Query 023865
Match_columns 276
No_of_seqs 102 out of 107
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 14:06:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023865.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023865hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gyz_A Chaperone protein IPGC; 98.8 4.2E-08 1.4E-12 78.7 12.1 82 168-253 70-151 (151)
2 2xev_A YBGF; tetratricopeptide 98.8 1.2E-07 4.2E-12 68.2 12.1 85 169-254 40-124 (129)
3 2l6j_A TPR repeat-containing p 98.6 1.2E-06 4.1E-11 61.2 12.0 69 167-239 3-71 (111)
4 2yhc_A BAMD, UPF0169 lipoprote 98.5 6.2E-07 2.1E-11 72.7 10.6 73 168-241 4-76 (225)
5 2xev_A YBGF; tetratricopeptide 98.5 1.5E-06 5E-11 62.5 10.4 69 170-239 4-72 (129)
6 3ma5_A Tetratricopeptide repea 98.5 6.9E-07 2.4E-11 64.8 8.6 81 168-252 7-90 (100)
7 2vgx_A Chaperone SYCD; alterna 98.4 2.2E-06 7.4E-11 66.6 11.1 82 168-253 55-140 (148)
8 3upv_A Heat shock protein STI1 98.4 1.4E-06 4.8E-11 63.5 9.4 67 168-238 4-70 (126)
9 4gco_A Protein STI-1; structur 98.4 1.3E-06 4.3E-11 66.5 9.4 65 170-238 15-79 (126)
10 3qky_A Outer membrane assembly 98.4 2.1E-06 7.2E-11 70.0 11.3 72 167-239 14-85 (261)
11 1elr_A TPR2A-domain of HOP; HO 98.4 3.2E-06 1.1E-10 59.3 10.6 86 168-253 38-126 (131)
12 2xcb_A PCRH, regulatory protei 98.4 1.9E-06 6.5E-11 65.1 10.0 82 168-253 52-137 (142)
13 2v5f_A Prolyl 4-hydroxylase su 98.4 4.2E-06 1.4E-10 62.3 11.2 78 168-245 5-85 (104)
14 3qky_A Outer membrane assembly 98.4 3.4E-06 1.2E-10 68.8 11.5 84 168-252 148-241 (261)
15 3k9i_A BH0479 protein; putativ 98.3 6.1E-06 2.1E-10 60.3 10.6 79 167-249 26-105 (117)
16 4gcn_A Protein STI-1; structur 98.3 5.6E-06 1.9E-10 62.6 10.5 79 168-246 42-123 (127)
17 2kc7_A BFR218_protein; tetratr 98.3 5.1E-06 1.7E-10 58.1 8.9 66 171-240 3-69 (99)
18 1na3_A Designed protein CTPR2; 98.3 7.6E-06 2.6E-10 55.3 9.4 68 168-239 9-76 (91)
19 3sz7_A HSC70 cochaperone (SGT) 98.3 5.2E-06 1.8E-10 63.5 9.4 69 168-240 45-113 (164)
20 1elw_A TPR1-domain of HOP; HOP 98.3 4.8E-06 1.7E-10 57.3 8.4 63 171-237 41-103 (118)
21 2xcb_A PCRH, regulatory protei 98.2 6.4E-06 2.2E-10 62.2 9.4 68 168-239 18-85 (142)
22 4gcn_A Protein STI-1; structur 98.2 3.5E-06 1.2E-10 63.7 7.9 67 167-237 7-73 (127)
23 3rkv_A Putative peptidylprolyl 98.2 5.8E-06 2E-10 63.1 8.9 77 169-249 64-142 (162)
24 3vtx_A MAMA; tetratricopeptide 98.2 4.3E-06 1.5E-10 64.0 8.2 71 166-240 3-73 (184)
25 3gyz_A Chaperone protein IPGC; 98.2 6.9E-06 2.3E-10 65.7 9.3 68 167-238 35-102 (151)
26 1hxi_A PEX5, peroxisome target 98.2 6.7E-06 2.3E-10 61.8 8.6 62 172-237 21-82 (121)
27 2kat_A Uncharacterized protein 98.2 5.4E-06 1.8E-10 59.9 7.7 81 168-252 19-102 (115)
28 4ga2_A E3 SUMO-protein ligase 98.2 9.3E-06 3.2E-10 62.8 9.5 76 167-246 30-106 (150)
29 2vgx_A Chaperone SYCD; alterna 98.2 9.1E-06 3.1E-10 63.1 9.4 69 167-239 20-88 (148)
30 3q49_B STIP1 homology and U bo 98.2 1.1E-05 3.7E-10 58.5 9.1 66 168-237 43-108 (137)
31 1a17_A Serine/threonine protei 98.2 3.3E-05 1.1E-09 56.8 11.4 69 168-240 47-115 (166)
32 2dba_A Smooth muscle cell asso 98.1 3.5E-05 1.2E-09 55.7 11.2 67 168-238 65-131 (148)
33 3upv_A Heat shock protein STI1 98.1 1.9E-05 6.6E-10 57.4 9.7 65 168-236 38-102 (126)
34 1elr_A TPR2A-domain of HOP; HO 98.1 1.8E-05 6.2E-10 55.4 9.2 68 167-238 3-70 (131)
35 3urz_A Uncharacterized protein 98.1 4.7E-06 1.6E-10 67.2 6.9 69 167-239 3-87 (208)
36 4gco_A Protein STI-1; structur 98.1 2.4E-05 8.1E-10 59.3 10.4 68 168-239 47-114 (126)
37 2kck_A TPR repeat; tetratricop 98.1 1.7E-05 5.7E-10 54.3 8.5 68 170-239 42-110 (112)
38 2dba_A Smooth muscle cell asso 98.1 7.1E-05 2.4E-09 54.0 12.0 71 168-239 28-98 (148)
39 2vyi_A SGTA protein; chaperone 98.1 4.6E-05 1.6E-09 53.0 10.7 67 168-238 46-112 (131)
40 2kck_A TPR repeat; tetratricop 98.1 2.6E-05 8.9E-10 53.3 9.0 64 171-238 9-72 (112)
41 4abn_A Tetratricopeptide repea 98.1 6.8E-05 2.3E-09 68.8 14.2 71 168-242 102-173 (474)
42 2lni_A Stress-induced-phosphop 98.1 2.5E-05 8.6E-10 55.2 8.9 68 168-239 50-117 (133)
43 2fbn_A 70 kDa peptidylprolyl i 98.1 3.8E-05 1.3E-09 60.4 10.7 80 169-252 89-169 (198)
44 1hxi_A PEX5, peroxisome target 98.1 8.1E-06 2.8E-10 61.4 6.5 67 168-238 51-117 (121)
45 3rkv_A Putative peptidylprolyl 98.0 3.8E-05 1.3E-09 58.5 10.1 47 168-217 97-143 (162)
46 2vyi_A SGTA protein; chaperone 98.0 0.0001 3.5E-09 51.3 11.3 70 166-239 10-79 (131)
47 1na0_A Designed protein CTPR3; 98.0 4.7E-05 1.6E-09 52.6 9.3 68 168-239 43-110 (125)
48 1elw_A TPR1-domain of HOP; HOP 98.0 3.6E-05 1.2E-09 52.9 8.5 68 167-238 3-70 (118)
49 3vtx_A MAMA; tetratricopeptide 98.0 1.8E-05 6.3E-10 60.5 7.6 67 168-238 107-173 (184)
50 3sz7_A HSC70 cochaperone (SGT) 98.0 2.7E-05 9.3E-10 59.5 8.3 69 166-238 9-77 (164)
51 4i17_A Hypothetical protein; T 98.0 3.3E-05 1.1E-09 61.2 9.0 66 170-239 44-109 (228)
52 2fbn_A 70 kDa peptidylprolyl i 98.0 8.1E-05 2.8E-09 58.5 11.0 62 168-233 122-184 (198)
53 3q49_B STIP1 homology and U bo 98.0 4.2E-05 1.4E-09 55.3 8.6 68 168-239 9-76 (137)
54 2yhc_A BAMD, UPF0169 lipoprote 98.0 4.1E-05 1.4E-09 62.0 9.3 77 169-246 42-136 (225)
55 3urz_A Uncharacterized protein 98.0 3.5E-05 1.2E-09 62.1 8.8 65 171-239 57-121 (208)
56 1na0_A Designed protein CTPR3; 97.9 0.00017 5.7E-09 49.8 10.7 68 168-239 9-76 (125)
57 1a17_A Serine/threonine protei 97.9 7.1E-05 2.4E-09 55.0 9.0 67 167-237 12-78 (166)
58 2pl2_A Hypothetical conserved 97.9 3.8E-05 1.3E-09 62.2 8.2 67 169-239 6-72 (217)
59 2lni_A Stress-induced-phosphop 97.9 0.0001 3.5E-09 52.1 9.4 67 168-238 16-82 (133)
60 2gw1_A Mitochondrial precursor 97.9 7E-05 2.4E-09 64.7 10.0 70 165-239 3-72 (514)
61 3qou_A Protein YBBN; thioredox 97.9 4.3E-05 1.5E-09 65.0 8.3 70 169-242 118-187 (287)
62 1hh8_A P67PHOX, NCF-2, neutrop 97.8 0.00027 9.1E-09 54.8 11.7 75 168-242 71-157 (213)
63 2r5s_A Uncharacterized protein 97.8 2.2E-05 7.6E-10 61.0 5.2 68 170-241 8-75 (176)
64 3ieg_A DNAJ homolog subfamily 97.8 0.00037 1.3E-08 56.6 12.3 63 175-237 241-303 (359)
65 3ieg_A DNAJ homolog subfamily 97.8 0.0001 3.5E-09 59.9 8.8 66 168-237 37-102 (359)
66 3fp2_A TPR repeat-containing p 97.8 5.5E-05 1.9E-09 66.1 7.4 70 165-238 22-91 (537)
67 2fo7_A Synthetic consensus TPR 97.7 0.00028 9.7E-09 48.7 9.4 65 170-238 71-135 (136)
68 4i17_A Hypothetical protein; T 97.7 0.00012 3.9E-09 58.1 8.3 69 168-239 7-75 (228)
69 2vq2_A PILW, putative fimbrial 97.7 0.00039 1.3E-08 53.0 10.7 63 168-234 42-105 (225)
70 3uq3_A Heat shock protein STI1 97.7 0.00016 5.6E-09 56.3 8.7 68 166-238 3-70 (258)
71 1xnf_A Lipoprotein NLPI; TPR, 97.7 0.00022 7.4E-09 56.5 9.5 69 168-240 77-145 (275)
72 3ro2_A PINS homolog, G-protein 97.7 0.00039 1.3E-08 55.3 10.9 66 168-233 5-70 (338)
73 3u4t_A TPR repeat-containing p 97.7 0.00013 4.6E-09 58.1 8.1 68 170-238 39-106 (272)
74 2c2l_A CHIP, carboxy terminus 97.7 0.00011 3.9E-09 62.4 8.2 68 168-239 38-105 (281)
75 1hh8_A P67PHOX, NCF-2, neutrop 97.7 0.00021 7.2E-09 55.4 9.0 67 168-238 37-103 (213)
76 2fo7_A Synthetic consensus TPR 97.7 0.00018 6.2E-09 49.7 7.7 67 168-238 35-101 (136)
77 2pl2_A Hypothetical conserved 97.7 0.00023 7.9E-09 57.6 9.4 68 168-240 118-185 (217)
78 1ihg_A Cyclophilin 40; ppiase 97.7 0.00033 1.1E-08 63.1 11.2 82 166-251 271-353 (370)
79 3u4t_A TPR repeat-containing p 97.6 0.00033 1.1E-08 55.8 9.8 66 170-239 76-141 (272)
80 1xnf_A Lipoprotein NLPI; TPR, 97.6 0.00036 1.2E-08 55.3 9.8 67 168-238 43-109 (275)
81 3uq3_A Heat shock protein STI1 97.6 0.00072 2.5E-08 52.6 11.3 67 168-238 139-205 (258)
82 1p5q_A FKBP52, FK506-binding p 97.6 0.00061 2.1E-08 59.7 12.2 68 168-239 196-263 (336)
83 3as5_A MAMA; tetratricopeptide 97.6 0.00034 1.2E-08 51.3 8.9 64 170-237 112-175 (186)
84 1p5q_A FKBP52, FK506-binding p 97.6 0.00028 9.7E-09 61.8 9.9 74 165-238 144-228 (336)
85 4eqf_A PEX5-related protein; a 97.6 0.00029 1E-08 59.2 9.4 68 168-239 99-166 (365)
86 3sf4_A G-protein-signaling mod 97.6 0.00069 2.4E-08 56.4 11.4 66 168-233 9-74 (406)
87 2e2e_A Formate-dependent nitri 97.6 0.00032 1.1E-08 53.6 8.7 69 168-240 78-149 (177)
88 3ro3_A PINS homolog, G-protein 97.6 0.0028 9.7E-08 45.0 13.0 67 167-233 48-116 (164)
89 4a1s_A PINS, partner of inscut 97.6 0.00026 8.9E-09 60.1 8.7 69 165-233 45-113 (411)
90 2vq2_A PILW, putative fimbrial 97.6 0.00058 2E-08 52.0 9.7 65 169-237 114-178 (225)
91 3as5_A MAMA; tetratricopeptide 97.6 0.00046 1.6E-08 50.6 8.8 68 168-239 76-143 (186)
92 2e2e_A Formate-dependent nitri 97.5 0.00039 1.3E-08 53.1 8.4 68 168-239 44-114 (177)
93 1kt0_A FKBP51, 51 kDa FK506-bi 97.5 0.00038 1.3E-08 63.8 9.8 68 168-239 317-384 (457)
94 1fch_A Peroxisomal targeting s 97.5 0.00032 1.1E-08 58.2 8.4 68 168-239 98-165 (368)
95 2hr2_A Hypothetical protein; a 97.5 0.00033 1.1E-08 59.0 8.5 71 165-235 8-86 (159)
96 2q7f_A YRRB protein; TPR, prot 97.5 0.00027 9.3E-09 54.9 7.3 65 170-238 127-191 (243)
97 3hym_B Cell division cycle pro 97.5 0.0005 1.7E-08 55.5 8.9 60 174-237 62-122 (330)
98 3bee_A Putative YFRE protein; 97.5 0.00044 1.5E-08 51.8 7.9 66 169-238 7-75 (93)
99 2ho1_A Type 4 fimbrial biogene 97.5 0.00032 1.1E-08 55.4 7.5 63 168-234 71-133 (252)
100 2y4t_A DNAJ homolog subfamily 97.5 0.00089 3E-08 57.3 10.7 69 168-240 60-128 (450)
101 2ho1_A Type 4 fimbrial biogene 97.5 0.0018 6.1E-08 51.1 11.7 67 168-238 141-207 (252)
102 1ihg_A Cyclophilin 40; ppiase 97.5 0.00029 9.8E-09 63.5 7.9 75 164-238 219-305 (370)
103 3cv0_A Peroxisome targeting si 97.4 0.00053 1.8E-08 55.3 8.6 68 168-239 55-122 (327)
104 2y4t_A DNAJ homolog subfamily 97.4 0.00061 2.1E-08 58.3 9.4 64 171-238 298-361 (450)
105 3ro3_A PINS homolog, G-protein 97.4 0.0012 4.1E-08 47.0 9.4 67 167-233 88-156 (164)
106 2q7f_A YRRB protein; TPR, prot 97.4 0.00076 2.6E-08 52.4 9.0 67 168-238 91-157 (243)
107 4eqf_A PEX5-related protein; a 97.4 0.0006 2.1E-08 57.2 8.7 67 168-238 213-279 (365)
108 3gw4_A Uncharacterized protein 97.4 0.0018 6.1E-08 49.2 10.6 89 166-254 105-198 (203)
109 3cv0_A Peroxisome targeting si 97.4 0.0015 5E-08 52.7 10.5 67 168-238 206-272 (327)
110 1kt0_A FKBP51, 51 kDa FK506-bi 97.4 0.0011 3.9E-08 60.7 11.0 69 168-240 351-420 (457)
111 2if4_A ATFKBP42; FKBP-like, al 97.4 0.00032 1.1E-08 61.6 6.8 74 165-238 176-262 (338)
112 1fch_A Peroxisomal targeting s 97.4 0.00088 3E-08 55.5 9.0 68 168-239 64-131 (368)
113 3hym_B Cell division cycle pro 97.3 0.0012 4E-08 53.4 9.4 75 169-247 237-312 (330)
114 3k9i_A BH0479 protein; putativ 97.3 0.00019 6.5E-09 52.3 4.1 59 180-239 2-60 (117)
115 4ga2_A E3 SUMO-protein ligase 97.3 0.0013 4.4E-08 50.7 8.9 72 168-243 65-138 (150)
116 4gyw_A UDP-N-acetylglucosamine 97.3 0.00067 2.3E-08 67.6 9.1 68 168-239 43-110 (723)
117 2r5s_A Uncharacterized protein 97.3 0.0012 4.1E-08 51.2 8.6 64 168-233 108-171 (176)
118 1w3b_A UDP-N-acetylglucosamine 97.3 0.00069 2.4E-08 57.6 7.6 67 168-238 67-133 (388)
119 2if4_A ATFKBP42; FKBP-like, al 97.3 0.00049 1.7E-08 60.5 6.8 66 169-238 231-296 (338)
120 2c2l_A CHIP, carboxy terminus 97.3 0.0005 1.7E-08 58.4 6.6 68 168-239 4-71 (281)
121 3edt_B KLC 2, kinesin light ch 97.2 0.0049 1.7E-07 48.2 11.6 70 166-235 125-198 (283)
122 3qou_A Protein YBBN; thioredox 97.2 0.001 3.4E-08 56.6 8.2 72 177-252 194-268 (287)
123 4b4t_Q 26S proteasome regulato 97.2 0.0011 3.6E-08 57.0 8.3 67 170-236 6-85 (434)
124 3gw4_A Uncharacterized protein 97.2 0.0092 3.2E-07 45.2 12.6 68 166-233 64-134 (203)
125 4f3v_A ESX-1 secretion system 97.2 0.0032 1.1E-07 57.0 11.6 69 168-238 171-240 (282)
126 1qqe_A Vesicular transport pro 97.2 0.0015 5.2E-08 55.1 8.9 73 168-240 158-233 (292)
127 2vsy_A XCC0866; transferase, g 97.2 0.0012 4.1E-08 60.7 8.7 68 168-239 57-124 (568)
128 1wao_1 Serine/threonine protei 97.2 0.0011 3.9E-08 61.4 8.6 68 168-239 40-107 (477)
129 3edt_B KLC 2, kinesin light ch 97.1 0.0083 2.8E-07 46.9 12.0 70 166-235 83-156 (283)
130 2ifu_A Gamma-SNAP; membrane fu 97.1 0.0026 8.7E-08 54.1 9.5 71 168-239 155-227 (307)
131 2gw1_A Mitochondrial precursor 97.1 0.0025 8.6E-08 55.0 9.4 75 170-248 414-491 (514)
132 2vsy_A XCC0866; transferase, g 97.1 0.0018 6.3E-08 59.4 9.1 68 168-239 91-161 (568)
133 3fp2_A TPR repeat-containing p 97.1 0.003 1E-07 55.2 9.8 67 168-238 310-376 (537)
134 1qqe_A Vesicular transport pro 97.1 0.0024 8.2E-08 53.9 8.8 72 168-239 117-191 (292)
135 1zu2_A Mitochondrial import re 97.1 0.0015 5E-08 55.0 7.4 61 184-248 62-133 (158)
136 1w3b_A UDP-N-acetylglucosamine 97.1 0.0023 7.9E-08 54.3 8.7 65 170-238 239-303 (388)
137 3nf1_A KLC 1, kinesin light ch 97.0 0.0034 1.2E-07 50.2 9.1 69 167-235 26-98 (311)
138 4gyw_A UDP-N-acetylglucosamine 97.0 0.0018 6E-08 64.6 9.1 68 168-239 77-144 (723)
139 3ro2_A PINS homolog, G-protein 97.0 0.0044 1.5E-07 49.2 9.4 68 167-234 222-291 (338)
140 3mkr_A Coatomer subunit epsilo 97.0 0.0045 1.5E-07 53.1 10.1 61 170-239 103-163 (291)
141 1wao_1 Serine/threonine protei 97.0 0.00038 1.3E-08 64.6 3.6 69 167-239 5-73 (477)
142 4a1s_A PINS, partner of inscut 97.0 0.0047 1.6E-07 52.3 10.0 64 170-233 265-330 (411)
143 2qfc_A PLCR protein; TPR, HTH, 97.0 0.0079 2.7E-07 50.3 11.2 85 169-253 197-287 (293)
144 1pc2_A Mitochondria fission pr 96.9 0.0048 1.6E-07 51.9 9.7 80 167-248 31-113 (152)
145 3nf1_A KLC 1, kinesin light ch 96.9 0.0086 2.9E-07 47.8 10.6 69 167-235 68-140 (311)
146 1ouv_A Conserved hypothetical 96.9 0.013 4.6E-07 47.4 11.7 70 168-244 38-115 (273)
147 2pzi_A Probable serine/threoni 96.9 0.0016 5.6E-08 62.8 7.3 64 170-238 469-532 (681)
148 3sf4_A G-protein-signaling mod 96.9 0.012 4E-07 49.0 11.4 66 168-233 267-334 (406)
149 2qfc_A PLCR protein; TPR, HTH, 96.9 0.0045 1.5E-07 51.8 8.9 66 168-233 155-223 (293)
150 2xpi_A Anaphase-promoting comp 96.9 0.0041 1.4E-07 55.5 9.1 68 168-239 516-583 (597)
151 3q15_A PSP28, response regulat 96.9 0.007 2.4E-07 52.1 10.2 70 166-235 220-290 (378)
152 3u3w_A Transcriptional activat 96.9 0.0057 1.9E-07 51.1 9.3 68 166-233 194-264 (293)
153 2l6j_A TPR repeat-containing p 96.8 0.00023 7.9E-09 49.4 0.5 66 168-233 38-105 (111)
154 2h6f_A Protein farnesyltransfe 96.8 0.004 1.4E-07 56.8 8.3 68 168-239 131-199 (382)
155 3ulq_A Response regulator aspa 96.7 0.014 4.7E-07 50.1 11.0 68 166-233 222-291 (383)
156 2hr2_A Hypothetical protein; a 96.7 0.0027 9.1E-08 53.4 6.4 66 168-237 57-133 (159)
157 3n71_A Histone lysine methyltr 96.6 0.019 6.3E-07 54.9 12.3 68 166-233 349-420 (490)
158 2ff4_A Probable regulatory pro 96.6 0.023 7.8E-07 52.1 12.3 75 173-251 176-257 (388)
159 3mkr_A Coatomer subunit epsilo 96.6 0.0088 3E-07 51.3 8.9 67 169-239 201-268 (291)
160 3n71_A Histone lysine methyltr 96.5 0.013 4.4E-07 56.0 10.4 69 165-233 306-378 (490)
161 2xpi_A Anaphase-promoting comp 96.5 0.0092 3.2E-07 53.2 8.8 64 170-237 375-438 (597)
162 1hz4_A MALT regulatory protein 96.5 0.023 7.7E-07 48.1 10.7 70 168-237 93-166 (373)
163 2h6f_A Protein farnesyltransfe 96.5 0.006 2E-07 55.6 7.6 69 168-240 166-234 (382)
164 4abn_A Tetratricopeptide repea 96.5 0.013 4.3E-07 53.7 9.8 72 168-240 213-292 (474)
165 1ouv_A Conserved hypothetical 96.5 0.033 1.1E-06 45.1 11.2 71 166-243 72-150 (273)
166 2ifu_A Gamma-SNAP; membrane fu 96.4 0.0078 2.7E-07 51.1 7.4 52 182-233 129-182 (307)
167 3u3w_A Transcriptional activat 96.4 0.009 3.1E-07 49.9 7.7 66 168-233 155-223 (293)
168 3q15_A PSP28, response regulat 96.4 0.0069 2.3E-07 52.2 6.9 69 166-234 180-250 (378)
169 2pzi_A Probable serine/threoni 96.3 0.0047 1.6E-07 59.6 6.2 62 172-238 505-566 (681)
170 3rjv_A Putative SEL1 repeat pr 96.3 0.02 6.7E-07 46.3 9.0 68 166-241 16-87 (212)
171 3ulq_A Response regulator aspa 96.3 0.01 3.6E-07 50.8 7.4 67 167-233 142-211 (383)
172 1hz4_A MALT regulatory protein 96.3 0.063 2.1E-06 45.4 12.0 64 170-233 16-80 (373)
173 2kat_A Uncharacterized protein 96.3 0.0094 3.2E-07 42.6 6.0 50 186-239 3-52 (115)
174 3qww_A SET and MYND domain-con 96.2 0.016 5.6E-07 54.5 9.2 68 166-233 338-409 (433)
175 3qwp_A SET and MYND domain-con 96.2 0.016 5.5E-07 54.1 8.9 65 169-233 288-356 (429)
176 1klx_A Cysteine rich protein B 96.2 0.042 1.4E-06 42.1 9.6 69 166-241 55-131 (138)
177 3qww_A SET and MYND domain-con 96.1 0.029 1E-06 52.7 10.3 66 168-233 298-367 (433)
178 3qwp_A SET and MYND domain-con 96.1 0.02 6.7E-07 53.4 8.8 68 166-233 327-398 (429)
179 3ffl_A Anaphase-promoting comp 95.9 0.022 7.5E-07 49.0 7.4 75 167-241 62-157 (167)
180 3mv2_B Coatomer subunit epsilo 95.8 0.062 2.1E-06 49.3 10.8 65 171-237 103-167 (310)
181 4f3v_A ESX-1 secretion system 95.8 0.015 5.1E-07 52.6 6.6 66 170-238 137-202 (282)
182 1na3_A Designed protein CTPR2; 95.8 0.024 8.3E-07 37.7 6.1 49 168-220 43-91 (91)
183 4g1t_A Interferon-induced prot 95.7 0.088 3E-06 45.5 10.8 77 168-244 247-372 (472)
184 3rjv_A Putative SEL1 repeat pr 95.7 0.1 3.4E-06 42.1 10.5 71 168-244 125-205 (212)
185 2ooe_A Cleavage stimulation fa 95.7 0.054 1.9E-06 49.1 9.7 65 172-241 17-81 (530)
186 4b4t_Q 26S proteasome regulato 95.7 0.045 1.6E-06 46.8 8.6 67 167-233 134-202 (434)
187 2ond_A Cleavage stimulation fa 95.4 0.065 2.2E-06 45.2 8.6 57 174-233 105-161 (308)
188 2ond_A Cleavage stimulation fa 95.4 0.095 3.2E-06 44.2 9.5 65 172-238 207-273 (308)
189 1nzn_A CGI-135 protein, fissio 95.2 0.34 1.2E-05 39.6 12.0 80 168-252 35-117 (126)
190 3ly7_A Transcriptional activat 95.2 0.071 2.4E-06 50.5 9.0 73 172-249 281-353 (372)
191 2xm6_A Protein corresponding t 95.1 0.16 5.6E-06 45.5 10.7 66 167-238 362-435 (490)
192 3bee_A Putative YFRE protein; 94.9 0.098 3.3E-06 38.9 7.3 48 168-216 43-90 (93)
193 2kc7_A BFR218_protein; tetratr 94.9 0.015 5.2E-07 40.1 2.7 56 170-237 37-92 (99)
194 4g1t_A Interferon-induced prot 94.6 0.18 6.1E-06 43.6 9.2 74 171-245 337-411 (472)
195 2xm6_A Protein corresponding t 94.5 0.34 1.2E-05 43.4 11.2 60 168-233 75-142 (490)
196 3o48_A Mitochondria fission 1 93.9 0.11 3.7E-06 43.4 6.1 79 168-252 40-121 (134)
197 2ooe_A Cleavage stimulation fa 93.3 0.32 1.1E-05 44.1 8.7 55 181-238 292-353 (530)
198 1y8m_A FIS1; mitochondria, unk 93.2 0.29 1E-05 41.2 7.7 80 167-252 38-120 (144)
199 3e4b_A ALGK; tetratricopeptide 93.0 0.021 7.3E-07 51.9 0.6 51 176-233 43-101 (452)
200 3ffl_A Anaphase-promoting comp 92.7 0.25 8.4E-06 42.5 6.7 63 170-232 22-89 (167)
201 1qsa_A Protein (soluble lytic 92.7 0.28 9.4E-06 48.7 7.9 73 171-250 289-361 (618)
202 2ff4_A Probable regulatory pro 92.4 1.1 3.6E-05 41.1 10.9 74 167-240 114-205 (388)
203 1klx_A Cysteine rich protein B 90.5 1.9 6.4E-05 32.8 8.9 63 174-243 31-97 (138)
204 3ma5_A Tetratricopeptide repea 90.4 0.44 1.5E-05 33.8 5.0 34 206-239 7-40 (100)
205 3dra_A Protein farnesyltransfe 88.3 1.3 4.6E-05 39.6 7.6 69 168-240 32-103 (306)
206 3e4b_A ALGK; tetratricopeptide 88.3 2.3 8E-05 38.5 9.3 65 172-244 217-288 (452)
207 3mv2_B Coatomer subunit epsilo 87.8 1.9 6.4E-05 39.5 8.4 22 175-196 143-164 (310)
208 3dss_A Geranylgeranyl transfer 87.6 2 6.8E-05 39.3 8.4 74 162-239 23-107 (331)
209 2cfu_A SDSA1; SDS-hydrolase, l 87.3 1.1 3.7E-05 44.5 6.9 54 168-225 449-502 (658)
210 3u64_A Protein TP_0956; tetrat 86.8 6.6 0.00023 36.4 11.5 68 182-252 218-295 (301)
211 1zu2_A Mitochondrial import re 86.5 0.4 1.4E-05 40.1 3.0 55 182-240 16-80 (158)
212 1xi4_A Clathrin heavy chain; a 85.2 2.2 7.6E-05 47.5 8.6 75 156-239 1093-1167(1630)
213 2p58_C Putative type III secre 82.9 3.3 0.00011 34.1 6.7 67 176-252 48-114 (116)
214 2xrh_A Protein HP0721; unknown 82.4 5.6 0.00019 32.0 7.7 76 75-156 6-86 (100)
215 3mkq_A Coatomer beta'-subunit; 82.3 1 3.6E-05 41.9 4.0 80 172-251 685-796 (814)
216 2uwj_G Type III export protein 81.5 3.1 0.00011 34.1 6.1 67 176-252 47-113 (115)
217 1dce_A Protein (RAB geranylger 80.7 2.8 9.5E-05 40.2 6.4 68 168-239 28-106 (567)
218 1zbp_A Hypothetical protein VP 79.5 5.7 0.00019 36.5 7.8 66 176-245 5-70 (273)
219 2ijq_A Hypothetical protein; s 79.2 8.1 0.00028 32.7 8.1 84 167-250 31-129 (161)
220 2yhe_A SEC-alkyl sulfatase; hy 78.7 0.49 1.7E-05 47.4 0.0 54 168-225 461-514 (668)
221 3q7a_A Farnesyltransferase alp 76.9 7.6 0.00026 35.9 8.0 60 175-238 95-157 (349)
222 3txn_A 26S proteasome regulato 75.3 40 0.0014 31.7 12.5 73 171-243 102-180 (394)
223 1te4_A Conserved protein MTH18 74.9 19 0.00063 26.9 8.4 59 185-251 72-130 (131)
224 3dra_A Protein farnesyltransfe 73.8 20 0.00069 31.9 9.7 66 170-239 69-143 (306)
225 1pc2_A Mitochondria fission pr 73.2 5.7 0.00019 33.1 5.5 35 168-202 71-105 (152)
226 2v5f_A Prolyl 4-hydroxylase su 72.7 10 0.00036 27.3 6.3 36 168-203 46-81 (104)
227 1dce_A Protein (RAB geranylger 70.9 16 0.00054 35.1 8.7 63 173-239 112-177 (567)
228 3ax2_A Mitochondrial import re 70.7 13 0.00044 28.0 6.4 39 166-204 15-53 (73)
229 3myv_A SUSD superfamily protei 68.9 13 0.00044 34.5 7.5 51 184-234 164-218 (454)
230 4g26_A Pentatricopeptide repea 68.8 18 0.00061 34.1 8.5 68 171-241 142-212 (501)
231 3lew_A SUSD-like carbohydrate 68.1 16 0.00056 34.4 8.1 55 183-237 173-234 (495)
232 3u64_A Protein TP_0956; tetrat 67.8 8.6 0.00029 35.7 6.0 54 184-239 179-237 (301)
233 3mv2_A Coatomer subunit alpha; 67.3 43 0.0015 31.4 10.6 82 171-253 117-254 (325)
234 1b89_A Protein (clathrin heavy 66.5 11 0.00039 36.3 6.8 22 173-194 153-174 (449)
235 3kez_A Putative sugar binding 63.7 17 0.00059 33.7 7.3 51 184-234 170-224 (461)
236 3ltm_A Alpha-REP4; protein eng 63.5 18 0.0006 28.5 6.3 61 185-253 142-202 (211)
237 3ltj_A Alpharep-4; protein eng 63.5 20 0.00068 27.9 6.6 62 185-254 137-198 (201)
238 3mcx_A SUSD superfamily protei 63.4 20 0.0007 33.3 7.7 52 184-235 176-231 (477)
239 3mkr_B Coatomer subunit alpha; 62.2 96 0.0033 28.9 11.9 82 171-253 105-245 (320)
240 1nzn_A CGI-135 protein, fissio 62.0 10 0.00034 30.9 4.7 35 168-202 74-108 (126)
241 1xi4_A Clathrin heavy chain; a 61.5 16 0.00055 40.9 7.5 52 170-233 1197-1248(1630)
242 4gns_B Protein CSD3, chitin bi 61.4 18 0.0006 37.1 7.4 66 169-242 338-403 (754)
243 2cwy_A Hypothetical protein TT 60.5 13 0.00046 28.4 5.0 59 171-231 4-64 (94)
244 2hsb_A Hypothetical UPF0332 pr 60.0 21 0.00071 27.0 5.9 33 163-195 7-39 (126)
245 2vkj_A TM1634; membrane protei 59.9 14 0.00049 29.7 5.1 32 168-199 53-84 (106)
246 4g26_A Pentatricopeptide repea 59.5 27 0.00092 32.9 7.8 60 172-235 108-169 (501)
247 2ynq_A ESSB; membrane protein, 57.9 90 0.0031 26.7 10.3 62 168-233 8-100 (161)
248 4b4t_P 26S proteasome regulato 57.3 1E+02 0.0034 28.7 11.2 76 168-243 137-218 (445)
249 1b89_A Protein (clathrin heavy 57.0 5.3 0.00018 38.6 2.6 52 170-233 124-175 (449)
250 3l9t_A Putative uncharacterize 56.8 49 0.0017 29.8 8.6 73 175-252 26-98 (240)
251 3jq1_A SUSD superfamily protei 56.3 17 0.00058 34.2 5.8 50 184-233 154-207 (481)
252 3hdx_A SUSD homolog, SUSD supe 55.9 26 0.00088 32.7 7.0 52 184-235 156-226 (478)
253 3mkq_B Coatomer subunit alpha; 55.4 33 0.0011 29.3 7.0 37 157-193 23-59 (177)
254 1om2_A Protein (mitochondrial 55.2 18 0.00062 28.5 4.9 37 167-203 19-55 (95)
255 2wpv_A GET4, UPF0363 protein Y 55.0 1.3E+02 0.0043 27.5 11.6 55 168-222 32-89 (312)
256 3snx_A SUSD homolog, putative 54.3 32 0.0011 32.2 7.3 53 184-236 160-221 (460)
257 3qnk_A Putative lipoprotein; a 54.1 34 0.0012 32.3 7.5 51 184-234 153-210 (517)
258 3jys_A SUSD superfamily protei 53.6 29 0.001 32.8 7.0 52 183-234 160-222 (499)
259 4e6h_A MRNA 3'-END-processing 53.3 17 0.00059 36.1 5.6 60 172-235 347-407 (679)
260 4e6h_A MRNA 3'-END-processing 52.1 86 0.0029 31.2 10.3 53 182-238 484-536 (679)
261 1wol_A ST0689, 122AA long cons 51.6 30 0.001 26.3 5.7 34 163-196 6-39 (122)
262 3ly7_A Transcriptional activat 50.0 53 0.0018 31.0 8.1 25 215-239 286-310 (372)
263 1ufb_A TT1696 protein; structu 49.4 28 0.00095 26.5 5.1 33 163-195 6-38 (127)
264 3ltj_A Alpharep-4; protein eng 47.7 34 0.0012 26.6 5.5 43 208-252 92-134 (201)
265 4b4t_R RPN7, 26S proteasome re 47.1 76 0.0026 29.1 8.6 76 167-243 130-208 (429)
266 3mkq_B Coatomer subunit alpha; 45.1 47 0.0016 28.3 6.3 47 177-232 14-60 (177)
267 2vgl_A Adaptor protein complex 45.0 25 0.00086 34.0 5.2 73 179-255 502-590 (621)
268 3q7a_A Farnesyltransferase alp 44.4 65 0.0022 29.7 7.7 59 177-239 62-122 (349)
269 1ya0_A SMG-7 transcript varian 43.5 1.7E+02 0.0057 28.3 10.6 83 169-255 153-237 (497)
270 3l8r_A PTCA, putative PTS syst 43.2 92 0.0031 25.3 7.5 63 151-217 20-82 (120)
271 4fx5_A VON willebrand factor t 41.7 47 0.0016 31.4 6.4 32 165-196 379-410 (464)
272 3ltm_A Alpha-REP4; protein eng 40.9 51 0.0017 25.8 5.6 43 208-252 128-170 (211)
273 1w63_A Adapter-related protein 40.8 51 0.0018 31.5 6.6 66 187-257 510-581 (618)
274 3t5x_A PCI domain-containing p 40.4 1.1E+02 0.0036 25.9 7.8 57 166-222 12-69 (203)
275 3i4g_A SUSD-like carbohydrate 39.5 71 0.0024 30.4 7.3 51 184-234 167-226 (528)
276 1o3u_A Conserved hypothetical 39.0 45 0.0015 26.1 5.0 30 166-195 14-43 (135)
277 4b4t_P 26S proteasome regulato 38.5 1.1E+02 0.0036 28.5 8.2 89 168-256 177-273 (445)
278 4fm3_A Uncharacterized hypothe 38.3 51 0.0018 26.1 5.1 33 164-196 30-62 (98)
279 2w2u_A Hypothetical P60 katani 38.3 44 0.0015 25.0 4.5 30 167-196 18-47 (83)
280 3ckc_A SUSD; TPR repeat, carbo 37.7 78 0.0027 29.2 7.1 51 184-234 169-231 (527)
281 2v6y_A AAA family ATPase, P60 37.6 46 0.0016 24.7 4.5 31 166-196 9-39 (83)
282 1te4_A Conserved protein MTH18 37.4 54 0.0018 24.3 5.0 59 188-254 44-102 (131)
283 2qf9_A Putative secreted prote 36.7 34 0.0012 28.7 4.1 32 221-252 123-154 (179)
284 3lpz_A GET4 (YOR164C homolog); 34.2 2.9E+02 0.0099 25.7 11.3 43 178-220 45-89 (336)
285 1oyz_A Hypothetical protein YI 33.9 1.2E+02 0.0042 24.7 7.1 46 207-253 174-220 (280)
286 2pmr_A Uncharacterized protein 33.9 1.6E+02 0.0055 22.6 7.5 48 144-191 10-62 (87)
287 3ihv_A SUSD homolog; NP_813570 33.0 78 0.0027 29.7 6.4 51 184-234 163-232 (535)
288 3spa_A Mtrpol, DNA-directed RN 32.7 42 0.0015 36.4 4.9 68 164-235 122-194 (1134)
289 3o48_A Mitochondria fission 1 32.5 48 0.0016 27.4 4.3 35 168-202 78-112 (134)
290 1y8m_A FIS1; mitochondria, unk 32.1 54 0.0018 27.4 4.6 34 169-202 78-111 (144)
291 1wcr_A PTS system, N, N'-diace 31.9 1.7E+02 0.0058 22.9 7.2 43 154-196 4-46 (103)
292 3jq0_A SUSD superfamily protei 31.9 37 0.0013 31.9 3.9 51 184-234 153-219 (493)
293 3mkq_A Coatomer beta'-subunit; 31.8 85 0.0029 29.1 6.3 50 175-233 659-708 (814)
294 2vgl_B AP-2 complex subunit be 31.7 64 0.0022 30.4 5.6 74 178-254 449-532 (591)
295 4a5x_A MITD1, MIT domain-conta 31.3 70 0.0024 24.0 4.7 29 168-196 16-44 (86)
296 1wy6_A Hypothetical protein ST 31.0 78 0.0027 27.5 5.4 45 189-233 108-152 (172)
297 4ffb_C Protein STU2; tubulin f 30.8 98 0.0034 26.0 6.1 65 185-252 138-210 (278)
298 3o10_A Sacsin; all-helical dom 30.6 55 0.0019 26.2 4.3 34 162-195 10-43 (141)
299 2v6x_A Vacuolar protein sortin 29.4 87 0.003 22.8 4.9 29 168-196 13-41 (85)
300 3vkg_A Dynein heavy chain, cyt 29.1 3.3E+02 0.011 32.7 11.7 27 150-176 1981-2007(3245)
301 2v6y_A AAA family ATPase, P60 28.8 1E+02 0.0035 22.7 5.2 15 216-230 21-35 (83)
302 3txn_A 26S proteasome regulato 28.7 3E+02 0.01 25.7 9.5 91 166-257 178-271 (394)
303 1oyz_A Hypothetical protein YI 28.6 1.2E+02 0.0041 24.8 6.1 61 185-253 127-187 (280)
304 1lq7_A Alpha3W; three helix bu 28.2 1.6E+02 0.0053 21.7 5.9 24 115-138 27-50 (67)
305 2e2a_A Protein (enzyme IIA); h 27.5 2.2E+02 0.0077 22.3 7.3 53 164-220 16-68 (105)
306 2w2u_A Hypothetical P60 katani 27.4 1.1E+02 0.0038 22.7 5.2 15 216-230 29-43 (83)
307 1zpy_A Hypothetical protein NE 27.0 70 0.0024 25.2 4.1 37 212-248 20-56 (95)
308 3otn_A SUSD superfamily protei 26.8 65 0.0022 30.0 4.6 51 184-234 160-225 (482)
309 2cpt_A SKD1 protein, vacuolar 26.7 1.6E+02 0.0056 23.2 6.4 50 184-253 15-77 (117)
310 3dss_A Geranylgeranyl transfer 25.4 3.8E+02 0.013 24.2 17.1 53 183-239 125-178 (331)
311 1wjt_A Transcription elongatio 25.1 92 0.0031 24.3 4.5 59 179-253 25-83 (103)
312 1wfd_A Hypothetical protein 15 24.9 78 0.0027 23.9 4.0 30 167-196 14-43 (93)
313 3nqp_A SUSD superfamily protei 24.7 88 0.003 29.4 5.1 51 184-234 167-241 (514)
314 4ady_A RPN2, 26S proteasome re 24.3 95 0.0032 33.0 5.7 77 172-251 528-604 (963)
315 4b4t_R RPN7, 26S proteasome re 24.1 3.4E+02 0.012 24.7 8.9 76 169-244 169-246 (429)
316 1wfd_A Hypothetical protein 15 23.1 1.5E+02 0.005 22.3 5.2 12 184-195 12-23 (93)
317 2i9c_A Hypothetical protein RP 23.1 2.3E+02 0.008 23.0 6.7 53 177-248 27-80 (123)
318 3eab_A Spastin; spastin, MIT, 23.0 30 0.001 27.0 1.4 21 171-191 19-42 (89)
319 3l22_A SUSD superfamily protei 22.8 44 0.0015 30.8 2.6 52 184-237 172-231 (441)
320 3ax2_A Mitochondrial import re 22.6 1E+02 0.0036 22.9 4.2 31 209-240 20-51 (73)
321 2crb_A Nuclear receptor bindin 22.3 86 0.0029 25.0 3.8 24 173-196 20-43 (97)
322 1om2_A Protein (mitochondrial 21.8 88 0.003 24.5 3.8 38 209-253 23-61 (95)
323 3vp9_A General transcriptional 20.7 1.4E+02 0.0048 23.4 4.7 48 100-157 40-87 (92)
324 3iqc_A FLIS, flagellar protein 20.7 1.5E+02 0.0052 23.7 5.1 53 166-218 34-91 (131)
325 2jpu_A ORF C02003 protein; sol 20.5 1.5E+02 0.005 24.3 5.0 31 166-196 5-35 (129)
326 4afl_A P29ING4, inhibitor of g 20.5 2.8E+02 0.0094 20.8 8.3 34 145-178 62-95 (104)
327 2wxu_A Phospholipase C; cytoly 20.1 1.1E+02 0.0039 29.0 4.9 32 167-198 97-128 (370)
No 1
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.83 E-value=4.2e-08 Score=78.66 Aligned_cols=82 Identities=7% Similarity=0.010 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq 247 (276)
+...+..|...+..|+|.+||..|++++...|.+.. +.+.|+.+|...|+.++|+..|++....+|++.+++.|+.
T Consensus 70 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~----~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~~~~~A~~ 145 (151)
T 3gyz_A 70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT----PVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQS 145 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 455677899999999999999999999998876654 9999999999999999999999999989999999999999
Q ss_pred HHHhhc
Q 023865 248 LRYILQ 253 (276)
Q Consensus 248 LLyILE 253 (276)
+|..|+
T Consensus 146 ll~~l~ 151 (151)
T 3gyz_A 146 YLDAIQ 151 (151)
T ss_dssp HHHHHC
T ss_pred HHHhhC
Confidence 999874
No 2
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.78 E-value=1.2e-07 Score=68.18 Aligned_cols=85 Identities=12% Similarity=0.156 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL 248 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqL 248 (276)
...+..|...+..|+|..|+..|+.++...|.+ +....+.++++.+|...|+.++|+..|+.+...+|+......|...
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPTH-DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 457888999999999999999999999976644 3346799999999999999999999999999999999999998888
Q ss_pred HHhhcC
Q 023865 249 RYILQA 254 (276)
Q Consensus 249 LyILEA 254 (276)
|..|..
T Consensus 119 l~~l~~ 124 (129)
T 2xev_A 119 LQSIRL 124 (129)
T ss_dssp HHHHC-
T ss_pred HHHHHh
Confidence 777653
No 3
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.59 E-value=1.2e-06 Score=61.18 Aligned_cols=69 Identities=17% Similarity=0.141 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
.+...+..|...+..|+|..|++.|++++...|.+ ..+.+.++.+|...|+.++|+..|++....+|+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN----PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 35567889999999999999999999999987655 4689999999999999999999999999788874
No 4
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.53 E-value=6.2e-07 Score=72.75 Aligned_cols=73 Identities=19% Similarity=0.193 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI 241 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV 241 (276)
+...|..|...+.+|+|.+||..|+.++...| .++....++++|+.+|...|+.++||..|+++++.+|+...
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~ 76 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 76 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 56789999999999999999999999998655 45566789999999999999999999999999989998653
No 5
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.49 E-value=1.5e-06 Score=62.52 Aligned_cols=69 Identities=20% Similarity=0.365 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
..|..|...+..|+|..|+..|+.++...|. +.....+.++++.+|...|+.++|+..|+.+...+|+.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH 72 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence 4688999999999999999999999987664 45556899999999999999999999999999888885
No 6
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.48 E-value=6.9e-07 Score=64.78 Aligned_cols=81 Identities=19% Similarity=0.160 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES---NHPSKNIRRQ 244 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~---~HPd~qVRqQ 244 (276)
+...+..|...+..|+|.+|+.+|++++...|.+.. +.+.|+.+|...|+.++|+..|++... .+++......
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVG----TYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 345788999999999999999999999998776554 999999999999999999999998763 3566666666
Q ss_pred HHHHHHhh
Q 023865 245 AADLRYIL 252 (276)
Q Consensus 245 AKqLLyIL 252 (276)
...+|..+
T Consensus 83 l~~~l~~~ 90 (100)
T 3ma5_A 83 LQDAKLKA 90 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 66666544
No 7
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.44 E-value=2.2e-06 Score=66.62 Aligned_cols=82 Identities=10% Similarity=0.056 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----HHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS----KNIRR 243 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd----~qVRq 243 (276)
+...+..|...+..|+|..|+..|+.++...|.+. .+.+.|+.+|...|+.++|+..|+......|+ ..++.
T Consensus 55 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 130 (148)
T 2vgx_A 55 SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP----RFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELST 130 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc----hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHH
Confidence 44567889999999999999999999999877654 48999999999999999999999999877777 67888
Q ss_pred HHHHHHHhhc
Q 023865 244 QAADLRYILQ 253 (276)
Q Consensus 244 QAKqLLyILE 253 (276)
.|..+|..|.
T Consensus 131 ~~~~~l~~l~ 140 (148)
T 2vgx_A 131 RVSSMLEAIK 140 (148)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 8888887764
No 8
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.44 E-value=1.4e-06 Score=63.47 Aligned_cols=67 Identities=15% Similarity=0.078 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
+...+..|...+.+|+|.+|+..|++++...|.+. .+.+.++.+|...|+.++|+..|++.+..+|+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 70 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA----RGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 70 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 34455566666666666666666666666544332 35666666666666666666666665545554
No 9
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.43 E-value=1.3e-06 Score=66.46 Aligned_cols=65 Identities=12% Similarity=0.026 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
...+.|...|.+|+|.+||+.|++++...|.+. .+.+.++.+|...|+.++||..|++.++-.|+
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 79 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA----ILYSNRAACLTKLMEFQRALDDCDTCIRLDSK 79 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence 344455555555555555555555555444332 24555555555555555555555554434443
No 10
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.43 E-value=2.1e-06 Score=70.00 Aligned_cols=72 Identities=25% Similarity=0.343 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
.+...|..|...+.+|+|.+||..|++++...| .++....+.++|+.+|...|+.++|+..|+.+++.+|+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~ 85 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID 85 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC
Confidence 367789999999999999999999999999665 455567899999999999999999999999999888854
No 11
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.42 E-value=3.2e-06 Score=59.27 Aligned_cols=86 Identities=15% Similarity=0.214 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCch---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG---GEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ 244 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lG---GEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ 244 (276)
+...+..|...+..|+|..|+.+|+.++...+.+.... ..+.+.++.+|...|+.++|+..|+.....+|++.+...
T Consensus 38 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 117 (131)
T 1elr_A 38 MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK 117 (131)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHH
Confidence 34567889999999999999999999998776432221 678999999999999999999999999988999999888
Q ss_pred HHHHHHhhc
Q 023865 245 AADLRYILQ 253 (276)
Q Consensus 245 AKqLLyILE 253 (276)
...+...+.
T Consensus 118 l~~~~~~~~ 126 (131)
T 1elr_A 118 CQQAEKILK 126 (131)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888776654
No 12
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.42 E-value=1.9e-06 Score=65.10 Aligned_cols=82 Identities=10% Similarity=0.041 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC----CHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP----SKNIRR 243 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP----d~qVRq 243 (276)
+...+..|...+..|+|..|+..|+.++...|.+.. +.+.|+.+|...|+.++|+..|+.....+| ...++.
T Consensus 52 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 52 ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR----FPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 445677899999999999999999999998776544 899999999999999999999999886777 456777
Q ss_pred HHHHHHHhhc
Q 023865 244 QAADLRYILQ 253 (276)
Q Consensus 244 QAKqLLyILE 253 (276)
.+..+|..|.
T Consensus 128 ~~~~~l~~l~ 137 (142)
T 2xcb_A 128 RAGAMLEAVT 137 (142)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776653
No 13
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.39 E-value=4.2e-06 Score=62.28 Aligned_cols=78 Identities=23% Similarity=0.230 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC---CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP---TFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ 244 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~n---S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ 244 (276)
+..-|..|..+|.+|+|.+||.+|+.|+...+.. ...-..+...|+.+|...|+.++|+.+++.+.+-.|+......
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4567899999999999999999999999876433 2334588999999999999999999999999878887655433
Q ss_pred H
Q 023865 245 A 245 (276)
Q Consensus 245 A 245 (276)
.
T Consensus 85 n 85 (104)
T 2v5f_A 85 N 85 (104)
T ss_dssp H
T ss_pred h
Confidence 3
No 14
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.38 E-value=3.4e-06 Score=68.76 Aligned_cols=84 Identities=21% Similarity=0.252 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHhCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN----------NRHADCIALYKQLESNHP 237 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~----------Gq~EkAIALCQ~L~~~HP 237 (276)
++..|..|...+.+|+|..||..|+.++...| +++...++.++|+.+|... |+.++|+..|++++..+|
T Consensus 148 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 148 ARKQYEAARLYERRELYEAAAVTYEAVFDAYP-DTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 34478999999999999999999999998665 4555678999999999988 888999999999999999
Q ss_pred CHHHHHHHHHHHHhh
Q 023865 238 SKNIRRQAADLRYIL 252 (276)
Q Consensus 238 d~qVRqQAKqLLyIL 252 (276)
+......|..+|..+
T Consensus 227 ~~~~~~~a~~~l~~~ 241 (261)
T 3qky_A 227 DSPLLRTAEELYTRA 241 (261)
T ss_dssp TCTHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHH
Confidence 998888888776644
No 15
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.32 E-value=6.1e-06 Score=60.33 Aligned_cols=79 Identities=16% Similarity=0.249 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH-HHHHHH
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK-NIRRQA 245 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~-qVRqQA 245 (276)
.+...+..|...+..|+|.+|+..|++++...|.+ ..+.+.|+.+|...|+.++|+.+|++....+|+. .+....
T Consensus 26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 101 (117)
T 3k9i_A 26 LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH----QALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYK 101 (117)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 35567889999999999999999999999987766 4699999999999999999999999988677754 454444
Q ss_pred HHHH
Q 023865 246 ADLR 249 (276)
Q Consensus 246 KqLL 249 (276)
+.+.
T Consensus 102 ~ai~ 105 (117)
T 3k9i_A 102 QAIL 105 (117)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 16
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.32 E-value=5.6e-06 Score=62.56 Aligned_cols=79 Identities=8% Similarity=0.117 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCC---chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF---FGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ 244 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~---lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ 244 (276)
+...+..|...+..|+|..||+.|++++...|.+.. .-+.+.+.|+.+|.+.|+.++||..|++-...+|++++.+.
T Consensus 42 ~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~ 121 (127)
T 4gcn_A 42 ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHH
Confidence 445667788888888888888888888877664433 23567777888888888888888888886667888887665
Q ss_pred HH
Q 023865 245 AA 246 (276)
Q Consensus 245 AK 246 (276)
-+
T Consensus 122 l~ 123 (127)
T 4gcn_A 122 VK 123 (127)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 17
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.28 E-value=5.1e-06 Score=58.08 Aligned_cols=66 Identities=15% Similarity=0.165 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGE-IQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGE-AQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (276)
.|+.|...+..|+|..|+..|+.++...|.+ .. +.+.++.+|...|+.++|+..|++....+|+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 69 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVG----KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSST----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 4788999999999999999999999976544 35 899999999999999999999999998888753
No 18
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.27 E-value=7.6e-06 Score=55.30 Aligned_cols=68 Identities=28% Similarity=0.440 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
+...+..|...+..|+|.+|+.+|++++...|.+ ..+.+.|+.+|...|+.++|+..|++....+|+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 76 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 4567888999999999999999999999976654 4689999999999999999999999998777754
No 19
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.27 E-value=5.2e-06 Score=63.51 Aligned_cols=69 Identities=13% Similarity=-0.009 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (276)
+...+..|...+..|+|..|+..|+.++...|.+ ..+.+.|+.+|...|+.++|+..|++....+|+..
T Consensus 45 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 113 (164)
T 3sz7_A 45 PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY----SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG 113 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch
Confidence 4567788999999999999999999999977655 46899999999999999999999998887777653
No 20
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.26 E-value=4.8e-06 Score=57.31 Aligned_cols=63 Identities=21% Similarity=0.085 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (276)
.+..|...+..|+|..|+..|+.++...|.+ ..+.+.++.+|...|+.++|+.+|+.....+|
T Consensus 41 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 41 YSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW----GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 3444555555555555555555555443321 23455555555555555555555555443333
No 21
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.24 E-value=6.4e-06 Score=62.16 Aligned_cols=68 Identities=10% Similarity=0.120 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
+...|..|...+.+|+|.+|+.+|+.++...|.+. .+.+.|+.+|...|+.++|+..|+..+...|+.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA----RYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 45678899999999999999999999999776554 489999999999999999999999998777753
No 22
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.24 E-value=3.5e-06 Score=63.68 Aligned_cols=67 Identities=18% Similarity=0.224 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (276)
.|....+.|...|.+|+|.+||++|++++...|.+ ..+...++.+|...|+.++||..|++.+.-.|
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~----~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~ 73 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN----ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc
Confidence 34455678999999999999999999999987765 35889999999999999999999998874433
No 23
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.23 E-value=5.8e-06 Score=63.12 Aligned_cols=77 Identities=19% Similarity=0.064 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH--HHHHHHH
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK--NIRRQAA 246 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~--qVRqQAK 246 (276)
...+..|...+..|+|..|+..++.++...|.+. .+.+.++.+|...|+.++|+..|++.....|+. .++..-.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~----~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~ 139 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNE----KALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMK 139 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcch----HHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4566778888888999999999999888765543 588899999999999999999998888777764 3444444
Q ss_pred HHH
Q 023865 247 DLR 249 (276)
Q Consensus 247 qLL 249 (276)
.+.
T Consensus 140 ~~~ 142 (162)
T 3rkv_A 140 IVT 142 (162)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 24
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.22 E-value=4.3e-06 Score=64.02 Aligned_cols=71 Identities=21% Similarity=0.265 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (276)
+++...+..|...+.+|+|..||+.|+++++..|.+. .+.+.|+.+|...|+.++|+..|+.+...+|+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~ 73 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV----ETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA 73 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH
Confidence 4566788999999999999999999999999877653 5999999999999999999999999987887654
No 25
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.21 E-value=6.9e-06 Score=65.73 Aligned_cols=68 Identities=15% Similarity=0.067 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
.+...|..|...+.+|+|.+|+.+|++++...|.+.. +.+.|+.+|...|+.++||..|++.+...|+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~----~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVD----YIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 3557899999999999999999999999997776544 8999999999999999999999999988887
No 26
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.20 E-value=6.7e-06 Score=61.83 Aligned_cols=62 Identities=16% Similarity=0.101 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (276)
Q Consensus 172 yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (276)
|..|...+..|+|.+|+..|+.++...|.+. .+.+.|+.+|...|+.++|+..|++.....|
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 82 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPERE----EAWRSLGLTQAENEKDGLAIIALNHARMLDP 82 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4445555555555555555555555444332 2555555555555555555555555554444
No 27
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.20 E-value=5.4e-06 Score=59.86 Aligned_cols=81 Identities=16% Similarity=0.207 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP---SKNIRRQ 244 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP---d~qVRqQ 244 (276)
+...+..|...+..|+|.+|+..|+.++...|.+ ..+.+.|+.+|...|+.++|+..|++.....| +......
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY----SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKE 94 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHH
Confidence 4467888999999999999999999999977654 45899999999999999999999999875444 4444444
Q ss_pred HHHHHHhh
Q 023865 245 AADLRYIL 252 (276)
Q Consensus 245 AKqLLyIL 252 (276)
...+|..|
T Consensus 95 l~~~l~~l 102 (115)
T 2kat_A 95 LQVFLRRL 102 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44444433
No 28
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.19 E-value=9.3e-06 Score=62.78 Aligned_cols=76 Identities=16% Similarity=0.282 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHH
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQA 245 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVRqQA 245 (276)
.....|..|...+..|+|..|+++|++++...|.+. .+.+.|+.+|...|+.++|+..|++.++.+|+ +.+.-.-
T Consensus 30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 105 (150)
T 4ga2_A 30 KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP----KAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKI 105 (150)
T ss_dssp HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 344567888899999999999999999998766553 58999999999999999999999998877885 4444333
Q ss_pred H
Q 023865 246 A 246 (276)
Q Consensus 246 K 246 (276)
-
T Consensus 106 a 106 (150)
T 4ga2_A 106 A 106 (150)
T ss_dssp H
T ss_pred H
Confidence 3
No 29
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.19 E-value=9.1e-06 Score=63.08 Aligned_cols=69 Identities=14% Similarity=0.129 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
.+...+..|...+.+|+|..|+..|+.++...|.+. .+.+.|+.+|...|+.++|+..|+..+...|+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 88 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS----RFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 355678899999999999999999999999777654 488999999999999999999999998777753
No 30
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.18 E-value=1.1e-05 Score=58.51 Aligned_cols=66 Identities=12% Similarity=-0.046 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (276)
+...+..|...+..|+|..|+..|+.++...|.+ ..+.+.|+.+|...|+.++|+..|+......|
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 43 AVYYTNRALCYLKMQQPEQALADCRRALELDGQS----VKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 3445556666666666666666666666654432 24666666666666666666666666654444
No 31
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.15 E-value=3.3e-05 Score=56.83 Aligned_cols=69 Identities=13% Similarity=0.014 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (276)
+...+..|...+..|+|..|+.+|++++...|.+ ..+.+.++.+|...|+.++|+.+|++....+|+..
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~ 115 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY----IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 115 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence 4556777888899999999999999999876544 35889999999999999999999999887777543
No 32
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=3.5e-05 Score=55.66 Aligned_cols=67 Identities=15% Similarity=-0.039 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
....+..|...+..|+|.+|+..|+.++...+.+ ..+.+.++.+|...|+.++|+.+|++....+|+
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD----VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 5566777888888888888888888888765543 457788888888888888888888887766665
No 33
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.14 E-value=1.9e-05 Score=57.39 Aligned_cols=65 Identities=15% Similarity=-0.038 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH 236 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H 236 (276)
+...+..|...+..|+|..|+..|++++...|.+ ..+.+.++.+|...|+.++|+..|++....+
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 38 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF----VRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 4567888999999999999999999999987665 4599999999999999999999999988677
No 34
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.13 E-value=1.8e-05 Score=55.37 Aligned_cols=68 Identities=21% Similarity=0.176 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
++...+..|...+..|+|..|+.+|+.++...|.+ ..+.+.++.+|...|+.++|+.+|+.....+|+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN----MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc
Confidence 46678899999999999999999999999976554 468999999999999999999999998866553
No 35
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.13 E-value=4.7e-06 Score=67.15 Aligned_cols=69 Identities=23% Similarity=0.439 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHH----------------HHHHHHHcCChHHHHHHHH
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIW----------------LAMAYEANNRHADCIALYK 230 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmw----------------LAtAYqa~Gq~EkAIALCQ 230 (276)
.+...+..|..++..|+|.+|+..|++++...|.+ ..+.++ |+.+|...|+.++|+..|+
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 78 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR----TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK 78 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH----HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 35668899999999999999999999999966543 458889 9999999999999999999
Q ss_pred HHHHhCCCH
Q 023865 231 QLESNHPSK 239 (276)
Q Consensus 231 ~L~~~HPd~ 239 (276)
+....+|+.
T Consensus 79 ~al~~~p~~ 87 (208)
T 3urz_A 79 ELLQKAPNN 87 (208)
T ss_dssp HHHHHCTTC
T ss_pred HHHHHCCCC
Confidence 999888864
No 36
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.13 E-value=2.4e-05 Score=59.34 Aligned_cols=68 Identities=15% Similarity=0.042 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
+...+..|...+..|+|..||+.|++++...|.+. .+.+.|+.+|...|+.++|+..|++..+-.|+.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 47 AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI----KGYIRKAACLVAMREWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC
Confidence 55678889999999999999999999999876654 599999999999999999999999999888864
No 37
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.12 E-value=1.7e-05 Score=54.29 Aligned_cols=68 Identities=12% Similarity=0.136 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCH
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN-NRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~-Gq~EkAIALCQ~L~~~HPd~ 239 (276)
..+..|...+..|+|..|+++|++++...+. ..-..+.+.|+.+|... |+.++|+..++.+...+|++
T Consensus 42 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 42 YWLMKGKALYNLERYEEAVDCYNYVINVIED--EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC--TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 4567788888888888888888888886554 11246888888888888 88888888888888777753
No 38
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=7.1e-05 Score=54.03 Aligned_cols=71 Identities=13% Similarity=0.040 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
+...+..|...+.+|+|..|+.+|+.++...+.+ ..-..+.+.++.+|...|+.++|+.+|++....+|+.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 98 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATP-QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc-hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC
Confidence 4567889999999999999999999999876532 2235789999999999999999999999998788853
No 39
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.10 E-value=4.6e-05 Score=53.05 Aligned_cols=67 Identities=22% Similarity=0.263 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
+...+..|...+..|+|..|+..|+.++...+.+ ..+.+.++.+|...|+.++|+.+++.....+|+
T Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 112 (131)
T 2vyi_A 46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY----SKAYGRMGLALSSLNKHVEAVAYYKKALELDPD 112 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc
Confidence 3455666777777888888888888877765443 357777777888888888888887777766664
No 40
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.08 E-value=2.6e-05 Score=53.32 Aligned_cols=64 Identities=17% Similarity=0.267 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
.+..|...+.+|+|.+|+..|++++...+.+ ..+.+.++.+|...|+.++|+.+|++....+|+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEE----SKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 4567889999999999999999999976654 358999999999999999999999999977776
No 41
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.07 E-value=6.8e-05 Score=68.75 Aligned_cols=71 Identities=17% Similarity=0.066 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHH
Q 023865 168 AQLMFELGQKAYGKGMY-GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIR 242 (276)
Q Consensus 168 ae~~yeaG~aALerGdY-~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVR 242 (276)
+...+..|...+..|+| .+|+++|++++...|.+ ..+.+.|+.+|...|+.++|+.+|++.....|++.+.
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 173 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL----VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSL 173 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHH
Confidence 77889999999999999 99999999999977654 4599999999999999999999999999888885433
No 42
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.07 E-value=2.5e-05 Score=55.21 Aligned_cols=68 Identities=16% Similarity=0.012 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
....+..|...+..|+|..|+.+|+.++...+.+ ..+.+.++.+|...|+.++|+.+|++....+|+.
T Consensus 50 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 117 (133)
T 2lni_A 50 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF----IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC 117 (133)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc
Confidence 4556667777777888888888888877765442 3577777888888888888888887777566643
No 43
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.06 E-value=3.8e-05 Score=60.38 Aligned_cols=80 Identities=16% Similarity=0.010 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHH
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQAAD 247 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVRqQAKq 247 (276)
...+..|...+..|+|..|+.+|+.++...| .-..+.+.++.+|...|+.++|+..|++....+|+ +.+...-..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 164 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK----NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 4556677778888888888888888887532 23578888888888888888888888887767764 445544444
Q ss_pred HHHhh
Q 023865 248 LRYIL 252 (276)
Q Consensus 248 LLyIL 252 (276)
++..+
T Consensus 165 ~~~~~ 169 (198)
T 2fbn_A 165 CVNKL 169 (198)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 44
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.06 E-value=8.1e-06 Score=61.37 Aligned_cols=67 Identities=18% Similarity=0.166 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
+...+..|...+..|+|.+|+..|++++...|.+. .+.+.|+.+|...|+.++|+..|++....+|+
T Consensus 51 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 51 EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI----AVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 55678899999999999999999999999877654 49999999999999999999999999866665
No 45
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.04 E-value=3.8e-05 Score=58.51 Aligned_cols=47 Identities=15% Similarity=0.053 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYE 217 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYq 217 (276)
+...|..|...+..|+|..|+..|++++...|.+.. .++..|..+..
T Consensus 97 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~~~l~~~~~ 143 (162)
T 3rkv_A 97 EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAAS---VVAREMKIVTE 143 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHH---HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHH
Confidence 567888999999999999999999999998765542 24544544443
No 46
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.03 E-value=0.0001 Score=51.26 Aligned_cols=70 Identities=17% Similarity=0.141 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
..+...+..|...+..|+|..|+.+|++++...+.+ ..+.+.++.+|...|+.++|+.+|+.....+|+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 79 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN----AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY 79 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC
Confidence 346678899999999999999999999999976654 4689999999999999999999999998788863
No 47
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.01 E-value=4.7e-05 Score=52.61 Aligned_cols=68 Identities=28% Similarity=0.440 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
....+..|...+..|+|..|+.+|+.++...+.+ ..+.+.|+.+|...|+.++|+.+|+.....+|+.
T Consensus 43 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 110 (125)
T 1na0_A 43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 3445666777778888888888888877765443 3467777888888888888888888777666653
No 48
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.00 E-value=3.6e-05 Score=52.86 Aligned_cols=68 Identities=16% Similarity=0.120 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
.+...+..|...+..|+|..|+.+|+.++...|.+ ..+.+.++.+|...|+.++|+.+|++....+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN----HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence 45678899999999999999999999999977654 458999999999999999999999999878886
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.00 E-value=1.8e-05 Score=60.48 Aligned_cols=67 Identities=21% Similarity=0.276 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
....+..|...+..|+|.+||+.|++++...|.+ ..+.+.|+.+|...|+.++|+..|++..+.+|+
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 107 ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF----IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh----hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 4456778999999999999999999999977655 359999999999999999999999998855553
No 50
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.98 E-value=2.7e-05 Score=59.46 Aligned_cols=69 Identities=22% Similarity=0.246 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
..+...+..|...+.+|+|..|+.+|++++...|.+ ..+.+.|+.+|...|+.++|+..|++.+..+|+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 77 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN----PIYLSNRAAAYSASGQHEKAAEDAELATVVDPK 77 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 356778999999999999999999999999987765 459999999999999999999999999988887
No 51
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.98 E-value=3.3e-05 Score=61.24 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
..+..|...+..|+|..|+.+|++++...|. ...+.+.|+.+|...|+.++|+..|++..+.+|+.
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 109 (228)
T 4i17_A 44 TAYNCGVCADNIKKYKEAADYFDIAIKKNYN----LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGN 109 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc----hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence 4455566666666666666666666654333 23466666666666666666666666666556553
No 52
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.96 E-value=8.1e-05 Score=58.51 Aligned_cols=62 Identities=15% Similarity=0.106 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHH-HHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCI-ALYKQLE 233 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAI-ALCQ~L~ 233 (276)
....+..|...+..|+|..|+.+|+.++...|.+ ..++..|+.++...|+.+++. ..|+.+-
T Consensus 122 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 122 VKALYKLGVANMYFGFLEEAKENLYKAASLNPNN----LDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888999999999999999999999977655 359999999999999998888 6666665
No 53
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.96 E-value=4.2e-05 Score=55.34 Aligned_cols=68 Identities=18% Similarity=0.101 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
+...+..|...+..|+|..|+..|..++...|.+ ..+.+.++.+|...|+.++|+..|+.....+|+.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 76 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALELDGQS 76 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh
Confidence 5678899999999999999999999999987654 3599999999999999999999999999788873
No 54
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.95 E-value=4.1e-05 Score=61.99 Aligned_cols=77 Identities=12% Similarity=0.097 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHH------------------cCChHHHHHHHH
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA------------------NNRHADCIALYK 230 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa------------------~Gq~EkAIALCQ 230 (276)
...|..|...+..|+|..||..|+.++...|.+.. ...+.++++.+|.. .|+.++|+..|+
T Consensus 42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~-~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 120 (225)
T 2yhc_A 42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFS 120 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc-HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHH
Confidence 45788899999999999999999999997776543 45688999999876 689999999999
Q ss_pred HHHHhCCCHHHHHHHH
Q 023865 231 QLESNHPSKNIRRQAA 246 (276)
Q Consensus 231 ~L~~~HPd~qVRqQAK 246 (276)
++++.+|+......|.
T Consensus 121 ~~l~~~P~~~~a~~a~ 136 (225)
T 2yhc_A 121 KLVRGYPNSQYTTDAT 136 (225)
T ss_dssp HHHTTCTTCTTHHHHH
T ss_pred HHHHHCcCChhHHHHH
Confidence 9999999976555444
No 55
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.95 E-value=3.5e-05 Score=62.06 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
.+..|...+..|+|..|+..|++++...|.+. .+.+.|+.+|...|+.++|+..|++.+..+|+.
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 121 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKAPNNV----DCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 45589999999999999999999999877654 599999999999999999999999999889874
No 56
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.92 E-value=0.00017 Score=49.80 Aligned_cols=68 Identities=28% Similarity=0.440 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
+...+..|...+..|+|..|+++|+.++...+.+ ..+.+.++.+|...|+.++|+.+|+.....+|+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 76 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc
Confidence 4557888999999999999999999999876543 3589999999999999999999999998777753
No 57
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.90 E-value=7.1e-05 Score=55.04 Aligned_cols=67 Identities=13% Similarity=0.069 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (276)
.+...+..|...+..|+|..|+.+|+.++...+.+ ..+.+.++.+|...|+.++|+.+|++....+|
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~ 78 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELDK 78 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 34445555555555555555555555555544332 23555555555555555555555555554444
No 58
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.90 E-value=3.8e-05 Score=62.21 Aligned_cols=67 Identities=27% Similarity=0.320 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
...+..|...+.+|+|.+|+..|++++...|.+. .+.+.|+.+|...|+.++|+..|++.+...|+.
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 72 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDP----EALYWLARTQLKLGLVNPALENGKTLVARTPRY 72 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 4567889999999999999999999999766553 599999999999999999999999999888874
No 59
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.89 E-value=0.0001 Score=52.05 Aligned_cols=67 Identities=16% Similarity=0.209 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
....+..|...+.+|+|..|+..|++++...+.+ ..+.+.++.+|...|+.++|+.+|++..+.+|+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 82 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT 82 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC----HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 4567888999999999999999999999866554 569999999999999999999999999877776
No 60
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.88 E-value=7e-05 Score=64.67 Aligned_cols=70 Identities=14% Similarity=0.158 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
...++..+..|..++.+|+|..|+..|+.++...| + ..+.+.++.+|...|+.++|+..|+.....+|+.
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 72 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-D----PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY 72 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-c----HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH
Confidence 44566677777777777777777777777777654 2 4567777777777777777777777766666654
No 61
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.86 E-value=4.3e-05 Score=65.00 Aligned_cols=70 Identities=20% Similarity=0.219 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHH
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIR 242 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVR 242 (276)
...+..|..++.+|+|.+|++.|++++...|.+. .+++.|+.+|...|+.++|+++|+++...+|++...
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~ 187 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG----EIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQ 187 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch----hHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHH
Confidence 3467889999999999999999999999877664 599999999999999999999999998788876544
No 62
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.83 E-value=0.00027 Score=54.83 Aligned_cols=75 Identities=20% Similarity=0.196 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCC------------CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT------------FFGGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS------------~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~ 235 (276)
+...+..|...+..|+|..|++.|+.++...+.+. +....+.+.++.+|...|+.++|+..|+.....
T Consensus 71 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 45678889999999999999999999999877654 344589999999999999999999999999988
Q ss_pred CCCHHHH
Q 023865 236 HPSKNIR 242 (276)
Q Consensus 236 HPd~qVR 242 (276)
+|+....
T Consensus 151 ~p~~~~~ 157 (213)
T 1hh8_A 151 KSEPRHS 157 (213)
T ss_dssp CCSGGGG
T ss_pred Ccccccc
Confidence 8876543
No 63
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.81 E-value=2.2e-05 Score=61.02 Aligned_cols=68 Identities=6% Similarity=0.057 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI 241 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV 241 (276)
..+..|...+..|+|.+|+..|++++...|.+. .+.+.|+.+|...|+.++|+.+|+.+...+|++.+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 75 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRG----DVKLAKADCLLETKQFELAQELLATIPLEYQDNSY 75 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSH----HHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHH
Confidence 467889999999999999999999999776654 49999999999999999999999999877775544
No 64
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.79 E-value=0.00037 Score=56.60 Aligned_cols=63 Identities=11% Similarity=0.221 Sum_probs=28.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (276)
Q Consensus 175 G~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (276)
|...+..|+|.+|+..|+.++...|.+...-..+.+.++.+|...|+.++|+.+|++..+.+|
T Consensus 241 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 303 (359)
T 3ieg_A 241 AEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP 303 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence 444444455555555555544444433332233344444444444444444444444443344
No 65
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.78 E-value=0.0001 Score=59.89 Aligned_cols=66 Identities=9% Similarity=0.043 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (276)
....+..|...+..|+|..|+..|+.++...|.+. .+.+.++.+|...|+.++|+.+|++..+.+|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 102 (359)
T 3ieg_A 37 YIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT----AARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc----hHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 44566667777777777777777777777544332 4777777777777777777777777775555
No 66
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.75 E-value=5.5e-05 Score=66.14 Aligned_cols=70 Identities=14% Similarity=0.195 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
...+...+..|...+.+|+|..|+..|+.++...|.+ ..+.+.++.+|...|+.++|+.+|++....+|+
T Consensus 22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 91 (537)
T 3fp2_A 22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE----PVFYSNISACYISTGDLEKVIEFTTKALEIKPD 91 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 3456667777777777777777777777777766544 247777777777777777777777777766665
No 67
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.74 E-value=0.00028 Score=48.70 Aligned_cols=65 Identities=29% Similarity=0.459 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
..+..|...+..|+|..|+.+|+.++...+.+ ..+.+.++.+|...|+.++|+.+++......|+
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 34555666677777777777777777654433 346666777777777777777777766644443
No 68
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.73 E-value=0.00012 Score=58.11 Aligned_cols=69 Identities=9% Similarity=0.031 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
+...+..|...+.+|+|.+|+..|++++...|.... .+.++++.+|...|+.++|+..|++....+|+.
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 75 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS---VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL 75 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc---HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch
Confidence 356889999999999999999999999998873333 588999999999999999999999999778864
No 69
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.71 E-value=0.00039 Score=52.96 Aligned_cols=63 Identities=19% Similarity=0.136 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHc-CChHHHHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN-NRHADCIALYKQLES 234 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~-Gq~EkAIALCQ~L~~ 234 (276)
....+..|...+..|+|..|+.+|+.++...+.+ ..+.+.++.+|... |+.++|+.+|+....
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS----AEINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 3344555666666666666666666666654433 23666666666666 666667666666663
No 70
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00016 Score=56.27 Aligned_cols=68 Identities=16% Similarity=0.038 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
..++..+..|...+.+|+|.+|+.+|+.++... .. ..+.+.++.+|...|+.++|+.+|++....+|+
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 70 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KD---ITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE 70 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--cc---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 357788999999999999999999999999977 33 369999999999999999999999998865553
No 71
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.70 E-value=0.00022 Score=56.52 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (276)
....+..|...+..|+|..|+.+|++++...|.+. .+.+.|+.+|...|+.++|+.+|++....+|+..
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 77 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN----YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc----HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence 45667788999999999999999999999776654 5899999999999999999999999987788765
No 72
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.70 E-value=0.00039 Score=55.31 Aligned_cols=66 Identities=15% Similarity=0.045 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
+...+..|...+..|+|..|+.+|++++...+.+...-..+.+.|+.+|...|+.++|+.+|++..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 70 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 70 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455677888899999999999999998887666554446788888899999999999998888754
No 73
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.69 E-value=0.00013 Score=58.07 Aligned_cols=68 Identities=10% Similarity=0.006 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
..+..|...+..|+|.+|+..|+.++. .+.+...-..+.+.++.+|...|+.++|+..|++..+.+|+
T Consensus 39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 106 (272)
T 3u4t_A 39 IYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT 106 (272)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc
Confidence 455666677777777777777777776 44444545666777777777777777777777777755554
No 74
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.69 E-value=0.00011 Score=62.38 Aligned_cols=68 Identities=12% Similarity=-0.037 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
+...+..|...+..|+|..|+..|++++...|.+ ..+.+.|+.+|...|+.++|+..|++....+|+.
T Consensus 38 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 38 AVYYTNRALCYLKMQQPEQALADCRRALELDGQS----VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 5567778888999999999999999999865544 3588999999999999999999998877566644
No 75
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.69 E-value=0.00021 Score=55.43 Aligned_cols=67 Identities=10% Similarity=-0.026 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
+...+..|...+..|+|..|+.+|+.++...|.+ ..+.+.++.+|...|+.++|+..|++....+|.
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 103 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL----AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 103 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Confidence 3467888999999999999999999999976544 468999999999999999999999999866665
No 76
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.68 E-value=0.00018 Score=49.71 Aligned_cols=67 Identities=30% Similarity=0.466 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
....+..|...+..|+|..|+.+|+.++...+.+ ..+.+.++.+|...|+.++|+.+++.....+|+
T Consensus 35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 101 (136)
T 2fo7_A 35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101 (136)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 4456677888899999999999999998865543 357888999999999999999999998867775
No 77
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.67 E-value=0.00023 Score=57.57 Aligned_cols=68 Identities=26% Similarity=0.215 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (276)
+...+..|...+..|+|.+|++.|++++... .. ..+.+.|+.+|...|+.++|+..|++....+|+..
T Consensus 118 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 185 (217)
T 2pl2_A 118 APLHLQRGLVYALLGERDKAEASLKQALALE--DT---PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL 185 (217)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 4556788999999999999999999999977 33 36999999999999999999999999998888654
No 78
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.66 E-value=0.00033 Score=63.11 Aligned_cols=82 Identities=15% Similarity=0.151 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHH
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQ 244 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVRqQ 244 (276)
..+...+..|...+..|+|..|+.++++++...|.+ ..+.+.++.+|...|+.++|+..|++..+..|+ +.+...
T Consensus 271 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~ 346 (370)
T 1ihg_A 271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN----TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE 346 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchh----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 346678899999999999999999999999976644 469999999999999999999999998878884 555555
Q ss_pred HHHHHHh
Q 023865 245 AADLRYI 251 (276)
Q Consensus 245 AKqLLyI 251 (276)
-..++..
T Consensus 347 l~~~~~~ 353 (370)
T 1ihg_A 347 LLKVKQK 353 (370)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 79
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.65 E-value=0.00033 Score=55.81 Aligned_cols=66 Identities=11% Similarity=0.008 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
..+..|...+..|+|..|+..|++++...|.+. .+...|+.+|...|+.++|+..|++....+|+.
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 141 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL----DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD 141 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT----HHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc
Confidence 367889999999999999999999999777654 489999999999999999999999988666654
No 80
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.64 E-value=0.00036 Score=55.28 Aligned_cols=67 Identities=21% Similarity=0.249 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
+...+..|...+..|+|..|+.+|++++...|.+ ..+.+.|+.+|...|+.++|+.+|++....+|+
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 109 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDM----PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 109 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc
Confidence 4445566666666666666666666666654432 236666666666666666666666666655553
No 81
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.00072 Score=52.60 Aligned_cols=67 Identities=15% Similarity=0.077 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
+...+..|...+..|+|..|+..|+.++...|.+ ..+.+.|+.+|...|+.++|+..|+.....+|+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence 4566778888888888888888888888866554 358888888888888888888888888766766
No 82
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.63 E-value=0.00061 Score=59.66 Aligned_cols=68 Identities=16% Similarity=0.006 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
+...+..|...+..|+|.+|+..|++++...|.+ ..+.+.++.+|...|+.++|+..|++....+|+.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNN----EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 5667889999999999999999999999987665 3599999999999999999999999998788864
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.63 E-value=0.00034 Score=51.32 Aligned_cols=64 Identities=25% Similarity=0.440 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (276)
..+..|...+..|+|..|+.+|+.++...+.+ ..+.+.|+.+|...|+.++|+.+|+.....+|
T Consensus 112 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 112 VRFRLGVALDNLGRFDEAIDSFKIALGLRPNE----GKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 34555666666666666666666666654332 34666666666666666666666666554433
No 84
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.62 E-value=0.00028 Score=61.78 Aligned_cols=74 Identities=12% Similarity=0.092 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCC-----------chHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF-----------FGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~-----------lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
...+...+..|...+.+|+|..|+..|++++...|.+.. .-..+.+.|+.+|...|+.++|+..|++.+
T Consensus 144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445667889999999999999999999999998887641 113689999999999999999999999999
Q ss_pred HhCCC
Q 023865 234 SNHPS 238 (276)
Q Consensus 234 ~~HPd 238 (276)
..+|+
T Consensus 224 ~~~p~ 228 (336)
T 1p5q_A 224 ELDSN 228 (336)
T ss_dssp HHCTT
T ss_pred HhCCC
Confidence 78876
No 85
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.61 E-value=0.00029 Score=59.17 Aligned_cols=68 Identities=21% Similarity=0.186 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
+...+..|...+..|+|..|+..|++++...|.+ ..+.+.|+.+|...|+.++|+.+|++..+.+|+.
T Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 166 (365)
T 4eqf_A 99 AEAWQFLGITQAENENEQAAIVALQRCLELQPNN----LKALMALAVSYTNTSHQQDACEALKNWIKQNPKY 166 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccc
Confidence 5567788888899999999999999999876544 4588899999999999999999999988666553
No 86
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.60 E-value=0.00069 Score=56.38 Aligned_cols=66 Identities=15% Similarity=0.045 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
+...+..|...+.+|+|..|+.+|+.++...+.+...-..+.+.|+.+|...|+.++|+.+|++..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 74 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 74 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 455677888888888888888888888887665554445778888888888888888888888743
No 87
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.59 E-value=0.00032 Score=53.57 Aligned_cols=69 Identities=16% Similarity=0.154 Sum_probs=59.1
Q ss_pred HHHHHHHHHH-HHhcCCH--HHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865 168 AQLMFELGQK-AYGKGMY--GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (276)
Q Consensus 168 ae~~yeaG~a-ALerGdY--~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (276)
....+..|.. .+..|+| ..|+..|+.++...|.+ ..+.+.|+.+|...|+.++|+..|+.+...+|+..
T Consensus 78 ~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 78 AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE----ITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 4456777888 7799999 99999999999976654 35899999999999999999999999987888753
No 88
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.58 E-value=0.0028 Score=45.02 Aligned_cols=67 Identities=13% Similarity=0.048 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC--CCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~n--S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
.+...+..|...+.+|+|..|+.+++.++...+.. ...-..+.+.++.+|...|+.++|+.+|++..
T Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34567778888888888888888888888765532 22225677788888888888888888887765
No 89
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.58 E-value=0.00026 Score=60.06 Aligned_cols=69 Identities=13% Similarity=0.019 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
...+...+..|...+.+|+|..|+.+|+.++...+.+...-..+.+.|+.+|...|+.++|+.+|++..
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 113 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL 113 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345666778888889999999999999998887666555445688888888888999999988888766
No 90
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.56 E-value=0.00058 Score=52.03 Aligned_cols=65 Identities=18% Similarity=0.146 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (276)
...+..|...+..|+|..|+.+|+.++...|.+ ..+.+.|+.+|...|+.++|+.+|+.....+|
T Consensus 114 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 114 IANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF----PPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 445666777777888888888888877765543 35777778888888888888888877776666
No 91
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.56 E-value=0.00046 Score=50.64 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
....+..|...+..|+|..|+++|+.++...+.+ ..+.+.++.+|...|+.++|+.+|++....+|+.
T Consensus 76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN----FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh----HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence 4556677888889999999999999999876543 3588899999999999999999999988677653
No 92
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.53 E-value=0.00039 Score=53.11 Aligned_cols=68 Identities=18% Similarity=0.164 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHH-HHHcCCh--HHHHHHHHHHHHhCCCH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMA-YEANNRH--ADCIALYKQLESNHPSK 239 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtA-Yqa~Gq~--EkAIALCQ~L~~~HPd~ 239 (276)
....+..|...+..|+|..|+.+|+.++...|.+ ..+.+.++.+ |...|+. ++|+.+|+.....+|+.
T Consensus 44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~ 114 (177)
T 2e2e_A 44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN----AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE 114 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC----HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc
Confidence 3457788999999999999999999999987765 4589999999 8899998 99999999999788874
No 93
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.53 E-value=0.00038 Score=63.85 Aligned_cols=68 Identities=13% Similarity=0.062 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
+...+..|...+..|+|..|+..|++++...|.+ ..+.+.++.||...|+.++|+..|++....+|+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~ 384 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN----EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 3556677888888899999999999988877665 3588899999999999999999999888666654
No 94
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.53 E-value=0.00032 Score=58.20 Aligned_cols=68 Identities=15% Similarity=0.135 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
+...+..|...+..|+|..|+..|+.++...|.+ ..+.+.|+.+|...|+.++|+.+|++....+|+.
T Consensus 98 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 165 (368)
T 1fch_A 98 MEAWQYLGTTQAENEQELLAISALRRCLELKPDN----QTALMALAVSFTNESLQRQACEILRDWLRYTPAY 165 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 4456677788888888888888888888765543 3477888888888888888888888877666654
No 95
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.52 E-value=0.00033 Score=58.96 Aligned_cols=71 Identities=17% Similarity=0.046 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCC--------CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023865 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT--------FFGGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (276)
Q Consensus 165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS--------~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~ 235 (276)
.+++...+..|...+..|+|..||..+.+++...|.+. +.-..+...++.||...|+.++||..|...+.-
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34677889999999999999999999999999888721 112238899999999999999999999999977
No 96
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.50 E-value=0.00027 Score=54.92 Aligned_cols=65 Identities=14% Similarity=0.250 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
..+..|...+..|+|..|+.+|+.++...+.+ ..+.+.++.+|...|+.++|+.+|+.....+|+
T Consensus 127 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 191 (243)
T 2q7f_A 127 LFYMLGTVLVKLEQPKLALPYLQRAVELNEND----TEARFQFGMCLANEGMLDEALSQFAAVTEQDPG 191 (243)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 44555555566666666666666655544332 235555555666666666666666555544443
No 97
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.49 E-value=0.0005 Score=55.54 Aligned_cols=60 Identities=3% Similarity=-0.087 Sum_probs=28.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCC
Q 023865 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN-RHADCIALYKQLESNHP 237 (276)
Q Consensus 174 aG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~G-q~EkAIALCQ~L~~~HP 237 (276)
.+...+..|+|..|+.+|+.++...|.+. .+.+.++.+|...| +.++|+.+|++.....|
T Consensus 62 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~ 122 (330)
T 3hym_B 62 HIGTLVELNKANELFYLSHKLVDLYPSNP----VSWFAVGCYYLMVGHKNEHARRYLSKATTLEK 122 (330)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTST----HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCcCCH----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC
Confidence 34444455555555555555554333222 24555555555555 55555555555543333
No 98
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.48 E-value=0.00044 Score=51.76 Aligned_cols=66 Identities=15% Similarity=0.052 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhcCC---HHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 169 QLMFELGQKAYGKGM---YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 169 e~~yeaG~aALerGd---Y~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
...+.-|...+-.++ ..+|..+|++++...|.+.+ +.++|+.+|...|+.++||..++.+....|.
T Consensus 7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~r----A~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEA----ALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 445666777765555 89999999999997777766 9999999999999999999999999977776
No 99
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.47 E-value=0.00032 Score=55.40 Aligned_cols=63 Identities=13% Similarity=-0.113 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES 234 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~ 234 (276)
....+..|...+..|+|..|+++|+.++...+.+ ..+.+.++.+|...|+.++|+.+|+++..
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRN----ARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc----HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3455666777777888888888888877765543 35777778888888888888888888774
No 100
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.47 E-value=0.00089 Score=57.32 Aligned_cols=69 Identities=10% Similarity=0.055 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (276)
+...+..|...+..|+|..|+..|++++...|.+ ..+.+.|+.+|...|+.++|+.+|+......|+..
T Consensus 60 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 128 (450)
T 2y4t_A 60 YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF----TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEN 128 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence 4556777888899999999999999999876554 46888999999999999999999999987777764
No 101
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.46 E-value=0.0018 Score=51.11 Aligned_cols=67 Identities=12% Similarity=0.122 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
+...+..|...+..|+|.+|+.+|++++...+.+ ..+.+.|+.+|...|+.++|+.+|+.....+|+
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 207 (252)
T 2ho1_A 141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ----PSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 3445556667777777777777777777655433 356777777777777777777777777655554
No 102
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.45 E-value=0.00029 Score=63.49 Aligned_cols=75 Identities=8% Similarity=-0.010 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC------------CCCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 023865 164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR------------PTFFGGEIQIWLAMAYEANNRHADCIALYKQ 231 (276)
Q Consensus 164 ~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~------------nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~ 231 (276)
....+...+..|...+.+|+|..|+..|++++...+. ..+.-..+.+.|+.+|...|+.++|+..|++
T Consensus 219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 298 (370)
T 1ihg_A 219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE 298 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 3445666888999999999999999999999985432 2334457899999999999999999999999
Q ss_pred HHHhCCC
Q 023865 232 LESNHPS 238 (276)
Q Consensus 232 L~~~HPd 238 (276)
....+|+
T Consensus 299 al~~~p~ 305 (370)
T 1ihg_A 299 ALEIDPS 305 (370)
T ss_dssp HHTTCTT
T ss_pred HHHhCch
Confidence 9977775
No 103
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.45 E-value=0.00053 Score=55.32 Aligned_cols=68 Identities=18% Similarity=0.134 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
+...+..|...+..|+|..|+..|+.++...|.+ ..+.+.++.+|...|+.++|+.+|++....+|+.
T Consensus 55 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 122 (327)
T 3cv0_A 55 EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD----IAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 122 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 4455666777778888888888888877765443 3577778888888888888888888777555543
No 104
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.45 E-value=0.00061 Score=58.34 Aligned_cols=64 Identities=14% Similarity=0.014 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
.+..|...+..|+|..|+.+|+.++...|.+ ..+.+.|+.+|...|+.++|+..|++..+.+|+
T Consensus 298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 298 KERICHCFSKDEKPVEAIRVCSEVLQMEPDN----VNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 3444556666666666666666666654332 246666666666666666666666666655554
No 105
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.43 E-value=0.0012 Score=47.01 Aligned_cols=67 Identities=22% Similarity=0.199 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC--CCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~n--S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
.+...+..|...+..|+|.+|+++|++++...+.. ...-..+...|+.+|...|+.++|+..|++..
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 35667888999999999999999999999765432 33446788999999999999999999998876
No 106
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.43 E-value=0.00076 Score=52.37 Aligned_cols=67 Identities=16% Similarity=0.150 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
....+..|...+..|+|..|+++|++++...+.+ ..+.+.++.+|...|+.++|+.+|++....+|+
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 157 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN----GDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN 157 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS----HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 3456777888999999999999999999976654 468999999999999999999999998877775
No 107
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.40 E-value=0.0006 Score=57.23 Aligned_cols=67 Identities=22% Similarity=0.307 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
+...+..|...+..|+|..|+..|+.++...|.+ ..+.+.|+.+|...|+.++|+..|++....+|+
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 279 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED----YSLWNRLGATLANGDRSEEAVEAYTRALEIQPG 279 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3455667777788888888888888888866544 347888888888888888888888887767776
No 108
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.40 E-value=0.0018 Score=49.23 Aligned_cols=89 Identities=10% Similarity=-0.048 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCch--HHHHHHHHHHHHHcCChHHHHHHHHHHH---HhCCCHH
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG--GEIQIWLAMAYEANNRHADCIALYKQLE---SNHPSKN 240 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lG--GEAQmwLAtAYqa~Gq~EkAIALCQ~L~---~~HPd~q 240 (276)
..+...+..|...+..|+|.+|+.+|+.++...+...... ..+...|+.+|...|+.++|+..+++.. ..++++.
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 184 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSE 184 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHH
Confidence 3456678889999999999999999999997655333332 4556899999999999999999987544 3566776
Q ss_pred HHHHHHHHHHhhcC
Q 023865 241 IRRQAADLRYILQA 254 (276)
Q Consensus 241 VRqQAKqLLyILEA 254 (276)
....+...+..+..
T Consensus 185 ~~~~~~~~~~~~~~ 198 (203)
T 3gw4_A 185 AVNELMTRLNGLEH 198 (203)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHhcccchhh
Confidence 66666666666543
No 109
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.39 E-value=0.0015 Score=52.70 Aligned_cols=67 Identities=18% Similarity=0.090 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
....+..|...+..|+|.+|+..|+.++...|.+ ..+.+.|+.+|...|+.++|+.+|++....+|+
T Consensus 206 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 206 AQLWNKLGATLANGNRPQEALDAYNRALDINPGY----VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 3456677888888888888888888888866543 347888888888888888888888888777777
No 110
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.38 E-value=0.0011 Score=60.69 Aligned_cols=69 Identities=12% Similarity=0.212 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHH-HHHHHHHHhCCCHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCI-ALYKQLESNHPSKN 240 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAI-ALCQ~L~~~HPd~q 240 (276)
++..|..|...+..|+|..|+..|++++...|.+.. ++..|+.+|...|+.++|. .+|+.+..+.....
T Consensus 351 ~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~----a~~~l~~~~~~~~~~~~a~~~~~~~~f~k~~~~d 420 (457)
T 1kt0_A 351 EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA----ARLQISMCQKKAKEHNERDRRIYANMFKKFAEQD 420 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C----HHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 567888999999999999999999999998776665 8999999999999998876 57777664443333
No 111
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.36 E-value=0.00032 Score=61.64 Aligned_cols=74 Identities=12% Similarity=0.108 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCC---CchH----------HHHHHHHHHHHHcCChHHHHHHHHH
Q 023865 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT---FFGG----------EIQIWLAMAYEANNRHADCIALYKQ 231 (276)
Q Consensus 165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS---~lGG----------EAQmwLAtAYqa~Gq~EkAIALCQ~ 231 (276)
...+...+..|...+.+|+|..|+..|+.++...+.+. ..|- .+.+.|+.+|...|+.++|+..|++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33455577778888888888888888888887665432 1111 3677788888888888888888887
Q ss_pred HHHhCCC
Q 023865 232 LESNHPS 238 (276)
Q Consensus 232 L~~~HPd 238 (276)
....+|+
T Consensus 256 al~~~p~ 262 (338)
T 2if4_A 256 VLTEEEK 262 (338)
T ss_dssp HHHHCTT
T ss_pred HHHhCCC
Confidence 7766664
No 112
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.35 E-value=0.00088 Score=55.54 Aligned_cols=68 Identities=19% Similarity=0.222 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
+...+..|...+..|+|.+|+.+|++++...|.+ ..+.+.|+.+|...|+.++|+.+|++....+|+.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 131 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH----MEAWQYLGTTQAENEQELLAISALRRCLELKPDN 131 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC
Confidence 3446788999999999999999999999866544 4699999999999999999999999998788753
No 113
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.34 E-value=0.0012 Score=53.35 Aligned_cols=75 Identities=12% Similarity=0.158 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHH
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQAAD 247 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVRqQAKq 247 (276)
...+..|...+..|+|..|+.+|+.++...|.+. .+.+.|+.+|...|+.++|+.+|++.....|+ +.+..+-..
T Consensus 237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 312 (330)
T 3hym_B 237 PLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNA----STYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 312 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCS----HHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccch----HHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHH
Confidence 3567788999999999999999999999776543 59999999999999999999999999877774 444444333
No 114
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.32 E-value=0.00019 Score=52.32 Aligned_cols=59 Identities=14% Similarity=0.064 Sum_probs=46.5
Q ss_pred hcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 180 GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 180 erGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
..|+|.+||.+|++++... ...+.-..+.+.|+.+|...|+.++|+..|++.+..+|+.
T Consensus 2 ~~g~~~~A~~~~~~al~~~-~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 60 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG-LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH 60 (117)
T ss_dssp -----CCCHHHHHHHHSSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCCcHHHHHHHHHHHHHcC-CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 4699999999999999853 2234456799999999999999999999999999888874
No 115
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.30 E-value=0.0013 Score=50.66 Aligned_cols=72 Identities=11% Similarity=0.085 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHH-HHHHHHhCCCH-HHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIAL-YKQLESNHPSK-NIRR 243 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIAL-CQ~L~~~HPd~-qVRq 243 (276)
+...+..|...+..|+|..|+..|++++...|.+. .+.+.|+.+|...|+.++|+.. +++.++-+|+. .+..
T Consensus 65 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~ 138 (150)
T 4ga2_A 65 PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQK----DLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYK 138 (150)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHH
Confidence 56788899999999999999999999999777654 4999999999999999877764 57666578864 4433
No 116
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.30 E-value=0.00067 Score=67.57 Aligned_cols=68 Identities=13% Similarity=0.113 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
+...+..|...+.+|+|.+|++.|++|++..|.+ .++.+.|+.+|...|+.++|+..|++.++-+|+.
T Consensus 43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~----~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~ 110 (723)
T 4gyw_A 43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF----ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 110 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 4556667777777888888888888877765544 3477778888888888888888887777666653
No 117
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.28 E-value=0.0012 Score=51.15 Aligned_cols=64 Identities=19% Similarity=0.124 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
....+..|...+..|+|.+|+..|+.++...|.... ..++..|+.+|...|+.++|+..|+...
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQD--GEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT--THHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh--HHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 456788888889999999999999998887665433 2588888899999999999999998765
No 118
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.26 E-value=0.00069 Score=57.57 Aligned_cols=67 Identities=25% Similarity=0.242 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
+...+..|...+.+|+|.+|++.|++++...|.+. .+.+.|+.+|...|+.++|+..|++....+|+
T Consensus 67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 133 (388)
T 1w3b_A 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI----DGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 34556667777777777777777777776554432 35666666666666666666666666555554
No 119
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.25 E-value=0.00049 Score=60.47 Aligned_cols=66 Identities=11% Similarity=0.026 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
...+..|...+..|+|..|+.+|++++...|.+ ..+.+.++.||...|+.++|+..|++.....|+
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~ 296 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN----PKALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 357889999999999999999999999987654 369999999999999999999999998755665
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.25 E-value=0.0005 Score=58.42 Aligned_cols=68 Identities=18% Similarity=0.101 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
+...+..|...+.+|+|..|+..|+.++...|.+ ..+.+.++.+|...|+.++|+..|++....+|+.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALELDGQS 71 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 4567889999999999999999999999977654 3589999999999999999999999998777764
No 121
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.23 E-value=0.0049 Score=48.18 Aligned_cols=70 Identities=19% Similarity=0.168 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh----CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTI----IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~----~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~ 235 (276)
..+...+..|...+..|+|.+|+.+|++++.. ...+.+.-..+.+.|+.+|...|+.++|+.++++....
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34667788899999999999999999999986 23445666789999999999999999999999998844
No 122
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.22 E-value=0.001 Score=56.55 Aligned_cols=72 Identities=13% Similarity=0.125 Sum_probs=49.1
Q ss_pred HHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH---HHHHHHHHHHHhh
Q 023865 177 KAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK---NIRRQAADLRYIL 252 (276)
Q Consensus 177 aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~---qVRqQAKqLLyIL 252 (276)
..+.+|++..|++.|++++...|.+ ..+++.|+.+|...|+.++|+..|+.+...+|+. .++..--.++..+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~----~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPED----AALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHhhcccCccHHHHHHHHhcCCcc----HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 3444444444555555555544433 3599999999999999999999999999888874 4555444444433
No 123
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.0011 Score=56.96 Aligned_cols=67 Identities=9% Similarity=-0.012 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCch-------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG-------------GEIQIWLAMAYEANNRHADCIALYKQLESNH 236 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lG-------------GEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H 236 (276)
..++.|..++.+|+|.+|++.|..++...+..+... .++...|+.+|...|+.++|+.+++.+...+
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 467889999999999999999999998877665432 2567889999999999999999999887433
No 124
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.21 E-value=0.0092 Score=45.25 Aligned_cols=68 Identities=10% Similarity=0.013 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC---CCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP---TFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~n---S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
..+...+..|...+..|+|..|+.+|++++...... ...-+.+.+.|+.+|...|+.++|+.+|++..
T Consensus 64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 446678889999999999999999999999874422 22456788999999999999999999998865
No 125
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.19 E-value=0.0032 Score=56.99 Aligned_cols=69 Identities=22% Similarity=0.213 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCc-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF-GGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~l-GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
....|..|.++-..|++..|+.+|++++... ..+. ...+++++++++...|+.++|+++++++...+|+
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~--~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSP--AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTST--TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC--CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 3467888999999999999999999988421 1022 5679999999999999999999999999999998
No 126
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.19 E-value=0.0015 Score=55.11 Aligned_cols=73 Identities=8% Similarity=0.018 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCc--h-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF--G-GEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~l--G-GEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (276)
+...+..|...+..|+|.+||.+|++++...+.+... + ..+.+.++.+|...|+.++|+..|++...-+|+..
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 233 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA 233 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 4456778999999999999999999999977765442 1 23667889999999999999999999875566543
No 127
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.17 E-value=0.0012 Score=60.69 Aligned_cols=68 Identities=21% Similarity=0.317 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
+...+..|...+..|+|.+|+++|+++++..|.+ ..+.+.|+.+|...|+.++|+..|++..+.+|+.
T Consensus 57 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 124 (568)
T 2vsy_A 57 PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH----PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124 (568)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 5567788999999999999999999999976654 4689999999999999999999999988788864
No 128
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.17 E-value=0.0011 Score=61.41 Aligned_cols=68 Identities=13% Similarity=0.010 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
+...+..|...+.+|+|.+|++.++++++..|.+ ..+.+.|+.+|...|+.++|+..|++..+.+|+.
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 107 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY----IKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 107 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 5667889999999999999999999999976543 4699999999999999999999999988788864
No 129
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.14 E-value=0.0083 Score=46.89 Aligned_cols=70 Identities=17% Similarity=0.062 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC----CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTII----PRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~----~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~ 235 (276)
..+...+..|...+.+|+|..|+++|++++... ...++.-..+.+.|+.+|...|+.++|+.+|++....
T Consensus 83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456678889999999999999999999999864 2345666789999999999999999999999998844
No 130
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.10 E-value=0.0026 Score=54.11 Aligned_cols=71 Identities=8% Similarity=-0.026 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCch--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG--GEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lG--GEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
+...+..|...+..|+|.+||++|++++...+.+.... ..+.+.++.+|...|+.++|+..|++.. .+|+.
T Consensus 155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 55677889999999999999999999998776544332 3466777888999999999999999988 77753
No 131
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.0025 Score=54.98 Aligned_cols=75 Identities=17% Similarity=0.136 Sum_probs=63.9
Q ss_pred HHHHHHHHHHh---cCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHH
Q 023865 170 LMFELGQKAYG---KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAA 246 (276)
Q Consensus 170 ~~yeaG~aALe---rGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAK 246 (276)
..+..|...+. .|+|..|+.+|+.++...|.+ ..+.+.|+.+|...|+.++|+.+|++....+|+..-...+.
T Consensus 414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 414 PLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS----EQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 56778888899 999999999999999976544 46899999999999999999999999998999876555544
Q ss_pred HH
Q 023865 247 DL 248 (276)
Q Consensus 247 qL 248 (276)
.+
T Consensus 490 ~~ 491 (514)
T 2gw1_A 490 TF 491 (514)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 132
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.09 E-value=0.0018 Score=59.41 Aligned_cols=68 Identities=13% Similarity=-0.011 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN---NRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~---Gq~EkAIALCQ~L~~~HPd~ 239 (276)
+...+..|...+..|+|.+|++.|+++++..|.+ ..+...|+.+|... |+.++|+..|++....+|+.
T Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 91 PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE----PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 5677888999999999999999999999977654 36899999999999 99999999999999888876
No 133
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.07 E-value=0.003 Score=55.23 Aligned_cols=67 Identities=18% Similarity=0.201 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
....+..|...+..|+|..|+..|++++...|.+. .+.+.|+.+|...|+.++|+.+|+.....+|+
T Consensus 310 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 376 (537)
T 3fp2_A 310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV----YPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 34566677778888888888888888887665543 47788888888888888888888887767665
No 134
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.06 E-value=0.0024 Score=53.90 Aligned_cols=72 Identities=19% Similarity=0.173 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHHhhhCCCCCCc--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 168 AQLMFELGQKAYGK-GMYGRAIEFLEGALTIIPRPTFF--GGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 168 ae~~yeaG~aALer-GdY~qAIelLE~Al~~~~~nS~l--GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
+......|..-..+ |+|.+||.+|++++...+..... -..+...|+.+|...|+.++|+.+|++....+|+.
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 45566778877786 99999999999999987744322 24678899999999999999999999999767654
No 135
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.05 E-value=0.0015 Score=55.03 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 023865 184 YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN-----------RHADCIALYKQLESNHPSKNIRRQAADL 248 (276)
Q Consensus 184 Y~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~G-----------q~EkAIALCQ~L~~~HPd~qVRqQAKqL 248 (276)
|.+||..|++|+.+.|.+.. +.+.|..||...| +.++|+..|++-++-.|+...-..|..+
T Consensus 62 ~~eAi~~le~AL~ldP~~~~----A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDE----AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcHH----HHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 67999999999998777655 9999999999775 8999999999998899998777766554
No 136
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.05 E-value=0.0023 Score=54.34 Aligned_cols=65 Identities=20% Similarity=0.193 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
..+..|...+.+|+|..|++.|+.++...|.+ ..+...|+.+|...|+.++|+.+|++....+|+
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 303 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHF----PDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC----HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Confidence 34555666677777777777777777644433 236666777777777777777777766655554
No 137
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.04 E-value=0.0034 Score=50.20 Aligned_cols=69 Identities=17% Similarity=0.163 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC----CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR----PTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~----nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~ 235 (276)
.+...+..|...+.+|+|..|+.+|+.++..... +.+.-..+...|+.+|...|+.++|+.+|++....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI 98 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3556788899999999999999999999986432 45556789999999999999999999999998843
No 138
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.04 E-value=0.0018 Score=64.57 Aligned_cols=68 Identities=18% Similarity=0.147 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
+...+..|...+..|+|.+|++.|+++++..|.+ ..+.+.|+.+|...|+.++|++.|++..+..|+.
T Consensus 77 ~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~----~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~ 144 (723)
T 4gyw_A 77 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF----ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 144 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 5677888999999999999999999999876654 3589999999999999999999999988778863
No 139
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.00 E-value=0.0044 Score=49.24 Aligned_cols=68 Identities=13% Similarity=0.069 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC--CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRHADCIALYKQLES 234 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~n--S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~ 234 (276)
.+...+..|...+..|+|.+|+.+|+.++...+.. ...-..+.+.++.+|...|+.++|+.++++...
T Consensus 222 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 222 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34567888899999999999999999998766533 233356788899999999999999999988763
No 140
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=96.99 E-value=0.0045 Score=53.08 Aligned_cols=61 Identities=8% Similarity=-0.060 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
..+..|...+..|+|..|++.|++ + ...++.+.++.+|...|+.++|+..++.+...+|+.
T Consensus 103 ~~~~la~~~~~~g~~~~Al~~l~~------~---~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~ 163 (291)
T 3mkr_A 103 FLLMAASIYFYDQNPDAALRTLHQ------G---DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA 163 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTT------C---CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHhC------C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc
Confidence 345556666666666666666655 1 122466666666666666666666666665555554
No 141
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.99 E-value=0.00038 Score=64.64 Aligned_cols=69 Identities=13% Similarity=0.057 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
.+...+..|...+.+|+|.+|+++|+++++..|.+ ..+...|+.+|...|+.++|+..|++....+|+.
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 73 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 73 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 34556677888899999999999999999986655 4699999999999999999999999999777763
No 142
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.99 E-value=0.0047 Score=52.34 Aligned_cols=64 Identities=14% Similarity=0.062 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCC--chHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF--FGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~--lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
..+..|...+.+|+|..|+.+|+.++...+.... .-..+...|+.+|...|+.++|+.+|++..
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666677777777777777777665543222 224556666677777777777777666654
No 143
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.98 E-value=0.0079 Score=50.27 Aligned_cols=85 Identities=11% Similarity=0.069 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC--CCCchHHHHHHHHHHHHHcCChHHH-HHHHHH---HHHhCCCHHHH
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPR--PTFFGGEIQIWLAMAYEANNRHADC-IALYKQ---LESNHPSKNIR 242 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~--nS~lGGEAQmwLAtAYqa~Gq~EkA-IALCQ~---L~~~HPd~qVR 242 (276)
...+..|...+.+|+|.+|+.++++++...+. ....-+.+.+.++.+|...|+.++| +..|++ +.+...++...
T Consensus 197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~~~ 276 (293)
T 2qfc_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYK 276 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHhhH
Confidence 57788999999999999999999999976542 2233378889999999999999999 555554 44567777776
Q ss_pred HHHHHHHHhhc
Q 023865 243 RQAADLRYILQ 253 (276)
Q Consensus 243 qQAKqLLyILE 253 (276)
+.-..++.-||
T Consensus 277 ~~~~~~~~~~~ 287 (293)
T 2qfc_A 277 EALVNKISRLE 287 (293)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHh
Confidence 66666666554
No 144
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.95 E-value=0.0048 Score=51.87 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHH
Q 023865 167 TAQLMFELGQKAYGKG---MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRR 243 (276)
Q Consensus 167 ~ae~~yeaG~aALerG---dY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRq 243 (276)
..+..|+-|..-.... ++.++|.+|+.++....+. .--...++|+.+|...|+.++|+..|..+....|+-...+
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~--~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH--HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc--chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3567888888888877 8889999999999866221 1236999999999999999999999999998999765544
Q ss_pred HHHHH
Q 023865 244 QAADL 248 (276)
Q Consensus 244 QAKqL 248 (276)
..+++
T Consensus 109 ~Lk~~ 113 (152)
T 1pc2_A 109 ELERL 113 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 145
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.93 E-value=0.0086 Score=47.85 Aligned_cols=69 Identities=19% Similarity=0.122 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC----CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP----RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~----~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~ 235 (276)
.+...+..|...+..|+|..|+.+|+.++.... .+.+.-..+.+.|+.+|...|+.++|+.+|++..+.
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 140 (311)
T 3nf1_A 68 VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 140 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 455678889999999999999999999998642 334556789999999999999999999999998844
No 146
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.90 E-value=0.013 Score=47.45 Aligned_cols=70 Identities=14% Similarity=0.089 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCH
Q 023865 168 AQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 168 ae~~yeaG~aALe----rGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa----~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
....+..|...+. .|+|.+|+.+|++++... -..+.+.|+.+|.. .|+.++|+.+|++.. ...++
T Consensus 38 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-~~~~~ 110 (273)
T 1ouv_A 38 NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC-DLKYA 110 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCH
T ss_pred HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHH-HcCCc
Confidence 4566677777777 788888888888877642 24677778888887 888888888888777 44455
Q ss_pred HHHHH
Q 023865 240 NIRRQ 244 (276)
Q Consensus 240 qVRqQ 244 (276)
...-.
T Consensus 111 ~a~~~ 115 (273)
T 1ouv_A 111 EGCAS 115 (273)
T ss_dssp HHHHH
T ss_pred cHHHH
Confidence 44333
No 147
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.90 E-value=0.0016 Score=62.79 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
..+..|...+..|+|.+|++.|+++++..|.+. .+.+.|+.+|...|+.++ +..|++..+.+|+
T Consensus 469 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~----~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~ 532 (681)
T 2pzi_A 469 LVWYRAVAELLTGDYDSATKHFTEVLDTFPGEL----APKLALAATAELAGNTDE-HKFYQTVWSTNDG 532 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCS----HHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc
Confidence 444455555555555555555555555444332 245555555555555555 5555555444443
No 148
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.89 E-value=0.012 Score=48.95 Aligned_cols=66 Identities=23% Similarity=0.203 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC--CCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~n--S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
+...+..|...+..|+|..|+.+|+.++...+.. ...-..+...|+.+|...|+.++|+.+|++..
T Consensus 267 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5567788999999999999999999999876533 33335688899999999999999999999855
No 149
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.88 E-value=0.0045 Score=51.77 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhh---CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTI---IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~---~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
+...+..|...+.+|+|..|+.+|++++.. .+........+.+.++.+|...|+.++|+.+|++..
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 556778899999999999999999999944 333333334799999999999999999999999876
No 150
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=96.88 E-value=0.0041 Score=55.51 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
+...+..|...+..|+|..|++.|++++...|.+ ..+...|+.+|...|+.++|+.+|+++.+.+|+.
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTND----ANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 4456777888899999999999999999976544 3699999999999999999999999999888875
No 151
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.86 E-value=0.007 Score=52.14 Aligned_cols=70 Identities=9% Similarity=0.020 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC-CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR-PTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~-nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~ 235 (276)
..+...+..|...+.+|+|..|+++|++++..... ..+....+.+.|+.+|...|+.++|+.+|++...-
T Consensus 220 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34667888999999999999999999999985542 34455889999999999999999999999987744
No 152
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.85 E-value=0.0057 Score=51.14 Aligned_cols=68 Identities=13% Similarity=0.128 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC--CCchHHHHHHHHHHHHHcCC-hHHHHHHHHHHH
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNR-HADCIALYKQLE 233 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~n--S~lGGEAQmwLAtAYqa~Gq-~EkAIALCQ~L~ 233 (276)
..+...+..|...+.+|+|.+|+.++++++...+.. ...-+.+.+.++.+|...|+ .++|+..|++-.
T Consensus 194 ~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 446678999999999999999999999999876533 33347899999999999996 499999988765
No 153
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.00023 Score=49.40 Aligned_cols=66 Identities=15% Similarity=0.084 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCc--hHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF--GGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~l--GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
....+..|...+..|+|..|++.|+.++...|.+... ...+.+.++.+|...|+.+.|+..++.+.
T Consensus 38 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 38 PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 4567889999999999999999999999977765221 26788999999999999988887766554
No 154
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=96.76 E-value=0.004 Score=56.80 Aligned_cols=68 Identities=3% Similarity=-0.026 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 168 AQLMFELGQKAYGKGM-YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 168 ae~~yeaG~aALerGd-Y~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
+...+..|...+..|+ |..||..|++++...|.+. ++...++.+|...|+.++|+..|++.+...|+.
T Consensus 131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~----~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~ 199 (382)
T 2h6f_A 131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY----QVWHHRRVLVEWLRDPSQELEFIADILNQDAKN 199 (382)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC
Confidence 5566777888888896 9999999999998766654 488889999999999999999999888777754
No 155
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.73 E-value=0.014 Score=50.10 Aligned_cols=68 Identities=7% Similarity=0.072 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC-C-CchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP-T-FFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~n-S-~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
..+...+..|...+.+|+|..|+.+|++++...... . +.-..+.+.|+.+|...|+.++|+.+|++..
T Consensus 222 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 222 LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345678889999999999999999999999865422 2 5557899999999999999999999998866
No 156
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.73 E-value=0.0027 Score=53.40 Aligned_cols=66 Identities=18% Similarity=0.167 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-------CCCCCCchHHHH----HHHHHHHHHcCChHHHHHHHHHHHHhC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTI-------IPRPTFFGGEIQ----IWLAMAYEANNRHADCIALYKQLESNH 236 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~-------~~~nS~lGGEAQ----mwLAtAYqa~Gq~EkAIALCQ~L~~~H 236 (276)
+...++.|......|+|..||..++.++.+ .|.+ ..+. +-++.||.+.|+.++|+..|++.+.-.
T Consensus 57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~----~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE----GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCch----HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 336889999999999999999999999997 6543 4566 999999999999999999999987443
Q ss_pred C
Q 023865 237 P 237 (276)
Q Consensus 237 P 237 (276)
|
T Consensus 133 p 133 (159)
T 2hr2_A 133 E 133 (159)
T ss_dssp H
T ss_pred C
Confidence 3
No 157
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.64 E-value=0.019 Score=54.92 Aligned_cols=68 Identities=6% Similarity=-0.128 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh----CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTI----IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~----~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
.++......|.....+|+|.+|+.+++++++. .+++.+.-+....-|+.+|..+|+.++|+.+|++-.
T Consensus 349 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 349 YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46778888899999999999999999999854 568888888999999999999999999999998754
No 158
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.61 E-value=0.023 Score=52.10 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=63.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-------CCCHHHHHHH
Q 023865 173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN-------HPSKNIRRQA 245 (276)
Q Consensus 173 eaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~-------HPd~qVRqQA 245 (276)
..+...+..|+|..||..|..++...|.+-. +...|..||...|+..+|+..|+.+... -|.++++..-
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~----~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREP----LWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH----HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3456678999999999999999998877655 8899999999999999999999998732 5889998888
Q ss_pred HHHHHh
Q 023865 246 ADLRYI 251 (276)
Q Consensus 246 KqLLyI 251 (276)
+++|.-
T Consensus 252 ~~il~~ 257 (388)
T 2ff4_A 252 ERILRQ 257 (388)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 877653
No 159
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=96.60 E-value=0.0088 Score=51.25 Aligned_cols=67 Identities=19% Similarity=0.142 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHH-HHHHHHHHHHhCCCH
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHAD-CIALYKQLESNHPSK 239 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~Ek-AIALCQ~L~~~HPd~ 239 (276)
...+..|...+..|+|..|++.|+.++...|.+. .+...|+.+|...|+..+ |..+++++...+|+.
T Consensus 201 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~----~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 201 LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP----ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence 3455566677777777777777777777554433 366777777777777765 456666666666653
No 160
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.53 E-value=0.013 Score=56.03 Aligned_cols=69 Identities=9% Similarity=0.056 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC----CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP----RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~----~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
+..++..++.+..+..+|+|.+|+.+++.+++... .+.+.-..+...|+.+|..+|+.++|+.+|++..
T Consensus 306 l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL 378 (490)
T 3n71_A 306 IQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV 378 (490)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44455677777788899999999999999996543 5666677899999999999999999999998865
No 161
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=96.52 E-value=0.0092 Score=53.21 Aligned_cols=64 Identities=16% Similarity=0.191 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (276)
..+..|...+..|+|..|+++|+.++...+.+ ..+...|+.+|...|+.++|+.+|++....+|
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 438 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQF----GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ 438 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 34445666667777777777777776654432 23666677777777777777777766654555
No 162
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.50 E-value=0.023 Score=48.12 Aligned_cols=70 Identities=14% Similarity=-0.010 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC----CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP----TFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~n----S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (276)
+...+..|...+.+|+|.+|+++++.++...+.. ++....+.+.|+.+|...|+.++|+.+|++.....|
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 166 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 3345667788888888888888888888765421 234456677788888888888888888887664444
No 163
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=96.50 E-value=0.006 Score=55.63 Aligned_cols=69 Identities=10% Similarity=-0.044 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (276)
+...+..|...+..|+|..||..|++++...|.+.. +.+.++.+|...|+.++|+..|++.+..+|+..
T Consensus 166 ~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~----a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~ 234 (382)
T 2h6f_A 166 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYH----AWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNN 234 (382)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHH----HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Confidence 556788899999999999999999999998777654 999999999999999999999999998888643
No 164
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=96.50 E-value=0.013 Score=53.74 Aligned_cols=72 Identities=10% Similarity=0.081 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhc--------CCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 168 AQLMFELGQKAYGK--------GMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 168 ae~~yeaG~aALer--------GdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
+...+..|...+.. |+|.+|+..|++++...|. .+.-..+.+.|+.+|...|+.++|+..|++.....|+.
T Consensus 213 ~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 291 (474)
T 4abn_A 213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK-ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW 291 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG-GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC-cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 44556677777777 9999999999999997552 11334699999999999999999999999988778874
Q ss_pred H
Q 023865 240 N 240 (276)
Q Consensus 240 q 240 (276)
.
T Consensus 292 ~ 292 (474)
T 4abn_A 292 P 292 (474)
T ss_dssp H
T ss_pred H
Confidence 4
No 165
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.50 E-value=0.033 Score=45.11 Aligned_cols=71 Identities=11% Similarity=0.074 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCC
Q 023865 166 ATAQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHP 237 (276)
Q Consensus 166 e~ae~~yeaG~aALe----rGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa----~Gq~EkAIALCQ~L~~~HP 237 (276)
......+..|...+. .|+|..|+.+|++++... ...+.+.|+.+|.. .|+.++|+.+|++.. ...
T Consensus 72 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~-~~~ 144 (273)
T 1ouv_A 72 NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC-DLN 144 (273)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH-HTT
T ss_pred CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH-hcC
Confidence 346678888999999 999999999999999852 35799999999999 999999999999999 454
Q ss_pred CHHHHH
Q 023865 238 SKNIRR 243 (276)
Q Consensus 238 d~qVRq 243 (276)
++...-
T Consensus 145 ~~~a~~ 150 (273)
T 1ouv_A 145 DGDGCT 150 (273)
T ss_dssp CHHHHH
T ss_pred cHHHHH
Confidence 554433
No 166
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.43 E-value=0.0078 Score=51.10 Aligned_cols=52 Identities=8% Similarity=0.024 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHhhhCCCCCC--chHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 182 GMYGRAIEFLEGALTIIPRPTF--FGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 182 GdY~qAIelLE~Al~~~~~nS~--lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
|+|.+|+++|++++...+.... .-..+...|+.+|...|+.++||..|++..
T Consensus 129 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 129 LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555555554443211 123444445555555555555555555555
No 167
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.43 E-value=0.009 Score=49.93 Aligned_cols=66 Identities=12% Similarity=0.104 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC---CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIP---RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~---~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
+......|...+..|+|.+|+.+|++++.... .+.+.-..+.+.|+.+|...|+.++|+..|++..
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33567789999999999999999999996433 3445556788999999999999999999998766
No 168
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.38 E-value=0.0069 Score=52.21 Aligned_cols=69 Identities=17% Similarity=0.223 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC--CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES 234 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~--~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~ 234 (276)
..+...+..|...+..|+|..|+++|++++...+ .+...-+.+...|+.+|...|+.++|+..|++...
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3466778899999999999999999999998765 23334567888999999999999999999999885
No 169
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.34 E-value=0.0047 Score=59.63 Aligned_cols=62 Identities=13% Similarity=0.083 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 172 yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
+..|...+..|+|.+ ++.|+++++..|.+. .+.+.|+.+|...|+.++|++.|++.....|+
T Consensus 505 ~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 566 (681)
T 2pzi_A 505 LALAATAELAGNTDE-HKFYQTVWSTNDGVI----SAAFGLARARSAEGDRVGAVRTLDEVPPTSRH 566 (681)
T ss_dssp HHHHHHHHHHTCCCT-TCHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT
T ss_pred HHHHHHHHHcCChHH-HHHHHHHHHhCCchH----HHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc
Confidence 444555555555555 555555555444332 25555555555555555555555555544444
No 170
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.33 E-value=0.02 Score=46.29 Aligned_cols=68 Identities=18% Similarity=0.104 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcC----ChHHHHHHHHHHHHhCCCHHH
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN----RHADCIALYKQLESNHPSKNI 241 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~G----q~EkAIALCQ~L~~~HPd~qV 241 (276)
.-+...+..|...+..|+|.+|+.+|++++.. . -..+++.|+..|.. | +.++|+.+|++.. ...++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~-~~g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ---G---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV-EAGSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---T---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH-HTTCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---C---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH-HCCCHHH
Confidence 34666777888888888888888888888763 1 13678888888887 6 7888888888877 4555543
No 171
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.28 E-value=0.01 Score=50.84 Aligned_cols=67 Identities=12% Similarity=0.138 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCC---CchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT---FFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS---~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
.+...+..|...+..|+|..|+.++++++...+... +.-+.+...|+.+|...|+.++|+..|++..
T Consensus 142 ~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 211 (383)
T 3ulq_A 142 KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAY 211 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 456667777788888888888888888887655442 2234677778888888888888888877665
No 172
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.26 E-value=0.063 Score=45.38 Aligned_cols=64 Identities=20% Similarity=0.120 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCc-hHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF-GGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~l-GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
..+-.|..++.+|+|.+|+.+++.++...+...+. -..+...++.+|...|+.++|+.++++..
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 80 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 80 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34556667777777777777777777665533321 23455666777777777777777776654
No 173
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.25 E-value=0.0094 Score=42.61 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 186 RAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 186 qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
.|++.|+.++...|.+ ..+.+.|+.+|...|+.++|+..|+.....+|+.
T Consensus 3 ~a~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 52 (115)
T 2kat_A 3 AITERLEAMLAQGTDN----MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY 52 (115)
T ss_dssp CHHHHHHHHHTTTCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhCCCc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc
Confidence 5789999999866644 3599999999999999999999999999788864
No 174
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.25 E-value=0.016 Score=54.47 Aligned_cols=68 Identities=10% Similarity=0.033 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh----CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTI----IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~----~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
.++......|.....+|+|.+|+.+++++++. .+++.+.-+...+-|+.+|..+|+.++|+.+|++-.
T Consensus 338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 338 YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 45677888899999999999999999999854 568888888999999999999999999999998754
No 175
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.21 E-value=0.016 Score=54.06 Aligned_cols=65 Identities=5% Similarity=-0.028 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhh----CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTI----IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~----~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
+..+.....+..+|+|.+|+++++.+++. ...+.+.-..+...|+.+|..+|+.++|+.+|++..
T Consensus 288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L 356 (429)
T 3qwp_A 288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM 356 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34556666788999999999999999865 345666678899999999999999999999999876
No 176
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.16 E-value=0.042 Score=42.14 Aligned_cols=69 Identities=12% Similarity=0.042 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCC
Q 023865 166 ATAQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHP 237 (276)
Q Consensus 166 e~ae~~yeaG~aALe----rGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa----~Gq~EkAIALCQ~L~~~HP 237 (276)
.-+...+..|..-+. .++|.+|+.+|++++.. .. ..+++.|+..|.. .++.++|+.+|++-. ...
T Consensus 55 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~---g~---~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~~g 127 (138)
T 1klx_A 55 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL---ND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC-RLG 127 (138)
T ss_dssp TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT
T ss_pred CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC---CC---HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH-HCC
Confidence 456778889988888 89999999999999984 22 4799999999999 999999999999998 566
Q ss_pred CHHH
Q 023865 238 SKNI 241 (276)
Q Consensus 238 d~qV 241 (276)
++.-
T Consensus 128 ~~~A 131 (138)
T 1klx_A 128 SEDA 131 (138)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6643
No 177
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.14 E-value=0.029 Score=52.74 Aligned_cols=66 Identities=8% Similarity=-0.080 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC----CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTII----PRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~----~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
+...++.+..+-..|+|.+|+.+++++++.. .++.+.-..+...|+.+|..+|+.++|+.+|++..
T Consensus 298 ~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL 367 (433)
T 3qww_A 298 ARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKII 367 (433)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 4455666777778899999999999999753 45666667889999999999999999999999876
No 178
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.09 E-value=0.02 Score=53.44 Aligned_cols=68 Identities=6% Similarity=-0.029 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh----CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTI----IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~----~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
.++......|.....+|+|.+|+.++++++.. .+++.+.-+...+-|+.+|..+|+.++|+.+|++-.
T Consensus 327 ~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 327 YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 35677788889999999999999999998854 678899889999999999999999999999988654
No 179
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.87 E-value=0.022 Score=49.04 Aligned_cols=75 Identities=20% Similarity=0.205 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC---CCCC------------------chHHHHHHHHHHHHHcCChHHH
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP---RPTF------------------FGGEIQIWLAMAYEANNRHADC 225 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~---~nS~------------------lGGEAQmwLAtAYqa~Gq~EkA 225 (276)
.++..+--|..-|.+|+|++|..+|..|++... .+.. .-.++++.++.+|...|+.++|
T Consensus 62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A 141 (167)
T 3ffl_A 62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA 141 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence 356678889999999999999999999865433 1110 1127999999999999999999
Q ss_pred HHHHHHHHHhCCCHHH
Q 023865 226 IALYKQLESNHPSKNI 241 (276)
Q Consensus 226 IALCQ~L~~~HPd~qV 241 (276)
|++-+.|-.+...|.|
T Consensus 142 i~~Le~Ip~k~Rt~kv 157 (167)
T 3ffl_A 142 IAILDGIPSRQRTPKI 157 (167)
T ss_dssp HHHHHTSCGGGCCHHH
T ss_pred HHHHhcCCchhcCHHH
Confidence 9998877545555544
No 180
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=95.84 E-value=0.062 Score=49.31 Aligned_cols=65 Identities=9% Similarity=0.019 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (276)
.+-.|...+..|+|.+|+++|.+.+...+ +....+++..+|..|...|+.+.|.++++.+.+.+|
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~--~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~ 167 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDNDE--AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE 167 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSSC--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCC--CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 46678888889999999999999877444 345679999999999999999999999999998888
No 181
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=95.83 E-value=0.015 Score=52.63 Aligned_cols=66 Identities=9% Similarity=0.060 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
..|..|..+++.|+|..|+.+|+++..... ......+.++|.+||...|+.++|+..|++.. .-|.
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d--~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~-~g~~ 202 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPD--KFLAGAAGVAHGVAAANLALFTEAERRLTEAN-DSPA 202 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccCC--cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHh-cCCC
Confidence 458888999999999999999998766331 11345799999999999999999999999998 5554
No 182
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=95.83 E-value=0.024 Score=37.73 Aligned_cols=49 Identities=31% Similarity=0.470 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN 220 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~G 220 (276)
....+..|...+..|+|..|+.+|+.++...|.+ ..+...|+.+|...|
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcC
Confidence 3456788999999999999999999999976654 358889999988765
No 183
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=95.75 E-value=0.088 Score=45.55 Aligned_cols=77 Identities=16% Similarity=0.135 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCch------------------------------------------
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG------------------------------------------ 205 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lG------------------------------------------ 205 (276)
....+..|...+..|+|..|+..|++++...|.+....
T Consensus 247 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 326 (472)
T 4g1t_A 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKA 326 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34456678888899999999999999888776553221
Q ss_pred -------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023865 206 -------GEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ 244 (276)
Q Consensus 206 -------GEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ 244 (276)
..+.+.|+.+|...|+.++|+..|++..+..|++.....
T Consensus 327 ~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~ 372 (472)
T 4g1t_A 327 DEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQL 372 (472)
T ss_dssp HHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred hhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHH
Confidence 112356788999999999999999998867888765543
No 184
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=95.73 E-value=0.1 Score=42.09 Aligned_cols=71 Identities=11% Similarity=0.135 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHHhCC
Q 023865 168 AQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN-N-----RHADCIALYKQLESNHP 237 (276)
Q Consensus 168 ae~~yeaG~aALe----rGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~-G-----q~EkAIALCQ~L~~~HP 237 (276)
+...+..|..-+. .++|.+|+.+|++++.. +.+. .+++.|+..|... | +.++|+.+|+.-. ...
T Consensus 125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~----~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~-~~g 198 (212)
T 3rjv_A 125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTG----YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSC-LEG 198 (212)
T ss_dssp HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTT----HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHH-HHT
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCH----HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH-HcC
Confidence 5667788888887 88899999999998885 2222 3888899988653 4 8899999999888 455
Q ss_pred CHHHHHH
Q 023865 238 SKNIRRQ 244 (276)
Q Consensus 238 d~qVRqQ 244 (276)
++.-...
T Consensus 199 ~~~A~~~ 205 (212)
T 3rjv_A 199 FDTGCEE 205 (212)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 5554444
No 185
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=95.70 E-value=0.054 Score=49.11 Aligned_cols=65 Identities=9% Similarity=-0.041 Sum_probs=54.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023865 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI 241 (276)
Q Consensus 172 yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV 241 (276)
+..+. ..++|++..|...|+.++...|.+. .+++.++..+...|+.++|+.+|+.....||+..+
T Consensus 17 ~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~----~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~l 81 (530)
T 2ooe_A 17 SILIR-EAQNQPIDKARKTYERLVAQFPSSG----RFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDL 81 (530)
T ss_dssp HHHHH-HHHSSCHHHHHHHHHHHHTTCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHH
T ss_pred HHHHH-HHHhCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHH
Confidence 33444 3678999999999999999776553 58888999999999999999999999988897654
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.045 Score=46.80 Aligned_cols=67 Identities=13% Similarity=0.133 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC--CCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~n--S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
.+...+..|..-+.+|+|.+|+.+|..++...... .+.-.++.+.++..|...|+.++|+.+|++..
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 36677888999999999999999999998665533 44556888999999999999999999998764
No 187
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=95.42 E-value=0.065 Score=45.17 Aligned_cols=57 Identities=9% Similarity=0.000 Sum_probs=28.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 174 aG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
-|......|+|..|++.|+.++...|.+.. .+.+.++..+...|+.++|+.+|+...
T Consensus 105 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~a~ 161 (308)
T 2ond_A 105 YADYEESRMKYEKVHSIYNRLLAIEDIDPT---LVYIQYMKFARRAEGIKSGRMIFKKAR 161 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSSSSCTH---HHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhccccCcc---HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 344444555555555555555553332211 145555555555555555555555555
No 188
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=95.36 E-value=0.095 Score=44.16 Aligned_cols=65 Identities=14% Similarity=-0.026 Sum_probs=39.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhC--CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 172 FELGQKAYGKGMYGRAIEFLEGALTII--PRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 172 yeaG~aALerGdY~qAIelLE~Al~~~--~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
+.-|..-...|++..|+.+|+.++... ++... ..+...++..+...|+.++|+.+++...+.+|+
T Consensus 207 ~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~--~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 207 LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS--GEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 333444556677777777777777642 22111 245555566666777777777777776666664
No 189
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.20 E-value=0.34 Score=39.63 Aligned_cols=80 Identities=18% Similarity=0.174 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhcCCHHH---HHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGR---AIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ 244 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~q---AIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ 244 (276)
.+..|+-|-......+-.. +|.+|+..+....+. .--+..++||.+|.+.|+..+|...|..|....|+-. |
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~--~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~---Q 109 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN---Q 109 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---H
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH---H
Confidence 5667777777777776666 999999988854221 2236899999999999999999999999998888753 5
Q ss_pred HHHHHHhh
Q 023865 245 AADLRYIL 252 (276)
Q Consensus 245 AKqLLyIL 252 (276)
|+.|...+
T Consensus 110 A~~Lk~~i 117 (126)
T 1nzn_A 110 AKELERLI 117 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 190
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.19 E-value=0.071 Score=50.50 Aligned_cols=73 Identities=12% Similarity=0.032 Sum_probs=62.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 023865 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLR 249 (276)
Q Consensus 172 yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLL 249 (276)
...|..++-+|++..|+.+|++|+.+.+ + --+.+++..+|.-.|+.++|++.|.+-..-.|...+-.|++.+.
T Consensus 281 ~alal~~l~~gd~d~A~~~l~rAl~Ln~--s---~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~~~~l~ 353 (372)
T 3ly7_A 281 QIKAVSALVKGKTDESYQAINTGIDLEM--S---WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGI 353 (372)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCC--C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHHHHHSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCC--C---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHHHhCce
Confidence 3446667788999999999999999852 3 24778999999999999999999988777999999999998874
No 191
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=95.11 E-value=0.16 Score=45.49 Aligned_cols=66 Identities=17% Similarity=0.127 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCC
Q 023865 167 TAQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 167 ~ae~~yeaG~aALe----rGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa----~Gq~EkAIALCQ~L~~~HPd 238 (276)
.....+..|..-+. .++|.+|+.+|++++... . ..++..|+..|.. .|+.++|+.+|++.....|+
T Consensus 362 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 362 EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---L---SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---C---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 35567777888888 899999999999998842 1 4799999999998 89999999999999877755
No 192
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.90 E-value=0.098 Score=38.85 Aligned_cols=48 Identities=10% Similarity=-0.099 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAY 216 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAY 216 (276)
....+-.|..+|++|+|.+||.+++.++...|. ++--..++-.+..|.
T Consensus 43 ~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~i~~~I~~A~ 90 (93)
T 3bee_A 43 EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVTIIESINKAK 90 (93)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHHHHHHHHHH
Confidence 566788899999999999999999999998888 665555555555443
No 193
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.88 E-value=0.015 Score=40.11 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (276)
..+..|...+..|+|..|++.|+.++...|.+.. +..+ +...+|+..|+++...+|
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~--------~~~~~a~~~~~~~~~~~p 92 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA----LQAR--------KMVMDILNFYNKDMYNQL 92 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH----HHHH--------HHHHHHHHHHCCTTHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH----HHHH--------HHHHHHHHHHHHHhccCc
Confidence 6788899999999999999999999998776655 3322 666777777776654444
No 194
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=94.57 E-value=0.18 Score=43.64 Aligned_cols=74 Identities=7% Similarity=-0.018 Sum_probs=52.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHH-HHHHHcCChHHHHHHHHHHHHhCCCHHHHHHH
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLA-MAYEANNRHADCIALYKQLESNHPSKNIRRQA 245 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLA-tAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQA 245 (276)
.+..|...+..|+|.+|++.|++++...+.+... ..+.+.+. .++...|+.++||..|++-.+-.|+..-+..+
T Consensus 337 ~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~ 411 (472)
T 4g1t_A 337 CSILASLHALADQYEEAEYYFQKEFSKELTPVAK-QLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM 411 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHH-HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred hhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH
Confidence 3567888999999999999999999865433221 11222222 34557899999999999988677776554443
No 195
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=94.53 E-value=0.34 Score=43.42 Aligned_cols=60 Identities=15% Similarity=0.195 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHH
Q 023865 168 AQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLE 233 (276)
Q Consensus 168 ae~~yeaG~aALe----rGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa----~Gq~EkAIALCQ~L~ 233 (276)
+...+..|...+. .++|.+|+.+|++++.. + -..+++.|+..|.. .++.++|+.+|++..
T Consensus 75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 142 (490)
T 2xm6_A 75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK---G---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAA 142 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 4455555666555 66666666666666552 1 12466666666665 566666666666665
No 196
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.87 E-value=0.11 Score=43.41 Aligned_cols=79 Identities=10% Similarity=0.034 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023865 168 AQLMFELGQKAYGKG---MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ 244 (276)
Q Consensus 168 ae~~yeaG~aALerG---dY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ 244 (276)
.+..|+-+-...... +...+|.+|+..+...+... -+-.++||.+|.+.|+..+|...|..|....|+-. |
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~---Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~---Q 113 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR---RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK---Q 113 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH---H
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchh---HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH---H
Confidence 455666666666554 55689999999998654333 37899999999999999999999999997777764 5
Q ss_pred HHHHHHhh
Q 023865 245 AADLRYIL 252 (276)
Q Consensus 245 AKqLLyIL 252 (276)
|+.|...+
T Consensus 114 A~~Lk~~I 121 (134)
T 3o48_A 114 VGALKSMV 121 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 197
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=93.31 E-value=0.32 Score=44.08 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=45.2
Q ss_pred cCCHH-------HHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 181 KGMYG-------RAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 181 rGdY~-------qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
.|++. .|+..|+.++....+.+ ..+.+.++..|...|+.++|+.+|++.....|+
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~---~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 353 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKN---MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI 353 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc
Confidence 79987 89999999997333332 468899999999999999999999999966664
No 198
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.16 E-value=0.29 Score=41.22 Aligned_cols=80 Identities=11% Similarity=0.034 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHH
Q 023865 167 TAQLMFELGQKAYGKGM---YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRR 243 (276)
Q Consensus 167 ~ae~~yeaG~aALerGd---Y~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRq 243 (276)
+.+..|+-+-......+ -..+|.+||..+...+...+ +-.++||.+|.+.|+..+|..+|..|....|+-.
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~R---dcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~--- 111 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRR---ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK--- 111 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHH---HHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH---
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchh---HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH---
Confidence 45566777766666554 45799999999986655444 6899999999999999999999999998888753
Q ss_pred HHHHHHHhh
Q 023865 244 QAADLRYIL 252 (276)
Q Consensus 244 QAKqLLyIL 252 (276)
||+.|...+
T Consensus 112 QA~~Lk~~I 120 (144)
T 1y8m_A 112 QVGALKSMV 120 (144)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555444
No 199
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=93.03 E-value=0.021 Score=51.91 Aligned_cols=51 Identities=18% Similarity=0.074 Sum_probs=12.3
Q ss_pred HHHHhcCCH---HHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcC-----ChHHHHHHHHHHH
Q 023865 176 QKAYGKGMY---GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN-----RHADCIALYKQLE 233 (276)
Q Consensus 176 ~aALerGdY---~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~G-----q~EkAIALCQ~L~ 233 (276)
...+..|++ .+|+++|++++.. + ..+++.|+.+|...| +.++|+.+|++..
T Consensus 43 ~~y~~~g~~~d~~~A~~~~~~A~~~----~---~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa 101 (452)
T 3e4b_A 43 DIQVGTRDPAQIKQAEATYRAAADT----S---PRAQARLGRLLAAKPGATEAEHHEAESLLKKAF 101 (452)
T ss_dssp -----------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCCCHHHHHHHHHHHHhC----C---HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHH
Confidence 333444444 4555555554432 1 124455555444443 4445555555544
No 200
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.74 E-value=0.25 Score=42.51 Aligned_cols=63 Identities=8% Similarity=0.019 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCC-----chHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF-----FGGEIQIWLAMAYEANNRHADCIALYKQL 232 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~-----lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L 232 (276)
..++....++++|.|+.|+-+...+++..+.+.. .--++++|++.||-+.|+.-+|...|++-
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4678899999999999999999998876643332 23478999999999999999999999883
No 201
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.66 E-value=0.28 Score=48.72 Aligned_cols=73 Identities=18% Similarity=0.055 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRY 250 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLy 250 (276)
....+ .||..|+|..|..+|..... ....-.+.++|+++|+.+.|+.++|..+|+.+. ++ ..---.-|.+.|.
T Consensus 289 e~~~r-~Alr~~d~~~a~~~~~~l~~----~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a-~~-~~fYg~lAa~~Lg 361 (618)
T 1qsa_A 289 ERRVR-MALGTGDRRGLNTWLARLPM----EAKEKDEWRYWQADLLLERGREAEAKEILHQLM-QQ-RGFYPMVAAQRIG 361 (618)
T ss_dssp HHHHH-HHHHHTCHHHHHHHHHHSCT----TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TS-CSHHHHHHHHHTT
T ss_pred HHHHH-HHHHCCCHHHHHHHHHHccc----cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh-cC-CChHHHHHHHHcC
Confidence 35555 58899999999999987443 222346799999999999999999999999999 54 4444555555553
No 202
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.41 E-value=1.1 Score=41.08 Aligned_cols=74 Identities=23% Similarity=0.131 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCch------------------HHHHHHHHHHHHHcCChHHHHHH
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG------------------GEIQIWLAMAYEANNRHADCIAL 228 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lG------------------GEAQmwLAtAYqa~Gq~EkAIAL 228 (276)
.++..+..|..+...|+...|++.|+.|+......--.| ..+...++.++.+.|+..+|+..
T Consensus 114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~ 193 (388)
T 2ff4_A 114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE 193 (388)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 456678888899999999999999999998875432111 14455678899999999999999
Q ss_pred HHHHHHhCCCHH
Q 023865 229 YKQLESNHPSKN 240 (276)
Q Consensus 229 CQ~L~~~HPd~q 240 (276)
|+.+...||-.+
T Consensus 194 l~~~~~~~P~~E 205 (388)
T 2ff4_A 194 LEALTFEHPYRE 205 (388)
T ss_dssp HHHHHHHSTTCH
T ss_pred HHHHHHhCCCCH
Confidence 999998999655
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=90.47 E-value=1.9 Score=32.80 Aligned_cols=63 Identities=13% Similarity=0.094 Sum_probs=51.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCHHHHH
Q 023865 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHPSKNIRR 243 (276)
Q Consensus 174 aG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa----~Gq~EkAIALCQ~L~~~HPd~qVRq 243 (276)
.|..-+..+.+.+|+.+|++++.. . ...+++.|+..|.. .++.++|+.+|++-. ...++...-
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~---g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~~g~~~a~~ 97 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL---N---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKAC-GLNDQDGCL 97 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH-HTTCHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC---C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH-cCCCHHHHH
Confidence 666667778899999999999985 2 24799999999998 899999999999998 566665443
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=90.41 E-value=0.44 Score=33.81 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 206 GEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 206 GEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
..+.+.|+.+|...|+.++|+..|++.+...|+.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 40 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDY 40 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 4689999999999999999999999999888863
No 205
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=88.32 E-value=1.3 Score=39.59 Aligned_cols=69 Identities=12% Similarity=0.066 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhcCCHH-HHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCHH
Q 023865 168 AQLMFELGQKAYGKGMYG-RAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN--RHADCIALYKQLESNHPSKN 240 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~-qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~G--q~EkAIALCQ~L~~~HPd~q 240 (276)
+...+..-.+.+.+|.|+ +|+...+.++...|.+.. +...-..+....| +.++|+.+|..++..+|..-
T Consensus 32 y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~t----aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y 103 (306)
T 3dra_A 32 YKQIMGLLLALMKAEEYSERALHITELGINELASHYT----IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY 103 (306)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHH----HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH
Confidence 445566666778889995 899999999998888776 8888889999999 99999999999998888753
No 206
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=88.25 E-value=2.3 Score=38.48 Aligned_cols=65 Identities=11% Similarity=-0.057 Sum_probs=44.4
Q ss_pred HHHHHHHHhc----CCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHH-H--HHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023865 172 FELGQKAYGK----GMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMA-Y--EANNRHADCIALYKQLESNHPSKNIRRQ 244 (276)
Q Consensus 172 yeaG~aALer----GdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtA-Y--qa~Gq~EkAIALCQ~L~~~HPd~qVRqQ 244 (276)
+..|..-... ++|.+|+.+|++++ + +. ..+++.|+.. | ...|+.++|+.+|++.. ...++...-+
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~-g~---~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa-~~g~~~A~~~ 288 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA---P-GY---PASWVSLAQLLYDFPELGDVEQMMKYLDNGR-AADQPRAELL 288 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG---G-GS---THHHHHHHHHHHHSGGGCCHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc---C-CC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HCCCHHHHHH
Confidence 5555544332 58888888888877 2 22 2588888888 5 57888888888888887 5555554433
No 207
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=87.80 E-value=1.9 Score=39.50 Aligned_cols=22 Identities=9% Similarity=-0.070 Sum_probs=10.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhh
Q 023865 175 GQKAYGKGMYGRAIEFLEGALT 196 (276)
Q Consensus 175 G~aALerGdY~qAIelLE~Al~ 196 (276)
+...+..|+++.|.+.|+.+.+
T Consensus 143 vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 143 IEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHh
Confidence 3444445555555555544433
No 208
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=87.58 E-value=2 Score=39.34 Aligned_cols=74 Identities=8% Similarity=-0.028 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCC----------hHHHHHHHH
Q 023865 162 AERRATAQLMFELGQKAYGKGMYG-RAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR----------HADCIALYK 230 (276)
Q Consensus 162 a~~~e~ae~~yeaG~aALerGdY~-qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq----------~EkAIALCQ 230 (276)
+.+...+......-......|.|+ +|+.+++.++...|.+.. |..+--.+....|+ .++++.+|.
T Consensus 23 ~~ki~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~yt----aWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~ 98 (331)
T 3dss_A 23 EQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFAT----LWNCRREVLQHLETEKSPEESAALVKAELGFLE 98 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHH----HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHH----HHHHHHHHHHHhcccccchhhhHHHHHHHHHHH
Confidence 334455556666666677899999 799999999997776655 66665566666555 589999999
Q ss_pred HHHHhCCCH
Q 023865 231 QLESNHPSK 239 (276)
Q Consensus 231 ~L~~~HPd~ 239 (276)
.+...||..
T Consensus 99 ~~L~~~PKn 107 (331)
T 3dss_A 99 SCLRVNPKS 107 (331)
T ss_dssp HHHHHCTTC
T ss_pred HHHHhCCCC
Confidence 999888843
No 209
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=87.31 E-value=1.1 Score=44.46 Aligned_cols=54 Identities=20% Similarity=0.267 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADC 225 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkA 225 (276)
+...++.|+.||..|+|+-|.+++..++...|.+. +|+.++|.||...|...+.
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~----~a~~l~a~~~~~l~~~~~~ 502 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNR----AARELQADALEQLGYQAEN 502 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHHHHhccC
Confidence 67899999999999999999999999998776665 4999999999998865543
No 210
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=86.80 E-value=6.6 Score=36.45 Aligned_cols=68 Identities=16% Similarity=0.026 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCC----H-----HHHHHHHHHHHh
Q 023865 182 GMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN-NRHADCIALYKQLESNHPS----K-----NIRRQAADLRYI 251 (276)
Q Consensus 182 GdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~-Gq~EkAIALCQ~L~~~HPd----~-----qVRqQAKqLLyI 251 (276)
|+...|.++|++|+++.|.... .+.+..+..|... |+.+.|.+++++-..--|. . --|++|+.||..
T Consensus 218 Gd~ekA~~~ferAL~LnP~~~i---d~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q~eA~~LL~~ 294 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYCSAHDP---DHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILSQKRARWLKAH 294 (301)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCS---HHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCCc---hHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHHHHHHHH
Confidence 9999999999999998876544 4999999999885 9999999999998833333 2 367888888865
Q ss_pred h
Q 023865 252 L 252 (276)
Q Consensus 252 L 252 (276)
+
T Consensus 295 ~ 295 (301)
T 3u64_A 295 V 295 (301)
T ss_dssp H
T ss_pred h
Confidence 4
No 211
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=86.53 E-value=0.4 Score=40.12 Aligned_cols=55 Identities=9% Similarity=0.060 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHhCCCHH
Q 023865 182 GMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRH----------ADCIALYKQLESNHPSKN 240 (276)
Q Consensus 182 GdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~----------EkAIALCQ~L~~~HPd~q 240 (276)
++|.+|++.++.+++..|.+. ++.+.+..+|...|+. ++||+.|++-++-.|+.-
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~a----ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~ 80 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDA----DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD 80 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcH
Confidence 568899999999999776654 4888888899998875 599999999998888754
No 212
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=85.20 E-value=2.2 Score=47.45 Aligned_cols=75 Identities=17% Similarity=0.128 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023865 156 KVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (276)
Q Consensus 156 ~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~ 235 (276)
+.|.+-+++......-++-|.+-+..|+|.+||..++++ +. ....+-++.+|+..|+.++||..++.-.+.
T Consensus 1093 drAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD---~say~eVa~~~~~lGkyEEAIeyL~mArk~ 1163 (1630)
T 1xi4_A 1093 DRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DD---PSSYMEVVQAANTSGNWEELVKYLQMARKK 1163 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 346666677777788889999999999999999999885 21 236677899999999999999999875544
Q ss_pred CCCH
Q 023865 236 HPSK 239 (276)
Q Consensus 236 HPd~ 239 (276)
-|++
T Consensus 1164 ~~e~ 1167 (1630)
T 1xi4_A 1164 ARES 1167 (1630)
T ss_pred cccc
Confidence 4444
No 213
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.94 E-value=3.3 Score=34.06 Aligned_cols=67 Identities=15% Similarity=0.166 Sum_probs=58.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 023865 176 QKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (276)
Q Consensus 176 ~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyIL 252 (276)
...+.||+|..|..++++.| ++ -+-=|+|.|--..|-..++-..--.|. ...+|+.++.|..+...+
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c------~p---dlepw~ALce~rlGl~s~le~rL~~la-~sg~p~~q~Fa~g~req~ 114 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLA------YP---DLEPWLALCEYRLGLGSALESRLNRLA-RSQDPRIQTFVNGMREQL 114 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSC------CG---GGHHHHHHHHHHHTCHHHHHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCC------Cc---hHHHHHHHHHHhcccHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHh
Confidence 45678999999999999977 33 267799999999999999999998898 899999999999887654
No 214
>2xrh_A Protein HP0721; unknown function; 1.50A {Helicobacter pylori}
Probab=82.40 E-value=5.6 Score=32.00 Aligned_cols=76 Identities=18% Similarity=0.326 Sum_probs=43.7
Q ss_pred cccccCCCCCCccc--CCCCCCCcccccHHHHHHHHHHHH--HHHHHHHHHHHH-HhhhhhccCcchhhhhhhHHHHHHH
Q 023865 75 VNAVDFDAGSSDEE--NGNGNGEKEEYDWEKEMRRRVKEI--EEMRELEKKAEE-LQSKAEEDDSESEAKEETEEEKRMR 149 (276)
Q Consensus 75 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r 149 (276)
.||.||+.-+.+|= --|--.|.++.|+..|+.+|++.. ++.+..-++..+ +++-++-=. -+.=.++|.-
T Consensus 6 ~~a~DFSk~Sd~ELl~mAG~V~p~~~~dY~mEv~KR~~~M~~k~~k~F~~~~~~~~~kN~~kMS------~ke~~~~r~a 79 (100)
T 2xrh_A 6 TMAKDFSKTSDEDLAKMAGVVAPQDIVDYTKELKKRMEKMPEDKRKAFHKQLHEYATKNTDKMT------VADFEARQKA 79 (100)
T ss_dssp CCCCSSTTSCHHHHHHTTTTSCGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTSC------HHHHHHHHHH
T ss_pred hcccchhhcCHHHHHHHHCcCChhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhCC------HHHHHHHHHH
Confidence 58999985544443 345556778899999999999864 333333333322 223222222 2222455566
Q ss_pred HHHHHHH
Q 023865 150 VRRELEK 156 (276)
Q Consensus 150 v~~~L~~ 156 (276)
|+..|++
T Consensus 80 I~eal~k 86 (100)
T 2xrh_A 80 VKEALKK 86 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666655
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=82.28 E-value=1 Score=41.86 Aligned_cols=80 Identities=14% Similarity=0.011 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhCC--------CCCC-chHHHHH--------HHHHHHHHcCChHHHHHHHHHHH-
Q 023865 172 FELGQKAYGKGMYGRAIEFLEGALTIIP--------RPTF-FGGEIQI--------WLAMAYEANNRHADCIALYKQLE- 233 (276)
Q Consensus 172 yeaG~aALerGdY~qAIelLE~Al~~~~--------~nS~-lGGEAQm--------wLAtAYqa~Gq~EkAIALCQ~L~- 233 (276)
-+.|..|+++|++..|+..|..+-.... .+.. +.--+.+ .-..+|...|+.++|+.+|+.+-
T Consensus 685 ~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 685 RALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 4678888888888888888776421110 0000 0000111 12446777888888888887653
Q ss_pred --------HhCCCHH------HHHHHHHHHHh
Q 023865 234 --------SNHPSKN------IRRQAADLRYI 251 (276)
Q Consensus 234 --------~~HPd~q------VRqQAKqLLyI 251 (276)
++|..++ +++||+.|...
T Consensus 765 ~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~ 796 (814)
T 3mkq_A 765 FSEAAFLGSTYGLGDNEVNDIVTKWKENLILN 796 (814)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHHHHhc
Confidence 2344344 56777777544
No 216
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.52 E-value=3.1 Score=34.14 Aligned_cols=67 Identities=18% Similarity=0.172 Sum_probs=58.1
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 023865 176 QKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (276)
Q Consensus 176 ~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyIL 252 (276)
...+.||+|..|..++++.| ++ -+-=|+|.|--..|-..++-..--.|. ...+|+.++.|..+...+
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c------~p---dlepw~ALce~rlGl~s~le~rL~~la-~sg~p~~q~Fa~g~req~ 113 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNP------WP---ALEPWFALCEWHLGLGAALDRRLAGLG-GSSDPALADFAAGMRAQV 113 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCC------CG---GGHHHHHHHHHHTTCHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCC------Cc---hHHHHHHHHHHhcccHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHh
Confidence 45678999999999999976 33 267799999999999999999998998 899999999999887654
No 217
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=80.66 E-value=2.8 Score=40.24 Aligned_cols=68 Identities=9% Similarity=-0.033 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhcCCHH-HHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhC
Q 023865 168 AQLMFELGQKAYGKGMYG-RAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR----------HADCIALYKQLESNH 236 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~-qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq----------~EkAIALCQ~L~~~H 236 (276)
+........+-...|.|. +|++.++.++...|.+.. |..+-..++...|+ .++|+++|..++..+
T Consensus 28 y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~t----aW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~ 103 (567)
T 1dce_A 28 YQSATQAVFQKRQAGELDESVLELTSQILGANPDFAT----LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 103 (567)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHH----HHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC
Confidence 444444555556778776 669999999997777665 88888899999999 899999999999888
Q ss_pred CCH
Q 023865 237 PSK 239 (276)
Q Consensus 237 Pd~ 239 (276)
|..
T Consensus 104 pK~ 106 (567)
T 1dce_A 104 PKS 106 (567)
T ss_dssp TTC
T ss_pred CCC
Confidence 864
No 218
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.52 E-value=5.7 Score=36.45 Aligned_cols=66 Identities=14% Similarity=0.084 Sum_probs=57.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHH
Q 023865 176 QKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQA 245 (276)
Q Consensus 176 ~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQA 245 (276)
...|..|+.++||+.++..+...|.+.. .+..|+.-|+=.|+.++|..=++.+..-+|.....-+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~----~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~ 70 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDAS----LRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQ 70 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 4678999999999999999997776665 89999999999999999999999999777777665443
No 219
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=79.17 E-value=8.1 Score=32.73 Aligned_cols=84 Identities=13% Similarity=0.041 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC--CCchHHHHHH-HHHH--HHHcCChHHHHHHHHHHHH---hCCC
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIW-LAMA--YEANNRHADCIALYKQLES---NHPS 238 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~n--S~lGGEAQmw-LAtA--Yqa~Gq~EkAIALCQ~L~~---~HPd 238 (276)
+....|..|+..|..|+|-.|=+.||.+....+.. .+.--+..|+ +|.| ....|+..-|..++++-.. .+|.
T Consensus 31 ~~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~~ 110 (161)
T 2ijq_A 31 TLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPN 110 (161)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCT
T ss_pred CccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence 35567999999999999999999999999876655 3333455555 5544 4567999999999986542 3443
Q ss_pred -------HHHHHHHHHHHH
Q 023865 239 -------KNIRRQAADLRY 250 (276)
Q Consensus 239 -------~qVRqQAKqLLy 250 (276)
..++.+++.++.
T Consensus 111 ~~~GIDv~~L~~~~~~~l~ 129 (161)
T 2ijq_A 111 DYYGVDLLDVRTTVTNALS 129 (161)
T ss_dssp TGGGBCHHHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHhh
Confidence 245777777754
No 220
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=78.68 E-value=0.49 Score=47.42 Aligned_cols=54 Identities=19% Similarity=0.110 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADC 225 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkA 225 (276)
+...++.++++|.+|+|+-|.+++..++...|.+.. |+.++|.||...|...+.
T Consensus 461 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~----ar~l~a~~~~~l~~~~~~ 514 (668)
T 2yhe_A 461 ADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKD----ARALQADAMEQLGYQTEN 514 (668)
Confidence 678899999999999999999999999987766665 999999999999987765
No 221
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=76.91 E-value=7.6 Score=35.91 Aligned_cols=60 Identities=3% Similarity=-0.133 Sum_probs=33.0
Q ss_pred HHHHHhcC-CHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHc-C-ChHHHHHHHHHHHHhCCC
Q 023865 175 GQKAYGKG-MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN-N-RHADCIALYKQLESNHPS 238 (276)
Q Consensus 175 G~aALerG-dY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~-G-q~EkAIALCQ~L~~~HPd 238 (276)
|..-..-| .|.+++.+++.++...|.+.. +...-..++... | +.++++++|.++.+.+|.
T Consensus 95 ~~iL~~l~~~l~eEL~~~~~~L~~nPKny~----aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk 157 (349)
T 3q7a_A 95 FSLLTSLNKSLEDELRLMNEFAVQNLKSYQ----VWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK 157 (349)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTCCCHH----HHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Confidence 44444445 466666666666664444333 444444555554 5 666666666666655553
No 222
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=75.31 E-value=40 Score=31.74 Aligned_cols=73 Identities=12% Similarity=0.089 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCC--CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH---Hh-CCCHHHHH
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPR--PTFFGGEIQIWLAMAYEANNRHADCIALYKQLE---SN-HPSKNIRR 243 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~--nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~---~~-HPd~qVRq 243 (276)
....|.--|++|+|..|++++......+.. ....=.++++.-+..|...|+..+|.++|..-. .. +|+|.+.-
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 448899999999999999998888876654 234456889999999999999999999886553 12 26665543
No 223
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=74.93 E-value=19 Score=26.90 Aligned_cols=59 Identities=20% Similarity=0.080 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 023865 185 GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYI 251 (276)
Q Consensus 185 ~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyI 251 (276)
..++..|..++... + ..++...+.|....|. .+++.....+. +++++.||..|...|.-
T Consensus 72 ~~a~~~L~~~L~d~---~---~~VR~~A~~aL~~~~~-~~a~~~L~~~l-~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ERAVEPLIKLLEDD---S---GFVRSGAARSLEQIGG-ERVRAAMEKLA-ETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHHHC---C---THHHHHHHHHHHHHCS-HHHHHHHHHHT-TSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHcCC---C---HHHHHHHHHHHHHhCc-HHHHHHHHHHH-hCCCHHHHHHHHHHHHh
Confidence 56788888887621 2 2589999999999996 46777676776 69999999999887753
No 224
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=73.82 E-value=20 Score=31.91 Aligned_cols=66 Identities=9% Similarity=-0.049 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHH----HHc---CChHHHHHHHHHHHHhCCCH
Q 023865 170 LMFELGQKAYGKG--MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAY----EAN---NRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 170 ~~yeaG~aALerG--dY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAY----qa~---Gq~EkAIALCQ~L~~~HPd~ 239 (276)
.=+-.|..-..-| +|.+++.+++.++...|.+.. +...-..++ ... ++.++++.+|.++...+|..
T Consensus 69 aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~----aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn 143 (306)
T 3dra_A 69 IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ----IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN 143 (306)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH----HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH----HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC
Confidence 3344455555566 999999999999998877766 555444444 555 89999999999999888854
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=73.22 E-value=5.7 Score=33.14 Aligned_cols=35 Identities=23% Similarity=0.454 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT 202 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS 202 (276)
..-.|..|..-|..|+|..|..+++.+++..|.+.
T Consensus 71 rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 71 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 45589999999999999999999999999777553
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=72.69 E-value=10 Score=27.34 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF 203 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~ 203 (276)
....+..|...++.|+|..|+.+++.++...|.+..
T Consensus 46 ~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 46 VSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 344577899999999999999999999998777644
No 227
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=70.89 E-value=16 Score=35.06 Aligned_cols=63 Identities=13% Similarity=-0.014 Sum_probs=50.8
Q ss_pred HHHHHHHhcC--CHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCH
Q 023865 173 ELGQKAYGKG--MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN-RHADCIALYKQLESNHPSK 239 (276)
Q Consensus 173 eaG~aALerG--dY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~G-q~EkAIALCQ~L~~~HPd~ 239 (276)
-.|-....-| +|..+++.++++++..+.+.. |...-..++...| ..++|++.|.+.++.+|.-
T Consensus 112 hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~----aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n 177 (567)
T 1dce_A 112 HRCWLLSRLPEPNWARELELCARFLEADERNFH----CWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN 177 (567)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHhhcccccc----HHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC
Confidence 3344455567 779999999999998888765 8888888888899 8999999999998777753
No 228
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=70.67 E-value=13 Score=27.96 Aligned_cols=39 Identities=18% Similarity=0.379 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCc
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF 204 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~l 204 (276)
.-+-...+.|+..+.+|++..|+.+|-.|+..++....+
T Consensus 15 ~~Fl~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 15 KFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 336677899999999999999999999999977766553
No 229
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=68.92 E-value=13 Score=34.50 Aligned_cols=51 Identities=25% Similarity=0.230 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhhCCCCCCc----hHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023865 184 YGRAIEFLEGALTIIPRPTFF----GGEIQIWLAMAYEANNRHADCIALYKQLES 234 (276)
Q Consensus 184 Y~qAIelLE~Al~~~~~nS~l----GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~ 234 (276)
|.+.|+-|+.|+...|..+.. -+-|+.+||++|.-.|+.++|++.|+.+++
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 678888899998877654322 246899999999999999999999999994
No 230
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=68.81 E-value=18 Score=34.12 Aligned_cols=68 Identities=13% Similarity=0.024 Sum_probs=51.2
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCHHH
Q 023865 171 MFELGQKAY-GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN--HPSKNI 241 (276)
Q Consensus 171 ~yeaG~aAL-erGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~--HPd~qV 241 (276)
.|..-+.+| ..|+...|.++|+.....--..+ ......|+.||...|+.++|..+++.+.+. .|+..+
T Consensus 142 tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd---~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T 212 (501)
T 4g26_A 142 SYGPALFGFCRKGDADKAYEVDAHMVESEVVPE---EPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKST 212 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHH
T ss_pred eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHH
Confidence 466666665 67999999999999775322222 247889999999999999999999998743 455554
No 231
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=68.10 E-value=16 Score=34.36 Aligned_cols=55 Identities=20% Similarity=0.193 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHhhhCCCCC-------CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865 183 MYGRAIEFLEGALTIIPRPT-------FFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (276)
Q Consensus 183 dY~qAIelLE~Al~~~~~nS-------~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (276)
-|.+.|+-|+.|+...|... .--+-|+.+||++|.-.|+.++|++.|+.++..++
T Consensus 173 vy~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~~~ 234 (495)
T 3lew_A 173 VYAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAKDN 234 (495)
T ss_dssp HHHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 36777888888888776431 11246889999999999999999999999996543
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=67.82 E-value=8.6 Score=35.69 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHhCCCH
Q 023865 184 YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN-----NRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 184 Y~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~-----Gq~EkAIALCQ~L~~~HPd~ 239 (276)
..+|...+|+|+++.|..- .|.++.+|.+.|... |+.++|..++++-..-+|+.
T Consensus 179 l~~A~a~lerAleLDP~~~--~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~ 237 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQ--EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH 237 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHH--HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHHhCCCcc--cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC
Confidence 4788899999999776543 477999999999995 99999999999988899964
No 233
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=67.26 E-value=43 Score=31.43 Aligned_cols=82 Identities=13% Similarity=0.040 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCC----chHHH--------------------------------------
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF----FGGEI-------------------------------------- 208 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~----lGGEA-------------------------------------- 208 (276)
.++.|-+++..|.+.+||..|..++...+...- ...++
T Consensus 117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAYF 196 (325)
T 3mv2_A 117 KMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAYF 196 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 466788888888888888888777765543211 11111
Q ss_pred --------------HHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhc
Q 023865 209 --------------QIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQ 253 (276)
Q Consensus 209 --------------QmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILE 253 (276)
+..|-.|| ++++..-|-.+++.|.+..|++.+.+||++++..=|
T Consensus 197 T~c~LQp~H~~LaLr~AM~~a~-K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce 254 (325)
T 3mv2_A 197 TKAKLSPIHRTNALQVAMSQHF-KHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKAD 254 (325)
T ss_dssp GGSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 12222233 456778889999999988899999999999988765
No 234
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=66.51 E-value=11 Score=36.33 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=15.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 023865 173 ELGQKAYGKGMYGRAIEFLEGA 194 (276)
Q Consensus 173 eaG~aALerGdY~qAIelLE~A 194 (276)
..|...+..|+|+.||+.+.++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc
Confidence 4466666777777777777776
No 235
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=63.72 E-value=17 Score=33.74 Aligned_cols=51 Identities=10% Similarity=0.065 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhhhCCCCCCc----hHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023865 184 YGRAIEFLEGALTIIPRPTFF----GGEIQIWLAMAYEANNRHADCIALYKQLES 234 (276)
Q Consensus 184 Y~qAIelLE~Al~~~~~nS~l----GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~ 234 (276)
|.+.|+=|+.|+...+..... -+-|+.+||++|.-.|+.++|++.|+.+++
T Consensus 170 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 677788899998877754322 246899999999999999999999999994
No 236
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=63.53 E-value=18 Score=28.50 Aligned_cols=61 Identities=21% Similarity=0.084 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhc
Q 023865 185 GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQ 253 (276)
Q Consensus 185 ~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILE 253 (276)
..++..|..++.. .+ ..++...+.|....|. ..++.....+. +++++.||..|...|.-+.
T Consensus 142 ~~~~~~L~~~l~d---~~---~~vr~~a~~aL~~~~~-~~~~~~L~~~l-~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 142 ERAVEPLIKALKD---ED---GWVRQSAADALGEIGG-ERVRAAMEKLA-ETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp GGGHHHHHHHTTC---SS---HHHHHHHHHHHHHHCS-HHHHHHHHHHH-HHCCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHcC---CC---HHHHHHHHHHHHHhCc-hhHHHHHHHHH-hCCCHHHHHHHHHHHHhcC
Confidence 3456666665531 11 3577777777777775 56777777777 6788888888888776654
No 237
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=63.50 E-value=20 Score=27.95 Aligned_cols=62 Identities=21% Similarity=0.089 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcC
Q 023865 185 GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQA 254 (276)
Q Consensus 185 ~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILEA 254 (276)
..++..|..++.. . ...++...+.|....|. .+++.....+. ++|++.||..|...|.-|+.
T Consensus 137 ~~~~~~L~~~l~d---~---~~~vr~~A~~aL~~~~~-~~~~~~L~~~l-~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 137 ERAVEPLIKALKD---E---DGWVRQSAADALGEIGG-ERVRAAMEKLA-ETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp GGGHHHHHHHTTC---S---SHHHHHHHHHHHHHHCS-HHHHHHHHHHH-HHCCHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHcC---C---CHHHHHHHHHHHHHhCc-hhHHHHHHHHH-hCCCHHHHHHHHHHHHHHHh
Confidence 3456666655541 1 13577777888877775 45666666666 67888888888888877653
No 238
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=63.40 E-value=20 Score=33.25 Aligned_cols=52 Identities=15% Similarity=0.073 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhhCCCCCCc----hHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023865 184 YGRAIEFLEGALTIIPRPTFF----GGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (276)
Q Consensus 184 Y~qAIelLE~Al~~~~~nS~l----GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~ 235 (276)
|.+.|+-|+.|+...+..... -+-|+.+||++|.-.|+.++|++.|+.+++.
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 777888899998877643222 2468999999999999999999999999954
No 239
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=62.23 E-value=96 Score=28.94 Aligned_cols=82 Identities=15% Similarity=0.142 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCC---C-chHHH--------HH----------------------------
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPT---F-FGGEI--------QI---------------------------- 210 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS---~-lGGEA--------Qm---------------------------- 210 (276)
.++.|-+++..|.+.+||..|..++...+... . ...++ .+
T Consensus 105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELA 184 (320)
T 3mkr_B 105 RLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMA 184 (320)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHH
Confidence 46778889999999999998888887665321 1 11111 11
Q ss_pred -------------------HHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhc
Q 023865 211 -------------------WLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQ 253 (276)
Q Consensus 211 -------------------wLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILE 253 (276)
.|-.|| ++++.--|-.+++.|.+.-|++++.+||++++..=|
T Consensus 185 AYFT~c~Lqp~H~~LaLr~AM~~a~-K~KNy~tAa~fArrLLel~p~~~~~~qArkil~~ce 245 (320)
T 3mkr_B 185 AYFTHSNLQPVHMILVLRTALNLFF-KLKNFRTAAAFARRLLELGPKPEVAQQTRKILSACE 245 (320)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHHHH-HTTBHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHhccCCCcHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 122222 346667788899999988899999999999988764
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=62.04 E-value=10 Score=30.87 Aligned_cols=35 Identities=23% Similarity=0.454 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT 202 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS 202 (276)
-.-.|-.|...|..|+|..|..+++.++...|.+.
T Consensus 74 Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 74 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence 34589999999999999999999999999766554
No 241
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=61.53 E-value=16 Score=40.87 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
..+..|...+..|+|..|+.++..+ .-..-|+.+|...|+.++||..|++-.
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA------------~ny~rLA~tLvkLge~q~AIEaarKA~ 1248 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKAN 1248 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh------------hHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 4667899999999999999999995 267779999999999999999998764
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=61.44 E-value=18 Score=37.10 Aligned_cols=66 Identities=12% Similarity=0.045 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHH
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIR 242 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVR 242 (276)
......+..-+.+|+|.-|+..=.+|+...|..= ..+..||.+|...||.++|+-. |- .||....+
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF----~tW~~La~vYi~l~d~e~ALLt---LN-ScPm~t~~ 403 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSF----ESWYNLARCHIKKEEYEKALFA---IN-SMPRLRKN 403 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH----HHHHHHHHHHHHTTCHHHHHHH---HH-HSCC----
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhh----HHHHHHHHHHHHhccHHHHHHH---Hh-cCCCcccc
Confidence 3555667788899999999999999998655443 4999999999999999999854 55 88865433
No 243
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=60.47 E-value=13 Score=28.41 Aligned_cols=59 Identities=19% Similarity=-0.012 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHH--HHHcCChHHHHHHHHH
Q 023865 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMA--YEANNRHADCIALYKQ 231 (276)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtA--Yqa~Gq~EkAIALCQ~ 231 (276)
.|..|...|..|+|-.|=+.||.+....+...+.--+..|.+|.| ....|+. |..++++
T Consensus 4 ~~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~ 64 (94)
T 2cwy_A 4 DWEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRK 64 (94)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHH
Confidence 477899999999999999999999987643222233444445444 4456666 7777654
No 244
>2hsb_A Hypothetical UPF0332 protein AF0298; DUF103 family, structural genomics, joint center for structu genomics, JCSG; HET: MSE PG4; 1.95A {Archaeoglobus fulgidus}
Probab=59.96 E-value=21 Score=27.03 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023865 163 ERRATAQLMFELGQKAYGKGMYGRAIEFLEGAL 195 (276)
Q Consensus 163 ~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al 195 (276)
..+.+|+..++.+...++.|.|..||-....++
T Consensus 7 ~~l~~A~~~L~~A~~~~~~g~y~~a~~~ay~a~ 39 (126)
T 2hsb_A 7 LRIRKAEKLVQDAKKEFEMGLYERCCSTAYYAM 39 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 467788999999999999999997765444333
No 245
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=59.89 E-value=14 Score=29.72 Aligned_cols=32 Identities=28% Similarity=0.518 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIP 199 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~ 199 (276)
+...+..|...|+-|+|+.|..+|+++.....
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~n~te 84 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKALNLSD 84 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHcccc
Confidence 45677788999999999999999999886443
No 246
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=59.47 E-value=27 Score=32.88 Aligned_cols=60 Identities=8% Similarity=0.010 Sum_probs=46.3
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHhhh-CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023865 172 FELGQKAY-GKGMYGRAIEFLEGALTI-IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (276)
Q Consensus 172 yeaG~aAL-erGdY~qAIelLE~Al~~-~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~ 235 (276)
|..-+.+| ..|++..|+++|+..... ..++ ......|+.+|...|+.++|..+++.+.+.
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd----~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR----LRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc----cceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 44444443 679999999999997653 2222 247788999999999999999999999854
No 247
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=57.95 E-value=90 Score=26.74 Aligned_cols=62 Identities=19% Similarity=0.193 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHh-------------------------------hhCCCCCCchHHHHHHHHHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGAL-------------------------------TIIPRPTFFGGEIQIWLAMAY 216 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al-------------------------------~~~~~nS~lGGEAQmwLAtAY 216 (276)
.+..+-.+..||=+.+|...|.-|+.+- ..+..+|. -.+++=+-|
T Consensus 8 ~q~a~i~a~~afl~~dYs~VI~~L~~~~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSd----e~yL~YWIy 83 (161)
T 2ynq_A 8 KQEAYIQSTELFLQNKYSDVITTLEDYAPEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKTD----EQYMLYWIY 83 (161)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHTTSCGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSC----HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHhcCChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCC----HHHHHHHHH
Confidence 4567788999999999999999887632 11112222 344555567
Q ss_pred HHcCChHHHHHHHHHHH
Q 023865 217 EANNRHADCIALYKQLE 233 (276)
Q Consensus 217 qa~Gq~EkAIALCQ~L~ 233 (276)
-|.|+.++|+.+.+.|-
T Consensus 84 iGRg~~~eAlDiA~~L~ 100 (161)
T 2ynq_A 84 IGRSQSEEALELARTIE 100 (161)
T ss_dssp HHHTCHHHHHHHHHHHT
T ss_pred HcCCchHHHHHHHHhcC
Confidence 78999999999999997
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.30 E-value=1e+02 Score=28.71 Aligned_cols=76 Identities=9% Similarity=-0.041 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCC--chHHHHHHHHHHHHHcCChHHHHHHHHHHH----HhCCCHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF--FGGEIQIWLAMAYEANNRHADCIALYKQLE----SNHPSKNI 241 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~--lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~----~~HPd~qV 241 (276)
+......+..-+++|+|..|..+|....-.+-...+ .=.++++..++-|-..|+..+|..+++++. ..++++.+
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l 216 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL 216 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence 334455677788899999999999997744332222 224788888999999999999999999853 24455655
Q ss_pred HH
Q 023865 242 RR 243 (276)
Q Consensus 242 Rq 243 (276)
+-
T Consensus 217 k~ 218 (445)
T 4b4t_P 217 KL 218 (445)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 249
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=56.96 E-value=5.3 Score=38.63 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
.-...|...+..|.|..|+.++..+ .-..-||.+|...|+.+.|+..|++..
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a------------~n~~~LA~~L~~Lg~yq~AVea~~KA~ 175 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKAN 175 (449)
T ss_dssp -------------CTTTHHHHHHHT------------TCHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh------------hhHHHHHHHHHHhccHHHHHHHHHHcC
Confidence 5678899999999999999999986 256778999999999999999999873
No 250
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=56.82 E-value=49 Score=29.81 Aligned_cols=73 Identities=19% Similarity=0.089 Sum_probs=49.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 023865 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (276)
Q Consensus 175 G~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyIL 252 (276)
|-.-+.+|-...=|..|++-+..... |-+-....|..+.+..+.+..+++.+.|. +|+.-++|-+|-.+|.-+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~----gf~~~~~~a~~~~~~~~~~~~~~la~~L~-~~~~deVR~~Av~lLg~~ 98 (240)
T 3l9t_A 26 GGQQMGRGSMKQYVARLEKDFSLIEH----GFKEEEQRALTDYKSNDGEYIKKLAFLAY-QSDVYQVRMYAVFLFGYL 98 (240)
T ss_dssp --------CHHHHHHHHHHHHTC---------CHHHHHHHHHHHHSCHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHT
T ss_pred chhhhhhhHHHHHHHHHHHHHHHhhc----ccHHHHHHHHHHHHhCCHHHHHHHHHHHH-hCcchHHHHHHHHHHHhc
Confidence 44556777777778888776764443 33477888888888888999999999998 899889999999887766
No 251
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=56.31 E-value=17 Score=34.16 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhhhCCCCCCc----hHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 184 YGRAIEFLEGALTIIPRPTFF----GGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 184 Y~qAIelLE~Al~~~~~nS~l----GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
|.+.|+-|+.|+...|..+.. -+-|..+||.+|.-.|+.++|++.|+.++
T Consensus 154 y~~I~~DL~~A~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~A~~~a~~vi 207 (481)
T 3jq1_A 154 WAQAKEDLKTAASLLPITNKIGKPTQGAAYAALGKIYVYEENWQEAINVLEPLT 207 (481)
T ss_dssp HHHHHHHHHHHHHHSCSSCSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 677788888888877643222 23688999999999999999999999998
No 252
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=55.90 E-value=26 Score=32.66 Aligned_cols=52 Identities=13% Similarity=-0.092 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhhhCCCCC---C----------------chHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023865 184 YGRAIEFLEGALTIIPRPT---F----------------FGGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (276)
Q Consensus 184 Y~qAIelLE~Al~~~~~nS---~----------------lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~ 235 (276)
|...|+-|+.|+...|... . --+-|+.+||++|.-.|+.++|++.|+.+++.
T Consensus 156 y~~I~~DL~~A~~~Lp~~~~~~~~~~~~~~~~~~~~~r~tk~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 156 LSYAKAELLTAIEDLPYQYGTQTNLYYGSYGAQWQGKLFNKLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHHCCSSCCCSSSCBTTBCGGGGTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCccccccccccccccccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 6677777888888776422 1 12468999999999999999999999999953
No 253
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=55.42 E-value=33 Score=29.26 Aligned_cols=37 Identities=19% Similarity=0.088 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023865 157 VAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEG 193 (276)
Q Consensus 157 ~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~ 193 (276)
+|.+.+..+..-..=-+.|..||.+|++.-|..-|.+
T Consensus 23 ~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 23 AALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4444455444444556679999999999999887666
No 254
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=55.24 E-value=18 Score=28.45 Aligned_cols=37 Identities=19% Similarity=0.385 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCC
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF 203 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~ 203 (276)
-+-...+.|+..+.+|++..||.+|-.|+..++....
T Consensus 19 ~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~ 55 (95)
T 1om2_A 19 FFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 55 (95)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 3666788999999999999999999999987765544
No 255
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=54.97 E-value=1.3e+02 Score=27.55 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=32.0
Q ss_pred HHHHHHHHH-HHHhcCCHHHHHHHHHHHhhh--CCCCCCchHHHHHHHHHHHHHcCCh
Q 023865 168 AQLMFELGQ-KAYGKGMYGRAIEFLEGALTI--IPRPTFFGGEIQIWLAMAYEANNRH 222 (276)
Q Consensus 168 ae~~yeaG~-aALerGdY~qAIelLE~Al~~--~~~nS~lGGEAQmwLAtAYqa~Gq~ 222 (276)
|.++|.+-- .-..+++|.+||++|...... .......|+..-++|+.+|...+-.
T Consensus 32 AhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~ 89 (312)
T 2wpv_A 32 AHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVK 89 (312)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCC
Confidence 444444422 334567888888887665532 1244555666667777777776543
No 256
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=54.33 E-value=32 Score=32.25 Aligned_cols=53 Identities=11% Similarity=0.035 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhhCCCCC---------CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 023865 184 YGRAIEFLEGALTIIPRPT---------FFGGEIQIWLAMAYEANNRHADCIALYKQLESNH 236 (276)
Q Consensus 184 Y~qAIelLE~Al~~~~~nS---------~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H 236 (276)
|.+.|+-|+.|+...+..+ .--+-|+.+||++|.-.|+.++|++.|+.+++.+
T Consensus 160 y~~I~~DL~~A~~~L~~~~~~~~~~~gr~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~~ 221 (460)
T 3snx_A 160 YQQIFDDLNLAQDYLTNYVRKGDGQKFKPNTDVVNGLMARAYLLTGQWGEAAKAAEAARKGY 221 (460)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCSGGGTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhcccccCCccccCcccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 6777777888877664321 1134689999999999999999999999999544
No 257
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=54.14 E-value=34 Score=32.28 Aligned_cols=51 Identities=18% Similarity=0.145 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhhhCCCC---C----CchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023865 184 YGRAIEFLEGALTIIPRP---T----FFGGEIQIWLAMAYEANNRHADCIALYKQLES 234 (276)
Q Consensus 184 Y~qAIelLE~Al~~~~~n---S----~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~ 234 (276)
|...|+-|+.|+...|.. + .--+-|+.+||.+|.-.|+.++|++.|+.+++
T Consensus 153 ~~~I~~dL~~A~~~Lp~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~ 210 (517)
T 3qnk_A 153 YDFILEDLKKATEMLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKSCAEVYK 210 (517)
T ss_dssp HHHHHHHHHHHHHHSCSCCCSTTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCccccCCcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777788888777642 1 11246899999999999999999999999993
No 258
>3jys_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 2.00A {Bacteroides vulgatus atcc 8482}
Probab=53.63 E-value=29 Score=32.83 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHhhhCCCCCCc-----hHHHHHHHHHHHH------HcCChHHHHHHHHHHHH
Q 023865 183 MYGRAIEFLEGALTIIPRPTFF-----GGEIQIWLAMAYE------ANNRHADCIALYKQLES 234 (276)
Q Consensus 183 dY~qAIelLE~Al~~~~~nS~l-----GGEAQmwLAtAYq------a~Gq~EkAIALCQ~L~~ 234 (276)
-|...|+-|+.|+...|..... -+-|+.+||.+|. +.++.++|++.|+.+++
T Consensus 160 vy~~I~~DL~~A~~~Lp~~~~~~gr~tk~aA~allarvyL~~~~y~~~~~~~~A~~~a~~vi~ 222 (499)
T 3jys_A 160 LFNWIEAELNEIKPNLPSPRSEYGVADQAVASALLARMYLNAEIYTGKARYTECINACNEVIK 222 (499)
T ss_dssp HHHHHHHHHHHHGGGSCCTTSSTTSCCHHHHHHHHHHHHHTHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCcCHHHHHHHHHHHHHhhhhccChhHHHHHHHHHHHHHh
Confidence 3667777788888777643221 2347778888777 78999999999999993
No 259
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=53.25 E-value=17 Score=36.13 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCCHHHHH-HHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023865 172 FELGQKAYGKGMYGRAI-EFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (276)
Q Consensus 172 yeaG~aALerGdY~qAI-elLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~ 235 (276)
+..+.--...|+...|+ ..|+.|+..+|.+ ..+.+.+|..+...|+.++|..+|..+++.
T Consensus 347 ~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s----~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 347 FNMANYQGEKNTDSTVITKYLKLGQQCIPNS----AVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp HHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34455556778888998 9999999977753 236677788899999999999999999843
No 260
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=52.08 E-value=86 Score=31.15 Aligned_cols=53 Identities=11% Similarity=-0.081 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865 182 GMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (276)
Q Consensus 182 GdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (276)
+++..|-.+||.+++.++.... ..+..+.-....|+.++|.++|+..+...|+
T Consensus 484 ~d~e~Ar~ife~~Lk~~p~~~~----~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFATDGE----YINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred CCHHHHHHHHHHHHHHCCCchH----HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 3467777777777766543321 2222333344566667777777666644553
No 261
>1wol_A ST0689, 122AA long conserved hypothetical protein; alpha helix, loop, unknown function; 1.62A {Sulfolobus tokodaii}
Probab=51.57 E-value=30 Score=26.31 Aligned_cols=34 Identities=18% Similarity=0.080 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 023865 163 ERRATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (276)
Q Consensus 163 ~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~ 196 (276)
..+.+|...++.+...++.|.|..|+=++.++++
T Consensus 6 ~wl~~A~~dL~~A~~~~~~g~y~~a~f~aqQa~E 39 (122)
T 1wol_A 6 DWIKQAERDLEEARYAKSGGYYELACFLSQQCAE 39 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4567889999999999999999987766655443
No 262
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=49.97 E-value=53 Score=30.95 Aligned_cols=25 Identities=4% Similarity=-0.165 Sum_probs=16.3
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCH
Q 023865 215 AYEANNRHADCIALYKQLESNHPSK 239 (276)
Q Consensus 215 AYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (276)
++-..|+.+.|+..+++-..-.|+.
T Consensus 286 ~~l~~gd~d~A~~~l~rAl~Ln~s~ 310 (372)
T 3ly7_A 286 SALVKGKTDESYQAINTGIDLEMSW 310 (372)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCH
Confidence 3334677777777777776666553
No 263
>1ufb_A TT1696 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.90A {Thermus thermophilus} SCOP: a.24.16.3
Probab=49.41 E-value=28 Score=26.50 Aligned_cols=33 Identities=21% Similarity=0.134 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023865 163 ERRATAQLMFELGQKAYGKGMYGRAIEFLEGAL 195 (276)
Q Consensus 163 ~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al 195 (276)
..+.+|...++.+...++.|.|..|+=++.+++
T Consensus 6 ~w~~~A~~~L~~A~~~~~~g~y~~a~f~a~qa~ 38 (127)
T 1ufb_A 6 DWLEQARHNLRHAQGSLGLGDYAWACFAAQQAA 38 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 456788899999999999999987775555544
No 264
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=47.71 E-value=34 Score=26.57 Aligned_cols=43 Identities=12% Similarity=-0.073 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 023865 208 IQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (276)
Q Consensus 208 AQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyIL 252 (276)
++..-+.+....|..+ ++.....+. .+|++.||.+|-..|..+
T Consensus 92 vr~~a~~aL~~~~~~~-~~~~L~~~l-~d~~~~vr~~a~~aL~~~ 134 (201)
T 3ltj_A 92 VRQSAAVALGQIGDER-AVEPLIKAL-KDEDWFVRIAAAFALGEI 134 (201)
T ss_dssp HHHHHHHHHHHHCCGG-GHHHHHHHT-TCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHH-HHHHHHHHH-cCCCHHHHHHHHHHHHHh
Confidence 4444444444444432 222222233 355555555555554444
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.11 E-value=76 Score=29.15 Aligned_cols=76 Identities=14% Similarity=-0.034 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH---HhCCCHHHHH
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE---SNHPSKNIRR 243 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~---~~HPd~qVRq 243 (276)
.+...+..|.--++.|+|..|++.|..+...+... .--..+.+.++..+-..|+...|...+.++. ...+++.++.
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~-~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~ 208 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIST-GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN 208 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC-CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence 34557788888889999999999998877665443 3335677777778888889888888887753 2345665554
No 266
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=45.09 E-value=47 Score=28.30 Aligned_cols=47 Identities=13% Similarity=-0.041 Sum_probs=33.1
Q ss_pred HHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 023865 177 KAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQL 232 (276)
Q Consensus 177 aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L 232 (276)
.|++.|+|..|+++.+.. ++. ..+-.|+.+...+|+++=|+..|+++
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~---~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDS---ITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCH---HHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHh------CCH---HHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 589999999999998764 222 35555666666677777777666654
No 267
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=44.99 E-value=25 Score=34.03 Aligned_cols=73 Identities=11% Similarity=0.069 Sum_probs=46.4
Q ss_pred HhcCCHHHHH---------HHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHHh--CCCHHHH
Q 023865 179 YGKGMYGRAI---------EFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR-----HADCIALYKQLESN--HPSKNIR 242 (276)
Q Consensus 179 LerGdY~qAI---------elLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq-----~EkAIALCQ~L~~~--HPd~qVR 242 (276)
.==|+|+.-+ .+|+......... ...+|.++.+|+.+..- .+.-+.+.+..+ . ++|++||
T Consensus 502 wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~---~~~v~~~~Lta~~Kl~~~~p~~~~~i~~~l~~~~-~~~~~d~evr 577 (621)
T 2vgl_A 502 YILGEFGNLIAGDPRSSPLIQFNLLHSKFHLC---SVPTRALLLSTYIKFVNLFPEVKATIQDVLRSDS-QLKNADVELQ 577 (621)
T ss_dssp HHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTS---CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHSSHH-HHSCSSHHHH
T ss_pred HHhcchHHHhcccCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHh-cCCCCCHHHH
Confidence 4456665543 3455544333322 34688888888776542 233444454445 4 9999999
Q ss_pred HHHHHHHHhhcCC
Q 023865 243 RQAADLRYILQAP 255 (276)
Q Consensus 243 qQAKqLLyILEAP 255 (276)
+.|..++.+|..+
T Consensus 578 dRA~~y~~Ll~~~ 590 (621)
T 2vgl_A 578 QRAVEYLRLSTVA 590 (621)
T ss_dssp HHHHHHHHHHHSS
T ss_pred HHHHHHHHHHccC
Confidence 9999999999865
No 268
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=44.44 E-value=65 Score=29.67 Aligned_cols=59 Identities=15% Similarity=0.095 Sum_probs=38.7
Q ss_pred HHHhcCCH-HHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCH
Q 023865 177 KAYGKGMY-GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN-RHADCIALYKQLESNHPSK 239 (276)
Q Consensus 177 aALerGdY-~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~G-q~EkAIALCQ~L~~~HPd~ 239 (276)
+.+.+|.| .+|+++++.++...|.+.. +...-..++...| ..++++.+|..+...+|..
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~nP~~yt----aWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn 122 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMNPAHYT----VWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS 122 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHhCchhHH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc
Confidence 34444444 3677777777776666554 6666666777777 4777777777777666653
No 269
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=43.54 E-value=1.7e+02 Score=28.27 Aligned_cols=83 Identities=14% Similarity=0.142 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHH-HHHHHHhCCCHHHHHHHHH
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIAL-YKQLESNHPSKNIRRQAAD 247 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIAL-CQ~L~~~HPd~qVRqQAKq 247 (276)
....-.|--|--+.+|+.|..++..|+...|.+.. .+..||.-+...|+.=+|+-. ++.|...+|.+..+..-..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~----~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~ 228 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ----PYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSH----HHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCc----hHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHH
Confidence 35677899999999999999999999997776654 888899888889988887765 5678778999999988888
Q ss_pred HHHh-hcCC
Q 023865 248 LRYI-LQAP 255 (276)
Q Consensus 248 LLyI-LEAP 255 (276)
++.- ++.+
T Consensus 229 ~f~~~~~~~ 237 (497)
T 1ya0_A 229 ALSKALESR 237 (497)
T ss_dssp HHHHHTTSC
T ss_pred HHHHHHhhh
Confidence 7764 4444
No 270
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=43.19 E-value=92 Score=25.32 Aligned_cols=63 Identities=21% Similarity=0.079 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHH
Q 023865 151 RRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYE 217 (276)
Q Consensus 151 ~~~L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYq 217 (276)
+.+++..+.+.=.---.|+..+-.++.+.+.|+|..|-++|+.+-+.. ..+=++|.-|.+...
T Consensus 20 ~eele~~~m~II~~aG~ARS~~~eAl~~Ak~gdfe~A~~~l~eA~e~l----~~AH~~QT~Liq~EA 82 (120)
T 3l8r_A 20 TEELQVAAFEIILNSGNARSIVHEAFDAMREKNYILAEQKLQEANDEL----LKAHQAQTDLLQEYA 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 456777777666666678999999999999999999999999976522 223346666666543
No 271
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=41.71 E-value=47 Score=31.39 Aligned_cols=32 Identities=22% Similarity=0.176 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 023865 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (276)
Q Consensus 165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Al~ 196 (276)
+.++....+.|..|+++||+..|..+|..|.+
T Consensus 379 ~~~~a~~~~~a~~~~~~gd~~~A~~~L~~A~~ 410 (464)
T 4fx5_A 379 QAEMAAAIQEGLDAQAAGDLDTATARLGRAMD 410 (464)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33455577899999999999999999999886
No 272
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=40.91 E-value=51 Score=25.78 Aligned_cols=43 Identities=16% Similarity=0.091 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 023865 208 IQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (276)
Q Consensus 208 AQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyIL 252 (276)
++...+.|.-..|..+ ++.....+. ++|++.||..|-..|..+
T Consensus 128 vr~~a~~aL~~~~~~~-~~~~L~~~l-~d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 128 VRIAAAFALGEIGDER-AVEPLIKAL-KDEDGWVRQSAADALGEI 170 (211)
T ss_dssp HHHHHHHHHHHHCCGG-GHHHHHHHT-TCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHH-HHHHHHHHH-cCCCHHHHHHHHHHHHHh
Confidence 4444444444444322 333333333 344445554444444444
No 273
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=40.77 E-value=51 Score=31.51 Aligned_cols=66 Identities=8% Similarity=0.059 Sum_probs=45.9
Q ss_pred HHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhc-CCCC
Q 023865 187 AIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR-----HADCIALYKQLESNHPSKNIRRQAADLRYILQ-APKL 257 (276)
Q Consensus 187 AIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq-----~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILE-APkL 257 (276)
++.+|+.++... .....++.++++|+.+.+- .+.-..+.+... .++|++||+.|..++.+|. .|.+
T Consensus 510 ~~~~l~~~l~~~----~~~~~vr~~~lta~~Kl~~~~~~~~~~l~~~L~~~~-~~~d~evrdRA~~y~~ll~~~~~~ 581 (618)
T 1w63_A 510 VLDILESVLISN----MSTSVTRGYALTAIMKLSTRFTCTVNRIKKVVSIYG-SSIDVELQQRAVEYNALFKKYDHM 581 (618)
T ss_dssp HHHHHHHHHHST----TCCHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHhcc----CCCHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHcCcHHH
Confidence 567788766533 1234688888888865443 344455556655 7999999999999999975 3444
No 274
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=40.38 E-value=1.1e+02 Score=25.89 Aligned_cols=57 Identities=19% Similarity=0.119 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCC-CchHHHHHHHHHHHHHcCCh
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT-FFGGEIQIWLAMAYEANNRH 222 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS-~lGGEAQmwLAtAYqa~Gq~ 222 (276)
++++=.|=.|.-++-+++|.+|-+.|..|...++..+ ..--.+..+|+-+-.-.|+.
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~i 69 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHM 69 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCC
Confidence 3456678899999999999999999999999888653 22335666777666666664
No 275
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=39.51 E-value=71 Score=30.43 Aligned_cols=51 Identities=10% Similarity=0.117 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhhCCC----C-C----CchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023865 184 YGRAIEFLEGALTIIPR----P-T----FFGGEIQIWLAMAYEANNRHADCIALYKQLES 234 (276)
Q Consensus 184 Y~qAIelLE~Al~~~~~----n-S----~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~ 234 (276)
|...|+-|+.|+...|. . + .--+-|+.+||.+|.-.|+.++|++.|+.+++
T Consensus 167 ~~~I~~DL~~A~~~Lp~~~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~ 226 (528)
T 3i4g_A 167 LKWCVTEFTAAAADLPRFSAIPAGEAGRACKQAALAFLGRTCMLQKDWKSGAKAFHDIME 226 (528)
T ss_dssp HHHHHHHHHHHHHHSCCGGGCCGGGTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccCCcccCCcCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 55556667778776662 1 1 11246889999999999999999999999994
No 276
>1o3u_A Conserved hypothetical protein TM0613; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.75A {Thermotoga maritima} SCOP: a.24.16.3
Probab=39.01 E-value=45 Score=26.13 Aligned_cols=30 Identities=20% Similarity=0.138 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGAL 195 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al 195 (276)
.+|+..++.+..+|+.|.|..|+=...+|+
T Consensus 14 ~~A~~dL~~A~~~l~~g~y~~a~F~aqQA~ 43 (135)
T 1o3u_A 14 DAAKDDLEHAKHDLEHGFYNWACFSSQQAA 43 (135)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 567889999999999999987775555444
No 277
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.48 E-value=1.1e+02 Score=28.54 Aligned_cols=89 Identities=12% Similarity=0.102 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh---hCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCHHH
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALT---IIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH---PSKNI 241 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~---~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H---Pd~qV 241 (276)
.+-.+....-.+.+|||.+|-.++.++.. ..+.+..+-+.....++.-|...++..+|-..|..+..++ .++.-
T Consensus 177 ve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~ 256 (445)
T 4b4t_P 177 IQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAK 256 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHH
Confidence 34456667788999999999999999753 2334455677888999999999999999999999887322 24444
Q ss_pred HHHHHHH--HHhhcCCC
Q 023865 242 RRQAADL--RYILQAPK 256 (276)
Q Consensus 242 RqQAKqL--LyILEAPk 256 (276)
+..|... ++++=+|.
T Consensus 257 ~~~~L~~~v~~~iLa~~ 273 (445)
T 4b4t_P 257 WKPVLSHIVYFLVLSPY 273 (445)
T ss_dssp HHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 4555443 55555654
No 278
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=38.29 E-value=51 Score=26.11 Aligned_cols=33 Identities=24% Similarity=0.083 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 023865 164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (276)
Q Consensus 164 ~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~ 196 (276)
++..|+..|..+..|+..++|..|-.+.|++.-
T Consensus 30 El~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe~ 62 (98)
T 4fm3_A 30 ELKLAQDKYAAAQIAMTAESYKKARLLAEQAEL 62 (98)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 577888999999999999999999999999764
No 279
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=38.29 E-value=44 Score=25.02 Aligned_cols=30 Identities=23% Similarity=0.059 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~ 196 (276)
.|......|...=..|+|.+|+.++..+++
T Consensus 18 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 18 MARKYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344555666666777777777776666554
No 280
>3ckc_A SUSD; TPR repeat, carbohydrate binding, starch binding, sugar BIND protein; HET: MES; 1.50A {Bacteroides thetaiotaomicron} SCOP: a.118.8.6 PDB: 3ck8_A* 3ck9_A* 3ckb_A* 3ck7_A*
Probab=37.71 E-value=78 Score=29.18 Aligned_cols=51 Identities=14% Similarity=0.029 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhhhCCCC--CCc----hHHHHHHHHHHHHH------cCChHHHHHHHHHHHH
Q 023865 184 YGRAIEFLEGALTIIPRP--TFF----GGEIQIWLAMAYEA------NNRHADCIALYKQLES 234 (276)
Q Consensus 184 Y~qAIelLE~Al~~~~~n--S~l----GGEAQmwLAtAYqa------~Gq~EkAIALCQ~L~~ 234 (276)
|.+.|+-|+.|+...|.. +.. -+-|+.+||++|.- .++.++|++.|+.+++
T Consensus 169 y~~I~~DL~~A~~~Lp~~~~~~~gr~tk~aA~allArvyL~~~~~~~~~~~~~A~~~a~~vi~ 231 (527)
T 3ckc_A 169 YTYIQNELNEIEADMYEPRQAPFGRADKAANWLLRARLYLNAGVYTGQTDYAKAEEYASKVIG 231 (527)
T ss_dssp HHHHHHHHHHHGGGSCCTTCSCTTSCCHHHHHHHHHHHHHTHHHHHSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCccCCCCCCCcHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHh
Confidence 567778888888776642 111 24577777777764 4899999999999993
No 281
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=37.62 E-value=46 Score=24.68 Aligned_cols=31 Identities=26% Similarity=0.230 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~ 196 (276)
..|......|...=..|+|.+|+.++..+++
T Consensus 9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 9 DMARKYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3455666677777778888888877777665
No 282
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=37.38 E-value=54 Score=24.29 Aligned_cols=59 Identities=17% Similarity=-0.009 Sum_probs=42.6
Q ss_pred HHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcC
Q 023865 188 IEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQA 254 (276)
Q Consensus 188 IelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILEA 254 (276)
+..|..++.. .+ ..++...+.|.-..|... |+.....+. ++|++.||..|-..|.-+-.
T Consensus 44 ~~~L~~~L~d---~~---~~vR~~A~~aL~~~~~~~-a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~ 102 (131)
T 1te4_A 44 FEPLLESLSN---ED---WRIRGAAAWIIGNFQDER-AVEPLIKLL-EDDSGFVRSGAARSLEQIGG 102 (131)
T ss_dssp HHHHHHGGGC---SC---HHHHHHHHHHHGGGCSHH-HHHHHHHHH-HHCCTHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHcC---CC---HHHHHHHHHHHHhcCCHH-HHHHHHHHH-cCCCHHHHHHHHHHHHHhCc
Confidence 5666666551 22 369999999999999754 555555555 58999999999998877654
No 283
>2qf9_A Putative secreted protein; structural genomics, DUF305, Q8CK01, PSI-2, protein structure initiative; HET: MSE; 1.69A {Streptomyces coelicolor A3}
Probab=36.67 E-value=34 Score=28.70 Aligned_cols=32 Identities=13% Similarity=0.008 Sum_probs=24.9
Q ss_pred ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 023865 221 RHADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (276)
Q Consensus 221 q~EkAIALCQ~L~~~HPd~qVRqQAKqLLyIL 252 (276)
-++.||.+++.....-.||+++.+|+.++...
T Consensus 123 HH~~AI~ma~~~~~~g~dp~lk~lA~~ii~~Q 154 (179)
T 2qf9_A 123 HHRGGVHMAKGCVERCTVGVEKRLARGMVESQ 154 (179)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 46788888888776778888888888876543
No 284
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=34.22 E-value=2.9e+02 Score=25.68 Aligned_cols=43 Identities=14% Similarity=0.275 Sum_probs=27.8
Q ss_pred HHhcCCHHHHHHHHHHHhhh-CC-CCCCchHHHHHHHHHHHHHcC
Q 023865 178 AYGKGMYGRAIEFLEGALTI-IP-RPTFFGGEIQIWLAMAYEANN 220 (276)
Q Consensus 178 ALerGdY~qAIelLE~Al~~-~~-~nS~lGGEAQmwLAtAYqa~G 220 (276)
-+.+++|.+||++|-..... .. .....|+..-++|+.+|...|
T Consensus 45 y~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~ 89 (336)
T 3lpz_A 45 YSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAG 89 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC
Confidence 35678888888877655432 22 335556677777777777766
No 285
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=33.88 E-value=1.2e+02 Score=24.66 Aligned_cols=46 Identities=15% Similarity=0.240 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhc
Q 023865 207 EIQIWLAMAYEANN-RHADCIALYKQLESNHPSKNIRRQAADLRYILQ 253 (276)
Q Consensus 207 EAQmwLAtAYqa~G-q~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILE 253 (276)
.++.+.+.|....| ....++.....+. +++++.||..|-..|..+-
T Consensus 174 ~vr~~a~~aL~~~~~~~~~~~~~L~~~l-~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 174 DVRNWAAFAININKYDNSDIRDCFVEML-QDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhC
Confidence 46666666666655 2445555555555 5777777777777666554
No 286
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=33.87 E-value=1.6e+02 Score=22.59 Aligned_cols=48 Identities=10% Similarity=-0.001 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 023865 144 EEKRMRVRRELEKVAK-----EQAERRATAQLMFELGQKAYGKGMYGRAIEFL 191 (276)
Q Consensus 144 ~~~~~rv~~~L~~~a~-----~~a~~~e~ae~~yeaG~aALerGdY~qAIelL 191 (276)
+.|-..+++-|++.-. ....-++-|+..++.|..-|++|||-.|+.-+
T Consensus 10 ~kYi~~leeaL~~i~~~~l~~~a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~i 62 (87)
T 2pmr_A 10 EKDLELLEKNLMEMKSIKLSDDEEAVVERALNYRDDSVYYLEKGDHITSFGCI 62 (87)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4444555555554421 22345567889999999999999999998643
No 287
>3ihv_A SUSD homolog; NP_813570.1, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=33.00 E-value=78 Score=29.71 Aligned_cols=51 Identities=20% Similarity=0.090 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhhCCCCCC---ch--------HHHHHHHHHHHHHc--------CChHHHHHHHHHHHH
Q 023865 184 YGRAIEFLEGALTIIPRPTF---FG--------GEIQIWLAMAYEAN--------NRHADCIALYKQLES 234 (276)
Q Consensus 184 Y~qAIelLE~Al~~~~~nS~---lG--------GEAQmwLAtAYqa~--------Gq~EkAIALCQ~L~~ 234 (276)
|.+.|+-|+.|+...|.... .| +-|+.+||.+|.-. ++.++|++.|+.+++
T Consensus 163 ~~~I~~DL~~A~~~Lp~~~~~~~~g~~~~r~tk~aA~allarvyL~~a~~~~~~~~~~~~A~~~a~~vi~ 232 (535)
T 3ihv_A 163 YEYIEDDLLYACDILPYATDDQYRESNDYRFSKGAALGLLTKVYATWAGYPVKDESKWEAAAKTARILVE 232 (535)
T ss_dssp HHHHHHHHHHHHHHCCCTTTCCSSSCCTTSCCHHHHHHHHHHHHHHHHSTTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccccccccccccCccHHHHHHHHHHHHHHccCCcccCHHHHHHHHHHHHHHHh
Confidence 66677778888877764321 22 35777777777664 678999999999994
No 288
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=32.72 E-value=42 Score=36.36 Aligned_cols=68 Identities=6% Similarity=-0.102 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhh----CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023865 164 RRATAQLMFELGQKAYG-KGMYGRAIEFLEGALTI----IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (276)
Q Consensus 164 ~~e~ae~~yeaG~aALe-rGdY~qAIelLE~Al~~----~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~ 235 (276)
+....+..|.+=+.+|- .|+...|.++|...... +.++. -...-|+.+|...|+.++|..+++.+...
T Consensus 122 ~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pdv----vTYNtLI~Glck~G~~~eA~~Lf~eM~~~ 194 (1134)
T 3spa_A 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTL----DMYNAVMLGWARQGAFKELVYVLFMVKDA 194 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred HHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCH----hHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 33445566777776664 68999999999764432 23333 37888899999999999999999888743
No 289
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=32.54 E-value=48 Score=27.44 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCC
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT 202 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS 202 (276)
-.-.|-.|..-|.-|+|..|..+++.++...|.+.
T Consensus 78 Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 78 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 34589999999999999999999999999666554
No 290
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=32.06 E-value=54 Score=27.42 Aligned_cols=34 Identities=15% Similarity=0.248 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCC
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT 202 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS 202 (276)
.-.|-.+..-|.-|+|..|..+++.++...|.|.
T Consensus 78 dcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 78 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 3489999999999999999999999999666553
No 291
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=31.94 E-value=1.7e+02 Score=22.94 Aligned_cols=43 Identities=16% Similarity=0.137 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 023865 154 LEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (276)
Q Consensus 154 L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~ 196 (276)
|+..+.+.=.---.|+..+-.++.+.+.|+|..|-++|+.+-+
T Consensus 4 le~~~m~iI~~aG~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~~ 46 (103)
T 1wcr_A 4 LEEVVMGLIINSGQARSLAYAALKQAKQGDFAAAKAMMDQSRM 46 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344443334445688899999999999999999999998755
No 292
>3jq0_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE GOL SO4; 1.13A {Bacteroides vulgatus atcc 8482}
Probab=31.92 E-value=37 Score=31.89 Aligned_cols=51 Identities=6% Similarity=-0.026 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhhhCCCCC-----C---chHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHH
Q 023865 184 YGRAIEFLEGALTIIPRPT-----F---FGGEIQIWLAMAYEANN--------RHADCIALYKQLES 234 (276)
Q Consensus 184 Y~qAIelLE~Al~~~~~nS-----~---lGGEAQmwLAtAYqa~G--------q~EkAIALCQ~L~~ 234 (276)
|.+.|+-|+.|+...|... + --+-|+.+||.+|.-.| +.++|++.|+.+++
T Consensus 153 ~~~I~~DL~~A~~~Lp~~~~~~~gr~~~tk~aA~allArvyL~~~~~~~~~~~~~~~A~~~a~~vi~ 219 (493)
T 3jq0_A 153 MEQIKKDIQASENAFGSDYSFKLGRHFWSAAATQMLKGEAYLWSGRQMNGGNSDYTIAKNAFENVKK 219 (493)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCTTCTTSCCHHHHHHHHHHHHHHHHHHSSCTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCccccccCCcccccHHHHHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHh
Confidence 6666777777777665331 1 12357778888877554 67999999999993
No 293
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=31.83 E-value=85 Score=29.13 Aligned_cols=50 Identities=14% Similarity=-0.063 Sum_probs=39.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 175 G~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
-..|+..|+++.|.+.... ..++ +..-.||.++...|+.+.|+.+|+.+.
T Consensus 659 f~~~l~~~~~~~A~~~~~~------~~~~---~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 659 FELALKVGQLTLARDLLTD------ESAE---MKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHTCHHHHHHHHTT------CCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred eehhhhcCCHHHHHHHHHh------hCcH---hHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 3457889999999887432 1233 577889999999999999999999874
No 294
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=31.74 E-value=64 Score=30.43 Aligned_cols=74 Identities=16% Similarity=0.091 Sum_probs=47.7
Q ss_pred HHhcCCHHH----HHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHhCCCHHHHHHHHH
Q 023865 178 AYGKGMYGR----AIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRH------ADCIALYKQLESNHPSKNIRRQAAD 247 (276)
Q Consensus 178 ALerGdY~q----AIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~------EkAIALCQ~L~~~HPd~qVRqQAKq 247 (276)
+.-=|+|+. +...|+..+..... ....+|.++.+|+.+.+-. ..-..+.+.....++|++||+.|..
T Consensus 449 ~wilGey~~~~~~~~~~l~~l~~~~~~---~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~d~~d~evrdRA~~ 525 (591)
T 2vgl_B 449 IWIVGEYAERIDNADELLESFLEGFHD---ESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYI 525 (591)
T ss_dssp HHHHHTTCTTCTTHHHHHHHHSTTCSS---SCHHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHcccccccCHHHHHHHHHHhhcc---CCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCCChHHHHHHHH
Confidence 344466654 34666666654432 2346888888888766543 2333455554424689999999999
Q ss_pred HHHhhcC
Q 023865 248 LRYILQA 254 (276)
Q Consensus 248 LLyILEA 254 (276)
++.+|..
T Consensus 526 y~~ll~~ 532 (591)
T 2vgl_B 526 YWRLLST 532 (591)
T ss_dssp HHTTTTT
T ss_pred HHHHHCc
Confidence 9999865
No 295
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=31.33 E-value=70 Score=23.98 Aligned_cols=29 Identities=10% Similarity=0.168 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~ 196 (276)
|...+..|..+=..|+|.+|+.++..++.
T Consensus 16 A~~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 16 AATVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556666777778888888887777665
No 296
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=31.01 E-value=78 Score=27.46 Aligned_cols=45 Identities=18% Similarity=0.067 Sum_probs=34.9
Q ss_pred HHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865 189 EFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (276)
Q Consensus 189 elLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (276)
..|+++....-.+.+..+++.+-+|.||...|...+|-.|-++--
T Consensus 108 DqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 108 DKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp HHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 356776665334666677899999999999999999999887766
No 297
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=30.80 E-value=98 Score=25.95 Aligned_cols=65 Identities=14% Similarity=0.068 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCCh----HH----HHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 023865 185 GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRH----AD----CIALYKQLESNHPSKNIRRQAADLRYIL 252 (276)
Q Consensus 185 ~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~----Ek----AIALCQ~L~~~HPd~qVRqQAKqLLyIL 252 (276)
...++.+.+++..- +...=.++..||..+....|-. .. .+..+..+. .|+|+.||.-|..++-.|
T Consensus 138 ~~~~e~l~~~l~~K--npkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l-~d~~~~VR~aA~~l~~~l 210 (278)
T 4ffb_C 138 TQSVELVIPFFEKK--LPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLA-GHGDRNVRSQTMNLIVEI 210 (278)
T ss_dssp HHHHHHHGGGGGCS--CHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHH
Confidence 34445554444322 2233346778999998876642 22 233445555 699999999999986433
No 298
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=30.56 E-value=55 Score=26.20 Aligned_cols=34 Identities=9% Similarity=-0.143 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023865 162 AERRATAQLMFELGQKAYGKGMYGRAIEFLEGAL 195 (276)
Q Consensus 162 a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al 195 (276)
..-+.+|...++.+..+++.|+|..|.=++.+|+
T Consensus 10 ~~wl~~A~~dl~~A~~~~~~g~y~~a~F~aqQA~ 43 (141)
T 3o10_A 10 RRWLRQARANFSAARNDLHKNANEWVCFKCYLST 43 (141)
T ss_dssp HHHHHHHHHHHHHHGGGTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHhhHHhhCccceEeeehhHHH
Confidence 3456778889999999999999987665544444
No 299
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=29.36 E-value=87 Score=22.82 Aligned_cols=29 Identities=10% Similarity=-0.012 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 023865 168 AQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (276)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al~ 196 (276)
|......|..+=..|+|..|+.++..+++
T Consensus 13 A~~l~~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 13 GIELVQKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33445555566667777777777776655
No 300
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=29.13 E-value=3.3e+02 Score=32.74 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023865 150 VRRELEKVAKEQAERRATAQLMFELGQ 176 (276)
Q Consensus 150 v~~~L~~~a~~~a~~~e~ae~~yeaG~ 176 (276)
+++++++.+++-+.+++.|+..+..++
T Consensus 1981 ~~~~~~~~~~ei~~~k~~~e~dL~~A~ 2007 (3245)
T 3vkg_A 1981 LQVQLDVRNKEIAVQKVKAYADLEKAE 2007 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 344555555555555555555554443
No 301
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=28.85 E-value=1e+02 Score=22.72 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=8.9
Q ss_pred HHHcCChHHHHHHHH
Q 023865 216 YEANNRHADCIALYK 230 (276)
Q Consensus 216 Yqa~Gq~EkAIALCQ 230 (276)
++..|+.++|+.+|+
T Consensus 21 ~D~~g~y~eAl~lY~ 35 (83)
T 2v6y_A 21 ADKEGKVEDAITYYK 35 (83)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHH
Confidence 356666666666554
No 302
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=28.69 E-value=3e+02 Score=25.75 Aligned_cols=91 Identities=9% Similarity=0.038 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhhCC-CCCCchHHHHHHHHHHHHHcCChHHHHH-HHHHHHHhCCCHHHH
Q 023865 166 ATAQLMFELGQKAY-GKGMYGRAIEFLEGALTIIP-RPTFFGGEIQIWLAMAYEANNRHADCIA-LYKQLESNHPSKNIR 242 (276)
Q Consensus 166 e~ae~~yeaG~aAL-erGdY~qAIelLE~Al~~~~-~nS~lGGEAQmwLAtAYqa~Gq~EkAIA-LCQ~L~~~HPd~qVR 242 (276)
-++......|+..+ ..|+|.+|-..|-.+..... ..++.-.++-.|++.|=...++..+=.. +.+.....+.+|+++
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHH
Confidence 45777888999999 99999999998877764333 3333334667888888888887443332 222322245677773
Q ss_pred HHHHHHHHhhcCCCC
Q 023865 243 RQAADLRYILQAPKL 257 (276)
Q Consensus 243 qQAKqLLyILEAPkL 257 (276)
|...++..+....+
T Consensus 258 -~l~~L~~a~~~~dl 271 (394)
T 3txn_A 258 -AMKSVAEASHKRSL 271 (394)
T ss_dssp -HHHHHHHHHHTTCH
T ss_pred -HHHHHHHHHHhCCH
Confidence 55666554444433
No 303
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=28.60 E-value=1.2e+02 Score=24.76 Aligned_cols=61 Identities=20% Similarity=0.128 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhc
Q 023865 185 GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQ 253 (276)
Q Consensus 185 ~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILE 253 (276)
..++..|..++. ..+ ..++..-+.|....|.. .++.....+. ++|++.||.+|-..|..+.
T Consensus 127 ~~~~~~L~~~l~---d~~---~~vR~~a~~aL~~~~~~-~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~ 187 (280)
T 1oyz_A 127 PKIVEQSQITAF---DKS---TNVRRATAFAISVINDK-ATIPLLINLL-KDPNGDVRNWAAFAININK 187 (280)
T ss_dssp HHHHHHHHHHTT---CSC---HHHHHHHHHHHHTC----CCHHHHHHHH-TCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh---CCC---HHHHHHHHHHHHhcCCH-HHHHHHHHHH-cCCCHHHHHHHHHHHHhhc
Confidence 356666666554 122 35888888888888874 4666666676 7999999999999888774
No 304
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=28.21 E-value=1.6e+02 Score=21.69 Aligned_cols=24 Identities=46% Similarity=0.511 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhhhhccCcchhh
Q 023865 115 MRELEKKAEELQSKAEEDDSESEA 138 (276)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~ 138 (276)
+.||.++-|+|..++++-+--++-
T Consensus 27 ieelkkkweelkkkieelggggev 50 (67)
T 1lq7_A 27 IEELKKKWEELKKKIEELGGGGEV 50 (67)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSTH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcch
Confidence 467888888888888876654443
No 305
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=27.50 E-value=2.2e+02 Score=22.30 Aligned_cols=53 Identities=15% Similarity=0.008 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcC
Q 023865 164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN 220 (276)
Q Consensus 164 ~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~G 220 (276)
---.|+..+-.++.+.+.|+|..|-++|+.+-+.. ..+-++|.-|.+...+-+
T Consensus 16 ~aG~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~~l----~~AH~~Qt~liq~Ea~g~ 68 (105)
T 2e2a_A 16 YAGDARSKLLEALKAAENGDFAKADSLVVEAGSCI----AEAHSSQTGMLAREASGE 68 (105)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCC
Confidence 33558889999999999999999999999876522 233346666666554333
No 306
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=27.44 E-value=1.1e+02 Score=22.74 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=7.8
Q ss_pred HHHcCChHHHHHHHH
Q 023865 216 YEANNRHADCIALYK 230 (276)
Q Consensus 216 Yqa~Gq~EkAIALCQ 230 (276)
++..|+.++|+.+|+
T Consensus 29 ~D~~g~y~eAl~lY~ 43 (83)
T 2w2u_A 29 ADKEGNAEEAITNYK 43 (83)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHH
Confidence 345555555555554
No 307
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A
Probab=26.98 E-value=70 Score=25.23 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=27.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 023865 212 LAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL 248 (276)
Q Consensus 212 LAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqL 248 (276)
+++|-.+.=..=+||.+|.++...+.|+.+|.-+..+
T Consensus 20 ~~rai~aL~~EleAI~~Y~q~A~~t~D~evk~vl~~i 56 (95)
T 1zpy_A 20 MHRAIISLREELEAVDLYNQRVNACKDKELKAILAHN 56 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3444444445668999999999999999999876654
No 308
>3otn_A SUSD superfamily protein; putative outer membrane protein, carbohydrate binding, structural genomics; HET: MSE; 1.95A {Parabacteroides distasonis}
Probab=26.82 E-value=65 Score=30.04 Aligned_cols=51 Identities=18% Similarity=0.052 Sum_probs=38.0
Q ss_pred HH-HHHHHHHHHhhh-CCCCCC----chHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHH
Q 023865 184 YG-RAIEFLEGALTI-IPRPTF----FGGEIQIWLAMAYEANN---------RHADCIALYKQLES 234 (276)
Q Consensus 184 Y~-qAIelLE~Al~~-~~~nS~----lGGEAQmwLAtAYqa~G---------q~EkAIALCQ~L~~ 234 (276)
|. ..|+-|+.|+.. .|..+. --+-|+.+||.+|.-.| +.++|++.|+.+++
T Consensus 160 y~~~I~~DL~~A~~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~~~~~~~~~~A~~~a~~vi~ 225 (482)
T 3otn_A 160 YDEIIIPDLLEAEQSDLAFSDHTGRVSMGAVKALLADVYLTYAGYPLQGGKSYYAESAKRSLEVIK 225 (482)
T ss_dssp HHHTHHHHHHHHHTSCCCSCCSSSCCCHHHHHHHHHHHHHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCcCCcCcHHHHHHHHHHHHHHhCCCcccCcHHHHHHHHHHHHHHHc
Confidence 66 667778888876 552211 12468888999988777 89999999999994
No 309
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=26.73 E-value=1.6e+02 Score=23.16 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---------CCHH----HHHHHHHHHH
Q 023865 184 YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH---------PSKN----IRRQAADLRY 250 (276)
Q Consensus 184 Y~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H---------Pd~q----VRqQAKqLLy 250 (276)
+..||.++..|+. .+..|+.++||.+|+.=+ .+ +++. +++.++++|.
T Consensus 15 l~kAi~lv~~Ave-------------------~D~ag~y~eAl~lY~~Ai-e~l~~alk~e~~~~~~k~~lr~K~~eYl~ 74 (117)
T 2cpt_A 15 LQKAIDLASKAAQ-------------------EDKAGNYEEALQLYQHAV-QYFLHVVKYEAQGDKAKQSIRAKCTEYLD 74 (117)
T ss_dssp HHHHHHHHHHHHH-------------------HHHHTCHHHHHHHHHHHH-HHHHHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------------------HHHccCHHHHHHHHHHHH-HHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q ss_pred hhc
Q 023865 251 ILQ 253 (276)
Q Consensus 251 ILE 253 (276)
-.|
T Consensus 75 RAE 77 (117)
T 2cpt_A 75 RAE 77 (117)
T ss_dssp HHH
T ss_pred HHH
No 310
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=25.43 E-value=3.8e+02 Score=24.21 Aligned_cols=53 Identities=15% Similarity=0.077 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCH
Q 023865 183 MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR-HADCIALYKQLESNHPSK 239 (276)
Q Consensus 183 dY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq-~EkAIALCQ~L~~~HPd~ 239 (276)
+|..+++++++++...|.|.. +...-..+....|. .+++++.|..++..||.-
T Consensus 125 ~~~~EL~~~~k~l~~dprNy~----AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N 178 (331)
T 3dss_A 125 NWARELELCARFLEADERNFH----CWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN 178 (331)
T ss_dssp CHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC
T ss_pred cHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC
Confidence 599999999999998888776 77777777778888 489999999999888753
No 311
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=25.10 E-value=92 Score=24.31 Aligned_cols=59 Identities=10% Similarity=0.016 Sum_probs=36.4
Q ss_pred HhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhc
Q 023865 179 YGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQ 253 (276)
Q Consensus 179 LerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILE 253 (276)
+..+++..++.+|... ...+.+..+ +.. +.=..+ -..|.++||+++|+.-|+.|+..|.
T Consensus 25 ~~~~~~~~~l~~L~~L-~~~~iT~e~------L~~--------T~IGk~-Vn~LrKh~~~~~V~~lAk~Lv~~WK 83 (103)
T 1wjt_A 25 VSRKKTEGALDLLKKL-NSCQMSIQL------LQT--------TRIGVA-VNGVRKHCSDKEVVSLAKVLIKNWK 83 (103)
T ss_dssp HHTTCCSSHHHHHHHH-HTSCCCHHH------HHH--------TCHHHH-HHHHHHHCCCSHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHH-hCCCCCHHH------HHH--------cchhHH-HHHHHccCCcHHHHHHHHHHHHHHH
Confidence 3456778899999885 545554332 111 111122 2346634599999999999987664
No 312
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=24.95 E-value=78 Score=23.86 Aligned_cols=30 Identities=10% Similarity=0.163 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~ 196 (276)
.|...+..|...=..|+|.+|+.++..+++
T Consensus 14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444556666666677777777776666554
No 313
>3nqp_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Bacteroides fragilis nctc 9343}
Probab=24.74 E-value=88 Score=29.35 Aligned_cols=51 Identities=4% Similarity=-0.087 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhhCCCCCC------------chHHHHHHHHHHHHHcC------------ChHHHHHHHHHHHH
Q 023865 184 YGRAIEFLEGALTIIPRPTF------------FGGEIQIWLAMAYEANN------------RHADCIALYKQLES 234 (276)
Q Consensus 184 Y~qAIelLE~Al~~~~~nS~------------lGGEAQmwLAtAYqa~G------------q~EkAIALCQ~L~~ 234 (276)
|.+.|+-|+.|+...|.... --+-|+.+||.+|.-.| +.++|++.|+.+++
T Consensus 167 ~~~I~~DL~~A~~~Lp~~~~~~~~~~~gr~~~tk~aA~allArvyL~~~~~~~g~~~~~~~~~~~A~~~a~~vi~ 241 (514)
T 3nqp_A 167 MTQIKSDLNKSMEYFGNMNDFDPYKRGKKVYWSKAATECLMGEVYLWTSKVTTGDDVANPADLTIAKTHLESVLN 241 (514)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSCTTSSCTTSSCCHHHHHHHHHHHHHHHHHCCBTTBCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccccccccCcccccHHHHHHHHHHHHHHhCCcccCCCccchHHHHHHHHHHHHHHh
Confidence 66667778888776653211 12357788888886432 46999999999994
No 314
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=24.34 E-value=95 Score=33.00 Aligned_cols=77 Identities=14% Similarity=0.119 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 023865 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYI 251 (276)
Q Consensus 172 yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyI 251 (276)
.-.|+..+--|+...+=.+++.......+..+. -+-+.++.||.+.|+...--.|-..+. .+++..||+.|---|..
T Consensus 528 aalgLGll~~g~~e~~~~li~~L~~~~dp~vRy--gaa~alglAyaGTGn~~aIq~LL~~~~-~d~~d~VRraAViaLGl 604 (963)
T 4ady_A 528 LAVGLALINYGRQELADDLITKMLASDESLLRY--GGAFTIALAYAGTGNNSAVKRLLHVAV-SDSNDDVRRAAVIALGF 604 (963)
T ss_dssp HHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHH--HHHHHHHHHTTTSCCHHHHHHHHHHHH-HCSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHH--HHHHHHHHHhcCCCCHHHHHHHHHHhc-cCCcHHHHHHHHHHHHh
Confidence 444555555666665555556544433333332 355778899999999654444888888 89999999888776664
No 315
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.14 E-value=3.4e+02 Score=24.75 Aligned_cols=76 Identities=11% Similarity=0.047 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCC--CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023865 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT--FFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ 244 (276)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS--~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ 244 (276)
...+..-.-++..|+|..+..++.++-....... ..=+..+.+.+.++...++..+|-..|-.+..++...+.-..
T Consensus 169 d~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~ 246 (429)
T 4b4t_R 169 DVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSY 246 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCccchhhH
Confidence 4456667778899999999999999876655333 333456777788889999999999988887756665554433
No 316
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=23.11 E-value=1.5e+02 Score=22.33 Aligned_cols=12 Identities=25% Similarity=0.290 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHh
Q 023865 184 YGRAIEFLEGAL 195 (276)
Q Consensus 184 Y~qAIelLE~Al 195 (276)
...||.++..|+
T Consensus 12 l~~Ai~lv~~Av 23 (93)
T 1wfd_A 12 STAAVAVLKRAV 23 (93)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 317
>2i9c_A Hypothetical protein RPA1889; structural genomics, SAD, PSI-2, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.00A {Rhodopseudomonas palustris} SCOP: a.118.1.25
Probab=23.07 E-value=2.3e+02 Score=23.04 Aligned_cols=53 Identities=19% Similarity=0.137 Sum_probs=30.6
Q ss_pred HHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 023865 177 KAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYE-ANNRHADCIALYKQLESNHPSKNIRRQAADL 248 (276)
Q Consensus 177 aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYq-a~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqL 248 (276)
.|+..|++.++=.++.++... . .... ..|+.-+| .-.|. .|||++||-||.-+
T Consensus 27 eA~~~~d~~~~Nr~~~kl~~~-----------~----~eLk~r~Gd~R~a---Ll~Ll-~H~n~~VRl~AA~~ 80 (123)
T 2i9c_A 27 DALLGNQISRFNRLFGVMAEI-----------A----DELKARDGDQRTA---LLSLF-EYPNMQVRLQAAKL 80 (123)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-----------H----HHHHHSTTCGGGG---GGGGG-GSSCHHHHHHHHHT
T ss_pred HHHHcccHHHHHHHHHHHHHH-----------H----HHHHhcCCcHHHH---HHHHH-hCCCccHHHHHHHH
Confidence 467788888887777765441 1 1122 22443333 23444 58888888777754
No 318
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=23.03 E-value=30 Score=26.99 Aligned_cols=21 Identities=14% Similarity=0.294 Sum_probs=10.2
Q ss_pred HHHHHHHHHhc---CCHHHHHHHH
Q 023865 171 MFELGQKAYGK---GMYGRAIEFL 191 (276)
Q Consensus 171 ~yeaG~aALer---GdY~qAIelL 191 (276)
.+..|+.+=+. |+=.+|++++
T Consensus 19 ~Is~aL~~DE~~~~G~k~~A~~~Y 42 (89)
T 3eab_A 19 YISIALRIDEDEKAGQKEQAVEWY 42 (89)
T ss_dssp HHHHHHHHHHHSCSSSGGGSHHHH
T ss_pred HHHHHHHhhhcccCCCHHHHHHHH
Confidence 34445555455 5555554443
No 319
>3l22_A SUSD superfamily protein; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.05A {Bacteroides fragilis}
Probab=22.83 E-value=44 Score=30.82 Aligned_cols=52 Identities=13% Similarity=0.102 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhhhCCCCCC--------chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865 184 YGRAIEFLEGALTIIPRPTF--------FGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (276)
Q Consensus 184 Y~qAIelLE~Al~~~~~nS~--------lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (276)
|.+.|+-|+.| ...|.... --+-|..+||++|.-.|+.++|++.|+.++ .++
T Consensus 172 y~~I~~DL~~A-~~Lp~~~~~~~~~gr~tk~aA~allarvyL~~~~~~~A~~~a~~vi-~y~ 231 (441)
T 3l22_A 172 YEHILSDLENI-SALDTEVNTYTGVTHATQAAANMLKMRVYMAMNEWDKAITAGELVT-GYS 231 (441)
T ss_dssp HHHHHHHTSCC-TTSBCCSSSHHHHHSCBHHHHHHHHHHHHHHTTCHHHHHHHHHTCC-SCC
T ss_pred HHHHHHHHHHH-hccccccccCccCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHh-cCc
Confidence 44445555555 55543321 123578899999999999999999999998 553
No 320
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=22.62 E-value=1e+02 Score=22.92 Aligned_cols=31 Identities=13% Similarity=0.064 Sum_probs=24.8
Q ss_pred HHHHHHHHHHcCChHHHHH-HHHHHHHhCCCHH
Q 023865 209 QIWLAMAYEANNRHADCIA-LYKQLESNHPSKN 240 (276)
Q Consensus 209 QmwLAtAYqa~Gq~EkAIA-LCQ~L~~~HPd~q 240 (276)
++.+.-.+.+.|+.++|+. +|+.|. -||.|.
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~-Vc~qP~ 51 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIA-VCGQPQ 51 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-TCSSCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH-HcCCHH
Confidence 4556667888899988888 899998 898874
No 321
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=22.25 E-value=86 Score=25.03 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=20.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhh
Q 023865 173 ELGQKAYGKGMYGRAIEFLEGALT 196 (276)
Q Consensus 173 eaG~aALerGdY~qAIelLE~Al~ 196 (276)
..+.+.+..|.|+.||+..++++.
T Consensus 20 RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCHHHHHHHHHHHHH
Confidence 356788999999999998888775
No 322
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=21.85 E-value=88 Score=24.51 Aligned_cols=38 Identities=18% Similarity=0.147 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCChHHHHH-HHHHHHHhCCCHHHHHHHHHHHHhhc
Q 023865 209 QIWLAMAYEANNRHADCIA-LYKQLESNHPSKNIRRQAADLRYILQ 253 (276)
Q Consensus 209 QmwLAtAYqa~Gq~EkAIA-LCQ~L~~~HPd~qVRqQAKqLLyILE 253 (276)
++.|.-.+.+.|+.+.|+. +|+.|. -||.|. +||.||+
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~-Vc~qP~------~LL~i~q 61 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIA-VCGQPQ------QLLQVLQ 61 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH-HHSCHH------HHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH-HcCCHH------HHHHHHH
Confidence 4566677788999999999 999998 788774 4555553
No 323
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=20.69 E-value=1.4e+02 Score=23.40 Aligned_cols=48 Identities=21% Similarity=0.341 Sum_probs=34.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHH
Q 023865 100 DWEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKV 157 (276)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~~ 157 (276)
|+|..+...+.|++.+|.-.-..|.-+.++-..= |+--.|+|.+|+.+
T Consensus 40 eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~Y----------EeEI~rLr~eLe~r 87 (92)
T 3vp9_A 40 DYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAY----------EEEIKHLKLGLEQR 87 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHTC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 6788888899999999887777777776665443 44456788888754
No 324
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=20.69 E-value=1.5e+02 Score=23.68 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC-----CCCCchHHHHHHHHHHHHH
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP-----RPTFFGGEIQIWLAMAYEA 218 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~-----~nS~lGGEAQmwLAtAYqa 218 (276)
+-+-..+..++.|+++|+|...-..+-+|..+.. .+...||++---|..-|.-
T Consensus 34 dgal~~l~~A~~ai~~~d~~~k~~~i~KA~~Ii~~L~~sLd~e~GgeiA~nL~~LY~y 91 (131)
T 3iqc_A 34 EGILRFSSQAKRCIENEDIEKKIYYINRVTDIFTELLNILDYEKGGEVAVYLTGLYTH 91 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHH
Confidence 4456678889999999999988887777776443 4555688877777776654
No 325
>2jpu_A ORF C02003 protein; solution structure, SSR10, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} PDB: 2q00_A
Probab=20.48 E-value=1.5e+02 Score=24.31 Aligned_cols=31 Identities=23% Similarity=0.207 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 023865 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (276)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~ 196 (276)
+.|...++.|..-|.+||..||=+.+=+|++
T Consensus 5 ~lAe~yL~EA~ell~kGD~vQAsEK~ykAae 35 (129)
T 2jpu_A 5 TSAEVYYEEAEEFLSKGDLVQACEKYYKAAE 35 (129)
T ss_dssp CHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4577889999999999999999988887776
No 326
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=20.48 E-value=2.8e+02 Score=20.82 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023865 145 EKRMRVRRELEKVAKEQAERRATAQLMFELGQKA 178 (276)
Q Consensus 145 ~~~~rv~~~L~~~a~~~a~~~e~ae~~yeaG~aA 178 (276)
+...+|++.+.+.-.-+-++...|.+.|+.-..-
T Consensus 62 ~~l~~I~~~~~~~~~l~dEKv~lA~~~~dlvdkh 95 (104)
T 4afl_A 62 ALLKQIQEAYGKCKEFGDDKVQLAMQTYEMVDKH 95 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346677766665555555666677776654433
No 327
>2wxu_A Phospholipase C; cytolysis, hydrolase, hemolysis, membrane binding, virulence gangrene determinant, C2 domain; 1.80A {Clostridium perfringens} PDB: 2wy6_A 2wxt_A 1qm6_A 1qmd_A 1ca1_A 1gyg_A 1kho_A
Probab=20.05 E-value=1.1e+02 Score=29.03 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Q 023865 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTII 198 (276)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~ 198 (276)
+++..|+.+..++++|+|..|.-+|=.+|..+
T Consensus 97 ~~~ky~~~A~~~~~~g~~~~A~~~LG~a~Hy~ 128 (370)
T 2wxu_A 97 QIRKFSALARYEWQRGNYKQATFYLGEAMHYF 128 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 34567999999999999999999999998654
Done!