BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023865
(276 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P23231|TOM70_NEUCR Mitochondrial import receptor subunit tom-70 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=tom-70 PE=2 SV=2
Length = 624
Score = 38.1 bits (87), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 13/124 (10%)
Query: 105 MRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRR-------ELEKV 157
+R+ ++ E +L KK + +AE+ ++E + +TEE + + EL ++
Sbjct: 60 LRKGSEQKESGPKLSKKERRKRKQAEKGEAEKASTSKTEEAAPTQPKAAAVESADELPEI 119
Query: 158 AKEQA------ERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIW 211
+E ER+A A + ELG KAYG + +AI+ A+ P P ++
Sbjct: 120 DEESVVRLSEDERKAYAAKLKELGNKAYGSKDFNKAIDLYSKAIICKPDPVYYSNRAACH 179
Query: 212 LAMA 215
A+A
Sbjct: 180 NALA 183
>sp|Q8SX83|SPEN_DROME Protein split ends OS=Drosophila melanogaster GN=spen PE=1 SV=2
Length = 5560
Score = 35.8 bits (81), Expect = 0.38, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 102 EKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQ 161
EKE+R + +E RE + + +EL+ K + E ++ +E R + +RE E KEQ
Sbjct: 2002 EKEIREKDLREKEQRERDNREKELRDKDLREKEMREKEQREKELHREKDQREREHREKEQ 2061
Query: 162 AER 164
+ R
Sbjct: 2062 SRR 2064
Score = 35.8 bits (81), Expect = 0.39, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 95 EKEEYDWEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEET------EEEKRM 148
++E + EKE+R + +EMRE E++ +EL + ++ + E KE++ E+E R
Sbjct: 2015 QRERDNREKELRDKDLREKEMREKEQREKELHREKDQREREHREKEQSRRAMDVEQEGRG 2074
Query: 149 RVRRELEKVAKEQAE 163
REL K + +
Sbjct: 2075 GRMRELSSYQKSKMD 2089
Score = 32.0 bits (71), Expect = 4.4, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 87 EENGNGNGEKEEYDWEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEK 146
E+ N EKE D K++R + EMRE E++ +EL E+D E E +E+ + +
Sbjct: 2014 EQRERDNREKELRD--KDLREK-----EMREKEQREKELHR--EKDQREREHREKEQSRR 2064
Query: 147 RMRVRRE 153
M V +E
Sbjct: 2065 AMDVEQE 2071
>sp|A7EMM3|NST1_SCLS1 Stress response protein nst1 OS=Sclerotinia sclerotiorum (strain
ATCC 18683 / 1980 / Ss-1) GN=nst1 PE=3 SV=1
Length = 1171
Score = 34.7 bits (78), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Query: 115 MRELE-KKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRA 166
+RE+E KKAEE + K EE+ + EA+++ +EE+R+R E ++ +EQ ER+A
Sbjct: 597 LREIEEKKAEEQRLKREENRKKKEAQKKADEEERVRKEAEKQRRLQEQRERQA 649
>sp|Q28IV3|RPAP3_XENTR RNA polymerase II-associated protein 3 OS=Xenopus tropicalis
GN=rpap3 PE=2 SV=1
Length = 657
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 94 GEKEEYDWEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRE 153
G KE D+EK + V E EL K +ELQS S S+ +E+ E+++ V E
Sbjct: 218 GAKE--DYEKVLELDVNNFEAKNELRKINKELQS------STSDVQEKEAIEEKITVENE 269
Query: 154 LEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIE 189
EK E +R+ A + +LG + +G Y AI+
Sbjct: 270 EEKKQIEIQQRKQQAIMQKDLGNAYFKEGKYEIAID 305
>sp|Q8YEB3|IF2_BRUME Translation initiation factor IF-2 OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=infB PE=3 SV=2
Length = 959
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 8/72 (11%)
Query: 102 EKEMRRRVKEIEEMRELEKKA---EELQSKAEED-----DSESEAKEETEEEKRMRVRRE 153
E + RRR E ++RE+E++A EE + +AEED + E A+ + EEE R++ E
Sbjct: 155 EMDARRRALEEAQIREVEERARAVEEAKRRAEEDARRAKEHEESARRQAEEEARLKAEAE 214
Query: 154 LEKVAKEQAERR 165
+ A+E+A +R
Sbjct: 215 ARRKAEEEAAKR 226
>sp|Q8FXT2|IF2_BRUSU Translation initiation factor IF-2 OS=Brucella suis biovar 1
(strain 1330) GN=infB PE=3 SV=1
Length = 959
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 8/72 (11%)
Query: 102 EKEMRRRVKEIEEMRELEKKA---EELQSKAEED-----DSESEAKEETEEEKRMRVRRE 153
E + RRR E ++RE+E++A EE + +AEED + E A+ + EEE R++ E
Sbjct: 155 EMDARRRALEEAQIREVEERARAVEEAKRRAEEDARRAKEREESARRQAEEEARLKAEAE 214
Query: 154 LEKVAKEQAERR 165
+ A+E+A +R
Sbjct: 215 ARRKAEEEAAKR 226
>sp|A5VTB2|IF2_BRUO2 Translation initiation factor IF-2 OS=Brucella ovis (strain ATCC
25840 / 63/290 / NCTC 10512) GN=infB PE=3 SV=2
Length = 959
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 8/72 (11%)
Query: 102 EKEMRRRVKEIEEMRELEKKA---EELQSKAEED-----DSESEAKEETEEEKRMRVRRE 153
E + RRR E ++RE+E++A EE + +AEED + E A+ + EEE R++ E
Sbjct: 155 EMDARRRALEEAQIREVEERARAVEEAKRRAEEDARRAKEREESARRQAEEEARLKAEAE 214
Query: 154 LEKVAKEQAERR 165
+ A+E+A +R
Sbjct: 215 ARRKAEEEAAKR 226
>sp|B0CK11|IF2_BRUSI Translation initiation factor IF-2 OS=Brucella suis (strain ATCC
23445 / NCTC 10510) GN=infB PE=3 SV=1
Length = 959
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 8/72 (11%)
Query: 102 EKEMRRRVKEIEEMRELEKKA---EELQSKAEED-----DSESEAKEETEEEKRMRVRRE 153
E + RRR E ++RE+E++A EE + +AEED + E A+ + EEE R++ E
Sbjct: 155 EMDARRRALEEAQIREVEERARAVEEAKRRAEEDARRAKEREESARRQAEEEARLKAEAE 214
Query: 154 LEKVAKEQAERR 165
+ A+E+A +R
Sbjct: 215 ARRKAEEEAAKR 226
>sp|A9M9Z4|IF2_BRUC2 Translation initiation factor IF-2 OS=Brucella canis (strain ATCC
23365 / NCTC 10854) GN=infB PE=3 SV=1
Length = 959
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 8/72 (11%)
Query: 102 EKEMRRRVKEIEEMRELEKKA---EELQSKAEED-----DSESEAKEETEEEKRMRVRRE 153
E + RRR E ++RE+E++A EE + +AEED + E A+ + EEE R++ E
Sbjct: 155 EMDARRRALEEAQIREVEERARAVEEAKRRAEEDARRAKEREESARRQAEEEARLKAEAE 214
Query: 154 LEKVAKEQAERR 165
+ A+E+A +R
Sbjct: 215 ARRKAEEEAAKR 226
>sp|Q57AA0|IF2_BRUAB Translation initiation factor IF-2 OS=Brucella abortus biovar 1
(strain 9-941) GN=infB PE=3 SV=1
Length = 959
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 8/72 (11%)
Query: 102 EKEMRRRVKEIEEMRELEKKA---EELQSKAEED-----DSESEAKEETEEEKRMRVRRE 153
E + RRR E ++RE+E++A EE + +AEED + E A+ + EEE R++ E
Sbjct: 155 EMDARRRALEEAQIREVEERARAVEEAKRRAEEDARRAKEREESARRQAEEEARLKAEAE 214
Query: 154 LEKVAKEQAERR 165
+ A+E+A +R
Sbjct: 215 ARRKAEEEAAKR 226
>sp|Q2YQR7|IF2_BRUA2 Translation initiation factor IF-2 OS=Brucella abortus (strain
2308) GN=infB PE=3 SV=1
Length = 959
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 8/72 (11%)
Query: 102 EKEMRRRVKEIEEMRELEKKA---EELQSKAEED-----DSESEAKEETEEEKRMRVRRE 153
E + RRR E ++RE+E++A EE + +AEED + E A+ + EEE R++ E
Sbjct: 155 EMDARRRALEEAQIREVEERARAVEEAKRRAEEDARRAKEREESARRQAEEEARLKAEAE 214
Query: 154 LEKVAKEQAERR 165
+ A+E+A +R
Sbjct: 215 ARRKAEEEAAKR 226
>sp|A6RW62|NST1_BOTFB Stress response protein nst1 OS=Botryotinia fuckeliana (strain
B05.10) GN=nst1 PE=3 SV=1
Length = 1168
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 115 MRELE-KKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRA 166
+RE+E KKAE + K EE+ + EA+++ +EE+R+R E ++ +EQ ER+A
Sbjct: 545 LREIEEKKAEAQRLKREENRKKKEAQKKADEEERVRKESEKQRRLQEQRERQA 597
>sp|A6WWW5|IF2_OCHA4 Translation initiation factor IF-2 OS=Ochrobactrum anthropi (strain
ATCC 49188 / DSM 6882 / NCTC 12168) GN=infB PE=3 SV=1
Length = 964
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 8/72 (11%)
Query: 102 EKEMRRRVKEIEEMRELEKKA---EELQSKAEED-----DSESEAKEETEEEKRMRVRRE 153
E + RRR E ++RE+E++A EE + +AEED + E A+ + EEE R++ +
Sbjct: 157 EMDARRRALEEAQVREVEERARAVEEAKRRAEEDARRAKEREESARRQAEEEARLKAEAD 216
Query: 154 LEKVAKEQAERR 165
+ A+E+A +R
Sbjct: 217 ARRKAEEEAAKR 228
>sp|Q0WT31|PMTP_ARATH Probable methyltransferase PMT25 OS=Arabidopsis thaliana
GN=At2g34300 PE=1 SV=2
Length = 770
Score = 31.2 bits (69), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 85 SDEENGNGNGEKEEYDWEKEMRRRVKEI--EEMRELEKKAEELQSKAEEDDSE-SEAKEE 141
SD+ NG+G+GEKE + VKE+ E +K+ +L+ EE+ SE EE
Sbjct: 123 SDDNNGDGDGEKE---------KNVKEVGSESDETTQKEKTQLEESTEENKSEDGNGNEE 173
Query: 142 TEEEKRMRVRRELEKVAKE 160
EE EK +KE
Sbjct: 174 KAEENASETEESTEKSSKE 192
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,555,960
Number of Sequences: 539616
Number of extensions: 4488867
Number of successful extensions: 74740
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 2088
Number of HSP's that attempted gapping in prelim test: 42692
Number of HSP's gapped (non-prelim): 21078
length of query: 276
length of database: 191,569,459
effective HSP length: 116
effective length of query: 160
effective length of database: 128,974,003
effective search space: 20635840480
effective search space used: 20635840480
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)