-10 Score=114.05 Aligned_cols=144 Identities=17% Similarity=0.140 Sum_probs=117.2
Q ss_pred cCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEee------------------------
Q 023864 114 ENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL------------------------ 168 (276)
Q Consensus 114 ~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk------------------------ 168 (276)
+||+ |++ + ....+.++++|.++.++..++.++.++....++.+++.+|+..+.
T Consensus 202 nDGk~l~~-~-~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 202 NDGKDLDD-P-KKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred CCCCEeec-c-cceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 3554 433 3 236789999999999999999999888777777778888887532
Q ss_pred ---------------CCEEEEEeCCC-----CcEEEEEecC-CCCeeEEeeCCCEEEEECC-CceEEEEcCCCCc-----
Q 023864 169 ---------------QKTGFIYDQNN-----LNKLEEFTHQ-MKDGWGLATDGKVLFGSDG-SSMLYQIDPQTLK----- 221 (276)
Q Consensus 169 ---------------~~~v~V~D~~t-----lk~i~~~~~~-~~EGWGLT~Dg~~L~vSDG-S~~L~viDp~t~~----- 221 (276)
+++|.|+|..+ .+.+..++.+ .|+|..++|||+++|++++ |+.|+|||.++++
T Consensus 280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence 27899999999 7899999998 6777778999999999996 9999999999988
Q ss_pred -------EEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCC
Q 023864 222 -------VIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 222 -------vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T 266 (276)
+++++.|+. .|++ -+|. +|..|...+-+ ..|++.|.++
T Consensus 360 ~~~~~~~vvaevevGl--GPLH----TaFDg~G~aytslf~d-sqv~kwn~~~ 405 (635)
T PRK02888 360 KIKPRDAVVAEPELGL--GPLH----TAFDGRGNAYTTLFLD-SQIVKWNIEA 405 (635)
T ss_pred cCCccceEEEeeccCC--Ccce----EEECCCCCEEEeEeec-ceeEEEehHH
Confidence 588899976 4443 2354 45799999999 9999999876
No 16
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.08 E-value=1.9e-08 Score=108.52 Aligned_cols=159 Identities=14% Similarity=0.152 Sum_probs=113.6
Q ss_pred ceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCcEEEEee------cC-------CCceEEEEEEe--CCEEEEEEeeCC
Q 023864 107 TQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQ------ME-------GSYFGEGLTLL--GEKLFQVTWLQK 170 (276)
Q Consensus 107 TQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~------l~-------~~~FgEGit~~--g~~LyqlTwk~~ 170 (276)
..|+.+++ ++.||++.. +.+.|++||+.+|.+..-.. .. .-..+.||++. +++||+++..++
T Consensus 685 P~gVa~dp~~g~LyVad~--~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~ 762 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMA--GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESS 762 (1057)
T ss_pred CeEEEEecCCCeEEEEEC--CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCC
Confidence 35899998 588999865 89999999999887632110 00 01134567775 467999999999
Q ss_pred EEEEEeCCCCcEEEEE-----------e------------cCCCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEE
Q 023864 171 TGFIYDQNNLNKLEEF-----------T------------HQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKD 226 (276)
Q Consensus 171 ~v~V~D~~tlk~i~~~-----------~------------~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I 226 (276)
++.+||+++.+..-.. . ...|.|..+++||+ +||+| +.++|.++|+++.++....
T Consensus 763 ~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tia 841 (1057)
T PLN02919 763 SIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLA 841 (1057)
T ss_pred eEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEe
Confidence 9999999876532100 0 11245666777775 89999 7899999999998877555
Q ss_pred EeeeC----CE----eeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 227 IVRYK----GR----EVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 227 ~V~~~----g~----pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T~~v 269 (276)
.++.. |. ....++.+.+. ||+||+..... ++|.+||.+++++
T Consensus 842 G~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N-n~Irvid~~~~~~ 892 (1057)
T PLN02919 842 GTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN-SLIRYLDLNKGEA 892 (1057)
T ss_pred ccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC-CEEEEEECCCCcc
Confidence 44421 11 22356666665 68999999999 9999999999765
No 17
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.07 E-value=1.1e-08 Score=110.20 Aligned_cols=157 Identities=17% Similarity=0.120 Sum_probs=112.0
Q ss_pred ceEEEEecCC-EEEEEcCCCCCCeEEEEeCCCCcEEEEeecC-------C--------CceEEEEEEe--CCEEEEEEee
Q 023864 107 TQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQME-------G--------SYFGEGLTLL--GEKLFQVTWL 168 (276)
Q Consensus 107 TQGL~~~~dg-~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~-------~--------~~FgEGit~~--g~~LyqlTwk 168 (276)
.+|+++++++ .||++.. +...|+++|+.++++..-..-+ . -..+.|++++ ++.||+..+.
T Consensus 626 P~GIavd~~gn~LYVaDt--~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADT--ENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CcEEEEeCCCCEEEEEeC--CCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 5799999864 6998755 7789999999998763321100 0 0123467776 6899999999
Q ss_pred CCEEEEEeCCCCcEEEEEe-----------------cCCCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeee
Q 023864 169 QKTGFIYDQNNLNKLEEFT-----------------HQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 169 ~~~v~V~D~~tlk~i~~~~-----------------~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~ 230 (276)
++++.+||+.+.... .+. ...|.|..+++||++||++| ++++|.++|+++.... +.++.
T Consensus 704 ~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~--~~~gg 780 (1057)
T PLN02919 704 QHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSR--LLAGG 780 (1057)
T ss_pred CCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE--EEEec
Confidence 999999999876542 110 11356777889999999999 6899999999987652 22210
Q ss_pred --------------CCE----eeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 231 --------------KGR----EVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 231 --------------~g~----pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T~~v 269 (276)
+|. ...++..+.+. +|.||+..+.. ++|.+||++++.+
T Consensus 781 ~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N-~rIrviD~~tg~v 837 (1057)
T PLN02919 781 DPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN-HKIKKLDPATKRV 837 (1057)
T ss_pred ccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC-CEEEEEECCCCeE
Confidence 010 12245556655 67899999999 9999999999654
No 18
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.96 E-value=4.6e-07 Score=78.71 Aligned_cols=171 Identities=16% Similarity=0.126 Sum_probs=120.2
Q ss_pred eeEEEEEEecCCCCCceEE--EEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeC
Q 023864 92 TIQVVNEFPHDPRAFTQGL--LYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ 169 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL--~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~ 169 (276)
+-+++-+++. ...+..++ .+..++++|.++ +...|..+|..||+++-+..++...... ....++++|+++ .+
T Consensus 12 tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~---~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~v~v~~-~~ 85 (238)
T PF13360_consen 12 TGKELWSYDL-GPGIGGPVATAVPDGGRVYVAS---GDGNLYALDAKTGKVLWRFDLPGPISGA-PVVDGGRVYVGT-SD 85 (238)
T ss_dssp TTEEEEEEEC-SSSCSSEEETEEEETTEEEEEE---TTSEEEEEETTTSEEEEEEECSSCGGSG-EEEETTEEEEEE-TT
T ss_pred CCCEEEEEEC-CCCCCCccceEEEeCCEEEEEc---CCCEEEEEECCCCCEEEEeeccccccce-eeeccccccccc-ce
Confidence 4456666666 22365666 664578999863 6789999999999999999886554433 478899999999 55
Q ss_pred CEEEEEeCCCCcEEEEE-ecC---CC--CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeC--CEeee----e
Q 023864 170 KTGFIYDQNNLNKLEEF-THQ---MK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK--GREVR----N 237 (276)
Q Consensus 170 ~~v~V~D~~tlk~i~~~-~~~---~~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~--g~pv~----~ 237 (276)
+.++.+|..|.+++.++ ... .+ .....+.+|+.+|+...+..|+.+|++|++++-+..+... ..++. .
T Consensus 86 ~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~ 165 (238)
T PF13360_consen 86 GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDI 165 (238)
T ss_dssp SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTE
T ss_pred eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeeccc
Confidence 69999999999999985 321 11 1122455699999998899999999999999988888431 11211 1
Q ss_pred eeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 238 LNELEFIKGEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 238 lNELE~idG~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
...+.+.+|+||+..-.. .++.+|.++|++.
T Consensus 166 ~~~~~~~~~~v~~~~~~g--~~~~~d~~tg~~~ 196 (238)
T PF13360_consen 166 NGSPVISDGRVYVSSGDG--RVVAVDLATGEKL 196 (238)
T ss_dssp EEEEECCTTEEEEECCTS--SEEEEETTTTEEE
T ss_pred ccceEEECCEEEEEcCCC--eEEEEECCCCCEE
Confidence 223334467888877433 3555599997743
No 19
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.95 E-value=4.1e-07 Score=85.78 Aligned_cols=171 Identities=12% Similarity=0.014 Sum_probs=118.5
Q ss_pred eeeEEEEEEecCCCC----CceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEE
Q 023864 91 YTIQVVNEFPHDPRA----FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVT 166 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~a----FTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlT 166 (276)
.+.+++=+++..... ...+..+. ++++|.++. ...|..+|.++|+++=+.+++... .-+.++.++++|+.+
T Consensus 38 ~~~~~~W~~~~~~~~~~~~~~~~p~v~-~~~v~v~~~---~g~v~a~d~~tG~~~W~~~~~~~~-~~~p~v~~~~v~v~~ 112 (377)
T TIGR03300 38 VKVDQVWSASVGDGVGHYYLRLQPAVA-GGKVYAADA---DGTVVALDAETGKRLWRVDLDERL-SGGVGADGGLVFVGT 112 (377)
T ss_pred CcceeeeEEEcCCCcCccccccceEEE-CCEEEEECC---CCeEEEEEccCCcEeeeecCCCCc-ccceEEcCCEEEEEc
Confidence 455666677664322 22355666 589997654 357999999999998888888653 446788899999877
Q ss_pred eeCCEEEEEeCCCCcEEEEEecCCCCeeE-EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEEC
Q 023864 167 WLQKTGFIYDQNNLNKLEEFTHQMKDGWG-LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK 245 (276)
Q Consensus 167 wk~~~v~V~D~~tlk~i~~~~~~~~EGWG-LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~id 245 (276)
. ++.++.+|++|.+++-+...+ .+-.+ ..-+++.+|+..++..|+.+|+++++++-+..............-....+
T Consensus 113 ~-~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~ 190 (377)
T TIGR03300 113 E-KGEVIALDAEDGKELWRAKLS-SEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIAD 190 (377)
T ss_pred C-CCEEEEEECCCCcEeeeeccC-ceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEEC
Confidence 5 689999999999999888765 22222 22356788888888899999999999876665432111000001122457
Q ss_pred CEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 246 GEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 246 G~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
|.+|+.. .. ..+..||+++|++.
T Consensus 191 ~~v~~~~-~~-g~v~ald~~tG~~~ 213 (377)
T TIGR03300 191 GGVLVGF-AG-GKLVALDLQTGQPL 213 (377)
T ss_pred CEEEEEC-CC-CEEEEEEccCCCEe
Confidence 7888765 45 78999999998754
No 20
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.92 E-value=1.3e-07 Score=89.31 Aligned_cols=175 Identities=15% Similarity=0.149 Sum_probs=121.1
Q ss_pred eeeEEEEEEecCCCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCC-CcEEEEee--------------cCCCceEEE
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALET-GKVEAINQ--------------MEGSYFGEG 154 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~t-gkv~~~~~--------------l~~~~FgEG 154 (276)
.+.+.+++.+.. ..-.-.+.+++|++ ||.+ .|+.+.|.+++++. |++..... -.+++-...
T Consensus 74 g~L~~~~~~~~~-g~~p~~i~~~~~g~~l~va--ny~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~ 150 (345)
T PF10282_consen 74 GTLTLLNSVPSG-GSSPCHIAVDPDGRFLYVA--NYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVV 150 (345)
T ss_dssp TEEEEEEEEEES-SSCEEEEEECTTSSEEEEE--ETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEE
T ss_pred ceeEEeeeeccC-CCCcEEEEEecCCCEEEEE--EccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEE
Confidence 367788898863 34445899998875 7764 58999999999987 66654421 123444444
Q ss_pred EEEeCCEEEEEEeeCCEEEEEeCCC----CcEEEEEecC---CCCeeEEeeCCCEEEEEC-CCceEEEEcCC--C--CcE
Q 023864 155 LTLLGEKLFQVTWLQKTGFIYDQNN----LNKLEEFTHQ---MKDGWGLATDGKVLFGSD-GSSMLYQIDPQ--T--LKV 222 (276)
Q Consensus 155 it~~g~~LyqlTwk~~~v~V~D~~t----lk~i~~~~~~---~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~--t--~~v 222 (276)
++.+++.+|+.....+++++|+.+. ++....+..+ .|.+..+++||+++|+.+ .+++|.+++.. + ++.
T Consensus 151 ~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~ 230 (345)
T PF10282_consen 151 FSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTE 230 (345)
T ss_dssp E-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred ECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeE
Confidence 5555789999999999999998765 3344555544 355677999999999988 69999999876 4 445
Q ss_pred EEEEEeeeCCEee-eeeeeeEEE-CC-EEEEEeCCCCCeEEEEeC--CCCcE
Q 023864 223 IRKDIVRYKGREV-RNLNELEFI-KG-EVWANVWQVWPCIPYAYL--QAFGS 269 (276)
Q Consensus 223 i~~I~V~~~g~pv-~~lNELE~i-dG-~lyANvw~s~d~I~vIDp--~T~~v 269 (276)
+.++.....+..- ....|+... || +|||.+-.. |.|++++. ++|+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~-~sI~vf~~d~~~g~l 281 (345)
T PF10282_consen 231 IQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS-NSISVFDLDPATGTL 281 (345)
T ss_dssp EEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT-TEEEEEEECTTTTTE
T ss_pred EEEeeeccccccccCCceeEEEecCCCEEEEEeccC-CEEEEEEEecCCCce
Confidence 5566554332211 256777777 55 699999999 99988886 55553
No 21
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.92 E-value=2.9e-07 Score=85.57 Aligned_cols=165 Identities=19% Similarity=0.228 Sum_probs=118.6
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCE
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKT 171 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~ 171 (276)
+-+++++.+.++.-|=+|+++.+ ++||.=| |.+....+||.+|-+.+.+.+.+.. |=|||-++++||+-+. +++
T Consensus 77 tg~~~~~~~l~~~~FgEGit~~~-d~l~qLT--Wk~~~~f~yd~~tl~~~~~~~y~~E--GWGLt~dg~~Li~SDG-S~~ 150 (264)
T PF05096_consen 77 TGKVLQSVPLPPRYFGEGITILG-DKLYQLT--WKEGTGFVYDPNTLKKIGTFPYPGE--GWGLTSDGKRLIMSDG-SSR 150 (264)
T ss_dssp TSSEEEEEE-TTT--EEEEEEET-TEEEEEE--SSSSEEEEEETTTTEEEEEEE-SSS----EEEECSSCEEEE-S-SSE
T ss_pred CCcEEEEEECCccccceeEEEEC-CEEEEEE--ecCCeEEEEccccceEEEEEecCCc--ceEEEcCCCEEEEECC-ccc
Confidence 45788999999999999999995 7888764 4788899999999999999999877 5589989999988887 899
Q ss_pred EEEEeCCCCcEEEEEecC-CCCeeE----EeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeee-------CCE---ee
Q 023864 172 GFIYDQNNLNKLEEFTHQ-MKDGWG----LATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRY-------KGR---EV 235 (276)
Q Consensus 172 v~V~D~~tlk~i~~~~~~-~~EGWG----LT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~-------~g~---pv 235 (276)
++.+|++++++++++... .+.... |-.-+..+|..= .++.|..|||+|++|++.+.... +.. ..
T Consensus 151 L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~ 230 (264)
T PF05096_consen 151 LYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDD 230 (264)
T ss_dssp EEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TT
T ss_pred eEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccC
Confidence 999999999999999754 222332 444456777755 79999999999999999998852 111 13
Q ss_pred eeeeeeEEE--CCEEEEEeCCCCCeEEEEe
Q 023864 236 RNLNELEFI--KGEVWANVWQVWPCIPYAY 263 (276)
Q Consensus 236 ~~lNELE~i--dG~lyANvw~s~d~I~vID 263 (276)
.-||-+.|+ .+++|+.= .-|+.+..|.
T Consensus 231 dVLNGIAyd~~~~~l~vTG-K~Wp~lyeV~ 259 (264)
T PF05096_consen 231 DVLNGIAYDPETDRLFVTG-KLWPKLYEVK 259 (264)
T ss_dssp S-EEEEEEETTTTEEEEEE-TT-SEEEEEE
T ss_pred CeeEeEeEeCCCCEEEEEe-CCCCceEEEE
Confidence 569999996 56888774 3336677664
No 22
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.86 E-value=7.4e-08 Score=98.42 Aligned_cols=156 Identities=19% Similarity=0.181 Sum_probs=114.6
Q ss_pred CCCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCC---------------C-ceEE-----EEEEeC
Q 023864 102 DPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEG---------------S-YFGE-----GLTLLG 159 (276)
Q Consensus 102 d~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~---------------~-~FgE-----Git~~g 159 (276)
..-+||.|- + ||+ ||.- .--..+|.+++++..|..+-+.+|. . .|+- =+.-+|
T Consensus 130 p~~s~t~g~-y--dGr~~fin--dk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDG 204 (635)
T PRK02888 130 PHMSFTDGT-Y--DGRYLFIN--DKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDG 204 (635)
T ss_pred CcccccCCc-c--ceeEEEEe--cCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCC
Confidence 345677774 2 455 7753 2367899999999888766665551 1 1111 111123
Q ss_pred CEEEEEEeeCCEEEEEeCCCCcEEEEEecC-CCCeeEEeeCCCEEEEEC-------------------------------
Q 023864 160 EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSD------------------------------- 207 (276)
Q Consensus 160 ~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSD------------------------------- 207 (276)
..++......+.+.++|.+++++..++..+ .+.+..+++||+++|++.
T Consensus 205 k~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~ 284 (635)
T PRK02888 205 KDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEA 284 (635)
T ss_pred CEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHh
Confidence 467777778899999999999999999887 678888999999999985
Q ss_pred ---------CCceEEEEcCCC-----CcEEEEEEeeeCCEeeeeeeeeEEE-CC-EEEEEeCCCCCeEEEEeCCCCcE
Q 023864 208 ---------GSSMLYQIDPQT-----LKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 208 ---------GS~~L~viDp~t-----~~vi~~I~V~~~g~pv~~lNELE~i-dG-~lyANvw~s~d~I~vIDp~T~~v 269 (276)
+.++|.+||+.+ .++++.|.|+...+- + ... || ++|++++.+ +.|+|||.++.+.
T Consensus 285 vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHG---V---~vSPDGkylyVanklS-~tVSVIDv~k~k~ 355 (635)
T PRK02888 285 VKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHG---V---NTSPDGKYFIANGKLS-PTVTVIDVRKLDD 355 (635)
T ss_pred hhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccc---e---EECCCCCEEEEeCCCC-CcEEEEEChhhhh
Confidence 237799999999 789999999863221 2 222 44 699999999 9999999999764
No 23
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.83 E-value=5.7e-07 Score=78.13 Aligned_cols=141 Identities=13% Similarity=0.066 Sum_probs=101.3
Q ss_pred CCeEEEEeCCCCcEEEEeecCCCceEEEE--EE-eCCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCCCeeEEeeCCCEE
Q 023864 127 RSSVRRVALETGKVEAINQMEGSYFGEGL--TL-LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVL 203 (276)
Q Consensus 127 ~S~I~~iDl~tgkv~~~~~l~~~~FgEGi--t~-~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~~L 203 (276)
+..|..+|+++|+.+-+..+++. ++.+. ++ .++++|+.+ .++.++.+|++|.+++.++..+.+-......++..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPG-IGGPVATAVPDGGRVYVAS-GDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSS-CSSEEETEEEETTEEEEEE-TTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCC-CCCccceEEEeCCEEEEEc-CCCEEEEEECCCCCEEEEeeccccccceeeeccccc
Confidence 46799999999999999988431 33344 44 889999995 899999999999999999987521112246667777
Q ss_pred EEECCCceEEEEcCCCCcEEEEEEeee-CCEeeeeeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEEE
Q 023864 204 FGSDGSSMLYQIDPQTLKVIRKDIVRY-KGREVRNLNELEFIKGEVWANVWQVWPCIPYAYLQAFGSSL 271 (276)
Q Consensus 204 ~vSDGS~~L~viDp~t~~vi~~I~V~~-~g~pv~~lNELE~idG~lyANvw~s~d~I~vIDp~T~~v~l 271 (276)
|+..+++.|+.+|++|++++-++.-.. ...++...-...+.++.+|+... . ..|..+|++||+++-
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-g~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-S-GKLVALDPKTGKLLW 146 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-C-SEEEEEETTTTEEEE
T ss_pred ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec-c-CcEEEEecCCCcEEE
Confidence 776666699999999999987753322 11111112223344778888874 6 899999999987753
No 24
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.72 E-value=2.3e-06 Score=81.74 Aligned_cols=151 Identities=9% Similarity=0.058 Sum_probs=105.2
Q ss_pred EEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC----------CceEEEEEEeCCEEEEEEeeCCEEEEEeCCCC
Q 023864 111 LYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG----------SYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL 180 (276)
Q Consensus 111 ~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~----------~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tl 180 (276)
.+. +|++|..+. ...|..+|.+||+++=+.+++. ..+..|.++.++++|+.+ .++.++.+|++|.
T Consensus 66 vv~-~~~vy~~~~---~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~-~~g~l~ald~~tG 140 (394)
T PRK11138 66 AVA-YNKVYAADR---AGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGS-EKGQVYALNAEDG 140 (394)
T ss_pred EEE-CCEEEEECC---CCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEc-CCCEEEEEECCCC
Confidence 444 589998644 3589999999999887777664 133456888999999876 5678999999999
Q ss_pred cEEEEEecCCCCeeE-EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCCeE
Q 023864 181 NKLEEFTHQMKDGWG-LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWPCI 259 (276)
Q Consensus 181 k~i~~~~~~~~EGWG-LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d~I 259 (276)
+++-+++.+ ++.++ -.-.++.+|+..+...|+-+|++|++++=+..............--...+|.+|+.. .+ +.+
T Consensus 141 ~~~W~~~~~-~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~-~~-g~v 217 (394)
T PRK11138 141 EVAWQTKVA-GEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGG-DN-GRV 217 (394)
T ss_pred CCcccccCC-CceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEc-CC-CEE
Confidence 999988765 33333 122466888888888999999999999866654311000000000113467777755 35 789
Q ss_pred EEEeCCCCcE
Q 023864 260 PYAYLQAFGS 269 (276)
Q Consensus 260 ~vIDp~T~~v 269 (276)
..+|+++|+.
T Consensus 218 ~a~d~~~G~~ 227 (394)
T PRK11138 218 SAVLMEQGQL 227 (394)
T ss_pred EEEEccCChh
Confidence 9999998764
No 25
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.72 E-value=3.6e-06 Score=74.93 Aligned_cols=144 Identities=19% Similarity=0.235 Sum_probs=102.3
Q ss_pred CceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeCCEEEEEeCCCCcE
Q 023864 106 FTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNK 182 (276)
Q Consensus 106 FTQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~tlk~ 182 (276)
|.+|..|++ +|.||.+.- ....|+++|+++++. ..+.++. .-|+++. +++||++.. +...++|+++.+.
T Consensus 1 l~Egp~~d~~~g~l~~~D~--~~~~i~~~~~~~~~~-~~~~~~~---~~G~~~~~~~g~l~v~~~--~~~~~~d~~~g~~ 72 (246)
T PF08450_consen 1 LGEGPVWDPRDGRLYWVDI--PGGRIYRVDPDTGEV-EVIDLPG---PNGMAFDRPDGRLYVADS--GGIAVVDPDTGKV 72 (246)
T ss_dssp CEEEEEEETTTTEEEEEET--TTTEEEEEETTTTEE-EEEESSS---EEEEEEECTTSEEEEEET--TCEEEEETTTTEE
T ss_pred CCcceEEECCCCEEEEEEc--CCCEEEEEECCCCeE-EEEecCC---CceEEEEccCCEEEEEEc--CceEEEecCCCcE
Confidence 568999997 789998754 678999999999976 3456665 6688887 689998874 4445559888765
Q ss_pred EEEEec-----C--CCCeeEEeeCCCEEEEEC-CC--------ceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-C
Q 023864 183 LEEFTH-----Q--MKDGWGLATDGKVLFGSD-GS--------SMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-K 245 (276)
Q Consensus 183 i~~~~~-----~--~~EGWGLT~Dg~~L~vSD-GS--------~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-d 245 (276)
..-+.. + .+....+.+||. ||++| +. ..|+.+|+. .++..-. ..+..+|.|.+. |
T Consensus 73 ~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~------~~~~~pNGi~~s~d 144 (246)
T PF08450_consen 73 TVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA------DGLGFPNGIAFSPD 144 (246)
T ss_dssp EEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE------EEESSEEEEEEETT
T ss_pred EEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEe------cCcccccceEECCc
Confidence 443332 1 123344566766 99988 43 469999999 6543221 125688999998 3
Q ss_pred C-EEEEEeCCCCCeEEEEeCCC
Q 023864 246 G-EVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 246 G-~lyANvw~s~d~I~vIDp~T 266 (276)
| .||++.-.. ++|.++|+..
T Consensus 145 g~~lyv~ds~~-~~i~~~~~~~ 165 (246)
T PF08450_consen 145 GKTLYVADSFN-GRIWRFDLDA 165 (246)
T ss_dssp SSEEEEEETTT-TEEEEEEEET
T ss_pred chheeeccccc-ceeEEEeccc
Confidence 4 699999899 9999999964
No 26
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.63 E-value=1.8e-06 Score=82.71 Aligned_cols=159 Identities=16% Similarity=0.235 Sum_probs=104.9
Q ss_pred EEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEe--ecCCCceEEEEEEe--CCEEEEEEeeCCEEEEEeCCC----C
Q 023864 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN--QMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNN----L 180 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~--~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~t----l 180 (276)
=-.++||++....+-+ |.++|..||++.|++.... .+.+..=+-=|+++ ++-.|+++..+++|.|+..+. +
T Consensus 149 ~a~~tP~~~~l~v~DL-G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~ 227 (346)
T COG2706 149 SANFTPDGRYLVVPDL-GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKF 227 (346)
T ss_pred eeeeCCCCCEEEEeec-CCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceE
Confidence 3456788865555666 9999999999999875543 23332223346665 479999999999999977654 3
Q ss_pred cEEEEEec-C---CCCeeE----EeeCCCEEEEEC-CCceE--EEEcCCCCcEEEEEEeeeCCE-eeeeeeeeEEECCEE
Q 023864 181 NKLEEFTH-Q---MKDGWG----LATDGKVLFGSD-GSSML--YQIDPQTLKVIRKDIVRYKGR-EVRNLNELEFIKGEV 248 (276)
Q Consensus 181 k~i~~~~~-~---~~EGWG----LT~Dg~~L~vSD-GS~~L--~viDp~t~~vi~~I~V~~~g~-pv~~lNELE~idG~l 248 (276)
+.+.++.. | .+.-|+ +++||++||+|| |-|.| +-+|+.+.++.-.-.+...|+ |-. .| +...++.|
T Consensus 228 ~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~-F~-i~~~g~~L 305 (346)
T COG2706 228 EELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRD-FN-INPSGRFL 305 (346)
T ss_pred EEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCcc-ce-eCCCCCEE
Confidence 44444431 1 245565 889999999999 76655 567999887533222223444 322 11 12335578
Q ss_pred EEEeCCCCC--eEEEEeCCCCcEEE
Q 023864 249 WANVWQVWP--CIPYAYLQAFGSSL 271 (276)
Q Consensus 249 yANvw~s~d--~I~vIDp~T~~v~l 271 (276)
+|+.=.+ | .|..||++||+..+
T Consensus 306 iaa~q~s-d~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 306 IAANQKS-DNITVFERDKETGRLTL 329 (346)
T ss_pred EEEccCC-CcEEEEEEcCCCceEEe
Confidence 8888677 6 45679999988654
No 27
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.58 E-value=2.2e-05 Score=65.72 Aligned_cols=155 Identities=14% Similarity=0.121 Sum_probs=108.3
Q ss_pred CceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCCcEEE
Q 023864 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLE 184 (276)
Q Consensus 106 FTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tlk~i~ 184 (276)
....+.+++++.++.+++ .+..|..||+.+++......... -....+.+.. ++++...-.++.+.+||..+.+.+.
T Consensus 95 ~i~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~ 171 (289)
T cd00200 95 YVSSVAFSPDGRILSSSS--RDKTIKVWDVETGKCLTTLRGHT-DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA 171 (289)
T ss_pred cEEEEEEcCCCCEEEEec--CCCeEEEEECCCcEEEEEeccCC-CcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccce
Confidence 457899998877776655 57899999999888776655222 1234566665 3444444459999999999998888
Q ss_pred EEecCC--CCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEEC-CEEEEEeCCCCCeEEE
Q 023864 185 EFTHQM--KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK-GEVWANVWQVWPCIPY 261 (276)
Q Consensus 185 ~~~~~~--~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~id-G~lyANvw~s~d~I~v 261 (276)
.+.... -....+.++++.++++.....|.++|..+.+.+..+.... . .++-+.+.+ +.+++..-.. +.|.+
T Consensus 172 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~---~i~~~~~~~~~~~~~~~~~~-~~i~i 245 (289)
T cd00200 172 TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE--N---GVNSVAFSPDGYLLASGSED-GTIRV 245 (289)
T ss_pred eEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC--C---ceEEEEEcCCCcEEEEEcCC-CcEEE
Confidence 886431 2334466788889888878999999999988877664322 1 344455665 5666655456 88999
Q ss_pred EeCCCCcE
Q 023864 262 AYLQAFGS 269 (276)
Q Consensus 262 IDp~T~~v 269 (276)
.|..+++.
T Consensus 246 ~~~~~~~~ 253 (289)
T cd00200 246 WDLRTGEC 253 (289)
T ss_pred EEcCCcee
Confidence 99987543
No 28
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.36 E-value=0.00012 Score=61.27 Aligned_cols=155 Identities=16% Similarity=0.101 Sum_probs=101.6
Q ss_pred CCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-C-EEEEEEeeCCEEEEEeCCCCcE
Q 023864 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-E-KLFQVTWLQKTGFIYDQNNLNK 182 (276)
Q Consensus 105 aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~-~LyqlTwk~~~v~V~D~~tlk~ 182 (276)
.-...+.+++++.++.+++ .+..|..||+++++............ ..+.... + .++... .++.+.+||..+.+.
T Consensus 10 ~~i~~~~~~~~~~~l~~~~--~~g~i~i~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~-~~~~i~i~~~~~~~~ 85 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGS--GDGTIKVWDLETGELLRTLKGHTGPV-RDVAASADGTYLASGS-SDKTIRLWDLETGEC 85 (289)
T ss_pred CCEEEEEEcCCCCEEEEee--cCcEEEEEEeeCCCcEEEEecCCcce-eEEEECCCCCEEEEEc-CCCeEEEEEcCcccc
Confidence 3457999999877666555 57899999999988666554433322 2455543 3 454444 589999999999888
Q ss_pred EEEEecCCCCeeE--EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEEC-CEEEEEeCCCCCeE
Q 023864 183 LEEFTHQMKDGWG--LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK-GEVWANVWQVWPCI 259 (276)
Q Consensus 183 i~~~~~~~~EGWG--LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~id-G~lyANvw~s~d~I 259 (276)
+.++......-.. +.++++.++.+.....|.++|..+.+.+..+.... ..++.+.+.. +.+.+..-.. +.|
T Consensus 86 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~~-~~i 159 (289)
T cd00200 86 VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHT-----DWVNSVAFSPDGTFVASSSQD-GTI 159 (289)
T ss_pred eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCC-----CcEEEEEEcCcCCEEEEEcCC-CcE
Confidence 8777643122333 44565666555558899999999888777766221 1344555654 4444444345 789
Q ss_pred EEEeCCCCcE
Q 023864 260 PYAYLQAFGS 269 (276)
Q Consensus 260 ~vIDp~T~~v 269 (276)
.+.|.++++.
T Consensus 160 ~i~d~~~~~~ 169 (289)
T cd00200 160 KLWDLRTGKC 169 (289)
T ss_pred EEEEcccccc
Confidence 9999887553
No 29
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.34 E-value=4.9e-05 Score=71.72 Aligned_cols=142 Identities=12% Similarity=0.080 Sum_probs=98.8
Q ss_pred CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCC----------ceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEE
Q 023864 116 DTLFESTGLYGRSSVRRVALETGKVEAINQMEGS----------YFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEE 185 (276)
Q Consensus 116 g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~----------~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~ 185 (276)
+.+|.++ ....+..+|+++|+++-+..++.. .+.....+.++++|+.++ ++.++.+|+++.+++-+
T Consensus 191 ~~v~~~~---~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~-~g~l~a~d~~tG~~~W~ 266 (377)
T TIGR03300 191 GGVLVGF---AGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY-QGRVAALDLRSGRVLWK 266 (377)
T ss_pred CEEEEEC---CCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc-CCEEEEEECCCCcEEEe
Confidence 5666433 345899999999988765443211 011123456899999886 67899999999999887
Q ss_pred EecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEE-EeeeCCEeeeeeeeeEEECCEEEEEeCCCCCeEEEEeC
Q 023864 186 FTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKD-IVRYKGREVRNLNELEFIKGEVWANVWQVWPCIPYAYL 264 (276)
Q Consensus 186 ~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I-~V~~~g~pv~~lNELE~idG~lyANvw~s~d~I~vIDp 264 (276)
.+.. ....+..+++.+|+.+....|+.+|+.+++++-+. ... +.....+ ...+++||+.. .+ ..|.++|+
T Consensus 267 ~~~~--~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~--~~~~ssp---~i~g~~l~~~~-~~-G~l~~~d~ 337 (377)
T TIGR03300 267 RDAS--SYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELK--YRQLTAP---AVVGGYLVVGD-FE-GYLHWLSR 337 (377)
T ss_pred eccC--CccCceEeCCEEEEECCCCeEEEEECCCCcEEEcccccc--CCccccC---EEECCEEEEEe-CC-CEEEEEEC
Confidence 7643 22345567899999988899999999999887544 222 1222222 24688999876 56 88999999
Q ss_pred CCCcEE
Q 023864 265 QAFGSS 270 (276)
Q Consensus 265 ~T~~v~ 270 (276)
++|++.
T Consensus 338 ~tG~~~ 343 (377)
T TIGR03300 338 EDGSFV 343 (377)
T ss_pred CCCCEE
Confidence 997654
No 30
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.32 E-value=2.8e-05 Score=73.69 Aligned_cols=162 Identities=17% Similarity=0.240 Sum_probs=104.6
Q ss_pred EEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEe-e----cCCCceEEEEEEeCCEEEEEEee--
Q 023864 96 VNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN-Q----MEGSYFGEGLTLLGEKLFQVTWL-- 168 (276)
Q Consensus 96 v~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~-~----l~~~~FgEGit~~g~~LyqlTwk-- 168 (276)
.+.+++ +..|+.|+.++.+|.|+.+- ..++.+|++++..+..+ . .+...+=.|..--.+++|.-|-.
T Consensus 59 ~~~~~~-p~~~~~~~~~d~~g~Lv~~~-----~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~ 132 (307)
T COG3386 59 KRVFPS-PGGFSSGALIDAGGRLIACE-----HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYF 132 (307)
T ss_pred eEEEEC-CCCcccceeecCCCeEEEEc-----cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCcc
Confidence 455665 77888999999878887642 35667777777663322 1 22244445555556788887766
Q ss_pred ---------CCEEEEEeCCCCcEEEEEe--cCCCCeeEEeeCCCEEEEEC-CCceEEEEcCC--CCcEEEEE-Eeee---
Q 023864 169 ---------QKTGFIYDQNNLNKLEEFT--HQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQ--TLKVIRKD-IVRY--- 230 (276)
Q Consensus 169 ---------~~~v~V~D~~tlk~i~~~~--~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~--t~~vi~~I-~V~~--- 230 (276)
.+.++.+|+. .++++-+. +..+.|.++++||+.||++| ..++|+.+|-. ++.+-.+. .|..
T Consensus 133 ~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~ 211 (307)
T COG3386 133 DLGKSEERPTGSLYRVDPD-GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEE 211 (307)
T ss_pred ccCccccCCcceEEEEcCC-CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCC
Confidence 3568889974 33333221 22358999999999999999 57999998654 44443321 1211
Q ss_pred CCEeeeeeeeeEEE-CCEEE-EEeCCCCCeEEEEeCCCCcEE
Q 023864 231 KGREVRNLNELEFI-KGEVW-ANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 231 ~g~pv~~lNELE~i-dG~ly-ANvw~s~d~I~vIDp~T~~v~ 270 (276)
.|.|=. |..+ +|.|| +.+|.. ..|.+++|+ |+.+
T Consensus 212 ~G~PDG----~~vDadG~lw~~a~~~g-~~v~~~~pd-G~l~ 247 (307)
T COG3386 212 PGLPDG----MAVDADGNLWVAAVWGG-GRVVRFNPD-GKLL 247 (307)
T ss_pred CCCCCc----eEEeCCCCEEEecccCC-ceEEEECCC-CcEE
Confidence 233321 2232 78899 888887 899999999 6654
No 31
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.30 E-value=5.3e-05 Score=72.46 Aligned_cols=137 Identities=9% Similarity=0.069 Sum_probs=97.2
Q ss_pred CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCCCee
Q 023864 115 NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGW 194 (276)
Q Consensus 115 dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~EGW 194 (276)
++++|..+. +..+..+|+++|+++=+.+++.. ..+++.+++||+.+. ++.++.+|+++.+++-+.+......+
T Consensus 256 ~~~vy~~~~---~g~l~ald~~tG~~~W~~~~~~~---~~~~~~~~~vy~~~~-~g~l~ald~~tG~~~W~~~~~~~~~~ 328 (394)
T PRK11138 256 GGVVYALAY---NGNLVALDLRSGQIVWKREYGSV---NDFAVDGGRIYLVDQ-NDRVYALDTRGGVELWSQSDLLHRLL 328 (394)
T ss_pred CCEEEEEEc---CCeEEEEECCCCCEEEeecCCCc---cCcEEECCEEEEEcC-CCeEEEEECCCCcEEEcccccCCCcc
Confidence 578887543 46899999999998776665531 246778999999884 68999999999998776543211112
Q ss_pred E-EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCCeEEEEeC
Q 023864 195 G-LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWPCIPYAYL 264 (276)
Q Consensus 195 G-LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d~I~vIDp 264 (276)
. ..-.+..||+.+.+..|+.+|++|++++.+..+...+.. ....+.+|+||+-. .+ ..|..|++
T Consensus 329 ~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~----s~P~~~~~~l~v~t-~~-G~l~~~~~ 393 (394)
T PRK11138 329 TAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFL----SEPVVADDKLLIQA-RD-GTVYAITR 393 (394)
T ss_pred cCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcce----eCCEEECCEEEEEe-CC-ceEEEEeC
Confidence 2 122467889988888999999999999998888532221 12236788999875 34 57777764
No 32
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.17 E-value=0.00021 Score=69.69 Aligned_cols=158 Identities=14% Similarity=0.102 Sum_probs=97.4
Q ss_pred CceEEEEecCCE-E-EEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC--EEEEEeCCCCc
Q 023864 106 FTQGLLYAENDT-L-FESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLN 181 (276)
Q Consensus 106 FTQGL~~~~dg~-L-yeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~--~v~V~D~~tlk 181 (276)
+.....|+|||+ | |.+.. -+...|..+|+++|+......++.....--...+|++|+.+..+++ .++++|.++.+
T Consensus 200 ~~~~p~wSPDG~~la~~s~~-~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~ 278 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTFE-SGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ 278 (429)
T ss_pred ceeeeEEcCCCCEEEEEEec-CCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 445789999985 4 44432 3678899999999986554455544333334446778888766655 59999998876
Q ss_pred EEEEEecC-CCCeeEEeeCCCEE-EEEC--CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCE-E-EEEeCC
Q 023864 182 KLEEFTHQ-MKDGWGLATDGKVL-FGSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE-V-WANVWQ 254 (276)
Q Consensus 182 ~i~~~~~~-~~EGWGLT~Dg~~L-~vSD--GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~-l-yANvw~ 254 (276)
...-.... .-.....++||+.| |+|| |..+|+.+|+++.+.. ++.. .+... ....+. ||+ | |++...
T Consensus 279 ~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~--~~~~~---~~~~~SpDG~~Ia~~~~~~ 352 (429)
T PRK03629 279 IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW--EGSQN---QDADVSSDGKFMVMVSSNG 352 (429)
T ss_pred EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec--CCCCc---cCEEECCCCCEEEEEEccC
Confidence 53322211 11234578999976 6787 5679999999987653 3322 22211 112232 554 4 444332
Q ss_pred CCCeEEEEeCCCCcEE
Q 023864 255 VWPCIPYAYLQAFGSS 270 (276)
Q Consensus 255 s~d~I~vIDp~T~~v~ 270 (276)
....|.++|+++++..
T Consensus 353 g~~~I~~~dl~~g~~~ 368 (429)
T PRK03629 353 GQQHIAKQDLATGGVQ 368 (429)
T ss_pred CCceEEEEECCCCCeE
Confidence 2146899999987643
No 33
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.16 E-value=0.0002 Score=66.07 Aligned_cols=158 Identities=18% Similarity=0.208 Sum_probs=98.6
Q ss_pred ceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEe-eCCEEEEEeCC--CC--
Q 023864 107 TQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW-LQKTGFIYDQN--NL-- 180 (276)
Q Consensus 107 TQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTw-k~~~v~V~D~~--tl-- 180 (276)
.-||+|++| ++||.-++ +...|..+|+ +|++++++++...-=.|||+..++..|+++- +.+.+++++.. +.
T Consensus 24 ~SGLTy~pd~~tLfaV~d--~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQD--EPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp EEEEEEETTTTEEEEEET--TTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred ccccEEcCCCCeEEEEEC--CCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence 689999987 78998887 7899999998 5999999998863225999999876666655 58889888772 21
Q ss_pred c--EEEEEecC-------CCCeeEEeeCCCEEEEEC-C-CceEEEEcC--CCC--cEEEEEEeeeCCEeeeeeeeeEEE-
Q 023864 181 N--KLEEFTHQ-------MKDGWGLATDGKVLFGSD-G-SSMLYQIDP--QTL--KVIRKDIVRYKGREVRNLNELEFI- 244 (276)
Q Consensus 181 k--~i~~~~~~-------~~EGWGLT~Dg~~L~vSD-G-S~~L~viDp--~t~--~vi~~I~V~~~g~pv~~lNELE~i- 244 (276)
. ...+++.+ .-||.+..+.+++||+.- . -..|+-++. ..+ .+.....+...+..+..+-.+.+.
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p 180 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDP 180 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEET
T ss_pred chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcC
Confidence 1 12334422 127777777788999876 3 336788874 222 233232333344555667777777
Q ss_pred -CCEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 245 -KGEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 245 -dG~lyANvw~s~d~I~vIDp~T~~v 269 (276)
.|.+|+=--.+ ..|+++| .+|++
T Consensus 181 ~t~~lliLS~es-~~l~~~d-~~G~~ 204 (248)
T PF06977_consen 181 RTGHLLILSDES-RLLLELD-RQGRV 204 (248)
T ss_dssp TTTEEEEEETTT-TEEEEE--TT--E
T ss_pred CCCeEEEEECCC-CeEEEEC-CCCCE
Confidence 46899888788 9999999 55453
No 34
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.16 E-value=0.00016 Score=69.55 Aligned_cols=174 Identities=16% Similarity=0.144 Sum_probs=111.5
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCC-CcEEEEee----cC---------CCceEEEEE
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALET-GKVEAINQ----ME---------GSYFGEGLT 156 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~t-gkv~~~~~----l~---------~~~FgEGit 156 (276)
..+.++..+.+..+ +--+.++++|+ ||+ ..|...+|+++-+.+ |.+...+. .+ ++.-...+|
T Consensus 77 ~Lt~ln~~~~~g~~-p~yvsvd~~g~~vf~--AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~t 153 (346)
T COG2706 77 RLTFLNRQTLPGSP-PCYVSVDEDGRFVFV--ANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFT 153 (346)
T ss_pred eEEEeeccccCCCC-CeEEEECCCCCEEEE--EEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeC
Confidence 44566666553222 24588898886 553 369999999999855 65433221 11 124557899
Q ss_pred EeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCCCeeE-----EeeCCCEEEEECC-CceEEEE--cCCC--CcEEEEE
Q 023864 157 LLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWG-----LATDGKVLFGSDG-SSMLYQI--DPQT--LKVIRKD 226 (276)
Q Consensus 157 ~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~EGWG-----LT~Dg~~L~vSDG-S~~L~vi--Dp~t--~~vi~~I 226 (276)
.+++.|++..-..+++++||.+..+....-+...++|.| +.|+|+..|+-+- +++|.++ |+.. ++.+.+|
T Consensus 154 P~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i 233 (346)
T COG2706 154 PDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTI 233 (346)
T ss_pred CCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeee
Confidence 999999999999999999999976665443332234544 8899999999774 7766665 5543 3334444
Q ss_pred Eeee---CCEeeeeeeeeEEE-CC-EEEEEeCCCCCeEE--EEeCCCCcEEE
Q 023864 227 IVRY---KGREVRNLNELEFI-KG-EVWANVWQVWPCIP--YAYLQAFGSSL 271 (276)
Q Consensus 227 ~V~~---~g~pv~~lNELE~i-dG-~lyANvw~s~d~I~--vIDp~T~~v~l 271 (276)
.+-. .|.. ..-++-.. || +|||.+-.- |.|+ .||+.+|+..+
T Consensus 234 ~tlP~dF~g~~--~~aaIhis~dGrFLYasNRg~-dsI~~f~V~~~~g~L~~ 282 (346)
T COG2706 234 DTLPEDFTGTN--WAAAIHISPDGRFLYASNRGH-DSIAVFSVDPDGGKLEL 282 (346)
T ss_pred ccCccccCCCC--ceeEEEECCCCCEEEEecCCC-CeEEEEEEcCCCCEEEE
Confidence 4422 1111 11122222 66 599999888 8665 58999977444
No 35
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.15 E-value=0.00022 Score=67.60 Aligned_cols=156 Identities=19% Similarity=0.159 Sum_probs=92.4
Q ss_pred CceEEEEecCCE-E-EEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeC--CEEEEEeCCCCc
Q 023864 106 FTQGLLYAENDT-L-FESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLN 181 (276)
Q Consensus 106 FTQGL~~~~dg~-L-yeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~--~~v~V~D~~tlk 181 (276)
.+....+++||+ | |.+.+ -+...|.++|+++|+.......+...++-.+..++++|+.....+ ..++++|.++.+
T Consensus 191 ~~~~p~~Spdg~~la~~~~~-~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~ 269 (417)
T TIGR02800 191 PILSPAWSPDGQKLAYVSFE-SGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ 269 (417)
T ss_pred ceecccCCCCCCEEEEEEcC-CCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC
Confidence 344667889875 4 33322 245789999999997765555554445444555667787665544 369999998765
Q ss_pred EEEEEecCC-CCeeEEeeCCCEE-EEEC--CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCE-EEEEeCCC
Q 023864 182 KLEEFTHQM-KDGWGLATDGKVL-FGSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE-VWANVWQV 255 (276)
Q Consensus 182 ~i~~~~~~~-~EGWGLT~Dg~~L-~vSD--GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~-lyANvw~s 255 (276)
...-..... ...-..++||++| +.+| |...|+++|.++.+.. ++... +.. .....+. ||+ |+... ..
T Consensus 270 ~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~--~~~---~~~~~~spdg~~i~~~~-~~ 342 (417)
T TIGR02800 270 LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFR--GGY---NASPSWSPDGDLIAFVH-RE 342 (417)
T ss_pred EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC--CCC---ccCeEECCCCCEEEEEE-cc
Confidence 432222111 1122457899877 4566 5679999999887753 33322 211 1122333 554 44332 22
Q ss_pred --CCeEEEEeCCCCcE
Q 023864 256 --WPCIPYAYLQAFGS 269 (276)
Q Consensus 256 --~d~I~vIDp~T~~v 269 (276)
...|.++|++++..
T Consensus 343 ~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 343 GGGFNIAVMDLDGGGE 358 (417)
T ss_pred CCceEEEEEeCCCCCe
Confidence 02899999988654
No 36
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.10 E-value=4.5e-05 Score=73.37 Aligned_cols=114 Identities=17% Similarity=0.194 Sum_probs=82.5
Q ss_pred CEEEEEEe----eCCEEEEEeCCCCcEEEEEecCCCCeeEEeeCCCEEEEEC-----C-----CceEEEEcCCCCcEEEE
Q 023864 160 EKLFQVTW----LQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSD-----G-----SSMLYQIDPQTLKVIRK 225 (276)
Q Consensus 160 ~~LyqlTw----k~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~~L~vSD-----G-----S~~L~viDp~t~~vi~~ 225 (276)
.|+|++.- -.++++|||.++.+.++.++.+.--+..+++||+.+|+.+ | ++-|.++|++|++.+++
T Consensus 3 ~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~E 82 (342)
T PF06433_consen 3 HRVYVQDPVFFHMTSRVYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGE 82 (342)
T ss_dssp TEEEEEE-GGGGSSEEEEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEE
T ss_pred cEEEEECCccccccceEEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccce
Confidence 57787776 2369999999999999999976445677999999999865 2 78999999999999999
Q ss_pred EEeeeCCEe--eeeeeeeEEE-CC-EEE-EEeCCCCCeEEEEeCCCCcEEEEEEe
Q 023864 226 DIVRYKGRE--VRNLNELEFI-KG-EVW-ANVWQVWPCIPYAYLQAFGSSLVYVT 275 (276)
Q Consensus 226 I~V~~~g~p--v~~lNELE~i-dG-~ly-ANvw~s~d~I~vIDp~T~~v~l~~~~ 275 (276)
|..-...+. ....|-+... || ++| .|.=.. ..|.|||.+.+++ +.+|.
T Consensus 83 I~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa-~SVtVVDl~~~kv-v~ei~ 135 (342)
T PF06433_consen 83 IEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPA-TSVTVVDLAAKKV-VGEID 135 (342)
T ss_dssp EEETTS-B--BS--GGGEEE-TTSSEEEEEEESSS-EEEEEEETTTTEE-EEEEE
T ss_pred EecCCcchheecccccceEEccCCcEEEEEccCCC-CeEEEEECCCCce-eeeec
Confidence 999754232 2233434443 44 577 555556 8999999999555 56663
No 37
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.09 E-value=0.00011 Score=69.70 Aligned_cols=141 Identities=18% Similarity=0.206 Sum_probs=100.9
Q ss_pred EEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC--CceEEEEEEeCCEEEEEEee-----CCEEEEEeCC-CC
Q 023864 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG--SYFGEGLTLLGEKLFQVTWL-----QKTGFIYDQN-NL 180 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~--~~FgEGit~~g~~LyqlTwk-----~~~v~V~D~~-tl 180 (276)
|++.+|++...+.-++.=.....++|..+|++.+.+.-++ ++||-|+--.++++.-.|.. .+.+-|||.+ ++
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 6777775433333445556778899999999988875554 68998887765444444543 4788999998 99
Q ss_pred cEEEEEecCCCCeeE-----EeeCCCEEEEECC---Cc---------------eEEEEcCCCCcEEEEEEee--eCCEee
Q 023864 181 NKLEEFTHQMKDGWG-----LATDGKVLFGSDG---SS---------------MLYQIDPQTLKVIRKDIVR--YKGREV 235 (276)
Q Consensus 181 k~i~~~~~~~~EGWG-----LT~Dg~~L~vSDG---S~---------------~L~viDp~t~~vi~~I~V~--~~g~pv 235 (276)
+.+++|+. .|.| +.+||+.|+|.|| +. .|..+|+.+++++.+.... +....+
T Consensus 89 ~ri~E~~s---~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 89 RRIGEFPS---HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred EEEeEecC---CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 99999985 3555 6899999999996 22 7899999999999998883 333345
Q ss_pred eeeeeeEEE-CCEEE-EEeCCC
Q 023864 236 RNLNELEFI-KGEVW-ANVWQV 255 (276)
Q Consensus 236 ~~lNELE~i-dG~ly-ANvw~s 255 (276)
.+|- +. +|.++ +--|+-
T Consensus 166 RHLa---~~~~G~V~~a~Q~qg 184 (305)
T PF07433_consen 166 RHLA---VDGDGTVAFAMQYQG 184 (305)
T ss_pred eeEE---ecCCCcEEEEEecCC
Confidence 5552 33 56655 666664
No 38
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.06 E-value=8.7e-05 Score=70.06 Aligned_cols=160 Identities=17% Similarity=0.102 Sum_probs=108.1
Q ss_pred EEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC--CceEEEEEEe-CCEEEEEEeeCCEE
Q 023864 96 VNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG--SYFGEGLTLL-GEKLFQVTWLQKTG 172 (276)
Q Consensus 96 v~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~--~~FgEGit~~-g~~LyqlTwk~~~v 172 (276)
.++||.+...=+.-+..++||.+|. |++ |...|-++|+.||++ .+++|+. ++| ||.+. ++-.|++.--. -+
T Consensus 53 ~~~fpvp~G~ap~dvapapdG~VWf-t~q-g~gaiGhLdP~tGev-~~ypLg~Ga~Ph--giv~gpdg~~Witd~~~-aI 126 (353)
T COG4257 53 SAEFPVPNGSAPFDVAPAPDGAVWF-TAQ-GTGAIGHLDPATGEV-ETYPLGSGASPH--GIVVGPDGSAWITDTGL-AI 126 (353)
T ss_pred cceeccCCCCCccccccCCCCceEE-ecC-ccccceecCCCCCce-EEEecCCCCCCc--eEEECCCCCeeEecCcc-ee
Confidence 4678887776666889999998776 443 888999999999998 5678885 556 55554 35677776444 77
Q ss_pred EEEeCCCCcEEEEEecCCCCeeE-E---eeCC-CEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEE-ECC
Q 023864 173 FIYDQNNLNKLEEFTHQMKDGWG-L---ATDG-KVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF-IKG 246 (276)
Q Consensus 173 ~V~D~~tlk~i~~~~~~~~EGWG-L---T~Dg-~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~-idG 246 (276)
-.+|++|++. ++|+.+...+.+ | .-|+ ..||.+-....---+||.+. +++...+-.++.|.. +.. -||
T Consensus 127 ~R~dpkt~ev-t~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~-~i~vfpaPqG~gpyG----i~atpdG 200 (353)
T COG4257 127 GRLDPKTLEV-TRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARN-VISVFPAPQGGGPYG----ICATPDG 200 (353)
T ss_pred EEecCcccce-EEeecccccCCCcccceeeCCCccEEEeeccccceecCcccC-ceeeeccCCCCCCcc----eEECCCC
Confidence 7899999987 567655222222 2 1122 35666543333346898876 444455544444433 222 389
Q ss_pred EEEEEeCCCCCeEEEEeCCCCc
Q 023864 247 EVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 247 ~lyANvw~s~d~I~vIDp~T~~ 268 (276)
+||..-.+. |.|.+|||.++.
T Consensus 201 svwyaslag-naiaridp~~~~ 221 (353)
T COG4257 201 SVWYASLAG-NAIARIDPFAGH 221 (353)
T ss_pred cEEEEeccc-cceEEcccccCC
Confidence 999999899 999999999974
No 39
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.05 E-value=0.00051 Score=67.73 Aligned_cols=166 Identities=13% Similarity=0.086 Sum_probs=116.3
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTG 172 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v 172 (276)
..++++. +...+.-.+.|+++|+++.|++ ++..|++||.++|+.....+.-.. .--++++.. ++++...-+++.+
T Consensus 237 ~~~~~l~-gH~~~v~~~~f~p~g~~i~Sgs--~D~tvriWd~~~~~~~~~l~~hs~-~is~~~f~~d~~~l~s~s~d~~i 312 (456)
T KOG0266|consen 237 RNLKTLK-GHSTYVTSVAFSPDGNLLVSGS--DDGTVRIWDVRTGECVRKLKGHSD-GISGLAFSPDGNLLVSASYDGTI 312 (456)
T ss_pred eEEEEec-CCCCceEEEEecCCCCEEEEec--CCCcEEEEeccCCeEEEeeeccCC-ceEEEEECCCCCEEEEcCCCccE
Confidence 5566664 3477778999999999999888 899999999999999888765543 334555543 4444444569999
Q ss_pred EEEeCCCCc--EEEEEecC-CC---CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCC-Eee-eeeeeeEEE
Q 023864 173 FIYDQNNLN--KLEEFTHQ-MK---DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKG-REV-RNLNELEFI 244 (276)
Q Consensus 173 ~V~D~~tlk--~i~~~~~~-~~---EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g-~pv-~~lNELE~i 244 (276)
.+||..+.+ .++++.-. .+ --.-.+++|++|++.-....|..+|..+.+..+......++ ..+ .... ..
T Consensus 313 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~---~~ 389 (456)
T KOG0266|consen 313 RVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTL---ST 389 (456)
T ss_pred EEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccc---cC
Confidence 999999999 44655422 11 11226789999999888889999999999888877765544 111 1111 22
Q ss_pred CCE-EEEEeCCCCCeEEEEeCCCCc
Q 023864 245 KGE-VWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 245 dG~-lyANvw~s~d~I~vIDp~T~~ 268 (276)
+|+ ++... .. ..|.+-|+.++.
T Consensus 390 ~~~~i~sg~-~d-~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 390 GGKLIYSGS-ED-GSVYVWDSSSGG 412 (456)
T ss_pred CCCeEEEEe-CC-ceEEEEeCCccc
Confidence 554 44443 45 789999999844
No 40
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.05 E-value=0.00043 Score=68.11 Aligned_cols=154 Identities=16% Similarity=0.112 Sum_probs=93.8
Q ss_pred EEEEecCCE-E-EEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC--EEEEEeCCCCcEEE
Q 023864 109 GLLYAENDT-L-FESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLNKLE 184 (276)
Q Consensus 109 GL~~~~dg~-L-yeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~--~v~V~D~~tlk~i~ 184 (276)
...|+|||+ | |.+.. .|...|.++|+++|+.......+...+.-....+|++|+....+++ .++++|.++.+..
T Consensus 222 ~p~wSPDG~~La~~s~~-~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~- 299 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFE-NRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT- 299 (448)
T ss_pred CceECCCCCEEEEEEec-CCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-
Confidence 578999975 4 44432 3678899999999986544444443333344556778877666665 5899999877643
Q ss_pred EEecC--CCCeeEEeeCCCEEEE-EC--CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC-EEE-EEeCCCC
Q 023864 185 EFTHQ--MKDGWGLATDGKVLFG-SD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVW-ANVWQVW 256 (276)
Q Consensus 185 ~~~~~--~~EGWGLT~Dg~~L~v-SD--GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG-~ly-ANvw~s~ 256 (276)
++... ....-..++||++|++ ++ |..+|+.+|+++.+.. ++.. ++... ....+. || +|+ ++.-...
T Consensus 300 ~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~--~g~~~---~~~~~SpDG~~l~~~~~~~g~ 373 (448)
T PRK04792 300 RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-RLTF--EGEQN---LGGSITPDGRSMIMVNRTNGK 373 (448)
T ss_pred ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EEec--CCCCC---cCeeECCCCCEEEEEEecCCc
Confidence 33211 1122346789998755 65 6789999999988754 3332 22111 112233 55 454 3332211
Q ss_pred CeEEEEeCCCCcEE
Q 023864 257 PCIPYAYLQAFGSS 270 (276)
Q Consensus 257 d~I~vIDp~T~~v~ 270 (276)
..|.++|+++++..
T Consensus 374 ~~I~~~dl~~g~~~ 387 (448)
T PRK04792 374 FNIARQDLETGAMQ 387 (448)
T ss_pred eEEEEEECCCCCeE
Confidence 47899999997653
No 41
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.04 E-value=0.0005 Score=66.84 Aligned_cols=156 Identities=19% Similarity=0.211 Sum_probs=92.7
Q ss_pred CceEEEEecCCE-E-EEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeC--CEEEEEeCCCCc
Q 023864 106 FTQGLLYAENDT-L-FESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLN 181 (276)
Q Consensus 106 FTQGL~~~~dg~-L-yeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~--~~v~V~D~~tlk 181 (276)
..-...|+|||+ | |.+ ...|...|..+|+++|+...-...+....+-....+|++|+...-++ ..++++|.++.+
T Consensus 203 ~v~~p~wSpDG~~lay~s-~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~ 281 (435)
T PRK05137 203 LVLTPRFSPNRQEITYMS-YANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT 281 (435)
T ss_pred CeEeeEECCCCCEEEEEE-ecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc
Confidence 445688999975 4 444 22367899999999998654434443333333445577776554443 458999998866
Q ss_pred EEEEEecC--CCCeeEEeeCCCEE-EEEC--CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC-EE-EEEeC
Q 023864 182 KLEEFTHQ--MKDGWGLATDGKVL-FGSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EV-WANVW 253 (276)
Q Consensus 182 ~i~~~~~~--~~EGWGLT~Dg~~L-~vSD--GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG-~l-yANvw 253 (276)
. .++... ....-..++||++| |+|| |..+|+++|.++.++. ++.-.. + ..+...|. || +| |+...
T Consensus 282 ~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~-~----~~~~~~~SpdG~~ia~~~~~ 354 (435)
T PRK05137 282 T-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGG-G----RYSTPVWSPRGDLIAFTKQG 354 (435)
T ss_pred e-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCC-C----cccCeEECCCCCEEEEEEcC
Confidence 5 333321 01123467899876 5576 5779999998876653 343221 1 12223343 55 44 44432
Q ss_pred CCCCeEEEEeCCCCcE
Q 023864 254 QVWPCIPYAYLQAFGS 269 (276)
Q Consensus 254 ~s~d~I~vIDp~T~~v 269 (276)
.....|.++|++++.+
T Consensus 355 ~~~~~i~~~d~~~~~~ 370 (435)
T PRK05137 355 GGQFSIGVMKPDGSGE 370 (435)
T ss_pred CCceEEEEEECCCCce
Confidence 2214799999877554
No 42
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.0012 Score=62.69 Aligned_cols=173 Identities=16% Similarity=0.115 Sum_probs=119.1
Q ss_pred eeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeC
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQ 169 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~ 169 (276)
++=+-|+.+|- .+.-+-.|..+|-+-.|.|++ -+.+|+.||+.+-+-.....+..++- +|.+. +-+|.+--.+
T Consensus 88 ~dNkylRYF~G-H~~~V~sL~~sP~~d~FlS~S--~D~tvrLWDlR~~~cqg~l~~~~~pi---~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 88 HDNKYLRYFPG-HKKRVNSLSVSPKDDTFLSSS--LDKTVRLWDLRVKKCQGLLNLSGRPI---AAFDPEGLIFALANGS 161 (311)
T ss_pred ecCceEEEcCC-CCceEEEEEecCCCCeEEecc--cCCeEEeeEecCCCCceEEecCCCcc---eeECCCCcEEEEecCC
Confidence 44467777873 567778999999777888888 67799999999766545555555533 34443 6778888888
Q ss_pred CEEEEEeCCCC--cEEEEEecC--CC---CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeE
Q 023864 170 KTGFIYDQNNL--NKLEEFTHQ--MK---DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELE 242 (276)
Q Consensus 170 ~~v~V~D~~tl--k~i~~~~~~--~~---EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE 242 (276)
+.+.+||...+ .+..+|.++ .. ++.-+++|||.+.+|...+.++++|+=+++++.+.....++..+. -|..
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~--~~a~ 239 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLP--LSAT 239 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcc--eeEE
Confidence 89999999877 355666654 11 233489999999999999999999999999988888865443222 1222
Q ss_pred E-ECCEEEEEeCCCCCeEEEEeCCCCcEEEE
Q 023864 243 F-IKGEVWANVWQVWPCIPYAYLQAFGSSLV 272 (276)
Q Consensus 243 ~-idG~lyANvw~s~d~I~vIDp~T~~v~l~ 272 (276)
+ -||+-....-.. .+|.+=+.+||..+..
T Consensus 240 ftPds~Fvl~gs~d-g~i~vw~~~tg~~v~~ 269 (311)
T KOG1446|consen 240 FTPDSKFVLSGSDD-GTIHVWNLETGKKVAV 269 (311)
T ss_pred ECCCCcEEEEecCC-CcEEEEEcCCCcEeeE
Confidence 3 255433333333 5666666666665543
No 43
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.96 E-value=0.00032 Score=69.75 Aligned_cols=156 Identities=13% Similarity=0.079 Sum_probs=104.4
Q ss_pred EEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCC-------ceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCCc
Q 023864 110 LLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS-------YFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLN 181 (276)
Q Consensus 110 L~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~-------~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tlk 181 (276)
-.+. ++++|..+. +..|..+|.+||+++=+.++... .+..|+++.+ +++|+.+. ++.++.+|++|.+
T Consensus 57 Pvv~-~g~vy~~~~---~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-~g~v~AlD~~TG~ 131 (488)
T cd00216 57 PLVV-DGDMYFTTS---HSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-DGRLVALDAETGK 131 (488)
T ss_pred CEEE-CCEEEEeCC---CCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-CCeEEEEECCCCC
Confidence 3455 689998655 37899999999998777655432 2455677777 99999885 6899999999999
Q ss_pred EEEEEecCCC--CeeEE----eeCCCEEEEEC---------CCceEEEEcCCCCcEEEEEEeeeC-CEeee---------
Q 023864 182 KLEEFTHQMK--DGWGL----ATDGKVLFGSD---------GSSMLYQIDPQTLKVIRKDIVRYK-GREVR--------- 236 (276)
Q Consensus 182 ~i~~~~~~~~--EGWGL----T~Dg~~L~vSD---------GS~~L~viDp~t~~vi~~I~V~~~-g~pv~--------- 236 (276)
++-++..... .++++ +-++..+|+.. ....|+-+|++|++++=+...... .....
T Consensus 132 ~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~ 211 (488)
T cd00216 132 QVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMW 211 (488)
T ss_pred EeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCccee
Confidence 9999986522 23332 23456777743 146899999999998766555311 00000
Q ss_pred ------eeeeeEEE--CCEEEEEeC-----------------CCCCeEEEEeCCCCcEEE
Q 023864 237 ------NLNELEFI--KGEVWANVW-----------------QVWPCIPYAYLQAFGSSL 271 (276)
Q Consensus 237 ------~lNELE~i--dG~lyANvw-----------------~s~d~I~vIDp~T~~v~l 271 (276)
..+-..+. +|.||+..- .+ +.|..+|.+||++.=
T Consensus 212 ~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~-~~l~Ald~~tG~~~W 270 (488)
T cd00216 212 GPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYT-DSIVALDADTGKVKW 270 (488)
T ss_pred cCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCce-eeEEEEcCCCCCEEE
Confidence 00112232 577887752 12 479999999998753
No 44
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.95 E-value=0.00094 Score=66.40 Aligned_cols=160 Identities=14% Similarity=0.092 Sum_probs=106.6
Q ss_pred CceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCc-----eEEEEEEeCCEEEEEEe--------eCCEE
Q 023864 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY-----FGEGLTLLGEKLFQVTW--------LQKTG 172 (276)
Q Consensus 106 FTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~-----FgEGit~~g~~LyqlTw--------k~~~v 172 (276)
...|+.+.+++++|.++. +..|..+|.+||+++=+..++... +..+.++.++.+|+-+. ..+.+
T Consensus 101 ~~~g~~~~~~~~V~v~~~---~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v 177 (488)
T cd00216 101 VNRGVAYWDPRKVFFGTF---DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGAL 177 (488)
T ss_pred ccCCcEEccCCeEEEecC---CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEE
Confidence 456776663378997654 579999999999998888776542 33456777889988764 35789
Q ss_pred EEEeCCCCcEEEEEecCCCC-----e---------------eE-Ee--eCCCEEEEECCC------------------ce
Q 023864 173 FIYDQNNLNKLEEFTHQMKD-----G---------------WG-LA--TDGKVLFGSDGS------------------SM 211 (276)
Q Consensus 173 ~V~D~~tlk~i~~~~~~~~E-----G---------------WG-LT--~Dg~~L~vSDGS------------------~~ 211 (276)
+.+|++|.+++-+++...++ . |+ .+ +.+..+|+..+. +.
T Consensus 178 ~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~ 257 (488)
T cd00216 178 RAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDS 257 (488)
T ss_pred EEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceee
Confidence 99999999999888753111 1 21 22 236778885432 38
Q ss_pred EEEEcCCCCcEEEEEEeeeC------CEeeeeeeeeEEECCE----EEEEeCCCCCeEEEEeCCCCcEE
Q 023864 212 LYQIDPQTLKVIRKDIVRYK------GREVRNLNELEFIKGE----VWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 212 L~viDp~t~~vi~~I~V~~~------g~pv~~lNELE~idG~----lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
|+-+|++|++++=+..+... +..-..+-++.-++|. ||+.. .+ ..+..+|++||+++
T Consensus 258 l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~-~~-G~l~ald~~tG~~~ 324 (488)
T cd00216 258 IVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAP-KN-GFFYVLDRTTGKLI 324 (488)
T ss_pred EEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEEC-CC-ceEEEEECCCCcEe
Confidence 99999999999865554321 1111112222224553 66665 34 68999999998865
No 45
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.92 E-value=0.00069 Score=65.88 Aligned_cols=157 Identities=16% Similarity=0.104 Sum_probs=92.5
Q ss_pred eEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC--EEEEEeCCCCcEEE
Q 023864 108 QGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLNKLE 184 (276)
Q Consensus 108 QGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~--~v~V~D~~tlk~i~ 184 (276)
....|+|||+ |+...-.-+...|.++|+++|+.......+....+--+..+|++|+....+++ .++++|.++.+...
T Consensus 207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~ 286 (433)
T PRK04922 207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR 286 (433)
T ss_pred ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE
Confidence 4678899975 44332222567899999999986544444433332233445678876666555 69999998876532
Q ss_pred EEecC-CCCeeEEeeCCCEEE-EEC--CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC-EEEEEeCCC-CC
Q 023864 185 EFTHQ-MKDGWGLATDGKVLF-GSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQV-WP 257 (276)
Q Consensus 185 ~~~~~-~~EGWGLT~Dg~~L~-vSD--GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG-~lyANvw~s-~d 257 (276)
-.... ....-.+++||++|+ .|| |..+|+.+|.++.+.. ++.. ++.. .....|. || +|+...-.. ..
T Consensus 287 lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~--~g~~---~~~~~~SpDG~~Ia~~~~~~~~~ 360 (433)
T PRK04922 287 LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTF--QGNY---NARASVSPDGKKIAMVHGSGGQY 360 (433)
T ss_pred CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-Eeec--CCCC---ccCEEECCCCCEEEEEECCCCce
Confidence 21211 112235788999765 576 5678999999887643 3432 2211 1123444 55 454332121 02
Q ss_pred eEEEEeCCCCcEE
Q 023864 258 CIPYAYLQAFGSS 270 (276)
Q Consensus 258 ~I~vIDp~T~~v~ 270 (276)
.|.++|+++++..
T Consensus 361 ~I~v~d~~~g~~~ 373 (433)
T PRK04922 361 RIAVMDLSTGSVR 373 (433)
T ss_pred eEEEEECCCCCeE
Confidence 6999999887643
No 46
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.92 E-value=0.0014 Score=63.18 Aligned_cols=156 Identities=18% Similarity=0.151 Sum_probs=91.4
Q ss_pred ceEEEEecCCE-E-EEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC--EEEEEeCCCCcE
Q 023864 107 TQGLLYAENDT-L-FESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLNK 182 (276)
Q Consensus 107 TQGL~~~~dg~-L-yeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~--~v~V~D~~tlk~ 182 (276)
.....|+|||+ | |.+.. .+...|.++|+++|+...-...+.....-....+|++|+....+++ .++++|.++.+.
T Consensus 201 ~~~p~wSpDG~~la~~s~~-~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~ 279 (430)
T PRK00178 201 ILSPRWSPDGKRIAYVSFE-QKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL 279 (430)
T ss_pred eeeeeECCCCCEEEEEEcC-CCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence 34668899974 5 54432 3567899999999976543333332222233445678876665554 799999988765
Q ss_pred EEEEe-cC-CCCeeEEeeCCCEE-EEEC--CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC-EEE-EEeCC
Q 023864 183 LEEFT-HQ-MKDGWGLATDGKVL-FGSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVW-ANVWQ 254 (276)
Q Consensus 183 i~~~~-~~-~~EGWGLT~Dg~~L-~vSD--GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG-~ly-ANvw~ 254 (276)
. ++. .. ....-..++||+.| |.|| |..+|+.+|.++.++. ++... +.. .....+. || +|+ .+.-.
T Consensus 280 ~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~--~~~---~~~~~~Spdg~~i~~~~~~~ 352 (430)
T PRK00178 280 S-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFV--GNY---NARPRLSADGKTLVMVHRQD 352 (430)
T ss_pred E-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC--CCC---ccceEECCCCCEEEEEEccC
Confidence 3 332 11 11122467899876 4566 5779999999988754 33321 111 0112232 44 444 33322
Q ss_pred CCCeEEEEeCCCCcEE
Q 023864 255 VWPCIPYAYLQAFGSS 270 (276)
Q Consensus 255 s~d~I~vIDp~T~~v~ 270 (276)
....|.++|+++++..
T Consensus 353 ~~~~l~~~dl~tg~~~ 368 (430)
T PRK00178 353 GNFHVAAQDLQRGSVR 368 (430)
T ss_pred CceEEEEEECCCCCEE
Confidence 1136999999997653
No 47
>PTZ00420 coronin; Provisional
Probab=97.84 E-value=0.0049 Score=63.19 Aligned_cols=127 Identities=11% Similarity=0.055 Sum_probs=85.8
Q ss_pred CCCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcE-EEE-----eecCCC-ceEEEEEEeC--CEEEEEEeeCCEEE
Q 023864 104 RAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKV-EAI-----NQMEGS-YFGEGLTLLG--EKLFQVTWLQKTGF 173 (276)
Q Consensus 104 ~aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv-~~~-----~~l~~~-~FgEGit~~g--~~LyqlTwk~~~v~ 173 (276)
...+..+.|+|+ +.++.|+| .+..|+.||+.++.. ... ..+..+ ---..+.+.. ..+....-.++++.
T Consensus 74 ~~~V~~lafsP~~~~lLASgS--~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIr 151 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGS--EDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVN 151 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEe--CCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEE
Confidence 456689999986 67777777 788999999987531 111 012211 1123445543 34444556789999
Q ss_pred EEeCCCCcEEEEEecC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCC
Q 023864 174 IYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKG 232 (276)
Q Consensus 174 V~D~~tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g 232 (276)
+||..+.+.+.++..+ .-....+.+||..|..+.....|.++|+.+.+.+.++....++
T Consensus 152 IWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~ 211 (568)
T PTZ00420 152 IWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGG 211 (568)
T ss_pred EEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCC
Confidence 9999999887777643 1133445789998877655678999999999988777655433
No 48
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.84 E-value=0.0012 Score=63.67 Aligned_cols=101 Identities=20% Similarity=0.272 Sum_probs=78.2
Q ss_pred CCeEEEEeCCCCcEEEEeecCCCceEE-EEEEeCCEEEEEEe---------eCCEEEEEeCCCCcEEEEEecCCC-----
Q 023864 127 RSSVRRVALETGKVEAINQMEGSYFGE-GLTLLGEKLFQVTW---------LQKTGFIYDQNNLNKLEEFTHQMK----- 191 (276)
Q Consensus 127 ~S~I~~iDl~tgkv~~~~~l~~~~FgE-Git~~g~~LyqlTw---------k~~~v~V~D~~tlk~i~~~~~~~~----- 191 (276)
.+++.++|.+++|++..++.+ ++|- -++.+++.+|+++- +.+.+.+||.+||++.+++..|.+
T Consensus 16 ~~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 16 TSRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp SEEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred cceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 368999999999998887654 3333 12334789998653 557899999999999999876621
Q ss_pred ----CeeEEeeCCCEEEEECC--CceEEEEcCCCCcEEEEEEee
Q 023864 192 ----DGWGLATDGKVLFGSDG--SSMLYQIDPQTLKVIRKDIVR 229 (276)
Q Consensus 192 ----EGWGLT~Dg~~L~vSDG--S~~L~viDp~t~~vi~~I~V~ 229 (276)
.=-+|+.||+++|+-|- +..|.++|.+..+++++|.+-
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P 137 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP 137 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC
Confidence 12358899999999994 889999999999999999884
No 49
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=97.83 E-value=0.0004 Score=65.66 Aligned_cols=158 Identities=14% Similarity=0.172 Sum_probs=108.2
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEE---EEEEe-CCEEEEEEeeC
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGE---GLTLL-GEKLFQVTWLQ 169 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgE---Git~~-g~~LyqlTwk~ 169 (276)
.+++.||.....=..|++..+||.+|.+ .|-.+.|.++|+.++. -..++.|.. -.. ++-.+ -+++|..||..
T Consensus 178 ~~i~vfpaPqG~gpyGi~atpdGsvwya--slagnaiaridp~~~~-aev~p~P~~-~~~gsRriwsdpig~~wittwg~ 253 (353)
T COG4257 178 NVISVFPAPQGGGPYGICATPDGSVWYA--SLAGNAIARIDPFAGH-AEVVPQPNA-LKAGSRRIWSDPIGRAWITTWGT 253 (353)
T ss_pred CceeeeccCCCCCCcceEECCCCcEEEE--eccccceEEcccccCC-cceecCCCc-ccccccccccCccCcEEEeccCC
Confidence 5788887643333459999999998876 2456889999999983 233333321 111 22222 27999999999
Q ss_pred CEEEEEeCCCCcEEEEEecC--CCCeeEEeeCC-CEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEEC
Q 023864 170 KTGFIYDQNNLNKLEEFTHQ--MKDGWGLATDG-KVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK 245 (276)
Q Consensus 170 ~~v~V~D~~tlk~i~~~~~~--~~EGWGLT~Dg-~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~id 245 (276)
+.+..||+.+.. -.+++.+ .++++.+--|. .++|.|| +++.|..+||+|.+ +.|-.-.+|-.+--.|.-..
T Consensus 254 g~l~rfdPs~~s-W~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta~----ftv~p~pr~n~gn~ql~gr~ 328 (353)
T COG4257 254 GSLHRFDPSVTS-WIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETAR----FTVLPIPRPNSGNIQLDGRP 328 (353)
T ss_pred ceeeEeCccccc-ceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccce----EEEecCCCCCCCceeccCCC
Confidence 999999998877 5566665 56888876654 6899999 89999999999874 44433223322211233346
Q ss_pred CEEEEEeCCCCCeEEE
Q 023864 246 GEVWANVWQVWPCIPY 261 (276)
Q Consensus 246 G~lyANvw~s~d~I~v 261 (276)
|++|..--.. |.+++
T Consensus 329 ge~W~~e~gv-d~lv~ 343 (353)
T COG4257 329 GELWFTEAGV-DALVT 343 (353)
T ss_pred CceeecccCc-ceeEE
Confidence 7899887777 76665
No 50
>PTZ00420 coronin; Provisional
Probab=97.82 E-value=0.0045 Score=63.46 Aligned_cols=154 Identities=16% Similarity=0.086 Sum_probs=102.1
Q ss_pred CCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCCEEEEEeCCCCc
Q 023864 104 RAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLN 181 (276)
Q Consensus 104 ~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~tlk 181 (276)
...+..+.|+|++. ++.++| .+..|+.||+.+++....+..+.... .+++. ++.++..+-+++++.+||+.+.+
T Consensus 125 ~~~V~sVaf~P~g~~iLaSgS--~DgtIrIWDl~tg~~~~~i~~~~~V~--SlswspdG~lLat~s~D~~IrIwD~Rsg~ 200 (568)
T PTZ00420 125 KKKISIIDWNPMNYYIMCSSG--FDSFVNIWDIENEKRAFQINMPKKLS--SLKWNIKGNLLSGTCVGKHMHIIDPRKQE 200 (568)
T ss_pred CCcEEEEEECCCCCeEEEEEe--CCCeEEEEECCCCcEEEEEecCCcEE--EEEECCCCCEEEEEecCCEEEEEECCCCc
Confidence 34567999999875 556666 67899999999998776665554443 45554 35667778889999999999999
Q ss_pred EEEEEecCCCCe-------e--EEeeCCCEEEEECCC----ceEEEEcCCCC-cEEEEEEeeeCCEee-eeeeeeEEECC
Q 023864 182 KLEEFTHQMKDG-------W--GLATDGKVLFGSDGS----SMLYQIDPQTL-KVIRKDIVRYKGREV-RNLNELEFIKG 246 (276)
Q Consensus 182 ~i~~~~~~~~EG-------W--GLT~Dg~~L~vSDGS----~~L~viDp~t~-~vi~~I~V~~~g~pv-~~lNELE~idG 246 (276)
.+.++.-. +| | ++.+|++.|+.+-.+ .+|.++|..++ +.+..+.......++ .... ..+|
T Consensus 201 ~i~tl~gH--~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D---~~tg 275 (568)
T PTZ00420 201 IASSFHIH--DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYD---ESTG 275 (568)
T ss_pred EEEEEecc--cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeee---CCCC
Confidence 99888632 22 2 234677777763322 37999999864 455554443221221 1111 1257
Q ss_pred EEEEEeCCCCCeEEEEeCCCC
Q 023864 247 EVWANVWQVWPCIPYAYLQAF 267 (276)
Q Consensus 247 ~lyANvw~s~d~I~vIDp~T~ 267 (276)
.+|+.--.+ ..|-+-|..++
T Consensus 276 ~l~lsGkGD-~tIr~~e~~~~ 295 (568)
T PTZ00420 276 LIYLIGKGD-GNCRYYQHSLG 295 (568)
T ss_pred CEEEEEECC-CeEEEEEccCC
Confidence 788776566 78888887764
No 51
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.81 E-value=0.0016 Score=63.43 Aligned_cols=156 Identities=13% Similarity=0.098 Sum_probs=90.9
Q ss_pred eEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC--EEEEEeCCCCcEEE
Q 023864 108 QGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLNKLE 184 (276)
Q Consensus 108 QGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~--~v~V~D~~tlk~i~ 184 (276)
-...|+|||+ |+.....-+...|..+|+++|+.......+....+-....++++|+....+++ .++++|.++.+ +.
T Consensus 199 ~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~ 277 (427)
T PRK02889 199 ISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR 277 (427)
T ss_pred ccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE
Confidence 3678999975 43333223567899999999987554445544333344445678876544443 57888876554 33
Q ss_pred EEecC--CCCeeEEeeCCCEEE-EEC--CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC-EE-EEEeCCCC
Q 023864 185 EFTHQ--MKDGWGLATDGKVLF-GSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EV-WANVWQVW 256 (276)
Q Consensus 185 ~~~~~--~~EGWGLT~Dg~~L~-vSD--GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG-~l-yANvw~s~ 256 (276)
++... ....-..++||++|+ +|| |..+|+.+|.++.+.. ++.. .+.... ...|. || +| |++.....
T Consensus 278 ~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~--~g~~~~---~~~~SpDG~~Ia~~s~~~g~ 351 (427)
T PRK02889 278 RLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTF--TGSYNT---SPRISPDGKLLAYISRVGGA 351 (427)
T ss_pred ECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEec--CCCCcC---ceEECCCCCEEEEEEccCCc
Confidence 33211 111234789999764 677 6789999998876543 3332 121111 12243 55 43 44432221
Q ss_pred CeEEEEeCCCCcEE
Q 023864 257 PCIPYAYLQAFGSS 270 (276)
Q Consensus 257 d~I~vIDp~T~~v~ 270 (276)
..|.++|.++++..
T Consensus 352 ~~I~v~d~~~g~~~ 365 (427)
T PRK02889 352 FKLYVQDLATGQVT 365 (427)
T ss_pred EEEEEEECCCCCeE
Confidence 37999999887643
No 52
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=97.77 E-value=6.8e-05 Score=49.19 Aligned_cols=33 Identities=36% Similarity=0.375 Sum_probs=31.0
Q ss_pred eCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeee
Q 023864 198 TDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 198 ~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~ 230 (276)
+||++||++| ++++|.++|++++++++++.|+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~ 34 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGG 34 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCC
Confidence 5899999999 89999999999999999999975
No 53
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.76 E-value=0.0021 Score=63.13 Aligned_cols=151 Identities=17% Similarity=0.166 Sum_probs=95.3
Q ss_pred EEEEecCCE--EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeC--CEEEEEeCCCCcEEE
Q 023864 109 GLLYAENDT--LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLNKLE 184 (276)
Q Consensus 109 GL~~~~dg~--LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~--~~v~V~D~~tlk~i~ 184 (276)
...++|||+ +|.+...-+...|.++|+++|+...-...+..........+|++|.....++ ..++++|.++.+. .
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~ 270 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-T 270 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-E
Confidence 567899874 5543332247899999999998765555554444455666777776655444 5799999877653 3
Q ss_pred EEec-C-CCCeeEEeeCCCEE-EEEC--CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCE--EEEEeCC--
Q 023864 185 EFTH-Q-MKDGWGLATDGKVL-FGSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE--VWANVWQ-- 254 (276)
Q Consensus 185 ~~~~-~-~~EGWGLT~Dg~~L-~vSD--GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~--lyANvw~-- 254 (276)
++.. + .-.....+|||++| |+|| |..+|+++|.++.+..+- ..+|.. |. .|. ||+ +|+..-.
T Consensus 271 ~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl---t~~g~~----~~-~~SPDG~~Ia~~~~~~~~ 342 (419)
T PRK04043 271 QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV---VFHGKN----NS-SVSTYKNYIVYSSRETNN 342 (419)
T ss_pred EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC---ccCCCc----Cc-eECCCCCEEEEEEcCCCc
Confidence 3421 1 11223588999876 5576 567999999998877432 222221 21 343 554 4544321
Q ss_pred -----CCCeEEEEeCCCCcE
Q 023864 255 -----VWPCIPYAYLQAFGS 269 (276)
Q Consensus 255 -----s~d~I~vIDp~T~~v 269 (276)
. .+|.++|+++++.
T Consensus 343 ~~~~~~-~~I~v~d~~~g~~ 361 (419)
T PRK04043 343 EFGKNT-FNLYLISTNSDYI 361 (419)
T ss_pred ccCCCC-cEEEEEECCCCCe
Confidence 2 4799999999764
No 54
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.76 E-value=0.0036 Score=61.76 Aligned_cols=163 Identities=13% Similarity=0.087 Sum_probs=113.7
Q ss_pred CCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeC-CCCcEEEEeecCC--CceEEEEEEeCCEEEEEEeeCCEEEEEeCC
Q 023864 102 DPRAFTQGLLYAENDTLFESTGLYGRSSVRRVAL-ETGKVEAINQMEG--SYFGEGLTLLGEKLFQVTWLQKTGFIYDQN 178 (276)
Q Consensus 102 d~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl-~tgkv~~~~~l~~--~~FgEGit~~g~~LyqlTwk~~~v~V~D~~ 178 (276)
+......++.|++|+....++. .+..|++||. +.++.++..+ +- ..++-.+...+ ++.+--=.++++.++|..
T Consensus 201 ~h~~~v~~~~fs~d~~~l~s~s--~D~tiriwd~~~~~~~~~~l~-gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~ 276 (456)
T KOG0266|consen 201 GHTRGVSDVAFSPDGSYLLSGS--DDKTLRIWDLKDDGRNLKTLK-GHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVR 276 (456)
T ss_pred ccccceeeeEECCCCcEEEEec--CCceEEEeeccCCCeEEEEec-CCCCceEEEEecCCC-CEEEEecCCCcEEEEecc
Confidence 3466677999999998666655 8899999999 5556666654 43 33444444445 788888889999999999
Q ss_pred CCcEEEEEecCCCCeeE---EeeCCCEEEEECCCceEEEEcCCCCcEE--EEEEeeeCCEeeeeeeeeEEE-CCEEEEEe
Q 023864 179 NLNKLEEFTHQMKDGWG---LATDGKVLFGSDGSSMLYQIDPQTLKVI--RKDIVRYKGREVRNLNELEFI-KGEVWANV 252 (276)
Q Consensus 179 tlk~i~~~~~~~~EGWG---LT~Dg~~L~vSDGS~~L~viDp~t~~vi--~~I~V~~~g~pv~~lNELE~i-dG~lyANv 252 (276)
+.+.++.++.. .++.- +.+||..|+.++-+..|.++|..+++.. +.+.=.. .+. -++...+. ||+..+..
T Consensus 277 ~~~~~~~l~~h-s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~--~~~-~~~~~~fsp~~~~ll~~ 352 (456)
T KOG0266|consen 277 TGECVRKLKGH-SDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAE--NSA-PVTSVQFSPNGKYLLSA 352 (456)
T ss_pred CCeEEEeeecc-CCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCC--CCC-ceeEEEECCCCcEEEEe
Confidence 99999999754 23333 6689999999877999999999999843 3322222 111 23344453 56555555
Q ss_pred CCCCCeEEEEeCCCCcEEEEE
Q 023864 253 WQVWPCIPYAYLQAFGSSLVY 273 (276)
Q Consensus 253 w~s~d~I~vIDp~T~~v~l~~ 273 (276)
+.. ..+..-|..+++.+..|
T Consensus 353 ~~d-~~~~~w~l~~~~~~~~~ 372 (456)
T KOG0266|consen 353 SLD-RTLKLWDLRSGKSVGTY 372 (456)
T ss_pred cCC-CeEEEEEccCCcceeee
Confidence 566 68888888887665443
No 55
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.75 E-value=0.0018 Score=65.44 Aligned_cols=110 Identities=16% Similarity=0.148 Sum_probs=77.9
Q ss_pred CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC--Cc--------eEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEE
Q 023864 115 NDTLFESTGLYGRSSVRRVALETGKVEAINQMEG--SY--------FGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLE 184 (276)
Q Consensus 115 dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~--~~--------FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~ 184 (276)
+|+||.++. ...|..+|.+||+++=+..... .. ...|+++.++++|+.++ ++.++.+|++|.+++-
T Consensus 69 ~g~vyv~s~---~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-dg~l~ALDa~TGk~~W 144 (527)
T TIGR03075 69 DGVMYVTTS---YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-DARLVALDAKTGKVVW 144 (527)
T ss_pred CCEEEEECC---CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-CCEEEEEECCCCCEEe
Confidence 589998655 3479999999999877765431 11 12467888999999886 6789999999999998
Q ss_pred EEecC-CCCeeEEee----CCCEEEEEC-C-----CceEEEEcCCCCcEEEEEEe
Q 023864 185 EFTHQ-MKDGWGLAT----DGKVLFGSD-G-----SSMLYQIDPQTLKVIRKDIV 228 (276)
Q Consensus 185 ~~~~~-~~EGWGLT~----Dg~~L~vSD-G-----S~~L~viDp~t~~vi~~I~V 228 (276)
++... ...++.++. .+..+|+.. + ...|+-+|++|++++=+...
T Consensus 145 ~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 145 SKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred ecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 87653 112333321 244677743 2 46899999999998755444
No 56
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.74 E-value=0.0015 Score=60.97 Aligned_cols=142 Identities=17% Similarity=0.123 Sum_probs=105.7
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcE--EEEeecC-CCceEEEEEEeCCEEEEEEee
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKV--EAINQME-GSYFGEGLTLLGEKLFQVTWL 168 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv--~~~~~l~-~~~FgEGit~~g~~LyqlTwk 168 (276)
+-.-..+++| +..=+.-|++.||++.+. ++ |.-.||.||+.+++. +.+...+ ++.-+.|+-.+|..+|-- -.
T Consensus 29 tG~C~rTiqh-~dsqVNrLeiTpdk~~LA-aa--~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTg-se 103 (311)
T KOG0315|consen 29 TGICSRTIQH-PDSQVNRLEITPDKKDLA-AA--GNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTG-SE 103 (311)
T ss_pred cCeEEEEEec-CccceeeEEEcCCcchhh-hc--cCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEec-CC
Confidence 3456778999 455568999999988775 44 567899999999864 5566666 567777888777766643 46
Q ss_pred CCEEEEEeCCCCcEEEEEecCCC-CeeEEeeCCCEEEEECCCceEEEEcC-----------CCCcEEEEEEeeeCCEeee
Q 023864 169 QKTGFIYDQNNLNKLEEFTHQMK-DGWGLATDGKVLFGSDGSSMLYQIDP-----------QTLKVIRKDIVRYKGREVR 236 (276)
Q Consensus 169 ~~~v~V~D~~tlk~i~~~~~~~~-EGWGLT~Dg~~L~vSDGS~~L~viDp-----------~t~~vi~~I~V~~~g~pv~ 236 (276)
++++-|+|...+..-+.|....+ .-.-+.|+...|+++|.+..|+++|. +....++++.|..+|.-+.
T Consensus 104 Dgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~ 183 (311)
T KOG0315|consen 104 DGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLA 183 (311)
T ss_pred CceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEE
Confidence 89999999999888888876522 23347788899999999999999994 4456678888877766444
Q ss_pred ee
Q 023864 237 NL 238 (276)
Q Consensus 237 ~l 238 (276)
-.
T Consensus 184 a~ 185 (311)
T KOG0315|consen 184 AA 185 (311)
T ss_pred Ee
Confidence 33
No 57
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.73 E-value=0.011 Score=61.91 Aligned_cols=157 Identities=11% Similarity=0.079 Sum_probs=103.1
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCC----cEEE--EeecCCCceEEEEEEe--CCEEEEEEeeCCEEEEE
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETG----KVEA--INQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIY 175 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tg----kv~~--~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~ 175 (276)
...+-.+.|++||.++.++| .+..|++||.++. +... ...+..+.--.++++. .+........++.+.+|
T Consensus 483 ~~~V~~i~fs~dg~~latgg--~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lW 560 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAG--VNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVW 560 (793)
T ss_pred CCcEEEEEECCCCCEEEEEe--CCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEE
Confidence 45567899999999888777 7889999998642 1100 0011111111234443 34566677789999999
Q ss_pred eCCCCcEEEEEecCCCCeeEEe--e-CCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE--CCEEEE
Q 023864 176 DQNNLNKLEEFTHQMKDGWGLA--T-DGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWA 250 (276)
Q Consensus 176 D~~tlk~i~~~~~~~~EGWGLT--~-Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i--dG~lyA 250 (276)
|..+.+.+.++.-....=|.+. + |+..|+....+..|.++|..+.+.+..+.... .+.-+.+. +|..+|
T Consensus 561 d~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~------~v~~v~~~~~~g~~la 634 (793)
T PLN00181 561 DVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKA------NICCVQFPSESGRSLA 634 (793)
T ss_pred ECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCC------CeEEEEEeCCCCCEEE
Confidence 9999998888853223445654 3 56666666667899999999988877765421 23334443 466666
Q ss_pred EeCCCCCeEEEEeCCCCcE
Q 023864 251 NVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 251 Nvw~s~d~I~vIDp~T~~v 269 (276)
..-.+ +.|.+.|..+++.
T Consensus 635 tgs~d-g~I~iwD~~~~~~ 652 (793)
T PLN00181 635 FGSAD-HKVYYYDLRNPKL 652 (793)
T ss_pred EEeCC-CeEEEEECCCCCc
Confidence 66566 8899999887653
No 58
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.69 E-value=0.0034 Score=59.48 Aligned_cols=114 Identities=10% Similarity=0.048 Sum_probs=73.0
Q ss_pred eEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC--EEEEEeCCCCcEEE
Q 023864 108 QGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLNKLE 184 (276)
Q Consensus 108 QGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~--~v~V~D~~tlk~i~ 184 (276)
....|++||+ |+.+....+...|..+|+++++..+....+......-...++++|+....+.+ .++++|.++.+. .
T Consensus 237 ~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~ 315 (417)
T TIGR02800 237 GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-R 315 (417)
T ss_pred cceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-E
Confidence 4678999974 76655545778899999999876443322211111123335677776665543 699999887764 3
Q ss_pred EEecC--CCCeeEEeeCCCEEEEECC---CceEEEEcCCCCcE
Q 023864 185 EFTHQ--MKDGWGLATDGKVLFGSDG---SSMLYQIDPQTLKV 222 (276)
Q Consensus 185 ~~~~~--~~EGWGLT~Dg~~L~vSDG---S~~L~viDp~t~~v 222 (276)
++... ......+++||+.+++++. ..+|+++|+++...
T Consensus 316 ~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 316 RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE 358 (417)
T ss_pred EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence 34322 1133457899999888664 34899999998543
No 59
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=97.69 E-value=0.004 Score=58.32 Aligned_cols=156 Identities=15% Similarity=0.112 Sum_probs=97.8
Q ss_pred ceEEEEecCCEEEEE-cCC---------CCCCeEEEEeCCCCcEEEEeecCC-----CceEEEEEEeC-------CEEEE
Q 023864 107 TQGLLYAENDTLFES-TGL---------YGRSSVRRVALETGKVEAINQMEG-----SYFGEGLTLLG-------EKLFQ 164 (276)
Q Consensus 107 TQGL~~~~dg~LyeS-tG~---------yg~S~I~~iDl~tgkv~~~~~l~~-----~~FgEGit~~g-------~~Lyq 164 (276)
+|+++++.+|+||+= +|. .+.-+|..||+.|+++++++.+|+ .-|=.-+.++. ..+|+
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 479999999999974 443 345699999999999999998884 34556778876 58999
Q ss_pred EEeeCCEEEEEeCCCCcEEEEE--------------------ecC-CCCeeEEee---CCCEEEEEC-CCceEEEEcCCC
Q 023864 165 VTWLQKTGFIYDQNNLNKLEEF--------------------THQ-MKDGWGLAT---DGKVLFGSD-GSSMLYQIDPQT 219 (276)
Q Consensus 165 lTwk~~~v~V~D~~tlk~i~~~--------------------~~~-~~EGWGLT~---Dg~~L~vSD-GS~~L~viDp~t 219 (276)
..-...-+.|||.++.+--+-. ... ...|..|.+ ||++||-.= .+.++|-+..+.
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~ 162 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSV 162 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHH
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHH
Confidence 9999999999999886543221 111 113344544 777887755 567787775322
Q ss_pred Cc---EEE------E-EEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCC
Q 023864 220 LK---VIR------K-DIVRYKGREVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 220 ~~---vi~------~-I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T 266 (276)
++ ... . ..+++.+ ....-|.+. +|.||.+.... +.|.+.||.+
T Consensus 163 L~~~~~~~~~~~~~~v~~lG~k~---~~s~g~~~D~~G~ly~~~~~~-~aI~~w~~~~ 216 (287)
T PF03022_consen 163 LRDPSLSDAQALASQVQDLGDKG---SQSDGMAIDPNGNLYFTDVEQ-NAIGCWDPDG 216 (287)
T ss_dssp HCSTT--HHH-HHHT-EEEEE------SECEEEEETTTEEEEEECCC-TEEEEEETTT
T ss_pred hhCccccccccccccceeccccC---CCCceEEECCCCcEEEecCCC-CeEEEEeCCC
Confidence 11 110 1 1223222 122223343 68999999899 9999999998
No 60
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.69 E-value=0.0052 Score=59.81 Aligned_cols=151 Identities=13% Similarity=0.125 Sum_probs=90.8
Q ss_pred CceEEEEecCCE-E-EEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC--EEEEEeCCCCc
Q 023864 106 FTQGLLYAENDT-L-FESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLN 181 (276)
Q Consensus 106 FTQGL~~~~dg~-L-yeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~--~v~V~D~~tlk 181 (276)
..-...|+|||+ | |.+.+ -+...|..+|+++|+......++.....-....+|++|+....+++ .++++|.++.+
T Consensus 205 ~v~~p~wSPDG~~la~~s~~-~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~ 283 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFE-NKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT 283 (429)
T ss_pred ccccceEcCCCCEEEEEEec-CCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC
Confidence 445789999985 4 44433 2457899999999975444444443333334445677877766665 46778887765
Q ss_pred EEEEEecC--CCCeeEEeeCCCEEE-EEC--CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC-EEEEEeCC
Q 023864 182 KLEEFTHQ--MKDGWGLATDGKVLF-GSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQ 254 (276)
Q Consensus 182 ~i~~~~~~--~~EGWGLT~Dg~~L~-vSD--GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG-~lyANvw~ 254 (276)
. .++... .......++||+.|+ +|| |..+|+.+|..+.... .+ +..+ .. ..+. || +|++. .
T Consensus 284 ~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~-~l--~~~~---~~---~~~SpDG~~ia~~--~ 351 (429)
T PRK01742 284 P-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS-LV--GGRG---YS---AQISADGKTLVMI--N 351 (429)
T ss_pred e-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE-Ee--cCCC---CC---ccCCCCCCEEEEE--c
Confidence 4 333321 112345789999765 566 6779999998776542 22 2212 11 1232 55 45443 2
Q ss_pred CCCeEEEEeCCCCcEE
Q 023864 255 VWPCIPYAYLQAFGSS 270 (276)
Q Consensus 255 s~d~I~vIDp~T~~v~ 270 (276)
. +.|.++|.++++..
T Consensus 352 ~-~~i~~~Dl~~g~~~ 366 (429)
T PRK01742 352 G-DNVVKQDLTSGSTE 366 (429)
T ss_pred C-CCEEEEECCCCCeE
Confidence 3 66888999987643
No 61
>PTZ00421 coronin; Provisional
Probab=97.67 E-value=0.011 Score=59.48 Aligned_cols=124 Identities=9% Similarity=0.085 Sum_probs=85.4
Q ss_pred CCCceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCcEEE-----EeecCCC-ceEEEEEEe--CCEEEEEEeeCCEEEE
Q 023864 104 RAFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEA-----INQMEGS-YFGEGLTLL--GEKLFQVTWLQKTGFI 174 (276)
Q Consensus 104 ~aFTQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv~~-----~~~l~~~-~FgEGit~~--g~~LyqlTwk~~~v~V 174 (276)
..-+..+.|+| |+.++.+++ .+..|+.||+.++.... ...+..+ .--..+.+. ++.+....-.++++.+
T Consensus 75 ~~~V~~v~fsP~d~~~LaSgS--~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrI 152 (493)
T PTZ00421 75 EGPIIDVAFNPFDPQKLFTAS--EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNV 152 (493)
T ss_pred CCCEEEEEEcCCCCCEEEEEe--CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEE
Confidence 45567999998 777777777 78899999998764311 1112221 112345554 2345555566899999
Q ss_pred EeCCCCcEEEEEecC--CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEee
Q 023864 175 YDQNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVR 229 (276)
Q Consensus 175 ~D~~tlk~i~~~~~~--~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~ 229 (276)
||.++.+.+..+... .-....+.+||..|+.+..+.+|.++|+.+.+.+.++...
T Consensus 153 WDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H 209 (493)
T PTZ00421 153 WDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAH 209 (493)
T ss_pred EECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecC
Confidence 999999888887522 1133446789998888877889999999999988776543
No 62
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.63 E-value=0.00096 Score=67.40 Aligned_cols=114 Identities=13% Similarity=0.049 Sum_probs=81.5
Q ss_pred EEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCCCee-----------EEeeCCCEEEEECCCceEEEEcCCCCcEE
Q 023864 155 LTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGW-----------GLATDGKVLFGSDGSSMLYQIDPQTLKVI 223 (276)
Q Consensus 155 it~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~EGW-----------GLT~Dg~~L~vSDGS~~L~viDp~t~~vi 223 (276)
-.+.+++||+.+.. +.++.+|++|.+++-++....+.+. |++..++.+|+.+.+..|+-+|++|++++
T Consensus 65 Pvv~~g~vyv~s~~-g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 65 PLVVDGVMYVTTSY-SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVV 143 (527)
T ss_pred CEEECCEEEEECCC-CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEE
Confidence 45678999998874 5799999999999998875421111 23445678999988899999999999998
Q ss_pred EEEEeeeCCEeeeeeeeeEEECCEEEEEeCC-----CCCeEEEEeCCCCcEE
Q 023864 224 RKDIVRYKGREVRNLNELEFIKGEVWANVWQ-----VWPCIPYAYLQAFGSS 270 (276)
Q Consensus 224 ~~I~V~~~g~pv~~lNELE~idG~lyANvw~-----s~d~I~vIDp~T~~v~ 270 (276)
=+..+.+.........--.+.+|.||+.... . ..|..+|++||+..
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~-G~v~AlD~~TG~~l 194 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVR-GYVTAYDAKTGKLV 194 (527)
T ss_pred eecccccccccccccCCcEEECCEEEEeecccccCCC-cEEEEEECCCCcee
Confidence 7666543111111111223568999988753 4 68999999998864
No 63
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.0011 Score=60.73 Aligned_cols=151 Identities=17% Similarity=0.108 Sum_probs=105.8
Q ss_pred eEEEEEEecC-CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCE
Q 023864 93 IQVVNEFPHD-PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKT 171 (276)
Q Consensus 93 ~~Vv~~~Phd-~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~ 171 (276)
-+++-+-+.+ +..|=+|+.-.+ +.+|.=| |.+..-.+||.+|-+.+.++..+.. |=|+|-+++.|++- --+..
T Consensus 78 gq~~~s~~l~~~~~FgEGit~~g-d~~y~LT--w~egvaf~~d~~t~~~lg~~~y~Ge--GWgLt~d~~~Lims-dGsat 151 (262)
T COG3823 78 GQEIFSEKLAPDTVFGEGITKLG-DYFYQLT--WKEGVAFKYDADTLEELGRFSYEGE--GWGLTSDDKNLIMS-DGSAT 151 (262)
T ss_pred ceEEEEeecCCccccccceeecc-ceEEEEE--eccceeEEEChHHhhhhcccccCCc--ceeeecCCcceEee-CCceE
Confidence 3566666666 699999999886 5676543 3666777899999888888777766 55788888886654 35566
Q ss_pred EEEEeCCCCcEEEEEecCCCCeeEEe------eCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeee-------CCEeeee
Q 023864 172 GFIYDQNNLNKLEEFTHQMKDGWGLA------TDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRY-------KGREVRN 237 (276)
Q Consensus 172 v~V~D~~tlk~i~~~~~~~~EGWGLT------~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~-------~g~pv~~ 237 (276)
+...||+||+.++++..- -+|--++ .-...||..= -+++|..|||++++|++-|.+.. ++..-.-
T Consensus 152 L~frdP~tfa~~~~v~VT-~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nv 230 (262)
T COG3823 152 LQFRDPKTFAELDTVQVT-DDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNV 230 (262)
T ss_pred EEecCHHHhhhcceEEEE-ECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCcccccccc
Confidence 667899999999998753 2443332 3334555532 58899999999999999999853 2333345
Q ss_pred eeeeEEEC--CEEEE
Q 023864 238 LNELEFIK--GEVWA 250 (276)
Q Consensus 238 lNELE~id--G~lyA 250 (276)
||-+.+++ +++|.
T Consensus 231 lNGIA~~~~~~r~~i 245 (262)
T COG3823 231 LNGIAHDPQQDRFLI 245 (262)
T ss_pred ccceeecCcCCeEEE
Confidence 77777763 35554
No 64
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=97.56 E-value=0.0083 Score=57.03 Aligned_cols=153 Identities=9% Similarity=0.025 Sum_probs=107.0
Q ss_pred EecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC--CceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecC
Q 023864 112 YAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG--SYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ 189 (276)
Q Consensus 112 ~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~--~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~ 189 (276)
...||++|..+. ...|..+|+++|+++=+..+.. ..+..++...+++||+-+|.. .++.+|..+.+++-+++.+
T Consensus 65 ~~~dg~v~~~~~---~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g-~~y~ld~~~G~~~W~~~~~ 140 (370)
T COG1520 65 ADGDGTVYVGTR---DGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDG-KLYALDASTGTLVWSRNVG 140 (370)
T ss_pred EeeCCeEEEecC---CCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccc-eEEEEECCCCcEEEEEecC
Confidence 566899998522 2289999999999776666553 667778888899999999988 9999999999999999876
Q ss_pred CCCeeE--EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCC-CCCeEEEEeCCC
Q 023864 190 MKDGWG--LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQ-VWPCIPYAYLQA 266 (276)
Q Consensus 190 ~~EGWG--LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~-s~d~I~vIDp~T 266 (276)
...=|. .......+|+...+..++-+|++|++.+=+..+... ............+|.+|+..-. + ..+..+|+++
T Consensus 141 ~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~vy~~~~~~~-~~~~a~~~~~ 218 (370)
T COG1520 141 GSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAP-LSLSIYGSPAIASGTVYVGSDGYD-GILYALNAED 218 (370)
T ss_pred CCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCc-cccccccCceeecceEEEecCCCc-ceEEEEEccC
Confidence 200122 122345666655679999999999988655545321 1111111122557888876532 5 6899999999
Q ss_pred CcEE
Q 023864 267 FGSS 270 (276)
Q Consensus 267 ~~v~ 270 (276)
|...
T Consensus 219 G~~~ 222 (370)
T COG1520 219 GTLK 222 (370)
T ss_pred CcEe
Confidence 7643
No 65
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=97.53 E-value=0.01 Score=56.38 Aligned_cols=155 Identities=11% Similarity=0.123 Sum_probs=105.3
Q ss_pred eEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC-CceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEE
Q 023864 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (276)
Q Consensus 108 QGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~-~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~ 186 (276)
-|.... ||++|.++.. | .+..+|..+|+.+=+.+++. -.+.......++.+|+.+ .++.++.+|.+|.+.+-++
T Consensus 105 ~~~~~~-~G~i~~g~~~-g--~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~ 179 (370)
T COG1520 105 GPILGS-DGKIYVGSWD-G--KLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTY 179 (370)
T ss_pred CceEEe-CCeEEEeccc-c--eEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEE
Confidence 344444 8999988774 3 89999999999988888887 456677777789999999 7799999999999998886
Q ss_pred ecCCC---CeeE--EeeCCCEEEE-ECC-CceEEEEcCCCCcEEEEEEeee----CCE--eeeeeeeeEEECCEEEEEeC
Q 023864 187 THQMK---DGWG--LATDGKVLFG-SDG-SSMLYQIDPQTLKVIRKDIVRY----KGR--EVRNLNELEFIKGEVWANVW 253 (276)
Q Consensus 187 ~~~~~---EGWG--LT~Dg~~L~v-SDG-S~~L~viDp~t~~vi~~I~V~~----~g~--pv~~lNELE~idG~lyANvw 253 (276)
..+.+ ...+ ...+ ..+|+ +++ +..++-+|+++++.+-...+.. ... ....-+...++++.+|+--+
T Consensus 180 ~~~~~~~~~~~~~~~~~~-~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~ 258 (370)
T COG1520 180 ETPAPLSLSIYGSPAIAS-GTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSY 258 (370)
T ss_pred ecCCccccccccCceeec-ceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEec
Confidence 65411 1111 2223 34555 444 6689999999999987754432 111 11233444456666655554
Q ss_pred CCCCeEEEEeCCCCcEE
Q 023864 254 QVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 254 ~s~d~I~vIDp~T~~v~ 270 (276)
. ..+..+|..+|+.+
T Consensus 259 ~--g~~~~l~~~~G~~~ 273 (370)
T COG1520 259 G--GKLLCLDADTGELI 273 (370)
T ss_pred C--CeEEEEEcCCCceE
Confidence 3 45888998887654
No 66
>PHA02713 hypothetical protein; Provisional
Probab=97.52 E-value=0.0067 Score=61.63 Aligned_cols=154 Identities=11% Similarity=0.097 Sum_probs=99.0
Q ss_pred EEEEecCCEEEEEcCCC-C---CCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeC-----CEEEEEeCCC
Q 023864 109 GLLYAENDTLFESTGLY-G---RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ-----KTGFIYDQNN 179 (276)
Q Consensus 109 GL~~~~dg~LyeStG~y-g---~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~-----~~v~V~D~~t 179 (276)
+.+.. ++.||..+|.. + .+.+.+||+.+++-....+++.....-+++..+++||++-=.+ +.+..||+.+
T Consensus 298 ~~a~l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 298 ASAIV-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred EEEEE-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCC
Confidence 56665 58999987742 2 2668999999987655556665555568889999999996543 4688999876
Q ss_pred Cc--EEEEEecCCCCeeEEeeCCCEEEEECC------------------------CceEEEEcCCCCcEEEEEEeeeCCE
Q 023864 180 LN--KLEEFTHQMKDGWGLATDGKVLFGSDG------------------------SSMLYQIDPQTLKVIRKDIVRYKGR 233 (276)
Q Consensus 180 lk--~i~~~~~~~~EGWGLT~Dg~~L~vSDG------------------------S~~L~viDp~t~~vi~~I~V~~~g~ 233 (276)
-+ .+..++.+ ..+-+.+.-++.||+.=| .+.+...||++.+-...-... .++
T Consensus 377 ~~W~~~~~mp~~-r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~-~~r 454 (557)
T PHA02713 377 DKWKMLPDMPIA-LSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW-TGT 454 (557)
T ss_pred CeEEECCCCCcc-cccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC-ccc
Confidence 54 33444444 344555555667777533 356889999988664221111 111
Q ss_pred eeeeeeeeEEECCEEEEEeCCCC-----CeEEEEeCCC-Cc
Q 023864 234 EVRNLNELEFIKGEVWANVWQVW-----PCIPYAYLQA-FG 268 (276)
Q Consensus 234 pv~~lNELE~idG~lyANvw~s~-----d~I~vIDp~T-~~ 268 (276)
. . --+...+|+||+--..+. +.|-+-||++ ++
T Consensus 455 ~--~-~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~ 492 (557)
T PHA02713 455 I--R-PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG 492 (557)
T ss_pred c--c-CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCC
Confidence 1 1 124577999998754320 3467899998 44
No 67
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.50 E-value=0.00085 Score=62.37 Aligned_cols=98 Identities=17% Similarity=0.168 Sum_probs=65.7
Q ss_pred eEEEEecC-CEEEEEcCCCCCCeE--EEEeCCCCcEEEEe---ecC-----CCceEEEEEEeC-CEEEEEEeeCCEEEEE
Q 023864 108 QGLLYAEN-DTLFESTGLYGRSSV--RRVALETGKVEAIN---QME-----GSYFGEGLTLLG-EKLFQVTWLQKTGFIY 175 (276)
Q Consensus 108 QGL~~~~d-g~LyeStG~yg~S~I--~~iDl~tgkv~~~~---~l~-----~~~FgEGit~~g-~~LyqlTwk~~~v~V~ 175 (276)
.||.++-| .++|...- -+=.| ..||..||.+.+.- +|. ..+++.|+|++. +.||+++|..++++.+
T Consensus 161 Ngl~Wd~d~K~fY~iDs--ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDS--LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKV 238 (310)
T ss_pred ccccccccCcEEEEEcc--CceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEE
Confidence 46666544 34554332 22345 33458888764432 222 467889999985 8999999999999999
Q ss_pred eCCCCcEEEEEecCCCCeeEEeeCCC---EEEEEC
Q 023864 176 DQNNLNKLEEFTHQMKDGWGLATDGK---VLFGSD 207 (276)
Q Consensus 176 D~~tlk~i~~~~~~~~EGWGLT~Dg~---~L~vSD 207 (276)
|+.|.|.+.+|..|.+.=---|--|+ .||++-
T Consensus 239 dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 239 DPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred CCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 99999999999877433333444454 678754
No 68
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.48 E-value=0.0072 Score=58.81 Aligned_cols=152 Identities=12% Similarity=0.040 Sum_probs=89.8
Q ss_pred eEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC--EEEEEeCCCCcEEE
Q 023864 108 QGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLNKLE 184 (276)
Q Consensus 108 QGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~--~v~V~D~~tlk~i~ 184 (276)
..+.|+|||+ |+.+...-|...|..+|+++|++.+...-......--...++++|+...-+++ .++++|.++.+. .
T Consensus 251 ~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~ 329 (433)
T PRK04922 251 GAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-E 329 (433)
T ss_pred cCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-E
Confidence 3678999985 65443333778999999999986543222211111223344567776665443 588899877653 3
Q ss_pred EEecC--CCCeeEEeeCCCEEEEECC---CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCE--EEEEeCCCC
Q 023864 185 EFTHQ--MKDGWGLATDGKVLFGSDG---SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE--VWANVWQVW 256 (276)
Q Consensus 185 ~~~~~--~~EGWGLT~Dg~~L~vSDG---S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~--lyANvw~s~ 256 (276)
++... ....-.+++||+.++++.+ ..+|+++|+++.+.. .+ +.++. .. ...|. ||+ +|+..+...
T Consensus 330 ~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~L--t~~~~-~~---~p~~spdG~~i~~~s~~~g~ 402 (433)
T PRK04922 330 RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TL--TPGSL-DE---SPSFAPNGSMVLYATREGGR 402 (433)
T ss_pred EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-EC--CCCCC-CC---CceECCCCCEEEEEEecCCc
Confidence 33322 1123467899999987543 447999999988764 22 22111 11 12343 564 555555432
Q ss_pred CeEEEEeCCCC
Q 023864 257 PCIPYAYLQAF 267 (276)
Q Consensus 257 d~I~vIDp~T~ 267 (276)
..|.++|+..+
T Consensus 403 ~~L~~~~~~g~ 413 (433)
T PRK04922 403 GVLAAVSTDGR 413 (433)
T ss_pred eEEEEEECCCC
Confidence 57999999653
No 69
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.47 E-value=0.0068 Score=58.02 Aligned_cols=160 Identities=17% Similarity=0.150 Sum_probs=93.0
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCEEEEEcC----------CCCCCeEEEEeCCC--CcEEEE-eecCCCceEEEEEEe
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTG----------LYGRSSVRRVALET--GKVEAI-NQMEGSYFGEGLTLL 158 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG----------~yg~S~I~~iDl~t--gkv~~~-~~l~~~~FgEGit~~ 158 (276)
.++++++=|-= ...-+++++++|+||++.. .-..++|.+++..+ |+.... +-...--++.||++.
T Consensus 3 ~~~l~A~~p~~--~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~ 80 (367)
T TIGR02604 3 KVTLFAAEPLL--RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVA 80 (367)
T ss_pred EEEEEECCCcc--CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEe
Confidence 44556554432 2234899999999998752 11235888887653 554332 223334467899997
Q ss_pred CCEEEEEEeeCCEEEEE-eCC-------CCcEE-EEEecC------CCCeeEEeeCCCEEEEECCC--------------
Q 023864 159 GEKLFQVTWLQKTGFIY-DQN-------NLNKL-EEFTHQ------MKDGWGLATDGKVLFGSDGS-------------- 209 (276)
Q Consensus 159 g~~LyqlTwk~~~v~V~-D~~-------tlk~i-~~~~~~------~~EGWGLT~Dg~~L~vSDGS-------------- 209 (276)
.+.||+.. ...++.+ |.+ ..+++ ..++.. ...|..+.+|| +||+++|+
T Consensus 81 ~~GlyV~~--~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~ 157 (367)
T TIGR02604 81 VGGVYVAT--PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDE 157 (367)
T ss_pred cCCEEEeC--CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccC
Confidence 65599975 4456655 543 12222 234332 12234455676 79999983
Q ss_pred ------ceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeEEEEe
Q 023864 210 ------SMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVWPCIPYAY 263 (276)
Q Consensus 210 ------~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I~vID 263 (276)
..|+.+||.+.+. ++-..| +.+.|.|.+. +|++|++.-.. .....|+
T Consensus 158 ~~~~~~g~i~r~~pdg~~~----e~~a~G--~rnp~Gl~~d~~G~l~~tdn~~-~~~~~i~ 211 (367)
T TIGR02604 158 SRQGLGGGLFRYNPDGGKL----RVVAHG--FQNPYGHSVDSWGDVFFCDNDD-PPLCRVT 211 (367)
T ss_pred cccccCceEEEEecCCCeE----EEEecC--cCCCccceECCCCCEEEEccCC-CceeEEc
Confidence 2588888887653 222223 4588888885 67888654333 4444444
No 70
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.45 E-value=0.00095 Score=70.09 Aligned_cols=120 Identities=17% Similarity=0.164 Sum_probs=96.3
Q ss_pred ceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCCcEEEE
Q 023864 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLEE 185 (276)
Q Consensus 107 TQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tlk~i~~ 185 (276)
.-||+.++-+++.+|+| -+.-+..||+.+..++.+..++..+= ++..+. ..++.+--.+=.+++||..|.++.++
T Consensus 496 V~gla~D~~n~~~vsa~--~~Gilkfw~f~~k~l~~~l~l~~~~~--~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~ 571 (910)
T KOG1539|consen 496 VTGLAVDGTNRLLVSAG--ADGILKFWDFKKKVLKKSLRLGSSIT--GIVYHRVSDLLAIALDDFSIRVVDVVTRKVVRE 571 (910)
T ss_pred eeEEEecCCCceEEEcc--CcceEEEEecCCcceeeeeccCCCcc--eeeeeehhhhhhhhcCceeEEEEEchhhhhhHH
Confidence 36999998789999999 56678899999998888888886532 444433 46666777788899999999999998
Q ss_pred Ee-cC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeee
Q 023864 186 FT-HQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 186 ~~-~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~ 230 (276)
|. +. .---..+++||+||+.++-+.+|.++|..|...+.-+-|..
T Consensus 572 f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~ 618 (910)
T KOG1539|consen 572 FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDS 618 (910)
T ss_pred hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCC
Confidence 85 32 11234578999999999999999999999999998888864
No 71
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.44 E-value=0.043 Score=57.54 Aligned_cols=163 Identities=14% Similarity=0.052 Sum_probs=98.8
Q ss_pred EEEEEE-ecCCCCCceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEE--eCCEEEEEEeeC
Q 023864 94 QVVNEF-PHDPRAFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVTWLQ 169 (276)
Q Consensus 94 ~Vv~~~-Phd~~aFTQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~--~g~~LyqlTwk~ 169 (276)
+.+.++ .| ...+..+.|++ ++.++.++| .+..|+.||+.+++.+.......... .+.+ .++..+...-.+
T Consensus 566 ~~~~~~~~H--~~~V~~l~~~p~~~~~L~Sgs--~Dg~v~iWd~~~~~~~~~~~~~~~v~--~v~~~~~~g~~latgs~d 639 (793)
T PLN00181 566 QLVTEMKEH--EKRVWSIDYSSADPTLLASGS--DDGSVKLWSINQGVSIGTIKTKANIC--CVQFPSESGRSLAFGSAD 639 (793)
T ss_pred eEEEEecCC--CCCEEEEEEcCCCCCEEEEEc--CCCEEEEEECCCCcEEEEEecCCCeE--EEEEeCCCCCEEEEEeCC
Confidence 455555 34 34567999986 677777777 77899999999998877665443333 3333 245666777788
Q ss_pred CEEEEEeCCCCc-EEEEEecCCCCeeEEe-eCCCEEEEECCCceEEEEcCCCC------cEEEEEEeeeCCEeeeeeeee
Q 023864 170 KTGFIYDQNNLN-KLEEFTHQMKDGWGLA-TDGKVLFGSDGSSMLYQIDPQTL------KVIRKDIVRYKGREVRNLNEL 241 (276)
Q Consensus 170 ~~v~V~D~~tlk-~i~~~~~~~~EGWGLT-~Dg~~L~vSDGS~~L~viDp~t~------~vi~~I~V~~~g~pv~~lNEL 241 (276)
+.+.+||..+.+ .+.++.-....=+.+. .|+..|+.+..++.|.++|..+. +.++++.. +. ..+|.+
T Consensus 640 g~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g----h~-~~i~~v 714 (793)
T PLN00181 640 HKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG----HT-NVKNFV 714 (793)
T ss_pred CeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC----CC-CCeeEE
Confidence 999999998765 3444431111112232 37788887767788999998643 23333221 11 123333
Q ss_pred EEE-CCEEEEEeCCCCCeEEEEeCCCCc
Q 023864 242 EFI-KGEVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 242 E~i-dG~lyANvw~s~d~I~vIDp~T~~ 268 (276)
.+. +|.+.|..-.+ +.|.+.|..+..
T Consensus 715 ~~s~~~~~lasgs~D-~~v~iw~~~~~~ 741 (793)
T PLN00181 715 GLSVSDGYIATGSET-NEVFVYHKAFPM 741 (793)
T ss_pred EEcCCCCEEEEEeCC-CEEEEEECCCCC
Confidence 343 34444444455 777777766543
No 72
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.44 E-value=0.0073 Score=58.13 Aligned_cols=145 Identities=12% Similarity=0.130 Sum_probs=103.1
Q ss_pred ceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEE
Q 023864 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (276)
Q Consensus 107 TQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~ 186 (276)
.+-|.+++||+++.++- -+.+|..||+-.|..+.++.++.-..+.-.-..++..++++-.+....+++....+ -.-+
T Consensus 68 i~sl~WS~dgr~LltsS--~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~-h~~L 144 (405)
T KOG1273|consen 68 ITSLCWSRDGRKLLTSS--RDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK-HSVL 144 (405)
T ss_pred eeEEEecCCCCEeeeec--CCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCc-eeec
Confidence 38899999998777666 78899999999999999999998877666666778888888877777777765411 1112
Q ss_pred ecC-------CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCE-EEEEeCCCCC
Q 023864 187 THQ-------MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE-VWANVWQVWP 257 (276)
Q Consensus 187 ~~~-------~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~-lyANvw~s~d 257 (276)
+.. ....--++.-|+++|..++...|.|+|.+|++.+....++. +..+-.+++. +|+ +-.|. + |
T Consensus 145 p~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits----~~~IK~I~~s~~g~~liiNt--s-D 217 (405)
T KOG1273|consen 145 PKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS----VQAIKQIIVSRKGRFLIINT--S-D 217 (405)
T ss_pred cCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech----heeeeEEEEeccCcEEEEec--C-C
Confidence 211 00111255668999999999999999999999998766653 2344444554 555 55555 4 6
Q ss_pred eEEE
Q 023864 258 CIPY 261 (276)
Q Consensus 258 ~I~v 261 (276)
+|++
T Consensus 218 RvIR 221 (405)
T KOG1273|consen 218 RVIR 221 (405)
T ss_pred ceEE
Confidence 6655
No 73
>PHA02713 hypothetical protein; Provisional
Probab=97.44 E-value=0.0037 Score=63.49 Aligned_cols=151 Identities=11% Similarity=0.088 Sum_probs=98.5
Q ss_pred EEEEecCCEEEEEcCCCCC---CeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEee-----------------
Q 023864 109 GLLYAENDTLFESTGLYGR---SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL----------------- 168 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~---S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk----------------- 168 (276)
+++.. +|+||.-+|.-|. +++.+||+.+.+-....+++....+-+++..+++||++-=.
T Consensus 346 ~~~~~-~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~ 424 (557)
T PHA02713 346 SLAVI-DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDM 424 (557)
T ss_pred eEEEE-CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccc
Confidence 66665 5899998774332 56899999998776666777666667888899999998532
Q ss_pred ------CCEEEEEeCCCCc--EEEEEecCCCCeeEEeeCCCEEEEECCC-------ceEEEEcCCC-CcEEE--EEEeee
Q 023864 169 ------QKTGFIYDQNNLN--KLEEFTHQMKDGWGLATDGKVLFGSDGS-------SMLYQIDPQT-LKVIR--KDIVRY 230 (276)
Q Consensus 169 ------~~~v~V~D~~tlk--~i~~~~~~~~EGWGLT~Dg~~L~vSDGS-------~~L~viDp~t-~~vi~--~I~V~~ 230 (276)
.+.+..||+.+-+ .+..++.+ ..+-+++.-+..||+--|. +.+...||++ .+-.. ......
T Consensus 425 ~~~~~~~~~ve~YDP~td~W~~v~~m~~~-r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r 503 (557)
T PHA02713 425 EEDTHSSNKVIRYDTVNNIWETLPNFWTG-TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL 503 (557)
T ss_pred cccccccceEEEECCCCCeEeecCCCCcc-cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence 2568999987654 44444444 3444566556677775442 3578899998 55542 222221
Q ss_pred CCEeeeeeeeeEEECCEEEEEeCCCCC--eEEEEeCCCCc
Q 023864 231 KGREVRNLNELEFIKGEVWANVWQVWP--CIPYAYLQAFG 268 (276)
Q Consensus 231 ~g~pv~~lNELE~idG~lyANvw~s~d--~I~vIDp~T~~ 268 (276)
.+ --+...+|+|||-=..+ . .+-+-||.|++
T Consensus 504 ~~------~~~~~~~~~iyv~Gg~~-~~~~~e~yd~~~~~ 536 (557)
T PHA02713 504 SA------LHTILHDNTIMMLHCYE-SYMLQDTFNVYTYE 536 (557)
T ss_pred cc------ceeEEECCEEEEEeeec-ceeehhhcCccccc
Confidence 11 12346699999843333 3 57778888765
No 74
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.44 E-value=0.01 Score=57.20 Aligned_cols=113 Identities=15% Similarity=0.052 Sum_probs=71.7
Q ss_pred EEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeC--CEEEEEeCCCCcEEEE
Q 023864 109 GLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLNKLEE 185 (276)
Q Consensus 109 GL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~--~~v~V~D~~tlk~i~~ 185 (276)
...|+|||+ |+.+....|...|.++|+++++..+-..-+.....--...++++|+....++ ..++++|.++.+. .+
T Consensus 247 ~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~-~~ 325 (430)
T PRK00178 247 APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA-ER 325 (430)
T ss_pred CeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE-EE
Confidence 578999974 6544444477899999999998654322221111112233567887776554 3688899887764 33
Q ss_pred EecCCCCe--eEEeeCCCEEEEEC---CCceEEEEcCCCCcE
Q 023864 186 FTHQMKDG--WGLATDGKVLFGSD---GSSMLYQIDPQTLKV 222 (276)
Q Consensus 186 ~~~~~~EG--WGLT~Dg~~L~vSD---GS~~L~viDp~t~~v 222 (276)
+....... -.+++||+.|+++. |...|+++|+++.+.
T Consensus 326 lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 326 VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE
Confidence 33321111 24689999987754 345799999998865
No 75
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.42 E-value=0.0096 Score=58.63 Aligned_cols=113 Identities=12% Similarity=0.079 Sum_probs=72.5
Q ss_pred EEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeC--CEEEEEeCCCCcEEEE
Q 023864 109 GLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLNKLEE 185 (276)
Q Consensus 109 GL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~--~~v~V~D~~tlk~i~~ 185 (276)
...|+|||+ |+.+....|...|..+|++++++.+...-...........++++|+....++ ..++++|.++.+.. +
T Consensus 266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~ 344 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-R 344 (448)
T ss_pred CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-E
Confidence 578999975 6554444477889999999998754322211112222344567787766554 46888998877643 3
Q ss_pred EecC--CCCeeEEeeCCCEEEEEC---CCceEEEEcCCCCcE
Q 023864 186 FTHQ--MKDGWGLATDGKVLFGSD---GSSMLYQIDPQTLKV 222 (276)
Q Consensus 186 ~~~~--~~EGWGLT~Dg~~L~vSD---GS~~L~viDp~t~~v 222 (276)
+... ...+-.+++||+.|+.+. |..+|+.+|+++.++
T Consensus 345 Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 345 LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM 386 (448)
T ss_pred EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe
Confidence 3222 112234789999987753 456899999998875
No 76
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.38 E-value=0.0018 Score=64.48 Aligned_cols=121 Identities=16% Similarity=0.206 Sum_probs=90.3
Q ss_pred ceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCC--ceEEEEEEe-CCEEEEEEeeCCEEEEEeCCCCcE
Q 023864 107 TQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGS--YFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNK 182 (276)
Q Consensus 107 TQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~--~FgEGit~~-g~~LyqlTwk~~~v~V~D~~tlk~ 182 (276)
.|-.+|.++|+ ...++| -.-.++.||++++|+..-.++... .+-|-+.+. .+....+.=+++-+.+.-..|.+.
T Consensus 260 i~~a~f~p~G~~~i~~s~--rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el 337 (514)
T KOG2055|consen 260 IQKAEFAPNGHSVIFTSG--RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL 337 (514)
T ss_pred cceeeecCCCceEEEecc--cceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh
Confidence 36778888886 444455 466789999999998665544422 233444443 345666677889999999999999
Q ss_pred EEEEecC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEee
Q 023864 183 LEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVR 229 (276)
Q Consensus 183 i~~~~~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~ 229 (276)
+.+|..+ .--+..++.||+.||++.|...|+++|..+.+++++....
T Consensus 338 i~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~ 385 (514)
T KOG2055|consen 338 ITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD 385 (514)
T ss_pred hheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec
Confidence 9999976 1134447789999999999999999999999888877653
No 77
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.35 E-value=0.014 Score=59.14 Aligned_cols=123 Identities=15% Similarity=0.181 Sum_probs=89.4
Q ss_pred EEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEee------
Q 023864 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL------ 168 (276)
Q Consensus 95 Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk------ 168 (276)
--.++.+ .+.|++-..|+|||.+|.++| .+-+|..||-.||+.+..+.-. ..+.+-+|.+.|.
T Consensus 182 Fk~s~r~-HskFV~~VRysPDG~~Fat~g--sDgki~iyDGktge~vg~l~~~--------~aHkGsIfalsWsPDs~~~ 250 (603)
T KOG0318|consen 182 FKSSFRE-HSKFVNCVRYSPDGSRFATAG--SDGKIYIYDGKTGEKVGELEDS--------DAHKGSIFALSWSPDSTQF 250 (603)
T ss_pred eeecccc-cccceeeEEECCCCCeEEEec--CCccEEEEcCCCccEEEEecCC--------CCccccEEEEEECCCCceE
Confidence 3334432 467999999999999999999 8999999999999876654311 1233556666665
Q ss_pred -----CCEEEEEeCCCCcEEEEEecCC---CCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEe
Q 023864 169 -----QKTGFIYDQNNLNKLEEFTHQM---KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIV 228 (276)
Q Consensus 169 -----~~~v~V~D~~tlk~i~~~~~~~---~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V 228 (276)
+.++-++|.++.+++++++.+. .+=.|.-..++.|+.-.=+..|.+++|.+.++.+.|.=
T Consensus 251 ~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~G 318 (603)
T KOG0318|consen 251 LTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISG 318 (603)
T ss_pred EEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecc
Confidence 5778899999999999998761 23344334466766655578899999999887655543
No 78
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.33 E-value=0.0083 Score=61.38 Aligned_cols=156 Identities=18% Similarity=0.204 Sum_probs=106.7
Q ss_pred EEEEecCCEEEEEcCCCCC---CeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEe------eCCEEEEEeCCC
Q 023864 109 GLLYAENDTLFESTGLYGR---SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW------LQKTGFIYDQNN 179 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~---S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTw------k~~~v~V~D~~t 179 (276)
|+... +|.||..+|.-|. ++|-+||+.+.+-....++.....+-|.+..+++||++-= .=+.+..||+.|
T Consensus 375 ~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t 453 (571)
T KOG4441|consen 375 GVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPET 453 (571)
T ss_pred eeEEE-CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCC
Confidence 77776 5899998887654 4588999999987777777778889999999999999975 236788999976
Q ss_pred Cc--EEEEEecCCCCeeEEeeCCCEEEEECC------CceEEEEcCCCCcEEEEE--EeeeCCEeeeeeeeeEEECCEEE
Q 023864 180 LN--KLEEFTHQMKDGWGLATDGKVLFGSDG------SSMLYQIDPQTLKVIRKD--IVRYKGREVRNLNELEFIKGEVW 249 (276)
Q Consensus 180 lk--~i~~~~~~~~EGWGLT~Dg~~L~vSDG------S~~L~viDp~t~~vi~~I--~V~~~g~pv~~lNELE~idG~ly 249 (276)
-+ .+...+.+ .-|-|++.-+..||+-=| -++|...||++.+...-- .....+.-+.-++.+-|+-|- |
T Consensus 454 ~~W~~~~~M~~~-R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG-~ 531 (571)
T KOG4441|consen 454 NTWTLIAPMNTR-RSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG-F 531 (571)
T ss_pred CceeecCCcccc-cccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEec-c
Confidence 65 44555554 567778888888888444 335788999998775432 222222222223323333222 3
Q ss_pred EEeCCCCCeEEEEeCCCCc
Q 023864 250 ANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 250 ANvw~s~d~I~vIDp~T~~ 268 (276)
-+.-.. +.|-..||+|++
T Consensus 532 ~~~~~l-~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 532 DGNNNL-NTVECYDPETDT 549 (571)
T ss_pred cCcccc-ceeEEcCCCCCc
Confidence 344455 788899999976
No 79
>PHA03098 kelch-like protein; Provisional
Probab=97.33 E-value=0.021 Score=56.77 Aligned_cols=153 Identities=11% Similarity=0.038 Sum_probs=97.5
Q ss_pred EEEEecCCEEEEEcCCCC---CCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEee------CCEEEEEeCCC
Q 023864 109 GLLYAENDTLFESTGLYG---RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL------QKTGFIYDQNN 179 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg---~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk------~~~v~V~D~~t 179 (276)
+++.. +|+||.-+|..+ .+.+.+||+.+++-....++|....+-+.+..+++||+.-=. -+.+.+||+.+
T Consensus 337 ~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t 415 (534)
T PHA03098 337 GVTVF-NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNT 415 (534)
T ss_pred eEEEE-CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCC
Confidence 55555 589998777542 356889999998876655666545566778889999998542 15789999886
Q ss_pred CcE--EEEEecCCCCeeEEeeCCCEEEEECCC---------ceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEE
Q 023864 180 LNK--LEEFTHQMKDGWGLATDGKVLFGSDGS---------SMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEV 248 (276)
Q Consensus 180 lk~--i~~~~~~~~EGWGLT~Dg~~L~vSDGS---------~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~l 248 (276)
.+- +..++.+ ..|-+.+..++.+|+--|. +.++.+||++.+-... ..-..|..+. -+...+|+|
T Consensus 416 ~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~---~~~~~~r~~~-~~~~~~~~i 490 (534)
T PHA03098 416 NKWSKGSPLPIS-HYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTEL---SSLNFPRINA-SLCIFNNKI 490 (534)
T ss_pred CeeeecCCCCcc-ccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeC---CCCCcccccc-eEEEECCEE
Confidence 543 3334443 2444555556678886552 3499999999876432 1111111111 233458888
Q ss_pred EEEeCC-----CCCeEEEEeCCCCc
Q 023864 249 WANVWQ-----VWPCIPYAYLQAFG 268 (276)
Q Consensus 249 yANvw~-----s~d~I~vIDp~T~~ 268 (276)
|+==.. . +.|.+-||++++
T Consensus 491 yv~GG~~~~~~~-~~v~~yd~~~~~ 514 (534)
T PHA03098 491 YVVGGDKYEYYI-NEIEVYDDKTNT 514 (534)
T ss_pred EEEcCCcCCccc-ceeEEEeCCCCE
Confidence 863221 4 689999999865
No 80
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.28 E-value=0.023 Score=55.25 Aligned_cols=154 Identities=8% Similarity=0.035 Sum_probs=89.5
Q ss_pred eEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeC--CEEEEEeCCCCcEEE
Q 023864 108 QGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLNKLE 184 (276)
Q Consensus 108 QGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~--~~v~V~D~~tlk~i~ 184 (276)
.+..|+|||+ |+.+...-|...|..+|++++++.+-..-+.....-....++++|+...-.+ ..++++|.++.+. .
T Consensus 249 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~ 327 (435)
T PRK05137 249 FAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-R 327 (435)
T ss_pred cCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-E
Confidence 4678999984 6544444477889999999998754332221111122344566776655443 3789999877554 3
Q ss_pred EEecCC--CCeeEEeeCCCEEEEEC---CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCE-E-EEEeCCCC
Q 023864 185 EFTHQM--KDGWGLATDGKVLFGSD---GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE-V-WANVWQVW 256 (276)
Q Consensus 185 ~~~~~~--~EGWGLT~Dg~~L~vSD---GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~-l-yANvw~s~ 256 (276)
++.... -..-..++||+.|+++. |..+|+++|+++... +.+.-+ . ......|. ||+ | |+..-...
T Consensus 328 ~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~---~---~~~~p~~spDG~~i~~~~~~~~~ 400 (435)
T PRK05137 328 RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSG---F---LVEGPTWAPNGRVIMFFRQTPGS 400 (435)
T ss_pred EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCC---C---CCCCCeECCCCCEEEEEEccCCC
Confidence 443320 11234789999987643 346899999876543 333221 1 12233455 554 4 44432221
Q ss_pred ---CeEEEEeCCCCcE
Q 023864 257 ---PCIPYAYLQAFGS 269 (276)
Q Consensus 257 ---d~I~vIDp~T~~v 269 (276)
..+.++|...+.+
T Consensus 401 ~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 401 GGAPKLYTVDLTGRNE 416 (435)
T ss_pred CCcceEEEEECCCCce
Confidence 2699999877554
No 81
>PTZ00421 coronin; Provisional
Probab=97.27 E-value=0.018 Score=58.04 Aligned_cols=131 Identities=8% Similarity=0.079 Sum_probs=85.2
Q ss_pred EEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEE---eeC
Q 023864 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVT---WLQ 169 (276)
Q Consensus 95 Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlT---wk~ 169 (276)
.+.++.. .......+.|++||.++.+++ .+..|+.||+.+++.+....-....-...+... ++.++.+- ..+
T Consensus 160 ~~~~l~~-h~~~V~sla~spdG~lLatgs--~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~D 236 (493)
T PTZ00421 160 AVEVIKC-HSDQITSLEWNLDGSLLCTTS--KDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQ 236 (493)
T ss_pred EEEEEcC-CCCceEEEEEECCCCEEEEec--CCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCC
Confidence 4455542 234568999999998887777 778999999999998776543322211222222 34444433 247
Q ss_pred CEEEEEeCCCCc-EEEEEecCCCCeeE---EeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEe
Q 023864 170 KTGFIYDQNNLN-KLEEFTHQMKDGWG---LATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIV 228 (276)
Q Consensus 170 ~~v~V~D~~tlk-~i~~~~~~~~EGWG---LT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V 228 (276)
+.+.+||..+++ .+..+......+.. +.+|++.||++- |+..|.++|..+.+.+.....
T Consensus 237 r~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~ 300 (493)
T PTZ00421 237 RQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY 300 (493)
T ss_pred CeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec
Confidence 899999998765 33444332112222 356889998854 788999999999887765544
No 82
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=97.27 E-value=0.039 Score=51.41 Aligned_cols=127 Identities=14% Similarity=0.163 Sum_probs=78.8
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCC---CeEEEEeCCCCcE----EEEeecCCCceEEEEEEeCCEEEEEE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGR---SSVRRVALETGKV----EAINQMEGSYFGEGLTLLGEKLFQVT 166 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~---S~I~~iDl~tgkv----~~~~~l~~~~FgEGit~~g~~LyqlT 166 (276)
..+...|. +.++- +.+.. ++.||.-.|..+. +.+.+||+.+.+- ....++|.....-+.++.+++||++-
T Consensus 54 ~~~~~lp~-~r~~~-~~~~~-~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~G 130 (323)
T TIGR03548 54 VKDGQLPY-EAAYG-ASVSV-ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGG 130 (323)
T ss_pred EEcccCCc-cccce-EEEEE-CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEe
Confidence 33445554 33331 33333 5789987775432 6788999988764 22335665445567788899999985
Q ss_pred ee-----CCEEEEEeCCCCcE--EEEEecCCCCeeEEeeCCCEEEEECCC-----ceEEEEcCCCCcEE
Q 023864 167 WL-----QKTGFIYDQNNLNK--LEEFTHQMKDGWGLATDGKVLFGSDGS-----SMLYQIDPQTLKVI 223 (276)
Q Consensus 167 wk-----~~~v~V~D~~tlk~--i~~~~~~~~EGWGLT~Dg~~L~vSDGS-----~~L~viDp~t~~vi 223 (276)
=. .+.+.+||+.+.+- +..++.+...+..++.-++.||+--|. ..++.+||++.+-.
T Consensus 131 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 131 GNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 32 46899999876553 333443223444555556678886542 35778999987654
No 83
>PLN02153 epithiospecifier protein
Probab=97.26 E-value=0.032 Score=52.45 Aligned_cols=155 Identities=8% Similarity=-0.004 Sum_probs=91.1
Q ss_pred EEEecCCEEEEEcCCCCC---CeEEEEeCCCCcEEEEeec-----CCCceEEEEEEeCCEEEEEEeeC-----------C
Q 023864 110 LLYAENDTLFESTGLYGR---SSVRRVALETGKVEAINQM-----EGSYFGEGLTLLGEKLFQVTWLQ-----------K 170 (276)
Q Consensus 110 L~~~~dg~LyeStG~yg~---S~I~~iDl~tgkv~~~~~l-----~~~~FgEGit~~g~~LyqlTwk~-----------~ 170 (276)
+... +++||.-.|..+. +.+.+||+++.+-....++ |....+-.++..+++||++-=.+ +
T Consensus 81 ~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 159 (341)
T PLN02153 81 MVAV-GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFR 159 (341)
T ss_pred EEEE-CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccc
Confidence 4444 4789987774333 4789999998875443344 43345567788899999983321 4
Q ss_pred EEEEEeCCCCcEEE--EEe--cCCCCeeEEeeCCCEEEEE---------CC-----CceEEEEcCCCCcEEEEEEeeeCC
Q 023864 171 TGFIYDQNNLNKLE--EFT--HQMKDGWGLATDGKVLFGS---------DG-----SSMLYQIDPQTLKVIRKDIVRYKG 232 (276)
Q Consensus 171 ~v~V~D~~tlk~i~--~~~--~~~~EGWGLT~Dg~~L~vS---------DG-----S~~L~viDp~t~~vi~~I~V~~~g 232 (276)
.+.+||+++.+-.. ... .+...|-+++.-+..+|+- .| .+.|+++||++.+-...-..+.
T Consensus 160 ~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~-- 237 (341)
T PLN02153 160 TIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGA-- 237 (341)
T ss_pred eEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCC--
Confidence 68899998765432 111 0123455555444455552 11 4689999999987654221111
Q ss_pred Eeeee-eeeeEEECCEEEEEeCC--------------CCCeEEEEeCCCCc
Q 023864 233 REVRN-LNELEFIKGEVWANVWQ--------------VWPCIPYAYLQAFG 268 (276)
Q Consensus 233 ~pv~~-lNELE~idG~lyANvw~--------------s~d~I~vIDp~T~~ 268 (276)
.|..+ ...+...+++||+--.. . |.|.+.|+++.+
T Consensus 238 ~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~-n~v~~~d~~~~~ 287 (341)
T PLN02153 238 KPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLS-NEGYALDTETLV 287 (341)
T ss_pred CCCCcceeeeEEECCEEEEECcccCCcccccccccccc-ccEEEEEcCccE
Confidence 11111 12234556776654332 4 579999998854
No 84
>PLN02153 epithiospecifier protein
Probab=97.25 E-value=0.034 Score=52.28 Aligned_cols=156 Identities=13% Similarity=0.144 Sum_probs=92.5
Q ss_pred EEEEecCCEEEEEcCCCC-----CCeEEEEeCCCCcEEEEeecCC--C--ceEEEEEEeCCEEEEEEee-----CCEEEE
Q 023864 109 GLLYAENDTLFESTGLYG-----RSSVRRVALETGKVEAINQMEG--S--YFGEGLTLLGEKLFQVTWL-----QKTGFI 174 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg-----~S~I~~iDl~tgkv~~~~~l~~--~--~FgEGit~~g~~LyqlTwk-----~~~v~V 174 (276)
++... ++.||+-.|..+ .+.+.+||+.+.+-....+++. + ..+-.++..+++||+.-=. -+.+++
T Consensus 27 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~ 105 (341)
T PLN02153 27 GIAVV-GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYS 105 (341)
T ss_pred eEEEE-CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEE
Confidence 56665 478998777532 2579999999987654444332 2 2355677889999998432 257899
Q ss_pred EeCCCCcE--EEEE-----ecCCCCeeEEeeCCCEEEEECCC------------ceEEEEcCCCCcEEEEEEeeeCCEee
Q 023864 175 YDQNNLNK--LEEF-----THQMKDGWGLATDGKVLFGSDGS------------SMLYQIDPQTLKVIRKDIVRYKGREV 235 (276)
Q Consensus 175 ~D~~tlk~--i~~~-----~~~~~EGWGLT~Dg~~L~vSDGS------------~~L~viDp~t~~vi~~I~V~~~g~pv 235 (276)
||+.+.+- +... +.+ ..+-+++..++.||+-=|. +.|.++||++.+-.. +.......+-
T Consensus 106 yd~~t~~W~~~~~~~~~~~p~~-R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~-l~~~~~~~~~ 183 (341)
T PLN02153 106 YDTVKNEWTFLTKLDEEGGPEA-RTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ-LPDPGENFEK 183 (341)
T ss_pred EECCCCEEEEeccCCCCCCCCC-ceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEee-CCCCCCCCCC
Confidence 99987543 3332 222 2344555556678875431 368899999886653 2111000000
Q ss_pred eeeeeeEEECCEEEEEe-------------CCCCCeEEEEeCCCCc
Q 023864 236 RNLNELEFIKGEVWANV-------------WQVWPCIPYAYLQAFG 268 (276)
Q Consensus 236 ~~lNELE~idG~lyANv-------------w~s~d~I~vIDp~T~~ 268 (276)
..---+...+|+||+-= ... +.|.+.||++.+
T Consensus 184 r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~-~~v~~yd~~~~~ 228 (341)
T PLN02153 184 RGGAGFAVVQGKIWVVYGFATSILPGGKSDYES-NAVQFFDPASGK 228 (341)
T ss_pred CCcceEEEECCeEEEEeccccccccCCccceec-CceEEEEcCCCc
Confidence 00012345688888631 125 779999999865
No 85
>PHA02790 Kelch-like protein; Provisional
Probab=97.25 E-value=0.011 Score=58.71 Aligned_cols=152 Identities=11% Similarity=-0.078 Sum_probs=98.6
Q ss_pred EEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEee---CCEEEEEeCCCCcEEE-
Q 023864 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL---QKTGFIYDQNNLNKLE- 184 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk---~~~v~V~D~~tlk~i~- 184 (276)
++... +|+||...|.-+.+++.+||+.+++-....+++....+-+.+..+++||++-=. .+.+..||+.+-+-..
T Consensus 313 ~~v~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~ 391 (480)
T PHA02790 313 SGVPA-NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFG 391 (480)
T ss_pred eEEEE-CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeC
Confidence 45544 589999888545578999999998877666777655566788899999998432 3567889987655432
Q ss_pred -EEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCC-----CCCe
Q 023864 185 -EFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQ-----VWPC 258 (276)
Q Consensus 185 -~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~-----s~d~ 258 (276)
..+.+ ..+-+.+.-++.||+--|. +.+.||++.+-..- ..-..|- .-..+...+|+||+-=.. . +.
T Consensus 392 ~~m~~~-r~~~~~~~~~~~IYv~GG~--~e~ydp~~~~W~~~---~~m~~~r-~~~~~~v~~~~IYviGG~~~~~~~-~~ 463 (480)
T PHA02790 392 PSTYYP-HYKSCALVFGRRLFLVGRN--AEFYCESSNTWTLI---DDPIYPR-DNPELIIVDNKLLLIGGFYRGSYI-DT 463 (480)
T ss_pred CCCCCc-cccceEEEECCEEEEECCc--eEEecCCCCcEeEc---CCCCCCc-cccEEEEECCEEEEECCcCCCccc-ce
Confidence 23333 2333454556688886664 56789988765421 1111111 112345778999975332 3 57
Q ss_pred EEEEeCCCCcE
Q 023864 259 IPYAYLQAFGS 269 (276)
Q Consensus 259 I~vIDp~T~~v 269 (276)
|-+-||++++=
T Consensus 464 ve~Yd~~~~~W 474 (480)
T PHA02790 464 IEVYNNRTYSW 474 (480)
T ss_pred EEEEECCCCeE
Confidence 88899998763
No 86
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.23 E-value=0.016 Score=54.44 Aligned_cols=141 Identities=16% Similarity=0.175 Sum_probs=95.0
Q ss_pred EEE-ecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEec
Q 023864 110 LLY-AENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTH 188 (276)
Q Consensus 110 L~~-~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~ 188 (276)
+.| +.|..++ |+- ..-.||.||-.||+.++++.++..+= .+.+..+-=|+.+-....+..+|+++|++++.+..
T Consensus 149 v~wc~eD~~iL-SSa--dd~tVRLWD~rTgt~v~sL~~~s~Vt--SlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~ 223 (334)
T KOG0278|consen 149 VLWCHEDKCIL-SSA--DDKTVRLWDHRTGTEVQSLEFNSPVT--SLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM 223 (334)
T ss_pred EEEeccCceEE-eec--cCCceEEEEeccCcEEEEEecCCCCc--ceeeccCCCEEEEecCceeEEeccccccceeeccC
Confidence 344 3444455 443 67789999999999999998886633 44554443345555677888899999999999987
Q ss_pred C-CCCeeEEeeCCCEEEEECC-CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeEEE
Q 023864 189 Q-MKDGWGLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVWPCIPY 261 (276)
Q Consensus 189 ~-~~EGWGLT~Dg~~L~vSDG-S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I~v 261 (276)
| .-+--.|.|+. ..||.-| .-.++.+|=.|++.+..- +.-.-.||+-+ -|. ||++||.=-++ ..|..
T Consensus 224 P~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVhcV---rFSPdGE~yAsGSED-GTirl 293 (334)
T KOG0278|consen 224 PCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCV---RFSPDGELYASGSED-GTIRL 293 (334)
T ss_pred ccccccccccCCC-ceEEecCcceEEEEEeccCCceeeec-ccCCCCceEEE---EECCCCceeeccCCC-ceEEE
Confidence 6 33555688877 6666555 668999999999888763 12122355522 133 78888875444 44443
No 87
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0099 Score=56.57 Aligned_cols=125 Identities=11% Similarity=0.049 Sum_probs=89.2
Q ss_pred EEecCCEEEEEcCCCCCCeEEEEeCCCC--cEEEEeecC--CCceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCCcEEEE
Q 023864 111 LYAENDTLFESTGLYGRSSVRRVALETG--KVEAINQME--GSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLEE 185 (276)
Q Consensus 111 ~~~~dg~LyeStG~yg~S~I~~iDl~tg--kv~~~~~l~--~~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tlk~i~~ 185 (276)
+|+|.|-+|..+- +...|..||+..- ..-.+..++ ...=-++|...+ ++...++-..+.++++|+=+..++.+
T Consensus 147 AfDp~GLifA~~~--~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~t 224 (311)
T KOG1446|consen 147 AFDPEGLIFALAN--GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKST 224 (311)
T ss_pred eECCCCcEEEEec--CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeee
Confidence 5777777775433 5559999998753 122333333 222245666664 78888999999999999999999999
Q ss_pred EecCCCCe-----eEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeee
Q 023864 186 FTHQMKDG-----WGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNL 238 (276)
Q Consensus 186 ~~~~~~EG-----WGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~l 238 (276)
|.....+| --+|||++.++.+.+..+|++++.+|++.+....-. ++.|+.-+
T Consensus 225 fs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~ 281 (311)
T KOG1446|consen 225 FSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCV 281 (311)
T ss_pred EeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCcccc
Confidence 97542233 447899999999999999999999999887665543 34444433
No 88
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.22 E-value=0.026 Score=55.13 Aligned_cols=114 Identities=12% Similarity=0.089 Sum_probs=72.2
Q ss_pred EEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeC--CEEEEEeCCCCcEEEE
Q 023864 109 GLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLNKLEE 185 (276)
Q Consensus 109 GL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~--~~v~V~D~~tlk~i~~ 185 (276)
.+.|+|||+ |+.+....|...|..+|++++++.+...-+.....-....++++|+...-.+ ..++++|.++.+. .+
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~ 325 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QR 325 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EE
Confidence 578999985 6554444577789999999998755433332222222333456675554433 3788889887654 34
Q ss_pred EecCC--CCeeEEeeCCCEEEEE-C--CCceEEEEcCCCCcEE
Q 023864 186 FTHQM--KDGWGLATDGKVLFGS-D--GSSMLYQIDPQTLKVI 223 (276)
Q Consensus 186 ~~~~~--~EGWGLT~Dg~~L~vS-D--GS~~L~viDp~t~~vi 223 (276)
+.... ...-.+++||+.|+.. . |...|+++|+++.+..
T Consensus 326 lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~ 368 (429)
T PRK03629 326 ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ 368 (429)
T ss_pred eecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence 43321 1234578999988663 2 4568999999988753
No 89
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.22 E-value=0.021 Score=58.47 Aligned_cols=169 Identities=18% Similarity=0.193 Sum_probs=119.4
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCEEEEEcCCC-C---CCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEe
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLY-G---RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW 167 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~y-g---~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTw 167 (276)
...-+...|+....+ |..+.+ |.||..+|.. | -+.+-+||+.+++=....+|.....+.|++..++.||++-=
T Consensus 312 ~w~~~a~m~~~r~~~--~~~~~~-~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG 388 (571)
T KOG4441|consen 312 EWSSLAPMPSPRCRV--GVAVLN-GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGG 388 (571)
T ss_pred cEeecCCCCcccccc--cEEEEC-CEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEec
Confidence 344555556544444 888874 7999977744 2 26788999999997776788888888899999999999976
Q ss_pred eC-----CEEEEEeCCCCc--EEEEEecCCCCeeEEeeCCCEEEEECC----C---ceEEEEcCCCCcEEEEEEe--eeC
Q 023864 168 LQ-----KTGFIYDQNNLN--KLEEFTHQMKDGWGLATDGKVLFGSDG----S---SMLYQIDPQTLKVIRKDIV--RYK 231 (276)
Q Consensus 168 k~-----~~v~V~D~~tlk--~i~~~~~~~~EGWGLT~Dg~~L~vSDG----S---~~L~viDp~t~~vi~~I~V--~~~ 231 (276)
.+ +.+-.||+.+-+ ..+..... ..|-|.+.-++.||+.=| + +.+...||.|.+-...-+. ...
T Consensus 389 ~dg~~~l~svE~YDp~~~~W~~va~m~~~-r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~ 467 (571)
T KOG4441|consen 389 FDGEKSLNSVECYDPVTNKWTPVAPMLTR-RSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS 467 (571)
T ss_pred cccccccccEEEecCCCCcccccCCCCcc-eeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc
Confidence 55 457789987654 44444443 688899988889998654 3 5789999999877544333 333
Q ss_pred CEeeeeeeeeEEECCEEEEEeCCC----CCeEEEEeCCCCcEE
Q 023864 232 GREVRNLNELEFIKGEVWANVWQV----WPCIPYAYLQAFGSS 270 (276)
Q Consensus 232 g~pv~~lNELE~idG~lyANvw~s----~d~I~vIDp~T~~v~ 270 (276)
+.. +...||+|||-=..+ -+.|-+.||+|.+-.
T Consensus 468 ~~g------~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 468 GFG------VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWT 504 (571)
T ss_pred cce------EEEECCEEEEECCccCCCccceEEEEcCCCCcee
Confidence 333 345678888654432 135889999997744
No 90
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.20 E-value=0.11 Score=48.03 Aligned_cols=157 Identities=18% Similarity=0.200 Sum_probs=83.4
Q ss_pred eEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCC--CCcE----EEEeecC----CCceEEEEEEe--CC
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALE--TGKV----EAINQME----GSYFGEGLTLL--GE 160 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~--tgkv----~~~~~l~----~~~FgEGit~~--g~ 160 (276)
-+|++++|.+...=++|+++.++|++..+.. ....|..++.+ +..+ ..++.++ .+.=-||++.+ ++
T Consensus 53 G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~E--r~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~ 130 (248)
T PF06977_consen 53 GKVLRRIPLDGFGDYEGITYLGNGRYVLSEE--RDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN 130 (248)
T ss_dssp --EEEEEE-SS-SSEEEEEE-STTEEEEEET--TTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTT
T ss_pred CCEEEEEeCCCCCCceeEEEECCCEEEEEEc--CCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCC
Confidence 3789999986544469999998888777654 46677777763 3322 1233443 12224999997 58
Q ss_pred EEEEEEeeCC-EEEEEeC--C--CCcEEEEEec-----CCCCeeEEe--eCCCEE-EEECCCceEEEEcCCCCcEEEEEE
Q 023864 161 KLFQVTWLQK-TGFIYDQ--N--NLNKLEEFTH-----QMKDGWGLA--TDGKVL-FGSDGSSMLYQIDPQTLKVIRKDI 227 (276)
Q Consensus 161 ~LyqlTwk~~-~v~V~D~--~--tlk~i~~~~~-----~~~EGWGLT--~Dg~~L-~vSDGS~~L~viDp~t~~vi~~I~ 227 (276)
+||++..+.- .++-++. . .+........ .+..-=|++ +.-.+| +.||.+..|..+| .++++++...
T Consensus 131 ~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~ 209 (248)
T PF06977_consen 131 RLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLS 209 (248)
T ss_dssp EEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE
T ss_pred EEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEE
Confidence 9999876654 4566664 2 2222221111 112222444 443444 5599999999999 6699998888
Q ss_pred eee--CC--EeeeeeeeeEEE-CCEEEEEe
Q 023864 228 VRY--KG--REVRNLNELEFI-KGEVWANV 252 (276)
Q Consensus 228 V~~--~g--~pv~~lNELE~i-dG~lyANv 252 (276)
... .| +.+.++.-+.+. +|.||+..
T Consensus 210 L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 210 LDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp -STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred eCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 864 22 345566666666 68899765
No 91
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=97.19 E-value=0.0015 Score=42.73 Aligned_cols=39 Identities=18% Similarity=0.144 Sum_probs=34.5
Q ss_pred eCCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCCCeeEEe
Q 023864 158 LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLA 197 (276)
Q Consensus 158 ~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~EGWGLT 197 (276)
++++||+.+|.++.+.++|+++++.+++++.+ .+.++++
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~ 40 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVA 40 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEE
Confidence 46899999999999999999999999999986 5677665
No 92
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=97.11 E-value=0.047 Score=51.68 Aligned_cols=171 Identities=13% Similarity=0.132 Sum_probs=116.0
Q ss_pred eEEEEEEe-cCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEe----
Q 023864 93 IQVVNEFP-HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW---- 167 (276)
Q Consensus 93 ~~Vv~~~P-hd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTw---- 167 (276)
-+.+.+|. |...-| -+.++.+.+... ||. .+.+++.||.+|||++++.+.+.-.-...+...|+.+-..|-
T Consensus 42 GerlGty~GHtGavW--~~Did~~s~~li-TGS-AD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg 117 (327)
T KOG0643|consen 42 GERLGTYDGHTGAVW--CCDIDWDSKHLI-TGS-ADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMG 117 (327)
T ss_pred CceeeeecCCCceEE--EEEecCCcceee-ecc-ccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcC
Confidence 36788885 533444 455554433333 563 678899999999999999998876555566666666655554
Q ss_pred eCCEEEEEeCC-------CCcEEEEEecC----CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEE-EEEEeeeCCEee
Q 023864 168 LQKTGFIYDQN-------NLNKLEEFTHQ----MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVI-RKDIVRYKGREV 235 (276)
Q Consensus 168 k~~~v~V~D~~-------tlk~i~~~~~~----~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi-~~I~V~~~g~pv 235 (276)
+...+.+||.. .-+++-.++.+ ...+||-. ++.|+.-+-+..|..+|..++++. ....+..
T Consensus 118 ~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l--~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~----- 190 (327)
T KOG0643|consen 118 YTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPL--GETIIAGHEDGSISIYDARTGKELVDSDEEHS----- 190 (327)
T ss_pred cceEEEEEEccCChhhhcccCceEEecCCccceeeeeeccc--CCEEEEecCCCcEEEEEcccCceeeechhhhc-----
Confidence 35778889987 33445566543 34577655 889999888899999999997553 3333322
Q ss_pred eeeeeeEEEC-CEEEEEeCCCCCeEEEEeCCCCcEEEEEEe
Q 023864 236 RNLNELEFIK-GEVWANVWQVWPCIPYAYLQAFGSSLVYVT 275 (276)
Q Consensus 236 ~~lNELE~id-G~lyANvw~s~d~I~vIDp~T~~v~l~~~~ 275 (276)
..+|.|.... +.-|+.--.+ ..--.+|..|.++.=.|.+
T Consensus 191 ~~Ind~q~s~d~T~FiT~s~D-ttakl~D~~tl~v~Kty~t 230 (327)
T KOG0643|consen 191 SKINDLQFSRDRTYFITGSKD-TTAKLVDVRTLEVLKTYTT 230 (327)
T ss_pred cccccccccCCcceEEecccC-ccceeeeccceeeEEEeee
Confidence 2788888774 4466665455 6777788888777766654
No 93
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.10 E-value=0.024 Score=55.67 Aligned_cols=150 Identities=13% Similarity=0.072 Sum_probs=90.4
Q ss_pred EEEEecCC-EEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC--EEEEEeCCCCcEEEE
Q 023864 109 GLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLNKLEE 185 (276)
Q Consensus 109 GL~~~~dg-~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~--~v~V~D~~tlk~i~~ 185 (276)
...|+||| +|..+...-|+..|..+|+++++..+-...+.....-....+|++||.+..+.+ .++++|.++.+.. +
T Consensus 237 ~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~-r 315 (419)
T PRK04043 237 VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE-Q 315 (419)
T ss_pred eeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE-e
Confidence 35689997 455444445789999999999986544333322222235566788888876544 7999999887663 2
Q ss_pred EecCCCCeeEEeeCCCEEEE-ECCC--------ceEEEEcCCCCcEEEEEEeeeCCEeeeeeee-eEEE-CCE--EEEEe
Q 023864 186 FTHQMKDGWGLATDGKVLFG-SDGS--------SMLYQIDPQTLKVIRKDIVRYKGREVRNLNE-LEFI-KGE--VWANV 252 (276)
Q Consensus 186 ~~~~~~EGWGLT~Dg~~L~v-SDGS--------~~L~viDp~t~~vi~~I~V~~~g~pv~~lNE-LE~i-dG~--lyANv 252 (276)
+.+.......++|||+.|.. +... ..|+++|+++.+.. .+ +..+ .+| ..|. ||+ +|+..
T Consensus 316 lt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~L--T~~~-----~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 316 VVFHGKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RL--TANG-----VNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred CccCCCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-EC--CCCC-----CcCCeEECCCCCEEEEEEc
Confidence 32221122357899998755 4322 58999999988653 22 2221 122 2233 564 45554
Q ss_pred CCCCCeEEEEeCCCC
Q 023864 253 WQVWPCIPYAYLQAF 267 (276)
Q Consensus 253 w~s~d~I~vIDp~T~ 267 (276)
-.....+.++|..-.
T Consensus 388 ~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 388 LGNQSALGIIRLNYN 402 (419)
T ss_pred cCCcEEEEEEecCCC
Confidence 333145778887653
No 94
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.10 E-value=0.0055 Score=57.93 Aligned_cols=111 Identities=20% Similarity=0.332 Sum_probs=79.5
Q ss_pred ceEEEEecCCEEEEEcCCCCC------CeEEEEeCCCCcEEEEeecCCCc--------------eEEEEEEeCC--EEEE
Q 023864 107 TQGLLYAENDTLFESTGLYGR------SSVRRVALETGKVEAINQMEGSY--------------FGEGLTLLGE--KLFQ 164 (276)
Q Consensus 107 TQGL~~~~dg~LyeStG~yg~------S~I~~iDl~tgkv~~~~~l~~~~--------------FgEGit~~g~--~Lyq 164 (276)
++||++.++|.+|+|.= +. ..|.++|.+ |++.+..++|..+ =-||||+..+ +||.
T Consensus 87 ~Egi~~~~~g~~~is~E--~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~ 163 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSE--GGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA 163 (326)
T ss_pred hhHeEEecCCCEEEEeC--CccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence 57999977899998744 66 899999988 9988887666432 2399999754 6999
Q ss_pred EEeeC---------------CEEEEEeCCC-CcEEEEEecCCC------CeeEEe-----eCCCEEEE--EC-----CCc
Q 023864 165 VTWLQ---------------KTGFIYDQNN-LNKLEEFTHQMK------DGWGLA-----TDGKVLFG--SD-----GSS 210 (276)
Q Consensus 165 lTwk~---------------~~v~V~D~~t-lk~i~~~~~~~~------EGWGLT-----~Dg~~L~v--SD-----GS~ 210 (276)
++... -+++.||+.+ .+..++|.|+.. .+.+++ +|++.|++ +. -..
T Consensus 164 ~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ 243 (326)
T PF13449_consen 164 AMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYK 243 (326)
T ss_pred EECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceE
Confidence 98865 4678899987 667888887732 355543 35554444 21 156
Q ss_pred eEEEEcCCCC
Q 023864 211 MLYQIDPQTL 220 (276)
Q Consensus 211 ~L~viDp~t~ 220 (276)
+|+.+|....
T Consensus 244 ri~~v~l~~a 253 (326)
T PF13449_consen 244 RIYRVDLSDA 253 (326)
T ss_pred EEEEEEcccc
Confidence 8899987654
No 95
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=97.05 E-value=0.036 Score=51.27 Aligned_cols=144 Identities=16% Similarity=0.230 Sum_probs=92.7
Q ss_pred EEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceE------------EEEEEeCCEEEEE---EeeCCE--
Q 023864 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFG------------EGLTLLGEKLFQV---TWLQKT-- 171 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~Fg------------EGit~~g~~Lyql---Twk~~~-- 171 (276)
|-.+. +|.||-- .++.+.|.+||+.++++.++..||..-|. .-++++..-||++ .-.++.
T Consensus 73 G~vVY-ngslYY~--~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~iv 149 (250)
T PF02191_consen 73 GHVVY-NGSLYYN--KYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIV 149 (250)
T ss_pred CeEEE-CCcEEEE--ecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEE
Confidence 44555 4777765 34899999999999999988888865554 5678888888887 333333
Q ss_pred EEEEeCCCCcEEEEEecC-----CCCeeEEeeCCCEEEEECCC----ceE-EEEcCCCCcEEEEEEeeeCCEeeeeeeee
Q 023864 172 GFIYDQNNLNKLEEFTHQ-----MKDGWGLATDGKVLFGSDGS----SML-YQIDPQTLKVIRKDIVRYKGREVRNLNEL 241 (276)
Q Consensus 172 v~V~D~~tlk~i~~~~~~-----~~EGWGLT~Dg~~L~vSDGS----~~L-~viDp~t~~vi~~I~V~~~g~pv~~lNEL 241 (276)
+..+|+++|++.+++.+. .++..=+| ..||+.+.. .+| +.+|..+.+.. .+.+.-. .+...+.-|
T Consensus 150 vskld~~tL~v~~tw~T~~~k~~~~naFmvC---GvLY~~~s~~~~~~~I~yafDt~t~~~~-~~~i~f~-~~~~~~~~l 224 (250)
T PF02191_consen 150 VSKLDPETLSVEQTWNTSYPKRSAGNAFMVC---GVLYATDSYDTRDTEIFYAFDTYTGKEE-DVSIPFP-NPYGNISML 224 (250)
T ss_pred EEeeCcccCceEEEEEeccCchhhcceeeEe---eEEEEEEECCCCCcEEEEEEECCCCcee-ceeeeec-cccCceEee
Confidence 345999999999999754 12222244 478886632 334 77899988775 3444321 122233334
Q ss_pred EEE--CCEEEEEeCCCCCeEEEEe
Q 023864 242 EFI--KGEVWANVWQVWPCIPYAY 263 (276)
Q Consensus 242 E~i--dG~lyANvw~s~d~I~vID 263 (276)
.|- |.+||+ |.. ..++.-|
T Consensus 225 ~YNP~dk~LY~--wd~-G~~v~Y~ 245 (250)
T PF02191_consen 225 SYNPRDKKLYA--WDN-GYQVTYD 245 (250)
T ss_pred eECCCCCeEEE--EEC-CeEEEEE
Confidence 454 667885 444 4555444
No 96
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.05 E-value=0.041 Score=52.10 Aligned_cols=146 Identities=14% Similarity=0.155 Sum_probs=103.5
Q ss_pred EEEecCC-E-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCCEEEEEeCCCCcEEEEE
Q 023864 110 LLYAEND-T-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (276)
Q Consensus 110 L~~~~dg-~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~tlk~i~~~ 186 (276)
|.+.+|- + +|. |- -...+..+|+.+|++.=+..++.+. |+-+.. ||. .++--+++.+++++.+|.+++..|
T Consensus 16 LVV~~dskT~v~i--gS-Hs~~~~avd~~sG~~~We~ilg~Ri--E~sa~vvgdf-VV~GCy~g~lYfl~~~tGs~~w~f 89 (354)
T KOG4649|consen 16 LVVCNDSKTLVVI--GS-HSGIVIAVDPQSGNLIWEAILGVRI--ECSAIVVGDF-VVLGCYSGGLYFLCVKTGSQIWNF 89 (354)
T ss_pred EEEecCCceEEEE--ec-CCceEEEecCCCCcEEeehhhCcee--eeeeEEECCE-EEEEEccCcEEEEEecchhheeee
Confidence 4555553 3 343 31 3456778999999999998898874 555544 555 788889999999999999998888
Q ss_pred ecC--CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEee-eeeeeeEEECCEEEEEeCCCCCeEEEEe
Q 023864 187 THQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREV-RNLNELEFIKGEVWANVWQVWPCIPYAY 263 (276)
Q Consensus 187 ~~~--~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv-~~lNELE~idG~lyANvw~s~d~I~vID 263 (276)
... .+----..+|++-+|...-..+.|.+|+.+..-+-+.+.+- +..+ .-+| -.++.|||++ .. ..++.+.
T Consensus 90 ~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG-~~f~sP~i~---~g~~sly~a~-t~-G~vlavt 163 (354)
T KOG4649|consen 90 VILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG-GTFVSPVIA---PGDGSLYAAI-TA-GAVLAVT 163 (354)
T ss_pred eehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCC-ceeccceec---CCCceEEEEe-cc-ceEEEEc
Confidence 643 11111367899999998888899999999988776654432 2111 1222 3478899998 66 7888888
Q ss_pred CCCC
Q 023864 264 LQAF 267 (276)
Q Consensus 264 p~T~ 267 (276)
++++
T Consensus 164 ~~~~ 167 (354)
T KOG4649|consen 164 KNPY 167 (354)
T ss_pred cCCC
Confidence 8875
No 97
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=97.04 E-value=0.058 Score=49.89 Aligned_cols=151 Identities=15% Similarity=0.207 Sum_probs=108.0
Q ss_pred CEEEEEcCCCCCCeEEEEe----C-CCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecC-
Q 023864 116 DTLFESTGLYGRSSVRRVA----L-ETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ- 189 (276)
Q Consensus 116 g~LyeStG~yg~S~I~~iD----l-~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~- 189 (276)
+++|.-.+..+. .|..|. + ..++..+.+.||-..-|-|-.+.|+-||---.....+..||..+.++..+...+
T Consensus 31 ~~iy~~~~~~~~-~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~~s~~IvkydL~t~~v~~~~~L~~ 109 (250)
T PF02191_consen 31 EKIYVTSGFSGN-TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKYNSRNIVKYDLTTRSVVARRELPG 109 (250)
T ss_pred CCEEEECccCCC-EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEecCCceEEEEECcCCcEEEEEECCc
Confidence 578887775555 777773 4 566777888899777799999999999988889999999999999988665433
Q ss_pred ------CCCeeE------EeeCCCEEEE---ECCC---ceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEE
Q 023864 190 ------MKDGWG------LATDGKVLFG---SDGS---SMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWAN 251 (276)
Q Consensus 190 ------~~EGWG------LT~Dg~~L~v---SDGS---~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyAN 251 (276)
.+..|+ |+-|..=||| +..+ =.|..+||+++++++++.+....+.+.+. =.+=|.|||-
T Consensus 110 A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~~~k~~~~na---FmvCGvLY~~ 186 (250)
T PF02191_consen 110 AGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTSYPKRSAGNA---FMVCGVLYAT 186 (250)
T ss_pred cccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEeccCchhhcce---eeEeeEEEEE
Confidence 012222 7778876666 3332 35788999999999999988655554433 3667889965
Q ss_pred eCCCC---CeEEEEeCCCCcEE
Q 023864 252 VWQVW---PCIPYAYLQAFGSS 270 (276)
Q Consensus 252 vw~s~---d~I~vIDp~T~~v~ 270 (276)
--.+. .--.+.|+.|++..
T Consensus 187 ~s~~~~~~~I~yafDt~t~~~~ 208 (250)
T PF02191_consen 187 DSYDTRDTEIFYAFDTYTGKEE 208 (250)
T ss_pred EECCCCCcEEEEEEECCCCcee
Confidence 54430 23466788776543
No 98
>PHA03098 kelch-like protein; Provisional
Probab=97.02 E-value=0.049 Score=54.20 Aligned_cols=152 Identities=9% Similarity=0.053 Sum_probs=96.9
Q ss_pred EEEEecCCEEEEEcCCCCC----CeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEee-----CCEEEEEeCCC
Q 023864 109 GLLYAENDTLFESTGLYGR----SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL-----QKTGFIYDQNN 179 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~----S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk-----~~~v~V~D~~t 179 (276)
|.+.. ++.||.-+|.-+. +.+..||+.+++-....+++....+-+++..+++||++-=. -+.+.+||+.+
T Consensus 289 ~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~ 367 (534)
T PHA03098 289 GSVVL-NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGE 367 (534)
T ss_pred eEEEE-CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCC
Confidence 66665 4789987774322 46889999999886655566333445778889999998543 35688899876
Q ss_pred CcE--EEEEecCCCCeeEEeeCCCEEEEECC-------CceEEEEcCCCCcEEEEEEe--eeCCEeeeeeeeeEEECCEE
Q 023864 180 LNK--LEEFTHQMKDGWGLATDGKVLFGSDG-------SSMLYQIDPQTLKVIRKDIV--RYKGREVRNLNELEFIKGEV 248 (276)
Q Consensus 180 lk~--i~~~~~~~~EGWGLT~Dg~~L~vSDG-------S~~L~viDp~t~~vi~~I~V--~~~g~pv~~lNELE~idG~l 248 (276)
.+- +...+.+ ..+-+.+.-++.+|+--| .+.+..+||.+.+-...-.. ...+. -+...+|+|
T Consensus 368 ~~W~~~~~lp~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~------~~~~~~~~i 440 (534)
T PHA03098 368 SKWREEPPLIFP-RYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG------CAIYHDGKI 440 (534)
T ss_pred CceeeCCCcCcC-CccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc------eEEEECCEE
Confidence 553 3344444 345555656678888654 26799999998766432211 11111 133567888
Q ss_pred EEEeCCC-------CCeEEEEeCCCCc
Q 023864 249 WANVWQV-------WPCIPYAYLQAFG 268 (276)
Q Consensus 249 yANvw~s-------~d~I~vIDp~T~~ 268 (276)
|+-=..+ -+.+.+-||++++
T Consensus 441 yv~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 441 YVIGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred EEECCccCCCCCcccceEEEecCCCCc
Confidence 8643321 0348889998865
No 99
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.98 E-value=0.011 Score=59.00 Aligned_cols=136 Identities=18% Similarity=0.244 Sum_probs=73.3
Q ss_pred eeEEEEEEec--CCCCCceEEEEecC-CEEEEE------------------cCCCCCCeEEEEeCCCCcEEEEeecCCCc
Q 023864 92 TIQVVNEFPH--DPRAFTQGLLYAEN-DTLFES------------------TGLYGRSSVRRVALETGKVEAINQMEGSY 150 (276)
Q Consensus 92 t~~Vv~~~Ph--d~~aFTQGL~~~~d-g~LyeS------------------tG~yg~S~I~~iDl~tgkv~~~~~l~~~~ 150 (276)
+++|+.+... ++..|-..+-+.+. +.+.-| .|.|| ++|++||+.++++++++.||+.-
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG-~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYG-HSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S---EEEEEETTTTEEEEEEES-TTE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhccccc-CeEEEEECCCCcEeeEEecCCCC
Confidence 4677777655 34555445555554 334432 23456 79999999999999999999641
Q ss_pred eEEEEEEe------CCEEEEEEeeCCEEEEEeC---CCCcEEEEEecC--CCCeeE-------------------EeeCC
Q 023864 151 FGEGLTLL------GEKLFQVTWLQKTGFIYDQ---NNLNKLEEFTHQ--MKDGWG-------------------LATDG 200 (276)
Q Consensus 151 FgEGit~~------g~~LyqlTwk~~~v~V~D~---~tlk~i~~~~~~--~~EGWG-------------------LT~Dg 200 (276)
+.=|.+. ...-|+-.-.+..++.|=. .+.+..+-+..+ --|||. |+.|+
T Consensus 245 -~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 245 -QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp -EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred -CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 1111221 2578888888888887644 333334444433 236773 45689
Q ss_pred CEEEEEC-CCceEEEEc---CCCCcEEEEEEee
Q 023864 201 KVLFGSD-GSSMLYQID---PQTLKVIRKDIVR 229 (276)
Q Consensus 201 ~~L~vSD-GS~~L~viD---p~t~~vi~~I~V~ 229 (276)
++||+|+ +...|...| |..-+++.+|.++
T Consensus 324 rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lG 356 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLG 356 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-B
T ss_pred CEEEEEcccCCcEEEEecCCCCCCcEEeEEEEC
Confidence 9999999 888898887 5567788888876
No 100
>smart00284 OLF Olfactomedin-like domains.
Probab=96.97 E-value=0.034 Score=51.87 Aligned_cols=150 Identities=16% Similarity=0.141 Sum_probs=104.0
Q ss_pred CEEEEEcCC-CCCCeEEEE----eCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecC-
Q 023864 116 DTLFESTGL-YGRSSVRRV----ALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ- 189 (276)
Q Consensus 116 g~LyeStG~-yg~S~I~~i----Dl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~- 189 (276)
++.|..-+. +..+.|+.| |+..++..+++.||...=|-|..+.|+-||---..+..+..||.++.++..+-..+
T Consensus 35 ~~~wv~~~~~~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~ 114 (255)
T smart00284 35 SLYWYMPLNTRVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKFNSHDICRFDLTTETYQKEPLLNG 114 (255)
T ss_pred ceEEEEccccCCCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEecCCccEEEEECCCCcEEEEEecCc
Confidence 467765432 245667776 45677777788899878899999999999997778899999999999886443222
Q ss_pred ------CCCeeE------EeeCCCEEEE---ECCC---ceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEE
Q 023864 190 ------MKDGWG------LATDGKVLFG---SDGS---SMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWAN 251 (276)
Q Consensus 190 ------~~EGWG------LT~Dg~~L~v---SDGS---~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyAN 251 (276)
.+..|| |+-|..=||+ +.++ =-|..+||+|++++.++.+....+.+. |.=.+=|.|||-
T Consensus 115 a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~~~k~sa~---naFmvCGvLY~~ 191 (255)
T smart00284 115 AGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWITTYNKRSAS---NAFMICGILYVT 191 (255)
T ss_pred cccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEcCCCccccc---ccEEEeeEEEEE
Confidence 223343 7778876666 4432 245789999999999999976555544 333667899976
Q ss_pred eC-C-CCC-eEEEEeCCCCc
Q 023864 252 VW-Q-VWP-CIPYAYLQAFG 268 (276)
Q Consensus 252 vw-~-s~d-~I~vIDp~T~~ 268 (276)
.- . ... --.+-|+.|++
T Consensus 192 ~s~~~~~~~I~yayDt~t~~ 211 (255)
T smart00284 192 RSLGSKGEKVFYAYDTNTGK 211 (255)
T ss_pred ccCCCCCcEEEEEEECCCCc
Confidence 52 1 201 24566777754
No 101
>PRK02889 tolB translocation protein TolB; Provisional
Probab=96.97 E-value=0.021 Score=55.67 Aligned_cols=119 Identities=11% Similarity=0.179 Sum_probs=74.0
Q ss_pred eEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC--EEEEEeCCCCcEEE
Q 023864 108 QGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLNKLE 184 (276)
Q Consensus 108 QGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~--~v~V~D~~tlk~i~ 184 (276)
....|++||+ |+..+..-|...|..+|+++++..+...-+.......+..+|+.|+.....++ .++++|.++.+..
T Consensus 287 ~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~- 365 (427)
T PRK02889 287 TEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT- 365 (427)
T ss_pred cCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-
Confidence 3467999985 54434334677899999988876443321221222234445777776655443 6999999877643
Q ss_pred EEecC-CCCeeEEeeCCCEEEE-EC--CCceEEEEcCCCCcEEEEEEe
Q 023864 185 EFTHQ-MKDGWGLATDGKVLFG-SD--GSSMLYQIDPQTLKVIRKDIV 228 (276)
Q Consensus 185 ~~~~~-~~EGWGLT~Dg~~L~v-SD--GS~~L~viDp~t~~vi~~I~V 228 (276)
.+... ..+....++||+.|+. ++ |...|+.+|. +++..+.+..
T Consensus 366 ~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~ 412 (427)
T PRK02889 366 ALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSV 412 (427)
T ss_pred EccCCCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeec
Confidence 33211 2345568899998755 54 5677999998 5666666653
No 102
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.96 E-value=0.031 Score=59.30 Aligned_cols=111 Identities=16% Similarity=0.105 Sum_probs=75.2
Q ss_pred CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCc-------eEEEEEEe------------------CCEEEEEEeeC
Q 023864 115 NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY-------FGEGLTLL------------------GEKLFQVTWLQ 169 (276)
Q Consensus 115 dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~-------FgEGit~~------------------g~~LyqlTwk~ 169 (276)
+|+||.++. .+.|..+|.+|||.+=+....... -+-|++.. ++++|+.|. +
T Consensus 194 gg~lYv~t~---~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~-D 269 (764)
T TIGR03074 194 GDTLYLCTP---HNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTS-D 269 (764)
T ss_pred CCEEEEECC---CCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecC-C
Confidence 589999876 468999999999987776543221 02244443 459999887 8
Q ss_pred CEEEEEeCCCCcEEEEEecCC-----------CCe-eEEee----CCCEEEEEC-C---------CceEEEEcCCCCcEE
Q 023864 170 KTGFIYDQNNLNKLEEFTHQM-----------KDG-WGLAT----DGKVLFGSD-G---------SSMLYQIDPQTLKVI 223 (276)
Q Consensus 170 ~~v~V~D~~tlk~i~~~~~~~-----------~EG-WGLT~----Dg~~L~vSD-G---------S~~L~viDp~t~~vi 223 (276)
++++.+|++|.+++.+|.... +.| +..+. .++.+|+.. + +..|+-+|++|++++
T Consensus 270 g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 270 ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 899999999999998775320 111 22221 245666642 1 457999999999998
Q ss_pred EEEEee
Q 023864 224 RKDIVR 229 (276)
Q Consensus 224 ~~I~V~ 229 (276)
=+...+
T Consensus 350 W~~~~g 355 (764)
T TIGR03074 350 WAWDPG 355 (764)
T ss_pred eEEecC
Confidence 666553
No 103
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.93 E-value=0.026 Score=59.25 Aligned_cols=161 Identities=17% Similarity=0.128 Sum_probs=112.3
Q ss_pred CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCC-ceEEEEEEeCCEEEEEEeeCCEEEEEeCC-CC
Q 023864 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS-YFGEGLTLLGEKLFQVTWLQKTGFIYDQN-NL 180 (276)
Q Consensus 103 ~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~-~FgEGit~~g~~LyqlTwk~~~v~V~D~~-tl 180 (276)
|..| .-++.+|.|.|. ++|.-..=.|.+|+.+||+++....=-+. .++-.+..+++.|+-..| +++|-+||.= .-
T Consensus 435 p~Qf-scvavD~sGelV-~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SW-DkTVRiW~if~s~ 511 (893)
T KOG0291|consen 435 PIQF-SCVAVDPSGELV-CAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSW-DKTVRIWDIFSSS 511 (893)
T ss_pred ceee-eEEEEcCCCCEE-EeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccc-cceEEEEEeeccC
Confidence 5566 677787767765 46644555699999999998766432233 355567778899999998 6889999863 33
Q ss_pred cEEEEEecC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeee------------------CCEeeeeeeee
Q 023864 181 NKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY------------------KGREVRNLNEL 241 (276)
Q Consensus 181 k~i~~~~~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~------------------~g~pv~~lNEL 241 (276)
....+++.. .--+..+.|||+.|-|+-=+.+|.|+|++....+..|.-.. .++++. -|
T Consensus 512 ~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ft---ti 588 (893)
T KOG0291|consen 512 GTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFT---TI 588 (893)
T ss_pred ceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceE---EE
Confidence 455666654 22344567999999997777899999999988887776542 122222 23
Q ss_pred EEE-CCEEEEEeCCCCCeEEEEeCCCCcEEE
Q 023864 242 EFI-KGEVWANVWQVWPCIPYAYLQAFGSSL 271 (276)
Q Consensus 242 E~i-dG~lyANvw~s~d~I~vIDp~T~~v~l 271 (276)
+|. ||..-.+=..+ +.|-.+|..+ +++|
T Consensus 589 ~ySaDG~~IlAgG~s-n~iCiY~v~~-~vll 617 (893)
T KOG0291|consen 589 CYSADGKCILAGGES-NSICIYDVPE-GVLL 617 (893)
T ss_pred EEcCCCCEEEecCCc-ccEEEEECch-hhee
Confidence 343 77655555688 9999999998 5444
No 104
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=96.91 E-value=0.084 Score=49.62 Aligned_cols=187 Identities=13% Similarity=0.150 Sum_probs=107.7
Q ss_pred cccccccCCCCCCCCceeeeEE---EEEEecCCCCCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC-
Q 023864 74 SSNMWIRFPGVDQSPSIYTIQV---VNEFPHDPRAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEG- 148 (276)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~t~~V---v~~~Phd~~aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~- 148 (276)
.+..|-.-.+.+..+.++..+. -+.|.|. +-+.-+.++|+ +.|+.++ .+..|++||+.+..-... .+|+
T Consensus 93 ~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~--spVn~vvlhpnQteLis~d---qsg~irvWDl~~~~c~~~-liPe~ 166 (311)
T KOG0315|consen 93 CDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN--SPVNTVVLHPNQTELISGD---QSGNIRVWDLGENSCTHE-LIPED 166 (311)
T ss_pred ecCeEEEecCCCceEEEEeccCcccchhccCC--CCcceEEecCCcceEEeec---CCCcEEEEEccCCccccc-cCCCC
Confidence 3455555444455444443332 2345552 44567888887 6788653 345799999987644322 3442
Q ss_pred CceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCC------cEEEEEecCCCCeeE----EeeCCCEEEEECCCceEEEEcC
Q 023864 149 SYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNL------NKLEEFTHQMKDGWG----LATDGKVLFGSDGSSMLYQIDP 217 (276)
Q Consensus 149 ~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tl------k~i~~~~~~~~EGWG----LT~Dg~~L~vSDGS~~L~viDp 217 (276)
.-|-..+++.. +.....-...|.++|++.-+. +++.+|+ +.+|++ |+||+|+|-.+-...++.+++.
T Consensus 167 ~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~--ah~~~il~C~lSPd~k~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 167 DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQ--AHNGHILRCLLSPDVKYLATCSSDKTVKIWNT 244 (311)
T ss_pred CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhee--cccceEEEEEECCCCcEEEeecCCceEEEEec
Confidence 45667777753 444555556688999997553 3333443 458888 5799999988777889999999
Q ss_pred CCCcEEEEEEeeeCCEeeeeeeeeEE-ECCEEEEEeCCCCCeEEEEeCCCCcEEEEE
Q 023864 218 QTLKVIRKDIVRYKGREVRNLNELEF-IKGEVWANVWQVWPCIPYAYLQAFGSSLVY 273 (276)
Q Consensus 218 ~t~~vi~~I~V~~~g~pv~~lNELE~-idG~lyANvw~s~d~I~vIDp~T~~v~l~~ 273 (276)
++| ...+.....+.+=+. +-.+ .||+-.+.- .+|+.+-.=|+++++.+-.|
T Consensus 245 ~~~-~kle~~l~gh~rWvW---dc~FS~dg~YlvTa-ssd~~~rlW~~~~~k~v~qy 296 (311)
T KOG0315|consen 245 DDF-FKLELVLTGHQRWVW---DCAFSADGEYLVTA-SSDHTARLWDLSAGKEVRQY 296 (311)
T ss_pred CCc-eeeEEEeecCCceEE---eeeeccCccEEEec-CCCCceeecccccCceeeec
Confidence 999 333333221111110 0111 155422222 33144555577887765443
No 105
>PHA02790 Kelch-like protein; Provisional
Probab=96.90 E-value=0.021 Score=56.75 Aligned_cols=108 Identities=11% Similarity=0.098 Sum_probs=74.9
Q ss_pred EEEEecCCEEEEEcCCCCC-CeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcE--EEE
Q 023864 109 GLLYAENDTLFESTGLYGR-SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNK--LEE 185 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~-S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~--i~~ 185 (276)
+.... +|+||..+|..+. +.+.+||+++++-....+++...++-+++..+++||++- +.+.+||+++-+- +..
T Consensus 357 ~~~~~-~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~ 432 (480)
T PHA02790 357 AVASI-NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWTLIDD 432 (480)
T ss_pred EEEEE-CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCCCcEeEcCC
Confidence 44444 5899998886543 568899999998766666775555667888999999985 5678899876543 444
Q ss_pred EecCCCCeeEEeeCCCEEEEECCC------ceEEEEcCCCCc
Q 023864 186 FTHQMKDGWGLATDGKVLFGSDGS------SMLYQIDPQTLK 221 (276)
Q Consensus 186 ~~~~~~EGWGLT~Dg~~L~vSDGS------~~L~viDp~t~~ 221 (276)
.+.+ ..+-|++.-+..||+-=|. +.+...||++.+
T Consensus 433 m~~~-r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 433 PIYP-RDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CCCC-ccccEEEEECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 4444 4566777667778886552 456667776654
No 106
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.87 E-value=0.069 Score=50.79 Aligned_cols=142 Identities=15% Similarity=0.165 Sum_probs=91.2
Q ss_pred CCceEEEEecCCEEEEEcCC---------CCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeCCEEE
Q 023864 105 AFTQGLLYAENDTLFESTGL---------YGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGF 173 (276)
Q Consensus 105 aFTQGL~~~~dg~LyeStG~---------yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~ 173 (276)
....=+.++++|.+|.++-. +..-+|.++|+. |++++.. .+.-.++-||++. ++.||+.....++++
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~-~~~~~~~NGla~SpDg~tly~aDT~~~~i~ 188 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLL-DDDLTIPNGLAFSPDGKTLYVADTPANRIH 188 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEee-cCcEEecCceEECCCCCEEEEEeCCCCeEE
Confidence 44455667788999988876 223479999984 4443332 1224455677774 679999999999999
Q ss_pred EEeCC--CCcEEEE---E--ec--CCCCeeEEeeCCCEEEEEC--CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeE
Q 023864 174 IYDQN--NLNKLEE---F--TH--QMKDGWGLATDGKVLFGSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELE 242 (276)
Q Consensus 174 V~D~~--tlk~i~~---~--~~--~~~EGWGLT~Dg~~L~vSD--GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE 242 (276)
.||.+ +..+-++ + .. +.++|..+..||. ||++- |...|..++|+ ++.+++|.+-. ....+++
T Consensus 189 r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~--~~~t~~~--- 261 (307)
T COG3386 189 RYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPD-GKLLGEIKLPV--KRPTNPA--- 261 (307)
T ss_pred EEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCC-CcEEEEEECCC--CCCccce---
Confidence 99765 3333221 2 22 3567766766664 55443 45699999999 99999998863 1222332
Q ss_pred EEC---CEEEEEeCCC
Q 023864 243 FIK---GEVWANVWQV 255 (276)
Q Consensus 243 ~id---G~lyANvw~s 255 (276)
+.+ +.||+.--.+
T Consensus 262 FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 262 FGGPDLNTLYITSARS 277 (307)
T ss_pred EeCCCcCEEEEEecCC
Confidence 444 4688666444
No 107
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=96.85 E-value=0.022 Score=54.74 Aligned_cols=133 Identities=14% Similarity=0.092 Sum_probs=89.7
Q ss_pred CceeeeEEEEEEecCCCCCceEEEEecCCE-EEEEcCCCCCCe------------EEEEeCCCCcEEEEeecCCCceEEE
Q 023864 88 PSIYTIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSS------------VRRVALETGKVEAINQMEGSYFGEG 154 (276)
Q Consensus 88 ~~~~t~~Vv~~~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S~------------I~~iDl~tgkv~~~~~l~~~~FgEG 154 (276)
.|++...-+..+.....+=..||++. ||+ -|+++- +++. =-.+|.++++++. ..--|+|+
T Consensus 135 ~P~WkPpFIs~la~eDRCHLNGlA~~-~g~p~yVTa~--~~sD~~~gWR~~~~~gG~vidv~s~evl~----~GLsmPhS 207 (335)
T TIGR03032 135 VPLWKPPFISKLAPEDRCHLNGMALD-DGEPRYVTAL--SQSDVADGWREGRRDGGCVIDIPSGEVVA----SGLSMPHS 207 (335)
T ss_pred ccccCCccccccCccCceeecceeee-CCeEEEEEEe--eccCCcccccccccCCeEEEEeCCCCEEE----cCccCCcC
Confidence 34455555666644456667999998 465 676542 3321 2236666666543 23446666
Q ss_pred EEEeCCEEEEEEeeCCEEEEEeCCCCc--EEEEEecCCCCeeEEeeCCCEEEEECC----C----------------ceE
Q 023864 155 LTLLGEKLFQVTWLQKTGFIYDQNNLN--KLEEFTHQMKDGWGLATDGKVLFGSDG----S----------------SML 212 (276)
Q Consensus 155 it~~g~~LyqlTwk~~~v~V~D~~tlk--~i~~~~~~~~EGWGLT~Dg~~L~vSDG----S----------------~~L 212 (276)
--+++++||++++..+.+..+|+++.+ .+..++ +..-||...|..+||+-. + .-|
T Consensus 208 PRWhdgrLwvldsgtGev~~vD~~~G~~e~Va~vp---G~~rGL~f~G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv 284 (335)
T TIGR03032 208 PRWYQGKLWLLNSGRGELGYVDPQAGKFQPVAFLP---GFTRGLAFAGDFAFVGLSKLRESRVFGGLPIEERLDALGCGV 284 (335)
T ss_pred CcEeCCeEEEEECCCCEEEEEcCCCCcEEEEEECC---CCCcccceeCCEEEEEeccccCCCCcCCCchhhhhhhhcccE
Confidence 778899999999999999999987664 555554 233355555999999642 2 147
Q ss_pred EEEcCCCCcEEEEEEeee
Q 023864 213 YQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 213 ~viDp~t~~vi~~I~V~~ 230 (276)
.+||..|+.+++.+....
T Consensus 285 ~vidl~tG~vv~~l~feg 302 (335)
T TIGR03032 285 AVIDLNSGDVVHWLRFEG 302 (335)
T ss_pred EEEECCCCCEEEEEEeCC
Confidence 899999999998887763
No 108
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=96.81 E-value=0.083 Score=53.68 Aligned_cols=158 Identities=15% Similarity=0.168 Sum_probs=108.7
Q ss_pred EEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCC--ceEEEEEEeCCEEEEEEeeCCEEEEE
Q 023864 98 EFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS--YFGEGLTLLGEKLFQVTWLQKTGFIY 175 (276)
Q Consensus 98 ~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~--~FgEGit~~g~~LyqlTwk~~~v~V~ 175 (276)
.-+|...-| +|.++||++=+.+++ ++-++++||..+++++++..++.. -==.|+-+.+++|..+. .++.+..+
T Consensus 231 ~~aHkGsIf--alsWsPDs~~~~T~S--aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVS-l~G~in~l 305 (603)
T KOG0318|consen 231 SDAHKGSIF--ALSWSPDSTQFLTVS--ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVS-LSGTINYL 305 (603)
T ss_pred CCCccccEE--EEEECCCCceEEEec--CCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEE-cCcEEEEe
Confidence 446877777 999999986555555 678999999999999999988865 22346666777777665 46788889
Q ss_pred eCCCCcEEEEEec-C-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEEC-CEEEEEe
Q 023864 176 DQNNLNKLEEFTH-Q-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK-GEVWANV 252 (276)
Q Consensus 176 D~~tlk~i~~~~~-~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~id-G~lyANv 252 (276)
++...+++..+.= . .-.-.++.+||++||-.+-...|.-+|-.++.--+.. + .++ -.+++-|...+ |+|+--=
T Consensus 306 n~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~--g-~~h-~nqI~~~~~~~~~~~~t~g 381 (603)
T KOG0318|consen 306 NPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLA--G-KGH-TNQIKGMAASESGELFTIG 381 (603)
T ss_pred cccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccc--c-ccc-cceEEEEeecCCCcEEEEe
Confidence 9999998887741 1 1133346789999999888889999998776432211 0 000 12444455555 6666444
Q ss_pred CCCCCeEEEEeCCC
Q 023864 253 WQVWPCIPYAYLQA 266 (276)
Q Consensus 253 w~s~d~I~vIDp~T 266 (276)
++ |.+-+|+.+-
T Consensus 382 -~D-d~l~~~~~~~ 393 (603)
T KOG0318|consen 382 -WD-DTLRVISLKD 393 (603)
T ss_pred -cC-CeEEEEeccc
Confidence 45 7888886643
No 109
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=96.80 E-value=0.051 Score=47.76 Aligned_cols=114 Identities=16% Similarity=0.140 Sum_probs=75.7
Q ss_pred CCCCeEEEEeCCCCcEEEEeecCCCceEEEEEE--eCCEEEEEE-eeCCEEEEEeCCCCcEEEEEecCCCCeeEEeeCCC
Q 023864 125 YGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVT-WLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGK 201 (276)
Q Consensus 125 yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~--~g~~LyqlT-wk~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~ 201 (276)
||+..|..++..... ...+.+...-=-..++. .++++.++. ....++.+||.+ .+++.+++.......-.+|+|+
T Consensus 36 ~~~~~l~~~~~~~~~-~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~~~~n~i~wsP~G~ 113 (194)
T PF08662_consen 36 YGEFELFYLNEKNIP-VESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGTQPRNTISWSPDGR 113 (194)
T ss_pred EeeEEEEEEecCCCc-cceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecCCCceEEEECCCCC
Confidence 577788888776654 35555554311234444 356777664 345689999996 7777777643223455779999
Q ss_pred EEEEEC-C--CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCE
Q 023864 202 VLFGSD-G--SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE 247 (276)
Q Consensus 202 ~L~vSD-G--S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~ 247 (276)
.|.++. | ...|.++|.++.+.+.+..-. ..+.++|. ||+
T Consensus 114 ~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-------~~t~~~WsPdGr 156 (194)
T PF08662_consen 114 FLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-------DATDVEWSPDGR 156 (194)
T ss_pred EEEEEEccCCCcEEEEEECCCCEEeeccccC-------cEEEEEEcCCCC
Confidence 999875 3 457999999988887665432 34667787 565
No 110
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.78 E-value=0.062 Score=51.36 Aligned_cols=128 Identities=16% Similarity=0.166 Sum_probs=92.4
Q ss_pred eeEEEEEEecC-CCCCceEEEEecCC-EEEEEcCCC------C---------CCeEEEEeCCCCcEEEEeecC-------
Q 023864 92 TIQVVNEFPHD-PRAFTQGLLYAEND-TLFESTGLY------G---------RSSVRRVALETGKVEAINQME------- 147 (276)
Q Consensus 92 t~~Vv~~~Phd-~~aFTQGL~~~~dg-~LyeStG~y------g---------~S~I~~iDl~tgkv~~~~~l~------- 147 (276)
+|+.+.++|-. -.+ .=|.+.+|| +|.+..|.- | +++|.++|..+|+++.+..||
T Consensus 87 ~~~ri~E~~s~GIGP--Hel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGP--HELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred CcEEEeEecCCCcCh--hhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 67888888731 111 135677887 788877742 1 267888899999887775542
Q ss_pred --------------------------------------------------CCceEEEEEEeC--CEEEEEEeeCCEEEEE
Q 023864 148 --------------------------------------------------GSYFGEGLTLLG--EKLFQVTWLQKTGFIY 175 (276)
Q Consensus 148 --------------------------------------------------~~~FgEGit~~g--~~LyqlTwk~~~v~V~ 175 (276)
-+-|+.-|++.. +.+.+..=+.+.+.+|
T Consensus 165 iRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 165 IRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred eeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence 012444566643 3566777788999999
Q ss_pred eCCCCcEEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEE
Q 023864 176 DQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVI 223 (276)
Q Consensus 176 D~~tlk~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi 223 (276)
|.++.+.++..+.+ ++.|+++.++-+.+|+|...+..+++.+.+..
T Consensus 245 d~~tg~~~~~~~l~--D~cGva~~~~~f~~ssG~G~~~~~~~~~~~~~ 290 (305)
T PF07433_consen 245 DAATGRLLGSVPLP--DACGVAPTDDGFLVSSGQGQLIRLSPDGPQPR 290 (305)
T ss_pred ECCCCCEeeccccC--ceeeeeecCCceEEeCCCccEEEccCcccccc
Confidence 99999999999875 99999887777888999999988888776554
No 111
>PRK01029 tolB translocation protein TolB; Provisional
Probab=96.76 E-value=0.1 Score=51.32 Aligned_cols=154 Identities=16% Similarity=0.106 Sum_probs=87.7
Q ss_pred EEecCCE----EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeC--CEEEE--EeCCCC--
Q 023864 111 LYAENDT----LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFI--YDQNNL-- 180 (276)
Q Consensus 111 ~~~~dg~----LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~--~~v~V--~D~~tl-- 180 (276)
.|+|||+ +|.|.- -|...|.+.|+++|+..+-..++...+.--...+|++|..+.... ..+++ +|.++.
T Consensus 191 ~wSPDG~~~~~~y~S~~-~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~ 269 (428)
T PRK01029 191 TWMHIGSGFPYLYVSYK-LGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI 269 (428)
T ss_pred eEccCCCceEEEEEEcc-CCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC
Confidence 6899863 346543 378899999999998766666776666555666777877666432 24555 465442
Q ss_pred cEEEEEec---CCCCeeEEeeCCCEE-EEEC--CCceEEEEcCCC-CcEEEEEEeeeCCEeeeeeeeeEEE-CCE--EEE
Q 023864 181 NKLEEFTH---QMKDGWGLATDGKVL-FGSD--GSSMLYQIDPQT-LKVIRKDIVRYKGREVRNLNELEFI-KGE--VWA 250 (276)
Q Consensus 181 k~i~~~~~---~~~EGWGLT~Dg~~L-~vSD--GS~~L~viDp~t-~~vi~~I~V~~~g~pv~~lNELE~i-dG~--lyA 250 (276)
.....+.. .....-.++|||+.| |++| |..+|+++|... ....+.+.-. +..+ .+..|. ||+ +|+
T Consensus 270 g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~--~~~~---~~p~wSPDG~~Laf~ 344 (428)
T PRK01029 270 GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK--YRNS---SCPAWSPDGKKIAFC 344 (428)
T ss_pred CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC--CCCc---cceeECCCCCEEEEE
Confidence 12222221 111223578999865 6676 667899988643 2222233221 1111 122243 554 344
Q ss_pred EeCCCCCeEEEEeCCCCcEE
Q 023864 251 NVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 251 Nvw~s~d~I~vIDp~T~~v~ 270 (276)
..-.....|.++|+++++..
T Consensus 345 ~~~~g~~~I~v~dl~~g~~~ 364 (428)
T PRK01029 345 SVIKGVRQICVYDLATGRDY 364 (428)
T ss_pred EcCCCCcEEEEEECCCCCeE
Confidence 33222157999999987653
No 112
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=96.74 E-value=0.023 Score=53.79 Aligned_cols=120 Identities=16% Similarity=0.174 Sum_probs=89.9
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCE
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKT 171 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~ 171 (276)
+.++.+.|+- .+.+..-++++|||.|..|.| .+..+.-||++.+|-+.. ++...---.+++..++.|.+---+..
T Consensus 181 ~~~l~~~~~g-h~~~v~t~~vSpDGslcasGg--kdg~~~LwdL~~~k~lys--l~a~~~v~sl~fspnrywL~~at~~s 255 (315)
T KOG0279|consen 181 NCQLRTTFIG-HSGYVNTVTVSPDGSLCASGG--KDGEAMLWDLNEGKNLYS--LEAFDIVNSLCFSPNRYWLCAATATS 255 (315)
T ss_pred Ccchhhcccc-ccccEEEEEECCCCCEEecCC--CCceEEEEEccCCceeEe--ccCCCeEeeEEecCCceeEeeccCCc
Confidence 4566667764 567778899999999999988 778888999999986554 44433334678889999999999999
Q ss_pred EEEEeCCCCcEEEEEecC-C--------CCeeEE--eeCCCEEEEECCCceEEEEc
Q 023864 172 GFIYDQNNLNKLEEFTHQ-M--------KDGWGL--ATDGKVLFGSDGSSMLYQID 216 (276)
Q Consensus 172 v~V~D~~tlk~i~~~~~~-~--------~EGWGL--T~Dg~~L~vSDGS~~L~viD 216 (276)
+-|+|.++.+.+.++..+ . ++..-| .+||+.||.-+-++-|.++-
T Consensus 256 IkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 256 IKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred eEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 999999999998887643 1 112223 46899999977666665543
No 113
>PRK01742 tolB translocation protein TolB; Provisional
Probab=96.66 E-value=0.074 Score=51.80 Aligned_cols=112 Identities=10% Similarity=0.059 Sum_probs=67.3
Q ss_pred EEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC--EEEEEeCCCCcEEEE
Q 023864 109 GLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLNKLEE 185 (276)
Q Consensus 109 GL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~--~v~V~D~~tlk~i~~ 185 (276)
...|+|||+ |+.+...-|...|..+|++++++.+-..-+.....-....++.+|+.....++ .++.+|..+.+. ..
T Consensus 252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~ 330 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SL 330 (429)
T ss_pred ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EE
Confidence 578999985 55443333666788999998876443221222222233445567777665555 455556555433 22
Q ss_pred EecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEE
Q 023864 186 FTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVI 223 (276)
Q Consensus 186 ~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi 223 (276)
+... ...-.+++||+.|++..+ +.+..+|..+.+..
T Consensus 331 l~~~-~~~~~~SpDG~~ia~~~~-~~i~~~Dl~~g~~~ 366 (429)
T PRK01742 331 VGGR-GYSAQISADGKTLVMING-DNVVKQDLTSGSTE 366 (429)
T ss_pred ecCC-CCCccCCCCCCEEEEEcC-CCEEEEECCCCCeE
Confidence 2211 112236889999988755 67888999988754
No 114
>PLN02193 nitrile-specifier protein
Probab=96.63 E-value=0.14 Score=50.84 Aligned_cols=150 Identities=11% Similarity=0.009 Sum_probs=89.1
Q ss_pred CCEEEEEcCCCC---CCeEEEEeCCCCcEEEEeec---CCCceEEEEEEeCCEEEEEEee-----CCEEEEEeCCCCcEE
Q 023864 115 NDTLFESTGLYG---RSSVRRVALETGKVEAINQM---EGSYFGEGLTLLGEKLFQVTWL-----QKTGFIYDQNNLNKL 183 (276)
Q Consensus 115 dg~LyeStG~yg---~S~I~~iDl~tgkv~~~~~l---~~~~FgEGit~~g~~LyqlTwk-----~~~v~V~D~~tlk~i 183 (276)
+++||.-.|..+ -+.+.+||+++.+-....++ |....+-.++..+++||+.-=. -+.+.+||+.+.+-.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 478998777433 26799999999876554444 3334455778889999998532 256789998876543
Q ss_pred EEEec-----CCCCeeEEeeCCCEEEEE---CC--CceEEEEcCCCCcEEEEEEeeeCCEeeee-eeeeEEECCEEEEEe
Q 023864 184 EEFTH-----QMKDGWGLATDGKVLFGS---DG--SSMLYQIDPQTLKVIRKDIVRYKGREVRN-LNELEFIKGEVWANV 252 (276)
Q Consensus 184 ~~~~~-----~~~EGWGLT~Dg~~L~vS---DG--S~~L~viDp~t~~vi~~I~V~~~g~pv~~-lNELE~idG~lyANv 252 (276)
. ++. ....+-+++.-+..+|+- +| .+.|+++|+++.+-.+.-..+. .|..+ ---+..++++||+--
T Consensus 308 ~-~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~--~P~~R~~~~~~~~~~~iyv~G 384 (470)
T PLN02193 308 H-CSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGV--RPSERSVFASAAVGKHIVIFG 384 (470)
T ss_pred e-CCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCC--CCCCcceeEEEEECCEEEEEC
Confidence 2 111 113444554433345442 33 4789999999987654322111 11111 112335566666433
Q ss_pred C--------------CCCCeEEEEeCCCCc
Q 023864 253 W--------------QVWPCIPYAYLQAFG 268 (276)
Q Consensus 253 w--------------~s~d~I~vIDp~T~~ 268 (276)
. .. |.+.+.|++|.+
T Consensus 385 G~~~~~~~~~~~~~~~~-ndv~~~D~~t~~ 413 (470)
T PLN02193 385 GEIAMDPLAHVGPGQLT-DGTFALDTETLQ 413 (470)
T ss_pred CccCCccccccCcccee-ccEEEEEcCcCE
Confidence 3 23 568999999865
No 115
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=96.59 E-value=0.36 Score=49.35 Aligned_cols=161 Identities=11% Similarity=-0.025 Sum_probs=109.9
Q ss_pred cCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCCEEEEEeCCC
Q 023864 101 HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNN 179 (276)
Q Consensus 101 hd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~t 179 (276)
|+..-+ .-++++ +|.+. +|. +.+.|+.||..+++.+...-.+..-=--++.+. ++.+++.--.+.++.|+|.++
T Consensus 206 ~~~~~~-~~~q~~-~~~~~--~~s-~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 206 TDDHVV-LCLQLH-DGFFK--SGS-DDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST 280 (537)
T ss_pred cCcchh-hhheee-cCeEE--ecC-CCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC
Confidence 433434 345565 46666 332 678899999999998877544432112255665 355555666799999999999
Q ss_pred CcEEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEE-eeeCCEeeeeeeeeEEECCEEEEEeCCCCCe
Q 023864 180 LNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDI-VRYKGREVRNLNELEFIKGEVWANVWQVWPC 258 (276)
Q Consensus 180 lk~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~-V~~~g~pv~~lNELE~idG~lyANvw~s~d~ 258 (276)
.+-+..+.....-+--++-++..+...-..++|.++|.++.+.++.+. .+ ..+|++.+.++++++.. ++ ..
T Consensus 281 g~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~------~~V~~v~~~~~~lvsgs-~d-~~ 352 (537)
T KOG0274|consen 281 GECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHT------GPVNCVQLDEPLLVSGS-YD-GT 352 (537)
T ss_pred CcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEecccc------ccEEEEEecCCEEEEEe-cC-ce
Confidence 999999984312222345444444443468999999999999988877 33 26778888888888777 56 78
Q ss_pred EEEEeCCCCcEEEEEEe
Q 023864 259 IPYAYLQAFGSSLVYVT 275 (276)
Q Consensus 259 I~vIDp~T~~v~l~~~~ 275 (276)
|.|.|+.+++ -|.+++
T Consensus 353 v~VW~~~~~~-cl~sl~ 368 (537)
T KOG0274|consen 353 VKVWDPRTGK-CLKSLS 368 (537)
T ss_pred EEEEEhhhce-eeeeec
Confidence 9999999844 445543
No 116
>smart00284 OLF Olfactomedin-like domains.
Probab=96.57 E-value=0.16 Score=47.35 Aligned_cols=145 Identities=12% Similarity=0.197 Sum_probs=90.8
Q ss_pred EEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceE------------EEEEEeCCEEEEE---EeeCCEE-
Q 023864 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFG------------EGLTLLGEKLFQV---TWLQKTG- 172 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~Fg------------EGit~~g~~Lyql---Twk~~~v- 172 (276)
|..+. +|.||.- .++...|.+||+.++++..+..||..-|. .-++++.+-||++ ...++.+
T Consensus 78 G~VVY-ngslYY~--~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~iv 154 (255)
T smart00284 78 GVVVY-NGSLYFN--KFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIV 154 (255)
T ss_pred cEEEE-CceEEEE--ecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEE
Confidence 55666 4888875 44788999999999999888878743222 4678888888888 3333333
Q ss_pred -EEEeCCCCcEEEEEecC-----CCCeeEEeeCCCEEEEECC----Cce-EEEEcCCCCcEEEEEEeeeCCEeeeeeeee
Q 023864 173 -FIYDQNNLNKLEEFTHQ-----MKDGWGLATDGKVLFGSDG----SSM-LYQIDPQTLKVIRKDIVRYKGREVRNLNEL 241 (276)
Q Consensus 173 -~V~D~~tlk~i~~~~~~-----~~EGWGLT~Dg~~L~vSDG----S~~-L~viDp~t~~vi~~I~V~~~g~pv~~lNEL 241 (276)
..+|+.||++++++.++ .++..=+| ..||+.+. ..+ -+..|+.|.+... +.+.-.. +...+.-|
T Consensus 155 vSkLnp~tL~ve~tW~T~~~k~sa~naFmvC---GvLY~~~s~~~~~~~I~yayDt~t~~~~~-~~i~f~n-~y~~~s~l 229 (255)
T smart00284 155 ISKLNPATLTIENTWITTYNKRSASNAFMIC---GILYVTRSLGSKGEKVFYAYDTNTGKEGH-LDIPFEN-MYEYISML 229 (255)
T ss_pred EEeeCcccceEEEEEEcCCCcccccccEEEe---eEEEEEccCCCCCcEEEEEEECCCCccce-eeeeecc-ccccceec
Confidence 46999999999998754 22222245 47888762 333 4778999876543 3333211 12223223
Q ss_pred EEE--CCEEEEEeCCCCCeEEEEeC
Q 023864 242 EFI--KGEVWANVWQVWPCIPYAYL 264 (276)
Q Consensus 242 E~i--dG~lyANvw~s~d~I~vIDp 264 (276)
.|- |.+||| |.. ..++.-|.
T Consensus 230 ~YNP~d~~LY~--wdn-g~~l~Y~v 251 (255)
T smart00284 230 DYNPNDRKLYA--WNN-GHLVHYDI 251 (255)
T ss_pred eeCCCCCeEEE--EeC-CeEEEEEE
Confidence 343 667885 545 55555443
No 117
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=96.55 E-value=0.0039 Score=62.18 Aligned_cols=136 Identities=21% Similarity=0.175 Sum_probs=93.4
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCC
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQK 170 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~ 170 (276)
+-+||++|.|...+. .-+.|-++|+=|+|+- +++++++|+...+-.+..+.-+...=---++++ ++..+.+--.++
T Consensus 331 s~kvvqeYd~hLg~i-~~i~F~~~g~rFissS--Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN 407 (503)
T KOG0282|consen 331 SGKVVQEYDRHLGAI-LDITFVDEGRRFISSS--DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDN 407 (503)
T ss_pred chHHHHHHHhhhhhe-eeeEEccCCceEeeec--cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCc
Confidence 346788888877776 7778888888888877 888999999988755443322221111125554 356666666677
Q ss_pred EEEEEeCCC---CcEEEEEecCCCCeeE----EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeee
Q 023864 171 TGFIYDQNN---LNKLEEFTHQMKDGWG----LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 171 ~v~V~D~~t---lk~i~~~~~~~~EGWG----LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~ 230 (276)
.+.+|.+.. +.+.+.|.=-+-.|++ +++||.+|.-.|+..+++++|-+|-+++++++..+
T Consensus 408 ~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~ 474 (503)
T KOG0282|consen 408 YIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD 474 (503)
T ss_pred eEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCC
Confidence 777776432 2223334311234444 68999999999999999999999999999888874
No 118
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=96.54 E-value=0.31 Score=46.38 Aligned_cols=163 Identities=10% Similarity=0.018 Sum_probs=101.1
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCCEE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTG 172 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~~v 172 (276)
.+++.|.- ..-|.+++..++||....|++ -+-.++.||+++|+..++..-... ---++++. +++-.+---+++++
T Consensus 54 ~~~r~~~G-HsH~v~dv~~s~dg~~alS~s--wD~~lrlWDl~~g~~t~~f~GH~~-dVlsva~s~dn~qivSGSrDkTi 129 (315)
T KOG0279|consen 54 VPVRRLTG-HSHFVSDVVLSSDGNFALSAS--WDGTLRLWDLATGESTRRFVGHTK-DVLSVAFSTDNRQIVSGSRDKTI 129 (315)
T ss_pred ceeeeeec-cceEecceEEccCCceEEecc--ccceEEEEEecCCcEEEEEEecCC-ceEEEEecCCCceeecCCCccee
Confidence 35555553 578999999999999988888 788999999999976555433322 12345553 45666777789999
Q ss_pred EEEeCCCCcEEEEEecCCCCeeE----EeeCC-CEEEEECC-CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-C
Q 023864 173 FIYDQNNLNKLEEFTHQMKDGWG----LATDG-KVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-K 245 (276)
Q Consensus 173 ~V~D~~tlk~i~~~~~~~~EGWG----LT~Dg-~~L~vSDG-S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-d 245 (276)
-+||...--+...-. .+.-+|- +.|.. .-.++|-| +..|-++|.+++++.....-. -+++|-+++. |
T Consensus 130 klwnt~g~ck~t~~~-~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh-----~~~v~t~~vSpD 203 (315)
T KOG0279|consen 130 KLWNTLGVCKYTIHE-DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGH-----SGYVNTVTVSPD 203 (315)
T ss_pred eeeeecccEEEEEec-CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccc-----cccEEEEEECCC
Confidence 999865544432222 1124565 44665 45666776 778999999999875432211 1244444433 4
Q ss_pred CEEEEEeCCCCCeEEEEeCCCC
Q 023864 246 GEVWANVWQVWPCIPYAYLQAF 267 (276)
Q Consensus 246 G~lyANvw~s~d~I~vIDp~T~ 267 (276)
|.+.|.=..+ ..+..-|.+.+
T Consensus 204 GslcasGgkd-g~~~LwdL~~~ 224 (315)
T KOG0279|consen 204 GSLCASGGKD-GEAMLWDLNEG 224 (315)
T ss_pred CCEEecCCCC-ceEEEEEccCC
Confidence 4444443333 44444454443
No 119
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.51 E-value=0.15 Score=53.74 Aligned_cols=107 Identities=14% Similarity=0.162 Sum_probs=83.5
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCCEEEEEeCCCCcE
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNK 182 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~tlk~ 182 (276)
..=+.+|.++.|..+.. +| +..+|..|+.+|++-++++.-+ +.-+..+. ||+..++-.++|.+-+||.++-..
T Consensus 373 R~dVRsl~vS~d~~~~~-Sg--a~~SikiWn~~t~kciRTi~~~---y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l 446 (888)
T KOG0306|consen 373 RSDVRSLCVSSDSILLA-SG--AGESIKIWNRDTLKCIRTITCG---YILASKFVPGDRYIVLGTKNGELQVFDLASASL 446 (888)
T ss_pred hhheeEEEeecCceeee-ec--CCCcEEEEEccCcceeEEeccc---cEEEEEecCCCceEEEeccCCceEEEEeehhhh
Confidence 34457999997665554 44 4578999999999999987655 45555554 688888999999999999999999
Q ss_pred EEEEecCCCCeeE--EeeCCCEEEEECCCceEEEEc
Q 023864 183 LEEFTHQMKDGWG--LATDGKVLFGSDGSSMLYQID 216 (276)
Q Consensus 183 i~~~~~~~~EGWG--LT~Dg~~L~vSDGS~~L~viD 216 (276)
+.+++.--++=|- ++||++.++..-++.+|-|+|
T Consensus 447 ~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWd 482 (888)
T KOG0306|consen 447 VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWD 482 (888)
T ss_pred hhhhhccccceeeeeecCCCCceEEecCCcEEEEEe
Confidence 9988732245566 678999888877889999998
No 120
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=96.47 E-value=0.17 Score=52.49 Aligned_cols=127 Identities=13% Similarity=0.078 Sum_probs=84.1
Q ss_pred EecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEee-cCCCceEEEEEEeCCEEEEEEeeCCEEEEEeC
Q 023864 99 FPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ-MEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQ 177 (276)
Q Consensus 99 ~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~-l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~ 177 (276)
++.+...-++||+|.+.++|| |.| .+.+|..||+.+++.+..+. .+...+...+...++.+ .+--.++.++.++.
T Consensus 64 i~g~~drsIE~L~W~e~~RLF-S~g--~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l-~IgcddGvl~~~s~ 139 (691)
T KOG2048|consen 64 IHGPEDRSIESLAWAEGGRLF-SSG--LSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTIL-AIGCDDGVLYDFSI 139 (691)
T ss_pred EecCCCCceeeEEEccCCeEE-eec--CCceEEEEecccCceeEEecCCCcceeEEEeCCccceE-EeecCCceEEEEec
Confidence 344567778999999778999 566 67889999999999877663 44456655555444443 33345667777777
Q ss_pred CCCcEEEEEecCCCCeeEEe----eCCCEEEEECCCceEEEEcCCCCcEEEEEEee
Q 023864 178 NNLNKLEEFTHQMKDGWGLA----TDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVR 229 (276)
Q Consensus 178 ~tlk~i~~~~~~~~EGWGLT----~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~ 229 (276)
.+.+..-.......+|=-|+ ++|..++..--+..|.++|..+.+....+..+
T Consensus 140 ~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~ 195 (691)
T KOG2048|consen 140 GPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQ 195 (691)
T ss_pred CCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeec
Confidence 77766655444322354543 45555665333446899999988887755544
No 121
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=96.44 E-value=0.23 Score=46.28 Aligned_cols=99 Identities=15% Similarity=0.175 Sum_probs=61.2
Q ss_pred EEEEecCCEEEEEcCCCC---CCeEEEEeCCCCcEEEEeecCC-CceEEEEEEeCCEEEEEEeeC----CEEEEEeCCCC
Q 023864 109 GLLYAENDTLFESTGLYG---RSSVRRVALETGKVEAINQMEG-SYFGEGLTLLGEKLFQVTWLQ----KTGFIYDQNNL 180 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg---~S~I~~iDl~tgkv~~~~~l~~-~~FgEGit~~g~~LyqlTwk~----~~v~V~D~~tl 180 (276)
+.... +++||+..|..+ .+.+.+||+.+.+-....+++. ...+-.++..+++||++-=.+ ..+.+||+.+.
T Consensus 118 ~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 118 SACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 44555 589999877432 3679999999987655445653 334445677899999985332 34689998875
Q ss_pred cE--EEEEe---cC--CCCeeEEeeCCCEEEEECC
Q 023864 181 NK--LEEFT---HQ--MKDGWGLATDGKVLFGSDG 208 (276)
Q Consensus 181 k~--i~~~~---~~--~~EGWGLT~Dg~~L~vSDG 208 (276)
+- +...+ .+ ....-+++..+..||+-=|
T Consensus 197 ~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG 231 (323)
T TIGR03548 197 QWQKVADPTTDSEPISLLGAASIKINESLLLCIGG 231 (323)
T ss_pred eeEECCCCCCCCCceeccceeEEEECCCEEEEECC
Confidence 53 33221 11 0123345666677777544
No 122
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=96.43 E-value=0.0091 Score=59.65 Aligned_cols=162 Identities=13% Similarity=0.075 Sum_probs=109.2
Q ss_pred eEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEE
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTG 172 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v 172 (276)
.+.|.+|-+- ..=+.-+.|+++|+=|.|+| -+-.|..||.+||+++.+..++.-++..-.-.+|..+|.+--.++++
T Consensus 248 ~~~lrtf~gH-~k~Vrd~~~s~~g~~fLS~s--fD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki 324 (503)
T KOG0282|consen 248 RRCLRTFKGH-RKPVRDASFNNCGTSFLSAS--FDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKI 324 (503)
T ss_pred cceehhhhcc-hhhhhhhhccccCCeeeeee--cceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcE
Confidence 5667777652 33336778898898888888 67789999999999999999999888887778888999999999999
Q ss_pred EEEeCCCCcEEEEEecCCCCee---EEeeCCCEEEEECCCceEEEEcCCCCcEEEEEE-eeeCCEeeeeeeeeEEECCEE
Q 023864 173 FIYDQNNLNKLEEFTHQMKDGW---GLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDI-VRYKGREVRNLNELEFIKGEV 248 (276)
Q Consensus 173 ~V~D~~tlk~i~~~~~~~~EGW---GLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~-V~~~g~pv~~lNELE~idG~l 248 (276)
..||..+.+++.++.... .+| -+-++|++.+-|--...+.+++-...-.++.|. +.....|. ++ ..-+|..
T Consensus 325 ~~wDiRs~kvvqeYd~hL-g~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~--~~--~~P~~~~ 399 (503)
T KOG0282|consen 325 RQWDIRSGKVVQEYDRHL-GAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPC--LT--LHPNGKW 399 (503)
T ss_pred EEEeccchHHHHHHHhhh-hheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcc--ee--cCCCCCe
Confidence 999999999988876431 122 233567776664444567777755443333321 11111111 10 0225556
Q ss_pred EEEeCCCCCeEEEEe
Q 023864 249 WANVWQVWPCIPYAY 263 (276)
Q Consensus 249 yANvw~s~d~I~vID 263 (276)
++.--+. |+|++..
T Consensus 400 ~~aQs~d-N~i~ifs 413 (503)
T KOG0282|consen 400 FAAQSMD-NYIAIFS 413 (503)
T ss_pred ehhhccC-ceEEEEe
Confidence 6655566 6666544
No 123
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.42 E-value=0.066 Score=56.84 Aligned_cols=113 Identities=12% Similarity=-0.014 Sum_probs=74.8
Q ss_pred EeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCCC----------eeEE----------------eeCCCEEEEECCCc
Q 023864 157 LLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKD----------GWGL----------------ATDGKVLFGSDGSS 210 (276)
Q Consensus 157 ~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~E----------GWGL----------------T~Dg~~L~vSDGS~ 210 (276)
+.|++||+.|. .+.++.+|++|.|++-++....+. |.++ +..++++|+...+.
T Consensus 192 vvgg~lYv~t~-~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg 270 (764)
T TIGR03074 192 KVGDTLYLCTP-HNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDA 270 (764)
T ss_pred EECCEEEEECC-CCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCC
Confidence 46899999997 468999999999999998754211 1111 11345888877788
Q ss_pred eEEEEcCCCCcEEEEEEe------ee--CCEe---eeeeeeeEEECCEEEEEeCCC--------CCeEEEEeCCCCcEE
Q 023864 211 MLYQIDPQTLKVIRKDIV------RY--KGRE---VRNLNELEFIKGEVWANVWQV--------WPCIPYAYLQAFGSS 270 (276)
Q Consensus 211 ~L~viDp~t~~vi~~I~V------~~--~g~p---v~~lNELE~idG~lyANvw~s--------~d~I~vIDp~T~~v~ 270 (276)
+|+-+|++|+++.-+... .. ...+ +....--.+++|.|++..+.. ...|..+|.+||+..
T Consensus 271 ~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 271 RLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred eEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 999999999999854321 10 0000 000000125588999876533 156999999998865
No 124
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.40 E-value=0.04 Score=52.66 Aligned_cols=150 Identities=19% Similarity=0.266 Sum_probs=96.9
Q ss_pred EEEEEEecCCCCCceEEEEecC-CE-EEEEcCCCCCCeEEEEeCCCCcEEEEee--cCCCceEEEEEEeCCEEEEEEeeC
Q 023864 94 QVVNEFPHDPRAFTQGLLYAEN-DT-LFESTGLYGRSSVRRVALETGKVEAINQ--MEGSYFGEGLTLLGEKLFQVTWLQ 169 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~d-g~-LyeStG~yg~S~I~~iDl~tgkv~~~~~--l~~~~FgEGit~~g~~LyqlTwk~ 169 (276)
|++..... .+.-.|++++|- .+ +... +.=.-.-.++|+.+++...... -+.++||-|+=-.++++.-+|..+
T Consensus 59 k~v~~~~l--paR~Hgi~~~p~~~ravafA--RrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEnd 134 (366)
T COG3490 59 KIVFATAL--PARGHGIAFHPALPRAVAFA--RRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATEND 134 (366)
T ss_pred ceeeeeec--ccccCCeecCCCCcceEEEE--ecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCC
Confidence 45555544 233348888775 22 3321 2223455678998887655543 345899999877666666666644
Q ss_pred -----CEEEEEeC-CCCcEEEEEecCCCCeeE-----EeeCCCEEEEECC---Cc---------------eEEEEcCCCC
Q 023864 170 -----KTGFIYDQ-NNLNKLEEFTHQMKDGWG-----LATDGKVLFGSDG---SS---------------MLYQIDPQTL 220 (276)
Q Consensus 170 -----~~v~V~D~-~tlk~i~~~~~~~~EGWG-----LT~Dg~~L~vSDG---S~---------------~L~viDp~t~ 220 (276)
+.+=|||. +-++.+++|+. .|.| |..||..|.+.|| +. .|..+|..|+
T Consensus 135 fd~~rGViGvYd~r~~fqrvgE~~t---~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG 211 (366)
T COG3490 135 FDPNRGVIGVYDAREGFQRVGEFST---HGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATG 211 (366)
T ss_pred CCCCCceEEEEecccccceeccccc---CCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEecccc
Confidence 56677996 46778888873 4444 7789999999997 33 6788899999
Q ss_pred cEEEEEEee--eCCEeeeeeeeeEEE-CCEEEEEeC
Q 023864 221 KVIRKDIVR--YKGREVRNLNELEFI-KGEVWANVW 253 (276)
Q Consensus 221 ~vi~~I~V~--~~g~pv~~lNELE~i-dG~lyANvw 253 (276)
+++.++..- ..-..+.++ ... ||.||..|=
T Consensus 212 ~liekh~Lp~~l~~lSiRHl---d~g~dgtvwfgcQ 244 (366)
T COG3490 212 NLIEKHTLPASLRQLSIRHL---DIGRDGTVWFGCQ 244 (366)
T ss_pred chhhhccCchhhhhcceeee---eeCCCCcEEEEEE
Confidence 988877765 222233333 122 678887773
No 125
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.37 E-value=0.34 Score=46.81 Aligned_cols=126 Identities=14% Similarity=0.160 Sum_probs=91.0
Q ss_pred eeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEee
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWL 168 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk 168 (276)
.+.+.+.++..-..+ +-+|.++|.|+|=.|.| |+-.++.||+-+|+.-...+|... ++-+-+. |++.++.-
T Consensus 115 ~~W~~~~slK~H~~~-Vt~lsiHPS~KLALsVg--~D~~lr~WNLV~Gr~a~v~~L~~~--at~v~w~~~Gd~F~v~~-- 187 (362)
T KOG0294|consen 115 GSWELLKSLKAHKGQ-VTDLSIHPSGKLALSVG--GDQVLRTWNLVRGRVAFVLNLKNK--ATLVSWSPQGDHFVVSG-- 187 (362)
T ss_pred CCeEEeeeecccccc-cceeEecCCCceEEEEc--CCceeeeehhhcCccceeeccCCc--ceeeEEcCCCCEEEEEe--
Confidence 355788888432455 79999999999998988 999999999999998777677654 4445554 46666655
Q ss_pred CCEEEEEeCCCCcEEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEE
Q 023864 169 QKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVI 223 (276)
Q Consensus 169 ~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi 223 (276)
.+++-+|-.++-++.+++..+...-....-++..|++.--...|.+.|..+....
T Consensus 188 ~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~ 242 (362)
T KOG0294|consen 188 RNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPL 242 (362)
T ss_pred ccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccc
Confidence 6788888888888888877662233333446778887544578889998875443
No 126
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.36 E-value=0.81 Score=43.79 Aligned_cols=160 Identities=18% Similarity=0.110 Sum_probs=97.2
Q ss_pred ceEEEEecCCE-EEEEcCCCCC-CeEEEEeCCCC-----cEEEEe-ecCCCceEEEEEEeCCEEEEEEee---CCEEEEE
Q 023864 107 TQGLLYAENDT-LFESTGLYGR-SSVRRVALETG-----KVEAIN-QMEGSYFGEGLTLLGEKLFQVTWL---QKTGFIY 175 (276)
Q Consensus 107 TQGL~~~~dg~-LyeStG~yg~-S~I~~iDl~tg-----kv~~~~-~l~~~~FgEGit~~g~~LyqlTwk---~~~v~V~ 175 (276)
.-++..++|++ |+...+.-.. +.|..+|+.++ +...-. ..+... -.+...++++|++|.+ .++++.+
T Consensus 229 ~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~--~~v~~~~~~~yi~Tn~~a~~~~l~~~ 306 (414)
T PF02897_consen 229 FVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE--YYVDHHGDRLYILTNDDAPNGRLVAV 306 (414)
T ss_dssp EEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E--EEEEEETTEEEEEE-TT-TT-EEEEE
T ss_pred EEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE--EEEEccCCEEEEeeCCCCCCcEEEEe
Confidence 46788888875 5544443344 89999999986 332222 233322 1244459999999964 4789999
Q ss_pred eCCCCcE---EEEEecCCCCee---EEeeCCCEEEE---ECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECC
Q 023864 176 DQNNLNK---LEEFTHQMKDGW---GLATDGKVLFG---SDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG 246 (276)
Q Consensus 176 D~~tlk~---i~~~~~~~~EGW---GLT~Dg~~L~v---SDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG 246 (276)
|.++... ...+.-+ .++. ++...+++|++ .||..+|.++|+...+....+.....|. +..+| .++...
T Consensus 307 ~l~~~~~~~~~~~l~~~-~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~-v~~~~-~~~~~~ 383 (414)
T PF02897_consen 307 DLADPSPAEWWTVLIPE-DEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGS-VSGVS-GDFDSD 383 (414)
T ss_dssp ETTSTSGGGEEEEEE---SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSE-EEEEE-S-TT-S
T ss_pred cccccccccceeEEcCC-CCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceE-EeccC-CCCCCC
Confidence 9988873 2233221 2321 23445777766 4589999999999666777777765453 22222 123344
Q ss_pred EE--EEEeCCCCCeEEEEeCCCCcEEE
Q 023864 247 EV--WANVWQVWPCIPYAYLQAFGSSL 271 (276)
Q Consensus 247 ~l--yANvw~s~d~I~vIDp~T~~v~l 271 (276)
.+ ..+-|.+-..|...|++|++..+
T Consensus 384 ~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 384 ELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp EEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred EEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 44 47777775689999999998765
No 127
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.35 E-value=0.18 Score=47.70 Aligned_cols=113 Identities=13% Similarity=0.146 Sum_probs=75.6
Q ss_pred EEEEEE-eCCEEEEEEeeC------CEEEEEeCCCCcEEEEEecC-----------------CCCeeEEeeCCCEEEEEC
Q 023864 152 GEGLTL-LGEKLFQVTWLQ------KTGFIYDQNNLNKLEEFTHQ-----------------MKDGWGLATDGKVLFGSD 207 (276)
Q Consensus 152 gEGit~-~g~~LyqlTwk~------~~v~V~D~~tlk~i~~~~~~-----------------~~EGWGLT~Dg~~L~vSD 207 (276)
.|||++ .++.+|+..... ..+..||++ .+.+.+++.| .-||.++++||+.||+.-
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 799999 679999999999 999999987 7777766422 237888999999888743
Q ss_pred -CC---------------ceEEEEcCCC-CcEEEEEEeeeCC----EeeeeeeeeEEEC-CEEEEE-------eCCCCCe
Q 023864 208 -GS---------------SMLYQIDPQT-LKVIRKDIVRYKG----REVRNLNELEFIK-GEVWAN-------VWQVWPC 258 (276)
Q Consensus 208 -GS---------------~~L~viDp~t-~~vi~~I~V~~~g----~pv~~lNELE~id-G~lyAN-------vw~s~d~ 258 (276)
+. -+|+.+|+.+ .+..+......+. .....+-|+.+.+ |++++= .-.. -.
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~-~r 244 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNY-KR 244 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccce-EE
Confidence 21 3688889887 4444444443321 0233566777664 445431 1223 57
Q ss_pred EEEEeCCC
Q 023864 259 IPYAYLQA 266 (276)
Q Consensus 259 I~vIDp~T 266 (276)
|..||...
T Consensus 245 i~~v~l~~ 252 (326)
T PF13449_consen 245 IYRVDLSD 252 (326)
T ss_pred EEEEEccc
Confidence 88888654
No 128
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.32 E-value=0.56 Score=44.94 Aligned_cols=157 Identities=16% Similarity=0.185 Sum_probs=93.4
Q ss_pred CCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEE-eeCCEEEE--EeCCCC
Q 023864 105 AFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVT-WLQKTGFI--YDQNNL 180 (276)
Q Consensus 105 aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlT-wk~~~v~V--~D~~tl 180 (276)
.=+.+|+|+|+ .+||..++ ....|..++. +|+++++++|+.--=+|+|+..++-.|+++ .+.+.+++ +|++|.
T Consensus 86 ~nvS~LTynp~~rtLFav~n--~p~~iVElt~-~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTN--KPAAIVELTK-EGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred ccccceeeCCCcceEEEecC--CCceEEEEec-CCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 33789999998 46887766 7788888887 599999999986334799999986666655 56677666 455533
Q ss_pred c-EEE--EEecC-------CCCeeEEeeCCCEEEEECCCc--eEEEEc--CCCCcEEEE-EEeeeCCEeeeeeeeeEEE-
Q 023864 181 N-KLE--EFTHQ-------MKDGWGLATDGKVLFGSDGSS--MLYQID--PQTLKVIRK-DIVRYKGREVRNLNELEFI- 244 (276)
Q Consensus 181 k-~i~--~~~~~-------~~EGWGLT~Dg~~L~vSDGS~--~L~viD--p~t~~vi~~-I~V~~~g~pv~~lNELE~i- 244 (276)
. .++ .++.+ .=||.+-.+.++.||++=--+ .|+.++ |..+.+-.. ....+..--+..+--|||.
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~ 242 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA 242 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence 2 112 33322 237777777788888876433 444443 222211100 0111111223344445555
Q ss_pred -CCEEEEEeCCCCCeEEEEeCC
Q 023864 245 -KGEVWANVWQVWPCIPYAYLQ 265 (276)
Q Consensus 245 -dG~lyANvw~s~d~I~vIDp~ 265 (276)
+|.++|=--.+ -.++.+|..
T Consensus 243 ~~~~LLVLS~ES-r~l~Evd~~ 263 (316)
T COG3204 243 ITNSLLVLSDES-RRLLEVDLS 263 (316)
T ss_pred CCCcEEEEecCC-ceEEEEecC
Confidence 55666655555 666666654
No 129
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=96.24 E-value=0.18 Score=47.68 Aligned_cols=151 Identities=14% Similarity=0.102 Sum_probs=102.6
Q ss_pred EEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCCcEEEEEe
Q 023864 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLEEFT 187 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tlk~i~~~~ 187 (276)
-..++|+|.-+.-.+ .++.|..+|..+.++....++. .|---++..+ +.+|.||...|.+-|..-..||++.++.
T Consensus 111 ~i~wsp~g~~~~~~~--kdD~it~id~r~~~~~~~~~~~--~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~ 186 (313)
T KOG1407|consen 111 NITWSPDGEYIAVGN--KDDRITFIDARTYKIVNEEQFK--FEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIK 186 (313)
T ss_pred EEEEcCCCCEEEEec--CcccEEEEEecccceeehhccc--ceeeeeeecCCCCEEEEecCCceEEEEeccccccccccc
Confidence 356788876443334 7899999999999887765443 4444566654 7999999999999999999999999996
Q ss_pred cCCCCee--EEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEE-ECCEEEEEeCCCCCeEEEEeC
Q 023864 188 HQMKDGW--GLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF-IKGEVWANVWQVWPCIPYAYL 264 (276)
Q Consensus 188 ~~~~EGW--GLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~-idG~lyANvw~s~d~I~vIDp 264 (276)
--..+.+ .+.|||+++-+.-.++.+..+|++.+--++.|.=-+. ||.-+ -+ .||+..|.--.+ -.|=+-+.
T Consensus 187 AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw--pVRTl---SFS~dg~~lASaSED-h~IDIA~v 260 (313)
T KOG1407|consen 187 AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW--PVRTL---SFSHDGRMLASASED-HFIDIAEV 260 (313)
T ss_pred cCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC--ceEEE---EeccCcceeeccCcc-ceEEeEec
Confidence 3212333 3789999998866678899999998765555543332 22221 12 256655555333 45555566
Q ss_pred CCCcE
Q 023864 265 QAFGS 269 (276)
Q Consensus 265 ~T~~v 269 (276)
+||..
T Consensus 261 etGd~ 265 (313)
T KOG1407|consen 261 ETGDR 265 (313)
T ss_pred ccCCe
Confidence 66554
No 130
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.14 E-value=0.061 Score=53.60 Aligned_cols=108 Identities=13% Similarity=0.120 Sum_probs=75.4
Q ss_pred eEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCE-EEEEeCCCCcEEEEE
Q 023864 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKT-GFIYDQNNLNKLEEF 186 (276)
Q Consensus 108 QGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~-v~V~D~~tlk~i~~~ 186 (276)
--++|+|||.||- ||. -++.|.+||+..+....+.+--..+. -.|.+..+-.|.+|--++. |+.||...++..++|
T Consensus 351 ts~~fHpDgLifg-tgt-~d~~vkiwdlks~~~~a~Fpght~~v-k~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 351 TSAAFHPDGLIFG-TGT-PDGVVKIWDLKSQTNVAKFPGHTGPV-KAISFSENGYWLATAADDGSVKLWDLRKLKNFKTI 427 (506)
T ss_pred EEeeEcCCceEEe-ccC-CCceEEEEEcCCccccccCCCCCCce-eEEEeccCceEEEEEecCCeEEEEEehhhccccee
Confidence 3568899998884 775 78899999999987555433323333 2466666777888777666 999999999999999
Q ss_pred ecCCCCeeE---Ee--eCCCEEEEECCCceEEEEcCCCC
Q 023864 187 THQMKDGWG---LA--TDGKVLFGSDGSSMLYQIDPQTL 220 (276)
Q Consensus 187 ~~~~~EGWG---LT--~Dg~~L~vSDGS~~L~viDp~t~ 220 (276)
+.+ |+.+ ++ .-|++|.++-.+=+||..+-.+-
T Consensus 428 ~l~--~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k 464 (506)
T KOG0289|consen 428 QLD--EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTK 464 (506)
T ss_pred ecc--ccccceeEEEcCCCCeEEeecceeEEEEEecccc
Confidence 876 4433 33 44778877722346777775543
No 131
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=96.08 E-value=0.43 Score=46.76 Aligned_cols=129 Identities=12% Similarity=0.099 Sum_probs=90.0
Q ss_pred EEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe----CCEEEEEEeeCC
Q 023864 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL----GEKLFQVTWLQK 170 (276)
Q Consensus 95 Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~----g~~LyqlTwk~~ 170 (276)
..-+.+--...- --+.|+-||+|+.+.+ =...|.+++..+|....++. +=+++|.+. ..+++.+--.++
T Consensus 98 ~~~eltgHKDSV-t~~~FshdgtlLATGd--msG~v~v~~~stg~~~~~~~----~e~~dieWl~WHp~a~illAG~~DG 170 (399)
T KOG0296|consen 98 FAGELTGHKDSV-TCCSFSHDGTLLATGD--MSGKVLVFKVSTGGEQWKLD----QEVEDIEWLKWHPRAHILLAGSTDG 170 (399)
T ss_pred ceeEecCCCCce-EEEEEccCceEEEecC--CCccEEEEEcccCceEEEee----cccCceEEEEecccccEEEeecCCC
Confidence 444444224444 3466666889888666 36678888999998766653 113445543 267777778899
Q ss_pred EEEEEeCCCCcEEEEEecC-CCCeeE-EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeee
Q 023864 171 TGFIYDQNNLNKLEEFTHQ-MKDGWG-LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 171 ~v~V~D~~tlk~i~~~~~~-~~EGWG-LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~ 230 (276)
.++.|...+....+.++=. .+--.| +.||||++..-.-+..|.++||+|++.+.++.-.+
T Consensus 171 svWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e 232 (399)
T KOG0296|consen 171 SVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE 232 (399)
T ss_pred cEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccc
Confidence 9999998887777777522 122234 89999999887668899999999999988877544
No 132
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.02 E-value=0.11 Score=51.52 Aligned_cols=131 Identities=23% Similarity=0.242 Sum_probs=85.7
Q ss_pred CC-CeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC--EEEEEeCCCCcEEEEEecCCCCee----EEee
Q 023864 126 GR-SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLNKLEEFTHQMKDGW----GLAT 198 (276)
Q Consensus 126 g~-S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~--~v~V~D~~tlk~i~~~~~~~~EGW----GLT~ 198 (276)
+. +.+.++|+++|+-......+..-+.-....+|.+|....-+++ .++++|..+....+ +.. .+|+ .++|
T Consensus 215 ~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~--~~gi~~~Ps~sp 291 (425)
T COG0823 215 GGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTN--GFGINTSPSWSP 291 (425)
T ss_pred CCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-ccc--CCccccCccCCC
Confidence 44 7899999999987666666665555566777788877777665 57888988777333 432 2333 3789
Q ss_pred CCCEE-EEEC--CCceEEEEcCCCCcEEEEEEeeeCC--EeeeeeeeeEEECCE--EEEEeCCCCC--eEEEEeCCCCc
Q 023864 199 DGKVL-FGSD--GSSMLYQIDPQTLKVIRKDIVRYKG--REVRNLNELEFIKGE--VWANVWQVWP--CIPYAYLQAFG 268 (276)
Q Consensus 199 Dg~~L-~vSD--GS~~L~viDp~t~~vi~~I~V~~~g--~pv~~lNELE~idG~--lyANvw~s~d--~I~vIDp~T~~ 268 (276)
||+++ |+|| |..+|+.+|++..++ .++.-...+ .|.. -.||. ++.+. .. + .|.+-|++++.
T Consensus 292 dG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~------SpdG~~i~~~~~-~~-g~~~i~~~~~~~~~ 361 (425)
T COG0823 292 DGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVW------SPDGDKIVFESS-SG-GQWDIDKNDLASGG 361 (425)
T ss_pred CCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccC------CCCCCEEEEEec-cC-CceeeEEeccCCCC
Confidence 99876 7799 788999999998877 344333222 2322 23554 45551 22 3 36666776655
No 133
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=95.98 E-value=0.083 Score=49.75 Aligned_cols=139 Identities=17% Similarity=0.156 Sum_probs=97.7
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCC
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQK 170 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~ 170 (276)
+-++|+++-.... +.-|++++||+++.. . ..++|..||..+-++++..++|-+.= ...+. +..+|++--.+.
T Consensus 174 Tgt~v~sL~~~s~--VtSlEvs~dG~ilTi-a--~gssV~Fwdaksf~~lKs~k~P~nV~--SASL~P~k~~fVaGged~ 246 (334)
T KOG0278|consen 174 TGTEVQSLEFNSP--VTSLEVSQDGRILTI-A--YGSSVKFWDAKSFGLLKSYKMPCNVE--SASLHPKKEFFVAGGEDF 246 (334)
T ss_pred cCcEEEEEecCCC--CcceeeccCCCEEEE-e--cCceeEEeccccccceeeccCccccc--cccccCCCceEEecCcce
Confidence 5567887754222 347899999986642 2 33789999999999999999997743 33444 358999999999
Q ss_pred EEEEEeCCCCcEEEEEecC--CC-CeeEEeeCCCEEEE--E-CCCceEEEEcCCCCc-EEEEEEeeeCCEeeeee
Q 023864 171 TGFIYDQNNLNKLEEFTHQ--MK-DGWGLATDGKVLFG--S-DGSSMLYQIDPQTLK-VIRKDIVRYKGREVRNL 238 (276)
Q Consensus 171 ~v~V~D~~tlk~i~~~~~~--~~-EGWGLT~Dg~~L~v--S-DGS~~L~viDp~t~~-vi~~I~V~~~g~pv~~l 238 (276)
.++.||-+|.+.++.+.-+ .| ...-++|||. +|. | ||+=+|++..|..-. +.+...+.++|..+..+
T Consensus 247 ~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~~~~~~~~~~~~~ed~~eev~s~ 320 (334)
T KOG0278|consen 247 KVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQTTPGKTYGLWKCVKPEDDGEEVASP 320 (334)
T ss_pred EEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCCceEEEEEecCCCchhhccccChhhhccccccc
Confidence 9999999999999997322 11 2334778875 444 3 378888888876644 55666666655544433
No 134
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=95.95 E-value=0.22 Score=49.18 Aligned_cols=116 Identities=11% Similarity=0.036 Sum_probs=79.3
Q ss_pred eEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCCcEEEEE
Q 023864 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (276)
Q Consensus 108 QGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tlk~i~~~ 186 (276)
--+.|+|+|.-+++.+ |+..+|.||+.|.....+.+ +..-+-.-+++.. ++...---++|.+.+||+++.+++++-
T Consensus 119 l~~~fsp~g~~l~tGs--GD~TvR~WD~~TeTp~~t~K-gH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~ 195 (480)
T KOG0271|consen 119 LSVQFSPTGSRLVTGS--GDTTVRLWDLDTETPLFTCK-GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRA 195 (480)
T ss_pred EEEEecCCCceEEecC--CCceEEeeccCCCCcceeec-CCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccccc
Confidence 4678999988777666 99999999999987665544 2233444555543 455556668999999999999988753
Q ss_pred ecCCC--------CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEE
Q 023864 187 THQMK--------DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKD 226 (276)
Q Consensus 187 ~~~~~--------EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I 226 (276)
--+.. |..-+.++...|--+-.++.+.++|..-.+.+..+
T Consensus 196 l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l 243 (480)
T KOG0271|consen 196 LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL 243 (480)
T ss_pred ccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe
Confidence 21111 22235556665544557899999998877666544
No 135
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=95.92 E-value=0.2 Score=43.96 Aligned_cols=96 Identities=15% Similarity=0.127 Sum_probs=66.2
Q ss_pred ceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEee--CCEEEEEeCCCCc
Q 023864 107 TQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWL--QKTGFIYDQNNLN 181 (276)
Q Consensus 107 TQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk--~~~v~V~D~~tlk 181 (276)
..-+.++|+|. +....|. -...|..||.+ ++.+.. ++.... -.+... |..|...... ++.+.+||.++.+
T Consensus 62 I~~~~WsP~g~~favi~g~-~~~~v~lyd~~-~~~i~~--~~~~~~-n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~ 136 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGS-MPAKVTLYDVK-GKKIFS--FGTQPR-NTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK 136 (194)
T ss_pred eEEEEECcCCCEEEEEEcc-CCcccEEEcCc-ccEeEe--ecCCCc-eEEEECCCCCEEEEEEccCCCcEEEEEECCCCE
Confidence 68999999874 6666774 34599999997 555444 343322 234543 3444444433 4679999999999
Q ss_pred EEEEEecCCCCeeEEeeCCCEEEEEC
Q 023864 182 KLEEFTHQMKDGWGLATDGKVLFGSD 207 (276)
Q Consensus 182 ~i~~~~~~~~EGWGLT~Dg~~L~vSD 207 (276)
.+.++..+..-...-+|||++|..+.
T Consensus 137 ~i~~~~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 137 KISTFEHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred EeeccccCcEEEEEEcCCCCEEEEEE
Confidence 99998876445556789999998865
No 136
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=95.92 E-value=0.39 Score=45.03 Aligned_cols=154 Identities=19% Similarity=0.272 Sum_probs=90.7
Q ss_pred eeEEEEEEecC-----CCCCceEEEEecC------CEEEEEcCCCCCCeEEEEeCCCCcEEEEe----------------
Q 023864 92 TIQVVNEFPHD-----PRAFTQGLLYAEN------DTLFESTGLYGRSSVRRVALETGKVEAIN---------------- 144 (276)
Q Consensus 92 t~~Vv~~~Phd-----~~aFTQGL~~~~d------g~LyeStG~yg~S~I~~iDl~tgkv~~~~---------------- 144 (276)
+-+++++|+.+ +..|.+-|.++.. +..|.+.- +...|.+||+++|+.-+..
T Consensus 43 t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~--~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~ 120 (287)
T PF03022_consen 43 TNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDS--GGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIG 120 (287)
T ss_dssp TTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEET--TTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEET
T ss_pred CCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCC--CcCcEEEEEccCCcEEEEecCCcceeccccceecc
Confidence 34688888765 4678888999862 47898765 6679999999999764432
Q ss_pred ----ecCCCceEEEEEEe-----CCEEEEEEeeCCEEEEEeCCCC---------------cEEEEEecCCCCeeEEeeCC
Q 023864 145 ----QMEGSYFGEGLTLL-----GEKLFQVTWLQKTGFIYDQNNL---------------NKLEEFTHQMKDGWGLATDG 200 (276)
Q Consensus 145 ----~l~~~~FgEGit~~-----g~~LyqlTwk~~~v~V~D~~tl---------------k~i~~~~~~~~EGWGLT~Dg 200 (276)
..+.+.| |+++. +..||--.--+.+.|.+..+-| +.+++-..+ ..|-.+.+ .
T Consensus 121 g~~~~~~dg~~--gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~-s~g~~~D~-~ 196 (287)
T PF03022_consen 121 GESFQWPDGIF--GIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQ-SDGMAIDP-N 196 (287)
T ss_dssp TEEEEETTSEE--EEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---S-ECEEEEET-T
T ss_pred CceEecCCCcc--ccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCC-CceEEECC-C
Confidence 1112334 44442 2467777767777777765422 222222111 23333443 5
Q ss_pred CEEEEEC-CCceEEEEcCCC-CcEEE-EEEeeeCCEeeeeeeeeEEEC---CEEEEEe
Q 023864 201 KVLFGSD-GSSMLYQIDPQT-LKVIR-KDIVRYKGREVRNLNELEFIK---GEVWANV 252 (276)
Q Consensus 201 ~~L~vSD-GS~~L~viDp~t-~~vi~-~I~V~~~g~pv~~lNELE~id---G~lyANv 252 (276)
..||.+| ..+.|..+|+.+ ++... .+- -.+.+-+..++.|-+.+ |+||+..
T Consensus 197 G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l-~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 197 GNLYFTDVEQNAIGCWDPDGPYTPENFEIL-AQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp TEEEEEECCCTEEEEEETTTSB-GCCEEEE-EE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CcEEEecCCCCeEEEEeCCCCcCccchhee-EEcCceeeccceeeeccccCceEEEEE
Confidence 6899999 899999999987 21111 222 23344466778888888 8999765
No 137
>PRK01029 tolB translocation protein TolB; Provisional
Probab=95.89 E-value=0.24 Score=48.65 Aligned_cols=115 Identities=17% Similarity=0.140 Sum_probs=69.4
Q ss_pred EEEEecCCE-EEEEcCCCCCCeEEEEeCCC-CcEEEEeecC-CCceEEEEEEeCCEEEEEEeeC--CEEEEEeCCCCcEE
Q 023864 109 GLLYAENDT-LFESTGLYGRSSVRRVALET-GKVEAINQME-GSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLNKL 183 (276)
Q Consensus 109 GL~~~~dg~-LyeStG~yg~S~I~~iDl~t-gkv~~~~~l~-~~~FgEGit~~g~~LyqlTwk~--~~v~V~D~~tlk~i 183 (276)
...|+|||+ |+..+..-|...|..++++. +.....+.-. .....-....+|++|+.+.-.+ ..++++|.++.+..
T Consensus 285 ~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~ 364 (428)
T PRK01029 285 NPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY 364 (428)
T ss_pred CeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE
Confidence 568999985 54433333667888888753 2222222222 1222223445677787766543 47899999887653
Q ss_pred EEEecC-CCCeeEEeeCCCEEEE-EC--CCceEEEEcCCCCcEE
Q 023864 184 EEFTHQ-MKDGWGLATDGKVLFG-SD--GSSMLYQIDPQTLKVI 223 (276)
Q Consensus 184 ~~~~~~-~~EGWGLT~Dg~~L~v-SD--GS~~L~viDp~t~~vi 223 (276)
.-...+ ..+.-..++||+.|+. ++ |...|+.+|.++.+..
T Consensus 365 ~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~ 408 (428)
T PRK01029 365 QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR 408 (428)
T ss_pred EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 221111 1244557899998865 33 5789999999887654
No 138
>PLN02193 nitrile-specifier protein
Probab=95.88 E-value=0.83 Score=45.40 Aligned_cols=155 Identities=15% Similarity=0.135 Sum_probs=93.5
Q ss_pred EEEEecCCEEEEEcCCCCC-----CeEEEEeCCCCcEEEEee---cCC-CceEEEEEEeCCEEEEEEee-----CCEEEE
Q 023864 109 GLLYAENDTLFESTGLYGR-----SSVRRVALETGKVEAINQ---MEG-SYFGEGLTLLGEKLFQVTWL-----QKTGFI 174 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~-----S~I~~iDl~tgkv~~~~~---l~~-~~FgEGit~~g~~LyqlTwk-----~~~v~V 174 (276)
+.+.. ++.||.-.|.... +.+.+||+++.+-..... +|. ...+-.++..+++||+.-=. -+.+++
T Consensus 170 ~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~ 248 (470)
T PLN02193 170 GIAQV-GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYS 248 (470)
T ss_pred EEEEE-CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEE
Confidence 45555 4789987775321 458899999886543221 232 23455677789999997532 367999
Q ss_pred EeCCCCcEE--EEE---ecCCCCeeEEeeCCCEEEEECC------CceEEEEcCCCCcEEEEEEeeeCCEee-eeeeeeE
Q 023864 175 YDQNNLNKL--EEF---THQMKDGWGLATDGKVLFGSDG------SSMLYQIDPQTLKVIRKDIVRYKGREV-RNLNELE 242 (276)
Q Consensus 175 ~D~~tlk~i--~~~---~~~~~EGWGLT~Dg~~L~vSDG------S~~L~viDp~t~~vi~~I~V~~~g~pv-~~lNELE 242 (276)
||+.+.+-. ... +.+ ..+-+++..++.||+-=| .+.++.+|+++.+-.. +... ...+. ..--.+.
T Consensus 249 yD~~t~~W~~l~~~~~~P~~-R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~-~~~~~~R~~~~~~ 325 (470)
T PLN02193 249 FDTTTNEWKLLTPVEEGPTP-RSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFH-CSTP-GDSFSIRGGAGLE 325 (470)
T ss_pred EECCCCEEEEcCcCCCCCCC-ccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEe-CCCC-CCCCCCCCCcEEE
Confidence 999876543 222 222 345566666778888654 3468899999876542 2211 00110 0111234
Q ss_pred EECCEEEEEeC----CCCCeEEEEeCCCCc
Q 023864 243 FIKGEVWANVW----QVWPCIPYAYLQAFG 268 (276)
Q Consensus 243 ~idG~lyANvw----~s~d~I~vIDp~T~~ 268 (276)
.++|+||+--. .. +.+.+.||++.+
T Consensus 326 ~~~gkiyviGG~~g~~~-~dv~~yD~~t~~ 354 (470)
T PLN02193 326 VVQGKVWVVYGFNGCEV-DDVHYYDPVQDK 354 (470)
T ss_pred EECCcEEEEECCCCCcc-CceEEEECCCCE
Confidence 66888886432 14 678999998865
No 139
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.88 E-value=0.73 Score=44.11 Aligned_cols=154 Identities=18% Similarity=0.149 Sum_probs=87.3
Q ss_pred EEEEecCCE--EE-EEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCC--EEEEEEeeC----------CEEE
Q 023864 109 GLLYAENDT--LF-ESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGE--KLFQVTWLQ----------KTGF 173 (276)
Q Consensus 109 GL~~~~dg~--Ly-eStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~--~LyqlTwk~----------~~v~ 173 (276)
++.++|||+ +| ++.|.-+...|+++|+++|+.+.. .++...| .++++.++ .+|-..+.+ .+++
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i~~~~~-~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GIENPKF-SSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EEEEEES-EEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-ccccccc-ceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 577888875 33 467733457799999999987654 2332222 23677654 666666544 3478
Q ss_pred EEeCCCCcEEEEEecC---CCC---eeEEeeCCCEEEEE--CC-C-ceEEEEcCCCC----cEEEEEEeeeCCEeeeeee
Q 023864 174 IYDQNNLNKLEEFTHQ---MKD---GWGLATDGKVLFGS--DG-S-SMLYQIDPQTL----KVIRKDIVRYKGREVRNLN 239 (276)
Q Consensus 174 V~D~~tlk~i~~~~~~---~~E---GWGLT~Dg~~L~vS--DG-S-~~L~viDp~t~----~vi~~I~V~~~g~pv~~lN 239 (276)
..+..|-..-...=++ ... +.+.+.||++|+++ .+ + +.|+++|..+. ...+.+.-..++.. .
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~----~ 281 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE----Y 281 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E----E
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE----E
Confidence 8887776543222121 123 45578999998872 34 5 79999999875 33444444433321 2
Q ss_pred eeEEECCEEE-EEeCCCC-CeEEEEeCCCCc
Q 023864 240 ELEFIKGEVW-ANVWQVW-PCIPYAYLQAFG 268 (276)
Q Consensus 240 ELE~idG~ly-ANvw~s~-d~I~vIDp~T~~ 268 (276)
.++..++.+| ..+.... ..|+.+|.++..
T Consensus 282 ~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 282 YVDHHGDRLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp EEEEETTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred EEEccCCEEEEeeCCCCCCcEEEEecccccc
Confidence 2334466655 2334321 367777777654
No 140
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=95.85 E-value=0.19 Score=54.27 Aligned_cols=138 Identities=16% Similarity=0.140 Sum_probs=101.7
Q ss_pred CCCCceeeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEE
Q 023864 85 DQSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLF 163 (276)
Q Consensus 85 ~~~~~~~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~Ly 163 (276)
.....+...+++..+-- ...=.+-+.++||+.+++|.| -+++|.+||..|.+.+.... +..-+.-|++++. ++.+
T Consensus 111 g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~~lvS~s--~DnsViiwn~~tF~~~~vl~-~H~s~VKGvs~DP~Gky~ 186 (942)
T KOG0973|consen 111 GGAKNVESWKVVSILRG-HDSDVLDVNWSPDDSLLVSVS--LDNSVIIWNAKTFELLKVLR-GHQSLVKGVSWDPIGKYF 186 (942)
T ss_pred ccccccceeeEEEEEec-CCCccceeccCCCccEEEEec--ccceEEEEccccceeeeeee-cccccccceEECCccCee
Confidence 34555667777777752 233457999999999999999 78999999999997665543 3345667999987 7877
Q ss_pred EEEeeCCEEEEEeCCCCcEEEEEecCCCCe--------eEEeeCCCEEEEEC----CCceEEEEcCCCCcEEEEE
Q 023864 164 QVTWLQKTGFIYDQNNLNKLEEFTHQMKDG--------WGLATDGKVLFGSD----GSSMLYQIDPQTLKVIRKD 226 (276)
Q Consensus 164 qlTwk~~~v~V~D~~tlk~i~~~~~~~~EG--------WGLT~Dg~~L~vSD----GS~~L~viDp~t~~vi~~I 226 (276)
...-.++++.||+..++...+.+.-+-.|- -+-+|||++|-..+ |...+.+|+-+|-+.-...
T Consensus 187 ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~L 261 (942)
T KOG0973|consen 187 ASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDL 261 (942)
T ss_pred eeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeee
Confidence 778888999999999988888885331011 11368999998865 4778899998877654433
No 141
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.81 E-value=0.58 Score=44.42 Aligned_cols=36 Identities=22% Similarity=0.331 Sum_probs=25.9
Q ss_pred eeEEEEEEec--CCCCCceEEEEecCCEEEEEcCCCCC
Q 023864 92 TIQVVNEFPH--DPRAFTQGLLYAENDTLFESTGLYGR 127 (276)
Q Consensus 92 t~~Vv~~~Ph--d~~aFTQGL~~~~dg~LyeStG~yg~ 127 (276)
.-.|+...|. ...-+..+|.|.|||.||.++|..+.
T Consensus 99 ~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 99 EEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred ceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 3456677787 56677788999999999999997654
No 142
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.75 E-value=0.2 Score=47.99 Aligned_cols=91 Identities=15% Similarity=0.298 Sum_probs=66.5
Q ss_pred CCCcEEEEeecCCCceEEEEEEeC---CEEEEEEeeCCEEEEEeCCCCcEEEEEecC---CCCeeE-EeeCCCEEEEECC
Q 023864 136 ETGKVEAINQMEGSYFGEGLTLLG---EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ---MKDGWG-LATDGKVLFGSDG 208 (276)
Q Consensus 136 ~tgkv~~~~~l~~~~FgEGit~~g---~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~---~~EGWG-LT~Dg~~L~vSDG 208 (276)
+.||++..+.||.+ |-||+.+. ..++.+---..-..+||+++.+.+.++.-+ .-.|-| +++||.+||.|.+
T Consensus 56 eaGk~v~~~~lpaR--~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEn 133 (366)
T COG3490 56 EAGKIVFATALPAR--GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATEN 133 (366)
T ss_pred cCCceeeeeecccc--cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecC
Confidence 46889999999988 77888875 566666666677888999999998888643 225666 7999999999874
Q ss_pred -----CceEEEEcC-CCCcEEEEEEe
Q 023864 209 -----SSMLYQIDP-QTLKVIRKDIV 228 (276)
Q Consensus 209 -----S~~L~viDp-~t~~vi~~I~V 228 (276)
-.-|-+.|. +-|+-+.++..
T Consensus 134 dfd~~rGViGvYd~r~~fqrvgE~~t 159 (366)
T COG3490 134 DFDPNRGVIGVYDAREGFQRVGEFST 159 (366)
T ss_pred CCCCCCceEEEEecccccceeccccc
Confidence 224556664 34566666655
No 143
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.72 E-value=0.64 Score=49.30 Aligned_cols=134 Identities=15% Similarity=0.124 Sum_probs=91.6
Q ss_pred EEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCCEEE
Q 023864 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGF 173 (276)
Q Consensus 95 Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~~v~ 173 (276)
|++.--| ..-+--++|+|||++...++ .+.+|.+||...|--..+..-... =-.|+.+. .++.....-.+|+|-
T Consensus 343 VlKQQgH--~~~i~~l~YSpDgq~iaTG~--eDgKVKvWn~~SgfC~vTFteHts-~Vt~v~f~~~g~~llssSLDGtVR 417 (893)
T KOG0291|consen 343 VLKQQGH--SDRITSLAYSPDGQLIATGA--EDGKVKVWNTQSGFCFVTFTEHTS-GVTAVQFTARGNVLLSSSLDGTVR 417 (893)
T ss_pred eeecccc--ccceeeEEECCCCcEEEecc--CCCcEEEEeccCceEEEEeccCCC-ceEEEEEEecCCEEEEeecCCeEE
Confidence 3444444 33456899999999988555 899999999999865444332221 01234443 345555666899999
Q ss_pred EEeCCCCcEEEEEecCCCCeeE---EeeC--CCEEEEECC-CceEEEEcCCCCcEEEEEEeeeCCEeeee
Q 023864 174 IYDQNNLNKLEEFTHQMKDGWG---LATD--GKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRN 237 (276)
Q Consensus 174 V~D~~tlk~i~~~~~~~~EGWG---LT~D--g~~L~vSDG-S~~L~viDp~t~~vi~~I~V~~~g~pv~~ 237 (276)
.+|....+.-++|..| +... ++-| |+.+...+- +=.|++++.+|++++..+.=.+ .||..
T Consensus 418 AwDlkRYrNfRTft~P--~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHE--gPVs~ 483 (893)
T KOG0291|consen 418 AWDLKRYRNFRTFTSP--EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHE--GPVSG 483 (893)
T ss_pred eeeecccceeeeecCC--CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCC--Cccee
Confidence 9999999999999765 4433 4445 777777664 5589999999999876655443 35554
No 144
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=95.71 E-value=0.54 Score=44.53 Aligned_cols=131 Identities=16% Similarity=0.179 Sum_probs=89.8
Q ss_pred CCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC-CceEEEEEEe--CCEEEEEEeeCCEEEEEeCCCCc
Q 023864 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLN 181 (276)
Q Consensus 105 aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~-~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~tlk 181 (276)
+-.+-+.+.-||+-..|.. -+.++++++++-++.......-. .---+-+..+ +..++..+.-++++-++|..+.|
T Consensus 21 ~~v~Sv~wn~~g~~lasgs--~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k 98 (313)
T KOG1407|consen 21 QKVHSVAWNCDGTKLASGS--FDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGK 98 (313)
T ss_pred hcceEEEEcccCceeeecc--cCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCc
Confidence 3346677777776555433 45678888888774432211111 1111223333 35788889999999999999999
Q ss_pred EEEEEecCCCCeeEEe--eCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE
Q 023864 182 KLEEFTHQMKDGWGLA--TDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (276)
Q Consensus 182 ~i~~~~~~~~EGWGLT--~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i 244 (276)
.+.++... +|-.-++ |||++..+.|-.+.|.+||..++++..+-+-.. ..||+.|.
T Consensus 99 ~~~~i~~~-~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~------e~ne~~w~ 156 (313)
T KOG1407|consen 99 CTARIETK-GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF------EVNEISWN 156 (313)
T ss_pred EEEEeecc-CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc------eeeeeeec
Confidence 99999765 4666554 799999999999999999999998876544432 45666655
No 145
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=95.68 E-value=0.94 Score=42.41 Aligned_cols=95 Identities=13% Similarity=0.094 Sum_probs=57.5
Q ss_pred EecCCEEEEEcCCCCCCeEEEEeCC--CCcEEEEeecC-CCceEEEEEEeCCEEEEEEeeC-----------CEEEEEeC
Q 023864 112 YAENDTLFESTGLYGRSSVRRVALE--TGKVEAINQME-GSYFGEGLTLLGEKLFQVTWLQ-----------KTGFIYDQ 177 (276)
Q Consensus 112 ~~~dg~LyeStG~yg~S~I~~iDl~--tgkv~~~~~l~-~~~FgEGit~~g~~LyqlTwk~-----------~~v~V~D~ 177 (276)
.. +++||+..| +..+.+.++|++ +.+-....+++ .....-+++..+++||++-=.. +.++.||+
T Consensus 15 ~~-~~~vyv~GG-~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~ 92 (346)
T TIGR03547 15 II-GDKVYVGLG-SAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDP 92 (346)
T ss_pred EE-CCEEEEEcc-ccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEEC
Confidence 44 579999766 456789999974 34444444565 2334557888899999986431 46889998
Q ss_pred CCCcEEEEE-ecCC-CCeeEEe-eCCCEEEEECC
Q 023864 178 NNLNKLEEF-THQM-KDGWGLA-TDGKVLFGSDG 208 (276)
Q Consensus 178 ~tlk~i~~~-~~~~-~EGWGLT-~Dg~~L~vSDG 208 (276)
.+.+-..-- +.+. ..|-+.+ .-+..||+--|
T Consensus 93 ~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG 126 (346)
T TIGR03547 93 KKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGG 126 (346)
T ss_pred CCCEEecCCCCCCCcccceeEEEEeCCEEEEEcC
Confidence 765533211 2221 2233333 45667777544
No 146
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=95.68 E-value=0.34 Score=48.45 Aligned_cols=74 Identities=9% Similarity=0.077 Sum_probs=49.1
Q ss_pred EEeeCCCEEEEEC---------C----CceEEEEcCCCCcEEEEEEeee--C-CE-------------------eeeeee
Q 023864 195 GLATDGKVLFGSD---------G----SSMLYQIDPQTLKVIRKDIVRY--K-GR-------------------EVRNLN 239 (276)
Q Consensus 195 GLT~Dg~~L~vSD---------G----S~~L~viDp~t~~vi~~I~V~~--~-g~-------------------pv~~lN 239 (276)
-.-++|..|+.+. + .+.|..+| .+++++..+...+ + .+ ---|+|
T Consensus 196 ~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~N 274 (477)
T PF05935_consen 196 DELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHIN 274 (477)
T ss_dssp EE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EE
T ss_pred EECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccC
Confidence 3456788887654 1 67899999 9999999998864 1 11 114789
Q ss_pred eeEEEC--CEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 240 ELEFIK--GEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 240 ELE~id--G~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
-+.|.. +.|.++.-.. +.|++||.+|+++.
T Consensus 275 si~yd~~dd~iivSsR~~-s~V~~Id~~t~~i~ 306 (477)
T PF05935_consen 275 SIDYDPSDDSIIVSSRHQ-SAVIKIDYRTGKIK 306 (477)
T ss_dssp EEEEETTTTEEEEEETTT--EEEEEE-TTS-EE
T ss_pred ccEEeCCCCeEEEEcCcc-eEEEEEECCCCcEE
Confidence 999985 7899999999 99999999997654
No 147
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.63 E-value=0.69 Score=44.61 Aligned_cols=121 Identities=13% Similarity=0.160 Sum_probs=77.8
Q ss_pred CceEEEEEEe--CCEEEEEEeeCCEEEEEeCCCCcEE---EEEecC-CCCeeE---EeeCCCEEEEE----C--------
Q 023864 149 SYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKL---EEFTHQ-MKDGWG---LATDGKVLFGS----D-------- 207 (276)
Q Consensus 149 ~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~tlk~i---~~~~~~-~~EGWG---LT~Dg~~L~vS----D-------- 207 (276)
-|.|-.|+.. ++.||..+.+++++-|||. +++++ +.|.-+ .|.|++ +-.-|..|||+ |
T Consensus 139 vYkGLAi~~~~~~~~LYaadF~~g~IDVFd~-~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~ 217 (336)
T TIGR03118 139 VYKGLAVGPTGGGDYLYAANFRQGRIDVFKG-SFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVA 217 (336)
T ss_pred eeeeeEEeecCCCceEEEeccCCCceEEecC-ccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCccccccc
Confidence 4554444433 6899999999999999995 44432 334322 345554 66778999986 2
Q ss_pred --CCceEEEEcCCCCcEEEEEEeee-----CCEeeeeeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEEEEEE
Q 023864 208 --GSSMLYQIDPQTLKVIRKDIVRY-----KGREVRNLNELEFIKGEVWANVWQVWPCIPYAYLQAFGSSLVYV 274 (276)
Q Consensus 208 --GS~~L~viDp~t~~vi~~I~V~~-----~g~pv~~lNELE~idG~lyANvw~s~d~I~vIDp~T~~v~l~~~ 274 (276)
|-..|-++|+. ++.++++..+. +|..+.- -+.-.-.|.|.+.++.+ .+|-+.||.+|+-. ++|
T Consensus 218 G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~AP-a~FG~~sg~lLVGNFGD-G~InaFD~~sG~~~-g~L 287 (336)
T TIGR03118 218 GAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAP-ESFGSLSGALLVGNFGD-GTINAYDPQSGAQL-GQL 287 (336)
T ss_pred CCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeCh-hhhCCCCCCeEEeecCC-ceeEEecCCCCcee-eee
Confidence 12377888865 77888876542 2221110 00111257899999998 99999999996643 555
No 148
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=95.61 E-value=0.25 Score=46.34 Aligned_cols=81 Identities=19% Similarity=0.173 Sum_probs=49.6
Q ss_pred CeEEEEeCCCCcEEEEeecCC-CceEEEEEEeCCEEEEEEee------CCEEEEEe--CC--CCcEEEEEecCC---CCe
Q 023864 128 SSVRRVALETGKVEAINQMEG-SYFGEGLTLLGEKLFQVTWL------QKTGFIYD--QN--NLNKLEEFTHQM---KDG 193 (276)
Q Consensus 128 S~I~~iDl~tgkv~~~~~l~~-~~FgEGit~~g~~LyqlTwk------~~~v~V~D--~~--tlk~i~~~~~~~---~EG 193 (276)
+.+.+||+.+++-...-++|. ..++-+++..+++||++-=. ...+++|| ++ ..+.+..++.+. ++|
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~ 247 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEG 247 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCcccc
Confidence 679999999998766667774 45677888999999998532 23355554 44 444444444321 123
Q ss_pred -eE--EeeCCCEEEEECC
Q 023864 194 -WG--LATDGKVLFGSDG 208 (276)
Q Consensus 194 -WG--LT~Dg~~L~vSDG 208 (276)
.+ .+.-+..||+-=|
T Consensus 248 ~~~~~a~~~~~~Iyv~GG 265 (346)
T TIGR03547 248 LAGAFAGISNGVLLVAGG 265 (346)
T ss_pred ccEEeeeEECCEEEEeec
Confidence 12 3334556777544
No 149
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.38 E-value=0.3 Score=47.84 Aligned_cols=148 Identities=17% Similarity=0.175 Sum_probs=98.7
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCC---cEEEEeecC-------------CCceEEEEEE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETG---KVEAINQME-------------GSYFGEGLTL 157 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tg---kv~~~~~l~-------------~~~FgEGit~ 157 (276)
.-+.++|- +.-|..=+.+.+||+|+.|++ .+..|++|-.+|+ .+.+.++.+ .-.++.|-+
T Consensus 226 ~cv~t~~~-h~ewvr~v~v~~DGti~As~s--~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~- 301 (406)
T KOG0295|consen 226 YCVKTFPG-HSEWVRMVRVNQDGTIIASCS--NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGST- 301 (406)
T ss_pred eeEEeccC-chHhEEEEEecCCeeEEEecC--CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCC-
Confidence 34677764 355889999999999999988 8899999999998 343433322 112222222
Q ss_pred eCCEEEEEEeeCCEEEEEeCCCCcEEEEEe-cC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEee
Q 023864 158 LGEKLFQVTWLQKTGFIYDQNNLNKLEEFT-HQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREV 235 (276)
Q Consensus 158 ~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~-~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv 235 (276)
.+...-..--+++++-++|..|...+-++. +. .--|..+.|-|++|+----..+|.++|.++.+-.+.+.-..
T Consensus 302 ~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~----- 376 (406)
T KOG0295|consen 302 NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHE----- 376 (406)
T ss_pred CCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCc-----
Confidence 123444555578999999999999998885 22 12344577888887663346789999999998877776432
Q ss_pred eeeeeeEEECCEEEE
Q 023864 236 RNLNELEFIKGEVWA 250 (276)
Q Consensus 236 ~~lNELE~idG~lyA 250 (276)
+..+-|.+.+...|+
T Consensus 377 hfvt~lDfh~~~p~V 391 (406)
T KOG0295|consen 377 HFVTSLDFHKTAPYV 391 (406)
T ss_pred ceeEEEecCCCCceE
Confidence 344444555444443
No 150
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.37 E-value=0.26 Score=49.07 Aligned_cols=176 Identities=13% Similarity=0.060 Sum_probs=113.5
Q ss_pred eeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEE--eecCCCceEEEEEEeCCEEEEEEee
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAI--NQMEGSYFGEGLTLLGEKLFQVTWL 168 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~--~~l~~~~FgEGit~~g~~LyqlTwk 168 (276)
.+-+....||+....-.+--++.|||.=++ ||. -+-.+..||++......= +.. +...-..+|.+|..++.++ .
T Consensus 299 ~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V-~Gs-~dr~i~~wdlDgn~~~~W~gvr~-~~v~dlait~Dgk~vl~v~-~ 374 (519)
T KOG0293|consen 299 DTGDLRHLYPSGLGFSVSSCAWCPDGFRFV-TGS-PDRTIIMWDLDGNILGNWEGVRD-PKVHDLAITYDGKYVLLVT-V 374 (519)
T ss_pred CcchhhhhcccCcCCCcceeEEccCCceeE-ecC-CCCcEEEecCCcchhhccccccc-ceeEEEEEcCCCcEEEEEe-c
Confidence 455677788886333446678889987665 452 456788999975432111 111 4567777888899999888 7
Q ss_pred CCEEEEEeCCCCcEEEEEecC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECC-
Q 023864 169 QKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG- 246 (276)
Q Consensus 169 ~~~v~V~D~~tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG- 246 (276)
+.++++|+..+....+-+..+ .---..++.||+...++-....++.+|.+..+++++-.-..+|+-+-+- |.+|
T Consensus 375 d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS----CFgg~ 450 (519)
T KOG0293|consen 375 DKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRS----CFGGG 450 (519)
T ss_pred ccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEe----ccCCC
Confidence 889999999888777666543 1123347789999999889999999999977665543332233322111 2333
Q ss_pred -EEEEEeCCCCCeEEEEeCCCCcEEEEEEe
Q 023864 247 -EVWANVWQVWPCIPYAYLQAFGSSLVYVT 275 (276)
Q Consensus 247 -~lyANvw~s~d~I~vIDp~T~~v~l~~~~ 275 (276)
.-|+.-...|+.|.+=+-.+|+ .|++++
T Consensus 451 ~~~fiaSGSED~kvyIWhr~sgk-ll~~Ls 479 (519)
T KOG0293|consen 451 NDKFIASGSEDSKVYIWHRISGK-LLAVLS 479 (519)
T ss_pred CcceEEecCCCceEEEEEccCCc-eeEeec
Confidence 2455555554677777777744 446655
No 151
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=95.36 E-value=0.22 Score=49.33 Aligned_cols=118 Identities=14% Similarity=0.185 Sum_probs=85.2
Q ss_pred cCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecC---CCCeeE---
Q 023864 122 TGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ---MKDGWG--- 195 (276)
Q Consensus 122 tG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~---~~EGWG--- 195 (276)
+|-.. -.||.||..++.....++++...=.--+...+.+|-.. -.++.+-++|..++++...|.-+ -.--|.
T Consensus 317 SgH~D-kkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLss-sRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv 394 (459)
T KOG0288|consen 317 SGHFD-KKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSS-SRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV 394 (459)
T ss_pred ecccc-cceEEEeccCCceeeEeecCcceeeEeeccCCeEEeee-cCCCceeeeecccccEEEEeeccccccccccceeE
Confidence 45433 45999999999999999999876655555556666666 78999999999999999999743 112244
Q ss_pred EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE
Q 023864 196 LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (276)
Q Consensus 196 LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i 244 (276)
++|||.++-..-....|++++..|.|+.+...-.. .+ ..++-++|.
T Consensus 395 fSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~--s~-~aI~s~~W~ 440 (459)
T KOG0288|consen 395 FSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLST--SN-AAITSLSWN 440 (459)
T ss_pred ECCCCceeeeccCCCcEEEEEccCceEEEEeccCC--CC-cceEEEEEc
Confidence 67888776664446689999999999987766532 11 135555654
No 152
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=95.36 E-value=0.55 Score=44.98 Aligned_cols=140 Identities=13% Similarity=0.001 Sum_probs=77.5
Q ss_pred CeEEEEeCCCCcEEEEeecCC-CceEEEEEEeCCEEEEEEee------CCEE--EEEeCCCCcE--EEEEecCC----CC
Q 023864 128 SSVRRVALETGKVEAINQMEG-SYFGEGLTLLGEKLFQVTWL------QKTG--FIYDQNNLNK--LEEFTHQM----KD 192 (276)
Q Consensus 128 S~I~~iDl~tgkv~~~~~l~~-~~FgEGit~~g~~LyqlTwk------~~~v--~V~D~~tlk~--i~~~~~~~----~E 192 (276)
+.|.+||+++++-...-++|. ...+-+++..+++||++-=. ...+ +.+|+++.+- +..++.+. ++
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~ 268 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQE 268 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCC
Confidence 579999999988765556764 55677888899999998632 2223 3455554443 33333220 12
Q ss_pred ee-E--EeeCCCEEEEECCCc-----------------------eEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECC
Q 023864 193 GW-G--LATDGKVLFGSDGSS-----------------------MLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG 246 (276)
Q Consensus 193 GW-G--LT~Dg~~L~vSDGS~-----------------------~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG 246 (276)
++ + .+.-++.||+.=|.+ .+.++||++.+-.. +.....|.... -....+|
T Consensus 269 ~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~---~~~lp~~r~~~-~av~~~~ 344 (376)
T PRK14131 269 GVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQK---VGELPQGLAYG-VSVSWNN 344 (376)
T ss_pred ccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccc---cCcCCCCccce-EEEEeCC
Confidence 32 2 223345677754421 24567888765432 11111111111 1335578
Q ss_pred EEEEEeCCCC-----CeEEEEeCCCCcEEE
Q 023864 247 EVWANVWQVW-----PCIPYAYLQAFGSSL 271 (276)
Q Consensus 247 ~lyANvw~s~-----d~I~vIDp~T~~v~l 271 (276)
+||+-=..+. +.|.++.++.++.++
T Consensus 345 ~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 345 GVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred EEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 8776554321 478888888755543
No 153
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=95.30 E-value=0.19 Score=48.94 Aligned_cols=135 Identities=16% Similarity=0.194 Sum_probs=97.5
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEE-EEEe--CCEEEEEEee
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEG-LTLL--GEKLFQVTWL 168 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEG-it~~--g~~LyqlTwk 168 (276)
+-+.++++.- ...|+.-..|.+||.-..|+. .+..|.+|+..|++-+.+.+.+...++.- +-+. |-.-+++-.+
T Consensus 337 SGK~LKEfrG-HsSyvn~a~ft~dG~~iisaS--sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr 413 (508)
T KOG0275|consen 337 SGKCLKEFRG-HSSYVNEATFTDDGHHIISAS--SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR 413 (508)
T ss_pred cchhHHHhcC-ccccccceEEcCCCCeEEEec--CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC
Confidence 3455666653 588999999999998666666 67899999999987666664443222211 1111 3455566667
Q ss_pred CCEEEEEeCCCCcEEEEEecCCCCeeE-----EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeee
Q 023864 169 QKTGFIYDQNNLNKLEEFTHQMKDGWG-----LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 169 ~~~v~V~D~~tlk~i~~~~~~~~EGWG-----LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~ 230 (276)
++++++.+. ..+++++|..+..||=. |+|-|+++|.--.+..+|-+...++++.+++.|.+
T Consensus 414 sntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE 479 (508)
T KOG0275|consen 414 SNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE 479 (508)
T ss_pred CCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc
Confidence 888888874 46777888766556633 78899999997778899999999999999999975
No 154
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.26 E-value=1.9 Score=43.56 Aligned_cols=172 Identities=11% Similarity=0.083 Sum_probs=105.3
Q ss_pred CceeeeEEEEEE--ecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCc-eEEEEEEeCCEEEE
Q 023864 88 PSIYTIQVVNEF--PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY-FGEGLTLLGEKLFQ 164 (276)
Q Consensus 88 ~~~~t~~Vv~~~--Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~-FgEGit~~g~~Lyq 164 (276)
+....++-++.. -|..+.=.+-+.|+|.-.|...+|+-|.=+|..+|-++...+..+.|..-| +-.-++..|.....
T Consensus 195 ~~tl~~krlkDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 195 PGTLNIKRLKDANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred CceeeeEeecccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEE
Confidence 344455555544 244556667889999777877789767777888888887777776555432 22223334442333
Q ss_pred EEeeCCEEEEEeCCCCcEEEEEe-cC----CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeee
Q 023864 165 VTWLQKTGFIYDQNNLNKLEEFT-HQ----MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLN 239 (276)
Q Consensus 165 lTwk~~~v~V~D~~tlk~i~~~~-~~----~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lN 239 (276)
..-+..-.+.||..+.|+.+-=+ ++ .-|-..+++|++.|...--...|+++...|.+.+.+++..- .+-
T Consensus 275 ~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG------~v~ 348 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEG------VVS 348 (514)
T ss_pred ecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeecc------EEe
Confidence 33455677889988777654322 22 12556688999966553338899999999999988877752 333
Q ss_pred eeEEE-CCE-EEEEeCCCCCeEEEEeCCCC
Q 023864 240 ELEFI-KGE-VWANVWQVWPCIPYAYLQAF 267 (276)
Q Consensus 240 ELE~i-dG~-lyANvw~s~d~I~vIDp~T~ 267 (276)
+..|. ||+ ||+.+ .+ ..|++.|..+.
T Consensus 349 ~~~fsSdsk~l~~~~-~~-GeV~v~nl~~~ 376 (514)
T KOG2055|consen 349 DFTFSSDSKELLASG-GT-GEVYVWNLRQN 376 (514)
T ss_pred eEEEecCCcEEEEEc-CC-ceEEEEecCCc
Confidence 33343 443 44443 34 45666555553
No 155
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=95.25 E-value=0.56 Score=47.26 Aligned_cols=153 Identities=10% Similarity=0.067 Sum_probs=100.5
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEe-ecCCCce-------EEEEEEeC-CEEEEEEeeCCEEEE
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN-QMEGSYF-------GEGLTLLG-EKLFQVTWLQKTGFI 174 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~-~l~~~~F-------gEGit~~g-~~LyqlTwk~~~v~V 174 (276)
+.=+-+|.|.|.|.|+.|+- .+..+..|....+.-.+.. .-.+.++ |-+..=.+ +......-.+.+|.+
T Consensus 359 ~g~V~alk~n~tg~LLaS~S--dD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~l 436 (524)
T KOG0273|consen 359 HGEVNALKWNPTGSLLASCS--DDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKL 436 (524)
T ss_pred cCceEEEEECCCCceEEEec--CCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEE
Confidence 44457899998889988877 8888999885543221111 0001111 00000011 223333346899999
Q ss_pred EeCCCCcEEEEE-ecC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEE
Q 023864 175 YDQNNLNKLEEF-THQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWAN 251 (276)
Q Consensus 175 ~D~~tlk~i~~~-~~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyAN 251 (276)
||...+..+.+| .++ .-.-..+.|||++|---+-+..|++++.++.++.+.-.=+. .++||-|- +|.....
T Consensus 437 wdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~------~Ifel~Wn~~G~kl~~ 510 (524)
T KOG0273|consen 437 WDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG------GIFELCWNAAGDKLGA 510 (524)
T ss_pred EEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC------eEEEEEEcCCCCEEEE
Confidence 999999999999 333 12445578999999888888999999999999987765443 48899886 4544444
Q ss_pred eCCCCCeEEEEeCC
Q 023864 252 VWQVWPCIPYAYLQ 265 (276)
Q Consensus 252 vw~s~d~I~vIDp~ 265 (276)
+... +.|.++|..
T Consensus 511 ~~sd-~~vcvldlr 523 (524)
T KOG0273|consen 511 CASD-GSVCVLDLR 523 (524)
T ss_pred EecC-CCceEEEec
Confidence 5455 888888853
No 156
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.24 E-value=0.5 Score=45.24 Aligned_cols=116 Identities=14% Similarity=0.113 Sum_probs=68.6
Q ss_pred eEEEEEEeC-CEEEEEEee-----------C-CEEEEEeCC--CCc--EEEEEecC--CCCeeEEeeCCCEEEEECCCce
Q 023864 151 FGEGLTLLG-EKLFQVTWL-----------Q-KTGFIYDQN--NLN--KLEEFTHQ--MKDGWGLATDGKVLFGSDGSSM 211 (276)
Q Consensus 151 FgEGit~~g-~~LyqlTwk-----------~-~~v~V~D~~--tlk--~i~~~~~~--~~EGWGLT~Dg~~L~vSDGS~~ 211 (276)
.+++|+++. ++||++... . +++.+++.. +.+ ....|.-+ .+.|..+.++| |||++.. +
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~-~ 91 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP-D 91 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC-e
Confidence 466888875 799999752 2 488888653 223 23344322 34666666666 9999844 5
Q ss_pred EEEE-cCCC-CcE--EEEEEee-eC---CEeeeeeeeeEEE-CCEEEEEeCCC------------C------CeEEEEeC
Q 023864 212 LYQI-DPQT-LKV--IRKDIVR-YK---GREVRNLNELEFI-KGEVWANVWQV------------W------PCIPYAYL 264 (276)
Q Consensus 212 L~vi-Dp~t-~~v--i~~I~V~-~~---g~pv~~lNELE~i-dG~lyANvw~s------------~------d~I~vIDp 264 (276)
|+.+ |.+. .+. .+++-+. .. ..+.+.+|-+.+- ||+||+++... . ..|.++||
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 7655 6542 111 1122222 11 1134567778874 78999987621 0 25999999
Q ss_pred CCCcE
Q 023864 265 QAFGS 269 (276)
Q Consensus 265 ~T~~v 269 (276)
.+++.
T Consensus 172 dg~~~ 176 (367)
T TIGR02604 172 DGGKL 176 (367)
T ss_pred CCCeE
Confidence 98654
No 157
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=95.22 E-value=1.6 Score=44.60 Aligned_cols=149 Identities=14% Similarity=0.022 Sum_probs=92.6
Q ss_pred ecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCc-eEEEEEEeCCEEEEEEeeCCEEEEEeCC
Q 023864 100 PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY-FGEGLTLLGEKLFQVTWLQKTGFIYDQN 178 (276)
Q Consensus 100 Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~-FgEGit~~g~~LyqlTwk~~~v~V~D~~ 178 (276)
.||..-| +|..-.+|+|.- .| .+-+|..|| ..-+-++.+++|+.+ +.--++.-+..||+=|-++..++===-+
T Consensus 285 aH~ggv~--~L~~lr~GtllS-Gg--KDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~ 358 (626)
T KOG2106|consen 285 AHDGGVF--SLCMLRDGTLLS-GG--KDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLEN 358 (626)
T ss_pred ecCCceE--EEEEecCccEee-cC--ccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecC
Confidence 7888888 898888999984 44 566799999 566667888899653 2223333334588888777665532223
Q ss_pred CCcEEEEEecCCCCeeEEe-eCCCEEEEECC-CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCC
Q 023864 179 NLNKLEEFTHQMKDGWGLA-TDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQV 255 (276)
Q Consensus 179 tlk~i~~~~~~~~EGWGLT-~Dg~~L~vSDG-S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s 255 (276)
.+.++-.... .|=|||+ +..+.+|++-| ...+..++ ..+++=++.+.+..+.+. +. -| +.|-=-.+
T Consensus 359 ~f~~~v~gh~--delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~------fhpsg-~va~Gt~~ 427 (626)
T KOG2106|consen 359 GFTLTVQGHG--DELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECAD------FHPSG-VVAVGTAT 427 (626)
T ss_pred CceEEEEecc--cceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEee------ccCcc-eEEEeecc
Confidence 3333333332 3889964 55667777776 77888888 667766666665333221 11 23 33333345
Q ss_pred CCeEEEEeCCC
Q 023864 256 WPCIPYAYLQA 266 (276)
Q Consensus 256 ~d~I~vIDp~T 266 (276)
..-.|+|.+|
T Consensus 428 -G~w~V~d~e~ 437 (626)
T KOG2106|consen 428 -GRWFVLDTET 437 (626)
T ss_pred -ceEEEEeccc
Confidence 6677777777
No 158
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=95.15 E-value=0.79 Score=45.12 Aligned_cols=158 Identities=11% Similarity=0.043 Sum_probs=101.9
Q ss_pred CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeC-CEEEEEeCCCCc
Q 023864 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ-KTGFIYDQNNLN 181 (276)
Q Consensus 103 ~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~-~~v~V~D~~tlk 181 (276)
...|+.-+.++|.++.|.+.. ++-.|.+||++||++..+.. +----.+|+++.+.+=|+-.-.+ +.+--||....|
T Consensus 150 HlgWVr~vavdP~n~wf~tgs--~DrtikIwDlatg~Lkltlt-Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nk 226 (460)
T KOG0285|consen 150 HLGWVRSVAVDPGNEWFATGS--ADRTIKIWDLATGQLKLTLT-GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNK 226 (460)
T ss_pred ccceEEEEeeCCCceeEEecC--CCceeEEEEcccCeEEEeec-chhheeeeeeecccCceEEEecCCCeeEEEechhhh
Confidence 478999999999777776544 78899999999999876643 12223679999887767666544 556669999999
Q ss_pred EEEEEecCC--CCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE--CCEEEEEeCCCCC
Q 023864 182 KLEEFTHQM--KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANVWQVWP 257 (276)
Q Consensus 182 ~i~~~~~~~--~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i--dG~lyANvw~s~d 257 (276)
+|+.+.--+ -.+..+.|--+.|+-.-.++.+.++|-.|-.-+....=.. .+|.. ..+- |+.|+-.- ++ .
T Consensus 227 vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~--~~V~~---V~~~~~dpqvit~S-~D-~ 299 (460)
T KOG0285|consen 227 VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHT--NPVAS---VMCQPTDPQVITGS-HD-S 299 (460)
T ss_pred hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCC--Cccee---EEeecCCCceEEec-CC-c
Confidence 998874111 1222333334444443347788999977654443332111 23222 2232 77777544 55 6
Q ss_pred eEEEEeCCCCcEE
Q 023864 258 CIPYAYLQAFGSS 270 (276)
Q Consensus 258 ~I~vIDp~T~~v~ 270 (276)
.|-.=|...|+..
T Consensus 300 tvrlWDl~agkt~ 312 (460)
T KOG0285|consen 300 TVRLWDLRAGKTM 312 (460)
T ss_pred eEEEeeeccCcee
Confidence 7888888886655
No 159
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=95.11 E-value=3.4 Score=39.82 Aligned_cols=173 Identities=17% Similarity=0.182 Sum_probs=120.7
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCC--c--EEEEeecCC-CceEEEEEEeCCEEEEEE
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETG--K--VEAINQMEG-SYFGEGLTLLGEKLFQVT 166 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tg--k--v~~~~~l~~-~~FgEGit~~g~~LyqlT 166 (276)
|-.-++-+|. +.+|+---+|+|.|.+..+.|+ ++.-.+|++.+. + +...-.|+. .-|---+.+.+|.-.+.-
T Consensus 86 TtnK~haipl-~s~WVMtCA~sPSg~~VAcGGL--dN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~ 162 (343)
T KOG0286|consen 86 TTNKVHAIPL-PSSWVMTCAYSPSGNFVACGGL--DNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTG 162 (343)
T ss_pred cccceeEEec-CceeEEEEEECCCCCeEEecCc--CceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEec
Confidence 4445778888 8999999999999999988884 667777888755 2 211222443 345556667676666666
Q ss_pred eeCCEEEEEeCCCCcEEEEEecCCCCeeE--EeeCCCEEEEECC-CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEE
Q 023864 167 WLQKTGFIYDQNNLNKLEEFTHQMKDGWG--LATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF 243 (276)
Q Consensus 167 wk~~~v~V~D~~tlk~i~~~~~~~~EGWG--LT~Dg~~L~vSDG-S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~ 243 (276)
--+.++..+|.++.+++..|.=-.++=.+ |.|..-..|+|-| ...-.++|.....-+++....+ ..+|-+.|
T Consensus 163 SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghe-----sDINsv~f 237 (343)
T KOG0286|consen 163 SGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHE-----SDINSVRF 237 (343)
T ss_pred CCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccc-----cccceEEE
Confidence 67889999999999999999622234334 4563456677776 4456778988887777766654 35666665
Q ss_pred E-CCEEEEEeCCCCCeEEEEeCCCCcEEEEE
Q 023864 244 I-KGEVWANVWQVWPCIPYAYLQAFGSSLVY 273 (276)
Q Consensus 244 i-dG~lyANvw~s~d~I~vIDp~T~~v~l~~ 273 (276)
. +|.-||.--.. ...-..|..+++.+..|
T Consensus 238 fP~G~afatGSDD-~tcRlyDlRaD~~~a~y 267 (343)
T KOG0286|consen 238 FPSGDAFATGSDD-ATCRLYDLRADQELAVY 267 (343)
T ss_pred ccCCCeeeecCCC-ceeEEEeecCCcEEeee
Confidence 5 78888887655 67778898887776554
No 160
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.04 E-value=0.48 Score=47.67 Aligned_cols=158 Identities=9% Similarity=0.074 Sum_probs=103.2
Q ss_pred CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEE---EEEeCCEEEEEEeeCCEEEEEeCCC
Q 023864 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEG---LTLLGEKLFQVTWLQKTGFIYDQNN 179 (276)
Q Consensus 103 ~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEG---it~~g~~LyqlTwk~~~v~V~D~~t 179 (276)
...+ +..|..||+|+..++ ...-|.+||..+.-.++. +..+-++.= ++..++.+++.-=.+.++-.+|.++
T Consensus 69 ~~v~--s~~fR~DG~LlaaGD--~sG~V~vfD~k~r~iLR~--~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~ 142 (487)
T KOG0310|consen 69 DVVY--SVDFRSDGRLLAAGD--ESGHVKVFDMKSRVILRQ--LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST 142 (487)
T ss_pred ccee--EEEeecCCeEEEccC--CcCcEEEeccccHHHHHH--HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence 4444 888888999997555 666799999766322222 111212222 2346788888888888888899888
Q ss_pred CcEEEEEecC--CCCeeEEeeCCCEEEEECC-CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCC
Q 023864 180 LNKLEEFTHQ--MKDGWGLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVW 256 (276)
Q Consensus 180 lk~i~~~~~~--~~EGWGLT~Dg~~L~vSDG-S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~ 256 (276)
-.+..++.-- .--.-.+.+-..++++|-| +..|..+|..+.. ..+---+.|.||... |-.-.|.+.|.. .-
T Consensus 143 a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~--~~v~elnhg~pVe~v--l~lpsgs~iasA-gG- 216 (487)
T KOG0310|consen 143 AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT--SRVVELNHGCPVESV--LALPSGSLIASA-GG- 216 (487)
T ss_pred cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC--ceeEEecCCCceeeE--EEcCCCCEEEEc-CC-
Confidence 8874454311 0011125556678999886 8899999988774 222223467788755 333466888887 44
Q ss_pred CeEEEEeCCCCcEEEE
Q 023864 257 PCIPYAYLQAFGSSLV 272 (276)
Q Consensus 257 d~I~vIDp~T~~v~l~ 272 (276)
|.|-|+|.-+|+..++
T Consensus 217 n~vkVWDl~~G~qll~ 232 (487)
T KOG0310|consen 217 NSVKVWDLTTGGQLLT 232 (487)
T ss_pred CeEEEEEecCCceehh
Confidence 7899999999887664
No 161
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.01 E-value=2.1 Score=43.19 Aligned_cols=110 Identities=16% Similarity=0.140 Sum_probs=77.7
Q ss_pred CCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC-CCceEEEEEE--eCCEEEEEEeeCCEEEEEeCCCC
Q 023864 105 AFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTL--LGEKLFQVTWLQKTGFIYDQNNL 180 (276)
Q Consensus 105 aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~-~~~FgEGit~--~g~~LyqlTwk~~~v~V~D~~tl 180 (276)
+-+.=..|+++ ++++.+++ .+..+..||+.++.+ ...+. ...+--..++ .++++.+.--.++++-+||..+.
T Consensus 111 apv~~~~f~~~d~t~l~s~s--Dd~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~ 186 (487)
T KOG0310|consen 111 APVHVTKFSPQDNTMLVSGS--DDKVVKYWDLSTAYV--QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL 186 (487)
T ss_pred CceeEEEecccCCeEEEecC--CCceEEEEEcCCcEE--EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC
Confidence 33344556765 57887766 677788889988876 33333 2233233333 36889999999999999999988
Q ss_pred -cEEEEEecCCCCeeE--EeeCCCEEEEECCCceEEEEcCCCC
Q 023864 181 -NKLEEFTHQMKDGWG--LATDGKVLFGSDGSSMLYQIDPQTL 220 (276)
Q Consensus 181 -k~i~~~~~~~~EGWG--LT~Dg~~L~vSDGS~~L~viDp~t~ 220 (276)
..+-+++.+ +..- +.-.+..+++|-|.+.+-+||.-++
T Consensus 187 ~~~v~elnhg--~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G 227 (487)
T KOG0310|consen 187 TSRVVELNHG--CPVESVLALPSGSLIASAGGNSVKVWDLTTG 227 (487)
T ss_pred CceeEEecCC--CceeeEEEcCCCCEEEEcCCCeEEEEEecCC
Confidence 778888765 3333 3445668999999999999998854
No 162
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.01 E-value=0.33 Score=50.56 Aligned_cols=112 Identities=21% Similarity=0.237 Sum_probs=82.0
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe---CCEEEEEEeeCCEEEEEeCCCC
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL---GEKLFQVTWLQKTGFIYDQNNL 180 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~---g~~LyqlTwk~~~v~V~D~~tl 180 (276)
.-|.|-|+-+|+|++..-+|. | ..|..- ...+-.+.||+|+.+. +..-|.+-.-++.+-++ +++
T Consensus 351 eiyPq~L~hsPNGrfV~Vcgd-G-EyiIyT---------ala~RnK~fG~~~eFvw~~dsne~avRes~~~vki~--knf 417 (794)
T KOG0276|consen 351 EIYPQTLAHSPNGRFVVVCGD-G-EYIIYT---------ALALRNKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNF 417 (794)
T ss_pred ccchHHhccCCCCcEEEEecC-c-cEEEEE---------eeehhhcccccceeEEEcCCCCeEEEEecCCceEEE--ecc
Confidence 457788999999998877772 2 222111 2234568899999885 33778887777777777 899
Q ss_pred cEEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeC
Q 023864 181 NKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK 231 (276)
Q Consensus 181 k~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~ 231 (276)
|..+.+..++ -...--|..|+.-.+++.+.|.|=++++.+++|.|..+
T Consensus 418 ke~ksi~~~~---~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v~~k 465 (794)
T KOG0276|consen 418 KEHKSIRPDM---SAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEVTSK 465 (794)
T ss_pred eecccccccc---ceeeecCCceEEEEeCCeEEEEEcccceEEEEEeeccc
Confidence 9999987542 13233467777778899999999999999999999863
No 163
>PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A.
Probab=94.95 E-value=0.51 Score=44.55 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=61.8
Q ss_pred EEEEEeeC-CEEEEEeCCCCcEEEEEecC--CCCeeE----E--eeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCC
Q 023864 162 LFQVTWLQ-KTGFIYDQNNLNKLEEFTHQ--MKDGWG----L--ATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKG 232 (276)
Q Consensus 162 LyqlTwk~-~~v~V~D~~tlk~i~~~~~~--~~EGWG----L--T~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g 232 (276)
|+..+-+. +.+.+||.++++++++++++ +|.|.| + ..|..+|+.+.....|..+|. .+++++++.+....
T Consensus 58 L~f~n~~~~~~i~~~Dl~~~~l~~~i~~ekeGpngi~~~~~~~~~~Dsi~l~~~~~~~~l~~~n~-~G~~~~~~~~~~~~ 136 (333)
T PF13970_consen 58 LYFLNNYKSHSIDIYDLDSGKLVKKIPFEKEGPNGIGRPFGFFQNLDSIFLFNSYAFPKLFLFNS-QGEVLKKIDLEEED 136 (333)
T ss_dssp EEEEE-ST--EEEEEETTTTEEEEEEE-BSSSTTB-TT---EEESSSTTSEEEEGGGTEEEEE-T-T--EEEEEE---TT
T ss_pred EEEEcCCCcceEEEEECCCCceeeeeeeeeECCCCccccccceEcCCceEEEecCCcceEEEEcC-CCeEEEEEecccCc
Confidence 33456565 89999999999999999875 455543 2 335556665545688999995 48999999997632
Q ss_pred E---eee---eeeeeEE-ECCEEEEEeC----------CCCCeEEEEeCCCCcEEEE
Q 023864 233 R---EVR---NLNELEF-IKGEVWANVW----------QVWPCIPYAYLQAFGSSLV 272 (276)
Q Consensus 233 ~---pv~---~lNELE~-idG~lyANvw----------~s~d~I~vIDp~T~~v~l~ 272 (276)
. +.. ..|++.. .|+.+|...- ..+..++.||++++++..-
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~ 193 (333)
T PF13970_consen 137 LEFEPSEFPSFSNSPIFIKDNKLYFSQPYHYPFNGDFIEKIPVLAIIDLNTKKVKWL 193 (333)
T ss_dssp S-------BTTTTB--EEETTEEEEE---SSS--GGGGGGSEEEEEEETTT--EEEE
T ss_pred ccccccccccccccceEeCCCeEEEeeecccccccccccCceEEEEEECCCCeEEEE
Confidence 1 111 1234444 3667787654 2213678999999887643
No 164
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.94 E-value=0.17 Score=47.47 Aligned_cols=76 Identities=16% Similarity=0.147 Sum_probs=55.5
Q ss_pred CceeeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC---CEEEE
Q 023864 88 PSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG---EKLFQ 164 (276)
Q Consensus 88 ~~~~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g---~~Lyq 164 (276)
-+..-+++-+.-|. .+.+..|++++.+|.||+.+- ..++|.++|+.|||++.++++|.. =-..+++-| +.+|+
T Consensus 196 nr~~i~dlrk~~~~-e~~~PDGm~ID~eG~L~Va~~--ng~~V~~~dp~tGK~L~eiklPt~-qitsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 196 NRKVIFDLRKSQPF-ESLEPDGMTIDTEGNLYVATF--NGGTVQKVDPTTGKILLEIKLPTP-QITSCCFGGKNLDILYV 271 (310)
T ss_pred CcceeEEeccCCCc-CCCCCCcceEccCCcEEEEEe--cCcEEEEECCCCCcEEEEEEcCCC-ceEEEEecCCCccEEEE
Confidence 33344555555565 567889999998899999865 889999999999999999999932 223445555 46666
Q ss_pred EEe
Q 023864 165 VTW 167 (276)
Q Consensus 165 lTw 167 (276)
.+-
T Consensus 272 T~a 274 (310)
T KOG4499|consen 272 TTA 274 (310)
T ss_pred Eeh
Confidence 654
No 165
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.90 E-value=3.3 Score=40.14 Aligned_cols=147 Identities=12% Similarity=0.084 Sum_probs=95.2
Q ss_pred eEEEEecCCEEEEEcCCCCCCeEEEEeCCCC-cEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCC---CCcEE
Q 023864 108 QGLLYAENDTLFESTGLYGRSSVRRVALETG-KVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQN---NLNKL 183 (276)
Q Consensus 108 QGL~~~~dg~LyeStG~yg~S~I~~iDl~tg-kv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~---tlk~i 183 (276)
.-..++. ...|..- +++-++++|..+- +....-.++-.-++-|..+.|+.+|+..|.+ -..++|.. +-.+.
T Consensus 90 ~Dv~vse-~yvyvad---~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadldd-gfLivdvsdpssP~la 164 (370)
T COG5276 90 ADVRVSE-EYVYVAD---WSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDD-GFLIVDVSDPSSPQLA 164 (370)
T ss_pred heeEecc-cEEEEEc---CCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccC-cEEEEECCCCCCceee
Confidence 4455653 4566642 7788999997653 2222233444456789999999999999944 45556654 44566
Q ss_pred EEEecCCCCeeEEeeCCCEEEEECCCceEEEEcC---CCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCCeEE
Q 023864 184 EEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDP---QTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWPCIP 260 (276)
Q Consensus 184 ~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp---~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d~I~ 260 (276)
+++.++..+-|-..=-|++-|+++-.+-|.++|. ..-+.+.....+..-+.+. .-+.+.|+.++. .-++
T Consensus 165 grya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~------vsdnr~y~vvy~--egvl 236 (370)
T COG5276 165 GRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVS------VSDNRAYLVVYD--EGVL 236 (370)
T ss_pred eeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEE------ecCCeeEEEEcc--cceE
Confidence 7887764444666666999999987788888874 4455555555442222222 447888988854 4566
Q ss_pred EEeCCCC
Q 023864 261 YAYLQAF 267 (276)
Q Consensus 261 vIDp~T~ 267 (276)
.+|..+-
T Consensus 237 ivd~s~~ 243 (370)
T COG5276 237 IVDVSGP 243 (370)
T ss_pred EEecCCC
Confidence 6776553
No 166
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=94.89 E-value=0.13 Score=49.81 Aligned_cols=129 Identities=16% Similarity=0.162 Sum_probs=89.5
Q ss_pred CCCceeeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCc-------EEEEeecCCCceEEEEEEe
Q 023864 86 QSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGK-------VEAINQMEGSYFGEGLTLL 158 (276)
Q Consensus 86 ~~~~~~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgk-------v~~~~~l~~~~FgEGit~~ 158 (276)
+.+-...-.+.+.-+..|..|+.|.-++|||.-+.+. ...+.++.|++...- .+..-....--+.||.|+.
T Consensus 31 qg~~~l~g~~~~~stt~p~nf~kgckWSPDGSciL~~--sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvy 108 (406)
T KOG2919|consen 31 QGPINLGGNVIAFSTTKPLNFLKGCKWSPDGSCILSL--SEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVY 108 (406)
T ss_pred ecceeccCceEEeccCCchhhhccceeCCCCceEEee--cccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEE
Confidence 3344445556666666688999999999999744442 377899999875321 1111111122355666665
Q ss_pred C-------------CEEEEEEeeCCEEEEEeCCCCcEEEEEe-------cCCCCeeEEeeCCCEEEEECCCceEEEEcC
Q 023864 159 G-------------EKLFQVTWLQKTGFIYDQNNLNKLEEFT-------HQMKDGWGLATDGKVLFGSDGSSMLYQIDP 217 (276)
Q Consensus 159 g-------------~~LyqlTwk~~~v~V~D~~tlk~i~~~~-------~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp 217 (276)
+ ..||.++-+++-+.++|.-|.+....+. +...--.++++||..||.-+ .+.|.++|.
T Consensus 109 dy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt 186 (406)
T KOG2919|consen 109 DYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDT 186 (406)
T ss_pred EEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeec
Confidence 3 3678888889999999999999988875 11345667899999999865 677888886
No 167
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=94.81 E-value=0.17 Score=50.65 Aligned_cols=109 Identities=15% Similarity=0.115 Sum_probs=79.5
Q ss_pred CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEE------------
Q 023864 116 DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKL------------ 183 (276)
Q Consensus 116 g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i------------ 183 (276)
.+||- ++ .+..++.||+-.|.++.++.+|..+=+.-+..-+.++|+=| .++++|+.+..++...
T Consensus 189 ~rl~T-aS--~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt-~~G~I~~~~~~~~~~~~~~v~~k~~~~~ 264 (476)
T KOG0646|consen 189 ARLYT-AS--EDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGT-EEGKIFQNLLFKLSGQSAGVNQKGRHEE 264 (476)
T ss_pred ceEEE-ec--CCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecC-CcceEEeeehhcCCcccccccccccccc
Confidence 36773 44 67889999999999999999998766555555556777665 5788888887666511
Q ss_pred -EEEec-CCCCe------eEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEe
Q 023864 184 -EEFTH-QMKDG------WGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIV 228 (276)
Q Consensus 184 -~~~~~-~~~EG------WGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V 228 (276)
.+++. -..+| -+++.||..|+..|-+.+|.++|+.+.+.+|++..
T Consensus 265 ~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~ 317 (476)
T KOG0646|consen 265 NTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT 317 (476)
T ss_pred cceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh
Confidence 11211 01233 45678999999999999999999999999988773
No 168
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=94.78 E-value=0.61 Score=44.12 Aligned_cols=61 Identities=11% Similarity=-0.013 Sum_probs=46.0
Q ss_pred CceEEEEcCCCCcEEEEEEeeeC----------------------CEeeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCC
Q 023864 209 SSMLYQIDPQTLKVIRKDIVRYK----------------------GREVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQ 265 (276)
Q Consensus 209 S~~L~viDp~t~~vi~~I~V~~~----------------------g~pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~ 265 (276)
.+.++.||++|++++-++.+-+. ..-.-++|-++.. +|.+.+..=+. +.|.+||++
T Consensus 95 d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yLiS~R~~-~~i~~I~~~ 173 (299)
T PF14269_consen 95 DDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYLISSRNT-STIYKIDPS 173 (299)
T ss_pred cceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEEEEeccc-CEEEEEECC
Confidence 57899999999999888776430 0112256666654 56788999899 999999999
Q ss_pred CCcEE
Q 023864 266 AFGSS 270 (276)
Q Consensus 266 T~~v~ 270 (276)
||+++
T Consensus 174 tG~I~ 178 (299)
T PF14269_consen 174 TGKII 178 (299)
T ss_pred CCcEE
Confidence 97765
No 169
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=94.72 E-value=2.6 Score=40.37 Aligned_cols=93 Identities=15% Similarity=0.152 Sum_probs=53.7
Q ss_pred CCEEEEEcCCCCCCeEEEEeCCC--CcEEEEeecCC-CceEEEEEEeCCEEEEEEee-----------CCEEEEEeCCCC
Q 023864 115 NDTLFESTGLYGRSSVRRVALET--GKVEAINQMEG-SYFGEGLTLLGEKLFQVTWL-----------QKTGFIYDQNNL 180 (276)
Q Consensus 115 dg~LyeStG~yg~S~I~~iDl~t--gkv~~~~~l~~-~~FgEGit~~g~~LyqlTwk-----------~~~v~V~D~~tl 180 (276)
+++||+..|. ....+.++|+++ ++-....+++. ...+-+++..+++||++-=. -+.+++||+.+.
T Consensus 38 ~~~iyv~gG~-~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n 116 (376)
T PRK14131 38 NNTVYVGLGS-AGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN 116 (376)
T ss_pred CCEEEEEeCC-CCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC
Confidence 5799987664 567788999874 33333334542 22344677889999998432 256889998765
Q ss_pred cEEEEEe-cCC-CCeeEEee-CCCEEEEECC
Q 023864 181 NKLEEFT-HQM-KDGWGLAT-DGKVLFGSDG 208 (276)
Q Consensus 181 k~i~~~~-~~~-~EGWGLT~-Dg~~L~vSDG 208 (276)
+-..--+ .+. ..|-.... .++.||+-=|
T Consensus 117 ~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG 147 (376)
T PRK14131 117 SWQKLDTRSPVGLAGHVAVSLHNGKAYITGG 147 (376)
T ss_pred EEEeCCCCCCCcccceEEEEeeCCEEEEECC
Confidence 4322111 121 12323222 4567777543
No 170
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=94.67 E-value=1 Score=44.83 Aligned_cols=120 Identities=17% Similarity=0.172 Sum_probs=80.7
Q ss_pred EEec-CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEe------------eCCEEEEEeC
Q 023864 111 LYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW------------LQKTGFIYDQ 177 (276)
Q Consensus 111 ~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTw------------k~~~v~V~D~ 177 (276)
.+.| |+..+.|++ ++..|-+|+...+-+..... .|. .-|+-+..++-.+-| -+++++++|.
T Consensus 88 ~w~PfnD~vIASgS--eD~~v~vW~IPe~~l~~~lt---epv-v~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv 161 (472)
T KOG0303|consen 88 DWCPFNDCVIASGS--EDTKVMVWQIPENGLTRDLT---EPV-VELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNV 161 (472)
T ss_pred ccCccCCceeecCC--CCceEEEEECCCcccccCcc---cce-EEEeecceeEEEEeecccchhhHhhccCCceEEEEec
Confidence 3444 367777766 88999999876544433222 111 112323355555555 4799999999
Q ss_pred CCCcEEEEEecC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeee
Q 023864 178 NNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVR 236 (276)
Q Consensus 178 ~tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~ 236 (276)
.|.+.+-++.++ +-.-..+..||..|..+.-+.+|.++||.+.+++..-.-..+-+|..
T Consensus 162 ~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~R 221 (472)
T KOG0303|consen 162 GTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPAR 221 (472)
T ss_pred cCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcce
Confidence 999998888876 32333466799999888899999999999999987763333334433
No 171
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=94.65 E-value=2.7 Score=39.79 Aligned_cols=115 Identities=13% Similarity=0.220 Sum_probs=72.3
Q ss_pred eEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC--CEEEEEEeeCCEEEEEeCCCCcEEE
Q 023864 108 QGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG--EKLFQVTWLQKTGFIYDQNNLNKLE 184 (276)
Q Consensus 108 QGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g--~~LyqlTwk~~~v~V~D~~tlk~i~ 184 (276)
.-+-++|. +.++. +| |++.++.+|+++|++.+..+ +...|---+...+ .+++ .--.++++-++|.+|.|..+
T Consensus 118 Nam~ldP~enSi~~-Ag--GD~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~~qil-sG~EDGtvRvWd~kt~k~v~ 192 (325)
T KOG0649|consen 118 NAMWLDPSENSILF-AG--GDGVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNANGQIL-SGAEDGTVRVWDTKTQKHVS 192 (325)
T ss_pred ceeEeccCCCcEEE-ec--CCeEEEEEEecCCEEEEEEc-CCcceeeeeeecccCccee-ecCCCccEEEEeccccceeE
Confidence 45667765 44554 66 89999999999999877764 2223333334332 2332 22367999999999999888
Q ss_pred EEe-cC----CCCeeE-----EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEe
Q 023864 185 EFT-HQ----MKDGWG-----LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIV 228 (276)
Q Consensus 185 ~~~-~~----~~EGWG-----LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V 228 (276)
.+. |. ..-.|| |+.|.++|+.. |..++..++....+-+..++.
T Consensus 193 ~ie~yk~~~~lRp~~g~wigala~~edWlvCG-gGp~lslwhLrsse~t~vfpi 245 (325)
T KOG0649|consen 193 MIEPYKNPNLLRPDWGKWIGALAVNEDWLVCG-GGPKLSLWHLRSSESTCVFPI 245 (325)
T ss_pred EeccccChhhcCcccCceeEEEeccCceEEec-CCCceeEEeccCCCceEEEec
Confidence 874 22 223344 55566666553 456677777666655555544
No 172
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.64 E-value=0.45 Score=50.03 Aligned_cols=163 Identities=13% Similarity=0.055 Sum_probs=108.0
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEE---EEEEeeCCEEEEEeCCCC
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKL---FQVTWLQKTGFIYDQNNL 180 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~L---yqlTwk~~~v~V~D~~tl 180 (276)
.+-.-.++|+|.|.|..+.| -+..|.+||.+.+-.+...+=-++. .--+.+..+.. ...-.-++.+.+||.++.
T Consensus 105 e~Pvi~ma~~~~g~LlAtgg--aD~~v~VWdi~~~~~th~fkG~gGv-Vssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~ 181 (775)
T KOG0319|consen 105 EAPVITMAFDPTGTLLATGG--ADGRVKVWDIKNGYCTHSFKGHGGV-VSSLLFHPHWNRWLLASGATDGTVRVWNLNDK 181 (775)
T ss_pred CCCeEEEEEcCCCceEEecc--ccceEEEEEeeCCEEEEEecCCCce-EEEEEeCCccchhheeecCCCceEEEEEcccC
Confidence 34446899999887776555 5788999999998876665411121 11233333333 355567899999999866
Q ss_pred cE-EEEEe--cCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCC
Q 023864 181 NK-LEEFT--HQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWP 257 (276)
Q Consensus 181 k~-i~~~~--~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d 257 (276)
.. +.+.. +..--|.++..|+..++..-.+..+.++|..+.+..+++++.+.=..+..+-|-+=..|..+.....+ .
T Consensus 182 ~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~-g 260 (775)
T KOG0319|consen 182 RTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGS-G 260 (775)
T ss_pred chHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCC-c
Confidence 55 22221 11235778889988887766788999999999999999988763333333333111114466777788 8
Q ss_pred eEEEEeCCCCcEE
Q 023864 258 CIPYAYLQAFGSS 270 (276)
Q Consensus 258 ~I~vIDp~T~~v~ 270 (276)
.+-.+|+++++.+
T Consensus 261 ~~~~~d~es~~~~ 273 (775)
T KOG0319|consen 261 VVQYWDSESGKCV 273 (775)
T ss_pred eEEEEecccchhh
Confidence 9999999997643
No 173
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.58 E-value=1.1 Score=47.12 Aligned_cols=159 Identities=18% Similarity=0.197 Sum_probs=109.5
Q ss_pred EEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEee----------cC--CCceEEE-----------
Q 023864 98 EFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ----------ME--GSYFGEG----------- 154 (276)
Q Consensus 98 ~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~----------l~--~~~FgEG----------- 154 (276)
-+-|...- .|..|+||.+++.|+- ++++||.|.++|-.-+...+ +. ..||+-|
T Consensus 447 L~GH~GPV--yg~sFsPd~rfLlScS--ED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 447 LYGHSGPV--YGCSFSPDRRFLLSCS--EDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST 522 (707)
T ss_pred eecCCCce--eeeeecccccceeecc--CCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence 34564344 5999999998888887 89999999998865332221 11 2355544
Q ss_pred ------------------EEEeCCEEEEEEe-eCCEEEEEeCCCCcEEEEEec--CCCCeeEEeeCCCEEEEECCCceEE
Q 023864 155 ------------------LTLLGEKLFQVTW-LQKTGFIYDQNNLNKLEEFTH--QMKDGWGLATDGKVLFGSDGSSMLY 213 (276)
Q Consensus 155 ------------------it~~g~~LyqlTw-k~~~v~V~D~~tlk~i~~~~~--~~~EGWGLT~Dg~~L~vSDGS~~L~ 213 (276)
+.++.+.-|++|- -+++|-+||..+....+-|.= ..-.-..++|+|++|--.+-+..|.
T Consensus 523 d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~ 602 (707)
T KOG0263|consen 523 DHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIK 602 (707)
T ss_pred ccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEE
Confidence 2223344455554 246788899999988888851 1124556889999998888899999
Q ss_pred EEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCC
Q 023864 214 QIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 214 viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T 266 (276)
++|..+.+.++...-. -..++-|++- ||.|.|.-.+. |.|-+=|...
T Consensus 603 iWDl~~~~~v~~l~~H-----t~ti~SlsFS~dg~vLasgg~D-nsV~lWD~~~ 650 (707)
T KOG0263|consen 603 IWDLANGSLVKQLKGH-----TGTIYSLSFSRDGNVLASGGAD-NSVRLWDLTK 650 (707)
T ss_pred EEEcCCCcchhhhhcc-----cCceeEEEEecCCCEEEecCCC-CeEEEEEchh
Confidence 9999998776544322 2345556664 88999999888 9988887654
No 174
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=94.56 E-value=1.6 Score=44.47 Aligned_cols=136 Identities=17% Similarity=0.250 Sum_probs=89.4
Q ss_pred eeeeEEEEEEecCCCCCceEEEEecC-C-------EEEEEcCCCC--------------------CCeEEEEeCCCCcEE
Q 023864 90 IYTIQVVNEFPHDPRAFTQGLLYAEN-D-------TLFESTGLYG--------------------RSSVRRVALETGKVE 141 (276)
Q Consensus 90 ~~t~~Vv~~~Phd~~aFTQGL~~~~d-g-------~LyeStG~yg--------------------~S~I~~iDl~tgkv~ 141 (276)
...+.+|..+..++.....--++.+. + .||.....|+ ...|++++++.|++.
T Consensus 182 ~~~~~~i~s~dl~~~~~~~~~~~~g~~~~vY~S~~~LYia~~~~~~~~~~~~~~~~~~~~~~~~~~T~I~kf~~~~~~~~ 261 (521)
T PF09826_consen 182 GSNYTTITSIDLDPDKASDSTSVLGSGGNVYMSENNLYIASNRYYYEPYAMMRFEASAEPEESNESTTIYKFALDGGKIE 261 (521)
T ss_pred CCcEEEEEEEeCCCCCccceeEEEecCCEEEEeCCcEEEEEecccccccccchhccccccccCCCceEEEEEEccCCcEE
Confidence 34566788887766665555554443 3 3444444343 367999999988764
Q ss_pred --EEeecCC---CceEEEEEEeCCEEEEEEe-----------eCCEEEEEeCCCCcEEEEEecCCCCe---eEEeeCCCE
Q 023864 142 --AINQMEG---SYFGEGLTLLGEKLFQVTW-----------LQKTGFIYDQNNLNKLEEFTHQMKDG---WGLATDGKV 202 (276)
Q Consensus 142 --~~~~l~~---~~FgEGit~~g~~LyqlTw-----------k~~~v~V~D~~tlk~i~~~~~~~~EG---WGLT~Dg~~ 202 (276)
.+..+|. +-| -|..+++.|-++|- ..+.++|+| .++++++++.-= ..| ++.=-.|++
T Consensus 262 y~~sg~V~G~llnqF--smdE~~G~LRvaTT~~~~~~~~~~~s~N~lyVLD-~~L~~vG~l~~l-a~gE~IysvRF~Gd~ 337 (521)
T PF09826_consen 262 YVGSGSVPGYLLNQF--SMDEYDGYLRVATTSGNWWWDSEDTSSNNLYVLD-EDLKIVGSLEGL-APGERIYSVRFMGDR 337 (521)
T ss_pred EEEEEEECcEEcccc--cEeccCCEEEEEEecCcccccCCCCceEEEEEEC-CCCcEeEEcccc-CCCceEEEEEEeCCe
Confidence 3445553 345 45666889999883 357899999 999999999621 111 122235777
Q ss_pred EEEEC--CCceEEEEc---CCCCcEEEEEEee
Q 023864 203 LFGSD--GSSMLYQID---PQTLKVIRKDIVR 229 (276)
Q Consensus 203 L~vSD--GS~~L~viD---p~t~~vi~~I~V~ 229 (276)
.||-= ..|=|++|| |+.-++++.+++.
T Consensus 338 ~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIP 369 (521)
T PF09826_consen 338 AYLVTFRQVDPLFVIDLSDPANPKVLGELKIP 369 (521)
T ss_pred EEEEEEeecCceEEEECCCCCCCceeeEEECc
Confidence 77744 478899997 5558889988885
No 175
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=94.45 E-value=5.2 Score=40.85 Aligned_cols=143 Identities=18% Similarity=0.210 Sum_probs=87.5
Q ss_pred CCCeEEEEeCCCCcEEEEee-c--CCCceEEEEEEeCCEEEEEEeeC-CEEEEEeCC---CCcEEEEEecCCCCeeE--E
Q 023864 126 GRSSVRRVALETGKVEAINQ-M--EGSYFGEGLTLLGEKLFQVTWLQ-KTGFIYDQN---NLNKLEEFTHQMKDGWG--L 196 (276)
Q Consensus 126 g~S~I~~iDl~tgkv~~~~~-l--~~~~FgEGit~~g~~LyqlTwk~-~~v~V~D~~---tlk~i~~~~~~~~EGWG--L 196 (276)
..+.|.++| ++.+++.++. | +++.| +.-+.|++.|++|.+. +-.|++|.. .-+++++++.| ||- |
T Consensus 302 s~N~lyVLD-~~L~~vG~l~~la~gE~Iy--svRF~Gd~~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIP---GfS~YL 375 (521)
T PF09826_consen 302 SSNNLYVLD-EDLKIVGSLEGLAPGERIY--SVRFMGDRAYLVTFRQVDPLFVIDLSDPANPKVLGELKIP---GFSDYL 375 (521)
T ss_pred ceEEEEEEC-CCCcEeEEccccCCCceEE--EEEEeCCeEEEEEEeecCceEEEECCCCCCCceeeEEECc---cchhce
Confidence 568899999 7777766652 3 34666 4466799999999998 999999965 57899999987 444 6
Q ss_pred eeCC-CEEEE--ECCC----------ceEEEEc---CCCCcEEEEEEeeeCCE---eeeeeeeeEEE--CCEEEEEeC--
Q 023864 197 ATDG-KVLFG--SDGS----------SMLYQID---PQTLKVIRKDIVRYKGR---EVRNLNELEFI--KGEVWANVW-- 253 (276)
Q Consensus 197 T~Dg-~~L~v--SDGS----------~~L~viD---p~t~~vi~~I~V~~~g~---pv~~lNELE~i--dG~lyANvw-- 253 (276)
.|-+ .+|+- -|.. =+|..+| |++-+++.+..+++.+. ..++---+-+. .+.+..-+.
T Consensus 376 HP~~e~~LlGiG~~~~~~~~~~~~~GlKisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~dhkAfl~~~~~~ll~~Pv~~~ 455 (521)
T PF09826_consen 376 HPYDENHLLGIGKDTDEDEGTGWTQGLKISLFDVSDPANPKELDKEVIGDRGSYSEALYDHKAFLFDKEKNLLAFPVSSS 455 (521)
T ss_pred eECCCCeEEEEcccCcccccccccceeEEEEEecCCCCCccEeEEEEcCCCCccCccccCceEEEEeCCCCEEEEEEEEc
Confidence 6633 34433 2322 2677776 55567777777754321 11111111133 233332222
Q ss_pred ------CCCCeEEEEeCCCCcEEEEEEe
Q 023864 254 ------QVWPCIPYAYLQAFGSSLVYVT 275 (276)
Q Consensus 254 ------~s~d~I~vIDp~T~~v~l~~~~ 275 (276)
+. =.|..||+++|=...+.|+
T Consensus 456 ~~~~~~~g-~~v~~i~~~~g~~~~g~i~ 482 (521)
T PF09826_consen 456 YGYFNFQG-AYVFSIDPEDGFTLKGKIT 482 (521)
T ss_pred cCccccce-EEEEEEeCCCCeEEEEEEE
Confidence 33 3678888888656656554
No 176
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.44 E-value=1.9 Score=42.30 Aligned_cols=132 Identities=14% Similarity=0.106 Sum_probs=85.0
Q ss_pred CeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCCCeeE---EeeCCC--E
Q 023864 128 SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWG---LATDGK--V 202 (276)
Q Consensus 128 S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~EGWG---LT~Dg~--~ 202 (276)
..+..+++..+..+=.+..|...... -+-.+||.++-. ..+||||.++.+.+.++..-.+.+-| |++... +
T Consensus 68 r~Lkv~~~Kk~~~ICe~~fpt~IL~V--rmNr~RLvV~Le--e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~y 143 (391)
T KOG2110|consen 68 RKLKVVHFKKKTTICEIFFPTSILAV--RMNRKRLVVCLE--ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCY 143 (391)
T ss_pred ceEEEEEcccCceEEEEecCCceEEE--EEccceEEEEEc--ccEEEEecccceeehhhhccCCCccceEeeccCCCCce
Confidence 34555666666566666667664422 223588888874 44999999999999999642134444 444433 4
Q ss_pred EEE-EC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeE-EEEeCCCCcE
Q 023864 203 LFG-SD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVWPCI-PYAYLQAFGS 269 (276)
Q Consensus 203 L~v-SD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I-~vIDp~T~~v 269 (276)
|-. ++ -+..|+++|..+++.+-+|.+.++. +--|.+. +|.+.|.--.. .+| -|++..+|+.
T Consensus 144 lAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~-----lAalafs~~G~llATASeK-GTVIRVf~v~~G~k 208 (391)
T KOG2110|consen 144 LAYPGSTTSGDVVLFDTINLQPVNTINAHKGP-----LAALAFSPDGTLLATASEK-GTVIRVFSVPEGQK 208 (391)
T ss_pred EEecCCCCCceEEEEEcccceeeeEEEecCCc-----eeEEEECCCCCEEEEeccC-ceEEEEEEcCCccE
Confidence 433 33 3779999999999999999987632 2223343 78888877666 544 4556666553
No 177
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.29 E-value=0.25 Score=49.25 Aligned_cols=150 Identities=11% Similarity=0.068 Sum_probs=93.4
Q ss_pred eEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCCEEEEEeCCCCcEEEEE
Q 023864 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (276)
Q Consensus 108 QGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~tlk~i~~~ 186 (276)
-=+.|+||++-..++| -+..+..||..||......+-+...-...++.. ++.=+++--.++.+..+|.+-- .++..
T Consensus 273 ~yi~wSPDdryLlaCg--~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W 349 (519)
T KOG0293|consen 273 SYIMWSPDDRYLLACG--FDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNW 349 (519)
T ss_pred EEEEECCCCCeEEecC--chHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcc
Confidence 3478999988777888 566699999999987665443311112223332 2344666666777777886532 23333
Q ss_pred ec---CCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCE-EEEEeCCCCCeEEE
Q 023864 187 TH---QMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE-VWANVWQVWPCIPY 261 (276)
Q Consensus 187 ~~---~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~-lyANvw~s~d~I~v 261 (276)
.. |.-.-.++|+||++++..+-...+..++.++...++.|.-. .|+...- .. ||+ +.+|. +. +.|-.
T Consensus 350 ~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~---~~its~~---iS~d~k~~LvnL-~~-qei~L 421 (519)
T KOG0293|consen 350 EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE---QPITSFS---ISKDGKLALVNL-QD-QEIHL 421 (519)
T ss_pred cccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc---CceeEEE---EcCCCcEEEEEc-cc-CeeEE
Confidence 22 11234468999999999888889999998876655544433 2333321 22 555 45666 66 77877
Q ss_pred EeCCCCc
Q 023864 262 AYLQAFG 268 (276)
Q Consensus 262 IDp~T~~ 268 (276)
=|.+..+
T Consensus 422 WDl~e~~ 428 (519)
T KOG0293|consen 422 WDLEENK 428 (519)
T ss_pred eecchhh
Confidence 7777533
No 178
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=94.20 E-value=1.6 Score=41.97 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=76.8
Q ss_pred ceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEE--
Q 023864 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLE-- 184 (276)
Q Consensus 107 TQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~-- 184 (276)
.+++++..-.-.+.++| -+.+|..||+.+........-++..| .+++.+++|.+-+ .+..+++||..+++.--
T Consensus 97 i~ci~~~~~~~~vIsgs--WD~~ik~wD~R~~~~~~~~d~~kkVy--~~~v~g~~LvVg~-~~r~v~iyDLRn~~~~~q~ 171 (323)
T KOG1036|consen 97 IRCIEYSYEVGCVISGS--WDKTIKFWDPRNKVVVGTFDQGKKVY--CMDVSGNRLVVGT-SDRKVLIYDLRNLDEPFQR 171 (323)
T ss_pred eEEEEeeccCCeEEEcc--cCccEEEEeccccccccccccCceEE--EEeccCCEEEEee-cCceEEEEEcccccchhhh
Confidence 46888875433555666 67899999999866666667777877 4567788887755 57889999998876422
Q ss_pred ---EEecC--------CCCeeEEeeCCCEEEEECCCceEEEEcCCC--------CcEEEEEEeeeCCEeeeeeeeeEEE
Q 023864 185 ---EFTHQ--------MKDGWGLATDGKVLFGSDGSSMLYQIDPQT--------LKVIRKDIVRYKGREVRNLNELEFI 244 (276)
Q Consensus 185 ---~~~~~--------~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t--------~~vi~~I~V~~~g~pv~~lNELE~i 244 (276)
.++|+ .+||+.+..- ||-=.+-++|+.. |+--+... ++-.-+.-.|-|++.
T Consensus 172 reS~lkyqtR~v~~~pn~eGy~~sSi-------eGRVavE~~d~s~~~~skkyaFkCHr~~~--~~~~~~yPVNai~Fh 241 (323)
T KOG1036|consen 172 RESSLKYQTRCVALVPNGEGYVVSSI-------EGRVAVEYFDDSEEAQSKKYAFKCHRLSE--KDTEIIYPVNAIAFH 241 (323)
T ss_pred ccccceeEEEEEEEecCCCceEEEee-------cceEEEEccCCchHHhhhceeEEeeeccc--CCceEEEEeceeEec
Confidence 22332 3466665543 3433445566551 21111111 233455667888876
No 179
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=94.17 E-value=0.51 Score=45.27 Aligned_cols=113 Identities=19% Similarity=0.134 Sum_probs=78.5
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEE--eCCEEEEEEeeCCEEEEEeCCCCc
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVTWLQKTGFIYDQNNLN 181 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~--~g~~LyqlTwk~~~v~V~D~~tlk 181 (276)
..-+-||.+..|+....|+| -+-.|+.||.+||+.+++++.... |---+.. .|-.|.+---.++++-++|..+.+
T Consensus 90 sgAVM~l~~~~d~s~i~S~g--tDk~v~~wD~~tG~~~rk~k~h~~-~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~ 166 (338)
T KOG0265|consen 90 SGAVMELHGMRDGSHILSCG--TDKTVRGWDAETGKRIRKHKGHTS-FVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE 166 (338)
T ss_pred cceeEeeeeccCCCEEEEec--CCceEEEEecccceeeehhccccc-eeeecCccccCCeEEEecCCCceEEEEeecccc
Confidence 34447999999988777899 788999999999999999876644 3233333 345777777788999999999988
Q ss_pred EEEEE--ecC-CCCeeEEeeCCCEEEEECC-CceEEEEcCCCCcE
Q 023864 182 KLEEF--THQ-MKDGWGLATDGKVLFGSDG-SSMLYQIDPQTLKV 222 (276)
Q Consensus 182 ~i~~~--~~~-~~EGWGLT~Dg~~L~vSDG-S~~L~viDp~t~~v 222 (276)
.++++ +|+ ..-||+ -++...+ |-| .+.|-++|+.....
T Consensus 167 ~~~t~~~kyqltAv~f~--d~s~qv~-sggIdn~ikvWd~r~~d~ 208 (338)
T KOG0265|consen 167 AIKTFENKYQLTAVGFK--DTSDQVI-SGGIDNDIKVWDLRKNDG 208 (338)
T ss_pred hhhccccceeEEEEEec--cccccee-eccccCceeeeccccCcc
Confidence 88888 555 212332 2233333 334 66777777754443
No 180
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=94.11 E-value=1.2 Score=41.60 Aligned_cols=150 Identities=16% Similarity=0.155 Sum_probs=101.3
Q ss_pred CEEEEEcCCCCCCeEEEEeC----CCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecC--
Q 023864 116 DTLFESTGLYGRSSVRRVAL----ETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-- 189 (276)
Q Consensus 116 g~LyeStG~yg~S~I~~iDl----~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~-- 189 (276)
++.|.. +.|....+..+.. ..|....++.+|...-|-|-.+.++.+|-.-.....+.+||.++..+.++...+
T Consensus 31 ~r~~~~-~~~~~~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~VVynGs~yynk~~t~~ivky~l~~~~~~~~~~lp~a 109 (249)
T KOG3545|consen 31 DRIYVM-NYFDGLMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHVVYNGSLYYNKAGTRNIIKYDLETRTVAGSAALPYA 109 (249)
T ss_pred CceEEe-ccccCceEEEeccHHHhhccCcceEEeCCCCccccceEEEcceEEeeccCCcceEEEEeecceeeeeeecccc
Confidence 455555 4456666666644 345566777899888899999999999999999999999999997766654322
Q ss_pred -----CCCeeE------EeeCCCEEEE---ECCC---ceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEE-E
Q 023864 190 -----MKDGWG------LATDGKVLFG---SDGS---SMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWA-N 251 (276)
Q Consensus 190 -----~~EGWG------LT~Dg~~L~v---SDGS---~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyA-N 251 (276)
.+..|| |+-|..=||+ ++++ -.|..+||.|+++.++..+....+.+. |.=++=|-||| +
T Consensus 110 ~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~skLdp~tl~~e~tW~T~~~k~~~~---~aF~iCGvLY~v~ 186 (249)
T KOG3545|consen 110 GYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLSKLDPETLEVERTWNTTLPKRSAG---NAFMICGVLYVVH 186 (249)
T ss_pred ccCCCcccccCCCccccceecccceeEEecccccCCcEEeeccCHHHhheeeeeccccCCCCcC---ceEEEeeeeEEEe
Confidence 235555 5556665555 5543 345789999999999999987665544 33366677773 3
Q ss_pred eCCCCCeE--EEEeCCCCcE
Q 023864 252 VWQVWPCI--PYAYLQAFGS 269 (276)
Q Consensus 252 vw~s~d~I--~vIDp~T~~v 269 (276)
.....+.. ...|..+++.
T Consensus 187 S~~~~~~~i~yaydt~~~~~ 206 (249)
T KOG3545|consen 187 SYNCTHTQISYAYDTTTGTQ 206 (249)
T ss_pred ccccCCceEEEEEEcCCCce
Confidence 33321333 3677777654
No 181
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.00 E-value=4.1 Score=39.52 Aligned_cols=136 Identities=13% Similarity=0.091 Sum_probs=89.6
Q ss_pred CCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCC-CCcEEEEEecC-CCCeeE-Eee-
Q 023864 123 GLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQN-NLNKLEEFTHQ-MKDGWG-LAT- 198 (276)
Q Consensus 123 G~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~-tlk~i~~~~~~-~~EGWG-LT~- 198 (276)
+.|-.++|-+||-...+.+.+..+-... -++-+..++|.+++ +++++||.-. +++++..|... .|-|.= ++|
T Consensus 70 pky~pNkviIWDD~k~~~i~el~f~~~I--~~V~l~r~riVvvl--~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~ 145 (346)
T KOG2111|consen 70 PKYPPNKVIIWDDLKERCIIELSFNSEI--KAVKLRRDRIVVVL--ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPT 145 (346)
T ss_pred CCCCCceEEEEecccCcEEEEEEeccce--eeEEEcCCeEEEEe--cCeEEEEEcCCChhheeeeecccCCCceEeecCC
Confidence 3477899999996666665555554442 36677889998887 8999999954 88998888765 245411 333
Q ss_pred CCCEEEEECC--CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE----CCEEEEEeCCCCCeEEE-EeCCCCcE
Q 023864 199 DGKVLFGSDG--SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI----KGEVWANVWQVWPCIPY-AYLQAFGS 269 (276)
Q Consensus 199 Dg~~L~vSDG--S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i----dG~lyANvw~s~d~I~v-IDp~T~~v 269 (276)
-.+.+++==| ..+|.+.|.+..+.-....|.- +-+++.++ +|.+.|..-.. .++++ .|+++|+.
T Consensus 146 ~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~A------H~s~Iacv~Ln~~Gt~vATaStk-GTLIRIFdt~~g~~ 216 (346)
T KOG2111|consen 146 SNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINA------HDSDIACVALNLQGTLVATASTK-GTLIRIFDTEDGTL 216 (346)
T ss_pred CCceEEEcCCCccceEEEEEhhhcCcCCceEEEc------ccCceeEEEEcCCccEEEEeccC-cEEEEEEEcCCCcE
Confidence 3456666334 7789999977665522233322 33344444 78899888777 66555 48888653
No 182
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.60 E-value=2.4 Score=40.99 Aligned_cols=128 Identities=16% Similarity=0.194 Sum_probs=85.0
Q ss_pred CCCceEEEEecC---CEEEEEcCCCCCCeEEEEeCCCCcEEEE-----eecCCCceEEEEEEeCCEEEEEEeeC------
Q 023864 104 RAFTQGLLYAEN---DTLFESTGLYGRSSVRRVALETGKVEAI-----NQMEGSYFGEGLTLLGEKLFQVTWLQ------ 169 (276)
Q Consensus 104 ~aFTQGL~~~~d---g~LyeStG~yg~S~I~~iDl~tgkv~~~-----~~l~~~~FgEGit~~g~~LyqlTwk~------ 169 (276)
.+-..||++... ++||.... .+.+|.++|-.=.++.-. -.+|..|=+=+|.-.+++||+.=-+.
T Consensus 137 gavYkGLAi~~~~~~~~LYaadF--~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d 214 (336)
T TIGR03118 137 GNVYKGLAVGPTGGGDYLYAANF--RQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRND 214 (336)
T ss_pred cceeeeeEEeecCCCceEEEecc--CCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccc
Confidence 333489999843 57997644 788999998654433211 12555443347888999999875443
Q ss_pred -------CEEEEEeCCCCcEEEEEecC--CCCeeEEee--C-----CCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCC
Q 023864 170 -------KTGFIYDQNNLNKLEEFTHQ--MKDGWGLAT--D-----GKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKG 232 (276)
Q Consensus 170 -------~~v~V~D~~tlk~i~~~~~~--~~EGWGLT~--D-----g~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g 232 (276)
+-|-+||+ +.+.+++|... ....|||+. - ...|.|.| |+.+|-.+||.+++-+..+.=. +|
T Consensus 215 ~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~-~G 292 (336)
T TIGR03118 215 EVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDP-DN 292 (336)
T ss_pred cccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCC-CC
Confidence 24556774 56777888543 346777653 1 24677778 9999999999999988776543 45
Q ss_pred Eee
Q 023864 233 REV 235 (276)
Q Consensus 233 ~pv 235 (276)
.|+
T Consensus 293 ~pi 295 (336)
T TIGR03118 293 HPV 295 (336)
T ss_pred CeE
Confidence 554
No 183
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=93.42 E-value=8.3 Score=39.59 Aligned_cols=151 Identities=18% Similarity=0.100 Sum_probs=99.4
Q ss_pred cCCCCCceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEE-eeCCEEEEEeCC
Q 023864 101 HDPRAFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVT-WLQKTGFIYDQN 178 (276)
Q Consensus 101 hd~~aFTQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlT-wk~~~v~V~D~~ 178 (276)
|...-+ ||+|.. ++.|+ +|- .+-++++||..+|+-......-. ..+..+.....+.+. -.+++|.|+|..
T Consensus 248 H~g~V~--~l~~~~~~~~lv--sgS-~D~t~rvWd~~sg~C~~~l~gh~---stv~~~~~~~~~~~sgs~D~tVkVW~v~ 319 (537)
T KOG0274|consen 248 HFGGVW--GLAFPSGGDKLV--SGS-TDKTERVWDCSTGECTHSLQGHT---SSVRCLTIDPFLLVSGSRDNTVKVWDVT 319 (537)
T ss_pred CCCCce--eEEEecCCCEEE--EEe-cCCcEEeEecCCCcEEEEecCCC---ceEEEEEccCceEeeccCCceEEEEecc
Confidence 544444 888873 34555 442 46789999999999877655222 234444445555554 578999999999
Q ss_pred CCcEEEEEe-cCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECC-EEEEEeCCCC
Q 023864 179 NLNKLEEFT-HQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG-EVWANVWQVW 256 (276)
Q Consensus 179 tlk~i~~~~-~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG-~lyANvw~s~ 256 (276)
+.+.+..+. +. ..=-.+.-++..++..--+..|-++|+.+++.++++.=. -.+|.-+ +.++ ....+--.+
T Consensus 320 n~~~l~l~~~h~-~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH--~~~V~sl----~~~~~~~~~Sgs~D- 391 (537)
T KOG0274|consen 320 NGACLNLLRGHT-GPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGH--TGRVYSL----IVDSENRLLSGSLD- 391 (537)
T ss_pred CcceEEEecccc-ccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCC--cceEEEE----EecCcceEEeeeec-
Confidence 999999887 32 111125567777777555569999999999998877652 2344443 4455 333344355
Q ss_pred CeEEEEeCCCC
Q 023864 257 PCIPYAYLQAF 267 (276)
Q Consensus 257 d~I~vIDp~T~ 267 (276)
..|-+-|..++
T Consensus 392 ~~IkvWdl~~~ 402 (537)
T KOG0274|consen 392 TTIKVWDLRTK 402 (537)
T ss_pred cceEeecCCch
Confidence 67888888886
No 184
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=93.32 E-value=5.3 Score=37.07 Aligned_cols=120 Identities=16% Similarity=0.126 Sum_probs=67.2
Q ss_pred CCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC--------CE-EEEEEee--------C-CEEEEEeCCC-------Cc
Q 023864 127 RSSVRRVALETGKVEAINQMEGSYFGEGLTLLG--------EK-LFQVTWL--------Q-KTGFIYDQNN-------LN 181 (276)
Q Consensus 127 ~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g--------~~-LyqlTwk--------~-~~v~V~D~~t-------lk 181 (276)
+|.|+.+|+.+.+++.++.+++.-.+..+.... .. +.+-|-. . |++++|+... ++
T Consensus 1 ~s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 1 ASSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp --EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred CcEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 367888888888877777777655555544432 12 2222221 1 6777777665 34
Q ss_pred EEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCc-EEEEEEeeeCCEeeeeeeeeEEECCEEEEEe
Q 023864 182 KLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLK-VIRKDIVRYKGREVRNLNELEFIKGEVWANV 252 (276)
Q Consensus 182 ~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~-vi~~I~V~~~g~pv~~lNELE~idG~lyANv 252 (276)
.+.+.+++ +--.+++.-++.|+++-| ++|++++...-+ +.+.-.... ++ .+..|...+++|++.-
T Consensus 81 ~i~~~~~~-g~V~ai~~~~~~lv~~~g-~~l~v~~l~~~~~l~~~~~~~~---~~-~i~sl~~~~~~I~vgD 146 (321)
T PF03178_consen 81 LIHSTEVK-GPVTAICSFNGRLVVAVG-NKLYVYDLDNSKTLLKKAFYDS---PF-YITSLSVFKNYILVGD 146 (321)
T ss_dssp EEEEEEES-S-EEEEEEETTEEEEEET-TEEEEEEEETTSSEEEEEEE-B---SS-SEEEEEEETTEEEEEE
T ss_pred EEEEEeec-CcceEhhhhCCEEEEeec-CEEEEEEccCcccchhhheecc---eE-EEEEEeccccEEEEEE
Confidence 45555665 456678887888888776 666666655555 333222221 11 4444556666665443
No 185
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.30 E-value=0.62 Score=45.92 Aligned_cols=122 Identities=15% Similarity=0.044 Sum_probs=86.2
Q ss_pred CCceEEEEecC---CEEEEEcCCCCCCeEEEEeCCCC-cEEEEeecCC-CceEEEEEEeCCEEEEEEeeCCEEEEEeCCC
Q 023864 105 AFTQGLLYAEN---DTLFESTGLYGRSSVRRVALETG-KVEAINQMEG-SYFGEGLTLLGEKLFQVTWLQKTGFIYDQNN 179 (276)
Q Consensus 105 aFTQGL~~~~d---g~LyeStG~yg~S~I~~iDl~tg-kv~~~~~l~~-~~FgEGit~~g~~LyqlTwk~~~v~V~D~~t 179 (276)
-|.+++.|.++ .++-..|. -..||.||+..+ +.+.++++.. ..-..|++..++.+|..|.+ +.++.||..+
T Consensus 203 vW~tdi~Fl~g~~~~~fat~T~---~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~-g~l~~FD~r~ 278 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFATITR---YHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTK-GQLAKFDLRG 278 (412)
T ss_pred eeeccceecCCCCCceEEEEec---ceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEeccc-chhheecccC
Confidence 46677877654 24555554 467999999876 4556665554 34567888888999988765 5688899999
Q ss_pred CcEEEEEecC-CCCeeEE-eeCCCEEEEECC-CceEEEEcCCCCcEEEEEEeee
Q 023864 180 LNKLEEFTHQ-MKDGWGL-ATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 180 lk~i~~~~~~-~~EGWGL-T~Dg~~L~vSDG-S~~L~viDp~t~~vi~~I~V~~ 230 (276)
.+.++.+--+ .+--=++ ++++..+..|-| +..|.+.|.+|-+.+.++-|..
T Consensus 279 ~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs 332 (412)
T KOG3881|consen 279 GKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS 332 (412)
T ss_pred ceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc
Confidence 9998874211 1111133 456668888888 8889999999988887777764
No 186
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=93.25 E-value=0.35 Score=47.33 Aligned_cols=127 Identities=18% Similarity=0.159 Sum_probs=79.4
Q ss_pred EEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCc-----EEEEEecCCCCee
Q 023864 120 ESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLN-----KLEEFTHQMKDGW 194 (276)
Q Consensus 120 eStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk-----~i~~~~~~~~EGW 194 (276)
.|+| +...|..+|.+||-. +...--...|+.-.+.. +.|...--+++.+|+||..... ....+-++ =
T Consensus 228 fs~G--~sqqv~L~nvetg~~-qsf~sksDVfAlQf~~s-~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~----S 299 (425)
T KOG2695|consen 228 FSVG--LSQQVLLTNVETGHQ-QSFQSKSDVFALQFAGS-DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHD----S 299 (425)
T ss_pred eccc--ccceeEEEEeecccc-cccccchhHHHHHhccc-CCeeEecccCCcEEEEEeeecccCCCcceEEEEcC----c
Confidence 3577 788888999998832 22222234554433322 4566667789999999987661 22223222 1
Q ss_pred E------EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-------CCEEEEEeCCCCCeEEE
Q 023864 195 G------LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-------KGEVWANVWQVWPCIPY 261 (276)
Q Consensus 195 G------LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-------dG~lyANvw~s~d~I~v 261 (276)
. |-.+++.|.+||-+.+|..+|..-.|-.+.|.-.+ .+.|+.+|. +|.|++ + .+ |+..+
T Consensus 300 svtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe-----GHvN~~a~l~~~v~~eeg~I~s-~-Gd-DcytR 371 (425)
T KOG2695|consen 300 SVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE-----GHVNLSAYLPAHVKEEEGSIFS-V-GD-DCYTR 371 (425)
T ss_pred chhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee-----cccccccccccccccccceEEE-c-cC-eeEEE
Confidence 2 33478999999999999999976544433344333 466777765 455666 4 56 77777
Q ss_pred E
Q 023864 262 A 262 (276)
Q Consensus 262 I 262 (276)
|
T Consensus 372 i 372 (425)
T KOG2695|consen 372 I 372 (425)
T ss_pred E
Confidence 6
No 187
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=93.10 E-value=8.8 Score=37.05 Aligned_cols=167 Identities=13% Similarity=0.164 Sum_probs=101.5
Q ss_pred eeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC--CCceEEEEEEeCCEEEEEEee
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME--GSYFGEGLTLLGEKLFQVTWL 168 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~--~~~FgEGit~~g~~LyqlTwk 168 (276)
..++|.++++- .+.|..--.|.+|++|+-+. |+...-.||.++|+.+.... + ...++-.+...+.+.|+----
T Consensus 133 g~~~v~r~l~g-HtgylScC~f~dD~~ilT~S---GD~TCalWDie~g~~~~~f~-GH~gDV~slsl~p~~~ntFvSg~c 207 (343)
T KOG0286|consen 133 GNVRVSRELAG-HTGYLSCCRFLDDNHILTGS---GDMTCALWDIETGQQTQVFH-GHTGDVMSLSLSPSDGNTFVSGGC 207 (343)
T ss_pred ccceeeeeecC-ccceeEEEEEcCCCceEecC---CCceEEEEEcccceEEEEec-CCcccEEEEecCCCCCCeEEeccc
Confidence 34567778874 58888888998888998443 67899999999998766543 2 234544455446788888888
Q ss_pred CCEEEEEeCCCCcEEEEEecC--CCCeeEEeeCCCEEEE-EC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE
Q 023864 169 QKTGFIYDQNNLNKLEEFTHQ--MKDGWGLATDGKVLFG-SD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (276)
Q Consensus 169 ~~~v~V~D~~tlk~i~~~~~~--~~EGWGLT~Dg~~L~v-SD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i 244 (276)
++...++|.....-.++|+-. --.-.-+-|+|.-+-. || |+-++| |...-+ ++.+......+-.+|-+.+.
T Consensus 208 D~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRly--DlRaD~---~~a~ys~~~~~~gitSv~FS 282 (343)
T KOG0286|consen 208 DKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLY--DLRADQ---ELAVYSHDSIICGITSVAFS 282 (343)
T ss_pred ccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEE--eecCCc---EEeeeccCcccCCceeEEEc
Confidence 999999999999988888621 0012223455554433 44 555554 433332 34443322222334444444
Q ss_pred -CCE-EEEEeCCCCCeEEEEeCCCCcE
Q 023864 245 -KGE-VWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 245 -dG~-lyANvw~s~d~I~vIDp~T~~v 269 (276)
-|+ |||. +.. ..+-|=|.-.++.
T Consensus 283 ~SGRlLfag-y~d-~~c~vWDtlk~e~ 307 (343)
T KOG0286|consen 283 KSGRLLFAG-YDD-FTCNVWDTLKGER 307 (343)
T ss_pred ccccEEEee-ecC-CceeEeeccccce
Confidence 354 5553 333 4555555555443
No 188
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=93.08 E-value=0.75 Score=45.60 Aligned_cols=121 Identities=10% Similarity=0.034 Sum_probs=81.3
Q ss_pred CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe------CCEEEEEEeeCCEEEEEe
Q 023864 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL------GEKLFQVTWLQKTGFIYD 176 (276)
Q Consensus 103 ~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~------g~~LyqlTwk~~~v~V~D 176 (276)
...|++-+.++|||+.+.|.- -+.+|+.||+++|+.+.+.--+..-.=.+|+.. +-+++.-.-++|.+.|+|
T Consensus 156 H~~WVlcvawsPDgk~iASG~--~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd 233 (480)
T KOG0271|consen 156 HKNWVLCVAWSPDGKKIASGS--KDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWD 233 (480)
T ss_pred CccEEEEEEECCCcchhhccc--cCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEE
Confidence 478999999999999887644 788999999999986544322222223345543 246777788999999999
Q ss_pred CCCCcEEEEEecCCCCeeE-EeeCCCEE-EEECCCceEEEEcCCCCcEEEEE
Q 023864 177 QNNLNKLEEFTHQMKDGWG-LATDGKVL-FGSDGSSMLYQIDPQTLKVIRKD 226 (276)
Q Consensus 177 ~~tlk~i~~~~~~~~EGWG-LT~Dg~~L-~vSDGS~~L~viDp~t~~vi~~I 226 (276)
....+.+..+.-- ..... +..-|+-| |-+.-+.+|-+++..+++..+.+
T Consensus 234 ~~~~~~~~~lsgH-T~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~l 284 (480)
T KOG0271|consen 234 TKLGTCVRTLSGH-TASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCREL 284 (480)
T ss_pred ccCceEEEEeccC-ccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhh
Confidence 9888777766411 11111 33445544 44446778888888886655443
No 189
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=93.07 E-value=2.8 Score=41.59 Aligned_cols=33 Identities=18% Similarity=0.386 Sum_probs=28.3
Q ss_pred eEEEEEEecCCCCCceEEEEecCCEEEEEcCCC
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLY 125 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~y 125 (276)
..|+..+|-...-||-=|.|+|||+||+++|.-
T Consensus 165 ~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~ 197 (399)
T COG2133 165 KVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSN 197 (399)
T ss_pred cEEeecCCCCCCcCcccEEECCCCcEEEEeCCC
Confidence 567788886667899999999999999999954
No 190
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=93.00 E-value=3.1 Score=41.11 Aligned_cols=120 Identities=17% Similarity=0.138 Sum_probs=73.0
Q ss_pred ceEEEEec---CCEEEEEcCCCCCCeEEEEeC---CCC----cEEEEeecCCCceEEEEEEeC--CEEEEEEeeCCEEEE
Q 023864 107 TQGLLYAE---NDTLFESTGLYGRSSVRRVAL---ETG----KVEAINQMEGSYFGEGLTLLG--EKLFQVTWLQKTGFI 174 (276)
Q Consensus 107 TQGL~~~~---dg~LyeStG~yg~S~I~~iDl---~tg----kv~~~~~l~~~~FgEGit~~g--~~LyqlTwk~~~v~V 174 (276)
+.||++.. +|.+|.-.+. .+..+..|-+ .+| +++++..++.. .|||.+++ ++||+.- .+.=+..
T Consensus 158 ~yGlcly~~~~~g~~ya~v~~-k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ--~EGCVVDDe~g~LYvgE-E~~GIW~ 233 (381)
T PF02333_consen 158 PYGLCLYRSPSTGALYAFVNG-KDGRVEQYELTDDGDGKVSATLVREFKVGSQ--PEGCVVDDETGRLYVGE-EDVGIWR 233 (381)
T ss_dssp EEEEEEEE-TTT--EEEEEEE-TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTTEEEEEE-TTTEEEE
T ss_pred ceeeEEeecCCCCcEEEEEec-CCceEEEEEEEeCCCCcEeeEEEEEecCCCc--ceEEEEecccCCEEEec-CccEEEE
Confidence 45998853 3666643332 2344666544 344 45788888887 89999997 6999865 4456777
Q ss_pred EeCCC-----CcEEEEEec----CCCCeeEEee--CCC-EEEEEC-CCceEEEEcCCC-CcEEEEEEeee
Q 023864 175 YDQNN-----LNKLEEFTH----QMKDGWGLAT--DGK-VLFGSD-GSSMLYQIDPQT-LKVIRKDIVRY 230 (276)
Q Consensus 175 ~D~~t-----lk~i~~~~~----~~~EGWGLT~--Dg~-~L~vSD-GS~~L~viDp~t-~~vi~~I~V~~ 230 (276)
|+++- .+.+..+.- .--||.+|-+ +|+ +|++|+ |.++..++|.+. .+.+.+..|..
T Consensus 234 y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f~i~~ 303 (381)
T PF02333_consen 234 YDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSFRIGD 303 (381)
T ss_dssp EESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEEEEE-
T ss_pred EecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceEEecc
Confidence 88752 223322211 1248888854 554 799999 899999999764 56777777764
No 191
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=92.99 E-value=8.8 Score=36.73 Aligned_cols=152 Identities=13% Similarity=0.057 Sum_probs=97.7
Q ss_pred EEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC-CCceEEEEEEeCCEEEEEEe-eCCEEEEEeCCCCcEEEEEe
Q 023864 110 LLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVTW-LQKTGFIYDQNNLNKLEEFT 187 (276)
Q Consensus 110 L~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~-~~~FgEGit~~g~~LyqlTw-k~~~v~V~D~~tlk~i~~~~ 187 (276)
+-|..+|-|+-|++ .++...+|=-.+|+.+.+..=- ...| -+.++.+.=+++|= -++++-+||..|.|++.+++
T Consensus 16 iKyN~eGDLlFsca--KD~~~~vw~s~nGerlGty~GHtGavW--~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k 91 (327)
T KOG0643|consen 16 IKYNREGDLLFSCA--KDSTPTVWYSLNGERLGTYDGHTGAVW--CCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK 91 (327)
T ss_pred EEecCCCcEEEEec--CCCCceEEEecCCceeeeecCCCceEE--EEEecCCcceeeeccccceeEEEEcCCCcEEEEee
Confidence 45555677777888 7888888877788876664311 1344 34444554455554 45778999999999999998
Q ss_pred cC-CCCeeEEeeCCCE-EEEEC---C-CceEEEEcCCC-------CcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeC
Q 023864 188 HQ-MKDGWGLATDGKV-LFGSD---G-SSMLYQIDPQT-------LKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVW 253 (276)
Q Consensus 188 ~~-~~EGWGLT~Dg~~-L~vSD---G-S~~L~viDp~t-------~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw 253 (276)
.+ .--+..+..+|.. |+.+| | +..|.++|... -+...+|...+ . .++-+.|- -|+-.+..-
T Consensus 92 ~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~-s----kit~a~Wg~l~~~ii~Gh 166 (327)
T KOG0643|consen 92 TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD-S----KITSALWGPLGETIIAGH 166 (327)
T ss_pred cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc-c----ceeeeeecccCCEEEEec
Confidence 77 2345567778865 56688 4 78999999773 23355565554 1 22222333 233233343
Q ss_pred CCCCeEEEEeCCCCcEEE
Q 023864 254 QVWPCIPYAYLQAFGSSL 271 (276)
Q Consensus 254 ~s~d~I~vIDp~T~~v~l 271 (276)
.+ ..|..-|..+|++.+
T Consensus 167 e~-G~is~~da~~g~~~v 183 (327)
T KOG0643|consen 167 ED-GSISIYDARTGKELV 183 (327)
T ss_pred CC-CcEEEEEcccCceee
Confidence 55 789999999986654
No 192
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=92.96 E-value=2.3 Score=40.62 Aligned_cols=121 Identities=20% Similarity=0.227 Sum_probs=81.4
Q ss_pred EEEEecCCEEEEEcCCCCCCeEEEEeCC--CCcEEEEee--cCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEE
Q 023864 109 GLLYAENDTLFESTGLYGRSSVRRVALE--TGKVEAINQ--MEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLE 184 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~S~I~~iDl~--tgkv~~~~~--l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~ 184 (276)
-+.+++|+++..+.| ....|-+|.++ ...+++... -..+-|...+. .++.+|.+.-+++.+.|||...+...-
T Consensus 163 s~~~snd~~~~~~Vg--ds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s-~~~~~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVG--DSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFS-ENDLQFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred eeEEcCCCceEEEec--CCCcceEEEeCCccceeeeeEecccCCCceeeeec-cCcceEEEEecCCcEEEEEecccccch
Confidence 678899999999999 56666666554 445555222 22344533332 257899999999999999988776442
Q ss_pred E-EecCCCCeeE------EeeCC--CEEEEECCCceEEEEcCCCCcEEEEEEeeeCC
Q 023864 185 E-FTHQMKDGWG------LATDG--KVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKG 232 (276)
Q Consensus 185 ~-~~~~~~EGWG------LT~Dg--~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g 232 (276)
. +.-..+..=| +++-| +.|+.|.+-+.++++|..+++-...|..-++-
T Consensus 240 ~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~ 296 (344)
T KOG4532|consen 240 AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDV 296 (344)
T ss_pred hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccc
Confidence 2 2211112212 44433 68999999999999999999888777765543
No 193
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=92.84 E-value=0.32 Score=49.58 Aligned_cols=142 Identities=12% Similarity=0.150 Sum_probs=94.6
Q ss_pred CCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCC---CceEEEEEEeCCEEEEEEeeCCEEEEEeCC
Q 023864 103 PRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEG---SYFGEGLTLLGEKLFQVTWLQKTGFIYDQN 178 (276)
Q Consensus 103 ~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~---~~FgEGit~~g~~LyqlTwk~~~v~V~D~~ 178 (276)
+..|..---+.+||+ |++ .| ..|.|.+||+++-...-+..++. .-++-.+..+- ++--.---++.+.|||..
T Consensus 464 rdnyiRSckL~pdgrtLiv-GG--eastlsiWDLAapTprikaeltssapaCyALa~spDa-kvcFsccsdGnI~vwDLh 539 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIV-GG--EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLH 539 (705)
T ss_pred cccceeeeEecCCCceEEe-cc--ccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEcc
Confidence 567777777788876 653 45 48999999999876655555663 33444444444 444445568999999999
Q ss_pred CCcEEEEEecCCCCe---eEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCC
Q 023864 179 NLNKLEEFTHQMKDG---WGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQV 255 (276)
Q Consensus 179 tlk~i~~~~~~~~EG---WGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s 255 (276)
+-.++++|+-- ++| .-+.+||..||..-=++.|.-+|..+.+....-.... ++--|-|--..=|+.+.+.
T Consensus 540 nq~~VrqfqGh-tDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~S------QIfSLg~cP~~dWlavGMe 612 (705)
T KOG0639|consen 540 NQTLVRQFQGH-TDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSS------QIFSLGYCPTGDWLAVGME 612 (705)
T ss_pred cceeeecccCC-CCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhh------hheecccCCCccceeeecc
Confidence 99999999722 344 4488999999975449999999988876654444332 2222333333345566655
No 194
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=92.82 E-value=2.9 Score=44.88 Aligned_cols=138 Identities=14% Similarity=0.059 Sum_probs=99.7
Q ss_pred CCCCeEEEEeCCCCcEEEEe---ecCCCceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCCcEEEEEecCC-CCeeEEeeC
Q 023864 125 YGRSSVRRVALETGKVEAIN---QMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQM-KDGWGLATD 199 (276)
Q Consensus 125 yg~S~I~~iDl~tgkv~~~~---~l~~~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~-~EGWGLT~D 199 (276)
|-...|-+|+..+|-...+. +.-+.. -.|+++++ +++-+.+--+|.+-.||-+....++++..+. .-+.-....
T Consensus 467 ~S~G~Id~fNmQSGi~r~sf~~~~ah~~~-V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~ 545 (910)
T KOG1539|consen 467 YSKGTIDRFNMQSGIHRKSFGDSPAHKGE-VTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRV 545 (910)
T ss_pred ccCCeEEEEEcccCeeecccccCccccCc-eeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeeh
Confidence 45678999999999765554 122222 36889988 7899999999999999999999999988651 122222334
Q ss_pred CCEEEEECCCceEEEEcCCCCcEEEEEE-eeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 200 GKVLFGSDGSSMLYQIDPQTLKVIRKDI-VRYKGREVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 200 g~~L~vSDGS~~L~viDp~t~~vi~~I~-V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
-..+.+..+.-.|.++|..|.++++... .++ ++|.|.+. ||+=.+.--++ ..|-+-|.-|+.-+
T Consensus 546 s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~n------ritd~~FS~DgrWlisasmD-~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 546 SDLLAIALDDFSIRVVDVVTRKVVREFWGHGN------RITDMTFSPDGRWLISASMD-STIRTWDLPTGTLI 611 (910)
T ss_pred hhhhhhhcCceeEEEEEchhhhhhHHhhcccc------ceeeeEeCCCCcEEEEeecC-CcEEEEeccCccee
Confidence 4455556678899999999999998765 554 89999987 56522333355 78999999986643
No 195
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=92.74 E-value=3.3 Score=40.95 Aligned_cols=132 Identities=19% Similarity=0.207 Sum_probs=67.7
Q ss_pred eEEEEEEecCC----CCCceEEEEecCC-EEEEEcCCCCCCeEEEEeCCCCcEEEEeecC-CCceEEEEEEeCCEEEEEE
Q 023864 93 IQVVNEFPHDP----RAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVT 166 (276)
Q Consensus 93 ~~Vv~~~Phd~----~aFTQGL~~~~dg-~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~-~~~FgEGit~~g~~LyqlT 166 (276)
.+|++=-|.+. --|+|=-. .+|| +|+-++..-|...+..+|+++++..+-...+ ...||+=++..++.+|- -
T Consensus 21 ~~VtrLT~~~~~~h~~YF~~~~f-t~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Y-v 98 (386)
T PF14583_consen 21 HRVTRLTPPDGHSHRLYFYQNCF-TDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYY-V 98 (386)
T ss_dssp -EEEE-S-TTS-EE---TTS--B--TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEE-E
T ss_pred ceEEEecCCCCcccceeecCCCc-CCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEE-E
Confidence 34554444432 34555433 4466 4443444458899999999999998877765 45777766666677654 2
Q ss_pred eeCCEEEEEeCCCCcEEEEEecCCCCeeE------EeeCCCEEEE-----ECC---C--------------ceEEEEcCC
Q 023864 167 WLQKTGFIYDQNNLNKLEEFTHQMKDGWG------LATDGKVLFG-----SDG---S--------------SMLYQIDPQ 218 (276)
Q Consensus 167 wk~~~v~V~D~~tlk~i~~~~~~~~EGWG------LT~Dg~~L~v-----SDG---S--------------~~L~viDp~ 218 (276)
+.++.+..+|.+|++...-+..+ ++|- +..|+..+.- +|. + .+|..||.+
T Consensus 99 ~~~~~l~~vdL~T~e~~~vy~~p--~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~ 176 (386)
T PF14583_consen 99 KNGRSLRRVDLDTLEERVVYEVP--DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK 176 (386)
T ss_dssp ETTTEEEEEETTT--EEEEEE----TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred ECCCeEEEEECCcCcEEEEEECC--cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence 34679999999999875544443 4443 4456555422 111 1 278999999
Q ss_pred CCcEEEEEEe
Q 023864 219 TLKVIRKDIV 228 (276)
Q Consensus 219 t~~vi~~I~V 228 (276)
|++...-...
T Consensus 177 tG~~~~v~~~ 186 (386)
T PF14583_consen 177 TGERKVVFED 186 (386)
T ss_dssp T--EEEEEEE
T ss_pred CCceeEEEec
Confidence 9876544443
No 196
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=92.67 E-value=1.4 Score=45.03 Aligned_cols=118 Identities=15% Similarity=0.118 Sum_probs=85.6
Q ss_pred EecCCCCCceEEEEecCC-EEEEEcCCCCCCeEEEEeCCCCcEEE----EeecCCCceEEEEEEeCCEEEEEEeeCCEEE
Q 023864 99 FPHDPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEA----INQMEGSYFGEGLTLLGEKLFQVTWLQKTGF 173 (276)
Q Consensus 99 ~Phd~~aFTQGL~~~~dg-~LyeStG~yg~S~I~~iDl~tgkv~~----~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~ 173 (276)
+-||...-+.-|-|++-. .|+.+++ .+..|+.||......+. .+.-|.+ |.-+...|..|++-.-.+.++.
T Consensus 159 f~~~sgqsvRll~ys~skr~lL~~as--d~G~VtlwDv~g~sp~~~~~~~HsAP~~--gicfspsne~l~vsVG~Dkki~ 234 (673)
T KOG4378|consen 159 FTIDSGQSVRLLRYSPSKRFLLSIAS--DKGAVTLWDVQGMSPIFHASEAHSAPCR--GICFSPSNEALLVSVGYDKKIN 234 (673)
T ss_pred eecCCCCeEEEeecccccceeeEeec--cCCeEEEEeccCCCcccchhhhccCCcC--cceecCCccceEEEecccceEE
Confidence 444445555567788764 4777777 78889999997654332 2233433 3334446889999999999999
Q ss_pred EEeCCCCcEEEEEecCCC-CeeEEeeCCCEEEEECCCceEEEEcCCCC
Q 023864 174 IYDQNNLNKLEEFTHQMK-DGWGLATDGKVLFGSDGSSMLYQIDPQTL 220 (276)
Q Consensus 174 V~D~~tlk~i~~~~~~~~-EGWGLT~Dg~~L~vSDGS~~L~viDp~t~ 220 (276)
+||....+...++.|..| --.++.++|.+|.+.+-..+|++.|....
T Consensus 235 ~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 235 IYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred EeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccC
Confidence 999999998888877522 44568889999999887889999996544
No 197
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=92.64 E-value=1.2 Score=43.96 Aligned_cols=148 Identities=11% Similarity=0.053 Sum_probs=93.4
Q ss_pred ceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC-CCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEE-
Q 023864 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLE- 184 (276)
Q Consensus 107 TQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~-~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~- 184 (276)
+-.|.|+ .++++|.- .+|.|++||.+||+.+++.-=- +. --++-+.++ ..+.--+++.+-|+|.++-..+.
T Consensus 240 VLCLqyd--~rviisGS--SDsTvrvWDv~tge~l~tlihHcea--VLhlrf~ng-~mvtcSkDrsiaVWdm~sps~it~ 312 (499)
T KOG0281|consen 240 VLCLQYD--ERVIVSGS--SDSTVRVWDVNTGEPLNTLIHHCEA--VLHLRFSNG-YMVTCSKDRSIAVWDMASPTDITL 312 (499)
T ss_pred EEeeecc--ceEEEecC--CCceEEEEeccCCchhhHHhhhcce--eEEEEEeCC-EEEEecCCceeEEEeccCchHHHH
Confidence 3466675 56777644 7899999999999876543100 11 113333333 23344588999999987654221
Q ss_pred -EEecCCCCeeE-EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCCeEEEE
Q 023864 185 -EFTHQMKDGWG-LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWPCIPYA 262 (276)
Q Consensus 185 -~~~~~~~EGWG-LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d~I~vI 262 (276)
.+-.+...... +..|.+.++-..|+.+|.++|..|.+-++++.-..-|.+.- ..+|++.|.=-.+ |.|-.-
T Consensus 313 rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIACl------QYr~rlvVSGSSD-ntIRlw 385 (499)
T KOG0281|consen 313 RRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACL------QYRDRLVVSGSSD-NTIRLW 385 (499)
T ss_pred HHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccceeh------hccCeEEEecCCC-ceEEEE
Confidence 11111111112 45677755555599999999999999999887766555543 3467777766455 899888
Q ss_pred eCCCCc
Q 023864 263 YLQAFG 268 (276)
Q Consensus 263 Dp~T~~ 268 (276)
|.+.|.
T Consensus 386 di~~G~ 391 (499)
T KOG0281|consen 386 DIECGA 391 (499)
T ss_pred eccccH
Confidence 988864
No 198
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=92.61 E-value=3.3 Score=41.31 Aligned_cols=105 Identities=16% Similarity=0.172 Sum_probs=73.9
Q ss_pred EEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecC
Q 023864 111 LYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ 189 (276)
Q Consensus 111 ~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~ 189 (276)
+++|- ..++.|+| +++.|..||.+||+.+-+..-|...+..-.. .++.+++.|-+++++-|||+.+.+++.+-. .
T Consensus 138 ~wHPtA~NVLlsag--~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn-~dGs~l~TtckDKkvRv~dpr~~~~v~e~~-~ 213 (472)
T KOG0303|consen 138 QWHPTAPNVLLSAG--SDNTVSIWNVGTGEALITLDHPDMVYSMSFN-RDGSLLCTTCKDKKVRVIDPRRGTVVSEGV-A 213 (472)
T ss_pred eecccchhhHhhcc--CCceEEEEeccCCceeeecCCCCeEEEEEec-cCCceeeeecccceeEEEcCCCCcEeeecc-c
Confidence 45654 23455788 8999999999999977777766665533333 356888999999999999999999988762 1
Q ss_pred CCCeeE-----EeeCCCEEEEECC-----CceEEEEcCCCCcE
Q 023864 190 MKDGWG-----LATDGKVLFGSDG-----SSMLYQIDPQTLKV 222 (276)
Q Consensus 190 ~~EGWG-----LT~Dg~~L~vSDG-----S~~L~viDp~t~~v 222 (276)
-||-. +-.+|+ ++|-| ..++..+||+++++
T Consensus 214 -heG~k~~Raifl~~g~--i~tTGfsr~seRq~aLwdp~nl~e 253 (472)
T KOG0303|consen 214 -HEGAKPARAIFLASGK--IFTTGFSRMSERQIALWDPNNLEE 253 (472)
T ss_pred -ccCCCcceeEEeccCc--eeeeccccccccceeccCcccccC
Confidence 24433 223455 34444 34778889998865
No 199
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.57 E-value=4.5 Score=40.83 Aligned_cols=148 Identities=14% Similarity=0.123 Sum_probs=76.6
Q ss_pred cCCEEEEEc-----CCCCCCeEEEEeCCCCcEEEEeecC--CCceEEEEEEeC--CEEEEEEe-----------------
Q 023864 114 ENDTLFEST-----GLYGRSSVRRVALETGKVEAINQME--GSYFGEGLTLLG--EKLFQVTW----------------- 167 (276)
Q Consensus 114 ~dg~LyeSt-----G~yg~S~I~~iDl~tgkv~~~~~l~--~~~FgEGit~~g--~~LyqlTw----------------- 167 (276)
++|.++.|+ | .|...+..+|-+|.++..+-+.+ ...||=.+-..- +.+.---|
T Consensus 139 p~G~imIS~lGd~~G-~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~ 217 (461)
T PF05694_consen 139 PDGRIMISALGDADG-NGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA 217 (461)
T ss_dssp SS--EEEEEEEETTS--S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred CCccEEEEeccCCCC-CCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence 456666553 3 46778999999999998877664 456765555543 45555555
Q ss_pred --eCCEEEEEeCCCCcEEEEEecCCCCeeE-E----e--eCCCEEEEEC-CCceEEEEcC-CCC--cEEEEEEeeeCCEe
Q 023864 168 --LQKTGFIYDQNNLNKLEEFTHQMKDGWG-L----A--TDGKVLFGSD-GSSMLYQIDP-QTL--KVIRKDIVRYKGRE 234 (276)
Q Consensus 168 --k~~~v~V~D~~tlk~i~~~~~~~~EGWG-L----T--~Dg~~L~vSD-GS~~L~viDp-~t~--~vi~~I~V~~~g~p 234 (276)
..+++.++|..+.+.++++..+ .||-. | . |+..+-|+.- -+++|+.+=. +.. +..+-|.|.. .+
T Consensus 218 ~~yG~~l~vWD~~~r~~~Q~idLg-~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~--~~ 294 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTRKLLQTIDLG-EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPA--KK 294 (461)
T ss_dssp H-S--EEEEEETTTTEEEEEEES--TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE----EE
T ss_pred ccccCeEEEEECCCCcEeeEEecC-CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCC--cc
Confidence 4689999999999999999987 46633 2 2 3456777765 5777766643 344 4445566653 22
Q ss_pred ee--eeeee--------------EE--ECCEEEEEeCCCCCeEEEEeCCC
Q 023864 235 VR--NLNEL--------------EF--IKGEVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 235 v~--~lNEL--------------E~--idG~lyANvw~s~d~I~vIDp~T 266 (276)
+. .+-|| -. .|.+||+|+|.. ..|-.-|-..
T Consensus 295 v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~-GdvrqYDISD 343 (461)
T PF05694_consen 295 VEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLH-GDVRQYDISD 343 (461)
T ss_dssp --SS---GGGGGG-EE------EEE-TTS-EEEEEETTT-TEEEEEE-SS
T ss_pred cCcccccccccccccCCCceEeEEEccCCCEEEEEcccC-CcEEEEecCC
Confidence 11 11122 11 256799999999 9999888543
No 200
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=92.55 E-value=3.4 Score=41.62 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=44.5
Q ss_pred CCceeeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCce------EEEEEEeCC
Q 023864 87 SPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYF------GEGLTLLGE 160 (276)
Q Consensus 87 ~~~~~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~F------gEGit~~g~ 160 (276)
.+.-++.+++.+ .=..++ +|+|.|||+||++- .+..+|++++..+++......++.... --||+++.+
T Consensus 16 ~p~~f~~~~va~--GL~~Pw--~maflPDG~llVtE--R~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 16 ASENFDKKVLLS--GLNKPW--ALLWGPDNQLWVTE--RATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCCCcEEEEEEC--CCCCce--EEEEcCCCeEEEEE--ecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence 344456666654 113455 99999999998762 134689999987775433333332111 136777643
Q ss_pred --------EEEEEE
Q 023864 161 --------KLFQVT 166 (276)
Q Consensus 161 --------~LyqlT 166 (276)
.||+..
T Consensus 90 F~~~~~n~~lYvsy 103 (454)
T TIGR03606 90 FMQEKGNPYVYISY 103 (454)
T ss_pred ccccCCCcEEEEEE
Confidence 588864
No 201
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=92.50 E-value=1.4 Score=43.86 Aligned_cols=122 Identities=11% Similarity=0.087 Sum_probs=81.8
Q ss_pred ecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC---CCceEEEEEEeC-CEEEEEEeeCCEEEEE
Q 023864 100 PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME---GSYFGEGLTLLG-EKLFQVTWLQKTGFIY 175 (276)
Q Consensus 100 Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~---~~~FgEGit~~g-~~LyqlTwk~~~v~V~ 175 (276)
-|+..-| ++.|.+||-|..++| -++.=++||+.||+-+-. |. +..| ++++.. +.....-=.++++-|+
T Consensus 301 GHs~~v~--~iaf~~DGSL~~tGG--lD~~~RvWDlRtgr~im~--L~gH~k~I~--~V~fsPNGy~lATgs~Dnt~kVW 372 (459)
T KOG0272|consen 301 GHSKGVF--SIAFQPDGSLAATGG--LDSLGRVWDLRTGRCIMF--LAGHIKEIL--SVAFSPNGYHLATGSSDNTCKVW 372 (459)
T ss_pred ccccccc--eeEecCCCceeeccC--ccchhheeecccCcEEEE--eccccccee--eEeECCCceEEeecCCCCcEEEe
Confidence 4555566 999999999988766 577778999999975432 22 2344 344432 3333333467999999
Q ss_pred eCCCCcEEEEEecCC--CCeeEEeeCCCEEEEECC-CceEEEEcCCCCcEEEEEEee
Q 023864 176 DQNNLNKLEEFTHQM--KDGWGLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVR 229 (276)
Q Consensus 176 D~~tlk~i~~~~~~~--~EGWGLT~Dg~~L~vSDG-S~~L~viDp~t~~vi~~I~V~ 229 (276)
|..-.+.+-++|--. --..-+.++.....+|-+ ++++-++.+.+++.++.+.=.
T Consensus 373 DLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH 429 (459)
T KOG0272|consen 373 DLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH 429 (459)
T ss_pred eecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCC
Confidence 999888888876221 112224455566666664 889999999999887766543
No 202
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=92.48 E-value=8.7 Score=35.65 Aligned_cols=118 Identities=10% Similarity=0.194 Sum_probs=81.6
Q ss_pred eeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCc-EEEEeecCCCceEEEEEEeCCEEEEEEeeC
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGK-VEAINQMEGSYFGEGLTLLGEKLFQVTWLQ 169 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgk-v~~~~~l~~~~FgEGit~~g~~LyqlTwk~ 169 (276)
...+.+.+.+++ .+ +..+.-. +|+|..+.| +.|..|+++..+ +.....++...+...++..++.+++.+-..
T Consensus 77 ~~l~~i~~~~~~-g~-V~ai~~~-~~~lv~~~g----~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~ 149 (321)
T PF03178_consen 77 FKLKLIHSTEVK-GP-VTAICSF-NGRLVVAVG----NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMK 149 (321)
T ss_dssp -EEEEEEEEEES-S--EEEEEEE-TTEEEEEET----TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSS
T ss_pred eEEEEEEEEeec-Cc-ceEhhhh-CCEEEEeec----CEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEccc
Confidence 467788888773 33 3577766 578888877 799999999888 888888888889999999999999999877
Q ss_pred CEEEE-EeCC--CCcEEEEEecCCCCeeE--EeeCCCEEEEECCCceEEEEc
Q 023864 170 KTGFI-YDQN--NLNKLEEFTHQMKDGWG--LATDGKVLFGSDGSSMLYQID 216 (276)
Q Consensus 170 ~~v~V-~D~~--tlk~i~~~~~~~~EGWG--LT~Dg~~L~vSDGS~~L~viD 216 (276)
+..+. ||.. ++.++++=..+ ..... +-.|++.++++|-...|+++.
T Consensus 150 sv~~~~~~~~~~~l~~va~d~~~-~~v~~~~~l~d~~~~i~~D~~gnl~~l~ 200 (321)
T PF03178_consen 150 SVSLLRYDEENNKLILVARDYQP-RWVTAAEFLVDEDTIIVGDKDGNLFVLR 200 (321)
T ss_dssp SEEEEEEETTTE-EEEEEEESS--BEEEEEEEE-SSSEEEEEETTSEEEEEE
T ss_pred CEEEEEEEccCCEEEEEEecCCC-ccEEEEEEecCCcEEEEEcCCCeEEEEE
Confidence 66554 7863 35555542222 11122 222667899999777776654
No 203
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=92.25 E-value=2.7 Score=44.52 Aligned_cols=156 Identities=15% Similarity=0.175 Sum_probs=96.2
Q ss_pred eeEEEEEEecCCCCCceEEEEecC-----CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC-CceEEEEEEeC-CEEEE
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAEN-----DTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTLLG-EKLFQ 164 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~d-----g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~-~~FgEGit~~g-~~Lyq 164 (276)
+++-+.+.|.. .. .+|..+.++ |.++...| |++.++.||.++++...+..-++ .-+--++.... .++..
T Consensus 223 ~~~~l~~lp~y-e~-~E~vv~l~~~~~~~~~~~~TaG--~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~ 298 (775)
T KOG0319|consen 223 QYKKLKTLPLY-ES-LESVVRLREELGGKGEYIITAG--GSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLL 298 (775)
T ss_pred hhhhhheechh-hh-eeeEEEechhcCCcceEEEEec--CCceEEEEecccchhhhhhccCCchhhhcceeccccCceEE
Confidence 44555666652 22 256666655 45667788 89999999999999877765543 11222333333 45555
Q ss_pred EEeeCCEEEEEeCCCCcEEEEEe-cCCCCeeEEe---eCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeee
Q 023864 165 VTWLQKTGFIYDQNNLNKLEEFT-HQMKDGWGLA---TDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNE 240 (276)
Q Consensus 165 lTwk~~~v~V~D~~tlk~i~~~~-~~~~EGWGLT---~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNE 240 (276)
+| -++.+|+||.+++++.+.|- |. .|=.-+. ++..+|.|.--+..|.++|..|..-. |..+ +. .-++-
T Consensus 299 vt-aeQnl~l~d~~~l~i~k~ivG~n-dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~--ii~G---H~-e~vlS 370 (775)
T KOG0319|consen 299 VT-AEQNLFLYDEDELTIVKQIVGYN-DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ--IIPG---HT-EAVLS 370 (775)
T ss_pred EE-ccceEEEEEccccEEehhhcCCc-hhheeeeecCCccceEEEEeCCCceEEEecCCCceE--EEeC---ch-hheee
Confidence 55 47889999999999999884 22 2333444 44478888555777877788876543 3332 10 12333
Q ss_pred eE-EECCEEEEEeCCCCCeEE
Q 023864 241 LE-FIKGEVWANVWQVWPCIP 260 (276)
Q Consensus 241 LE-~idG~lyANvw~s~d~I~ 260 (276)
|. +..|.+.|.+-.+ +.|.
T Consensus 371 L~~~~~g~llat~sKD-~svi 390 (775)
T KOG0319|consen 371 LDVWSSGDLLATGSKD-KSVI 390 (775)
T ss_pred eeecccCcEEEEecCC-ceEE
Confidence 44 5677677777555 5443
No 204
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.13 E-value=5 Score=39.77 Aligned_cols=135 Identities=13% Similarity=0.133 Sum_probs=92.0
Q ss_pred CCeEEEEeCCCCcEEEEe-ecCCC-------ceEEEEEEeC---CEEEEEEeeCCEEEEEeCC-CCcEEEEEecC--CCC
Q 023864 127 RSSVRRVALETGKVEAIN-QMEGS-------YFGEGLTLLG---EKLFQVTWLQKTGFIYDQN-NLNKLEEFTHQ--MKD 192 (276)
Q Consensus 127 ~S~I~~iDl~tgkv~~~~-~l~~~-------~FgEGit~~g---~~LyqlTwk~~~v~V~D~~-tlk~i~~~~~~--~~E 192 (276)
.+-+-.||+++.+.+-+. .+|+. .+-.++.+.. ..-|+.--+-+.+-+||+. ..++..+|++. .--
T Consensus 172 ~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is 251 (412)
T KOG3881|consen 172 INELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPIS 251 (412)
T ss_pred ccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcce
Confidence 478899999998655444 23322 2334555543 3555555678999999986 45688999864 114
Q ss_pred eeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECC-EEEEEeCCCCCeEEEEeCCC
Q 023864 193 GWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG-EVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 193 GWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG-~lyANvw~s~d~I~vIDp~T 266 (276)
..||+++|..+|+.|-...|..+|..+.++... +.+|.. ..+--+.+..+ .+.|.+..+ -.+-+-|.+|
T Consensus 252 ~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~---~~kg~t-Gsirsih~hp~~~~las~GLD-RyvRIhD~kt 321 (412)
T KOG3881|consen 252 STGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC---GLKGIT-GSIRSIHCHPTHPVLASCGLD-RYVRIHDIKT 321 (412)
T ss_pred eeeecCCCcEEEEecccchhheecccCceeecc---ccCCcc-CCcceEEEcCCCceEEeeccc-eeEEEeeccc
Confidence 567999999999999999999999998877543 222210 11222335555 688888777 7777789888
No 205
>PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A.
Probab=91.96 E-value=6.3 Score=37.17 Aligned_cols=135 Identities=18% Similarity=0.096 Sum_probs=72.2
Q ss_pred CCeEEEEeCCCCcEEEEeecCC-------CceEEEEEEeCCEEEEEE-eeCCEEEEEeCCCCcEEEEEecC--CCCeeEE
Q 023864 127 RSSVRRVALETGKVEAINQMEG-------SYFGEGLTLLGEKLFQVT-WLQKTGFIYDQNNLNKLEEFTHQ--MKDGWGL 196 (276)
Q Consensus 127 ~S~I~~iDl~tgkv~~~~~l~~-------~~FgEGit~~g~~LyqlT-wk~~~v~V~D~~tlk~i~~~~~~--~~EGWGL 196 (276)
...|.+||++++++++++++.. +++ |+....|.+|+.+ +....++++| ...+++++++.. ..++|..
T Consensus 66 ~~~i~~~Dl~~~~l~~~i~~ekeGpngi~~~~--~~~~~~Dsi~l~~~~~~~~l~~~n-~~G~~~~~~~~~~~~~~~~~~ 142 (333)
T PF13970_consen 66 SHSIDIYDLDSGKLVKKIPFEKEGPNGIGRPF--GFFQNLDSIFLFNSYAFPKLFLFN-SQGEVLKKIDLEEEDLEFEPS 142 (333)
T ss_dssp --EEEEEETTTTEEEEEEE-BSSSTTB-TT-----EEESSSTTSEEEEGGGTEEEEE--TT--EEEEEE---TTS-----
T ss_pred cceEEEEECCCCceeeeeeeeeECCCCccccc--cceEcCCceEEEecCCcceEEEEc-CCCeEEEEEecccCccccccc
Confidence 4799999999999999997663 333 5555456666666 5778899999 566777777643 1233321
Q ss_pred -----------eeCCCEEEEE---------C---CCceEEEEcCCCCcEEEEEEeee--CCEe--ee--eeeeeE----E
Q 023864 197 -----------ATDGKVLFGS---------D---GSSMLYQIDPQTLKVIRKDIVRY--KGRE--VR--NLNELE----F 243 (276)
Q Consensus 197 -----------T~Dg~~L~vS---------D---GS~~L~viDp~t~~vi~~I~V~~--~g~p--v~--~lNELE----~ 243 (276)
..|+ .+|.+ + ....+.++|+++.++. .+.+.. .-.. +. .....+ +
T Consensus 143 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (333)
T PF13970_consen 143 EFPSFSNSPIFIKDN-KLYFSQPYHYPFNGDFIEKIPVLAIIDLNTKKVK-WLPLPYPDKYQKYNINWDGGMFPSYSYNY 220 (333)
T ss_dssp --BTTTTB--EEETT-EEEEE---SSS--GGGGGGSEEEEEEETTT--EE-EEEEE--S------SSEEE---EEEEEET
T ss_pred ccccccccceEeCCC-eEEEeeecccccccccccCceEEEEEECCCCeEE-EEeCCChHHhhhhccccCcceecceeEEE
Confidence 1233 33442 1 1336789999998774 455421 0000 00 000111 1
Q ss_pred -ECCEEEEEeCCCCCeEEEEeCCCCc
Q 023864 244 -IKGEVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 244 -idG~lyANvw~s~d~I~vIDp~T~~ 268 (276)
.+|+++.+.+.+ +.|.+-| .++.
T Consensus 221 ~~~~~~i~s~~~~-~~iyv~d-~~~~ 244 (333)
T PF13970_consen 221 FKGGKIIISFPAD-SEIYVYD-SNDS 244 (333)
T ss_dssp -TTTEEEEEETT--SEEEEES-SSS-
T ss_pred eeCCEEEEecCCC-ceEEEEC-CCCe
Confidence 378999999999 9999988 6544
No 206
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=91.91 E-value=4.4 Score=39.60 Aligned_cols=143 Identities=8% Similarity=-0.027 Sum_probs=82.4
Q ss_pred ceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCc------EEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCC
Q 023864 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGK------VEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL 180 (276)
Q Consensus 107 TQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgk------v~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tl 180 (276)
+-|+.|+.||+-+.+.- ++-.|+.||++.-. +.+.++++ ++=..-++.+-.-+.+.--.++++.+|-....
T Consensus 89 vt~~~FsSdGK~lat~~--~Dr~Ir~w~~~DF~~~eHr~~R~nve~d-hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~ 165 (420)
T KOG2096|consen 89 VTDVAFSSDGKKLATIS--GDRSIRLWDVRDFENKEHRCIRQNVEYD-HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKK 165 (420)
T ss_pred eeeeEEcCCCceeEEEe--CCceEEEEecchhhhhhhhHhhccccCC-CceEEEECCCcceEEEEEccCCEEEEEEeeec
Confidence 46999999998777666 88999999987532 22233344 33222223222333333346666666653221
Q ss_pred c-----------------EEEEEecCCCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeE
Q 023864 181 N-----------------KLEEFTHQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELE 242 (276)
Q Consensus 181 k-----------------~i~~~~~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE 242 (276)
+ ...+.+ ---+|++.. ...+||- -..+|-.+|.. ++++..|.... .-|-+.
T Consensus 166 ~dG~~~~~~v~~D~~~f~~kh~v~---~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq~L~~idtnq------~~n~~a 234 (420)
T KOG2096|consen 166 TDGSGSHHFVHIDNLEFERKHQVD---IINIGIAGN-AKYIMSASLDTKICLWDLK-GQLLQSIDTNQ------SSNYDA 234 (420)
T ss_pred ccCCCCcccccccccccchhcccc---eEEEeecCC-ceEEEEecCCCcEEEEecC-Cceeeeecccc------ccccce
Confidence 1 111111 123566644 4455655 57789999988 99999998864 111111
Q ss_pred E--ECCEEEEEeCCCCCeEEEEeC
Q 023864 243 F--IKGEVWANVWQVWPCIPYAYL 264 (276)
Q Consensus 243 ~--idG~lyANvw~s~d~I~vIDp 264 (276)
- -||+..|....+ ..|-|-.|
T Consensus 235 avSP~GRFia~~gFT-pDVkVwE~ 257 (420)
T KOG2096|consen 235 AVSPDGRFIAVSGFT-PDVKVWEP 257 (420)
T ss_pred eeCCCCcEEEEecCC-CCceEEEE
Confidence 1 277777777777 66655443
No 207
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=91.91 E-value=14 Score=36.51 Aligned_cols=159 Identities=11% Similarity=0.064 Sum_probs=97.0
Q ss_pred ecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCCEEEEEeCC
Q 023864 100 PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQN 178 (276)
Q Consensus 100 Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~ 178 (276)
.|-...| -+..+|+.+|..+.| |++.-..||..+|....... +-.---.-+.+. ++.+...-=.+++++|++..
T Consensus 62 ~H~~svF--avsl~P~~~l~aTGG--gDD~AflW~~~~ge~~~elt-gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 62 KHTDSVF--AVSLHPNNNLVATGG--GDDLAFLWDISTGEFAGELT-GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred hcCCceE--EEEeCCCCceEEecC--CCceEEEEEccCCcceeEec-CCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 5766777 666688778888766 89999999999998654432 211111222232 34444444589999999999
Q ss_pred CCcEEEEEecCCCCe--eEEe-eCCCEEEEECCCceEEEEcCCCCcEEEEEEeee-CCEeeeeeeeeEEE-CCEEEEEeC
Q 023864 179 NLNKLEEFTHQMKDG--WGLA-TDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY-KGREVRNLNELEFI-KGEVWANVW 253 (276)
Q Consensus 179 tlk~i~~~~~~~~EG--WGLT-~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~-~g~pv~~lNELE~i-dG~lyANvw 253 (276)
+.....++.++. ++ |=-. |-+..|..-+-+..|+.+..... +..+|-. ++.|+. ==|++ ||+--+..+
T Consensus 137 tg~~~~~~~~e~-~dieWl~WHp~a~illAG~~DGsvWmw~ip~~---~~~kv~~Gh~~~ct---~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 137 TGGEQWKLDQEV-EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ---ALCKVMSGHNSPCT---CGEFIPDGKRILTGY 209 (399)
T ss_pred cCceEEEeeccc-CceEEEEecccccEEEeecCCCcEEEEECCCc---ceeeEecCCCCCcc---cccccCCCceEEEEe
Confidence 999988887542 22 2222 34556666444556666665443 2333432 122221 11122 677555555
Q ss_pred CCCCeEEEEeCCCCcEEE
Q 023864 254 QVWPCIPYAYLQAFGSSL 271 (276)
Q Consensus 254 ~s~d~I~vIDp~T~~v~l 271 (276)
.+ ..|.+-||+||++..
T Consensus 210 ~d-gti~~Wn~ktg~p~~ 226 (399)
T KOG0296|consen 210 DD-GTIIVWNPKTGQPLH 226 (399)
T ss_pred cC-ceEEEEecCCCceeE
Confidence 66 899999999987654
No 208
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=91.84 E-value=0.33 Score=38.37 Aligned_cols=45 Identities=16% Similarity=0.290 Sum_probs=34.7
Q ss_pred CCEEEEEeCCCCcE---EEEEecCCCCeeEEeeCCCEEEEEC-CCceEEEE
Q 023864 169 QKTGFIYDQNNLNK---LEEFTHQMKDGWGLATDGKVLFGSD-GSSMLYQI 215 (276)
Q Consensus 169 ~~~v~V~D~~tlk~---i~~~~~~~~EGWGLT~Dg~~L~vSD-GS~~L~vi 215 (276)
+|+++.||++|.+. +..+.++ .|..|++|++.|+++. +..+|..+
T Consensus 36 ~GRll~ydp~t~~~~vl~~~L~fp--NGVals~d~~~vlv~Et~~~Ri~ry 84 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLDGLYFP--NGVALSPDESFVLVAETGRYRILRY 84 (89)
T ss_dssp -EEEEEEETTTTEEEEEEEEESSE--EEEEE-TTSSEEEEEEGGGTEEEEE
T ss_pred CcCEEEEECCCCeEEEehhCCCcc--CeEEEcCCCCEEEEEeccCceEEEE
Confidence 57889999999874 3455554 9999999999999998 67777654
No 209
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.73 E-value=6.7 Score=37.77 Aligned_cols=155 Identities=16% Similarity=0.123 Sum_probs=86.0
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEE--EEeCCCCcEEE---EeecCC----CceEEEEEEe--CC
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVR--RVALETGKVEA---INQMEG----SYFGEGLTLL--GE 160 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~--~iDl~tgkv~~---~~~l~~----~~FgEGit~~--g~ 160 (276)
.-+++.++|.+--.=.+|+++.++|+.-.+.= ....+. .+|.+|+-... +++|+. +-=-||++.+ +.
T Consensus 116 ~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dE--R~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~ 193 (316)
T COG3204 116 EGDLIRTIPLTGFSDPETIEYIGGNQFVIVDE--RDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH 193 (316)
T ss_pred CCceEEEecccccCChhHeEEecCCEEEEEeh--hcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCc
Confidence 34688899976444458999998777655433 444444 45555442211 344542 2223999997 47
Q ss_pred EEEEEEeeC-CEEEEEeCC--CCcE--------EEEEecCCCCeeEEeeC---CCEEEEECCCceEEEEcCCCCcEEEEE
Q 023864 161 KLFQVTWLQ-KTGFIYDQN--NLNK--------LEEFTHQMKDGWGLATD---GKVLFGSDGSSMLYQIDPQTLKVIRKD 226 (276)
Q Consensus 161 ~LyqlTwk~-~~v~V~D~~--tlk~--------i~~~~~~~~EGWGLT~D---g~~L~vSDGS~~L~viDp~t~~vi~~I 226 (276)
+||++-.++ -.+|.++.. .+.. ...+-. .+==||..| +..|+.||-|..|..+|.. +.++..+
T Consensus 194 ~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~--~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~l 270 (316)
T COG3204 194 RLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFV--LDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELL 270 (316)
T ss_pred eEEEEEccCCcEEEEEecCCcccccccccCcccccceEe--eccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeE
Confidence 888887765 345555522 1111 111111 111244444 3345559999999999955 6677777
Q ss_pred EeeeCCE----eeeeeeeeEEE-CCEEEEE
Q 023864 227 IVRYKGR----EVRNLNELEFI-KGEVWAN 251 (276)
Q Consensus 227 ~V~~~g~----pv~~lNELE~i-dG~lyAN 251 (276)
....+.+ -+.+..-+... +|.||+-
T Consensus 271 sL~~g~~gL~~dipqaEGiamDd~g~lYIv 300 (316)
T COG3204 271 SLTKGNHGLSSDIPQAEGIAMDDDGNLYIV 300 (316)
T ss_pred EeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence 7754322 23334333344 3568854
No 210
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=91.45 E-value=1.7 Score=42.18 Aligned_cols=57 Identities=21% Similarity=0.383 Sum_probs=44.1
Q ss_pred CCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEE
Q 023864 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVT 166 (276)
Q Consensus 105 aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlT 166 (276)
+|.++--++ ||+||.+.- |...|..+|+++|+......+|. |.-||++.|+.+++--
T Consensus 203 smPhSPRWh-dgrLwvlds--gtGev~~vD~~~G~~e~Va~vpG--~~rGL~f~G~llvVgm 259 (335)
T TIGR03032 203 SMPHSPRWY-QGKLWLLNS--GRGELGYVDPQAGKFQPVAFLPG--FTRGLAFAGDFAFVGL 259 (335)
T ss_pred cCCcCCcEe-CCeEEEEEC--CCCEEEEEcCCCCcEEEEEECCC--CCcccceeCCEEEEEe
Confidence 344444555 589999866 88999999999999988888987 4568888887777644
No 211
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=91.42 E-value=8.9 Score=38.02 Aligned_cols=117 Identities=13% Similarity=0.060 Sum_probs=73.7
Q ss_pred CceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEE-EEeCCEEEEEEeeCCEEEEEeCCCCcEEE
Q 023864 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGL-TLLGEKLFQVTWLQKTGFIYDQNNLNKLE 184 (276)
Q Consensus 106 FTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGi-t~~g~~LyqlTwk~~~v~V~D~~tlk~i~ 184 (276)
=+++|.++|.-.++.++| .++.+++||..|..-+....=-..+.+.-+ ...+..+|-.. .+.++-.+|....+-..
T Consensus 237 ~V~~L~lhPTldvl~t~g--rDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S-~D~tvrlWDl~agkt~~ 313 (460)
T KOG0285|consen 237 GVYCLDLHPTLDVLVTGG--RDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS-HDSTVRLWDLRAGKTMI 313 (460)
T ss_pred eeEEEeccccceeEEecC--CcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec-CCceEEEeeeccCceeE
Confidence 346888888655666667 789999999999865444321122222222 22355555443 57788889988887776
Q ss_pred EEecCCCCeeEEe-eCCCEEEEECCCceEEEEcCCCCcEEEE
Q 023864 185 EFTHQMKDGWGLA-TDGKVLFGSDGSSMLYQIDPQTLKVIRK 225 (276)
Q Consensus 185 ~~~~~~~EGWGLT-~Dg~~L~vSDGS~~L~viDp~t~~vi~~ 225 (276)
+...-..---+|+ +....+|.|-+.|.+-.++...++....
T Consensus 314 tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~n 355 (460)
T KOG0285|consen 314 TLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQN 355 (460)
T ss_pred eeecccceeeEEecCCchhhhhccCCccceeccCCccchhhc
Confidence 6643212222454 3456889999999998888766655443
No 212
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=91.40 E-value=4.3 Score=40.89 Aligned_cols=153 Identities=11% Similarity=0.026 Sum_probs=98.3
Q ss_pred eEEEEecCCEEEEEcCCCCCCeEEEEeCCC-------CcEEEEeecCCC-----ceEEEEEEeCCEEEEEEeeCCEEEEE
Q 023864 108 QGLLYAENDTLFESTGLYGRSSVRRVALET-------GKVEAINQMEGS-----YFGEGLTLLGEKLFQVTWLQKTGFIY 175 (276)
Q Consensus 108 QGL~~~~dg~LyeStG~yg~S~I~~iDl~t-------gkv~~~~~l~~~-----~FgEGit~~g~~LyqlTwk~~~v~V~ 175 (276)
--|.|++||.++.++| .+..|++|++.+ +.+.....+..+ .+=.|.--.+.+||-+. .++++-+|
T Consensus 127 TcL~fs~dgs~iiTgs--kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS-~D~t~k~w 203 (476)
T KOG0646|consen 127 TCLKFSDDGSHIITGS--KDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS-EDRTIKLW 203 (476)
T ss_pred eEEEEeCCCcEEEecC--CCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEec-CCceEEEE
Confidence 4688999999888888 888999997632 222111112211 11111111345777665 57899999
Q ss_pred eCCCCcEEEEEecC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEE-------------EEEEe--e-eCCEeeeee
Q 023864 176 DQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVI-------------RKDIV--R-YKGREVRNL 238 (276)
Q Consensus 176 D~~tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi-------------~~I~V--~-~~g~pv~~l 238 (276)
|.....++.++.+| ..-...+.|-+...|+......|++.+-.+..-. .++.+ + .++.+|.-|
T Consensus 204 dlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcL 283 (476)
T KOG0646|consen 204 DLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCL 283 (476)
T ss_pred EeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEE
Confidence 99999999998766 3466778888999999777778888885554311 11222 1 122344333
Q ss_pred eeeEE-ECCEEEEEeCCCCCeEEEEeCCCC
Q 023864 239 NELEF-IKGEVWANVWQVWPCIPYAYLQAF 267 (276)
Q Consensus 239 NELE~-idG~lyANvw~s~d~I~vIDp~T~ 267 (276)
++ .||.+.+.=-.+ +.|.+=|+.+.
T Consensus 284 ---ais~DgtlLlSGd~d-g~VcvWdi~S~ 309 (476)
T KOG0646|consen 284 ---AISTDGTLLLSGDED-GKVCVWDIYSK 309 (476)
T ss_pred ---EEecCccEEEeeCCC-CCEEEEecchH
Confidence 33 488888877666 88888888883
No 213
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=91.37 E-value=8 Score=39.76 Aligned_cols=130 Identities=17% Similarity=0.228 Sum_probs=82.0
Q ss_pred ecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCC
Q 023864 100 PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNN 179 (276)
Q Consensus 100 Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~t 179 (276)
-|....| ||+.+|+..+|..+| -.-.++.|+ ..|++-...+... +|.+.++.--...+---++.-+|+|.++
T Consensus 366 gh~delw--gla~hps~~q~~T~g--qdk~v~lW~--~~k~~wt~~~~d~--~~~~~fhpsg~va~Gt~~G~w~V~d~e~ 437 (626)
T KOG2106|consen 366 GHGDELW--GLATHPSKNQLLTCG--QDKHVRLWN--DHKLEWTKIIEDP--AECADFHPSGVVAVGTATGRWFVLDTET 437 (626)
T ss_pred eccccee--eEEcCCChhheeecc--CcceEEEcc--CCceeEEEEecCc--eeEeeccCcceEEEeeccceEEEEeccc
Confidence 3556777 999999888888888 566788888 5566655555544 3333443211555556688888888888
Q ss_pred CcEEEEEecCCCCeeE---EeeCCCEEEEEC--CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE
Q 023864 180 LNKLEEFTHQMKDGWG---LATDGKVLFGSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (276)
Q Consensus 180 lk~i~~~~~~~~EGWG---LT~Dg~~L~vSD--GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i 244 (276)
+.+-++... +|... .++||..|-|.- +.=.||.+|...++..+-=.. .|.|+.+| .|.
T Consensus 438 -~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~--~gs~ithL---DwS 500 (626)
T KOG2106|consen 438 -QDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC--SGSPITHL---DWS 500 (626)
T ss_pred -ceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee--cCceeEEe---eec
Confidence 444455444 34443 678999998854 455677788766655432111 23566554 465
No 214
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=91.31 E-value=4.1 Score=43.45 Aligned_cols=105 Identities=14% Similarity=0.166 Sum_probs=76.0
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEee-----cCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCC
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ-----MEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQN 178 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~-----l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~ 178 (276)
.+-+--|.|+..|..+.|.| -+..|.+||+-...-..+.. +-+..| +.++.+.+.+-+++.+-.||.+
T Consensus 107 K~AVt~l~fd~~G~rlaSGs--kDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F-----~~~~~~lvS~sKDs~iK~WdL~ 179 (888)
T KOG0306|consen 107 KAAVTTLKFDKIGTRLASGS--KDTDIIVWDLVGEEGLFRLRGHKDSITQALF-----LNGDSFLVSVSKDSMIKFWDLE 179 (888)
T ss_pred ccceEEEEEcccCceEeecC--CCccEEEEEeccceeeEEeecchHHHhHHhc-----cCCCeEEEEeccCceEEEEecc
Confidence 44456789998898888877 78889999986543322221 111222 2268999999999999999999
Q ss_pred CCcEEEEEecCCCCeeEEeeCCCEEEEEC--CCceEEEE
Q 023864 179 NLNKLEEFTHQMKDGWGLATDGKVLFGSD--GSSMLYQI 215 (276)
Q Consensus 179 tlk~i~~~~~~~~EGWGLT~Dg~~L~vSD--GS~~L~vi 215 (276)
|.....+.=-..+|=|||+-+++.++..- +.-++|-+
T Consensus 180 tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L 218 (888)
T KOG0306|consen 180 TQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWEL 218 (888)
T ss_pred cceeeeEEecccceEEEEEEecceEEEEecCCceEEEEe
Confidence 99998887433579999999998887744 44455555
No 215
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=91.08 E-value=6.2 Score=39.25 Aligned_cols=138 Identities=17% Similarity=0.080 Sum_probs=78.3
Q ss_pred CCCCeEEEEeCCCCcEEEEeecCCC-ceEEEEEEeCCEEEEEEeeCCE---EEEEeCCCCcEEEEEecC-CCCeeEEeeC
Q 023864 125 YGRSSVRRVALETGKVEAINQMEGS-YFGEGLTLLGEKLFQVTWLQKT---GFIYDQNNLNKLEEFTHQ-MKDGWGLATD 199 (276)
Q Consensus 125 yg~S~I~~iDl~tgkv~~~~~l~~~-~FgEGit~~g~~LyqlTwk~~~---v~V~D~~tlk~i~~~~~~-~~EGWGLT~D 199 (276)
.....+..-|.+ |...+....... .--.....++.++.-+....+. +++.|.++.+...-...+ +.+.-.++||
T Consensus 170 ~~~~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspD 248 (425)
T COG0823 170 PLPYELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPD 248 (425)
T ss_pred CCCceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCC
Confidence 345556666655 544444332211 1112223334454444544444 899999887755444433 2233358999
Q ss_pred CCEEEE-E--CCCceEEEEcCCCCcEEEEEEe--eeCCEeeeeeeeeEEECCE--EEEEeCCCCCeEEEEeCCCCcEE
Q 023864 200 GKVLFG-S--DGSSMLYQIDPQTLKVIRKDIV--RYKGREVRNLNELEFIKGE--VWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 200 g~~L~v-S--DGS~~L~viDp~t~~vi~~I~V--~~~g~pv~~lNELE~idG~--lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
|+.|.+ + ||.-.||++|..+.+..+ +.= +.+..|.... ||+ +|++--.-...|.+.|++...+.
T Consensus 249 G~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~sp------dG~~ivf~Sdr~G~p~I~~~~~~g~~~~ 319 (425)
T COG0823 249 GSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSP------DGSKIVFTSDRGGRPQIYLYDLEGSQVT 319 (425)
T ss_pred CCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCC------CCCEEEEEeCCCCCcceEEECCCCCcee
Confidence 998766 3 389999999998877443 222 1233343322 563 55655443368999999987654
No 216
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.07 E-value=4.1 Score=38.39 Aligned_cols=109 Identities=14% Similarity=0.098 Sum_probs=68.2
Q ss_pred eEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC-CceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEE
Q 023864 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (276)
Q Consensus 108 QGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~-~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~ 186 (276)
.-.-|..||.-...+| .+-.|+-|++..|.++++..=-. ...-..++.+| .=|..---+..+.+||.+|.|++++|
T Consensus 21 ~avryN~dGnY~ltcG--sdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~v~vwDV~TGkv~Rr~ 97 (307)
T KOG0316|consen 21 RAVRYNVDGNYCLTCG--SDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN-SKFASCGGDKAVQVWDVNTGKVDRRF 97 (307)
T ss_pred EEEEEccCCCEEEEcC--CCceEEeecccccceeeeecCCCceeeeccccccc-cccccCCCCceEEEEEcccCeeeeec
Confidence 4556666787777788 78889999999999988764211 11111122223 33333345678889999999999999
Q ss_pred ecCCCCeeEEeeCCC-EEEEECC-CceEEEEcCCC
Q 023864 187 THQMKDGWGLATDGK-VLFGSDG-SSMLYQIDPQT 219 (276)
Q Consensus 187 ~~~~~EGWGLT~Dg~-~L~vSDG-S~~L~viDp~t 219 (276)
.--.++==.+..+.+ .+++|-+ ..++..+|=.+
T Consensus 98 rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS 132 (307)
T KOG0316|consen 98 RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRS 132 (307)
T ss_pred ccccceeeEEEecCcceEEEeccccceeEEEEccc
Confidence 632122223444443 4555554 77888888433
No 217
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.95 E-value=5.6 Score=41.80 Aligned_cols=147 Identities=14% Similarity=0.127 Sum_probs=96.1
Q ss_pred CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCC-ceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCc
Q 023864 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS-YFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLN 181 (276)
Q Consensus 103 ~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~-~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk 181 (276)
+..-..-|+..+.|++++++| -+..|+.||+.|++-+-+.. +.. -.-.=+.-++++=..-+--++++-++|....+
T Consensus 170 ~k~siYSLA~N~t~t~ivsGg--tek~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQr 246 (735)
T KOG0308|consen 170 PKDSIYSLAMNQTGTIIVSGG--TEKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQR 246 (735)
T ss_pred CccceeeeecCCcceEEEecC--cccceEEeccccccceeeee-ccccceEEEEEcCCCCeEeecCCCceEEeeeccccc
Confidence 444446788877789999888 67889999999987444433 211 11111222334445556678999999999999
Q ss_pred EEEEEecCCCCeeEEee--CCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCC
Q 023864 182 KLEEFTHQMKDGWGLAT--DGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQV 255 (276)
Q Consensus 182 ~i~~~~~~~~EGWGLT~--Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s 255 (276)
-+.++.....-=|+|.. +=+++|..|.+..|+.=|..+++. ...+-.+..|+..+- +--.+.-+|+.-|.+
T Consensus 247 Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~--~tlick~daPv~~l~-~~~~~~~~WvtTtds 319 (735)
T KOG0308|consen 247 CLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK--STLICKEDAPVLKLH-LHEHDNSVWVTTTDS 319 (735)
T ss_pred eeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchh--heEeecCCCchhhhh-hccccCCceeeeccc
Confidence 99998765223588754 346788888888999999988733 233333446666442 112244568888765
No 218
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=90.90 E-value=14 Score=37.29 Aligned_cols=139 Identities=15% Similarity=0.135 Sum_probs=95.6
Q ss_pred EEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCce-EEEEEEe-CCEEEEEEeeCCEEEEE
Q 023864 98 EFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYF-GEGLTLL-GEKLFQVTWLQKTGFIY 175 (276)
Q Consensus 98 ~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~F-gEGit~~-g~~LyqlTwk~~~v~V~ 175 (276)
..||+. -+-||..++.|.-+.|+- .+...-..|..+|..+-++.-...-. =-.++++ ++-||.+---++.+-+|
T Consensus 299 ~~~h~~--~V~~ls~h~tgeYllsAs--~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiw 374 (506)
T KOG0289|consen 299 SRPHEE--PVTGLSLHPTGEYLLSAS--NDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIW 374 (506)
T ss_pred cccccc--cceeeeeccCCcEEEEec--CCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEE
Confidence 456743 346999999887666666 77889999999998877765432211 1133444 46777777788999999
Q ss_pred eCCCCcEEEEEecCC--CCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE
Q 023864 176 DQNNLNKLEEFTHQM--KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (276)
Q Consensus 176 D~~tlk~i~~~~~~~--~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i 244 (276)
|..+......|+-.. ---..++-+|.+|.+.--...|..+|....+-.+++...+.. -.|-++++
T Consensus 375 dlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~----~v~s~~fD 441 (506)
T KOG0289|consen 375 DLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK----EVNSLSFD 441 (506)
T ss_pred EcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc----cceeEEEc
Confidence 999999888887431 123447778999988433333999999988888888776521 24555555
No 219
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=90.82 E-value=12 Score=40.56 Aligned_cols=160 Identities=13% Similarity=0.087 Sum_probs=97.4
Q ss_pred EEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCC-cEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEE
Q 023864 96 VNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETG-KVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFI 174 (276)
Q Consensus 96 v~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tg-kv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V 174 (276)
.-+|-| ...+ +++.|+++|..+.++| -+-.|++|+-..- +--..+.. ..-+.-+++...+ .|...-.++.+.+
T Consensus 7 klRyah-t~G~-t~i~~d~~gefi~tcg--sdg~ir~~~~~sd~e~P~ti~~-~g~~v~~ia~~s~-~f~~~s~~~tv~~ 80 (933)
T KOG1274|consen 7 KLRYAH-TGGL-TLICYDPDGEFICTCG--SDGDIRKWKTNSDEEEPETIDI-SGELVSSIACYSN-HFLTGSEQNTVLR 80 (933)
T ss_pred cchhhc-cCce-EEEEEcCCCCEEEEec--CCCceEEeecCCcccCCchhhc-cCceeEEEeeccc-ceEEeeccceEEE
Confidence 334556 4456 7899999987666678 6667888875443 11111111 3344556666665 5666667888888
Q ss_pred EeCCCCc---EEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEE
Q 023864 175 YDQNNLN---KLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWA 250 (276)
Q Consensus 175 ~D~~tlk---~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyA 250 (276)
|...+.+ .|.+|..|+ .-..+..+|+++...--.-.|-+++..+...++...=.+ .|+..+ .|. +|.+.|
T Consensus 81 y~fps~~~~~iL~Rftlp~-r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~--apVl~l---~~~p~~~fLA 154 (933)
T KOG1274|consen 81 YKFPSGEEDTILARFTLPI-RDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD--APVLQL---SYDPKGNFLA 154 (933)
T ss_pred eeCCCCCccceeeeeeccc-eEEEEecCCcEEEeecCceeEEEEeccccchheeecccC--Cceeee---eEcCCCCEEE
Confidence 8876654 678888874 555666777776653224456667766654443332211 233333 244 566666
Q ss_pred EeCCCCCeEEEEeCCCCc
Q 023864 251 NVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 251 Nvw~s~d~I~vIDp~T~~ 268 (276)
..--+ ..|.++|.+++.
T Consensus 155 vss~d-G~v~iw~~~~~~ 171 (933)
T KOG1274|consen 155 VSSCD-GKVQIWDLQDGI 171 (933)
T ss_pred EEecC-ceEEEEEcccch
Confidence 66556 788888888743
No 220
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=90.78 E-value=2.6 Score=41.13 Aligned_cols=150 Identities=21% Similarity=0.261 Sum_probs=90.6
Q ss_pred CCCCceEEEEecCC-EEEEEcCCCCCCeEEEEeC-CCCcEEEEee-cCCCceEE-----EEEEe--CCEEEEEEeeCCEE
Q 023864 103 PRAFTQGLLYAEND-TLFESTGLYGRSSVRRVAL-ETGKVEAINQ-MEGSYFGE-----GLTLL--GEKLFQVTWLQKTG 172 (276)
Q Consensus 103 ~~aFTQGL~~~~dg-~LyeStG~yg~S~I~~iDl-~tgkv~~~~~-l~~~~FgE-----Git~~--g~~LyqlTwk~~~v 172 (276)
..|+ -|.|++|| +|| +| .++.|+++|+ .+|+--.... +-++-||. -+++. +-+.+.+--..+++
T Consensus 159 taAh--sL~Fs~DGeqlf--aG--ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~ 232 (406)
T KOG2919|consen 159 TAAH--SLQFSPDGEQLF--AG--YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRV 232 (406)
T ss_pred hhhe--eEEecCCCCeEe--ec--ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeeccccee
Confidence 3455 79999998 488 67 7899999999 5665322211 11111221 12332 45667776778888
Q ss_pred EEEeCCCCcEEEEEecCCCCeeEEe-----eCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE--
Q 023864 173 FIYDQNNLNKLEEFTHQMKDGWGLA-----TDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-- 244 (276)
Q Consensus 173 ~V~D~~tlk~i~~~~~~~~EGWGLT-----~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-- 244 (276)
=+|.-...+++...- + .|=|+| +||.+||..- -+++|..+|-..-+ -.|..-++.+.+.|+=-+.
T Consensus 233 giy~~~~~~pl~llg-g--h~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~----~pv~~L~rhv~~TNQRI~FDl 305 (406)
T KOG2919|consen 233 GIYNDDGRRPLQLLG-G--HGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR----DPVYALERHVGDTNQRILFDL 305 (406)
T ss_pred eeEecCCCCceeeec-c--cCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc----chhhhhhhhccCccceEEEec
Confidence 888888888877664 2 333444 5999999955 58999999955321 1222223344444443333
Q ss_pred --CCEEEEEeCCCCCeEEEEeCCC
Q 023864 245 --KGEVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 245 --dG~lyANvw~s~d~I~vIDp~T 266 (276)
+|++.|.=-.+ ..|.|-|.++
T Consensus 306 d~~~~~LasG~td-G~V~vwdlk~ 328 (406)
T KOG2919|consen 306 DPKGEILASGDTD-GSVRVWDLKD 328 (406)
T ss_pred CCCCceeeccCCC-ccEEEEecCC
Confidence 35566555444 6677777766
No 221
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=90.57 E-value=14 Score=35.66 Aligned_cols=117 Identities=20% Similarity=0.236 Sum_probs=72.1
Q ss_pred EEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEE---e-CCEEEEEEeeCC
Q 023864 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL---L-GEKLFQVTWLQK 170 (276)
Q Consensus 95 Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~---~-g~~LyqlTwk~~ 170 (276)
....|.|+ .+- --.+|.++.+.|. .| =+..|+++|+.+++... ++.+ .+|+.- . ..-..+..=.++
T Consensus 47 l~~~~~~~-~pl-L~c~F~d~~~~~~-G~--~dg~vr~~Dln~~~~~~---igth--~~~i~ci~~~~~~~~vIsgsWD~ 116 (323)
T KOG1036|consen 47 LKLKFKHG-APL-LDCAFADESTIVT-GG--LDGQVRRYDLNTGNEDQ---IGTH--DEGIRCIEYSYEVGCVISGSWDK 116 (323)
T ss_pred hhhheecC-Cce-eeeeccCCceEEE-ec--cCceEEEEEecCCccee---eccC--CCceEEEEeeccCCeEEEcccCc
Confidence 44445552 222 3456665567774 33 46789999999986432 2322 222222 1 122333444578
Q ss_pred EEEEEeCCCCcEEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcE
Q 023864 171 TGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKV 222 (276)
Q Consensus 171 ~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~v 222 (276)
++-+||+.+-.+.+++..+ +-=+.++--|..|+|.--...+.++|..++..
T Consensus 117 ~ik~wD~R~~~~~~~~d~~-kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~ 167 (323)
T KOG1036|consen 117 TIKFWDPRNKVVVGTFDQG-KKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDE 167 (323)
T ss_pred cEEEEeccccccccccccC-ceEEEEeccCCEEEEeecCceEEEEEcccccc
Confidence 8999999987777777654 33345777889999955567888999877543
No 222
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=90.54 E-value=1.5 Score=43.41 Aligned_cols=102 Identities=18% Similarity=0.255 Sum_probs=49.4
Q ss_pred CEEEEEEeeCCEEEEEeCCCCcEEEEEecC---------CCCeeEEeeCCCE-EEEEC--CCceEEEEcCCCCcEEEEEE
Q 023864 160 EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ---------MKDGWGLATDGKV-LFGSD--GSSMLYQIDPQTLKVIRKDI 227 (276)
Q Consensus 160 ~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~---------~~EGWGLT~Dg~~-L~vSD--GS~~L~viDp~t~~vi~~I~ 227 (276)
++.+.+.|+ .-.|+.|...+.++.-+ ..-+ ++.||+. ||.|| |..+++.+|.+|+++++--.
T Consensus 4 g~~~~~~~~----~~~D~~TG~~VtrLT~~~~~~h~~YF~~~~--ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTd 77 (386)
T PF14583_consen 4 GTTIPLEFK----TWIDPDTGHRVTRLTPPDGHSHRLYFYQNC--FTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTD 77 (386)
T ss_dssp T-EEE--EE----EEE-TTT--EEEE-S-TTS-EE---TTS----B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---
T ss_pred CcEecccee----EEeCCCCCceEEEecCCCCcccceeecCCC--cCCCCCEEEEEeccCCCcceEEEEcccCEEEECcc
Confidence 344555544 46789888888777411 1133 4889965 57787 78999999999998754332
Q ss_pred eeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCcEEEEE
Q 023864 228 VRYKGREVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQAFGSSLVY 273 (276)
Q Consensus 228 V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T~~v~l~~ 273 (276)
-. |.. ..-+.... +..||- ++.. ..+.++|.+|+++..-|
T Consensus 78 g~--g~~--~~g~~~s~~~~~~~Y-v~~~-~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 78 GP--GDN--TFGGFLSPDDRALYY-VKNG-RSLRRVDLDTLEERVVY 118 (386)
T ss_dssp SS---B---TTT-EE-TTSSEEEE-EETT-TEEEEEETTT--EEEEE
T ss_pred CC--CCC--ccceEEecCCCeEEE-EECC-CeEEEEECCcCcEEEEE
Confidence 11 100 00011122 334432 5566 78999999999875544
No 223
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=90.39 E-value=1.3 Score=43.54 Aligned_cols=62 Identities=13% Similarity=0.137 Sum_probs=53.0
Q ss_pred CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEe
Q 023864 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW 167 (276)
Q Consensus 103 ~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTw 167 (276)
...|+.|++|+|.|+.+.|+. ++-+|++||+.+++-....+ +..-|-.-+.++++..|++|=
T Consensus 333 hdnwVr~~af~p~Gkyi~Sca--DDktlrvwdl~~~~cmk~~~-ah~hfvt~lDfh~~~p~VvTG 394 (406)
T KOG0295|consen 333 HDNWVRGVAFSPGGKYILSCA--DDKTLRVWDLKNLQCMKTLE-AHEHFVTSLDFHKTAPYVVTG 394 (406)
T ss_pred ccceeeeeEEcCCCeEEEEEe--cCCcEEEEEeccceeeeccC-CCcceeEEEecCCCCceEEec
Confidence 368999999999999888888 88999999999998777766 445688889999999999883
No 224
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=90.35 E-value=1.3 Score=27.73 Aligned_cols=38 Identities=11% Similarity=0.237 Sum_probs=30.7
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEe
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVA 134 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iD 134 (276)
+.+.++.. .......+.|++++.++.+++ .+..|++||
T Consensus 2 ~~~~~~~~-h~~~i~~i~~~~~~~~~~s~~--~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRG-HSSSINSIAWSPDGNFLASGS--SDGTIRVWD 39 (39)
T ss_dssp EEEEEEES-SSSSEEEEEEETTSSEEEEEE--TTSEEEEEE
T ss_pred eEEEEEcC-CCCcEEEEEEecccccceeeC--CCCEEEEEC
Confidence 46677765 467778999999988888888 788999887
No 225
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.34 E-value=7.2 Score=39.74 Aligned_cols=120 Identities=10% Similarity=0.048 Sum_probs=75.3
Q ss_pred ceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEe-ecCCCceEEEEEEeCCEEEEEE--eeCCEEEEEeCCCCcEE
Q 023864 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN-QMEGSYFGEGLTLLGEKLFQVT--WLQKTGFIYDQNNLNKL 183 (276)
Q Consensus 107 TQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~-~l~~~~FgEGit~~g~~LyqlT--wk~~~v~V~D~~tlk~i 183 (276)
+=||.+++|+..++|.| .++.+.+||..+-....++ ..-...-+-....+-.-|-..- -.++.+-.+|..+.+.+
T Consensus 304 VCgLkws~d~~~lASGg--nDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i 381 (484)
T KOG0305|consen 304 VCGLKWSPDGNQLASGG--NDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI 381 (484)
T ss_pred eeeeEECCCCCeeccCC--CccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe
Confidence 35999999999999999 8999999999433322221 1111111111111111111110 14677788999999999
Q ss_pred EEEecCCCCeeEEee--CCCEEEEECC--CceEEEEcCCCCcEEEEEEee
Q 023864 184 EEFTHQMKDGWGLAT--DGKVLFGSDG--SSMLYQIDPQTLKVIRKDIVR 229 (276)
Q Consensus 184 ~~~~~~~~EGWGLT~--Dg~~L~vSDG--S~~L~viDp~t~~vi~~I~V~ 229 (276)
..+.+. .+=..|.. ..+.|..+=| .+.|.+++-.+++.+..+...
T Consensus 382 ~~vdtg-sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH 430 (484)
T KOG0305|consen 382 DSVDTG-SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH 430 (484)
T ss_pred cccccC-CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC
Confidence 999875 23344554 4566888776 778999998888776655443
No 226
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=89.82 E-value=13 Score=38.25 Aligned_cols=174 Identities=9% Similarity=0.049 Sum_probs=112.2
Q ss_pred eEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEE--EEeCCEEEEEEeeCC
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGL--TLLGEKLFQVTWLQK 170 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGi--t~~g~~LyqlTwk~~ 170 (276)
.+.+..++.|++.=+-|+.|...+.-+. ++. ....|.+-.+.|+.-......|.+----=+ ......|....-.+|
T Consensus 110 ~kl~hr~lkdh~stvt~v~YN~~DeyiA-svs-~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G 187 (673)
T KOG4378|consen 110 AKLIHRFLKDHQSTVTYVDYNNTDEYIA-SVS-DGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKG 187 (673)
T ss_pred HHHHhhhccCCcceeEEEEecCCcceeE-Eec-cCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCC
Confidence 3566777878887778888865444333 332 223455666666653333333321110001 112356667777889
Q ss_pred EEEEEeCCCCcEEEEEe----cCCCCeeEEeeCCCEEEEECC-CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-
Q 023864 171 TGFIYDQNNLNKLEEFT----HQMKDGWGLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI- 244 (276)
Q Consensus 171 ~v~V~D~~tlk~i~~~~----~~~~EGWGLT~Dg~~L~vSDG-S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i- 244 (276)
.|.+||.+...++-.+. .| ..|.-++|-...|++|=| +.+|+.+|....+...++.-. +|+..+ .+-
T Consensus 188 ~VtlwDv~g~sp~~~~~~~HsAP-~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~---~Plstv---af~~ 260 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEAHSAP-CRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS---HPLSTV---AFSE 260 (673)
T ss_pred eEEEEeccCCCcccchhhhccCC-cCcceecCCccceEEEecccceEEEeecccccccceeeec---CCccee---eecC
Confidence 99999999999887664 23 467778999999999998 889999999887777776554 344432 333
Q ss_pred CCEEEEEeCCCCCeEEEEeCCCCcEEEEEEeC
Q 023864 245 KGEVWANVWQVWPCIPYAYLQAFGSSLVYVTA 276 (276)
Q Consensus 245 dG~lyANvw~s~d~I~vIDp~T~~v~l~~~~~ 276 (276)
+|++.+.=-.. .+|+.-|....+..++.++|
T Consensus 261 ~G~~L~aG~s~-G~~i~YD~R~~k~Pv~v~sa 291 (673)
T KOG4378|consen 261 CGTYLCAGNSK-GELIAYDMRSTKAPVAVRSA 291 (673)
T ss_pred CceEEEeecCC-ceEEEEecccCCCCceEeee
Confidence 56644433244 78888888887777777664
No 227
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.49 E-value=1.9 Score=42.71 Aligned_cols=149 Identities=16% Similarity=0.097 Sum_probs=84.1
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEe-ecCCCceEEEEEEe----CCEEEEEEe--eCCEEEEEe
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN-QMEGSYFGEGLTLL----GEKLFQVTW--LQKTGFIYD 176 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~-~l~~~~FgEGit~~----g~~LyqlTw--k~~~v~V~D 176 (276)
++=+.-|.|++||+++.+.| ++ +.++||.++|.-+++. +.++.+-=+-+-+. ++.||.++. ..+.+-.+|
T Consensus 186 ~~eV~DL~FS~dgk~lasig--~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~ 262 (398)
T KOG0771|consen 186 HAEVKDLDFSPDGKFLASIG--AD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCD 262 (398)
T ss_pred cCccccceeCCCCcEEEEec--CC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEE
Confidence 45567899999999988887 55 9999999999433332 23322211111111 134444444 444555555
Q ss_pred CCCCc---------EEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECC-
Q 023864 177 QNNLN---------KLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG- 246 (276)
Q Consensus 177 ~~tlk---------~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG- 246 (276)
....+ ++..+.. ---..+..||+.+-+.--++.|.++|..+++...-++=- .+. .+.+|++.-.
T Consensus 263 ~~~w~~~~~l~~~~~~~~~~s--iSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~a-H~~---~VT~ltF~Pds 336 (398)
T KOG0771|consen 263 ISLWSGSNFLRLRKKIKRFKS--ISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEA-HLG---FVTGLTFSPDS 336 (398)
T ss_pred eeeeccccccchhhhhhccCc--ceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhh-hee---eeeeEEEcCCc
Confidence 43332 2222210 122357789999988555889999999988776444211 111 4556776643
Q ss_pred EEEEEeCCCCCeEEEE
Q 023864 247 EVWANVWQVWPCIPYA 262 (276)
Q Consensus 247 ~lyANvw~s~d~I~vI 262 (276)
+--+.+-.. +.+.++
T Consensus 337 r~~~svSs~-~~~~v~ 351 (398)
T KOG0771|consen 337 RYLASVSSD-NEAAVT 351 (398)
T ss_pred CcccccccC-CceeEE
Confidence 233445444 544443
No 228
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=89.47 E-value=0.87 Score=29.76 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=23.7
Q ss_pred EEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCC
Q 023864 140 VEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNN 179 (276)
Q Consensus 140 v~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~t 179 (276)
++=+.+++. ++-.++++.++++|+.+. ++.++.+|++|
T Consensus 3 ~~W~~~~~~-~~~~~~~v~~g~vyv~~~-dg~l~ald~~t 40 (40)
T PF13570_consen 3 VLWSYDTGG-PIWSSPAVAGGRVYVGTG-DGNLYALDAAT 40 (40)
T ss_dssp EEEEEE-SS----S--EECTSEEEEE-T-TSEEEEEETT-
T ss_pred eeEEEECCC-CcCcCCEEECCEEEEEcC-CCEEEEEeCCC
Confidence 333445554 344567889999999998 89999999875
No 229
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=89.46 E-value=7 Score=39.29 Aligned_cols=138 Identities=14% Similarity=0.059 Sum_probs=89.5
Q ss_pred eEEEEeCCCCcEE---EEeecCCCceEEEEEEeCCEEEEEEeeCC------EEEEEeCCCCcEE--EEEec-C-CCCeeE
Q 023864 129 SVRRVALETGKVE---AINQMEGSYFGEGLTLLGEKLFQVTWLQK------TGFIYDQNNLNKL--EEFTH-Q-MKDGWG 195 (276)
Q Consensus 129 ~I~~iDl~tgkv~---~~~~l~~~~FgEGit~~g~~LyqlTwk~~------~v~V~D~~tlk~i--~~~~~-~-~~EGWG 195 (276)
.|.++|+++..-. .+...|....|--++..+++||+.-=.+. .+..||..|.+.. ..+.- | ...|-.
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs 168 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHS 168 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccce
Confidence 4888998874332 23345555566777788899999987774 8999998877643 23322 2 246777
Q ss_pred EeeCCCEEEEECC-------CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEE------EeCCCCCeEEEE
Q 023864 196 LATDGKVLFGSDG-------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWA------NVWQVWPCIPYA 262 (276)
Q Consensus 196 LT~Dg~~L~vSDG-------S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyA------Nvw~s~d~I~vI 262 (276)
++..|+.|||-=| .+.|+++|++|.+-.+-...+....|.. ---|..+++++|+ ..-.. +.+..+
T Consensus 169 ~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~-gH~~~~~~~~~~v~gG~~~~~~~l-~D~~~l 246 (482)
T KOG0379|consen 169 ATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRY-GHAMVVVGNKLLVFGGGDDGDVYL-NDVHIL 246 (482)
T ss_pred EEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCC-CceEEEECCeEEEEeccccCCcee-cceEee
Confidence 8888999999433 6789999999999654444443222111 1123455666555 33345 678888
Q ss_pred eCCCCc
Q 023864 263 YLQAFG 268 (276)
Q Consensus 263 Dp~T~~ 268 (276)
|..|.+
T Consensus 247 dl~~~~ 252 (482)
T KOG0379|consen 247 DLSTWE 252 (482)
T ss_pred ecccce
Confidence 888743
No 230
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=89.32 E-value=5.2 Score=39.22 Aligned_cols=122 Identities=19% Similarity=0.211 Sum_probs=83.2
Q ss_pred CCCceE---EEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEE-eCCEEEEEEeeCCEEEEEeCCC
Q 023864 104 RAFTQG---LLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL-LGEKLFQVTWLQKTGFIYDQNN 179 (276)
Q Consensus 104 ~aFTQG---L~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~-~g~~LyqlTwk~~~v~V~D~~t 179 (276)
.|-|+| |.|+.|+.-..|++ -+-.++.--+.+||.+....=-..|.-|..-- +|.++. ..--++++-||+.+|
T Consensus 303 rAHtkGvt~l~FSrD~SqiLS~s--fD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~ii-saSsDgtvkvW~~Kt 379 (508)
T KOG0275|consen 303 RAHTKGVTCLSFSRDNSQILSAS--FDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHII-SASSDGTVKVWHGKT 379 (508)
T ss_pred hhhccCeeEEEEccCcchhhccc--ccceEEEeccccchhHHHhcCccccccceEEcCCCCeEE-EecCCccEEEecCcc
Confidence 455566 56888875445666 56678888899999876654333444343222 334443 344689999999999
Q ss_pred CcEEEEEecCCCCeeEE------eeCCCEEEEECCCceEEEEcCCCCcEEEEEEeee
Q 023864 180 LNKLEEFTHQMKDGWGL------ATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 180 lk~i~~~~~~~~EGWGL------T~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~ 230 (276)
-+-+.+|... ++-+.+ -.+-.+++|-|.+++|++++-+ +++++...-+.
T Consensus 380 teC~~Tfk~~-~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGk 434 (508)
T KOG0275|consen 380 TECLSTFKPL-GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGK 434 (508)
T ss_pred hhhhhhccCC-CCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCC
Confidence 9999998754 333332 1245688899999999999966 88888887764
No 231
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=89.10 E-value=4.2 Score=40.10 Aligned_cols=60 Identities=20% Similarity=0.217 Sum_probs=46.3
Q ss_pred CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEEC-CEEEE
Q 023864 190 MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK-GEVWA 250 (276)
Q Consensus 190 ~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~id-G~lyA 250 (276)
.|=|..+...|..||++|+==-|+++||+..+ ...+....+|+|+..+|.|..++ |.||-
T Consensus 116 RPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~-a~~l~~~~~G~~~kf~N~ldI~~~g~vyF 176 (376)
T KOG1520|consen 116 RPLGIRFDKKGGDLYVADAYLGLLKVGPEGGL-AELLADEAEGKPFKFLNDLDIDPEGVVYF 176 (376)
T ss_pred CcceEEeccCCCeEEEEecceeeEEECCCCCc-ceeccccccCeeeeecCceeEcCCCeEEE
Confidence 34566666677799999998899999999876 34455566999999999999874 44553
No 232
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=89.01 E-value=8.5 Score=38.71 Aligned_cols=61 Identities=26% Similarity=0.299 Sum_probs=38.9
Q ss_pred eeCCEEEEEeCCCCcEEEEEecCC--CCeeE---EeeCCCEEEE----ECC-CceEEEEcCCCCcEEEEEEe
Q 023864 167 WLQKTGFIYDQNNLNKLEEFTHQM--KDGWG---LATDGKVLFG----SDG-SSMLYQIDPQTLKVIRKDIV 228 (276)
Q Consensus 167 wk~~~v~V~D~~tlk~i~~~~~~~--~EGWG---LT~Dg~~L~v----SDG-S~~L~viDp~t~~vi~~I~V 228 (276)
+..++..|+|..+.+...--..|. ..+++ +..+|+ .|+ .|| ...||.|||+|.+.++=++|
T Consensus 364 ~~~~~laI~d~~~kt~t~V~glP~~~is~~~~~~~ve~G~-aYi~Vtt~~g~~~~IY~iDp~TatAtKGl~V 434 (435)
T PF14298_consen 364 SDAKKLAIFDVSNKTFTWVTGLPADLISGFGNAPYVENGK-AYIPVTTEDGSDPYIYKIDPATATATKGLKV 434 (435)
T ss_pred CccceEEEEEccCceeEEeccCChhhccccccceEeeCCE-EEEEEeecCCCceeEEEEcCcccccccceEe
Confidence 345677888887655443333332 24555 455554 433 457 58999999999998876665
No 233
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=88.94 E-value=1.4 Score=28.80 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=23.0
Q ss_pred EEEEEecCCCCee-EEeeCCCEEEEECCCceEEEEcCCC
Q 023864 182 KLEEFTHQMKDGW-GLATDGKVLFGSDGSSMLYQIDPQT 219 (276)
Q Consensus 182 ~i~~~~~~~~EGW-GLT~Dg~~L~vSDGS~~L~viDp~t 219 (276)
++-+++.+ .+-+ +++-+++.+|+.+...+|+.+|++|
T Consensus 3 ~~W~~~~~-~~~~~~~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 3 VLWSYDTG-GPIWSSPAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp EEEEEE-S-S---S--EECTSEEEEE-TTSEEEEEETT-
T ss_pred eeEEEECC-CCcCcCCEEECCEEEEEcCCCEEEEEeCCC
Confidence 44445544 1222 3667889999999999999999986
No 234
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=88.85 E-value=19 Score=35.63 Aligned_cols=140 Identities=12% Similarity=0.082 Sum_probs=90.9
Q ss_pred CEEEEEcCCCCCCeEEEEeCCCCcEEEEee-cCCCceEE-EEEEeCCEEE---EEEeeCCEEEEEeCCCCcEEEEEecC-
Q 023864 116 DTLFESTGLYGRSSVRRVALETGKVEAINQ-MEGSYFGE-GLTLLGEKLF---QVTWLQKTGFIYDQNNLNKLEEFTHQ- 189 (276)
Q Consensus 116 g~LyeStG~yg~S~I~~iDl~tgkv~~~~~-l~~~~FgE-Git~~g~~Ly---qlTwk~~~v~V~D~~tlk~i~~~~~~- 189 (276)
.+|.+. + +++|.+||+.++|+++++. .|+++.|- .++..++.-| =-.-..+.|.+||..+++..-+|+.-
T Consensus 98 ~RLvV~--L--ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~ 173 (391)
T KOG2110|consen 98 KRLVVC--L--EESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHK 173 (391)
T ss_pred ceEEEE--E--cccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecC
Confidence 577765 2 3459999999999999984 55777632 2233333223 23335799999999999999999732
Q ss_pred -CCCeeEEeeCCCEEEE-ECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeEEEEe
Q 023864 190 -MKDGWGLATDGKVLFG-SDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVWPCIPYAY 263 (276)
Q Consensus 190 -~~EGWGLT~Dg~~L~v-SDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I~vID 263 (276)
.=...++.+||..|-- ||-.--|.|++..+++.+.+..=|. .++ ++=-|.+. ++...+..-.+ +.|-+.-
T Consensus 174 ~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~--~~~-~IySL~Fs~ds~~L~~sS~T-eTVHiFK 246 (391)
T KOG2110|consen 174 GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT--YPV-SIYSLSFSPDSQFLAASSNT-ETVHIFK 246 (391)
T ss_pred CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc--eee-EEEEEEECCCCCeEEEecCC-CeEEEEE
Confidence 1134457789988765 6656678888888887765544332 332 45555666 44555666666 6655543
No 235
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=88.78 E-value=4.3 Score=40.63 Aligned_cols=128 Identities=12% Similarity=0.074 Sum_probs=88.0
Q ss_pred EEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEee-cCCCceEEEEEEe-CCEEEEEEeeCCEEE
Q 023864 96 VNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ-MEGSYFGEGLTLL-GEKLFQVTWLQKTGF 173 (276)
Q Consensus 96 v~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~-l~~~~FgEGit~~-g~~LyqlTwk~~~v~ 173 (276)
++++-+ ..+-+--..|+|+|+.+.++- -+++-+.||++|++-+..+. =....| +|++. ++-|...-=.+..+-
T Consensus 254 l~~l~g-H~~RVs~VafHPsG~~L~Tas--fD~tWRlWD~~tk~ElL~QEGHs~~v~--~iaf~~DGSL~~tGGlD~~~R 328 (459)
T KOG0272|consen 254 LQDLEG-HLARVSRVAFHPSGKFLGTAS--FDSTWRLWDLETKSELLLQEGHSKGVF--SIAFQPDGSLAATGGLDSLGR 328 (459)
T ss_pred hhhhhc-chhhheeeeecCCCceeeecc--cccchhhcccccchhhHhhcccccccc--eeEecCCCceeeccCccchhh
Confidence 444433 235556778999999876544 67789999999986433322 113455 45554 346666666788889
Q ss_pred EEeCCCCcEEEEEecCCC--CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEe
Q 023864 174 IYDQNNLNKLEEFTHQMK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIV 228 (276)
Q Consensus 174 V~D~~tlk~i~~~~~~~~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V 228 (276)
|+|..|++.+=.+.--.+ .+..+.|+|..|-..-++++.-++|..--+.+-+|.-
T Consensus 329 vWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipA 385 (459)
T KOG0272|consen 329 VWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPA 385 (459)
T ss_pred eeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceeccc
Confidence 999999998877642222 4555788998888777899999999887766666654
No 236
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=88.75 E-value=9.7 Score=40.29 Aligned_cols=115 Identities=20% Similarity=0.317 Sum_probs=79.8
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEE-EeCCEEEEEEeeCCEE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLT-LLGEKLFQVTWLQKTG 172 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit-~~g~~LyqlTwk~~~v 172 (276)
+.++++.- ....+.||++-+++.+ .|++ .+..|+.||+ +|+++.+.. +..-|-=-++ ..++.+.+.|=.++++
T Consensus 170 ~~l~tf~g-HtD~VRgL~vl~~~~f-lScs--NDg~Ir~w~~-~ge~l~~~~-ghtn~vYsis~~~~~~~Ivs~gEDrtl 243 (745)
T KOG0301|consen 170 TLLKTFSG-HTDCVRGLAVLDDSHF-LSCS--NDGSIRLWDL-DGEVLLEMH-GHTNFVYSISMALSDGLIVSTGEDRTL 243 (745)
T ss_pred chhhhhcc-chhheeeeEEecCCCe-Eeec--CCceEEEEec-cCceeeeee-ccceEEEEEEecCCCCeEEEecCCceE
Confidence 45566653 4677799999975455 4788 7889999999 666655532 3333444566 5689999999999999
Q ss_pred EEEeCCCCcEEEEEecCCCCeeEEee--CCCEEEE-ECCCceEEEEc
Q 023864 173 FIYDQNNLNKLEEFTHQMKDGWGLAT--DGKVLFG-SDGSSMLYQID 216 (276)
Q Consensus 173 ~V~D~~tlk~i~~~~~~~~EGWGLT~--Dg~~L~v-SDGS~~L~viD 216 (276)
-+|+.. +..+.|..|..-=|..+- +|+.... |||-=+|+-.|
T Consensus 244 riW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 244 RIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 999988 777778877557788653 4444433 66644444444
No 237
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=88.72 E-value=2.7 Score=43.12 Aligned_cols=115 Identities=16% Similarity=0.213 Sum_probs=73.4
Q ss_pred ecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcE--EEEeecCCCceEEEEEEeC-CEEEEEE------eeCC
Q 023864 100 PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKV--EAINQMEGSYFGEGLTLLG-EKLFQVT------WLQK 170 (276)
Q Consensus 100 Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv--~~~~~l~~~~FgEGit~~g-~~LyqlT------wk~~ 170 (276)
.|++..=+--+.|+.||+.+.|-| +++.+.+||+.+-+- ....-|+..+=+.-+.+.. ++|.+.- -..+
T Consensus 360 AH~~g~~Itsi~FS~dg~~LlSRg--~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g 437 (641)
T KOG0772|consen 360 AHLPGQDITSISFSYDGNYLLSRG--FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAG 437 (641)
T ss_pred ccCCCCceeEEEeccccchhhhcc--CCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCc
Confidence 377777778899999999888888 899999999998652 2223344332233344443 4444332 2457
Q ss_pred EEEEEeCCCCcEEEEEecCCCCeeEEe---eCCCEEEEEC--CCceEEEEcCC
Q 023864 171 TGFIYDQNNLNKLEEFTHQMKDGWGLA---TDGKVLFGSD--GSSMLYQIDPQ 218 (276)
Q Consensus 171 ~v~V~D~~tlk~i~~~~~~~~EGWGLT---~Dg~~L~vSD--GS~~L~viDp~ 218 (276)
++++||+.||+.+.++.+.. -..--| +-=..++++- |...||+ ||.
T Consensus 438 ~L~f~d~~t~d~v~ki~i~~-aSvv~~~WhpkLNQi~~gsgdG~~~vyY-dp~ 488 (641)
T KOG0772|consen 438 TLFFFDRMTLDTVYKIDIST-ASVVRCLWHPKLNQIFAGSGDGTAHVYY-DPN 488 (641)
T ss_pred eEEEEeccceeeEEEecCCC-ceEEEEeecchhhheeeecCCCceEEEE-Ccc
Confidence 89999999999999998861 222212 1123566644 5555553 665
No 238
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=88.60 E-value=4.4 Score=42.83 Aligned_cols=108 Identities=16% Similarity=0.117 Sum_probs=73.7
Q ss_pred EEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCCcEEEEEe
Q 023864 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLEEFT 187 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tlk~i~~~~ 187 (276)
-..|+|+ .=|..||- -+-.||.||.-+|..++.. .+..-=-+.+++.. ++--..-=.++.+.+||..+.+.++++.
T Consensus 540 cv~FHPN-s~Y~aTGS-sD~tVRlWDv~~G~~VRiF-~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~ 616 (707)
T KOG0263|consen 540 CVSFHPN-SNYVATGS-SDRTVRLWDVSTGNSVRIF-TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK 616 (707)
T ss_pred eEEECCc-ccccccCC-CCceEEEEEcCCCcEEEEe-cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh
Confidence 3678885 44455772 4567999999999875543 34322235566654 4444444578999999999999888875
Q ss_pred cCCCCeeE--EeeCCCEEEEECCCceEEEEcCCC
Q 023864 188 HQMKDGWG--LATDGKVLFGSDGSSMLYQIDPQT 219 (276)
Q Consensus 188 ~~~~EGWG--LT~Dg~~L~vSDGS~~L~viDp~t 219 (276)
-..+-+.. ++.||..|.+.-+.++|.++|...
T Consensus 617 ~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 617 GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred cccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 32223333 567998888777899999999654
No 239
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=88.44 E-value=16 Score=38.95 Aligned_cols=152 Identities=14% Similarity=0.119 Sum_probs=91.0
Q ss_pred eEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeCCEEEEEeCCCCcEEEE
Q 023864 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKLEE 185 (276)
Q Consensus 108 QGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~tlk~i~~ 185 (276)
--|-++.++.|+ |+. =+-.|+-|++...+=+... --.-|-.-+++. +|+.|+--=.++++-+|+.-..++.--
T Consensus 373 LDlSWSKn~fLL-SSS--MDKTVRLWh~~~~~CL~~F--~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W 447 (712)
T KOG0283|consen 373 LDLSWSKNNFLL-SSS--MDKTVRLWHPGRKECLKVF--SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW 447 (712)
T ss_pred eecccccCCeeE-ecc--ccccEEeecCCCcceeeEE--ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEee
Confidence 356778766666 455 4678999999876533321 112233333332 344444444455555555555554433
Q ss_pred EecC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeC-C--EeeeeeeeeEEECC---EEEEEeCCCCCe
Q 023864 186 FTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK-G--REVRNLNELEFIKG---EVWANVWQVWPC 258 (276)
Q Consensus 186 ~~~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~-g--~pv~~lNELE~idG---~lyANvw~s~d~ 258 (276)
.... +---.-++|||+..+|.--.....|+|...++.+....|... + ..-+.+.-|++.-| +|.|.- .+ ..
T Consensus 448 ~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS-nD-Sr 525 (712)
T KOG0283|consen 448 NDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS-ND-SR 525 (712)
T ss_pred hhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEec-CC-Cc
Confidence 3221 112224678999988877677888999999999888777652 1 11124556677633 677776 44 78
Q ss_pred EEEEeCCC
Q 023864 259 IPYAYLQA 266 (276)
Q Consensus 259 I~vIDp~T 266 (276)
|-++|..+
T Consensus 526 IRI~d~~~ 533 (712)
T KOG0283|consen 526 IRIYDGRD 533 (712)
T ss_pred eEEEeccc
Confidence 99999855
No 240
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=88.23 E-value=1 Score=46.03 Aligned_cols=135 Identities=16% Similarity=0.209 Sum_probs=83.7
Q ss_pred eeEEEEEEecC-CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC-CceEEEEE---Ee-CCEEEEE
Q 023864 92 TIQVVNEFPHD-PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLT---LL-GEKLFQV 165 (276)
Q Consensus 92 t~~Vv~~~Phd-~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~-~~FgEGit---~~-g~~Lyql 165 (276)
..+|+.+.+.. ..--.+--+|++||.++. +| ..+.+|..||.....+.-.+.+.. +.=|.+|| +. +++...-
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iA-ag-c~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlS 381 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIA-AG-CLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLS 381 (641)
T ss_pred heeEEeeccCCCcccCceeeecCCCcchhh-hc-ccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhh
Confidence 44666666543 122234457889999963 44 689999999986554433333221 22233333 22 2333333
Q ss_pred EeeCCEEEEEeCCCCcE-EEEE-----ecCCCCeeEEeeCCCEEEEE------CCCceEEEEcCCCCcEEEEEEee
Q 023864 166 TWLQKTGFIYDQNNLNK-LEEF-----THQMKDGWGLATDGKVLFGS------DGSSMLYQIDPQTLKVIRKDIVR 229 (276)
Q Consensus 166 Twk~~~v~V~D~~tlk~-i~~~-----~~~~~EGWGLT~Dg~~L~vS------DGS~~L~viDp~t~~vi~~I~V~ 229 (276)
--.++.+-+||...+++ +..+ +|+ .--.+++||.+.++.. +++..|+|+|+.||..+.+|.+.
T Consensus 382 Rg~D~tLKvWDLrq~kkpL~~~tgL~t~~~-~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~ 456 (641)
T KOG0772|consen 382 RGFDDTLKVWDLRQFKKPLNVRTGLPTPFP-GTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS 456 (641)
T ss_pred ccCCCceeeeeccccccchhhhcCCCccCC-CCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC
Confidence 34678888999987764 3332 133 3456788988777652 23668999999999999999886
No 241
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.09 E-value=11 Score=39.71 Aligned_cols=125 Identities=19% Similarity=0.267 Sum_probs=87.4
Q ss_pred CCCCceEEEE-ecCCEEEEEcCCCCCCeEEEEeCCCC--cEEEEe------ecC--C--CceEEEEEEe-CCEEEEEEee
Q 023864 103 PRAFTQGLLY-AENDTLFESTGLYGRSSVRRVALETG--KVEAIN------QME--G--SYFGEGLTLL-GEKLFQVTWL 168 (276)
Q Consensus 103 ~~aFTQGL~~-~~dg~LyeStG~yg~S~I~~iDl~tg--kv~~~~------~l~--~--~~FgEGit~~-g~~LyqlTwk 168 (276)
...|++.|++ .++..|+.|+|+ +-.|..||..+| +++.+. .++ + ..| .++.- ++.+++.-=-
T Consensus 116 H~DYVkcla~~ak~~~lvaSgGL--D~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siY--SLA~N~t~t~ivsGgt 191 (735)
T KOG0308|consen 116 HKDYVKCLAYIAKNNELVASGGL--DRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIY--SLAMNQTGTIIVSGGT 191 (735)
T ss_pred ccchheeeeecccCceeEEecCC--CccEEEEEccCcchhhhhhccccccccCCCCCcccee--eeecCCcceEEEecCc
Confidence 4678999999 777889999995 567999999988 222221 222 1 223 22222 2357777777
Q ss_pred CCEEEEEeCCCCcEEEEEecCCCCeeE---EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCC
Q 023864 169 QKTGFIYDQNNLNKLEEFTHQMKDGWG---LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKG 232 (276)
Q Consensus 169 ~~~v~V~D~~tlk~i~~~~~~~~EGWG---LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g 232 (276)
++.+-+||+.|.+.+-.+. +..+..- +..||.+++-+-.+..|.++|..-.+-+.+..|..+|
T Consensus 192 ek~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~ 257 (735)
T KOG0308|consen 192 EKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG 257 (735)
T ss_pred ccceEEeccccccceeeee-ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCc
Confidence 8899999999999988876 2233333 4567777766545678889999888888888888766
No 242
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=88.03 E-value=9.7 Score=39.72 Aligned_cols=175 Identities=14% Similarity=0.169 Sum_probs=112.6
Q ss_pred eeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC-----------------------
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME----------------------- 147 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~----------------------- 147 (276)
..+++++.+-| +.+- --+-+++||+-..+||-| .-.|++||+.+-.+.-.--++
T Consensus 40 ~rieLiQdfe~-p~as-t~ik~s~DGqY~lAtG~Y-KP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR 116 (703)
T KOG2321|consen 40 QRIELIQDFEM-PTAS-TRIKVSPDGQYLLATGTY-KPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDR 116 (703)
T ss_pred HHHHHHHhcCC-cccc-ceeEecCCCcEEEEeccc-CCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCc
Confidence 45678888887 3443 467888999977789975 458999999864321111111
Q ss_pred --------CCc-------eEEEEEEeC--CEEEEEEeeCCEEEEEeCCCCcEEEEEecCCCCeeEEeeCC-CEEEEECC-
Q 023864 148 --------GSY-------FGEGLTLLG--EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDG-KVLFGSDG- 208 (276)
Q Consensus 148 --------~~~-------FgEGit~~g--~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg-~~L~vSDG- 208 (276)
... ||--++.+- -.||.+- -+..+|.++.+..+-+..|....++=|-+.-+. ..|++.-|
T Consensus 117 ~IefHak~G~hy~~RIP~~GRDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~ 195 (703)
T KOG2321|consen 117 TIEFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTE 195 (703)
T ss_pred eeeehhhcCeeeeeecCcCCccccccCCCccEEEee-cCcceEEEEccccccccccccccccceeeeecCccceEEeccc
Confidence 001 333344332 2444433 256788888888888888877644555544333 34555444
Q ss_pred CceEEEEcCCCCcEEEEEEeeeC------CEeeeeeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 209 SSMLYQIDPQTLKVIRKDIVRYK------GREVRNLNELEFIKGEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 209 S~~L~viDp~t~~vi~~I~V~~~------g~pv~~lNELE~idG~lyANvw~s~d~I~vIDp~T~~v 269 (276)
...|-||||.+-..++++.+... +.....+.-+.|.|.-|=++|..+...|..-|..+-+.
T Consensus 196 ~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p 262 (703)
T KOG2321|consen 196 DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP 262 (703)
T ss_pred CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc
Confidence 78999999999999999888642 22223355567888777778877756788888877543
No 243
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=87.74 E-value=21 Score=38.82 Aligned_cols=151 Identities=11% Similarity=0.043 Sum_probs=94.8
Q ss_pred eEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEe-ecCCCceEEEEEEe-CCEEEEEEeeCCEEEEEeCCCCcEEEE
Q 023864 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN-QMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNKLEE 185 (276)
Q Consensus 108 QGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~-~l~~~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~tlk~i~~ 185 (276)
.-++|+++|.+...+| .+-.|..++..++..+... ..... --+++++ ++.+..+.--+|++.+||..++.+..+
T Consensus 100 r~~~v~g~g~~iaags--dD~~vK~~~~~D~s~~~~lrgh~ap--Vl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~t 175 (933)
T KOG1274|consen 100 RDLAVSGSGKMIAAGS--DDTAVKLLNLDDSSQEKVLRGHDAP--VLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKT 175 (933)
T ss_pred eEEEEecCCcEEEeec--CceeEEEEeccccchheeecccCCc--eeeeeEcCCCCEEEEEecCceEEEEEcccchhhhh
Confidence 3678888888876555 5556777777765432222 12211 1355555 356666667789999999999888776
Q ss_pred Eec-------CCCCeeE---EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCC
Q 023864 186 FTH-------QMKDGWG---LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQ 254 (276)
Q Consensus 186 ~~~-------~~~EGWG---LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~ 254 (276)
++- ...+-++ -.|+|..|.+---.+.|.++++++.....+..-..... .++.+.|. +|+-.|+.-.
T Consensus 176 l~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss---~~~~~~wsPnG~YiAAs~~ 252 (933)
T KOG1274|consen 176 LTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSS---KFSDLQWSPNGKYIAASTL 252 (933)
T ss_pred cccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccccc---ceEEEEEcCCCcEEeeecc
Confidence 641 0011222 35786655554446889999999988776665443111 25666666 5666677767
Q ss_pred CCCeEEEEeCCC
Q 023864 255 VWPCIPYAYLQA 266 (276)
Q Consensus 255 s~d~I~vIDp~T 266 (276)
. +.|+|-|.+|
T Consensus 253 ~-g~I~vWnv~t 263 (933)
T KOG1274|consen 253 D-GQILVWNVDT 263 (933)
T ss_pred C-CcEEEEeccc
Confidence 7 8888888774
No 244
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.67 E-value=5.7 Score=37.44 Aligned_cols=131 Identities=20% Similarity=0.161 Sum_probs=89.2
Q ss_pred eeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK 170 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~ 170 (276)
.|-+|+..+.- ..+=+.-+.|..+..+..|++ -+++++.||-.+......+-++...=|.---...++..+.---++
T Consensus 89 ~TGkv~Rr~rg-H~aqVNtV~fNeesSVv~Sgs--fD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DG 165 (307)
T KOG0316|consen 89 NTGKVDRRFRG-HLAQVNTVRFNEESSVVASGS--FDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDG 165 (307)
T ss_pred ccCeeeeeccc-ccceeeEEEecCcceEEEecc--ccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCC
Confidence 35678888752 244456778876566777777 789999999887765444334432111111223577778888899
Q ss_pred EEEEEeCCCCcEEEEE-ecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEE
Q 023864 171 TGFIYDQNNLNKLEEF-THQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRK 225 (276)
Q Consensus 171 ~v~V~D~~tlk~i~~~-~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~ 225 (276)
++-.||....+....+ ..| -...-+++||..+.++-=.+.|..+|-+|+++++.
T Consensus 166 tvRtydiR~G~l~sDy~g~p-it~vs~s~d~nc~La~~l~stlrLlDk~tGklL~s 220 (307)
T KOG0316|consen 166 TVRTYDIRKGTLSSDYFGHP-ITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKS 220 (307)
T ss_pred cEEEEEeecceeehhhcCCc-ceeEEecCCCCEEEEeeccceeeecccchhHHHHH
Confidence 9999998766654332 122 13345889999999988888999999999988643
No 245
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=87.61 E-value=2.7 Score=43.10 Aligned_cols=165 Identities=15% Similarity=0.168 Sum_probs=99.7
Q ss_pred EEEEEEecCCCCCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCC---cEEEEee-cCCCceEEEEEEe-CCEEEEEEe
Q 023864 94 QVVNEFPHDPRAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETG---KVEAINQ-MEGSYFGEGLTLL-GEKLFQVTW 167 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tg---kv~~~~~-l~~~~FgEGit~~-g~~LyqlTw 167 (276)
+-++++.|. --+-..++++. .++| || |+..|.+||+..- -.+...+ +...-|=-.+-+. +++-..+--
T Consensus 411 rq~~tL~HG--EvVcAvtIS~~trhVy--Tg--GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGG 484 (705)
T KOG0639|consen 411 RQINTLAHG--EVVCAVTISNPTRHVY--TG--GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGG 484 (705)
T ss_pred HhhhhhccC--cEEEEEEecCCcceeE--ec--CCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecc
Confidence 344555552 22234566654 4588 88 9999999998532 1111211 2123333334443 333333334
Q ss_pred eCCEEEEEeCC--CCcEEEEEecCCCCeeE--EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEE
Q 023864 168 LQKTGFIYDQN--NLNKLEEFTHQMKDGWG--LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF 243 (276)
Q Consensus 168 k~~~v~V~D~~--tlk~i~~~~~~~~EGWG--LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~ 243 (276)
...++.|||.+ |.++..+.+-..+..++ +.+|-+..|.+-.+..|.++|..+..+++..+-..+|-..-.+ -
T Consensus 485 eastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdi----s 560 (705)
T KOG0639|consen 485 EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI----S 560 (705)
T ss_pred ccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEe----c
Confidence 47889999986 55555666543345555 5689999999888889999999999888887766555432111 1
Q ss_pred ECC-EEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 244 IKG-EVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 244 idG-~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
.|| +||-.= .+ |+|---|..+++..
T Consensus 561 ~dGtklWTGG-lD-ntvRcWDlregrql 586 (705)
T KOG0639|consen 561 KDGTKLWTGG-LD-NTVRCWDLREGRQL 586 (705)
T ss_pred CCCceeecCC-Cc-cceeehhhhhhhhh
Confidence 156 477432 34 77777777776643
No 246
>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED
Probab=87.54 E-value=17 Score=37.83 Aligned_cols=104 Identities=17% Similarity=0.309 Sum_probs=63.7
Q ss_pred CCCCCCCCceeeeEEEEEEecCCCCCceEEEEecC-CEEEEEcCCC----CCCeEEEEeCCCCcEEEEe-----------
Q 023864 81 FPGVDQSPSIYTIQVVNEFPHDPRAFTQGLLYAEN-DTLFESTGLY----GRSSVRRVALETGKVEAIN----------- 144 (276)
Q Consensus 81 ~~~~~~~~~~~t~~Vv~~~Phd~~aFTQGL~~~~d-g~LyeStG~y----g~S~I~~iDl~tgkv~~~~----------- 144 (276)
+..++.++.....+|..++|.+ ..|-.+-+. +.+|+..+.| |+..|+.+.++.|++..+-
T Consensus 119 faPv~ee~~~~~l~V~G~IP~~----L~Gty~RNGPnp~f~p~~~~H~FDGDGMvhav~f~dG~a~y~~RfVrT~~~~~E 194 (590)
T PLN02258 119 FAPVPEQPVRHNLPVTGRIPDC----IDGVYVRNGANPLFEPVAGHHLFDGDGMVHAVRIGNGSASYACRFTETNRLVQE 194 (590)
T ss_pred CcCccccCCcccceEEeeCCCC----CCeEEEEeCCCCCCCCCCCCccccCCceEEEEEECCCeEEEEeeeecchhHHHH
Confidence 3344555666677888888853 267666532 3355433322 6778999888888753321
Q ss_pred -ecCCCce-------------------------------------EEEEEEeCCEEEEEEeeCCEEEEEeCC---CCcEE
Q 023864 145 -QMEGSYF-------------------------------------GEGLTLLGEKLFQVTWLQKTGFIYDQN---NLNKL 183 (276)
Q Consensus 145 -~l~~~~F-------------------------------------gEGit~~g~~LyqlTwk~~~v~V~D~~---tlk~i 183 (276)
..+...| -.++..++++||. -|.++.-+.+|.+ ||+.+
T Consensus 195 ~~agr~l~~~~~g~~~~~~g~~r~~~~~~r~~~~~~d~~~~~~~ANT~vv~~~grLlA-L~E~g~Py~l~~d~~~TLeT~ 273 (590)
T PLN02258 195 RALGRPVFPKAIGELHGHSGIARLMLFYARGLFGLVDASRGTGVANAGLVYFNGRLLA-MSEDDLPYQVRITGDGDLETV 273 (590)
T ss_pred HhcCCcccccccccccccccccccchhhccccccccccccccCCCceeEEEECCEEEE-EEcCCCceEecCCCCCCcccC
Confidence 1111111 1234455789997 5567788888654 99999
Q ss_pred EEEecC
Q 023864 184 EEFTHQ 189 (276)
Q Consensus 184 ~~~~~~ 189 (276)
+.+.+.
T Consensus 274 G~~df~ 279 (590)
T PLN02258 274 GRYDFD 279 (590)
T ss_pred cccccC
Confidence 988764
No 247
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=87.07 E-value=3.9 Score=41.22 Aligned_cols=33 Identities=12% Similarity=0.327 Sum_probs=26.5
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCC
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYG 126 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg 126 (276)
+|+...|....-+...|.|.+||.||.++|.-+
T Consensus 135 ~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 135 DLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred EEEecCCCCCCcCCceEEECCCCcEEEEECCCC
Confidence 466677765566778899999999999999754
No 248
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=87.06 E-value=4.4 Score=39.53 Aligned_cols=113 Identities=12% Similarity=0.153 Sum_probs=84.3
Q ss_pred eEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe----CCEEEEEEeeCCEEEEEeCCCCcE
Q 023864 108 QGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL----GEKLFQVTWLQKTGFIYDQNNLNK 182 (276)
Q Consensus 108 QGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~----g~~LyqlTwk~~~v~V~D~~tlk~ 182 (276)
.-|-|+|.|. |.++| ....+|.||.+|-+--.... |..---++++-. .++||+..-++|.+-+||--+.+-
T Consensus 220 rsiSfHPsGefllvgT---dHp~~rlYdv~T~Qcfvsan-Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rC 295 (430)
T KOG0640|consen 220 RSISFHPSGEFLLVGT---DHPTLRLYDVNTYQCFVSAN-PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRC 295 (430)
T ss_pred eeEeecCCCceEEEec---CCCceeEEeccceeEeeecC-cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHH
Confidence 5788898875 55433 67899999999987544433 555556778776 389999999999999999999998
Q ss_pred EEEEecCCCCeeE-----EeeCCCEEEEECCCceEEEEcCCCCcEEEE
Q 023864 183 LEEFTHQMKDGWG-----LATDGKVLFGSDGSSMLYQIDPQTLKVIRK 225 (276)
Q Consensus 183 i~~~~~~~~EGWG-----LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~ 225 (276)
+.+|.-. -.|-. +|.||+++.-|--++.+..+...|++.+++
T Consensus 296 v~t~~~A-H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~ 342 (430)
T KOG0640|consen 296 VRTIGNA-HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKE 342 (430)
T ss_pred HHHHHhh-cCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEE
Confidence 8888632 12333 566888887766678888888888876644
No 249
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=87.04 E-value=10 Score=40.37 Aligned_cols=130 Identities=17% Similarity=0.156 Sum_probs=94.0
Q ss_pred eEEEEEEecCCCCCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCE
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKT 171 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~ 171 (276)
-+=+..|-| ..|+--++|.|- ++.|.|+- =+.+||.|++...+|..-..+..-.=+.-.+.+ ++..++--..|.
T Consensus 400 ~~CL~~F~H--ndfVTcVaFnPvDDryFiSGS--LD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~Pd-Gk~avIGt~~G~ 474 (712)
T KOG0283|consen 400 KECLKVFSH--NDFVTCVAFNPVDDRYFISGS--LDGKVRLWSISDKKVVDWNDLRDLITAVCYSPD-GKGAVIGTFNGY 474 (712)
T ss_pred cceeeEEec--CCeeEEEEecccCCCcEeecc--cccceEEeecCcCeeEeehhhhhhheeEEeccC-CceEEEEEeccE
Confidence 356888988 789999999984 67888755 477899999999999887777755444444444 677777778899
Q ss_pred EEEEeCCCCcEEEEEecC--------CC--CeeEEee-CCCEEEEECCCceEEEEcCCCCcEEEEEE
Q 023864 172 GFIYDQNNLNKLEEFTHQ--------MK--DGWGLAT-DGKVLFGSDGSSMLYQIDPQTLKVIRKDI 227 (276)
Q Consensus 172 v~V~D~~tlk~i~~~~~~--------~~--EGWGLT~-Dg~~L~vSDGS~~L~viDp~t~~vi~~I~ 227 (276)
+.+||...++....+... .+ -|.-..+ +-+.+.|+--+++|.++|..+-+++.+.+
T Consensus 475 C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfK 541 (712)
T KOG0283|consen 475 CRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFK 541 (712)
T ss_pred EEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhc
Confidence 999999999988776531 11 1222222 33467787779999999997766655544
No 250
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=87.00 E-value=8.8 Score=39.37 Aligned_cols=63 Identities=17% Similarity=-0.006 Sum_probs=46.8
Q ss_pred EEEEEEeeCCEEEEEeCCCCcEEEEE-ecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEE
Q 023864 161 KLFQVTWLQKTGFIYDQNNLNKLEEF-THQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVI 223 (276)
Q Consensus 161 ~LyqlTwk~~~v~V~D~~tlk~i~~~-~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi 223 (276)
.+.+-|..++.+-|||..+.+...-. +.+.-|..++.+|||.+.++|---.|+++|.+|+++.
T Consensus 373 ~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~ 436 (668)
T COG4946 373 GDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR 436 (668)
T ss_pred ceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee
Confidence 34445556668888888887754332 2344577889999999999998889999999998763
No 251
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=86.85 E-value=3.4 Score=40.75 Aligned_cols=104 Identities=19% Similarity=0.311 Sum_probs=66.7
Q ss_pred ceEEEEecCC-EEEEEcCCCCCCeEEEEeCCCCcEEEEe-ecCC--CceEEEEEEeC-C---------------EEEEEE
Q 023864 107 TQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAIN-QMEG--SYFGEGLTLLG-E---------------KLFQVT 166 (276)
Q Consensus 107 TQGL~~~~dg-~LyeStG~yg~S~I~~iDl~tgkv~~~~-~l~~--~~FgEGit~~g-~---------------~LyqlT 166 (276)
.-||.|+..| .||++.+-+| |.+++++.|+.+.-. +.+. -.|.-+++++. + -++.+-
T Consensus 117 PLGl~f~~~ggdL~VaDAYlG---L~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l 193 (376)
T KOG1520|consen 117 PLGIRFDKKGGDLYVADAYLG---LLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAAL 193 (376)
T ss_pred cceEEeccCCCeEEEEeccee---eEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeee
Confidence 3499998775 8999877444 788899888632211 1111 23444555543 2 222222
Q ss_pred e--eCCEEEEEeCCCCcE---EEEEecCCCCeeEEeeCCCEEEEEC-CCceEEEE
Q 023864 167 W--LQKTGFIYDQNNLNK---LEEFTHQMKDGWGLATDGKVLFGSD-GSSMLYQI 215 (276)
Q Consensus 167 w--k~~~v~V~D~~tlk~---i~~~~~~~~EGWGLT~Dg~~L~vSD-GS~~L~vi 215 (276)
. ..++++.||+.|... +....++ .|.+|++|+..++++. +..+|..+
T Consensus 194 ~g~~~GRl~~YD~~tK~~~VLld~L~F~--NGlaLS~d~sfvl~~Et~~~ri~ry 246 (376)
T KOG1520|consen 194 EGDPTGRLFRYDPSTKVTKVLLDGLYFP--NGLALSPDGSFVLVAETTTARIKRY 246 (376)
T ss_pred cCCCccceEEecCcccchhhhhhccccc--ccccCCCCCCEEEEEeeccceeeee
Confidence 2 568999999887653 3445554 8999999999999998 45566444
No 252
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.68 E-value=1.5 Score=48.10 Aligned_cols=173 Identities=10% Similarity=0.000 Sum_probs=102.9
Q ss_pred eeeEEEEEEecCCCCCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--C---CEEEE
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--G---EKLFQ 164 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g---~~Lyq 164 (276)
...+++.++.. .+.=+.||.|.+. +.|..|++ +++.|.+||+..-+. -...+...+.+-+... | .+++.
T Consensus 104 ~~~~~la~~~~-h~G~V~gLDfN~~q~nlLASGa--~~geI~iWDlnn~~t--P~~~~~~~~~~eI~~lsWNrkvqhILA 178 (1049)
T KOG0307|consen 104 ASEEVLATKSK-HTGPVLGLDFNPFQGNLLASGA--DDGEILIWDLNKPET--PFTPGSQAPPSEIKCLSWNRKVSHILA 178 (1049)
T ss_pred cchHHHhhhcc-cCCceeeeeccccCCceeeccC--CCCcEEEeccCCcCC--CCCCCCCCCcccceEeccchhhhHHhh
Confidence 35567777753 2344479999887 45888888 899999999986332 1112222233333332 2 46666
Q ss_pred EEeeCCEEEEEeCCCCcEEEEEecCCC-CeeE-E--eeCCC-EEEEECCCc---eEEEEcCCCCc-EEEEEEeeeCCEee
Q 023864 165 VTWLQKTGFIYDQNNLNKLEEFTHQMK-DGWG-L--ATDGK-VLFGSDGSS---MLYQIDPQTLK-VIRKDIVRYKGREV 235 (276)
Q Consensus 165 lTwk~~~v~V~D~~tlk~i~~~~~~~~-EGWG-L--T~Dg~-~L~vSDGS~---~L~viDp~t~~-vi~~I~V~~~g~pv 235 (276)
-.--++++.|+|.+--+++-.+.+..+ -.|- | .||+- .|+++.+++ .|..+|...-. -.+..+. +.-
T Consensus 179 S~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~----H~~ 254 (1049)
T KOG0307|consen 179 SGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEG----HQR 254 (1049)
T ss_pred ccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcc----ccc
Confidence 666778999999988888877776412 2133 3 45554 455544444 55555622111 1111111 211
Q ss_pred eeeeeeEEE--CCEEEEEeCCCCCeEEEEeCCCCcEEEEEEe
Q 023864 236 RNLNELEFI--KGEVWANVWQVWPCIPYAYLQAFGSSLVYVT 275 (276)
Q Consensus 236 ~~lNELE~i--dG~lyANvw~s~d~I~vIDp~T~~v~l~~~~ 275 (276)
.+--|+|- |.++.+.+..+ ++|+.=+++||+ +|+.+.
T Consensus 255 -GilslsWc~~D~~lllSsgkD-~~ii~wN~~tgE-vl~~~p 293 (1049)
T KOG0307|consen 255 -GILSLSWCPQDPRLLLSSGKD-NRIICWNPNTGE-VLGELP 293 (1049)
T ss_pred -ceeeeccCCCCchhhhcccCC-CCeeEecCCCce-EeeecC
Confidence 22234454 55788999888 999999999954 457664
No 253
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=86.45 E-value=12 Score=38.08 Aligned_cols=114 Identities=12% Similarity=0.059 Sum_probs=80.2
Q ss_pred CCCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC---CEEEEEEeeCCEEEEEeCCC
Q 023864 104 RAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG---EKLFQVTWLQKTGFIYDQNN 179 (276)
Q Consensus 104 ~aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g---~~LyqlTwk~~~v~V~D~~t 179 (276)
.+-+.-|.|+|= .-|+.++|.-.+..|+.||..+|+.++.+.-+... -.|+... .-+.-.-.-++.+.+|+-.+
T Consensus 343 ~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQV--csL~Wsk~~kEi~sthG~s~n~i~lw~~ps 420 (484)
T KOG0305|consen 343 TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQV--CSLIWSKKYKELLSTHGYSENQITLWKYPS 420 (484)
T ss_pred ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCce--eeEEEcCCCCEEEEecCCCCCcEEEEeccc
Confidence 344468888875 34777777556788999999999988887666442 2344432 23444445667899999999
Q ss_pred CcEEEEEec-C-CCCeeEEeeCCCEEEEECCCceEEEEcCCC
Q 023864 180 LNKLEEFTH-Q-MKDGWGLATDGKVLFGSDGSSMLYQIDPQT 219 (276)
Q Consensus 180 lk~i~~~~~-~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t 219 (276)
++++..+.- . .----.++|||..+.+..++++|.|++.=+
T Consensus 421 ~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 421 MKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred cceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 999888751 1 112235789999999999999999987544
No 254
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=86.21 E-value=2.1 Score=33.61 Aligned_cols=47 Identities=15% Similarity=0.268 Sum_probs=33.7
Q ss_pred CEEEEEeCCCCcEEE-EEecCCCCeeEEeeCCCEEEEEC-CCceEEEEcCC
Q 023864 170 KTGFIYDQNNLNKLE-EFTHQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQ 218 (276)
Q Consensus 170 ~~v~V~D~~tlk~i~-~~~~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~ 218 (276)
+.+.-||+.+.+... .+.. +-|.++++|++.|||++ ....|++..-+
T Consensus 36 ~~Vvyyd~~~~~~va~g~~~--aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 36 GNVVYYDGKEVKVVASGFSF--ANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred ceEEEEeCCEeEEeeccCCC--CceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 344447876655443 2444 48999999999999999 67888887643
No 255
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=86.18 E-value=11 Score=35.30 Aligned_cols=119 Identities=16% Similarity=0.158 Sum_probs=72.8
Q ss_pred EEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceE------------EEEEEeCCEEE
Q 023864 96 VNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFG------------EGLTLLGEKLF 163 (276)
Q Consensus 96 v~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~Fg------------EGit~~g~~Ly 163 (276)
+-.+|+....+ |-.+. +|.+|-- ..+...|.+||++++.+.....+|..-+- .-++++..-||
T Consensus 61 ~~~lp~~~~gT--g~VVy-nGs~yyn--k~~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLW 135 (249)
T KOG3545|consen 61 KYRLPYSWDGT--GHVVY-NGSLYYN--KAGTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLW 135 (249)
T ss_pred EEeCCCCcccc--ceEEE-cceEEee--ccCCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceeccccee
Confidence 33445533333 44444 3666643 24777899999999888777766632111 23456666677
Q ss_pred EE--EeeCC--EE-EEEeCCCCcEEEEEecC-----CCCeeEEeeCCCEEEEEC----CCceE-EEEcCCCCcE
Q 023864 164 QV--TWLQK--TG-FIYDQNNLNKLEEFTHQ-----MKDGWGLATDGKVLFGSD----GSSML-YQIDPQTLKV 222 (276)
Q Consensus 164 ql--Twk~~--~v-~V~D~~tlk~i~~~~~~-----~~EGWGLT~Dg~~L~vSD----GS~~L-~viDp~t~~v 222 (276)
++ |.+++ .+ ...|+.|++..++..+. .+++|=+| ..||+-+ ++..| +..|..+.+.
T Consensus 136 viYat~~~~g~iv~skLdp~tl~~e~tW~T~~~k~~~~~aF~iC---GvLY~v~S~~~~~~~i~yaydt~~~~~ 206 (249)
T KOG3545|consen 136 VIYATPENAGTIVLSKLDPETLEVERTWNTTLPKRSAGNAFMIC---GVLYVVHSYNCTHTQISYAYDTTTGTQ 206 (249)
T ss_pred EEecccccCCcEEeeccCHHHhheeeeeccccCCCCcCceEEEe---eeeEEEeccccCCceEEEEEEcCCCce
Confidence 65 33332 33 45899999999988532 45777787 3566644 34455 6788887765
No 256
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.13 E-value=5.3 Score=40.03 Aligned_cols=112 Identities=19% Similarity=0.163 Sum_probs=55.8
Q ss_pred CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--C-CEEEEEEeeCCEEEEEeCCC
Q 023864 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--G-EKLFQVTWLQKTGFIYDQNN 179 (276)
Q Consensus 103 ~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g-~~LyqlTwk~~~v~V~D~~t 179 (276)
...|.|-|.++|+|+...-+| ++.-..|.... +...-||+|+.+. . ++ |.+--+++++.++.--+
T Consensus 31 ~~~~p~~ls~npngr~v~V~g---~geY~iyt~~~--------~r~k~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCG---DGEYEIYTALA--------WRNKAFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFK 98 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEE---TTEEEEEETTT--------TEEEEEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTE
T ss_pred CCcCCeeEEECCCCCEEEEEc---CCEEEEEEccC--------CcccccCceeEEEEecCcc-EEEEECCCeEEEEEcCc
Confidence 355688999999987443333 34444444221 1223466665543 3 56 55555588888873222
Q ss_pred CcEEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEee
Q 023864 180 LNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVR 229 (276)
Q Consensus 180 lk~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~ 229 (276)
-+..+.++.+. -.=++-. |..|.++ +++.|.+.|.++.+++++|.|.
T Consensus 99 ~~~~k~i~~~~-~~~~If~-G~LL~~~-~~~~i~~yDw~~~~~i~~i~v~ 145 (443)
T PF04053_consen 99 NEVVKSIKLPF-SVEKIFG-GNLLGVK-SSDFICFYDWETGKLIRRIDVS 145 (443)
T ss_dssp E-TT-----SS--EEEEE--SSSEEEE-ETTEEEEE-TTT--EEEEESS-
T ss_pred cccceEEcCCc-ccceEEc-CcEEEEE-CCCCEEEEEhhHcceeeEEecC
Confidence 22334565441 1223444 7777776 3458999999999999999987
No 257
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=85.90 E-value=37 Score=35.15 Aligned_cols=139 Identities=9% Similarity=-0.013 Sum_probs=90.8
Q ss_pred CCCeEEEEeCCCCcEEEEeecCCCceEEE------EEEe-----------------CCEEEEEEeeCCEEEEEeCCCCcE
Q 023864 126 GRSSVRRVALETGKVEAINQMEGSYFGEG------LTLL-----------------GEKLFQVTWLQKTGFIYDQNNLNK 182 (276)
Q Consensus 126 g~S~I~~iDl~tgkv~~~~~l~~~~FgEG------it~~-----------------g~~LyqlTwk~~~v~V~D~~tlk~ 182 (276)
++..+++||.+++++.....--.+.-|-+ +.+. +.-+.++--..+.+..|+.+..++
T Consensus 13 ~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~i 92 (541)
T KOG4547|consen 13 GDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEI 92 (541)
T ss_pred CCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecCCeE
Confidence 45689999999998755542111211222 2221 125667777889999999999999
Q ss_pred EEEEecC-CCCeeEEeeCC---CEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCCe
Q 023864 183 LEEFTHQ-MKDGWGLATDG---KVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWPC 258 (276)
Q Consensus 183 i~~~~~~-~~EGWGLT~Dg---~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d~ 258 (276)
..++..+ ..++..-..|+ ..+|-.+++-++-.|++.+.++++...+... ...++----||.+.+.-. -.
T Consensus 93 t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~----~~~sl~is~D~~~l~~as---~~ 165 (541)
T KOG4547|consen 93 TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP----LVSSLCISPDGKILLTAS---RQ 165 (541)
T ss_pred EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC----ccceEEEcCCCCEEEecc---ce
Confidence 9998754 22333333333 4567677888999999999999988877631 112211122777776554 45
Q ss_pred EEEEeCCCCcEEE
Q 023864 259 IPYAYLQAFGSSL 271 (276)
Q Consensus 259 I~vIDp~T~~v~l 271 (276)
|.++|.+|+++++
T Consensus 166 ik~~~~~~kevv~ 178 (541)
T KOG4547|consen 166 IKVLDIETKEVVI 178 (541)
T ss_pred EEEEEccCceEEE
Confidence 9999999977664
No 258
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=85.64 E-value=19 Score=36.15 Aligned_cols=107 Identities=18% Similarity=0.094 Sum_probs=73.0
Q ss_pred CEEEEEcCCC--C--CCeEEEEeCCCCcEEEEe---ecCCCceEEEEEEeCCEEEEEE---e---eCCEEEEEeCCCCcE
Q 023864 116 DTLFESTGLY--G--RSSVRRVALETGKVEAIN---QMEGSYFGEGLTLLGEKLFQVT---W---LQKTGFIYDQNNLNK 182 (276)
Q Consensus 116 g~LyeStG~y--g--~S~I~~iDl~tgkv~~~~---~l~~~~FgEGit~~g~~LyqlT---w---k~~~v~V~D~~tlk~ 182 (276)
.+||.=.|.- . -+.|+.+|+.|++-.... ..|+...+-.++.++++||+.- + ..+.+++||.++.+-
T Consensus 123 ~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W 202 (482)
T KOG0379|consen 123 DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTW 202 (482)
T ss_pred CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccc
Confidence 5666544421 1 148999999999754443 3355667788999999999862 2 458899999998874
Q ss_pred EEEE-----ecCCCCeeEEeeCCCEEEEEC-------CCceEEEEcCCCCcEE
Q 023864 183 LEEF-----THQMKDGWGLATDGKVLFGSD-------GSSMLYQIDPQTLKVI 223 (276)
Q Consensus 183 i~~~-----~~~~~EGWGLT~Dg~~L~vSD-------GS~~L~viDp~t~~vi 223 (276)
.+-. |.+ ..|-+++-.++.+|+-= ..+.++.+|..+.+-.
T Consensus 203 ~~~~~~g~~P~p-R~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~ 254 (482)
T KOG0379|consen 203 SELDTQGEAPSP-RYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWK 254 (482)
T ss_pred eecccCCCCCCC-CCCceEEEECCeEEEEeccccCCceecceEeeecccceee
Confidence 3222 233 46677777677666622 2578999999997766
No 259
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=85.13 E-value=0.61 Score=45.91 Aligned_cols=49 Identities=18% Similarity=0.303 Sum_probs=40.6
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEee
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ 145 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~ 145 (276)
-++++|+.....|+-++.+.+ ++++.|+| |++.|+.||..+|+.+...+
T Consensus 184 f~IesfclGH~eFVS~isl~~-~~~LlS~s--GD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 184 FVIESFCLGHKEFVSTISLTD-NYLLLSGS--GDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred cchhhhccccHhheeeeeecc-CceeeecC--CCCcEEEEecccCCcccccc
Confidence 367778877899999999985 66667888 99999999999999876543
No 260
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=85.00 E-value=43 Score=33.22 Aligned_cols=139 Identities=14% Similarity=0.122 Sum_probs=78.7
Q ss_pred CCeEEE--EeCCCCcEEEEee----cCCCc-eEEEEEEe----CCEEEEE-EeeCCEEEEEeC---CCC----cEEEEEe
Q 023864 127 RSSVRR--VALETGKVEAINQ----MEGSY-FGEGLTLL----GEKLFQV-TWLQKTGFIYDQ---NNL----NKLEEFT 187 (276)
Q Consensus 127 ~S~I~~--iDl~tgkv~~~~~----l~~~~-FgEGit~~----g~~Lyql-Twk~~~v~V~D~---~tl----k~i~~~~ 187 (276)
.++|+. +|.++|.+..... ++... =..|+++. ++.+|+. +-+++.+-.|-. .+. +++++|.
T Consensus 126 ~n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~ 205 (381)
T PF02333_consen 126 RNSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK 205 (381)
T ss_dssp T-EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE
T ss_pred CCeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec
Confidence 456554 4777786643321 11110 03477775 2466655 567777666533 333 4678887
Q ss_pred cC-CCCeeEEeeCCCEEEEECCCceEEEEcCC--CCcEEEEEEeeeCCEeeeeeeeeEEE-----CCEEEEEeCCCCCeE
Q 023864 188 HQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQ--TLKVIRKDIVRYKGREVRNLNELEFI-----KGEVWANVWQVWPCI 259 (276)
Q Consensus 188 ~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~--t~~vi~~I~V~~~g~pv~~lNELE~i-----dG~lyANvw~s~d~I 259 (276)
.+ ..||+.....-..||+++..--|+.++.+ ....-..|....+++-..-+.-|..+ +|+|.|..=+. |..
T Consensus 206 ~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~-~sf 284 (381)
T PF02333_consen 206 VGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGD-NSF 284 (381)
T ss_dssp -SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGG-TEE
T ss_pred CCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCC-CeE
Confidence 65 56888888778899999988999999865 33332334332222222233333332 35799999677 899
Q ss_pred EEEeCCC
Q 023864 260 PYAYLQA 266 (276)
Q Consensus 260 ~vIDp~T 266 (276)
.|-|-+.
T Consensus 285 ~Vy~r~~ 291 (381)
T PF02333_consen 285 AVYDREG 291 (381)
T ss_dssp EEEESST
T ss_pred EEEecCC
Confidence 9998775
No 261
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=84.95 E-value=31 Score=32.69 Aligned_cols=136 Identities=19% Similarity=0.203 Sum_probs=73.3
Q ss_pred CeEEEEeCCCCcEEEEe-e---cCCCceEEEEEEeC-CEEEEEEeeC-----CEEEEEeCCCCcEEEEEecCCCCee---
Q 023864 128 SSVRRVALETGKVEAIN-Q---MEGSYFGEGLTLLG-EKLFQVTWLQ-----KTGFIYDQNNLNKLEEFTHQMKDGW--- 194 (276)
Q Consensus 128 S~I~~iDl~tgkv~~~~-~---l~~~~FgEGit~~g-~~LyqlTwk~-----~~v~V~D~~tlk~i~~~~~~~~EGW--- 194 (276)
-++.++|++++++.... + .+..++--.+...+ ++-+.+.|.+ -.+.++|+.+.+....+.. ..+||
T Consensus 158 v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e-~~~~Wv~~ 236 (353)
T PF00930_consen 158 VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE-TSDGWVDV 236 (353)
T ss_dssp EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE-ESSSSSSS
T ss_pred eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe-cCCcceee
Confidence 45677899888764221 2 12344444555544 4424455533 3567789877654332221 13455
Q ss_pred ----EEe-eCC-CEEEEEC--CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEE-EEeC---CCCCeEEEE
Q 023864 195 ----GLA-TDG-KVLFGSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVW-ANVW---QVWPCIPYA 262 (276)
Q Consensus 195 ----GLT-~Dg-~~L~vSD--GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~ly-ANvw---~s~d~I~vI 262 (276)
.+. +|+ ..|++++ |-..|+.+|.++.+.. .++.+.-.|..+....-.++.|| .+.- .. -.|.++
T Consensus 237 ~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~---~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~-r~lY~v 312 (353)
T PF00930_consen 237 YDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR---QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGE-RHLYRV 312 (353)
T ss_dssp SSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE---ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTS-BEEEEE
T ss_pred ecccccccCCCCEEEEEEEcCCCcEEEEEccccccee---ccccCceeecccceEcCCCCEEEEEecCCCCCc-eEEEEE
Confidence 232 455 4677776 7889999999887633 44443344433332223356776 3332 23 488888
Q ss_pred eCC-CCc
Q 023864 263 YLQ-AFG 268 (276)
Q Consensus 263 Dp~-T~~ 268 (276)
+.+ .++
T Consensus 313 ~~~~~~~ 319 (353)
T PF00930_consen 313 SLDSGGE 319 (353)
T ss_dssp ETTETTE
T ss_pred EeCCCCC
Confidence 888 543
No 262
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=84.79 E-value=11 Score=37.85 Aligned_cols=104 Identities=18% Similarity=0.136 Sum_probs=56.8
Q ss_pred CCEEEEEEe----eCCEEEEEeCCCCcEEEEEecCCC-Ce-eEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCC
Q 023864 159 GEKLFQVTW----LQKTGFIYDQNNLNKLEEFTHQMK-DG-WGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKG 232 (276)
Q Consensus 159 g~~LyqlTw----k~~~v~V~D~~tlk~i~~~~~~~~-EG-WGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g 232 (276)
.+.||.++. .....+.+|. ...+...++.... .. .-..+||..|+.+. ..+..+|.- ++++.......+.
T Consensus 113 ~~gl~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~ 188 (477)
T PF05935_consen 113 EDGLYFVNGNDWDSSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGY 188 (477)
T ss_dssp TT-EEEEEETT--BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTE
T ss_pred CCcEEEEeCCCCCCCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcc
Confidence 478898888 7788999994 5567777775511 11 24677888888876 999999975 7787776664322
Q ss_pred Eeeeeeeee-EEECCEEEEEeC-------------CCCCeEEEEeCCCCcEE
Q 023864 233 REVRNLNEL-EFIKGEVWANVW-------------QVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 233 ~pv~~lNEL-E~idG~lyANvw-------------~s~d~I~vIDp~T~~v~ 270 (276)
..++| |+ +.-||.+.+-.| .. |.|+.|| .+|+++
T Consensus 189 ~~~HH--D~~~l~nGn~L~l~~~~~~~~~~~~~~~~~-D~Ivevd-~tG~vv 236 (477)
T PF05935_consen 189 YDFHH--DIDELPNGNLLILASETKYVDEDKDVDTVE-DVIVEVD-PTGEVV 236 (477)
T ss_dssp E-B-S---EEE-TTS-EEEEEEETTEE-TS-EE---S--EEEEE--TTS-EE
T ss_pred ccccc--ccEECCCCCEEEEEeecccccCCCCccEec-CEEEEEC-CCCCEE
Confidence 12221 11 123776554444 15 8999999 897765
No 263
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=84.34 E-value=26 Score=30.19 Aligned_cols=157 Identities=15% Similarity=0.112 Sum_probs=96.6
Q ss_pred CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEE-eeCCEEEEEeCCCC
Q 023864 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVT-WLQKTGFIYDQNNL 180 (276)
Q Consensus 103 ~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlT-wk~~~v~V~D~~tl 180 (276)
.....+.+.|++++..+.+++. .+..+..||..+++.+..... ......+++... +..+.++ -.++.+.+||..+.
T Consensus 154 ~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~ 231 (466)
T COG2319 154 HSESVTSLAFSPDGKLLASGSS-LDGTIKLWDLRTGKPLSTLAG-HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG 231 (466)
T ss_pred CcccEEEEEECCCCCEEEecCC-CCCceEEEEcCCCceEEeecc-CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC
Confidence 3455579999999875555552 488999999998777666554 233344555543 3345555 77888888898877
Q ss_pred cEEE-EEecCCCCe-e-EEeeCCCEEEEECCCceEEEEcCCCCcE-EEEEEeeeCCEeeeeeeeeEEEC-CEEEEEeCCC
Q 023864 181 NKLE-EFTHQMKDG-W-GLATDGKVLFGSDGSSMLYQIDPQTLKV-IRKDIVRYKGREVRNLNELEFIK-GEVWANVWQV 255 (276)
Q Consensus 181 k~i~-~~~~~~~EG-W-GLT~Dg~~L~vSDGS~~L~viDp~t~~v-i~~I~V~~~g~pv~~lNELE~id-G~lyANvw~s 255 (276)
+.+. .+... ... . -+++++..+........+.++|...... .... . ++ -..++++++.. +..++.....
T Consensus 232 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~--~~-~~~v~~~~~~~~~~~~~~~~~d 305 (466)
T COG2319 232 KLLRSTLSGH-SDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--S--GH-SSSVLSVAFSPDGKLLASGSSD 305 (466)
T ss_pred cEEeeecCCC-CcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--e--cC-CccEEEEEECCCCCEEEEeeCC
Confidence 7777 45432 122 3 4778886666555688899999887765 2222 1 11 23445555653 4444444444
Q ss_pred CCeEEEEeCCCCc
Q 023864 256 WPCIPYAYLQAFG 268 (276)
Q Consensus 256 ~d~I~vIDp~T~~ 268 (276)
..+..-|..++.
T Consensus 306 -~~~~~~~~~~~~ 317 (466)
T COG2319 306 -GTVRLWDLETGK 317 (466)
T ss_pred -CcEEEEEcCCCc
Confidence 444444666644
No 264
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=84.31 E-value=7.6 Score=36.00 Aligned_cols=131 Identities=15% Similarity=0.137 Sum_probs=81.0
Q ss_pred EEecCCCCCceEEEEecCCEEEEEcCCC-CCCeEEEEeCCC----CcEEEEe-ecC-CCceEEEEEEeCCEEEEEEeeCC
Q 023864 98 EFPHDPRAFTQGLLYAENDTLFESTGLY-GRSSVRRVALET----GKVEAIN-QME-GSYFGEGLTLLGEKLFQVTWLQK 170 (276)
Q Consensus 98 ~~Phd~~aFTQGL~~~~dg~LyeStG~y-g~S~I~~iDl~t----gkv~~~~-~l~-~~~FgEGit~~g~~LyqlTwk~~ 170 (276)
.++.....|.-|=.+.+||+|+...|.. |...++.+++.+ .+..... .|- .+-|+--.++-+++++++-=..+
T Consensus 60 pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~ 139 (243)
T PF07250_consen 60 PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNN 139 (243)
T ss_pred eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCC
Confidence 3445678999999999999988655532 557799999876 2222221 233 46788888888888888876554
Q ss_pred EEEEEeCC-CC-cEEEEEecC----CCCeeE------EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeee
Q 023864 171 TGFIYDQN-NL-NKLEEFTHQ----MKDGWG------LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 171 ~v~V~D~~-tl-k~i~~~~~~----~~EGWG------LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~ 230 (276)
--+-+-+. .. .....+++- ...++. |.+||+.++.++-... ++|+.+.++++++.--.
T Consensus 140 ~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~--i~d~~~n~v~~~lP~lP 209 (243)
T PF07250_consen 140 PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSI--IYDYKTNTVVRTLPDLP 209 (243)
T ss_pred CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcE--EEeCCCCeEEeeCCCCC
Confidence 44444333 11 111111100 011222 6789999888885444 45999998888766533
No 265
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=84.25 E-value=5.9 Score=39.19 Aligned_cols=149 Identities=13% Similarity=0.014 Sum_probs=91.4
Q ss_pred eEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEe
Q 023864 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFT 187 (276)
Q Consensus 108 QGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~ 187 (276)
.-..|+ +++++|+- |+-.|++|+..|++.++.+ ..+--|..+...+++|.+----++++-++|....+.+.-+.
T Consensus 324 NvVdfd--~kyIVsAS--gDRTikvW~~st~efvRtl--~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLe 397 (499)
T KOG0281|consen 324 NVVDFD--DKYIVSAS--GDRTIKVWSTSTCEFVRTL--NGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLE 397 (499)
T ss_pred eeeccc--cceEEEec--CCceEEEEeccceeeehhh--hcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHh
Confidence 444454 56778877 9999999999999988874 44444777777899999999999999999999887655442
Q ss_pred cCCCCee-EEeeCCCEEEEECC-CceEEEEcCCCCcEE----EEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCCeEEE
Q 023864 188 HQMKDGW-GLATDGKVLFGSDG-SSMLYQIDPQTLKVI----RKDIVRYKGREVRNLNELEFIKGEVWANVWQVWPCIPY 261 (276)
Q Consensus 188 ~~~~EGW-GLT~Dg~~L~vSDG-S~~L~viDp~t~~vi----~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d~I~v 261 (276)
-- .|=. -+--|.+++ ||-| +.+|.++|.++..-- .++-+...-+--.+.--|.+.+-.|.+.- .+ |.|++
T Consensus 398 GH-EeLvRciRFd~krI-VSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsss-Hd-dtILi 473 (499)
T KOG0281|consen 398 GH-EELVRCIRFDNKRI-VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSS-HD-DTILI 473 (499)
T ss_pred ch-HHhhhheeecCcee-eeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEecc-CC-CeEEE
Confidence 00 0000 023355554 4443 778888886664321 12211110011112223445555555444 67 88888
Q ss_pred EeCCC
Q 023864 262 AYLQA 266 (276)
Q Consensus 262 IDp~T 266 (276)
=|-..
T Consensus 474 WdFl~ 478 (499)
T KOG0281|consen 474 WDFLN 478 (499)
T ss_pred EEcCC
Confidence 77544
No 266
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=83.75 E-value=28 Score=30.03 Aligned_cols=159 Identities=14% Similarity=0.092 Sum_probs=91.6
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCc-EEEEeec-CC-CceEEEE-EEeCCEEEEE-EeeCCEEEEEeCC
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGK-VEAINQM-EG-SYFGEGL-TLLGEKLFQV-TWLQKTGFIYDQN 178 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgk-v~~~~~l-~~-~~FgEGi-t~~g~~Lyql-Twk~~~v~V~D~~ 178 (276)
.....+..+.+++..+...+ ....+..||...+. ....... .. .....-. ...+..+... ...++.+.++|..
T Consensus 65 ~~~i~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 142 (466)
T COG2319 65 EDSITSIAFSPDGELLLSGS--SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS 142 (466)
T ss_pred cceEEEEEECCCCcEEEEec--CCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEec
Confidence 45557888887777666555 67889999998886 3344333 21 1221122 1223324444 3447899999999
Q ss_pred C-CcEEEEEecCCC--CeeEEeeCCCEEEEECC-CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCE-EEEEeC
Q 023864 179 N-LNKLEEFTHQMK--DGWGLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGE-VWANVW 253 (276)
Q Consensus 179 t-lk~i~~~~~~~~--EGWGLT~Dg~~L~vSDG-S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~-lyANvw 253 (276)
+ .+....+..... ....++++++.++.... ...+.++|..+.+.+..+.-. ..++..+... .+|. +.+...
T Consensus 143 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~--~~~~~~~~~~~ 218 (466)
T COG2319 143 TPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH--TDPVSSLAFS--PDGGLLIASGS 218 (466)
T ss_pred CCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccC--CCceEEEEEc--CCcceEEEEec
Confidence 8 676666654311 24457788887776654 889999999886666555542 1223322211 2443 444433
Q ss_pred CCCCeEEEEeCCCCcE
Q 023864 254 QVWPCIPYAYLQAFGS 269 (276)
Q Consensus 254 ~s~d~I~vIDp~T~~v 269 (276)
.. ..|.+-|..++.+
T Consensus 219 ~d-~~i~~wd~~~~~~ 233 (466)
T COG2319 219 SD-GTIRLWDLSTGKL 233 (466)
T ss_pred CC-CcEEEEECCCCcE
Confidence 44 5555445554433
No 267
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=83.54 E-value=3.5 Score=41.16 Aligned_cols=118 Identities=12% Similarity=0.091 Sum_probs=79.1
Q ss_pred CCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCCcEE
Q 023864 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKL 183 (276)
Q Consensus 105 aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tlk~i 183 (276)
.=+.+|+|+|++.-|.++- +++.|.+||+.-.+-.+.+ -+.+.=.-.+..+. .-|...-=+++.|-.+|+.+.+.+
T Consensus 181 eaIRdlafSpnDskF~t~S--dDg~ikiWdf~~~kee~vL-~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl 257 (464)
T KOG0284|consen 181 EAIRDLAFSPNDSKFLTCS--DDGTIKIWDFRMPKEERVL-RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCL 257 (464)
T ss_pred hhhheeccCCCCceeEEec--CCCeEEEEeccCCchhhee-ccCCCCcceeccCCccceeEEccCCceeEeecCCCcchh
Confidence 3447999999888888877 9999999999877654443 12232233445554 445555567889999999999988
Q ss_pred EEEecC--CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEE
Q 023864 184 EEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRK 225 (276)
Q Consensus 184 ~~~~~~--~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~ 225 (276)
.++..- .--+.-+.+++.+|..---+..+.++|-.+++.+.+
T Consensus 258 ~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~ 301 (464)
T KOG0284|consen 258 ATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFT 301 (464)
T ss_pred hhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHH
Confidence 776421 012223556775555444467889999887776543
No 268
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=83.52 E-value=17 Score=36.12 Aligned_cols=107 Identities=21% Similarity=0.271 Sum_probs=63.7
Q ss_pred CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEE-----eCCEEEEEEeeCCEEEEEeC
Q 023864 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL-----LGEKLFQVTWLQKTGFIYDQ 177 (276)
Q Consensus 103 ~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~-----~g~~LyqlTwk~~~v~V~D~ 177 (276)
.+..+--|.+.+||..+. +.-||++.|.+||+++|.-+.-.+.+. -|+++ +|+.||.+|- +...-+++.
T Consensus 194 gh~pVtsmqwn~dgt~l~-tAS~gsssi~iWdpdtg~~~pL~~~gl----gg~slLkwSPdgd~lfaAt~-davfrlw~e 267 (445)
T KOG2139|consen 194 GHNPVTSMQWNEDGTILV-TASFGSSSIMIWDPDTGQKIPLIPKGL----GGFSLLKWSPDGDVLFAATC-DAVFRLWQE 267 (445)
T ss_pred CCceeeEEEEcCCCCEEe-ecccCcceEEEEcCCCCCcccccccCC----CceeeEEEcCCCCEEEEecc-cceeeeehh
Confidence 345566789999988765 445899999999999996433222222 25544 3688888774 444555643
Q ss_pred CCCcEEEEEecCCC--CeeEEeeCCCEE-EEECCCceEEEE
Q 023864 178 NNLNKLEEFTHQMK--DGWGLATDGKVL-FGSDGSSMLYQI 215 (276)
Q Consensus 178 ~tlk~i~~~~~~~~--EGWGLT~Dg~~L-~vSDGS~~L~vi 215 (276)
+.-....+.....+ ++-=-+|+|.+| |+.-|+..||-+
T Consensus 268 ~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl 308 (445)
T KOG2139|consen 268 NQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSL 308 (445)
T ss_pred cccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEE
Confidence 32222222222101 111136789876 555699988765
No 269
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=83.48 E-value=2.2 Score=43.24 Aligned_cols=115 Identities=10% Similarity=0.080 Sum_probs=83.7
Q ss_pred EEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEE-eC--CEEEEEEeeCCEEEEEeCCCCcEEEE
Q 023864 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL-LG--EKLFQVTWLQKTGFIYDQNNLNKLEE 185 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~-~g--~~LyqlTwk~~~v~V~D~~tlk~i~~ 185 (276)
-|.|-|.-.|+.+++ ....++..|..+|+++..+..+.+.- -.+ .| +-+..+---+|+|..|.|+..+++-.
T Consensus 214 rLeFLPyHfLL~~~~--~~G~L~Y~DVS~GklVa~~~t~~G~~---~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvK 288 (545)
T KOG1272|consen 214 RLEFLPYHFLLVAAS--EAGFLKYQDVSTGKLVASIRTGAGRT---DVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVK 288 (545)
T ss_pred hhcccchhheeeecc--cCCceEEEeechhhhhHHHHccCCcc---chhhcCCccceEEEcCCCceEEecCCCCcchHHH
Confidence 677777556888877 78899999999999988776554311 111 12 56667777899999999999998877
Q ss_pred Ee-cC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEe
Q 023864 186 FT-HQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIV 228 (276)
Q Consensus 186 ~~-~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V 228 (276)
+- +. .--+.++.++|.++..|--+..+-++|..+|....++..
T Consensus 289 iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 289 ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred HHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence 63 11 125566777777766555588999999999987666655
No 270
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.18 E-value=44 Score=31.94 Aligned_cols=170 Identities=16% Similarity=0.146 Sum_probs=107.6
Q ss_pred eeEEEEEEecCCCCCceEEEEecC--CEEEEEcCCCCCCeEEEEeCCCC-cEEEEeecC-CCceEEEEEEeCCEEEEEEe
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAEN--DTLFESTGLYGRSSVRRVALETG-KVEAINQME-GSYFGEGLTLLGEKLFQVTW 167 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~d--g~LyeStG~yg~S~I~~iDl~tg-kv~~~~~l~-~~~FgEGit~~g~~LyqlTw 167 (276)
.++.++.|.....-| ++.++++ ..++... |+.+++.||+.-- +.++..+-- ...|..--...+++.+++.-
T Consensus 50 gi~e~~s~d~~D~Lf--dV~Wse~~e~~~~~a~---GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsS 124 (311)
T KOG0277|consen 50 GIQECQSYDTEDGLF--DVAWSENHENQVIAAS---GDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSS 124 (311)
T ss_pred CeEEEEeeeccccee--EeeecCCCcceEEEEe---cCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeec
Confidence 667889998877888 9999876 4677654 5689999995321 122221111 23343333334567777777
Q ss_pred eCCEEEEEeCCCCcEEEEEecC--CCCeeEEeeCCCEEEEEC-CCceEEEEcCCC-CcEEEEEEeeeCCEeeeeeeeeEE
Q 023864 168 LQKTGFIYDQNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSD-GSSMLYQIDPQT-LKVIRKDIVRYKGREVRNLNELEF 243 (276)
Q Consensus 168 k~~~v~V~D~~tlk~i~~~~~~--~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t-~~vi~~I~V~~~g~pv~~lNELE~ 243 (276)
.++++-++|++-.+-+.+|.-. .-.+-...|--..|+.|- |...+.++|... ++-+- |.+ ++..-|.+
T Consensus 125 WD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~a-------h~~Eil~c 196 (311)
T KOG0277|consen 125 WDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEA-------HNSEILCC 196 (311)
T ss_pred cCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEe-------ccceeEee
Confidence 8899999999988888888621 112334555556677765 777788888432 22211 333 33322333
Q ss_pred E----CCEEEEEeCCCCCeEEEEeCCCCcEEEEEEe
Q 023864 244 I----KGEVWANVWQVWPCIPYAYLQAFGSSLVYVT 275 (276)
Q Consensus 244 i----dG~lyANvw~s~d~I~vIDp~T~~v~l~~~~ 275 (276)
. |..+.|.=... +.|-.=|.+..++.|.+|.
T Consensus 197 dw~ky~~~vl~Tg~vd-~~vr~wDir~~r~pl~eL~ 231 (311)
T KOG0277|consen 197 DWSKYNHNVLATGGVD-NLVRGWDIRNLRTPLFELN 231 (311)
T ss_pred cccccCCcEEEecCCC-ceEEEEehhhccccceeec
Confidence 2 55677776666 8888889999888887764
No 271
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.74 E-value=18 Score=39.64 Aligned_cols=121 Identities=14% Similarity=0.140 Sum_probs=81.1
Q ss_pred EEEEEe-cCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEe-eCCEE
Q 023864 95 VVNEFP-HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW-LQKTG 172 (276)
Q Consensus 95 Vv~~~P-hd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTw-k~~~v 172 (276)
++++|. ||. -+.|+.|+|+.-||+|+| .+=.|.+|+..+.+.+.+. ++.-.|---+.++...=|.+.- .++++
T Consensus 43 li~rFdeHdG--pVRgv~FH~~qplFVSGG--DDykIkVWnYk~rrclftL-~GHlDYVRt~~FHheyPWIlSASDDQTI 117 (1202)
T KOG0292|consen 43 LIDRFDEHDG--PVRGVDFHPTQPLFVSGG--DDYKIKVWNYKTRRCLFTL-LGHLDYVRTVFFHHEYPWILSASDDQTI 117 (1202)
T ss_pred HHhhhhccCC--ccceeeecCCCCeEEecC--CccEEEEEecccceehhhh-ccccceeEEeeccCCCceEEEccCCCeE
Confidence 466664 543 346999999888999999 8889999999998876553 2333344455555555555543 34566
Q ss_pred EEEeCCCCcEEEEEecCCCCeeEEee---CCCEEEEECC-CceEEEEcCCCCcE
Q 023864 173 FIYDQNNLNKLEEFTHQMKDGWGLAT---DGKVLFGSDG-SSMLYQIDPQTLKV 222 (276)
Q Consensus 173 ~V~D~~tlk~i~~~~~~~~EGWGLT~---Dg~~L~vSDG-S~~L~viDp~t~~v 222 (276)
-|++-.+.+.+....= -..+-+|. .-+-|+||-. +.+|.++|-.-++.
T Consensus 118 rIWNwqsr~~iavltG--HnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRk 169 (1202)
T KOG0292|consen 118 RIWNWQSRKCIAVLTG--HNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRK 169 (1202)
T ss_pred EEEeccCCceEEEEec--CceEEEeeccCCccceEEEecccceEEEEeecchhc
Confidence 6777777777776652 25566664 3467888764 78899999655443
No 272
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=82.72 E-value=1.6 Score=46.79 Aligned_cols=159 Identities=11% Similarity=0.113 Sum_probs=95.4
Q ss_pred EEEecCCCCCceEEEEecCCEEE-----EEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCE
Q 023864 97 NEFPHDPRAFTQGLLYAENDTLF-----ESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKT 171 (276)
Q Consensus 97 ~~~Phd~~aFTQGL~~~~dg~Ly-----eStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~ 171 (276)
.+.+-+.+.=.-+|++.. +.|| .+.+.|+...=..||.+-.+.+..-.+|- ++++..+|.+|-.+ ++.
T Consensus 574 ~~~~spe~~~v~~l~~ss-~Slgagl~dgt~a~y~rap~gSwd~ep~~~~~~g~lPv----rsla~~ed~~was~--gG~ 646 (925)
T KOG3522|consen 574 SEPPSPEHESVKLLLFSS-GSLGAGLIDGTLAVYGRAPSGSWDGEPNISIPTGSLPV----RSLAFQEDFVWASE--GGC 646 (925)
T ss_pred ccCCCCchhhhhhhhccc-cccccCccCCccccccCCCCCCCCCCCccccccCCccc----cchhhhhceeeeec--CCc
Confidence 333333333334555553 4455 44445554443347766444333333332 35566677776665 999
Q ss_pred EEEEeCCCCcEEEEEecCCCCeeEEee---CCCEEEE--ECCCceEEEEcCCCCcEEEEEEeee---CCEeeeeeeeeEE
Q 023864 172 GFIYDQNNLNKLEEFTHQMKDGWGLAT---DGKVLFG--SDGSSMLYQIDPQTLKVIRKDIVRY---KGREVRNLNELEF 243 (276)
Q Consensus 172 v~V~D~~tlk~i~~~~~~~~EGWGLT~---Dg~~L~v--SDGS~~L~viDp~t~~vi~~I~V~~---~g~pv~~lNELE~ 243 (276)
|+||...|+...+....-.-|+-.+++ -|.-+|| ++|+.-.++ +.+|+.-...+..-. .+-|++ -|--
T Consensus 647 V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlf-htetl~hlqd~niaT~vt~~lP~~---klls 722 (925)
T KOG3522|consen 647 VHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLF-HTETLWHLQDSNIATSVTVDLPFG---KLLS 722 (925)
T ss_pred eEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEe-cccccCCccccccCcceeecCCCc---cccc
Confidence 999999999888876532247777665 3555666 678777777 888877655554432 222333 3345
Q ss_pred ECCEEEEEeCCCCCeEEEEeCCCCcEEE
Q 023864 244 IKGEVWANVWQVWPCIPYAYLQAFGSSL 271 (276)
Q Consensus 244 idG~lyANvw~s~d~I~vIDp~T~~v~l 271 (276)
+.|++|. . +.|.|.++.|..|.+
T Consensus 723 v~~rl~c----~-gl~~V~~~~~l~v~~ 745 (925)
T KOG3522|consen 723 VPGRLWC----Q-GLLMVLTSLTLLVAL 745 (925)
T ss_pred CCCcccc----c-ceeEEeccceeEEEe
Confidence 6888887 5 889999998855543
No 273
>KOG4328 consensus WD40 protein [Function unknown]
Probab=82.66 E-value=13 Score=37.79 Aligned_cols=161 Identities=10% Similarity=0.019 Sum_probs=92.4
Q ss_pred CceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcE-EEEeecCC-CceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcE
Q 023864 106 FTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKV-EAINQMEG-SYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNK 182 (276)
Q Consensus 106 FTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv-~~~~~l~~-~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~ 182 (276)
+..++.|..+.. +|. .+.|| ...+||+.+++- .....+-+ +.=+..+-.....++..-=.++++-+||...+..
T Consensus 281 ~fs~~d~~~e~~~vl~-~~~~G--~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~ 357 (498)
T KOG4328|consen 281 WFSSLDFSAESRSVLF-GDNVG--NFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRG 357 (498)
T ss_pred eeeeccccCCCccEEE-eeccc--ceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcC
Confidence 336666665433 333 44567 788899988653 11112221 1111122222345555555678888999888766
Q ss_pred EEE--Ee-cCCCCee---EEeeCCCEEEEECCCceEEEEcC----CCCcEEEEEEeee-CCEeeeeeeeeEEEC--CEEE
Q 023864 183 LEE--FT-HQMKDGW---GLATDGKVLFGSDGSSMLYQIDP----QTLKVIRKDIVRY-KGREVRNLNELEFIK--GEVW 249 (276)
Q Consensus 183 i~~--~~-~~~~EGW---GLT~Dg~~L~vSDGS~~L~viDp----~t~~vi~~I~V~~-~g~pv~~lNELE~id--G~ly 249 (276)
.+. +. ++..--. =++|+|..|..++.+++|.++|. +.+....+|.=.. -|+-+..+ ..+|.- ..|+
T Consensus 358 K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~f-KA~W~P~~~li~ 436 (498)
T KOG4328|consen 358 KASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPF-KAAWDPDYNLIV 436 (498)
T ss_pred CCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccch-hheeCCCccEEE
Confidence 553 21 2211222 27788888888889999999998 5566666665433 22311111 233443 3466
Q ss_pred EEeCCCCCeEEEEeCCCCcEEEE
Q 023864 250 ANVWQVWPCIPYAYLQAFGSSLV 272 (276)
Q Consensus 250 ANvw~s~d~I~vIDp~T~~v~l~ 272 (276)
+.. +. ..|=+||++.++.+..
T Consensus 437 vg~-~~-r~IDv~~~~~~q~v~e 457 (498)
T KOG4328|consen 437 VGR-YP-RPIDVFDGNGGQMVCE 457 (498)
T ss_pred Eec-cC-cceeEEcCCCCEEeee
Confidence 666 44 6799999999775543
No 274
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=82.61 E-value=16 Score=34.70 Aligned_cols=95 Identities=15% Similarity=0.193 Sum_probs=52.6
Q ss_pred EEEEecCCEEEEEcCCCCCCeEEEEeCCCCcE---EEEe-ec--CCCceEEEEEEeC-----CEEEEEEeeC--------
Q 023864 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKV---EAIN-QM--EGSYFGEGLTLLG-----EKLFQVTWLQ-------- 169 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv---~~~~-~l--~~~~FgEGit~~g-----~~LyqlTwk~-------- 169 (276)
+|+|.|||+||++. -...|++++ ..|.. +... .+ ...-=--||+++. +.||+..-..
T Consensus 6 ~~a~~pdG~l~v~e---~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 6 SMAFLPDGRLLVAE---RSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEETTSCEEEEE---TTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred EEEEeCCCcEEEEe---CCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 78999999999852 267899999 55554 2222 11 1111225888887 7999887743
Q ss_pred CEEEEEe--CC--CCc----EEEEEec-CCCCe--eE--EeeCCCEEEEECC
Q 023864 170 KTGFIYD--QN--NLN----KLEEFTH-QMKDG--WG--LATDGKVLFGSDG 208 (276)
Q Consensus 170 ~~v~V~D--~~--tlk----~i~~~~~-~~~EG--WG--LT~Dg~~L~vSDG 208 (276)
.++..+. .. ++. ++...+. ..... .+ +.+|| .||+|-|
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G 132 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVG 132 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeC
Confidence 3454443 33 222 2223343 11222 33 56788 9999776
No 275
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=82.52 E-value=6.2 Score=41.72 Aligned_cols=110 Identities=14% Similarity=0.200 Sum_probs=68.5
Q ss_pred cCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcE-EEEe--ecCCCceEEEEEEe-CCEEEEEEe----eCCEE
Q 023864 101 HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKV-EAIN--QMEGSYFGEGLTLL-GEKLFQVTW----LQKTG 172 (276)
Q Consensus 101 hd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv-~~~~--~l~~~~FgEGit~~-g~~LyqlTw----k~~~v 172 (276)
|..+-| |+++++||++..+.+ .+..|++|.+..++. ++.- +++.+ |.-|++. ++++.+++- -+..+
T Consensus 719 HtdqIf--~~AWSpdGr~~AtVc--KDg~~rVy~Prs~e~pv~Eg~gpvgtR--gARi~wacdgr~viv~Gfdk~SeRQv 792 (1012)
T KOG1445|consen 719 HTDQIF--GIAWSPDGRRIATVC--KDGTLRVYEPRSREQPVYEGKGPVGTR--GARILWACDGRIVIVVGFDKSSERQV 792 (1012)
T ss_pred CcCcee--EEEECCCCcceeeee--cCceEEEeCCCCCCCccccCCCCccCc--ceeEEEEecCcEEEEecccccchhhh
Confidence 334556 999999999998888 889999999998753 2222 33322 4445442 566666654 34667
Q ss_pred EEEeCCCCc--EEEEEecC-CCCee--EEeeCCCEEEEEC-CCceEEEEc
Q 023864 173 FIYDQNNLN--KLEEFTHQ-MKDGW--GLATDGKVLFGSD-GSSMLYQID 216 (276)
Q Consensus 173 ~V~D~~tlk--~i~~~~~~-~~EGW--GLT~Dg~~L~vSD-GS~~L~viD 216 (276)
.+||+.++. .+.+.-.. .+.-. -..+|-..||++- |+..|+.+.
T Consensus 793 ~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yE 842 (1012)
T KOG1445|consen 793 QMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYE 842 (1012)
T ss_pred hhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEE
Confidence 888887765 34433211 01111 1345777888887 777776543
No 276
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=82.45 E-value=9.8 Score=30.00 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=38.6
Q ss_pred EEEEecC-CEEEEEcC--CC-------------CCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCC--EEEEEEeeCC
Q 023864 109 GLLYAEN-DTLFESTG--LY-------------GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGE--KLFQVTWLQK 170 (276)
Q Consensus 109 GL~~~~d-g~LyeStG--~y-------------g~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~--~LyqlTwk~~ 170 (276)
+|.++++ |.+|.+-. .| ...+|.+||+.|+++. +-++.-.|+-|+++..| .+.+.--...
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~--vl~~~L~fpNGVals~d~~~vlv~Et~~~ 79 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETT--VLLDGLYFPNGVALSPDESFVLVAETGRY 79 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEE--EEEEEESSEEEEEE-TTSSEEEEEEGGGT
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEE--EehhCCCccCeEEEcCCCCEEEEEeccCc
Confidence 5677777 77775433 22 3367999999999862 33555679999999754 5555544445
Q ss_pred EEEEE
Q 023864 171 TGFIY 175 (276)
Q Consensus 171 ~v~V~ 175 (276)
++..|
T Consensus 80 Ri~ry 84 (89)
T PF03088_consen 80 RILRY 84 (89)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 55544
No 277
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=81.91 E-value=14 Score=36.74 Aligned_cols=138 Identities=12% Similarity=0.191 Sum_probs=83.8
Q ss_pred CCCCCCceeeeEE---EEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC
Q 023864 83 GVDQSPSIYTIQV---VNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG 159 (276)
Q Consensus 83 ~~~~~~~~~t~~V---v~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g 159 (276)
..+..+.++..+. ..++.. ...|++||.++....+ ++| .+.+|..|-.+- ...+++.....+. ||.-..
T Consensus 86 s~DG~VkiWnlsqR~~~~~f~A-H~G~V~Gi~v~~~~~~--tvg--dDKtvK~wk~~~-~p~~tilg~s~~~--gIdh~~ 157 (433)
T KOG0268|consen 86 SCDGEVKIWNLSQRECIRTFKA-HEGLVRGICVTQTSFF--TVG--DDKTVKQWKIDG-PPLHTILGKSVYL--GIDHHR 157 (433)
T ss_pred ccCceEEEEehhhhhhhheeec-ccCceeeEEecccceE--Eec--CCcceeeeeccC-Ccceeeecccccc--cccccc
Confidence 3566666665554 444432 2569999999862233 466 566788876643 3444433333322 333221
Q ss_pred -CEEEEEEeeCCEEEEEeCCCCcEEEEEecCCC--CeeEEeeCCCEEEEECC-CceEEEEcCCCCcEEEEEEeee
Q 023864 160 -EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMK--DGWGLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 160 -~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~--EGWGLT~Dg~~L~vSDG-S~~L~viDp~t~~vi~~I~V~~ 230 (276)
+.+| +-.+..+.+||..-..++.++..+.. --.-+.|-...++.|-| ...|.++|..+.+.++++..+.
T Consensus 158 ~~~~F--aTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m 230 (433)
T KOG0268|consen 158 KNSVF--ATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTM 230 (433)
T ss_pred ccccc--cccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeec
Confidence 2222 33467788999888888887764310 11113344556777775 5689999999999999998876
No 278
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=81.01 E-value=4.2 Score=24.93 Aligned_cols=26 Identities=12% Similarity=0.385 Sum_probs=20.7
Q ss_pred CceEEEEecCCEEEEEcCCCCCCeEEEE
Q 023864 106 FTQGLLYAENDTLFESTGLYGRSSVRRV 133 (276)
Q Consensus 106 FTQGL~~~~dg~LyeStG~yg~S~I~~i 133 (276)
+..|++++++|.+|++- .+..+|.++
T Consensus 3 ~P~gvav~~~g~i~VaD--~~n~rV~vf 28 (28)
T PF01436_consen 3 YPHGVAVDSDGNIYVAD--SGNHRVQVF 28 (28)
T ss_dssp SEEEEEEETTSEEEEEE--CCCTEEEEE
T ss_pred CCcEEEEeCCCCEEEEE--CCCCEEEEC
Confidence 34699999999999874 588888764
No 279
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=81.01 E-value=23 Score=37.87 Aligned_cols=35 Identities=11% Similarity=0.167 Sum_probs=28.5
Q ss_pred ceEEEEecCC-EEEEEcCCCCCCeEEEEeCCCCcEEEEee
Q 023864 107 TQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQ 145 (276)
Q Consensus 107 TQGL~~~~dg-~LyeStG~yg~S~I~~iDl~tgkv~~~~~ 145 (276)
..-++|.||| +|...+| +++..||+..|.+.+..+
T Consensus 15 i~d~afkPDGsqL~lAAg----~rlliyD~ndG~llqtLK 50 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAAG----SRLLVYDTSDGTLLQPLK 50 (1081)
T ss_pred hheeEECCCCceEEEecC----CEEEEEeCCCcccccccc
Confidence 3578999998 4888888 899999999998766543
No 280
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=80.81 E-value=2.9 Score=43.45 Aligned_cols=71 Identities=13% Similarity=0.157 Sum_probs=51.0
Q ss_pred ecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEE----EEeCCEEEEEEeeCCEEEEE
Q 023864 100 PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGL----TLLGEKLFQVTWLQKTGFIY 175 (276)
Q Consensus 100 Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGi----t~~g~~LyqlTwk~~~v~V~ 175 (276)
+.-+.++.+-|.++-+|.||++|- .-+.+||..+||..+....+ |-|-| .-.+++||+-||+. ++++
T Consensus 160 ~ll~d~~V~aLv~D~~g~lWvgT~----dGL~~fd~~~gkalql~s~~---~dk~I~al~~d~qg~LWVGTdqG--v~~~ 230 (671)
T COG3292 160 PLLKDTPVVALVFDANGRLWVGTP----DGLSYFDAGRGKALQLASPP---LDKAINALIADVQGRLWVGTDQG--VYLQ 230 (671)
T ss_pred ccccCccceeeeeeccCcEEEecC----CcceEEccccceEEEcCCCc---chhhHHHHHHHhcCcEEEEeccc--eEEE
Confidence 444688999999998899998765 67999999999987754333 21222 12368999999875 5555
Q ss_pred eCCC
Q 023864 176 DQNN 179 (276)
Q Consensus 176 D~~t 179 (276)
++..
T Consensus 231 e~~G 234 (671)
T COG3292 231 EAEG 234 (671)
T ss_pred chhh
Confidence 5444
No 281
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=80.71 E-value=4.2 Score=24.91 Aligned_cols=25 Identities=4% Similarity=0.175 Sum_probs=21.0
Q ss_pred eEEEEEEe-CCEEEEEEeeCCEEEEE
Q 023864 151 FGEGLTLL-GEKLFQVTWLQKTGFIY 175 (276)
Q Consensus 151 FgEGit~~-g~~LyqlTwk~~~v~V~ 175 (276)
++.|+++. ++.||++...++++.+|
T Consensus 3 ~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 3 YPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 46788885 68999999999998875
No 282
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=80.49 E-value=58 Score=35.34 Aligned_cols=146 Identities=14% Similarity=0.132 Sum_probs=75.9
Q ss_pred EEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEE-------eeCCEEEEEeCCCC--
Q 023864 110 LLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVT-------WLQKTGFIYDQNNL-- 180 (276)
Q Consensus 110 L~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlT-------wk~~~v~V~D~~tl-- 180 (276)
|....|..|+..... ..+.|++.|+++||++..-++....=-..++.. .+.-|+| ...+.+|.+|+.--
T Consensus 487 mL~~~d~~mil~~~~-~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~-~K~aqlt~e~tflGls~n~lfriDpR~~~~ 564 (794)
T PF08553_consen 487 MLHDQDRNMILLDPN-NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPD-SKFAQLTNEQTFLGLSDNSLFRIDPRLSGN 564 (794)
T ss_pred hhhccccceEeecCC-CCCceEEEecCCCcEEEEeecCCCcceeEeccc-ccccccCCCceEEEECCCceEEeccCCCCC
Confidence 333334455544443 678999999999999998877653201112211 1222222 23678888998632
Q ss_pred cEEE----EEecCCC-CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECC-EEEEEeCC
Q 023864 181 NKLE----EFTHQMK-DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG-EVWANVWQ 254 (276)
Q Consensus 181 k~i~----~~~~~~~-EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG-~lyANvw~ 254 (276)
+++. .+..... ...+.|.+|...+.|+ ...|..+|.- ++- ++-...-=|.||.++- . -.|| +|.|.|=
T Consensus 565 k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~-~G~IRLyd~~-g~~-AKT~lp~lG~pI~~iD-v-t~DGkwilaTc~- 638 (794)
T PF08553_consen 565 KLVDSQSKQYSSKNNFSCFATTEDGYIAVGSN-KGDIRLYDRL-GKR-AKTALPGLGDPIIGID-V-TADGKWILATCK- 638 (794)
T ss_pred ceeeccccccccCCCceEEEecCCceEEEEeC-CCcEEeeccc-chh-hhhcCCCCCCCeeEEE-e-cCCCcEEEEeec-
Confidence 2221 2221111 2223344454444444 4555566732 221 2222212256776652 1 1256 5999993
Q ss_pred CCCeEEEEeCC
Q 023864 255 VWPCIPYAYLQ 265 (276)
Q Consensus 255 s~d~I~vIDp~ 265 (276)
.+++.||+.
T Consensus 639 --tyLlLi~t~ 647 (794)
T PF08553_consen 639 --TYLLLIDTL 647 (794)
T ss_pred --ceEEEEEEe
Confidence 679999974
No 283
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=80.14 E-value=62 Score=31.64 Aligned_cols=122 Identities=5% Similarity=0.064 Sum_probs=82.5
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCC---CcEEEEeecCCCceEEEEEEeCCEEEEEEee
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALET---GKVEAINQMEGSYFGEGLTLLGEKLFQVTWL 168 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~t---gkv~~~~~l~~~~FgEGit~~g~~LyqlTwk 168 (276)
+.+.+..++.| -++.|..+++ +-+|++.= .+-+..+|..+ -++..+..++..- .+-+++.|++-|+.-|.
T Consensus 118 sP~~~~~lnt~--gyaygv~vsG-n~aYVadl---ddgfLivdvsdpssP~lagrya~~~~d-~~~v~ISGn~AYvA~~d 190 (370)
T COG5276 118 SPTLIGFLNTD--GYAYGVYVSG-NYAYVADL---DDGFLIVDVSDPSSPQLAGRYALPGGD-THDVAISGNYAYVAWRD 190 (370)
T ss_pred CcceeccccCC--ceEEEEEecC-CEEEEeec---cCcEEEEECCCCCCceeeeeeccCCCC-ceeEEEecCeEEEEEeC
Confidence 34466677664 5666888875 57888642 34455666554 3455555555421 25788899999998776
Q ss_pred CCEEEE--EeCCCCcEEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCc
Q 023864 169 QKTGFI--YDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLK 221 (276)
Q Consensus 169 ~~~v~V--~D~~tlk~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~ 221 (276)
++-..+ =|+.+-+.++....+ +.-++...-+++.|+.++..-|..+|..+.+
T Consensus 191 ~GL~ivDVSnp~sPvli~~~n~g-~g~~sv~vsdnr~y~vvy~egvlivd~s~~s 244 (370)
T COG5276 191 GGLTIVDVSNPHSPVLIGSYNTG-PGTYSVSVSDNRAYLVVYDEGVLIVDVSGPS 244 (370)
T ss_pred CCeEEEEccCCCCCeEEEEEecC-CceEEEEecCCeeEEEEcccceEEEecCCCC
Confidence 665443 345667788888876 4556667778888888988889999877765
No 284
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=80.08 E-value=17 Score=38.36 Aligned_cols=168 Identities=15% Similarity=0.132 Sum_probs=91.3
Q ss_pred EEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEE-eecCCC--ceEEEEEEeCCEEEEEEeeCCE
Q 023864 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAI-NQMEGS--YFGEGLTLLGEKLFQVTWLQKT 171 (276)
Q Consensus 95 Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~-~~l~~~--~FgEGit~~g~~LyqlTwk~~~ 171 (276)
...=.-|+..-| -|.+.|...+++++- |++.++.||.+++++... ..++.. .=-|.+...|..+|+.--+++.
T Consensus 93 lk~~~aH~nAif--Dl~wapge~~lVsas--GDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~ 168 (720)
T KOG0321|consen 93 LKKPLAHKNAIF--DLKWAPGESLLVSAS--GDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGE 168 (720)
T ss_pred hcccccccceeE--eeccCCCceeEEEcc--CCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCc
Confidence 333445766666 778887444777766 999999999999887554 122210 1112333445556666666666
Q ss_pred EEEEeCC-CC----------------------cEE-EEEecC-----CCCee--E-EeeCCCEEEEEC-CCceEEEEcCC
Q 023864 172 GFIYDQN-NL----------------------NKL-EEFTHQ-----MKDGW--G-LATDGKVLFGSD-GSSMLYQIDPQ 218 (276)
Q Consensus 172 v~V~D~~-tl----------------------k~i-~~~~~~-----~~EGW--G-LT~Dg~~L~vSD-GS~~L~viDp~ 218 (276)
+.++|.. +. +++ ++++-. .-++. + |--|...|.-+- ++..|-|+|..
T Consensus 169 illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLR 248 (720)
T KOG0321|consen 169 ILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLR 248 (720)
T ss_pred EEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeec
Confidence 6666642 11 111 111100 01221 1 223545554433 37889999977
Q ss_pred CCcEEEEE-Eeee------CCEeeeeeeeeEEE--CCEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 219 TLKVIRKD-IVRY------KGREVRNLNELEFI--KGEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 219 t~~vi~~I-~V~~------~g~pv~~lNELE~i--dG~lyANvw~s~d~I~vIDp~T~~v 269 (276)
+.+-..+. ..+. ..+.+...| |-.+ +-+||||| .+ |.|..-|..+..+
T Consensus 249 k~~~~~r~ep~~~~~~~t~skrs~G~~n-L~lDssGt~L~AsC-tD-~sIy~ynm~s~s~ 305 (720)
T KOG0321|consen 249 KNYTAYRQEPRGSDKYPTHSKRSVGQVN-LILDSSGTYLFASC-TD-NSIYFYNMRSLSI 305 (720)
T ss_pred ccccccccCCCcccCccCcccceeeeEE-EEecCCCCeEEEEe-cC-CcEEEEeccccCc
Confidence 65432221 1111 223444444 1121 34899999 46 9999999988654
No 285
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=80.05 E-value=15 Score=40.29 Aligned_cols=163 Identities=10% Similarity=0.106 Sum_probs=96.6
Q ss_pred ceEEEEecCCEEEEEcCCCCCCeEEEEeCCC----------CcEEEEe------ecCCCceEE--EEEEe-CCEEEEEEe
Q 023864 107 TQGLLYAENDTLFESTGLYGRSSVRRVALET----------GKVEAIN------QMEGSYFGE--GLTLL-GEKLFQVTW 167 (276)
Q Consensus 107 TQGL~~~~dg~LyeStG~yg~S~I~~iDl~t----------gkv~~~~------~l~~~~FgE--Git~~-g~~LyqlTw 167 (276)
.--+.|++||..+.|++ ++.-|.+|+.+. |...... .+-.+. ++ -+... ++.+.+.--
T Consensus 72 v~CVR~S~dG~~lAsGS--DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~-~DV~Dv~Wsp~~~~lvS~s 148 (942)
T KOG0973|consen 72 VNCVRFSPDGSYLASGS--DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD-SDVLDVNWSPDDSLLVSVS 148 (942)
T ss_pred eeEEEECCCCCeEeecc--CcceEEEeeecccCCcccccccccccccceeeEEEEEecCC-CccceeccCCCccEEEEec
Confidence 35677999998777666 555566676652 1100000 000000 00 11111 367777777
Q ss_pred eCCEEEEEeCCCCcEEEEEec-C-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeee-eeeeeEEE
Q 023864 168 LQKTGFIYDQNNLNKLEEFTH-Q-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVR-NLNELEFI 244 (276)
Q Consensus 168 k~~~v~V~D~~tlk~i~~~~~-~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~-~lNELE~i 244 (276)
.++++.+||..||+.++.+.- . ..-|....|-|+++-.--.+.+|-+++..++.+.++|.=-.+..+.. +.--|-|.
T Consensus 149 ~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWS 228 (942)
T KOG0973|consen 149 LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWS 228 (942)
T ss_pred ccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccC
Confidence 899999999999999998862 2 23455566668887654457789999989999988886532211110 11112243
Q ss_pred -CCEEEE----EeCCCCCeEEEEeCCCCcEEEEE
Q 023864 245 -KGEVWA----NVWQVWPCIPYAYLQAFGSSLVY 273 (276)
Q Consensus 245 -dG~lyA----Nvw~s~d~I~vIDp~T~~v~l~~ 273 (276)
||...| -+-.. .+|.+|+-+|.++....
T Consensus 229 PDG~~las~nA~n~~~-~~~~IieR~tWk~~~~L 261 (942)
T KOG0973|consen 229 PDGHHLASPNAVNGGK-STIAIIERGTWKVDKDL 261 (942)
T ss_pred CCcCeecchhhccCCc-ceeEEEecCCceeeeee
Confidence 665332 22345 68999998887765443
No 286
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=79.53 E-value=42 Score=32.82 Aligned_cols=128 Identities=11% Similarity=0.073 Sum_probs=73.5
Q ss_pred eeeEEEEEEecCC-CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCC----EEEEE
Q 023864 91 YTIQVVNEFPHDP-RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGE----KLFQV 165 (276)
Q Consensus 91 ~t~~Vv~~~Phd~-~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~----~Lyql 165 (276)
.+.+++..+-+.. ..-.--|+++ |....|+| .+..|++||+.+.+-+..+-.... -...+-+... .|..
T Consensus 29 ~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGs--sDetI~IYDm~k~~qlg~ll~Hag-sitaL~F~~~~S~shLlS- 102 (362)
T KOG0294|consen 29 VKPTLKPLFAFSAHAGSITALAVS--GPYVASGS--SDETIHIYDMRKRKQLGILLSHAG-SITALKFYPPLSKSHLLS- 102 (362)
T ss_pred cceeeeccccccccccceeEEEec--ceeEeccC--CCCcEEEEeccchhhhcceecccc-ceEEEEecCCcchhheee-
Confidence 4555555554422 2223456664 56666666 788999999988765444332221 1122223322 2222
Q ss_pred EeeCCEEEEEeCCCCcEEEEEecC--CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEE
Q 023864 166 TWLQKTGFIYDQNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIR 224 (276)
Q Consensus 166 Twk~~~v~V~D~~tlk~i~~~~~~--~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~ 224 (276)
--.+|.+.++|...++.++++.-- .--+..+.|-|+.-..--|+..|..+|.-+++.-.
T Consensus 103 ~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~ 163 (362)
T KOG0294|consen 103 GSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF 163 (362)
T ss_pred ecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce
Confidence 235799999999999999998632 12344455655544333346666667766665533
No 287
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=79.41 E-value=4.4 Score=40.04 Aligned_cols=80 Identities=13% Similarity=0.038 Sum_probs=65.5
Q ss_pred ceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEE
Q 023864 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (276)
Q Consensus 107 TQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~ 186 (276)
.--+.+++|++.+..+- .+..|++.....--++....+|..-|--+|++..+++..--=-++++++||..+++.+.++
T Consensus 154 l~dVavS~D~~~IitaD--RDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 154 LLDVAVSPDDQFIITAD--RDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred hheeeecCCCCEEEEec--CCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCCccccc
Confidence 34578888887555455 5677888777776678888999999999999999888777778899999999999999888
Q ss_pred ec
Q 023864 187 TH 188 (276)
Q Consensus 187 ~~ 188 (276)
++
T Consensus 232 dl 233 (390)
T KOG3914|consen 232 DL 233 (390)
T ss_pred ch
Confidence 64
No 288
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=79.39 E-value=12 Score=37.64 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=72.7
Q ss_pred ceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEE------e--ecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCC
Q 023864 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAI------N--QMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQN 178 (276)
Q Consensus 107 TQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~------~--~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~ 178 (276)
+..|+|+.+|+.+.|.| .+-.++.|+.+.--+.+. . +--.++|.-.+..-|.+||. --+.++|..-|..
T Consensus 59 iNAlqFS~N~~~L~SGG--DD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~S-G~~~~~VI~HDiE 135 (609)
T KOG4227|consen 59 INALQFSHNDRFLASGG--DDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYS-GERWGTVIKHDIE 135 (609)
T ss_pred cceeeeccCCeEEeecC--CcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEec-CCCcceeEeeecc
Confidence 46799998899999888 777888998875322111 1 11146786666655666664 3456778888888
Q ss_pred CCcEEEEEecC--CCCeeEE--eeCCCEEEEECCCceEEEEcCCC
Q 023864 179 NLNKLEEFTHQ--MKDGWGL--ATDGKVLFGSDGSSMLYQIDPQT 219 (276)
Q Consensus 179 tlk~i~~~~~~--~~EGWGL--T~Dg~~L~vSDGS~~L~viDp~t 219 (276)
|.+.|--+... .+.=||| .|-...|+++--...|.+||-..
T Consensus 136 t~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd 180 (609)
T KOG4227|consen 136 TKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRD 180 (609)
T ss_pred cceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccC
Confidence 88888777654 2344554 45556666655577888888543
No 289
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=78.42 E-value=22 Score=36.63 Aligned_cols=99 Identities=12% Similarity=0.113 Sum_probs=53.4
Q ss_pred CCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcE--EEEEecCCCCeeEEeeCCC
Q 023864 124 LYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNK--LEEFTHQMKDGWGLATDGK 201 (276)
Q Consensus 124 ~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~--i~~~~~~~~EGWGLT~Dg~ 201 (276)
.+..+.|-+||.++|++.+..+==.+.|+.++..+|..+.+.| ....+.++|.+|.++ +.+-.+++--+...++++.
T Consensus 378 t~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN-dr~el~vididngnv~~idkS~~~lItdf~~~~nsr 456 (668)
T COG4946 378 TNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN-DRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSR 456 (668)
T ss_pred ccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc-CceEEEEEEecCCCeeEecccccceeEEEEEcCCce
Confidence 4478899999999999866553334778777776655433332 334455555554433 2222222222233444555
Q ss_pred EEEEE--CC--CceEEEEcCCCCcEE
Q 023864 202 VLFGS--DG--SSMLYQIDPQTLKVI 223 (276)
Q Consensus 202 ~L~vS--DG--S~~L~viDp~t~~vi 223 (276)
++--+ +| +..|.+.|.++.|+.
T Consensus 457 ~iAYafP~gy~tq~Iklydm~~~Kiy 482 (668)
T COG4946 457 WIAYAFPEGYYTQSIKLYDMDGGKIY 482 (668)
T ss_pred eEEEecCcceeeeeEEEEecCCCeEE
Confidence 44222 23 456666666665553
No 290
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=77.80 E-value=69 Score=30.91 Aligned_cols=158 Identities=13% Similarity=0.085 Sum_probs=93.5
Q ss_pred CCCceEEEEecC------CEEEEEcCCCCCCeEEEEeCCCCcEEEEe-ecCCCceEEEEEEeC------CEEEEEEe-eC
Q 023864 104 RAFTQGLLYAEN------DTLFESTGLYGRSSVRRVALETGKVEAIN-QMEGSYFGEGLTLLG------EKLFQVTW-LQ 169 (276)
Q Consensus 104 ~aFTQGL~~~~d------g~LyeStG~yg~S~I~~iDl~tgkv~~~~-~l~~~~FgEGit~~g------~~LyqlTw-k~ 169 (276)
.+|-||+.|.|. +.|+. .|.-| ..-.+.+.|.+..-.+ ..-.+ |+++++ -+++.... ..
T Consensus 67 v~~y~g~~F~p~s~~~kc~~la~-gG~~g--~fd~~~~~tn~~h~~~cd~snn----~v~~~~r~cd~~~~~~i~sndht 139 (344)
T KOG4532|consen 67 VEFYTGMTFTPGSFINKCVTLAD-GGASG--QFDLFACNTNDGHLYQCDVSNN----DVTLVKRYCDLKFPLNIASNDHT 139 (344)
T ss_pred EEeeecccccchHhhccccEEEe-ccccc--eeeeecccCcccceeeeccccc----chhhhhhhcccccceeeccCCcc
Confidence 457789888763 35553 23222 3445666665543222 22222 455543 24444432 45
Q ss_pred CEEEEEeCCCCcEEEEEe-cCCCCeeEEeeCCCEEEEECCCceE--EEEcCCCCcEEEEEEe--eeCCEeeeeeeeeEEE
Q 023864 170 KTGFIYDQNNLNKLEEFT-HQMKDGWGLATDGKVLFGSDGSSML--YQIDPQTLKVIRKDIV--RYKGREVRNLNELEFI 244 (276)
Q Consensus 170 ~~v~V~D~~tlk~i~~~~-~~~~EGWGLT~Dg~~L~vSDGS~~L--~viDp~t~~vi~~I~V--~~~g~pv~~lNELE~i 244 (276)
.++++.|....+..-.++ .. -....+++|++++.+-.-+.+| |-||-+.-.+++ |.+ +.++.-...++|
T Consensus 140 ~k~~~~~~~s~~~~~h~~~~~-~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~-~~~a~t~D~gF~~S~s~---- 213 (344)
T KOG4532|consen 140 GKTMVVSGDSNKFAVHNQNLT-QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN-IYEAPTSDHGFYNSFSE---- 213 (344)
T ss_pred eeEEEEecCcccceeeccccc-eeeeEEcCCCceEEEecCCCcceEEEeCCccceeee-eEecccCCCceeeeecc----
Confidence 677777777777665554 22 2455678899988765556666 556766666665 444 334443333332
Q ss_pred CCEEEEEeCCCCCeEEEEeCCCCcEEEEEEe
Q 023864 245 KGEVWANVWQVWPCIPYAYLQAFGSSLVYVT 275 (276)
Q Consensus 245 dG~lyANvw~s~d~I~vIDp~T~~v~l~~~~ 275 (276)
+...||-+.|. ..+.+-|....+...+++|
T Consensus 214 ~~~~FAv~~Qd-g~~~I~DVR~~~tpm~~~s 243 (344)
T KOG4532|consen 214 NDLQFAVVFQD-GTCAIYDVRNMATPMAEIS 243 (344)
T ss_pred CcceEEEEecC-CcEEEEEecccccchhhhc
Confidence 56799999999 9999999998777666654
No 291
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.69 E-value=1.2e+02 Score=33.66 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=29.6
Q ss_pred ceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEe
Q 023864 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN 144 (276)
Q Consensus 107 TQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~ 144 (276)
+.++.|+|.-.|+.|.| ++-+||+||.+..+-+++.
T Consensus 253 Vssvlfhp~q~lIlSns--EDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 253 VSSVLFHPHQDLILSNS--EDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred cceEEecCccceeEecC--CCccEEEEecccccceeee
Confidence 46899998767999999 8999999999887655543
No 292
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=77.62 E-value=8.2 Score=26.29 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=25.7
Q ss_pred CeeEEeeCCCEEEEECCCceEEEEcCCC---CcEEEEE
Q 023864 192 DGWGLATDGKVLFGSDGSSMLYQIDPQT---LKVIRKD 226 (276)
Q Consensus 192 EGWGLT~Dg~~L~vSDGS~~L~viDp~t---~~vi~~I 226 (276)
.-.++.-.|.++|++|+.+-|.++|-.+ -++++++
T Consensus 3 ~a~~v~v~g~yaYva~~~~Gl~IvDISnPs~P~~v~~~ 40 (42)
T PF08309_consen 3 DARDVAVSGNYAYVADGNNGLVIVDISNPSNPVLVGSY 40 (42)
T ss_pred eEEEEEEECCEEEEEeCCCCEEEEECCCCCCCEEEEEe
Confidence 3445777899999999999999998444 4444443
No 293
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=77.40 E-value=14 Score=36.76 Aligned_cols=111 Identities=14% Similarity=0.163 Sum_probs=66.3
Q ss_pred CCCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--C-C-EEEEEEeeCCEEEEEeCC
Q 023864 104 RAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--G-E-KLFQVTWLQKTGFIYDQN 178 (276)
Q Consensus 104 ~aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g-~-~LyqlTwk~~~v~V~D~~ 178 (276)
++-+++|+++|. ..+|.|++ =+.+|++||...++-...+... -++--+-+. | + -|..--=.+|+..|+|..
T Consensus 257 ~~SVEDLqWSptE~~vfaScS--~DgsIrIWDiRs~~~~~~~~~k--Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR 332 (440)
T KOG0302|consen 257 TKSVEDLQWSPTEDGVFASCS--CDGSIRIWDIRSGPKKAAVSTK--AHNSDVNVISWNRREPLLASGGDDGTLSIWDLR 332 (440)
T ss_pred ccchhhhccCCccCceEEeee--cCceEEEEEecCCCccceeEee--ccCCceeeEEccCCcceeeecCCCceEEEEEhh
Confidence 444689999987 46888888 7889999999988432222111 111111111 1 1 122222356788899998
Q ss_pred CCc---EEEEEecCCCCee---EEeeCCCEEEE-ECCCceEEEEcCCC
Q 023864 179 NLN---KLEEFTHQMKDGW---GLATDGKVLFG-SDGSSMLYQIDPQT 219 (276)
Q Consensus 179 tlk---~i~~~~~~~~EGW---GLT~Dg~~L~v-SDGS~~L~viDp~t 219 (276)
+++ ++++|.+- .... .-.|.....++ |-+.++|.++|...
T Consensus 333 ~~~~~~pVA~fk~H-k~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 333 QFKSGQPVATFKYH-KAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred hccCCCcceeEEec-cCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 775 56788754 2222 23444455555 44689999999653
No 294
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=77.01 E-value=41 Score=36.28 Aligned_cols=122 Identities=16% Similarity=0.144 Sum_probs=82.8
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCCEEEEEeCCCCcE
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNK 182 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~tlk~ 182 (276)
++=+-+|.|+.||..+.|+| -+..+.+|.++|++-.---.|+.- =+++.+. ++.+|.+--.++.+.++...+++.
T Consensus 251 ~~~V~~L~fS~~G~~LlSGG--~E~VLv~Wq~~T~~kqfLPRLgs~--I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~ 326 (792)
T KOG1963|consen 251 HDEVNSLSFSSDGAYLLSGG--REGVLVLWQLETGKKQFLPRLGSP--ILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI 326 (792)
T ss_pred ccccceeEEecCCceEeecc--cceEEEEEeecCCCcccccccCCe--eEEEEEcCCCCeEEEEecCceEEEEeccchhh
Confidence 44557999999987555777 577788999999982111134433 2455554 579999999999999999999988
Q ss_pred EEEEe---cC------CCCee--EEeeCC--CEEEEECC-CceEEEEcCCCCcEEEEEEeee
Q 023864 183 LEEFT---HQ------MKDGW--GLATDG--KVLFGSDG-SSMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 183 i~~~~---~~------~~EGW--GLT~Dg--~~L~vSDG-S~~L~viDp~t~~vi~~I~V~~ 230 (276)
..++. ++ ++++. |++=|. +.+.+ +| ...|.++|+-+-+.+.++.|.+
T Consensus 327 k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vl-n~~~g~vQ~ydl~td~~i~~~~v~~ 387 (792)
T KOG1963|consen 327 KSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVL-NGHPGHVQFYDLYTDSTIYKLQVCD 387 (792)
T ss_pred hhhccCccCCCccccccccccceeEEEcCCCCceee-cCCCceEEEEeccccceeeeEEEEe
Confidence 77764 21 11222 233233 33333 55 7789999999888888877753
No 295
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=76.86 E-value=3.7 Score=43.54 Aligned_cols=95 Identities=15% Similarity=0.174 Sum_probs=62.9
Q ss_pred EEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEE-eeCCEEEEEeCCCCcEEEE
Q 023864 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVT-WLQKTGFIYDQNNLNKLEE 185 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlT-wk~~~v~V~D~~tlk~i~~ 185 (276)
=|.|.|||++.++.| .+..+.+||+..|++....+--. |-+..+. +....+.+ --+.++-++|.+|++.+..
T Consensus 159 ~l~lsP~Gr~v~~g~--ed~tvki~d~~agk~~~ef~~~e---~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s 233 (825)
T KOG0267|consen 159 VLRLSPDGRWVASGG--EDNTVKIWDLTAGKLSKEFKSHE---GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISS 233 (825)
T ss_pred EEeecCCCceeeccC--Ccceeeeeccccccccccccccc---ccccccccCchhhhhccCCCCceeeeeccceeEEeec
Confidence 368899999999888 68999999999999875543111 1222332 22322322 2457788899999999987
Q ss_pred EecC--CCCeeEEeeCCCEEEEECC
Q 023864 186 FTHQ--MKDGWGLATDGKVLFGSDG 208 (276)
Q Consensus 186 ~~~~--~~EGWGLT~Dg~~L~vSDG 208 (276)
.... ...+-.+.+||+.++-.+.
T Consensus 234 ~~~~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 234 GKPETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred cCCccCCceeeeecCCceeeecCch
Confidence 7532 2334446778887776553
No 296
>COG1499 NMD3 NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]
Probab=76.57 E-value=54 Score=32.17 Aligned_cols=95 Identities=19% Similarity=0.164 Sum_probs=62.3
Q ss_pred CeEEEEeCCCCc----EEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEe---cCCCCeeEEeeCC
Q 023864 128 SSVRRVALETGK----VEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFT---HQMKDGWGLATDG 200 (276)
Q Consensus 128 S~I~~iDl~tgk----v~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~---~~~~EGWGLT~Dg 200 (276)
-++.-.|..+|+ +.-.+.+|+--=|.=+.+.++.+++++-.++.+.+.|+.|.+... ++ +...+|-.+..+-
T Consensus 222 ~~Lvg~d~~tgk~~yR~t~Svrip~~~~gDiV~~~~~~~~~v~~~~~~~~~~dl~t~e~~~-~~~~~~~~~~~~~~~~~~ 300 (355)
T COG1499 222 EKLVGRDRFTGKRVYRFTYSVRIPEFRPGDIVSVRGRQLVLVRSIGKGIVVLDLETGEPVE-ITWSVYKRNEGKVAVKEP 300 (355)
T ss_pred ceeEEEecCCCceEEEEEEEEECCCCCCCCEEEECCCeEEEEEEecCceEEEecccCCccc-cChhhcccCcceeeeccc
Confidence 345556656665 334446665433444555667999999999999999999995432 22 2223455566544
Q ss_pred ---CEEEEECCCceEEEEcCCCCcEE
Q 023864 201 ---KVLFGSDGSSMLYQIDPQTLKVI 223 (276)
Q Consensus 201 ---~~L~vSDGS~~L~viDp~t~~vi 223 (276)
+..++|+-.+.+.++|++|++..
T Consensus 301 ~~~~~~vvs~~~~~~~v~d~et~e~~ 326 (355)
T COG1499 301 RLKKAVVVSRDPSAIQVLDPETYEAR 326 (355)
T ss_pred cceEEEEEecCCCceEEEecceEEEE
Confidence 34567777778999999887653
No 297
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=76.39 E-value=50 Score=32.96 Aligned_cols=111 Identities=12% Similarity=0.140 Sum_probs=74.0
Q ss_pred CCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCc--E
Q 023864 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLN--K 182 (276)
Q Consensus 105 aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk--~ 182 (276)
.-+.-++|.+.+.+| |.+ -+-.|++||+++|+.+.+..-++.++....-- -.+|...-=-+..+-+|||.+.. .
T Consensus 261 ~~Vs~V~w~d~~v~y-S~S--wDHTIk~WDletg~~~~~~~~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 261 EPVSSVVWSDATVIY-SVS--WDHTIKVWDLETGGLKSTLTTNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred cceeeEEEcCCCceE-eec--ccceEEEEEeecccceeeeecCcceeEeeccc-ccceeeecCCCCceeecCCCCCCCce
Confidence 344677888667777 455 67899999999999888887777766433222 24666677778889999998763 2
Q ss_pred E-EEEecCCCCeeE----EeeCCCEEEEEC-CCceEEEEcCCCCc
Q 023864 183 L-EEFTHQMKDGWG----LATDGKVLFGSD-GSSMLYQIDPQTLK 221 (276)
Q Consensus 183 i-~~~~~~~~EGWG----LT~Dg~~L~vSD-GS~~L~viDp~t~~ 221 (276)
. .+|. + -.+|- -+|-..++++|= -++++.++|..+-+
T Consensus 337 v~~s~~-g-H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 337 VSQSLI-G-HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred eEEeee-c-chhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 2 2221 1 13343 345567778876 37788888876654
No 298
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=76.17 E-value=31 Score=37.81 Aligned_cols=159 Identities=13% Similarity=0.077 Sum_probs=91.8
Q ss_pred ceEEEEecCC-EEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEE----EeCCCCc
Q 023864 107 TQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFI----YDQNNLN 181 (276)
Q Consensus 107 TQGL~~~~dg-~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V----~D~~tlk 181 (276)
.+|++++--+ .+|...-...+=.|..+|-...|++....|- ++-+.-+...++.||-..|.-..=.| .|-++.+
T Consensus 1070 PEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLV-NPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrR 1148 (1289)
T KOG1214|consen 1070 PEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLV-NPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRR 1148 (1289)
T ss_pred ccceeeeeccceeeeeccccchhheeecCCceeeEEEeeccc-CcceEEeecccCceeeccccccCCcceeeccCCccce
Confidence 4799986433 4775433223333333444444555544433 23345555568999999996433222 3445556
Q ss_pred EEEEEecCCCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCCeEE
Q 023864 182 KLEEFTHQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWPCIP 260 (276)
Q Consensus 182 ~i~~~~~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d~I~ 260 (276)
++-.-....|.|.-+.+..+.|---| |++++.-+.|+-- -.++|.-. -..|+. +.-....+|-.-|.. |.|+
T Consensus 1149 ilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~-gRR~i~~~-LqYPF~----itsy~~~fY~TDWk~-n~vv 1221 (1289)
T KOG1214|consen 1149 ILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGT-GRRVIQNN-LQYPFS----ITSYADHFYHTDWKR-NGVV 1221 (1289)
T ss_pred EEeecccCCCCCceeCcccceeeEEecCCcceeEecCCCC-cchhhhhc-ccCcee----eeeccccceeecccc-CceE
Confidence 65554555567777777778773345 8999988887632 11222111 112222 222233499999999 9999
Q ss_pred EEeCCCCcEEEEE
Q 023864 261 YAYLQAFGSSLVY 273 (276)
Q Consensus 261 vIDp~T~~v~l~~ 273 (276)
-+|...++-.=.|
T Consensus 1222 sv~~~~~~~td~~ 1234 (1289)
T KOG1214|consen 1222 SVNKHSGQFTDEY 1234 (1289)
T ss_pred Eeecccccccccc
Confidence 9999887644333
No 299
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=75.88 E-value=44 Score=34.17 Aligned_cols=47 Identities=23% Similarity=0.300 Sum_probs=29.5
Q ss_pred eCCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCCCeeEEeeCCCEEEEEC
Q 023864 158 LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSD 207 (276)
Q Consensus 158 ~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~~L~vSD 207 (276)
+|.+||.. ..++++++|+.-- ...++.-+.+|..-|.--|..|.+-+
T Consensus 110 dG~~iy~s--~~~KvYvi~~~pp-~~~~i~~~i~ecg~l~l~~nvL~i~~ 156 (603)
T COG4880 110 DGERIYVS--VNGKVYVIDKNPP-LLETIDCPIPECGILALGGNVLAIGE 156 (603)
T ss_pred CCcEEEEE--eCCeEEEEcCCCc-hhhhcccCCccceEEEEcCcEEEEEE
Confidence 45789888 6899999996533 23344333446555665566665533
No 300
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=75.51 E-value=51 Score=34.12 Aligned_cols=99 Identities=16% Similarity=0.137 Sum_probs=72.4
Q ss_pred CCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEee--CCEEEEEeCCCCcEEEEEecC--CCCeeEEeeCCC
Q 023864 126 GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL--QKTGFIYDQNNLNKLEEFTHQ--MKDGWGLATDGK 201 (276)
Q Consensus 126 g~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk--~~~v~V~D~~tlk~i~~~~~~--~~EGWGLT~Dg~ 201 (276)
++..|..|+...|++..+..-+.+|=+.-...++++++.+.-- +.++-.++..+.+.+..+.-+ ...-.-+++||+
T Consensus 78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK 157 (541)
T ss_pred CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence 3467888999999999998878776666666667666555443 355666888998888888644 223334678999
Q ss_pred EEEEECCCceEEEEcCCCCcEEEEE
Q 023864 202 VLFGSDGSSMLYQIDPQTLKVIRKD 226 (276)
Q Consensus 202 ~L~vSDGS~~L~viDp~t~~vi~~I 226 (276)
.|.+. +.+|.++|-+|.+++.+.
T Consensus 158 ~l~~a--s~~ik~~~~~~kevv~~f 180 (541)
T KOG4547|consen 158 ILLTA--SRQIKVLDIETKEVVITF 180 (541)
T ss_pred EEEec--cceEEEEEccCceEEEEe
Confidence 98874 689999999999886543
No 301
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=75.49 E-value=21 Score=37.60 Aligned_cols=107 Identities=19% Similarity=0.327 Sum_probs=65.2
Q ss_pred CCCCce---EEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEE------eecCC---CceEE-EEEEe--CCEEEEEEe
Q 023864 103 PRAFTQ---GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAI------NQMEG---SYFGE-GLTLL--GEKLFQVTW 167 (276)
Q Consensus 103 ~~aFTQ---GL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~------~~l~~---~~FgE-Git~~--g~~LyqlTw 167 (276)
..++.+ +++|- |...+.|+|. +++.|.+||+...+...+ .+++- +-.|. -+.++ |.+||+-=
T Consensus 214 s~ti~ssvTvv~fk-De~tlaSaga-~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC- 290 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFK-DESTLASAGA-ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC- 290 (720)
T ss_pred cCceeeeeEEEEEe-ccceeeeccC-CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe-
Confidence 345545 67775 6666678885 799999999986543222 22331 22322 23333 46777643
Q ss_pred eCCEEEEEeCCCCcE--EEE--------EecCCCCeeEEeeCCCEEEE--ECCCceEEEEc
Q 023864 168 LQKTGFIYDQNNLNK--LEE--------FTHQMKDGWGLATDGKVLFG--SDGSSMLYQID 216 (276)
Q Consensus 168 k~~~v~V~D~~tlk~--i~~--------~~~~~~EGWGLT~Dg~~L~v--SDGS~~L~viD 216 (276)
.++.+|.||..++.+ ++. |.... -+.+||..|.- +|+-..+++++
T Consensus 291 tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks----~lSpd~~~l~SgSsd~~ayiw~vs 347 (720)
T KOG0321|consen 291 TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKS----ELSPDDCSLLSGSSDEQAYIWVVS 347 (720)
T ss_pred cCCcEEEEeccccCcCchhhccCcccceeeeee----ecCCCCceEeccCCCcceeeeeec
Confidence 499999999988754 222 22111 26678887766 55667777776
No 302
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=75.27 E-value=59 Score=31.67 Aligned_cols=112 Identities=10% Similarity=0.075 Sum_probs=74.8
Q ss_pred cCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEE---EEEeeCCEEEEEeC
Q 023864 101 HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLF---QVTWLQKTGFIYDQ 177 (276)
Q Consensus 101 hd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~Ly---qlTwk~~~v~V~D~ 177 (276)
|+...+ -..++.||....++| -+.++..||+++|++. ++.+-..+. --+...++-+| +..-.++++-.+|+
T Consensus 71 ~~~PvL--~v~WsddgskVf~g~--~Dk~~k~wDL~S~Q~~-~v~~Hd~pv-kt~~wv~~~~~~cl~TGSWDKTlKfWD~ 144 (347)
T KOG0647|consen 71 HDGPVL--DVCWSDDGSKVFSGG--CDKQAKLWDLASGQVS-QVAAHDAPV-KTCHWVPGMNYQCLVTGSWDKTLKFWDT 144 (347)
T ss_pred cCCCeE--EEEEccCCceEEeec--cCCceEEEEccCCCee-eeeecccce-eEEEEecCCCcceeEecccccceeeccc
Confidence 433444 678888886544555 5678999999999763 333333332 23444444333 44456789999999
Q ss_pred CCCcEEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCC
Q 023864 178 NNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQT 219 (276)
Q Consensus 178 ~tlk~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t 219 (276)
..-.++.++..| ..-|.+.---..+.|+-+...|-+++.++
T Consensus 145 R~~~pv~t~~LP-eRvYa~Dv~~pm~vVata~r~i~vynL~n 185 (347)
T KOG0647|consen 145 RSSNPVATLQLP-ERVYAADVLYPMAVVATAERHIAVYNLEN 185 (347)
T ss_pred CCCCeeeeeecc-ceeeehhccCceeEEEecCCcEEEEEcCC
Confidence 999999999887 34555554455778888888888888754
No 303
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=75.17 E-value=89 Score=30.81 Aligned_cols=160 Identities=9% Similarity=0.072 Sum_probs=97.0
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceE-EEEEEe-CCEEEEEEeeCCE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFG-EGLTLL-GEKLFQVTWLQKT 171 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~Fg-EGit~~-g~~LyqlTwk~~~ 171 (276)
++-.++.+ +. +.-+.|++.|.+.. .|. -+.+|.+||+.|..+-+. +..+.-+ ..+++. ++|.....-.+..
T Consensus 16 el~~tld~-~~--a~~~~Fs~~G~~lA-vGc-~nG~vvI~D~~T~~iar~--lsaH~~pi~sl~WS~dgr~LltsS~D~s 88 (405)
T KOG1273|consen 16 ELTHTLDN-PL--AECCQFSRWGDYLA-VGC-ANGRVVIYDFDTFRIARM--LSAHVRPITSLCWSRDGRKLLTSSRDWS 88 (405)
T ss_pred hhceeccC-Cc--cceEEeccCcceee-eec-cCCcEEEEEccccchhhh--hhccccceeEEEecCCCCEeeeecCCce
Confidence 34455555 23 67899998887664 332 567899999999764333 2222111 245554 4777778889999
Q ss_pred EEEEeCCCCcEEEEEecCCCCeeE--EeeCCC-EEEEEC--CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeE----
Q 023864 172 GFIYDQNNLNKLEEFTHQMKDGWG--LATDGK-VLFGSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELE---- 242 (276)
Q Consensus 172 v~V~D~~tlk~i~~~~~~~~EGWG--LT~Dg~-~L~vSD--GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE---- 242 (276)
+..+|.-....+++|.++ .-=|+ +.|-.+ ..+++- -+..|-.+++... +-+.+.++| .+|+-.
T Consensus 89 i~lwDl~~gs~l~rirf~-spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h---~~Lp~d~d~----dln~sas~~~ 160 (405)
T KOG1273|consen 89 IKLWDLLKGSPLKRIRFD-SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH---SVLPKDDDG----DLNSSASHGV 160 (405)
T ss_pred eEEEeccCCCceeEEEcc-CccceeeeccccCCeEEEEEecCCcEEEEecCCce---eeccCCCcc----cccccccccc
Confidence 999999999999999887 23455 444333 333343 3444444444222 223444333 233222
Q ss_pred EE--CCEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 243 FI--KGEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 243 ~i--dG~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
+. +.+||+.. .. ..+.++|.+|.+.+
T Consensus 161 fdr~g~yIitGt-sK-Gkllv~~a~t~e~v 188 (405)
T KOG1273|consen 161 FDRRGKYIITGT-SK-GKLLVYDAETLECV 188 (405)
T ss_pred ccCCCCEEEEec-Cc-ceEEEEecchheee
Confidence 11 33688887 45 78999999996543
No 304
>PRK10115 protease 2; Provisional
Probab=74.26 E-value=37 Score=35.75 Aligned_cols=109 Identities=13% Similarity=0.022 Sum_probs=62.0
Q ss_pred ceEEEEecCCE-EE--EEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEe-----eCCEEEEEeCC
Q 023864 107 TQGLLYAENDT-LF--ESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW-----LQKTGFIYDQN 178 (276)
Q Consensus 107 TQGL~~~~dg~-Ly--eStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTw-----k~~~v~V~D~~ 178 (276)
..++.++|||+ |. +.++.-+...|+++|+++|+.+.. .++..-+....+-+++.+|..+. +..+++..+..
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~-~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lg 207 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE-LLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIG 207 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc-cccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECC
Confidence 45678888876 32 344434566799999999975322 22322233233334566766654 33689999998
Q ss_pred CCcE--EEEEecCCCCeeE----EeeCCCEEEEE--CC-CceEEEEcC
Q 023864 179 NLNK--LEEFTHQMKDGWG----LATDGKVLFGS--DG-SSMLYQIDP 217 (276)
Q Consensus 179 tlk~--i~~~~~~~~EGWG----LT~Dg~~L~vS--DG-S~~L~viDp 217 (276)
|-.. .--+.-+ .+.+. .+.|++++++. ++ ++.++++|.
T Consensus 208 t~~~~d~lv~~e~-~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 208 TPASQDELVYEEK-DDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CChhHCeEEEeeC-CCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 8832 1112211 11122 34588887662 23 567888883
No 305
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=74.10 E-value=7.6 Score=38.91 Aligned_cols=90 Identities=17% Similarity=0.124 Sum_probs=49.0
Q ss_pred EEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEec
Q 023864 110 LLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTH 188 (276)
Q Consensus 110 L~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~ 188 (276)
+.++=| ..||.|.= =...|+.||...-+ +.+|-.+.|--|+-..+..+-+++-.+.+ .-++.+.+.++-=-
T Consensus 317 ilISmDDRFLYvs~W--LHGDirQYdIsDP~---n~kLtgQi~lGG~i~~~s~vkvl~~e~~~---~~~ea~~vKGrkl~ 388 (476)
T KOG0918|consen 317 ILISLDDRFLYVSNW--LHGDIRQYDISDPK---NPKLTGQIFLGGSIQKGSPVKVLEEEGLK---KQPEALYVKGRKLR 388 (476)
T ss_pred eEEeecCcEEEEEee--eecceeeeccCCCC---CcceEEEEEECcEeecCCceEEecccccc---CCCccceecCcccc
Confidence 344444 56999855 46679999876432 11222233333444444444445433222 33334444333212
Q ss_pred CCCCeeEEeeCCCEEEEEC
Q 023864 189 QMKDGWGLATDGKVLFGSD 207 (276)
Q Consensus 189 ~~~EGWGLT~Dg~~L~vSD 207 (276)
+.|+=..|+-||++|||++
T Consensus 389 GGPQMlQLSLDGKRLYVt~ 407 (476)
T KOG0918|consen 389 GGPQMLQLSLDGKRLYVTN 407 (476)
T ss_pred CCceeEEeccCCcEEEEEc
Confidence 2356667999999999987
No 306
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=73.96 E-value=30 Score=36.31 Aligned_cols=127 Identities=19% Similarity=0.121 Sum_probs=78.6
Q ss_pred EEEEEcCCCCCCeEEEEeCCCCcEEEEe----ecCCCceE------EEEEEeCC-EEEEEEeeCCEEEEEeCCCCcEEEE
Q 023864 117 TLFESTGLYGRSSVRRVALETGKVEAIN----QMEGSYFG------EGLTLLGE-KLFQVTWLQKTGFIYDQNNLNKLEE 185 (276)
Q Consensus 117 ~LyeStG~yg~S~I~~iDl~tgkv~~~~----~l~~~~Fg------EGit~~g~-~LyqlTwk~~~v~V~D~~tlk~i~~ 185 (276)
.|+. +|. ..+.|-.||+.+......+ .++.++++ ..+.+.|+ -=..+--.+|.+++||..+-+++-.
T Consensus 188 gLla-~Gt-~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~ 265 (703)
T KOG2321|consen 188 GLLA-CGT-EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV 265 (703)
T ss_pred ceEE-ecc-cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee
Confidence 3554 441 5889999999886554444 34445553 45566664 3344455789999999999887654
Q ss_pred EecC----C-CCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECC--EEEEEe
Q 023864 186 FTHQ----M-KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG--EVWANV 252 (276)
Q Consensus 186 ~~~~----~-~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG--~lyANv 252 (276)
-.+. + .=-|- ..|++.-++|--+..+-++|+.|++....|.-+. .+|..+.+-| -+|.++
T Consensus 266 kdh~~e~pi~~l~~~-~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~------~lND~C~~p~sGm~f~An 332 (703)
T KOG2321|consen 266 KDHGYELPIKKLDWQ-DTDQQNKVVSMDKRILKIWDECTGKPMASIEPTS------DLNDFCFVPGSGMFFTAN 332 (703)
T ss_pred cccCCccceeeeccc-ccCCCceEEecchHHhhhcccccCCceeeccccC------CcCceeeecCCceEEEec
Confidence 3321 0 11121 2244544555557788889999998877665543 5888887743 455443
No 307
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=73.50 E-value=4.9 Score=42.67 Aligned_cols=120 Identities=18% Similarity=0.183 Sum_probs=75.4
Q ss_pred CceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEe--------ecCCCceEEEE----EE-----eC---------
Q 023864 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN--------QMEGSYFGEGL----TL-----LG--------- 159 (276)
Q Consensus 106 FTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~--------~l~~~~FgEGi----t~-----~g--------- 159 (276)
-.+-|.|+.+..|+. +|- -...|.+||++.++.+++. .+.=+||||=. +. ++
T Consensus 72 pIeSl~f~~~E~Lla-ags-asgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~ 149 (825)
T KOG0267|consen 72 PIESLTFDTSERLLA-AGS-ASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHT 149 (825)
T ss_pred cceeeecCcchhhhc-ccc-cCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceee
Confidence 346788887656653 551 3348999999998865543 23345565533 11 11
Q ss_pred --CEE-------------EEEEeeC-CEEEEEeCCCCcEEEEEecCCCCeeEEeeCCC---EEEEECC-CceEEEEcCCC
Q 023864 160 --EKL-------------FQVTWLQ-KTGFIYDQNNLNKLEEFTHQMKDGWGLATDGK---VLFGSDG-SSMLYQIDPQT 219 (276)
Q Consensus 160 --~~L-------------yqlTwk~-~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~---~L~vSDG-S~~L~viDp~t 219 (276)
++. |+..-.+ +.+-++|..-.+.+.+|+.- ||=+...|++ .|..+-| ...|.|+|.+|
T Consensus 150 ~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~--e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 150 YKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSH--EGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET 227 (825)
T ss_pred ecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccc--cccccccccCchhhhhccCCCCceeeeeccce
Confidence 011 2222233 77888888888888888743 6777777664 3444434 55899999999
Q ss_pred CcEEEEEEee
Q 023864 220 LKVIRKDIVR 229 (276)
Q Consensus 220 ~~vi~~I~V~ 229 (276)
|+++....-.
T Consensus 228 fe~I~s~~~~ 237 (825)
T KOG0267|consen 228 FEVISSGKPE 237 (825)
T ss_pred eEEeeccCCc
Confidence 9998766543
No 308
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=73.32 E-value=38 Score=33.93 Aligned_cols=128 Identities=18% Similarity=0.182 Sum_probs=75.3
Q ss_pred EEEEecCCCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCC-------cEEEEeecCCC----------ceEEEEEE
Q 023864 96 VNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETG-------KVEAINQMEGS----------YFGEGLTL 157 (276)
Q Consensus 96 v~~~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tg-------kv~~~~~l~~~----------~FgEGit~ 157 (276)
++-.=||+++. .-+.|.++.. .+.++| |+..|+.|-.+.+ +|.-.-.|..+ +=||=++-
T Consensus 6 ~ei~wH~~~pv-~s~dfq~n~~~~laT~G--~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLAS 82 (434)
T KOG1009|consen 6 IEISWHDHEPV-YSVDFQKNSLNKLATAG--GDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLAS 82 (434)
T ss_pred eEEEecCCCce-EEEEeccCcccceeccc--CccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeee
Confidence 44445666666 5677776644 667777 8999999865432 33222222211 11333333
Q ss_pred eCCEEEEEEeeCCEEEEEeCCC--------CcEEEEEecCCCCeeEEe--eCCCEEEEECCCceEEEEcCCCCcEEEEE
Q 023864 158 LGEKLFQVTWLQKTGFIYDQNN--------LNKLEEFTHQMKDGWGLA--TDGKVLFGSDGSSMLYQIDPQTLKVIRKD 226 (276)
Q Consensus 158 ~g~~LyqlTwk~~~v~V~D~~t--------lk~i~~~~~~~~EGWGLT--~Dg~~L~vSDGS~~L~viDp~t~~vi~~I 226 (276)
-+|.-=++-|+.+.+-+.|.++ ..+.+....-..|-+-|+ +|+..+..+-+++.++.+|...+++....
T Consensus 83 g~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~ 161 (434)
T KOG1009|consen 83 GGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAIL 161 (434)
T ss_pred cCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeec
Confidence 3444455567766555545555 223333321123555554 67788888889999999999999886544
No 309
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.41 E-value=48 Score=31.93 Aligned_cols=103 Identities=14% Similarity=0.023 Sum_probs=68.2
Q ss_pred CEEEEEEeeCCEEEEEeCCCCcEEEEEecC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeee
Q 023864 160 EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNL 238 (276)
Q Consensus 160 ~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~l 238 (276)
..+..+--.++++..+|+.+.+.+-+--.+ .-|+=++- -|+.+++.--+..|||+|.+|+...-....-+ .++--
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~---~vk~~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE---TVKVR 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh---hhccc
Confidence 466667778999999999999988765443 23555533 36677776678999999999985543322211 11111
Q ss_pred eeeEEECCEEEEEeCCCCCeEEEEeCCCCc
Q 023864 239 NELEFIKGEVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 239 NELE~idG~lyANvw~s~d~I~vIDp~T~~ 268 (276)
-.+.+..|-||..- .+ .+..++||.|.+
T Consensus 99 a~~d~~~glIycgs-hd-~~~yalD~~~~~ 126 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGS-HD-GNFYALDPKTYG 126 (354)
T ss_pred eEEcCCCceEEEec-CC-CcEEEecccccc
Confidence 12445577788776 44 678888888854
No 310
>PF13964 Kelch_6: Kelch motif
Probab=72.34 E-value=7.6 Score=26.18 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=27.2
Q ss_pred EEEEecCCEEEEEcCCCC----CCeEEEEeCCCCcEEEEeecC
Q 023864 109 GLLYAENDTLFESTGLYG----RSSVRRVALETGKVEAINQME 147 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg----~S~I~~iDl~tgkv~~~~~l~ 147 (276)
+++.. +++||+-.|..+ .+.+.+||++|++-..-.+++
T Consensus 6 s~v~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 6 SAVVV-GGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred EEEEE-CCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence 34444 579999888655 488999999999765544444
No 311
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=72.00 E-value=44 Score=32.60 Aligned_cols=99 Identities=17% Similarity=0.107 Sum_probs=66.8
Q ss_pred EEEEcCCCCCCeEEEEeCCCCcEEEEeecC---CCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecC----C
Q 023864 118 LFESTGLYGRSSVRRVALETGKVEAINQME---GSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ----M 190 (276)
Q Consensus 118 LyeStG~yg~S~I~~iDl~tgkv~~~~~l~---~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~----~ 190 (276)
++.--|. .-.+|++.|+..-+.-....++ ...=..+|+..|-.+--...|+--+-+||..+.+++.++.-+ .
T Consensus 150 ~LafPg~-k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~ 228 (346)
T KOG2111|consen 150 LLAFPGF-KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRAD 228 (346)
T ss_pred EEEcCCC-ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchhe
Confidence 4444443 4466777777654431111122 234456777778888888888888999999999999999743 1
Q ss_pred CCeeEEeeCCCEEEEECCCceEEEEcC
Q 023864 191 KDGWGLATDGKVLFGSDGSSMLYQIDP 217 (276)
Q Consensus 191 ~EGWGLT~Dg~~L~vSDGS~~L~viDp 217 (276)
-+-.+++||..+|-+|--..+|+++-.
T Consensus 229 iy~iaFSp~~s~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 229 IYCIAFSPNSSWLAVSSDKGTLHIFSL 255 (346)
T ss_pred EEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence 245678899999988655566766643
No 312
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=71.67 E-value=74 Score=28.32 Aligned_cols=125 Identities=11% Similarity=0.133 Sum_probs=83.2
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC----------CceEEEEEEeCCEEE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG----------SYFGEGLTLLGEKLF 163 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~----------~~FgEGit~~g~~Ly 163 (276)
+.++++..+..+. .+.|. ++.++.++ ++....+|+.++....-..++. ....-++...++.-|
T Consensus 130 ~~~ke~~lp~~~~--~i~~~-~~~i~v~~----~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 202 (275)
T PF00780_consen 130 KLLKEISLPDPPS--SIAFL-GNKICVGT----SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEF 202 (275)
T ss_pred ceeEEEEcCCCcE--EEEEe-CCEEEEEe----CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceE
Confidence 6888888865555 88888 46787764 4678889999887755443332 234556666675566
Q ss_pred EEEeeCCEEEEEeCCCCcEE-EEEecC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEee
Q 023864 164 QVTWLQKTGFIYDQNNLNKL-EEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVR 229 (276)
Q Consensus 164 qlTwk~~~v~V~D~~tlk~i-~~~~~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~ 229 (276)
.+.. ++.++.+|.+.-..- .++.-+ .+...++ ...+|++-. ++.|-+++..+++.+.+|...
T Consensus 203 Ll~~-~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~--~~pyli~~~-~~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 203 LLCY-DNIGVFVNKNGEPSRKSTIQWSSAPQSVAY--SSPYLIAFS-SNSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred EEEe-cceEEEEcCCCCcCcccEEEcCCchhEEEE--ECCEEEEEC-CCEEEEEECcCCcEEEEEECC
Confidence 6664 667777887544332 344433 2454444 455777743 366999999999998888754
No 313
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=71.49 E-value=16 Score=40.09 Aligned_cols=69 Identities=14% Similarity=0.095 Sum_probs=56.2
Q ss_pred EEEEEeeCCEEEEEeCCCCcEEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeee
Q 023864 162 LFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 162 LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~ 230 (276)
-...-...+.+..||.++.+..+...+..++--=+..+++.|+..|...+|...||.++++++++....
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs 217 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS 217 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccc
Confidence 334444567788899999999999888743433378899999999999999999999999999988754
No 314
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=71.27 E-value=25 Score=36.35 Aligned_cols=129 Identities=19% Similarity=0.253 Sum_probs=78.3
Q ss_pred EEEEEEecCCCCCc-eEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEee----
Q 023864 94 QVVNEFPHDPRAFT-QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL---- 168 (276)
Q Consensus 94 ~Vv~~~Phd~~aFT-QGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk---- 168 (276)
....++++.+..+. .=.+++++|+||.-. ....+.+++..+++++-...+- +.|.-.+...+ .|..||+
T Consensus 23 ~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~---~~~~v~i~~~~~~~~~lt~~~~-~~~~L~fSP~g--~yL~T~e~~~i 96 (566)
T KOG2315|consen 23 DAVTVFEQNKTSRPCNVFAYSNNGRLFAYS---DNQVVKVFEIATLKVVLCVELK-KTYDLLFSPKG--NYLLTWEPWAI 96 (566)
T ss_pred ccccccccCCCCCcceeEEEcCCCcEEEEE---cCCeEEEEEccCCcEEEEeccc-eeeeeeecccc--ccccccccccc
Confidence 34445555433443 456778889987421 2357888999999766666555 77765555444 5677774
Q ss_pred --CCE-----EEEEeCCCCcEEEEEecCCCCeeEEee-CCCEEEEECCCceEEEEcCCCCcEE-EEEEe
Q 023864 169 --QKT-----GFIYDQNNLNKLEEFTHQMKDGWGLAT-DGKVLFGSDGSSMLYQIDPQTLKVI-RKDIV 228 (276)
Q Consensus 169 --~~~-----v~V~D~~tlk~i~~~~~~~~EGWGLT~-Dg~~L~vSDGS~~L~viDp~t~~vi-~~I~V 228 (276)
++. +.+||.+|....-.|.-.+.-||-+.. +.+.|..=.-++.++|+|+.+|+.+ +++.+
T Consensus 97 ~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~ 165 (566)
T KOG2315|consen 97 YGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSV 165 (566)
T ss_pred ccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeec
Confidence 333 348888884333444433567897543 2233333334789999999998765 34443
No 315
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=71.11 E-value=11 Score=24.31 Aligned_cols=29 Identities=10% Similarity=0.038 Sum_probs=25.0
Q ss_pred CEEEEEEeeCCEEEEEeCCCCcEEEEEecC
Q 023864 160 EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ 189 (276)
Q Consensus 160 ~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~ 189 (276)
+++|+. -.++.++.+|++|.+++-+++.+
T Consensus 1 ~~v~~~-~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 1 GRVYVG-TPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp TEEEEE-TTTSEEEEEETTTTSEEEEEESS
T ss_pred CEEEEe-CCCCEEEEEECCCCCEEEeeeCC
Confidence 467777 67899999999999999999865
No 316
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=70.89 E-value=44 Score=32.90 Aligned_cols=102 Identities=15% Similarity=0.175 Sum_probs=65.5
Q ss_pred EEEEecCC-EEEEEcCCCCCCeEEEEeCCC---CcE------------EEEeecCCCceEEEEEEeCCEEEEEE-eeCCE
Q 023864 109 GLLYAEND-TLFESTGLYGRSSVRRVALET---GKV------------EAINQMEGSYFGEGLTLLGEKLFQVT-WLQKT 171 (276)
Q Consensus 109 GL~~~~dg-~LyeStG~yg~S~I~~iDl~t---gkv------------~~~~~l~~~~FgEGit~~g~~LyqlT-wk~~~ 171 (276)
-..|.||- .+.++.- ..++|++|.+.. |+. .+++.++-- -.|++ |+--|.++ -.+.+
T Consensus 137 ~V~FapDc~s~vv~~~--~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i--~iGiA--~~~k~imsas~dt~ 210 (420)
T KOG2096|consen 137 RVVFAPDCKSVVVSVK--RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDII--NIGIA--GNAKYIMSASLDTK 210 (420)
T ss_pred EEEECCCcceEEEEEc--cCCEEEEEEeeecccCCCCcccccccccccchhcccceE--EEeec--CCceEEEEecCCCc
Confidence 46778773 3555544 567888876532 221 111122211 13444 55555555 46678
Q ss_pred EEEEeCCCCcEEEEEecC--CCCeeEEeeCCCEEEEECCCceEEEEcC
Q 023864 172 GFIYDQNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDP 217 (276)
Q Consensus 172 v~V~D~~tlk~i~~~~~~--~~EGWGLT~Dg~~L~vSDGS~~L~viDp 217 (276)
+.+||.. .+.++++... ...-.+++|||..+.++--+..|.++.|
T Consensus 211 i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~ 257 (420)
T KOG2096|consen 211 ICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEP 257 (420)
T ss_pred EEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEE
Confidence 9999998 9999999754 3466689999999998887888877764
No 317
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=70.13 E-value=48 Score=33.08 Aligned_cols=54 Identities=19% Similarity=0.260 Sum_probs=33.1
Q ss_pred EEEEeCCEEEEEEeeCCEEEEEeCC--CCcEEEEEe--cC-CCCeeE----EeeCCCEEEEECCCc
Q 023864 154 GLTLLGEKLFQVTWLQKTGFIYDQN--NLNKLEEFT--HQ-MKDGWG----LATDGKVLFGSDGSS 210 (276)
Q Consensus 154 Git~~g~~LyqlTwk~~~v~V~D~~--tlk~i~~~~--~~-~~EGWG----LT~Dg~~L~vSDGS~ 210 (276)
|++..++.+|+.|-..- -.++.. +++..+.+- .| .+.+|| +.+|| +||+|=|+.
T Consensus 135 ~~a~~~~~~~~~n~~~~--~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG-~Lyvs~G~~ 197 (399)
T COG2133 135 GISEPGGGLYVANRVAI--GRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDG-KLYVTTGSN 197 (399)
T ss_pred EEEeecCCceEEEEEEE--EEcCCCccccccccEEeecCCCCCCcCcccEEECCCC-cEEEEeCCC
Confidence 66777888998885443 334422 232222221 22 236787 78999 999988865
No 318
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=69.27 E-value=1.2e+02 Score=29.68 Aligned_cols=166 Identities=14% Similarity=0.083 Sum_probs=96.5
Q ss_pred eeEEEEEEecCCCCCceEEEEecC-C-EEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeC
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAEN-D-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ 169 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~d-g-~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~ 169 (276)
+-++.+---||...- -+-+.+. . .++ -||- -+-.|+.||+..-+.+.++.||++.|+.- +. ..+-++.--+
T Consensus 103 S~Q~~~v~~Hd~pvk--t~~wv~~~~~~cl-~TGS-WDKTlKfWD~R~~~pv~t~~LPeRvYa~D--v~-~pm~vVata~ 175 (347)
T KOG0647|consen 103 SGQVSQVAAHDAPVK--TCHWVPGMNYQCL-VTGS-WDKTLKFWDTRSSNPVATLQLPERVYAAD--VL-YPMAVVATAE 175 (347)
T ss_pred CCCeeeeeeccccee--EEEEecCCCccee-Eecc-cccceeecccCCCCeeeeeeccceeeehh--cc-CceeEEEecC
Confidence 344555556765444 3444432 1 233 4775 45689999999999999999999988543 33 3455555567
Q ss_pred CEEEEEeCCCC-cEEEEEe----cCCCCeeEEeeCCC-EEEE-ECCCceEEEEcCCCCcEEEEEEeeeC---CE-eeeee
Q 023864 170 KTGFIYDQNNL-NKLEEFT----HQMKDGWGLATDGK-VLFG-SDGSSMLYQIDPQTLKVIRKDIVRYK---GR-EVRNL 238 (276)
Q Consensus 170 ~~v~V~D~~tl-k~i~~~~----~~~~EGWGLT~Dg~-~L~v-SDGS~~L~viDp~t~~vi~~I~V~~~---g~-pv~~l 238 (276)
+.+.+|+...- .+.+++. ++ ....++-.|++ .++. -+|--.|.-||+..-+.-=++..... .. .|+-.
T Consensus 176 r~i~vynL~n~~te~k~~~SpLk~Q-~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaV 254 (347)
T KOG0647|consen 176 RHIAVYNLENPPTEFKRIESPLKWQ-TRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAV 254 (347)
T ss_pred CcEEEEEcCCCcchhhhhcCcccce-eeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEe
Confidence 88889998433 2333332 22 23444445543 2333 34777888888753222112222211 11 36778
Q ss_pred eeeEEECCE-EEEEeCCCCCeEEEEeCCC
Q 023864 239 NELEFIKGE-VWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 239 NELE~idG~-lyANvw~s~d~I~vIDp~T 266 (276)
|++.+.--+ .+|.+..+ .....-|-+.
T Consensus 255 Nsi~FhP~hgtlvTaGsD-Gtf~FWDkda 282 (347)
T KOG0647|consen 255 NSIAFHPVHGTLVTAGSD-GTFSFWDKDA 282 (347)
T ss_pred cceEeecccceEEEecCC-ceEEEecchh
Confidence 888877543 56777555 6777666655
No 319
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=69.25 E-value=9 Score=23.30 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=21.0
Q ss_pred CCEEEEECCCceEEEEcCCCCcEEE
Q 023864 200 GKVLFGSDGSSMLYQIDPQTLKVIR 224 (276)
Q Consensus 200 g~~L~vSDGS~~L~viDp~t~~vi~ 224 (276)
+..+|+.+....|+.+|+++++++=
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEE
Confidence 3478898889999999999998764
No 320
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=69.19 E-value=24 Score=38.77 Aligned_cols=100 Identities=17% Similarity=0.225 Sum_probs=71.3
Q ss_pred CCCeEEEEeCCCCcEEEEeecCCCceEEEEEE--eCCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCCCeeEEeeCCCEE
Q 023864 126 GRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVL 203 (276)
Q Consensus 126 g~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~--~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~~L 203 (276)
=+..+..+|+.+++..+...+... |+++ .|++..-+--..|+|++.|+++++.+.+|..-.+.=-.+.-.| .|
T Consensus 155 ~Q~~li~~Dl~~~~e~r~~~v~a~----~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~G-Nl 229 (1118)
T KOG1275|consen 155 LQEKLIHIDLNTEKETRTTNVSAS----GVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQG-NL 229 (1118)
T ss_pred hhhheeeeecccceeeeeeeccCC----ceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccC-Ce
Confidence 588899999999999888887764 3554 5789999999999999999999999999974310101122233 44
Q ss_pred EEECC-C---------ceEEEEcCCCCcEEEEEEeee
Q 023864 204 FGSDG-S---------SMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 204 ~vSDG-S---------~~L~viDp~t~~vi~~I~V~~ 230 (276)
.+|-| | .-|-|.|..+++.+.-|.+..
T Consensus 230 LitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~ 266 (1118)
T KOG1275|consen 230 LITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY 266 (1118)
T ss_pred EEEeecccccccccccchhhhhhhhhhhccCCccccc
Confidence 45555 2 346778888877766666643
No 321
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=68.87 E-value=1.1e+02 Score=29.02 Aligned_cols=141 Identities=12% Similarity=0.067 Sum_probs=74.7
Q ss_pred CCCCeEEEEeCCCCcEEEEee----cCCCceE----------------------EEEEEeC-CEEEEEEeeCCEEEEEeC
Q 023864 125 YGRSSVRRVALETGKVEAINQ----MEGSYFG----------------------EGLTLLG-EKLFQVTWLQKTGFIYDQ 177 (276)
Q Consensus 125 yg~S~I~~iDl~tgkv~~~~~----l~~~~Fg----------------------EGit~~g-~~LyqlTwk~~~v~V~D~ 177 (276)
.-++.+..+|++||+++.+-. ++...+- -.+...+ +.+.+---.-+.++++|+
T Consensus 93 i~d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~ 172 (299)
T PF14269_consen 93 ILDDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDP 172 (299)
T ss_pred EecceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEEEEecccCEEEEEEC
Confidence 346788999999999987652 1111111 0112222 344455555688999999
Q ss_pred CCCcEEEEEecCCC-----Ce--eEEee----------CCCEEEEEC----------CCceEEEEcCCCCcEEEEEEee-
Q 023864 178 NNLNKLEEFTHQMK-----DG--WGLAT----------DGKVLFGSD----------GSSMLYQIDPQTLKVIRKDIVR- 229 (276)
Q Consensus 178 ~tlk~i~~~~~~~~-----EG--WGLT~----------Dg~~L~vSD----------GS~~L~viDp~t~~vi~~I~V~- 229 (276)
.|.+++-++.=+.+ ++ |.-=+ ++..++.-| +...+..+|+++.++.-.-...
T Consensus 173 ~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~ 252 (299)
T PF14269_consen 173 STGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSD 252 (299)
T ss_pred CCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeec
Confidence 99988876631100 01 22111 121222222 2446667777755443222211
Q ss_pred -e-------CCEeeeeeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEEEEE
Q 023864 230 -Y-------KGREVRNLNELEFIKGEVWANVWQVWPCIPYAYLQAFGSSLVY 273 (276)
Q Consensus 230 -~-------~g~pv~~lNELE~idG~lyANvw~s~d~I~vIDp~T~~v~l~~ 273 (276)
. .|.... ..||.+++.=... .++.-+|++- +++.-+
T Consensus 253 ~~~~~~s~~~G~~Q~------L~nGn~li~~g~~-g~~~E~~~~G-~vv~~~ 296 (299)
T PF14269_consen 253 HPDGFYSPSQGSAQR------LPNGNVLIGWGNN-GRISEFTPDG-EVVWEA 296 (299)
T ss_pred CCCcccccCCCcceE------CCCCCEEEecCCC-ceEEEECCCC-CEEEEE
Confidence 0 121111 2268888887777 8899888865 666544
No 322
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.78 E-value=87 Score=32.78 Aligned_cols=136 Identities=16% Similarity=0.185 Sum_probs=70.5
Q ss_pred EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEE-------eeCCEEEEEeCCC--CcEE-----
Q 023864 118 LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVT-------WLQKTGFIYDQNN--LNKL----- 183 (276)
Q Consensus 118 LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlT-------wk~~~v~V~D~~t--lk~i----- 183 (276)
||-+.| .+..|+..|.+.||++..-++....=-.-++.+ .+.-||| --++.+|.||+.- ..+|
T Consensus 348 il~~~~--~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d-~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~ 424 (644)
T KOG2395|consen 348 ILMDGG--EQDKLYKLDIERGKIVEEWKFEDDINMVDITPD-FKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS 424 (644)
T ss_pred EeeCCC--CcCcceeeecccceeeeEeeccCCcceeeccCC-cchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence 555444 789999999999999888776654111111111 1222222 2367888899752 2122
Q ss_pred EEEecCC-CCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECC-EEEEEeCCCCCeEE
Q 023864 184 EEFTHQM-KDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG-EVWANVWQVWPCIP 260 (276)
Q Consensus 184 ~~~~~~~-~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG-~lyANvw~s~d~I~ 260 (276)
++|.... -...+-|.+|...+.|. |. |...|- .++.-++ ...--|.||.++. .-.|| .|.|.|= ..++
T Consensus 425 kqy~~k~nFsc~aTT~sG~IvvgS~~Gd--IRLYdr-i~~~AKT-AlPgLG~~I~hVd--vtadGKwil~Tc~---tyLl 495 (644)
T KOG2395|consen 425 KQYSTKNNFSCFATTESGYIVVGSLKGD--IRLYDR-IGRRAKT-ALPGLGDAIKHVD--VTADGKWILATCK---TYLL 495 (644)
T ss_pred cccccccccceeeecCCceEEEeecCCc--EEeehh-hhhhhhh-cccccCCceeeEE--eeccCcEEEEecc---cEEE
Confidence 1222211 13345566777777787 44 444442 2211111 1111234444432 11245 4888883 6788
Q ss_pred EEeCC
Q 023864 261 YAYLQ 265 (276)
Q Consensus 261 vIDp~ 265 (276)
.||+.
T Consensus 496 Li~t~ 500 (644)
T KOG2395|consen 496 LIDTL 500 (644)
T ss_pred EEEEe
Confidence 88864
No 323
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=68.72 E-value=1.5e+02 Score=30.57 Aligned_cols=153 Identities=14% Similarity=0.078 Sum_probs=98.9
Q ss_pred eEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEe
Q 023864 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFT 187 (276)
Q Consensus 108 QGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~ 187 (276)
--|-+.++|+-+.|.| -+..+..||.-+|++.+..++-..+ +--+.+.++.=|+.---++.++||-..--+++++|.
T Consensus 280 ~slKWnk~G~yilS~~--vD~ttilwd~~~g~~~q~f~~~s~~-~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~ 356 (524)
T KOG0273|consen 280 FSLKWNKKGTYILSGG--VDGTTILWDAHTGTVKQQFEFHSAP-ALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFI 356 (524)
T ss_pred EEEEEcCCCCEEEecc--CCccEEEEeccCceEEEeeeeccCC-ccceEEecCceEeecCCCceEEEEEecCCCcceeee
Confidence 3677777787677777 6778899999999998887776653 223444567777777778888888888888888886
Q ss_pred cCCCCeeEEeeC--CCEEEE-EC-CCceEEEEcCCC----C----cEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCC
Q 023864 188 HQMKDGWGLATD--GKVLFG-SD-GSSMLYQIDPQT----L----KVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQV 255 (276)
Q Consensus 188 ~~~~EGWGLT~D--g~~L~v-SD-GS~~L~viDp~t----~----~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s 255 (276)
--.+|=-+|-+| |..|-- || |+-+|+-+--.+ + |.+-+|.=...|.-..++| +|...+.+-..
T Consensus 357 GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~-----~~~~l~sas~d 431 (524)
T KOG0273|consen 357 GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPN-----MNLMLASASFD 431 (524)
T ss_pred cccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCc-----CCceEEEeecC
Confidence 333455566665 665554 44 565665543222 1 1232333222333344565 56666666666
Q ss_pred CCeEEEEeCCCCcE
Q 023864 256 WPCIPYAYLQAFGS 269 (276)
Q Consensus 256 ~d~I~vIDp~T~~v 269 (276)
..|.+-|.+.|..
T Consensus 432 -stV~lwdv~~gv~ 444 (524)
T KOG0273|consen 432 -STVKLWDVESGVP 444 (524)
T ss_pred -CeEEEEEccCCce
Confidence 8899999998543
No 324
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=68.58 E-value=38 Score=38.00 Aligned_cols=112 Identities=17% Similarity=0.180 Sum_probs=71.5
Q ss_pred CCceEEEEe--c-CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEE--eCCEEEEEEeeCCEEEEEeCCC
Q 023864 105 AFTQGLLYA--E-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVTWLQKTGFIYDQNN 179 (276)
Q Consensus 105 aFTQGL~~~--~-dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~--~g~~LyqlTwk~~~v~V~D~~t 179 (276)
+---|+.++ + .|.|+. +| +-..|++||.+..++.+.++.+..--...++- +++.++++-.-+|.+-+||...
T Consensus 1164 ~r~~~~v~dWqQ~~G~Ll~-tG--d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~ 1240 (1387)
T KOG1517|consen 1164 ARGTGLVVDWQQQSGHLLV-TG--DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRM 1240 (1387)
T ss_pred CCCCCeeeehhhhCCeEEe-cC--CeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeeccc
Confidence 333456554 1 277885 66 57889999999999999988886544444443 3568999999999999999754
Q ss_pred CcE---EEEEe-cCCCCe---eEEeeCCC-EEEEECCCceEEEEcCCC
Q 023864 180 LNK---LEEFT-HQMKDG---WGLATDGK-VLFGSDGSSMLYQIDPQT 219 (276)
Q Consensus 180 lk~---i~~~~-~~~~EG---WGLT~Dg~-~L~vSDGS~~L~viDp~t 219 (276)
-.. +-... +...|+ .-|-..|- .|+-.-....|+++|+..
T Consensus 1241 a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1241 APPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred CCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEeccc
Confidence 332 22221 111222 22334443 354444567899999876
No 325
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=68.43 E-value=32 Score=34.61 Aligned_cols=146 Identities=12% Similarity=0.111 Sum_probs=93.6
Q ss_pred ceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEE--EeecCCCceEEEEEEe-CCEEEEEEeeCCEEEEEeCCCCcEE
Q 023864 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEA--INQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNKL 183 (276)
Q Consensus 107 TQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~--~~~l~~~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~tlk~i 183 (276)
+.++.++.+|+..+|+- +.-.|.+|++.-.-|.. .+. ....- ++++. +|--|+.--.++++-|+|-.--+..
T Consensus 141 Vr~m~ws~~g~wmiSgD--~gG~iKyWqpnmnnVk~~~ahh-~eaIR--dlafSpnDskF~t~SdDg~ikiWdf~~~kee 215 (464)
T KOG0284|consen 141 VRTMKWSHNGTWMISGD--KGGMIKYWQPNMNNVKIIQAHH-AEAIR--DLAFSPNDSKFLTCSDDGTIKIWDFRMPKEE 215 (464)
T ss_pred ceeEEEccCCCEEEEcC--CCceEEecccchhhhHHhhHhh-hhhhh--eeccCCCCceeEEecCCCeEEEEeccCCchh
Confidence 36899998887666544 67789999986443211 111 01111 22332 6777888888999999997766666
Q ss_pred EEEecCCCCeeEEee----CCCEEEEECC-CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCC
Q 023864 184 EEFTHQMKDGWGLAT----DGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVWP 257 (276)
Q Consensus 184 ~~~~~~~~EGWGLT~----Dg~~L~vSDG-S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d 257 (276)
..+. +.||-... .-+-|++|-| .+-|.++||.+++.+.++.+..+ -+-++++- +|-..+..-.+ -
T Consensus 216 ~vL~---GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn-----tVl~~~f~~n~N~Llt~skD-~ 286 (464)
T KOG0284|consen 216 RVLR---GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN-----TVLAVKFNPNGNWLLTGSKD-Q 286 (464)
T ss_pred heec---cCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccc-----eEEEEEEcCCCCeeEEccCC-c
Confidence 6563 68898653 4578888887 66789999999998877766531 12233444 33333555444 6
Q ss_pred eEEEEeCCC
Q 023864 258 CIPYAYLQA 266 (276)
Q Consensus 258 ~I~vIDp~T 266 (276)
.+-+.|..+
T Consensus 287 ~~kv~DiR~ 295 (464)
T KOG0284|consen 287 SCKVFDIRT 295 (464)
T ss_pred eEEEEehhH
Confidence 677777764
No 326
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=67.92 E-value=28 Score=35.29 Aligned_cols=113 Identities=18% Similarity=0.192 Sum_probs=69.6
Q ss_pred EecCCCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEE----EE------e----ecC-CCceEEEEEEe---C
Q 023864 99 FPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVE----AI------N----QME-GSYFGEGLTLL---G 159 (276)
Q Consensus 99 ~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~----~~------~----~l~-~~~FgEGit~~---g 159 (276)
-+|.... -++++++|+. .| |++ ..+.|.+|+..+|+.. .+ + +.+ ...+.|-+++- +
T Consensus 139 ~~H~~s~--~~vals~d~~~~f-sas--k~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 139 GKHQLSV--TSVALSPDDKRVF-SAS--KDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ccccCcc--eEEEeecccccee-ecC--CCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 3564344 4999998865 55 455 6679999999999843 22 1 111 14566666663 4
Q ss_pred CEEEEEEeeCCEEEEEeCCCCcEEEEEecCCCCeeEEee-CC-CEEEEECCCceEEEEc
Q 023864 160 EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLAT-DG-KVLFGSDGSSMLYQID 216 (276)
Q Consensus 160 ~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~-Dg-~~L~vSDGS~~L~viD 216 (276)
++.++.--.++.+.|+|..|++.++.|+--.+.=-+|+- +| ..||.+--+-.|.+++
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~ 272 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWS 272 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEe
Confidence 566666677788889999999999987633223334442 22 4566644333333333
No 327
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=67.90 E-value=1e+02 Score=28.60 Aligned_cols=157 Identities=13% Similarity=0.150 Sum_probs=91.5
Q ss_pred ceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEE--e----ecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCC
Q 023864 107 TQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAI--N----QMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNN 179 (276)
Q Consensus 107 TQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~--~----~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~t 179 (276)
.-|+-|.|. |+||-- | ..+.|..+|+.||..... - .+....||--+-..-|||.++.- .+.=+.++++|
T Consensus 29 l~GID~Rpa~G~LYgl-~--~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs~-~GqNlR~npdt 104 (236)
T PF14339_consen 29 LVGIDFRPANGQLYGL-G--STGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVSN-TGQNLRLNPDT 104 (236)
T ss_pred EEEEEeecCCCCEEEE-e--CCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEcc-CCcEEEECCCC
Confidence 369999875 789942 3 678999999999986544 2 23344554433334499999975 77788899998
Q ss_pred CcEE---EEEecC---CCCee-------EEeeC------CCEEEEEC-CCceEEEE-cCCCCcEEEEEEeeeCCEeeeee
Q 023864 180 LNKL---EEFTHQ---MKDGW-------GLATD------GKVLFGSD-GSSMLYQI-DPQTLKVIRKDIVRYKGREVRNL 238 (276)
Q Consensus 180 lk~i---~~~~~~---~~EGW-------GLT~D------g~~L~vSD-GS~~L~vi-Dp~t~~vi~~I~V~~~g~pv~~l 238 (276)
..+. +.+.|+ +.+|. +.|+. .-.||-=| ..+.|+.. .|+++.+. .|+.=|-.+...
T Consensus 105 Gav~~~Dg~L~y~~gd~~~G~~p~v~aaAYTNs~~g~~t~TtLy~ID~~~~~Lv~Q~ppN~GtL~---~vG~LGvd~~~~ 181 (236)
T PF14339_consen 105 GAVTIVDGNLAYAAGDMNAGTTPGVTAAAYTNSFAGATTSTTLYDIDTTLDALVTQNPPNDGTLN---TVGPLGVDAAGD 181 (236)
T ss_pred CCceeccCccccCCCccccCCCCceEEEEEecccCCCccceEEEEEecCCCeEEEecCCCCCcEE---eeeccccccCcc
Confidence 8842 234443 11222 12221 23566666 46666666 34444432 222212222233
Q ss_pred eeeEEEC-----CEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 239 NELEFIK-----GEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 239 NELE~id-----G~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
+.+.+.+ ...|+..-.....+..||..||+..
T Consensus 182 ~gFDI~~~~~~~~~a~a~~~~~~~~LY~vdL~TG~at 218 (236)
T PF14339_consen 182 AGFDIAGDGNGGNAAYAVLGVGGSGLYTVDLTTGAAT 218 (236)
T ss_pred cceeeecCCCcceEEEEEecCCCcEEEEEECCCcccE
Confidence 3333432 2477666422167999999998854
No 328
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.76 E-value=1.4e+02 Score=29.91 Aligned_cols=74 Identities=8% Similarity=0.044 Sum_probs=44.8
Q ss_pred EEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEe-ecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEE
Q 023864 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN-QMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~-~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~ 186 (276)
=++|.+||.+.-..| .+-.+|+|+..+..++... +-... -+-|++..|--+.++--.+.+.|+|.++...+.+-
T Consensus 149 ~vaf~~~gs~latgg--~dg~lRv~~~Ps~~t~l~e~~~~~e--V~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGG--TDGTLRVWEWPSMLTILEEIAHHAE--VKDLDFSPDGKFLASIGADSARVWSVNTGAALARK 223 (398)
T ss_pred EEEEcCCCCEeeecc--ccceEEEEecCcchhhhhhHhhcCc--cccceeCCCCcEEEEecCCceEEEEeccCchhhhc
Confidence 356778888876555 6888999996665543321 11111 12344444444445555669999999998665544
No 329
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=66.73 E-value=1.3e+02 Score=29.40 Aligned_cols=163 Identities=14% Similarity=0.174 Sum_probs=100.0
Q ss_pred ecCCCCCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCc------EEEEee-------cCCCceEEEEEEe---CCEE
Q 023864 100 PHDPRAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGK------VEAINQ-------MEGSYFGEGLTLL---GEKL 162 (276)
Q Consensus 100 Phd~~aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgk------v~~~~~-------l~~~~FgEGit~~---g~~L 162 (276)
||. .-+.-|.+++- |++..|.| -+++|.+||+++-. ++.++. -..+-|+.--+.+ +.-+
T Consensus 41 ~Hg--GsvNsL~id~tegrymlSGg--adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 41 PHG--GSVNSLQIDLTEGRYMLSGG--ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred cCC--CccceeeeccccceEEeecC--CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 563 23356777764 78888888 78899999998643 222221 1234565444432 5678
Q ss_pred EEEEeeCCEEEEEeCCCCcEEEEEecC-CCCeeEEee--CCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCE-eeee
Q 023864 163 FQVTWLQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLAT--DGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGR-EVRN 237 (276)
Q Consensus 163 yqlTwk~~~v~V~D~~tlk~i~~~~~~-~~EGWGLT~--Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~-pv~~ 237 (276)
|.-.--++++-|+|.+|++..-.|.++ +-+--+++| -...|+..- -+.+|..-|.+++.-..++.-..+|- +|..
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred eecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence 888888999999999999999999876 112222333 235566644 36788888999887776665544332 3332
Q ss_pred eeeeEEE------CC--EEEEEeCCCCCeEEEEeCCCC
Q 023864 238 LNELEFI------KG--EVWANVWQVWPCIPYAYLQAF 267 (276)
Q Consensus 238 lNELE~i------dG--~lyANvw~s~d~I~vIDp~T~ 267 (276)
----||+ || ++|==---+ .+..+.|-..+
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRras-gcf~~lD~hn~ 233 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRAS-GCFRVLDQHNT 233 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeeccc-ceeEEeecccC
Confidence 2222333 55 366333345 66777776553
No 330
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=66.65 E-value=70 Score=30.98 Aligned_cols=119 Identities=13% Similarity=0.049 Sum_probs=76.5
Q ss_pred CCceEEEEEEeCCEEEEEEeeCC------EEEEEeCCCCcE-----EEEEecCCCCeeEEeeCCCEEEEECC--------
Q 023864 148 GSYFGEGLTLLGEKLFQVTWLQK------TGFIYDQNNLNK-----LEEFTHQMKDGWGLATDGKVLFGSDG-------- 208 (276)
Q Consensus 148 ~~~FgEGit~~g~~LyqlTwk~~------~v~V~D~~tlk~-----i~~~~~~~~EGWGLT~Dg~~L~vSDG-------- 208 (276)
-..+|--+....|++|+---+++ .++.||++|-+- .+.+|- ..+|-..+--|+..|+=-|
T Consensus 77 yqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPg-aRDGHsAcV~gn~MyiFGGye~~a~~F 155 (392)
T KOG4693|consen 77 YQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPG-ARDGHSACVWGNQMYIFGGYEEDAQRF 155 (392)
T ss_pred hhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCC-ccCCceeeEECcEEEEecChHHHHHhh
Confidence 35578878888999998765554 788899988753 333432 4688888888888888544
Q ss_pred CceEEEEcCCCCcEEEEEEeee-----CCEeeeeeeeeEEE-CCE-----EEEEeC-CCCCeEEEEeCCCC
Q 023864 209 SSMLYQIDPQTLKVIRKDIVRY-----KGREVRNLNELEFI-KGE-----VWANVW-QVWPCIPYAYLQAF 267 (276)
Q Consensus 209 S~~L~viDp~t~~vi~~I~V~~-----~g~pv~~lNELE~i-dG~-----lyANvw-~s~d~I~vIDp~T~ 267 (276)
|+.++++|.+|.+-.--..-++ +=+....+.|+-|+ +|+ .|-.+- +..|.|.+.|.+|+
T Consensus 156 S~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~ 226 (392)
T KOG4693|consen 156 SQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATG 226 (392)
T ss_pred hccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEecccc
Confidence 8899999999986532222221 11233345566666 221 442221 11278999999994
No 331
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=66.53 E-value=64 Score=34.54 Aligned_cols=126 Identities=19% Similarity=0.239 Sum_probs=71.9
Q ss_pred CceEEEEec--CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCC-ceEEEEEEe-CCEEEEEEeeCCEEEEEeCC-CC
Q 023864 106 FTQGLLYAE--NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS-YFGEGLTLL-GEKLFQVTWLQKTGFIYDQN-NL 180 (276)
Q Consensus 106 FTQGL~~~~--dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~-~FgEGit~~-g~~LyqlTwk~~~v~V~D~~-tl 180 (276)
-.+-|.|++ ||-||..++ .++..+|+.|+|.+-.. ..+ ..-+...+. ++.|....-|++.+-|||+. ..
T Consensus 130 ~vE~l~fHpTaDgil~s~a~----g~v~i~D~stqk~~~el--~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~ 203 (1012)
T KOG1445|consen 130 IVECLRFHPTADGILASGAH----GSVYITDISTQKTAVEL--SGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASM 203 (1012)
T ss_pred EEEEeecccCcCceEEeccC----ceEEEEEcccCceeecc--cCCchhhhccccccCCceEeeecCCcceEEeCCccCC
Confidence 345666665 467776555 58999999999865442 211 011222332 46777778899999999985 44
Q ss_pred cEEEEEecCCCCeeEEeeCCCEEEEECCCceE-EEEcCCCCcEEEEEEeeeCCEeeeeeeeeEE
Q 023864 181 NKLEEFTHQMKDGWGLATDGKVLFGSDGSSML-YQIDPQTLKVIRKDIVRYKGREVRNLNELEF 243 (276)
Q Consensus 181 k~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L-~viDp~t~~vi~~I~V~~~g~pv~~lNELE~ 243 (276)
+.+.+. ||-|=.-|...+|+.|-..-| .=+|....+.++--.++.-|.|++.+ ||..
T Consensus 204 ~piQ~t-----e~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tl-eld~ 261 (1012)
T KOG1445|consen 204 EPIQTT-----EGHGGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTL-ELDS 261 (1012)
T ss_pred Cccccc-----cccccchhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeE-Eeec
Confidence 555443 333433677777876622111 11344444444445555556666543 4443
No 332
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=66.45 E-value=90 Score=27.31 Aligned_cols=109 Identities=10% Similarity=0.070 Sum_probs=60.8
Q ss_pred EEEEecCCEEEEEcCCCC-C--CeEEEEeCCCCcEEEEeecCCCce----EEEEEEeCCEEEEEEeeC--CEEEEEeCC-
Q 023864 109 GLLYAENDTLFESTGLYG-R--SSVRRVALETGKVEAINQMEGSYF----GEGLTLLGEKLFQVTWLQ--KTGFIYDQN- 178 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg-~--S~I~~iDl~tgkv~~~~~l~~~~F----gEGit~~g~~LyqlTwk~--~~v~V~D~~- 178 (276)
|+.+ +|.||--+..-. . ..|..+|+++.+....+++|.... .-.|...+++|.++.... +++-++-.+
T Consensus 98 ~v~~--~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d 175 (230)
T TIGR01640 98 GVCI--NGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTNNFDLWVLND 175 (230)
T ss_pred eEEE--CCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCCCCcEEEEEECC
Confidence 6655 477765332111 1 279999999988754467775322 235666778998888743 334444332
Q ss_pred ----CCcEEEEEecC----CC---CeeEEeeCCCEEEEECC-Cce-EEEEcCCC
Q 023864 179 ----NLNKLEEFTHQ----MK---DGWGLATDGKVLFGSDG-SSM-LYQIDPQT 219 (276)
Q Consensus 179 ----tlk~i~~~~~~----~~---EGWGLT~Dg~~L~vSDG-S~~-L~viDp~t 219 (276)
...++-+++.+ .. +--+++.+|+.+++.+. ... |.+.|+++
T Consensus 176 ~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~ 229 (230)
T TIGR01640 176 AGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGE 229 (230)
T ss_pred CCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEeccC
Confidence 22333333321 11 13467777777777663 223 77777765
No 333
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=65.35 E-value=17 Score=35.65 Aligned_cols=71 Identities=17% Similarity=0.078 Sum_probs=55.9
Q ss_pred EEEEEEeeCCEEEEEeCCCCcEEEEEecC--CCCeeEEee-CCCEEEEECCCc-eEEEEcCCCCcEEEEEEeeeC
Q 023864 161 KLFQVTWLQKTGFIYDQNNLNKLEEFTHQ--MKDGWGLAT-DGKVLFGSDGSS-MLYQIDPQTLKVIRKDIVRYK 231 (276)
Q Consensus 161 ~LyqlTwk~~~v~V~D~~tlk~i~~~~~~--~~EGWGLT~-Dg~~L~vSDGS~-~L~viDp~t~~vi~~I~V~~~ 231 (276)
.+..+-.-++.+-+||+.|++.+++|+++ .-.|.++.. |+-..+.|-+++ .|..+|..++..+.+|.-+.+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~ 115 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQ 115 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCC
Confidence 45556667899999999999999999865 346778665 466777777666 999999999998888877653
No 334
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=65.16 E-value=61 Score=32.33 Aligned_cols=132 Identities=14% Similarity=0.064 Sum_probs=81.4
Q ss_pred CCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEE--EEEeCCCCcEEEEEecCCCCeeEEeeC-CCE
Q 023864 126 GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTG--FIYDQNNLNKLEEFTHQMKDGWGLATD-GKV 202 (276)
Q Consensus 126 g~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v--~V~D~~tlk~i~~~~~~~~EGWGLT~D-g~~ 202 (276)
.+..|..||+++.......+-- .-|--||.++++..+-+- +++++ ..+|. .++.+|--. .+=.|+.+- +..
T Consensus 87 ~DG~VkiWnlsqR~~~~~f~AH-~G~V~Gi~v~~~~~~tvg-dDKtvK~wk~~~---~p~~tilg~-s~~~gIdh~~~~~ 160 (433)
T KOG0268|consen 87 CDGEVKIWNLSQRECIRTFKAH-EGLVRGICVTQTSFFTVG-DDKTVKQWKIDG---PPLHTILGK-SVYLGIDHHRKNS 160 (433)
T ss_pred cCceEEEEehhhhhhhheeecc-cCceeeEEecccceEEec-CCcceeeeeccC---Ccceeeecc-ccccccccccccc
Confidence 6678999999988765554322 226678888773222221 22222 33333 245555422 222345432 345
Q ss_pred EEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCCeEEEEeCCCCc
Q 023864 203 LFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 203 L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d~I~vIDp~T~~ 268 (276)
+|+|.| ..|.++|++--..+.+..-+.+....-..| .+.-.|.|.+..+ ..|+..|..++.
T Consensus 161 ~FaTcG-e~i~IWD~~R~~Pv~smswG~Dti~svkfN---pvETsILas~~sD-rsIvLyD~R~~~ 221 (433)
T KOG0268|consen 161 VFATCG-EQIDIWDEQRDNPVSSMSWGADSISSVKFN---PVETSILASCASD-RSIVLYDLRQAS 221 (433)
T ss_pred cccccC-ceeeecccccCCccceeecCCCceeEEecC---CCcchheeeeccC-CceEEEecccCC
Confidence 666654 679999998888888877776655444444 3445588999777 999999999854
No 335
>COG4246 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.79 E-value=1.4e+02 Score=28.84 Aligned_cols=56 Identities=14% Similarity=0.206 Sum_probs=31.1
Q ss_pred CCchhhHHHHHHHhhhhhhccccccccCCCCCCCCceeeeEEEEEEecCCC--CCceEEEEec
Q 023864 54 GIPAVMLIFFFLCGFVLLCISSNMWIRFPGVDQSPSIYTIQVVNEFPHDPR--AFTQGLLYAE 114 (276)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~Vv~~~Phd~~--aFTQGL~~~~ 114 (276)
|..+...+|..+++++..|.+...-.+ ....+|+ +..-+..+|.+.+ .| -||+|.+
T Consensus 5 R~~~~~~~fA~l~~la~~a~~~~p~~A---a~~pvpV-kvr~it~f~vgtt~t~f-G~lefvG 62 (340)
T COG4246 5 RTALVCGVFAGLALLATAAAARAPPVA---AAEPVPV-KVRTITPFPVGTTTTLF-GGLEFVG 62 (340)
T ss_pred chhhhHHHHHHHHHHHhhhccCCCccc---ccCCcce-eeEEcceeeccccceee-cceEEee
Confidence 556677777777766655544433323 2333333 5566777887643 33 4566653
No 336
>KOG4328 consensus WD40 protein [Function unknown]
Probab=64.12 E-value=81 Score=32.20 Aligned_cols=129 Identities=12% Similarity=0.124 Sum_probs=84.7
Q ss_pred CceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEE---------eecCCCceEEEEEEeCCEEEEEEeeCCEEEEE
Q 023864 106 FTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAI---------NQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIY 175 (276)
Q Consensus 106 FTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~---------~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~ 175 (276)
-+-++.+.|- ..++.++| -+..+.+||+..-.-.+. ..+...|| ...++. .+.|=+++.+-||
T Consensus 324 KI~sv~~NP~~p~~laT~s--~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyF----SPs~gt-l~TT~~D~~IRv~ 396 (498)
T KOG4328|consen 324 KITSVALNPVCPWFLATAS--LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYF----SPSGGT-LLTTCQDNEIRVF 396 (498)
T ss_pred ccceeecCCCCchheeecc--cCcceeeeehhhhcCCCCcceecccccceeeeeEE----cCCCCc-eEeeccCCceEEe
Confidence 4568888775 35666666 567788999876322221 13334444 566778 7888899999999
Q ss_pred eC----CCCcEEEEEecCCCCeeEEe-------eCCCEEEEECCCceEEEEcCCCCcEEEEEEeee-CCEeeeeeeeeEE
Q 023864 176 DQ----NNLNKLEEFTHQMKDGWGLA-------TDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY-KGREVRNLNELEF 243 (276)
Q Consensus 176 D~----~tlk~i~~~~~~~~EGWGLT-------~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~-~g~pv~~lNELE~ 243 (276)
|. +.+.++.+|++...-|-=|| ||...+++.+-...|-|+|++..+.+.. +.+ .-..|.-+||+-.
T Consensus 397 dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~e--l~~P~~~tI~~vn~~HP 474 (498)
T KOG4328|consen 397 DSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCE--LHDPESSTIPSVNEFHP 474 (498)
T ss_pred ecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeee--ccCccccccccceeecc
Confidence 99 78888899986522222222 3556667777899999999998886543 222 1234556666653
No 337
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=63.03 E-value=1e+02 Score=33.78 Aligned_cols=124 Identities=14% Similarity=0.028 Sum_probs=84.6
Q ss_pred eEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEe--ecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEE
Q 023864 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN--QMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEE 185 (276)
Q Consensus 108 QGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~--~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~ 185 (276)
.++.+. .+.+|-++| ..|++|..++-....+. .....-----+...|..+|+.--.+..+-.++.+|++-+..
T Consensus 630 rsla~~-ed~~was~g----G~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfhtetl~hlqd 704 (925)
T KOG3522|consen 630 RSLAFQ-EDFVWASEG----GCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTETLWHLQD 704 (925)
T ss_pred cchhhh-hceeeeecC----CceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEecccccCCccc
Confidence 445554 468887777 47888888775443332 12222222234556899999998899988899999998888
Q ss_pred EecCCCCeeEEeeCCCEEEEEC---CCceEEEEcCCCCcEEEEEEeeeCCEeeee
Q 023864 186 FTHQMKDGWGLATDGKVLFGSD---GSSMLYQIDPQTLKVIRKDIVRYKGREVRN 237 (276)
Q Consensus 186 ~~~~~~EGWGLT~Dg~~L~vSD---GS~~L~viDp~t~~vi~~I~V~~~g~pv~~ 237 (276)
+... .-|--+.|+++.|=++- --+.|.|.++.|..+..-+.+..+.+++.+
T Consensus 705 ~nia-T~vt~~lP~~kllsv~~rl~c~gl~~V~~~~~l~v~~~v~~~q~~k~~~~ 758 (925)
T KOG3522|consen 705 SNIA-TSVTVDLPFGKLLSVPGRLWCQGLLMVLTSLTLLVALPVPRLQDSKVTGR 758 (925)
T ss_pred cccC-cceeecCCCcccccCCCcccccceeEEeccceeEEEeeeeeccCCceeee
Confidence 8754 23444566666544422 167899999999999988888777666553
No 338
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=62.61 E-value=1.6e+02 Score=29.61 Aligned_cols=110 Identities=14% Similarity=0.111 Sum_probs=74.2
Q ss_pred CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCC--cEEEEeecCCCceEEEEEEe--CCEEEEEEeeCCEEEEEeCC
Q 023864 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETG--KVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQN 178 (276)
Q Consensus 103 ~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tg--kv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~ 178 (276)
..+| --+.+++.-.|+.+++ -+--|+.|||.++ ++....-++..-|-+++-.. +...++---.+|++-++|..
T Consensus 300 ~ksl-~~i~~~~~~~Ll~~gs--sdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 300 NKSL-NCISYSPLSKLLASGS--SDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred Ccce-eEeecccccceeeecC--CCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEec
Confidence 4455 4667777667887655 5566999999974 67777777877788888776 46777777789999999988
Q ss_pred CCc-EEEEEecCCCCeeEEeeCCCEEEEECC-CceEEEE
Q 023864 179 NLN-KLEEFTHQMKDGWGLATDGKVLFGSDG-SSMLYQI 215 (276)
Q Consensus 179 tlk-~i~~~~~~~~EGWGLT~Dg~~L~vSDG-S~~L~vi 215 (276)
+-+ .+-.+.-..--=...+.....+++|-| +++|++.
T Consensus 377 S~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 377 STKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIF 415 (423)
T ss_pred cCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEe
Confidence 776 777665220011123444566777776 4555554
No 339
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=62.14 E-value=51 Score=33.77 Aligned_cols=104 Identities=17% Similarity=0.236 Sum_probs=60.2
Q ss_pred EEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC----EEEEEeCCCCcEEE
Q 023864 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK----TGFIYDQNNLNKLE 184 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~----~v~V~D~~tlk~i~ 184 (276)
||.+..+++. -|.|..+|+++|+++.+-++- ..-|-++...++.+.++--.+| ++..+|+.||++++
T Consensus 364 ~Lkv~d~~~~--------ls~LvllD~~tg~~l~~S~~~-~Ir~r~~~~~~~~~vaI~g~~G~~~ikLvlid~~tLev~k 434 (489)
T PF05262_consen 364 GLKVLDPNHY--------LSELVLLDSDTGDTLKRSPVN-GIRGRTFYEREDDLVAIAGCSGNAAIKLVLIDPETLEVKK 434 (489)
T ss_pred EEEEecCCCc--------ceeEEEEeCCCCceecccccc-eeccceeEEcCCCEEEEeccCCchheEEEecCcccceeee
Confidence 8888754332 278999999999887765443 1223345555554444432233 33446899999988
Q ss_pred EEecCC-CCeeEEeeCCCEEE--E-EC-CCceEEEEcCCCCcEE
Q 023864 185 EFTHQM-KDGWGLATDGKVLF--G-SD-GSSMLYQIDPQTLKVI 223 (276)
Q Consensus 185 ~~~~~~-~EGWGLT~Dg~~L~--v-SD-GS~~L~viDp~t~~vi 223 (276)
+-..+. .+- -|--||+.+| + .+ |.=.|.-+|.+ ++..
T Consensus 435 es~~~i~~~S-~l~~~~~~iyaVv~~~~g~~~L~rF~~~-L~~~ 476 (489)
T PF05262_consen 435 ESEDEISWQS-SLIVDGQMIYAVVKKDNGKWYLGRFDSN-LSLF 476 (489)
T ss_pred eccccccccC-ceEEcCCeEEEEEEcCCCeEEEeecCcc-hHHH
Confidence 765431 111 2445676666 3 23 33346667765 5443
No 340
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=61.86 E-value=49 Score=33.28 Aligned_cols=114 Identities=16% Similarity=0.213 Sum_probs=74.7
Q ss_pred CCCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC---CCceEEEEEEeCCEEEEEEeeCCEEEEEeCCC
Q 023864 104 RAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQME---GSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNN 179 (276)
Q Consensus 104 ~aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~---~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~t 179 (276)
..-.+-..|++- ..||-|.| .++.+..+|..+++-....... ...+..-+-..++.|...-=-++++.++|+.+
T Consensus 227 ~~~VeDV~~h~~h~~lF~sv~--dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn 304 (422)
T KOG0264|consen 227 EDVVEDVAWHPLHEDLFGSVG--DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN 304 (422)
T ss_pred Ccceehhhccccchhhheeec--CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh
Confidence 444455666653 46999999 8999999999964221222222 33444444555677777666799999999998
Q ss_pred CcE-EEEEecCCCCeeE--EeeCCCEEEEECC-CceEEEEcCCC
Q 023864 180 LNK-LEEFTHQMKDGWG--LATDGKVLFGSDG-SSMLYQIDPQT 219 (276)
Q Consensus 180 lk~-i~~~~~~~~EGWG--LT~Dg~~L~vSDG-S~~L~viDp~t 219 (276)
++. +-++.-...|=.. .+|..+.++.|-| ..+|.++|...
T Consensus 305 L~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 305 LNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred cccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 875 3344311122223 4678889999887 66899999764
No 341
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=61.41 E-value=22 Score=38.49 Aligned_cols=66 Identities=15% Similarity=0.098 Sum_probs=45.0
Q ss_pred CEEEEECC--CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE---CCEEEEEeCCCCCeEEEEeCCCCc
Q 023864 201 KVLFGSDG--SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI---KGEVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 201 ~~L~vSDG--S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i---dG~lyANvw~s~d~I~vIDp~T~~ 268 (276)
..+++.|. .+.||.+|.++++++..+.+.+++.-....++--+. +...|+.+ .. |.+.+|||.-.+
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGl-s~-n~lfriDpR~~~ 563 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGL-SD-NSLFRIDPRLSG 563 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEE-CC-CceEEeccCCCC
Confidence 45555553 789999999999999999998766322222221111 33467666 45 899999998743
No 342
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=60.91 E-value=1.1e+02 Score=30.72 Aligned_cols=155 Identities=14% Similarity=0.107 Sum_probs=92.0
Q ss_pred cCCCCCceEEEEecC--CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC------CceEEEEEEe--CCEEEEEEeeCC
Q 023864 101 HDPRAFTQGLLYAEN--DTLFESTGLYGRSSVRRVALETGKVEAINQMEG------SYFGEGLTLL--GEKLFQVTWLQK 170 (276)
Q Consensus 101 hd~~aFTQGL~~~~d--g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~------~~FgEGit~~--g~~LyqlTwk~~ 170 (276)
|....| ||.+... |+|. |++ .+..|..||+...........+. .---|-++++ ...||-.--.++
T Consensus 176 H~~eg~--glsWn~~~~g~Ll-s~~--~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~ 250 (422)
T KOG0264|consen 176 HEKEGY--GLSWNRQQEGTLL-SGS--DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG 250 (422)
T ss_pred eccccc--ccccccccceeEe-ecc--CCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCC
Confidence 444577 8988765 4554 566 78899999987643321111111 1122333433 478888888899
Q ss_pred EEEEEeCCC--CcEEEEEecCCCCeeE--EeeCCCEEEEECC-CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEEC
Q 023864 171 TGFIYDQNN--LNKLEEFTHQMKDGWG--LATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK 245 (276)
Q Consensus 171 ~v~V~D~~t--lk~i~~~~~~~~EGWG--LT~Dg~~L~vSDG-S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~id 245 (276)
++.++|..+ .+.-....--.++=+- +.|-+..++.+-+ ..+|..+|+.+++. .-..+. |+. ..+..+||.-
T Consensus 251 ~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-~lh~~e--~H~-dev~~V~WSP 326 (422)
T KOG0264|consen 251 KLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-PLHTFE--GHE-DEVFQVEWSP 326 (422)
T ss_pred eEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-Cceecc--CCC-cceEEEEeCC
Confidence 999999984 3333333211123233 4566788888775 77999999999876 112222 221 2445566764
Q ss_pred C--EEEEEeCCCCCeEEEEeCC
Q 023864 246 G--EVWANVWQVWPCIPYAYLQ 265 (276)
Q Consensus 246 G--~lyANvw~s~d~I~vIDp~ 265 (276)
+ .|.|.-... ..+.|=|..
T Consensus 327 h~etvLASSg~D-~rl~vWDls 347 (422)
T KOG0264|consen 327 HNETVLASSGTD-RRLNVWDLS 347 (422)
T ss_pred CCCceeEecccC-CcEEEEecc
Confidence 3 477777544 666666554
No 343
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=60.85 E-value=14 Score=38.25 Aligned_cols=73 Identities=11% Similarity=0.160 Sum_probs=57.1
Q ss_pred eEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe---CCEEEEEEeeCCEEEEEeCCCCcEEE
Q 023864 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL---GEKLFQVTWLQKTGFIYDQNNLNKLE 184 (276)
Q Consensus 108 QGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~---g~~LyqlTwk~~~v~V~D~~tlk~i~ 184 (276)
.+++|++||+.+...+ .+..+|++|+++.+++. +-+.|||-=+++. ++++.+.-=+++-|.||.....+++.
T Consensus 294 n~f~FS~DG~~LA~VS--qDGfLRvF~fdt~eLlg---~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 294 NEFAFSPDGKYLATVS--QDGFLRIFDFDTQELLG---VMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred cceeEcCCCceEEEEe--cCceEEEeeccHHHHHH---HHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEE
Confidence 4678999998766666 67899999999988754 3468998766664 46766666788889999998888887
Q ss_pred E
Q 023864 185 E 185 (276)
Q Consensus 185 ~ 185 (276)
+
T Consensus 369 R 369 (636)
T KOG2394|consen 369 R 369 (636)
T ss_pred e
Confidence 6
No 344
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=60.62 E-value=2e+02 Score=29.37 Aligned_cols=138 Identities=15% Similarity=0.162 Sum_probs=91.1
Q ss_pred eEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEe
Q 023864 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFT 187 (276)
Q Consensus 108 QGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~ 187 (276)
+|+-...-+++. +.|. -+.+++.|++.... +.+.-+..-+-+-+++.|+.=|+.-=.++.+..++..+.+++-+.+
T Consensus 290 ~~IdaL~reR~v-tVGg-rDrT~rlwKi~ees--qlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 290 LGIDALSRERCV-TVGG-RDRTVRLWKIPEES--QLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred eeechhcccceE-Eecc-ccceeEEEeccccc--eeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEee
Confidence 466544334554 3441 46678888874321 3334566668899999999999999999999999999999998876
Q ss_pred cC---CCCe-------eE--Eee-CCCEEEEEC---CCceEEEEcCC--CCcEEEEEEeeeCCEeeeeeeeeEEE-CCE-
Q 023864 188 HQ---MKDG-------WG--LAT-DGKVLFGSD---GSSMLYQIDPQ--TLKVIRKDIVRYKGREVRNLNELEFI-KGE- 247 (276)
Q Consensus 188 ~~---~~EG-------WG--LT~-Dg~~L~vSD---GS~~L~viDp~--t~~vi~~I~V~~~g~pv~~lNELE~i-dG~- 247 (276)
.. .+++ |= |+. .|.-|+.|- |.=+|+.+... .++++..+.+. ..+|+|.+. +|+
T Consensus 366 ~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~------GfVNsl~f~~sgk~ 439 (479)
T KOG0299|consen 366 LAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV------GFVNSLAFSNSGKR 439 (479)
T ss_pred ccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc------cEEEEEEEccCCCE
Confidence 43 3343 43 221 344455532 44567777654 35566666654 488999965 565
Q ss_pred EEEEeCCC
Q 023864 248 VWANVWQV 255 (276)
Q Consensus 248 lyANvw~s 255 (276)
|+|.+.+.
T Consensus 440 ivagiGkE 447 (479)
T KOG0299|consen 440 IVAGIGKE 447 (479)
T ss_pred EEEecccc
Confidence 99998776
No 345
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=60.33 E-value=1.6e+02 Score=29.76 Aligned_cols=69 Identities=17% Similarity=0.104 Sum_probs=53.3
Q ss_pred CEEEEEEeeCCEEEEEeCCCCcEEEEEecC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEe
Q 023864 160 EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIV 228 (276)
Q Consensus 160 ~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V 228 (276)
...+.-.-.++++-.||..+-.+..+++.+ .-.-..++.||-.|..+--.|.|.+||..|+++.....-
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA 381 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSA 381 (459)
T ss_pred ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeec
Confidence 455555667888999999999998888865 112233677999999987799999999999998766554
No 346
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=59.91 E-value=26 Score=21.92 Aligned_cols=29 Identities=14% Similarity=0.157 Sum_probs=23.4
Q ss_pred CCCeeEEeeCCCEEEEEC-CCceEEEEcCC
Q 023864 190 MKDGWGLATDGKVLFGSD-GSSMLYQIDPQ 218 (276)
Q Consensus 190 ~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~ 218 (276)
.+.|.++.++++.||-+| +...|+..|-.
T Consensus 10 ~~~~la~d~~~~~lYw~D~~~~~I~~~~~~ 39 (43)
T smart00135 10 HPNGLAVDWIEGRLYWTDWGLDVIEVANLD 39 (43)
T ss_pred CcCEEEEeecCCEEEEEeCCCCEEEEEeCC
Confidence 468899999999999999 67777776654
No 347
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.55 E-value=28 Score=34.99 Aligned_cols=75 Identities=13% Similarity=0.136 Sum_probs=54.5
Q ss_pred CCCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCC
Q 023864 102 DPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQN 178 (276)
Q Consensus 102 d~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~ 178 (276)
....|..+|.|+|..+ |.+.+- -.+.|.++|++|.-+......+..++.-...+++....-.--++|-|+|||..
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~as--l~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLAS--LGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred ccchhhhhhccCccccceeeeec--cCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 4678899999998754 433222 34799999999999988888887766544444454444456678999999975
No 348
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=58.50 E-value=2.6e+02 Score=29.92 Aligned_cols=117 Identities=19% Similarity=0.198 Sum_probs=83.0
Q ss_pred eEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEE-EeecCCCceEEEEEEe-CCEEEEEEeeCCEEEEEeCCCCcEEE
Q 023864 108 QGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEA-INQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNKLE 184 (276)
Q Consensus 108 QGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~-~~~l~~~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~tlk~i~ 184 (276)
--|+|+.+ +.|=.| .....|-.|++..+=... .+..|+.--=|||++. ++|||-.- -++.+.-||+.+++++.
T Consensus 29 ~slA~s~kS~~lAvs---Rt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g-~sg~i~EwDl~~lk~~~ 104 (691)
T KOG2048|consen 29 VSLAYSHKSNQLAVS---RTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSG-LSGSITEWDLHTLKQKY 104 (691)
T ss_pred EEEEEeccCCceeee---ccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeec-CCceEEEEecccCceeE
Confidence 35666544 344322 255689999998874433 3466766678999998 89999886 57899999999999999
Q ss_pred EEecCCCCeeEEe--eCCCEEEEE-C-CCceEEEEcCCCCcEEEEEEeee
Q 023864 185 EFTHQMKDGWGLA--TDGKVLFGS-D-GSSMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 185 ~~~~~~~EGWGLT--~Dg~~L~vS-D-GS~~L~viDp~t~~vi~~I~V~~ 230 (276)
.+.-..+-=|.++ +-++.|-+. | | -|+.++-.+.+++-+.....
T Consensus 105 ~~d~~gg~IWsiai~p~~~~l~IgcddG--vl~~~s~~p~~I~~~r~l~r 152 (691)
T KOG2048|consen 105 NIDSNGGAIWSIAINPENTILAIGCDDG--VLYDFSIGPDKITYKRSLMR 152 (691)
T ss_pred EecCCCcceeEEEeCCccceEEeecCCc--eEEEEecCCceEEEEeeccc
Confidence 9875445667754 556677775 4 4 88888888877776655544
No 349
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=58.07 E-value=79 Score=32.44 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=15.6
Q ss_pred CCCeeEEeeCCCEEEEECCCc
Q 023864 190 MKDGWGLATDGKVLFGSDGSS 210 (276)
Q Consensus 190 ~~EGWGLT~Dg~~L~vSDGS~ 210 (276)
.|++..+.++|..++..|++.
T Consensus 437 sPDNL~~d~~G~LwI~eD~~~ 457 (524)
T PF05787_consen 437 SPDNLAFDPDGNLWIQEDGGG 457 (524)
T ss_pred CCCceEECCCCCEEEEeCCCC
Confidence 467888888888777799633
No 350
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=57.88 E-value=32 Score=28.99 Aligned_cols=74 Identities=3% Similarity=-0.106 Sum_probs=40.3
Q ss_pred hhhHHHHHHHhhhhhhccccccccCCCCCCCCceeeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEe
Q 023864 57 AVMLIFFFLCGFVLLCISSNMWIRFPGVDQSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVA 134 (276)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iD 134 (276)
++.++++++++|+++.|--....- ..........+|+...+..+.-..-=+++. |..|..+-.--.-+.++.++
T Consensus 21 v~~~L~lVl~lI~~~aWLlkR~~~---~~~~~~~~~lkVva~~slG~RErvvvVeV~-~~~LlLGVT~~~I~~Lh~l~ 94 (124)
T PRK11486 21 VSGALIGIIALILAAAWLVKRLGF---APKRTGVRGLKISASASLGARERVVIVDVE-DARLVLGVTAGQINLLHKLP 94 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC---CCCCCCCcceEEEEeeccCCccEEEEEEEC-CEEEEEEEccCceeehhccC
Confidence 777788888877765543333322 222122234799999999766664444443 34555443322334444444
No 351
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=57.77 E-value=2.5e+02 Score=29.60 Aligned_cols=134 Identities=16% Similarity=0.173 Sum_probs=73.5
Q ss_pred EEEec-CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--------CCEEEEEEeeCCEEEEEeCCCC
Q 023864 110 LLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--------GEKLFQVTWLQKTGFIYDQNNL 180 (276)
Q Consensus 110 L~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--------g~~LyqlTwk~~~v~V~D~~tl 180 (276)
+..+. |..|+.-+|. ..+++++.|.+-||++..-.+..... .-.+.. .+.|.=| -+..+|.+||.-.
T Consensus 472 ~mlh~~dssli~~dg~-~~~kLykmDIErGkvveeW~~~ddvv-Vqy~p~~kf~qmt~eqtlvGl--S~~svFrIDPR~~ 547 (776)
T COG5167 472 IMLHDNDSSLIYLDGG-ERDKLYKMDIERGKVVEEWDLKDDVV-VQYNPYFKFQQMTDEQTLVGL--SDYSVFRIDPRAR 547 (776)
T ss_pred ceeecCCcceEEecCC-CcccceeeecccceeeeEeecCCcce-eecCCchhHHhcCccceEEee--cccceEEeccccc
Confidence 34443 3344444553 78999999999999998877765431 011111 1234333 3678999998533
Q ss_pred c-EEE--EE-ecC--CCCeeEE-eeCCCEEEEECCCceEEEEc----------CCCCcEEEEEEeeeCCEeeeeeeeeEE
Q 023864 181 N-KLE--EF-THQ--MKDGWGL-ATDGKVLFGSDGSSMLYQID----------PQTLKVIRKDIVRYKGREVRNLNELEF 243 (276)
Q Consensus 181 k-~i~--~~-~~~--~~EGWGL-T~Dg~~L~vSDGS~~L~viD----------p~t~~vi~~I~V~~~g~pv~~lNELE~ 243 (276)
- +|+ ++ .|. ..-.-|. |..|.....|++. .|...| |.=++.++-|.|+.
T Consensus 548 gNKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kG-DirLyDRig~rAKtalP~lG~aIk~idvta------------- 613 (776)
T COG5167 548 GNKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKG-DIRLYDRIGKRAKTALPGLGDAIKHIDVTA------------- 613 (776)
T ss_pred CCceeeeeehhccccccccccccccCceEEEecCCC-ceeeehhhcchhhhcCcccccceeeeEeec-------------
Confidence 2 222 22 122 1222344 4456666667732 233344 33345555566654
Q ss_pred ECC-EEEEEeCCCCCeEEEEeCC
Q 023864 244 IKG-EVWANVWQVWPCIPYAYLQ 265 (276)
Q Consensus 244 idG-~lyANvw~s~d~I~vIDp~ 265 (276)
+| .|.|.|= +.|+.+|..
T Consensus 614 -~Gk~ilaTCk---~yllL~d~~ 632 (776)
T COG5167 614 -NGKHILATCK---NYLLLTDVP 632 (776)
T ss_pred -CCcEEEEeec---ceEEEEecc
Confidence 44 4778884 568888764
No 352
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=57.64 E-value=1.5e+02 Score=30.89 Aligned_cols=105 Identities=11% Similarity=0.122 Sum_probs=62.4
Q ss_pred CCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC--CEEEEEE---eeCCEEEEEeC
Q 023864 104 RAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG--EKLFQVT---WLQKTGFIYDQ 177 (276)
Q Consensus 104 ~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g--~~LyqlT---wk~~~v~V~D~ 177 (276)
..-+.-..|+++++ +-+.-| |=.+++.++|+. |+++....-+++ --.+.+ +++.++. ...|.+-|+|.
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyG-fMPAkvtifnlr-~~~v~df~egpR----N~~~fnp~g~ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYG-FMPAKVTIFNLR-GKPVFDFPEGPR----NTAFFNPHGNIILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred CCCceEEEECCCCCEEEEEEe-cccceEEEEcCC-CCEeEeCCCCCc----cceEECCCCCEEEEeecCCCCCceEEEec
Confidence 33345566777664 323333 667888888885 555444322221 111222 3333332 24689999999
Q ss_pred CCCcEEEEEecCCCCeeEEeeCCCEEEEECCCceEEE
Q 023864 178 NNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQ 214 (276)
Q Consensus 178 ~tlk~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~v 214 (276)
.+.|++.++.....-=..-+|||++++.+--+-++.+
T Consensus 344 ~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrv 380 (566)
T KOG2315|consen 344 PNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRV 380 (566)
T ss_pred cchhhccccccCCceEEEEcCCCcEEEEEeccccEEe
Confidence 9999999997542122235789999998765555544
No 353
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=57.14 E-value=1.8e+02 Score=28.43 Aligned_cols=118 Identities=17% Similarity=0.221 Sum_probs=71.2
Q ss_pred EEecCCCCCceEEEEecCC-EEEEEcCCCCCCeEEEEeCCCCc---EEEEeecCCCceEEEEEEe-CCEEEEEEe--eCC
Q 023864 98 EFPHDPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGK---VEAINQMEGSYFGEGLTLL-GEKLFQVTW--LQK 170 (276)
Q Consensus 98 ~~Phd~~aFTQGL~~~~dg-~LyeStG~yg~S~I~~iDl~tgk---v~~~~~l~~~~FgEGit~~-g~~LyqlTw--k~~ 170 (276)
=+.||..-| -++|..++ .+|.|.| ++.+||++|+..-+ ++.+-+-+..+. .-++.- .|-=|++|. .++
T Consensus 192 LIAHDKEV~--DIaf~~~s~~~FASvg--aDGSvRmFDLR~leHSTIIYE~p~~~~pL-lRLswnkqDpnymATf~~dS~ 266 (364)
T KOG0290|consen 192 LIAHDKEVY--DIAFLKGSRDVFASVG--ADGSVRMFDLRSLEHSTIIYEDPSPSTPL-LRLSWNKQDPNYMATFAMDSN 266 (364)
T ss_pred EEecCccee--EEEeccCccceEEEec--CCCcEEEEEecccccceEEecCCCCCCcc-eeeccCcCCchHHhhhhcCCc
Confidence 357988888 88998765 4999999 89999999997643 222222221111 011111 133344443 567
Q ss_pred EEEEEeCCC-CcEEEEEe-cC-CCCeeEEeeCCCEEEEECC-CceEEEEcCCCC
Q 023864 171 TGFIYDQNN-LNKLEEFT-HQ-MKDGWGLATDGKVLFGSDG-SSMLYQIDPQTL 220 (276)
Q Consensus 171 ~v~V~D~~t-lk~i~~~~-~~-~~EGWGLT~Dg~~L~vSDG-S~~L~viDp~t~ 220 (276)
+|.++|... -..+.++. ++ .-.|..-+|-....+.|-| +.+..++|.+..
T Consensus 267 ~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 267 KVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred eEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 888888642 23444443 21 1245566666777888888 457788887654
No 354
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=56.67 E-value=31 Score=22.20 Aligned_cols=32 Identities=19% Similarity=0.090 Sum_probs=24.1
Q ss_pred CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCc
Q 023864 116 DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY 150 (276)
Q Consensus 116 g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~ 150 (276)
|++|..+ ....|..+|.+||+++=+.+.+...
T Consensus 1 ~~v~~~~---~~g~l~AlD~~TG~~~W~~~~~~~~ 32 (38)
T PF01011_consen 1 GRVYVGT---PDGYLYALDAKTGKVLWKFQTGPPV 32 (38)
T ss_dssp TEEEEET---TTSEEEEEETTTTSEEEEEESSSGG
T ss_pred CEEEEeC---CCCEEEEEECCCCCEEEeeeCCCCC
Confidence 4567652 4678999999999998887776543
No 355
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=56.04 E-value=56 Score=35.41 Aligned_cols=155 Identities=10% Similarity=0.089 Sum_probs=90.3
Q ss_pred CCCceEEEEecC---CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCC--------ceEEEEEE-------eCCEEEEE
Q 023864 104 RAFTQGLLYAEN---DTLFESTGLYGRSSVRRVALETGKVEAINQMEGS--------YFGEGLTL-------LGEKLFQV 165 (276)
Q Consensus 104 ~aFTQGL~~~~d---g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~--------~FgEGit~-------~g~~Lyql 165 (276)
.+=.+-|+|+.. .+|+.|++ .+--||+||....=. ....|+.+ +-+.|+.+ +.-..|-.
T Consensus 501 esEilcLeyS~p~~~~kLLASas--rdRlIHV~Dv~rny~-l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~ 577 (1080)
T KOG1408|consen 501 ESEILCLEYSFPVLTNKLLASAS--RDRLIHVYDVKRNYD-LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRV 577 (1080)
T ss_pred cceeEEEeecCchhhhHhhhhcc--CCceEEEEecccccc-hhhhhcccccceeEEEEeecCCceEEEeccCchhhheeh
Confidence 344579999854 35888877 667799999865421 11123321 11222111 11234444
Q ss_pred EeeCCEEEEEeCCCCcEEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEee--eCCEeeeeeeeeEE
Q 023864 166 TWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVR--YKGREVRNLNELEF 243 (276)
Q Consensus 166 Twk~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~--~~g~pv~~lNELE~ 243 (276)
+.|.+.+-++-..|...-++--|.| .+.|.-+.....-.+.+|.++|.+++|.++..+-. ++|.+|.-. .
T Consensus 578 ~qk~~~g~~f~r~t~t~~ktTlYDm----~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~----l 649 (1080)
T KOG1408|consen 578 NQKASSGRLFPRHTQTLSKTTLYDM----AVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVI----L 649 (1080)
T ss_pred hccccCceeccccccccccceEEEe----eeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEE----E
Confidence 5555444444433332222222222 34455555555556889999999999999887653 357777633 2
Q ss_pred ECCEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 244 IKGEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 244 idG~lyANvw~s~d~I~vIDp~T~~v 269 (276)
+---||++.-.+|..+.+.|--+|+-
T Consensus 650 DPSgiY~atScsdktl~~~Df~sgEc 675 (1080)
T KOG1408|consen 650 DPSGIYLATSCSDKTLCFVDFVSGEC 675 (1080)
T ss_pred CCCccEEEEeecCCceEEEEeccchh
Confidence 33458877777757899999988763
No 356
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=55.76 E-value=39 Score=26.41 Aligned_cols=49 Identities=18% Similarity=0.237 Sum_probs=36.8
Q ss_pred CCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeCCEEEEEeCC
Q 023864 126 GRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQN 178 (276)
Q Consensus 126 g~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~ 178 (276)
.-+.|..||.+.-++ ....-.|+-||+++ ++.||+..-..+.+++|..+
T Consensus 34 ~~~~Vvyyd~~~~~~----va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 34 PWGNVVYYDGKEVKV----VASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCceEEEEeCCEeEE----eeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 456777888765333 23344678899986 58999999999999999864
No 357
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=55.66 E-value=2.2e+02 Score=28.34 Aligned_cols=173 Identities=12% Similarity=0.180 Sum_probs=103.6
Q ss_pred CCceeeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEE---eCCCCcEEEEeecCC-----CceEEEE-EE
Q 023864 87 SPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRV---ALETGKVEAINQMEG-----SYFGEGL-TL 157 (276)
Q Consensus 87 ~~~~~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~i---Dl~tgkv~~~~~l~~-----~~FgEGi-t~ 157 (276)
.+.+|.+.==+.||.-..+.|.|--|++.-.|.++- +.+..|-+ |+..|++ ..++|+- .-|.--+ ++
T Consensus 116 ~pTvY~Fsgd~iY~~f~~~lTR~a~fDGe~VLvvsR---~~~~pHLLkvsdLK~g~i-npI~LdlTgVtgGTf~yNmgAl 191 (442)
T PF15416_consen 116 KPTVYDFSGDNIYDDFAGLLTRCASFDGEHVLVVSR---GTTKPHLLKVSDLKAGEI-NPIPLDLTGVTGGTFSYNMGAL 191 (442)
T ss_pred CCceEeccCCccchhhhhhhhcccCCCCcEEEEEec---CCCCceeeehhHhhcCCc-cceeeecccccCcccccchhhh
Confidence 345566665567777778899999997644477663 34455544 4555543 4444442 2222222 34
Q ss_pred eCCEEEEEEeeCCE-----EEEEeCCCC--cEEEEEecCCCCeeE----------EeeCC-CEEEEEC-CCceEEEEcCC
Q 023864 158 LGEKLFQVTWLQKT-----GFIYDQNNL--NKLEEFTHQMKDGWG----------LATDG-KVLFGSD-GSSMLYQIDPQ 218 (276)
Q Consensus 158 ~g~~LyqlTwk~~~-----v~V~D~~tl--k~i~~~~~~~~EGWG----------LT~Dg-~~L~vSD-GS~~L~viDp~ 218 (276)
.|+++|+.+--.++ ++-|+.-|. +++..+..+.-.|-| |..+| .++|..| ++..+.-++.+
T Consensus 192 ~nGH~Y~asLSG~~~SPLKiY~w~tPts~PevIa~inV~~I~gAg~RhGDn~S~nlD~nGnGyiFFgdnaat~ilR~~vs 271 (442)
T PF15416_consen 192 VNGHSYLASLSGGKASPLKIYYWETPTSAPEVIADINVGDIPGAGNRHGDNFSLNLDENGNGYIFFGDNAATNILRFTVS 271 (442)
T ss_pred cCCeEEEEeccCCCCCceEEEEecCCCCCceEEEeeeeccCcccccccCcceeEEeccCCceEEEecCCccceEEEEEcc
Confidence 58999999987764 566776555 456666644212222 23333 3566665 67777777888
Q ss_pred CCcEEE----EEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCCeEEEEeCCC
Q 023864 219 TLKVIR----KDIVRYKGREVRNLNELEFIKGEVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 219 t~~vi~----~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d~I~vIDp~T 266 (276)
.++-+. -|++..+-.-+.++|-.|-.+.+||..+-.- |..+|-.-
T Consensus 272 n~k~v~~~~~vip~~~~~~~~t~v~ri~nT~~Yl~sG~~~P---vtLv~~s~ 320 (442)
T PF15416_consen 272 NYKTVSTEPKVIPSKADATMWTNVYRIGNTSQYLWSGHRMP---VTLVDESG 320 (442)
T ss_pred CcccccCcceEeecCCCcceeEEEEEeccccceeEeccccc---eEEecccc
Confidence 776653 3344445556667776666678899877443 77776543
No 358
>smart00612 Kelch Kelch domain.
Probab=55.47 E-value=29 Score=21.94 Aligned_cols=41 Identities=24% Similarity=0.351 Sum_probs=24.8
Q ss_pred EEEEcCCCC---CCeEEEEeCCCCcEEEEeecCCCceEEEEEEe
Q 023864 118 LFESTGLYG---RSSVRRVALETGKVEAINQMEGSYFGEGLTLL 158 (276)
Q Consensus 118 LyeStG~yg---~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~ 158 (276)
||...|..+ .+.+.+||+++.+-....+++.....-+++..
T Consensus 2 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 45 (47)
T smart00612 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVI 45 (47)
T ss_pred EEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEe
Confidence 555555322 36788899999887655566654444444443
No 359
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=54.94 E-value=57 Score=34.48 Aligned_cols=75 Identities=11% Similarity=0.066 Sum_probs=50.6
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCC
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL 180 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tl 180 (276)
+.-..+|.+++.|..+.|++ ...+|++|.++||+-++++.++...-....+...+.-..+.-.++.+++.|+.=.
T Consensus 400 tg~Vr~iSvdp~G~wlasGs--dDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G 474 (733)
T KOG0650|consen 400 TGLVRSISVDPSGEWLASGS--DDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFG 474 (733)
T ss_pred CCeEEEEEecCCcceeeecC--CCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCcccc
Confidence 45557888888777777666 7889999999999999999998765443333333332233333444888887533
No 360
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=52.22 E-value=50 Score=35.48 Aligned_cols=73 Identities=14% Similarity=0.128 Sum_probs=48.9
Q ss_pred eeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCcEEE
Q 023864 193 GWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQAFGSSL 271 (276)
Q Consensus 193 GWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T~~v~l 271 (276)
-..+.|||..|++.- .++|++.||+++....+++-.. ...|-..|. ||+.||.= .+ |+.++|=....+-+|
T Consensus 17 d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHK-----DtVycVAys~dGkrFASG-~a-DK~VI~W~~klEG~L 88 (1081)
T KOG1538|consen 17 DIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHK-----DTVYCVAYAKDGKRFASG-SA-DKSVIIWTSKLEGIL 88 (1081)
T ss_pred eeEECCCCceEEEec-CCEEEEEeCCCccccccccccc-----ceEEEEEEccCCceeccC-CC-ceeEEEeccccccee
Confidence 346789999998865 4799999999998887766543 133434454 88999886 44 444444333336555
Q ss_pred EE
Q 023864 272 VY 273 (276)
Q Consensus 272 ~~ 273 (276)
-|
T Consensus 89 kY 90 (1081)
T KOG1538|consen 89 KY 90 (1081)
T ss_pred ee
Confidence 55
No 361
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=51.30 E-value=2.3e+02 Score=27.17 Aligned_cols=94 Identities=12% Similarity=0.040 Sum_probs=61.3
Q ss_pred eeEEEEEEecCCCCCceEEEEe-cCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC-----Cc-eEEE-EEEeCCEEE
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYA-ENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-----SY-FGEG-LTLLGEKLF 163 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~-~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~-----~~-FgEG-it~~g~~Ly 163 (276)
+-+|-.+|.- .+.|..-+.-. .+++++ |.+ ++..+|+||..|+|-+..+..-+ +| .|-= .++..+.=|
T Consensus 145 ~G~i~r~~rG-HtDYvH~vv~R~~~~qil-sG~--EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edW 220 (325)
T KOG0649|consen 145 DGRIQREYRG-HTDYVHSVVGRNANGQIL-SGA--EDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDW 220 (325)
T ss_pred CCEEEEEEcC-CcceeeeeeecccCccee-ecC--CCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCce
Confidence 3345555542 45565666552 235666 333 77899999999998766653221 11 2220 234456667
Q ss_pred EEEeeCCEEEEEeCCCCcEEEEEecC
Q 023864 164 QVTWLQKTGFIYDQNNLNKLEEFTHQ 189 (276)
Q Consensus 164 qlTwk~~~v~V~D~~tlk~i~~~~~~ 189 (276)
.+-=.+.++.++...+-+....||++
T Consensus 221 lvCGgGp~lslwhLrsse~t~vfpip 246 (325)
T KOG0649|consen 221 LVCGGGPKLSLWHLRSSESTCVFPIP 246 (325)
T ss_pred EEecCCCceeEEeccCCCceEEEecc
Confidence 77778889999999999999999987
No 362
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=51.11 E-value=67 Score=30.23 Aligned_cols=58 Identities=14% Similarity=0.113 Sum_probs=37.2
Q ss_pred CEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEE--ECCEEEEEeCCCCCeEEEE
Q 023864 201 KVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF--IKGEVWANVWQVWPCIPYA 262 (276)
Q Consensus 201 ~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~--idG~lyANvw~s~d~I~vI 262 (276)
..|++.--+..|+++||+.|++..++.+.. -|+--..-=.| +|.+|+|.+ -. ..|..|
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lps--vPv~i~~~G~~devdyRI~Va~-Rd-g~iy~i 255 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPS--VPVFISVSGQYDEVDYRIVVAC-RD-GKIYTI 255 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCC--CceEEEEEeeeeccceEEEEEe-CC-CEEEEE
Confidence 367776668899999999999999988863 33321111113 455677777 33 455443
No 363
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=50.95 E-value=1.9e+02 Score=28.21 Aligned_cols=160 Identities=16% Similarity=0.182 Sum_probs=98.8
Q ss_pred eEEEEecCC-----EEEEEcCCCCCCeEEEEeC--CCCcEEEEeecC---CCceEEEEEEeC-----CEEEEEEeeCCEE
Q 023864 108 QGLLYAEND-----TLFESTGLYGRSSVRRVAL--ETGKVEAINQME---GSYFGEGLTLLG-----EKLFQVTWLQKTG 172 (276)
Q Consensus 108 QGL~~~~dg-----~LyeStG~yg~S~I~~iDl--~tgkv~~~~~l~---~~~FgEGit~~g-----~~LyqlTwk~~~v 172 (276)
--|.|.||. .|+.++| +.+|.|-. +.+++.-+..|. ..-|+.-||-.+ -++....--+-++
T Consensus 100 tK~~wiPd~~g~~pdlLATs~----D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTC 175 (364)
T KOG0290|consen 100 TKLMWIPDSKGVYPDLLATSS----DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTC 175 (364)
T ss_pred cceEecCCccccCcchhhccc----CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeE
Confidence 356666662 3777777 45665544 455554443333 345666666542 4666777788999
Q ss_pred EEEeCCCCcE---E-EEEecCCCCeeE--EeeCCCEEEEECC-CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEEC
Q 023864 173 FIYDQNNLNK---L-EEFTHQMKDGWG--LATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK 245 (276)
Q Consensus 173 ~V~D~~tlk~---i-~~~~~~~~EGWG--LT~Dg~~L~vSDG-S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~id 245 (276)
.|+|..+... . +-|.+. +|=+- +..++..+|+|=| +..|.++|...++- .-.+.+++.|-.-|--|+|-+
T Consensus 176 TiWdie~~~~~~vkTQLIAHD-KEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH--STIIYE~p~~~~pLlRLswnk 252 (364)
T KOG0290|consen 176 TIWDIETGVSGTVKTQLIAHD-KEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH--STIIYEDPSPSTPLLRLSWNK 252 (364)
T ss_pred EEEEEeeccccceeeEEEecC-cceeEEEeccCccceEEEecCCCcEEEEEeccccc--ceEEecCCCCCCcceeeccCc
Confidence 9999988622 2 223444 45544 3446688999986 67899999887643 233444455444555667765
Q ss_pred C--EEEEEeCCCCCeEEEEeCCCCcEEEEEE
Q 023864 246 G--EVWANVWQVWPCIPYAYLQAFGSSLVYV 274 (276)
Q Consensus 246 G--~lyANvw~s~d~I~vIDp~T~~v~l~~~ 274 (276)
. ...|...+.-++|+++|...=...++.+
T Consensus 253 qDpnymATf~~dS~~V~iLDiR~P~tpva~L 283 (364)
T KOG0290|consen 253 QDPNYMATFAMDSNKVVILDIRVPCTPVARL 283 (364)
T ss_pred CCchHHhhhhcCCceEEEEEecCCCcceehh
Confidence 4 3446666644899999987655555443
No 364
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=50.78 E-value=2.5e+02 Score=27.46 Aligned_cols=139 Identities=16% Similarity=0.052 Sum_probs=85.2
Q ss_pred CCeEEEEeCCCCcEEEEe--ec--CCCceEEEEEE----eCCEEEEEEeeCCE---EEEEeCCCCcEEEEEecCCCCeeE
Q 023864 127 RSSVRRVALETGKVEAIN--QM--EGSYFGEGLTL----LGEKLFQVTWLQKT---GFIYDQNNLNKLEEFTHQMKDGWG 195 (276)
Q Consensus 127 ~S~I~~iDl~tgkv~~~~--~l--~~~~FgEGit~----~g~~LyqlTwk~~~---v~V~D~~tlk~i~~~~~~~~EGWG 195 (276)
-|-||.||.++++|..-- .+ +..-.||=-.+ .+|+|+..--..+. ++-+|..+.+...-...+...|-
T Consensus 77 YSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ps~KG~- 155 (339)
T PF09910_consen 77 YSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKLSSNPSLKGT- 155 (339)
T ss_pred cceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeeccCCCCcCce-
Confidence 377899999999874322 22 23445554443 25888887765543 66788888876555544322221
Q ss_pred EeeCCCEEEEEC---CCceEEEEcCCCCcEEEE-EEee--eCCEee--eeeeeeEEECCEEEEEeCCCCCeEEEEeCCCC
Q 023864 196 LATDGKVLFGSD---GSSMLYQIDPQTLKVIRK-DIVR--YKGREV--RNLNELEFIKGEVWANVWQVWPCIPYAYLQAF 267 (276)
Q Consensus 196 LT~Dg~~L~vSD---GS~~L~viDp~t~~vi~~-I~V~--~~g~pv--~~lNELE~idG~lyANvw~s~d~I~vIDp~T~ 267 (276)
+-.|-...=+-+ |-+.|+.+|..+.+.+.+ ..+. .+|.++ ..+-.|+-+.+++||-+-.- |.++||..+
T Consensus 156 ~~~D~a~F~i~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~rGG---i~vgnP~~~ 232 (339)
T PF09910_consen 156 LVHDYACFGINNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVRGG---IFVGNPYNG 232 (339)
T ss_pred EeeeeEEEeccccccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEEecc---EEEeCCCCC
Confidence 233433333322 577899999999887431 2221 244433 24455667788999988655 999999976
Q ss_pred cE
Q 023864 268 GS 269 (276)
Q Consensus 268 ~v 269 (276)
+.
T Consensus 233 e~ 234 (339)
T PF09910_consen 233 EE 234 (339)
T ss_pred Cc
Confidence 54
No 365
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=50.72 E-value=86 Score=35.51 Aligned_cols=88 Identities=13% Similarity=0.143 Sum_probs=57.6
Q ss_pred EEEEEecCCCCCceEEEEecCC-EEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEE
Q 023864 95 VVNEFPHDPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGF 173 (276)
Q Consensus 95 Vv~~~Phd~~aFTQGL~~~~dg-~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~ 173 (276)
+-.-.|-+...+.+|+.|..++ .++.+++ ...|...|++++...-.-.++.+.-+...+.+.+.+-.+|- +.-.
T Consensus 59 ~~s~~~~~gd~~i~s~~fl~d~~~i~v~~~---~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~--~~tl 133 (1265)
T KOG1920|consen 59 AESFLPEDGDDEIVSVQFLADTNSICVITA---LGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITG--RQTL 133 (1265)
T ss_pred eecccCcCCCcceEEEEEecccceEEEEec---CCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeC--CcEE
Confidence 3334455555699999998775 5776655 35677779999987776677777666666666666666663 3333
Q ss_pred EEeCCCCcEEEEEe
Q 023864 174 IYDQNNLNKLEEFT 187 (276)
Q Consensus 174 V~D~~tlk~i~~~~ 187 (276)
+++..++.++.+-+
T Consensus 134 l~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 134 LFMTKDFEPIAEKP 147 (1265)
T ss_pred EEEeccccchhccc
Confidence 44556666655443
No 366
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=50.44 E-value=30 Score=33.14 Aligned_cols=70 Identities=9% Similarity=0.075 Sum_probs=50.8
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCC-EEEEEEeeCCEEEEEe
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGE-KLFQVTWLQKTGFIYD 176 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~-~LyqlTwk~~~v~V~D 176 (276)
++=.+|..+.+|++++.++| -+.+||+|...|++.++..+.-.. =-..+++..+ .|..+.-++.++..++
T Consensus 251 npGv~gvrIRpD~KIlATAG--WD~RiRVyswrtl~pLAVLkyHsa-gvn~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 251 NPGVSGVRIRPDGKILATAG--WDHRIRVYSWRTLNPLAVLKYHSA-GVNAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred CCCccceEEccCCcEEeecc--cCCcEEEEEeccCCchhhhhhhhc-ceeEEEeCCCCchhhhccCCceEEeee
Confidence 34468999999999999999 889999999999886665443321 1234455555 6777777777777765
No 367
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=50.42 E-value=1.6e+02 Score=29.05 Aligned_cols=81 Identities=10% Similarity=0.187 Sum_probs=50.0
Q ss_pred CCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe------CCEEEEEEeeCCEEEEEeCCCCcEEEEEecCC------CCe
Q 023864 126 GRSSVRRVALETGKVEAINQMEGSYFGEGLTLL------GEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQM------KDG 193 (276)
Q Consensus 126 g~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~------g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~------~EG 193 (276)
+++.++++.+.+.|...+.. .....+.++.+. ++...++--.++.+.+|-.-.|+.+.+++.+. --.
T Consensus 233 Se~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ 311 (395)
T PF08596_consen 233 SESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSS 311 (395)
T ss_dssp -SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT
T ss_pred cccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccc
Confidence 57999999999998877766 555677777664 45666666688999999999999999998641 112
Q ss_pred eEEeeCCCEEEEEC
Q 023864 194 WGLATDGKVLFGSD 207 (276)
Q Consensus 194 WGLT~Dg~~L~vSD 207 (276)
--++.+|+.++.+.
T Consensus 312 ssis~~Gdi~~~~g 325 (395)
T PF08596_consen 312 SSISRNGDIFYWTG 325 (395)
T ss_dssp -EE-TTS-EEEE-S
T ss_pred cEECCCCCEEEEeC
Confidence 34778888777754
No 368
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=50.10 E-value=2.5e+02 Score=28.33 Aligned_cols=134 Identities=13% Similarity=0.158 Sum_probs=75.3
Q ss_pred eeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEE---EeecCCCceEEEEEE--eCCEEEEE
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEA---INQMEGSYFGEGLTL--LGEKLFQV 165 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~---~~~l~~~~FgEGit~--~g~~Lyql 165 (276)
.+++-+..+-+...+ ..+..|+++|.|..|+| ....|..|-...-+... ..++.+..+-.=..+ +++.+|-|
T Consensus 53 ~~V~y~s~Ls~H~~a-VN~vRf~p~gelLASg~--D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL 129 (434)
T KOG1009|consen 53 MKVEYLSSLSRHTRA-VNVVRFSPDGELLASGG--DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDL 129 (434)
T ss_pred eeEEEeecccCCcce-eEEEEEcCCcCeeeecC--CCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhh
Confidence 466777777663444 48999999999999988 77788888665211000 000111111011111 12444444
Q ss_pred Ee-----------eCCEEEEEeCCCCcEEEEEecCCCCeeEEeeCCCEEEE-ECCCce-EEEEcCCCCcEEEEEE
Q 023864 166 TW-----------LQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFG-SDGSSM-LYQIDPQTLKVIRKDI 227 (276)
Q Consensus 166 Tw-----------k~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~~L~v-SDGS~~-L~viDp~t~~vi~~I~ 227 (276)
-| -++.+.++|....+++....-...+--|.+.|--.-|+ +-++++ .+.++.+.-+++..+.
T Consensus 130 ~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~ 204 (434)
T KOG1009|consen 130 AWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHG 204 (434)
T ss_pred hccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeee
Confidence 44 56788899999999988875210122244444333233 446665 6777766666655554
No 369
>PF11178 DUF2963: Protein of unknown function (DUF2963); InterPro: IPR021348 This family of proteins with unknown function appears to be restricted to Mollicutes.
Probab=49.93 E-value=26 Score=24.75 Aligned_cols=36 Identities=28% Similarity=0.458 Sum_probs=27.2
Q ss_pred eEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCE
Q 023864 211 MLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGE 247 (276)
Q Consensus 211 ~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~ 247 (276)
.+.-.||.|++.++.+.-..+|.-+..++|-. ..|.
T Consensus 10 ~I~eydp~Tg~~iK~t~Y~~DGktI~~I~Eyd-~t~~ 45 (51)
T PF11178_consen 10 YITEYDPQTGKKIKKTYYNPDGKTIKYIYEYD-QTGK 45 (51)
T ss_pred EEEEECcccCcEeeeEEECCCCCEEEEEEEEC-CCCc
Confidence 45568999999999888888888887777655 3443
No 370
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Carotenoid oxygenases cleave a variety of carotenoids into a range of biologically important products, including apocarotenoids in plants that function as hormones, pigments, flavours, floral scents and defence compounds, and retinoids in animals that function as vitamins, visual pigments and signalling molecules []. Examples of carotenoid oxygenases include: Beta-carotene-15,15'-monooxygenase (BCDO1; 1.14.99.36 from EC) from animals, which cleaves beta-carotene symmetrically at the central double bond to yield two molecules of retinal []. Beta-carotene-9',10'-dioxygenase (BCDO2) from animals, which cleaves beta-carotene asymmetrically to apo-10'-beta-carotenal and beta-ionone, the latter being converted to retinoic acid. Lycopene is also oxidatively cleaved []. 9-cis-epoxycarotenoid dioxygenase from plants, which cleaves 9-cis xanthophylls to xanthoxin, a precursor of the hormone abscisic acid []. Apocarotenoid-15,15'-oxygenase from bacteria and cyanobacteria, which converts beta-apocarotenals rather than beta-carotene into retinal. This protein has a seven-bladed beta-propeller structure with four hisitidines that hold the iron active centre []. Retinal pigment RPE65 from animals, which in its soluble form binds all-trans retinol, and in its membrane-bound form binds all-trans retinyl esters. RPE65 is important for the production of 11-cis retinal during visual pigment regeneration []. ; PDB: 3NPE_A 2BIX_B 2BIW_A 3KVC_B 3FSN_B.
Probab=49.82 E-value=1e+02 Score=30.74 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=16.6
Q ss_pred CCeEEEEeCCCCcEEEEeecCCCceEE
Q 023864 127 RSSVRRVALETGKVEAINQMEGSYFGE 153 (276)
Q Consensus 127 ~S~I~~iDl~tgkv~~~~~l~~~~FgE 153 (276)
-+.|.++|++||+. .....+++.|++
T Consensus 396 ~~~l~k~D~~tg~~-~~~~~~~~~~~~ 421 (486)
T PF03055_consen 396 FNGLVKVDLETGEV-QRWSFGPGCFPG 421 (486)
T ss_dssp EEEEEEEETTTTEE-EEEE-TTTEEE-
T ss_pred CCEEEEEecccccc-eEEECCCCceec
Confidence 46888899999883 555666554443
No 371
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=49.66 E-value=55 Score=21.22 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=25.8
Q ss_pred EEEEecCCEEEEEcCCCC----CCeEEEEeCCCCcEEEEeec
Q 023864 109 GLLYAENDTLFESTGLYG----RSSVRRVALETGKVEAINQM 146 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg----~S~I~~iDl~tgkv~~~~~l 146 (276)
+.+.. ++.||.-.|.-+ .+.+.+||+++++-...-+|
T Consensus 6 ~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 6 AAVVV-GNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp EEEEE-TTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEE-CCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCC
Confidence 44555 589998777533 36788999999887655444
No 372
>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein. In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.
Probab=49.44 E-value=24 Score=30.14 Aligned_cols=68 Identities=9% Similarity=-0.091 Sum_probs=47.3
Q ss_pred EEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEE------ECC--EEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 202 VLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF------IKG--EVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 202 ~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~------idG--~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
.|...| .+..+.+.|..+++++..+.-+.+|.--.-+.-|+- ++. -.=.+-|.. ..+..+||.||+.+
T Consensus 42 ~l~f~d~~~G~v~V~~~~~G~~va~~~~g~~GFvrgvlR~l~R~R~~~gv~~~~Pf~L~r~~d-GrltL~Dp~Tg~~i 118 (135)
T TIGR03054 42 WLVFEDRPDGAVAVVETPDGRLVAILEPGQNGFVRVMLRGLARARARAGVAAEPPFRLTRYDN-GRLTLTDPATGWSI 118 (135)
T ss_pred EEEEecCCCCeEEEEECCCCCEEEEecCCCCchhhHhHHHHHHHHHHcCCCCCCCEEEEEEeC-CcEEEEcCCCCcEE
Confidence 466677 588889999999999999988876642222222221 111 244777888 99999999998765
No 373
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=49.12 E-value=96 Score=32.85 Aligned_cols=117 Identities=15% Similarity=0.128 Sum_probs=72.9
Q ss_pred EEEecCCCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecC-CCceEEEEEEeC--CEEEEEEeeCCEE
Q 023864 97 NEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLG--EKLFQVTWLQKTG 172 (276)
Q Consensus 97 ~~~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~-~~~FgEGit~~g--~~LyqlTwk~~~v 172 (276)
-.+.|+.. - .-+.++.+|. |-...+.-+.-+|.+.++..++.. .++- .+--..-.+++. -.||++| .+.+
T Consensus 516 ~~I~~~k~-i-~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ--~PF~kskG~vq~v~FHPs~p~lfVaT--q~~v 589 (733)
T KOG0650|consen 516 IVIKHPKS-I-RQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ--SPFRKSKGLVQRVKFHPSKPYLFVAT--QRSV 589 (733)
T ss_pred EEEecCCc-c-ceeeeecCCceEEEeccCCCcceEEEEeccccccc--CchhhcCCceeEEEecCCCceEEEEe--ccce
Confidence 34456332 2 4688887764 433344336667778887665542 2221 111133455555 6788888 6678
Q ss_pred EEEeCCCCcEEEEEecC--CCCeeEEeeCCCEEEEECCCceEEEEcCCC
Q 023864 173 FIYDQNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQT 219 (276)
Q Consensus 173 ~V~D~~tlk~i~~~~~~--~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t 219 (276)
-+||....++.++.-.+ .-.+..+.+.|+.|+++.-.+++-++|..-
T Consensus 590 RiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldl 638 (733)
T KOG0650|consen 590 RIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDL 638 (733)
T ss_pred EEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEccc
Confidence 89998776665554322 113456788899999999899999999653
No 374
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=49.09 E-value=99 Score=31.72 Aligned_cols=61 Identities=16% Similarity=0.174 Sum_probs=44.7
Q ss_pred CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEE-EEeCCCCCeEEEEeCCCCc--EEEEEE
Q 023864 209 SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVW-ANVWQVWPCIPYAYLQAFG--SSLVYV 274 (276)
Q Consensus 209 S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~ly-ANvw~s~d~I~vIDp~T~~--v~l~~~ 274 (276)
.+.||++| +++.++++++--..|..+.-. -+.++.+| +.--++ |-..+||...-+ .+|||+
T Consensus 405 ~N~vYilD-e~lnvvGkltGl~~gERIYAv---Rf~gdv~yiVTfrqt-DPlfviDlsNPenPkvlGeL 468 (603)
T COG4880 405 VNAVYILD-ENLNVVGKLTGLAPGERIYAV---RFVGDVLYIVTFRQT-DPLFVIDLSNPENPKVLGEL 468 (603)
T ss_pred cceeEEEc-CCCcEEEEEeccCCCceEEEE---EEeCceEEEEEEecc-CceEEEEcCCCCCCceeEEE
Confidence 48999999 679999988765455544422 36677888 677788 999999976533 667776
No 375
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=48.57 E-value=81 Score=21.37 Aligned_cols=35 Identities=11% Similarity=0.049 Sum_probs=25.1
Q ss_pred eEEEEEEeCCEEEEEEeeCCEEEEEeCCC---CcEEEEE
Q 023864 151 FGEGLTLLGEKLFQVTWLQKTGFIYDQNN---LNKLEEF 186 (276)
Q Consensus 151 FgEGit~~g~~LyqlTwk~~~v~V~D~~t---lk~i~~~ 186 (276)
.+.++.+.|+.+|+..+.++ +.|+|..+ -+.++++
T Consensus 3 ~a~~v~v~g~yaYva~~~~G-l~IvDISnPs~P~~v~~~ 40 (42)
T PF08309_consen 3 DARDVAVSGNYAYVADGNNG-LVIVDISNPSNPVLVGSY 40 (42)
T ss_pred eEEEEEEECCEEEEEeCCCC-EEEEECCCCCCCEEEEEe
Confidence 36789999999999988766 45777544 3445544
No 376
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Carotenoid oxygenases cleave a variety of carotenoids into a range of biologically important products, including apocarotenoids in plants that function as hormones, pigments, flavours, floral scents and defence compounds, and retinoids in animals that function as vitamins, visual pigments and signalling molecules []. Examples of carotenoid oxygenases include: Beta-carotene-15,15'-monooxygenase (BCDO1; 1.14.99.36 from EC) from animals, which cleaves beta-carotene symmetrically at the central double bond to yield two molecules of retinal []. Beta-carotene-9',10'-dioxygenase (BCDO2) from animals, which cleaves beta-carotene asymmetrically to apo-10'-beta-carotenal and beta-ionone, the latter being converted to retinoic acid. Lycopene is also oxidatively cleaved []. 9-cis-epoxycarotenoid dioxygenase from plants, which cleaves 9-cis xanthophylls to xanthoxin, a precursor of the hormone abscisic acid []. Apocarotenoid-15,15'-oxygenase from bacteria and cyanobacteria, which converts beta-apocarotenals rather than beta-carotene into retinal. This protein has a seven-bladed beta-propeller structure with four hisitidines that hold the iron active centre []. Retinal pigment RPE65 from animals, which in its soluble form binds all-trans retinol, and in its membrane-bound form binds all-trans retinyl esters. RPE65 is important for the production of 11-cis retinal during visual pigment regeneration []. ; PDB: 3NPE_A 2BIX_B 2BIW_A 3KVC_B 3FSN_B.
Probab=48.42 E-value=41 Score=33.56 Aligned_cols=134 Identities=25% Similarity=0.394 Sum_probs=77.0
Q ss_pred ceeeeEEEEEEecCCCCCceEEEEecCCEEEE-EcCC-C-----CCCeEEEEeCCCCcEEEEee------------cC--
Q 023864 89 SIYTIQVVNEFPHDPRAFTQGLLYAENDTLFE-STGL-Y-----GRSSVRRVALETGKVEAINQ------------ME-- 147 (276)
Q Consensus 89 ~~~t~~Vv~~~Phd~~aFTQGL~~~~dg~Lye-StG~-y-----g~S~I~~iDl~tgkv~~~~~------------l~-- 147 (276)
+....+|.-++|-+ .+|-.|-+.--.++ ..+. | |...|+.++++.|++..+-+ -+
T Consensus 13 ~~~~~~v~G~iP~~----L~G~~~RnGP~~~~~~~~~~~~H~FDGdGmv~~~~f~~g~v~y~~R~v~T~~~~~e~~~g~~ 88 (486)
T PF03055_consen 13 DPEDLEVEGEIPSW----LDGTLYRNGPGPFEVIGGRRYNHWFDGDGMVHAFRFDDGRVTYRNRFVRTEGYKAEREAGRR 88 (486)
T ss_dssp EEEC-EEEE---TT-----EEEEEEEEBEESE-ETTEE-SCGGGSEBEEEEEEEETTEEEEEEEE---HHHHHHHHHTSS
T ss_pred CccccEEeeeCCCc----CCCeeEEEcCcccccCCCcccccccCCCCEEEEEEECCCCceeEEEEeCcHHHHHHHhcCCc
Confidence 44457788888863 37887764323333 2221 2 77899999999998755431 11
Q ss_pred --CCceE----------------------------EEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecCC-CCeeEE
Q 023864 148 --GSYFG----------------------------EGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQM-KDGWGL 196 (276)
Q Consensus 148 --~~~Fg----------------------------EGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~-~EGWGL 196 (276)
...|| ..+..++++||.+ |..+.-+.+|+.||+.++...+.. -.|..+
T Consensus 89 ~~~g~~gt~~~~~~~~~~~~~~~~~~~~~~~~~aNt~v~~~~g~llAl-~E~g~p~~lDp~TLeT~g~~~~~~~l~~~~~ 167 (486)
T PF03055_consen 89 LYRGEFGTVPLPDPCRNIFRFPMPFFRGKPKNNANTNVIPHGGRLLAL-WEGGPPYELDPDTLETLGPFDFDGKLPGQPF 167 (486)
T ss_dssp -SC-TTTCTTCSTHHHHTCHHTTS--GGGB-----SEEEEETTEEEEE--TTSEEEEEETTTCEEEEEEEGGGTSSTS--
T ss_pred eecccccccccCchhhhhhhhccccccccCCCCceeeeEEECCEEEEE-EcCCCCEEechhHhhhcCcccccccccCccc
Confidence 11121 1355568999999 899999999999999999998751 123443
Q ss_pred e------e-CCCEEEE-EC-CC---c--eEEEEcCCCCcEEEEEEe
Q 023864 197 A------T-DGKVLFG-SD-GS---S--MLYQIDPQTLKVIRKDIV 228 (276)
Q Consensus 197 T------~-Dg~~L~v-SD-GS---~--~L~viDp~t~~vi~~I~V 228 (276)
| + +|..+.+ .+ |. . .++.+|++. +.++.+.+
T Consensus 168 tAHp~~Dp~tg~l~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~ 212 (486)
T PF03055_consen 168 TAHPKIDPETGELYNFGYSLGPEGSPKLTVYEIDPDG-KKIHRVPS 212 (486)
T ss_dssp -S--EEETTTTTEEEEEEECSSTTSEEEEEEEE-TTS-EEEEEEEE
T ss_pred ccCceEcccCCcEEEEEEEeccCCCCcEEEEEEcCcc-ceeEEeee
Confidence 3 3 3554433 33 22 2 477888764 55555555
No 377
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=47.87 E-value=44 Score=33.05 Aligned_cols=107 Identities=11% Similarity=0.061 Sum_probs=69.8
Q ss_pred EEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEe-ecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecC
Q 023864 111 LYAENDTLFESTGLYGRSSVRRVALETGKVEAIN-QMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ 189 (276)
Q Consensus 111 ~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~-~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~ 189 (276)
.|+|+|+-..|..+| .+.+-|.+|-++.+-. -+++-.+=| -..+.-.+.-+-++...++|+|...-+---.|.-+
T Consensus 15 ~fSp~g~yiAs~~~y---rlviRd~~tlq~~qlf~cldki~yie-W~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRY---RLVIRDSETLQLHQLFLCLDKIVYIE-WKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred eECCCCCeeeeeeee---EEEEeccchhhHHHHHHHHHHhhhee-eeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 478888888777765 7777788887653322 123222211 11222344445678889999998888877777754
Q ss_pred CCCeeE---EeeCCCEEEE-ECCCceEEEEcCCCCcE
Q 023864 190 MKDGWG---LATDGKVLFG-SDGSSMLYQIDPQTLKV 222 (276)
Q Consensus 190 ~~EGWG---LT~Dg~~L~v-SDGS~~L~viDp~t~~v 222 (276)
+.|.. -+|||+++.. |.-.-+|+|+-..|-+.
T Consensus 91 -~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~ 126 (447)
T KOG4497|consen 91 -QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG 126 (447)
T ss_pred -CCcceeeeECCCcceEeeeecceeEEEEEEecccee
Confidence 45544 3689977655 66788999988777654
No 378
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=47.77 E-value=85 Score=33.06 Aligned_cols=77 Identities=9% Similarity=0.015 Sum_probs=61.1
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC--CCceEEEEEEe-CCEEEEEEeeCCEEEEEeCCCC
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME--GSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNL 180 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~--~~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~tl 180 (276)
+.=+.-|++..||.|+.|.- .+-.+.+||+-..|++..+..+ .++|..-+... ++++.+.---+..+.+||.+.+
T Consensus 50 ~GCVN~LeWn~dG~lL~SGS--DD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~ 127 (758)
T KOG1310|consen 50 TGCVNCLEWNADGELLASGS--DDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSS 127 (758)
T ss_pred cceecceeecCCCCEEeecC--CcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccc
Confidence 34457799998999988744 6777889999988988888776 47887666553 7899988888999999999876
Q ss_pred cE
Q 023864 181 NK 182 (276)
Q Consensus 181 k~ 182 (276)
+.
T Consensus 128 ~~ 129 (758)
T KOG1310|consen 128 KE 129 (758)
T ss_pred cc
Confidence 54
No 379
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=46.87 E-value=1.5e+02 Score=30.20 Aligned_cols=81 Identities=16% Similarity=0.158 Sum_probs=53.1
Q ss_pred EEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC---CceEEEEEEeCCEEEEEEeeCCEE
Q 023864 96 VNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG---SYFGEGLTLLGEKLFQVTWLQKTG 172 (276)
Q Consensus 96 v~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~---~~FgEGit~~g~~LyqlTwk~~~v 172 (276)
|...||-..-| .|+|+-.++...|.| ....|..-|.+|.+.+....-.. ..|+-..... |.++.+.-.++.|
T Consensus 99 ~~~~~H~SNIF--~L~F~~~N~~~~SG~--~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V 173 (609)
T KOG4227|consen 99 VMEHPHRSNIF--SLEFDLENRFLYSGE--RWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLV 173 (609)
T ss_pred eccCccccceE--EEEEccCCeeEecCC--CcceeEeeecccceeeeeecccCcccceeecccCCC-CceEEEEecCceE
Confidence 45567767777 899975555444566 45567788998887655543232 4564433334 5666666789999
Q ss_pred EEEeCCCCc
Q 023864 173 FIYDQNNLN 181 (276)
Q Consensus 173 ~V~D~~tlk 181 (276)
.+||.....
T Consensus 174 ~~~D~Rd~~ 182 (609)
T KOG4227|consen 174 SFIDNRDRQ 182 (609)
T ss_pred EEEeccCCC
Confidence 999976554
No 380
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=45.51 E-value=2.3e+02 Score=30.37 Aligned_cols=60 Identities=22% Similarity=0.166 Sum_probs=46.6
Q ss_pred EEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecC---CC---CeeEEee-CCCEEEEECCCceEEEEcC
Q 023864 155 LTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ---MK---DGWGLAT-DGKVLFGSDGSSMLYQIDP 217 (276)
Q Consensus 155 it~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~---~~---EGWGLT~-Dg~~L~vSDGS~~L~viDp 217 (276)
++...++||++ .++++.+|+.-+++..+++..+ .+ +-+.+.+ +-+++.+|. .++||.+|.
T Consensus 238 f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s~nRvLLs~-~nkIyLld~ 304 (670)
T PF10395_consen 238 FCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPSPNRVLLSV-NNKIYLLDL 304 (670)
T ss_pred EEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecCCCCeEEEEc-CCEEEEEee
Confidence 46667999999 6889999999999999999866 11 4567654 556777776 578888883
No 381
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=44.28 E-value=6e+02 Score=29.94 Aligned_cols=63 Identities=19% Similarity=0.278 Sum_probs=45.1
Q ss_pred EEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC----CCceEEEEEEeCCEEEEEEeeCCEEEEEe
Q 023864 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME----GSYFGEGLTLLGEKLFQVTWLQKTGFIYD 176 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~----~~~FgEGit~~g~~LyqlTwk~~~v~V~D 176 (276)
-|++.|||.||++ ..+.||++-+ .|.+.--.+|+ .+-|=..+...++.||+-.-..++++.+-
T Consensus 369 ala~a~DGSl~VG----DfNyIRRI~~-dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~ 435 (1899)
T KOG4659|consen 369 ALAYAPDGSLIVG----DFNYIRRISQ-DGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVS 435 (1899)
T ss_pred eEEEcCCCcEEEc----cchheeeecC-CCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEec
Confidence 5788899999975 5688999865 56665555555 23343556666799999888888887653
No 382
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=43.74 E-value=3.1e+02 Score=27.58 Aligned_cols=95 Identities=12% Similarity=0.081 Sum_probs=44.5
Q ss_pred CCeEEEE-eCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCC-CeeEEeeCCCEE-
Q 023864 127 RSSVRRV-ALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMK-DGWGLATDGKVL- 203 (276)
Q Consensus 127 ~S~I~~i-Dl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~-EGWGLT~Dg~~L- 203 (276)
.+.|.++ +++ .+...+++++- -+++|-- +.|..+. .++.+..||..+.+.+++++.+ + ...-.++||+.+
T Consensus 88 ~~~I~I~kn~~-~~~~k~i~~~~--~~~~If~--G~LL~~~-~~~~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~va 160 (443)
T PF04053_consen 88 SSTIKIYKNFK-NEVVKSIKLPF--SVEKIFG--GNLLGVK-SSDFICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVA 160 (443)
T ss_dssp TS-EEEEETTE-E-TT-----SS---EEEEE---SSSEEEE-ETTEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEE
T ss_pred CCeEEEEEcCc-cccceEEcCCc--ccceEEc--CcEEEEE-CCCCEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEE
Confidence 4556664 332 22222334442 2444443 5555555 3457999999999999999876 2 333345666665
Q ss_pred EEECCCceEEEEcCC------------CCcEEEEEEe
Q 023864 204 FGSDGSSMLYQIDPQ------------TLKVIRKDIV 228 (276)
Q Consensus 204 ~vSDGS~~L~viDp~------------t~~vi~~I~V 228 (276)
++++-+=.|.-.|.+ .|+++.+|.+
T Consensus 161 l~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~ 197 (443)
T PF04053_consen 161 LVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISE 197 (443)
T ss_dssp EE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S
T ss_pred EEeCCeEEEEEecchhcccccccCchhceEEEEEecc
Confidence 344433344444566 6677776544
No 383
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=42.84 E-value=66 Score=30.90 Aligned_cols=50 Identities=20% Similarity=0.369 Sum_probs=31.5
Q ss_pred CCEEEEEeCCC-CcEEEEEecCCCCeeEEe------e--CC--CEEEEECCCceEEEEcCCC
Q 023864 169 QKTGFIYDQNN-LNKLEEFTHQMKDGWGLA------T--DG--KVLFGSDGSSMLYQIDPQT 219 (276)
Q Consensus 169 ~~~v~V~D~~t-lk~i~~~~~~~~EGWGLT------~--Dg--~~L~vSDGS~~L~viDp~t 219 (276)
...+||+|.+| .+.++++..+...| ||. . || +++|+.|=..+|+.+|...
T Consensus 180 ~~~lyi~d~~t~G~l~~~i~~~~~~~-gl~~~~~~D~d~DG~~D~vYaGDl~GnlwR~dl~~ 240 (335)
T PF05567_consen 180 GAALYILDADTTGALIKKIDVPGGSG-GLSSPAVVDSDGDGYVDRVYAGDLGGNLWRFDLSS 240 (335)
T ss_dssp -EEEEEEETTT---EEEEEEE--STT--EEEEEEE-TTSSSEE-EEEEEETTSEEEEEE--T
T ss_pred CcEEEEEECCCCCceEEEEecCCCCc-cccccEEEeccCCCeEEEEEEEcCCCcEEEEECCC
Confidence 46789999999 99999998753233 432 2 33 5889999778999998653
No 384
>PTZ00486 apyrase Superfamily; Provisional
Probab=42.42 E-value=3.5e+02 Score=26.73 Aligned_cols=30 Identities=10% Similarity=0.049 Sum_probs=22.3
Q ss_pred EEeCCEEEEEEeeCCEEEEEeCCCCcEEEE
Q 023864 156 TLLGEKLFQVTWLQKTGFIYDQNNLNKLEE 185 (276)
Q Consensus 156 t~~g~~LyqlTwk~~~v~V~D~~tlk~i~~ 185 (276)
...|++||...=+.|.+|.++.+.-+.+-.
T Consensus 121 v~FngkLys~DDrTGiVy~i~~~~~~~~Pw 150 (352)
T PTZ00486 121 VSFNGKLYGFDDRTGIVYEIDIDKKKAYPR 150 (352)
T ss_pred heeCCEEEEEeCCceEEEEEEcCCCcEeeE
Confidence 345899999998888888888555554433
No 385
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=42.34 E-value=2.5e+02 Score=24.93 Aligned_cols=136 Identities=14% Similarity=0.172 Sum_probs=81.2
Q ss_pred CCEEEEEcCCCCCCeEEEEeC-CCCcEEEEeecCCCceEEEEEEeC--CEEEEEEeeCCEEEEEeCCCCcEEEEE-----
Q 023864 115 NDTLFESTGLYGRSSVRRVAL-ETGKVEAINQMEGSYFGEGLTLLG--EKLFQVTWLQKTGFIYDQNNLNKLEEF----- 186 (276)
Q Consensus 115 dg~LyeStG~yg~S~I~~iDl-~tgkv~~~~~l~~~~FgEGit~~g--~~LyqlTwk~~~v~V~D~~tlk~i~~~----- 186 (276)
+.+||.+|-. | |..++. ...+..+..+... -+=|++.. +.|.++. ++.++++|.+++.....-
T Consensus 7 ~~~L~vGt~~-G---l~~~~~~~~~~~~~i~~~~~---I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 7 GDRLLVGTED-G---LYVYDLSDPSKPTRILKLSS---ITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred CCEEEEEECC-C---EEEEEecCCccceeEeecce---EEEEEEecccCEEEEEc--CCccEEEEchhhccccccccccc
Confidence 4678887652 3 888888 3333322222222 34555655 6777776 699999999888776622
Q ss_pred --------ecCCCCeeE-Ee-----eCCCEEEEECCCceEEEEcC----CCC-cEEEEEEeeeCCEeeeeeeeeEEECCE
Q 023864 187 --------THQMKDGWG-LA-----TDGKVLFGSDGSSMLYQIDP----QTL-KVIRKDIVRYKGREVRNLNELEFIKGE 247 (276)
Q Consensus 187 --------~~~~~EGWG-LT-----~Dg~~L~vSDGS~~L~viDp----~t~-~vi~~I~V~~~g~pv~~lNELE~idG~ 247 (276)
..+...|.. ++ ..+..|.++-.. +|.++.. ..| +..+++.+.+ .+-.|++.++.
T Consensus 78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk-~i~i~~~~~~~~~f~~~~ke~~lp~------~~~~i~~~~~~ 150 (275)
T PF00780_consen 78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK-KILIYEWNDPRNSFSKLLKEISLPD------PPSSIAFLGNK 150 (275)
T ss_pred cccccccccccccCCeeEEeeccccccceEEEEEECC-EEEEEEEECCcccccceeEEEEcCC------CcEEEEEeCCE
Confidence 111112333 22 122456665543 5555543 345 7888888875 44456677888
Q ss_pred EEEEeCCCCCeEEEEeCCCCcE
Q 023864 248 VWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 248 lyANvw~s~d~I~vIDp~T~~v 269 (276)
|.+.. + +....||..++..
T Consensus 151 i~v~~--~-~~f~~idl~~~~~ 169 (275)
T PF00780_consen 151 ICVGT--S-KGFYLIDLNTGSP 169 (275)
T ss_pred EEEEe--C-CceEEEecCCCCc
Confidence 77776 5 7788899887653
No 386
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=42.29 E-value=1.2e+02 Score=29.40 Aligned_cols=53 Identities=21% Similarity=0.314 Sum_probs=32.9
Q ss_pred CeeEEeeCCCEEEEECC-C---------------ceEEEEcCCCCcEEEE----EEeeeCCE--------eee--eeeee
Q 023864 192 DGWGLATDGKVLFGSDG-S---------------SMLYQIDPQTLKVIRK----DIVRYKGR--------EVR--NLNEL 241 (276)
Q Consensus 192 EGWGLT~Dg~~L~vSDG-S---------------~~L~viDp~t~~vi~~----I~V~~~g~--------pv~--~lNEL 241 (276)
|||+.-.+-+.|-..|| + ..|.++|++...++.. ..+++.|+ .+. .+||+
T Consensus 97 egw~vGe~sqll~T~DgGqsWARi~~~e~~eg~~~sI~f~d~q~g~m~gd~Gail~T~DgGk~Wk~l~e~~v~~~~~n~i 176 (339)
T COG4447 97 EGWIVGEPSQLLHTTDGGQSWARIPLSEKLEGFPDSITFLDDQRGEMLGDQGAILKTTDGGKNWKALVEKAVGLAVPNEI 176 (339)
T ss_pred cccccCCcceEEEecCCCcchhhchhhcCCCCCcceeEEecchhhhhhcccceEEEecCCcccHhHhcccccchhhhhhh
Confidence 78887666655555663 2 2788999888776543 23344332 333 78888
Q ss_pred EEE
Q 023864 242 EFI 244 (276)
Q Consensus 242 E~i 244 (276)
+..
T Consensus 177 a~s 179 (339)
T COG4447 177 ARS 179 (339)
T ss_pred hhh
Confidence 865
No 387
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=42.25 E-value=1.2e+02 Score=31.18 Aligned_cols=71 Identities=21% Similarity=0.251 Sum_probs=46.3
Q ss_pred EEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCCCeeEEeeCCCEEEE---ECCCc--eEEEEcCCCCcEEEEEEe
Q 023864 154 GLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFG---SDGSS--MLYQIDPQTLKVIRKDIV 228 (276)
Q Consensus 154 Git~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~~L~v---SDGS~--~L~viDp~t~~vi~~I~V 228 (276)
||-+.+..= .-+.+-++|+++.+.+.+=++..--|.++...++.+++ .+|.. +|..|||+|+++++.-..
T Consensus 364 ~Lkv~d~~~-----~ls~LvllD~~tg~~l~~S~~~~Ir~r~~~~~~~~~vaI~g~~G~~~ikLvlid~~tLev~kes~~ 438 (489)
T PF05262_consen 364 GLKVLDPNH-----YLSELVLLDSDTGDTLKRSPVNGIRGRTFYEREDDLVAIAGCSGNAAIKLVLIDPETLEVKKESED 438 (489)
T ss_pred EEEEecCCC-----cceeEEEEeCCCCceecccccceeccceeEEcCCCEEEEeccCCchheEEEecCcccceeeeeccc
Confidence 566554321 23677889999999888766543366777665544433 34544 667778999999876554
Q ss_pred e
Q 023864 229 R 229 (276)
Q Consensus 229 ~ 229 (276)
.
T Consensus 439 ~ 439 (489)
T PF05262_consen 439 E 439 (489)
T ss_pred c
Confidence 3
No 388
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=42.16 E-value=2.9e+02 Score=29.36 Aligned_cols=100 Identities=25% Similarity=0.242 Sum_probs=57.0
Q ss_pred CCCCcEEEEeecCC-CceEEEEEEeCCEEEEEEeeC--CEEEEEeCCCCcEEEEEecCCCCeeE---EeeCCCEEEEEC-
Q 023864 135 LETGKVEAINQMEG-SYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLNKLEEFTHQMKDGWG---LATDGKVLFGSD- 207 (276)
Q Consensus 135 l~tgkv~~~~~l~~-~~FgEGit~~g~~LyqlTwk~--~~v~V~D~~tlk~i~~~~~~~~EGWG---LT~Dg~~L~vSD- 207 (276)
++.|++++ .-.|. +.-=|+++..+++++..+..+ +++.|++.+. ..+++++.+.+.-.+ ...||+.+|+..
T Consensus 282 ~~~g~~~a-~~~P~~~~~le~v~tt~~~~va~~l~nv~~~l~v~~~~g-~~~~~v~l~~~ga~~~~~~~~~g~ev~l~~t 359 (648)
T COG1505 282 LELGKVIA-EFIPEEEQSLEQVVTTKDKLVAGTLDNVSGRLEVYDLKG-ERIEEVELPPPGALGMGSADKDGDEVFLAFT 359 (648)
T ss_pred cccCceeE-EecCCcccceeeeEEEcCeEEeeeehhccceEEEeccCc-eEeeecccCCccceeeccCCCCCcEEEEEee
Confidence 44555555 33332 333477888889988877654 5788898777 777777655212122 234677666644
Q ss_pred C---CceEE-----------------EEcCCCCcEEEEEEeeeCCEeee
Q 023864 208 G---SSMLY-----------------QIDPQTLKVIRKDIVRYKGREVR 236 (276)
Q Consensus 208 G---S~~L~-----------------viDp~t~~vi~~I~V~~~g~pv~ 236 (276)
+ -.+++ .+|++++++.....+..+|..|+
T Consensus 360 ~F~tP~~~~r~~~~~~eLe~ik~~p~~FDa~~~~veQ~~atSkDGT~IP 408 (648)
T COG1505 360 SFTTPSTLYRLDLFGGELEVIREQPVQFDADNYEVEQFFATSKDGTRIP 408 (648)
T ss_pred cccCCCceEEEecCCceehhhhhccCCcCccCceEEEEEEEcCCCcccc
Confidence 2 22333 34555555555555555665444
No 389
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=40.69 E-value=60 Score=17.44 Aligned_cols=28 Identities=4% Similarity=0.162 Sum_probs=18.2
Q ss_pred CCceEEEEecCCEEEEEcCCCCCCeEEEEe
Q 023864 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVA 134 (276)
Q Consensus 105 aFTQGL~~~~dg~LyeStG~yg~S~I~~iD 134 (276)
.....+.+.+++.++.+++ .++.++.||
T Consensus 13 ~~i~~~~~~~~~~~~~~~~--~d~~~~~~~ 40 (40)
T smart00320 13 GPVTSVAFSPDGKYLASAS--DDGTIKLWD 40 (40)
T ss_pred CceeEEEECCCCCEEEEec--CCCeEEEcC
Confidence 3447888887766666555 456676664
No 390
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=40.38 E-value=3.4e+02 Score=28.74 Aligned_cols=132 Identities=10% Similarity=0.080 Sum_probs=73.6
Q ss_pred eEEEEEEecCCCCCceEEEEecCCEEEEEcC---------CCCCCeEEEEeCCCCcEEEEeecCCCceEE--EEEEeCCE
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTG---------LYGRSSVRRVALETGKVEAINQMEGSYFGE--GLTLLGEK 161 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG---------~yg~S~I~~iDl~tgkv~~~~~l~~~~FgE--Git~~g~~ 161 (276)
+.-++.++| +.+|=..|+|+.+-+++=+ .-....+.+||..||.+.+..+........ =+-..-|.
T Consensus 241 f~r~~RF~H---p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~Dd 317 (698)
T KOG2314|consen 241 FDRIQRFYH---PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDD 317 (698)
T ss_pred HHHHHhccC---CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCC
Confidence 344566666 4566788998755433211 113367999999999988887664321100 01222344
Q ss_pred EEEEEeeCCEEEEEeCCCCcEEEE--EecCCCCeeEEeeCCCEE-EEEC----CCceEEEEcCCCCcEEEEEE
Q 023864 162 LFQVTWLQKTGFIYDQNNLNKLEE--FTHQMKDGWGLATDGKVL-FGSD----GSSMLYQIDPQTLKVIRKDI 227 (276)
Q Consensus 162 LyqlTwk~~~v~V~D~~tlk~i~~--~~~~~~EGWGLT~Dg~~L-~vSD----GS~~L~viDp~t~~vi~~I~ 227 (276)
=|.+-...+.+.||+..++.++.. +..++-.+...+|-+..| |-+- --.++..+-.-+.+.+++..
T Consensus 318 Ky~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~n 390 (698)
T KOG2314|consen 318 KYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKN 390 (698)
T ss_pred ceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecc
Confidence 455666679999999988887643 333211222234444333 2222 24456666666666655543
No 391
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.33 E-value=32 Score=38.21 Aligned_cols=77 Identities=16% Similarity=0.151 Sum_probs=59.6
Q ss_pred cCCCCCceEEEEecCC-EEEEEcCCCCCCeEEEEeCCCCcEEEEeecC-CCceEEEEEEeCCEEEEEEeeCCEEEEEeCC
Q 023864 101 HDPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVTWLQKTGFIYDQN 178 (276)
Q Consensus 101 hd~~aFTQGL~~~~dg-~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~-~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~ 178 (276)
|....- +|.+.+.+ +|..|+| .+++|..|+++||+++..++.. .-+|=.-.+..+--++.+-.-+|++-||...
T Consensus 252 H~~Gil--slsWc~~D~~lllSsg--kD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 252 HQRGIL--SLSWCPQDPRLLLSSG--KDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred ccccee--eeccCCCCchhhhccc--CCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeee
Confidence 444443 67787765 8999999 9999999999999999987653 3466555555667788999999999999876
Q ss_pred CCc
Q 023864 179 NLN 181 (276)
Q Consensus 179 tlk 181 (276)
+..
T Consensus 328 ~~~ 330 (1049)
T KOG0307|consen 328 GTD 330 (1049)
T ss_pred cCC
Confidence 554
No 392
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=39.94 E-value=52 Score=27.71 Aligned_cols=56 Identities=7% Similarity=0.105 Sum_probs=37.5
Q ss_pred CCchhhHHHHHHHhhhhhhccccccccCCCCCCCCceeeeEEEEEEecCCCCCceEEEEecC
Q 023864 54 GIPAVMLIFFFLCGFVLLCISSNMWIRFPGVDQSPSIYTIQVVNEFPHDPRAFTQGLLYAEN 115 (276)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~Vv~~~Phd~~aFTQGL~~~~d 115 (276)
.+.+.+++++++++|.++. +.|.. ....+|.....+.++..-....|.-=+++.++
T Consensus 5 Wvt~~Is~~ill~viglv~---y~~l~---~~~~pp~l~v~~~~~~r~~~gqyyVpF~V~N~ 60 (122)
T TIGR02588 5 WVTFGISTLILAAMFGLVA---YDWLR---YSNKAAVLEVAPAEVERMQTGQYYVPFAIHNL 60 (122)
T ss_pred hhhHHHHHHHHHHHHHHHH---HHhhc---cCCCCCeEEEeehheeEEeCCEEEEEEEEEeC
Confidence 4567888888888776644 56777 56667888888877766434445445566653
No 393
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=39.73 E-value=77 Score=32.54 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=20.8
Q ss_pred EEEEeCCCCcEEEEEecC-CCCeeE--EeeCCCEEEEE
Q 023864 172 GFIYDQNNLNKLEEFTHQ-MKDGWG--LATDGKVLFGS 206 (276)
Q Consensus 172 v~V~D~~tlk~i~~~~~~-~~EGWG--LT~Dg~~L~vS 206 (276)
+...|+.+.++..-+.-+ ..|--| +++||+.||++
T Consensus 482 ~~~~~~~~g~~~rf~~~P~gaE~tG~~fspDg~tlFvn 519 (524)
T PF05787_consen 482 VWAYDPDTGELKRFLVGPNGAEITGPCFSPDGRTLFVN 519 (524)
T ss_pred eeeccccccceeeeccCCCCcccccceECCCCCEEEEE
Confidence 556676665554333222 134334 77999999985
No 394
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=39.35 E-value=1.7e+02 Score=31.98 Aligned_cols=108 Identities=16% Similarity=0.097 Sum_probs=73.3
Q ss_pred EEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCc--eEEEEEEeCCEEEEEEe-eCCEEEEEeCCCCcEEEE
Q 023864 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY--FGEGLTLLGEKLFQVTW-LQKTGFIYDQNNLNKLEE 185 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~--FgEGit~~g~~LyqlTw-k~~~v~V~D~~tlk~i~~ 185 (276)
-++++|.-++....+ -+-.|++||.++||..+..+=...- =..-+.++..-+|++|- -++++.+||--+.+..++
T Consensus 601 Dm~Vdp~~k~v~t~c--QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~ 678 (1080)
T KOG1408|consen 601 DMAVDPTSKLVVTVC--QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ 678 (1080)
T ss_pred EeeeCCCcceEEEEe--cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence 455665544444333 4556999999999988776533211 11234455677888876 557788999999998887
Q ss_pred Ee-cC-CCCeeEEeeCCCEEEEECCCceEEEEcCC
Q 023864 186 FT-HQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQ 218 (276)
Q Consensus 186 ~~-~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~ 218 (276)
.. +. .--|.-+++|=++|+-.-|+.-|+++-..
T Consensus 679 m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 679 MTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred hcCcchheeeeeecccchhheeecCCceEEEEECc
Confidence 63 11 23456689999999988888888888743
No 395
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=39.13 E-value=1.7e+02 Score=29.73 Aligned_cols=84 Identities=18% Similarity=0.277 Sum_probs=50.4
Q ss_pred EEEeCCEEEEEEeeCCEEEEEeCC---CCcEEEEEecCCCCeeE-EeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEee
Q 023864 155 LTLLGEKLFQVTWLQKTGFIYDQN---NLNKLEEFTHQMKDGWG-LATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVR 229 (276)
Q Consensus 155 it~~g~~LyqlTwk~~~v~V~D~~---tlk~i~~~~~~~~EGWG-LT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~ 229 (276)
|.+++..||+.+|.-+.+-.||.. +-++.+++-.+ | +.......++.+ |-. .-++...+.++ .
T Consensus 319 ISmDDRFLYvs~WLHGDirQYdIsDP~n~kLtgQi~lG-----G~i~~~s~vkvl~~e~~~----~~~ea~~vKGr---k 386 (476)
T KOG0918|consen 319 ISLDDRFLYVSNWLHGDIRQYDISDPKNPKLTGQIFLG-----GSIQKGSPVKVLEEEGLK----KQPEALYVKGR---K 386 (476)
T ss_pred EeecCcEEEEEeeeecceeeeccCCCCCcceEEEEEEC-----cEeecCCceEEecccccc----CCCccceecCc---c
Confidence 566788999999999999999854 55667788776 4 444444545543 211 22333333321 1
Q ss_pred eCCEeeeeeeeeEEECCEEEEEe
Q 023864 230 YKGREVRNLNELEFIKGEVWANV 252 (276)
Q Consensus 230 ~~g~pv~~lNELE~idG~lyANv 252 (276)
..|.| +.-+|-.++.+|||.+
T Consensus 387 l~GGP--QMlQLSLDGKRLYVt~ 407 (476)
T KOG0918|consen 387 LRGGP--QMLQLSLDGKRLYVTN 407 (476)
T ss_pred ccCCc--eeEEeccCCcEEEEEc
Confidence 12334 3444556566799875
No 396
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=38.70 E-value=3.5e+02 Score=26.67 Aligned_cols=139 Identities=13% Similarity=0.123 Sum_probs=80.6
Q ss_pred EEeCCCCcEEEEeecCC--CceEEEEEEe-CCEEEEEEeeCCEEEEEeCCCCcE----EEEEecC--CCCeeEEeeCCCE
Q 023864 132 RVALETGKVEAINQMEG--SYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNK----LEEFTHQ--MKDGWGLATDGKV 202 (276)
Q Consensus 132 ~iDl~tgkv~~~~~l~~--~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~tlk~----i~~~~~~--~~EGWGLT~Dg~~ 202 (276)
.+++...++.+..+++. +.=--.+++. .+.--.+--.+.-.|.+..++.+. ...|... .-.-|-++|+|+.
T Consensus 164 ~l~L~~a~Vt~V~~vG~GdRVCVDtcsll~~gEGmLVGs~s~glfLVhsEt~~~pYva~RPFRVNAGaVhaYv~~pgg~T 243 (344)
T PRK02290 164 KLELVPATVTRVEPVGMGDRVCVDTCSLMEEGEGMLVGSSSRGMFLVHAETEENPYVASRPFRVNAGAVHAYVRVPGDKT 243 (344)
T ss_pred cceeEEEEEEEEEEcCCccEEEEEccccCCCCceEEEcccCCcEEEEecccccCCCccCCCeeEecCcceeEEEcCCCcc
Confidence 35565566655555553 2111111111 244444555666677777776542 1334332 3356778999999
Q ss_pred EEEEC--CCceEEEEcCCCCcE---EEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCC----------eEEEEeCCCC
Q 023864 203 LFGSD--GSSMLYQIDPQTLKV---IRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWP----------CIPYAYLQAF 267 (276)
Q Consensus 203 L~vSD--GS~~L~viDp~t~~v---i~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d----------~I~vIDp~T~ 267 (276)
-|.|+ ..+.|.++|.+-..- ++++++ ..+|+ .+=|.|+ +|+-+-.+-|... .|+|-|.+-|
T Consensus 244 ~YLsEL~sG~eVlvVd~~G~tR~~~VGRvKI--E~RPL-~lIeAe~-~g~~~~viLQnaetIrlv~~dG~~vsVt~Lk~G 319 (344)
T PRK02290 244 RYLSELRSGDEVLVVDADGNTREAIVGRVKI--EKRPL-LLIEAEY-GGKRIRTILQNAETIRLVTPDGKPVSVVDLKPG 319 (344)
T ss_pred hhhHhhcCCCEEEEEeCCCCEEEEEeeEEEE--eeccE-EEEEEEe-CCeEEEEEEecCcEEEEECCCCCEeeeeecCCC
Confidence 99999 588999999664322 233333 34776 4557777 6754443333312 3677777777
Q ss_pred cEEEEEE
Q 023864 268 GSSLVYV 274 (276)
Q Consensus 268 ~v~l~~~ 274 (276)
..+|+|+
T Consensus 320 D~VL~~~ 326 (344)
T PRK02290 320 DEVLGYL 326 (344)
T ss_pred CEEEEEe
Confidence 7888776
No 397
>PF12435 DUF3678: Protein of unknown function (DUF3678) ; InterPro: IPR022146 This domain family is found in eukaryotes, and is approximately 40 amino acids in length.
Probab=38.52 E-value=13 Score=25.13 Aligned_cols=11 Identities=64% Similarity=0.501 Sum_probs=5.2
Q ss_pred CCCCccccccc
Q 023864 33 SSSSSSCMASN 43 (276)
Q Consensus 33 ~~~~~~~~~~~ 43 (276)
++++|+||+.+
T Consensus 16 ~~ssS~~~~H~ 26 (38)
T PF12435_consen 16 SSSSSSSMLHR 26 (38)
T ss_pred Ccccccchhhh
Confidence 33445555543
No 398
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=37.95 E-value=2e+02 Score=23.04 Aligned_cols=36 Identities=11% Similarity=0.141 Sum_probs=25.9
Q ss_pred EEEEecCCEEEEEcCC--CCCCeEEEEeCCCCcEEEEeecC
Q 023864 109 GLLYAENDTLFESTGL--YGRSSVRRVALETGKVEAINQME 147 (276)
Q Consensus 109 GL~~~~dg~LyeStG~--yg~S~I~~iDl~tgkv~~~~~l~ 147 (276)
|+.+ ||.||-.+-. ..++.|-.+|+++.+. +.+++|
T Consensus 1 gici--nGvly~~a~~~~~~~~~IvsFDv~~E~f-~~i~~P 38 (129)
T PF08268_consen 1 GICI--NGVLYWLAWSEDSDNNVIVSFDVRSEKF-RFIKLP 38 (129)
T ss_pred CEEE--CcEEEeEEEECCCCCcEEEEEEcCCceE-EEEEee
Confidence 4555 4777765443 3578899999999887 677776
No 399
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=37.79 E-value=76 Score=25.26 Aligned_cols=35 Identities=20% Similarity=0.137 Sum_probs=28.7
Q ss_pred EEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeee
Q 023864 195 GLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 195 GLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~ 230 (276)
||..-...|+.+| ..+|..+||.+..+.++|....
T Consensus 12 glf~kkR~LiLTd-~PrL~yvdp~~~~~KgeIp~s~ 46 (89)
T cd01262 12 GLFAKKRQLILTN-GPRLIYVDPVKKVVKGEIPWSD 46 (89)
T ss_pred ccccceeeEEEec-CceEEEEcCCcCeEEeEecccc
Confidence 4666667788899 5788888999999999998875
No 400
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=37.42 E-value=2.4e+02 Score=28.36 Aligned_cols=36 Identities=31% Similarity=0.332 Sum_probs=27.1
Q ss_pred eeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCC
Q 023864 197 ATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKG 232 (276)
Q Consensus 197 T~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g 232 (276)
.+||-.|.-+- |++.|.++||.+.+-+.-+.-+.+|
T Consensus 204 n~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg 240 (445)
T KOG2139|consen 204 NEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGG 240 (445)
T ss_pred cCCCCEEeecccCcceEEEEcCCCCCcccccccCCCc
Confidence 35787777766 9999999999999877666444433
No 401
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=37.15 E-value=85 Score=20.66 Aligned_cols=34 Identities=9% Similarity=0.124 Sum_probs=19.7
Q ss_pred EEEEecCCEEEEEcCCCCC----CeEEEEeCCCCcEEE
Q 023864 109 GLLYAENDTLFESTGLYGR----SSVRRVALETGKVEA 142 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~----S~I~~iDl~tgkv~~ 142 (276)
.....++++||.-.|..++ +.+.+||+++++-.+
T Consensus 6 ~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~ 43 (49)
T PF13418_consen 6 SAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTR 43 (49)
T ss_dssp EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE
T ss_pred EEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEE
Confidence 3444556788886775443 378899999987644
No 402
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.15 E-value=70 Score=30.47 Aligned_cols=97 Identities=19% Similarity=0.223 Sum_probs=55.9
Q ss_pred EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCC-ceEEEEEEe----CCEEEEEE-eeCCEEEEEeCC------CCcEEEE
Q 023864 118 LFESTGLYGRSSVRRVALETGKVEAINQMEGS-YFGEGLTLL----GEKLFQVT-WLQKTGFIYDQN------NLNKLEE 185 (276)
Q Consensus 118 LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~-~FgEGit~~----g~~LyqlT-wk~~~v~V~D~~------tlk~i~~ 185 (276)
-|+|+| -++.|.+|+.+++.-+....|..+ .|---++.- ..+-+++. -+++++++|-.+ ..+++++
T Consensus 177 rlvSgG--cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~ 254 (299)
T KOG1332|consen 177 RLVSGG--CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE 254 (299)
T ss_pred eeeccC--CccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccccc
Confidence 456777 788899999988743222223221 121112221 12233332 366777776543 2345566
Q ss_pred EecC-CCCeeEEeeCCCEEEEECCCceEEEEcCC
Q 023864 186 FTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQ 218 (276)
Q Consensus 186 ~~~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~ 218 (276)
|+-. -.--|.+| |..|-||+|+++++.+-++
T Consensus 255 f~~~~w~vSWS~s--Gn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 255 FPDVVWRVSWSLS--GNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred CCcceEEEEEecc--ccEEEEecCCcEEEEEEeC
Confidence 6533 12445555 9999999999999998755
No 403
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=37.02 E-value=6.4e+02 Score=28.96 Aligned_cols=117 Identities=12% Similarity=0.088 Sum_probs=74.9
Q ss_pred EEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEE---EeC---CEEEEEEeeCCEEEEEeC-C---
Q 023864 110 LLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLT---LLG---EKLFQVTWLQKTGFIYDQ-N--- 178 (276)
Q Consensus 110 L~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit---~~g---~~LyqlTwk~~~v~V~D~-~--- 178 (276)
+.|+|= ..++. + ++++.|++||.+.++..+....+. ++..+++ +.| ..|-.+---+|.+-||+. .
T Consensus 1070 ~~~hpf~p~i~~-a--d~r~~i~vwd~e~~~~l~~F~n~~-~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1070 LKFHPFEPQIAA-A--DDRERIRVWDWEKGRLLNGFDNGA-FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred eeecCCCceeEE-c--CCcceEEEEecccCceeccccCCC-CCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 555543 34664 2 378999999999999988765553 3334444 333 455555667788888764 2
Q ss_pred -CCcEEEEEe-----cCCCCeeEEe--e--CCCEEEEECCCceEEEEcCCCCcEEEEEEeee
Q 023864 179 -NLNKLEEFT-----HQMKDGWGLA--T--DGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 179 -tlk~i~~~~-----~~~~EGWGLT--~--Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~ 230 (276)
+.|.+..+. .+...|-|+- . ...+|++|-+...|.++|...=++.+.|..+.
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s 1207 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGS 1207 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCC
Confidence 233333332 1123444432 2 23578887779999999999988888888874
No 404
>COG4222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.96 E-value=2.1e+02 Score=28.52 Aligned_cols=126 Identities=17% Similarity=0.070 Sum_probs=72.2
Q ss_pred eeeEEEEEEe-cC---CCCC------ceEEEEecCCEEEEEcCC-----CCCCeEEEEeCCCCcEEEEeecCCC------
Q 023864 91 YTIQVVNEFP-HD---PRAF------TQGLLYAENDTLFESTGL-----YGRSSVRRVALETGKVEAINQMEGS------ 149 (276)
Q Consensus 91 ~t~~Vv~~~P-hd---~~aF------TQGL~~~~dg~LyeStG~-----yg~S~I~~iDl~tgkv~~~~~l~~~------ 149 (276)
.+++++..+= +| ..+| +.|-...+.+..+||+-- .-.=.|.++|+. |+++....++.+
T Consensus 114 g~v~~~~~~~L~Dp~~k~pf~i~~~~~~~ralt~~d~~~~s~~~~~igdefgP~l~~f~~~-Gk~~~~~~~~~~~~~~~~ 192 (391)
T COG4222 114 GKVTPLDTTFLSDPNKKTPFPITGEDPEGRALTPADFDVESSQGAWIGDEFGPYLLEFDAN-GKLVRVLEVPVRFLPPDN 192 (391)
T ss_pred cceEEeEEEEeecCCCCCCccccccCchhhcccCCCcceeeccccccccccCcceEEECCC-CccccccccccccCcCCC
Confidence 3455666552 22 3455 456666665666776552 112357778876 877766654422
Q ss_pred -------ceEEEEEEeC--CEEEEEEee---------------CCEEEEEeCCCCcEEEEEecCCCCeeEEeeCCCEEEE
Q 023864 150 -------YFGEGLTLLG--EKLFQVTWL---------------QKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFG 205 (276)
Q Consensus 150 -------~FgEGit~~g--~~LyqlTwk---------------~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~~L~v 205 (276)
.--||+++.. .+||.++.. .-++..||+++.+.+.++-|. -|..+ ..+|..--.
T Consensus 193 p~g~~~n~gfEglait~d~~~L~~~le~~l~~d~~~~d~~~~~~lRil~~d~~~~~~~~~~ly~-~e~~~-~~~g~~~~l 270 (391)
T COG4222 193 PKGLRNNLGFEGLAITPDGKKLYALLEGALAQDGNKADPTGGSPLRILEYDLATKQWTLEYLYV-LELGG-DAIGDTTVL 270 (391)
T ss_pred ccccccccceeeEEecCCCceEEEEEeccccccccccCcccccceEEEEEecccCccceeEEEe-eccCc-cCCcccccc
Confidence 2348888864 899998863 236788999999888666554 23333 344444334
Q ss_pred ECCCceEEEEcCCC
Q 023864 206 SDGSSMLYQIDPQT 219 (276)
Q Consensus 206 SDGS~~L~viDp~t 219 (276)
.|+...+.-+|...
T Consensus 271 ~~~~~~~i~rd~~~ 284 (391)
T COG4222 271 NDGLFLVIERDNGG 284 (391)
T ss_pred cccceeEEEecCCC
Confidence 44444444444333
No 405
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A.
Probab=36.77 E-value=91 Score=24.81 Aligned_cols=63 Identities=17% Similarity=0.207 Sum_probs=41.5
Q ss_pred EEEEec-CCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEE
Q 023864 96 VNEFPH-DPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQ 164 (276)
Q Consensus 96 v~~~Ph-d~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~Lyq 164 (276)
=+.=|| ....-.+|+.-+.+|..++.+=+++. .||++||+.+..-...-..|.. -+.++++|+
T Consensus 40 ~n~Cph~~~~~Ls~G~i~~~~g~~~V~CPlH~~----~f~L~tG~~~~~~~~~l~~ypv--rv~~g~V~V 103 (104)
T PF13806_consen 40 DNRCPHSQAGPLSDGLIGDGNGEPCVACPLHKW----RFDLRTGECLEDPDVSLRTYPV--RVEDGQVYV 103 (104)
T ss_dssp ESBETTTTSSCGCGSEEEECTTEEEEEETTTTE----EEETTTTEESSECSEBSBEEEE--EECTTEEEE
T ss_pred eccCCccCCcccceeEEccCCCCEEEECCCCCC----eEECCCcCcCCCCCCcEEeEEE--EEECCEEEE
Confidence 344488 57778889988877888877776663 7899999875544444444533 233566654
No 406
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=36.52 E-value=4.2e+02 Score=25.98 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=29.7
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCC
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALE 136 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~ 136 (276)
+-+.+.+++.+. .-.-++.|..+..|..- ..+..+++||+.
T Consensus 69 sG~ll~~i~w~~-~~iv~~~wt~~e~LvvV---~~dG~v~vy~~~ 109 (410)
T PF04841_consen 69 SGKLLSSIPWDS-GRIVGMGWTDDEELVVV---QSDGTVRVYDLF 109 (410)
T ss_pred CCCEeEEEEECC-CCEEEEEECCCCeEEEE---EcCCEEEEEeCC
Confidence 346788888876 55689999877666542 256789999986
No 407
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=36.30 E-value=2.8e+02 Score=27.65 Aligned_cols=95 Identities=11% Similarity=0.045 Sum_probs=66.1
Q ss_pred EEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCC-ceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEe
Q 023864 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS-YFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFT 187 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~-~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~ 187 (276)
-+++.- +..|.-+++|.+-.|.+|++..-+-..++.-++. .-..--..+|.+|...+.-.-++.|+...|-+.. -++
T Consensus 53 yieW~a-ds~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~-~~~ 130 (447)
T KOG4497|consen 53 YIEWKA-DSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY-LLP 130 (447)
T ss_pred heeeec-cceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE-Eec
Confidence 456654 4555568899999999999998877777665543 2222223345678777778889999998887642 233
Q ss_pred cC--CCCeeEEeeCCCEEEE
Q 023864 188 HQ--MKDGWGLATDGKVLFG 205 (276)
Q Consensus 188 ~~--~~EGWGLT~Dg~~L~v 205 (276)
++ .-.|+.+++||+..-+
T Consensus 131 ~pK~~~kg~~f~~dg~f~ai 150 (447)
T KOG4497|consen 131 HPKTNVKGYAFHPDGQFCAI 150 (447)
T ss_pred ccccCceeEEECCCCceeee
Confidence 33 3489999999997644
No 408
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=36.11 E-value=6.8e+02 Score=28.28 Aligned_cols=117 Identities=15% Similarity=0.207 Sum_probs=68.8
Q ss_pred eEEEEEEecCCCCCceEEEEecC----CEEEEEcCCCCCCeEEEEeCCCC-cEEEEeecCC--CceEEEEEEe---CCEE
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAEN----DTLFESTGLYGRSSVRRVALETG-KVEAINQMEG--SYFGEGLTLL---GEKL 162 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~d----g~LyeStG~yg~S~I~~iDl~tg-kv~~~~~l~~--~~FgEGit~~---g~~L 162 (276)
..++++|+- -.+-..=+..+.| ++++.++|.|.+.++|++-..=| .-.+.++|+. ..|.---.++ ++.|
T Consensus 344 ~~ilet~~N-LgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~Gikg~w~lk~~v~~~~d~yl 422 (1096)
T KOG1897|consen 344 VVILETFVN-LGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPGIKGMWSLKSMVDENYDNYL 422 (1096)
T ss_pred hhhhhhccc-ccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCCccceeEeeccccccCCcEE
Confidence 345666653 3333222333333 57999999999999999876544 2345566763 3443221122 3466
Q ss_pred EEEEeeCCEEEEEeCCCCcEEEEEecCCCCeeEEeeCCCEEEEEC-CCceEEEEcCCC
Q 023864 163 FQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQT 219 (276)
Q Consensus 163 yqlTwk~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t 219 (276)
++---.+-+++.+..+ + ..-..+ |+..|-+.+++|+ +.++|..+-++.
T Consensus 423 vlsf~~eTrvl~i~~e-~---ee~~~~-----gf~~~~~Tif~S~i~g~~lvQvTs~~ 471 (1096)
T KOG1897|consen 423 VLSFISETRVLNISEE-V---EETEDP-----GFSTDEQTIFCSTINGNQLVQVTSNS 471 (1096)
T ss_pred EEEeccceEEEEEccc-e---EEeccc-----cccccCceEEEEccCCceEEEEeccc
Confidence 6655566666666544 1 222222 7888899999998 666666655543
No 409
>PRK10115 protease 2; Provisional
Probab=35.99 E-value=5.5e+02 Score=27.14 Aligned_cols=183 Identities=10% Similarity=0.071 Sum_probs=85.9
Q ss_pred cccCCCCCCCCceeeeEEEEEEecC--CCC--C-ceEEEEecCC-EEEEEcCCC---CCCeEEEEeCCCC--c--EEEEe
Q 023864 78 WIRFPGVDQSPSIYTIQVVNEFPHD--PRA--F-TQGLLYAEND-TLFESTGLY---GRSSVRRVALETG--K--VEAIN 144 (276)
Q Consensus 78 ~~~~~~~~~~~~~~t~~Vv~~~Phd--~~a--F-TQGL~~~~dg-~LyeStG~y---g~S~I~~iDl~tg--k--v~~~~ 144 (276)
+.++..-..+-..+++.|++--.-. +.. . ..++.+.+|+ .||.++-.- -...|.++++.|+ + ++..
T Consensus 140 ~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~- 218 (686)
T PRK10115 140 IMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYE- 218 (686)
T ss_pred EEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEe-
Confidence 3333333445555666666542111 111 0 1368998775 465544321 2368999999998 2 2222
Q ss_pred ecCCCceEEEEEE--eCCEEEEEEeeC---CEEEEEeCC--CCcEEEEEecCCCCeeEEeeCCCEEEE-EC-C--CceEE
Q 023864 145 QMEGSYFGEGLTL--LGEKLFQVTWLQ---KTGFIYDQN--NLNKLEEFTHQMKDGWGLATDGKVLFG-SD-G--SSMLY 213 (276)
Q Consensus 145 ~l~~~~FgEGit~--~g~~LyqlTwk~---~~v~V~D~~--tlk~i~~~~~~~~EGWGLT~Dg~~L~v-SD-G--S~~L~ 213 (276)
.-+...+ -++.. +++.+. +.-.+ +.+.++|.. +.+...-++.+.+.=+.+.+.++.||+ +| + .-+|.
T Consensus 219 e~~~~~~-~~~~~s~d~~~l~-i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~tn~~~~~~~l~ 296 (686)
T PRK10115 219 EKDDTFY-VSLHKTTSKHYVV-IHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYLRSNRHGKNFGLY 296 (686)
T ss_pred eCCCCEE-EEEEEcCCCCEEE-EEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEEEEcCCCCCceEE
Confidence 1222233 22222 344444 33333 467888842 222222223222233445555667766 66 3 33566
Q ss_pred EEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEE--eCCCCCeEEEEeCCCC
Q 023864 214 QIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWAN--VWQVWPCIPYAYLQAF 267 (276)
Q Consensus 214 viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyAN--vw~s~d~I~vIDp~T~ 267 (276)
.+|.++-..-+.+.-..++ ..+.++.+..++|++. --.. ..|.++|+.++
T Consensus 297 ~~~~~~~~~~~~l~~~~~~---~~i~~~~~~~~~l~~~~~~~g~-~~l~~~~~~~~ 348 (686)
T PRK10115 297 RTRVRDEQQWEELIPPREN---IMLEGFTLFTDWLVVEERQRGL-TSLRQINRKTR 348 (686)
T ss_pred EecCCCcccCeEEECCCCC---CEEEEEEEECCEEEEEEEeCCE-EEEEEEcCCCC
Confidence 6665531111111111112 2445666666765433 2233 57777787653
No 410
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=35.87 E-value=2e+02 Score=30.82 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=49.9
Q ss_pred eCCEEEEEEeeCCEEEEEeCCCCcEEEEEecC-----CCC---eeEEe----eCC------CEEEEECCCceEEEEcCCC
Q 023864 158 LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-----MKD---GWGLA----TDG------KVLFGSDGSSMLYQIDPQT 219 (276)
Q Consensus 158 ~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~-----~~E---GWGLT----~Dg------~~L~vSDGS~~L~viDp~t 219 (276)
.||.||++|= -+++|..|++|.+.+-++... .+. .=|++ ... +++|+---+.+|--+|.+|
T Consensus 213 vgdtlYvcTp-hn~v~ALDa~TGkekWkydp~~~~nv~~~~~tCrgVsy~~a~a~~k~pc~~rIflpt~DarlIALdA~t 291 (773)
T COG4993 213 VGDTLYVCTP-HNRVFALDAATGKEKWKYDPNLKSNVDPQHQTCRGVSYGAAKADAKSPCPRRIFLPTADARLIALDADT 291 (773)
T ss_pred ECCEEEEecC-cceeEEeeccCCceeeecCCCCCCCcccccccccceecccccccccCCCceeEEeecCCceEEEEeCCC
Confidence 4799999998 789999999999998887532 111 11221 111 3577755568999999999
Q ss_pred CcEEEEEEe
Q 023864 220 LKVIRKDIV 228 (276)
Q Consensus 220 ~~vi~~I~V 228 (276)
+|+.-+...
T Consensus 292 Gkvc~~Fa~ 300 (773)
T COG4993 292 GKVCWSFAN 300 (773)
T ss_pred CcEeheecc
Confidence 999866433
No 411
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=35.70 E-value=1.5e+02 Score=28.39 Aligned_cols=54 Identities=24% Similarity=0.211 Sum_probs=31.7
Q ss_pred CCceEEEEcCCC-CcEEEEEEeeeCCEeeeeeeeeEEE----CC---EEEEEeCCCCCeEEEEeCCC
Q 023864 208 GSSMLYQIDPQT-LKVIRKDIVRYKGREVRNLNELEFI----KG---EVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 208 GS~~L~viDp~t-~~vi~~I~V~~~g~pv~~lNELE~i----dG---~lyANvw~s~d~I~vIDp~T 266 (276)
+...|+++|.+| ++++++|.+..... .+...+.+ || ++||.- .. ..|.+||...
T Consensus 179 ~~~~lyi~d~~t~G~l~~~i~~~~~~~---gl~~~~~~D~d~DG~~D~vYaGD-l~-GnlwR~dl~~ 240 (335)
T PF05567_consen 179 GGAALYILDADTTGALIKKIDVPGGSG---GLSSPAVVDSDGDGYVDRVYAGD-LG-GNLWRFDLSS 240 (335)
T ss_dssp --EEEEEEETTT---EEEEEEE--STT----EEEEEEE-TTSSSEE-EEEEEE-TT-SEEEEEE--T
T ss_pred CCcEEEEEECCCCCceEEEEecCCCCc---cccccEEEeccCCCeEEEEEEEc-CC-CcEEEEECCC
Confidence 356899999999 99999999865211 12222333 34 599887 35 7899999864
No 412
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=35.63 E-value=3.6e+02 Score=30.61 Aligned_cols=122 Identities=14% Similarity=0.129 Sum_probs=76.0
Q ss_pred CCceeeeEEEEE-----EecCCCCCceE--EEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC-CceEEEEEE
Q 023864 87 SPSIYTIQVVNE-----FPHDPRAFTQG--LLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTL 157 (276)
Q Consensus 87 ~~~~~t~~Vv~~-----~Phd~~aFTQG--L~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~-~~FgEGit~ 157 (276)
..-.|+|++++. +-|+..- .| +++.+- |+++.+.| +.++.||+...+++++-.+-- ..+=..+..
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~--~~~v~Ai~~f~~~~LagvG----~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt 984 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEI--PGPVGAICPFQGRVLAGVG----RFLRLYDLGKKKLLRKCELKFIPNRISSIQT 984 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCC--CccceEEeccCCEEEEecc----cEEEEeeCChHHHHhhhhhccCceEEEEEee
Confidence 445788888864 3343221 22 244443 68887777 799999999988877765443 223446666
Q ss_pred eCCEEEEEEeeCCEEEE-EeCCCCcEEEEEecCCCCeeEEe---eCCCEEEEECCCceEEEE
Q 023864 158 LGEKLFQVTWLQKTGFI-YDQNNLNKLEEFTHQMKDGWGLA---TDGKVLFGSDGSSMLYQI 215 (276)
Q Consensus 158 ~g~~LyqlTwk~~~v~V-~D~~tlk~i~~~~~~~~EGWGLT---~Dg~~L~vSDGS~~L~vi 215 (276)
...|+++-+-++..-|+ |+++.-+.+--..-+. .=|-.+ -|-..+.++|--..++++
T Consensus 985 ~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~-pR~Vt~~~~lD~~tvagaDrfGNi~~v 1045 (1205)
T KOG1898|consen 985 YGARIVVGDIQESVHFVRYRREDNQLIVFADDPV-PRHVTALELLDYDTVAGADRFGNIAVV 1045 (1205)
T ss_pred cceEEEEeeccceEEEEEEecCCCeEEEEeCCCc-cceeeEEEEecCCceeeccccCcEEEE
Confidence 78999999999998877 6766655544332111 122211 266788888854445444
No 413
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=34.78 E-value=4e+02 Score=26.35 Aligned_cols=138 Identities=16% Similarity=0.156 Sum_probs=77.1
Q ss_pred EeCCCCcEEEEeecCC--CceEEEEEEe-CCEEEEEEeeCCEEEEEeCCCCcE----EEEEecC--CCCeeEEeeCCCEE
Q 023864 133 VALETGKVEAINQMEG--SYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNK----LEEFTHQ--MKDGWGLATDGKVL 203 (276)
Q Consensus 133 iDl~tgkv~~~~~l~~--~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~tlk~----i~~~~~~--~~EGWGLT~Dg~~L 203 (276)
+++...++.+..+++- +.=--.+++. .+.--.+--.+.-.|.+-.+|... .+.|... .-.-|-++|+|+.-
T Consensus 175 l~L~~a~Vt~V~~vGmGdRVCVDtcsll~~gEGmLVGs~s~glfLVhsEt~~~pYva~RPFRVNAGaVHaYv~~pg~kT~ 254 (354)
T PF01959_consen 175 LELVPATVTRVEPVGMGDRVCVDTCSLLRPGEGMLVGSSSSGLFLVHSETHESPYVASRPFRVNAGAVHAYVLMPGGKTR 254 (354)
T ss_pred ceeEEEEEEEEEEcCCccEEEEEccccCCCCCeEEEcccCceEEEEEeccccCCCCCCCCceEecCcceeEEEcCCCcee
Confidence 5666666655555542 2111111111 233334444555566666665543 2233332 33566789999999
Q ss_pred EEEC--CCceEEEEcCCCCc---EEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCC----------eEEEEeCCCCc
Q 023864 204 FGSD--GSSMLYQIDPQTLK---VIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWP----------CIPYAYLQAFG 268 (276)
Q Consensus 204 ~vSD--GS~~L~viDp~t~~---vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d----------~I~vIDp~T~~ 268 (276)
|.|+ ..+.|.++|.+--. .++++++. .+|.- +=|.|+ +|+..--+-|... .|.|.|.+-|.
T Consensus 255 YLSEL~sG~~VlvVd~~G~tR~~~VGRvKIE--~RPLl-lIeA~~-~g~~~svilQnaetIRlv~p~G~~vsVt~Lk~GD 330 (354)
T PF01959_consen 255 YLSELRSGDEVLVVDADGRTRTAIVGRVKIE--RRPLL-LIEAEA-DGKRISVILQNAETIRLVGPDGEPVSVTELKPGD 330 (354)
T ss_pred ehhhhcCCCEEEEEeCCCCEEEEEeeEEEEe--ecceE-EEEEEe-CCeEEEEEEecCcEEEEECCCCCEeeeeecCCCC
Confidence 9999 58899999976432 23444444 47764 446777 6654433333312 36677777777
Q ss_pred EEEEEE
Q 023864 269 SSLVYV 274 (276)
Q Consensus 269 v~l~~~ 274 (276)
.+|+|+
T Consensus 331 ~vL~~~ 336 (354)
T PF01959_consen 331 EVLVYL 336 (354)
T ss_pred EEEEEe
Confidence 788776
No 414
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=34.78 E-value=43 Score=39.69 Aligned_cols=90 Identities=21% Similarity=0.228 Sum_probs=62.3
Q ss_pred EecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCC
Q 023864 99 FPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQN 178 (276)
Q Consensus 99 ~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~ 178 (276)
--||..+= -|+|.|.-+|+.|+| .+..|-.||....+++++.+- ++-...|+.---++.+-|++..
T Consensus 2333 ~~H~~gaT--~l~~~P~~qllisgg--r~G~v~l~D~rqrql~h~~~~----------~~~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2333 TCHDGGAT--VLAYAPKHQLLISGG--RKGEVCLFDIRQRQLRHTFQA----------LDTREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred eecCCCce--EEEEcCcceEEEecC--CcCcEEEeehHHHHHHHHhhh----------hhhhheeeccCcccceEEEEcc
Confidence 44665554 678888878999999 667788999999887665432 2234555555667888888888
Q ss_pred CCcEEEEEecC-CCCeeEEeeCCCEE
Q 023864 179 NLNKLEEFTHQ-MKDGWGLATDGKVL 203 (276)
Q Consensus 179 tlk~i~~~~~~-~~EGWGLT~Dg~~L 203 (276)
.+..+.+|+.+ ...|. +-..|..+
T Consensus 2399 ~~~ll~~~p~e~ak~gf-Fr~~g~Q~ 2423 (2439)
T KOG1064|consen 2399 EFGLLHTFPSEHAKQGF-FRNIGMQI 2423 (2439)
T ss_pred ccchhhcCchhhcccch-hhhcCcee
Confidence 99999999865 34444 44444333
No 415
>PF09259 Fve: Fungal immunomodulatory protein Fve; InterPro: IPR015339 This entry represents the FIP-Fve (Fungal Immunomodulatory Protein Fve) is a major fruiting body protein from Flammulina velutipes, a mushroom possessing immunomodulatory activity. It stimulates lymphocyte mitogenesis, suppresses systemic anaphylaxis reactions and oedema, enhances transcription of IL-2, IFN-gamma and TNF-alpha, and haemagglutinates red blood cells. It appears to be a lectin with specificity for complex cell-surface carbohydrates. Fve adopts a tertiary structure consisting of an immunoglobulin-like beta-sandwich, with seven strands arranged in two beta sheets, in a Greek-key topology. It forms a non-covalently linked homodimer containing no Cys, His or Met residues; dimerisation occurs by 3-D domain swapping of the N-terminal helices and is stabilised predominantly by hydrophobic interactions []. ; GO: 0030246 carbohydrate binding, 0002682 regulation of immune system process; PDB: 3KCW_A 1OSY_B 3F3H_B.
Probab=33.89 E-value=14 Score=29.90 Aligned_cols=43 Identities=19% Similarity=0.077 Sum_probs=23.5
Q ss_pred EEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCCeEEEEeCCCCc
Q 023864 222 VIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 222 vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d~I~vIDp~T~~ 268 (276)
+...-.|..+|.. .+|=|||..|+=.|-- ++ =.|.||||.||.
T Consensus 60 Vr~syaV~sdGsQ--kiNFLeYn~GyGiADT-~T-IQV~VvdPdtgn 102 (111)
T PF09259_consen 60 VRPSYAVESDGSQ--KINFLEYNSGYGIADT-NT-IQVFVVDPDTGN 102 (111)
T ss_dssp EE--S-B-TTS-E--EEEGGGTTTT--EETT-S--EEEEEE-TTTTT
T ss_pred cccceeecCCCCc--eEeEEEecCCcccccC-ce-EEEEEEcCCCCC
Confidence 3344556666654 6778889999854433 33 357899999987
No 416
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=33.42 E-value=1.6e+02 Score=32.37 Aligned_cols=73 Identities=12% Similarity=0.113 Sum_probs=48.2
Q ss_pred EEEEEe--CCEEEEEEeeCCEEEEE----e--CCCCcEEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEE
Q 023864 153 EGLTLL--GEKLFQVTWLQKTGFIY----D--QNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIR 224 (276)
Q Consensus 153 EGit~~--g~~LyqlTwk~~~v~V~----D--~~tlk~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~ 224 (276)
.++... .+.|+.++ .+|.+.++ | ....+..+.++.+ -.+-.-+||++.|.+..|.++|.+++ .+|.++.
T Consensus 79 vs~~yl~d~~~l~~~~-~~Gdi~~~~~~~~~~~~~~E~VG~vd~G-I~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~ 155 (928)
T PF04762_consen 79 VSFQYLADSESLCIAL-ASGDIILVREDPDPDEDEIEIVGSVDSG-ILAASWSPDEELLALVTGEGNLLLMT-RDFDPIS 155 (928)
T ss_pred EEEEeccCCCcEEEEE-CCceEEEEEccCCCCCceeEEEEEEcCc-EEEEEECCCcCEEEEEeCCCEEEEEe-ccceEEE
Confidence 344443 24555555 45556666 4 3455677888765 25556789999999999999998885 5566655
Q ss_pred EEEe
Q 023864 225 KDIV 228 (276)
Q Consensus 225 ~I~V 228 (276)
++..
T Consensus 156 E~~l 159 (928)
T PF04762_consen 156 EVPL 159 (928)
T ss_pred Eeec
Confidence 5444
No 417
>KOG2103 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.00 E-value=2.2e+02 Score=31.27 Aligned_cols=65 Identities=9% Similarity=-0.157 Sum_probs=43.0
Q ss_pred CCEEEEEEeeCCEEEEEeCCCCcEEEEEecC---CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEee
Q 023864 159 GEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ---MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVR 229 (276)
Q Consensus 159 g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~---~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~ 229 (276)
+++|++.|.+ +.+--.|.+|.+++-+--.+ .+.|-+++. ++|.+...++.+|.+++....++...
T Consensus 47 ~~rlivsT~~-~vlAsL~~~tGei~WRqvl~~~~~~~~~~~~~-----~iS~dg~~lr~wn~~~g~l~~~i~l~ 114 (910)
T KOG2103|consen 47 SKRLIVSTEK-GVLASLNLRTGEIIWRQVLEPKTSGLGVPLTN-----TISVDGRYLRSWNTNNGILDWEIELA 114 (910)
T ss_pred CceEEEEecc-chhheecccCCcEEEEEeccCCCcccCcceeE-----EEccCCcEEEeecCCCceeeeecccc
Confidence 4789988865 55666788999988664332 223555665 57777777777777777665555543
No 418
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=32.99 E-value=5.4e+02 Score=26.15 Aligned_cols=56 Identities=14% Similarity=-0.040 Sum_probs=34.4
Q ss_pred CceEEEEcCCCCcEEEEEEeeeCCEeee----eeeeeEEECCEEEEEeCCC---CCeEEEEeCCCCcE
Q 023864 209 SSMLYQIDPQTLKVIRKDIVRYKGREVR----NLNELEFIKGEVWANVWQV---WPCIPYAYLQAFGS 269 (276)
Q Consensus 209 S~~L~viDp~t~~vi~~I~V~~~g~pv~----~lNELE~idG~lyANvw~s---~d~I~vIDp~T~~v 269 (276)
..++.++|..+.+++..- |.|.. .-|..-+.||++|+.|=.. ...|.+|||+|+..
T Consensus 366 ~~~laI~d~~~kt~t~V~-----glP~~~is~~~~~~~ve~G~aYi~Vtt~~g~~~~IY~iDp~TatA 428 (435)
T PF14298_consen 366 AKKLAIFDVSNKTFTWVT-----GLPADLISGFGNAPYVENGKAYIPVTTEDGSDPYIYKIDPATATA 428 (435)
T ss_pred cceEEEEEccCceeEEec-----cCChhhccccccceEeeCCEEEEEEeecCCCceeEEEEcCccccc
Confidence 457888888876654321 22222 1123335689999777533 14699999999654
No 419
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.94 E-value=57 Score=34.39 Aligned_cols=101 Identities=15% Similarity=0.083 Sum_probs=63.3
Q ss_pred CCEEEEEeCCCCcEEEEEecCCCCeeE-----Eee-CCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeee
Q 023864 169 QKTGFIYDQNNLNKLEEFTHQMKDGWG-----LAT-DGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNEL 241 (276)
Q Consensus 169 ~~~v~V~D~~tlk~i~~~~~~~~EGWG-----LT~-Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNEL 241 (276)
++-+.+||+=-.+++.++.-..+||-| |-+ |...|+.-. ..++|-.+|....+-+-.+.|.....|-.-.--+
T Consensus 803 D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 567788998777777765432246655 222 333444432 4779999999999999999997543332222223
Q ss_pred EEEC-CEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 242 EFIK-GEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 242 E~id-G~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
...+ |.-.|.--.+ .+|+..|..+|+|+
T Consensus 883 aVa~~GN~lAa~LSn-Gci~~LDaR~G~vI 911 (1034)
T KOG4190|consen 883 AVADKGNKLAAALSN-GCIAILDARNGKVI 911 (1034)
T ss_pred EeccCcchhhHHhcC-CcEEEEecCCCcee
Confidence 3433 3322333345 89999999998876
No 420
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=31.70 E-value=5.1e+02 Score=25.44 Aligned_cols=102 Identities=12% Similarity=0.180 Sum_probs=56.0
Q ss_pred CCceEEEEecCCE---EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCc
Q 023864 105 AFTQGLLYAENDT---LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLN 181 (276)
Q Consensus 105 aFTQGL~~~~dg~---LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk 181 (276)
.| ..+.++|+|+ ||..+ ..+.++..+-.+...+..++..-=+.-+++-|+.--++.| ++.+.++.+..-.
T Consensus 218 ~i-~~iavSpng~~iAl~t~~-----g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~-~~~l~lvg~~~~~ 290 (410)
T PF04841_consen 218 PI-IKIAVSPNGKFIALFTDS-----GNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW-EDELLLVGPDGDS 290 (410)
T ss_pred Ce-EEEEECCCCCEEEEEECC-----CCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe-CCEEEEECCCCCc
Confidence 45 7888888875 34322 3466665555556666666632223477888887778888 5666666643322
Q ss_pred EEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEE
Q 023864 182 KLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKD 226 (276)
Q Consensus 182 ~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I 226 (276)
. +| ..|+...++++ -|-|.++-....+.+++|
T Consensus 291 ~--~~----------~~~~~~~l~~E-~DG~riit~~~~~~l~~V 322 (410)
T PF04841_consen 291 I--SF----------WYDGPVILVSE-IDGVRIITSTSHEFLQRV 322 (410)
T ss_pred e--EE----------eccCceEEecc-CCceEEEeCCceEEEEEC
Confidence 2 22 33333333333 233555555555555554
No 421
>KOG2103 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.07 E-value=5.3e+02 Score=28.47 Aligned_cols=73 Identities=21% Similarity=0.161 Sum_probs=50.8
Q ss_pred EEEec-CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEec
Q 023864 110 LLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTH 188 (276)
Q Consensus 110 L~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~ 188 (276)
+.++. ..+|+++|- ++-|...++.||++.=++-+.+..=+.|+.+.+ | ++..+..+.++|.+....-.+++.
T Consensus 41 ~~~~t~~~rlivsT~---~~vlAsL~~~tGei~WRqvl~~~~~~~~~~~~~---~-iS~dg~~lr~wn~~~g~l~~~i~l 113 (910)
T KOG2103|consen 41 LVYDTKSKRLIVSTE---KGVLASLNLRTGEIIWRQVLEPKTSGLGVPLTN---T-ISVDGRYLRSWNTNNGILDWEIEL 113 (910)
T ss_pred EeecCCCceEEEEec---cchhheecccCCcEEEEEeccCCCcccCcceeE---E-EccCCcEEEeecCCCceeeeeccc
Confidence 44443 368999864 688999999999998888777553333444433 4 677777788888877766666664
Q ss_pred C
Q 023864 189 Q 189 (276)
Q Consensus 189 ~ 189 (276)
.
T Consensus 114 ~ 114 (910)
T KOG2103|consen 114 A 114 (910)
T ss_pred c
Confidence 4
No 422
>PF04351 PilP: Pilus assembly protein, PilP; InterPro: IPR007446 The PilP family are periplasmic proteins involved in the biogenesis of type IV pili [].; PDB: 2Y4Y_B 2Y4X_A 2IVW_A 2LC4_A.
Probab=30.85 E-value=2.3e+02 Score=23.92 Aligned_cols=52 Identities=19% Similarity=0.360 Sum_probs=33.5
Q ss_pred EEeCCCCcEEEEEecCCCCeeEE--eeCCCEEEEECC----C--ceEEEEcCCCCcEEEEE
Q 023864 174 IYDQNNLNKLEEFTHQMKDGWGL--ATDGKVLFGSDG----S--SMLYQIDPQTLKVIRKD 226 (276)
Q Consensus 174 V~D~~tlk~i~~~~~~~~EGWGL--T~Dg~~L~vSDG----S--~~L~viDp~t~~vi~~I 226 (276)
-|+.+.|+.++.+..+ .+-||| ++||+...|.=| . .+|.-|+...-.++..+
T Consensus 73 ~~~Ld~LklvG~l~~~-~~~~ALv~~pdg~v~~V~~G~yiG~n~G~I~~Is~~~I~l~E~v 132 (149)
T PF04351_consen 73 RYPLDQLKLVGTLSQG-GQPWALVQDPDGKVYRVKVGDYIGQNYGRITSISEDSIELVEIV 132 (149)
T ss_dssp GS-CCCEEEEEEEEET-TEEEEEEEE-TTEEEEEETTEEETTTTEEEEEEETTEEEEEEEE
T ss_pred cCchhHeEEEEEEeeC-CEEEEEEEeCCCCEEEecCCCEeccCCCEEEEEeCCeEEEEEEc
Confidence 4788899999999876 688996 567776666544 3 37777776544443333
No 423
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=30.76 E-value=84 Score=31.04 Aligned_cols=77 Identities=19% Similarity=0.268 Sum_probs=35.9
Q ss_pred hhhHHHHHHHhhhhhhccccccccCCCCCCCCceeeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCC
Q 023864 57 AVMLIFFFLCGFVLLCISSNMWIRFPGVDQSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALE 136 (276)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~ 136 (276)
..+++|++++++++..+ -.|.....+. ....+|++.-+|+. ..||... +..-| .| +.-.+|..+.++
T Consensus 86 g~VGlfvL~gi~ll~~~--~~~L~g~~~~--~~~~~Y~~~a~F~~-----a~GL~~G-s~Vr~--~G-V~VG~V~~I~l~ 152 (370)
T PLN03094 86 GGVGLFLLSGAALLALT--LAWLRGFQLR--SKFRKYQAVFEFPQ-----ACGICVG-TPVRI--RG-VTVGNVVRVRPS 152 (370)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHcCCccc--CCCceEEEEEecCC-----CCCCCCC-CceEE--cC-EEeeEEEEEEec
Confidence 46778887776655332 2233311111 11236777777664 2355432 12222 22 233355555565
Q ss_pred CCcEEEEeec
Q 023864 137 TGKVEAINQM 146 (276)
Q Consensus 137 tgkv~~~~~l 146 (276)
..++...+.+
T Consensus 153 ~~~V~V~~~I 162 (370)
T PLN03094 153 LEKIDVVVEV 162 (370)
T ss_pred CCeEEEEEEE
Confidence 5555444444
No 424
>PF03736 EPTP: EPTP domain; InterPro: IPR005492 Mutations in the LGI/EPT gene can result in a special form of epilepsy, autosomal dominant lateral temporal epilepsy. The Epitempin protein (also known as Leucine-rich glioma-inactivated protein) was seen to contain a 130 amino acid repeat in its C-terminal section, although a sub-domain of 50 amino acids has now been further defined within this. The architecture and structural features of this repeat make it a likely member 7-bladed beta-propeller fold []. This protein has now been found in a number of proteins associated with neurological disorders suggesting that it may play a role in the development of epilepsy and other related conditions [].
Probab=30.51 E-value=90 Score=20.85 Aligned_cols=40 Identities=15% Similarity=0.269 Sum_probs=24.2
Q ss_pred eEEEEEEe-cCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEe
Q 023864 93 IQVVNEFP-HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVA 134 (276)
Q Consensus 93 ~~Vv~~~P-hd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iD 134 (276)
+...+++| +++.++ +=+.+.++-.|.. +..+|.+.|.+||
T Consensus 3 F~~~Q~i~~~~~~~~-e~F~i~~~~fl~~-a~~~~~s~Iy~Wd 43 (44)
T PF03736_consen 3 FVPFQTIPTRGARDV-EPFSIGGDQFLAV-ASFFGDSQIYRWD 43 (44)
T ss_pred cccEEEeCccceeEE-EEEEECCEEEEEE-EeCCCCCEEEEeC
Confidence 34567777 556666 6666653222333 3446788888886
No 425
>TIGR00547 lolA periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself.
Probab=30.48 E-value=87 Score=27.99 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=15.0
Q ss_pred CCEEEEECCCceEEEEcCCCCcEE
Q 023864 200 GKVLFGSDGSSMLYQIDPQTLKVI 223 (276)
Q Consensus 200 g~~L~vSDGS~~L~viDp~t~~vi 223 (276)
.+.++|||| .+|+++||+.-+++
T Consensus 77 ~~q~iVsdG-~~vw~Ydp~leQvt 99 (204)
T TIGR00547 77 DESIIISDG-KTLWFYDPFVEQAT 99 (204)
T ss_pred CceEEEECC-CEEEEECCCCceee
Confidence 356677775 46777777766553
No 426
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=30.24 E-value=3.6e+02 Score=29.02 Aligned_cols=91 Identities=13% Similarity=0.169 Sum_probs=59.2
Q ss_pred EEEEecC-CCCCceEEEEecC-CEEEEEcCC-----C----------CCCeEEEEeCCCCcEEEE---e-------ecCC
Q 023864 96 VNEFPHD-PRAFTQGLLYAEN-DTLFESTGL-----Y----------GRSSVRRVALETGKVEAI---N-------QMEG 148 (276)
Q Consensus 96 v~~~Phd-~~aFTQGL~~~~d-g~LyeStG~-----y----------g~S~I~~iDl~tgkv~~~---~-------~l~~ 148 (276)
.++|.|+ ++.| +=..|+++ +.+|...|. + -.|+|.-+|+.||++.=. + .++.
T Consensus 378 g~tyt~nspn~W-~~~SyD~~lnlVy~p~Gn~~pd~wg~trtp~dekysssivAlD~~TG~~kW~yQtvhhDlWDmDvp~ 456 (773)
T COG4993 378 GQTYTRNSPNSW-ASASYDAKLNLVYVPMGNQTPDTWGGTRTPGDEKYSSSIVALDATTGKLKWVYQTVHHDLWDMDVPA 456 (773)
T ss_pred CceeecCCCCcc-cccccCCCCCeEEEeCCCCChhhccCCCCcccccccceeEEecCCCcceeeeeeccCcchhcccCCC
Confidence 3555554 4555 55667765 678888885 1 247888999999986322 1 3455
Q ss_pred CceEEEEEEeCCEE--EEEEeeCCEEEEEeCCCCcEEEEEe
Q 023864 149 SYFGEGLTLLGEKL--FQVTWLQKTGFIYDQNNLNKLEEFT 187 (276)
Q Consensus 149 ~~FgEGit~~g~~L--yqlTwk~~~v~V~D~~tlk~i~~~~ 187 (276)
.+-=.-++.+|... -+---|++.+||.|+.|.+++-.++
T Consensus 457 qp~L~D~~~DG~~vpalv~ptk~G~~YVlDRrtGe~lv~~~ 497 (773)
T COG4993 457 QPTLLDITKDGKVVPALVHPTKNGFIYVLDRRTGELLVPIP 497 (773)
T ss_pred CceEEEeecCCcEeeeeecccccCcEEEEEcCCCccccccc
Confidence 55555677755422 2333478889999999998876554
No 427
>PF10703 MoaF: Molybdenum cofactor biosynthesis protein F; InterPro: IPR024724 Molybdenum cofactor biosynthesis protein F (MoaF) is essential for the production of the monoamine-inducible 30kDa protein in Klebsiella []. It is necessary for reconstituting organoautotrophic growth in Ralstonia eutropha []. MoaF is conserved in proteobacteria and some lower eukaryotes. The operon regulating the Moa genes is responsible for molybdenum cofactor biosynthesis.
Probab=29.77 E-value=45 Score=31.51 Aligned_cols=28 Identities=18% Similarity=0.431 Sum_probs=22.9
Q ss_pred CCEEEEEEeeCCEE-----EEEeCCCCcEEEEE
Q 023864 159 GEKLFQVTWLQKTG-----FIYDQNNLNKLEEF 186 (276)
Q Consensus 159 g~~LyqlTwk~~~v-----~V~D~~tlk~i~~~ 186 (276)
.+.||+++|.|..+ ++||.+.++-.++|
T Consensus 205 ~d~lYlf~WrEkiiPv~~vvliDL~~mRs~Gk~ 237 (265)
T PF10703_consen 205 ADNLYLFTWREKIIPVLGVVLIDLEQMRSTGKI 237 (265)
T ss_pred cCCEEEEEEEecccceeEEEEEEhhhCcccceE
Confidence 58999999999887 88998877765554
No 428
>PF11879 DUF3399: Domain of unknown function (DUF3399); InterPro: IPR024587 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The Shal potassium channel was found in Drosophila melanogaster (Fruit fly). Several vertebrate potassium channels with similar amino acid sequences were subsequently found and, together with the D. melanogaster Shal channel, now constitute the Kv4 family. These channels are the primary subunits contributing to transient, voltage-dependent potassium currents in the nervous system (A currents) and the heart (transient outward current), and are inhibited by free fatty acids []. This family can be further divided into 3 subfamilies, designated Kv4.1(KCND1), Kv4.2(KCND2) and Kv4.3(KCND3). This uncharacterised C-terminal domain is associated with the Shal (Kv4) potassium channel.
Probab=29.64 E-value=45 Score=27.36 Aligned_cols=30 Identities=33% Similarity=0.318 Sum_probs=20.0
Q ss_pred CCCCCCCCCCCCCccccccccccceeeecc
Q 023864 24 SPSPSPSSSSSSSSSCMASNHFSRFRHYNK 53 (276)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (276)
|+|||-||..+..++|-...+.+.++--++
T Consensus 71 SrS~SlSS~~g~~~sCC~RR~kr~~~l~ns 100 (104)
T PF11879_consen 71 SRSPSLSSQQGLTTSCCSRRAKRNTRLPNS 100 (104)
T ss_pred CCCcccccCCCCCcccCCCcccccCCCCCC
Confidence 566666666667788888777776663333
No 429
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=29.30 E-value=2.9e+02 Score=29.19 Aligned_cols=65 Identities=15% Similarity=0.063 Sum_probs=42.2
Q ss_pred CCEEEEECC--CceEEEEcCCCCcEEEEEEeeeCC----EeeeeeeeeEEECCEEEEEeCCCCCeEEEEeCCCCc
Q 023864 200 GKVLFGSDG--SSMLYQIDPQTLKVIRKDIVRYKG----REVRNLNELEFIKGEVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 200 g~~L~vSDG--S~~L~viDp~t~~vi~~I~V~~~g----~pv~~lNELE~idG~lyANvw~s~d~I~vIDp~T~~ 268 (276)
...|+..|| -++||.+|-+-++++.++.++++- .|......|. ..+.|. . .+++.|.+|||.-.+
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt-~eqtlv-G--lS~~svFrIDPR~~g 548 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMT-DEQTLV-G--LSDYSVFRIDPRARG 548 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcC-ccceEE-e--ecccceEEecccccC
Confidence 456777776 789999999999999999998754 1111111111 123332 2 233789999998755
No 430
>PRK13861 type IV secretion system protein VirB9; Provisional
Probab=29.19 E-value=2.1e+02 Score=27.20 Aligned_cols=50 Identities=12% Similarity=0.080 Sum_probs=35.5
Q ss_pred CCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEE
Q 023864 124 LYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFI 174 (276)
Q Consensus 124 ~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V 174 (276)
.|..+.|..+...-|.+ -.+.++++--=+.+++=+..-|+++-+++.+|+
T Consensus 38 ~Y~p~~V~~V~~~~G~~-T~I~f~~gE~I~~va~GDt~sW~v~~~~N~lfI 87 (292)
T PRK13861 38 AYNPDQVVRLSTAVGAT-LVVTFGANETVTAVAVSNSKDLAALPRGNYLFF 87 (292)
T ss_pred EeCCCCEEEEEEECCcE-EEEEECCCCEEEEeccccccceEEecCCcEEEE
Confidence 57889999998888865 345666543335555445567999988998887
No 431
>PF14312 FG-GAP_2: FG-GAP repeat
Probab=29.06 E-value=1e+02 Score=21.24 Aligned_cols=26 Identities=23% Similarity=0.352 Sum_probs=19.5
Q ss_pred ecCCCceEEEEEEeCCEEEEEEeeCC
Q 023864 145 QMEGSYFGEGLTLLGEKLFQVTWLQK 170 (276)
Q Consensus 145 ~l~~~~FgEGit~~g~~LyqlTwk~~ 170 (276)
.-....||-.+++.++.+.+=...++
T Consensus 12 ~~~~d~FG~sVai~gd~~vVGA~~~~ 37 (49)
T PF14312_consen 12 GAAGDYFGWSVAISGDTLVVGAPGDD 37 (49)
T ss_pred CCccCcceeEEEEeCCEEEEeeeccC
Confidence 34567899999999998777655443
No 432
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.90 E-value=8e+02 Score=26.52 Aligned_cols=149 Identities=13% Similarity=0.041 Sum_probs=86.3
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeC
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQ 169 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~ 169 (276)
|++-|.+|-. ...|..-++++|..-.+.++- .+-.|..||.+.+=...++.-+..-|---+++. +..-|+---.+
T Consensus 86 t~ekV~~FeA-H~DyIR~iavHPt~P~vLtsS--DDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLD 162 (794)
T KOG0276|consen 86 TGEKVKTFEA-HSDYIRSIAVHPTLPYVLTSS--DDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLD 162 (794)
T ss_pred cceeeEEeec-cccceeeeeecCCCCeEEecC--CccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecc
Confidence 4566666643 467889999999643444433 667789999987643334444445565666664 34566666678
Q ss_pred CEEEEEeCCCCcEEEEEecCCCCeeE-Ee--eCC-C-EEEEECCCceEEEEcCCCCcEEEEEEeee-CCEeeeeeeeeEE
Q 023864 170 KTGFIYDQNNLNKLEEFTHQMKDGWG-LA--TDG-K-VLFGSDGSSMLYQIDPQTLKVIRKDIVRY-KGREVRNLNELEF 243 (276)
Q Consensus 170 ~~v~V~D~~tlk~i~~~~~~~~EGWG-LT--~Dg-~-~L~vSDGS~~L~viDp~t~~vi~~I~V~~-~g~pv~~lNELE~ 243 (276)
+++-|+...+-....++.- ..-|.. ++ +-| | +|+-.--+..|-++|=+|-+-++++.=.. +=..+-..+||-+
T Consensus 163 rTVKVWslgs~~~nfTl~g-HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpi 241 (794)
T KOG0276|consen 163 RTVKVWSLGSPHPNFTLEG-HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPI 241 (794)
T ss_pred ccEEEEEcCCCCCceeeec-cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcE
Confidence 8888888776666666641 123333 22 122 2 33332225577888887765554444221 1223445556655
Q ss_pred E
Q 023864 244 I 244 (276)
Q Consensus 244 i 244 (276)
+
T Consensus 242 i 242 (794)
T KOG0276|consen 242 I 242 (794)
T ss_pred E
Confidence 4
No 433
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=27.79 E-value=3.3e+02 Score=30.42 Aligned_cols=114 Identities=17% Similarity=0.195 Sum_probs=62.6
Q ss_pred EEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC--CCceEEEEEEeCCEEEEEEeeC-CEEEE
Q 023864 98 EFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME--GSYFGEGLTLLGEKLFQVTWLQ-KTGFI 174 (276)
Q Consensus 98 ~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~--~~~FgEGit~~g~~LyqlTwk~-~~v~V 174 (276)
..=|+...| -+.++.||+...|.- .+-++|.|+++++++..-+-++ .++| -+.++.+ +..||.+ -+..+
T Consensus 171 l~GHeG~iF--~i~~s~dg~~i~s~S--dDRsiRlW~i~s~~~~~~~~fgHsaRvw--~~~~~~n--~i~t~gedctcrv 242 (967)
T KOG0974|consen 171 LKGHEGSIF--SIVTSLDGRYIASVS--DDRSIRLWPIDSREVLGCTGFGHSARVW--ACCFLPN--RIITVGEDCTCRV 242 (967)
T ss_pred ecccCCceE--EEEEccCCcEEEEEe--cCcceeeeecccccccCcccccccceeE--EEEeccc--eeEEeccceEEEE
Confidence 334666666 677777788776666 7889999999999875533222 2333 2333334 5555544 45566
Q ss_pred EeCCCCcEEEEEecC-CCCeeEE-eeCCCEEEEECC-CceEEEEcCCCC
Q 023864 175 YDQNNLNKLEEFTHQ-MKDGWGL-ATDGKVLFGSDG-SSMLYQIDPQTL 220 (276)
Q Consensus 175 ~D~~tlk~i~~~~~~-~~EGWGL-T~Dg~~L~vSDG-S~~L~viDp~t~ 220 (276)
++-+- +++..|.-- .+-=|++ -+++..+.++-| +..|..+|..+.
T Consensus 243 W~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 243 WGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred Eeccc-ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 64332 222233311 1223443 345666666655 445555554443
No 434
>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED
Probab=27.76 E-value=2e+02 Score=30.13 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=14.0
Q ss_pred CCceEEEEcCCCCcEEEEEEe
Q 023864 208 GSSMLYQIDPQTLKVIRKDIV 228 (276)
Q Consensus 208 GS~~L~viDp~t~~vi~~I~V 228 (276)
+.+.|.++|+.+++.+.++..
T Consensus 548 ~~SeL~IlDA~~l~~VArv~L 568 (590)
T PLN02258 548 GKSELQVVNAVNLELEATVKL 568 (590)
T ss_pred CceEEEEEeCCCCcccEEEEC
Confidence 666666777777766666655
No 435
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=27.26 E-value=6.3e+02 Score=27.97 Aligned_cols=91 Identities=13% Similarity=0.234 Sum_probs=56.4
Q ss_pred eEEEEEEec----CCCCCceEEEEecC-CEEEEEcCCCCCCeEEEE----eCCCCcEEEEeecCCCceEEEEEEeCCEEE
Q 023864 93 IQVVNEFPH----DPRAFTQGLLYAEN-DTLFESTGLYGRSSVRRV----ALETGKVEAINQMEGSYFGEGLTLLGEKLF 163 (276)
Q Consensus 93 ~~Vv~~~Ph----d~~aFTQGL~~~~d-g~LyeStG~yg~S~I~~i----Dl~tgkv~~~~~l~~~~FgEGit~~g~~Ly 163 (276)
.+++.+++. ++....-||.|-.| ..|+..+ ....|..+ |.++.++.-.-.++.+.-+..-..+++.|.
T Consensus 60 ~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~---~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella 136 (928)
T PF04762_consen 60 VEVLASWDAPLPDDPNDKIVSFQYLADSESLCIAL---ASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLA 136 (928)
T ss_pred eeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEE---CCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEE
Confidence 356666543 35677789998877 4565432 22456666 677776665556666655444444444555
Q ss_pred EEEeeCCEEEEEeCCCCcEEEEEec
Q 023864 164 QVTWLQKTGFIYDQNNLNKLEEFTH 188 (276)
Q Consensus 164 qlTwk~~~v~V~D~~tlk~i~~~~~ 188 (276)
++| .++++.+.+ .++.++.+.+.
T Consensus 137 ~vT-~~~~l~~mt-~~fd~i~E~~l 159 (928)
T PF04762_consen 137 LVT-GEGNLLLMT-RDFDPISEVPL 159 (928)
T ss_pred EEe-CCCEEEEEe-ccceEEEEeec
Confidence 555 567777775 78888888763
No 436
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=27.19 E-value=1.9e+02 Score=19.17 Aligned_cols=29 Identities=14% Similarity=0.141 Sum_probs=20.4
Q ss_pred cCCEEEEEcCC---C---CCCeEEEEeCCCCcEEE
Q 023864 114 ENDTLFESTGL---Y---GRSSVRRVALETGKVEA 142 (276)
Q Consensus 114 ~dg~LyeStG~---y---g~S~I~~iDl~tgkv~~ 142 (276)
.+++||+..|. . -.+.+.++|+++.+=..
T Consensus 10 ~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~ 44 (49)
T PF07646_consen 10 LDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTE 44 (49)
T ss_pred ECCEEEEECCcccCCCCcccceeEEEECCCCEEee
Confidence 46899987774 1 23678899998876443
No 437
>TIGR02781 VirB9 P-type conjugative transfer protein VirB9. The VirB9 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in a type IV secretion system. VirB9 is a homolog of the F-type conjugative transfer system TraK protein (which is believed to be an outer membrane pore-forming secretin, TIGR02756) as well as the Ti system TrbG protein.
Probab=27.15 E-value=2.8e+02 Score=25.44 Aligned_cols=50 Identities=20% Similarity=0.161 Sum_probs=34.9
Q ss_pred CCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEE
Q 023864 124 LYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFI 174 (276)
Q Consensus 124 ~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V 174 (276)
-|..+.|.+++..-|.+ -.+.|+++--=+.++.-+..-|++.-.++.+|+
T Consensus 34 ~Y~p~~v~~V~~~~g~~-T~I~f~~gE~I~~v~~GDt~~W~v~~~~n~i~I 83 (243)
T TIGR02781 34 VYNPDDVVRVVTSYGYS-TTIEFADDETIKTVAVGDSKAWEVTPNGNKLFI 83 (243)
T ss_pred EcCCCCEEEEEEECCEE-EEEEeCCCCEEEEecccCCcceEEEcCCCEEEE
Confidence 58899999999888865 455666542234555545678888888777776
No 438
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=27.10 E-value=1.3e+02 Score=22.52 Aligned_cols=34 Identities=24% Similarity=0.055 Sum_probs=20.3
Q ss_pred eeeeeEE-ECC--EEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 237 NLNELEF-IKG--EVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 237 ~lNELE~-idG--~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
.+.|+|+ .+| ++++-.-.-...=+.|||.||+++
T Consensus 44 ~v~~ve~~~~g~yev~~~~~dG~~~ev~vD~~tG~V~ 80 (83)
T PF13670_consen 44 QVREVEFDDDGCYEVEARDKDGKKVEVYVDPATGEVV 80 (83)
T ss_pred ceEEEEEcCCCEEEEEEEECCCCEEEEEEcCCCCeEe
Confidence 4556777 444 255333222146688999997764
No 439
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=27.08 E-value=5.8e+02 Score=24.88 Aligned_cols=145 Identities=13% Similarity=0.145 Sum_probs=84.9
Q ss_pred CCEEEEEcCCCC----CCeEEEEeCCCCc---EEEEeecCCCceEEEEEEeCCEEEEEE-------eeCCEEEEEeCCCC
Q 023864 115 NDTLFESTGLYG----RSSVRRVALETGK---VEAINQMEGSYFGEGLTLLGEKLFQVT-------WLQKTGFIYDQNNL 180 (276)
Q Consensus 115 dg~LyeStG~yg----~S~I~~iDl~tgk---v~~~~~l~~~~FgEGit~~g~~LyqlT-------wk~~~v~V~D~~tl 180 (276)
+++.|+=.|+.. -+.++.+|++|.+ ...+-.+|...=|-...+.|+..|+.- --++.+.++|.+|.
T Consensus 88 ~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~Tm 167 (392)
T KOG4693|consen 88 QDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATM 167 (392)
T ss_pred cceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccce
Confidence 467666566543 2679999999974 333335666555667778888888754 34567788887655
Q ss_pred c--EEEEEecCCCCeeE-E---eeCCCEEEE------------ECC---CceEEEEcCCCCcEEEEEEee--eCCEeeee
Q 023864 181 N--KLEEFTHQMKDGWG-L---ATDGKVLFG------------SDG---SSMLYQIDPQTLKVIRKDIVR--YKGREVRN 237 (276)
Q Consensus 181 k--~i~~~~~~~~EGWG-L---T~Dg~~L~v------------SDG---S~~L~viDp~t~~vi~~I~V~--~~g~pv~~ 237 (276)
+ .+.++..| .-|- + +--+...|+ |.- .++|..+|.+|..-.+.-+.+ ..|+.-+.
T Consensus 168 tWr~~~Tkg~P--prwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS 245 (392)
T KOG4693|consen 168 TWREMHTKGDP--PRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHS 245 (392)
T ss_pred eeeehhccCCC--chhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccc
Confidence 4 44554322 2332 1 111233333 221 568999999998877653332 24443332
Q ss_pred eeeeEEECCEEEE--------EeCCCCCeEEEEeCCC
Q 023864 238 LNELEFIKGEVWA--------NVWQVWPCIPYAYLQA 266 (276)
Q Consensus 238 lNELE~idG~lyA--------Nvw~s~d~I~vIDp~T 266 (276)
. =..||++|+ |+ .- |.+...||.|
T Consensus 246 ~---fvYng~~Y~FGGYng~ln~-Hf-ndLy~FdP~t 277 (392)
T KOG4693|consen 246 T---FVYNGKMYMFGGYNGTLNV-HF-NDLYCFDPKT 277 (392)
T ss_pred e---EEEcceEEEecccchhhhh-hh-cceeeccccc
Confidence 2 134666553 33 34 6788888887
No 440
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=26.93 E-value=2.9e+02 Score=27.32 Aligned_cols=121 Identities=13% Similarity=0.109 Sum_probs=73.8
Q ss_pred EEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC--CCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEe
Q 023864 110 LLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME--GSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFT 187 (276)
Q Consensus 110 L~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~--~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~ 187 (276)
+-|++.|.||+.+- .+..|..||--+++-++++.-. ..-..-.+=-.|++...-.-++..+..|...|.+.+.++.
T Consensus 267 V~Ys~t~~lYvTaS--kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt 344 (430)
T KOG0640|consen 267 VRYSSTGSLYVTAS--KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYT 344 (430)
T ss_pred EEecCCccEEEEec--cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEe
Confidence 45777899998544 6778999998887765554211 1111111111255655556688889999999999999885
Q ss_pred cCCCCeeE-------EeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCC
Q 023864 188 HQMKDGWG-------LATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKG 232 (276)
Q Consensus 188 ~~~~EGWG-------LT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g 232 (276)
-...-|-- +.+..++++.-| .++.|--+|..|...+.....+-+|
T Consensus 345 GAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~ 397 (430)
T KOG0640|consen 345 GAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNG 397 (430)
T ss_pred cCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCC
Confidence 21000000 122233443344 5778888888887777777776555
No 441
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=26.92 E-value=7.1e+02 Score=26.49 Aligned_cols=88 Identities=14% Similarity=0.154 Sum_probs=47.5
Q ss_pred CCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe---CCEEEEEEeeCCEEEEE-----e----CCCCcEEEEEecCCCCe
Q 023864 126 GRSSVRRVALETGKVEAINQMEGSYFGEGLTLL---GEKLFQVTWLQKTGFIY-----D----QNNLNKLEEFTHQMKDG 193 (276)
Q Consensus 126 g~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~---g~~LyqlTwk~~~v~V~-----D----~~tlk~i~~~~~~~~EG 193 (276)
+.+.+++||...+.++.+..++..--=..+.+. ++......--.+.+.+| | ..+...++++.+.
T Consensus 49 ~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~---- 124 (631)
T PF12234_consen 49 SRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDIS---- 124 (631)
T ss_pred CCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEee----
Confidence 458999999999988777766322111222221 12223333333444433 2 2355677777654
Q ss_pred eEEe--eCCCEEEEECC------CceEEEEcCC
Q 023864 194 WGLA--TDGKVLFGSDG------SSMLYQIDPQ 218 (276)
Q Consensus 194 WGLT--~Dg~~L~vSDG------S~~L~viDp~ 218 (276)
.+| +=|+..|+.|| .+++++.|..
T Consensus 125 -~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk~ 156 (631)
T PF12234_consen 125 -SHTPHPIGDSIWLKDGTLVVGSGNQLFVFDKW 156 (631)
T ss_pred -cCCCCCccceeEecCCeEEEEeCCEEEEECCC
Confidence 222 23455666665 6788888743
No 442
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=26.74 E-value=6.8e+02 Score=25.32 Aligned_cols=153 Identities=18% Similarity=0.163 Sum_probs=96.6
Q ss_pred cCCCCCceEEEEecC--CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCce------EEEEEEe--CCEEEEEEeeCC
Q 023864 101 HDPRAFTQGLLYAEN--DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYF------GEGLTLL--GEKLFQVTWLQK 170 (276)
Q Consensus 101 hd~~aFTQGL~~~~d--g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~F------gEGit~~--g~~LyqlTwk~~ 170 (276)
|....| ||.|+|- |+|. +|. -...|+.+.+.+|.- ++++++| -|+|... .+.+|.----++
T Consensus 210 hk~EGy--~LdWSp~~~g~Ll--sGD-c~~~I~lw~~~~g~W----~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dg 280 (440)
T KOG0302|consen 210 HKGEGY--GLDWSPIKTGRLL--SGD-CVKGIHLWEPSTGSW----KVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDG 280 (440)
T ss_pred cCccce--eeecccccccccc--cCc-cccceEeeeeccCce----eecCccccccccchhhhccCCccCceEEeeecCc
Confidence 555666 8999873 5565 553 467788888888753 2333333 4666663 245666666789
Q ss_pred EEEEEeCCCCcEEEEEecC--CCCeeEEeeCCCE-EEEECC-CceEEEEcCCCCcEEEEEEe-eeCCEeeeeeeeeEEE-
Q 023864 171 TGFIYDQNNLNKLEEFTHQ--MKDGWGLATDGKV-LFGSDG-SSMLYQIDPQTLKVIRKDIV-RYKGREVRNLNELEFI- 244 (276)
Q Consensus 171 ~v~V~D~~tlk~i~~~~~~--~~EGWGLT~Dg~~-L~vSDG-S~~L~viDp~t~~vi~~I~V-~~~g~pv~~lNELE~i- 244 (276)
.+-|+|.........+... ..+==.++.+++. |++|-| ...+.++|..+|+.-+-|.. .....||.. +||.
T Consensus 281 sIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pIts---ieW~p 357 (440)
T KOG0302|consen 281 SIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITS---IEWHP 357 (440)
T ss_pred eEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeE---EEecc
Confidence 9999999888555444322 0111135655544 566555 56899999999987644433 334456654 4576
Q ss_pred -CCEEEEEeCCCCCeEEEEeCCC
Q 023864 245 -KGEVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 245 -dG~lyANvw~s~d~I~vIDp~T 266 (276)
+..++|..... |.|..=|...
T Consensus 358 ~e~s~iaasg~D-~QitiWDlsv 379 (440)
T KOG0302|consen 358 HEDSVIAASGED-NQITIWDLSV 379 (440)
T ss_pred ccCceEEeccCC-CcEEEEEeec
Confidence 44588888777 8888877654
No 443
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=26.65 E-value=5e+02 Score=25.81 Aligned_cols=116 Identities=17% Similarity=0.257 Sum_probs=77.6
Q ss_pred eEEEEEEe---cCCCCCceEEEEecC-CE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-------CC
Q 023864 93 IQVVNEFP---HDPRAFTQGLLYAEN-DT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-------GE 160 (276)
Q Consensus 93 ~~Vv~~~P---hd~~aFTQGL~~~~d-g~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-------g~ 160 (276)
..++++|. ||...||=--.++-+ +. +...+| -..-|+++|+.+++.... +-|-|=++- +-
T Consensus 77 ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G--~~GvIrVid~~~~~~~~~------~~ghG~sINeik~~p~~~ 148 (385)
T KOG1034|consen 77 IRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG--YLGVIRVIDVVSGQCSKN------YRGHGGSINEIKFHPDRP 148 (385)
T ss_pred eeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec--ceeEEEEEecchhhhccc------eeccCccchhhhcCCCCC
Confidence 46677772 666777776677644 34 555556 567899999999886543 334443332 23
Q ss_pred EEEEEEeeCCEEEEEeCCCCcEEEEEecCCCCeeE-------EeeCCCEEEEECC-CceEEEEcCCC
Q 023864 161 KLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWG-------LATDGKVLFGSDG-SSMLYQIDPQT 219 (276)
Q Consensus 161 ~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~EGWG-------LT~Dg~~L~vSDG-S~~L~viDp~t 219 (276)
.|.+.--+++.+-++|..+..-+.-|-= -||-. +..||+ -++|-| +.+|.+++..+
T Consensus 149 qlvls~SkD~svRlwnI~~~~Cv~VfGG--~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 149 QLVLSASKDHSVRLWNIQTDVCVAVFGG--VEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNV 212 (385)
T ss_pred cEEEEecCCceEEEEeccCCeEEEEecc--cccccCcEEEEEEcCCCC-eeeccCCcceEEEEecCh
Confidence 4888888999999999999998888751 13322 345677 567887 66777777663
No 444
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=26.43 E-value=1.9e+02 Score=19.95 Aligned_cols=21 Identities=10% Similarity=0.153 Sum_probs=17.9
Q ss_pred CEEEEECCCceEEEEcCC-CCc
Q 023864 201 KVLFGSDGSSMLYQIDPQ-TLK 221 (276)
Q Consensus 201 ~~L~vSDGS~~L~viDp~-t~~ 221 (276)
+.|..|...++|+++|.. +|.
T Consensus 16 DLL~~~E~~g~vhi~D~R~~f~ 37 (43)
T PF10313_consen 16 DLLAWAEHQGRVHIVDTRSNFM 37 (43)
T ss_pred cEEEEEccCCeEEEEEcccCcc
Confidence 688899999999999998 453
No 445
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=25.87 E-value=96 Score=32.41 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=28.4
Q ss_pred eEE---EEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEE
Q 023864 108 QGL---LYAENDTLFESTGLYGRSSVRRVALETGKVEAI 143 (276)
Q Consensus 108 QGL---~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~ 143 (276)
-|| .++|||++++..| +++-|.+|.++.++|+++
T Consensus 333 GGLLCvcWSPDGKyIvtGG--EDDLVtVwSf~erRVVAR 369 (636)
T KOG2394|consen 333 GGLLCVCWSPDGKYIVTGG--EDDLVTVWSFEERRVVAR 369 (636)
T ss_pred cceEEEEEcCCccEEEecC--CcceEEEEEeccceEEEe
Confidence 565 6899999888666 777899999999999887
No 446
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=25.77 E-value=4.8e+02 Score=26.12 Aligned_cols=114 Identities=15% Similarity=0.124 Sum_probs=62.6
Q ss_pred EEEeCCEEEEEEeeCCEEEEEeCCCCcE--EEEEecC------CCCee--EEeeCCCEEEEEC--CCc----eEEEEcCC
Q 023864 155 LTLLGEKLFQVTWLQKTGFIYDQNNLNK--LEEFTHQ------MKDGW--GLATDGKVLFGSD--GSS----MLYQIDPQ 218 (276)
Q Consensus 155 it~~g~~LyqlTwk~~~v~V~D~~tlk~--i~~~~~~------~~EGW--GLT~Dg~~L~vSD--GS~----~L~viDp~ 218 (276)
...+|+++.+++-.+......+...||. +..|+.. ....+ |.-. +.+.|++. |.. +||.++.-
T Consensus 139 a~fDGe~VLvvsR~~~~pHLLkvsdLK~g~inpI~LdlTgVtgGTf~yNmgAl~-nGH~Y~asLSG~~~SPLKiY~w~tP 217 (442)
T PF15416_consen 139 ASFDGEHVLVVSRGTTKPHLLKVSDLKAGEINPIPLDLTGVTGGTFSYNMGALV-NGHSYLASLSGGKASPLKIYYWETP 217 (442)
T ss_pred cCCCCcEEEEEecCCCCceeeehhHhhcCCccceeeecccccCcccccchhhhc-CCeEEEEeccCCCCCceEEEEecCC
Confidence 3345677777777676777777766663 3444422 00111 2112 45667655 422 78999866
Q ss_pred C--CcEEEEEEeee---CCEeee---eeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 219 T--LKVIRKDIVRY---KGREVR---NLNELEFIKGEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 219 t--~~vi~~I~V~~---~g~pv~---~lNELE~idG~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
| -+++..|.|+. .|..-. .+|==|--||++|-.--.. ..|++++....+.+
T Consensus 218 ts~PevIa~inV~~I~gAg~RhGDn~S~nlD~nGnGyiFFgdnaa-t~ilR~~vsn~k~v 276 (442)
T PF15416_consen 218 TSAPEVIADINVGDIPGAGNRHGDNFSLNLDENGNGYIFFGDNAA-TNILRFTVSNYKTV 276 (442)
T ss_pred CCCceEEEeeeeccCcccccccCcceeEEeccCCceEEEecCCcc-ceEEEEEccCcccc
Confidence 5 46889999975 111111 1221112267888553234 56888887765543
No 447
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=25.63 E-value=4.3e+02 Score=29.50 Aligned_cols=107 Identities=18% Similarity=0.123 Sum_probs=70.2
Q ss_pred CEEEEEcCCCCCCeEEEEeCCCCcEEEEe----ecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCC
Q 023864 116 DTLFESTGLYGRSSVRRVALETGKVEAIN----QMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMK 191 (276)
Q Consensus 116 g~LyeStG~yg~S~I~~iDl~tgkv~~~~----~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~ 191 (276)
+.|..+.| ..|+.||+..+.+++.. -++.+ ++||.-..-....+.--+.+.+.+-+ ..++.+..++- ..
T Consensus 18 ~~llag~g----p~i~~yd~~s~~li~~~~~~~~~~~H-~~e~~~~l~~~~~v~~~~~~~v~~~~-~~~~~~~~~s~-wi 90 (967)
T KOG0974|consen 18 DYLLAGSG----PEILVYDLSSGCLIRHLIQSKILEVH-RGEGKVKLLSGKIVTCAKSDEVYVKE-ASNQIIERFSD-WI 90 (967)
T ss_pred ceeeecCC----CceEEeeCCchhHhhhhhhhcccccc-cccccceeccceEEEEEeecceeecc-hhhhhhhhccc-cc
Confidence 46664433 78999999998766554 23344 88888766555555555555555433 22333333321 23
Q ss_pred CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEee
Q 023864 192 DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVR 229 (276)
Q Consensus 192 EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~ 229 (276)
-||++-.+.+.+++..+.|.|...|+....+..++.-.
T Consensus 91 ~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~ 128 (967)
T KOG0974|consen 91 FGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSD 128 (967)
T ss_pred cccchhhhcceEEEEEcCceEEEEecccCceehhcCCC
Confidence 55788888899999999999999999887776665443
No 448
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=25.39 E-value=57 Score=35.22 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=21.4
Q ss_pred EEEEEEeeCCEEEEEeCCCCcEEE
Q 023864 161 KLFQVTWLQKTGFIYDQNNLNKLE 184 (276)
Q Consensus 161 ~LyqlTwk~~~v~V~D~~tlk~i~ 184 (276)
..||+.|+.|-+.|+...++..-+
T Consensus 818 ~FWQmvWe~G~~vIV~Lt~l~Eng 841 (1004)
T KOG0793|consen 818 DFWQMVWESGCVVIVMLTPLAENG 841 (1004)
T ss_pred HHHHHHHHcCcEEEEEecChhhcc
Confidence 679999999999999998887765
No 449
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=25.39 E-value=2.2e+02 Score=31.73 Aligned_cols=76 Identities=11% Similarity=0.217 Sum_probs=49.4
Q ss_pred CCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCC--CceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCc
Q 023864 105 AFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEG--SYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLN 181 (276)
Q Consensus 105 aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~--~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk 181 (276)
-...||.|++..+ |-.... |..++.-+.++. .-.++ .+.. -+| |||-+.+.+|-..||.+.|.-+|....+
T Consensus 1156 gLPNGLtfdpfs~~LCWvDA--Gt~rleC~~p~g-~gRR~-i~~~LqYPF--~itsy~~~fY~TDWk~n~vvsv~~~~~~ 1229 (1289)
T KOG1214|consen 1156 GLPNGLTFDPFSKLLCWVDA--GTKRLECTLPDG-TGRRV-IQNNLQYPF--SITSYADHFYHTDWKRNGVVSVNKHSGQ 1229 (1289)
T ss_pred CCCCCceeCcccceeeEEec--CCcceeEecCCC-Ccchh-hhhcccCce--eeeeccccceeeccccCceEEeeccccc
Confidence 3457999998754 433233 556666665542 11122 1222 345 8899999999999999999999987666
Q ss_pred EEEEE
Q 023864 182 KLEEF 186 (276)
Q Consensus 182 ~i~~~ 186 (276)
....+
T Consensus 1230 ~td~~ 1234 (1289)
T KOG1214|consen 1230 FTDEY 1234 (1289)
T ss_pred ccccc
Confidence 54433
No 450
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=25.37 E-value=7.1e+02 Score=26.57 Aligned_cols=113 Identities=12% Similarity=0.035 Sum_probs=64.8
Q ss_pred EEEEe-CCEEEEEEeeCCEEEEEeCCCCcEEEEEecC-C----CCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEE
Q 023864 154 GLTLL-GEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-M----KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDI 227 (276)
Q Consensus 154 Git~~-g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~-~----~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~ 227 (276)
++..+ ++.||+-| .+.+.-|..+.++..+.+.-. . -|.-...-++..+...+...-+.+.++.|+.+++. .
T Consensus 294 sL~~D~dGsLWv~t--~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~s-v 370 (671)
T COG3292 294 SLWLDTDGSLWVGT--YGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRS-V 370 (671)
T ss_pred ceeeccCCCEeeec--cCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEE-e
Confidence 44554 36788777 344444555656665555321 0 01111222445555556566888899999988877 3
Q ss_pred eeeCCEeeeeeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEEEEE
Q 023864 228 VRYKGREVRNLNELEFIKGEVWANVWQVWPCIPYAYLQAFGSSLVY 273 (276)
Q Consensus 228 V~~~g~pv~~lNELE~idG~lyANvw~s~d~I~vIDp~T~~v~l~~ 273 (276)
+..-|.-+.-+-|-+ +|.+|+.. +. |-+++.|+++..-++.+
T Consensus 371 ~q~Rg~nit~~~~d~--~g~lWlgs-~q-~GLsrl~n~n~~avlde 412 (671)
T COG3292 371 HQLRGMNITTTLEDS--RGRLWLGS-MQ-NGLSRLDNKNEWAVLDE 412 (671)
T ss_pred eeccccccchhhhcc--CCcEEEEe-cc-cchhhhccCCccccccc
Confidence 344444444333333 77899776 44 67888888884444443
No 451
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.11 E-value=2.5e+02 Score=29.47 Aligned_cols=69 Identities=20% Similarity=0.236 Sum_probs=36.5
Q ss_pred CCCeEEEEeCCCCcEEEEeecCCCceE-EEEEEe------CCEEEEEEe------eCCEEEEEeCCCCcEEEEEecCCCC
Q 023864 126 GRSSVRRVALETGKVEAINQMEGSYFG-EGLTLL------GEKLFQVTW------LQKTGFIYDQNNLNKLEEFTHQMKD 192 (276)
Q Consensus 126 g~S~I~~iDl~tgkv~~~~~l~~~~Fg-EGit~~------g~~LyqlTw------k~~~v~V~D~~tlk~i~~~~~~~~E 192 (276)
--+.+.++|+.+|.+. +..-+..+++ |=+=+- .|..|++.. +.--+.|+|+.+++.+++...+.+-
T Consensus 486 ~~~g~vKvDl~~g~~~-~w~~~~~~~~GEP~FVP~p~~~eEDdG~Iv~~v~~~~~~~s~l~ildAK~l~~~ar~~vp~rv 564 (582)
T KOG1285|consen 486 KVSGIVKVDLVTGEVK-KWREGGGRPGGEPIFVPRPGTLEEDDGYIVSVVHDESKEKSFLLILDAKTLEEVARVEVPTRV 564 (582)
T ss_pred CCCeEEEEEecCCcee-eEecCCCccCCCceEecCCCCcccCCcEEEEEEEcCCCCcccEEEEeccccceeeEEecCCCC
Confidence 3577888999888763 3334444444 333221 123333322 2334566777777777776655333
Q ss_pred eeE
Q 023864 193 GWG 195 (276)
Q Consensus 193 GWG 195 (276)
.+|
T Consensus 565 P~g 567 (582)
T KOG1285|consen 565 PYG 567 (582)
T ss_pred CCc
Confidence 333
No 452
>cd01272 FE65_N Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor protein-binding. It contains an N-terminal WW domain followed by two PTB domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=24.89 E-value=1.3e+02 Score=25.83 Aligned_cols=31 Identities=35% Similarity=0.511 Sum_probs=25.4
Q ss_pred CCCEEEEECCCceEEEEcCCCCcEEEEEEee
Q 023864 199 DGKVLFGSDGSSMLYQIDPQTLKVIRKDIVR 229 (276)
Q Consensus 199 Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~ 229 (276)
+|+.++|---++.|..+||.+..++...++.
T Consensus 51 eGk~~~m~L~~g~lkLiDP~~~s~LhSqPI~ 81 (138)
T cd01272 51 DGKDLFMDLDEGALKLIDPENLTVLHSQPIH 81 (138)
T ss_pred CcceeEEEecCCceEeeCCCCCceEEeeeee
Confidence 7899999777899999999999876655443
No 453
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=24.83 E-value=70 Score=25.25 Aligned_cols=20 Identities=35% Similarity=0.388 Sum_probs=15.5
Q ss_pred CCCeEEEEeCCCCcEEEEee
Q 023864 126 GRSSVRRVALETGKVEAINQ 145 (276)
Q Consensus 126 g~S~I~~iDl~tgkv~~~~~ 145 (276)
|.-.|.++|.+||+|++.+|
T Consensus 66 ~~~vVkViD~~T~eVIRqIP 85 (107)
T PF03646_consen 66 GRVVVKVIDKETGEVIRQIP 85 (107)
T ss_dssp TEEEEEEEETTT-SEEEEE-
T ss_pred CcEEEEEEECCCCcEEEeCC
Confidence 45678899999999999975
No 454
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=24.77 E-value=1.3e+02 Score=24.32 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=23.3
Q ss_pred eCCCEEEEECCCceEEEEcCCCCcEEEEEEeee
Q 023864 198 TDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 198 ~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~ 230 (276)
.-...|+.+|+ .+|+.+||.+..+.+.|....
T Consensus 27 ~kkR~liLTd~-PrL~Yvdp~~~~~KGeI~~~~ 58 (104)
T PF14593_consen 27 AKKRQLILTDG-PRLFYVDPKKMVLKGEIPWSK 58 (104)
T ss_dssp EEEEEEEEETT-TEEEEEETTTTEEEEEE--ST
T ss_pred EEEEEEEEccC-CEEEEEECCCCeECcEEecCC
Confidence 33456778887 788888999998888888763
No 455
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=24.65 E-value=45 Score=32.47 Aligned_cols=47 Identities=15% Similarity=0.199 Sum_probs=24.6
Q ss_pred CchhhHHHHHHHhhhhhhccccccccCCCCCCCCceeeeEEEEEEecCCCCC
Q 023864 55 IPAVMLIFFFLCGFVLLCISSNMWIRFPGVDQSPSIYTIQVVNEFPHDPRAF 106 (276)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~Vv~~~Phd~~aF 106 (276)
.++++|++|=++||.+|.|.+. |.... +.+.-. ..+|+....|+...
T Consensus 2 ~a~~lSv~lHvlLi~lL~~g~~-~~~~~---~~~~~~-~~~i~Av~VD~~~v 48 (346)
T TIGR02794 2 RAFLLSLLLHILLLGLLILGSL-YHSVK---PEPGGG-AEIIQAVLVDPGAV 48 (346)
T ss_pred chHHHHHHHHHHHHHHHHHhhc-ccccC---CCCccc-ccccccccCChhhh
Confidence 4788888887777766655432 32211 111111 34666666665544
No 456
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=24.51 E-value=97 Score=18.18 Aligned_cols=20 Identities=10% Similarity=0.029 Sum_probs=14.7
Q ss_pred CCCceEEEEecCCEEEEEcC
Q 023864 104 RAFTQGLLYAENDTLFESTG 123 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG 123 (276)
..+...+.-+++|.||.+|-
T Consensus 4 ~n~I~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 4 NNNIYSIYEDSDGNLWIGTY 23 (24)
T ss_dssp SSCEEEEEE-TTSCEEEEET
T ss_pred CCeEEEEEEcCCcCEEEEeC
Confidence 34567888888899998874
No 457
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=24.00 E-value=1.5e+02 Score=23.25 Aligned_cols=15 Identities=7% Similarity=0.169 Sum_probs=9.9
Q ss_pred EEEeCCCCcEEEEEe
Q 023864 173 FIYDQNNLNKLEEFT 187 (276)
Q Consensus 173 ~V~D~~tlk~i~~~~ 187 (276)
-|+|..|.++|++||
T Consensus 71 kViD~~T~eVIRqIP 85 (107)
T PF03646_consen 71 KVIDKETGEVIRQIP 85 (107)
T ss_dssp EEEETTT-SEEEEE-
T ss_pred EEEECCCCcEEEeCC
Confidence 457888888888877
No 458
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=23.55 E-value=1.7e+02 Score=28.28 Aligned_cols=87 Identities=21% Similarity=0.203 Sum_probs=51.6
Q ss_pred CCCCCceeeeEEEEEEecCCCCCceEEEEecC-CEEEEEcCCCCCCeEEEEeC--C-----CCcEEEEeec-CC-CceEE
Q 023864 84 VDQSPSIYTIQVVNEFPHDPRAFTQGLLYAEN-DTLFESTGLYGRSSVRRVAL--E-----TGKVEAINQM-EG-SYFGE 153 (276)
Q Consensus 84 ~~~~~~~~t~~Vv~~~Phd~~aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl--~-----tgkv~~~~~l-~~-~~FgE 153 (276)
.+++--..+-+.|+++..+. =|+|+..+.. |.||. ++..+..|.+ + +|+++.+++= +. ..=-|
T Consensus 186 ~d~gnGkv~~k~vR~fk~~t--QTEG~VaDdEtG~LYI-----aeEdvaiWK~~Aep~~G~~g~~idr~~d~~~LtdDvE 258 (364)
T COG4247 186 IDQGNGKVGTKLVRQFKIPT--QTEGMVADDETGFLYI-----AEEDVAIWKYEAEPNRGNTGRLIDRIKDLSYLTDDVE 258 (364)
T ss_pred EecCCceEcceeeEeeecCC--cccceeeccccceEEE-----eeccceeeecccCCCCCCccchhhhhcCchhhccccc
Confidence 45566667888999999854 5799999753 77886 3344444543 3 4667666532 20 11247
Q ss_pred EEEEe---CCEEEEEE--eeCCEEEEEeC
Q 023864 154 GLTLL---GEKLFQVT--WLQKTGFIYDQ 177 (276)
Q Consensus 154 Git~~---g~~LyqlT--wk~~~v~V~D~ 177 (276)
|+++. +++-|.+. .-+++--+|-+
T Consensus 259 GltiYy~pnGkGYL~aSSQGnNtya~y~R 287 (364)
T COG4247 259 GLTIYYGPNGKGYLLASSQGNNTYAAYTR 287 (364)
T ss_pred ccEEEEcCCCcEEEEEecCCCceEEEEEe
Confidence 88875 45555443 33444444543
No 459
>TIGR03500 FliO_TIGR flagellar biosynthetic protein FliO. This short protein found in flagellar biosynthesis operons contains a highly hydrophobic N-terminal sequence followed generally by two basic amino acids. This region is reminiscent of but distinct from the twin-arginine translocation signal sequence. Some instances of this gene have been names "FliZ" but phylogenetic tree building supports a single FliO family.
Probab=23.31 E-value=1.7e+02 Score=21.27 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=17.0
Q ss_pred eeeEEEEEEecCCCCCceEEEEe
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYA 113 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~ 113 (276)
-..+|+++.|.++....+=..+.
T Consensus 29 ~~i~vl~~~~Lg~~~~l~vV~v~ 51 (69)
T TIGR03500 29 KGLKVLESLPLGPKESLVLVEVG 51 (69)
T ss_pred ccEEEEEEEeECCCCEEEEEEEC
Confidence 35799999999888765555553
No 460
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=23.06 E-value=6.4e+02 Score=23.73 Aligned_cols=97 Identities=12% Similarity=0.071 Sum_probs=60.2
Q ss_pred eEEEEe-cCC--EEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEE--EEEEeCCEEEEEEee----CCEEEEEeCC
Q 023864 108 QGLLYA-END--TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGE--GLTLLGEKLFQVTWL----QKTGFIYDQN 178 (276)
Q Consensus 108 QGL~~~-~dg--~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgE--Git~~g~~LyqlTwk----~~~v~V~D~~ 178 (276)
+...+. +++ .|+.+- .-|-..|..+|.++++.. .+.-++-..-+ ++...++.||-..-. ...++.++.+
T Consensus 238 ~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 238 DPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp SEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred cccccccCCCCEEEEEEE-cCCCcEEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 466665 443 466666 568889999999988743 44444433323 233335788877765 4599999988
Q ss_pred CCcEEEEEecCCCC--eeEEeeCCCEEEEE
Q 023864 179 NLNKLEEFTHQMKD--GWGLATDGKVLFGS 206 (276)
Q Consensus 179 tlk~i~~~~~~~~E--GWGLT~Dg~~L~vS 206 (276)
+...++.+.-..+. ...+++||++++.+
T Consensus 316 ~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 316 SGGEPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp ETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred CCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence 45555666543223 45688999988774
No 461
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=23.06 E-value=9.9e+02 Score=25.93 Aligned_cols=117 Identities=12% Similarity=0.091 Sum_probs=69.7
Q ss_pred ecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCC
Q 023864 100 PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNN 179 (276)
Q Consensus 100 Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~t 179 (276)
+|... ++-+..-|++ .|.+++ .+-.|+.|.- |+++++. .+....--|+++.++.-|.--=.++.+..+|. +
T Consensus 138 gH~as--VWAv~~l~e~-~~vTgs--aDKtIklWk~--~~~l~tf-~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ 208 (745)
T KOG0301|consen 138 GHTAS--VWAVASLPEN-TYVTGS--ADKTIKLWKG--GTLLKTF-SGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-D 208 (745)
T ss_pred Ccchh--eeeeeecCCC-cEEecc--CcceeeeccC--Cchhhhh-ccchhheeeeEEecCCCeEeecCCceEEEEec-c
Confidence 56433 3477777766 666444 6667777754 4444433 24445567899988766666667888888998 5
Q ss_pred CcEEEEEe-cCCCCeeEEe-eCCCEEEEECC-CceEEEEcCCCCcEEEEEEe
Q 023864 180 LNKLEEFT-HQMKDGWGLA-TDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIV 228 (276)
Q Consensus 180 lk~i~~~~-~~~~EGWGLT-~Dg~~L~vSDG-S~~L~viDp~t~~vi~~I~V 228 (276)
.+.+.+.. +. ..=|-++ .-++.+++|-| ..+|.+++-. +....|.+
T Consensus 209 ge~l~~~~ght-n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~l 257 (745)
T KOG0301|consen 209 GEVLLEMHGHT-NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITL 257 (745)
T ss_pred Cceeeeeeccc-eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEec
Confidence 55555442 22 1223344 33456777776 5567776654 44445544
No 462
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=22.99 E-value=3.3e+02 Score=30.06 Aligned_cols=57 Identities=19% Similarity=0.183 Sum_probs=33.5
Q ss_pred cCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcE
Q 023864 114 ENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNK 182 (276)
Q Consensus 114 ~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~ 182 (276)
.||.||. |. -++....+|++||+...+..... --..++.+--.+-+++.+|.++...
T Consensus 106 sdGi~ys--g~-k~d~~~lvD~~tg~~~~tf~~~~---------~~~~~v~~grt~ytv~m~d~~~~~~ 162 (903)
T KOG1027|consen 106 SDGILYS--GS-KQDIWYLVDPKTGEIDYTFNTAE---------PIKQLVYLGRTNYTVTMYDKNVRGK 162 (903)
T ss_pred CCCeEEe--cc-cccceEEecCCccceeEEEecCC---------cchhheecccceeEEecccCcccCc
Confidence 3466773 32 56778888999998544433222 1134555555666777777655543
No 463
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.81 E-value=1.3e+02 Score=31.46 Aligned_cols=63 Identities=11% Similarity=0.127 Sum_probs=39.5
Q ss_pred CEEEEECC-CceEEEEcCCCCcEEEEEEeeeCCEeeeeee------eeEEECCEEEEEeCCCCCeEEEEeCCCCc
Q 023864 201 KVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLN------ELEFIKGEVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 201 ~~L~vSDG-S~~L~viDp~t~~vi~~I~V~~~g~pv~~lN------ELE~idG~lyANvw~s~d~I~vIDp~T~~ 268 (276)
..|+|+-+ -+.||.+|-++++++.++.+.++ .++..++ .|. ..+. ++. .++|.|.+|||.-..
T Consensus 346 nlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~-~e~T-lvG--Ls~n~vfriDpRv~~ 415 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLT-SEQT-LVG--LSDNSVFRIDPRVQG 415 (644)
T ss_pred ceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhccc-cccc-EEe--ecCCceEEecccccC
Confidence 45556444 78999999999999999999875 1111111 111 1122 222 344899999998543
No 464
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=22.70 E-value=2.4e+02 Score=18.66 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=25.6
Q ss_pred CEEEEEcCCC-----CCCeEEEEeCCCCcEEEEeecCCCceEEEEE
Q 023864 116 DTLFESTGLY-----GRSSVRRVALETGKVEAINQMEGSYFGEGLT 156 (276)
Q Consensus 116 g~LyeStG~y-----g~S~I~~iDl~tgkv~~~~~l~~~~FgEGit 156 (276)
++||+-.|.. ..+.+.++|+++++-.+.-.+|...++-.++
T Consensus 2 ~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~ 47 (49)
T PF13415_consen 2 NKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTAT 47 (49)
T ss_pred CEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEE
Confidence 4566655533 2367899999999776554555544544444
No 465
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=22.50 E-value=3.7e+02 Score=23.52 Aligned_cols=74 Identities=15% Similarity=0.197 Sum_probs=46.4
Q ss_pred CeEEEEeCCCCcEEEEeecCCCceEEE-----EEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCCCeeEEeeC-CC
Q 023864 128 SSVRRVALETGKVEAINQMEGSYFGEG-----LTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATD-GK 201 (276)
Q Consensus 128 S~I~~iDl~tgkv~~~~~l~~~~FgEG-----it~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~D-g~ 201 (276)
..+..+.+-+|+++.--.+|+..|+++ +++... + .-++-|-+.++..-|++. ...||..| |-
T Consensus 4 ~~~~i~sP~~G~vv~Ls~VpD~vFs~k~mGdGiAI~P~--------~--g~vvAPvdG~v~~iFpTk--HAigi~t~~Gv 71 (156)
T COG2190 4 KKEEIYSPLSGEVVPLSDVPDPVFSEKMVGDGVAIKPS--------E--GEVVAPVDGTVVLIFPTK--HAIGIETDEGV 71 (156)
T ss_pred ccEEEEccCCceEEEchhCCchHhhcccccCcEEEecC--------C--CeEEeccCcEEEEEeeCC--cEEEEEcCCCc
Confidence 456778899999988878887666554 444321 1 334456666666677754 77888765 55
Q ss_pred EEEEECCCceEE
Q 023864 202 VLFGSDGSSMLY 213 (276)
Q Consensus 202 ~L~vSDGS~~L~ 213 (276)
.+++==|=|+|.
T Consensus 72 EiLiHiGiDTV~ 83 (156)
T COG2190 72 EILIHIGIDTVK 83 (156)
T ss_pred EEEEEeceeeEE
Confidence 555544444443
No 466
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=22.33 E-value=7e+02 Score=23.93 Aligned_cols=106 Identities=14% Similarity=0.217 Sum_probs=59.5
Q ss_pred EEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC---Cce---EEEEEEe--------CCEE
Q 023864 97 NEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG---SYF---GEGLTLL--------GEKL 162 (276)
Q Consensus 97 ~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~---~~F---gEGit~~--------g~~L 162 (276)
.++|-|+.+==+=|++++|++|+.-+- ..-.|+++|+... .+..++-+. ..+ -.|+.+. .-+|
T Consensus 36 cqVpkD~~PQWRkl~WSpD~tlLa~a~--S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~EL 112 (282)
T PF15492_consen 36 CQVPKDPNPQWRKLAWSPDCTLLAYAE--STGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYEL 112 (282)
T ss_pred EecCCCCCchheEEEECCCCcEEEEEc--CCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeE
Confidence 356777776668999999998775433 5568999999753 333432211 111 1233332 1378
Q ss_pred EEEEeeCC-EEEEEeC---CCCcEEEEEecC--CCCeeE-EeeC-C-CEEEE
Q 023864 163 FQVTWLQK-TGFIYDQ---NNLNKLEEFTHQ--MKDGWG-LATD-G-KVLFG 205 (276)
Q Consensus 163 yqlTwk~~-~v~V~D~---~tlk~i~~~~~~--~~EGWG-LT~D-g-~~L~v 205 (276)
+++++... +-|.+.. ...+.--+|... .+.|.+ ..+| + +.|+|
T Consensus 113 lvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlV 164 (282)
T PF15492_consen 113 LVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLV 164 (282)
T ss_pred EEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEE
Confidence 88888754 2333333 355566666543 245665 3333 3 34555
No 467
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=21.85 E-value=7.8e+02 Score=24.30 Aligned_cols=164 Identities=12% Similarity=0.062 Sum_probs=94.8
Q ss_pred eeeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEe
Q 023864 90 IYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTW 167 (276)
Q Consensus 90 ~~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTw 167 (276)
.|.++-+.=||||..-||.| - -+-.+.+||..|-++....+++...|--.+... ...|..+-.
T Consensus 101 ky~iss~~WyP~DtGmFtss-------------S--FDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gt 165 (397)
T KOG4283|consen 101 KYAISSAIWYPIDTGMFTSS-------------S--FDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGT 165 (397)
T ss_pred eeeeeeeEEeeecCceeecc-------------c--ccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEec
Confidence 35555566666665444222 1 346789999999998888899988877666654 368888889
Q ss_pred eCCEEEEEeCCCCcEEEEEecCCCCeeEE--eeCCCEEEEECC-CceEEEEcCCCCcEEEEEEeee--CC-E--------
Q 023864 168 LQKTGFIYDQNNLNKLEEFTHQMKDGWGL--ATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRY--KG-R-------- 233 (276)
Q Consensus 168 k~~~v~V~D~~tlk~i~~~~~~~~EGWGL--T~Dg~~L~vSDG-S~~L~viDp~t~~vi~~I~V~~--~g-~-------- 233 (276)
++-++-..|.++..--.++.--..+=.++ +|--+++..+-+ +.++.++|...- -+-..|-+ ++ +
T Consensus 166 r~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRra--sgcf~~lD~hn~k~~p~~~~n~ 243 (397)
T KOG4283|consen 166 RDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRA--SGCFRVLDQHNTKRPPILKTNT 243 (397)
T ss_pred CCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecc--cceeEEeecccCccCccccccc
Confidence 99999999999887666654211111122 344455555543 556777774321 01111111 11 1
Q ss_pred -eeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCcEEE
Q 023864 234 -EVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQAFGSSL 271 (276)
Q Consensus 234 -pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T~~v~l 271 (276)
-....|-|.+. ||.-.+.+..+ |+|-+=+.++|+-.+
T Consensus 244 ah~gkvngla~tSd~~~l~~~gtd-~r~r~wn~~~G~ntl 282 (397)
T KOG4283|consen 244 AHYGKVNGLAWTSDARYLASCGTD-DRIRVWNMESGRNTL 282 (397)
T ss_pred cccceeeeeeecccchhhhhccCc-cceEEeecccCcccc
Confidence 11134445544 33322445444 778777777776443
No 468
>COG2834 LolA Outer membrane lipoprotein-sorting protein [Cell envelope biogenesis, outer membrane]
Probab=21.68 E-value=2.5e+02 Score=24.84 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=35.1
Q ss_pred CCCCceeeeEEEEEEecCCCCCce-EEEEec------------CCEEEEEcCCCCCCeEEEEeCCCCcEEEEe
Q 023864 85 DQSPSIYTIQVVNEFPHDPRAFTQ-GLLYAE------------NDTLFESTGLYGRSSVRRVALETGKVEAIN 144 (276)
Q Consensus 85 ~~~~~~~t~~Vv~~~Phd~~aFTQ-GL~~~~------------dg~LyeStG~yg~S~I~~iDl~tgkv~~~~ 144 (276)
.....-++.+.+++.+-.....++ |=.+.. ++.+.++.| +.|..||++..++....
T Consensus 36 ~~~i~~~s~~f~q~~~~g~~~~~~~g~~~~kkP~~~R~~~~~p~~~~ivsdG----~~v~iydp~~~q~~~~~ 104 (211)
T COG2834 36 LAKVKSYSASFTQTVESGSGKQTQEGKLWIKRPNLFRWEYESPDEQVIVSDG----KTVWIYDPDLEQVTKTW 104 (211)
T ss_pred HHhhccceeEEEEEEEcCCCceEEEEEEEEecCCeEEEEecCCCCcEEEECC----CEEEEECCCCceEEEEe
Confidence 344555777888887776666666 543321 122444544 78888888888776554
No 469
>COG5375 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.64 E-value=5.8e+02 Score=23.53 Aligned_cols=57 Identities=21% Similarity=0.243 Sum_probs=30.6
Q ss_pred ccccccccceeeeccCCchhhHHHHHHHhhhhhhccccccccC--CCCCCCCceeeeEEEEEEec
Q 023864 39 CMASNHFSRFRHYNKGIPAVMLIFFFLCGFVLLCISSNMWIRF--PGVDQSPSIYTIQVVNEFPH 101 (276)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~t~~Vv~~~Ph 101 (276)
-.+-.|-+|-|.+. +.+-|+.+++++......-|..+ ..........+++||=.=|+
T Consensus 23 ~~a~Rhs~rVr~Lk------i~lpl~a~~~a~~fi~~s~~rt~~~~~~~~~a~~~~gkivm~~P~ 81 (216)
T COG5375 23 ARARRHSRRVRRLK------IGLPLAAGGLALAFIAQSVWRTPALAVSLETAEIETGKIVLKKPR 81 (216)
T ss_pred HHHhhhccceeeee------ehHHHHHHHHHHhhhhhhhhhhhHHhhcccccccccCcEEEcccc
Confidence 34556777777655 33334444444445555566662 22233333467778777666
No 470
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=21.62 E-value=7.1e+02 Score=23.74 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=26.6
Q ss_pred CCEEEEEEeeCCEEEEEe-CCCCcEEEE--EecCCCCeeEE---ee-CCCEEEEECCCceEEE
Q 023864 159 GEKLFQVTWLQKTGFIYD-QNNLNKLEE--FTHQMKDGWGL---AT-DGKVLFGSDGSSMLYQ 214 (276)
Q Consensus 159 g~~LyqlTwk~~~v~V~D-~~tlk~i~~--~~~~~~EGWGL---T~-Dg~~L~vSDGS~~L~v 214 (276)
++.||+++ +.+.++.=| ++..+.-.+ ++.. ..|||+ .+ +.+.+|++=|+..|++
T Consensus 197 ~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~-~~~~~~ld~a~~~~~~~wa~gg~G~l~~ 257 (302)
T PF14870_consen 197 DGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIK-TNGYGILDLAYRPPNEIWAVGGSGTLLV 257 (302)
T ss_dssp TS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTS-S--S-EEEEEESSSS-EEEEESTT-EEE
T ss_pred CCCEEEEe-CCcEEEEccCCCCccccccccCCcc-cCceeeEEEEecCCCCEEEEeCCccEEE
Confidence 47999988 888888776 444444333 2221 356662 32 3456666666665554
No 471
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=21.58 E-value=8.1e+02 Score=24.38 Aligned_cols=167 Identities=15% Similarity=0.094 Sum_probs=100.1
Q ss_pred eeeeEEEEEEecCCCCCceEEEEecC---C--EEEEEcCCCCCCeEEEEeCC-CC--cEEEEeecC---CCceEEEEEEe
Q 023864 90 IYTIQVVNEFPHDPRAFTQGLLYAEN---D--TLFESTGLYGRSSVRRVALE-TG--KVEAINQME---GSYFGEGLTLL 158 (276)
Q Consensus 90 ~~t~~Vv~~~Phd~~aFTQGL~~~~d---g--~LyeStG~yg~S~I~~iDl~-tg--kv~~~~~l~---~~~FgEGit~~ 158 (276)
...|++.+.+.-|++.-..|.+|..= + ..+. |- |.++++.|.-. .| ++++...-+ +..|--.-+.+
T Consensus 24 k~~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfa-tv--G~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd 100 (385)
T KOG1034|consen 24 KRSYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFA-TV--GGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYD 100 (385)
T ss_pred ccceEeeeehhccCCCccceeeeehhcCCCCCceEE-Ee--CCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEec
Confidence 34778888887666555568888521 2 3554 33 66788877643 23 344444222 34442222221
Q ss_pred ---CCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCCCeeEE-----eeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEee
Q 023864 159 ---GEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGL-----ATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVR 229 (276)
Q Consensus 159 ---g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~EGWGL-----T~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~ 229 (276)
++-+-+++=.-|.+.|+|+.+.+..+.+. +.||.+ .|+.-.|++|- -+..|..+|-++..-+.-+ -+
T Consensus 101 ~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~---ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf-GG 176 (385)
T KOG1034|consen 101 SNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYR---GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF-GG 176 (385)
T ss_pred CCCCCeeEEeecceeEEEEEecchhhhcccee---ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe-cc
Confidence 35666777777889999999998888875 578885 56777788876 4678999998887654322 13
Q ss_pred eCCEeeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCC
Q 023864 230 YKGREVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQ 265 (276)
Q Consensus 230 ~~g~pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~ 265 (276)
..|+.-+-|- ..|. +|.-.|.+.++ ..|-+=+..
T Consensus 177 ~egHrdeVLS-vD~~~~gd~i~ScGmD-hslk~W~l~ 211 (385)
T KOG1034|consen 177 VEGHRDEVLS-VDFSLDGDRIASCGMD-HSLKLWRLN 211 (385)
T ss_pred cccccCcEEE-EEEcCCCCeeeccCCc-ceEEEEecC
Confidence 3454432221 1222 55656777766 655544443
No 472
>PLN02772 guanylate kinase
Probab=21.47 E-value=3.7e+02 Score=26.93 Aligned_cols=67 Identities=16% Similarity=0.189 Sum_probs=45.7
Q ss_pred EEEEEEeCCEEEEEEe------eCCEEEEEeCCCCcE-----EEEEecCCCCeeEEee-CCCEEEEEC-C---CceEEEE
Q 023864 152 GEGLTLLGEKLFQVTW------LQKTGFIYDQNNLNK-----LEEFTHQMKDGWGLAT-DGKVLFGSD-G---SSMLYQI 215 (276)
Q Consensus 152 gEGit~~g~~LyqlTw------k~~~v~V~D~~tlk~-----i~~~~~~~~EGWGLT~-Dg~~L~vSD-G---S~~L~vi 215 (276)
++.....++++|+.-- ..+.+++||+.|.+- +++.|-+ .+|...+. ++++|+|=. | .+.++|+
T Consensus 27 ~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~-r~GhSa~v~~~~rilv~~~~~~~~~~~w~l 105 (398)
T PLN02772 27 RETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKP-CKGYSAVVLNKDRILVIKKGSAPDDSIWFL 105 (398)
T ss_pred cceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCC-CCcceEEEECCceEEEEeCCCCCccceEEE
Confidence 4566777888887653 235789999998864 4566665 57777654 445555534 3 6789998
Q ss_pred cCCC
Q 023864 216 DPQT 219 (276)
Q Consensus 216 Dp~t 219 (276)
-..|
T Consensus 106 ~~~t 109 (398)
T PLN02772 106 EVDT 109 (398)
T ss_pred EcCC
Confidence 8776
Done!