Query 023865
Match_columns 276
No_of_seqs 102 out of 107
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 07:12:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023865.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023865hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13525 YfiO: Outer membrane 98.7 1E-07 2.2E-12 81.9 10.4 81 167-248 4-84 (203)
2 PF14559 TPR_19: Tetratricopep 98.7 4.7E-08 1E-12 68.4 6.2 57 178-238 1-57 (68)
3 PF13432 TPR_16: Tetratricopep 98.7 1.5E-07 3.4E-12 65.8 8.5 64 172-239 1-64 (65)
4 PF13512 TPR_18: Tetratricopep 98.5 9.5E-07 2E-11 75.6 9.7 80 168-248 10-89 (142)
5 TIGR02795 tol_pal_ybgF tol-pal 98.4 3.7E-06 8E-11 62.4 10.6 76 169-245 40-115 (119)
6 PRK10866 outer membrane biogen 98.4 2.1E-06 4.5E-11 77.0 10.0 83 167-250 31-113 (243)
7 PF13414 TPR_11: TPR repeat; P 98.4 9.4E-07 2E-11 62.2 5.9 67 167-237 2-69 (69)
8 TIGR02795 tol_pal_ybgF tol-pal 98.3 7E-06 1.5E-10 60.9 9.9 70 169-239 3-72 (119)
9 PRK10803 tol-pal system protei 98.3 6.8E-06 1.5E-10 75.1 11.4 82 169-251 181-262 (263)
10 PF09976 TPR_21: Tetratricopep 98.1 7.2E-05 1.6E-09 60.6 12.7 85 162-247 5-89 (145)
11 PF13371 TPR_9: Tetratricopept 98.1 2.7E-05 5.9E-10 55.1 8.8 70 176-249 3-72 (73)
12 TIGR03302 OM_YfiO outer membra 98.0 4.8E-05 1E-09 64.5 10.2 73 168-241 33-105 (235)
13 PRK15359 type III secretion sy 98.0 7E-05 1.5E-09 61.4 10.5 81 168-252 58-142 (144)
14 PRK10803 tol-pal system protei 98.0 6.3E-05 1.4E-09 68.8 10.6 78 169-247 143-221 (263)
15 TIGR02552 LcrH_SycD type III s 98.0 6.9E-05 1.5E-09 58.0 9.2 69 169-241 52-120 (135)
16 cd00189 TPR Tetratricopeptide 97.9 8.9E-05 1.9E-09 48.9 7.3 65 171-239 3-67 (100)
17 TIGR03302 OM_YfiO outer membra 97.9 0.00013 2.7E-09 61.9 9.8 67 171-238 169-235 (235)
18 PF13525 YfiO: Outer membrane 97.7 0.00023 4.9E-09 61.4 9.1 84 168-252 42-136 (203)
19 PRK15359 type III secretion sy 97.7 0.00017 3.6E-09 59.2 7.4 64 171-238 27-90 (144)
20 PLN03088 SGT1, suppressor of 97.7 0.00037 8E-09 65.4 10.5 82 168-253 36-118 (356)
21 TIGR02552 LcrH_SycD type III s 97.6 0.00031 6.6E-09 54.4 7.7 73 168-244 17-90 (135)
22 PF13424 TPR_12: Tetratricopep 97.6 0.00027 5.9E-09 50.9 6.9 67 167-233 4-73 (78)
23 PF12895 Apc3: Anaphase-promot 97.6 0.00018 3.8E-09 53.1 5.6 51 180-232 1-51 (84)
24 cd00189 TPR Tetratricopeptide 97.6 0.00051 1.1E-08 45.3 7.2 65 169-237 35-99 (100)
25 COG4105 ComL DNA uptake lipopr 97.5 0.0006 1.3E-08 63.6 9.9 80 168-248 34-113 (254)
26 PRK10866 outer membrane biogen 97.5 0.001 2.2E-08 59.8 11.0 83 169-252 70-170 (243)
27 PF13174 TPR_6: Tetratricopept 97.5 0.00012 2.7E-09 44.7 3.6 33 207-239 1-33 (33)
28 TIGR02521 type_IV_pilW type IV 97.5 0.0011 2.3E-08 52.6 9.0 61 169-233 66-126 (234)
29 PF12688 TPR_5: Tetratrico pep 97.4 0.0012 2.5E-08 54.5 9.3 78 170-248 3-80 (120)
30 PF03704 BTAD: Bacterial trans 97.4 0.0033 7.1E-08 50.3 11.4 73 173-249 67-146 (146)
31 PRK11788 tetratricopeptide rep 97.4 0.00068 1.5E-08 60.9 8.2 66 168-238 35-100 (389)
32 COG1729 Uncharacterized protei 97.4 0.00087 1.9E-08 62.7 9.0 66 171-237 144-209 (262)
33 PF09976 TPR_21: Tetratricopep 97.4 0.0028 6E-08 51.3 10.9 66 167-233 47-112 (145)
34 PLN03088 SGT1, suppressor of 97.3 0.002 4.4E-08 60.5 10.8 66 169-238 3-68 (356)
35 CHL00033 ycf3 photosystem I as 97.3 0.0018 4E-08 53.2 9.3 87 150-238 18-104 (168)
36 PRK02603 photosystem I assembl 97.3 0.0027 5.8E-08 52.7 9.8 74 165-239 32-105 (172)
37 TIGR02917 PEP_TPR_lipo putativ 97.3 0.0013 2.8E-08 62.5 8.8 68 168-239 22-89 (899)
38 COG3063 PilF Tfp pilus assembl 97.2 0.0017 3.8E-08 60.5 9.2 72 164-239 31-102 (250)
39 COG1729 Uncharacterized protei 97.2 0.0026 5.7E-08 59.5 9.9 82 168-250 178-259 (262)
40 PRK15363 pathogenicity island 97.2 0.0019 4.2E-08 56.3 8.4 75 175-253 76-154 (157)
41 PRK10370 formate-dependent nit 97.1 0.013 2.8E-07 50.9 13.1 69 168-240 107-178 (198)
42 TIGR02521 type_IV_pilW type IV 97.1 0.0091 2E-07 47.3 10.7 67 169-239 136-202 (234)
43 TIGR00990 3a0801s09 mitochondr 97.1 0.0042 9.1E-08 61.2 10.5 69 165-238 124-192 (615)
44 PF12895 Apc3: Anaphase-promot 97.0 0.0019 4.1E-08 47.7 5.7 58 169-231 26-83 (84)
45 PRK15363 pathogenicity island 97.0 0.0067 1.5E-07 53.0 9.5 79 166-248 33-112 (157)
46 PRK11189 lipoprotein NlpI; Pro 96.9 0.0051 1.1E-07 55.8 9.0 69 168-240 98-166 (296)
47 PRK11788 tetratricopeptide rep 96.8 0.0086 1.9E-07 53.8 9.6 70 169-241 215-284 (389)
48 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.01 2.2E-07 59.5 10.3 66 168-234 75-140 (453)
49 PF13428 TPR_14: Tetratricopep 96.8 0.0031 6.8E-08 42.3 4.7 34 207-240 2-35 (44)
50 TIGR03504 FimV_Cterm FimV C-te 96.7 0.0043 9.4E-08 43.7 5.3 43 209-252 2-44 (44)
51 PRK10370 formate-dependent nit 96.7 0.029 6.3E-07 48.8 11.2 68 168-239 73-143 (198)
52 TIGR00540 hemY_coli hemY prote 96.6 0.022 4.7E-07 53.8 11.1 70 167-240 83-152 (409)
53 PRK15179 Vi polysaccharide bio 96.6 0.013 2.7E-07 60.9 10.0 76 168-248 154-229 (694)
54 PRK15174 Vi polysaccharide exp 96.6 0.017 3.6E-07 58.6 10.5 67 169-239 285-351 (656)
55 TIGR00990 3a0801s09 mitochondr 96.6 0.01 2.2E-07 58.6 8.6 67 168-238 399-465 (615)
56 PRK09782 bacteriophage N4 rece 96.5 0.014 3E-07 62.7 10.1 72 165-240 41-112 (987)
57 PF13512 TPR_18: Tetratricopep 96.5 0.058 1.2E-06 46.5 11.8 79 168-247 47-140 (142)
58 PRK12370 invasion protein regu 96.5 0.012 2.7E-07 57.9 8.7 66 170-239 340-405 (553)
59 PRK10049 pgaA outer membrane p 96.5 0.019 4.1E-07 58.9 10.1 89 168-260 393-481 (765)
60 cd05804 StaR_like StaR_like; a 96.4 0.03 6.5E-07 49.9 10.0 69 169-237 149-217 (355)
61 KOG2376 Signal recognition par 96.4 0.011 2.3E-07 61.3 7.7 69 167-235 174-253 (652)
62 PRK11447 cellulose synthase su 96.3 0.041 8.9E-07 58.9 12.1 66 171-240 464-529 (1157)
63 PRK10747 putative protoheme IX 96.3 0.027 5.9E-07 53.2 9.7 61 168-233 328-388 (398)
64 PRK15174 Vi polysaccharide exp 96.3 0.017 3.6E-07 58.6 8.7 69 169-241 111-179 (656)
65 PRK14574 hmsH outer membrane p 96.3 0.023 4.9E-07 60.1 9.7 32 208-239 104-135 (822)
66 TIGR02917 PEP_TPR_lipo putativ 96.3 0.029 6.2E-07 53.5 9.5 64 171-238 162-225 (899)
67 PRK11189 lipoprotein NlpI; Pro 96.3 0.026 5.5E-07 51.3 8.8 69 168-240 64-132 (296)
68 KOG0553 TPR repeat-containing 96.3 0.045 9.7E-07 52.6 10.7 97 174-274 121-225 (304)
69 PRK11447 cellulose synthase su 96.2 0.031 6.7E-07 59.8 10.6 66 171-240 354-419 (1157)
70 TIGR00540 hemY_coli hemY prote 96.2 0.049 1.1E-06 51.5 10.7 55 175-233 160-214 (409)
71 PRK12370 invasion protein regu 96.2 0.052 1.1E-06 53.6 11.2 64 169-236 373-436 (553)
72 PRK15331 chaperone protein Sic 96.2 0.017 3.8E-07 50.9 7.1 89 166-254 35-153 (165)
73 PF07719 TPR_2: Tetratricopept 96.2 0.017 3.6E-07 35.4 5.0 32 169-200 2-33 (34)
74 PF13429 TPR_15: Tetratricopep 96.1 0.027 5.9E-07 49.5 8.0 78 171-252 183-261 (280)
75 PRK15179 Vi polysaccharide bio 96.0 0.023 5E-07 59.0 8.3 61 174-238 126-186 (694)
76 COG3629 DnrI DNA-binding trans 95.9 0.073 1.6E-06 50.3 10.4 62 169-234 154-215 (280)
77 PRK02603 photosystem I assembl 95.9 0.048 1E-06 45.2 8.3 67 168-238 72-152 (172)
78 PRK10049 pgaA outer membrane p 95.9 0.033 7.2E-07 57.1 8.8 65 171-239 362-426 (765)
79 PRK09782 bacteriophage N4 rece 95.8 0.053 1.1E-06 58.4 10.1 67 168-238 609-675 (987)
80 cd05804 StaR_like StaR_like; a 95.7 0.056 1.2E-06 48.2 8.4 63 171-237 117-179 (355)
81 COG5010 TadD Flp pilus assembl 95.7 0.035 7.7E-07 52.1 7.2 62 174-239 106-167 (257)
82 PRK14574 hmsH outer membrane p 95.7 0.056 1.2E-06 57.2 9.5 76 170-252 104-179 (822)
83 PRK10747 putative protoheme IX 95.6 0.23 4.9E-06 47.1 12.3 60 174-237 159-218 (398)
84 COG2956 Predicted N-acetylgluc 95.5 0.079 1.7E-06 52.2 9.2 84 145-233 158-241 (389)
85 PRK15331 chaperone protein Sic 95.4 0.052 1.1E-06 48.0 6.9 62 172-233 73-152 (165)
86 CHL00033 ycf3 photosystem I as 95.4 0.19 4E-06 41.4 9.6 59 168-230 72-137 (168)
87 PF09295 ChAPs: ChAPs (Chs5p-A 95.3 0.069 1.5E-06 52.3 7.9 62 168-233 234-295 (395)
88 PF07719 TPR_2: Tetratricopept 95.3 0.055 1.2E-06 33.1 4.8 32 207-238 2-33 (34)
89 PF12862 Apc5: Anaphase-promot 95.2 0.1 2.2E-06 40.3 7.3 77 176-252 6-90 (94)
90 PF12688 TPR_5: Tetratrico pep 95.2 0.2 4.4E-06 41.4 9.3 63 170-233 40-102 (120)
91 PRK10153 DNA-binding transcrip 95.2 0.097 2.1E-06 52.5 8.8 74 171-249 423-496 (517)
92 PF13429 TPR_15: Tetratricopep 95.1 0.059 1.3E-06 47.4 6.4 70 168-241 146-216 (280)
93 PF03704 BTAD: Bacterial trans 95.0 0.43 9.3E-06 38.1 10.5 74 167-240 5-96 (146)
94 KOG0543 FKBP-type peptidyl-pro 94.9 0.48 1E-05 47.1 12.6 66 170-239 259-324 (397)
95 PF00515 TPR_1: Tetratricopept 94.9 0.067 1.4E-06 33.3 4.4 31 169-199 2-32 (34)
96 PF08631 SPO22: Meiosis protei 94.5 0.65 1.4E-05 42.2 11.6 80 165-244 32-126 (278)
97 PF13174 TPR_6: Tetratricopept 94.5 0.079 1.7E-06 32.1 3.9 31 170-200 2-32 (33)
98 PF12569 NARP1: NMDA receptor- 94.4 0.17 3.8E-06 51.0 8.3 63 174-240 10-72 (517)
99 PF13428 TPR_14: Tetratricopep 94.4 0.099 2.1E-06 35.0 4.5 41 170-214 3-43 (44)
100 PF14938 SNAP: Soluble NSF att 94.3 0.22 4.7E-06 45.1 8.1 80 168-247 114-197 (282)
101 KOG0548 Molecular co-chaperone 94.2 0.49 1.1E-05 48.6 11.0 70 166-239 356-425 (539)
102 PF13431 TPR_17: Tetratricopep 93.9 0.06 1.3E-06 35.1 2.7 33 191-227 2-34 (34)
103 PF14938 SNAP: Soluble NSF att 93.7 0.14 3.1E-06 46.2 5.6 69 168-236 74-145 (282)
104 COG4700 Uncharacterized protei 93.6 0.78 1.7E-05 42.9 10.2 64 177-243 133-197 (251)
105 COG2956 Predicted N-acetylgluc 93.6 0.3 6.4E-06 48.3 7.9 71 168-241 214-284 (389)
106 PF14561 TPR_20: Tetratricopep 93.2 0.14 3.1E-06 40.2 4.2 52 168-221 22-73 (90)
107 PF13181 TPR_8: Tetratricopept 93.0 0.25 5.4E-06 30.4 4.4 31 169-199 2-32 (34)
108 KOG2076 RNA polymerase III tra 93.0 0.2 4.4E-06 53.9 6.3 61 172-238 453-513 (895)
109 PF13432 TPR_16: Tetratricopep 92.8 0.25 5.3E-06 34.3 4.6 29 210-238 1-29 (65)
110 COG3118 Thioredoxin domain-con 92.8 0.83 1.8E-05 44.1 9.4 75 149-233 121-195 (304)
111 PF11817 Foie-gras_1: Foie gra 92.7 1.3 2.8E-05 39.8 10.2 67 167-233 177-245 (247)
112 KOG2076 RNA polymerase III tra 92.5 0.46 1E-05 51.3 8.1 68 168-241 139-206 (895)
113 PF14863 Alkyl_sulf_dimr: Alky 92.4 0.37 8.1E-06 41.2 6.0 53 168-224 70-122 (141)
114 PF00515 TPR_1: Tetratricopept 92.1 0.5 1.1E-05 29.2 4.9 32 207-238 2-33 (34)
115 PF10579 Rapsyn_N: Rapsyn N-te 91.9 0.75 1.6E-05 36.7 6.7 63 166-229 4-66 (80)
116 smart00028 TPR Tetratricopepti 91.7 0.42 9.2E-06 26.0 3.9 30 208-237 3-32 (34)
117 COG4235 Cytochrome c biogenesi 91.6 1.8 3.8E-05 41.5 10.2 131 105-239 125-260 (287)
118 PF13176 TPR_7: Tetratricopept 91.5 0.33 7.2E-06 31.4 3.7 25 209-233 2-26 (36)
119 COG4783 Putative Zn-dependent 91.1 0.88 1.9E-05 46.4 7.9 59 175-237 347-405 (484)
120 KOG0548 Molecular co-chaperone 90.8 0.97 2.1E-05 46.6 8.0 71 171-241 5-105 (539)
121 COG3071 HemY Uncharacterized e 90.8 1.1 2.3E-05 44.9 8.0 63 166-233 326-388 (400)
122 PF07219 HemY_N: HemY protein 90.6 1.3 2.8E-05 35.5 7.0 56 162-221 53-108 (108)
123 KOG0550 Molecular chaperone (D 90.4 1 2.3E-05 45.7 7.7 66 168-233 249-314 (486)
124 COG4105 ComL DNA uptake lipopr 90.1 5.2 0.00011 37.8 11.6 88 166-257 165-252 (254)
125 KOG1127 TPR repeat-containing 90.0 1.9 4.2E-05 47.7 9.8 71 168-242 2-73 (1238)
126 KOG2002 TPR-containing nuclear 89.7 0.75 1.6E-05 50.3 6.4 55 178-233 280-334 (1018)
127 PF14853 Fis1_TPR_C: Fis1 C-te 89.6 1.9 4.2E-05 31.3 6.6 42 208-252 3-44 (53)
128 smart00028 TPR Tetratricopepti 89.5 0.74 1.6E-05 25.0 3.6 30 170-199 3-32 (34)
129 PF13181 TPR_8: Tetratricopept 89.0 0.99 2.1E-05 27.7 4.2 31 207-237 2-32 (34)
130 PF02064 MAS20: MAS20 protein 88.6 1.1 2.5E-05 37.7 5.6 39 165-203 60-98 (121)
131 KOG0543 FKBP-type peptidyl-pro 88.6 2.3 5E-05 42.5 8.4 78 163-241 203-291 (397)
132 KOG1840 Kinesin light chain [C 88.5 0.97 2.1E-05 46.0 6.0 59 174-232 247-309 (508)
133 PF13374 TPR_10: Tetratricopep 88.5 1 2.2E-05 28.2 4.1 27 207-233 3-29 (42)
134 PF07721 TPR_4: Tetratricopept 88.3 0.71 1.5E-05 28.2 3.1 24 207-230 2-25 (26)
135 PF09613 HrpB1_HrpK: Bacterial 87.6 7.5 0.00016 34.4 10.2 85 166-255 42-126 (160)
136 KOG0624 dsRNA-activated protei 87.5 1.7 3.7E-05 43.8 6.9 69 170-238 271-339 (504)
137 PRK04841 transcriptional regul 87.4 2.3 4.9E-05 43.4 7.9 65 172-236 695-761 (903)
138 PF09670 Cas_Cas02710: CRISPR- 87.3 5.6 0.00012 38.5 10.1 67 169-238 132-200 (379)
139 PF13374 TPR_10: Tetratricopep 87.0 1.8 3.9E-05 27.0 4.6 32 168-199 2-33 (42)
140 PF06552 TOM20_plant: Plant sp 86.9 3.8 8.2E-05 37.2 8.1 64 182-249 49-123 (186)
141 PF04733 Coatomer_E: Coatomer 86.7 2.8 6E-05 39.0 7.5 75 167-245 200-276 (290)
142 PF13176 TPR_7: Tetratricopept 86.7 1.6 3.4E-05 28.2 4.2 27 171-197 2-28 (36)
143 COG4700 Uncharacterized protei 86.3 8.5 0.00018 36.2 10.3 91 146-239 62-157 (251)
144 COG0457 NrfG FOG: TPR repeat [ 86.3 9.9 0.00021 27.6 8.6 62 168-233 95-157 (291)
145 KOG2002 TPR-containing nuclear 85.7 2.5 5.5E-05 46.4 7.4 72 166-240 305-376 (1018)
146 PRK04841 transcriptional regul 85.6 7.4 0.00016 39.8 10.4 64 170-233 533-600 (903)
147 KOG0547 Translocase of outer m 85.6 1.6 3.5E-05 45.2 5.7 67 168-238 394-460 (606)
148 TIGR02561 HrpB1_HrpK type III 85.5 7.9 0.00017 34.3 9.2 85 168-257 44-128 (153)
149 KOG0547 Translocase of outer m 85.4 2.9 6.3E-05 43.5 7.4 66 168-237 115-180 (606)
150 COG3071 HemY Uncharacterized e 85.0 26 0.00057 35.3 13.5 62 171-236 156-217 (400)
151 KOG0624 dsRNA-activated protei 84.6 12 0.00026 38.0 11.1 113 100-233 104-216 (504)
152 KOG4234 TPR repeat-containing 84.4 17 0.00036 34.6 11.3 75 171-252 137-211 (271)
153 PRK11619 lytic murein transgly 84.3 8.2 0.00018 40.2 10.2 69 175-249 319-387 (644)
154 PF13371 TPR_9: Tetratricopept 83.9 2.7 5.8E-05 29.4 4.7 34 167-200 28-61 (73)
155 PF04184 ST7: ST7 protein; In 83.9 4.9 0.00011 41.6 8.2 80 168-249 223-305 (539)
156 KOG3364 Membrane protein invol 83.9 4.1 8.8E-05 36.0 6.7 77 167-249 31-111 (149)
157 PF13414 TPR_11: TPR repeat; P 83.4 2.4 5.2E-05 29.5 4.2 33 167-199 36-69 (69)
158 KOG4234 TPR repeat-containing 83.3 14 0.0003 35.2 10.3 71 166-237 93-165 (271)
159 PF14561 TPR_20: Tetratricopep 83.2 13 0.00028 29.2 8.7 49 187-239 7-55 (90)
160 COG0457 NrfG FOG: TPR repeat [ 83.1 15 0.00033 26.6 8.6 58 178-238 177-234 (291)
161 PF09295 ChAPs: ChAPs (Chs5p-A 82.8 9.1 0.0002 37.8 9.4 71 171-246 203-273 (395)
162 PF10345 Cohesin_load: Cohesin 82.4 22 0.00047 36.1 12.1 94 166-259 359-466 (608)
163 PRK15490 Vi polysaccharide bio 82.3 7.4 0.00016 40.6 8.9 65 180-248 20-84 (578)
164 PF09797 NatB_MDM20: N-acetylt 82.1 2.4 5.1E-05 39.9 4.9 49 181-233 196-244 (365)
165 KOG2003 TPR repeat-containing 81.7 2.8 6E-05 43.7 5.6 56 179-238 637-692 (840)
166 KOG1126 DNA-binding cell divis 81.2 2.7 5.8E-05 44.3 5.3 60 170-233 491-550 (638)
167 PF14559 TPR_19: Tetratricopep 81.1 2.2 4.8E-05 29.5 3.3 34 168-201 25-58 (68)
168 KOG4626 O-linked N-acetylgluco 80.7 5.6 0.00012 42.9 7.4 66 168-237 354-419 (966)
169 KOG1840 Kinesin light chain [C 80.5 5 0.00011 41.0 6.9 61 173-233 204-268 (508)
170 PF12569 NARP1: NMDA receptor- 79.9 20 0.00043 36.6 10.9 60 170-233 196-255 (517)
171 PF09986 DUF2225: Uncharacteri 79.5 11 0.00023 34.0 7.9 73 177-250 134-212 (214)
172 PRK14720 transcript cleavage f 78.6 5.8 0.00013 43.3 7.0 67 168-236 65-146 (906)
173 PF10607 CLTH: CTLH/CRA C-term 78.3 26 0.00055 28.3 9.2 79 173-252 6-85 (145)
174 PLN02789 farnesyltranstransfer 78.1 11 0.00024 35.7 8.0 55 181-239 50-105 (320)
175 KOG2003 TPR repeat-containing 77.7 4.6 0.0001 42.2 5.7 90 171-266 493-583 (840)
176 PF13424 TPR_12: Tetratricopep 77.5 4.9 0.00011 28.6 4.3 33 166-198 44-76 (78)
177 COG2976 Uncharacterized protei 76.9 7.7 0.00017 35.9 6.3 64 169-233 90-153 (207)
178 PF06248 Zw10: Centromere/kine 76.9 68 0.0015 32.6 13.6 86 112-200 52-140 (593)
179 PF03745 DUF309: Domain of unk 76.8 12 0.00025 27.9 6.2 59 171-229 2-62 (62)
180 PF11207 DUF2989: Protein of u 76.1 11 0.00024 34.6 7.1 55 172-226 143-198 (203)
181 COG4783 Putative Zn-dependent 75.5 50 0.0011 34.1 12.2 114 115-239 253-373 (484)
182 PF02259 FAT: FAT domain; Int 75.3 21 0.00046 31.8 8.6 71 164-234 142-212 (352)
183 KOG3785 Uncharacterized conser 75.1 6.3 0.00014 40.1 5.7 54 177-233 31-84 (557)
184 PF04733 Coatomer_E: Coatomer 74.8 5.4 0.00012 37.2 4.9 69 173-246 6-74 (290)
185 KOG4626 O-linked N-acetylgluco 74.0 8.7 0.00019 41.5 6.6 61 174-238 122-182 (966)
186 PF09477 Type_III_YscG: Bacter 73.5 16 0.00035 31.2 7.0 67 175-251 47-113 (116)
187 PF09613 HrpB1_HrpK: Bacterial 73.5 57 0.0012 29.0 10.6 67 167-237 9-75 (160)
188 TIGR00756 PPR pentatricopeptid 72.8 6.4 0.00014 23.2 3.4 24 210-233 4-27 (35)
189 PLN02789 farnesyltranstransfer 72.7 28 0.00061 33.0 9.2 62 174-239 112-175 (320)
190 PF05168 HEPN: HEPN domain; I 72.0 40 0.00086 25.3 8.4 33 164-196 4-36 (118)
191 PF01535 PPR: PPR repeat; Int 71.9 6.6 0.00014 23.1 3.2 25 209-233 3-27 (31)
192 KOG1173 Anaphase-promoting com 71.6 9 0.00019 40.3 6.0 64 172-239 459-522 (611)
193 PF12854 PPR_1: PPR repeat 71.0 5.7 0.00012 25.7 3.0 25 208-232 9-33 (34)
194 PF13281 DUF4071: Domain of un 70.7 76 0.0016 31.5 11.9 57 177-233 150-210 (374)
195 TIGR02508 type_III_yscG type I 70.1 17 0.00037 31.0 6.3 67 176-252 47-113 (115)
196 PLN03218 maturation of RBCL 1; 70.0 16 0.00035 40.3 7.8 53 179-234 660-712 (1060)
197 KOG1125 TPR repeat-containing 69.9 17 0.00037 38.1 7.5 79 170-252 287-379 (579)
198 PF14853 Fis1_TPR_C: Fis1 C-te 69.2 11 0.00023 27.5 4.4 33 171-203 4-36 (53)
199 KOG1126 DNA-binding cell divis 68.5 15 0.00032 38.9 6.9 63 174-240 529-591 (638)
200 PF14346 DUF4398: Domain of un 68.3 12 0.00027 29.3 4.9 34 163-196 40-73 (103)
201 COG3118 Thioredoxin domain-con 68.0 80 0.0017 30.9 11.2 73 179-254 198-284 (304)
202 PLN03218 maturation of RBCL 1; 67.9 22 0.00047 39.3 8.2 53 180-233 554-606 (1060)
203 KOG1173 Anaphase-promoting com 67.6 16 0.00035 38.4 6.9 62 172-237 316-377 (611)
204 KOG3060 Uncharacterized conser 67.2 34 0.00074 33.2 8.4 71 168-242 52-122 (289)
205 PLN03077 Protein ECB2; Provisi 67.1 50 0.0011 34.4 10.3 25 208-232 627-651 (857)
206 KOG4555 TPR repeat-containing 65.8 59 0.0013 29.3 9.1 49 175-227 50-98 (175)
207 PF11817 Foie-gras_1: Foie gra 65.8 15 0.00032 33.1 5.6 51 185-235 155-207 (247)
208 TIGR03362 VI_chp_7 type VI sec 65.2 12 0.00027 35.6 5.1 81 170-252 215-296 (301)
209 PF10300 DUF3808: Protein of u 64.2 20 0.00043 35.7 6.5 65 169-233 268-332 (468)
210 COG4235 Cytochrome c biogenesi 64.2 21 0.00045 34.4 6.4 50 168-217 227-276 (287)
211 KOG1308 Hsp70-interacting prot 63.3 6.6 0.00014 39.1 3.0 78 172-253 118-199 (377)
212 KOG2053 Mitochondrial inherita 62.9 37 0.00081 37.5 8.7 62 175-240 50-111 (932)
213 PF07543 PGA2: Protein traffic 62.8 22 0.00047 30.7 5.8 29 98-128 97-125 (140)
214 PF13041 PPR_2: PPR repeat fam 62.8 17 0.00037 24.4 4.2 34 208-241 5-38 (50)
215 COG2976 Uncharacterized protei 62.3 1.2E+02 0.0026 28.3 10.7 82 162-245 47-128 (207)
216 PLN03081 pentatricopeptide (PP 61.5 35 0.00075 34.7 7.8 51 180-234 506-556 (697)
217 PF07721 TPR_4: Tetratricopept 61.3 14 0.00031 22.4 3.2 23 170-192 3-25 (26)
218 COG2015 Alkyl sulfatase and re 60.8 15 0.00032 38.6 5.0 57 168-228 452-508 (655)
219 PF13628 DUF4142: Domain of un 60.4 13 0.00027 30.4 3.8 35 219-253 95-130 (139)
220 COG3947 Response regulator con 60.3 44 0.00096 33.2 8.0 62 168-233 279-340 (361)
221 PF12487 DUF3703: Protein of u 60.3 83 0.0018 26.6 8.6 62 165-226 6-67 (112)
222 PF10516 SHNi-TPR: SHNi-TPR; 60.0 15 0.00032 25.2 3.4 28 170-197 3-30 (38)
223 KOG4814 Uncharacterized conser 59.3 96 0.0021 33.9 10.7 67 170-237 356-424 (872)
224 KOG1156 N-terminal acetyltrans 59.1 33 0.00071 36.8 7.3 74 162-239 179-252 (700)
225 KOG4056 Translocase of outer m 58.9 46 0.00099 29.4 7.1 35 167-201 80-114 (143)
226 COG5010 TadD Flp pilus assembl 58.7 91 0.002 29.8 9.5 76 154-233 152-229 (257)
227 COG3096 MukB Uncharacterized p 58.6 2.1E+02 0.0045 32.3 13.1 70 183-252 415-505 (1480)
228 PLN03081 pentatricopeptide (PP 57.9 28 0.00061 35.3 6.5 48 180-234 372-419 (697)
229 TIGR00985 3a0801s04tom mitocho 57.8 1.3E+02 0.0027 26.5 9.6 39 166-204 88-127 (148)
230 KOG3807 Predicted membrane pro 57.6 96 0.0021 31.8 9.9 90 158-248 225-317 (556)
231 PF13646 HEAT_2: HEAT repeats; 57.4 56 0.0012 23.4 6.4 69 174-249 19-87 (88)
232 PF06957 COPI_C: Coatomer (COP 57.2 40 0.00086 34.1 7.3 89 164-253 200-347 (422)
233 PRK11906 transcriptional regul 56.8 82 0.0018 32.3 9.5 67 168-239 338-405 (458)
234 TIGR02498 type_III_ssaH type I 56.7 54 0.0012 26.4 6.6 60 168-231 6-65 (79)
235 PLN03077 Protein ECB2; Provisi 56.1 52 0.0011 34.3 8.2 60 172-235 557-618 (857)
236 TIGR02561 HrpB1_HrpK type III 55.6 1.5E+02 0.0033 26.4 10.4 84 168-255 10-94 (153)
237 PF10952 DUF2753: Protein of u 54.9 1.4E+02 0.003 26.4 9.2 75 173-247 6-124 (140)
238 KOG1155 Anaphase-promoting com 54.9 24 0.00052 36.8 5.4 48 187-239 417-464 (559)
239 PF04781 DUF627: Protein of un 54.4 80 0.0017 26.6 7.6 30 174-203 2-31 (111)
240 COG3063 PilF Tfp pilus assembl 54.3 44 0.00095 31.9 6.7 56 173-232 144-199 (250)
241 PF13812 PPR_3: Pentatricopept 54.1 36 0.00079 20.3 4.2 26 208-233 3-28 (34)
242 KOG4403 Cell surface glycoprot 54.0 1.2E+02 0.0026 31.6 10.1 30 105-134 244-273 (575)
243 PRK04778 septation ring format 53.8 38 0.00083 34.5 6.7 38 166-203 517-554 (569)
244 KOG1125 TPR repeat-containing 53.6 40 0.00087 35.5 6.8 66 168-238 319-385 (579)
245 PF10304 DUF2411: Domain of un 53.5 40 0.00087 22.8 4.7 29 226-254 7-35 (36)
246 cd08977 SusD starch binding ou 53.4 44 0.00095 30.9 6.5 52 183-234 140-209 (359)
247 KOG3060 Uncharacterized conser 52.6 36 0.00078 33.0 5.9 58 180-237 98-185 (289)
248 KOG1155 Anaphase-promoting com 51.8 77 0.0017 33.2 8.4 77 171-250 469-548 (559)
249 KOG0495 HAT repeat protein [RN 51.4 68 0.0015 35.1 8.2 93 168-264 651-754 (913)
250 PRK09591 celC cellobiose phosp 50.8 77 0.0017 26.0 6.8 59 154-216 6-64 (104)
251 KOG1144 Translation initiation 50.6 88 0.0019 34.8 8.9 55 103-161 210-264 (1064)
252 PF01093 Clusterin: Clusterin; 49.9 1.9E+02 0.0041 29.6 10.7 81 100-195 13-93 (436)
253 KOG2376 Signal recognition par 49.7 65 0.0014 34.4 7.7 63 172-242 83-145 (652)
254 PF02985 HEAT: HEAT repeat; I 48.9 37 0.00081 21.2 3.8 24 228-252 4-27 (31)
255 PF06160 EzrA: Septation ring 48.8 1.1E+02 0.0024 31.3 9.0 37 167-203 514-551 (560)
256 KOG4648 Uncharacterized conser 48.6 57 0.0012 33.4 6.8 31 171-201 100-130 (536)
257 COG4649 Uncharacterized protei 48.4 1.7E+02 0.0037 27.4 9.3 80 171-253 135-215 (221)
258 PRK13184 pknD serine/threonine 48.3 50 0.0011 36.4 6.8 84 150-238 486-584 (932)
259 KOG3785 Uncharacterized conser 48.3 1.9E+02 0.0041 30.0 10.3 76 168-247 151-226 (557)
260 cd02679 MIT_spastin MIT: domai 47.5 29 0.00062 27.4 3.7 29 168-196 8-36 (79)
261 KOG1129 TPR repeat-containing 46.6 55 0.0012 33.3 6.3 61 173-238 228-288 (478)
262 PF13646 HEAT_2: HEAT repeats; 46.4 1E+02 0.0023 22.0 6.3 47 207-255 15-61 (88)
263 TIGR00823 EIIA-LAC phosphotran 46.4 1.2E+02 0.0027 24.6 7.3 60 154-217 3-62 (99)
264 KOG1174 Anaphase-promoting com 46.2 46 0.00099 34.6 5.8 37 167-203 299-335 (564)
265 PLN03098 LPA1 LOW PSII ACCUMUL 45.9 63 0.0014 33.1 6.7 38 203-240 72-109 (453)
266 PRK10941 hypothetical protein; 45.8 1.7E+02 0.0036 27.6 9.1 73 178-254 191-263 (269)
267 KOG1128 Uncharacterized conser 44.8 51 0.0011 35.8 6.1 65 168-237 519-583 (777)
268 PF11846 DUF3366: Domain of un 44.5 1.7E+02 0.0036 25.0 8.2 57 184-245 127-183 (193)
269 PF10255 Paf67: RNA polymerase 43.7 41 0.00088 33.7 5.0 53 180-233 134-191 (404)
270 KOG1130 Predicted G-alpha GTPa 43.6 54 0.0012 34.3 5.9 72 159-230 266-339 (639)
271 KOG1586 Protein required for f 43.1 51 0.0011 31.9 5.3 65 182-246 128-194 (288)
272 smart00748 HEPN Higher Eukaryt 43.0 35 0.00075 26.7 3.6 30 166-195 2-31 (113)
273 PF04782 DUF632: Protein of un 42.6 3.3E+02 0.0071 26.5 12.3 34 99-132 91-125 (312)
274 KOG1586 Protein required for f 42.1 1.1E+02 0.0024 29.8 7.3 76 168-243 73-151 (288)
275 PRK09687 putative lyase; Provi 41.8 1.2E+02 0.0026 28.2 7.5 76 173-254 41-120 (280)
276 PF12862 Apc5: Anaphase-promot 41.7 71 0.0015 24.5 5.1 39 168-206 41-79 (94)
277 KOG1070 rRNA processing protei 41.6 2.3E+02 0.0049 33.6 10.6 102 142-252 1472-1575(1710)
278 PF12968 DUF3856: Domain of Un 41.5 76 0.0017 28.0 5.7 54 178-232 65-126 (144)
279 PRK14720 transcript cleavage f 41.1 95 0.0021 34.4 7.6 64 170-239 33-96 (906)
280 COG4649 Uncharacterized protei 40.7 2.4E+02 0.0051 26.6 9.0 76 171-248 61-136 (221)
281 smart00509 TFS2N Domain in the 40.5 34 0.00073 26.2 3.1 54 183-253 17-70 (75)
282 PF10345 Cohesin_load: Cohesin 40.1 1.9E+02 0.004 29.6 9.1 70 168-238 59-131 (608)
283 KOG2460 Signal recognition par 39.9 91 0.002 33.0 6.9 65 184-257 387-464 (593)
284 PF09450 DUF2019: Domain of un 39.4 20 0.00043 30.0 1.8 55 177-249 17-71 (106)
285 KOG4340 Uncharacterized conser 39.2 54 0.0012 33.1 5.0 63 167-233 143-205 (459)
286 KOG4031 Vesicle coat protein c 39.1 3.4E+02 0.0073 25.6 10.2 28 140-167 127-154 (216)
287 COG0790 FOG: TPR repeat, SEL1 39.0 2.8E+02 0.006 24.6 11.7 56 183-246 206-276 (292)
288 PRK15356 type III secretion sy 37.8 63 0.0014 25.8 4.2 63 182-256 8-70 (75)
289 PF04910 Tcf25: Transcriptiona 37.7 1.8E+02 0.0039 28.2 8.2 104 168-271 40-181 (360)
290 KOG1130 Predicted G-alpha GTPa 37.3 66 0.0014 33.7 5.4 60 168-227 17-76 (639)
291 KOG4555 TPR repeat-containing 37.1 3.2E+02 0.007 24.8 11.1 71 173-244 82-152 (175)
292 PRK10780 periplasmic chaperone 37.0 2.7E+02 0.0058 23.8 11.4 29 100-128 47-76 (165)
293 PRK11906 transcriptional regul 36.8 96 0.0021 31.9 6.4 68 168-238 372-439 (458)
294 KOG1839 Uncharacterized protei 36.5 45 0.00098 38.0 4.4 65 166-231 930-998 (1236)
295 KOG1156 N-terminal acetyltrans 36.0 3.2E+02 0.0069 29.7 10.2 115 117-254 338-452 (700)
296 PHA02537 M terminase endonucle 35.8 2.9E+02 0.0064 25.8 8.9 84 168-253 129-225 (230)
297 TIGR02710 CRISPR-associated pr 35.7 1.1E+02 0.0024 30.5 6.5 61 171-231 133-196 (380)
298 cd00280 TRFH Telomeric Repeat 35.6 1.6E+02 0.0035 27.4 7.1 65 186-253 87-155 (200)
299 PF07720 TPR_3: Tetratricopept 35.5 1.2E+02 0.0025 20.4 4.7 16 175-190 8-23 (36)
300 PRK09687 putative lyase; Provi 34.9 2.4E+02 0.0052 26.3 8.3 59 185-250 158-217 (280)
301 PF10602 RPN7: 26S proteasome 34.8 3E+02 0.0066 23.8 10.9 63 166-231 34-98 (177)
302 KOG4162 Predicted calmodulin-b 34.8 1.5E+02 0.0033 32.6 7.7 54 175-232 725-780 (799)
303 cd00183 TFIIS_I N-terminal dom 34.6 48 0.001 25.2 3.1 24 229-253 49-72 (76)
304 KOG2300 Uncharacterized conser 34.5 2.7E+02 0.0058 29.7 9.2 85 168-252 445-534 (629)
305 cd02678 MIT_VPS4 MIT: domain c 34.5 93 0.002 23.3 4.6 31 166-196 4-34 (75)
306 KOG0163 Myosin class VI heavy 34.3 1.9E+02 0.0041 32.5 8.3 12 110-121 927-938 (1259)
307 PRK10454 PTS system N,N'-diace 34.3 2.7E+02 0.0058 23.5 7.7 62 152-217 15-76 (115)
308 PF00610 DEP: Domain found in 34.1 38 0.00083 24.6 2.4 33 201-233 16-49 (74)
309 PF12761 End3: Actin cytoskele 34.0 1.6E+02 0.0034 27.2 6.8 26 100-131 95-121 (195)
310 KOG3081 Vesicle coat complex C 33.8 3.6E+02 0.0079 26.5 9.4 52 180-235 185-236 (299)
311 PF07079 DUF1347: Protein of u 33.8 1.8E+02 0.0039 30.6 7.8 61 168-233 462-522 (549)
312 PF02259 FAT: FAT domain; Int 33.7 2.6E+02 0.0057 24.9 8.1 86 168-253 184-307 (352)
313 PF10602 RPN7: 26S proteasome 33.7 3.2E+02 0.0069 23.7 13.2 71 168-238 73-145 (177)
314 TIGR01716 RGG_Cterm transcript 33.6 2.2E+02 0.0048 24.3 7.3 66 166-231 126-193 (220)
315 smart00386 HAT HAT (Half-A-TPR 32.9 1E+02 0.0022 17.7 3.9 16 183-198 2-17 (33)
316 KOG2607 CDK5 activator-binding 32.8 1.6E+02 0.0035 30.6 7.2 133 105-265 127-260 (505)
317 PF08424 NRDE-2: NRDE-2, neces 32.8 2.5E+02 0.0053 26.4 8.1 64 184-252 47-110 (321)
318 TIGR03504 FimV_Cterm FimV C-te 32.1 1E+02 0.0022 21.7 4.2 26 171-196 2-27 (44)
319 PF08312 cwf21: cwf21 domain; 32.1 1.3E+02 0.0028 21.6 4.7 39 114-156 5-43 (46)
320 PF10366 Vps39_1: Vacuolar sor 31.7 64 0.0014 26.2 3.6 25 209-233 42-66 (108)
321 PF12348 CLASP_N: CLASP N term 31.6 2E+02 0.0043 24.6 6.8 45 207-252 150-204 (228)
322 PF13206 VSG_B: Trypanosomal V 31.5 1.2E+02 0.0027 27.7 5.8 33 98-130 317-349 (351)
323 PF02064 MAS20: MAS20 protein 31.2 1.2E+02 0.0025 25.7 5.1 38 209-253 66-104 (121)
324 KOG2891 Surface glycoprotein [ 31.0 1.6E+02 0.0035 29.3 6.7 28 103-130 321-348 (445)
325 PF04910 Tcf25: Transcriptiona 30.9 2.9E+02 0.0064 26.8 8.4 43 164-206 99-141 (360)
326 PRK10153 DNA-binding transcrip 30.6 1.3E+02 0.0027 30.7 6.2 47 168-218 339-388 (517)
327 KOG4162 Predicted calmodulin-b 30.6 1.2E+02 0.0027 33.2 6.3 56 185-244 461-516 (799)
328 PF07720 TPR_3: Tetratricopept 30.5 1.2E+02 0.0027 20.3 4.2 27 207-233 2-30 (36)
329 KOG2264 Exostosin EXT1L [Signa 30.2 1.6E+02 0.0036 31.9 7.0 22 112-133 92-113 (907)
330 KOG1174 Anaphase-promoting com 29.8 6.9E+02 0.015 26.4 11.8 75 171-250 441-515 (564)
331 PF05843 Suf: Suppressor of fo 29.7 1.9E+02 0.0042 26.5 6.7 57 181-238 83-139 (280)
332 PF08631 SPO22: Meiosis protei 29.3 78 0.0017 28.8 4.1 28 169-196 247-274 (278)
333 PF04212 MIT: MIT (microtubule 28.9 1.1E+02 0.0024 22.2 4.1 20 212-231 11-30 (69)
334 KOG2758 Translation initiation 28.4 6.6E+02 0.014 25.7 11.2 39 166-204 127-165 (432)
335 PF05957 DUF883: Bacterial pro 27.9 2.9E+02 0.0062 21.4 8.6 83 113-214 5-87 (94)
336 PF12870 Lumazine_bd: Lumazine 27.8 49 0.0011 24.5 2.1 28 167-194 8-35 (111)
337 PF05942 PaREP1: Archaeal PaRE 27.7 1E+02 0.0022 24.8 4.1 33 164-196 2-34 (115)
338 KOG2475 CDC45 (cell division c 27.4 2.4E+02 0.0052 30.0 7.5 66 144-214 168-236 (587)
339 cd00215 PTS_IIA_lac PTS_IIA, P 27.0 1.6E+02 0.0036 23.8 5.1 48 166-217 13-60 (97)
340 PF04184 ST7: ST7 protein; In 26.9 2.5E+02 0.0053 29.7 7.5 58 171-230 262-319 (539)
341 cd02682 MIT_AAA_Arch MIT: doma 26.9 1.1E+02 0.0023 24.1 3.9 34 210-243 10-50 (75)
342 PF13080 DUF3926: Protein of u 26.7 45 0.00098 24.2 1.6 18 235-253 6-23 (44)
343 KOG4552 Vitamin-D-receptor int 26.6 3.3E+02 0.0072 26.1 7.7 26 140-165 79-104 (272)
344 KOG1029 Endocytic adaptor prot 26.6 3.8E+02 0.0083 30.2 9.0 15 65-79 279-293 (1118)
345 KOG1464 COP9 signalosome, subu 26.5 1.5E+02 0.0032 29.8 5.6 61 177-238 36-96 (440)
346 PF06518 DUF1104: Protein of u 26.4 3E+02 0.0065 22.4 6.5 63 91-159 16-81 (93)
347 PF03713 DUF305: Domain of unk 26.3 89 0.0019 25.8 3.6 28 222-249 12-39 (151)
348 KOG0163 Myosin class VI heavy 26.2 4.1E+02 0.0089 30.0 9.2 7 265-271 1152-1158(1259)
349 KOG2053 Mitochondrial inherita 25.9 1.6E+02 0.0035 32.8 6.3 70 165-238 6-75 (932)
350 PRK14154 heat shock protein Gr 25.5 4.2E+02 0.0092 24.5 8.1 13 82-94 27-39 (208)
351 KOG1310 WD40 repeat protein [G 25.4 1.5E+02 0.0033 31.9 5.7 41 205-246 444-484 (758)
352 KOG4196 bZIP transcription fac 25.3 4.4E+02 0.0095 23.3 7.6 22 108-129 69-90 (135)
353 PRK00068 hypothetical protein; 25.3 1.3E+02 0.0029 33.5 5.6 34 165-198 930-966 (970)
354 KOG2180 Late Golgi protein sor 25.2 6.3E+02 0.014 28.0 10.2 84 114-199 80-163 (793)
355 PF04348 LppC: LppC putative l 25.2 24 0.00051 35.9 0.0 67 165-232 21-87 (536)
356 TIGR03362 VI_chp_7 type VI sec 25.2 3.3E+02 0.0071 26.1 7.6 70 174-247 105-191 (301)
357 cd02682 MIT_AAA_Arch MIT: doma 25.1 2.3E+02 0.0051 22.2 5.5 29 168-196 6-34 (75)
358 PF10300 DUF3808: Protein of u 25.1 1.8E+02 0.0038 29.1 6.0 63 168-233 305-374 (468)
359 smart00745 MIT Microtubule Int 24.9 1.8E+02 0.0039 21.3 4.7 26 171-196 11-36 (77)
360 PF07340 Herpes_IE1: Cytomegal 24.9 7.6E+02 0.016 25.3 10.3 96 143-254 164-260 (392)
361 PF04212 MIT: MIT (microtubule 24.8 2.7E+02 0.0059 20.1 10.2 30 167-196 4-33 (69)
362 PF11446 DUF2897: Protein of u 24.8 16 0.00035 27.2 -0.9 15 2-16 14-28 (55)
363 PF02184 HAT: HAT (Half-A-TPR) 24.8 79 0.0017 21.4 2.4 25 221-247 2-26 (32)
364 PRK12323 DNA polymerase III su 24.8 5.4E+02 0.012 28.1 9.7 72 176-250 211-292 (700)
365 KOG2072 Translation initiation 24.7 9.5E+02 0.02 27.3 11.5 52 144-199 665-716 (988)
366 smart00671 SEL1 Sel1-like repe 24.6 1.7E+02 0.0036 17.6 4.0 26 208-233 3-32 (36)
367 PRK00409 recombination and DNA 24.5 7.8E+02 0.017 26.6 10.9 6 264-269 642-647 (782)
368 PF08969 USP8_dimer: USP8 dime 24.3 1.7E+02 0.0036 23.5 4.7 34 165-198 35-68 (115)
369 COG1422 Predicted membrane pro 24.1 2E+02 0.0044 26.7 5.7 17 113-129 72-88 (201)
370 PF02255 PTS_IIA: PTS system, 24.0 1.5E+02 0.0032 23.9 4.3 31 166-196 12-42 (96)
371 PF10414 CysG_dimeriser: Siroh 23.9 2.8E+02 0.006 19.9 5.8 48 145-196 12-60 (60)
372 KOG1129 TPR repeat-containing 23.9 1.5E+02 0.0032 30.4 5.2 62 172-237 399-460 (478)
373 cd02680 MIT_calpain7_2 MIT: do 23.5 1.4E+02 0.003 23.4 4.0 31 168-198 6-36 (75)
374 PRK04778 septation ring format 23.5 5.9E+02 0.013 26.1 9.5 72 154-233 131-204 (569)
375 KOG0319 WD40-repeat-containing 23.5 7.4E+02 0.016 27.4 10.4 44 222-269 691-735 (775)
376 KOG0550 Molecular chaperone (D 23.4 2E+02 0.0043 29.9 6.0 79 168-250 287-365 (486)
377 PF12793 SgrR_N: Sugar transpo 23.2 1.2E+02 0.0026 25.0 3.8 25 169-193 71-95 (115)
378 PLN03086 PRLI-interacting fact 23.2 4.8E+02 0.01 27.6 8.8 10 212-221 83-92 (567)
379 KOG3081 Vesicle coat complex C 23.1 1.4E+02 0.003 29.3 4.7 49 171-224 11-59 (299)
380 PF08711 Med26: TFIIS helical 22.8 67 0.0015 22.4 1.9 23 230-253 26-49 (53)
381 PRK13800 putative oxidoreducta 22.4 3.7E+02 0.008 29.0 8.1 72 173-252 793-865 (897)
382 COG1516 FliS Flagellin-specifi 22.4 2.3E+02 0.0049 24.7 5.4 51 166-216 29-84 (132)
383 COG4715 Uncharacterized conser 22.3 8.5E+02 0.018 26.1 10.4 82 147-231 349-430 (587)
384 PF04190 DUF410: Protein of un 21.9 2.4E+02 0.0052 26.0 5.8 42 180-221 2-45 (260)
385 PF06160 EzrA: Septation ring 21.8 8E+02 0.017 25.3 10.0 78 148-233 118-200 (560)
386 smart00770 Zn_dep_PLPC Zinc de 21.7 1.5E+02 0.0032 27.9 4.5 34 166-199 112-145 (241)
387 PTZ00429 beta-adaptin; Provisi 21.6 9.4E+02 0.02 26.1 10.8 129 119-256 5-136 (746)
388 COG3387 SGA1 Glucoamylase and 21.5 94 0.002 32.5 3.4 29 209-238 540-568 (612)
389 PF05600 DUF773: Protein of un 21.5 9.1E+02 0.02 24.9 12.7 67 171-263 189-255 (507)
390 PF10938 YfdX: YfdX protein; 21.3 2.1E+02 0.0045 24.7 5.0 31 166-196 115-145 (155)
391 COG1340 Uncharacterized archae 21.2 7.7E+02 0.017 24.2 9.2 73 99-175 130-202 (294)
392 PRK04863 mukB cell division pr 21.1 1.4E+03 0.03 27.0 16.3 71 181-251 413-504 (1486)
393 PF13934 ELYS: Nuclear pore co 21.1 3.4E+02 0.0074 24.6 6.5 56 170-233 80-135 (226)
394 PRK06231 F0F1 ATP synthase sub 21.0 6.1E+02 0.013 22.7 11.3 52 145-196 125-181 (205)
395 PF15384 DUF4610: Domain of un 20.9 83 0.0018 29.2 2.6 49 26-82 148-197 (197)
396 COG4455 ImpE Protein of avirul 20.7 5.7E+02 0.012 24.8 8.1 68 176-249 9-76 (273)
397 cd03561 VHS VHS domain family; 20.7 3E+02 0.0064 22.6 5.6 25 223-249 37-61 (133)
398 PF10165 Ric8: Guanine nucleot 20.5 4.2E+02 0.009 26.4 7.5 64 187-252 247-335 (446)
399 PF04010 DUF357: Protein of un 20.3 3.5E+02 0.0077 20.9 5.6 29 163-191 30-58 (75)
400 TIGR01069 mutS2 MutS2 family p 20.3 7.5E+02 0.016 26.7 9.8 7 264-270 630-636 (771)
401 PRK05629 hypothetical protein; 20.1 1.6E+02 0.0035 27.2 4.4 63 170-237 195-263 (318)
402 KOG1999 RNA polymerase II tran 20.1 23 0.00051 39.3 -1.3 24 98-121 67-90 (1024)
No 1
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.72 E-value=1e-07 Score=81.91 Aligned_cols=81 Identities=23% Similarity=0.341 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHH
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAA 246 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAK 246 (276)
+++..|..|..+|++|+|.+||..|+.+....| +|+...+++++++.||...|+.++|+..|+.++..||+..-..+|-
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P-~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYP-NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T-TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 467899999999999999999999999888654 5888899999999999999999999999999999999998777775
Q ss_pred HH
Q 023865 247 DL 248 (276)
Q Consensus 247 qL 248 (276)
.+
T Consensus 83 Y~ 84 (203)
T PF13525_consen 83 YM 84 (203)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 2
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.70 E-value=4.7e-08 Score=68.40 Aligned_cols=57 Identities=28% Similarity=0.378 Sum_probs=52.0
Q ss_pred HHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 178 AYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 178 ALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
++++|+|.+|+++|++++...|.+.. +++.|+.+|...|+.++|..+|+.+...+|+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPE----ARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHH----HHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 58899999999999999997777554 9999999999999999999999999999998
No 3
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.68 E-value=1.5e-07 Score=65.83 Aligned_cols=64 Identities=25% Similarity=0.333 Sum_probs=56.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 172 yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
|..|...+++|+|.+|+..|+.++...| ...+++++|+.+|...|+.++|+.+|+.+++..|+.
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P----~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDP----DNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCST----THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 5789999999999999999999999654 466799999999999999999999999998788863
No 4
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.49 E-value=9.5e-07 Score=75.61 Aligned_cols=80 Identities=29% Similarity=0.311 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq 247 (276)
+...|+.|+.+|++|+|..||+.||.+.+..| .++..-++|++|+-||..+|+.++|++.++.+++-||...---+|-.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP-~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYP-FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 56789999999999999999999999777555 45555699999999999999999999999999999998776666554
Q ss_pred H
Q 023865 248 L 248 (276)
Q Consensus 248 L 248 (276)
+
T Consensus 89 ~ 89 (142)
T PF13512_consen 89 M 89 (142)
T ss_pred H
Confidence 4
No 5
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.44 E-value=3.7e-06 Score=62.35 Aligned_cols=76 Identities=17% Similarity=0.260 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHH
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQA 245 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQA 245 (276)
...|..|...+..|+|..|+.+|+.++...|.+. .-..+.+.++.+|...|+.++|+.+++.+...+|+.....+|
T Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 40 NAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP-KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC-cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 3455566666666666666666666665544332 112456666666666666666666666666666666665555
No 6
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.40 E-value=2.1e-06 Score=76.96 Aligned_cols=83 Identities=18% Similarity=0.149 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHH
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAA 246 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAK 246 (276)
.++..|..|..++.+|+|.+||+.|+.++...| .++...++++||+.||...|+.+.|+..++..++.||+..-..+|-
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 456689999999999999999999999998666 5588889999999999999999999999999999999998888777
Q ss_pred HHHH
Q 023865 247 DLRY 250 (276)
Q Consensus 247 qLLy 250 (276)
.++.
T Consensus 110 Y~~g 113 (243)
T PRK10866 110 YMRG 113 (243)
T ss_pred HHHH
Confidence 7654
No 7
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.38 E-value=9.4e-07 Score=62.15 Aligned_cols=67 Identities=27% Similarity=0.420 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCC
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN-RHADCIALYKQLESNHP 237 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~G-q~EkAIALCQ~L~~~HP 237 (276)
.|...+..|..++..|+|.+||..|++++...|.+. .+.+.++.+|...| +.++|+..|++.++-.|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~----~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA----EAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH----HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 366788999999999999999999999999766554 49999999999999 79999999999885544
No 8
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.33 E-value=7e-06 Score=60.87 Aligned_cols=70 Identities=20% Similarity=0.381 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
+..|..|...+.+|+|..|+..|+.++...|. ++....+.++++.+|...|+.+.|+.+|+.+...+|+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPK-STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence 56799999999999999999999999987654 34456899999999999999999999999998778884
No 9
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.31 E-value=6.8e-06 Score=75.13 Aligned_cols=82 Identities=18% Similarity=0.229 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL 248 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqL 248 (276)
...|-.|...|.+|+|..|+..|..++...| .++....+.+.++.+|...|+.++|+.+|+++++.||++.....|++.
T Consensus 181 ~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP-~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~r 259 (263)
T PRK10803 181 NANYWLGQLNYNKGKKDDAAYYFASVVKNYP-KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKR 259 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 4667888888888888888888888887665 445567788888888888889999999998888888888888888877
Q ss_pred HHh
Q 023865 249 RYI 251 (276)
Q Consensus 249 LyI 251 (276)
|..
T Consensus 260 L~~ 262 (263)
T PRK10803 260 LNA 262 (263)
T ss_pred Hhc
Confidence 653
No 10
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.14 E-value=7.2e-05 Score=60.56 Aligned_cols=85 Identities=15% Similarity=0.093 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023865 162 AERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI 241 (276)
Q Consensus 162 a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV 241 (276)
..+.+.+...|.....++..|++..+.+.++.++. ..++++....++|.||.+|...|+.++|++.++++....|++.+
T Consensus 5 ~~~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~-~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l 83 (145)
T PF09976_consen 5 QQQAEQASALYEQALQALQAGDPAKAEAAAEQLAK-DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPEL 83 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHH
Confidence 44566688899999999999999999888999777 45566778899999999999999999999999999988889988
Q ss_pred HHHHHH
Q 023865 242 RRQAAD 247 (276)
Q Consensus 242 RqQAKq 247 (276)
+..|+-
T Consensus 84 ~~~a~l 89 (145)
T PF09976_consen 84 KPLARL 89 (145)
T ss_pred HHHHHH
Confidence 877754
No 11
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.12 E-value=2.7e-05 Score=55.10 Aligned_cols=70 Identities=19% Similarity=0.122 Sum_probs=62.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 023865 176 QKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLR 249 (276)
Q Consensus 176 ~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLL 249 (276)
..++.+++|..|++.++.++...|.+.. +.+.++.+|...|+.++|+..|++..+.+|+.....+++.+|
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPE----LWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccch----hhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 4678999999999999999997776444 889999999999999999999999999999999888887765
No 12
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.04 E-value=4.8e-05 Score=64.48 Aligned_cols=73 Identities=26% Similarity=0.350 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI 241 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV 241 (276)
+...|..|...+..|+|..|+..|+.++...| .++...++.+.++.+|...|+.++|+.+|+.++..+|+...
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 105 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD 105 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 55689999999999999999999999988665 44556679999999999999999999999999988996554
No 13
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.01 E-value=7e-05 Score=61.42 Aligned_cols=81 Identities=15% Similarity=0.041 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH----HHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK----NIRR 243 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~----qVRq 243 (276)
+...+..|......|+|.+|+..|..++...|.+. .+.+.|+.+|...|+.++||+.|+..+...|+- .++.
T Consensus 58 ~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~----~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~ 133 (144)
T PRK15359 58 WRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP----EPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQ 133 (144)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 44567788889999999999999999998665544 499999999999999999999999988777876 7888
Q ss_pred HHHHHHHhh
Q 023865 244 QAADLRYIL 252 (276)
Q Consensus 244 QAKqLLyIL 252 (276)
+++.+|.-|
T Consensus 134 ~~~~~l~~~ 142 (144)
T PRK15359 134 NAQIMVDTL 142 (144)
T ss_pred HHHHHHHHH
Confidence 888877655
No 14
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.97 E-value=6.3e-05 Score=68.85 Aligned_cols=78 Identities=13% Similarity=0.154 Sum_probs=67.0
Q ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023865 169 QLMFELGQKA-YGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (276)
Q Consensus 169 e~~yeaG~aA-LerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq 247 (276)
...|+.+... +.+|+|.+||..|+.++...|. +..-..+++||+.+|...|+.++|+..|+.+++.||+....-.|-.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~-s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD-STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 6789999986 6789999999999999997765 4455689999999999999999999999999999999765555543
No 15
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.97 E-value=6.9e-05 Score=57.98 Aligned_cols=69 Identities=12% Similarity=-0.044 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI 241 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV 241 (276)
...+..|...+..|+|.+|+..|+.++...|.+ ..+.+.++.+|...|+.++|+..++...+.+|+...
T Consensus 52 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 52 RYWLGLAACCQMLKEYEEAIDAYALAAALDPDD----PRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 456778899999999999999999998865443 358899999999999999999999999988888776
No 16
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.88 E-value=8.9e-05 Score=48.92 Aligned_cols=65 Identities=26% Similarity=0.409 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
.+..|...+.+|+|..|+.+|+.++...+.+. .+.++++.+|...|+.++|+.+|+.....+|..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 67 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA----DAYYNLAAAYYKLGKYEEALEDYEKALELDPDN 67 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 46677788888888888888888887655432 578888888888888888888888877555554
No 17
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.86 E-value=0.00013 Score=61.91 Aligned_cols=67 Identities=21% Similarity=0.112 Sum_probs=59.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
.+..|...+.+|+|.+|+..++.++...|. ++...++.+.++.+|...|+.++|+.+++.|..+||+
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPD-TPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 467788899999999999999999987664 4666789999999999999999999999999988874
No 18
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.71 E-value=0.00023 Score=61.38 Aligned_cols=84 Identities=19% Similarity=0.220 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHhC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR-----------HADCIALYKQLESNH 236 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq-----------~EkAIALCQ~L~~~H 236 (276)
.+..|..|.+.|..|+|..|+..++..+...|.+. .-..+.++++++|....+ ..+|+..|+.|+.++
T Consensus 42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~-~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y 120 (203)
T PF13525_consen 42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP-KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY 120 (203)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T-THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc-chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC
Confidence 34578889999999999999999999999777655 457999999999877543 459999999999999
Q ss_pred CCHHHHHHHHHHHHhh
Q 023865 237 PSKNIRRQAADLRYIL 252 (276)
Q Consensus 237 Pd~qVRqQAKqLLyIL 252 (276)
|++.-...|+..+..|
T Consensus 121 P~S~y~~~A~~~l~~l 136 (203)
T PF13525_consen 121 PNSEYAEEAKKRLAEL 136 (203)
T ss_dssp TTSTTHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHH
Confidence 9999999999877665
No 19
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.68 E-value=0.00017 Score=59.22 Aligned_cols=64 Identities=19% Similarity=0.205 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
.+..|..++.+|+|..|+..|..++...|.+. ++.+.|+.++...|+.++|+..|+....-.|+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSW----RAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 66779999999999999999999998666554 59999999999999999999999999976664
No 20
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.66 E-value=0.00037 Score=65.45 Aligned_cols=82 Identities=13% Similarity=0.084 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQAA 246 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVRqQAK 246 (276)
+...+..|...+..|+|..|+..|+.++...|.+ ..+++.|+.+|...|+.++|+..|+.....+|+ +.+..|-.
T Consensus 36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~----~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 36 AELYADRAQANIKLGNFTEAVADANKAIELDPSL----AKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 5677888999999999999999999999976644 358999999999999999999999998877775 88888888
Q ss_pred HHHHhhc
Q 023865 247 DLRYILQ 253 (276)
Q Consensus 247 qLLyILE 253 (276)
.+..-|.
T Consensus 112 ~~~~kl~ 118 (356)
T PLN03088 112 ECDEKIA 118 (356)
T ss_pred HHHHHHH
Confidence 8877773
No 21
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.62 E-value=0.00031 Score=54.39 Aligned_cols=73 Identities=15% Similarity=0.216 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQ 244 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVRqQ 244 (276)
....+..|..++..|+|..|+++|+.++...|.+. .+.+.++.+|...|+.++|+.+|++.+..+|+ +.+.-.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS----RYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 45578899999999999999999999998766543 59999999999999999999999999867775 344433
No 22
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.61 E-value=0.00027 Score=50.86 Aligned_cols=67 Identities=19% Similarity=0.164 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC---CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP---RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~---~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
++......|...+.+|+|.+|+.+|+++++... ...+.-+.+..-|+.+|...|+.++|+.++++-.
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 466778899999999999999999999997632 2233347788899999999999999999998865
No 23
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.57 E-value=0.00018 Score=53.14 Aligned_cols=51 Identities=25% Similarity=0.396 Sum_probs=35.0
Q ss_pred hcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 023865 180 GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQL 232 (276)
Q Consensus 180 erGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L 232 (276)
++|+|..||.+++++++..|.++ -..+.++||.+|...|+.++||.+|+++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~~ 51 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQGKYEEAIELLQKL 51 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTTHHHHHHHHHHCH
T ss_pred CCccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 36778888888888777666532 2345666688888888888888888664
No 24
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.57 E-value=0.00051 Score=45.27 Aligned_cols=65 Identities=23% Similarity=0.343 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (276)
...+..|...+..|+|..|+.+|+.++...+... .+...++.+|...|+.++|+.+++.+...+|
T Consensus 35 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 35 DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA----KAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch----hHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 3467778888889999999999999998766554 6889999999999999999999999885555
No 25
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.54 E-value=0.0006 Score=63.57 Aligned_cols=80 Identities=24% Similarity=0.251 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq 247 (276)
+...|+.|++.|+.|+|.+||..||.+...+| .++..-|+|+-|+.||...|+.+.|+......+..||...=...|-.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p-~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHP-FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 67799999999999999999999999776554 56666899999999999999999999999999888988766666655
Q ss_pred H
Q 023865 248 L 248 (276)
Q Consensus 248 L 248 (276)
|
T Consensus 113 l 113 (254)
T COG4105 113 L 113 (254)
T ss_pred H
Confidence 4
No 26
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.54 E-value=0.001 Score=59.80 Aligned_cols=83 Identities=12% Similarity=0.072 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCC------------------hHHHHHHHH
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR------------------HADCIALYK 230 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq------------------~EkAIALCQ 230 (276)
+..|..|...|..|+|..|+..++.++...|.+.. -..+.+.+++++...|+ ..+|+..++
T Consensus 70 ~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~-~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~ 148 (243)
T PRK10866 70 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFS 148 (243)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc-hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHH
Confidence 34688999999999999999999999998776644 47899999998766652 368999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHhh
Q 023865 231 QLESNHPSKNIRRQAADLRYIL 252 (276)
Q Consensus 231 ~L~~~HPd~qVRqQAKqLLyIL 252 (276)
.|+++||+++-...|+..|..|
T Consensus 149 ~li~~yP~S~ya~~A~~rl~~l 170 (243)
T PRK10866 149 KLVRGYPNSQYTTDATKRLVFL 170 (243)
T ss_pred HHHHHCcCChhHHHHHHHHHHH
Confidence 9999999999999999866554
No 27
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.53 E-value=0.00012 Score=44.71 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 207 EIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 207 EAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
+++++++.+|...|+.++|+.+++.++++||++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 578999999999999999999999999999974
No 28
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.46 E-value=0.0011 Score=52.57 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
...+..|...+.+|+|..|++++++++...+.+. .+.+.++.+|...|+.++|+.+|+...
T Consensus 66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~~g~~~~A~~~~~~~~ 126 (234)
T TIGR02521 66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNG----DVLNNYGTFLCQQGKYEQAMQQFEQAI 126 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3445556666677777777777777766544332 366666777777777777777777766
No 29
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.43 E-value=0.0012 Score=54.52 Aligned_cols=78 Identities=18% Similarity=0.149 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL 248 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqL 248 (276)
..|+.|-.--..|+..+||.+++.++.. .......-++.|.|+.+|...|+.++|+++.++....||+.+.....+-+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 4678888888899999999999999884 44455556799999999999999999999999999888987766665544
No 30
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.41 E-value=0.0033 Score=50.31 Aligned_cols=73 Identities=23% Similarity=0.329 Sum_probs=55.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH-------hCCCHHHHHHH
Q 023865 173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES-------NHPSKNIRRQA 245 (276)
Q Consensus 173 eaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~-------~HPd~qVRqQA 245 (276)
..+...+..|+|..|+.++..++...|.+-. +..+|..+|.+.|+...|+..|+++.. ..|.+.++...
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~----~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~ 142 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALDPYDEE----AYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALY 142 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT-HH----HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHH
Confidence 4556788999999999999999997777655 999999999999999999999988752 24777777776
Q ss_pred HHHH
Q 023865 246 ADLR 249 (276)
Q Consensus 246 KqLL 249 (276)
+.+|
T Consensus 143 ~~il 146 (146)
T PF03704_consen 143 REIL 146 (146)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 6654
No 31
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.41 E-value=0.00068 Score=60.87 Aligned_cols=66 Identities=15% Similarity=0.187 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
+...|..|..++..|+|..|+..|+.++...|.+ ..+++.|+..|...|+.++|+.+++.+. .+|+
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l-~~~~ 100 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPET----VELHLALGNLFRRRGEVDRAIRIHQNLL-SRPD 100 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCcHHHHHHHHHHHh-cCCC
Confidence 4456666777777777777777777777654432 2466667777777777777777777776 4543
No 32
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.40 E-value=0.00087 Score=62.66 Aligned_cols=66 Identities=17% Similarity=0.364 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (276)
.|+.+..+|..|+|..|.+.|-..+...|.++. -..+++||-.+|.+.|+.+.|..+|-...+.||
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~-~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P 209 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY-TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP 209 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc-cchhHHHHHHHHHhcccchHHHHHHHHHHHhCC
Confidence 555555555555555555555555554443322 234555555555444444444444433333333
No 33
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.39 E-value=0.0028 Score=51.34 Aligned_cols=66 Identities=23% Similarity=0.240 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
.....|..|..++.+|+|..|+..|+.++... ++..+...+++.||..|...|+.++|+++++.+.
T Consensus 47 a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~ 112 (145)
T PF09976_consen 47 AALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQYDEALATLQQIP 112 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Confidence 35567889999999999999999999999865 4556667899999999999999999999997754
No 34
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.33 E-value=0.002 Score=60.52 Aligned_cols=66 Identities=15% Similarity=0.146 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
..++..|..||..|+|..||++|..++...|.+. .+.+.++.+|...|+.++|+..|+.++...|+
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~----~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~ 68 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA----ELYADRAQANIKLGNFTEAVADANKAIELDPS 68 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 3467789999999999999999999999777553 58899999999999999999999999877775
No 35
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.33 E-value=0.0018 Score=53.19 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHH
Q 023865 150 VRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALY 229 (276)
Q Consensus 150 v~~~L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALC 229 (276)
++..|.+..+ +......+...+..|...+.+|+|..|+.+|..++...+. +..-..+..-|+.+|...|+.++|+.+|
T Consensus 18 ~~~~l~~~~~-~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 18 VADILLRILP-TTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID-PYDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred chhhhhHhcc-CCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3444544432 3444456788899999999999999999999999987543 2222458889999999999999999999
Q ss_pred HHHHHhCCC
Q 023865 230 KQLESNHPS 238 (276)
Q Consensus 230 Q~L~~~HPd 238 (276)
++....+|.
T Consensus 96 ~~Al~~~~~ 104 (168)
T CHL00033 96 FQALERNPF 104 (168)
T ss_pred HHHHHhCcC
Confidence 998855554
No 36
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.28 E-value=0.0027 Score=52.68 Aligned_cols=74 Identities=24% Similarity=0.336 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
...+...|..|...+..|+|.+|+.+|+.++...+.. ..-..+...|+.+|...|+.++|+.+|++....+|+.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP-NDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 4456678999999999999999999999999865432 2235689999999999999999999999999777764
No 37
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.28 E-value=0.0013 Score=62.47 Aligned_cols=68 Identities=24% Similarity=0.166 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
+...+..|..++.+|+|.+|+..|..++...|. ..++++.|+.+|...|+.++|+..++.+...+|+.
T Consensus 22 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 89 (899)
T TIGR02917 22 PESLIEAAKSYLQKNKYKAAIIQLKNALQKDPN----DAEARFLLGKIYLALGDYAAAEKELRKALSLGYPK 89 (899)
T ss_pred HHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh
Confidence 345788899999999999999999999885444 33689999999999999999999999988666654
No 38
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.25 E-value=0.0017 Score=60.52 Aligned_cols=72 Identities=22% Similarity=0.209 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 164 ~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
+.+.++..++.|..-|++|+|.+|-..||+|++..|.+.. ++..||..|+..|+.+.|-.-|++-.+-+|+.
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~----a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~ 102 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYL----AHLVRAHYYQKLGENDLADESYRKALSLAPNN 102 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH----HHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc
Confidence 3455777899999999999999999999999997666665 99999999999999999999999987677753
No 39
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.20 E-value=0.0026 Score=59.52 Aligned_cols=82 Identities=15% Similarity=0.183 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq 247 (276)
+...|=.|+.-|.+|+|..|...|..++...|. ++--.++.+=|+++....|++++|-+.++++++++|+..-.+.|+.
T Consensus 178 ~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~-s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~ 256 (262)
T COG1729 178 PNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK-SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKV 256 (262)
T ss_pred chhHHHHHHHHHhcccchHHHHHHHHHHHhCCC-CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 346677899999999999999999999986654 4445689999999999999999999999999999999999999998
Q ss_pred HHH
Q 023865 248 LRY 250 (276)
Q Consensus 248 LLy 250 (276)
.+.
T Consensus 257 ~~~ 259 (262)
T COG1729 257 ALK 259 (262)
T ss_pred HHh
Confidence 763
No 40
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.19 E-value=0.0019 Score=56.29 Aligned_cols=75 Identities=19% Similarity=0.109 Sum_probs=44.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC----CCHHHHHHHHHHHH
Q 023865 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH----PSKNIRRQAADLRY 250 (276)
Q Consensus 175 G~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H----Pd~qVRqQAKqLLy 250 (276)
|..-=.+|+|.+||..+..+..+.+ +.+ ++...++.+|-+.|+.+.|++.++.-+..+ -+.+++++|+.+|.
T Consensus 76 G~~~Q~~g~~~~AI~aY~~A~~L~~-ddp---~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~ 151 (157)
T PRK15363 76 GECCQAQKHWGEAIYAYGRAAQIKI-DAP---QAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQ 151 (157)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCC-CCc---hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Confidence 3333344555555555555544332 333 356666666666666666666666666556 56778888888877
Q ss_pred hhc
Q 023865 251 ILQ 253 (276)
Q Consensus 251 ILE 253 (276)
.|.
T Consensus 152 ~l~ 154 (157)
T PRK15363 152 QLS 154 (157)
T ss_pred Hhh
Confidence 764
No 41
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.15 E-value=0.013 Score=50.90 Aligned_cols=69 Identities=19% Similarity=0.205 Sum_probs=55.3
Q ss_pred HHHHHHHHHHH-HhcCC--HHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865 168 AQLMFELGQKA-YGKGM--YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (276)
Q Consensus 168 ae~~yeaG~aA-LerGd--Y~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (276)
....+..|... +..|+ |.+|+++|++++...|.+.. +++.|+++|...|+.++||+.|+++.+..|...
T Consensus 107 ~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~----al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 107 AELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVT----ALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChh----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 44556666653 56677 69999999999997777665 999999999999999999999999885665543
No 42
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.10 E-value=0.0091 Score=47.27 Aligned_cols=67 Identities=22% Similarity=0.239 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
...+..|...+..|+|..|+.+|+.++...+.+ ..+.+.++.+|...|+.++|+.++++.....|+.
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 202 (234)
T TIGR02521 136 RSLENAGLCALKAGDFDKAEKYLTRALQIDPQR----PESLLELAELYYLRGQYKDARAYLERYQQTYNQT 202 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 345667888899999999999999999866543 3588899999999999999999999887554543
No 43
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.08 E-value=0.0042 Score=61.23 Aligned_cols=69 Identities=19% Similarity=0.134 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
.+.+....+.|..+|.+|+|..||..|++++...|. + .....++.+|...|+.++||..|...+...|+
T Consensus 124 ~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~--~---~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~ 192 (615)
T TIGR00990 124 KKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD--P---VYYSNRAACHNALGDWEKVVEDTTAALELDPD 192 (615)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--h---HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Confidence 345666777888888888888888888888886652 2 36777888888888888888888888755554
No 44
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.01 E-value=0.0019 Score=47.65 Aligned_cols=58 Identities=24% Similarity=0.394 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQ 231 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~ 231 (276)
.-.|..|...|..|+|.+||.+|.. ....+.+ ..+++.++.+|...|+.++||..++.
T Consensus 26 ~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~----~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 26 AYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN----PDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH----HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3567789999999999999999998 4433322 46888999999999999999999874
No 45
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.95 E-value=0.0067 Score=52.97 Aligned_cols=79 Identities=9% Similarity=0.034 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CHHHHHH
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP-SKNIRRQ 244 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP-d~qVRqQ 244 (276)
++.+..|.-|-..+++|+|..|+.+|+.+|...+.+.. -.|.|+.+|+..|+.++||..|..-..-.| +|..-..
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~----y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ 108 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFD----YWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH----HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 45667999999999999999999999999998887777 899999999999999999999998764444 3444444
Q ss_pred HHHH
Q 023865 245 AADL 248 (276)
Q Consensus 245 AKqL 248 (276)
+-..
T Consensus 109 ag~c 112 (157)
T PRK15363 109 AAEC 112 (157)
T ss_pred HHHH
Confidence 4443
No 46
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.94 E-value=0.0051 Score=55.82 Aligned_cols=69 Identities=16% Similarity=0.084 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (276)
+...+..|...+..|+|..|++.|+.++...|.+. .+.+.++.+|...|+.++|+..|+.....+|+.-
T Consensus 98 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~----~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 98 ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN----YAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 45678889999999999999999999999766654 4899999999999999999999999988888754
No 47
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.85 E-value=0.0086 Score=53.85 Aligned_cols=70 Identities=24% Similarity=0.296 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI 241 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV 241 (276)
...+..|...+.+|+|..|+++|+.++...+.+. ..+...|+.+|...|+.++|+.+++.+...+|+..+
T Consensus 215 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~ 284 (389)
T PRK11788 215 RASILLGDLALAQGDYAAAIEALERVEEQDPEYL---SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL 284 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH
Confidence 3455567777777777777777777776543322 245566677777777777777777776656666543
No 48
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.77 E-value=0.01 Score=59.48 Aligned_cols=66 Identities=18% Similarity=0.150 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES 234 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~ 234 (276)
+...++.|.+-+..|+|..||+.|+.++++.|.+.. ...+.+.|+.+|...|+.++|++.+++-+.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae-A~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE-AQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445788899999999999999999999997665432 123699999999999999999999999883
No 49
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.76 E-value=0.0031 Score=42.29 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865 207 EIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (276)
Q Consensus 207 EAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (276)
.+++.|+.+|...|+.++|+.+|+.+.+.+|+.-
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 4789999999999999999999999999999864
No 50
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=96.73 E-value=0.0043 Score=43.73 Aligned_cols=43 Identities=21% Similarity=0.171 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 023865 209 QIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (276)
Q Consensus 209 QmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyIL 252 (276)
++-||.||...|+.+.|..+-+.+. .++++..+..|+.||.-|
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl-~~~~~~q~~eA~~LL~~l 44 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVI-EEGDEAQRQEARALLAQL 44 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHH-HcCCHHHHHHHHHHHhcC
Confidence 5679999999999999999999999 899999999999998753
No 51
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.67 E-value=0.029 Score=48.75 Aligned_cols=68 Identities=15% Similarity=0.119 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHH-HHHcCC--hHHHHHHHHHHHHhCCCH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMA-YEANNR--HADCIALYKQLESNHPSK 239 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtA-Yqa~Gq--~EkAIALCQ~L~~~HPd~ 239 (276)
++.-+..|...+..|+|..|+..|++++...|.+. ++.+.++++ |...|+ .++|+.++++....+|+.
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~----~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~ 143 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENA----ELYAALATVLYYQAGQHMTPQTREMIDKALALDANE 143 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC
Confidence 55678889999999999999999999999777654 489999998 578888 599999999999888864
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=96.64 E-value=0.022 Score=53.82 Aligned_cols=70 Identities=17% Similarity=0.064 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (276)
.+...+..|..|+..|+|..|.+.+.++....+.+ .-..+..|.++...|+.+.|..+++...+.+|++.
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~----~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~ 152 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEP----VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN 152 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc
Confidence 44455666666666666666666666655533221 23455556666666666666666666555556654
No 53
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.60 E-value=0.013 Score=60.90 Aligned_cols=76 Identities=9% Similarity=-0.101 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq 247 (276)
+...+..|..--+.|+|.+|++.|++++... +... +++++++.+++..|+.++|.+.|++.+ ..-.+-+++.+..
T Consensus 154 ~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~---~~~~~~a~~l~~~G~~~~A~~~~~~a~-~~~~~~~~~~~~~ 228 (694)
T PRK15179 154 AREILLEAKSWDEIGQSEQADACFERLSRQH-PEFE---NGYVGWAQSLTRRGALWRARDVLQAGL-DAIGDGARKLTRR 228 (694)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhhCcchHHHHHH
Confidence 7788899999999999999999999999822 2333 699999999999999999999999999 4556666776666
Q ss_pred H
Q 023865 248 L 248 (276)
Q Consensus 248 L 248 (276)
+
T Consensus 229 ~ 229 (694)
T PRK15179 229 L 229 (694)
T ss_pred H
Confidence 5
No 54
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.59 E-value=0.017 Score=58.59 Aligned_cols=67 Identities=15% Similarity=0.159 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
...+..|...+.+|+|..|+..|+.++...|.+. .+...|+.+|...|+.++|++.|+.+...+|+.
T Consensus 285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~----~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 285 RIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP----YVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 3455667778888888888888888887654432 477778888888888888888888877677764
No 55
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.56 E-value=0.01 Score=58.63 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
....+..|...+..|+|..|+..|++++...|.+. .+.+.|+.+|...|+.++|+.+|+.....+|+
T Consensus 399 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~----~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~ 465 (615)
T TIGR00990 399 PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI----FSHIQLGVTQYKEGSIASSMATFRRCKKNFPE 465 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 45667778888888888888888888888665443 46778888888888888888888888767776
No 56
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=96.54 E-value=0.014 Score=62.73 Aligned_cols=72 Identities=18% Similarity=0.146 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (276)
Q Consensus 165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (276)
..+..-.|..|.....+|+|..|+..|+.|++..|.+ ..+.+.|+.+|...|+.++|+..|++..+.+|+..
T Consensus 41 ~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n----~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~ 112 (987)
T PRK09782 41 HFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDN----IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDA 112 (987)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence 4556678899999999999999999999999977777 35889999999999999999999999997777543
No 57
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.50 E-value=0.058 Score=46.55 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCC---------------hHHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR---------------HADCIALYKQL 232 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq---------------~EkAIALCQ~L 232 (276)
.+..|..|-+-|.+|+|..|+..++..+.++|.+-.. .-|.+...++|..... ..+|...++.|
T Consensus 47 ~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~l 125 (142)
T PF13512_consen 47 EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQL 125 (142)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHH
Confidence 4567899999999999999999999999988866543 4588888999999887 89999999999
Q ss_pred HHhCCCHHHHHHHHH
Q 023865 233 ESNHPSKNIRRQAAD 247 (276)
Q Consensus 233 ~~~HPd~qVRqQAKq 247 (276)
+.+||+++-...|+.
T Consensus 126 v~~yP~S~ya~dA~~ 140 (142)
T PF13512_consen 126 VRRYPNSEYAADARK 140 (142)
T ss_pred HHHCcCChhHHHHHh
Confidence 999999999888874
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=96.49 E-value=0.012 Score=57.94 Aligned_cols=66 Identities=11% Similarity=0.087 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
..+..|...+.+|+|.+|+..|++++...|.+. .+.++|+.+|...|+.++|+..|+.....+|+.
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~----~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~ 405 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISA----DIKYYYGWNLFMAGQLEEALQTINECLKLDPTR 405 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 344557777889999999999999998765544 378899999999999999999999988777874
No 59
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.46 E-value=0.019 Score=58.93 Aligned_cols=89 Identities=16% Similarity=0.116 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq 247 (276)
....+..|.....+|+|.+|++.|++++...|.+.. +.+.+++++.+.|+.++|.++++.++..+|+.-.-+.-++
T Consensus 393 ~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~----l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~ 468 (765)
T PRK10049 393 QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNIN----LEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLAR 468 (765)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH----HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 345667788888899999999999999987765554 8888999999999999999999999999999888888888
Q ss_pred HHHhhcCCCCCCC
Q 023865 248 LRYILQAPKLKIS 260 (276)
Q Consensus 248 LLyILEAPkLkrp 260 (276)
.+.+=.-|+|.+-
T Consensus 469 ~~~~~~~~~l~~~ 481 (765)
T PRK10049 469 ARDVHHMAELRIA 481 (765)
T ss_pred HHHhccCceEEEE
Confidence 8877777777544
No 60
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.43 E-value=0.03 Score=49.87 Aligned_cols=69 Identities=14% Similarity=0.174 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (276)
...+..|...+++|+|.+|+++|++++...+.........++.++..|...|+.++|+.+|+++....|
T Consensus 149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 345667888999999999999999999877765555556677899999999999999999999763444
No 61
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=0.011 Score=61.29 Aligned_cols=69 Identities=25% Similarity=0.329 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC-----CCCC-chH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP-----RPTF-FGG-----EIQIWLAMAYEANNRHADCIALYKQLESN 235 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~-----~nS~-lGG-----EAQmwLAtAYqa~Gq~EkAIALCQ~L~~~ 235 (276)
+++..|+.+-.-++.|+|.+||++|+++..++. ..+. .+. -++..|+.+|+-.|++++|.++|..++++
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 588999999999999999999999999933222 2222 233 36778999999999999999999998843
No 62
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.34 E-value=0.041 Score=58.93 Aligned_cols=66 Identities=17% Similarity=0.270 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (276)
....|...+.+|+|.+|++.|++++...|.+. .+.+.|+.+|...|+.++|+++|+++...+|+.-
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~----~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~ 529 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLALDPGSV----WLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDP 529 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 45578888999999999999999999766543 4899999999999999999999999987788643
No 63
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=96.34 E-value=0.027 Score=53.21 Aligned_cols=61 Identities=23% Similarity=0.218 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
+...+..|..++.+|+|++|.++||++++..|.+ ...++|+.+|.+.|++++|..+|++=.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-----~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-----YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567788999999999999999999999854332 356789999999999999999998654
No 64
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.31 E-value=0.017 Score=58.58 Aligned_cols=69 Identities=10% Similarity=0.104 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI 241 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV 241 (276)
...+..|..++.+|+|..|+..|+.++...|.+. .+.+.++.+|...|+.++|++.|+.+...+|++..
T Consensus 111 ~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~----~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~ 179 (656)
T PRK15174 111 EDVLLVASVLLKSKQYATVADLAEQAWLAFSGNS----QIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD 179 (656)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH
Confidence 3456668888888888888888888888655443 47888888888888888888888887667776543
No 65
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.28 E-value=0.023 Score=60.11 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 208 IQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 208 AQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
+...+|.+|...|+.++||.+|+++....|+.
T Consensus 104 ~llalA~ly~~~gdyd~Aiely~kaL~~dP~n 135 (822)
T PRK14574 104 GLASAARAYRNEKRWDQALALWQSSLKKDPTN 135 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 33444566666666666666666666666653
No 66
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.27 E-value=0.029 Score=53.47 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
.+..|...+.+|+|..|+.+|+.++...|.+. .+.+.++..|...|+.++|+..|++....+|+
T Consensus 162 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 225 (899)
T TIGR02917 162 KLGLAQLALAENRFDEARALIDEVLTADPGNV----DALLLKGDLLLSLGNIELALAAYRKAIALRPN 225 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Confidence 34445555555555555555555555433322 35566666666666666666666665544443
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.27 E-value=0.026 Score=51.33 Aligned_cols=69 Identities=19% Similarity=0.216 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (276)
+...|+.|......|++..|+..|.++++..|.+ ..+.+.++.+|...|+.++|+..|++..+..|+..
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~ 132 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDM----ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 132 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 4558889999999999999999999999976654 35999999999999999999999999987778754
No 68
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.25 E-value=0.045 Score=52.59 Aligned_cols=97 Identities=21% Similarity=0.161 Sum_probs=68.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHH----HHHHHH
Q 023865 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRR----QAADLR 249 (276)
Q Consensus 174 aG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRq----QAKqLL 249 (276)
.+.+-.+-|+|..||+=+|.++.+.|..++ +..-|-+||-+.|+.++||..|++-..-.|+-.+-+ +|.+.|
T Consensus 121 RAAAy~~Lg~~~~AVkDce~Al~iDp~ysk----ay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 121 RAAAYSKLGEYEDAVKDCESALSIDPHYSK----AYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcChHHHH----HHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence 344556789999999999999997777766 777899999999999999999999886788877543 444444
Q ss_pred HhhcCCCCCCCcccc---ccc-CCCCCCC
Q 023865 250 YILQAPKLKISQEEM---VTI-PLIGSSY 274 (276)
Q Consensus 250 yILEAPkLkrp~eW~---v~I-PdL~~~y 274 (276)
.....+.-.+....+ +.. |++...|
T Consensus 197 ~e~~~~~~~~~~~d~~~~ig~~Pd~~s~~ 225 (304)
T KOG0553|consen 197 NEPKSSAQASGSFDMAGLIGAFPDSRSMF 225 (304)
T ss_pred cCCCcccccccchhhhhhccCCccchhhh
Confidence 444433333333333 233 6666555
No 69
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.25 E-value=0.031 Score=59.84 Aligned_cols=66 Identities=15% Similarity=0.108 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (276)
.+..|..++.+|+|.+|++.|++++...|.+. .+.+.|+.+|...|+.++|+..|++....+|+..
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~----~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~ 419 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDS----YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT 419 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 34568889999999999999999999876543 5899999999999999999999999987888754
No 70
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=96.21 E-value=0.049 Score=51.50 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=29.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 175 G~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
+..++.+|+|.+|.+.|+...+..|.+. .+..+++.+|...|+.+.|+.+.+.|.
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~----~~l~ll~~~~~~~~d~~~a~~~l~~l~ 214 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHK----EVLKLAEEAYIRSGAWQALDDIIDNMA 214 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444555555555555555555433332 255555555555555555555555555
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=96.20 E-value=0.052 Score=53.61 Aligned_cols=64 Identities=19% Similarity=0.209 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH 236 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H 236 (276)
...+..|...+..|+|.+|+.+|+.++...|.+.. +.++++.+|...|+.++|+++|+.+...+
T Consensus 373 ~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~----~~~~~~~~~~~~g~~eeA~~~~~~~l~~~ 436 (553)
T PRK12370 373 DIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA----AGITKLWITYYHTGIDDAIRLGDELRSQH 436 (553)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh----hHHHHHHHHHhccCHHHHHHHHHHHHHhc
Confidence 34566788899999999999999999998776543 45566666777899999999999887554
No 72
>PRK15331 chaperone protein SicA; Provisional
Probab=96.19 E-value=0.017 Score=50.92 Aligned_cols=89 Identities=10% Similarity=0.063 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCc--hH----------------------------HHHHHHHHH
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF--GG----------------------------EIQIWLAMA 215 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~l--GG----------------------------EAQmwLAtA 215 (276)
++.+..|..|-..|.+|+|..|..+|.-.|-..+.+.+. |. ..-+.++.+
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC 114 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence 345567777777788888877777777776655555442 00 123344455
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcC
Q 023865 216 YEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQA 254 (276)
Q Consensus 216 Yqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILEA 254 (276)
|...|+..+|+..++..+.+.-+..++++|+.+|..|..
T Consensus 115 ~l~l~~~~~A~~~f~~a~~~~~~~~l~~~A~~~L~~l~~ 153 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNERTEDESLRAKALVYLEALKT 153 (165)
T ss_pred HHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHc
Confidence 555555555555566666667788999999999988753
No 73
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.17 E-value=0.017 Score=35.44 Aligned_cols=32 Identities=41% Similarity=0.645 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPR 200 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~ 200 (276)
+..+..|...+..|+|.+|++.|++++...|.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34556666666666666666666666665553
No 74
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.11 E-value=0.027 Score=49.54 Aligned_cols=78 Identities=21% Similarity=0.066 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP-SKNIRRQAADLR 249 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP-d~qVRqQAKqLL 249 (276)
....+-..++.|+|.++.+.|..+....+.+.. ++..++.+|...|+.++|+.+++++.+.+| ||.+.-.=..+|
T Consensus 183 ~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~----~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l 258 (280)
T PF13429_consen 183 RNALAWLLIDMGDYDEAREALKRLLKAAPDDPD----LWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADAL 258 (280)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCC----HCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHH----HHHHHHHHhcccccccccccccccccccccccccccccccccc
Confidence 334466677889999988888888876655554 778899999999999999999999997788 677776655555
Q ss_pred Hhh
Q 023865 250 YIL 252 (276)
Q Consensus 250 yIL 252 (276)
...
T Consensus 259 ~~~ 261 (280)
T PF13429_consen 259 EQA 261 (280)
T ss_dssp T--
T ss_pred ccc
Confidence 443
No 75
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.04 E-value=0.023 Score=58.99 Aligned_cols=61 Identities=10% Similarity=0.046 Sum_probs=41.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 174 aG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
-+..-.+++.|.+|+...+.++...|. ...+++.++++++..|++++|+++|+++...||+
T Consensus 126 ~a~~L~~~~~~eeA~~~~~~~l~~~p~----~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~ 186 (694)
T PRK15179 126 MLRGVKRQQGIEAGRAEIELYFSGGSS----SAREILLEAKSWDEIGQSEQADACFERLSRQHPE 186 (694)
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcCCC----CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC
Confidence 344444555555555555555552222 2258999999999999999999999999977776
No 76
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.94 E-value=0.073 Score=50.31 Aligned_cols=62 Identities=26% Similarity=0.332 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES 234 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~ 234 (276)
....+.....+.+|+|+.+++.|+..+...|-+.+ ++..|..+|..+|+...||..|++|.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~----~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEP----AYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchH----HHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 33455667778899999999999999998888777 899999999999999999999999983
No 77
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.94 E-value=0.048 Score=45.22 Aligned_cols=67 Identities=18% Similarity=0.316 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR--------------HADCIALYKQLE 233 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq--------------~EkAIALCQ~L~ 233 (276)
+...+..|...+..|+|.+|+.+|++++...+.+ ..+...++.+|...|+ .++|+.+++...
T Consensus 72 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~ 147 (172)
T PRK02603 72 SYILYNMGIIYASNGEHDKALEYYHQALELNPKQ----PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAI 147 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999976654 3477788999988888 466777777776
Q ss_pred HhCCC
Q 023865 234 SNHPS 238 (276)
Q Consensus 234 ~~HPd 238 (276)
...|+
T Consensus 148 ~~~p~ 152 (172)
T PRK02603 148 RLAPN 152 (172)
T ss_pred hhCch
Confidence 44444
No 78
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=95.93 E-value=0.033 Score=57.15 Aligned_cols=65 Identities=17% Similarity=-0.027 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
.+..|.....+|++.+|++.|++++...|.+. .+++.|++.|...|+.++|+++|++....+|+.
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~----~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~ 426 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ----GLRIDYASVLQARGWPRAAENELKKAEVLEPRN 426 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence 45677888899999999999999999877774 599999999999999999999999999889985
No 79
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=95.84 E-value=0.053 Score=58.44 Aligned_cols=67 Identities=16% Similarity=0.110 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
....+..|....+.|+|.+|+..|+.++...|.+. .+++.|+.+|...|+.++|+++|+.....+|+
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~----~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~ 675 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS----NYQAALGYALWDSGDIAQSREMLERAHKGLPD 675 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 34455556666666666666666666666444333 35666666666666666666666655545554
No 80
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=95.74 E-value=0.056 Score=48.17 Aligned_cols=63 Identities=22% Similarity=0.163 Sum_probs=54.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (276)
....|...+.+|+|..|++.++++++..|.+ ..+...|+.+|...|+.++|+.+|+......|
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~----~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELNPDD----AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 3456778899999999999999999977666 34888999999999999999999999885554
No 81
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.70 E-value=0.035 Score=52.14 Aligned_cols=62 Identities=21% Similarity=0.280 Sum_probs=55.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 174 aG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
.|+.++..|+|..||..|-++....|.+.. +.+.|.-||+..|+.+.|-.-|.+..+-.|+.
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~----~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~ 167 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWE----AWNLLGAALDQLGRFDEARRAYRQALELAPNE 167 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCChh----hhhHHHHHHHHccChhHHHHHHHHHHHhccCC
Confidence 799999999999999999999996666655 99999999999999999999999988666653
No 82
>PRK14574 hmsH outer membrane protein; Provisional
Probab=95.69 E-value=0.056 Score=57.23 Aligned_cols=76 Identities=12% Similarity=0.194 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLR 249 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLL 249 (276)
..+..|......|+|+.||++|+++++..|.+. .+.+.|+++|...|+.++|+..++++....|. .+.. .-+.
T Consensus 104 ~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~----~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~--~~~~-l~la 176 (822)
T PRK14574 104 GLASAARAYRNEKRWDQALALWQSSLKKDPTNP----DLISGMIMTQADAGRGGVVLKQATELAERDPT--VQNY-MTLS 176 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc--hHHH-HHHH
Confidence 344456677788999999999999999888774 47789999999999999999999999977766 3333 5555
Q ss_pred Hhh
Q 023865 250 YIL 252 (276)
Q Consensus 250 yIL 252 (276)
++.
T Consensus 177 yL~ 179 (822)
T PRK14574 177 YLN 179 (822)
T ss_pred HHH
Confidence 555
No 83
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=95.59 E-value=0.23 Score=47.06 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=43.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (276)
Q Consensus 174 aG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (276)
.+..++.+|+|.+|++.++.+.+..|.+. .+..+++.+|...|+.++|+.++..|.+..+
T Consensus 159 ~a~l~l~~g~~~~Al~~l~~~~~~~P~~~----~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~ 218 (398)
T PRK10747 159 RVRIQLARNENHAARHGVDKLLEVAPRHP----EVLRLAEQAYIRTGAWSSLLDILPSMAKAHV 218 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC
Confidence 36677778888888888888777554443 3777788888888888888888888874443
No 84
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=95.54 E-value=0.079 Score=52.16 Aligned_cols=84 Identities=26% Similarity=0.222 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHH
Q 023865 145 EKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHAD 224 (276)
Q Consensus 145 ~~~~rv~~~L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~Ek 224 (276)
+|.--+..+|++--. |..+.+.|+=..+.++.++.+-+.+.|+.+|.+|++..+...+ |-|.|...+.+.|++++
T Consensus 158 ~KAId~A~~L~k~~~-q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR----Asi~lG~v~~~~g~y~~ 232 (389)
T COG2956 158 EKAIDVAERLVKLGG-QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR----ASIILGRVELAKGDYQK 232 (389)
T ss_pred HHHHHHHHHHHHcCC-ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee----hhhhhhHHHHhccchHH
Confidence 344444444443221 3444555666666666666666666666666666665555444 56666666666666666
Q ss_pred HHHHHHHHH
Q 023865 225 CIALYKQLE 233 (276)
Q Consensus 225 AIALCQ~L~ 233 (276)
|+..++.+.
T Consensus 233 AV~~~e~v~ 241 (389)
T COG2956 233 AVEALERVL 241 (389)
T ss_pred HHHHHHHHH
Confidence 666666666
No 85
>PRK15331 chaperone protein SicA; Provisional
Probab=95.41 E-value=0.052 Score=47.95 Aligned_cols=62 Identities=23% Similarity=0.448 Sum_probs=35.1
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHHHhhhCC---CCCCchH----------HHHHHHHHHHHHcCCh---HHHHHHHHHHH
Q 023865 172 FELGQKAY--GKGMYGRAIEFLEGALTIIP---RPTFFGG----------EIQIWLAMAYEANNRH---ADCIALYKQLE 233 (276)
Q Consensus 172 yeaG~aAL--erGdY~qAIelLE~Al~~~~---~nS~lGG----------EAQmwLAtAYqa~Gq~---EkAIALCQ~L~ 233 (276)
|-.|++|. .+|+|..||..+--+..+.. ...-..| .|+-.+-.|.....+. ++|.++...|.
T Consensus 73 Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~~~~~~l~~~A~~~L~~l~ 152 (165)
T PRK15331 73 YTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNERTEDESLRAKALVYLEALK 152 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHH
Confidence 44566665 46899999999888775433 1122233 3444444455544432 35666666665
No 86
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.37 E-value=0.19 Score=41.38 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHH-------HcCChHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYE-------ANNRHADCIALYK 230 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYq-------a~Gq~EkAIALCQ 230 (276)
+...+..|...+..|+|.+|+..++.++...+.+ +.....++.+|. ..|+.+.|+..|.
T Consensus 72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~----~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 72 SYILYNIGLIHTSNGEHTKALEYYFQALERNPFL----PQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 3467889999999999999999999999875444 356777777777 8888885555554
No 87
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=95.28 E-value=0.069 Score=52.32 Aligned_cols=62 Identities=16% Similarity=0.123 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
+......+...+.+|+|..|++.+.+++...|..-. .+..||.+|...|+.++|+.....+-
T Consensus 234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~----~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 234 SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFE----TWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHH----HHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 566777888899999999999999999996665544 99999999999999999997665443
No 88
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.26 E-value=0.055 Score=33.10 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 207 EIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 207 EAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
++.+.|+.+|...|+.++|+..|++....+|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 57899999999999999999999999977775
No 89
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.25 E-value=0.1 Score=40.32 Aligned_cols=77 Identities=12% Similarity=0.034 Sum_probs=58.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhCCCCCCch-----HHHHHHHHHHHHHcCChHHHHHHHHHHH---HhCCCHHHHHHHHH
Q 023865 176 QKAYGKGMYGRAIEFLEGALTIIPRPTFFG-----GEIQIWLAMAYEANNRHADCIALYKQLE---SNHPSKNIRRQAAD 247 (276)
Q Consensus 176 ~aALerGdY~qAIelLE~Al~~~~~nS~lG-----GEAQmwLAtAYqa~Gq~EkAIALCQ~L~---~~HPd~qVRqQAKq 247 (276)
..++..|+|..|++.|..+..........+ .-+.+.++..+...|+.++|+..++.-+ ....|...=.+|-.
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~ 85 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALS 85 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 568999999999999999997766554433 4677889999999999999999998765 23445555555555
Q ss_pred HHHhh
Q 023865 248 LRYIL 252 (276)
Q Consensus 248 LLyIL 252 (276)
.++.|
T Consensus 86 ~~~~l 90 (94)
T PF12862_consen 86 WLANL 90 (94)
T ss_pred HHHHH
Confidence 55544
No 90
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.19 E-value=0.2 Score=41.37 Aligned_cols=63 Identities=21% Similarity=0.338 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
..+..|..-..-|+|.+|+..|+.++...|. ....+.++..+++++...|+.++|++++-...
T Consensus 40 a~i~lastlr~LG~~deA~~~L~~~~~~~p~-~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 40 ALIQLASTLRNLGRYDEALALLEEALEEFPD-DELNAALRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4677888889999999999999999986654 33456799999999999999999999998755
No 91
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.18 E-value=0.097 Score=52.52 Aligned_cols=74 Identities=18% Similarity=0.103 Sum_probs=63.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLR 249 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLL 249 (276)
....|..++.+|+|.+|+..|++|+..-+ + ..+.++|+.+|.-.|+.++|+..|++-..-.|.....-|.+++.
T Consensus 423 ~~ala~~~~~~g~~~~A~~~l~rAl~L~p--s---~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~~~~~~ 496 (517)
T PRK10153 423 YEILAVQALVKGKTDEAYQAINKAIDLEM--S---WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYWIENLV 496 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHHHhcc
Confidence 33468888899999999999999999765 2 35999999999999999999999988776889888888887764
No 92
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=95.13 E-value=0.059 Score=47.44 Aligned_cols=70 Identities=16% Similarity=0.068 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH-PSKNI 241 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H-Pd~qV 241 (276)
+...+..|....+.|++..|+..|++++...|.+.. +...|+..|...|+.++|+.+++.+.+.. +++.+
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~----~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~ 216 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD----ARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDL 216 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH----HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHH
Confidence 444566777788888888888888888886666555 67777778888888888777777776553 33444
No 93
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.00 E-value=0.43 Score=38.13 Aligned_cols=74 Identities=19% Similarity=0.126 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCch------------------HHHHHHHHHHHHHcCChHHHHHH
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG------------------GEIQIWLAMAYEANNRHADCIAL 228 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lG------------------GEAQmwLAtAYqa~Gq~EkAIAL 228 (276)
.++.....|..+...|+-..+++.|+.++....+.--.| ..+...|+.+|...|+.++|+.+
T Consensus 5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (146)
T PF03704_consen 5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRL 84 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 466678888999999999999999999998887553332 25667788889999999999999
Q ss_pred HHHHHHhCCCHH
Q 023865 229 YKQLESNHPSKN 240 (276)
Q Consensus 229 CQ~L~~~HPd~q 240 (276)
|+.++..+|..+
T Consensus 85 ~~~~l~~dP~~E 96 (146)
T PF03704_consen 85 LQRALALDPYDE 96 (146)
T ss_dssp HHHHHHHSTT-H
T ss_pred HHHHHhcCCCCH
Confidence 999998898755
No 94
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.48 Score=47.13 Aligned_cols=66 Identities=17% Similarity=0.024 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
..++.+.--+..+.|..||++..+++...+.|.. +.+--.+||.+.|+.+.|+..+++.++-.|+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K----ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK----ALYRRGQALLALGEYDLARDDFQKALKLEPSN 324 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh----HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence 3677788889999999999999999998888887 99999999999999999999999999788865
No 95
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.85 E-value=0.067 Score=33.25 Aligned_cols=31 Identities=29% Similarity=0.597 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIP 199 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~ 199 (276)
+..+..|..-+.+|+|.+||..|+.+++..|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4456677777777777777777777776655
No 96
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.53 E-value=0.65 Score=42.18 Aligned_cols=80 Identities=21% Similarity=0.262 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhCC------CCCCch----HHHHHHHHHHHHHcCChH---HHHHHHH
Q 023865 165 RATAQLMFELGQKAYGKG-MYGRAIEFLEGALTIIP------RPTFFG----GEIQIWLAMAYEANNRHA---DCIALYK 230 (276)
Q Consensus 165 ~e~ae~~yeaG~aALerG-dY~qAIelLE~Al~~~~------~nS~lG----GEAQmwLAtAYqa~Gq~E---kAIALCQ 230 (276)
...+...|+.|...+.++ +|..|+.||+.+.+..+ ..++.+ ..+...||+||-..|..+ +|+.+-+
T Consensus 32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~ 111 (278)
T PF08631_consen 32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALR 111 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 456889999999999999 99999999999998842 334444 356678999999988754 5677777
Q ss_pred HHHHhCCC-HHHHHH
Q 023865 231 QLESNHPS-KNIRRQ 244 (276)
Q Consensus 231 ~L~~~HPd-~qVRqQ 244 (276)
.+.+.||+ +.+.-.
T Consensus 112 ~l~~e~~~~~~~~~L 126 (278)
T PF08631_consen 112 LLESEYGNKPEVFLL 126 (278)
T ss_pred HHHHhCCCCcHHHHH
Confidence 78778888 455433
No 97
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.47 E-value=0.079 Score=32.08 Aligned_cols=31 Identities=26% Similarity=0.520 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPR 200 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~ 200 (276)
..|..|...+..|+|.+|++.|+.+++..|.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4789999999999999999999999998875
No 98
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=94.39 E-value=0.17 Score=51.04 Aligned_cols=63 Identities=19% Similarity=0.160 Sum_probs=51.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (276)
Q Consensus 174 aG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (276)
...-..+.|+|.+|+++|+.....+.-.. .+.-..|..|...|+.++|..+|+.|++++|+.-
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~----~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~ 72 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKL----AVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY 72 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 34455788999999999999666444333 3788899999999999999999999999998754
No 99
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.35 E-value=0.099 Score=34.97 Aligned_cols=41 Identities=22% Similarity=0.096 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHH
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAM 214 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAt 214 (276)
..+..|......|++++|++.|+++++..|.+.. +++.|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~----a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPE----AWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH----HHHHhhh
Confidence 4567789999999999999999999998876654 6666654
No 100
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=94.32 E-value=0.22 Score=45.05 Aligned_cols=80 Identities=21% Similarity=0.313 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHHhhhCCC--CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH-HH
Q 023865 168 AQLMFELGQKAYGK-GMYGRAIEFLEGALTIIPR--PTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI-RR 243 (276)
Q Consensus 168 ae~~yeaG~aALer-GdY~qAIelLE~Al~~~~~--nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV-Rq 243 (276)
++...+.|...-.. |+|..||++++.|+..... ......+....++..|...|+.++||.+|+++...+-+..+ +-
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 44555556655566 7999999999999987653 34556788889999999999999999999999855544332 33
Q ss_pred HHHH
Q 023865 244 QAAD 247 (276)
Q Consensus 244 QAKq 247 (276)
.+++
T Consensus 194 ~~~~ 197 (282)
T PF14938_consen 194 SAKE 197 (282)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 4554
No 101
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=0.49 Score=48.63 Aligned_cols=70 Identities=20% Similarity=0.166 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
+.++..-..|..+|..|+|+.||.++.+++...|.+-. ..=-.|-||-..|....|++-|+.-++-+|+.
T Consensus 356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~----lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~ 425 (539)
T KOG0548|consen 356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR----LYSNRAACYLKLGEYPEALKDAKKCIELDPNF 425 (539)
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH----HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH
Confidence 34666667799999999999999999999997765554 44557888999999999999888888666654
No 102
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.87 E-value=0.06 Score=35.11 Aligned_cols=33 Identities=21% Similarity=0.163 Sum_probs=28.2
Q ss_pred HHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHH
Q 023865 191 LEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIA 227 (276)
Q Consensus 191 LE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIA 227 (276)
++++++..|.+.. +...|+.+|...|+.++|++
T Consensus 2 y~kAie~~P~n~~----a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAE----AYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHH----HHHHHHHHHHHCcCHHhhcC
Confidence 5678887776665 99999999999999999974
No 103
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=93.66 E-value=0.14 Score=46.19 Aligned_cols=69 Identities=25% Similarity=0.213 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC--CCCCchHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEAN-NRHADCIALYKQLESNH 236 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~--~nS~lGGEAQmwLAtAYqa~-Gq~EkAIALCQ~L~~~H 236 (276)
+-..|..+-..|.++++..||..|+.|+...- ......+++..-++..|... |+.++||.+|++-.+-+
T Consensus 74 Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y 145 (282)
T PF14938_consen 74 AAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELY 145 (282)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 44567778888999999999999999998654 33455678899999999999 99999999999876433
No 104
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=93.59 E-value=0.78 Score=42.91 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=37.0
Q ss_pred HHHhcCCHHHHHHHHHHHhhhCC-CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHH
Q 023865 177 KAYGKGMYGRAIEFLEGALTIIP-RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRR 243 (276)
Q Consensus 177 aALerGdY~qAIelLE~Al~~~~-~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRq 243 (276)
+-|.-|+...|...||+..+..| ..|+ --.+.++++|.+.|+..+|-+-++.+++.+|+++-+-
T Consensus 133 Aqfa~~~~A~a~~tLe~l~e~~pa~r~p---d~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~ 197 (251)
T COG4700 133 AQFAIQEFAAAQQTLEDLMEYNPAFRSP---DGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARI 197 (251)
T ss_pred HHHhhccHHHHHHHHHHHhhcCCccCCC---CchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHH
Confidence 33334444444444444443333 1222 2456677777777777777777777777777777654
No 105
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=93.56 E-value=0.3 Score=48.27 Aligned_cols=71 Identities=21% Similarity=0.290 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI 241 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV 241 (276)
+....-.|.-++.+|+|..||+.||.+++..+... +++---|..||...|+.++.+..-+.-...++++.+
T Consensus 214 vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl---~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 214 VRASIILGRVELAKGDYQKAVEALERVLEQNPEYL---SEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence 44567789999999999999999999998655443 578899999999999999998877776656666554
No 106
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.19 E-value=0.14 Score=40.16 Aligned_cols=52 Identities=13% Similarity=0.053 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR 221 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq 221 (276)
....|..+...+..|+|..|++.|-.++...+.... +.++-.|+..+...|.
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~--~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRDRDYED--DAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCC--CHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccc--cHHHHHHHHHHHHcCC
Confidence 455666666666666666666666666654433333 2333333333333333
No 107
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.04 E-value=0.25 Score=30.44 Aligned_cols=31 Identities=32% Similarity=0.555 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIP 199 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~ 199 (276)
+..+..|..-...|+|..|+..|+++++..|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4456667777777777777777777776555
No 108
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=93.01 E-value=0.2 Score=53.87 Aligned_cols=61 Identities=28% Similarity=0.414 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 172 yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
|..|.=-.+.|.|.+|++.+++++...|.+.+ +++-|++-|+..|++++|...-.++. .||
T Consensus 453 ~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D----~Ri~Lasl~~~~g~~EkalEtL~~~~--~~D 513 (895)
T KOG2076|consen 453 YKLARCYMELGEYEEAIEFYEKVLILAPDNLD----ARITLASLYQQLGNHEKALETLEQII--NPD 513 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCchh----hhhhHHHHHHhcCCHHHHHHHHhccc--CCC
Confidence 44455555666666666666666665555555 56666666666666666655555554 455
No 109
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=92.81 E-value=0.25 Score=34.34 Aligned_cols=29 Identities=24% Similarity=0.242 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 210 IWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 210 mwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
|-++.+|...|+.++|+.+|++++..+|+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~ 29 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPD 29 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTT
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 46899999999999999999999988885
No 110
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.75 E-value=0.83 Score=44.13 Aligned_cols=75 Identities=21% Similarity=0.257 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHH
Q 023865 149 RVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIAL 228 (276)
Q Consensus 149 rv~~~L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIAL 228 (276)
.||+=|.+..-. .-+..+..+..+++.|+|..|...|..++...+.+ +.+.+.||.+|-..|+.+.|-++
T Consensus 121 qlr~~ld~~~~~------~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~----~~~~~~la~~~l~~g~~e~A~~i 190 (304)
T COG3118 121 QLRQFLDKVLPA------EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN----SEAKLLLAECLLAAGDVEAAQAI 190 (304)
T ss_pred HHHHHHHHhcCh------HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc----chHHHHHHHHHHHcCChHHHHHH
Confidence 355555555552 22336778899999999999999999999977776 45999999999999999999999
Q ss_pred HHHHH
Q 023865 229 YKQLE 233 (276)
Q Consensus 229 CQ~L~ 233 (276)
+-+|-
T Consensus 191 L~~lP 195 (304)
T COG3118 191 LAALP 195 (304)
T ss_pred HHhCc
Confidence 98876
No 111
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=92.72 E-value=1.3 Score=39.83 Aligned_cols=67 Identities=18% Similarity=0.141 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC--CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~--~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
.....++.|..-|..|+|+.|+.+|++++.... .=..+-..+...|..++...|+.+..+++|=+|.
T Consensus 177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 177 ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 355678899999999999999999999975443 2256667899999999999999999999999887
No 112
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=92.48 E-value=0.46 Score=51.26 Aligned_cols=68 Identities=16% Similarity=0.220 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI 241 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV 241 (276)
.++++-.+-.+|.+|++.+|..+|..++.+.|.+.- +...|++.|+..|++++|.... .|. .|-+|+-
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~----ay~tL~~IyEqrGd~eK~l~~~-llA-AHL~p~d 206 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPI----AYYTLGEIYEQRGDIEKALNFW-LLA-AHLNPKD 206 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchh----hHHHHHHHHHHcccHHHHHHHH-HHH-HhcCCCC
Confidence 456788888899999999999999999998887765 9999999999999999997643 333 5777654
No 113
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=92.41 E-value=0.37 Score=41.22 Aligned_cols=53 Identities=26% Similarity=0.243 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHAD 224 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~Ek 224 (276)
+...++.++++|..|+|+-|++++.-++...|.+. +++-++|.||.+.|....
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~----~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNE----EARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-H----HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHHHHhcc
Confidence 56789999999999999999999999998666554 499999999998886654
No 114
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.11 E-value=0.5 Score=29.23 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 207 EIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 207 EAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
++.+.++.+|...|+.++|+..|++-++-.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 57889999999999999999999998866664
No 115
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=91.87 E-value=0.75 Score=36.74 Aligned_cols=63 Identities=19% Similarity=0.084 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHH
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALY 229 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALC 229 (276)
-+++...+.|+..|.+-...+||....+++...... +.-=.+.=+|++||+--|+..++++..
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~-~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDR-EDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999865542 223366678999999999999998764
No 116
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=91.73 E-value=0.42 Score=26.02 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865 208 IQIWLAMAYEANNRHADCIALYKQLESNHP 237 (276)
Q Consensus 208 AQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (276)
+.+.++.+|...|+.++|+..++..++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 455666677777777777777666653333
No 117
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=91.64 E-value=1.8 Score=41.46 Aligned_cols=131 Identities=19% Similarity=0.207 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---
Q 023865 105 MRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRA--TAQLMFELGQKAY--- 179 (276)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~~a~~~a~~~e--~ae~~yeaG~aAL--- 179 (276)
+.-+...+--..+.+..+..||.++..+-.+.++=.==-+-|-..=+-..+..|=..|.|+. ..+...-.|.+-+
T Consensus 125 ~~~~~a~~~~~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a 204 (287)
T COG4235 125 LADPLAQPPAEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQA 204 (287)
T ss_pred hhcccccCCCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 33344444445566666777777777666554443333333433333444444444454442 1222222222222
Q ss_pred hcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 180 GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 180 erGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
.+-+=.++..+|.+++...+.+.+ ++++|+++|.-+|+..+|++..+.|.+.-|..
T Consensus 205 ~~~~ta~a~~ll~~al~~D~~~ir----al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 205 GQQMTAKARALLRQALALDPANIR----ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred CCcccHHHHHHHHHHHhcCCccHH----HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 233455677888888886666655 99999999999999999999999999766643
No 118
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.51 E-value=0.33 Score=31.43 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=21.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 209 QIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 209 QmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
...|+.+|...|+.++||.+|++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4578999999999999999999843
No 119
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=91.05 E-value=0.88 Score=46.36 Aligned_cols=59 Identities=25% Similarity=0.317 Sum_probs=35.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (276)
Q Consensus 175 G~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (276)
|...++.+++.+|++.|.+++...|.... .++-++.+|...|+.++||.+-+..+...|
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l~P~~~~----l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALALDPNSPL----LQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCccH----HHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 44556666666666666666665554422 566666666666666666666666653333
No 120
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.80 E-value=0.97 Score=46.58 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchH------------------------------HHHHHHHHHHHHcC
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGG------------------------------EIQIWLAMAYEANN 220 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGG------------------------------EAQmwLAtAYqa~G 220 (276)
.-+.|-+||..|||.+||.+|..++.+.|.|.-++. .+..-+.-|..+.|
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 446799999999999999999999999998755543 45566778899999
Q ss_pred ChHHHHHHHHHHHHhCCCHHH
Q 023865 221 RHADCIALYKQLESNHPSKNI 241 (276)
Q Consensus 221 q~EkAIALCQ~L~~~HPd~qV 241 (276)
+.++|+.-|..=.+.-|+-.+
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~~ 105 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNKQ 105 (539)
T ss_pred cHHHHHHHHHHHhhcCCchHH
Confidence 999999999876546666543
No 121
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=90.77 E-value=1.1 Score=44.86 Aligned_cols=63 Identities=24% Similarity=0.265 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
+..-..+..|.-+|.++.|++|-++||.+++.-+.. ....||+-||.+.|+.++|-..++.-.
T Consensus 326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-----~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 326 EDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-----SDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-----hhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 345678889999999999999999999998855443 367999999999999999998887643
No 122
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=90.61 E-value=1.3 Score=35.45 Aligned_cols=56 Identities=25% Similarity=0.160 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCC
Q 023865 162 AERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR 221 (276)
Q Consensus 162 a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq 221 (276)
..+...+...+..|..|+.-|||..|-..+.++... .+.-.-..+.-|+|=+..||
T Consensus 53 ~rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~----~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 53 RRRRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKL----SDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHcCC
Confidence 445566888999999999999999999999998664 22222355556666666664
No 123
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.41 E-value=1 Score=45.67 Aligned_cols=66 Identities=21% Similarity=0.179 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
.+..=+.|-.||.+|.|+.|-+.+..++.+.|.+...-....+-.|+++-..|+..+||+-|..-.
T Consensus 249 le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 249 LEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred HHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 344556799999999999999999999999999998888888889999999999999999998766
No 124
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.10 E-value=5.2 Score=37.82 Aligned_cols=88 Identities=25% Similarity=0.132 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHH
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQA 245 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQA 245 (276)
..|...+..|.--+++|.|-.||--++.+++. -++|+.--++.++|.-||...|=++.|-..-+-|....|+.+ |.
T Consensus 165 ~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~---~~ 240 (254)
T COG4105 165 ALAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ---WY 240 (254)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc---ch
Confidence 44667888899999999999999999999986 566777789999999999999999999999999998888887 55
Q ss_pred HHHHHhhcCCCC
Q 023865 246 ADLRYILQAPKL 257 (276)
Q Consensus 246 KqLLyILEAPkL 257 (276)
+.--.++..+.|
T Consensus 241 ~~~~~~~~~~~~ 252 (254)
T COG4105 241 KDAYRLLQRGGL 252 (254)
T ss_pred hhhhhccccccc
Confidence 554444444443
No 125
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=89.99 E-value=1.9 Score=47.74 Aligned_cols=71 Identities=15% Similarity=0.148 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR-HADCIALYKQLESNHPSKNIR 242 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq-~EkAIALCQ~L~~~HPd~qVR 242 (276)
+++.+..++.|+...+|..||++.++++...|.|+. +++.|-.||-.+|+ .++|-.-|..-.+--||.-+.
T Consensus 2 vK~aLK~Ak~al~nk~YeealEqskkvLk~dpdNYn----A~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLA 73 (1238)
T KOG1127|consen 2 VKTALKSAKDALRNKEYEEALEQSKKVLKEDPDNYN----AQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLA 73 (1238)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcch----hhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHH
Confidence 467899999999999999999999999999999998 89999999999999 999999998877666765544
No 126
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=89.66 E-value=0.75 Score=50.27 Aligned_cols=55 Identities=20% Similarity=0.170 Sum_probs=27.2
Q ss_pred HHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 178 AYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 178 ALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
-|-+|+|..|..+-+.++... .+...=.+..+||+++|.+.|+.++|...|++=+
T Consensus 280 fyfK~dy~~v~~la~~ai~~t-~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 280 FYFKKDYERVWHLAEHAIKNT-ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL 334 (1018)
T ss_pred HhhcccHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 344555555555555555422 2222223445555555555555555555555544
No 127
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=89.57 E-value=1.9 Score=31.33 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 023865 208 IQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (276)
Q Consensus 208 AQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyIL 252 (276)
-.++||.||.+.|+..+|...|..|.+..|+-. ||+.|...+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~---Qa~~L~~~i 44 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR---QAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H---HHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH---HHHHHHHHH
Confidence 457899999999999999999999998888864 555555544
No 128
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=89.54 E-value=0.74 Score=24.99 Aligned_cols=30 Identities=33% Similarity=0.604 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIP 199 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~ 199 (276)
..+..|...+..|+|..|+..|..++...+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 356789999999999999999999987554
No 129
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.02 E-value=0.99 Score=27.70 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865 207 EIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (276)
Q Consensus 207 EAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (276)
++.+.++..|...|+.++|+..+++..+-.|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5788999999999999999999999875444
No 130
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=88.60 E-value=1.1 Score=37.68 Aligned_cols=39 Identities=26% Similarity=0.387 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCC
Q 023865 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF 203 (276)
Q Consensus 165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~ 203 (276)
..-+....+.|+..+.+|+|..|+.+|-.|+..++..+.
T Consensus 60 e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~ 98 (121)
T PF02064_consen 60 ERFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAE 98 (121)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHH
Confidence 344778899999999999999999999999997776654
No 131
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=88.56 E-value=2.3 Score=42.49 Aligned_cols=78 Identities=19% Similarity=0.198 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCch-----------HHHHHHHHHHHHHcCChHHHHHHHHH
Q 023865 163 ERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG-----------GEIQIWLAMAYEANNRHADCIALYKQ 231 (276)
Q Consensus 163 ~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lG-----------GEAQmwLAtAYqa~Gq~EkAIALCQ~ 231 (276)
++++.|...=+.|-.-|++|+|..|+..++.|+.........- .-+.+-||++|-..++..+||..|-+
T Consensus 203 e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~k 282 (397)
T KOG0543|consen 203 ERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNK 282 (397)
T ss_pred HHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Confidence 4455555566677778888888888888888776665322221 13556789999999999999999998
Q ss_pred HHHhCCCHHH
Q 023865 232 LESNHPSKNI 241 (276)
Q Consensus 232 L~~~HPd~qV 241 (276)
.. .+-...+
T Consensus 283 vL-e~~~~N~ 291 (397)
T KOG0543|consen 283 VL-ELDPNNV 291 (397)
T ss_pred HH-hcCCCch
Confidence 77 4544443
No 132
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=88.54 E-value=0.97 Score=45.97 Aligned_cols=59 Identities=22% Similarity=0.178 Sum_probs=52.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhhCC----CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 023865 174 LGQKAYGKGMYGRAIEFLEGALTIIP----RPTFFGGEIQIWLAMAYEANNRHADCIALYKQL 232 (276)
Q Consensus 174 aG~aALerGdY~qAIelLE~Al~~~~----~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L 232 (276)
.|..-+.++.|.+||-+|++|+++.. ...+.-+-+..-|+.+|.+.|+..+|-.+|+.-
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A 309 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERA 309 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 56777889999999999999998766 778888999999999999999999998888753
No 133
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.52 E-value=1 Score=28.17 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 207 EIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 207 EAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
.++..|+.+|...|+.++|+.++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 367789999999999999999988876
No 134
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.27 E-value=0.71 Score=28.25 Aligned_cols=24 Identities=21% Similarity=0.183 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHH
Q 023865 207 EIQIWLAMAYEANNRHADCIALYK 230 (276)
Q Consensus 207 EAQmwLAtAYqa~Gq~EkAIALCQ 230 (276)
.+.+.|+.+|...|+.++|.++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467889999999999999988876
No 135
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.65 E-value=7.5 Score=34.39 Aligned_cols=85 Identities=14% Similarity=-0.033 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHH
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQA 245 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQA 245 (276)
...+..+-.|.-.+.+|+|..|+.+|..+.. ..+.++ -+.-.||.++...|+..==.--.+-|. ..+++..+.=.
T Consensus 42 ~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~-~~~~~p---~~kALlA~CL~~~~D~~Wr~~A~evle-~~~d~~a~~Lv 116 (160)
T PF09613_consen 42 EFPELDLFDGWLHIVRGDWDDALRLLRELEE-RAPGFP---YAKALLALCLYALGDPSWRRYADEVLE-SGADPDARALV 116 (160)
T ss_pred CchHHHHHHHHHHHHhCCHHHHHHHHHHHhc-cCCCCh---HHHHHHHHHHHHcCChHHHHHHHHHHh-cCCChHHHHHH
Confidence 3456677789999999999999999999766 334444 377888889988888764444444555 78899998888
Q ss_pred HHHHHhhcCC
Q 023865 246 ADLRYILQAP 255 (276)
Q Consensus 246 KqLLyILEAP 255 (276)
+.|+.+=+-+
T Consensus 117 ~~Ll~~~~~~ 126 (160)
T PF09613_consen 117 RALLARADLE 126 (160)
T ss_pred HHHHHhcccc
Confidence 8887664433
No 136
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=87.53 E-value=1.7 Score=43.78 Aligned_cols=69 Identities=17% Similarity=0.182 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
..++.+..+.+.+.|..|++--|+++...|.-+..--.+.-.|.++|..-|+.-+||.-|....+--|+
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~ 339 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD 339 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch
Confidence 377888888889999999998888888666655544455566777888888888888888777744443
No 137
>PRK04841 transcriptional regulator MalT; Provisional
Probab=87.39 E-value=2.3 Score=43.39 Aligned_cols=65 Identities=12% Similarity=-0.004 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCC--chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 023865 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTF--FGGEIQIWLAMAYEANNRHADCIALYKQLESNH 236 (276)
Q Consensus 172 yeaG~aALerGdY~qAIelLE~Al~~~~~nS~--lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H 236 (276)
...|.....+|+|.+|+.+|+.++........ .=..+.++++.+|...|+.++|+...++-..-.
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 46788889999999999999999986543322 224688999999999999999988877665333
No 138
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=87.26 E-value=5.6 Score=38.47 Aligned_cols=67 Identities=18% Similarity=0.228 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHH--cCChHHHHHHHHHHHHhCCC
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA--NNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa--~Gq~EkAIALCQ~L~~~HPd 238 (276)
......+..+|.+++|+.|.++|+.++...+..-. -+..-.|+.+|.+ ..++.+|....+.+. .+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~-~~~~ 200 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLL-KRDK 200 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHhh
Confidence 44567788999999999999999999875333322 4677778888886 778999999999888 4433
No 139
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.00 E-value=1.8 Score=26.97 Aligned_cols=32 Identities=34% Similarity=0.440 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIP 199 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~ 199 (276)
+......|...+.+|+|.+|+.+++.++....
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 45677889999999999999999999987543
No 140
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.89 E-value=3.8 Score=37.25 Aligned_cols=64 Identities=20% Similarity=0.266 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 023865 182 GMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR-----------HADCIALYKQLESNHPSKNIRRQAADLR 249 (276)
Q Consensus 182 GdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq-----------~EkAIALCQ~L~~~HPd~qVRqQAKqLL 249 (276)
..|.+||+.|+.|+.+.|.... +.+.|..||...|. .++|...+++-.+.-|+.++-+.+=++-
T Consensus 49 ~miedAisK~eeAL~I~P~~hd----Alw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 49 KMIEDAISKFEEALKINPNKHD----ALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HH----HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCchHH----HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 3678899999999998777665 89999999988776 5778888888888889988887776653
No 141
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=86.75 E-value=2.8 Score=39.05 Aligned_cols=75 Identities=23% Similarity=0.212 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHhCC-CHHHHHH
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRH-ADCIALYKQLESNHP-SKNIRRQ 244 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~-EkAIALCQ~L~~~HP-d~qVRqQ 244 (276)
+.....-.+..-+.+|+|..|.+.|+.++...+. -..+.+-|++++.-.|+. +.+-.+-.+|...|| +|-+...
T Consensus 200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~----~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~ 275 (290)
T PF04733_consen 200 TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN----DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDL 275 (290)
T ss_dssp SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC----HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC----CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHH
Confidence 3455556677888899999999999988864433 245888888888888888 666678888887788 5555554
Q ss_pred H
Q 023865 245 A 245 (276)
Q Consensus 245 A 245 (276)
+
T Consensus 276 ~ 276 (290)
T PF04733_consen 276 A 276 (290)
T ss_dssp H
T ss_pred H
Confidence 4
No 142
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.69 E-value=1.6 Score=28.23 Aligned_cols=27 Identities=37% Similarity=0.592 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhh
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTI 197 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~ 197 (276)
....|.....+|+|++||+++++++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356788899999999999999996643
No 143
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=86.34 E-value=8.5 Score=36.22 Aligned_cols=91 Identities=22% Similarity=0.192 Sum_probs=69.1
Q ss_pred HHHHHHHHHH--HHHHHHHH---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcC
Q 023865 146 KRMRVRRELE--KVAKEQAE---RRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN 220 (276)
Q Consensus 146 ~~~rv~~~L~--~~a~~~a~---~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~G 220 (276)
--|+++++|. .--+|.++ +-.+.+..|..|.++.+-|+|.+|+.+++++++-.=...+ ++.+.||.|.-+.|
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~---a~lLglA~Aqfa~~ 138 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDA---AMLLGLAQAQFAIQ 138 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCH---HHHHHHHHHHHhhc
Confidence 3455666653 22233333 3356788999999999999999999999999874444444 68889999999999
Q ss_pred ChHHHHHHHHHHHHhCCCH
Q 023865 221 RHADCIALYKQLESNHPSK 239 (276)
Q Consensus 221 q~EkAIALCQ~L~~~HPd~ 239 (276)
+...|..+..+|-..||..
T Consensus 139 ~~A~a~~tLe~l~e~~pa~ 157 (251)
T COG4700 139 EFAAAQQTLEDLMEYNPAF 157 (251)
T ss_pred cHHHHHHHHHHHhhcCCcc
Confidence 9999999999998666543
No 144
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=86.26 E-value=9.9 Score=27.58 Aligned_cols=62 Identities=29% Similarity=0.419 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHH-HHHHcCChHHHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAM-AYEANNRHADCIALYKQLE 233 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAt-AYqa~Gq~EkAIALCQ~L~ 233 (276)
....+..|......++|..++..+..+....+.+ .....+... +|...|+.++|+..++...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 157 (291)
T COG0457 95 AEALLNLGLLLEALGKYEEALELLEKALALDPDP----DLAEALLALGALYELGDYEEALELYEKAL 157 (291)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc----chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445556666666666777777777766544433 124444444 6777777777777777654
No 145
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=85.68 E-value=2.5 Score=46.38 Aligned_cols=72 Identities=13% Similarity=0.218 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (276)
..+...|..|..-..+|||..|-.++-.++...+.+.-+ ..+.|++-|...|+.+.|+..+.++.++.|+-.
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l---~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~ 376 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL---PLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNY 376 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc---cccchhHHHHHhchHHHHHHHHHHHHHhCcchH
Confidence 347789999999999999999999999999877777444 777888889999999999999999998888754
No 146
>PRK04841 transcriptional regulator MalT; Provisional
Probab=85.63 E-value=7.4 Score=39.79 Aligned_cols=64 Identities=13% Similarity=0.026 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCC----CchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT----FFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS----~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
..+..|...+.+|+|..|.++++.++....... .....+...++.+|...|+.++|.++|+...
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al 600 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGL 600 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH
Confidence 345567788999999999999999887654321 2233445567778888899999988888764
No 147
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.58 E-value=1.6 Score=45.23 Aligned_cols=67 Identities=18% Similarity=0.338 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
....|..|+--|--++|..||+=|++++.+.|.+-- +++.|+-|...+++.+.+...++.-++++|+
T Consensus 394 ~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~----~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~ 460 (606)
T KOG0547|consen 394 PDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAY----AYIQLCCALYRQHKIAESMKTFEEAKKKFPN 460 (606)
T ss_pred CchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 345788899999999999999999999997776655 8899999999999999999999999999997
No 148
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.49 E-value=7.9 Score=34.27 Aligned_cols=85 Identities=16% Similarity=0.108 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq 247 (276)
....+-.|.-.+.+|+|..|+..|..+.. ...+++. +.-.||.++.+.|+-.==.--..-|. ..++++...-.+.
T Consensus 44 ~e~d~~dg~l~i~rg~w~eA~rvlr~l~~-~~~~~p~---~kAL~A~CL~al~Dp~Wr~~A~~~le-~~~~~~a~~Lv~a 118 (153)
T TIGR02561 44 KELDMFDGWLLIARGNYDEAARILRELLS-SAGAPPY---GKALLALCLNAKGDAEWHVHADEVLA-RDADADAVALVRA 118 (153)
T ss_pred cccchhHHHHHHHcCCHHHHHHHHHhhhc-cCCCchH---HHHHHHHHHHhcCChHHHHHHHHHHH-hCCCHhHHHHHHH
Confidence 44556678899999999999999999766 3444443 67788899999998775555556666 8889998888888
Q ss_pred HHHhhcCCCC
Q 023865 248 LRYILQAPKL 257 (276)
Q Consensus 248 LLyILEAPkL 257 (276)
|+.+++.|.-
T Consensus 119 l~g~~~~~~s 128 (153)
T TIGR02561 119 LLGAQQPPAS 128 (153)
T ss_pred HhccccCCcc
Confidence 8877777653
No 149
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.36 E-value=2.9 Score=43.45 Aligned_cols=66 Identities=21% Similarity=0.283 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (276)
|...=..|-..|..|.|.+||.++..|++.+|.-.-+ .--.+-+|...|+.++-|.-|-+-..-.|
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiF----YsNraAcY~~lgd~~~Vied~TkALEl~P 180 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIF----YSNRAACYESLGDWEKVIEDCTKALELNP 180 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchh----hhhHHHHHHHHhhHHHHHHHHHHHhhcCc
Confidence 3344567999999999999999999999988874332 22356677777777777777765543333
No 150
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=84.95 E-value=26 Score=35.28 Aligned_cols=62 Identities=16% Similarity=0.131 Sum_probs=54.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH 236 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H 236 (276)
.+..+...+.+|+|..|...+..+..+.|.+.. +.-..+.+|...|+-+...++-.+|.+.+
T Consensus 156 ~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~----vlrLa~r~y~~~g~~~~ll~~l~~L~ka~ 217 (400)
T COG3071 156 ELTRARLLLNRRDYPAARENVDQLLEMTPRHPE----VLRLALRAYIRLGAWQALLAILPKLRKAG 217 (400)
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhCcCChH----HHHHHHHHHHHhccHHHHHHHHHHHHHcc
Confidence 566678889999999999999999997776665 99999999999999999999999998554
No 151
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=84.59 E-value=12 Score=37.97 Aligned_cols=113 Identities=20% Similarity=0.186 Sum_probs=76.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023865 100 DWEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAY 179 (276)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~~a~~~a~~~e~ae~~yeaG~aAL 179 (276)
||-...-+|---.-.|-+||.-+.....-+..+.+. + +..-|+++-.-..+-....+..+.|+
T Consensus 104 DF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~-----~------------~~~eaqskl~~~~e~~~l~~ql~s~~ 166 (504)
T KOG0624|consen 104 DFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN-----G------------LVLEAQSKLALIQEHWVLVQQLKSAS 166 (504)
T ss_pred cHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc-----c------------hhHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 444444444444555667777666666666666652 2 22223333333444555667778899
Q ss_pred hcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 180 GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 180 erGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
..|||..||+++..+++..+=.- ..+..=|.+|.+-|+..+||.=-+...
T Consensus 167 ~~GD~~~ai~~i~~llEi~~Wda----~l~~~Rakc~i~~~e~k~AI~Dlk~as 216 (504)
T KOG0624|consen 167 GSGDCQNAIEMITHLLEIQPWDA----SLRQARAKCYIAEGEPKKAIHDLKQAS 216 (504)
T ss_pred cCCchhhHHHHHHHHHhcCcchh----HHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99999999999999999655444 477888899999999999998666554
No 152
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.42 E-value=17 Score=34.64 Aligned_cols=75 Identities=19% Similarity=0.134 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRY 250 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLy 250 (276)
..+.|.+-+..+.+..||.-.-+++++-|.+- .|..--|.||...-..++|+.=|++|... +|..+ +|+.-..
T Consensus 137 y~Nraaa~iKl~k~e~aI~dcsKaiel~pty~----kAl~RRAeayek~ek~eealeDyKki~E~--dPs~~-ear~~i~ 209 (271)
T KOG4234|consen 137 YSNRAAALIKLRKWESAIEDCSKAIELNPTYE----KALERRAEAYEKMEKYEEALEDYKKILES--DPSRR-EAREAIA 209 (271)
T ss_pred HhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CcchH-HHHHHHH
Confidence 34455555666666666666666666444333 35555688999999999999999999844 44444 6666544
Q ss_pred hh
Q 023865 251 IL 252 (276)
Q Consensus 251 IL 252 (276)
-|
T Consensus 210 rl 211 (271)
T KOG4234|consen 210 RL 211 (271)
T ss_pred hc
Confidence 44
No 153
>PRK11619 lytic murein transglycosylase; Provisional
Probab=84.25 E-value=8.2 Score=40.17 Aligned_cols=69 Identities=20% Similarity=0.135 Sum_probs=49.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 023865 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLR 249 (276)
Q Consensus 175 G~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLL 249 (276)
-..|+..|++.....++... +.....-++.++|+++|+.+.|+.++|..+|+.+. + +..=--.-|..-|
T Consensus 319 ~r~Al~~~dw~~~~~~i~~L----~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a-~-~~~fYG~LAa~~L 387 (644)
T PRK11619 319 VRMALGTGDRRGLNTWLARL----PMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM-Q-QRGFYPMVAAQRL 387 (644)
T ss_pred HHHHHHccCHHHHHHHHHhc----CHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh-c-CCCcHHHHHHHHc
Confidence 34688899998877777764 32223346799999999999999999999999997 3 4433334444443
No 154
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=83.90 E-value=2.7 Score=29.43 Aligned_cols=34 Identities=29% Similarity=0.435 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR 200 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~ 200 (276)
.....+..|..-+..|+|..|++.|+.+++..|.
T Consensus 28 ~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 28 DPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 3566788999999999999999999999997763
No 155
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=83.87 E-value=4.9 Score=41.59 Aligned_cols=80 Identities=20% Similarity=0.194 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH---HHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK---NIRRQ 244 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~---qVRqQ 244 (276)
.++.+++|+..|.+-+..+..-.+=... ....+....-+..-||++....|+.++||..++.|.+-+|.- .|+.+
T Consensus 223 ~rqAvkAgE~~lg~s~~~~~~g~~~e~~--~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~Iren 300 (539)
T PF04184_consen 223 LRQAVKAGEASLGKSQFLQHHGHFWEAW--HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIREN 300 (539)
T ss_pred HHHHHHHHHHhhchhhhhhcccchhhhh--hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHH
Confidence 4455666666666543333222221111 223444445566779999999999999999999998567753 35544
Q ss_pred HHHHH
Q 023865 245 AADLR 249 (276)
Q Consensus 245 AKqLL 249 (276)
--..|
T Consensus 301 Lie~L 305 (539)
T PF04184_consen 301 LIEAL 305 (539)
T ss_pred HHHHH
Confidence 33333
No 156
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=83.86 E-value=4.1 Score=36.02 Aligned_cols=77 Identities=21% Similarity=0.209 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHhc---CCHHHHHHHHHHHhh-hCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHH
Q 023865 167 TAQLMFELGQKAYGK---GMYGRAIEFLEGALT-IIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIR 242 (276)
Q Consensus 167 ~ae~~yeaG~aALer---GdY~qAIelLE~Al~-~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVR 242 (276)
+.+..|+-+-+.... -+-++-|.+||..+. .+|...+ +--++||.+|...|+.++|+.+|..|.++-|+..
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rR---e~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~-- 105 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRR---ECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR-- 105 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccch---hhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH--
Confidence 345566666555544 456788999999996 5555555 5789999999999999999999999997777764
Q ss_pred HHHHHHH
Q 023865 243 RQAADLR 249 (276)
Q Consensus 243 qQAKqLL 249 (276)
||..|-
T Consensus 106 -Qa~~Lk 111 (149)
T KOG3364|consen 106 -QALELK 111 (149)
T ss_pred -HHHHHH
Confidence 444443
No 157
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=83.37 E-value=2.4 Score=29.46 Aligned_cols=33 Identities=36% Similarity=0.469 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhCC
Q 023865 167 TAQLMFELGQKAYGKG-MYGRAIEFLEGALTIIP 199 (276)
Q Consensus 167 ~ae~~yeaG~aALerG-dY~qAIelLE~Al~~~~ 199 (276)
.+...+..|..-+.+| +|.+|++.++++++..|
T Consensus 36 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 36 NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3557899999999999 79999999999998765
No 158
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.32 E-value=14 Score=35.19 Aligned_cols=71 Identities=17% Similarity=0.148 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHH--HHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIW--LAMAYEANNRHADCIALYKQLESNHP 237 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmw--LAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (276)
+.+..+-..|-..|..|+|-.|...+-.|+..+|..+.. .+..++ =|-|....+..+.||.-|-+-+.-+|
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e-~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p 165 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTE-ERSILYSNRAAALIKLRKWESAIEDCSKAIELNP 165 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHH-HHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc
Confidence 334455668999999999999999999999999987662 222222 26789999999999999988875666
No 159
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=83.22 E-value=13 Score=29.17 Aligned_cols=49 Identities=22% Similarity=0.166 Sum_probs=39.6
Q ss_pred HHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 187 AIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 187 AIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
.|+-|++.++..|.+. ++++.||.+|...|+.+.|+..+-.+.+++|+.
T Consensus 7 ~~~al~~~~a~~P~D~----~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDL----DARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-H----HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 4778888888666544 599999999999999999999999999777665
No 160
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=83.08 E-value=15 Score=26.60 Aligned_cols=58 Identities=24% Similarity=0.375 Sum_probs=36.9
Q ss_pred HHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 178 AYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 178 ALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
....|+|..|+..+..++...+.. ...+...+...|...|+.++|+..+.......|.
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDD---DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCccc---chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 445667777777777766655443 3346666777777777777777777776644444
No 161
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=82.80 E-value=9.1 Score=37.82 Aligned_cols=71 Identities=14% Similarity=0.026 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHH
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAA 246 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAK 246 (276)
.+-.+...+..++..+||+++..++...|.+ ..+....|..|...|+.+.|+.++++.+ ...-.+.+-|+.
T Consensus 203 ~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d----~~LL~~Qa~fLl~k~~~~lAL~iAk~av-~lsP~~f~~W~~ 273 (395)
T PF09295_consen 203 AVLLARVYLLMNEEVEAIRLLNEALKENPQD----SELLNLQAEFLLSKKKYELALEIAKKAV-ELSPSEFETWYQ 273 (395)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCchhHHHHHH
Confidence 3445666777899999999999999866655 5577778888999999999999999999 565666777765
No 162
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=82.43 E-value=22 Score=36.14 Aligned_cols=94 Identities=17% Similarity=0.147 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC-----CCCchHHHHHHHHHHHHHcCChHHHHHHHH--------HH
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR-----PTFFGGEIQIWLAMAYEANNRHADCIALYK--------QL 232 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~-----nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ--------~L 232 (276)
-.+...+-.+..++-+|+|..|...++.+...... ....+..+.+..++-|++.|+.+.|...|+ ..
T Consensus 359 l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~ 438 (608)
T PF10345_consen 359 LQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAA 438 (608)
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhh
Confidence 34667788899999999999999999988876543 245677899999999999999999999998 55
Q ss_pred HHhCCCHHHHHHHH-HHHHhhcCCCCCC
Q 023865 233 ESNHPSKNIRRQAA-DLRYILQAPKLKI 259 (276)
Q Consensus 233 ~~~HPd~qVRqQAK-qLLyILEAPkLkr 259 (276)
..+.+..++.--|. .+.-|+..|.=+.
T Consensus 439 ~~~~~~~El~ila~LNl~~I~~~~~~~~ 466 (608)
T PF10345_consen 439 NRKSKFRELYILAALNLAIILQYESSRD 466 (608)
T ss_pred ccCCcchHHHHHHHHHHHHHhHhhcccc
Confidence 45677777777766 3555666555433
No 163
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=82.27 E-value=7.4 Score=40.56 Aligned_cols=65 Identities=15% Similarity=0.148 Sum_probs=50.2
Q ss_pred hcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 023865 180 GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL 248 (276)
Q Consensus 180 erGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqL 248 (276)
++.-..+++.+.|-.+. .+.......+.-|.-|.-.|++++|-++|+.|+.+||+.---.||++|
T Consensus 20 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (578)
T PRK15490 20 QEKKLAQAVALIDSELP----TEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNNDEARYEYARRL 84 (578)
T ss_pred HHhhHHHHHHHHHHhCC----ccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcchHHHHHHHH
Confidence 34445556666665443 333344577888899999999999999999999999998888999987
No 164
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=82.07 E-value=2.4 Score=39.89 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=41.7
Q ss_pred cCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 181 KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 181 rGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
....-+||-+||.++...|.|. ++++||+..|.-.|-...|..+|..|-
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~----~~~LlLvrlY~~LG~~~~A~~~~~~L~ 244 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNY----QLKLLLVRLYSLLGAGSLALEHYESLD 244 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHhcC
Confidence 4556689999999999554444 599999999999999999999999886
No 165
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.73 E-value=2.8 Score=43.73 Aligned_cols=56 Identities=21% Similarity=0.389 Sum_probs=46.1
Q ss_pred HhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 179 YGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 179 LerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
++-.=...||.+||++.-+.|..+. -||..|.++...|..++|..+|+.+-.++|.
T Consensus 637 idtqf~ekai~y~ekaaliqp~~~k----wqlmiasc~rrsgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 637 IDTQFSEKAINYFEKAALIQPNQSK----WQLMIASCFRRSGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred HhhHHHHHHHHHHHHHHhcCccHHH----HHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence 4445567899999997765555454 8999999999999999999999999878875
No 166
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=81.19 E-value=2.7 Score=44.27 Aligned_cols=60 Identities=17% Similarity=0.177 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
..|=.|...+++++|..|.=+|.+|+.+-|.++- +.-.+-+.|...|+.++|+.+|.+-.
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsv----i~~~~g~~~~~~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSV----ILCHIGRIQHQLKRKDKALQLYEKAI 550 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcCCccchh----HHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence 4455588899999999999999999997777776 78888899999999999999998866
No 167
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=81.12 E-value=2.2 Score=29.46 Aligned_cols=34 Identities=29% Similarity=0.299 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP 201 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~n 201 (276)
....+..|...+..|+|.+|.+.|+.++...|.+
T Consensus 25 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 25 PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 4567889999999999999999999999866664
No 168
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.74 E-value=5.6 Score=42.85 Aligned_cols=66 Identities=26% Similarity=0.288 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (276)
+..+++.|-.-.++|....|+.+++++++..|.- ..+---|+..|+.+|..++||..|+.-+.--|
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~----aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P 419 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF----AAAHNNLASIYKQQGNLDDAIMCYKEALRIKP 419 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh----hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc
Confidence 7778888999999999999999999999855443 44788899999999999999999998873333
No 169
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=80.55 E-value=5 Score=40.97 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=51.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhC----CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 173 ELGQKAYGKGMYGRAIEFLEGALTII----PRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 173 eaG~aALerGdY~qAIelLE~Al~~~----~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
..|..-..+|+|..|+++++.|+... ....+.-....++++.+|...|+..+|+-+|+.-.
T Consensus 204 ~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL 268 (508)
T KOG1840|consen 204 NLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEAL 268 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 38899999999999999999999762 23455556678899999999999999999998754
No 170
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=79.89 E-value=20 Score=36.60 Aligned_cols=60 Identities=17% Similarity=0.144 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
..|-.++---..|+|..|+++++.|+. .||.-.+..|+.|..|-..|+.++|......-.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~----htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar 255 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIE----HTPTLVELYMTKARILKHAGDLKEAAEAMDEAR 255 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 446667777789999999999999999 455567899999999999999999998776554
No 171
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=79.51 E-value=11 Score=34.02 Aligned_cols=73 Identities=12% Similarity=0.115 Sum_probs=53.1
Q ss_pred HHHhcCCHHHHHHHHHHHhhhCCCCC--CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH----HHHHHHHHHHH
Q 023865 177 KAYGKGMYGRAIEFLEGALTIIPRPT--FFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK----NIRRQAADLRY 250 (276)
Q Consensus 177 aALerGdY~qAIelLE~Al~~~~~nS--~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~----qVRqQAKqLLy 250 (276)
...++.=+..|+++|+.+........ --...+.+.++--+...|+.++|+.++..++ .||+. .+.+.|+.+-.
T Consensus 134 ~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi-~~~~~s~~~~l~~~AR~~w~ 212 (214)
T PF09986_consen 134 EENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVI-GSKKASKEPKLKDMARDQWQ 212 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHH
Confidence 34444457888899998886554322 1224677888999999999999999999999 77753 55677776543
No 172
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=78.58 E-value=5.8 Score=43.31 Aligned_cols=67 Identities=10% Similarity=0.083 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCc---------------hHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF---------------GGEIQIWLAMAYEANNRHADCIALYKQL 232 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~l---------------GGEAQmwLAtAYqa~Gq~EkAIALCQ~L 232 (276)
..-.|-.|.-.+++++|.++.-. .++...+.+++. .-.|.+.||.||+..|+.++|+++|+.+
T Consensus 65 i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~ 142 (906)
T PRK14720 65 ISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERL 142 (906)
T ss_pred eehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 45677888899999999999877 777777766611 1148999999999999999999999999
Q ss_pred HHhC
Q 023865 233 ESNH 236 (276)
Q Consensus 233 ~~~H 236 (276)
..-.
T Consensus 143 L~~D 146 (906)
T PRK14720 143 VKAD 146 (906)
T ss_pred HhcC
Confidence 8433
No 173
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=78.28 E-value=26 Score=28.31 Aligned_cols=79 Identities=14% Similarity=0.097 Sum_probs=52.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhh-CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 023865 173 ELGQKAYGKGMYGRAIEFLEGALTI-IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYI 251 (276)
Q Consensus 173 eaG~aALerGdY~qAIelLE~Al~~-~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyI 251 (276)
..-..++.+|+.+.|++++..--.. ...++.+--..+..-..=.-..|+..+||.++|+-. .+.+....+.-++++..
T Consensus 6 ~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l-~~~~~~~~~~l~~~~~l 84 (145)
T PF10607_consen 6 KKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHL-SPFNDEFLEELKKLMSL 84 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHh-hhhHHHHHHHHHHHHHH
Confidence 3456788999999999999986532 334455544444444444445799999999999855 33333466666666555
Q ss_pred h
Q 023865 252 L 252 (276)
Q Consensus 252 L 252 (276)
|
T Consensus 85 L 85 (145)
T PF10607_consen 85 L 85 (145)
T ss_pred H
Confidence 5
No 174
>PLN02789 farnesyltranstransferase
Probab=78.08 E-value=11 Score=35.73 Aligned_cols=55 Identities=11% Similarity=0.217 Sum_probs=32.9
Q ss_pred cCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCH
Q 023865 181 KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN-RHADCIALYKQLESNHPSK 239 (276)
Q Consensus 181 rGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~G-q~EkAIALCQ~L~~~HPd~ 239 (276)
.+.|.+|+.++.+++...|.+.. +......++...| +.++|+.+|.+++..+|..
T Consensus 50 ~e~serAL~lt~~aI~lnP~~yt----aW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn 105 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYT----VWHFRRLCLEALDADLEEELDFAEDVAEDNPKN 105 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHH----HHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc
Confidence 34666666666666665555544 5555555666666 3466666666666555543
No 175
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=77.67 E-value=4.6 Score=42.19 Aligned_cols=90 Identities=20% Similarity=0.264 Sum_probs=67.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH-hCCCHHHHHHHHHHH
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES-NHPSKNIRRQAADLR 249 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~-~HPd~qVRqQAKqLL 249 (276)
..+.|-.||..|+|..|.+++..++. +..-..++.+-.-.-|.+.|+.++|+.++-+|-. --.+.+|--|-..+-
T Consensus 493 ~~nkgn~~f~ngd~dka~~~ykeal~----ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiy 568 (840)
T KOG2003|consen 493 LTNKGNIAFANGDLDKAAEFYKEALN----NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIY 568 (840)
T ss_pred hhcCCceeeecCcHHHHHHHHHHHHc----CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34457789999999999999999987 5555678999999999999999999999887631 123556666666666
Q ss_pred HhhcCCCCCCCcccccc
Q 023865 250 YILQAPKLKISQEEMVT 266 (276)
Q Consensus 250 yILEAPkLkrp~eW~v~ 266 (276)
..||.|.-.+ +|.++
T Consensus 569 e~led~aqai--e~~~q 583 (840)
T KOG2003|consen 569 ELLEDPAQAI--ELLMQ 583 (840)
T ss_pred HHhhCHHHHH--HHHHH
Confidence 6677765332 55554
No 176
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=77.52 E-value=4.9 Score=28.63 Aligned_cols=33 Identities=36% Similarity=0.541 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTII 198 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~ 198 (276)
..+...+..|..-..+|+|.+|++++++++++.
T Consensus 44 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 44 DTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 457889999999999999999999999998753
No 177
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.94 E-value=7.7 Score=35.90 Aligned_cols=64 Identities=13% Similarity=0.104 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
-..++.+.+.++.|+|+.|+..|..++. .+..+.+..=+.+-||...-..|+.++|+++..+..
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~-~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~ 153 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALA-QTKDENLKALAALRLARVQLQQKKADAALKTLDTIK 153 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHc-cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc
Confidence 3567788888888888888888888775 444555555566666666666666666666655554
No 178
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=76.87 E-value=68 Score=32.61 Aligned_cols=86 Identities=23% Similarity=0.307 Sum_probs=55.1
Q ss_pred HHHHHHHHHHH-HHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 023865 112 IEEMRELEKKA-EELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKE--QAERRATAQLMFELGQKAYGKGMYGRAI 188 (276)
Q Consensus 112 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~~a~~--~a~~~e~ae~~yeaG~aALerGdY~qAI 188 (276)
+.+.+.|.+.. +-+++.++.+. ...-..-..+-..++++|+.+..- .-+.+..+...+.....|+..|+|-.|+
T Consensus 52 ~~~~~~l~~eI~d~l~~~~~~~i---~~~l~~a~~e~~~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa 128 (593)
T PF06248_consen 52 IERSKSLAREINDLLQSEIENEI---QPQLRDAAEELQELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAA 128 (593)
T ss_pred HHHHHHHHHHHHHHHHhhccchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 34444555555 22344333222 222233345556777788766542 2356677889999999999999999999
Q ss_pred HHHHHHhhhCCC
Q 023865 189 EFLEGALTIIPR 200 (276)
Q Consensus 189 elLE~Al~~~~~ 200 (276)
..|+.+-.....
T Consensus 129 ~~L~~~~~~L~~ 140 (593)
T PF06248_consen 129 DLLEELKSLLDD 140 (593)
T ss_pred HHHHHHHHHHHh
Confidence 999998765553
No 179
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=76.77 E-value=12 Score=27.91 Aligned_cols=59 Identities=24% Similarity=0.142 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHH--HHcCChHHHHHHH
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAY--EANNRHADCIALY 229 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAY--qa~Gq~EkAIALC 229 (276)
.|..|...|..|+|=.|=+.||.+....+.+.+..-+..|.+|.|+ ...|+..-|..+|
T Consensus 2 ~~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 2 ALEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 5788999999999999999999999766655555556666666554 5678888777665
No 180
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.05 E-value=11 Score=34.63 Aligned_cols=55 Identities=22% Similarity=0.190 Sum_probs=45.8
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHH
Q 023865 172 FELGQKAYG-KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCI 226 (276)
Q Consensus 172 yeaG~aALe-rGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAI 226 (276)
++.+++.|- +-|=..++++|-.+++..+....+-.++.+.||+.|+..|+.+.|-
T Consensus 143 lq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 143 LQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 344444443 8888999999999999998888888999999999999999999885
No 181
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=75.53 E-value=50 Score=34.14 Aligned_cols=114 Identities=18% Similarity=0.263 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHH----HHHHHHHHH---HHHHHHHHHHHHHHhcCCHHHH
Q 023865 115 MRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEK----VAKEQAERR---ATAQLMFELGQKAYGKGMYGRA 187 (276)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~----~a~~~a~~~---e~ae~~yeaG~aALerGdY~qA 187 (276)
+.+++..|+.++.--..+.++ ---+++|++.+.+- .+.....+. ......|-.++..|.-|+|+.|
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~-------~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A 325 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPD-------FQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEA 325 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCcc-------HHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchH
Confidence 455666677776655555542 13455566644432 111111111 3356789999999999999999
Q ss_pred HHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 188 IEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 188 IelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
...|.+.+...|.|-- .+-..+.-|...|+..+|++.+++.....|+.
T Consensus 326 ~~~l~~L~~~~P~N~~----~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~ 373 (484)
T COG4783 326 LKLLQPLIAAQPDNPY----YLELAGDILLEANKAKEAIERLKKALALDPNS 373 (484)
T ss_pred HHHHHHHHHhCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Confidence 9999999987774433 55566778999999999999999999899993
No 182
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=75.31 E-value=21 Score=31.76 Aligned_cols=71 Identities=14% Similarity=0.142 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023865 164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES 234 (276)
Q Consensus 164 ~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~ 234 (276)
..+.+...+.-+..|...|.|..|...|..+....+..+.....+.+.-|.-.-..|+..+||..-+.+++
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556788999999999999999999999988766555554567999999999999999999999999984
No 183
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.10 E-value=6.3 Score=40.14 Aligned_cols=54 Identities=22% Similarity=0.310 Sum_probs=43.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 177 KAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 177 aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
.-+-+.||.-||.+||-....... .-.++++|++-+|-..|+.++|...|.-|.
T Consensus 31 dfls~rDytGAislLefk~~~~~E---EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~ 84 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDRE---EEDSLQLWIAHCYFHLGDYEEALNVYTFLM 84 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchh---hhHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 457788999999999987743322 224689999999999999999999999887
No 184
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=74.79 E-value=5.4 Score=37.18 Aligned_cols=69 Identities=14% Similarity=0.052 Sum_probs=44.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHH
Q 023865 173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAA 246 (276)
Q Consensus 173 eaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAK 246 (276)
-.-+.+|-.|+|.+||.-.+ +. +.+...-.+..+++++||.+.|+.+..|.-.+.=. .-+...|+-+|.
T Consensus 6 f~vrn~fy~G~Y~~~i~e~~--~~--~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~-~~~l~av~~la~ 74 (290)
T PF04733_consen 6 FTVRNQFYLGNYQQCINEAS--LK--SFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS-SPELQAVRLLAE 74 (290)
T ss_dssp HHHHHHHCTT-HHHHCHHHH--CH--TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS-SCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhh--cc--CCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC-ChhHHHHHHHHH
Confidence 34578899999999997655 22 33444556899999999999999988776554432 223334444443
No 185
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.95 E-value=8.7 Score=41.47 Aligned_cols=61 Identities=16% Similarity=0.159 Sum_probs=52.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 174 aG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
-|-.-=++|+.+.|+.+++.++...|..-. +.+.|+.||+..|+.+.|..+|.+-..-+|+
T Consensus 122 ~aN~~kerg~~~~al~~y~~aiel~p~fid----a~inla~al~~~~~~~~a~~~~~~alqlnP~ 182 (966)
T KOG4626|consen 122 LANILKERGQLQDALALYRAAIELKPKFID----AYINLAAALVTQGDLELAVQCFFEALQLNPD 182 (966)
T ss_pred HHHHHHHhchHHHHHHHHHHHHhcCchhhH----HHhhHHHHHHhcCCCcccHHHHHHHHhcCcc
Confidence 666677899999999999999997666554 9999999999999999999999987756664
No 186
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=73.52 E-value=16 Score=31.17 Aligned_cols=67 Identities=16% Similarity=0.118 Sum_probs=52.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 023865 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYI 251 (276)
Q Consensus 175 G~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyI 251 (276)
....+.||+|.+| ++++.+. .++ -+.=|+|.|--..|-..++-.....|. ...+|+.+..|..+..-
T Consensus 47 ~~sLmNrG~Yq~A--Ll~~~~~----~~p---dL~p~~AL~a~klGL~~~~e~~l~rla-~~g~~~~q~Fa~~~~~~ 113 (116)
T PF09477_consen 47 LSSLMNRGDYQEA--LLLPQCH----CYP---DLEPWAALCAWKLGLASALESRLTRLA-SSGSPELQAFAAGFREQ 113 (116)
T ss_dssp HHHHHHTT-HHHH--HHHHTTS------G---GGHHHHHHHHHHCT-HHHHHHHHHHHC-T-SSHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHH--HHhcccC----CCc---cHHHHHHHHHHhhccHHHHHHHHHHHH-hCCCHHHHHHHHHHHHH
Confidence 4567899999999 7777665 333 267799999999999999999999999 89999999999877543
No 187
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.50 E-value=57 Score=28.97 Aligned_cols=67 Identities=18% Similarity=0.203 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (276)
..-.+++..-.|+..++-..+-.+|.. +....++.+ ++.+.-++-|...|+..+|+.+.+.+....|
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~A-LrvLRP~~~---e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~ 75 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDA-LRVLRPEFP---ELDLFDGWLHIVRGDWDDALRLLRELEERAP 75 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHH-HHHhCCCch---HHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 445677888899999999998888887 554555555 5999999999999999999999999997776
No 188
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=72.84 E-value=6.4 Score=23.22 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=22.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH
Q 023865 210 IWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 210 mwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
-.|+.+|...|+.++|+.+++.+.
T Consensus 4 n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 4 NTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 468899999999999999999997
No 189
>PLN02789 farnesyltranstransferase
Probab=72.68 E-value=28 Score=33.05 Aligned_cols=62 Identities=13% Similarity=0.028 Sum_probs=49.1
Q ss_pred HHHHHHhcCC--HHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 174 LGQKAYGKGM--YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 174 aG~aALerGd--Y~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
.|.....-|. |..+++++++++...+.+.. |......++...|+.++|+..|.++++..|..
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~----AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N 175 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLDAKNYH----AWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN 175 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhCcccHH----HHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc
Confidence 3434444454 57899999999998887776 88889999999999999999999999655543
No 190
>PF05168 HEPN: HEPN domain; InterPro: IPR007842 The HEPN (higher eukaryotes and prokaryotes nucleotide-binding) domain is a region of 110 residues found in the C terminus of sacsin, a chaperonin implicated in an early-onset neurodegenerative disease in human, and in many bacterial and archeabacterial proteins. There are three classes of proteins with HEPN domain: Single-domain HEPN proteins found in many bacteria. Two-domain proteins with N-terminal nucleotidyltransferase (NT) and C- terminal HEPN domains. This N-terminal NT domain belongs to a large family of NTs, which includes several classes of enzymes that are responsible for some types of bacterial resistance to aminoglycosides. These enzymes deactivate various antibiotics by transferring a nucleotidyl group to the drug. A multidomain sacsin protein in genomes of fish and mammals. The HEPN domain is located at the C terminus of the protein, directly after the DnaJ domain (see PDOC00553 from PROSITEDOC). The crystal structure of the HEPN domain from the TM0613 protein of Thermotoga maritima indicates that it is structurally similar to the C-terminal all- alpha-helical domain of kanamycin nucleotidyltransferases (KNTases). It is composed of five alpha helices, three of which form an up- and-down helical bundle, with a pair of short helices on the side. The distant structural similarity suggests that the HEPN domain might be involved in nucleotide binding [].; PDB: 1O3U_A 1WOL_A 3O10_D 2HSB_A 1UFB_A.
Probab=71.97 E-value=40 Score=25.34 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 023865 164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (276)
Q Consensus 164 ~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~ 196 (276)
-+..|+..++.+...++.|+|..|+-++..++.
T Consensus 4 ~~~~A~~~l~~A~~~~~~~~~~~a~~~a~~a~e 36 (118)
T PF05168_consen 4 WLEKAEEDLKAAEILLEEGDYNWAVFHAYQAVE 36 (118)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456788899999999999999999988777665
No 191
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=71.94 E-value=6.6 Score=23.08 Aligned_cols=25 Identities=8% Similarity=0.226 Sum_probs=22.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 209 QIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 209 QmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
...|..+|...|+.++|..+++.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3468899999999999999999987
No 192
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=71.59 E-value=9 Score=40.27 Aligned_cols=64 Identities=17% Similarity=0.270 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 172 yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
.+.|-.+-..+.|..||..+.+++...|.+.. +.-.++..|.-.|..++||..|.+-.--.|+-
T Consensus 459 ~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~----~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 459 NNLGHAYRKLNKYEEAIDYYQKALLLSPKDAS----THASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHcCCCchh----HHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 34455555566666666666666655554444 44445555555666666666554322244444
No 193
>PF12854 PPR_1: PPR repeat
Probab=71.01 E-value=5.7 Score=25.68 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHH
Q 023865 208 IQIWLAMAYEANNRHADCIALYKQL 232 (276)
Q Consensus 208 AQmwLAtAYqa~Gq~EkAIALCQ~L 232 (276)
..-.|+.+|...|+.++|+.+....
T Consensus 9 ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 9 TYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 5567999999999999999998753
No 194
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=70.74 E-value=76 Score=31.55 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=44.3
Q ss_pred HHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHH---cCChHHHHHHHHH-HH
Q 023865 177 KAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA---NNRHADCIALYKQ-LE 233 (276)
Q Consensus 177 aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa---~Gq~EkAIALCQ~-L~ 233 (276)
.--.-.+|+.=|++.|..-............++...|.|+-. .|+.++|+.++.. |.
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~ 210 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE 210 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh
Confidence 334567899999999986654323344455799999999999 9999999999998 44
No 195
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=70.09 E-value=17 Score=30.96 Aligned_cols=67 Identities=13% Similarity=0.164 Sum_probs=56.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 023865 176 QKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (276)
Q Consensus 176 ~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyIL 252 (276)
...+.||+|..|..++++.| ++ -+-=|+|.|--..|-..++-.-.-.|. ...+|+.++.|..+...+
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~------~p---dlepw~ALce~rlGl~s~l~~rl~rla-~sg~p~lq~Faag~req~ 113 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLC------YP---DLEPWLALCEWRLGLGSALESRLNRLA-ASGDPRLQTFVAGMREQI 113 (115)
T ss_pred HHHHccchHHHHHHhcCCCC------Cc---hHHHHHHHHHHhhccHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHh
Confidence 45678999999999999864 33 377899999999999999988888888 899999999998876543
No 196
>PLN03218 maturation of RBCL 1; Provisional
Probab=70.02 E-value=16 Score=40.29 Aligned_cols=53 Identities=21% Similarity=0.169 Sum_probs=34.9
Q ss_pred HhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023865 179 YGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES 234 (276)
Q Consensus 179 LerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~ 234 (276)
...|++..|+++|+.....- -.....+...|+.+|...|+.++|+.+|+.+.+
T Consensus 660 ~k~G~~eeA~~l~~eM~k~G---~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~ 712 (1060)
T PLN03218 660 GHAGDLDKAFEILQDARKQG---IKLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712 (1060)
T ss_pred HhCCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34577777777777765422 122234777777888888888888888887763
No 197
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=69.89 E-value=17 Score=38.12 Aligned_cols=79 Identities=16% Similarity=0.153 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH--------------HHh
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQL--------------ESN 235 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L--------------~~~ 235 (276)
..|+.|...|+.|+...|+=.||.++...|.+ .+|+.||-+..--+++...||+..+.- .=.
T Consensus 287 dPf~eG~~lm~nG~L~~A~LafEAAVkqdP~h----aeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVS 362 (579)
T KOG1125|consen 287 DPFKEGCNLMKNGDLSEAALAFEAAVKQDPQH----AEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVS 362 (579)
T ss_pred ChHHHHHHHHhcCCchHHHHHHHHHHhhChHH----HHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 46888999999999999999999888854443 457777777777777777666654432 123
Q ss_pred CCCHHHHHHHHHHHHhh
Q 023865 236 HPSKNIRRQAADLRYIL 252 (276)
Q Consensus 236 HPd~qVRqQAKqLLyIL 252 (276)
|-|.....+|-.+|.-+
T Consensus 363 ytNeg~q~~Al~~L~~W 379 (579)
T KOG1125|consen 363 YTNEGLQNQALKMLDKW 379 (579)
T ss_pred HhhhhhHHHHHHHHHHH
Confidence 44555566666665544
No 198
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=69.18 E-value=11 Score=27.46 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCC
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF 203 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~ 203 (276)
.|-.+..-+.-|+|..|..+++.++...|.|..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 678889999999999999999999997776654
No 199
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=68.47 E-value=15 Score=38.92 Aligned_cols=63 Identities=14% Similarity=0.204 Sum_probs=54.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (276)
Q Consensus 174 aG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (276)
.|..-.+.|++++|++++++||.+.+.+.- .++-.+..+-..|+.++|.....+|..--|+..
T Consensus 529 ~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l----~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es 591 (638)
T KOG1126|consen 529 IGRIQHQLKRKDKALQLYEKAIHLDPKNPL----CKYHRASILFSLGRYVEALQELEELKELVPQES 591 (638)
T ss_pred hhHHHHHhhhhhHHHHHHHHHHhcCCCCch----hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchH
Confidence 477788999999999999999997776665 889999999999999999999999986666543
No 200
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=68.33 E-value=12 Score=29.29 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 023865 163 ERRATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (276)
Q Consensus 163 ~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~ 196 (276)
..+..|+..|..+..+|..|+|..|..+++.+..
T Consensus 40 ~el~~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~ 73 (103)
T PF14346_consen 40 VELKEAREKLQRAKAALDDGDYERARRLAEQAQA 73 (103)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3677899999999999999999999999998765
No 201
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=68.01 E-value=80 Score=30.91 Aligned_cols=73 Identities=18% Similarity=0.069 Sum_probs=49.0
Q ss_pred HhcCCHHH---HHHHHHHHhhhCCC--------CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCHHHHHH
Q 023865 179 YGKGMYGR---AIEFLEGALTIIPR--------PTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH---PSKNIRRQ 244 (276)
Q Consensus 179 LerGdY~q---AIelLE~Al~~~~~--------nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H---Pd~qVRqQ 244 (276)
.....|.. .|++|+.+....++ ..+--.++.+-||..|-..||.+.|....=.|..+. -|..+|+
T Consensus 198 ~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk- 276 (304)
T COG3118 198 AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARK- 276 (304)
T ss_pred chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHH-
Confidence 34455555 47777776654421 123345899999999999999999999887777553 4455555
Q ss_pred HHHHHHhhcC
Q 023865 245 AADLRYILQA 254 (276)
Q Consensus 245 AKqLLyILEA 254 (276)
+|+.+|++
T Consensus 277 --~lle~f~~ 284 (304)
T COG3118 277 --TLLELFEA 284 (304)
T ss_pred --HHHHHHHh
Confidence 45666554
No 202
>PLN03218 maturation of RBCL 1; Provisional
Probab=67.88 E-value=22 Score=39.34 Aligned_cols=53 Identities=13% Similarity=0.029 Sum_probs=26.1
Q ss_pred hcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 180 GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 180 erGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
+.|++..|.++|+........-.+ ..-+...|+.+|...|+.++|+.+|+.+.
T Consensus 554 k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 554 QSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456666666666665432110000 01244455555555555555555555555
No 203
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=67.64 E-value=16 Score=38.44 Aligned_cols=62 Identities=19% Similarity=0.256 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (276)
Q Consensus 172 yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (276)
|.-|.--|--|.|+.|-.+|-++..+.+...+ +++..+.+|.+.|.+++||+.|-+-.+-.|
T Consensus 316 ~aVg~YYl~i~k~seARry~SKat~lD~~fgp----aWl~fghsfa~e~EhdQAmaaY~tAarl~~ 377 (611)
T KOG1173|consen 316 FAVGCYYLMIGKYSEARRYFSKATTLDPTFGP----AWLAFGHSFAGEGEHDQAMAAYFTAARLMP 377 (611)
T ss_pred hhHHHHHHHhcCcHHHHHHHHHHhhcCccccH----HHHHHhHHhhhcchHHHHHHHHHHHHHhcc
Confidence 44566677779999999999998886665555 999999999999999999999987664444
No 204
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.22 E-value=34 Score=33.19 Aligned_cols=71 Identities=17% Similarity=0.135 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIR 242 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVR 242 (276)
....=+-..+|+..|+-+-|-.-....-... ++|. ++...-||-++++|..++||.+|..|....|.-.+-
T Consensus 52 w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~---RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~ 122 (289)
T KOG3060|consen 52 WTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSK---RVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVI 122 (289)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCCh---hHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHH
Confidence 3334445678888888888877777766666 4444 377888999999999999999999998666655543
No 205
>PLN03077 Protein ECB2; Provisional
Probab=67.12 E-value=50 Score=34.40 Aligned_cols=25 Identities=0% Similarity=0.012 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHH
Q 023865 208 IQIWLAMAYEANNRHADCIALYKQL 232 (276)
Q Consensus 208 AQmwLAtAYqa~Gq~EkAIALCQ~L 232 (276)
..-.|+.+|...|+.++|..+.+.+
T Consensus 627 ~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 627 HYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 4444555555555555555555443
No 206
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=65.83 E-value=59 Score=29.34 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=24.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHH
Q 023865 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIA 227 (276)
Q Consensus 175 G~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIA 227 (276)
|.++-+-|+.+.||+.|-+++...|.+-. +..-=|+||.-+|+.++|+.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raS----ayNNRAQa~RLq~~~e~ALd 98 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERAS----AYNNRAQALRLQGDDEEALD 98 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchH----hhccHHHHHHHcCChHHHHH
Confidence 44444555555555555555555543332 33334455555555555543
No 207
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=65.77 E-value=15 Score=33.10 Aligned_cols=51 Identities=18% Similarity=0.143 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhhCC--CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023865 185 GRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (276)
Q Consensus 185 ~qAIelLE~Al~~~~--~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~ 235 (276)
...|++|++|..... ...+....+...||.-|...|+.++|+++++.+...
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~ 207 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASS 207 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 356889999987666 346777788899999999999999999999999743
No 208
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=65.17 E-value=12 Score=35.56 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh-hCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALT-IIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL 248 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~-~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqL 248 (276)
.....+...+.+|....|+.+|+..+. ...+..++ ..++.||..++..|..+-|..+|+.|...-....+..|==.|
T Consensus 215 ~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf--~~rL~~A~l~~~~g~~~lA~~ll~~L~~~~~~~~L~~WEP~L 292 (301)
T TIGR03362 215 ELREEARALAAEGGLEAALQRLQQRLAQAREPRERF--HWRLLLARLLEQAGKAELAQQLYAALDQQIQQLGLAEWEPAL 292 (301)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCccccChHH
Confidence 345667888899999999999998554 23333443 578889999999999999999999998655555555554444
Q ss_pred HHhh
Q 023865 249 RYIL 252 (276)
Q Consensus 249 LyIL 252 (276)
+.-+
T Consensus 293 ~~~l 296 (301)
T TIGR03362 293 ALRV 296 (301)
T ss_pred HHHH
Confidence 4433
No 209
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=64.20 E-value=20 Score=35.66 Aligned_cols=65 Identities=18% Similarity=0.082 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
==.+..|.-..-+|+-..||+.|+.++.....-..+..=...-++.+|.-+++.++|...+..|.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 34678899999999999999999988842222223333456678999999999999999999999
No 210
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=64.20 E-value=21 Score=34.38 Aligned_cols=50 Identities=20% Similarity=0.173 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYE 217 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYq 217 (276)
....+=.|..+|++|+|.+|+..+++.+...|.+.+--.-++--++.+-.
T Consensus 227 iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~~~~ 276 (287)
T COG4235 227 IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIARALA 276 (287)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHh
Confidence 34467789999999999999999999999999998866655555554443
No 211
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.32 E-value=6.6 Score=39.12 Aligned_cols=78 Identities=17% Similarity=0.138 Sum_probs=56.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH----HHHHHHHH
Q 023865 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK----NIRRQAAD 247 (276)
Q Consensus 172 yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~----qVRqQAKq 247 (276)
=-.+..||..|..++||++|..++...++... +.-+-+.+|-..++-..||.=|-.-+.-+||. ..|..|.+
T Consensus 118 k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~----l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r 193 (377)
T KOG1308|consen 118 KVQASEALNDGEFDTAIELFTSAIELNPPLAI----LYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER 193 (377)
T ss_pred HHHHHHHhcCcchhhhhcccccccccCCchhh----hcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH
Confidence 34567899999999999999999986665544 44456677777788888888776655455554 35667777
Q ss_pred HHHhhc
Q 023865 248 LRYILQ 253 (276)
Q Consensus 248 LLyILE 253 (276)
+|.+++
T Consensus 194 llg~~e 199 (377)
T KOG1308|consen 194 LLGNWE 199 (377)
T ss_pred HhhchH
Confidence 776654
No 212
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=62.95 E-value=37 Score=37.49 Aligned_cols=62 Identities=16% Similarity=0.226 Sum_probs=50.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (276)
Q Consensus 175 G~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (276)
|..-+..|.|+.|...||+. ....+++. ...-.|..+|+-.|+.++|..+|+....++|+.+
T Consensus 50 aLsl~r~gk~~ea~~~Le~~-~~~~~~D~---~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~ee 111 (932)
T KOG2053|consen 50 ALSLFRLGKGDEALKLLEAL-YGLKGTDD---LTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEE 111 (932)
T ss_pred HHHHHHhcCchhHHHHHhhh-ccCCCCch---HHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHH
Confidence 56667899999999999984 43455544 3556789999999999999999999998999844
No 213
>PF07543 PGA2: Protein trafficking PGA2; InterPro: IPR011431 A Saccharomyces cerevisiae (Baker's yeast) member of this family (PGA2, P53903 from SWISSPROT) is a single pass membrane protein which has been implicated in protein trafficking [, ].
Probab=62.83 E-value=22 Score=30.74 Aligned_cols=29 Identities=31% Similarity=0.649 Sum_probs=24.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023865 98 EYDWEKEMRRRVKEIEEMRELEKKAEELQSK 128 (276)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (276)
+|+|=+.-|+|++. .++.|++.+++++..
T Consensus 97 ~~~WGkkaRrRqkk--~~k~l~~~~e~~~~~ 125 (140)
T PF07543_consen 97 VFGWGKKARRRQKK--QQKKLEEAEEQRREE 125 (140)
T ss_pred CccccHHHHHHHHH--HHHHHHHHHHHHHhc
Confidence 58999999999997 477888888888777
No 214
>PF13041 PPR_2: PPR repeat family
Probab=62.78 E-value=17 Score=24.40 Aligned_cols=34 Identities=12% Similarity=0.205 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023865 208 IQIWLAMAYEANNRHADCIALYKQLESNHPSKNI 241 (276)
Q Consensus 208 AQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV 241 (276)
..--|+.+|...|+.++|..+++++.++.-.|.+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~ 38 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDS 38 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH
Confidence 4556889999999999999999999955444433
No 215
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.32 E-value=1.2e+02 Score=28.25 Aligned_cols=82 Identities=20% Similarity=0.106 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023865 162 AERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI 241 (276)
Q Consensus 162 a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV 241 (276)
......+...|+....++..+.- .++..+|+.+. .++.|..|.-+-|-||.++--.|+.++|++-.++-...-.|..+
T Consensus 47 ~~q~~~AS~~Y~~~i~~~~ak~~-~~~~~~ekf~~-~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~l 124 (207)
T COG2976 47 VEQAQEASAQYQNAIKAVQAKKP-KSIAAAEKFVQ-ANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENL 124 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHh-hccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHH
Confidence 44445677899999999987777 88888888666 55577788899999999999999999999998877734445554
Q ss_pred HHHH
Q 023865 242 RRQA 245 (276)
Q Consensus 242 RqQA 245 (276)
+.-+
T Consensus 125 k~l~ 128 (207)
T COG2976 125 KALA 128 (207)
T ss_pred HHHH
Confidence 4433
No 216
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=61.50 E-value=35 Score=34.68 Aligned_cols=51 Identities=14% Similarity=0.045 Sum_probs=34.5
Q ss_pred hcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023865 180 GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES 234 (276)
Q Consensus 180 erGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~ 234 (276)
..|++..|...++.++...|.+.. ....|+.+|...|+.++|..+++.+.+
T Consensus 506 ~~g~~~~a~~~~~~l~~~~p~~~~----~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 506 IHKNLELGRLAAEKLYGMGPEKLN----NYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HcCCcHHHHHHHHHHhCCCCCCCc----chHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 567777777777776665544333 456777777777777777777777763
No 217
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=61.27 E-value=14 Score=22.43 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLE 192 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE 192 (276)
..+..|...+.+|++.+|..+|+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 35778999999999999999986
No 218
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=60.76 E-value=15 Score=38.62 Aligned_cols=57 Identities=28% Similarity=0.302 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIAL 228 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIAL 228 (276)
+...++.+..||.+|+|+=|.++|.+++-..|.+. +++-+.|-+|+..|=..++-.+
T Consensus 452 adrVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~----~Ar~L~Ad~lEQLgYqaE~A~w 508 (655)
T COG2015 452 ADRVLELAREAFDKGDYRWAAELLNQAVFADPGNK----AARELQADALEQLGYQAESATW 508 (655)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHhhHHhcCCccH----HHHHHHHhHHHHhhhhhccchh
Confidence 66789999999999999999999999998555554 4999999999999977766443
No 219
>PF13628 DUF4142: Domain of unknown function (DUF4142)
Probab=60.42 E-value=13 Score=30.44 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=30.9
Q ss_pred cCChHHHHHHHHH-HHHhCCCHHHHHHHHHHHHhhc
Q 023865 219 NNRHADCIALYKQ-LESNHPSKNIRRQAADLRYILQ 253 (276)
Q Consensus 219 ~Gq~EkAIALCQ~-L~~~HPd~qVRqQAKqLLyILE 253 (276)
...++++|++|+. +..+-.|+.|+.+|...|..|+
T Consensus 95 i~~h~~~l~~~~~~~~~~~~~~~lk~~a~~~lp~l~ 130 (139)
T PF13628_consen 95 IKAHEKALALFEKQLAASGKDPELKAFAQETLPVLE 130 (139)
T ss_pred HHHHHHHHHHHHHHhhccCCCHHHHHHHHHHhHHHH
Confidence 4568899999999 7768899999999999998876
No 220
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=60.33 E-value=44 Score=33.22 Aligned_cols=62 Identities=18% Similarity=0.171 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
.+.....+..+++.|.|.+||++...+++..|.+.. ....|...|+..|+.=.||.-|..+.
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~----~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQ----DNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhH----HHHHHHHHHHHhccchhhhhHHHHHH
Confidence 455667788999999999999999999998777665 77888899999999988888887765
No 221
>PF12487 DUF3703: Protein of unknown function (DUF3703) ; InterPro: IPR022172 This family of proteins is found in bacteria. Proteins in this family are typically between 113 and 135 amino acids in length.
Probab=60.28 E-value=83 Score=26.57 Aligned_cols=62 Identities=13% Similarity=0.096 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHH
Q 023865 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCI 226 (276)
Q Consensus 165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAI 226 (276)
+..+...++.+..|+.+|+|.+|-.+||.|==..+...-.-..+-.+|=..=-.+++..+++
T Consensus 6 ~~~~~~el~~a~~a~~~~~~~~aw~hLErAHIlgQ~~~~~H~~~H~~ML~~a~r~rd~rEv~ 67 (112)
T PF12487_consen 6 RPAYDAELEAAREALAAGDLQQAWRHLERAHILGQPYPWLHTRVHWAMLRFALRQRDRREVL 67 (112)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHhhHHhcCCchhHHHHHHHHHHHHHHHccCHHHHH
Confidence 34577889999999999999999999999655555555555555555544444555555544
No 222
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=59.98 E-value=15 Score=25.24 Aligned_cols=28 Identities=32% Similarity=0.319 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhh
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTI 197 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~ 197 (276)
.....|.-.++.++|.+||+=|++++.+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3456789999999999999999998874
No 223
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.31 E-value=96 Score=33.87 Aligned_cols=67 Identities=19% Similarity=0.231 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC--CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~n--S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (276)
...+.+...|+-.+|-.|+++++.-+...+.. ++.-..+|=.|+-+|-+.-|.++|...|+.-. +|-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE-~~d 424 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAE-EVD 424 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-hhc
Confidence 45678889999999999999999988776633 55558999999999999999999999999998 774
No 224
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=59.14 E-value=33 Score=36.79 Aligned_cols=74 Identities=16% Similarity=0.143 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 162 AERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 162 a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
+...+..+..+-....-.+.|.+++|+++|...-...- .. --..--.+.-|+..|+.++|+.+|+.|+.++||.
T Consensus 179 ~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~--Dk--la~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn 252 (700)
T KOG1156|consen 179 KEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIV--DK--LAFEETKADLLMKLGQLEEAVKVYRRLLERNPDN 252 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHH--HH--HHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchh
Confidence 34445555566677778888999999999887443111 11 1234456777889999999999999999888874
No 225
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.85 E-value=46 Score=29.43 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP 201 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~n 201 (276)
.+.+..+.|+..+.+|+|..++.+|-.|+..++..
T Consensus 80 ~Fmqqv~lGE~L~~qg~~e~ga~h~~nAi~vcgqp 114 (143)
T KOG4056|consen 80 FFMQQVQLGEELLAQGNEEEGAEHLANAIVVCGQP 114 (143)
T ss_pred HHHHHHHhHHHHHHccCHHHHHHHHHHHHhhcCCH
Confidence 36678899999999999999999999999855544
No 226
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=58.69 E-value=91 Score=29.82 Aligned_cols=76 Identities=17% Similarity=0.038 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 023865 154 LEKVAKEQAERRAT--AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQ 231 (276)
Q Consensus 154 L~~~a~~~a~~~e~--ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~ 231 (276)
.+.++=-||.++.. ....=+.|.--+-+|++..|..+|.++....+.++. |.--||.+.-.+|+.+.|-.+-.+
T Consensus 152 ~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~----v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 152 EARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR----VRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH----HHHHHHHHHhhcCChHHHHhhccc
Confidence 33444444444433 334445678888899999999999998884444544 888999999999999999888766
Q ss_pred HH
Q 023865 232 LE 233 (276)
Q Consensus 232 L~ 233 (276)
..
T Consensus 228 e~ 229 (257)
T COG5010 228 EL 229 (257)
T ss_pred cc
Confidence 65
No 227
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=58.62 E-value=2.1e+02 Score=32.25 Aligned_cols=70 Identities=21% Similarity=0.246 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHhhhCCCCCCchHHHHHHH---------------------HHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023865 183 MYGRAIEFLEGALTIIPRPTFFGGEIQIWL---------------------AMAYEANNRHADCIALYKQLESNHPSKNI 241 (276)
Q Consensus 183 dY~qAIelLE~Al~~~~~nS~lGGEAQmwL---------------------AtAYqa~Gq~EkAIALCQ~L~~~HPd~qV 241 (276)
+|++||+.||+|-..+.......-.+.-|+ .++-.+..+.++|..|...+.-.-|-+..
T Consensus 415 QYQQAi~ALekAk~Lc~l~dLt~~~~e~~~~~f~A~~e~~Te~lL~Le~kms~s~AA~sQF~~AyqLV~~iaGE~~RS~A 494 (1480)
T COG3096 415 QYQQAIAALERAKELCHLPDLTADSAEEWLETFQAKEEEATEKLLSLEQKMSMAQAAHSQFEQAYQLVVAIAGELARSEA 494 (1480)
T ss_pred HHHHHHHHHHHHHHhcCccccchhhHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhCccchhhH
Confidence 699999999999988886654433444443 34556778889999888777767788888
Q ss_pred HHHHHHHHHhh
Q 023865 242 RRQAADLRYIL 252 (276)
Q Consensus 242 RqQAKqLLyIL 252 (276)
-++|+.+|--.
T Consensus 495 ~~~A~~llR~~ 505 (1480)
T COG3096 495 WDVARELLREG 505 (1480)
T ss_pred HHHHHHHHHhC
Confidence 88888887543
No 228
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=57.94 E-value=28 Score=35.30 Aligned_cols=48 Identities=10% Similarity=0.131 Sum_probs=32.7
Q ss_pred hcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023865 180 GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES 234 (276)
Q Consensus 180 erGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~ 234 (276)
+.|++..|.+.|+.... ++. -....|+.+|..+|+.++|+.+++.+..
T Consensus 372 k~G~~~~A~~vf~~m~~---~d~----~t~n~lI~~y~~~G~~~~A~~lf~~M~~ 419 (697)
T PLN03081 372 KWGRMEDARNVFDRMPR---KNL----ISWNALIAGYGNHGRGTKAVEMFERMIA 419 (697)
T ss_pred HCCCHHHHHHHHHhCCC---CCe----eeHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56777888777776432 222 2566777777777777777777777663
No 229
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=57.80 E-value=1.3e+02 Score=26.54 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhCCCCCCc
Q 023865 166 ATAQLMFELGQKAYGKG-MYGRAIEFLEGALTIIPRPTFF 204 (276)
Q Consensus 166 e~ae~~yeaG~aALerG-dY~qAIelLE~Al~~~~~nS~l 204 (276)
.-+-...+.|+..+.+| ++..|+.+|-.|+..++....+
T Consensus 88 ~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~L 127 (148)
T TIGR00985 88 AFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQL 127 (148)
T ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHH
Confidence 34778889999999999 9999999999999988876664
No 230
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=57.55 E-value=96 Score=31.79 Aligned_cols=90 Identities=20% Similarity=0.197 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHH--HHHHHHHh-hhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023865 158 AKEQAERRATAQLMFELGQKAYGKGMYGRA--IEFLEGAL-TIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES 234 (276)
Q Consensus 158 a~~~a~~~e~ae~~yeaG~aALerGdY~qA--IelLE~Al-~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~ 234 (276)
|.|.++-..+|+..|..+++|-+ +.|+++ +++.-+-- ......+..-.-+.--|||+-.+.|+..+|+..++.|.+
T Consensus 225 AEEEa~Ti~~AE~l~k~ALka~e-~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 225 AEEEATTIVDAERLFKQALKAGE-TIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHH-HHHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 45566666667777776666644 445433 22222211 122234443334455689999999999999999999998
Q ss_pred hCCCHHHHHHHHHH
Q 023865 235 NHPSKNIRRQAADL 248 (276)
Q Consensus 235 ~HPd~qVRqQAKqL 248 (276)
.+|-..+-.--..|
T Consensus 304 e~pl~t~lniheNL 317 (556)
T KOG3807|consen 304 EFPLLTMLNIHENL 317 (556)
T ss_pred hccHHHHHHHHHHH
Confidence 88866544433333
No 231
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=57.42 E-value=56 Score=23.43 Aligned_cols=69 Identities=19% Similarity=0.089 Sum_probs=38.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 023865 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLR 249 (276)
Q Consensus 174 aG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLL 249 (276)
.+..++.+=.-.+++..|-.++. . .+ ..++..-++|+...|. ++++....++....++..+|..|-+.|
T Consensus 19 ~a~~~L~~~~~~~~~~~L~~~l~--d-~~---~~vr~~a~~aL~~i~~-~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 19 EAARALGELGDPEAIPALIELLK--D-ED---PMVRRAAARALGRIGD-PEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHCCTHHHHHHHHHHHHT--S-SS---HHHHHHHHHHHHCCHH-HHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHhHHHHHHHHHc--C-CC---HHHHHHHHHHHHHhCC-HHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 34455555555667777776663 1 11 2477777777777764 445555555442445556677766554
No 232
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=57.20 E-value=40 Score=34.05 Aligned_cols=89 Identities=18% Similarity=0.231 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCC---Cc-----------------hHH----------------
Q 023865 164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT---FF-----------------GGE---------------- 207 (276)
Q Consensus 164 ~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS---~l-----------------GGE---------------- 207 (276)
.+......++.|-+++..|.+..||..|-.++...+... +. |..
T Consensus 200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~ 279 (422)
T PF06957_consen 200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQ 279 (422)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhH
Confidence 345556688899999999999999999988887655332 11 000
Q ss_pred -----------------------HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhc
Q 023865 208 -----------------------IQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQ 253 (276)
Q Consensus 208 -----------------------AQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILE 253 (276)
.|..|-++| ++++.--|-.+++.|.+..|.+.+.+||+++|.-=|
T Consensus 280 kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~-K~KNf~tAa~FArRLLel~p~~~~a~qArKil~~~e 347 (422)
T PF06957_consen 280 KRNLELAAYFTHCKLQPSHLILALRSAMSQAF-KLKNFITAASFARRLLELNPSPEVAEQARKILQACE 347 (422)
T ss_dssp HHHHHHHHHHCCS---HHHHHHHHHHHHHHCC-CTTBHHHHHHHHHHHHCT--SCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 011111122 456777889999999999999999999999988655
No 233
>PRK11906 transcriptional regulator; Provisional
Probab=56.76 E-value=82 Score=32.33 Aligned_cols=67 Identities=12% Similarity=0.079 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH-HHHhCCCH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQ-LESNHPSK 239 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~-L~~~HPd~ 239 (276)
+...+-.|..-.-.|+|..|+.+|+.|....|. +. .+.++.+...--+|+.+.|+..-+. |. -.|..
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A---~~~~~~~~~~~~~G~~~~a~~~i~~alr-LsP~~ 405 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IA---SLYYYRALVHFHNEKIEEARICIDKSLQ-LEPRR 405 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cH---HHHHHHHHHHHHcCCHHHHHHHHHHHhc-cCchh
Confidence 556677777777778899999999999885444 33 4888888888889999999998888 54 66654
No 234
>TIGR02498 type_III_ssaH type III secretion system protein, SsaH family. This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic E. coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterized as part of the apparatus or as an effector protein.
Probab=56.70 E-value=54 Score=26.40 Aligned_cols=60 Identities=20% Similarity=0.192 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQ 231 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~ 231 (276)
.+...++|.++.-.|-+.+|-.+|...=...|-... .-+..++-|-|.|+..+|+++-..
T Consensus 6 ~~L~VEaalAavNH~L~~ea~ailnalP~li~D~~~----r~vcea~llfGL~~~~~A~~~L~~ 65 (79)
T TIGR02498 6 NKLVVEAALAAVNHSLPKEAHSILNALPQIIPDKKD----RLVCEAILLFGLNHKNDAVKLLEN 65 (79)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHHhcccccCCHhH----HHHHHHHHHHhcCcHHHHHHHHhc
Confidence 467889999999999999999999875565554444 667889999999999999987655
No 235
>PLN03077 Protein ECB2; Provisional
Probab=56.09 E-value=52 Score=34.25 Aligned_cols=60 Identities=13% Similarity=0.169 Sum_probs=44.1
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHhhhC-CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023865 172 FELGQKAY-GKGMYGRAIEFLEGALTII-PRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (276)
Q Consensus 172 yeaG~aAL-erGdY~qAIelLE~Al~~~-~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~ 235 (276)
|..-..+| ..|++..|+++|+.....- .++.. ....|..||...|..++|..+++.+.+.
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~----T~~~ll~a~~~~g~v~ea~~~f~~M~~~ 618 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV----TFISLLCACSRSGMVTQGLEYFHSMEEK 618 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc----cHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence 33434444 6899999999999877532 23322 5667778999999999999999999844
No 236
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=55.61 E-value=1.5e+02 Score=26.38 Aligned_cols=84 Identities=12% Similarity=-0.003 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQAA 246 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVRqQAK 246 (276)
.....+....|+..++-..+-.+|.. +....++.+ ++.+.-++-|...|+..+|+.+.+.|...-|+ |--+-=..
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdA-LrvLrP~~~---e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A 85 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDA-LRVLRPNLK---ELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLA 85 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH-HHHhCCCcc---ccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHH
Confidence 34456677788889999998888876 666666666 59999999999999999999999999965545 32222223
Q ss_pred HHHHhhcCC
Q 023865 247 DLRYILQAP 255 (276)
Q Consensus 247 qLLyILEAP 255 (276)
..|+.+.-|
T Consensus 86 ~CL~al~Dp 94 (153)
T TIGR02561 86 LCLNAKGDA 94 (153)
T ss_pred HHHHhcCCh
Confidence 334444443
No 237
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=54.92 E-value=1.4e+02 Score=26.45 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=49.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhCCCC---C--CchHHHHHH------HHHHHHHcCChHHHHHH-------------
Q 023865 173 ELGQKAYGKGMYGRAIEFLEGALTIIPRP---T--FFGGEIQIW------LAMAYEANNRHADCIAL------------- 228 (276)
Q Consensus 173 eaG~aALerGdY~qAIelLE~Al~~~~~n---S--~lGGEAQmw------LAtAYqa~Gq~EkAIAL------------- 228 (276)
-.|..|++.++.-.+|-++.+|++.+..- + .+--.+.|| ||.=|..+|+.+-.+..
T Consensus 6 llAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltLiP 85 (140)
T PF10952_consen 6 LLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTLIP 85 (140)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHhcc
Confidence 45778999999888888888887655422 1 112234444 66778999998765433
Q ss_pred ----------------HHH----HHHhCCCHHHHHHHHH
Q 023865 229 ----------------YKQ----LESNHPSKNIRRQAAD 247 (276)
Q Consensus 229 ----------------CQ~----L~~~HPd~qVRqQAKq 247 (276)
|+. ..++||||.|.++-+.
T Consensus 86 QCp~~~C~afi~sLGCCk~ALl~F~KRHPNP~iA~~vq~ 124 (140)
T PF10952_consen 86 QCPNTECEAFIDSLGCCKKALLDFMKRHPNPEIARLVQH 124 (140)
T ss_pred CCCCcchHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHh
Confidence 221 2248999999887654
No 238
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=54.88 E-value=24 Score=36.78 Aligned_cols=48 Identities=25% Similarity=0.334 Sum_probs=37.3
Q ss_pred HHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 187 AIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 187 AIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
|+=++.+|++.-|..++ +...|..+|+..|+.++||..|+.-+ ...+.
T Consensus 417 aLyYfqkA~~~kPnDsR----lw~aLG~CY~kl~~~~eAiKCykrai-~~~dt 464 (559)
T KOG1155|consen 417 ALYYFQKALELKPNDSR----LWVALGECYEKLNRLEEAIKCYKRAI-LLGDT 464 (559)
T ss_pred HHHHHHHHHhcCCCchH----HHHHHHHHHHHhccHHHHHHHHHHHH-hcccc
Confidence 44456666665555554 78889999999999999999999888 67666
No 239
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=54.42 E-value=80 Score=26.61 Aligned_cols=30 Identities=13% Similarity=0.190 Sum_probs=25.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhhCCCCCC
Q 023865 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTF 203 (276)
Q Consensus 174 aG~aALerGdY~qAIelLE~Al~~~~~nS~ 203 (276)
.++.+|.+|+|-.|++++|..|........
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~ 31 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDES 31 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCc
Confidence 467899999999999999999987776654
No 240
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=54.35 E-value=44 Score=31.88 Aligned_cols=56 Identities=23% Similarity=0.198 Sum_probs=23.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 023865 173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQL 232 (276)
Q Consensus 173 eaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L 232 (276)
+.|.=|++.|+.++|-.+|..++...+.+-+ +..-|+.-....|+.-.|..++...
T Consensus 144 N~G~Cal~~gq~~~A~~~l~raL~~dp~~~~----~~l~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 144 NLGLCALKAGQFDQAEEYLKRALELDPQFPP----ALLELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred hhHHHHhhcCCchhHHHHHHHHHHhCcCCCh----HHHHHHHHHHhcccchHHHHHHHHH
Confidence 3344444444444444444444443333322 3344444444444444444444333
No 241
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=54.08 E-value=36 Score=20.29 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 208 IQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 208 AQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
..-.++.||-..|+.+.|..+++.+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34578899999999999999999988
No 242
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=53.99 E-value=1.2e+02 Score=31.63 Aligned_cols=30 Identities=23% Similarity=0.473 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCc
Q 023865 105 MRRRVKEIEEMRELEKKAEELQSKAEEDDS 134 (276)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (276)
+++-++.++.++-.|...+.||.+++...+
T Consensus 244 v~km~kdle~Lq~aEqsl~dlQk~Lekar~ 273 (575)
T KOG4403|consen 244 VNKMMKDLEGLQRAEQSLEDLQKRLEKARE 273 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888889999999999987765
No 243
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=53.83 E-value=38 Score=34.47 Aligned_cols=38 Identities=13% Similarity=0.161 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCC
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF 203 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~ 203 (276)
......|..+...|..++|.+|++....|+..+.|++-
T Consensus 517 ~~V~~~f~~Ae~lF~~~~Y~~al~~~~~alE~vePG~~ 554 (569)
T PRK04778 517 EEVAEALNEAERLFREYDYKAALEIIATALEKVEPGVT 554 (569)
T ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHhhCCcHH
Confidence 34567899999999999999999999999988887754
No 244
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=53.55 E-value=40 Score=35.50 Aligned_cols=66 Identities=23% Similarity=0.238 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHH-HHHHHHHhCCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIA-LYKQLESNHPS 238 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIA-LCQ~L~~~HPd 238 (276)
++.=...|..-.+.++=..||.-|..|+++.|.|.. |.|.||..|-..|-...|.. ||.+|. .||-
T Consensus 319 aeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nle----aLmaLAVSytNeg~q~~Al~~L~~Wi~-~~p~ 385 (579)
T KOG1125|consen 319 AEAWQKLGITQAENENEQNAISALRRCLELDPTNLE----ALMALAVSYTNEGLQNQALKMLDKWIR-NKPK 385 (579)
T ss_pred HHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHH----HHHHHHHHHhhhhhHHHHHHHHHHHHH-hCcc
Confidence 566677899999999999999999999998887765 99999999999998877765 677777 6653
No 245
>PF10304 DUF2411: Domain of unknown function (DUF2411); InterPro: IPR019414 This entry represents a 38 residue domain of unknown function that is found at the extreme C-terminal end of some HEAT repeats.
Probab=53.49 E-value=40 Score=22.85 Aligned_cols=29 Identities=28% Similarity=0.233 Sum_probs=23.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhcC
Q 023865 226 IALYKQLESNHPSKNIRRQAADLRYILQA 254 (276)
Q Consensus 226 IALCQ~L~~~HPd~qVRqQAKqLLyILEA 254 (276)
..+-+.+..+-+|+-+|.+|+.+|..|++
T Consensus 7 ~r~Lk~V~~~D~D~lvr~hA~~~Le~Le~ 35 (36)
T PF10304_consen 7 YRTLKYVESTDNDDLVREHAQDALEELEA 35 (36)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHhc
Confidence 34445556678999999999999999985
No 246
>cd08977 SusD starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.
Probab=53.38 E-value=44 Score=30.86 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHhhhCCCCCCc-------------hHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHH
Q 023865 183 MYGRAIEFLEGALTIIPRPTFF-------------GGEIQIWLAMAYEANN-----RHADCIALYKQLES 234 (276)
Q Consensus 183 dY~qAIelLE~Al~~~~~nS~l-------------GGEAQmwLAtAYqa~G-----q~EkAIALCQ~L~~ 234 (276)
-|...++-|+.|++..+..... -+-|..+++++|.-.| +.++|++.|..++.
T Consensus 140 vy~~i~~dL~~A~~~L~~~~~~~~~~~~~~~~r~~k~aA~al~ar~~L~~~~~~~~~~~~A~~~~~~vi~ 209 (359)
T cd08977 140 VYTQILADLDEAIALLPEASSAQDFYIYFGDGRAWKKAARALLARVYLYLANYTAADYAEALTAAEKSFK 209 (359)
T ss_pred HHHHHHHHHHHHHHhccccccccccccccCcchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 4777888888888877644221 1246667788888888 89999999999993
No 247
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.65 E-value=36 Score=33.03 Aligned_cols=58 Identities=26% Similarity=0.249 Sum_probs=37.2
Q ss_pred hcCCHHHHHHHHHHHhhhCCCCCCchH------------------------------HHHHHHHHHHHHcCChHHHHHHH
Q 023865 180 GKGMYGRAIEFLEGALTIIPRPTFFGG------------------------------EIQIWLAMAYEANNRHADCIALY 229 (276)
Q Consensus 180 erGdY~qAIelLE~Al~~~~~nS~lGG------------------------------EAQmwLAtAYqa~Gq~EkAIALC 229 (276)
..|+|+.|+++++..++..|.++-..- +++-.|+--|-..|+.++|+=+|
T Consensus 98 a~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred HhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 468888888888888887766654221 45555666666666666666666
Q ss_pred HHHHHhCC
Q 023865 230 KQLESNHP 237 (276)
Q Consensus 230 Q~L~~~HP 237 (276)
.++.-..|
T Consensus 178 EE~ll~~P 185 (289)
T KOG3060|consen 178 EELLLIQP 185 (289)
T ss_pred HHHHHcCC
Confidence 66554444
No 248
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=51.85 E-value=77 Score=33.23 Aligned_cols=77 Identities=9% Similarity=0.002 Sum_probs=58.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCC---CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIP---RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~---~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq 247 (276)
.+..|..-=+-++|.+|.+++|+++.... .-++.-.++.+|||+=+-+.++.++|-..|-... .. ....+.|+.
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~-~~--~~e~eeak~ 545 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL-KG--ETECEEAKA 545 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh-cC--CchHHHHHH
Confidence 44455555566899999999999997442 3344445899999999999999999999888887 44 556777888
Q ss_pred HHH
Q 023865 248 LRY 250 (276)
Q Consensus 248 LLy 250 (276)
|+-
T Consensus 546 LlR 548 (559)
T KOG1155|consen 546 LLR 548 (559)
T ss_pred HHH
Confidence 754
No 249
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=51.42 E-value=68 Score=35.09 Aligned_cols=93 Identities=18% Similarity=0.147 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH--------
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK-------- 239 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~-------- 239 (276)
....+..+..--.+|+...|+.+||.++...|.... ..|.|-+.|...|+.+.|...|-+=++.||+.
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~K----l~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLa 726 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHK----LWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLA 726 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHH----HHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHH
Confidence 344556666667789999999999999996665554 89999999999999999999998877789984
Q ss_pred ---HHHHHHHHHHHhhcCCCCCCCcccc
Q 023865 240 ---NIRRQAADLRYILQAPKLKISQEEM 264 (276)
Q Consensus 240 ---qVRqQAKqLLyILEAPkLkrp~eW~ 264 (276)
+..-+--+...||+--+|+-|.+-.
T Consensus 727 kleEk~~~~~rAR~ildrarlkNPk~~~ 754 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARLKNPKNAL 754 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHhcCCCcch
Confidence 2222445668899988998888743
No 250
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=50.84 E-value=77 Score=26.04 Aligned_cols=59 Identities=19% Similarity=0.078 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHH
Q 023865 154 LEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAY 216 (276)
Q Consensus 154 L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAY 216 (276)
++..+.+.-..--.|+..+-.++.+.+.|+|..|-++|+.+-+.. ..+-++|.-|.+.-
T Consensus 6 le~~~~~II~~aG~Ars~~~eAl~~ak~gdf~~A~~~l~eA~~~l----~~AH~~qt~liq~E 64 (104)
T PRK09591 6 LQVAAFEIILHSGNARTEVHEAFAAMREGNFDLAEQKLNQSNEEL----LEAHHAQTKLLQEY 64 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 555565544445568999999999999999999999999976632 22334555555433
No 251
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=50.61 E-value=88 Score=34.80 Aligned_cols=55 Identities=31% Similarity=0.415 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 023865 103 KEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQ 161 (276)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~~a~~~ 161 (276)
+..++-|.++++|-+..+.+||-|.+..++.- +-+.|++++...+..+++-|++.
T Consensus 210 kk~~Kgv~~~qe~La~~qe~eE~qkreeEE~~----r~eeEEer~~ee~E~~~eEak~k 264 (1064)
T KOG1144|consen 210 KKKPKGVRAMQEALAKRQEEEERQKREEEERL----RREEEEERRREEEEAQEEEAKEK 264 (1064)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556689999999988889988888777653 33444444444444444444433
No 252
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=49.94 E-value=1.9e+02 Score=29.58 Aligned_cols=81 Identities=17% Similarity=0.249 Sum_probs=55.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023865 100 DWEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAY 179 (276)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~~a~~~a~~~e~ae~~yeaG~aAL 179 (276)
...+|+++-|.-+.+|+.+-.+-++=...+-..= ++++++|.+.+ +.|+|-.++++.++...+.-+.|+
T Consensus 13 yvdeEik~Al~GvKqMK~~Mek~eeeh~~Lm~tL------~k~kk~KeeAl-----~l~~e~e~kLee~e~~Cn~sm~~l 81 (436)
T PF01093_consen 13 YVDEEIKNALNGVKQMKTMMEKTEEEHKELMKTL------EKSKKEKEEAL-----KLANEVEEKLEEEEEVCNESMMAL 81 (436)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH------HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5668899999999999998655555333333222 45556655533 456666777888888888888877
Q ss_pred hcCCHHHHHHHHHHHh
Q 023865 180 GKGMYGRAIEFLEGAL 195 (276)
Q Consensus 180 erGdY~qAIelLE~Al 195 (276)
+..|-.-|+..|
T Consensus 82 ----WeECkpCL~~tC 93 (436)
T PF01093_consen 82 ----WEECKPCLKQTC 93 (436)
T ss_pred ----HHHHHHHHHHHh
Confidence 787777777766
No 253
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.75 E-value=65 Score=34.38 Aligned_cols=63 Identities=19% Similarity=0.248 Sum_probs=48.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHH
Q 023865 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIR 242 (276)
Q Consensus 172 yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVR 242 (276)
|+.+--+|+.+.-+.|+..+.. ....++ .++-+-|+....+|+.++|..+|+.|. +|......
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~~----~~~~~~---~ll~L~AQvlYrl~~ydealdiY~~L~-kn~~dd~d 145 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLKG----LDRLDD---KLLELRAQVLYRLERYDEALDIYQHLA-KNNSDDQD 145 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHhc----ccccch---HHHHHHHHHHHHHhhHHHHHHHHHHHH-hcCCchHH
Confidence 4777788999999999999883 223333 377777888899999999999999998 45444433
No 254
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=48.87 E-value=37 Score=21.25 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=17.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhh
Q 023865 228 LYKQLESNHPSKNIRRQAADLRYIL 252 (276)
Q Consensus 228 LCQ~L~~~HPd~qVRqQAKqLLyIL 252 (276)
...++. ++|++.||..|-..|..+
T Consensus 4 ~l~~~l-~D~~~~VR~~a~~~l~~i 27 (31)
T PF02985_consen 4 ILLQLL-NDPSPEVRQAAAECLGAI 27 (31)
T ss_dssp HHHHHH-T-SSHHHHHHHHHHHHHH
T ss_pred HHHHHc-CCCCHHHHHHHHHHHHHH
Confidence 345666 799999999999877654
No 255
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=48.83 E-value=1.1e+02 Score=31.30 Aligned_cols=37 Identities=14% Similarity=0.217 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhhCCCCCC
Q 023865 167 TAQLMFELGQKAYGK-GMYGRAIEFLEGALTIIPRPTF 203 (276)
Q Consensus 167 ~ae~~yeaG~aALer-GdY~qAIelLE~Al~~~~~nS~ 203 (276)
.....+..+..+|.+ |+|.+|++....|+..+.|++.
T Consensus 514 ~v~~al~~Ae~~F~~~~~Y~~ALe~i~~alE~vePG~~ 551 (560)
T PF06160_consen 514 EVDEALTEAEDLFRNEYDYEKALETIATALEKVEPGAY 551 (560)
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCHH
Confidence 355678899999999 9999999999999998888754
No 256
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=48.56 E-value=57 Score=33.45 Aligned_cols=31 Identities=26% Similarity=0.504 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRP 201 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~n 201 (276)
.-+.|-.-|.||.|.+||.-+-..+...|-|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~N 130 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHN 130 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCC
Confidence 4556888999999999999999999977744
No 257
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.45 E-value=1.7e+02 Score=27.44 Aligned_cols=80 Identities=14% Similarity=0.137 Sum_probs=62.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCHHHHHHHHHHH
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN-HPSKNIRRQAADLR 249 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~-HPd~qVRqQAKqLL 249 (276)
.+.++-.....|.|.+....+|+... ..++.-.-++=.|..|-...|+..+|.+++++|.+- .....||+.|+-+|
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~---d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprnirqRAq~ml 211 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAG---DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNIRQRAQIML 211 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccC---CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHHHHHHHHHH
Confidence 56778888999999999999999554 233333468888999999999999999999999832 22346888888887
Q ss_pred Hhhc
Q 023865 250 YILQ 253 (276)
Q Consensus 250 yILE 253 (276)
..+.
T Consensus 212 dlI~ 215 (221)
T COG4649 212 DLID 215 (221)
T ss_pred HHHh
Confidence 7654
No 258
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=48.32 E-value=50 Score=36.43 Aligned_cols=84 Identities=14% Similarity=0.006 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhc----C---CHHHHHHHHHHHhhhCCCCCCchHHHHHHHHH
Q 023865 150 VRRELEKVAKEQAERR--------ATAQLMFELGQKAYGK----G---MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAM 214 (276)
Q Consensus 150 v~~~L~~~a~~~a~~~--------e~ae~~yeaG~aALer----G---dY~qAIelLE~Al~~~~~nS~lGGEAQmwLAt 214 (276)
+..||=.+|-..=+|. |-.+..|.+|.+-|++ | .|.+|+.-|+..-. |+..--=.+..|.
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 560 (932)
T PRK13184 486 LAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-----GVGAPLEYLGKAL 560 (932)
T ss_pred HhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-----CCCCchHHHhHHH
Confidence 4455666665554443 4467888899888875 3 58888888888433 2222236788999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCC
Q 023865 215 AYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 215 AYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
+||..|+.++=|..|.--.+++|+
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~ 584 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQ 584 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCC
Confidence 999999999999888765556664
No 259
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.26 E-value=1.9e+02 Score=29.98 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq 247 (276)
.+..+..+---|-|--|++||..+..++. .++...-+-.+||.+|...-=.+=+-.+-.--..+|||+-+..+-+-
T Consensus 151 ~EdqLSLAsvhYmR~HYQeAIdvYkrvL~----dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLka 226 (557)
T KOG3785|consen 151 LEDQLSLASVHYMRMHYQEAIDVYKRVLQ----DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKA 226 (557)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHh----cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHH
Confidence 34566667778889999999999999988 45555568889999999988777666665554459999998876543
No 260
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=47.53 E-value=29 Score=27.36 Aligned_cols=29 Identities=17% Similarity=0.024 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~ 196 (276)
|-...+.|+.+=+.|+-.+||.++++++.
T Consensus 8 A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 8 AFEEISKALRADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 34445555556566665555555555443
No 261
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=46.58 E-value=55 Score=33.31 Aligned_cols=61 Identities=21% Similarity=0.311 Sum_probs=37.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 173 eaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
+.|+--|.-|.|++|-.+|...++..+... ..++|+.+|+..-|-..|+-++.+-.+.+|.
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~~d-----TfllLskvY~ridQP~~AL~~~~~gld~fP~ 288 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHPD-----TFLLLSKVYQRIDQPERALLVIGEGLDSFPF 288 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCchh-----HHHHHHHHHHHhccHHHHHHHHhhhhhcCCc
Confidence 457777778888888888887777555332 3455555555555555555555554445543
No 262
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=46.42 E-value=1e+02 Score=21.99 Aligned_cols=47 Identities=19% Similarity=0.158 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCC
Q 023865 207 EIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAP 255 (276)
Q Consensus 207 EAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILEAP 255 (276)
.++...+.+....| ..+++.....+. ++|++.||.+|-..|..+..|
T Consensus 15 ~vr~~a~~~L~~~~-~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~~~ 61 (88)
T PF13646_consen 15 QVRAEAARALGELG-DPEAIPALIELL-KDEDPMVRRAAARALGRIGDP 61 (88)
T ss_dssp HHHHHHHHHHHCCT-HHHHHHHHHHHH-TSSSHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHcC-CHhHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCH
Confidence 47777777776665 568888888888 899999999999988876544
No 263
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=46.41 E-value=1.2e+02 Score=24.61 Aligned_cols=60 Identities=20% Similarity=0.010 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHH
Q 023865 154 LEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYE 217 (276)
Q Consensus 154 L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYq 217 (276)
++..+.+--..--.|+..+-.++.+.+.|+|..|-++|+.+-+.. ..+-++|.-|.+-..
T Consensus 3 ~e~~~~~iI~~aG~Ars~~~eAl~~a~~gdfe~A~~~l~eA~~~l----~~AH~~qt~liq~ea 62 (99)
T TIGR00823 3 MELVGFELIAYAGDARSKALEALKAAKAGDFAKARALVEQAGMCL----NEAHLAQTSLLAQEA 62 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 445555444444568899999999999999999999999876633 223346666654433
No 264
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=46.21 E-value=46 Score=34.63 Aligned_cols=37 Identities=30% Similarity=0.400 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCC
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF 203 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~ 203 (276)
++.--|-.|.-.|.+.+|++|+.+-|+++...+.+.+
T Consensus 299 ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~ 335 (564)
T KOG1174|consen 299 TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHE 335 (564)
T ss_pred chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccch
Confidence 4555677888899999999999999999987666655
No 265
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=45.89 E-value=63 Score=33.07 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=32.8
Q ss_pred CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865 203 FFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (276)
Q Consensus 203 ~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (276)
+-..++.+-|+.||...|+.++||+.|++-+.-.|+..
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a 109 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD 109 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Confidence 34458999999999999999999999999665889865
No 266
>PRK10941 hypothetical protein; Provisional
Probab=45.76 E-value=1.7e+02 Score=27.56 Aligned_cols=73 Identities=12% Similarity=0.097 Sum_probs=58.2
Q ss_pred HHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcC
Q 023865 178 AYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQA 254 (276)
Q Consensus 178 ALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILEA 254 (276)
.++.++|..|+...|.++...|..-. +++ =-...|+..|....|+.=++....+||+...+.--|..+.-|+.
T Consensus 191 ~~~~~~~~~AL~~~e~ll~l~P~dp~---e~R-DRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~~ 263 (269)
T PRK10941 191 LMEEKQMELALRASEALLQFDPEDPY---EIR-DRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIEQ 263 (269)
T ss_pred HHHcCcHHHHHHHHHHHHHhCCCCHH---HHH-HHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHhh
Confidence 46889999999999999986664432 122 13556999999999999888888899999998888888877764
No 267
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=44.81 E-value=51 Score=35.81 Aligned_cols=65 Identities=18% Similarity=0.130 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (276)
...-|..|-.|++-++|+.|+..|-.+++..|. ++++.--|++||...|+..+|-...+.-. +|.
T Consensus 519 ~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd----~~eaWnNls~ayi~~~~k~ra~~~l~EAl-Kcn 583 (777)
T KOG1128|consen 519 LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD----NAEAWNNLSTAYIRLKKKKRAFRKLKEAL-KCN 583 (777)
T ss_pred hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC----chhhhhhhhHHHHHHhhhHHHHHHHHHHh-hcC
Confidence 456788899999999999999999999985544 45699999999999999999887777665 443
No 268
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=44.50 E-value=1.7e+02 Score=24.99 Aligned_cols=57 Identities=14% Similarity=0.110 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHH
Q 023865 184 YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQA 245 (276)
Q Consensus 184 Y~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQA 245 (276)
-...+++.++++...| ...+..-++.++..+|+.++|..+.++...-+|..+.++|.
T Consensus 127 l~~~~~~a~~~l~~~P-----~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~~~~~~ 183 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-----DPNVYQRYALALALLGDPEEARQWLARARRLYPADEFAAAQ 183 (193)
T ss_pred HHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 3444555666555333 22466677999999999999999999999889977777765
No 269
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=43.66 E-value=41 Score=33.72 Aligned_cols=53 Identities=23% Similarity=0.256 Sum_probs=40.8
Q ss_pred hcCCHHHHHHHHHHHhhhCCC-----CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 180 GKGMYGRAIEFLEGALTIIPR-----PTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 180 erGdY~qAIelLE~Al~~~~~-----nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
--|||.+|++.|++ ++.... ......-+.+.+..||.=.+|..+||..+..+.
T Consensus 134 LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 134 LLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred hccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35999999999998 433221 133344678899999999999999999988765
No 270
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=43.57 E-value=54 Score=34.27 Aligned_cols=72 Identities=19% Similarity=0.099 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCch--HHHHHHHHHHHHHcCChHHHHHHHH
Q 023865 159 KEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG--GEIQIWLAMAYEANNRHADCIALYK 230 (276)
Q Consensus 159 ~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lG--GEAQmwLAtAYqa~Gq~EkAIALCQ 230 (276)
.|.-.|-..|+.-|..|-+-+--.+|..||.++-.-+++.+.-.+.- +.+-.-|..||-+.|.+++|+-...
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 33344445577777777777777789999998887776555322222 3566779999999999999986654
No 271
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.06 E-value=51 Score=31.93 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHHhhhCCCC-CCchHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCHHHHHHHH
Q 023865 182 GMYGRAIEFLEGALTIIPRP-TFFGGEIQIWLAMAYEA-NNRHADCIALYKQLESNHPSKNIRRQAA 246 (276)
Q Consensus 182 GdY~qAIelLE~Al~~~~~n-S~lGGEAQmwLAtAYqa-~Gq~EkAIALCQ~L~~~HPd~qVRqQAK 246 (276)
.+|.+||.++|++.+..... +.....==++.|-.|.+ .|+..+||.+|.++....-+..+-+|+-
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~ 194 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSA 194 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHH
Confidence 48899999999999876643 22222233444555554 6999999999999995555667777754
No 272
>smart00748 HEPN Higher Eukarytoes and Prokaryotes Nucleotide-binding domain.
Probab=43.04 E-value=35 Score=26.67 Aligned_cols=30 Identities=23% Similarity=0.249 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGAL 195 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al 195 (276)
+.|+..++.+...++.|.|..|+-+..+++
T Consensus 2 ~~A~~~l~~A~~~~~~g~y~~a~f~aqqav 31 (113)
T smart00748 2 RRAKRFLEAAKLDLEKGFYDLAAFLSQQAA 31 (113)
T ss_pred chHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 457788999999999999987766555554
No 273
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=42.58 E-value=3.3e+02 Score=26.45 Aligned_cols=34 Identities=38% Similarity=0.707 Sum_probs=28.1
Q ss_pred ccHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhcc
Q 023865 99 YDWEKEMRRRVKEIEEMR-ELEKKAEELQSKAEED 132 (276)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 132 (276)
+-||+.+-..||.-|-|| +.+||-..|+..-..+
T Consensus 91 yaWEKKLY~EVKa~E~~r~~yeKK~~~Lr~~d~kg 125 (312)
T PF04782_consen 91 YAWEKKLYDEVKAEEKLRIEYEKKCKQLRKQDAKG 125 (312)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHhCC
Confidence 789999999999999987 6788888887654433
No 274
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.07 E-value=1.1e+02 Score=29.75 Aligned_cols=76 Identities=22% Similarity=0.229 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCc--hHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF--GGEIQIWLAMAYEAN-NRHADCIALYKQLESNHPSKNIRR 243 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~l--GGEAQmwLAtAYqa~-Gq~EkAIALCQ~L~~~HPd~qVRq 243 (276)
+-..|-.+-..|.+++-..||.-|+.++++.-.-.++ +..-.+-++--|+.- -+.++||+.|++-.+=+...+.-.
T Consensus 73 aat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~s 151 (288)
T KOG1586|consen 73 AATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVS 151 (288)
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 5567888889999999999999999999876543332 334445788889887 899999999998765555444433
No 275
>PRK09687 putative lyase; Provisional
Probab=41.84 E-value=1.2e+02 Score=28.17 Aligned_cols=76 Identities=7% Similarity=-0.155 Sum_probs=56.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCCh----HHHHHHHHHHHHhCCCHHHHHHHHHH
Q 023865 173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRH----ADCIALYKQLESNHPSKNIRRQAADL 248 (276)
Q Consensus 173 eaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~----EkAIALCQ~L~~~HPd~qVRqQAKqL 248 (276)
..+..+|.+-.-.+++..+..++... + ..++...|.+.-..|.. ++++.+...+..++|++.||..|-..
T Consensus 41 ~~A~~aL~~~~~~~~~~~l~~ll~~~---d---~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~a 114 (280)
T PRK09687 41 ISSIRVLQLRGGQDVFRLAIELCSSK---N---PIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAINA 114 (280)
T ss_pred HHHHHHHHhcCcchHHHHHHHHHhCC---C---HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 34666676666677778877765411 2 35889999888888874 56888888774489999999999999
Q ss_pred HHhhcC
Q 023865 249 RYILQA 254 (276)
Q Consensus 249 LyILEA 254 (276)
|.-+-.
T Consensus 115 LG~~~~ 120 (280)
T PRK09687 115 TGHRCK 120 (280)
T ss_pred Hhcccc
Confidence 988854
No 276
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=41.65 E-value=71 Score=24.51 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGG 206 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGG 206 (276)
.-..+..|...+..|++..|+..|+.++.......+..+
T Consensus 41 ~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~ 79 (94)
T PF12862_consen 41 AYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRC 79 (94)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHH
Confidence 334778888899999999999999999998887766533
No 277
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=41.58 E-value=2.3e+02 Score=33.58 Aligned_cols=102 Identities=18% Similarity=0.208 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHc
Q 023865 142 TEEEKRMRVRRELEKVA--KEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN 219 (276)
Q Consensus 142 ~~~~~~~rv~~~L~~~a--~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~ 219 (276)
+|.|+.++|.++-=+.- +|..+.+-..-..++. +.||. .=..+-+-||.||+++.+.+ +..-|.--|+..
T Consensus 1472 sEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNl-En~yG--~eesl~kVFeRAcqycd~~~-----V~~~L~~iy~k~ 1543 (1710)
T KOG1070|consen 1472 SEIEKARKIAERALKTINFREEEEKLNIWIAYLNL-ENAYG--TEESLKKVFERACQYCDAYT-----VHLKLLGIYEKS 1543 (1710)
T ss_pred hhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhH-HHhhC--cHHHHHHHHHHHHHhcchHH-----HHHHHHHHHHHh
Q ss_pred CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 023865 220 NRHADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (276)
Q Consensus 220 Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyIL 252 (276)
++.++|+.+++...+++. .+.+-|-...=+.|
T Consensus 1544 ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl 1575 (1710)
T KOG1070|consen 1544 EKNDEADELLRLMLKKFG-QTRKVWIMYADFLL 1575 (1710)
T ss_pred hcchhHHHHHHHHHHHhc-chhhHHHHHHHHHh
No 278
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=41.46 E-value=76 Score=28.03 Aligned_cols=54 Identities=20% Similarity=0.266 Sum_probs=38.6
Q ss_pred HHhcCCHHHHHHHHHHHhhhCCC----CCCchHHHH----HHHHHHHHHcCChHHHHHHHHHH
Q 023865 178 AYGKGMYGRAIEFLEGALTIIPR----PTFFGGEIQ----IWLAMAYEANNRHADCIALYKQL 232 (276)
Q Consensus 178 ALerGdY~qAIelLE~Al~~~~~----nS~lGGEAQ----mwLAtAYqa~Gq~EkAIALCQ~L 232 (276)
--.-|+|.+|+..-+.++.+.+. +... |..+ +--+.|+++.|+.++|+.-++.-
T Consensus 65 ~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde-GklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 65 LAGLGRYDECLQSADRALRYFNRRGELHQDE-GKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHH--TTSTH-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHHhhcccccccc-chhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 34679999999999999988773 3332 3333 33467899999999999988753
No 279
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=41.12 E-value=95 Score=34.36 Aligned_cols=64 Identities=9% Similarity=0.005 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
........+...|+|++|+++++.+++..|..-. +.+.++..|...++..+|..+ +-|. .++..
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~----~yy~~G~l~~q~~~~~~~~lv-~~l~-~~~~~ 96 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKEHKKSIS----ALYISGILSLSRRPLNDSNLL-NLID-SFSQN 96 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCccee----hHHHHHHHHHhhcchhhhhhh-hhhh-hcccc
Confidence 3444555666999999999999988885554444 899999999999999999888 4443 45443
No 280
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.72 E-value=2.4e+02 Score=26.57 Aligned_cols=76 Identities=13% Similarity=0.055 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL 248 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqL 248 (276)
.|.+++..-.-|.-+.|+.-|..+-+.--.+.+ .-++|.+++..-..|+++.|++.+-.+..-.|.|++-+...+|
T Consensus 61 ~flaAL~lA~~~k~d~Alaaf~~lektg~g~Yp--vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 61 AFLAALKLAQENKTDDALAAFTDLEKTGYGSYP--VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCcch--HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 444444444555556666666654443333333 2466666666666677777777776666666666666555555
No 281
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=40.51 E-value=34 Score=26.15 Aligned_cols=54 Identities=19% Similarity=0.161 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhc
Q 023865 183 MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQ 253 (276)
Q Consensus 183 dY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILE 253 (276)
+-.++++.|...- ..+.+-..=.. +. .-..-..|. +||+++|+.-|+.|+..+.
T Consensus 17 ~~~~~l~~L~~L~-~~~~t~~~L~~--------------T~-iG~~v~~Lr-kh~~~~I~~~A~~Li~~WK 70 (75)
T smart00509 17 EVSRCLDILKKLK-KLPITVDLLEE--------------TR-IGKKVNGLR-KHKNEEIRKLAKKLIKSWK 70 (75)
T ss_pred CHHHHHHHHHHHh-cCCCCHHHHHH--------------Cc-HHHHHHHHH-cCCcHHHHHHHHHHHHHHH
Confidence 4566777777743 35544332111 21 112356788 8999999999999987653
No 282
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=40.12 E-value=1.9e+02 Score=29.58 Aligned_cols=70 Identities=20% Similarity=0.159 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHH-hcCCHHHHHHHHHHHhhhCCCC--CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 168 AQLMFELGQKAY-GKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 168 ae~~yeaG~aAL-erGdY~qAIelLE~Al~~~~~n--S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
|...|+-|.--| +--+++.|-.+|++++.....+ ..+=-.++..|+..|...|... |+.+|+..+..+-+
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET 131 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence 555666666666 6678899999999988777653 2223577888899999999888 88888887744433
No 283
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.89 E-value=91 Score=32.97 Aligned_cols=65 Identities=18% Similarity=0.246 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhhhCCCCCCchHHHHH-------------HHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 023865 184 YGRAIEFLEGALTIIPRPTFFGGEIQI-------------WLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRY 250 (276)
Q Consensus 184 Y~qAIelLE~Al~~~~~nS~lGGEAQm-------------wLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLy 250 (276)
|+--|+.|+.+.++....++-+-+.|+ ++|.+|++.++.-+|.+||-.-. ..+++.+.
T Consensus 387 Yd~iiknl~e~~elPG~~~D~~l~sqle~~~~~fkafRC~~iA~sY~a~~K~~EAlALy~Ra~---------sylqe~~~ 457 (593)
T KOG2460|consen 387 YDSIIKNLSEIMELPGLESDKELQSQLELKKLYFKAFRCFYIAVSYQAKKKYSEALALYVRAY---------SYLQEVNS 457 (593)
T ss_pred HHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHh
Confidence 666778888887877777777766554 67899999999999999997765 34666677
Q ss_pred hhcCCCC
Q 023865 251 ILQAPKL 257 (276)
Q Consensus 251 ILEAPkL 257 (276)
+|++++-
T Consensus 458 ~l~s~~e 464 (593)
T KOG2460|consen 458 ELESFKE 464 (593)
T ss_pred hhhchhh
Confidence 7776653
No 284
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=39.42 E-value=20 Score=30.01 Aligned_cols=55 Identities=22% Similarity=0.203 Sum_probs=32.5
Q ss_pred HHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 023865 177 KAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLR 249 (276)
Q Consensus 177 aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLL 249 (276)
.|+..|++.++=.++.+..... -.| -...|+...| --.|. +|||++||-||.-.+
T Consensus 17 ~A~~~~d~~~~Nr~~~k~~~~~-----------~eL---k~r~gd~r~a---Ll~LL-~hpn~~VRl~AA~~~ 71 (106)
T PF09450_consen 17 EAIDRGDARTANRLYDKMIRIY-----------DEL---KSRGGDQRDA---LLPLL-KHPNMQVRLWAAAHT 71 (106)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHH-----------HHH---HHSTT-GGGG---GGGGG-GSS-HHHHHHHHHTT
T ss_pred HHHHhccHHHHHHHHHHHHHHH-----------HHH---HhcCcchHHH---HHHHH-cCCChhHHHHHHHHH
Confidence 5788899999888888765521 111 0112233333 33566 799999999998753
No 285
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.23 E-value=54 Score=33.06 Aligned_cols=63 Identities=21% Similarity=0.257 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
+|....+.|---|+-|+|..|++.|..|++ +....++ +-+-+|.|+...||...|+.+--.|+
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlq-vsGyqpl---lAYniALaHy~~~qyasALk~iSEIi 205 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQ-VSGYQPL---LAYNLALAHYSSRQYASALKHISEII 205 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHh-hcCCCch---hHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 355677888889999999999999999888 4444443 77889999999999999999988887
No 286
>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.12 E-value=3.4e+02 Score=25.61 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023865 140 EETEEEKRMRVRRELEKVAKEQAERRAT 167 (276)
Q Consensus 140 ~~~~~~~~~rv~~~L~~~a~~~a~~~e~ 167 (276)
+..+++-|.+-+++|+.-=+.+-+.++.
T Consensus 127 ek~k~ElrekAkKelddwy~~~~ek~~k 154 (216)
T KOG4031|consen 127 EKLKEELREKAKKELDDWYDQQNEKLEK 154 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666655544444444
No 287
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=39.03 E-value=2.8e+02 Score=24.57 Aligned_cols=56 Identities=11% Similarity=-0.003 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcC---------------ChHHHHHHHHHHHHhCCCHHHHHHHH
Q 023865 183 MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN---------------RHADCIALYKQLESNHPSKNIRRQAA 246 (276)
Q Consensus 183 dY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~G---------------q~EkAIALCQ~L~~~HPd~qVRqQAK 246 (276)
++.+|+.+|..++..-. +.+++++. .+...| +...|..+++... ....+.....-+
T Consensus 206 d~~~A~~wy~~Aa~~g~------~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~ 276 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD------GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKAC-ELGFDNACEALR 276 (292)
T ss_pred CHHHHHHHHHHHHHCCC------HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHH-HcCChhHHHHHH
Confidence 88899999999887333 56888888 555555 7788888888887 566666665555
No 288
>PRK15356 type III secretion system protein SsaH; Provisional
Probab=37.80 E-value=63 Score=25.85 Aligned_cols=63 Identities=17% Similarity=0.322 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCC
Q 023865 182 GMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAPK 256 (276)
Q Consensus 182 GdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILEAPk 256 (276)
|--.+|-.+|...=.++|-... -.+..++-|-|.|+..+|+++-.... . .+|..|++++.+|.
T Consensus 8 ~L~~qa~aiLnvlPqLIpD~~~----r~vC~alllfGLne~~~A~~~La~~~----~----~eA~~Lr~lf~~~~ 70 (75)
T PRK15356 8 SLISQVHAMLPALTVIVPDKKL----QLVCLALLLAGLNEPLKAAKILSDID----L----PEAMALRLLFPAPN 70 (75)
T ss_pred chHHHHHHHHHhhhhhcCCHHH----HHHHHHHHHHhcCcHHHHHHHHhcCC----c----HHHHHHHHHhcCCc
Confidence 3345555666554444444333 45678899999999999998755443 3 47899999999874
No 289
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=37.68 E-value=1.8e+02 Score=28.20 Aligned_cols=104 Identities=17% Similarity=0.139 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC-----CC-----CCchH---------------HHHHHHHHHHHHcCCh
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIP-----RP-----TFFGG---------------EIQIWLAMAYEANNRH 222 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~-----~n-----S~lGG---------------EAQmwLAtAYqa~Gq~ 222 (276)
....++.+..+..+|++..|-+++|.|+=..+ .- +...| .+.+-.+.+....|-.
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~ 119 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCW 119 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcH
Confidence 45788999999999999999999999863322 11 12222 3344456788899999
Q ss_pred HHHHHHHHHHHHhCCCHH-------------HHHHHHHHHHhhcCCCCCCCcccccccCCCC
Q 023865 223 ADCIALYKQLESNHPSKN-------------IRRQAADLRYILQAPKLKISQEEMVTIPLIG 271 (276)
Q Consensus 223 EkAIALCQ~L~~~HPd~q-------------VRqQAKqLLyILEAPkLkrp~eW~v~IPdL~ 271 (276)
.-|..+||-|.+-.|..+ -.++-+-|+...+.|.-....+|...+|.+.
T Consensus 120 rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a 181 (360)
T PF04910_consen 120 RTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFA 181 (360)
T ss_pred HHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHH
Confidence 999999999996666511 1233444667777766655666776778653
No 290
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=37.33 E-value=66 Score=33.65 Aligned_cols=60 Identities=15% Similarity=0.078 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIA 227 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIA 227 (276)
|-..-.+|...+.-|+|+..|.+|++|++.-...-..=.-|.-.|-.||-=.++.++|+.
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~ 76 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALK 76 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHh
Confidence 444556799999999999999999999974333322223455556666666666666654
No 291
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=37.11 E-value=3.2e+02 Score=24.78 Aligned_cols=71 Identities=18% Similarity=0.077 Sum_probs=59.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023865 173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ 244 (276)
Q Consensus 173 eaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ 244 (276)
+.+++---+|+-..|+.-|+++++.....++..-++...=..-|.-.|+.++|.+=+..-. +-..+-.|.|
T Consensus 82 NRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA-~LGS~FAr~Q 152 (175)
T KOG4555|consen 82 NRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAA-QLGSKFAREQ 152 (175)
T ss_pred cHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHH-HhCCHHHHHH
Confidence 3455555689999999999999999999999989999999999999999999999888776 5555555544
No 292
>PRK10780 periplasmic chaperone; Provisional
Probab=36.96 E-value=2.7e+02 Score=23.79 Aligned_cols=29 Identities=31% Similarity=0.569 Sum_probs=17.0
Q ss_pred cHHHHHHHHHHHHHHH-HHHHHHHHHHhhh
Q 023865 100 DWEKEMRRRVKEIEEM-RELEKKAEELQSK 128 (276)
Q Consensus 100 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 128 (276)
..|++...+-++++.+ .++.++.+++|..
T Consensus 47 ~le~~~~~~q~el~~~~~elq~~~~~~q~~ 76 (165)
T PRK10780 47 QLENEFKGRASELQRMETDLQAKMQKLQRD 76 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555555555554 4566666777665
No 293
>PRK11906 transcriptional regulator; Provisional
Probab=36.78 E-value=96 Score=31.86 Aligned_cols=68 Identities=18% Similarity=0.143 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
|...|-.|...+=.|+...|+++++.++...|..-.. +=+++|+-|=| ....++||+||-+=+....+
T Consensus 372 A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 439 (458)
T PRK11906 372 ASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA-VVIKECVDMYV--PNPLKNNIKLYYKETESESH 439 (458)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH-HHHHHHHHHHc--CCchhhhHHHHhhccccccc
Confidence 5677888888889999999999999999977766553 33555554433 46789999999776633333
No 294
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=36.50 E-value=45 Score=37.97 Aligned_cols=65 Identities=20% Similarity=0.077 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC----CCCCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP----RPTFFGGEIQIWLAMAYEANNRHADCIALYKQ 231 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~----~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~ 231 (276)
..++..++.|+.++.+|.++.|.+ +-..+.... .-.+.-++....|++-|...|+.++||++|++
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~k 998 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRK 998 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhccc
Confidence 346778999999999999998888 333333222 12233457899999999999999999999975
No 295
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=36.02 E-value=3.2e+02 Score=29.74 Aligned_cols=115 Identities=16% Similarity=0.121 Sum_probs=80.0
Q ss_pred HHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 023865 117 ELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (276)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~ 196 (276)
-||+-+-.+++-++.++.-... |.++. +-+ ....-..|..++.-...|+|..|..++..|+.
T Consensus 338 ~le~Lvt~y~~~L~~~~~f~~~-D~~~~-----------E~P------ttllWt~y~laqh~D~~g~~~~A~~yId~AId 399 (700)
T KOG1156|consen 338 FLEKLVTSYQHSLSGTGMFNFL-DDGKQ-----------EPP------TTLLWTLYFLAQHYDKLGDYEVALEYIDLAID 399 (700)
T ss_pred HHHHHHHHHHhhcccccCCCcc-ccccc-----------CCc------hHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 4666777888888777532111 11110 011 23355789999999999999999999999999
Q ss_pred hCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcC
Q 023865 197 IIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQA 254 (276)
Q Consensus 197 ~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILEA 254 (276)
+||--.+..|..|+-|.-+|..+.|-++...-. .--.+...-+.+-.-|-|-|
T Consensus 400 ----HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~-elD~aDR~INsKcAKYmLrA 452 (700)
T KOG1156|consen 400 ----HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQ-ELDTADRAINSKCAKYMLRA 452 (700)
T ss_pred ----cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHH-hccchhHHHHHHHHHHHHHc
Confidence 778778889999999999999999999987765 44344444443444444433
No 296
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=35.75 E-value=2.9e+02 Score=25.76 Aligned_cols=84 Identities=14% Similarity=0.077 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhcCCH--HHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHH-----------cCChHHHHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMY--GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA-----------NNRHADCIALYKQLES 234 (276)
Q Consensus 168 ae~~yeaG~aALerGdY--~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa-----------~Gq~EkAIALCQ~L~~ 234 (276)
|+..++.++.++..|.= ..-..-++.+.+....+.. ..+.++.+.+|.- .++.+.|+++|++-..
T Consensus 129 aeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~--vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~ 206 (230)
T PHA02537 129 AEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDE--VRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQ 206 (230)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHH
Confidence 67788888888888871 0112233443333333333 4677777777643 4677899999999998
Q ss_pred hCCCHHHHHHHHHHHHhhc
Q 023865 235 NHPSKNIRRQAADLRYILQ 253 (276)
Q Consensus 235 ~HPd~qVRqQAKqLLyILE 253 (276)
-||+..|++.=+++-.-|.
T Consensus 207 l~~k~GVK~~i~~l~~~lr 225 (230)
T PHA02537 207 LNDKCGVKKDIERLERRLK 225 (230)
T ss_pred hCCCCChHHHHHHHHHHHh
Confidence 9999999987777655554
No 297
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=35.70 E-value=1.1e+02 Score=30.54 Aligned_cols=61 Identities=20% Similarity=0.049 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCC-CchHHHHHHHHHHHHH--cCChHHHHHHHHH
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPT-FFGGEIQIWLAMAYEA--NNRHADCIALYKQ 231 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS-~lGGEAQmwLAtAYqa--~Gq~EkAIALCQ~ 231 (276)
....+..+|.+++|+.|.++|+.++....+.. .-.-+....|+.+|.. .-++++|......
T Consensus 133 e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 133 EQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34456789999999999999999997543222 1124666788888886 6778888877663
No 298
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=35.63 E-value=1.6e+02 Score=27.38 Aligned_cols=65 Identities=18% Similarity=0.168 Sum_probs=47.0
Q ss_pred HHHHHHHHHhhhCCCCCCchHH----HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhc
Q 023865 186 RAIEFLEGALTIIPRPTFFGGE----IQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQ 253 (276)
Q Consensus 186 qAIelLE~Al~~~~~nS~lGGE----AQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILE 253 (276)
.|+-.|+.+....+....+-.+ ++...|..++.+|..++|+.+.+.+. ..|+..-. =..|+.|..
T Consensus 87 SAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~-~d~~~~~~--r~kL~~II~ 155 (200)
T cd00280 87 SALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLF-SDPESQKL--RMKLLMIIR 155 (200)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHh-cCCCchhH--HHHHHHHHH
Confidence 4677777777777765445454 44567889999999999999999998 55555444 456777764
No 299
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=35.52 E-value=1.2e+02 Score=20.39 Aligned_cols=16 Identities=44% Similarity=0.721 Sum_probs=7.5
Q ss_pred HHHHHhcCCHHHHHHH
Q 023865 175 GQKAYGKGMYGRAIEF 190 (276)
Q Consensus 175 G~aALerGdY~qAIel 190 (276)
|-..+.+|+|.+|+.+
T Consensus 8 a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 8 AYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHTT-HHHHHHH
T ss_pred HHHHHHHhhHHHHHHH
Confidence 4444455555555555
No 300
>PRK09687 putative lyase; Provisional
Probab=34.91 E-value=2.4e+02 Score=26.26 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 023865 185 GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN-RHADCIALYKQLESNHPSKNIRRQAADLRY 250 (276)
Q Consensus 185 ~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~G-q~EkAIALCQ~L~~~HPd~qVRqQAKqLLy 250 (276)
..||..|-.++.. .++ .++.|-+.|+-..+ ....++..--.+. .++++.||.-|-..|.
T Consensus 158 ~~ai~~L~~~L~d--~~~----~VR~~A~~aLg~~~~~~~~~~~~L~~~L-~D~~~~VR~~A~~aLg 217 (280)
T PRK09687 158 EAAIPLLINLLKD--PNG----DVRNWAAFALNSNKYDNPDIREAFVAML-QDKNEEIRIEAIIGLA 217 (280)
T ss_pred HHHHHHHHHHhcC--CCH----HHHHHHHHHHhcCCCCCHHHHHHHHHHh-cCCChHHHHHHHHHHH
Confidence 5555555555541 111 35555555555443 2344444444444 4666666666665554
No 301
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=34.80 E-value=3e+02 Score=23.82 Aligned_cols=63 Identities=11% Similarity=-0.000 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHH--HHHHHHHHHcCChHHHHHHHHH
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQ--IWLAMAYEANNRHADCIALYKQ 231 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQ--mwLAtAYqa~Gq~EkAIALCQ~ 231 (276)
+......+.|.-.++-|++..|++.+..+...+ +..|-.+. +-++...--.|+.....+...+
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~---~~~~~~id~~l~~irv~i~~~d~~~v~~~i~k 98 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYC---TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEK 98 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 344556677777788888888888888765532 22233344 4444555555666655555433
No 302
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=34.79 E-value=1.5e+02 Score=32.55 Aligned_cols=54 Identities=15% Similarity=0.152 Sum_probs=34.9
Q ss_pred HHHHHhcCCHHHHHH--HHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 023865 175 GQKAYGKGMYGRAIE--FLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQL 232 (276)
Q Consensus 175 G~aALerGdY~qAIe--lLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L 232 (276)
|+.-++.|+=+-|.. +|-.++...|.+- +++++|....++.|+.+.|-..|+.-
T Consensus 725 a~~lle~G~~~la~~~~~L~dalr~dp~n~----eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 725 AELLLELGSPRLAEKRSLLSDALRLDPLNH----EAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHccchHHHHHHHHHH
Confidence 444455555554444 5555555444433 58999999999999998887776643
No 303
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=34.55 E-value=48 Score=25.15 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=20.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhhc
Q 023865 229 YKQLESNHPSKNIRRQAADLRYILQ 253 (276)
Q Consensus 229 CQ~L~~~HPd~qVRqQAKqLLyILE 253 (276)
-..|. +|++++|+..|+.|+.-+.
T Consensus 49 V~~Lr-kh~~~~i~~~A~~Lv~~Wk 72 (76)
T cd00183 49 VNSLR-KHSNEKIRKLAKALIKSWK 72 (76)
T ss_pred HHHHH-cCCcHHHHHHHHHHHHHHH
Confidence 46787 8999999999999987664
No 304
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.54 E-value=2.7e+02 Score=29.73 Aligned_cols=85 Identities=14% Similarity=0.195 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC--CCCCchHHHHHHHHHHHHHcCChHHHHHHHH---HHHHhCCCHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEANNRHADCIALYK---QLESNHPSKNIR 242 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~--~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ---~L~~~HPd~qVR 242 (276)
+...|--|.-||.+++|.+|-.+|-..+++.. ..-++-+.-..+|.-.....|++.++...-+ +|.++-||--|+
T Consensus 445 a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vq 524 (629)
T KOG2300|consen 445 ASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQ 524 (629)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHH
Confidence 45578889999999999999999999997664 3355667777888888999999998877654 577788899999
Q ss_pred HHHHHHHHhh
Q 023865 243 RQAADLRYIL 252 (276)
Q Consensus 243 qQAKqLLyIL 252 (276)
=|.-.++.-|
T Consensus 525 Lws~si~~~L 534 (629)
T KOG2300|consen 525 LWSSSILTDL 534 (629)
T ss_pred HHHHHHHHHH
Confidence 8887775433
No 305
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=34.48 E-value=93 Score=23.33 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~ 196 (276)
..|...+..|..+=..|+|.+|+.++..++.
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456667777777788888888888888776
No 306
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=34.34 E-value=1.9e+02 Score=32.47 Aligned_cols=12 Identities=42% Similarity=0.758 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 023865 110 KEIEEMRELEKK 121 (276)
Q Consensus 110 ~~~~~~~~~~~~ 121 (276)
.+|+|.-|.|++
T Consensus 927 rk~qE~~E~ER~ 938 (1259)
T KOG0163|consen 927 RKIQELAEAERK 938 (1259)
T ss_pred HHHHHHHHHHHH
Confidence 333443344433
No 307
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=34.33 E-value=2.7e+02 Score=23.46 Aligned_cols=62 Identities=16% Similarity=0.083 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHH
Q 023865 152 RELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYE 217 (276)
Q Consensus 152 ~~L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYq 217 (276)
.+++..+.+.-..--.|+..+-.++.+.++|+|..|-++|+.+-+.. ..+-++|.-|.+...
T Consensus 15 e~~e~~~~~II~~aG~ArS~~~eAl~~Ak~gdfe~A~~~l~eA~e~l----~~AH~~qt~Liq~Ea 76 (115)
T PRK10454 15 EELEEVVMGLIINSGQARSLAYAALKQAKQGDFAAAKAMMDQSRMAL----NEAHLVQTKLIEGDQ 76 (115)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 44666776655555678999999999999999999999999977632 333446666664433
No 308
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=34.14 E-value=38 Score=24.59 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=26.5
Q ss_pred CCCchHHHHHHHHHHHHH-cCChHHHHHHHHHHH
Q 023865 201 PTFFGGEIQIWLAMAYEA-NNRHADCIALYKQLE 233 (276)
Q Consensus 201 nS~lGGEAQmwLAtAYqa-~Gq~EkAIALCQ~L~ 233 (276)
++-.|.++--||..-..+ ....++|+.+||.|.
T Consensus 16 ~~F~G~e~v~WL~~~~~~~~~~r~eA~~l~q~Ll 49 (74)
T PF00610_consen 16 NCFTGSEAVDWLMDNFEGFVRDREEAVQLGQELL 49 (74)
T ss_dssp CEEEHHHHHHHHHHTSCTSTSSHHHHHHHHHHHH
T ss_pred CEeEhHHHHHHHHHhccccccCHHHHHHHHHHHH
Confidence 445688888899854444 789999999999998
No 309
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=34.01 E-value=1.6e+02 Score=27.19 Aligned_cols=26 Identities=38% Similarity=0.768 Sum_probs=15.6
Q ss_pred cHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 023865 100 DWEKE-MRRRVKEIEEMRELEKKAEELQSKAEE 131 (276)
Q Consensus 100 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (276)
|||.- ++|. +.+|+.+....+.....
T Consensus 95 dwEevrLkrE------La~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 95 DWEEVRLKRE------LAELEEKLSKVEQAAES 121 (195)
T ss_pred chHHHHHHHH------HHHHHHHHHHHHHHHHh
Confidence 89987 4544 44555566655555544
No 310
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.78 E-value=3.6e+02 Score=26.52 Aligned_cols=52 Identities=13% Similarity=0.056 Sum_probs=43.9
Q ss_pred hcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023865 180 GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (276)
Q Consensus 180 erGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~ 235 (276)
..+.|..|.=+|+..+...+++.. .++.+|-+....|+.++|-.+-+...++
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~----llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPL----LLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChH----HHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 455799999999998887777666 8999999999999999999999876644
No 311
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=33.75 E-value=1.8e+02 Score=30.64 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
-..-++.++-.|-+|+|..|+-+-.=.....| |+ ++.=+|-++...+-+.++|-...+.|-
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP--S~---~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP--SP---QAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC--cH---HHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 34578889999999999999977666555444 44 477777777777777777777666664
No 312
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=33.70 E-value=2.6e+02 Score=24.85 Aligned_cols=86 Identities=16% Similarity=0.183 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hCCCC-----------------------------CCchHHHHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALT-IIPRP-----------------------------TFFGGEIQIWLAMAYE 217 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~-~~~~n-----------------------------S~lGGEAQmwLAtAYq 217 (276)
....++.++-...+|+-..||..|...+. ..... ...-+++.+.++.-..
T Consensus 184 ~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~ 263 (352)
T PF02259_consen 184 PRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLD 263 (352)
T ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHH
Confidence 45667778888899999999999999887 22221 1223356666666666
Q ss_pred Hc------CChHHHHHHHHHHHHhCCCHH--HHHHHHHHHHhhc
Q 023865 218 AN------NRHADCIALYKQLESNHPSKN--IRRQAADLRYILQ 253 (276)
Q Consensus 218 a~------Gq~EkAIALCQ~L~~~HPd~q--VRqQAKqLLyILE 253 (276)
.. +..++++..|+..++-+|... ...||.-.-..++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~ 307 (352)
T PF02259_consen 264 ELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLE 307 (352)
T ss_pred hhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH
Confidence 66 999999999999996665432 2334544444443
No 313
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=33.68 E-value=3.2e+02 Score=23.70 Aligned_cols=71 Identities=14% Similarity=0.171 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCC--CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT--FFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS--~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
....+..-..++..|+|..+..+++++-....... ..-.+...+-+.++.++|+...|-.++-....+|..
T Consensus 73 id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~~ 145 (177)
T PF10602_consen 73 IDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFTS 145 (177)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCCC
Confidence 34556777889999999999999999887666533 223356778888899999999998887766645543
No 314
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=33.58 E-value=2.2e+02 Score=24.26 Aligned_cols=66 Identities=15% Similarity=0.077 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHH--HHcCChHHHHHHHHH
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAY--EANNRHADCIALYKQ 231 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAY--qa~Gq~EkAIALCQ~ 231 (276)
..+...++.-...+.+++|..|-.++..+-....+...+.-++.+-...++ ...|+.+.++..|++
T Consensus 126 ~i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g~~~~~~~~i~~ 193 (220)
T TIGR01716 126 RVIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEGQKESGEEKIEQ 193 (220)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 346677888889999999999999998865544334455556665555554 356764443333333
No 315
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=32.88 E-value=1e+02 Score=17.69 Aligned_cols=16 Identities=31% Similarity=0.214 Sum_probs=7.1
Q ss_pred CHHHHHHHHHHHhhhC
Q 023865 183 MYGRAIEFLEGALTII 198 (276)
Q Consensus 183 dY~qAIelLE~Al~~~ 198 (276)
++..|-..++.++...
T Consensus 2 ~~~~~r~i~e~~l~~~ 17 (33)
T smart00386 2 DIERARKIYERALEKF 17 (33)
T ss_pred cHHHHHHHHHHHHHHC
Confidence 3444444444444433
No 316
>KOG2607 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=32.80 E-value=1.6e+02 Score=30.56 Aligned_cols=133 Identities=15% Similarity=0.248 Sum_probs=77.0
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 023865 105 MRRRVKEI-EEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGM 183 (276)
Q Consensus 105 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~~a~~~a~~~e~ae~~yeaG~aALerGd 183 (276)
+||.+... +.|.|+-+|+.+++..++.--..-++.=..=--|=.-||.+|-+.|.- ...+.|+.+..+...
T Consensus 127 LkKQiaK~qQq~tE~~RKe~d~~k~aa~~r~qfe~~c~qlglkG~nvr~ElLelasd------LPs~fyei~~v~i~~-- 198 (505)
T KOG2607|consen 127 LKKQIAKVQQQMTELDRKEADIKKSAALSRTQFEDACRQLGLKGNNVRRELLELASD------LPSTFYEILEVIISD-- 198 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHhCCccchHHHHHHHHHhc------CcHHHHHHHHHHHhh--
Confidence 45665544 568899999998887665433210000000001123567777776662 233456666655554
Q ss_pred HHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCCCCCCccc
Q 023865 184 YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAPKLKISQEE 263 (276)
Q Consensus 184 Y~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILEAPkLkrp~eW 263 (276)
...||.++-.++..+...-. .....-+-+.+.|.++-||..|-+| .+-+++-..++|+..
T Consensus 199 i~~aiDyYqa~v~~v~~g~~----------------k~~~qVLpiL~~i~Erg~n~Tvyew----~~g~~pd~VE~p~~e 258 (505)
T KOG2607|consen 199 ITGAIDYYQAYVQDVHTGKD----------------KPLRQVLPILKYIRERGPNLTVYEW----SEGLDPDNVESPENE 258 (505)
T ss_pred hhHHHHHHHHHHHHHhccCC----------------ccHHHHhHHHHHHHhcCCCcceeec----cccCCcccccCCchh
Confidence 77788888777653321111 0112334455666756669999888 567778888888877
Q ss_pred cc
Q 023865 264 MV 265 (276)
Q Consensus 264 ~v 265 (276)
+.
T Consensus 259 ~l 260 (505)
T KOG2607|consen 259 NL 260 (505)
T ss_pred hh
Confidence 75
No 317
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=32.75 E-value=2.5e+02 Score=26.43 Aligned_cols=64 Identities=16% Similarity=0.077 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 023865 184 YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (276)
Q Consensus 184 Y~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyIL 252 (276)
...-|.+||+|++..| .+. +..+.+..++....+.++.....+.+..+||+ ...=|-+.|-+..
T Consensus 47 ~E~klsilerAL~~np-~~~---~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q 110 (321)
T PF08424_consen 47 AERKLSILERALKHNP-DSE---RLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQ 110 (321)
T ss_pred HHHHHHHHHHHHHhCC-CCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHH
Confidence 4456788999998744 333 57888888888999999999999999977776 5556666665543
No 318
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=32.09 E-value=1e+02 Score=21.71 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=23.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALT 196 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~ 196 (276)
.|.-+.+-++-|+|..|.++|+.++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 36778889999999999999999995
No 319
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=32.08 E-value=1.3e+02 Score=21.59 Aligned_cols=39 Identities=38% Similarity=0.442 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHH
Q 023865 114 EMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEK 156 (276)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~ 156 (276)
..|++|-|.-+|+.++++.+-. +++=+++=...|++|.+
T Consensus 5 rkR~IElk~~elrd~LEe~g~~----~eeIe~kv~~~R~~L~~ 43 (46)
T PF08312_consen 5 RKREIELKCLELRDELEEQGYS----EEEIEEKVDELRKKLLE 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHT------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHHHh
Confidence 3477888888899988887742 33334444555555543
No 320
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=31.68 E-value=64 Score=26.19 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=19.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 209 QIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 209 QmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
..-|+.=|.+.|.+.+|+.+-++|.
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~ 66 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLA 66 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHh
Confidence 3457777888888888888888887
No 321
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=31.65 E-value=2e+02 Score=24.60 Aligned_cols=45 Identities=20% Similarity=0.309 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHcC------C----hHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 023865 207 EIQIWLAMAYEANN------R----HADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (276)
Q Consensus 207 EAQmwLAtAYqa~G------q----~EkAIALCQ~L~~~HPd~qVRqQAKqLLyIL 252 (276)
.+-.||..+....| + .+..+.....+. ..|+++||+.|++++-.|
T Consensus 150 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l-~D~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 150 ECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLL-SDADPEVREAARECLWAL 204 (228)
T ss_dssp HHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHH-TSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHH
Confidence 45567777777777 1 144566666666 699999999999998776
No 322
>PF13206 VSG_B: Trypanosomal VSG domain
Probab=31.46 E-value=1.2e+02 Score=27.68 Aligned_cols=33 Identities=21% Similarity=0.448 Sum_probs=30.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023865 98 EYDWEKEMRRRVKEIEEMRELEKKAEELQSKAE 130 (276)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (276)
.+.|.+.++.=++++++|+....+++.++.++.
T Consensus 317 ~IpW~~~l~~a~~~L~~~~~~~~~~~~~~~~l~ 349 (351)
T PF13206_consen 317 KIPWLKKLEEAADKLEEAEKAAAEAQALATQLE 349 (351)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999988875
No 323
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=31.16 E-value=1.2e+02 Score=25.73 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCChHHHHH-HHHHHHHhCCCHHHHHHHHHHHHhhc
Q 023865 209 QIWLAMAYEANNRHADCIA-LYKQLESNHPSKNIRRQAADLRYILQ 253 (276)
Q Consensus 209 QmwLAtAYqa~Gq~EkAIA-LCQ~L~~~HPd~qVRqQAKqLLyILE 253 (276)
++.|.-.+.+.|+.++|.. +|+.|. -||.|. +||.|++
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~-V~~qP~------~LL~i~q 104 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALK-VCPQPA------ELLQIYQ 104 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH-TSSSHH------HHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCHH------HHHHHHH
Confidence 3445555567788888765 888887 899886 6777775
No 324
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=31.01 E-value=1.6e+02 Score=29.32 Aligned_cols=28 Identities=39% Similarity=0.534 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023865 103 KEMRRRVKEIEEMRELEKKAEELQSKAE 130 (276)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (276)
.++++|--|-++.+|||..||+-..+.+
T Consensus 321 ~e~kkrqlerqekqeleqmaeeekkr~e 348 (445)
T KOG2891|consen 321 AEIKKRQLERQEKQELEQMAEEEKKREE 348 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777555443
No 325
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=30.90 E-value=2.9e+02 Score=26.77 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchH
Q 023865 164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGG 206 (276)
Q Consensus 164 ~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGG 206 (276)
.+.-+...|.-.+..-+||.|++|.++..-.+.+.|.+.+.|.
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ 141 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGV 141 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchh
Confidence 3445667778888899999999999999999998888888876
No 326
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=30.62 E-value=1.3e+02 Score=30.74 Aligned_cols=47 Identities=26% Similarity=0.223 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCC---HHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGM---YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA 218 (276)
Q Consensus 168 ae~~yeaG~aALerGd---Y~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa 218 (276)
|=..|-.|...+.+++ +..|+++|++|++..|.+.. ++-+|+.+|..
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~----a~A~la~~~~~ 388 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTY----AQAEKALADIV 388 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHH
Confidence 4445666677776665 89999999999998887755 56666666644
No 327
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=30.60 E-value=1.2e+02 Score=33.15 Aligned_cols=56 Identities=13% Similarity=0.280 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023865 185 GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ 244 (276)
Q Consensus 185 ~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ 244 (276)
..+|+.||.|++..+.+.. +-++|++=|.-.++.+.|...|+...+-.|..++.-|
T Consensus 461 ~kslqale~av~~d~~dp~----~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~w 516 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDPL----VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAW 516 (799)
T ss_pred HHHHHHHHHHHhcCCCCch----HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHH
Confidence 3456666666654444442 6666666666666666666666665533344444433
No 328
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=30.46 E-value=1.2e+02 Score=20.25 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHH--HHHHH
Q 023865 207 EIQIWLAMAYEANNRHADCIAL--YKQLE 233 (276)
Q Consensus 207 EAQmwLAtAYqa~Gq~EkAIAL--CQ~L~ 233 (276)
+..+.++-.+..+|+.++|+.+ |+-|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~ 30 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLC 30 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3567889999999999999999 44665
No 329
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=30.20 E-value=1.6e+02 Score=31.86 Aligned_cols=22 Identities=45% Similarity=0.484 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHhhhhhccC
Q 023865 112 IEEMRELEKKAEELQSKAEEDD 133 (276)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~ 133 (276)
-.|+.|||.|-.+|+|.+++-.
T Consensus 92 s~EL~ele~krqel~seI~~~n 113 (907)
T KOG2264|consen 92 SLELTELEVKRQELNSEIEEIN 113 (907)
T ss_pred HHHHHHHHHHHHHHHhHHHHHH
Confidence 3688999999999999886543
No 330
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=29.80 E-value=6.9e+02 Score=26.42 Aligned_cols=75 Identities=17% Similarity=0.184 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRY 250 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLy 250 (276)
....+.--.-.|.|..+|.+||.++...+-.+ .-.-|+....+++..++|+.-|+.-....|+.+-...-=+.|.
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-----LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lE 515 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN-----LHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLE 515 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHhhccccH-----HHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 34445556778999999999999998655433 4556777788999999999999887757787765544444443
No 331
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=29.66 E-value=1.9e+02 Score=26.46 Aligned_cols=57 Identities=14% Similarity=0.077 Sum_probs=23.6
Q ss_pred cCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 181 KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 181 rGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
.|+...|-.+||.++...+.... -..+.--.+.-=...|+.+....+++...+.+|+
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~-~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQ-SKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHH-CHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred hCcHHHHHHHHHHHHHhcCchhH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 44555555555555543322220 0112222222233445555555555555544444
No 332
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=29.25 E-value=78 Score=28.85 Aligned_cols=28 Identities=39% Similarity=0.595 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALT 196 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~ 196 (276)
....+.|...|+.++|.+|+.|++-++.
T Consensus 247 ~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 247 TLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 4567889999999999999999997764
No 333
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=28.92 E-value=1.1e+02 Score=22.18 Aligned_cols=20 Identities=20% Similarity=0.390 Sum_probs=10.6
Q ss_pred HHHHHHHcCChHHHHHHHHH
Q 023865 212 LAMAYEANNRHADCIALYKQ 231 (276)
Q Consensus 212 LAtAYqa~Gq~EkAIALCQ~ 231 (276)
.|.-++..|+.++|+.+|+.
T Consensus 11 ~Av~~D~~g~~~~A~~~Y~~ 30 (69)
T PF04212_consen 11 KAVEADEAGNYEEALELYKE 30 (69)
T ss_dssp HHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33445555566666555543
No 334
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=28.40 E-value=6.6e+02 Score=25.73 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCc
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF 204 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~l 204 (276)
+.....|+-++.-|+.|+|+-|-.+|--+...++...+.
T Consensus 127 e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n 165 (432)
T KOG2758|consen 127 ERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRN 165 (432)
T ss_pred HHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchh
Confidence 445669999999999999999999999988888877663
No 335
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=27.94 E-value=2.9e+02 Score=21.39 Aligned_cols=83 Identities=19% Similarity=0.216 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 023865 113 EEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLE 192 (276)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE 192 (276)
++++.|...++.|-+.+.+.. .+.-..+|.++.+.+.....+...+. .. -+..+.+++...+
T Consensus 5 ~~l~~l~~d~~~l~~~~~~~~----------~~~~~~~r~~~~~~~~~a~~~~~~~~---~~-----~~~~~~~~~~~~~ 66 (94)
T PF05957_consen 5 AELEQLRADLEDLARSAADLA----------GEKADEARDRAEEALDDARDRAEDAA---DQ-----AREQAREAAEQTE 66 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHHHHHHHHHHHH---HH-----HHHHHHHHHHHHH
Confidence 456667777777766665554 22334444555444443333333221 11 1234578888889
Q ss_pred HHhhhCCCCCCchHHHHHHHHH
Q 023865 193 GALTIIPRPTFFGGEIQIWLAM 214 (276)
Q Consensus 193 ~Al~~~~~nS~lGGEAQmwLAt 214 (276)
.++...|..+ +|.-+-+.++.
T Consensus 67 ~~V~e~P~~s-vgiAagvG~ll 87 (94)
T PF05957_consen 67 DYVRENPWQS-VGIAAGVGFLL 87 (94)
T ss_pred HHHHHChHHH-HHHHHHHHHHH
Confidence 9888666544 33434344433
No 336
>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria. Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.
Probab=27.77 E-value=49 Score=24.45 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGA 194 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~A 194 (276)
+.+.....=..|+.+|||.+|..+|.+-
T Consensus 8 ~P~~~v~~f~~al~~gd~~~a~~~~~~~ 35 (111)
T PF12870_consen 8 TPEEVVKNFFDALKNGDYEKAYAYLSPE 35 (111)
T ss_dssp -HHHHHHHHHHHHCTT-HHHHHHTB--T
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHhhCcc
Confidence 3445566677899999999999998763
No 337
>PF05942 PaREP1: Archaeal PaREP1/PaREP8 family; InterPro: IPR010268 This family consists of several archaeal PaREP1 proteins, the function of the family is unknown.; PDB: 2Q00_A 2JPU_A.
Probab=27.69 E-value=1e+02 Score=24.84 Aligned_cols=33 Identities=24% Similarity=0.132 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 023865 164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (276)
Q Consensus 164 ~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~ 196 (276)
|++.+...++.|..-+++|++.+|-+.+=+|+.
T Consensus 2 rl~~a~~~l~~A~e~L~~G~~rqAaeK~~~A~~ 34 (115)
T PF05942_consen 2 RLEEAEKELEEADELLEKGDLRQAAEKAFKAVE 34 (115)
T ss_dssp --BHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566788889999999999999998877666654
No 338
>KOG2475 consensus CDC45 (cell division cycle 45)-like protein [Replication, recombination and repair]
Probab=27.37 E-value=2.4e+02 Score=30.01 Aligned_cols=66 Identities=24% Similarity=0.331 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH---HHHHHHHHHHhhhCCCCCCchHHHHHHHHH
Q 023865 144 EEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMY---GRAIEFLEGALTIIPRPTFFGGEIQIWLAM 214 (276)
Q Consensus 144 ~~~~~rv~~~L~~~a~~~a~~~e~ae~~yeaG~aALerGdY---~qAIelLE~Al~~~~~nS~lGGEAQmwLAt 214 (276)
.+++.|.-.+.-+++..+++++..-+..=..=-.-|+.|-| +-|+.+||-|..+...+ . =.+|+|.
T Consensus 168 ~~~~~R~e~~~~~r~~krr~rr~~e~e~~~Il~eYy~~gt~~g~ss~~~lfela~ml~k~~-n----d~LWlai 236 (587)
T KOG2475|consen 168 SESRQRLEEEIDQRASKRRERRKWEKERRTILFEYYESGTWHGSSSAVTLFELASMLGKDN-N----DLLWLAI 236 (587)
T ss_pred hHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcceeecCchHHHHHHHHHHhccch-H----HHHHHHH
Confidence 44555555554344444444443322222222334566665 46788898877644333 3 4678774
No 339
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=27.01 E-value=1.6e+02 Score=23.78 Aligned_cols=48 Identities=23% Similarity=0.052 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHH
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYE 217 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYq 217 (276)
-.|+..+-.++.+.+.|+|..|-++|+.+-+.. ..+-++|.-|.+.-.
T Consensus 13 G~Ars~~~eAl~~a~~g~fe~A~~~l~ea~~~l----~~AH~~qt~liq~ea 60 (97)
T cd00215 13 GNARSKALEALKAAKEGDFAEAEELLEEANDSL----NEAHHAQTKLLQQEA 60 (97)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 457889999999999999999999999976632 223345655555444
No 340
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=26.95 E-value=2.5e+02 Score=29.69 Aligned_cols=58 Identities=24% Similarity=0.129 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHH
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYK 230 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ 230 (276)
.+..|.-|-+.|..++||+.+...+...|..+.+| ++..|+-+|--.++..++-++-.
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~--IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLN--IRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhh--HHHHHHHHHHhcCCHHHHHHHHH
Confidence 34567888899999999999999998888766664 88889999988888888766543
No 341
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=26.94 E-value=1.1e+02 Score=24.06 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHH-------HHHhCCCHHHHH
Q 023865 210 IWLAMAYEANNRHADCIALYKQ-------LESNHPSKNIRR 243 (276)
Q Consensus 210 mwLAtAYqa~Gq~EkAIALCQ~-------L~~~HPd~qVRq 243 (276)
+..|.-++..|+.++||.+|+. +.+..||...+.
T Consensus 10 a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~ 50 (75)
T cd02682 10 AINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRL 50 (75)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 3445567778888877777764 444667766543
No 342
>PF13080 DUF3926: Protein of unknown function (DUF3926)
Probab=26.65 E-value=45 Score=24.23 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=14.3
Q ss_pred hCCCHHHHHHHHHHHHhhc
Q 023865 235 NHPSKNIRRQAADLRYILQ 253 (276)
Q Consensus 235 ~HPd~qVRqQAKqLLyILE 253 (276)
.-|.| ++++||++|.||+
T Consensus 6 ELP~P-iqQsAkqmlnILQ 23 (44)
T PF13080_consen 6 ELPTP-IQQSAKQMLNILQ 23 (44)
T ss_pred hcCch-HHHHHHHHHHHHH
Confidence 34544 8999999999996
No 343
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=26.59 E-value=3.3e+02 Score=26.06 Aligned_cols=26 Identities=31% Similarity=0.197 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023865 140 EETEEEKRMRVRRELEKVAKEQAERR 165 (276)
Q Consensus 140 ~~~~~~~~~rv~~~L~~~a~~~a~~~ 165 (276)
=|.+-|||+++-|+|+++-++....+
T Consensus 79 Lea~VEkrD~~IQqLqk~LK~aE~iL 104 (272)
T KOG4552|consen 79 LEAHVEKRDEVIQQLQKNLKSAEVIL 104 (272)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34456789999999999888544333
No 344
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.56 E-value=3.8e+02 Score=30.16 Aligned_cols=15 Identities=0% Similarity=0.235 Sum_probs=7.5
Q ss_pred EEeeccccccccccc
Q 023865 65 VVTRGKVNSKVNAVD 79 (276)
Q Consensus 65 ~~~~~~~~~~~~~~~ 79 (276)
.+-++++-+..||+-
T Consensus 279 ~~r~~rs~~sis~~~ 293 (1118)
T KOG1029|consen 279 SFRSSRSANSISGLE 293 (1118)
T ss_pred ccccccCCCCccccc
Confidence 344555555555543
No 345
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.51 E-value=1.5e+02 Score=29.83 Aligned_cols=61 Identities=13% Similarity=0.010 Sum_probs=52.7
Q ss_pred HHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 177 KAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 177 aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
.++..-.-..|+.-|++++++-+....-|-.|.-.++..|-+.|+.++...-|++|. ++-.
T Consensus 36 K~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL-TYIk 96 (440)
T KOG1464|consen 36 KGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL-TYIK 96 (440)
T ss_pred ccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH-HHHH
Confidence 345566788899999999998888889999999999999999999999999999987 5533
No 346
>PF06518 DUF1104: Protein of unknown function (DUF1104); InterPro: IPR009488 This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.; PDB: 2XRH_A.
Probab=26.37 E-value=3e+02 Score=22.42 Aligned_cols=63 Identities=25% Similarity=0.424 Sum_probs=34.7
Q ss_pred CCCCCcccccHHHHHHHHHHHHH--HHHHHHHHHHH-HhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHH
Q 023865 91 NGNGEKEEYDWEKEMRRRVKEIE--EMRELEKKAEE-LQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAK 159 (276)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~~a~ 159 (276)
|--.|.+..|+..||++|++..- +.++.-+...+ .+..++.=. -+.-.+++.-||..|+++..
T Consensus 16 G~v~~k~~~dy~~Ei~KR~~~m~~~~~k~f~~~~~~~~~kn~~~ms------~~e~~k~~~ev~k~~~~~~~ 81 (93)
T PF06518_consen 16 GKVDPKDVPDYKMEIHKRLKKMKEKEAKDFKKQFKEAARKNLSKMS------VEERKKRREEVRKALEKRIK 81 (93)
T ss_dssp TTS-GGGHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHTTS-------HHHHHHHHHHHHHHHHHT--
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHHHHHHHHH
Confidence 55567788999999999998543 34444433333 344443333 22234555666766666543
No 347
>PF03713 DUF305: Domain of unknown function (DUF305); InterPro: IPR005183 A domain that is found in small family of bacterial secreted proteins with no known function. It ia also found in Paramecium bursaria Chlorella virus 1 (PBCV-1). This domain is short and found in one or two copies. The domain has a conserved HH motif that may be functionally important.; PDB: 2QF9_B 3BT5_A.
Probab=26.31 E-value=89 Score=25.84 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 023865 222 HADCIALYKQLESNHPSKNIRRQAADLR 249 (276)
Q Consensus 222 ~EkAIALCQ~L~~~HPd~qVRqQAKqLL 249 (276)
++.||.+++.+.++-.||+||.+|.++.
T Consensus 12 H~~Ai~ma~~~~~~~~~p~vr~lA~~I~ 39 (151)
T PF03713_consen 12 HQQAIEMAELALKRGTDPEVRALAQQII 39 (151)
T ss_dssp HHHHHHHHHHHHCC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 5678888888875556888888888763
No 348
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=26.17 E-value=4.1e+02 Score=30.04 Aligned_cols=7 Identities=29% Similarity=0.714 Sum_probs=3.1
Q ss_pred cccCCCC
Q 023865 265 VTIPLIG 271 (276)
Q Consensus 265 v~IPdL~ 271 (276)
..||-+.
T Consensus 1152 Fri~F~~ 1158 (1259)
T KOG0163|consen 1152 FRIPFMR 1158 (1259)
T ss_pred eecceec
Confidence 3444443
No 349
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=25.87 E-value=1.6e+02 Score=32.80 Aligned_cols=70 Identities=11% Similarity=0.114 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
.+..+..+..--.++.++++..|++.+++++..+|...- +..+-|......|+.++|..+-+.+.-..++
T Consensus 6 ~a~~err~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~----a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~ 75 (932)
T KOG2053|consen 6 LAMSERRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALY----AKVLKALSLFRLGKGDEALKLLEALYGLKGT 75 (932)
T ss_pred hccHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHH----HHHHHHHHHHHhcCchhHHHHHhhhccCCCC
Confidence 445666777888899999999999999999997765544 8889999999999999999888887733333
No 350
>PRK14154 heat shock protein GrpE; Provisional
Probab=25.54 E-value=4.2e+02 Score=24.46 Aligned_cols=13 Identities=31% Similarity=0.473 Sum_probs=6.5
Q ss_pred CCCCcccCCCCCC
Q 023865 82 AGSSDEENGNGNG 94 (276)
Q Consensus 82 ~~~~~~~~~~~~~ 94 (276)
+++.-+||||+|.
T Consensus 27 ~~~~~~~~~~~~~ 39 (208)
T PRK14154 27 AEEEQEEGGGDGS 39 (208)
T ss_pred HHHHHhhcCCCcc
Confidence 3444455555543
No 351
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=25.37 E-value=1.5e+02 Score=31.91 Aligned_cols=41 Identities=20% Similarity=0.211 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHH
Q 023865 205 GGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAA 246 (276)
Q Consensus 205 GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAK 246 (276)
.-.+.+||+.|+.-.++..+|+..-..|++++|. ++..+++
T Consensus 444 ~~kah~~la~aL~el~r~~eal~~~~alq~~~Pt-d~a~~~~ 484 (758)
T KOG1310|consen 444 IQKAHFRLARALNELTRYLEALSCHWALQMSFPT-DVARQNF 484 (758)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCch-hhhhhhh
Confidence 4579999999999999999999999999955552 4444443
No 352
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=25.32 E-value=4.4e+02 Score=23.28 Aligned_cols=22 Identities=45% Similarity=0.678 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 023865 108 RVKEIEEMRELEKKAEELQSKA 129 (276)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~ 129 (276)
|+|-+++..|||++--+|+.++
T Consensus 69 R~KRv~Qk~eLE~~k~~L~qqv 90 (135)
T KOG4196|consen 69 RVKRVQQKHELEKEKAELQQQV 90 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888777777655
No 353
>PRK00068 hypothetical protein; Validated
Probab=25.28 E-value=1.3e+02 Score=33.54 Aligned_cols=34 Identities=29% Similarity=0.324 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhhC
Q 023865 165 RATAQLMFELGQKAYGKGM---YGRAIEFLEGALTII 198 (276)
Q Consensus 165 ~e~ae~~yeaG~aALerGd---Y~qAIelLE~Al~~~ 198 (276)
++.++..|+.+++|+++|| |++|++-|+++++..
T Consensus 930 l~~a~~a~~~a~~Alk~GDw~~yG~a~~~L~~al~~~ 966 (970)
T PRK00068 930 LKEAQDAYNKAIEAQKSGDFAEYGEALKELDDALNKY 966 (970)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999997 678999999988643
No 354
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.21 E-value=6.3e+02 Score=27.99 Aligned_cols=84 Identities=21% Similarity=0.220 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023865 114 EMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEG 193 (276)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~ 193 (276)
-|++|..+..++|++.+..+ ..-.+=|..-|.--+.++==--+.+.=-++.---..|+.-.+-..+++|+.++..|+.
T Consensus 80 ai~eL~~~i~eiks~ae~Te--~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqa 157 (793)
T KOG2180|consen 80 AIEELFQKIQEIKSVAESTE--AMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQA 157 (793)
T ss_pred HHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHH
Confidence 36677777777777664332 1222223333332222221112222222333333445555566789999999999998
Q ss_pred HhhhCC
Q 023865 194 ALTIIP 199 (276)
Q Consensus 194 Al~~~~ 199 (276)
+++..+
T Consensus 158 i~~ll~ 163 (793)
T KOG2180|consen 158 ILQLLN 163 (793)
T ss_pred HHHHHH
Confidence 887554
No 355
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=25.20 E-value=24 Score=35.93 Aligned_cols=67 Identities=15% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 023865 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQL 232 (276)
Q Consensus 165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L 232 (276)
-++....+.++.++++.|++..|..+|..+-. .+.+...-.+..+..|..+...|+.+.|+.+...+
T Consensus 21 ~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~-~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~ 87 (536)
T PF04348_consen 21 EQRAQLLLLAARALLQEGDWAQAQALLNQLDP-QQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQ 87 (536)
T ss_dssp --------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHhccc-ccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccC
Confidence 44567789999999999999999999998652 22222222367788888888899999999988754
No 356
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=25.18 E-value=3.3e+02 Score=26.11 Aligned_cols=70 Identities=20% Similarity=0.114 Sum_probs=53.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH---HhCC-------------
Q 023865 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE---SNHP------------- 237 (276)
Q Consensus 174 aG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~---~~HP------------- 237 (276)
.=+..+.+|++...++.+|..+.. +++=...+++.++|..+.|..+-|-+++..|. +++|
T Consensus 105 ~~~~~~~~~~~~~Ll~~~E~sl~~----~pfWLDgq~~~~qal~~lG~~~~a~aI~~el~~fL~RlP~L~~L~F~DGtPF 180 (301)
T TIGR03362 105 DYQELLAQADWAALLQRVEQSLSL----APFWLDGQRLSAQALERLGYAAVAQAIRDELAAFLERLPGLLELKFSDGTPF 180 (301)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh----CchhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCcChhhcccCCCCCC
Confidence 334556889999999999998885 77777899999999999998777777776543 3555
Q ss_pred -CHHHHHHHHH
Q 023865 238 -SKNIRRQAAD 247 (276)
Q Consensus 238 -d~qVRqQAKq 247 (276)
+..++.|=.+
T Consensus 181 ad~~T~~WL~~ 191 (301)
T TIGR03362 181 ADDETRAWLAQ 191 (301)
T ss_pred CCHHHHHHHHh
Confidence 4567777544
No 357
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=25.09 E-value=2.3e+02 Score=22.19 Aligned_cols=29 Identities=24% Similarity=0.061 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~ 196 (276)
|......+..+=.+|+|.+||.++..+++
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455566666677887777776666554
No 358
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=25.05 E-value=1.8e+02 Score=29.09 Aligned_cols=63 Identities=14% Similarity=0.077 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCCh-------HHHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRH-------ADCIALYKQLE 233 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~-------EkAIALCQ~L~ 233 (276)
.--.|+.|...+-+++|.+|...+...++ .+.-|+ +--.+..|-+|...|+. ++|..++++..
T Consensus 305 ~l~~~El~w~~~~~~~w~~A~~~f~~L~~-~s~WSk--a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 305 HLCYFELAWCHMFQHDWEEAAEYFLRLLK-ESKWSK--AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHHHHHHchHHHHHHHHHHHHh-ccccHH--HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 34589999999999999999999999887 333343 23567788899999999 99999998876
No 359
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=24.95 E-value=1.8e+02 Score=21.32 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALT 196 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~ 196 (276)
....|..+=+.|+|.+|+.++..++.
T Consensus 11 li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 11 LISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444446666666666665554
No 360
>PF07340 Herpes_IE1: Cytomegalovirus IE1 protein; InterPro: IPR010855 Expression from a human cytomegalovirus early promoter (E1.7) has been shown to be activated in trans by the IE2 gene product. Although the IE1 gene product alone had no effect on this early viral promoter, maximal early promoter activity was detected when both IE1 and IE2 gene products were present []. The IE1 protein from cytomegalovirus is also known as UL123.; GO: 0050792 regulation of viral reproduction, 0042025 host cell nucleus
Probab=24.93 E-value=7.6e+02 Score=25.26 Aligned_cols=96 Identities=14% Similarity=0.190 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCC
Q 023865 143 EEEKRMRVRRELEKVAKEQAERRAT-AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR 221 (276)
Q Consensus 143 ~~~~~~rv~~~L~~~a~~~a~~~e~-ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq 221 (276)
..++=+-.-++|..+|...+.+++. .+...+.=+.-+++.---.|..+.+.+.......-. .+-
T Consensus 164 ~~ekwm~clK~l~d~av~~s~kle~alk~Kv~~kkddL~~k~~Yt~~Ky~e~~mk~~~~PKt---------------tn~ 228 (392)
T PF07340_consen 164 KQEKWMACLKELADVAVNASKKLEKALKEKVQQKKDDLKRKCTYTCLKYIEMFMKNLCMPKT---------------TNG 228 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCCC---------------ccc
Confidence 3566677788999999999998877 344444445555555555667777777764443322 233
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcC
Q 023865 222 HADCIALYKQLESNHPSKNIRRQAADLRYILQA 254 (276)
Q Consensus 222 ~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILEA 254 (276)
.+.|+++.+.|. +|+...+-.+++.+..+|+-
T Consensus 229 ~sQA~~fL~nlp-~~d~d~v~~~g~~iik~LD~ 260 (392)
T PF07340_consen 229 QSQAKAFLRNLP-QCDPDEVNEYGQKIIKTLDK 260 (392)
T ss_pred HHHHHHHHhccc-cCCHHHHHHHHHHHHHHhhh
Confidence 567999999998 89888999999999998864
No 361
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=24.82 E-value=2.7e+02 Score=20.10 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~ 196 (276)
.|-.....|..+=+.|+|..||.++..++.
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345566677777789999999998888776
No 362
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=24.82 E-value=16 Score=27.17 Aligned_cols=15 Identities=40% Similarity=0.558 Sum_probs=11.2
Q ss_pred cccccchheeeeccC
Q 023865 2 AVVVGNLALLLDVAS 16 (276)
Q Consensus 2 ~~~~~~~~~~~~~~~ 16 (276)
+|++|||++|-+-.-
T Consensus 14 gvIigNia~LK~sAk 28 (55)
T PF11446_consen 14 GVIIGNIAALKYSAK 28 (55)
T ss_pred HHHHhHHHHHHHhcc
Confidence 688899998866443
No 363
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=24.82 E-value=79 Score=21.44 Aligned_cols=25 Identities=12% Similarity=0.284 Sum_probs=18.4
Q ss_pred ChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023865 221 RHADCIALYKQLESNHPSKNIRRQAAD 247 (276)
Q Consensus 221 q~EkAIALCQ~L~~~HPd~qVRqQAKq 247 (276)
..+.|-++|+.++.-||+ ++.|-+.
T Consensus 2 E~dRAR~IyeR~v~~hp~--~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE--VKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHHhCCC--chHHHHH
Confidence 468899999999977766 5555443
No 364
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.80 E-value=5.4e+02 Score=28.05 Aligned_cols=72 Identities=14% Similarity=0.093 Sum_probs=45.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhCCCCCCc----------hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHH
Q 023865 176 QKAYGKGMYGRAIEFLEGALTIIPRPTFF----------GGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQA 245 (276)
Q Consensus 176 ~aALerGdY~qAIelLE~Al~~~~~nS~l----------GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQA 245 (276)
+..+-+|+.+.|+.+|+.++......-.. .......|..+.. .|+..+++.++..|.+.-.+ ...|-
T Consensus 211 IA~~A~Gs~RdALsLLdQaia~~~~~It~~~V~~~LG~~d~~~i~~Ll~aL~-~~d~~~~l~l~~~l~~~G~d--~~~~L 287 (700)
T PRK12323 211 LAQAAQGSMRDALSLTDQAIAYSAGNVSEEAVRGMLGAIDQSYLVRLLDALA-AEDGAALLAIADEMAGRSLS--FAGAL 287 (700)
T ss_pred HHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCC--HHHHH
Confidence 45678999999999999987643321100 1123344444444 79999999999999844444 44455
Q ss_pred HHHHH
Q 023865 246 ADLRY 250 (276)
Q Consensus 246 KqLLy 250 (276)
..++.
T Consensus 288 ~dLl~ 292 (700)
T PRK12323 288 QDLAS 292 (700)
T ss_pred HHHHH
Confidence 54443
No 365
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=24.72 E-value=9.5e+02 Score=27.26 Aligned_cols=52 Identities=23% Similarity=0.164 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Q 023865 144 EEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP 199 (276)
Q Consensus 144 ~~~~~rv~~~L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~ 199 (276)
+.-+.+...+|+|..+|...++......++--..|+ --.+|-+++++...-.
T Consensus 665 d~i~~~q~eel~Ke~kElq~rL~~q~KkiDh~ERA~----R~EeiPL~e~~~~~~~ 716 (988)
T KOG2072|consen 665 DQIKARQIEELEKERKELQSRLQYQEKKIDHLERAK----RLEEIPLIEKAYDERQ 716 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH----HHHhhhhHHHHHHHHH
Confidence 344556667788888888777776555554433333 3466777777665443
No 366
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=24.56 E-value=1.7e+02 Score=17.58 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=14.2
Q ss_pred HHHHHHHHHH-HcC---ChHHHHHHHHHHH
Q 023865 208 IQIWLAMAYE-ANN---RHADCIALYKQLE 233 (276)
Q Consensus 208 AQmwLAtAYq-a~G---q~EkAIALCQ~L~ 233 (276)
+++.|+..|. +.| +.++|+.+|++-.
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa 32 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAA 32 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHH
Confidence 5555665554 222 5566666666554
No 367
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=24.46 E-value=7.8e+02 Score=26.61 Aligned_cols=6 Identities=17% Similarity=-0.197 Sum_probs=2.6
Q ss_pred ccccCC
Q 023865 264 MVTIPL 269 (276)
Q Consensus 264 ~v~IPd 269 (276)
.|.|+.
T Consensus 642 ~V~v~~ 647 (782)
T PRK00409 642 EVKYLS 647 (782)
T ss_pred EEEEcc
Confidence 344444
No 368
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=24.28 E-value=1.7e+02 Score=23.47 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Q 023865 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTII 198 (276)
Q Consensus 165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~ 198 (276)
..+|...+..|..++..||..+|--+|-.++.++
T Consensus 35 ~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~ 68 (115)
T PF08969_consen 35 LRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLV 68 (115)
T ss_dssp HHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4568889999999999999999998888887655
No 369
>COG1422 Predicted membrane protein [Function unknown]
Probab=24.09 E-value=2e+02 Score=26.67 Aligned_cols=17 Identities=41% Similarity=0.602 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHhhhh
Q 023865 113 EEMRELEKKAEELQSKA 129 (276)
Q Consensus 113 ~~~~~~~~~~~~~~~~~ 129 (276)
|.|+++.+.+.|+|.+.
T Consensus 72 ekm~~~qk~m~efq~e~ 88 (201)
T COG1422 72 EKMKELQKMMKEFQKEF 88 (201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555443
No 370
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=23.96 E-value=1.5e+02 Score=23.90 Aligned_cols=31 Identities=26% Similarity=0.183 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~ 196 (276)
-.|+..+-.++.+.+.|+|..|-++|+.+-+
T Consensus 12 G~Ars~~~eAl~~a~~~~fe~A~~~l~~a~~ 42 (96)
T PF02255_consen 12 GDARSLAMEALKAAREGDFEEAEELLKEADE 42 (96)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3477889999999999999999999988755
No 371
>PF10414 CysG_dimeriser: Sirohaem synthase dimerisation region; InterPro: IPR019478 Bacterial sulphur metabolism depends on the iron-containing porphinoid sirohaem. CysG is a multi-functional enzyme with S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase, dehydrogenase and ferrochelatase activities. CysG synthesizes sirohaem from uroporphyrinogen III via reactions which encompass two branchpoint intermediates in tetrapyrrole biosynthesis, diverting flux first from protoporphyrin IX biosynthesis and then from cobalamin (vitamin B12) biosynthesis. CysG is a dimer. Its dimerisation region is 74 residues long, and acts to hold the two structurally similar protomers held together asymmetrically through a number of salt-bridges across complementary residues within the dimerisation region []. CysG dimerisation produces a series of active sites, accounting for CysG's multi-functionality, catalysing four diverse reactions: Two SAM-dependent methylations NAD+-dependent tetrapyrrole dehydrogenation Metal chelation ; GO: 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1PJT_A 1PJS_A 1PJQ_A.
Probab=23.95 E-value=2.8e+02 Score=19.86 Aligned_cols=48 Identities=29% Similarity=0.225 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCHHHHHHHHHHHhh
Q 023865 145 EKRMRVRRELEKVAKEQAERRATAQLMF-ELGQKAYGKGMYGRAIEFLEGALT 196 (276)
Q Consensus 145 ~~~~rv~~~L~~~a~~~a~~~e~ae~~y-eaG~aALerGdY~qAIelLE~Al~ 196 (276)
..|.+|++.|....+ |+.--+..+ .....++..|+..+|-+.|+.+++
T Consensus 12 ~~R~~Vk~~l~~~~~----RR~FWe~~~~g~~~~~~~~g~~~~A~~~l~~~L~ 60 (60)
T PF10414_consen 12 RFRERVKQRLPDFAE----RRRFWERFFDGPFAELVLAGDEEEAEALLEQALD 60 (60)
T ss_dssp HHHHHHHHH-SSHHH----HHHHHHHHT-HHHHHHHHTT-HHHHHHHHHHHH-
T ss_pred HHHHHHHHHCCCchH----HHHHHHHHHcCHHHHHHHCCCHHHHHHHHHHhhC
Confidence 456777777765444 222222233 456788999999999999998763
No 372
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=23.94 E-value=1.5e+02 Score=30.36 Aligned_cols=62 Identities=24% Similarity=0.171 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (276)
Q Consensus 172 yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (276)
|+.|.-|..-||.--|-+-|--++. +.+-.|++..-|+.--...|+.+.|.+|++.-.+..|
T Consensus 399 YNlg~vaV~iGD~nlA~rcfrlaL~----~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 399 YNLGFVAVTIGDFNLAKRCFRLALT----SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred hccceeEEeccchHHHHHHHHHHhc----cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 4444444444444444444444333 2223345555566555666666666666666554444
No 373
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=23.54 E-value=1.4e+02 Score=23.36 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTII 198 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~ 198 (276)
+...+..|...=..|+|..|+.++..+++.+
T Consensus 6 ai~Lv~~A~~eD~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 6 AHFLVTQAFDEDEKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HHHHHHHHHHhhHhhhHHHHHHHHHHHHHHH
Confidence 4445556666667899999999999888744
No 374
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=23.54 E-value=5.9e+02 Score=26.09 Aligned_cols=72 Identities=17% Similarity=0.162 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 023865 154 LEKVAKEQAERRATAQLMFELGQKAY--GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQ 231 (276)
Q Consensus 154 L~~~a~~~a~~~e~ae~~yeaG~aAL--erGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~ 231 (276)
|.+.-.+.+.+...++..|+.-..-+ .+..|+.|+..||.-+.. .+.++---.-+...|++.+|-.+..+
T Consensus 131 l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~--------~e~~f~~f~~l~~~Gd~~~A~e~l~~ 202 (569)
T PRK04778 131 LLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLEN--------LEEEFSQFVELTESGDYVEAREILDQ 202 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHH--------HHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 34445556666677788888776655 477899999999998873 34566666777888888888888888
Q ss_pred HH
Q 023865 232 LE 233 (276)
Q Consensus 232 L~ 233 (276)
|.
T Consensus 203 l~ 204 (569)
T PRK04778 203 LE 204 (569)
T ss_pred HH
Confidence 76
No 375
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=23.52 E-value=7.4e+02 Score=27.40 Aligned_cols=44 Identities=23% Similarity=0.194 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCCCCC-CcccccccCC
Q 023865 222 HADCIALYKQLESNHPSKNIRRQAADLRYILQAPKLKI-SQEEMVTIPL 269 (276)
Q Consensus 222 ~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILEAPkLkr-p~eW~v~IPd 269 (276)
.++=++|.|-..+-+.|+..-.-|+.+||.+ |.| |++..+.+|-
T Consensus 691 ~dq~~~Ll~~~~~WnTnsk~c~vaQ~vL~~~----l~~~~p~el~~~~g 735 (775)
T KOG0319|consen 691 EDQPEALLQFVVKWNTNSKTCHVAQRVLYEI----LKRVDPEELVRWPG 735 (775)
T ss_pred hhhHHHHHHHHHHhcCCcchhHHHHHHHHHH----HhccChHHhhcccc
Confidence 4556778887777778888888999988887 666 6777777774
No 376
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=23.42 E-value=2e+02 Score=29.93 Aligned_cols=79 Identities=18% Similarity=0.058 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq 247 (276)
+...++.+..-..-|+-+.||.-.+.|+.+.+. +.++.+.-+.||...++.+.|..-|++-.+.-.+..+++--++
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~iD~s----yikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~ 362 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEALKIDSS----YIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLRE 362 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 556777888888999999999999999985544 4569999999999999999999999887766666666665544
Q ss_pred HHH
Q 023865 248 LRY 250 (276)
Q Consensus 248 LLy 250 (276)
.-.
T Consensus 363 A~~ 365 (486)
T KOG0550|consen 363 AQL 365 (486)
T ss_pred HHH
Confidence 433
No 377
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=23.25 E-value=1.2e+02 Score=25.04 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEG 193 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~ 193 (276)
+..++.+...+++|+|..|+++|+.
T Consensus 71 ~~~~~~~~~~l~~g~~~~a~~ll~~ 95 (115)
T PF12793_consen 71 ELLEQQAEELLEQGKYEQALQLLDF 95 (115)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4577888999999999999999984
No 378
>PLN03086 PRLI-interacting factor K; Provisional
Probab=23.16 E-value=4.8e+02 Score=27.61 Aligned_cols=10 Identities=20% Similarity=0.451 Sum_probs=4.7
Q ss_pred HHHHHHHcCC
Q 023865 212 LAMAYEANNR 221 (276)
Q Consensus 212 LAtAYqa~Gq 221 (276)
-+..|++.|+
T Consensus 83 ~~~~~~~~Gd 92 (567)
T PLN03086 83 EAVSFQGNGD 92 (567)
T ss_pred eccccCCCCC
Confidence 3444455554
No 379
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.14 E-value=1.4e+02 Score=29.27 Aligned_cols=49 Identities=16% Similarity=0.064 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHH
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHAD 224 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~Ek 224 (276)
.|--....|--|+|.+||..-++... ++.+-+--++|++||-+.|+..-
T Consensus 11 ~LF~iRn~fY~Gnyq~~ine~~~~~~-----~~~~~e~d~y~~raylAlg~~~~ 59 (299)
T KOG3081|consen 11 ELFNIRNYFYLGNYQQCINEAEKFSS-----SKTDVELDVYMYRAYLALGQYQI 59 (299)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHhhcc-----ccchhHHHHHHHHHHHHcccccc
Confidence 34456778999999999999888443 22566889999999999999764
No 380
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=22.80 E-value=67 Score=22.40 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=17.1
Q ss_pred HHHHHhC-CCHHHHHHHHHHHHhhc
Q 023865 230 KQLESNH-PSKNIRRQAADLRYILQ 253 (276)
Q Consensus 230 Q~L~~~H-Pd~qVRqQAKqLLyILE 253 (276)
..|. +| ++++|++.|+.++.-+.
T Consensus 26 ~~l~-k~~~~~~i~~~A~~Li~~Wk 49 (53)
T PF08711_consen 26 NKLR-KHSENPEIRKLAKELIKKWK 49 (53)
T ss_dssp HHHH-HCTS-HHHHHHHHHHHHHHH
T ss_pred HHHH-cCCCCHHHHHHHHHHHHHHh
Confidence 3566 67 99999999999986553
No 381
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=22.41 E-value=3.7e+02 Score=29.04 Aligned_cols=72 Identities=11% Similarity=-0.011 Sum_probs=48.9
Q ss_pred HHHHHHHhcCCHHH-HHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 023865 173 ELGQKAYGKGMYGR-AIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYI 251 (276)
Q Consensus 173 eaG~aALerGdY~q-AIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyI 251 (276)
.++..||.+-.... ++..|..++... + .+++..-|.|....|.. +|+...-.+. +.|++.||+.|-+.|..
T Consensus 793 ~aA~~aLg~~g~~~~~~~~l~~aL~d~---d---~~VR~~Aa~aL~~l~~~-~a~~~L~~~L-~D~~~~VR~~A~~aL~~ 864 (897)
T PRK13800 793 AAALAALAELGCPPDDVAAATAALRAS---A---WQVRQGAARALAGAAAD-VAVPALVEAL-TDPHLDVRKAAVLALTR 864 (897)
T ss_pred HHHHHHHHhcCCcchhHHHHHHHhcCC---C---hHHHHHHHHHHHhcccc-chHHHHHHHh-cCCCHHHHHHHHHHHhc
Confidence 34555555443333 346676666522 2 36888888888888764 5666666666 69999999999998877
Q ss_pred h
Q 023865 252 L 252 (276)
Q Consensus 252 L 252 (276)
+
T Consensus 865 ~ 865 (897)
T PRK13800 865 W 865 (897)
T ss_pred c
Confidence 6
No 382
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=22.39 E-value=2.3e+02 Score=24.67 Aligned_cols=51 Identities=24% Similarity=0.191 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC-----CCCCchHHHHHHHHHHH
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP-----RPTFFGGEIQIWLAMAY 216 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~-----~nS~lGGEAQmwLAtAY 216 (276)
+-|-..+..+..|+++|+|....+.+-+|..+.. .+...||++--.|-.-|
T Consensus 29 eg~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~eL~~~Ld~E~Ggeia~nL~~LY 84 (132)
T COG1516 29 EGALKFLKRAKEAIEQEDIEEKNESIDKAIDIITELRASLDYEKGGEIAQNLDALY 84 (132)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCHhhcchHHHHHHHHH
Confidence 4566788889999999999999999999987654 45556666654444444
No 383
>COG4715 Uncharacterized conserved protein [Function unknown]
Probab=22.31 E-value=8.5e+02 Score=26.15 Aligned_cols=82 Identities=23% Similarity=0.205 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHH
Q 023865 147 RMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCI 226 (276)
Q Consensus 147 ~~rv~~~L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAI 226 (276)
.++-+-=|.+.+++.+++..+.+..+--...-...|+...|.++=.-.....| ..-....||++.-|.+.|+.+.+.
T Consensus 349 ~~~a~~wl~~~~r~a~~q~~t~q~~q~l~el~~~~g~~~~a~~Laq~~F~r~p---~~~sy~~lw~~~~~~gi~~~e~~~ 425 (587)
T COG4715 349 PSKAELWLARGIRTAREQLQTTQLPQTLAELKEEEGRLGFAAELAQEAFFRTP---NGRSYLGLWLAAVYAGIGREEREA 425 (587)
T ss_pred hhHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHhhcchHHHHHHHHHHccCCC---CccchhhHHHHHHHhhhchHHHHH
Confidence 34555556666666555556666666667778889999998876544444333 333479999999999999999888
Q ss_pred HHHHH
Q 023865 227 ALYKQ 231 (276)
Q Consensus 227 ALCQ~ 231 (276)
++-+.
T Consensus 426 a~~~~ 430 (587)
T COG4715 426 ALAYL 430 (587)
T ss_pred HHHHH
Confidence 87665
No 384
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=21.90 E-value=2.4e+02 Score=25.97 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=22.0
Q ss_pred hcCCHHHHHHHHHHHhhhCC--CCCCchHHHHHHHHHHHHHcCC
Q 023865 180 GKGMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEANNR 221 (276)
Q Consensus 180 erGdY~qAIelLE~Al~~~~--~nS~lGGEAQmwLAtAYqa~Gq 221 (276)
.+++|++||++|.......- .....|+..-++|+.+|...+.
T Consensus 2 ~~kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~ 45 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSED 45 (260)
T ss_dssp HTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-
T ss_pred ccccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC
Confidence 45666666666655442221 2233455666666777766553
No 385
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=21.77 E-value=8e+02 Score=25.25 Aligned_cols=78 Identities=19% Similarity=0.119 Sum_probs=57.4
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCCh
Q 023865 148 MRVRREL---EKVAKEQAERRATAQLMFELGQKAY--GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRH 222 (276)
Q Consensus 148 ~rv~~~L---~~~a~~~a~~~e~ae~~yeaG~aAL--erGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~ 222 (276)
..|++.| .+.-.+.+.+....+..|+.-...+ .+..|+.|+..||.-+.. .+-++--..-+..+|++
T Consensus 118 ~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~--------ie~~F~~f~~lt~~GD~ 189 (560)
T PF06160_consen 118 KEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLEN--------IEEEFSEFEELTENGDY 189 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHH--------HHHHHHHHHHHHHCCCH
Confidence 3444444 3444555666677777888777666 478899999999998873 35666677788899999
Q ss_pred HHHHHHHHHHH
Q 023865 223 ADCIALYKQLE 233 (276)
Q Consensus 223 EkAIALCQ~L~ 233 (276)
.+|-.+...|.
T Consensus 190 ~~A~eil~~l~ 200 (560)
T PF06160_consen 190 LEAREILEKLK 200 (560)
T ss_pred HHHHHHHHHHH
Confidence 99999888887
No 386
>smart00770 Zn_dep_PLPC Zinc dependent phospholipase C (alpha toxin). This domain conveys a zinc dependent phospholipase C activity (EC 3.1.4.3). It is found in a monomeric phospholipase C of Bacillus cereus as well as in the alpha toxin of Clostridium perfringens and Clostridium bifermentans, which is involved in haemolysis and cell rupture. It is also found in a lecithinase of Listeria monocytogenes, which is involved in breaking the 2-membrane vacuoles that surround the bacterium. Structure information: PDB 1ca1.
Probab=21.73 E-value=1.5e+02 Score=27.88 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP 199 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~ 199 (276)
.+++..|+.+..++++|+|..|.-+|-.+|...+
T Consensus 112 ~~~~ky~~~A~~~~~~g~~~~A~~~LG~a~Hy~~ 145 (241)
T smart00770 112 DTGRKYFKLALNEWKKGNYKKAFFYLGRACHYLG 145 (241)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999997654
No 387
>PTZ00429 beta-adaptin; Provisional
Probab=21.56 E-value=9.4e+02 Score=26.13 Aligned_cols=129 Identities=13% Similarity=0.139 Sum_probs=78.5
Q ss_pred HHHH-HHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Q 023865 119 EKKA-EELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTI 197 (276)
Q Consensus 119 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~ 197 (276)
-+|+ |.+|.+....+.++.-=..+..-+-.-+|.+|...-. ..+ +..++.-.+++-.|. ..-.+|=.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~f~~~~kge~~ELr~~L~s~~~--~~k----k~alKkvIa~mt~G~--DvS~LF~dVvk~ 76 (746)
T PTZ00429 5 LRKARERIQRKLEETKTGSKYFAQTRRGEGAELQNDLNGTDS--YRK----KAAVKRIIANMTMGR--DVSYLFVDVVKL 76 (746)
T ss_pred HHHHHHHHHHHhhcCCCccccccccccchHHHHHHHHHCCCH--HHH----HHHHHHHHHHHHCCC--CchHHHHHHHHH
Confidence 3455 7788888888765433222222223446777754322 222 335666677788884 666777777776
Q ss_pred CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhhcCCC
Q 023865 198 IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES--NHPSKNIRRQAADLRYILQAPK 256 (276)
Q Consensus 198 ~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~--~HPd~qVRqQAKqLLyILEAPk 256 (276)
.+.+. .-.+=..+|...-.+..+.+.|+-.|..|.+ +||||-||--|=+.|.-+--|.
T Consensus 77 ~~S~d-~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~ 136 (746)
T PTZ00429 77 APSTD-LELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSS 136 (746)
T ss_pred hCCCC-HHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH
Confidence 66553 3344444555544577777777666655542 4799999999988877654443
No 388
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=21.52 E-value=94 Score=32.54 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=26.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 209 QIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 209 QmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
-+||+.+|...|+.++|..+++.|. .|-+
T Consensus 540 t~Wl~~~~~~~g~~~~a~~ll~~l~-~~a~ 568 (612)
T COG3387 540 TLWLSEYYLALGRLDEAKKLLEWLL-AFAS 568 (612)
T ss_pred hhHHHHHHHHccchHHHHHHHHHHH-HhcC
Confidence 4999999999999999999999998 5544
No 389
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=21.47 E-value=9.1e+02 Score=24.91 Aligned_cols=67 Identities=15% Similarity=0.254 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRY 250 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLy 250 (276)
.|+....++.+ ...||+++..++...- ......++-+++.+. .||+.-+-+| .+
T Consensus 189 ~~~~i~~~i~~--l~~aie~Y~~f~~~~~-------------------~~~~~~~Lp~L~~v~-~~gn~tvye~----~~ 242 (507)
T PF05600_consen 189 LFDEIVEAISD--LQEAIEYYQAFVEFVH-------------------DESESEVLPLLRFVQ-EHGNTTVYEW----RT 242 (507)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHH-------------------cCccchhhHHHHHHH-hCCCCcHhHH----Hh
Confidence 44444555522 6777777777665322 344556788888888 8999999887 55
Q ss_pred hhcCCCCCCCccc
Q 023865 251 ILQAPKLKISQEE 263 (276)
Q Consensus 251 ILEAPkLkrp~eW 263 (276)
+...+...+|+.-
T Consensus 243 g~~P~~ve~~~~~ 255 (507)
T PF05600_consen 243 GEAPEKVEEPPVE 255 (507)
T ss_pred cCCcccccCCccc
Confidence 5555556666433
No 390
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=21.33 E-value=2.1e+02 Score=24.69 Aligned_cols=31 Identities=23% Similarity=0.194 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~ 196 (276)
.++...+..+...+.+|+|.+|-..|..+..
T Consensus 115 ~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 115 AQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 6778889999999999999999999999875
No 391
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=21.23 E-value=7.7e+02 Score=24.17 Aligned_cols=73 Identities=25% Similarity=0.295 Sum_probs=42.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023865 99 YDWEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELG 175 (276)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~~a~~~a~~~e~ae~~yeaG 175 (276)
..||.++-+++++++.+-+.-+++.+.-.++.+--.+ -.....+..-++.++++-|.+.-+--++....|+.+
T Consensus 130 ~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~ae----i~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~ 202 (294)
T COG1340 130 PEEERELVQKIKELRKELEDAKKALEENEKLKELKAE----IDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEA 202 (294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888888877777777666655544433321 222344555666666666665444444444455444
No 392
>PRK04863 mukB cell division protein MukB; Provisional
Probab=21.14 E-value=1.4e+03 Score=27.00 Aligned_cols=71 Identities=18% Similarity=0.257 Sum_probs=39.1
Q ss_pred cCCHHHHHHHHHHHhhhCCCCCCchHHHHHH---------------------HHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 181 KGMYGRAIEFLEGALTIIPRPTFFGGEIQIW---------------------LAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 181 rGdY~qAIelLE~Al~~~~~nS~lGGEAQmw---------------------LAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
...|.++|+.|+.|-..+....----+++-| |..+-....+..++...+..+.-+-+-+
T Consensus 413 l~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~ 492 (1486)
T PRK04863 413 AIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRS 492 (1486)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHH
Confidence 3678999999999888876332221223322 3333334444455555444444445555
Q ss_pred HHHHHHHHHHHh
Q 023865 240 NIRRQAADLRYI 251 (276)
Q Consensus 240 qVRqQAKqLLyI 251 (276)
....||+.+|-.
T Consensus 493 ~a~~~~~~~~~~ 504 (1486)
T PRK04863 493 EAWDVARELLRR 504 (1486)
T ss_pred HHHHHHHHHHHH
Confidence 566666666543
No 393
>PF13934 ELYS: Nuclear pore complex assembly
Probab=21.11 E-value=3.4e+02 Score=24.56 Aligned_cols=56 Identities=14% Similarity=0.101 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
..+-.|.-+|.+|+|.+||++|-. |...+ .---+.+.+....|+..-|++.++.-.
T Consensus 80 ~~~~~g~W~LD~~~~~~A~~~L~~-----ps~~~---~~~~~Il~~L~~~~~~~lAL~y~~~~~ 135 (226)
T PF13934_consen 80 IKFIQGFWLLDHGDFEEALELLSH-----PSLIP---WFPDKILQALLRRGDPKLALRYLRAVG 135 (226)
T ss_pred HHHHHHHHHhChHhHHHHHHHhCC-----CCCCc---ccHHHHHHHHHHCCChhHHHHHHHhcC
Confidence 456678889999999999998832 21111 112245555556788888888877654
No 394
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=21.00 E-value=6.1e+02 Score=22.73 Aligned_cols=52 Identities=21% Similarity=0.081 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 023865 145 EKRMRVRRELEKVAKEQAERRAT-AQ----LMFELGQKAYGKGMYGRAIEFLEGALT 196 (276)
Q Consensus 145 ~~~~rv~~~L~~~a~~~a~~~e~-ae----~~yeaG~aALerGdY~qAIelLE~Al~ 196 (276)
+...++++.+.+.|+++++++-. ++ ..-+.+...+...=..-|++.-++++.
T Consensus 125 ~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~~Lk~ei~~lAv~iA~kiL~ 181 (205)
T PRK06231 125 YEALQLKSELEKEANRQANLIIFQARQEIEKERRELKEQLQKESVELAMLAAEELIK 181 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666655422 32 233334444455555555555555543
No 395
>PF15384 DUF4610: Domain of unknown function (DUF4610)
Probab=20.87 E-value=83 Score=29.16 Aligned_cols=49 Identities=24% Similarity=0.260 Sum_probs=30.6
Q ss_pred cCCccccceecCCCCCccchhhhhhc-cccCccCccccceEEeecccccccccccCCC
Q 023865 26 SRPLALDVLLNLPKRDLHLNYSALAN-KSLDSEGESWNHRVVTRGKVNSKVNAVDFDA 82 (276)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (276)
-++.+.. -+|.+++...-...+. |-+ .|+|.+.--+-|.|. .-||||||
T Consensus 148 ~~~~g~~---flpd~d~qr~g~g~~vrrr~--PGeSLINPg~K~kKp---A~GV~FDD 197 (197)
T PF15384_consen 148 PQPAGPQ---FLPDPDPQRGGPGPGVRRRC--PGESLINPGFKSKKP---ASGVDFDD 197 (197)
T ss_pred CCcCCcc---cCCCcccccCCCCcceeccC--CCccccCCcccccCC---CCCCCCCC
Confidence 4455555 5677666555444444 334 488877777766665 45999986
No 396
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=20.71 E-value=5.7e+02 Score=24.84 Aligned_cols=68 Identities=12% Similarity=0.007 Sum_probs=51.9
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 023865 176 QKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLR 249 (276)
Q Consensus 176 ~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLL 249 (276)
...++.++...+|...+.-+...|.+.. .+..|..-|+-.|+.++|..=|+.+. +. .|+--++|.-+.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~----~RhflfqLlcvaGdw~kAl~Ql~l~a-~l-~p~~t~~a~lyr 76 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAG----GRHFLFQLLCVAGDWEKALAQLNLAA-TL-SPQDTVGASLYR 76 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCcccc----chhHHHHHHhhcchHHHHHHHHHHHh-hc-CcccchHHHHHH
Confidence 4567888999999999998886665555 56778888999999999999999888 44 455555555443
No 397
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=20.68 E-value=3e+02 Score=22.61 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 023865 223 ADCIALYKQLESNHPSKNIRRQAADLR 249 (276)
Q Consensus 223 EkAIALCQ~L~~~HPd~qVRqQAKqLL 249 (276)
+-+.+|-+.|. |++|.++-.|=.+|
T Consensus 37 ~a~raL~krl~--~~n~~vql~AL~lL 61 (133)
T cd03561 37 EAARAIRKKIK--YGNPHVQLLALTLL 61 (133)
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHH
Confidence 33334444443 56666555554333
No 398
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=20.51 E-value=4.2e+02 Score=26.43 Aligned_cols=64 Identities=16% Similarity=0.257 Sum_probs=43.1
Q ss_pred HHHHHHHHhhhCCCCC--CchHHHHHHHHHHHHHcCChHHHH-----------------------HHHHHHHHhCCCHHH
Q 023865 187 AIEFLEGALTIIPRPT--FFGGEIQIWLAMAYEANNRHADCI-----------------------ALYKQLESNHPSKNI 241 (276)
Q Consensus 187 AIelLE~Al~~~~~nS--~lGGEAQmwLAtAYqa~Gq~EkAI-----------------------ALCQ~L~~~HPd~qV 241 (276)
-|.+|+..+....... ..-+=+-..|...|...-...+.+ .||+-+ +||.+++
T Consensus 247 Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLm--t~~~~~~ 324 (446)
T PF10165_consen 247 LLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLM--TSPDPQL 324 (446)
T ss_pred HHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHh--CCCCchH
Confidence 3567888887665333 344457778888888763322222 234444 5999999
Q ss_pred HHHHHHHHHhh
Q 023865 242 RRQAADLRYIL 252 (276)
Q Consensus 242 RqQAKqLLyIL 252 (276)
+..+..+|++|
T Consensus 325 k~~vaellf~L 335 (446)
T PF10165_consen 325 KDAVAELLFVL 335 (446)
T ss_pred HHHHHHHHHHH
Confidence 99999999998
No 399
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=20.33 E-value=3.5e+02 Score=20.94 Aligned_cols=29 Identities=28% Similarity=0.262 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 023865 163 ERRATAQLMFELGQKAYGKGMYGRAIEFL 191 (276)
Q Consensus 163 ~~~e~ae~~yeaG~aALerGdY~qAIelL 191 (276)
.-.+-|+..++.|..-|++|||-.|+.-+
T Consensus 30 ~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~ 58 (75)
T PF04010_consen 30 EILEMAESYLEDGKYFLEKGDYVNALACF 58 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34566888999999999999999988644
No 400
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=20.29 E-value=7.5e+02 Score=26.73 Aligned_cols=7 Identities=29% Similarity=0.282 Sum_probs=3.1
Q ss_pred ccccCCC
Q 023865 264 MVTIPLI 270 (276)
Q Consensus 264 ~v~IPdL 270 (276)
.|.||.+
T Consensus 630 ~V~v~~~ 636 (771)
T TIGR01069 630 KVRIRYF 636 (771)
T ss_pred EEEEccC
Confidence 3444444
No 401
>PRK05629 hypothetical protein; Validated
Probab=20.12 E-value=1.6e+02 Score=27.18 Aligned_cols=63 Identities=17% Similarity=0.047 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHH-----HHHHHHHcCC-hHHHHHHHHHHHHhCC
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIW-----LAMAYEANNR-HADCIALYKQLESNHP 237 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmw-----LAtAYqa~Gq-~EkAIALCQ~L~~~HP 237 (276)
...-.=..|+-.|++..|+..|..++..- ..+...-+.+. +...+...|. .++ .+.+.+- -||
T Consensus 195 ~~iF~l~dAv~~g~~~~Al~~l~~l~~~g--~~pi~il~~l~~~~r~l~~l~~~~~~~~~~--~ia~~l~-i~p 263 (318)
T PRK05629 195 VSGFDIADLACAGQVSKAVASTRRALQLG--VSPVALAAALSMKVGQIARLYSTRGRIDSF--ELAKELG-MPP 263 (318)
T ss_pred chHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHHhhcCCCCHH--HHHHHcC-CCh
Confidence 44555678899999999999999987642 33322211111 3466676674 233 5666665 566
No 402
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=20.05 E-value=23 Score=39.30 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=16.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHH
Q 023865 98 EYDWEKEMRRRVKEIEEMRELEKK 121 (276)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~ 121 (276)
+++||.+...-+.+.+++.|=|..
T Consensus 67 f~~~e~dvDdeveddd~~~edEed 90 (1024)
T KOG1999|consen 67 FIDREADVDDEVEDDDDDEEDEED 90 (1024)
T ss_pred ccccccccccccccccchhccCcc
Confidence 478888777777777766654443
Done!