BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023866
(276 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IZZ|A Chain A, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|B Chain B, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|C Chain C, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|D Chain D, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|E Chain E, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
Length = 322
Score = 194 bits (494), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 116/273 (42%), Positives = 156/273 (57%), Gaps = 9/273 (3%)
Query: 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNA 67
+S +GFIGAG++A ++AKG +GVL +I ++ +L A +GVK+ N
Sbjct: 21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKE 80
Query: 68 XXXXXXXXXXXXKPQV-----DKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHS 122
KP + D+ E+ C + + S ++ S +
Sbjct: 81 TVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPA---P 137
Query: 123 RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG 182
R IR M NTP V E ATV + G A EDG L+ +L SVG +E L DA+TGLSG
Sbjct: 138 RVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSG 197
Query: 183 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG 242
SGPAY F A++ALADGGV GLPR LA+ L +Q +LGAA M+ S +HPGQLKD+V+SPG
Sbjct: 198 SGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPG 257
Query: 243 GTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 275
G TI +H LE GFR +L+NAV A+ R+REL
Sbjct: 258 GATIHALHVLESGGFRSLLINAVEASCIRTREL 290
>pdb|2GER|A Chain A, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|B Chain B, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|C Chain C, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|D Chain D, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|E Chain E, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
Length = 321
Score = 193 bits (490), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 115/269 (42%), Positives = 154/269 (57%), Gaps = 9/269 (3%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXX 71
+GFIGAG++A ++AKG +GVL +I ++ +L A +GVK+ N
Sbjct: 5 VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQH 64
Query: 72 XXXXXXXXKPQV-----DKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIR 126
KP + D+ E+ C + + S ++ S + R IR
Sbjct: 65 SDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPA---PRVIR 121
Query: 127 VMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPA 186
M NTP V E ATV + G A EDG L+ +L SVG +E L DA+TGLSGSGPA
Sbjct: 122 CMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPA 181
Query: 187 YIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI 246
Y F A++ALADGGV GLPR LA+ L +Q +LGAA M+ S +HPGQLKD+V+SPGG TI
Sbjct: 182 YAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATI 241
Query: 247 AGIHELEKSGFRGILMNAVVAAAKRSREL 275
+H LE GFR +L+NAV A+ R+REL
Sbjct: 242 HALHVLESGGFRSLLINAVEASCIRTREL 270
>pdb|2GR9|A Chain A, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|B Chain B, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|C Chain C, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|D Chain D, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|E Chain E, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GRA|A Chain A, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|B Chain B, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|C Chain C, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|D Chain D, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|E Chain E, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
Length = 277
Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 115/270 (42%), Positives = 154/270 (57%), Gaps = 9/270 (3%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXX 71
+GFIGAG++A ++AKG +GVL +I ++ +L A +GVK+ N
Sbjct: 5 VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQH 64
Query: 72 XXXXXXXXKPQV-----DKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIR 126
KP + D+ E+ C + + S ++ S + R IR
Sbjct: 65 SDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPA---PRVIR 121
Query: 127 VMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPA 186
M NTP V E ATV + G A EDG L+ +L SVG +E L DA+TGLSGSGPA
Sbjct: 122 CMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPA 181
Query: 187 YIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI 246
Y F A++ALADGGV GLPR LA+ L +Q +LGAA M+ S +HPGQLKD+V+SPGG TI
Sbjct: 182 YAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATI 241
Query: 247 AGIHELEKSGFRGILMNAVVAAAKRSRELS 276
+H LE GFR +L+NAV A+ R+REL
Sbjct: 242 HALHVLESGGFRSLLINAVEASCIRTRELQ 271
>pdb|2RCY|A Chain A, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
pdb|2RCY|B Chain B, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
pdb|2RCY|C Chain C, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
pdb|2RCY|D Chain D, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
pdb|2RCY|E Chain E, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
Length = 262
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 88/152 (57%)
Query: 122 SRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLS 181
++ + V PNTP VGE + + D + + +F S G I EK D T +S
Sbjct: 107 NKIVWVXPNTPCLVGEGSFIYCSNKNVNSTDKKYVNDIFNSCGIIHEIKEKDXDIATAIS 166
Query: 182 GSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASP 241
G GPAY++L IE+L D GV GL REL+ L QT+ G+ V KS + QLKD++ SP
Sbjct: 167 GCGPAYVYLFIESLIDAGVKNGLSRELSKNLVLQTIKGSVEXVKKSDQPVQQLKDNIVSP 226
Query: 242 GGTTIAGIHELEKSGFRGILMNAVVAAAKRSR 273
GG T G++ LEK+ F+ + NAV AA ++S+
Sbjct: 227 GGITAVGLYSLEKNSFKYTVXNAVEAACEKSK 258
>pdb|3TRI|A Chain A, Structure Of A Pyrroline-5-Carboxylate Reductase (Proc)
From Coxiella Burnetii
pdb|3TRI|B Chain B, Structure Of A Pyrroline-5-Carboxylate Reductase (Proc)
From Coxiella Burnetii
Length = 280
Score = 122 bits (305), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 94/268 (35%), Positives = 125/268 (46%), Gaps = 8/268 (2%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-ESIGVKVLSDNNAXXXX 71
+ FIG G A +I G+ +G P+RIC S L + D F E GV DN
Sbjct: 6 ITFIGGGNXARNIVVGLIANG-YDPNRICVTNRS-LDKLDFFKEKCGVHTTQDNRQGALN 63
Query: 72 XXXXXXXXKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVE-WTGH-SRFIRVMP 129
KP K + EE + + + +E W G SR +R P
Sbjct: 64 ADVVVLAVKPHQIKX--VCEELKDILSETKILVISLAVGVTTPLIEKWLGKASRIVRAXP 121
Query: 130 NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVG-KIWRADEKLFDAITGLSGSGPAYI 188
NTPS+V AT + T ++ L + +VG IW + E + I LSGSGPAYI
Sbjct: 122 NTPSSVRAGATGLFANETVDKDQKNLAESIXRAVGLVIWVSSEDQIEKIAALSGSGPAYI 181
Query: 189 FLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG 248
FL EAL + GL +E A L QTVLGAA ++ + QL+ V SPGGTT
Sbjct: 182 FLIXEALQEAAEQLGLTKETAELLTEQTVLGAARXALETEQSVVQLRQFVTSPGGTTEQA 241
Query: 249 IHELEKSGFRGILMNAVVAAAKRSRELS 276
I LE R + + A+ AA R++ELS
Sbjct: 242 IKVLESGNLRELFIKALTAAVNRAKELS 269
>pdb|2AMF|A Chain A, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AMF|B Chain B, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AMF|C Chain C, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AMF|D Chain D, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AMF|E Chain E, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
Length = 259
Score = 117 bits (293), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 134/265 (50%), Gaps = 13/265 (4%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKVLSDNNAXXXX 71
+G IG GKMA +I KG+ ++ P + I + S+L+R ++ E + + +
Sbjct: 6 IGIIGVGKMASAIIKGLKQT---PHELIISG--SSLERSKEIAEQLALPYAMSHQDLIDQ 60
Query: 72 XXXXXXXXKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSR-FIRVMPN 130
KPQ+ + + + F + LQR + +V G +R+MPN
Sbjct: 61 VDLVILGIKPQLFETVL---KPLHFKQPIISMAAGISLQRLATFV---GQDLPLLRIMPN 114
Query: 131 TPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFL 190
+ + +++T ++ ++E + L S G + EK FD T L+GS PAYI+L
Sbjct: 115 MNAQILQSSTALTGNALVSQELQARVRDLTDSFGSTFDISEKDFDTFTALAGSSPAYIYL 174
Query: 191 AIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIH 250
IEALA GV G+P+ AL + +QTVL +AS + S + P D + SPGGTTIAG+
Sbjct: 175 FIEALAKAGVKNGIPKAKALEIVTQTVLASASNLKTSSQSPHDFIDAICSPGGTTIAGLM 234
Query: 251 ELEKSGFRGILMNAVVAAAKRSREL 275
ELE+ G + +A+ +++ L
Sbjct: 235 ELERLGLTATVSSAIDKTIDKAKSL 259
>pdb|3GT0|A Chain A, Crystal Structure Of Pyrroline 5-Carboxylate Reductase
From Bacillus Cereus. Northeast Structural Genomics
Consortium Target Bcr38b
Length = 247
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 120/244 (49%), Gaps = 1/244 (0%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAXXXXX 72
+GFIG G + G ++ ++I + + ++A E G+ +DNN
Sbjct: 5 IGFIGCGNXGXAXIGGXINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNA 64
Query: 73 XXXXXXXKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNTP 132
KP + A++I E + +G S + + +RV PNTP
Sbjct: 65 DILILSIKPDL-YASIINEIKEIIKNDAIIVTIAAGKSIESTENAFNKKVKVVRVXPNTP 123
Query: 133 SAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAI 192
+ VGE + + TE+D E + +F S G+ EKL D +T +SGS PAY++ I
Sbjct: 124 ALVGEGXSALCPNEXVTEKDLEDVLNIFNSFGQTEIVSEKLXDVVTSVSGSSPAYVYXII 183
Query: 193 EALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHEL 252
EA AD V G PR A A+Q VLG+A V ++G HPG+LKD V SPGGTTI + L
Sbjct: 184 EAXADAAVLDGXPRNQAYKFAAQAVLGSAKXVLETGIHPGELKDXVCSPGGTTIEAVATL 243
Query: 253 EKSG 256
E+ G
Sbjct: 244 EEKG 247
>pdb|2AHR|A Chain A, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AHR|B Chain B, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AHR|C Chain C, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AHR|D Chain D, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AHR|E Chain E, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
Length = 259
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 127/265 (47%), Gaps = 13/265 (4%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKVLSDNNAXXXX 71
+G IG GK A +I KG+ ++ P + I + S+L+R ++ E + + +
Sbjct: 6 IGIIGVGKXASAIIKGLKQT---PHELIISG--SSLERSKEIAEQLALPYAXSHQDLIDQ 60
Query: 72 XXXXXXXXKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSR-FIRVMPN 130
KPQ + E + I + R + G +R+ PN
Sbjct: 61 VDLVILGIKPQ------LFETVLKPLHFKQPIISXAAGISLQRLATFVGQDLPLLRIXPN 114
Query: 131 TPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFL 190
+ + +++T ++ ++E + L S G + EK FD T L+GS PAYI+L
Sbjct: 115 XNAQILQSSTALTGNALVSQELQARVRDLTDSFGSTFDISEKDFDTFTALAGSSPAYIYL 174
Query: 191 AIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIH 250
IEALA GV G+P+ AL + +QTVL +AS + S + P D + SPGGTTIAG+
Sbjct: 175 FIEALAKAGVKNGIPKAKALEIVTQTVLASASNLKTSSQSPHDFIDAICSPGGTTIAGLX 234
Query: 251 ELEKSGFRGILMNAVVAAAKRSREL 275
ELE+ G + +A+ +++ L
Sbjct: 235 ELERLGLTATVSSAIDKTIDKAKSL 259
>pdb|1YQG|A Chain A, Crystal Structure Of A Pyrroline-5-Carboxylate Reductase
From Neisseria Meningitides Mc58
pdb|2AG8|A Chain A, Nadp Complex Of Pyrroline-5-Carboxylate Reductase From
Neisseria Meningitidis
Length = 263
Score = 84.0 bits (206), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 1/156 (0%)
Query: 120 GHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVG-KIWRADEKLFDAIT 178
G R +RV PNTP +G + +E D + ++ SVG +W DE+ IT
Sbjct: 102 GTRRIVRVXPNTPGKIGLGVSGXYAEAEVSETDRRIADRIXKSVGLTVWLDDEEKXHGIT 161
Query: 179 GLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDV 238
G+SGSGPAY+F ++AL + + G A L+ T GA ++ ++G+ +L+ +V
Sbjct: 162 GISGSGPAYVFYLLDALQNAAIRQGFDXAEARALSLATFKGAVALAEQTGEDFEKLQKNV 221
Query: 239 ASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRE 274
S GGTT + + + V A +RS+E
Sbjct: 222 TSKGGTTHEAVEAFRRHRVAEAISEGVCACVRRSQE 257
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris
pdb|2QXZ|B Chain B, Pectate Lyase R236f From Xanthomonas Campestris
Length = 330
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 125 IRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSG 184
IRV+ N + + + T+ L G + L G G KIW +F ++T SG+G
Sbjct: 88 IRVVGNAHNVIIQNMTIGLLQGGEDADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAG 147
Query: 185 PA 186
A
Sbjct: 148 DA 149
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris
Pv. Campestris Str. Atcc 33913
pdb|2QX3|B Chain B, Structure Of Pectate Lyase Ii From Xanthomonas Campestris
Pv. Campestris Str. Atcc 33913
Length = 330
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 125 IRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSG 184
IRV+ N + + + T+ L G + L G G KIW +F ++T SG+G
Sbjct: 88 IRVVGNAHNVIIQNMTIGLLQGGEDADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAG 147
Query: 185 PA 186
A
Sbjct: 148 DA 149
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris
pdb|2QY1|B Chain B, Pectate Lyase A31g/r236f From Xanthomonas Campestris
Length = 330
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 125 IRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSG 184
IRV+ N + + + T+ L G + L G G KIW +F ++T SG+G
Sbjct: 88 IRVVGNAHNVIIQNMTIGLLQGGEDADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAG 147
Query: 185 PA 186
A
Sbjct: 148 DA 149
>pdb|3MWB|A Chain A, The Crystal Structure Of Prephenate Dehydratase In Complex
With L-Phe From Arthrobacter Aurescens To 2.0a
pdb|3MWB|B Chain B, The Crystal Structure Of Prephenate Dehydratase In Complex
With L-Phe From Arthrobacter Aurescens To 2.0a
Length = 313
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 15/121 (12%)
Query: 103 IERPSGLQRWSRWVEWTGHSRFIRVMP---NTPSAVGE-----AATVMSLGGTATEEDGE 154
+ RP L E TG + V+P + P A+ E A+ ++L + G+
Sbjct: 187 VSRPGALP------ERTGADKTTVVVPLPEDHPGALXEILDQFASRGVNLSRIESRPTGQ 240
Query: 155 LIGKLFGSVGKIWRA-DEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLA 213
+G F S+ A D ++ DA+ GL PA FL A AD A P A
Sbjct: 241 YLGHYFFSIDADGHATDSRVADALAGLHRISPATRFLGSYARADKQPAVVAPHTSDAAFA 300
Query: 214 S 214
S
Sbjct: 301 S 301
>pdb|1H0H|A Chain A, Tungsten Containing Formate Dehydrogenase From
Desulfovibrio Gigas
pdb|1H0H|K Chain K, Tungsten Containing Formate Dehydrogenase From
Desulfovibrio Gigas
Length = 977
Score = 27.3 bits (59), Expect = 8.7, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 11/99 (11%)
Query: 81 PQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNTPSAVGEAAT 140
P +D + TE F C IE+ + RW++W R++ P +A+ +
Sbjct: 556 PDMDPKKIKTE--VFFLPCAVAIEKEGSISNSGRWMQW----RYVGPEPRK-NAIPDGDL 608
Query: 141 VMSLGGTATEEDGELIGKLFGSVGKI----WRADEKLFD 175
++ L + + GKL V K+ W D FD
Sbjct: 609 IVELAKRVQKLLAKTPGKLAAPVTKLKTDYWVNDHGHFD 647
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,979,504
Number of Sequences: 62578
Number of extensions: 318970
Number of successful extensions: 859
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 837
Number of HSP's gapped (non-prelim): 18
length of query: 276
length of database: 14,973,337
effective HSP length: 97
effective length of query: 179
effective length of database: 8,903,271
effective search space: 1593685509
effective search space used: 1593685509
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)