BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>023865
MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLNYSALANKSLDSEGES
WNHRVVTRGKVNSKVNAVDFDAGSSDEENGNGNGEKEEYDWEKEMRRRVKEIEEMRELEK
KAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYG
KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN
IRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYDR

High Scoring Gene Products

Symbol, full name Information P value
AT3G26580 protein from Arabidopsis thaliana 3.6e-76

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  023865
        (276 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2088812 - symbol:AT3G26580 "AT3G26580" species...   545  3.6e-76   2


>TAIR|locus:2088812 [details] [associations]
            symbol:AT3G26580 "AT3G26580" species:3702 "Arabidopsis
            thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009535
            "chloroplast thylakoid membrane" evidence=IDA] [GO:0015996
            "chlorophyll catabolic process" evidence=RCA] InterPro:IPR011990
            InterPro:IPR013026 InterPro:IPR019734 PROSITE:PS50005
            PROSITE:PS50293 EMBL:CP002686 GenomeReviews:BA000014_GR
            Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 GO:GO:0009535
            EMBL:X98130 EMBL:AB028611 UniGene:At.83 EMBL:AY140071 EMBL:BT003411
            EMBL:AK227082 EMBL:X97485 IPI:IPI00544714 RefSeq:NP_189290.1
            ProteinModelPortal:Q38955 STRING:Q38955 PRIDE:Q38955
            EnsemblPlants:AT3G26580.1 GeneID:822266 KEGG:ath:AT3G26580
            TAIR:At3g26580 eggNOG:NOG285629 HOGENOM:HOG000130904
            InParanoid:Q38955 OMA:ANSRANA PhylomeDB:Q38955
            ProtClustDB:CLSN2684864 ArrayExpress:Q38955 Genevestigator:Q38955
            Uniprot:Q38955
        Length = 350

 Score = 545 (196.9 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
 Identities = 105/118 (88%), Positives = 111/118 (94%)

Query:   158 AKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYE 217
             A+EQAERR TA+LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT FGGEIQIWLAMAYE
Sbjct:   164 AQEQAERRKTAELMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTLFGGEIQIWLAMAYE 223

Query:   218 ANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYD 275
             ANNRHADCI LY+QLE  HPS  IRRQA++LRYILQAPKLKISQEEMVTIP+IGSSYD
Sbjct:   224 ANNRHADCIDLYQQLEKKHPSPGIRRQASELRYILQAPKLKISQEEMVTIPMIGSSYD 281

 Score = 241 (89.9 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
 Identities = 60/120 (50%), Positives = 77/120 (64%)

Query:     1 MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLN---YSALA-NKSLDS 56
             MA V+GN+ALLLDV S RT++TDR+ R   +DV+LNL KRD H +   Y+AL+ NK L+S
Sbjct:     1 MAAVIGNVALLLDVNSHRTVVTDRRIRLTVVDVVLNLQKRDSHSHVSHYAALSSNKPLES 60

Query:    57 EGESWNHRVVTRGKVNSKVNAVDFD-AGSSDXXXXXXXXXXXX-------YDWEKEMRRR 108
             +GE+   R +TRGK NS+ NAVDFD AGSSD                   +D EKE +RR
Sbjct:    61 DGEARVRRFLTRGKANSRANAVDFDDAGSSDEESSDGGGGGGDEEEEEEYFDVEKERKRR 120

 Score = 38 (18.4 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
 Identities = 6/15 (40%), Positives = 11/15 (73%)

Query:   236 HPSKNIRRQAADLRY 250
             H +K + R+A +L+Y
Sbjct:   125 HDTKELERKAEELQY 139


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.381    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      276       219   0.00092  112 3  11 22  0.38    33
                                                     32  0.39    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  170 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.00u 0.11s 15.11t   Elapsed:  00:00:01
  Total cpu time:  15.00u 0.11s 15.11t   Elapsed:  00:00:01
  Start:  Sat May 11 00:40:32 2013   End:  Sat May 11 00:40:33 2013

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