Query 023866
Match_columns 276
No_of_seqs 239 out of 2101
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 07:13:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023866.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023866hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0345 ProC Pyrroline-5-carbo 100.0 4.1E-57 8.8E-62 378.3 30.0 263 10-276 1-264 (266)
2 PRK12491 pyrroline-5-carboxyla 100.0 1.3E-55 2.8E-60 376.8 30.3 263 11-276 3-267 (272)
3 PTZ00431 pyrroline carboxylate 100.0 7.8E-51 1.7E-55 346.4 28.9 259 8-276 1-260 (260)
4 PRK06928 pyrroline-5-carboxyla 100.0 3.9E-50 8.4E-55 345.0 28.6 263 10-276 1-267 (277)
5 PLN02688 pyrroline-5-carboxyla 100.0 7.4E-48 1.6E-52 330.0 31.1 264 11-276 1-264 (266)
6 PRK07679 pyrroline-5-carboxyla 100.0 1.1E-47 2.4E-52 330.7 29.8 266 8-276 1-269 (279)
7 PRK11880 pyrroline-5-carboxyla 100.0 2.2E-45 4.7E-50 314.9 29.9 261 10-276 2-265 (267)
8 KOG3124 Pyrroline-5-carboxylat 100.0 2.9E-46 6.2E-51 303.5 22.7 263 11-276 1-265 (267)
9 TIGR00112 proC pyrroline-5-car 100.0 5.1E-45 1.1E-49 307.7 26.1 241 31-274 3-245 (245)
10 PRK07680 late competence prote 100.0 6.8E-44 1.5E-48 306.3 29.5 259 11-274 1-262 (273)
11 PRK06476 pyrroline-5-carboxyla 100.0 1.9E-42 4.1E-47 295.1 27.7 250 11-274 1-255 (258)
12 PRK07634 pyrroline-5-carboxyla 100.0 1.6E-41 3.5E-46 287.5 26.4 242 7-253 1-245 (245)
13 TIGR00465 ilvC ketol-acid redu 100.0 2.9E-32 6.2E-37 236.3 22.3 219 9-241 2-240 (314)
14 PRK14806 bifunctional cyclohex 100.0 1E-27 2.2E-32 232.0 18.9 249 11-274 4-279 (735)
15 PRK06545 prephenate dehydrogen 100.0 2.9E-27 6.2E-32 210.3 18.1 248 11-274 1-274 (359)
16 PRK07417 arogenate dehydrogena 99.9 3.2E-26 7E-31 197.2 19.2 250 11-274 1-272 (279)
17 PRK08507 prephenate dehydrogen 99.9 1.6E-25 3.4E-30 192.6 21.0 248 11-274 1-270 (275)
18 PF14748 P5CR_dimer: Pyrroline 99.9 2.7E-25 5.9E-30 163.1 13.5 107 169-275 1-107 (107)
19 COG2084 MmsB 3-hydroxyisobutyr 99.9 3.1E-24 6.7E-29 181.7 21.6 248 11-275 1-271 (286)
20 PRK08655 prephenate dehydrogen 99.9 3.3E-24 7.1E-29 194.7 22.9 243 11-274 1-269 (437)
21 PRK07502 cyclohexadienyl dehyd 99.9 7.3E-24 1.6E-28 185.1 20.7 254 10-274 6-283 (307)
22 PLN02256 arogenate dehydrogena 99.9 3.5E-23 7.7E-28 179.3 20.3 246 8-271 34-296 (304)
23 KOG0409 Predicted dehydrogenas 99.9 8.2E-23 1.8E-27 170.3 20.4 248 9-274 34-305 (327)
24 COG0287 TyrA Prephenate dehydr 99.9 2E-22 4.3E-27 171.7 21.9 248 9-274 2-274 (279)
25 PRK15461 NADH-dependent gamma- 99.9 4.3E-21 9.3E-26 166.6 21.9 249 11-274 2-271 (296)
26 PRK05479 ketol-acid reductoiso 99.9 1.1E-20 2.4E-25 163.8 22.6 209 7-225 14-240 (330)
27 PRK11199 tyrA bifunctional cho 99.9 6.1E-21 1.3E-25 170.4 21.3 235 9-274 97-348 (374)
28 PRK15059 tartronate semialdehy 99.9 1.5E-20 3.3E-25 162.5 22.8 247 11-275 1-269 (292)
29 TIGR01692 HIBADH 3-hydroxyisob 99.8 1.9E-19 4E-24 155.9 20.6 246 15-275 1-273 (288)
30 PLN02712 arogenate dehydrogena 99.8 2.2E-19 4.7E-24 170.3 21.4 244 9-270 368-628 (667)
31 TIGR01505 tartro_sem_red 2-hyd 99.8 1.2E-18 2.6E-23 151.1 22.9 246 12-275 1-269 (291)
32 PRK08818 prephenate dehydrogen 99.8 4.4E-19 9.5E-24 156.7 19.7 232 9-274 3-267 (370)
33 PRK12490 6-phosphogluconate de 99.8 2E-18 4.2E-23 150.2 23.1 199 11-221 1-218 (299)
34 PLN02350 phosphogluconate dehy 99.8 1.8E-18 4E-23 157.9 22.2 194 7-214 3-225 (493)
35 PF03446 NAD_binding_2: NAD bi 99.8 6.4E-20 1.4E-24 145.6 10.6 151 10-171 1-163 (163)
36 PLN02858 fructose-bisphosphate 99.8 2.2E-18 4.8E-23 174.2 23.9 247 10-274 4-276 (1378)
37 PLN02712 arogenate dehydrogena 99.8 2.4E-18 5.3E-23 163.2 21.8 242 10-270 52-311 (667)
38 PRK06130 3-hydroxybutyryl-CoA 99.8 3.4E-18 7.3E-23 149.7 21.1 190 9-216 3-219 (311)
39 PRK11559 garR tartronate semia 99.8 8.7E-18 1.9E-22 146.1 23.3 247 10-275 2-272 (296)
40 PRK07531 bifunctional 3-hydrox 99.8 1.9E-17 4.1E-22 153.2 25.0 188 10-216 4-220 (495)
41 PRK05808 3-hydroxybutyryl-CoA 99.8 2.8E-17 6E-22 142.0 22.6 155 8-171 1-183 (282)
42 PRK09599 6-phosphogluconate de 99.8 1.4E-17 3E-22 145.0 20.2 194 11-216 1-213 (301)
43 PF02153 PDH: Prephenate dehyd 99.8 2.3E-18 4.9E-23 146.6 14.2 220 25-262 1-245 (258)
44 TIGR00872 gnd_rel 6-phosphoglu 99.8 1.2E-16 2.5E-21 139.0 24.4 196 11-217 1-212 (298)
45 PLN02858 fructose-bisphosphate 99.8 4.2E-17 9.1E-22 165.0 23.9 248 10-274 324-596 (1378)
46 PRK14618 NAD(P)H-dependent gly 99.8 6.5E-19 1.4E-23 155.3 9.0 193 9-214 3-239 (328)
47 PTZ00142 6-phosphogluconate de 99.8 3.7E-16 8E-21 142.7 24.1 192 10-214 1-219 (470)
48 PRK06129 3-hydroxyacyl-CoA deh 99.8 3.7E-16 8.1E-21 136.5 22.2 216 11-250 3-250 (308)
49 PRK12557 H(2)-dependent methyl 99.7 3.6E-16 7.8E-21 137.5 21.0 206 11-228 1-252 (342)
50 PLN02545 3-hydroxybutyryl-CoA 99.7 3.8E-16 8.1E-21 135.8 20.9 155 8-171 2-184 (295)
51 PRK00094 gpsA NAD(P)H-dependen 99.7 4.4E-16 9.6E-21 137.1 20.4 195 10-213 1-239 (325)
52 TIGR01915 npdG NADPH-dependent 99.7 9.4E-17 2E-21 133.6 14.1 151 11-171 1-189 (219)
53 TIGR00873 gnd 6-phosphoglucona 99.7 1.9E-15 4.1E-20 138.0 22.9 190 12-213 1-215 (467)
54 PRK06035 3-hydroxyacyl-CoA deh 99.7 2.8E-15 6.1E-20 130.0 21.5 154 9-171 2-186 (291)
55 PRK08293 3-hydroxybutyryl-CoA 99.7 6.2E-15 1.3E-19 127.6 21.6 157 9-174 2-188 (287)
56 PRK07530 3-hydroxybutyryl-CoA 99.7 4.1E-15 8.8E-20 129.1 20.5 155 8-171 2-184 (292)
57 PRK06522 2-dehydropantoate 2-r 99.7 7E-15 1.5E-19 128.3 21.3 245 11-270 1-295 (304)
58 PRK09260 3-hydroxybutyryl-CoA 99.7 9.3E-15 2E-19 126.6 20.6 152 11-171 2-182 (288)
59 PF03807 F420_oxidored: NADP o 99.7 1.9E-16 4E-21 114.5 8.4 79 12-91 1-81 (96)
60 PRK07066 3-hydroxybutyryl-CoA 99.7 2.9E-14 6.2E-19 124.2 21.2 187 8-214 5-221 (321)
61 PF10727 Rossmann-like: Rossma 99.6 7E-16 1.5E-20 116.1 6.5 125 1-129 1-127 (127)
62 PRK06444 prephenate dehydrogen 99.6 1.3E-14 2.8E-19 117.7 14.1 183 11-254 1-190 (197)
63 PRK06249 2-dehydropantoate 2-r 99.6 3.2E-13 6.9E-18 118.4 23.6 249 7-270 2-306 (313)
64 PRK08268 3-hydroxy-acyl-CoA de 99.6 1.6E-13 3.4E-18 127.2 22.5 153 9-171 6-187 (507)
65 PRK07819 3-hydroxybutyryl-CoA 99.6 2.4E-13 5.3E-18 117.4 21.5 153 9-171 4-187 (286)
66 PRK08229 2-dehydropantoate 2-r 99.6 1.7E-13 3.6E-18 121.6 20.3 147 10-168 2-173 (341)
67 PRK12439 NAD(P)H-dependent gly 99.6 1.6E-13 3.5E-18 121.5 19.7 154 9-172 6-184 (341)
68 PRK14620 NAD(P)H-dependent gly 99.6 3.3E-13 7.2E-18 119.0 21.0 156 11-172 1-179 (326)
69 TIGR01724 hmd_rel H2-forming N 99.6 4.2E-13 9.2E-18 114.4 20.4 207 11-228 1-252 (341)
70 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.6 5.2E-13 1.1E-17 123.4 21.9 153 9-171 4-185 (503)
71 PRK12921 2-dehydropantoate 2-r 99.6 1.3E-12 2.7E-17 114.2 23.0 155 11-172 1-177 (305)
72 COG2085 Predicted dinucleotide 99.5 9.9E-14 2.1E-18 111.6 12.9 151 10-171 1-180 (211)
73 TIGR03026 NDP-sugDHase nucleot 99.5 2.3E-13 4.9E-18 123.6 16.7 190 11-214 1-244 (411)
74 PRK14619 NAD(P)H-dependent gly 99.5 9.1E-13 2E-17 115.2 18.9 184 9-212 3-214 (308)
75 COG0240 GpsA Glycerol-3-phosph 99.5 1.3E-12 2.9E-17 112.2 19.1 157 10-173 1-179 (329)
76 COG1893 ApbA Ketopantoate redu 99.5 7.2E-12 1.6E-16 109.0 23.2 243 11-273 1-300 (307)
77 COG1023 Gnd Predicted 6-phosph 99.5 1.1E-11 2.4E-16 100.7 22.3 206 11-242 1-244 (300)
78 PF02737 3HCDH_N: 3-hydroxyacy 99.5 8.5E-13 1.8E-17 106.3 15.0 148 12-169 1-177 (180)
79 PRK11064 wecC UDP-N-acetyl-D-m 99.5 7.7E-13 1.7E-17 119.9 16.4 190 8-214 1-248 (415)
80 PRK09287 6-phosphogluconate de 99.5 1E-11 2.2E-16 113.2 22.6 182 21-213 1-207 (459)
81 PF01210 NAD_Gly3P_dh_N: NAD-d 99.5 7.7E-13 1.7E-17 104.3 11.6 114 12-138 1-142 (157)
82 PRK05708 2-dehydropantoate 2-r 99.5 1E-11 2.2E-16 108.4 19.4 237 10-269 2-293 (305)
83 PTZ00345 glycerol-3-phosphate 99.4 2.3E-11 4.9E-16 107.9 19.4 157 9-172 10-203 (365)
84 PRK13403 ketol-acid reductoiso 99.4 4.4E-11 9.6E-16 102.8 19.9 201 6-226 12-239 (335)
85 KOG2380 Prephenate dehydrogena 99.4 1.3E-11 2.9E-16 104.9 14.8 160 9-181 51-230 (480)
86 PRK15182 Vi polysaccharide bio 99.4 3.9E-11 8.4E-16 108.9 17.7 191 10-213 6-243 (425)
87 PRK11730 fadB multifunctional 99.4 6.1E-11 1.3E-15 114.3 19.9 153 9-171 312-493 (715)
88 TIGR02437 FadB fatty oxidation 99.4 6.7E-11 1.5E-15 113.8 19.8 154 8-171 311-493 (714)
89 TIGR02440 FadJ fatty oxidation 99.4 1E-10 2.2E-15 112.5 20.9 153 9-171 303-485 (699)
90 TIGR02441 fa_ox_alpha_mit fatt 99.4 6.4E-11 1.4E-15 114.3 18.9 154 8-171 333-515 (737)
91 TIGR03376 glycerol3P_DH glycer 99.3 1.2E-10 2.5E-15 102.6 18.6 154 12-172 1-194 (342)
92 COG1250 FadB 3-hydroxyacyl-CoA 99.3 2.4E-10 5.2E-15 98.3 19.1 154 8-171 1-183 (307)
93 PRK15057 UDP-glucose 6-dehydro 99.3 1.3E-10 2.8E-15 104.3 17.0 186 11-214 1-233 (388)
94 PRK11861 bifunctional prephena 99.3 3.7E-11 8E-16 115.4 13.2 184 75-274 1-213 (673)
95 PRK11154 fadJ multifunctional 99.3 3.6E-10 7.9E-15 109.0 19.9 153 9-171 308-490 (708)
96 PF02558 ApbA: Ketopantoate re 99.2 7.8E-11 1.7E-15 92.1 10.2 104 13-130 1-125 (151)
97 COG0059 IlvC Ketol-acid reduct 99.2 4.4E-09 9.5E-14 88.7 19.4 220 7-246 15-270 (338)
98 PRK05225 ketol-acid reductoiso 99.1 5.3E-09 1.1E-13 93.6 18.7 203 8-229 34-269 (487)
99 PF07991 IlvN: Acetohydroxy ac 99.1 2.8E-10 6.1E-15 88.0 9.0 140 9-164 3-160 (165)
100 KOG2304 3-hydroxyacyl-CoA dehy 99.1 7.4E-10 1.6E-14 89.4 8.4 160 1-169 2-194 (298)
101 COG0362 Gnd 6-phosphogluconate 99.0 3E-08 6.5E-13 86.4 17.7 185 9-211 2-217 (473)
102 PLN02353 probable UDP-glucose 99.0 3.4E-08 7.5E-13 90.7 17.7 195 10-213 1-251 (473)
103 PRK08269 3-hydroxybutyryl-CoA 99.0 6.5E-08 1.4E-12 84.7 18.1 175 21-214 1-216 (314)
104 COG1004 Ugd Predicted UDP-gluc 98.9 4.1E-07 8.9E-12 79.9 21.7 237 11-273 1-295 (414)
105 PRK13304 L-aspartate dehydroge 98.9 5.4E-09 1.2E-13 89.4 9.4 80 10-92 1-82 (265)
106 PRK13302 putative L-aspartate 98.9 6.5E-09 1.4E-13 89.1 9.8 80 8-92 4-88 (271)
107 PF03721 UDPG_MGDP_dh_N: UDP-g 98.9 3.6E-09 7.9E-14 85.4 7.4 65 11-80 1-85 (185)
108 PF01408 GFO_IDH_MocA: Oxidore 98.9 2.3E-08 5E-13 74.9 10.4 101 11-119 1-106 (120)
109 TIGR00745 apbA_panE 2-dehydrop 98.9 6.9E-07 1.5E-11 77.4 21.1 233 21-270 2-288 (293)
110 COG4007 Predicted dehydrogenas 98.8 3.1E-06 6.7E-11 70.0 20.5 208 10-228 1-253 (340)
111 cd01065 NAD_bind_Shikimate_DH 98.8 3.2E-08 6.9E-13 77.6 8.5 72 8-84 17-94 (155)
112 PRK12480 D-lactate dehydrogena 98.7 2.2E-07 4.7E-12 81.9 11.3 72 8-88 144-216 (330)
113 cd01075 NAD_bind_Leu_Phe_Val_D 98.6 5.4E-07 1.2E-11 73.8 12.1 79 7-91 25-106 (200)
114 PLN03139 formate dehydrogenase 98.6 2E-07 4.3E-12 83.4 10.0 108 8-120 197-306 (386)
115 PRK07574 formate dehydrogenase 98.6 1.6E-07 3.5E-12 84.0 7.4 77 8-89 190-267 (385)
116 PF02826 2-Hacid_dh_C: D-isome 98.6 2.4E-07 5.2E-12 74.5 7.5 68 8-81 34-101 (178)
117 TIGR02371 ala_DH_arch alanine 98.5 4.4E-07 9.6E-12 79.9 9.4 71 9-82 127-203 (325)
118 PRK06141 ornithine cyclodeamin 98.5 3.6E-07 7.9E-12 80.1 8.7 70 9-82 124-200 (314)
119 PF01488 Shikimate_DH: Shikima 98.5 2.4E-07 5.2E-12 71.0 6.3 71 8-82 10-86 (135)
120 COG1712 Predicted dinucleotide 98.5 6.5E-07 1.4E-11 72.6 8.8 81 11-93 1-82 (255)
121 TIGR02853 spore_dpaA dipicolin 98.5 4.1E-07 8.9E-12 78.6 7.7 72 7-83 148-221 (287)
122 PRK13243 glyoxylate reductase; 98.5 4.4E-07 9.4E-12 80.2 8.0 74 8-88 148-222 (333)
123 PRK00048 dihydrodipicolinate r 98.5 5.4E-07 1.2E-11 76.7 8.1 100 10-118 1-102 (257)
124 PF01113 DapB_N: Dihydrodipico 98.5 2.8E-07 6.1E-12 69.6 5.3 97 11-116 1-107 (124)
125 COG0677 WecC UDP-N-acetyl-D-ma 98.4 2.1E-05 4.5E-10 69.2 16.6 184 11-214 10-251 (436)
126 cd05213 NAD_bind_Glutamyl_tRNA 98.4 1.2E-06 2.7E-11 76.7 8.9 78 9-90 177-257 (311)
127 PRK15469 ghrA bifunctional gly 98.4 1.7E-06 3.6E-11 75.7 9.2 107 8-121 134-242 (312)
128 PRK08605 D-lactate dehydrogena 98.4 8.2E-07 1.8E-11 78.4 7.2 68 8-83 144-212 (332)
129 PRK08306 dipicolinate synthase 98.4 1.8E-06 3.9E-11 75.0 8.4 71 8-83 150-222 (296)
130 KOG2653 6-phosphogluconate deh 98.4 0.00016 3.6E-09 62.6 19.9 147 10-172 6-180 (487)
131 COG5495 Uncharacterized conser 98.3 1.8E-05 3.8E-10 64.6 13.1 238 10-258 10-257 (289)
132 TIGR01327 PGDH D-3-phosphoglyc 98.3 2.1E-06 4.5E-11 80.4 7.8 105 8-120 136-244 (525)
133 PRK06436 glycerate dehydrogena 98.3 1.5E-06 3.2E-11 75.6 6.3 70 8-88 120-191 (303)
134 PLN00203 glutamyl-tRNA reducta 98.3 3E-06 6.5E-11 78.7 8.4 80 8-91 264-352 (519)
135 COG0673 MviM Predicted dehydro 98.3 8E-06 1.7E-10 72.3 10.6 81 8-90 1-86 (342)
136 PRK07340 ornithine cyclodeamin 98.2 5.7E-06 1.2E-10 72.2 9.1 72 9-83 124-200 (304)
137 PRK13301 putative L-aspartate 98.2 4.7E-06 1E-10 70.2 8.0 81 10-92 2-83 (267)
138 PRK13303 L-aspartate dehydroge 98.2 5E-06 1.1E-10 71.1 8.4 80 10-92 1-82 (265)
139 PRK13581 D-3-phosphoglycerate 98.2 2.8E-06 6.1E-11 79.6 7.2 74 8-88 138-212 (526)
140 PRK14194 bifunctional 5,10-met 98.2 2.5E-06 5.4E-11 73.4 6.1 60 8-86 157-218 (301)
141 TIGR01921 DAP-DH diaminopimela 98.2 6.4E-06 1.4E-10 71.7 8.6 78 8-91 1-81 (324)
142 TIGR00036 dapB dihydrodipicoli 98.2 8.1E-06 1.8E-10 69.9 9.1 100 10-118 1-110 (266)
143 KOG2305 3-hydroxyacyl-CoA dehy 98.2 2.8E-05 6.1E-10 63.4 11.5 150 8-166 1-179 (313)
144 PF00056 Ldh_1_N: lactate/mala 98.2 6.7E-06 1.4E-10 63.5 7.7 66 11-79 1-77 (141)
145 PRK00257 erythronate-4-phospha 98.2 2.8E-06 6E-11 76.1 6.3 64 8-81 114-177 (381)
146 PRK06407 ornithine cyclodeamin 98.2 8.2E-06 1.8E-10 71.0 9.1 71 9-82 116-193 (301)
147 TIGR02992 ectoine_eutC ectoine 98.2 9.4E-06 2E-10 71.6 9.3 70 9-82 128-205 (326)
148 PRK13940 glutamyl-tRNA reducta 98.2 5.2E-06 1.1E-10 75.2 7.8 70 9-82 180-253 (414)
149 PRK08291 ectoine utilization p 98.2 9.2E-06 2E-10 71.8 9.0 71 9-82 131-208 (330)
150 PF02423 OCD_Mu_crystall: Orni 98.2 8E-06 1.7E-10 71.6 8.2 72 9-83 127-204 (313)
151 PRK06823 ornithine cyclodeamin 98.2 1.3E-05 2.8E-10 70.2 9.5 71 9-82 127-203 (315)
152 COG0373 HemA Glutamyl-tRNA red 98.1 6.9E-06 1.5E-10 73.5 7.6 68 9-80 177-247 (414)
153 TIGR01035 hemA glutamyl-tRNA r 98.1 7.5E-06 1.6E-10 74.6 7.6 69 9-81 179-250 (417)
154 PLN02928 oxidoreductase family 98.1 7E-06 1.5E-10 72.9 7.0 68 8-81 157-236 (347)
155 PRK00045 hemA glutamyl-tRNA re 98.1 9.1E-06 2E-10 74.2 7.8 69 9-81 181-252 (423)
156 PF00670 AdoHcyase_NAD: S-aden 98.1 2.2E-05 4.9E-10 61.3 8.8 78 8-91 21-100 (162)
157 COG0111 SerA Phosphoglycerate 98.1 6.3E-06 1.4E-10 72.3 6.4 74 9-88 141-215 (324)
158 COG1052 LdhA Lactate dehydroge 98.1 8.2E-06 1.8E-10 71.5 6.8 67 9-82 145-211 (324)
159 PRK08300 acetaldehyde dehydrog 98.1 3E-05 6.4E-10 67.0 10.0 83 7-92 1-91 (302)
160 cd05291 HicDH_like L-2-hydroxy 98.1 1.2E-05 2.7E-10 70.2 7.8 67 11-80 1-77 (306)
161 PRK11579 putative oxidoreducta 98.1 4.1E-05 8.8E-10 68.2 11.2 76 10-91 4-84 (346)
162 cd05292 LDH_2 A subgroup of L- 98.1 1.3E-05 2.7E-10 70.2 7.7 67 11-80 1-76 (308)
163 PRK06046 alanine dehydrogenase 98.1 1.9E-05 4.2E-10 69.6 8.8 71 9-83 128-205 (326)
164 PRK15438 erythronate-4-phospha 98.1 9.3E-06 2E-10 72.5 6.7 64 7-80 113-176 (378)
165 COG0569 TrkA K+ transport syst 98.0 2.7E-05 5.9E-10 64.9 8.9 76 11-91 1-86 (225)
166 PRK06199 ornithine cyclodeamin 98.0 2.4E-05 5.2E-10 70.2 9.0 71 9-81 154-233 (379)
167 PRK08618 ornithine cyclodeamin 98.0 2.6E-05 5.7E-10 68.7 9.0 72 9-83 126-204 (325)
168 PRK07589 ornithine cyclodeamin 98.0 2.6E-05 5.6E-10 69.0 8.8 72 9-83 128-205 (346)
169 COG2423 Predicted ornithine cy 98.0 3E-05 6.5E-10 67.9 9.0 72 9-83 129-207 (330)
170 COG1748 LYS9 Saccharopine dehy 98.0 2E-05 4.4E-10 70.2 8.0 78 10-91 1-88 (389)
171 PRK15409 bifunctional glyoxyla 98.0 1.7E-05 3.8E-10 69.7 7.2 67 8-81 143-210 (323)
172 cd05297 GH4_alpha_glucosidase_ 98.0 1.4E-05 3E-10 73.0 6.2 76 11-88 1-91 (423)
173 PRK11790 D-3-phosphoglycerate 98.0 1.5E-05 3.3E-10 72.3 6.4 72 8-88 149-221 (409)
174 PRK12549 shikimate 5-dehydroge 97.9 3.7E-05 8.1E-10 66.4 8.2 69 9-81 126-202 (284)
175 KOG2711 Glycerol-3-phosphate d 97.9 3.1E-05 6.6E-10 66.8 7.3 147 8-166 19-210 (372)
176 PRK14188 bifunctional 5,10-met 97.9 1.9E-05 4.2E-10 68.1 6.2 55 8-82 156-212 (296)
177 TIGR00507 aroE shikimate 5-deh 97.9 4.2E-05 9E-10 65.7 8.1 69 9-82 116-189 (270)
178 PRK04207 glyceraldehyde-3-phos 97.9 7.7E-05 1.7E-09 66.1 9.7 80 10-92 1-99 (341)
179 PRK10206 putative oxidoreducta 97.9 7.3E-05 1.6E-09 66.5 9.5 78 10-91 1-84 (344)
180 PRK00258 aroE shikimate 5-dehy 97.9 5E-05 1.1E-09 65.5 8.1 71 8-82 121-196 (278)
181 PTZ00075 Adenosylhomocysteinas 97.9 3.7E-05 8.1E-10 70.1 7.6 78 8-91 252-331 (476)
182 PRK08410 2-hydroxyacid dehydro 97.9 2.5E-05 5.5E-10 68.3 6.2 64 8-81 143-206 (311)
183 KOG0069 Glyoxylate/hydroxypyru 97.9 2.7E-05 5.9E-10 67.9 6.2 74 9-88 161-235 (336)
184 PRK06223 malate dehydrogenase; 97.9 4.7E-05 1E-09 66.6 7.8 65 10-79 2-78 (307)
185 PRK05476 S-adenosyl-L-homocyst 97.9 6.6E-05 1.4E-09 68.0 8.5 68 9-82 211-278 (425)
186 PLN02494 adenosylhomocysteinas 97.9 6.3E-05 1.4E-09 68.5 8.3 78 8-91 252-331 (477)
187 PF01118 Semialdhyde_dh: Semia 97.9 3.1E-05 6.8E-10 58.1 5.4 77 12-92 1-87 (121)
188 cd00401 AdoHcyase S-adenosyl-L 97.8 7E-05 1.5E-09 67.7 8.5 68 9-82 201-268 (413)
189 TIGR03215 ac_ald_DH_ac acetald 97.8 0.00011 2.4E-09 63.2 9.0 78 11-91 2-84 (285)
190 TIGR01761 thiaz-red thiazoliny 97.8 0.00018 3.9E-09 63.7 10.3 67 9-80 2-71 (343)
191 TIGR00936 ahcY adenosylhomocys 97.8 9.1E-05 2E-09 66.7 8.3 70 8-83 193-262 (406)
192 PRK09310 aroDE bifunctional 3- 97.8 8.5E-05 1.8E-09 68.9 8.3 70 8-83 330-402 (477)
193 PRK00066 ldh L-lactate dehydro 97.8 8.7E-05 1.9E-09 65.1 8.0 67 10-79 6-81 (315)
194 TIGR01763 MalateDH_bact malate 97.8 8.8E-05 1.9E-09 64.8 7.4 65 11-80 2-78 (305)
195 PTZ00082 L-lactate dehydrogena 97.7 0.00012 2.5E-09 64.5 8.0 66 9-79 5-82 (321)
196 TIGR01809 Shik-DH-AROM shikima 97.7 0.00014 3.1E-09 62.8 8.3 70 9-82 124-201 (282)
197 PRK06719 precorrin-2 dehydroge 97.7 0.00017 3.6E-09 56.7 7.9 84 1-91 2-90 (157)
198 PLN02306 hydroxypyruvate reduc 97.7 0.00011 2.3E-09 66.1 7.7 69 8-81 163-246 (386)
199 PTZ00117 malate dehydrogenase; 97.7 7.5E-05 1.6E-09 65.6 6.5 66 9-79 4-81 (319)
200 PRK09496 trkA potassium transp 97.7 0.00014 3.1E-09 66.9 8.6 71 11-86 1-80 (453)
201 PRK06932 glycerate dehydrogena 97.7 5.3E-05 1.1E-09 66.4 5.3 63 8-81 145-207 (314)
202 PRK06487 glycerate dehydrogena 97.7 8.3E-05 1.8E-09 65.3 6.4 62 8-81 146-207 (317)
203 PRK00961 H(2)-dependent methyl 97.7 0.0086 1.9E-07 50.5 17.7 162 58-228 128-301 (342)
204 PRK04148 hypothetical protein; 97.7 0.00034 7.3E-09 53.1 8.5 77 9-91 16-97 (134)
205 smart00859 Semialdhyde_dh Semi 97.7 0.00014 3.1E-09 54.5 6.5 76 12-91 1-85 (122)
206 PRK06718 precorrin-2 dehydroge 97.7 0.00037 8E-09 57.1 9.4 79 8-91 8-90 (202)
207 cd01078 NAD_bind_H4MPT_DH NADP 97.7 0.00014 3E-09 59.3 6.8 70 9-83 27-109 (194)
208 cd05293 LDH_1 A subgroup of L- 97.7 0.00016 3.6E-09 63.2 7.6 66 10-79 3-79 (312)
209 PRK05472 redox-sensing transcr 97.7 6.1E-05 1.3E-09 62.3 4.6 78 9-91 83-166 (213)
210 TIGR01723 hmd_TIGR 5,10-methen 97.6 0.0048 1E-07 52.1 15.5 163 58-228 126-299 (340)
211 PF13380 CoA_binding_2: CoA bi 97.6 0.00015 3.2E-09 54.0 5.7 75 11-95 1-79 (116)
212 PRK14179 bifunctional 5,10-met 97.6 0.00011 2.3E-09 63.0 5.3 60 8-86 156-217 (284)
213 cd01080 NAD_bind_m-THF_DH_Cycl 97.6 0.00016 3.4E-09 57.4 6.0 56 8-82 42-98 (168)
214 PRK15076 alpha-galactosidase; 97.6 0.00027 5.9E-09 64.6 8.2 71 10-81 1-85 (431)
215 cd05290 LDH_3 A subgroup of L- 97.6 0.00024 5.2E-09 62.0 7.5 65 12-79 1-76 (307)
216 PRK00683 murD UDP-N-acetylmura 97.6 0.0002 4.3E-09 65.4 7.0 69 8-81 1-69 (418)
217 PLN02602 lactate dehydrogenase 97.6 0.00033 7.2E-09 62.2 8.1 66 11-79 38-113 (350)
218 PF02629 CoA_binding: CoA bind 97.5 8.8E-05 1.9E-09 53.2 3.6 81 9-95 2-86 (96)
219 KOG2741 Dimeric dihydrodiol de 97.5 0.00092 2E-08 58.1 10.3 90 9-106 5-103 (351)
220 COG2910 Putative NADH-flavin r 97.5 0.00014 3.1E-09 57.5 4.8 66 11-81 1-72 (211)
221 PF02254 TrkA_N: TrkA-N domain 97.5 0.00074 1.6E-08 49.9 8.6 66 13-83 1-74 (116)
222 TIGR00518 alaDH alanine dehydr 97.5 0.00029 6.2E-09 63.3 7.4 65 10-79 167-238 (370)
223 PLN02819 lysine-ketoglutarate 97.5 0.00062 1.3E-08 68.1 10.2 81 10-91 569-668 (1042)
224 cd01487 E1_ThiF_like E1_ThiF_l 97.5 0.00061 1.3E-08 54.5 8.4 33 12-48 1-33 (174)
225 cd00650 LDH_MDH_like NAD-depen 97.5 0.00022 4.8E-09 61.0 6.0 66 13-79 1-78 (263)
226 COG0169 AroE Shikimate 5-dehyd 97.4 0.00066 1.4E-08 58.4 8.1 72 6-81 122-200 (283)
227 TIGR02356 adenyl_thiF thiazole 97.4 0.00094 2E-08 54.8 8.6 35 9-47 20-54 (202)
228 TIGR02354 thiF_fam2 thiamine b 97.4 0.00095 2.1E-08 54.6 8.5 35 9-47 20-54 (200)
229 PF13460 NAD_binding_10: NADH( 97.4 0.00031 6.6E-09 56.3 5.5 62 13-81 1-70 (183)
230 PRK02318 mannitol-1-phosphate 97.4 0.00045 9.8E-09 62.3 7.1 76 11-91 1-100 (381)
231 PF03435 Saccharop_dh: Sacchar 97.4 0.00053 1.2E-08 61.9 7.4 76 13-91 1-87 (386)
232 cd05191 NAD_bind_amino_acid_DH 97.4 0.00071 1.5E-08 47.4 6.4 46 8-83 21-66 (86)
233 PRK06349 homoserine dehydrogen 97.3 0.00051 1.1E-08 62.8 6.8 71 8-81 1-82 (426)
234 PRK10669 putative cation:proto 97.3 0.00077 1.7E-08 63.9 8.0 69 10-83 417-493 (558)
235 PRK12475 thiamine/molybdopteri 97.3 0.0009 2E-08 59.2 7.9 78 10-91 24-136 (338)
236 cd01339 LDH-like_MDH L-lactate 97.3 0.00062 1.3E-08 59.4 6.7 62 13-79 1-74 (300)
237 PTZ00325 malate dehydrogenase; 97.3 0.00064 1.4E-08 59.7 6.6 72 5-79 3-84 (321)
238 PRK00436 argC N-acetyl-gamma-g 97.3 0.00088 1.9E-08 59.5 7.3 79 10-92 2-89 (343)
239 PRK08644 thiamine biosynthesis 97.2 0.002 4.4E-08 53.2 8.7 35 9-47 27-61 (212)
240 COG1064 AdhP Zn-dependent alco 97.2 0.0019 4.2E-08 56.6 8.7 77 10-91 167-249 (339)
241 cd00300 LDH_like L-lactate deh 97.2 0.00075 1.6E-08 58.8 6.2 64 13-79 1-74 (300)
242 COG2344 AT-rich DNA-binding pr 97.2 0.00076 1.7E-08 53.5 5.4 79 9-92 83-167 (211)
243 PRK03659 glutathione-regulated 97.2 0.002 4.2E-08 61.7 9.3 69 10-83 400-476 (601)
244 PRK01390 murD UDP-N-acetylmura 97.2 0.0015 3.3E-08 60.5 8.2 65 9-78 8-72 (460)
245 PF13241 NAD_binding_7: Putati 97.2 0.0021 4.6E-08 46.6 7.4 73 9-90 6-79 (103)
246 PF05368 NmrA: NmrA-like famil 97.1 0.0015 3.2E-08 54.6 7.1 64 13-81 1-74 (233)
247 COG0039 Mdh Malate/lactate deh 97.1 0.001 2.2E-08 57.8 6.0 66 11-79 1-77 (313)
248 PRK00421 murC UDP-N-acetylmura 97.1 0.0023 4.9E-08 59.3 8.7 70 5-79 2-74 (461)
249 TIGR01850 argC N-acetyl-gamma- 97.1 0.0014 3.1E-08 58.2 7.0 78 11-92 1-89 (346)
250 TIGR01757 Malate-DH_plant mala 97.1 0.0019 4.1E-08 58.0 7.7 69 10-79 44-128 (387)
251 PRK00141 murD UDP-N-acetylmura 97.1 0.0022 4.9E-08 59.5 8.5 69 9-82 14-87 (473)
252 PRK03562 glutathione-regulated 97.1 0.003 6.5E-08 60.6 9.2 69 10-83 400-476 (621)
253 PRK01438 murD UDP-N-acetylmura 97.1 0.0029 6.2E-08 58.9 8.9 66 9-79 15-86 (480)
254 PRK14982 acyl-ACP reductase; P 97.1 0.0018 3.9E-08 57.1 7.1 67 9-80 154-224 (340)
255 COG0289 DapB Dihydrodipicolina 97.1 0.0038 8.2E-08 52.5 8.5 113 10-131 2-126 (266)
256 cd05294 LDH-like_MDH_nadp A la 97.1 0.0011 2.4E-08 58.0 5.6 65 11-79 1-80 (309)
257 PLN00112 malate dehydrogenase 97.1 0.0023 5.1E-08 58.4 7.9 70 9-79 99-184 (444)
258 CHL00194 ycf39 Ycf39; Provisio 97.1 0.0018 3.9E-08 56.8 7.1 65 11-80 1-73 (317)
259 cd01076 NAD_bind_1_Glu_DH NAD( 97.1 0.0035 7.6E-08 52.3 8.4 78 8-91 29-127 (227)
260 cd05311 NAD_bind_2_malic_enz N 97.0 0.002 4.3E-08 53.8 6.8 82 8-91 23-118 (226)
261 PRK12548 shikimate 5-dehydroge 97.0 0.0024 5.2E-08 55.4 7.5 69 9-81 125-209 (289)
262 PRK14106 murD UDP-N-acetylmura 97.0 0.0028 6.1E-08 58.4 8.4 68 8-80 3-77 (450)
263 cd01483 E1_enzyme_family Super 97.0 0.0045 9.8E-08 47.6 8.2 32 12-47 1-32 (143)
264 PRK05442 malate dehydrogenase; 97.0 0.0016 3.4E-08 57.4 6.1 70 9-79 3-88 (326)
265 cd01337 MDH_glyoxysomal_mitoch 97.0 0.0023 5E-08 55.9 7.1 66 11-79 1-76 (310)
266 PRK03369 murD UDP-N-acetylmura 97.0 0.0034 7.3E-08 58.6 8.6 65 10-79 12-78 (488)
267 PF00899 ThiF: ThiF family; I 97.0 0.0041 9E-08 47.4 7.5 77 10-90 2-111 (135)
268 TIGR01546 GAPDH-II_archae glyc 96.9 0.0028 6.1E-08 55.7 7.1 67 13-82 1-86 (333)
269 PRK01710 murD UDP-N-acetylmura 96.9 0.0038 8.1E-08 57.8 8.4 65 10-79 14-85 (458)
270 PRK14027 quinate/shikimate deh 96.9 0.0029 6.3E-08 54.6 7.1 68 9-80 126-203 (283)
271 cd01338 MDH_choloroplast_like 96.9 0.0016 3.5E-08 57.2 5.6 68 11-79 3-86 (322)
272 PRK09496 trkA potassium transp 96.9 0.0059 1.3E-07 56.3 9.6 70 9-83 230-309 (453)
273 PRK12749 quinate/shikimate deh 96.9 0.0046 1E-07 53.5 8.3 68 9-81 123-206 (288)
274 PRK05671 aspartate-semialdehyd 96.9 0.0025 5.3E-08 56.4 6.7 81 8-91 2-86 (336)
275 PRK12550 shikimate 5-dehydroge 96.9 0.0038 8.1E-08 53.6 7.6 65 11-81 123-188 (272)
276 TIGR02717 AcCoA-syn-alpha acet 96.9 0.0032 6.9E-08 58.0 7.6 79 10-96 7-89 (447)
277 TIGR01759 MalateDH-SF1 malate 96.9 0.0029 6.3E-08 55.6 7.0 69 10-79 3-87 (323)
278 PRK07688 thiamine/molybdopteri 96.9 0.0053 1.1E-07 54.4 8.6 79 9-91 23-136 (339)
279 PRK09424 pntA NAD(P) transhydr 96.9 0.0088 1.9E-07 55.7 10.2 46 10-60 165-210 (509)
280 cd05211 NAD_bind_Glu_Leu_Phe_V 96.9 0.0056 1.2E-07 50.7 8.0 81 7-91 20-118 (217)
281 PF10100 DUF2338: Uncharacteri 96.9 0.011 2.4E-07 52.5 10.1 156 10-169 1-199 (429)
282 TIGR01470 cysG_Nterm siroheme 96.8 0.012 2.5E-07 48.4 9.6 77 8-89 7-88 (205)
283 PF10728 DUF2520: Domain of un 96.8 0.015 3.2E-07 44.2 9.1 105 149-254 9-115 (132)
284 PRK06153 hypothetical protein; 96.8 0.0054 1.2E-07 54.7 7.7 78 10-91 176-286 (393)
285 TIGR01771 L-LDH-NAD L-lactate 96.8 0.0032 7E-08 54.8 6.2 62 15-79 1-72 (299)
286 TIGR00561 pntA NAD(P) transhyd 96.8 0.012 2.6E-07 54.7 10.2 77 10-91 164-274 (511)
287 PRK00676 hemA glutamyl-tRNA re 96.8 0.0035 7.5E-08 55.2 6.3 63 8-79 172-234 (338)
288 PF02056 Glyco_hydro_4: Family 96.8 0.0024 5.2E-08 51.2 4.9 72 12-84 1-86 (183)
289 PLN00106 malate dehydrogenase 96.7 0.0028 6.2E-08 55.7 5.6 67 10-79 18-94 (323)
290 PRK02006 murD UDP-N-acetylmura 96.7 0.0063 1.4E-07 57.0 8.0 68 9-81 6-81 (498)
291 PRK02472 murD UDP-N-acetylmura 96.7 0.0077 1.7E-07 55.5 8.5 66 9-79 4-76 (447)
292 cd01492 Aos1_SUMO Ubiquitin ac 96.7 0.0083 1.8E-07 49.0 7.7 34 10-47 21-54 (197)
293 PRK05086 malate dehydrogenase; 96.7 0.0034 7.3E-08 55.1 5.8 66 11-79 1-77 (312)
294 PRK14874 aspartate-semialdehyd 96.7 0.0038 8.3E-08 55.3 6.2 80 10-91 1-83 (334)
295 cd00704 MDH Malate dehydrogena 96.7 0.003 6.6E-08 55.6 5.3 68 11-79 1-84 (323)
296 PF03447 NAD_binding_3: Homose 96.7 0.0036 7.9E-08 46.4 4.9 82 17-106 1-90 (117)
297 cd01336 MDH_cytoplasmic_cytoso 96.6 0.0035 7.5E-08 55.3 5.4 68 11-79 3-86 (325)
298 PLN02968 Probable N-acetyl-gam 96.6 0.0071 1.5E-07 54.4 7.3 79 9-91 37-124 (381)
299 PRK08762 molybdopterin biosynt 96.6 0.011 2.3E-07 53.4 8.4 78 9-90 134-244 (376)
300 TIGR01082 murC UDP-N-acetylmur 96.6 0.0081 1.7E-07 55.4 7.7 63 12-79 1-66 (448)
301 PRK12809 putative oxidoreducta 96.6 0.0098 2.1E-07 57.4 8.5 67 9-80 309-404 (639)
302 PRK05597 molybdopterin biosynt 96.6 0.013 2.8E-07 52.4 8.6 77 10-90 28-137 (355)
303 PRK06270 homoserine dehydrogen 96.6 0.013 2.9E-07 52.0 8.7 70 10-82 2-100 (341)
304 PRK08664 aspartate-semialdehyd 96.6 0.0086 1.9E-07 53.4 7.4 79 9-91 2-96 (349)
305 cd01485 E1-1_like Ubiquitin ac 96.6 0.018 4E-07 47.0 8.8 34 10-47 19-52 (198)
306 PRK08328 hypothetical protein; 96.5 0.017 3.7E-07 48.4 8.8 35 10-48 27-61 (231)
307 PF14833 NAD_binding_11: NAD-b 96.5 0.019 4E-07 43.0 8.1 88 185-275 11-108 (122)
308 cd05197 GH4_glycoside_hydrolas 96.5 0.011 2.3E-07 54.1 8.0 71 11-82 1-85 (425)
309 COG1648 CysG Siroheme synthase 96.5 0.024 5.1E-07 46.7 9.1 85 1-91 1-92 (210)
310 PLN02775 Probable dihydrodipic 96.5 0.031 6.7E-07 48.0 10.0 110 2-120 3-124 (286)
311 PRK14175 bifunctional 5,10-met 96.5 0.0049 1.1E-07 53.0 5.2 56 7-81 155-211 (286)
312 TIGR01772 MDH_euk_gproteo mala 96.5 0.0048 1E-07 54.0 5.3 65 12-79 1-75 (312)
313 PRK12769 putative oxidoreducta 96.4 0.012 2.7E-07 56.9 8.3 68 8-80 325-421 (654)
314 PF01262 AlaDh_PNT_C: Alanine 96.4 0.0068 1.5E-07 48.1 5.4 49 5-58 15-63 (168)
315 PRK05600 thiamine biosynthesis 96.4 0.019 4.1E-07 51.5 8.7 78 10-91 41-151 (370)
316 TIGR02355 moeB molybdopterin s 96.4 0.0089 1.9E-07 50.4 6.2 34 10-47 24-57 (240)
317 TIGR01758 MDH_euk_cyt malate d 96.4 0.0076 1.7E-07 53.1 5.9 67 12-79 1-83 (324)
318 cd00757 ThiF_MoeB_HesA_family 96.3 0.0084 1.8E-07 50.1 5.8 34 9-46 20-53 (228)
319 PRK14573 bifunctional D-alanyl 96.3 0.016 3.4E-07 57.6 8.5 66 8-78 2-70 (809)
320 cd05298 GH4_GlvA_pagL_like Gly 96.3 0.017 3.7E-07 52.9 8.0 71 11-82 1-85 (437)
321 PLN02520 bifunctional 3-dehydr 96.3 0.013 2.9E-07 55.1 7.6 44 8-56 377-420 (529)
322 COG0002 ArgC Acetylglutamate s 96.3 0.012 2.6E-07 51.5 6.4 80 9-92 1-91 (349)
323 PRK05690 molybdopterin biosynt 96.3 0.012 2.5E-07 49.8 6.3 79 9-91 31-142 (245)
324 cd05296 GH4_P_beta_glucosidase 96.2 0.022 4.9E-07 51.9 8.3 70 11-81 1-85 (419)
325 TIGR01318 gltD_gamma_fam gluta 96.2 0.029 6.4E-07 52.0 9.1 66 9-79 140-234 (467)
326 PRK06728 aspartate-semialdehyd 96.2 0.016 3.5E-07 51.3 6.9 82 10-91 5-88 (347)
327 PLN02383 aspartate semialdehyd 96.2 0.015 3.2E-07 51.7 6.6 82 9-91 6-89 (344)
328 PLN00141 Tic62-NAD(P)-related 96.1 0.024 5.2E-07 47.9 7.6 67 9-80 16-94 (251)
329 COG1063 Tdh Threonine dehydrog 96.1 0.042 9.1E-07 49.0 9.3 74 12-89 171-257 (350)
330 PRK03803 murD UDP-N-acetylmura 96.1 0.019 4.2E-07 52.9 7.4 65 10-79 6-76 (448)
331 TIGR00978 asd_EA aspartate-sem 96.1 0.018 3.8E-07 51.2 6.8 78 11-91 1-93 (341)
332 PRK12814 putative NADPH-depend 96.1 0.022 4.8E-07 55.1 8.0 68 7-79 190-286 (652)
333 PLN03209 translocon at the inn 96.1 0.021 4.6E-07 53.7 7.5 42 9-55 79-121 (576)
334 PRK12771 putative glutamate sy 96.0 0.024 5.1E-07 54.0 7.9 69 7-80 134-231 (564)
335 PRK04308 murD UDP-N-acetylmura 96.0 0.028 6E-07 51.8 8.1 69 9-82 4-80 (445)
336 PRK08040 putative semialdehyde 96.0 0.014 3E-07 51.6 5.6 82 8-91 2-86 (336)
337 PRK05678 succinyl-CoA syntheta 95.9 0.058 1.3E-06 46.7 9.0 78 9-95 7-89 (291)
338 PRK14192 bifunctional 5,10-met 95.9 0.028 6.1E-07 48.5 7.1 54 8-80 157-211 (283)
339 TIGR01087 murD UDP-N-acetylmur 95.9 0.019 4E-07 52.7 6.2 63 12-79 1-70 (433)
340 COG0771 MurD UDP-N-acetylmuram 95.9 0.018 3.9E-07 52.6 5.9 68 10-82 7-82 (448)
341 PRK06598 aspartate-semialdehyd 95.9 0.019 4.2E-07 51.2 6.0 81 10-91 1-85 (369)
342 cd01486 Apg7 Apg7 is an E1-lik 95.9 0.017 3.6E-07 50.0 5.3 29 12-43 1-29 (307)
343 COG0026 PurK Phosphoribosylami 95.9 0.014 3E-07 51.5 4.8 74 10-88 1-82 (375)
344 PRK07411 hypothetical protein; 95.9 0.039 8.5E-07 49.9 8.0 78 10-91 38-148 (390)
345 TIGR01296 asd_B aspartate-semi 95.8 0.014 3.1E-07 51.7 5.0 78 12-91 1-81 (339)
346 PRK06182 short chain dehydroge 95.8 0.037 8E-07 47.2 7.4 46 9-59 2-48 (273)
347 PRK05562 precorrin-2 dehydroge 95.8 0.077 1.7E-06 44.0 8.8 83 4-91 17-105 (223)
348 PRK02705 murD UDP-N-acetylmura 95.8 0.037 8.1E-07 51.2 7.8 63 12-79 2-76 (459)
349 PRK12810 gltD glutamate syntha 95.7 0.055 1.2E-06 50.3 8.4 68 7-79 140-236 (471)
350 KOG0068 D-3-phosphoglycerate d 95.7 0.031 6.6E-07 48.7 6.1 64 10-80 146-209 (406)
351 cd01484 E1-2_like Ubiquitin ac 95.6 0.11 2.4E-06 43.6 9.1 31 12-46 1-31 (234)
352 PRK15116 sulfur acceptor prote 95.6 0.12 2.5E-06 44.3 9.3 35 9-47 29-63 (268)
353 COG0136 Asd Aspartate-semialde 95.5 0.082 1.8E-06 46.3 8.4 82 10-92 1-87 (334)
354 PRK11863 N-acetyl-gamma-glutam 95.5 0.021 4.6E-07 49.9 4.8 68 10-91 2-70 (313)
355 COG1486 CelF Alpha-galactosida 95.5 0.044 9.5E-07 49.7 6.9 77 8-85 1-91 (442)
356 PRK10637 cysG siroheme synthas 95.5 0.1 2.2E-06 48.3 9.6 83 1-88 1-89 (457)
357 PLN02427 UDP-apiose/xylose syn 95.5 0.03 6.4E-07 50.5 5.9 67 8-79 12-94 (386)
358 COG0460 ThrA Homoserine dehydr 95.5 0.057 1.2E-06 47.3 7.3 74 8-81 1-88 (333)
359 cd01491 Ube1_repeat1 Ubiquitin 95.5 0.088 1.9E-06 45.5 8.3 71 9-83 18-117 (286)
360 PRK11908 NAD-dependent epimera 95.5 0.036 7.8E-07 49.2 6.2 63 10-77 1-74 (347)
361 TIGR03466 HpnA hopanoid-associ 95.5 0.019 4.1E-07 50.1 4.4 64 11-79 1-72 (328)
362 PRK03806 murD UDP-N-acetylmura 95.4 0.067 1.5E-06 49.2 8.1 64 10-79 6-73 (438)
363 PRK07878 molybdopterin biosynt 95.4 0.067 1.5E-06 48.5 7.9 78 10-91 42-152 (392)
364 TIGR01019 sucCoAalpha succinyl 95.4 0.11 2.5E-06 44.8 8.8 79 9-95 5-87 (286)
365 COG0300 DltE Short-chain dehyd 95.4 0.054 1.2E-06 46.1 6.7 46 6-56 2-48 (265)
366 PLN02477 glutamate dehydrogena 95.4 0.083 1.8E-06 48.0 8.2 78 8-91 204-302 (410)
367 PRK14189 bifunctional 5,10-met 95.4 0.043 9.3E-07 47.2 6.1 55 8-81 156-211 (285)
368 PRK08374 homoserine dehydrogen 95.3 0.033 7.2E-07 49.4 5.4 92 10-108 2-124 (336)
369 PRK03815 murD UDP-N-acetylmura 95.3 0.041 8.8E-07 50.0 6.0 63 11-82 1-67 (401)
370 TIGR03366 HpnZ_proposed putati 95.3 0.11 2.3E-06 44.7 8.4 47 10-60 121-167 (280)
371 PF00185 OTCace: Aspartate/orn 95.3 0.1 2.2E-06 41.0 7.5 67 10-81 2-83 (158)
372 cd08230 glucose_DH Glucose deh 95.2 0.13 2.9E-06 45.6 9.1 77 10-91 173-259 (355)
373 PRK04663 murD UDP-N-acetylmura 95.2 0.058 1.3E-06 49.6 6.9 64 10-79 7-76 (438)
374 PLN02695 GDP-D-mannose-3',5'-e 95.2 0.022 4.7E-07 51.2 4.0 38 6-48 17-55 (370)
375 TIGR01081 mpl UDP-N-acetylmura 95.2 0.073 1.6E-06 49.1 7.5 66 12-82 1-73 (448)
376 PLN02172 flavin-containing mon 95.2 0.034 7.4E-07 51.5 5.3 40 3-47 3-42 (461)
377 PRK06113 7-alpha-hydroxysteroi 95.2 0.078 1.7E-06 44.7 7.1 50 1-55 1-52 (255)
378 TIGR01317 GOGAT_sm_gam glutama 95.2 0.1 2.2E-06 48.8 8.4 66 9-79 142-236 (485)
379 COG1090 Predicted nucleoside-d 95.2 0.027 6E-07 47.7 4.1 56 17-77 6-62 (297)
380 PLN02896 cinnamyl-alcohol dehy 95.1 0.078 1.7E-06 47.2 7.4 69 6-79 6-87 (353)
381 TIGR03649 ergot_EASG ergot alk 95.1 0.028 6.2E-07 48.3 4.4 62 12-81 1-77 (285)
382 KOG0022 Alcohol dehydrogenase, 95.1 0.13 2.8E-06 44.6 8.0 53 10-66 193-245 (375)
383 PRK10792 bifunctional 5,10-met 95.1 0.064 1.4E-06 46.2 6.2 55 7-80 156-211 (285)
384 PLN02948 phosphoribosylaminoim 95.1 0.088 1.9E-06 50.2 7.8 72 4-80 15-92 (577)
385 TIGR01316 gltA glutamate synth 95.1 0.12 2.7E-06 47.6 8.7 38 5-47 128-165 (449)
386 KOG1502 Flavonol reductase/cin 95.1 0.062 1.3E-06 47.0 6.2 67 9-80 5-87 (327)
387 PLN02686 cinnamoyl-CoA reducta 95.1 0.07 1.5E-06 47.9 6.8 45 5-54 48-93 (367)
388 cd01489 Uba2_SUMO Ubiquitin ac 95.0 0.069 1.5E-06 46.7 6.5 76 12-91 1-110 (312)
389 PRK04690 murD UDP-N-acetylmura 95.0 0.11 2.3E-06 48.4 8.1 69 9-82 7-82 (468)
390 PRK06183 mhpA 3-(3-hydroxyphen 95.0 0.038 8.2E-07 52.3 5.2 43 1-48 1-43 (538)
391 smart00846 Gp_dh_N Glyceraldeh 95.0 0.076 1.6E-06 41.3 6.0 42 11-56 1-44 (149)
392 COG0686 Ald Alanine dehydrogen 95.0 0.075 1.6E-06 45.9 6.4 77 10-91 168-258 (371)
393 PRK08163 salicylate hydroxylas 95.0 0.035 7.6E-07 50.1 4.7 36 9-49 3-38 (396)
394 PRK08017 oxidoreductase; Provi 95.0 0.08 1.7E-06 44.5 6.6 44 11-59 3-47 (256)
395 COG4074 Mth H2-forming N5,N10- 94.9 1.7 3.7E-05 35.8 13.6 161 58-227 126-298 (343)
396 PTZ00187 succinyl-CoA syntheta 94.9 0.21 4.5E-06 43.7 9.0 86 3-95 20-112 (317)
397 TIGR02130 dapB_plant dihydrodi 94.9 0.2 4.2E-06 42.9 8.6 100 11-119 1-112 (275)
398 PF00070 Pyr_redox: Pyridine n 94.9 0.055 1.2E-06 37.0 4.4 32 12-48 1-32 (80)
399 PF03720 UDPG_MGDP_dh_C: UDP-g 94.8 0.082 1.8E-06 38.5 5.5 61 21-86 18-81 (106)
400 COG4408 Uncharacterized protei 94.7 0.5 1.1E-05 41.2 10.6 155 9-168 3-199 (431)
401 PRK12409 D-amino acid dehydrog 94.7 0.043 9.4E-07 49.8 4.7 33 11-48 2-34 (410)
402 PRK01368 murD UDP-N-acetylmura 94.7 0.11 2.5E-06 48.0 7.4 64 9-78 5-70 (454)
403 TIGR03855 NAD_NadX aspartate d 94.7 0.089 1.9E-06 43.9 6.0 52 41-93 6-59 (229)
404 KOG0399 Glutamate synthase [Am 94.6 0.13 2.8E-06 51.7 7.7 71 4-79 1779-1878(2142)
405 PRK05993 short chain dehydroge 94.6 0.12 2.7E-06 44.1 7.1 44 11-59 5-49 (277)
406 COG1062 AdhC Zn-dependent alco 94.6 0.23 5E-06 43.5 8.5 47 11-61 187-233 (366)
407 PRK11749 dihydropyrimidine deh 94.6 0.19 4.2E-06 46.4 8.7 35 8-47 138-172 (457)
408 KOG3007 Mu-crystallin [Amino a 94.6 0.11 2.4E-06 43.9 6.2 70 10-81 138-217 (333)
409 PRK05717 oxidoreductase; Valid 94.6 0.14 3E-06 43.1 7.2 50 1-55 1-51 (255)
410 PLN02662 cinnamyl-alcohol dehy 94.6 0.11 2.5E-06 45.2 6.9 67 9-80 3-85 (322)
411 PRK07236 hypothetical protein; 94.6 0.052 1.1E-06 48.9 4.7 37 8-49 4-40 (386)
412 PRK07364 2-octaprenyl-6-methox 94.5 0.057 1.2E-06 49.0 5.0 42 3-49 10-52 (415)
413 COG0702 Predicted nucleoside-d 94.5 0.12 2.5E-06 43.9 6.6 64 11-80 1-72 (275)
414 TIGR01851 argC_other N-acetyl- 94.5 0.13 2.7E-06 44.9 6.7 67 11-91 2-69 (310)
415 PLN02657 3,8-divinyl protochlo 94.5 0.036 7.9E-07 50.2 3.6 38 8-50 58-96 (390)
416 PRK13984 putative oxidoreducta 94.5 0.21 4.6E-06 47.9 9.0 69 7-80 280-377 (604)
417 TIGR00670 asp_carb_tr aspartat 94.5 0.24 5.2E-06 43.2 8.4 66 8-78 148-223 (301)
418 PRK06180 short chain dehydroge 94.4 0.12 2.5E-06 44.3 6.4 43 9-56 3-46 (277)
419 PRK08703 short chain dehydroge 94.4 0.13 2.8E-06 42.8 6.5 44 7-55 3-47 (239)
420 PRK12779 putative bifunctional 94.3 0.15 3.1E-06 51.5 7.6 66 9-79 305-400 (944)
421 PRK06124 gluconate 5-dehydroge 94.3 0.17 3.6E-06 42.6 7.1 50 1-55 1-52 (256)
422 PLN00198 anthocyanidin reducta 94.3 0.11 2.4E-06 45.8 6.2 40 6-50 5-45 (338)
423 PRK05868 hypothetical protein; 94.3 0.06 1.3E-06 48.4 4.5 35 10-49 1-35 (372)
424 PRK07523 gluconate 5-dehydroge 94.3 0.16 3.4E-06 42.7 6.9 43 8-55 8-51 (255)
425 PRK06847 hypothetical protein; 94.3 0.064 1.4E-06 48.0 4.6 36 9-49 3-38 (375)
426 PLN02650 dihydroflavonol-4-red 94.3 0.12 2.6E-06 45.8 6.4 67 8-79 3-85 (351)
427 PRK06019 phosphoribosylaminoim 94.2 0.11 2.4E-06 46.7 6.1 63 10-77 2-69 (372)
428 PRK06753 hypothetical protein; 94.2 0.061 1.3E-06 48.1 4.4 34 11-49 1-34 (373)
429 KOG1209 1-Acyl dihydroxyaceton 94.2 0.13 2.7E-06 42.2 5.6 68 8-92 5-75 (289)
430 PRK14176 bifunctional 5,10-met 94.2 0.091 2E-06 45.2 5.0 53 8-79 162-215 (287)
431 PRK05884 short chain dehydroge 94.1 0.14 3E-06 42.4 6.0 41 11-56 1-42 (223)
432 PRK07326 short chain dehydroge 94.1 0.15 3.2E-06 42.3 6.2 43 9-56 5-48 (237)
433 PRK05653 fabG 3-ketoacyl-(acyl 94.1 0.16 3.4E-06 42.2 6.4 41 9-54 4-45 (246)
434 TIGR03693 ocin_ThiF_like putat 94.1 0.16 3.5E-06 48.0 6.8 71 10-83 129-216 (637)
435 KOG1495 Lactate dehydrogenase 94.1 0.17 3.6E-06 42.9 6.2 68 8-79 18-96 (332)
436 PRK07060 short chain dehydroge 94.0 0.17 3.7E-06 42.1 6.5 44 8-56 7-51 (245)
437 PRK12826 3-ketoacyl-(acyl-carr 94.0 0.16 3.6E-06 42.3 6.4 42 8-54 4-46 (251)
438 PRK07775 short chain dehydroge 94.0 0.22 4.8E-06 42.5 7.3 49 1-54 1-50 (274)
439 PRK09414 glutamate dehydrogena 94.0 0.28 6E-06 45.1 8.2 79 8-91 230-332 (445)
440 cd05212 NAD_bind_m-THF_DH_Cycl 94.0 0.22 4.8E-06 38.2 6.5 43 38-81 29-81 (140)
441 COG4569 MhpF Acetaldehyde dehy 94.0 0.19 4.2E-06 40.6 6.2 77 9-86 3-86 (310)
442 COG0493 GltD NADPH-dependent g 94.0 0.18 3.8E-06 46.6 6.9 66 9-79 122-216 (457)
443 PRK08013 oxidoreductase; Provi 94.0 0.075 1.6E-06 48.2 4.5 37 8-49 1-37 (400)
444 PF02882 THF_DHG_CYH_C: Tetrah 94.0 0.19 4E-06 39.5 6.1 54 8-80 34-88 (160)
445 cd00755 YgdL_like Family of ac 94.0 0.1 2.2E-06 43.6 5.0 35 9-47 10-44 (231)
446 PRK07454 short chain dehydroge 93.9 0.19 4.1E-06 41.8 6.6 42 9-55 5-47 (241)
447 PRK08306 dipicolinate synthase 93.9 0.15 3.3E-06 44.3 6.2 64 10-81 2-65 (296)
448 PRK05732 2-octaprenyl-6-methox 93.9 0.085 1.8E-06 47.5 4.8 35 8-47 1-38 (395)
449 PRK08849 2-octaprenyl-3-methyl 93.9 0.088 1.9E-06 47.5 4.8 36 8-48 1-36 (384)
450 PRK00711 D-amino acid dehydrog 93.9 0.088 1.9E-06 47.8 4.8 34 11-49 1-34 (416)
451 PRK09880 L-idonate 5-dehydroge 93.9 0.39 8.5E-06 42.5 8.8 77 10-90 170-255 (343)
452 PRK14191 bifunctional 5,10-met 93.9 0.22 4.8E-06 42.9 6.8 54 8-80 155-209 (285)
453 PRK10538 malonic semialdehyde 93.8 0.17 3.6E-06 42.5 6.1 41 11-56 1-42 (248)
454 TIGR01745 asd_gamma aspartate- 93.8 0.12 2.7E-06 46.0 5.3 82 11-92 1-85 (366)
455 PRK07231 fabG 3-ketoacyl-(acyl 93.8 0.19 4E-06 42.0 6.3 42 9-55 4-46 (251)
456 PRK06057 short chain dehydroge 93.8 0.2 4.3E-06 42.2 6.4 44 8-56 5-49 (255)
457 COG0499 SAM1 S-adenosylhomocys 93.7 0.2 4.3E-06 44.2 6.2 68 10-83 209-276 (420)
458 PRK12429 3-hydroxybutyrate deh 93.7 0.22 4.7E-06 41.8 6.5 43 8-55 2-45 (258)
459 PLN02214 cinnamoyl-CoA reducta 93.6 0.22 4.8E-06 44.2 6.8 67 9-80 9-90 (342)
460 PRK07538 hypothetical protein; 93.6 0.086 1.9E-06 48.0 4.2 34 11-49 1-34 (413)
461 PRK08773 2-octaprenyl-3-methyl 93.6 0.12 2.5E-06 46.7 5.0 36 8-48 4-39 (392)
462 PRK07102 short chain dehydroge 93.6 0.21 4.5E-06 41.7 6.2 41 10-55 1-42 (243)
463 PRK08277 D-mannonate oxidoredu 93.6 0.25 5.4E-06 42.1 6.8 43 8-55 8-51 (278)
464 cd05313 NAD_bind_2_Glu_DH NAD( 93.6 0.21 4.5E-06 42.4 6.0 33 8-45 36-69 (254)
465 PRK08267 short chain dehydroge 93.5 0.2 4.4E-06 42.2 6.1 41 11-56 2-43 (260)
466 PRK14031 glutamate dehydrogena 93.5 0.49 1.1E-05 43.4 8.8 78 8-91 226-331 (444)
467 PRK12939 short chain dehydroge 93.5 0.23 5E-06 41.4 6.4 43 8-55 5-48 (250)
468 PF13450 NAD_binding_8: NAD(P) 93.5 0.12 2.6E-06 34.3 3.7 29 15-48 1-29 (68)
469 TIGR01532 E4PD_g-proteo D-eryt 93.5 0.36 7.8E-06 42.5 7.6 80 12-91 1-109 (325)
470 PRK05866 short chain dehydroge 93.4 0.25 5.3E-06 42.8 6.5 43 9-56 39-82 (293)
471 KOG1399 Flavin-containing mono 93.4 0.099 2.1E-06 48.1 4.2 35 8-47 4-38 (448)
472 cd08239 THR_DH_like L-threonin 93.3 0.59 1.3E-05 41.1 9.0 68 10-82 164-242 (339)
473 PRK07877 hypothetical protein; 93.3 0.4 8.6E-06 46.8 8.4 77 10-90 107-215 (722)
474 PRK07588 hypothetical protein; 93.3 0.11 2.3E-06 47.0 4.3 34 11-49 1-34 (391)
475 PRK09853 putative selenate red 93.3 0.36 7.8E-06 48.8 8.2 35 8-47 537-571 (1019)
476 PRK07814 short chain dehydroge 93.3 0.3 6.6E-06 41.3 6.9 44 8-56 8-52 (263)
477 PRK06949 short chain dehydroge 93.3 0.29 6.3E-06 41.1 6.7 44 8-56 7-51 (258)
478 COG0773 MurC UDP-N-acetylmuram 93.3 0.3 6.6E-06 44.6 7.0 65 10-79 7-74 (459)
479 PF01494 FAD_binding_3: FAD bi 93.2 0.11 2.3E-06 45.7 4.1 34 11-49 2-35 (356)
480 PLN02527 aspartate carbamoyltr 93.2 0.56 1.2E-05 41.0 8.4 65 9-78 150-225 (306)
481 PRK12829 short chain dehydroge 93.2 0.25 5.4E-06 41.6 6.2 44 8-56 9-53 (264)
482 PRK07494 2-octaprenyl-6-methox 93.2 0.13 2.7E-06 46.4 4.6 35 9-48 6-40 (388)
483 TIGR03325 BphB_TodD cis-2,3-di 93.2 0.26 5.7E-06 41.7 6.3 43 9-56 4-47 (262)
484 PRK09242 tropinone reductase; 93.2 0.31 6.6E-06 41.0 6.7 46 5-55 4-50 (257)
485 PLN03075 nicotianamine synthas 93.2 0.68 1.5E-05 40.2 8.8 80 9-91 123-219 (296)
486 PRK08223 hypothetical protein; 93.2 0.15 3.2E-06 44.0 4.7 34 10-47 27-60 (287)
487 TIGR03589 PseB UDP-N-acetylglu 93.2 0.27 6E-06 43.2 6.6 66 9-79 3-82 (324)
488 cd08237 ribitol-5-phosphate_DH 93.2 0.45 9.7E-06 42.1 8.0 65 10-80 164-231 (341)
489 PRK08309 short chain dehydroge 93.2 0.29 6.3E-06 39.2 6.1 41 11-56 1-41 (177)
490 PRK07774 short chain dehydroge 93.2 0.29 6.3E-06 40.9 6.5 41 9-54 5-46 (250)
491 PLN00016 RNA-binding protein; 93.1 0.16 3.5E-06 45.7 5.1 78 9-91 51-152 (378)
492 KOG1370 S-adenosylhomocysteine 93.1 0.27 5.9E-06 42.4 6.0 74 12-91 215-291 (434)
493 PRK13394 3-hydroxybutyrate deh 93.1 0.28 6.1E-06 41.2 6.3 42 9-55 6-48 (262)
494 PLN02989 cinnamyl-alcohol dehy 93.1 0.27 5.9E-06 43.0 6.4 65 10-79 5-85 (325)
495 PRK11891 aspartate carbamoyltr 93.1 0.55 1.2E-05 42.9 8.4 67 8-79 239-316 (429)
496 PRK07825 short chain dehydroge 93.1 0.3 6.5E-06 41.5 6.5 43 9-56 4-47 (273)
497 TIGR02822 adh_fam_2 zinc-bindi 93.1 0.62 1.3E-05 41.0 8.6 66 10-80 166-232 (329)
498 cd05188 MDR Medium chain reduc 93.0 0.85 1.9E-05 38.1 9.2 78 9-91 134-222 (271)
499 PRK07045 putative monooxygenas 93.0 0.13 2.8E-06 46.4 4.3 36 9-49 4-39 (388)
500 TIGR03219 salicylate_mono sali 93.0 0.13 2.8E-06 46.9 4.3 34 11-49 1-35 (414)
No 1
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-57 Score=378.26 Aligned_cols=263 Identities=46% Similarity=0.709 Sum_probs=243.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCcccHHHHH
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAV 88 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl 88 (276)
++||||||+|+||.+|+.+|+++|.+++.+|+++ +|++++++.+.+ +|+..+.++.+++.++|+|||||||+++.+++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~-~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKPq~~~~vl 79 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVT-NRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKPQDLEEVL 79 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEe-CCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeChHhHHHHH
Confidence 4799999999999999999999996678899999 999999975555 77776677788999999999999999999999
Q ss_pred HHHhhccccccCCcccCCCCcccHHHHHHHcCCCcEEEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCceEE
Q 023866 89 ITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWR 168 (276)
Q Consensus 89 ~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~~~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~~~ 168 (276)
.++. ++.+++.+++--+|+ +++.|++++++.+++|+|||+|+.++.|++.++.+.++++++.+.+.++|+++|.+++
T Consensus 80 ~~l~--~~~~~~lvISiaAGv-~~~~l~~~l~~~~vvR~MPNt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~~G~v~~ 156 (266)
T COG0345 80 SKLK--PLTKDKLVISIAAGV-SIETLERLLGGLRVVRVMPNTPALVGAGVTAISANANVSEEDKAFVEALLSAVGKVVE 156 (266)
T ss_pred HHhh--cccCCCEEEEEeCCC-CHHHHHHHcCCCceEEeCCChHHHHcCcceeeecCccCCHHHHHHHHHHHHhcCCeEE
Confidence 9993 122223455555999 9999999999889999999999999999999999999999999999999999999988
Q ss_pred cCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHH
Q 023866 169 ADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG 248 (276)
Q Consensus 169 ~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~~ 248 (276)
++|+++|.+++++||+|+|++.++++|.+++++.|+|++++++++.+++.|+++++.+++.+|..|++.|+||||+|++|
T Consensus 157 v~E~~~da~TaisGSgPAyv~~~iEal~~agv~~Gl~~~~A~~l~~~t~~Gaakll~e~~~~p~~Lr~~VtSPGGtTiag 236 (266)
T COG0345 157 VEESLMDAVTALSGSGPAYVFLFIEALADAGVRLGLPREEARELAAQTVAGAAKLLLESGEHPAELRDQVTSPGGTTIAG 236 (266)
T ss_pred echHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCcCCCchHHHH
Confidence 88999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred HHHHHhCChHHHHHHHHHHHHHHHhhcC
Q 023866 249 IHELEKSGFRGILMNAVVAAAKRSRELS 276 (276)
Q Consensus 249 l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 276 (276)
|+.|++.+|+.++.+|++++++|++||+
T Consensus 237 l~~le~~g~~~~v~~av~aa~~r~~el~ 264 (266)
T COG0345 237 LRVLEEDGFRGAVIEAVEAAYKRSEELG 264 (266)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999985
No 2
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=100.00 E-value=1.3e-55 Score=376.82 Aligned_cols=263 Identities=33% Similarity=0.555 Sum_probs=241.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCcccHHHHHH
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAVI 89 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl~ 89 (276)
+||+|||+|+||.+|+.+|+++|+..+.+|++| +|++++++.+.+ .|+..+.++.+++++||+||+||||+++.+++.
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~-~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP~~~~~vl~ 81 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICS-DLNVSNLKNASDKYGITITTNNNEVANSADILILSIKPDLYSSVIN 81 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEE-CCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeChHHHHHHHH
Confidence 589999999999999999999997667789999 999999988876 788777788888999999999999999999998
Q ss_pred HHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCceEE
Q 023866 90 TEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWR 168 (276)
Q Consensus 90 ~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~~~ 168 (276)
++.. .++++.-+++-.+|+ ++++|+++++ ..+++|+|||+|..+|+|++.++++++.++++.+.++.+|+++|.+++
T Consensus 82 ~l~~-~~~~~~lvISi~AGi-~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~ 159 (272)
T PRK12491 82 QIKD-QIKNDVIVVTIAAGK-SIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNEMVTEKDIKEVLNIFNIFGQTEV 159 (272)
T ss_pred HHHH-hhcCCcEEEEeCCCC-cHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHcCCCEEE
Confidence 8821 111112234555999 9999999997 368999999999999999999999999999999999999999999988
Q ss_pred cCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHH
Q 023866 169 ADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG 248 (276)
Q Consensus 169 ~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~~ 248 (276)
++|+++|.+++++||+|+|++.++++|.+++++.|++++++++++.+++.|+++++.+++.+|.++++.|+||||+|++|
T Consensus 160 ~~E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~~t~~G~a~ll~~~~~~p~~l~~~V~sPGGtT~~g 239 (272)
T PRK12491 160 VNEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQAVLGSAKMVLETGIHPGELKDMVCSPGGTTIEA 239 (272)
T ss_pred EcHHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCchHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred HHHHHhCChHHHHHHHHHHHHHHHhhcC
Q 023866 249 IHELEKSGFRGILMNAVVAAAKRSRELS 276 (276)
Q Consensus 249 l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 276 (276)
|+.|++++++..+.+|++++++|++||+
T Consensus 240 l~~le~~~~~~~~~~av~aa~~r~~el~ 267 (272)
T PRK12491 240 VATLEEKGLRTAIISAMKRCTQKSMEMS 267 (272)
T ss_pred HHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999985
No 3
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=100.00 E-value=7.8e-51 Score=346.40 Aligned_cols=259 Identities=35% Similarity=0.559 Sum_probs=232.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHH
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAA 87 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~v 87 (276)
|+.|||+|||+|+||++|+.+|.+++...+++|+++ +|++++. +.....++.++++++|+||+||||+++.++
T Consensus 1 ~~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~-~~~~~~~------~~~~~~~~~~~~~~~D~Vilavkp~~~~~v 73 (260)
T PTZ00431 1 MENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYH-TPSKKNT------PFVYLQSNEELAKTCDIIVLAVKPDLAGKV 73 (260)
T ss_pred CCCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEE-CCChhcC------CeEEeCChHHHHHhCCEEEEEeCHHHHHHH
Confidence 567899999999999999999999986566679999 9987542 444556777888899999999999999999
Q ss_pred HHHHhhccccccCCcccCCCCcccHHHHHHHcCC-CcEEEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCce
Q 023866 88 VITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGH-SRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI 166 (276)
Q Consensus 88 l~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~~-~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~ 166 (276)
+.++.. -+ +.+.+++..+|+ +.+.++++++. .+++|+|||+|..+++|.+.+++.++.+++..+.++++|+.+|.+
T Consensus 74 l~~i~~-~l-~~~~iIS~~aGi-~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~~~~~~~~~~v~~l~~~~G~~ 150 (260)
T PTZ00431 74 LLEIKP-YL-GSKLLISICGGL-NLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANNNVDSTDKKKVIDIFSACGII 150 (260)
T ss_pred HHHHHh-hc-cCCEEEEEeCCc-cHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCCCCCHHHHHHHHHHHHhCCcE
Confidence 999821 01 113344555999 99999999873 578999999999999999999988888899999999999999999
Q ss_pred EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHH
Q 023866 167 WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI 246 (276)
Q Consensus 167 ~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~ 246 (276)
++++|+++|.+++++||+|+|++.++++|++++++.|++++++++++.+++.|+++++.+++.+|.++++.|+||||+|+
T Consensus 151 ~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~~v~~Gl~~~~a~~l~~~~~~G~a~ll~~~~~~~~~l~~~v~spgG~T~ 230 (260)
T PTZ00431 151 QEIKEKDMDIATAISGCGPAYVFLFIESLIDAGVKNGLNRDVSKNLVLQTILGSVHMVKASDQPVQQLKDDVCSPGGITI 230 (260)
T ss_pred EEEChHHcchhhhhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCChHHH
Confidence 88899999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHhhcC
Q 023866 247 AGIHELEKSGFRGILMNAVVAAAKRSRELS 276 (276)
Q Consensus 247 ~~l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 276 (276)
+||+.|++.||+..+.+|++++++|++||+
T Consensus 231 ~gl~~le~~g~~~~~~~a~~aa~~r~~~l~ 260 (260)
T PTZ00431 231 VGLYTLEKHAFKYTVMDAVESACQKSKSMH 260 (260)
T ss_pred HHHHHHHHCChHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999985
No 4
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=100.00 E-value=3.9e-50 Score=344.97 Aligned_cols=263 Identities=19% Similarity=0.259 Sum_probs=232.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-HHHHHHHH-c-CceeccCchhhhcCCCEEEEeeCcccHHH
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFES-I-GVKVLSDNNAVVEYSDVVVFSVKPQVDKA 86 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~-~-g~~~~~~~~~~~~~aDvI~lav~~~~~~~ 86 (276)
|+||+|||+|+||.+|+.+|.++|.+.+.+|++| +|++ ++.+.+.. . ++.++.++.++++++|+||+||||+.+.+
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~-~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~~~~~ 79 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILY-SSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPLAVLP 79 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEE-eCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHHHHHH
Confidence 4689999999999999999999984445689999 7754 55555544 3 34556677788899999999999999999
Q ss_pred HHHHHhhccccccCCcccCCCCcccHHHHHHHcCCCcEEEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCce
Q 023866 87 AVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI 166 (276)
Q Consensus 87 vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~~~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~ 166 (276)
++.++.. .+.++..+++-.+|+ +.++|+++++..+++|+|||+|+.+++|++.++++++.++++.+.++.+|+++|.+
T Consensus 80 vl~~l~~-~l~~~~~ivS~~aGi-~~~~l~~~~~~~~vvR~MPN~~~~~g~g~t~~~~~~~~~~~~~~~v~~l~~~~G~~ 157 (277)
T PRK06928 80 LLKDCAP-VLTPDRHVVSIAAGV-SLDDLLEITPGLQVSRLIPSLTSAVGVGTSLVAHAETVNEANKSRLEETLSHFSHV 157 (277)
T ss_pred HHHHHHh-hcCCCCEEEEECCCC-CHHHHHHHcCCCCEEEEeCccHHHHhhhcEEEecCCCCCHHHHHHHHHHHHhCCCE
Confidence 9988821 111113345555999 99999999986789999999999999999999988889999999999999999999
Q ss_pred EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchH
Q 023866 167 WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAA-GLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTT 245 (276)
Q Consensus 167 ~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~-Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t 245 (276)
++++|+++|.+++++||+|+|++.++++|++++++. |++++++++++.+++.|+++++.+++.+|.++++.|+||||+|
T Consensus 158 ~~v~E~~~d~~tal~gsgPA~~~~~~~al~~a~~~~ggl~~~~a~~l~~~~~~G~a~l~~~~~~~p~~l~~~v~spgGtT 237 (277)
T PRK06928 158 MTIREENMDIASNLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFLNFALAGTGKLLVEEDYTFSGTIERVATKGGIT 237 (277)
T ss_pred EEEchhhCceeeeeecCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHhCCCCChHH
Confidence 888999999999999999999999999999999999 7999999999999999999999888899999999999999999
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHhhcC
Q 023866 246 IAGIHELEKSGFRGILMNAVVAAAKRSRELS 276 (276)
Q Consensus 246 ~~~l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 276 (276)
++||+.|++ ++++.+.++++++++|+++++
T Consensus 238 ~~gl~~le~-~~~~~~~~~~~~a~~r~~~~~ 267 (277)
T PRK06928 238 AEGAEVIQA-QLPQFFDELLDRTQKKYASSK 267 (277)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 999999997 999999999999999999873
No 5
>PLN02688 pyrroline-5-carboxylate reductase
Probab=100.00 E-value=7.4e-48 Score=330.03 Aligned_cols=264 Identities=64% Similarity=0.974 Sum_probs=239.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHHHHH
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAVIT 90 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl~~ 90 (276)
|||+|||+|+||.+|+++|+++|++++.+|++|.+|++++.+.+.+.|+..+.++.+++++||+||+||||+++++++.+
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~~~~~~~vl~~ 80 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVKPQVVKDVLTE 80 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEECcHHHHHHHHH
Confidence 68999999999999999999999767778887658999999888888998888888889999999999999999999987
Q ss_pred HhhccccccCCcccCCCCcccHHHHHHHcCCCcEEEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCceEEcC
Q 023866 91 EEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRAD 170 (276)
Q Consensus 91 ~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~~~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~~~~~ 170 (276)
+.. .+.+++.+++..+|+ +.+.++++++..+++|+|||+|..++.+.+.++.+.+.+++.++.++++|+.+|.+++++
T Consensus 81 l~~-~~~~~~~iIs~~~g~-~~~~l~~~~~~~~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G~~~~~~ 158 (266)
T PLN02688 81 LRP-LLSKDKLLVSVAAGI-TLADLQEWAGGRRVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVGKIWVVD 158 (266)
T ss_pred HHh-hcCCCCEEEEecCCC-cHHHHHHHcCCCCEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhCCCEEEeC
Confidence 721 122223345555888 899999888755899999999999999999888888888999999999999999987889
Q ss_pred CCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHHH
Q 023866 171 EKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIH 250 (276)
Q Consensus 171 e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~~l~ 250 (276)
|+++|.+++++|++|+|++.+++++.+++.+.|+|++++++++.+++.|+++++.+++.+|.++++.++||||+|+++++
T Consensus 159 e~~~d~~~~~~g~g~a~~~~~~~a~~ea~~~~Gl~~~~a~~~~~~~~~gs~~l~~~~~~~~~~l~~~v~spgG~t~~~l~ 238 (266)
T PLN02688 159 EKLLDAVTGLSGSGPAYIFLAIEALADGGVAAGLPRDVALSLAAQTVLGAAKMVLETGKHPGQLKDMVTSPGGTTIAGVH 238 (266)
T ss_pred HHHcchhHhhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred HHHhCChHHHHHHHHHHHHHHHhhcC
Q 023866 251 ELEKSGFRGILMNAVVAAAKRSRELS 276 (276)
Q Consensus 251 ~l~~~~~~~~~~~a~~~~~~r~~~~~ 276 (276)
.|++.|++..+.+|++++++|++||+
T Consensus 239 ~l~~~g~~~~~~~a~~~~~~r~~~~~ 264 (266)
T PLN02688 239 ELEKGGFRAALMNAVVAAAKRSRELS 264 (266)
T ss_pred HHHHCChHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999985
No 6
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=100.00 E-value=1.1e-47 Score=330.66 Aligned_cols=266 Identities=30% Similarity=0.459 Sum_probs=237.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-HHHHHHHH-cCceeccCchhhhcCCCEEEEeeCcccHH
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVDK 85 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~~~ 85 (276)
|+.|||+|||+|+||.+|+++|+++|.+.+.+|++| +|++ ++++.+.. .|+..+.++.+++++||+||+||||+++.
T Consensus 1 ~~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~-~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~~~ 79 (279)
T PRK07679 1 MSIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVS-NRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKDVA 79 (279)
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEE-CCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHHHH
Confidence 566899999999999999999999984455699999 9976 46677766 58887888888889999999999999999
Q ss_pred HHHHHHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcC
Q 023866 86 AAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVG 164 (276)
Q Consensus 86 ~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G 164 (276)
+++.++.. .+.+++.+++..+|+ +.++++++++ +.+++|.|||+|...+.+.+.+++++..+++.++.++++|+.+|
T Consensus 80 ~vl~~l~~-~~~~~~liIs~~aGi-~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~~~~~~~~~~~~v~~l~~~~G 157 (279)
T PRK07679 80 EALIPFKE-YIHNNQLIISLLAGV-STHSIRNLLQKDVPIIRAMPNTSAAILKSATAISPSKHATAEHIQTAKALFETIG 157 (279)
T ss_pred HHHHHHHh-hcCCCCEEEEECCCC-CHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEeeCCCCCHHHHHHHHHHHHhCC
Confidence 99988731 122222344444899 9999999887 46899999999999999999998888888999999999999999
Q ss_pred ceEEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCch
Q 023866 165 KIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGT 244 (276)
Q Consensus 165 ~~~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~ 244 (276)
.+++++|+++|.+++++||+|+|++.+++++.+++++.|+|++++++++.+++.|++.++.+++.+|..+++++++|+|+
T Consensus 158 ~~~~v~e~~~~~~~a~~Gsgpa~~~~~~eal~e~~~~~Gl~~~~a~~~~~~~~~gsa~~~~~~~~~~~~l~~~v~spgg~ 237 (279)
T PRK07679 158 LVSVVEEEDMHAVTALSGSGPAYIYYVVEAMEKAAKKIGLKEDVAKSLILQTMIGAAEMLKASEKHPSILRKEITSPGGT 237 (279)
T ss_pred cEEEeCHHHhhhHHHhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCchH
Confidence 99888999999999999999999999999999999999999999999999999999999987788999999999999999
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHhhcC
Q 023866 245 TIAGIHELEKSGFRGILMNAVVAAAKRSRELS 276 (276)
Q Consensus 245 t~~~l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 276 (276)
|+++|+.|++.+|+..+.+|++++++|++||+
T Consensus 238 t~~gl~~l~~~~~~~~i~~a~~~a~~r~~~l~ 269 (279)
T PRK07679 238 TEAGIEVLQEHRFQQALISCITQATQRSHNLG 269 (279)
T ss_pred HHHHHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999985
No 7
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=100.00 E-value=2.2e-45 Score=314.91 Aligned_cols=261 Identities=44% Similarity=0.686 Sum_probs=235.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCcccHHHHH
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAV 88 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl 88 (276)
+|||+|||+|+||++++.+|.++|+ .+.+|++| +|++++.+.+.+ .|+.+..++.+++.++|+||+||||+++.+++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~-~~~~v~v~-~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~~~~~v~ 79 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGV-PAKDIIVS-DPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQVMEEVL 79 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCC-CcceEEEE-cCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHHHHHHHH
Confidence 5799999999999999999999883 33489999 999999988877 48877778888889999999999999999999
Q ss_pred HHHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCceE
Q 023866 89 ITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIW 167 (276)
Q Consensus 89 ~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~~ 167 (276)
+++... + ++.+++..+|+ +.+.++++++ +.+++|+|||+|..++.+.+.++++.+.+++.++.++.+|+.+|..+
T Consensus 80 ~~l~~~-~--~~~vvs~~~gi-~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~lG~~~ 155 (267)
T PRK11880 80 SELKGQ-L--DKLVVSIAAGV-TLARLERLLGADLPVVRAMPNTPALVGAGMTALTANALVSAEDRELVENLLSAFGKVV 155 (267)
T ss_pred HHHHhh-c--CCEEEEecCCC-CHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCCCCCHHHHHHHHHHHHhCCeEE
Confidence 988310 0 12345555899 9999999887 57899999999999999999888888889999999999999999875
Q ss_pred Ec-CCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHH
Q 023866 168 RA-DEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI 246 (276)
Q Consensus 168 ~~-~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~ 246 (276)
++ +|+++|.+++++||+|+|++.+++++.+++.+.|++++++++++.+++.|+++++.+.+.+|+++++.+++|||+|+
T Consensus 156 ~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~tpgG~t~ 235 (267)
T PRK11880 156 WVDDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAAQTVLGAAKLLLESGEHPAELRDNVTSPGGTTI 235 (267)
T ss_pred EECChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCcHHHH
Confidence 55 59999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHhhcC
Q 023866 247 AGIHELEKSGFRGILMNAVVAAAKRSRELS 276 (276)
Q Consensus 247 ~~l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 276 (276)
++++.|++.|+++.+.++++++++|+++|+
T Consensus 236 ~gl~~l~~~g~~~~~~~a~~~~~~ra~~~~ 265 (267)
T PRK11880 236 AALRVLEEKGLRAAVIEAVQAAAKRSKELG 265 (267)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999986
No 8
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-46 Score=303.50 Aligned_cols=263 Identities=51% Similarity=0.743 Sum_probs=237.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH-HHHcCceeccCchhhhcCCCEEEEeeCcccHHHHHH
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-FESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAVI 89 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~-l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl~ 89 (276)
|++||||+|+|..++++++..+|.+.+++++.+ -.+...... ++..|+..+.++.+.++.+|++|++|+|+.+.+++.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s-~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svKp~~i~~vls 79 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWAS-VQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVKPQVIESVLS 79 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeee-cCchhhhhhhhhcCCceeeechHHHHhhccceeEeecchhHHHHhh
Confidence 689999999999999999999999888999988 554444444 667899887778999999999999999999999998
Q ss_pred HHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCceEE
Q 023866 90 TEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWR 168 (276)
Q Consensus 90 ~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~~~ 168 (276)
++.. .+..++-+++..+|+ +++.+++.++ ..+++|.|||+|..+++|.+++..+.....++.+.++++|+.+|.+..
T Consensus 80 ~~~~-~~~~~~iivS~aaG~-tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~~~~~D~~l~~~ll~~vG~~~e 157 (267)
T KOG3124|consen 80 EIKP-KVSKGKIIVSVAAGK-TLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCHATNEDLELVEELLSAVGLCEE 157 (267)
T ss_pred cCcc-ccccceEEEEEeecc-cHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCCcchhhHHHHHHHHHhcCccee
Confidence 8821 011111222334999 9999999987 578999999999999999998888888899999999999999999999
Q ss_pred cCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHH
Q 023866 169 ADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG 248 (276)
Q Consensus 169 ~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~~ 248 (276)
+.|+.+|++|+++|++|+|.+..+++|.|.++++|+|++.++++..+++.|+++++.+++.||..|+|+++||+|+|+.+
T Consensus 158 vpE~~iDavTgLsGSgPAy~f~~ieaLadGgVkmGlPr~lA~~laaqtllGAakMVl~s~qHP~~Lkd~V~SPgG~TI~g 237 (267)
T KOG3124|consen 158 VPEKCIDAVTGLSGSGPAYVFVAIEALADGGVKMGLPRQLAYRLAAQTLLGAAKMVLASGQHPAQLKDDVCSPGGTTIYG 237 (267)
T ss_pred CcHHhhhHHhhccCCcHHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHHHhccCCcHHHhCCCCCCCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCChHHHHHHHHHHHHHHHhhcC
Q 023866 249 IHELEKSGFRGILMNAVVAAAKRSRELS 276 (276)
Q Consensus 249 l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 276 (276)
+..||+.+|+..+++|++++..|++||+
T Consensus 238 lh~LE~ggfRs~linaVeaa~~r~~el~ 265 (267)
T KOG3124|consen 238 LHALEKGGFRSGLINAVEAATKRARELG 265 (267)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999985
No 9
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=100.00 E-value=5.1e-45 Score=307.74 Aligned_cols=241 Identities=44% Similarity=0.654 Sum_probs=219.1
Q ss_pred hCCCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCcccHHHHHHHHhhccccccCCcccCCCCc
Q 023866 31 KSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGL 109 (276)
Q Consensus 31 ~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~ 109 (276)
+.|.+++.+|++| +|++++++.+.+ .|+....++.++++++|+||+||||+++.+++.++.. .+..++.+++..+|+
T Consensus 3 ~~~~~~~~~I~v~-~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~-~~~~~~~ivS~~agi 80 (245)
T TIGR00112 3 KAGALAAYDIIVI-NRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVKPQDLEEVLSELKS-EKGKDKLLISIAAGV 80 (245)
T ss_pred CCCCCCCCeEEEE-cCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeCHHHHHHHHHHHhh-hccCCCEEEEecCCC
Confidence 4555677899999 999999988866 6888888888889999999999999999999998831 111123455666999
Q ss_pred ccHHHHHHHcCC-CcEEEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCceEEcCCCCchhhhhhcCchHHHH
Q 023866 110 QRWSRWVEWTGH-SRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYI 188 (276)
Q Consensus 110 ~~~~~l~~~l~~-~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~~~~~e~~~~~~~a~~g~~p~~~ 188 (276)
+++.|+++++. .+++|+|||+|..+++|++.++++++.++++.+.++++|+.+|.+++++|+++|.+++++||+|+|+
T Consensus 81 -~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~~~~talsgsgPA~~ 159 (245)
T TIGR00112 81 -TLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELPEALMDAVTALSGSGPAYV 159 (245)
T ss_pred -CHHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHHcchHHhhccCcHHHH
Confidence 99999999974 6899999999999999999999998899999999999999999998888999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHHHHHHhCChHHHHHHHHHHH
Q 023866 189 FLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAA 268 (276)
Q Consensus 189 ~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~~l~~l~~~~~~~~~~~a~~~~ 268 (276)
+.++++|.+++++.|++++++++++.+++.|+++++.+++.+|+++++.++||||+|++||+.|++.+|++.+.+|++++
T Consensus 160 ~~~~~al~~~~v~~Gl~~~~A~~lv~~~~~G~a~l~~~~~~~~~~l~~~v~spgGtT~~gl~~Le~~~~~~~~~~a~~aa 239 (245)
T TIGR00112 160 FLFIEALADAGVKQGLPRELALELAAQTVKGAAKLLEESGEHPALLKDQVTSPGGTTIAGLAVLEEKGVRGAVIEAVEAA 239 (245)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHcCCCCcHHHHHHHHHHHHCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 023866 269 AKRSRE 274 (276)
Q Consensus 269 ~~r~~~ 274 (276)
++|++|
T Consensus 240 ~~r~~e 245 (245)
T TIGR00112 240 VRRSRE 245 (245)
T ss_pred HHHhcC
Confidence 999976
No 10
>PRK07680 late competence protein ComER; Validated
Probab=100.00 E-value=6.8e-44 Score=306.30 Aligned_cols=259 Identities=19% Similarity=0.326 Sum_probs=228.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-c-CceeccCchhhhcCCCEEEEeeCcccHHHHH
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I-GVKVLSDNNAVVEYSDVVVFSVKPQVDKAAV 88 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~-g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl 88 (276)
|+|+|||+|+||++|+.+|.++|++.+.+|++| +|++++.+.+.+ . |+....++.+++.++|+||+||||+++.+++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~-~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTIT-NRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPLDIYPLL 79 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEE-CCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHHHHHHHH
Confidence 589999999999999999999986566789999 999999888876 3 7777778888889999999999999999999
Q ss_pred HHHhhccccccCCcccCCCCcccHHHHHHHcCCCcEEEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCceEE
Q 023866 89 ITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWR 168 (276)
Q Consensus 89 ~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~~~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~~~ 168 (276)
+++.. .+.++..+++-.+|+ +.+.++++++ .+++|+|||++...+.|.+.++.++..+++.++.+.++|+.+|..++
T Consensus 80 ~~l~~-~l~~~~~iis~~ag~-~~~~L~~~~~-~~~~r~~p~~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll~~~G~~~~ 156 (273)
T PRK07680 80 QKLAP-HLTDEHCLVSITSPI-SVEQLETLVP-CQVARIIPSITNRALSGASLFTFGSRCSEEDQQKLERLFSNISTPLV 156 (273)
T ss_pred HHHHh-hcCCCCEEEEECCCC-CHHHHHHHcC-CCEEEECCChHHHHhhccEEEeeCCCCCHHHHHHHHHHHHcCCCEEE
Confidence 88721 111112233444888 9999999887 47999999999878889888777777788889999999999998888
Q ss_pred cCCCCchhhhhhcCchHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHH
Q 023866 169 ADEKLFDAITGLSGSGPAYIFLAIEALADGGVA-AGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIA 247 (276)
Q Consensus 169 ~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~-~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~ 247 (276)
++|+.++..++++||+|+|++.++++|.+++.+ .|++++++++++.+++.|+++++.+++.+|+++++.++||||+|++
T Consensus 157 i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~~~~~~l~~~v~spgG~T~~ 236 (273)
T PRK07680 157 IEEDITRVSSDIVSCGPAFFSYLLQRFIDAAVEETNISKEEATTLASEMLIGMGKLLEKGLYTLPTLQEKVCVKGGITGE 236 (273)
T ss_pred EChHhcchhhhhccchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCChhHHH
Confidence 899999999999999999999999999999987 8999999999999999999999988889999999999999999999
Q ss_pred HHHHHHhCChHHHHHHHHHHHHHHHhh
Q 023866 248 GIHELEKSGFRGILMNAVVAAAKRSRE 274 (276)
Q Consensus 248 ~l~~l~~~~~~~~~~~a~~~~~~r~~~ 274 (276)
|++.|++ ++++.+.++++++.+|..+
T Consensus 237 gl~~le~-~~~~~~~~~~~~~~~~~~~ 262 (273)
T PRK07680 237 GIKVLEE-EVGDMFHRLFQRTHEKFDE 262 (273)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999 7999999999999999654
No 11
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=100.00 E-value=1.9e-42 Score=295.07 Aligned_cols=250 Identities=22% Similarity=0.307 Sum_probs=219.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-c-CceeccCchhhhcCCCEEEEeeCcccHHHHH
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I-GVKVLSDNNAVVEYSDVVVFSVKPQVDKAAV 88 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~-g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl 88 (276)
|||||||+|+||++|+++|.++|+ ...++.+| +|++++.+.+.+ . ++..+.++.++++++|+||+||||+++.+++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~-~~~~i~v~-~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p~~~~~vl 78 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPA-DVSEIIVS-PRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRPQIAEEVL 78 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCC-ChheEEEE-CCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCHHHHHHHH
Confidence 589999999999999999999886 44567899 999999988877 3 5777778888889999999999999999999
Q ss_pred HHHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCce-
Q 023866 89 ITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI- 166 (276)
Q Consensus 89 ~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~- 166 (276)
.++ .+.+++.+++..+|+ +.+.++++++ ..+++|.|||+|...+.|.+.++++ .+.++++|+.+|..
T Consensus 79 ~~l---~~~~~~~vis~~ag~-~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~-------~~~~~~l~~~lG~~~ 147 (258)
T PRK06476 79 RAL---RFRPGQTVISVIAAT-DRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPP-------DPFVAALFDALGTAV 147 (258)
T ss_pred HHh---ccCCCCEEEEECCCC-CHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCC-------HHHHHHHHHhcCCcE
Confidence 877 233334455655888 9999999987 3689999999999999998887653 25889999999987
Q ss_pred EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH-HHhcCCChHHHHHhcCCCCchH
Q 023866 167 WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASM-VTKSGKHPGQLKDDVASPGGTT 245 (276)
Q Consensus 167 ~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~-~~~~~~~~~~l~~~v~sp~g~t 245 (276)
+..+|+++|.+++++ ++|+|++.+++++.+++++.|+|++++++++.+++.|++++ +.+++.+|++|++.|+||||+|
T Consensus 148 ~~~~e~~~d~~~a~~-s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~~~~~~~l~~~v~spgGtT 226 (258)
T PRK06476 148 ECDSEEEYDLLAAAS-ALMATYFGILETATGWLEEQGLKRQKARAYLAPLFASLAQDAVRSTKTDFSALSREFSTKGGLN 226 (258)
T ss_pred EECChHhccceeehh-ccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhCCCCCchH
Confidence 555688999999986 58999999999999999999999999999999999999999 5777789999999999999999
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHhh
Q 023866 246 IAGIHELEKSGFRGILMNAVVAAAKRSRE 274 (276)
Q Consensus 246 ~~~l~~l~~~~~~~~~~~a~~~~~~r~~~ 274 (276)
++||+.|++.|++.++.++++++++|++-
T Consensus 227 ~~gl~~le~~~~~~~~~~a~~aa~~r~~~ 255 (258)
T PRK06476 227 EQVLNDFSRQGGYAALTDALDRVLRRING 255 (258)
T ss_pred HHHHHHHHHCChHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999863
No 12
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=100.00 E-value=1.6e-41 Score=287.50 Aligned_cols=242 Identities=24% Similarity=0.402 Sum_probs=211.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCC-CHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCcccH
Q 023866 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVD 84 (276)
Q Consensus 7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r-~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~~ 84 (276)
+|+.+||+|||+|+||.+++.+|.+.|+....+++++ +| ++++.+.+.+ .++..+.++.++++++|+||+||||+.+
T Consensus 1 ~m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~~~ 79 (245)
T PRK07634 1 MLKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVS-NRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPSAH 79 (245)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEE-CCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHHHH
Confidence 3567899999999999999999998874333457788 77 5788888776 6877777888888999999999999999
Q ss_pred HHHHHHHhhccccccCCcccCCCCcccHHHHHHHcCC-CcEEEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhc
Q 023866 85 KAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGH-SRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSV 163 (276)
Q Consensus 85 ~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~~-~~vv~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~ 163 (276)
++++.++.. ..+++.+++..+|+ +.+.|+++++. .+++|+|||++..++.|.+.++...+.+++..+.++++|+.+
T Consensus 80 ~~v~~~l~~--~~~~~~vis~~~gi-~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~~~~~~~~~~~~v~~lf~~~ 156 (245)
T PRK07634 80 EELLAELSP--LLSNQLVVTVAAGI-GPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTMGQSVNETHKETLQLILKGI 156 (245)
T ss_pred HHHHHHHHh--hccCCEEEEECCCC-CHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEeeCCCCCHHHHHHHHHHHHhC
Confidence 999988721 11113344555899 99999999974 589999999999999999888888888999999999999999
Q ss_pred CceEEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCc
Q 023866 164 GKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGG 243 (276)
Q Consensus 164 G~~~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g 243 (276)
|.++++.|++++.+++++||+|+|++.+++++.+++++.|+|++++++++.+++.|+++++.+ +.+|++|++.++||||
T Consensus 157 G~~~~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~-~~~~~~l~~~v~spgG 235 (245)
T PRK07634 157 GTSQLCTEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMISGSASMLEQ-TQDPANLREQVTTPGG 235 (245)
T ss_pred CCEEEECHHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHhCCCCCh
Confidence 998778899999999999999999999999999999999999999999999999999999875 5799999999999999
Q ss_pred hHHHHHHHHH
Q 023866 244 TTIAGIHELE 253 (276)
Q Consensus 244 ~t~~~l~~l~ 253 (276)
+|++||+.|+
T Consensus 236 ~T~~gl~~l~ 245 (245)
T PRK07634 236 STAEGLKALY 245 (245)
T ss_pred HHHHHHHHhC
Confidence 9999999884
No 13
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=100.00 E-value=2.9e-32 Score=236.29 Aligned_cols=219 Identities=16% Similarity=0.156 Sum_probs=182.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHHH
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKAA 87 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~v 87 (276)
+.+||+|||+|+||.+++.+|+++|+ +|++++++++++.+.+.+.|+... ++.+++++||+||++|||+ +...+
T Consensus 2 ~~kkIgiIG~G~mG~AiA~~L~~sG~----~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v 76 (314)
T TIGR00465 2 KGKTVAIIGYGSQGHAQALNLRDSGL----NVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQHEVY 76 (314)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCCC----eEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhHHHHH
Confidence 45899999999999999999999998 787652555566677777788764 5778889999999999999 66666
Q ss_pred HHHHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCcccc-c------cCcceEee-cCCCCCHHHHHHHHH
Q 023866 88 VITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSA-V------GEAATVMS-LGGTATEEDGELIGK 158 (276)
Q Consensus 88 l~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~-~------~~g~~~i~-~~~~~~~~~~~~v~~ 158 (276)
+.++.. .+++ ..+++-.+|+ +++.++..+| +.+++|+|||+|.. + |.|++.++ .++..+.++.+.+..
T Consensus 77 ~~ei~~-~l~~-g~iVs~aaG~-~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~ 153 (314)
T TIGR00465 77 EAEIQP-LLKE-GKTLGFSHGF-NIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALA 153 (314)
T ss_pred HHHHHh-hCCC-CcEEEEeCCc-cHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHH
Confidence 666621 1111 1234444899 9999998887 46899999999998 5 99998885 777788999999999
Q ss_pred HhhhcCce-------E---EcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 023866 159 LFGSVGKI-------W---RADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSG 228 (276)
Q Consensus 159 ll~~~G~~-------~---~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~ 228 (276)
+|+.+|.. . ++.|+++|..++++||+|+|++.++++| ++.|++++.|+.++.+++.|+++++.+++
T Consensus 154 ~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~eal----v~~G~~~e~A~~~~~~~~~g~~~l~~e~g 229 (314)
T TIGR00465 154 YAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTL----VEAGYQPELAYFETVHELKLIVDLIYEGG 229 (314)
T ss_pred HHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHH----HHcCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999977 4 6778999999999999999999888777 68999999999999999999999998876
Q ss_pred CChHHHHHhcCCC
Q 023866 229 KHPGQLKDDVASP 241 (276)
Q Consensus 229 ~~~~~l~~~v~sp 241 (276)
. ..+++.+++.
T Consensus 230 ~--~~l~~~Vsst 240 (314)
T TIGR00465 230 I--TGMRDRISNT 240 (314)
T ss_pred H--HHHHHHcCCH
Confidence 5 6899999864
No 14
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.96 E-value=1e-27 Score=232.04 Aligned_cols=249 Identities=15% Similarity=0.158 Sum_probs=194.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce--eccCchhhhcCCCEEEEeeCcccHHHHH
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK--VLSDNNAVVEYSDVVVFSVKPQVDKAAV 88 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~--~~~~~~~~~~~aDvI~lav~~~~~~~vl 88 (276)
.||+|||+|+||.+++++|.+.|+ ..+|++| ||++++.+.+.+.|+. ...+..++++++|+||+|||++.+.+++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~--~~~V~~~-d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl 80 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGL--AREVVAV-DRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVLAMEKVL 80 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCC--CCEEEEE-ECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHHHHHHHH
Confidence 689999999999999999999884 2279999 9999998888777764 3445667788999999999999999999
Q ss_pred HHHhhccccccCCcccCCCCccc---HHHHHHHcCCCcEEEEecCccccccC--------------cceEeecCCCCCHH
Q 023866 89 ITEEAFGFCCCRSEIERPSGLQR---WSRWVEWTGHSRFIRVMPNTPSAVGE--------------AATVMSLGGTATEE 151 (276)
Q Consensus 89 ~~~~~~~~~~~~~~l~~~~g~~~---~~~l~~~l~~~~vv~~~p~~~~~~~~--------------g~~~i~~~~~~~~~ 151 (276)
.++.. -+. ...++...+++ + .+.+++.++. ..+|+|||+|..... +.+.+++..+.+++
T Consensus 81 ~~l~~-~~~-~~~ii~d~~sv-k~~~~~~l~~~~~~-~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~ 156 (735)
T PRK14806 81 ADLKP-LLS-EHAIVTDVGST-KGNVVDAARAVFGE-LPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPA 156 (735)
T ss_pred HHHHH-hcC-CCcEEEEcCCC-chHHHHHHHHhccc-cCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHH
Confidence 88821 010 01233333555 4 5667777654 367899999975221 23456777777889
Q ss_pred HHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 023866 152 DGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPA-YIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGK 229 (276)
Q Consensus 152 ~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~-~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~ 229 (276)
..+.+.++|+.+|.. +++++++||.++|++||+|| |.+.+++++.+ .|.. ..+.++..++|+++++++. .
T Consensus 157 ~~~~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~ph~~~~~l~~~l~~----~~~~-~~~~~~a~~~f~~~tRia~---~ 228 (735)
T PRK14806 157 ALARVDRLWRAVGADVLHMDVAHHDEVLAATSHLPHLLAFSLVDQLAN----REDN-LDIFRYAAGGFRDFTRIAA---S 228 (735)
T ss_pred HHHHHHHHHHHcCCEEEEcCHHHHhHHHHHhcchHHHHHHHHHHHHhh----cCCh-hHHHhhhccchhccccccc---C
Confidence 999999999999975 78999999999999999999 55666666544 4432 3578999999999999984 6
Q ss_pred ChHHHHHhcCCCCchHHHHHHHHHh--CChHHHHH----HHHHHHHHHHhh
Q 023866 230 HPGQLKDDVASPGGTTIAGIHELEK--SGFRGILM----NAVVAAAKRSRE 274 (276)
Q Consensus 230 ~~~~l~~~v~sp~g~t~~~l~~l~~--~~~~~~~~----~a~~~~~~r~~~ 274 (276)
+|++|.+.+++|++++.++|+.|++ .+++..+. +.+.+.++++++
T Consensus 229 ~p~~~~di~~~n~~~~~~~l~~~~~~l~~~~~~l~~~d~~~~~~~~~~~~~ 279 (735)
T PRK14806 229 DPVMWHDIFLANKEAVLRALDHFRDDLDALRAAIEAGDGHALLGVFTRARA 279 (735)
T ss_pred CHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999999999988 58888887 467777766654
No 15
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.95 E-value=2.9e-27 Score=210.35 Aligned_cols=248 Identities=15% Similarity=0.167 Sum_probs=185.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce----eccCchhhhcCCCEEEEeeCcccHHH
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK----VLSDNNAVVEYSDVVVFSVKPQVDKA 86 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~----~~~~~~~~~~~aDvI~lav~~~~~~~ 86 (276)
++|+|||+|.||++|+.+|.++|+ ++.+| ++++++.+.....+.. ..++..+++++||+||+|||++.+.+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~----~v~i~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~~~~ 75 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGP----DVFII-GYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDATAA 75 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCC----CeEEE-EeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHHHHH
Confidence 479999999999999999999998 88888 7776655444443332 23455677899999999999999999
Q ss_pred HHHHHhhccccccCCcccCCCCcccH---HHHHHHcC-CCcEEEEecCccc-----------cccCcceEeecCCCCCHH
Q 023866 87 AVITEEAFGFCCCRSEIERPSGLQRW---SRWVEWTG-HSRFIRVMPNTPS-----------AVGEAATVMSLGGTATEE 151 (276)
Q Consensus 87 vl~~~~~~~~~~~~~~l~~~~g~~~~---~~l~~~l~-~~~vv~~~p~~~~-----------~~~~g~~~i~~~~~~~~~ 151 (276)
++.++....+++ ..++...+++ +. +.+++.++ ..+++..||.... .+....+++++.+..+++
T Consensus 76 vl~~l~~~~l~~-~~ivtDv~Sv-K~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~ 153 (359)
T PRK06545 76 LLAELADLELKP-GVIVTDVGSV-KGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPD 153 (359)
T ss_pred HHHHHhhcCCCC-CcEEEeCccc-cHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHH
Confidence 998882101111 1233332444 43 34455444 3567777775332 122334677877778899
Q ss_pred HHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q 023866 152 DGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKH 230 (276)
Q Consensus 152 ~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~ 230 (276)
.++.++++|+.+|.. +++++++||.++|+++|+|+|++. +| +...+.+.+.+.+++.++|+++++++. .+
T Consensus 154 ~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~---al---~~~~~~~~~~~~~la~~gfrd~tRia~---~~ 224 (359)
T PRK06545 154 AVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILAS---SL---AARLAGEHPLALRLAAGGFRDITRIAS---SD 224 (359)
T ss_pred HHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHH---HH---HHhhccCchHHHhhhcccccCCccccC---CC
Confidence 999999999999976 689999999999999999999875 33 344566778889999999999999984 69
Q ss_pred hHHHHHhcCCCCchHHHHHHHHHhC--ChHHHHH----HHHHHHHHHHhh
Q 023866 231 PGQLKDDVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE 274 (276)
Q Consensus 231 ~~~l~~~v~sp~g~t~~~l~~l~~~--~~~~~~~----~a~~~~~~r~~~ 274 (276)
|.+|.+.+++|++.+.+.|+.+++. .++..+. +.+.+.++++++
T Consensus 225 p~~w~di~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~ 274 (359)
T PRK06545 225 PGMWRDILESNAEALLDALDEWIEDLDRARDALESGDAEAIAELFDAGKA 274 (359)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999988764 5666664 357777777654
No 16
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.95 E-value=3.2e-26 Score=197.18 Aligned_cols=250 Identities=14% Similarity=0.148 Sum_probs=181.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce-eccCchhhhcCCCEEEEeeCcccHHHHHH
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK-VLSDNNAVVEYSDVVVFSVKPQVDKAAVI 89 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~aDvI~lav~~~~~~~vl~ 89 (276)
|||+|||+|.||++|+..|.++|+ +|++| +|++++.+.+.+.|.. ...+..+.+++||+||+|+|++.+.+++.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~----~V~~~-d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~~~~~~ 75 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGH----TVYGV-SRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLLPPSE 75 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHHHHHHH
Confidence 589999999999999999999998 99999 9999999888887753 23334456789999999999999988888
Q ss_pred HHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCcccc-----------ccCcceEeecCCCCCHHHHHHHH
Q 023866 90 TEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSA-----------VGEAATVMSLGGTATEEDGELIG 157 (276)
Q Consensus 90 ~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~-----------~~~g~~~i~~~~~~~~~~~~~v~ 157 (276)
++.. -+. +..++...+++ +...++.... ..++++.||..... +......+++.+..+++.++.++
T Consensus 76 ~l~~-~l~-~~~ii~d~~Sv-k~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~ 152 (279)
T PRK07417 76 QLIP-ALP-PEAIVTDVGSV-KAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVE 152 (279)
T ss_pred HHHH-hCC-CCcEEEeCcch-HHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHH
Confidence 8721 011 01223332555 5555554433 23688888854322 11223456677777889999999
Q ss_pred HHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHH-cCCCH-HHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 023866 158 KLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVA-AGLPR-ELALGLASQTVLGAASMVTKSGKHPGQL 234 (276)
Q Consensus 158 ~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~-~Gl~~-~~a~~~~~~~~~g~~~~~~~~~~~~~~l 234 (276)
++++.+|.. +++++++||..+++++++|+|++. +++..... ..-+. +.+..+..++|+++++++. .+|++|
T Consensus 153 ~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~---~l~~~~~~~~~~~~~~~~~~~~~~gfrd~tRia~---~~p~~w 226 (279)
T PRK07417 153 ELAVSLGSKIYTADPEEHDRAVALISHLPVMVSA---ALIQTCGTEKDPSVLKLAQNLASSGFADTSRVGG---GNPELG 226 (279)
T ss_pred HHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHHH---HHHHHHhhcccchhhHHhhhhccCcccccccccC---CChHHH
Confidence 999999976 789999999999999999998764 33333221 11111 2235789999999999874 689999
Q ss_pred HHhcCCCCchHHHHHHHHHhC--ChHHHHH----HHHHHHHHHHhh
Q 023866 235 KDDVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE 274 (276)
Q Consensus 235 ~~~v~sp~g~t~~~l~~l~~~--~~~~~~~----~a~~~~~~r~~~ 274 (276)
.+.+.++.....+.|+.+++. .++..|. +++.+.++++++
T Consensus 227 ~~i~~~N~~~i~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~ 272 (279)
T PRK07417 227 VMMAEYNRAALLRSLASYRQSLDQLEELIEQENWSALEQKLEQTQE 272 (279)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999998888777888877664 5555554 466677776664
No 17
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.94 E-value=1.6e-25 Score=192.61 Aligned_cols=248 Identities=17% Similarity=0.180 Sum_probs=181.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce-eccCchhhhcCCCEEEEeeCcccHHHHHH
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK-VLSDNNAVVEYSDVVVFSVKPQVDKAAVI 89 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~aDvI~lav~~~~~~~vl~ 89 (276)
|||+|||+|+||++|+.+|.++|+ ..+|++| ||++++.+.+.+.|+. ...+..++. ++|+||+|||++.+.+++.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~--~~~v~~~-d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~~~~~~~ 76 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGL--ISKVYGY-DHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDAIIEILP 76 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCC--CCEEEEE-cCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHHHHHHHH
Confidence 589999999999999999999985 3368888 9999998888777764 344556654 5999999999999999998
Q ss_pred HHhhccccccCCcccCCCCcccHHHHHHHcC---CCcEEEEecCccc------c----ccCc-ceEeecCCCCCHHHHHH
Q 023866 90 TEEAFGFCCCRSEIERPSGLQRWSRWVEWTG---HSRFIRVMPNTPS------A----VGEA-ATVMSLGGTATEEDGEL 155 (276)
Q Consensus 90 ~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~---~~~vv~~~p~~~~------~----~~~g-~~~i~~~~~~~~~~~~~ 155 (276)
++.. +.++. ++.. .|. +...+.+.+. ..++++.||+... . ..+| .+++++.++.+++.++.
T Consensus 77 ~l~~--l~~~~-iv~d-~gs-~k~~i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~ 151 (275)
T PRK08507 77 KLLD--IKENT-TIID-LGS-TKAKIIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQER 151 (275)
T ss_pred HHhc--cCCCC-EEEE-Ccc-chHHHHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHH
Confidence 8821 11111 1211 444 3333433332 2478999998532 1 1134 34566666677889999
Q ss_pred HHHHhhhcCc-eEEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 023866 156 IGKLFGSVGK-IWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQL 234 (276)
Q Consensus 156 v~~ll~~~G~-~~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l 234 (276)
+.++|+.+|. ++++++++||..++++++.|++++. ++.+... .+.+.+...++..++|++++++.. .+|++|
T Consensus 152 v~~l~~~~G~~~~~~~~~~hD~~~a~vs~lph~~a~---~l~~~~~-~~~~~~~~~~~~~~gfrd~tria~---~~p~l~ 224 (275)
T PRK08507 152 AKEIFSGLGMRIVYMDAKEHDLHAAYISHLPHIISF---ALANTVL-KEEDERNIFDLAGGGFRSMSRLAK---SSPAMW 224 (275)
T ss_pred HHHHHHHhCCEEEEeCHHHHHHHHHHHhHHHHHHHH---HHHHHHH-hcCChHHHHhhcccchhhhhhccc---CCHHHH
Confidence 9999999995 4889999999999999999986543 4555443 466677778999999999999875 689999
Q ss_pred HHhcCCCCchHHHHHHHHHhC--ChHHHHH----HHHHHHHHHHhh
Q 023866 235 KDDVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE 274 (276)
Q Consensus 235 ~~~v~sp~g~t~~~l~~l~~~--~~~~~~~----~a~~~~~~r~~~ 274 (276)
.+.+.++.....+.|+.+.+. .+...+. +.+.+.++++++
T Consensus 225 ~~i~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~~~~~~~~~~~ 270 (275)
T PRK08507 225 SDIFKQNKENVLEAIDEFIKELEQFKQLIENEDWEELEEWMEQANK 270 (275)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999998888887887777664 4555553 456666666654
No 18
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=99.93 E-value=2.7e-25 Score=163.06 Aligned_cols=107 Identities=58% Similarity=0.907 Sum_probs=100.1
Q ss_pred cCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHH
Q 023866 169 ADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG 248 (276)
Q Consensus 169 ~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~~ 248 (276)
++|+++|.+++++||+|+|++.++++|++++++.|++++++++++.+++.|+++++.+++.+|.++++.++||||+|+++
T Consensus 1 V~E~~~d~~talsGsgpA~~~~~~eal~~a~v~~Gl~~~~A~~lv~~t~~G~a~ll~~~~~~~~~l~~~v~tPgG~T~~g 80 (107)
T PF14748_consen 1 VDEDQFDAATALSGSGPAYFFLFIEALADAAVAQGLPREEARKLVAQTFIGAAKLLEESGRSPAELRDEVTTPGGTTIAG 80 (107)
T ss_dssp -SGGGHHHHHHHCTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHCSS-HHHHHHHHS-TTSHHHHH
T ss_pred CCHHHHhHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHccCCCHHHHhhhccCCCCcHHHH
Confidence 47899999999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred HHHHHhCChHHHHHHHHHHHHHHHhhc
Q 023866 249 IHELEKSGFRGILMNAVVAAAKRSREL 275 (276)
Q Consensus 249 l~~l~~~~~~~~~~~a~~~~~~r~~~~ 275 (276)
|+.|++++++..|.++++++++|++||
T Consensus 81 l~~L~~~~~~~~~~~a~~aa~~R~~el 107 (107)
T PF14748_consen 81 LEVLEKGGLRAAIMEALEAAVERAKEL 107 (107)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999987
No 19
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.93 E-value=3.1e-24 Score=181.74 Aligned_cols=248 Identities=19% Similarity=0.196 Sum_probs=175.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHH-HHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHHHH
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKAAV 88 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~vl 88 (276)
+||+|||+|.||.+||.+|+++|| ++++| ||++++ .+.+++.|...+.++.++++.+|+||+||++. ++++|+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~----~v~v~-~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~ 75 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGH----EVTVY-NRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVL 75 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCC----EEEEE-eCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHH
Confidence 589999999999999999999999 99999 999999 66677789999999999999999999999755 789998
Q ss_pred HHHh--hccccccCCcccCCCCcccHH---HHHHHcC--CCcEEEEecCc--cccccCc-ceEeecCCCCCHHHHHHHHH
Q 023866 89 ITEE--AFGFCCCRSEIERPSGLQRWS---RWVEWTG--HSRFIRVMPNT--PSAVGEA-ATVMSLGGTATEEDGELIGK 158 (276)
Q Consensus 89 ~~~~--~~~~~~~~~~l~~~~g~~~~~---~l~~~l~--~~~vv~~~p~~--~~~~~~g-~~~i~~~~~~~~~~~~~v~~ 158 (276)
..-. ..+.+++.-++.. +++ +++ ++.+.+. +..++.+ |-. +.....| .++++.+ +++.++++++
T Consensus 76 ~g~~g~~~~~~~G~i~IDm-STi-sp~~a~~~a~~~~~~G~~~lDA-PVsGg~~~A~~GtLtimvGG---~~~~f~r~~p 149 (286)
T COG2084 76 FGENGLLEGLKPGAIVIDM-STI-SPETARELAAALAAKGLEFLDA-PVSGGVPGAAAGTLTIMVGG---DAEAFERAKP 149 (286)
T ss_pred hCccchhhcCCCCCEEEEC-CCC-CHHHHHHHHHHHHhcCCcEEec-CccCCchhhhhCceEEEeCC---CHHHHHHHHH
Confidence 6420 0111121222222 555 543 3433332 2334432 111 1111223 4556654 8999999999
Q ss_pred HhhhcCc-eEEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 023866 159 LFGSVGK-IWRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQL 234 (276)
Q Consensus 159 ll~~~G~-~~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l 234 (276)
+|+.+|+ .+++++.---..+.++ .+.++...+.++.|+ +.+.|+|++..++++..+..+++.+.. ..+. +
T Consensus 150 vl~~~g~~i~~~G~~G~G~~~Kl~--nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~---~~~~-m 223 (286)
T COG2084 150 VLEAMGKNIVHVGPVGAGQAAKLA--NNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILEN---YGPR-M 223 (286)
T ss_pred HHHHhcCceEEECCCCchHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHh---hcch-h
Confidence 9999997 5999996444444443 234556667777777 469999999999999999877776643 2334 4
Q ss_pred HHhcCCCCchHHHHHHHHH-------hCChHHHHHHHHHHHHHHHhhc
Q 023866 235 KDDVASPGGTTIAGIHELE-------KSGFRGILMNAVVAAAKRSREL 275 (276)
Q Consensus 235 ~~~v~sp~g~t~~~l~~l~-------~~~~~~~~~~a~~~~~~r~~~~ 275 (276)
.+.-++|++.....+++|. +.++.-.+...+.+.|+.....
T Consensus 224 ~~~~~~p~F~v~~~~KDl~la~~~A~~~g~~lP~~~~~~~ly~~~~~~ 271 (286)
T COG2084 224 LEGDFSPGFAVDLMLKDLGLALDAAKELGAPLPLTALAAELYAKAAAA 271 (286)
T ss_pred hcCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhc
Confidence 4554699999999888763 3477777778888888776543
No 20
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.93 E-value=3.3e-24 Score=194.73 Aligned_cols=243 Identities=13% Similarity=0.177 Sum_probs=185.3
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH-HcCceeccCchhhhcCCCEEEEeeCcccHHHHH
Q 023866 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE-SIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAV 88 (276)
Q Consensus 11 ~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~-~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl 88 (276)
|||+||| +|.||.+++..|.++|+ +|++| +|++++.+.+. +.|+....+..+++.++|+||+|+|++.+.+++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~----~V~v~-~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl 75 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF----EVIVT-GRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINVTEDVI 75 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC----EEEEE-ECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHHHHHHH
Confidence 6899997 89999999999999998 99999 99988865444 468877677778889999999999999999999
Q ss_pred HHHhhccccccCCcccCC------CCc--ccHHHHHHHcC-CCcEEEEecCc----cccccCcceEeecCCCCCHHHHHH
Q 023866 89 ITEEAFGFCCCRSEIERP------SGL--QRWSRWVEWTG-HSRFIRVMPNT----PSAVGEAATVMSLGGTATEEDGEL 155 (276)
Q Consensus 89 ~~~~~~~~~~~~~~l~~~------~g~--~~~~~l~~~l~-~~~vv~~~p~~----~~~~~~g~~~i~~~~~~~~~~~~~ 155 (276)
.++ .+.+.++ +++ ...+.+++.++ +.+++++||.. |...++ ...++++++.+++..+.
T Consensus 76 ~~l--------~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~-~~il~p~~~~~~~~~~~ 146 (437)
T PRK08655 76 KEV--------APHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQ-VVILTPTEKRSNPWFDK 146 (437)
T ss_pred HHH--------HhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCC-EEEEecCCCCCHHHHHH
Confidence 888 3333332 222 03466777776 46789998652 322233 34466666678889999
Q ss_pred HHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH----HHHHHhcCCC
Q 023866 156 IGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGA----ASMVTKSGKH 230 (276)
Q Consensus 156 v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~----~~~~~~~~~~ 230 (276)
+.++|+.+|.. +++++++||.+++.+++.|++++. +++.+..+.|++.+++.++..++|+.. ++++ +.+
T Consensus 147 v~~ll~~~G~~v~~~~~e~HD~~~a~vs~lph~~a~---al~~~l~~~g~~~~~~~~~a~~~frd~~~~~tRIa---~~~ 220 (437)
T PRK08655 147 VKNFLEKEGARVIVTSPEEHDRIMSVVQGLTHFAYI---SIASTLKRLGVDIKESRKFASPIYELMIDIIGRIL---GQN 220 (437)
T ss_pred HHHHHHHcCCEEEECCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHcCCCHHHHHhhcChhhHHHHHHHHHHh---cCC
Confidence 99999999965 779999999999999999998655 466666788999999999999999986 5554 368
Q ss_pred hHHHHHhcCCCCchHHHHHHHHHhC--ChHHHHH----HHHHHHHHHHhh
Q 023866 231 PGQLKDDVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE 274 (276)
Q Consensus 231 ~~~l~~~v~sp~g~t~~~l~~l~~~--~~~~~~~----~a~~~~~~r~~~ 274 (276)
|.+|.+...++. ...+.++.+.+. .++..+. +.+.+.++++++
T Consensus 221 p~lw~dI~~~N~-~~~~~l~~~~~~l~~l~~~l~~~D~~~l~~~~~~a~~ 269 (437)
T PRK08655 221 PYLYASIQMNNP-QIPEIHETFIKECEELSELVKNGDREEFVERMKEAAK 269 (437)
T ss_pred HHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999988876 577777776553 4555554 455555655543
No 21
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.92 E-value=7.3e-24 Score=185.08 Aligned_cols=254 Identities=13% Similarity=0.182 Sum_probs=176.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCc--eeccCchhhhcCCCEEEEeeCcccHHHH
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV--KVLSDNNAVVEYSDVVVFSVKPQVDKAA 87 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~--~~~~~~~~~~~~aDvI~lav~~~~~~~v 87 (276)
.+||+|||+|.||.+++..|.+.|+ ..+|++| +|++++.+.+.+.|+ ....+..+++++||+||+|+|++...++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~--~~~V~~~-dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~~~~v 82 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGL--AGEIVGA-DRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGASGAV 82 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCC--CcEEEEE-ECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHHHHHH
Confidence 4799999999999999999999884 2379999 999999888877775 2445666778999999999999988888
Q ss_pred HHHHhhccccccCCcccCCCCcccHHH---HHHHcCC-CcEEEEecCccccc-c----------CcceEeecCCCCCHHH
Q 023866 88 VITEEAFGFCCCRSEIERPSGLQRWSR---WVEWTGH-SRFIRVMPNTPSAV-G----------EAATVMSLGGTATEED 152 (276)
Q Consensus 88 l~~~~~~~~~~~~~~l~~~~g~~~~~~---l~~~l~~-~~vv~~~p~~~~~~-~----------~g~~~i~~~~~~~~~~ 152 (276)
+.++.. .+++ ..++...+++ +... +.+.++. .+++..||...... | .....+++..+.+++.
T Consensus 83 ~~~l~~-~l~~-~~iv~dvgs~-k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~ 159 (307)
T PRK07502 83 AAEIAP-HLKP-GAIVTDVGSV-KASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAA 159 (307)
T ss_pred HHHHHh-hCCC-CCEEEeCccc-hHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHH
Confidence 887720 0111 1122222344 4333 3334432 23444444432111 1 1123455555667889
Q ss_pred HHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 023866 153 GELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHP 231 (276)
Q Consensus 153 ~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~ 231 (276)
++.+.++|+.+|.. +++++++||.++|+++++|++++..+...... ....+.+....+..++|+++.++.. .+|
T Consensus 160 ~~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph~~a~~l~~~~~~--~~~~~~~~~~~~~~~gfrd~tRia~---~~~ 234 (307)
T PRK07502 160 VARLTAFWRALGARVEEMDPEHHDLVLAITSHLPHLIAYTIVGTADD--LERVTESEVIKYSASGFRDFTRIAA---SDP 234 (307)
T ss_pred HHHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHHHHHHHHHHHHhh--hcccchHHHHHhccccccccccccc---CCh
Confidence 99999999999976 78899999999999999999987654322211 1233344456788999999888764 689
Q ss_pred HHHHHhcCCCCchHHHHHHHHHhC--ChHHHHH----HHHHHHHHHHhh
Q 023866 232 GQLKDDVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE 274 (276)
Q Consensus 232 ~~l~~~v~sp~g~t~~~l~~l~~~--~~~~~~~----~a~~~~~~r~~~ 274 (276)
++|.+.+.++.....+.|+.+++. .++..|. +.+.+.++++++
T Consensus 235 ~~w~~i~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~ 283 (307)
T PRK07502 235 TMWRDVFLHNKDAVLEMLGRFTEDLAALQRAIRWGDGDALFDLFTRTRA 283 (307)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999988888877888887664 5565554 456666666554
No 22
>PLN02256 arogenate dehydrogenase
Probab=99.92 E-value=3.5e-23 Score=179.26 Aligned_cols=246 Identities=13% Similarity=0.083 Sum_probs=178.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhh-cCCCEEEEeeCcccHHH
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVV-EYSDVVVFSVKPQVDKA 86 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~aDvI~lav~~~~~~~ 86 (276)
+..++|+|||+|.||++++.+|.+.|+ +|++| ++++.. +...+.|+....+..+++ .++|+||+|||++.+.+
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~----~V~~~-d~~~~~-~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~~~~~ 107 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGH----TVLAT-SRSDYS-DIAAELGVSFFRDPDDFCEEHPDVVLLCTSILSTEA 107 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCC----EEEEE-ECccHH-HHHHHcCCeeeCCHHHHhhCCCCEEEEecCHHHHHH
Confidence 467899999999999999999999998 99999 888643 444457877666677765 47999999999999999
Q ss_pred HHHHHhhccccccCCcccCCC--CcccHHHHHHHcC-CCcEEEEecCccccccCc----ceEeecC-----CCCCHHHHH
Q 023866 87 AVITEEAFGFCCCRSEIERPS--GLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEA----ATVMSLG-----GTATEEDGE 154 (276)
Q Consensus 87 vl~~~~~~~~~~~~~~l~~~~--g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g----~~~i~~~-----~~~~~~~~~ 154 (276)
++.++....+.++.-+++-.+ |. ..+.+++.++ +.+++++||+.+.+.+.+ ...+... +..+++..+
T Consensus 108 vl~~l~~~~l~~~~iviDv~SvK~~-~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 186 (304)
T PLN02256 108 VLRSLPLQRLKRSTLFVDVLSVKEF-PKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCE 186 (304)
T ss_pred HHHhhhhhccCCCCEEEecCCchHH-HHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHH
Confidence 998872111111111222222 44 5677888776 467999999988775432 2222211 345678899
Q ss_pred HHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-cCCChH
Q 023866 155 LIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTK-SGKHPG 232 (276)
Q Consensus 155 ~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~-~~~~~~ 232 (276)
.+.++|+.+|.. +.+++++||.++|.+++.|+.++. +|.+. ..+ ...+..++|+...+++.+ ...+|.
T Consensus 187 ~l~~l~~~lGa~v~~~~~eeHD~~vA~iShLpH~la~---~L~~~----~~~---~~~~~~~gfrd~tria~r~~~~~p~ 256 (304)
T PLN02256 187 RFLDIFEEEGCRMVEMSCEEHDRYAAGSQFITHTVGR---ILGKM----ELE---STPINTKGYETLLRLVENTSSDSFD 256 (304)
T ss_pred HHHHHHHHCCCEEEEeCHHHHhHHHHhhhhHHHHHHH---HHHHc----CCc---ccccccccHHHHHHHHHhhcCCCHH
Confidence 999999999965 889999999999999999997654 33332 221 147788889999888742 236899
Q ss_pred HHHHhcCCCCchHHHHHHHHHhC--ChHHHHHHHHHHHHHH
Q 023866 233 QLKDDVASPGGTTIAGIHELEKS--GFRGILMNAVVAAAKR 271 (276)
Q Consensus 233 ~l~~~v~sp~g~t~~~l~~l~~~--~~~~~~~~a~~~~~~r 271 (276)
+|.+.+.++.... +.++.+++. .++..|..-++..++|
T Consensus 257 lw~dI~~~N~~~~-~~i~~~~~~l~~~~~~l~~~~~~~~~~ 296 (304)
T PLN02256 257 LYYGLFMYNPNAT-EELERLELAFDSVKKQLFGRLHDVLRK 296 (304)
T ss_pred HHHHHHHHChHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999998887777 888888774 6666666666666554
No 23
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.91 E-value=8.2e-23 Score=170.26 Aligned_cols=248 Identities=18% Similarity=0.178 Sum_probs=167.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeC-cccHHHH
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVDKAA 87 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~-~~~~~~v 87 (276)
..++|||||+|+||++|+.+|+++|| .|++| ||+.++.+.|.+.|..++.++.|++++||+||.+|| |.+++++
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~----kVtV~-dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v 108 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGY----KVTVY-DRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDV 108 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCC----EEEEE-eCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHH
Confidence 36899999999999999999999999 99999 999999999999999999999999999999999997 4578888
Q ss_pred HHHHh--hccccccCCcccCCCCcccH---HHHHHHcC--CCcEEEEecCccccc-----cCcceEeecCCCCCHHHHHH
Q 023866 88 VITEE--AFGFCCCRSEIERPSGLQRW---SRWVEWTG--HSRFIRVMPNTPSAV-----GEAATVMSLGGTATEEDGEL 155 (276)
Q Consensus 88 l~~~~--~~~~~~~~~~l~~~~g~~~~---~~l~~~l~--~~~vv~~~p~~~~~~-----~~g~~~i~~~~~~~~~~~~~ 155 (276)
+..-. ..++++.++..-..+.+ ++ .+|++... +.+++.+ |.+. .+|...+..+ .+++.++.
T Consensus 109 ~~g~~Gvl~g~~~g~~~~vDmSTi-dp~~s~ei~~~i~~~~~~~vDA----PVSGg~~~A~~G~Ltimag--Gde~~~~~ 181 (327)
T KOG0409|consen 109 LLGKSGVLSGIRPGKKATVDMSTI-DPDTSLEIAKAISNKGGRFVDA----PVSGGVKGAEEGTLTIMAG--GDEALFEA 181 (327)
T ss_pred hcCCCcceeeccCCCceEEecccc-CHHHHHHHHHHHHhCCCeEEec----cccCCchhhhcCeEEEEec--CcHHHHHH
Confidence 76531 01111112221111344 33 34544433 3445543 3322 2454444444 48999999
Q ss_pred HHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 023866 156 IGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHP 231 (276)
Q Consensus 156 v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~ 231 (276)
..++|+.+|+. ++++.----....++ .+..+...+.+++|+ +.+.|+|.....+++..+-..++.+ .+ .-|
T Consensus 182 ~~~~~~~mGk~~~~~G~~GnG~~~Kl~--nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~~~S~~~-~~--~~p 256 (327)
T KOG0409|consen 182 ASPVFKLMGKNVVFLGGVGNGQAAKLC--NNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGRCWSSMF-YN--PVP 256 (327)
T ss_pred HHHHHHHhcceEEEecccCchHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccHHH-hC--cCc
Confidence 99999999965 888873222222221 122345556666776 5699999999999998865554444 32 334
Q ss_pred HHHHHhcCCCCchHHHHHHHHH-------hCChHHHHHHHHHHHHHHHhh
Q 023866 232 GQLKDDVASPGGTTIAGIHELE-------KSGFRGILMNAVVAAAKRSRE 274 (276)
Q Consensus 232 ~~l~~~v~sp~g~t~~~l~~l~-------~~~~~~~~~~a~~~~~~r~~~ 274 (276)
. +.+..+.|++.+....++|. +.+.+-.+...-++.|++.+.
T Consensus 257 ~-m~k~dy~p~f~~~~m~KDLgla~~~a~~~~~~~P~~slA~qly~~~~a 305 (327)
T KOG0409|consen 257 G-MLKGDYNPGFALKLMVKDLGLALNAAESVKVPMPLGSLAHQLYKSMKA 305 (327)
T ss_pred h-hhcCCCCCcchHHHHHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHh
Confidence 4 44555799999988888763 224444555555666666554
No 24
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.91 E-value=2e-22 Score=171.68 Aligned_cols=248 Identities=17% Similarity=0.199 Sum_probs=180.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEE-eCCCHHHHHHHHHcCceec--cCc-hhhhcCCCEEEEeeCcccH
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTA-VHSNLKRRDAFESIGVKVL--SDN-NAVVEYSDVVVFSVKPQVD 84 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~-~~r~~~~~~~l~~~g~~~~--~~~-~~~~~~aDvI~lav~~~~~ 84 (276)
.+++|+|+|+|.||+++++.|.++|+ .+.++ ++++.++.+...+.|+.-. .+. .+.+.++|+||+|||...+
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~----~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~~ 77 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGL----VVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEAT 77 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCC----eEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHHH
Confidence 46899999999999999999999998 77666 1555555555545665421 222 5667789999999999999
Q ss_pred HHHHHHHhhccccccCCcccCC------CCc--ccHHHHHHHcCC-CcEEEEecCcccc-----ccCcceEeecCCCCCH
Q 023866 85 KAAVITEEAFGFCCCRSEIERP------SGL--QRWSRWVEWTGH-SRFIRVMPNTPSA-----VGEAATVMSLGGTATE 150 (276)
Q Consensus 85 ~~vl~~~~~~~~~~~~~~l~~~------~g~--~~~~~l~~~l~~-~~vv~~~p~~~~~-----~~~g~~~i~~~~~~~~ 150 (276)
.++++++ .+.+.++ .++ ...+.++++.++ .+++..||....+ +.....++++.+..+.
T Consensus 78 ~~~l~~l--------~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~ 149 (279)
T COG0287 78 EEVLKEL--------APHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAVVVLTPSEGTEK 149 (279)
T ss_pred HHHHHHh--------cccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCEEEEcCCCCCCH
Confidence 9999999 5555443 122 023556666653 3688888875441 1233466777776778
Q ss_pred HHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 023866 151 EDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGK 229 (276)
Q Consensus 151 ~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~ 229 (276)
+.++.+..+|+.+|.. +++++++||..++..++.|++++. ++.....+.+......+++.+.+|+..+++.. .
T Consensus 150 ~~~~~~~~~~~~~ga~~v~~~~eeHD~~~a~vshLpH~~a~---al~~~~~~~~~~~~~~~~~as~~frd~tRia~---~ 223 (279)
T COG0287 150 EWVEEVKRLWEALGARLVEMDAEEHDRVMAAVSHLPHAAAL---ALANALAKLETEELLVLKLASGGFRDITRIAS---S 223 (279)
T ss_pred HHHHHHHHHHHHcCCEEEEcChHHHhHHHHHHHHHHHHHHH---HHHHHHHhcCcchhHHHhccccchhhHHHHHc---C
Confidence 8999999999999954 889999999999999999998654 55555555555445578999999999998875 6
Q ss_pred ChHHHHHhcCCCCchHHHHHHHHHhC--ChHHHHH----HHHHHHHHHHhh
Q 023866 230 HPGQLKDDVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE 274 (276)
Q Consensus 230 ~~~~l~~~v~sp~g~t~~~l~~l~~~--~~~~~~~----~a~~~~~~r~~~ 274 (276)
+|.+|.+...++.....+.+..+.+. .+...+. +++.+.++++++
T Consensus 224 ~P~m~~dI~~~N~~~~l~~i~~~~~~l~~l~~~i~~~d~~~l~~~~~~a~~ 274 (279)
T COG0287 224 DPEMYADIQLSNKEALLEAIERFAKSLDELKELIENGDAEALADLFEEAKK 274 (279)
T ss_pred ChHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 89999999998888766666665543 2333333 456666766654
No 25
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.89 E-value=4.3e-21 Score=166.59 Aligned_cols=249 Identities=18% Similarity=0.153 Sum_probs=167.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHHHHH
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKAAVI 89 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~vl~ 89 (276)
+||+|||+|+||.+|+.+|.++|+ +|++| ||++++.+.+.+.|+..+.++.+++++||+||+|+|++ ++++++.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~----~V~v~-d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~ 76 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH----QLQVF-DVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLF 76 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC----eEEEE-cCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHc
Confidence 589999999999999999999999 99999 99999999998888887788888899999999999987 4788875
Q ss_pred HHh--hccccccCCcccCCCCcccH---HHHHHHcC--CCcEEEEecC--ccccccCcceEeecCCCCCHHHHHHHHHHh
Q 023866 90 TEE--AFGFCCCRSEIERPSGLQRW---SRWVEWTG--HSRFIRVMPN--TPSAVGEAATVMSLGGTATEEDGELIGKLF 160 (276)
Q Consensus 90 ~~~--~~~~~~~~~~l~~~~g~~~~---~~l~~~l~--~~~vv~~~p~--~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll 160 (276)
... ...+.++..++.. +.+ ++ .++.+.+. +..++.+ |. .+.....|...+..+ .+++.+++++++|
T Consensus 77 ~~~~i~~~l~~g~lvid~-sT~-~p~~~~~l~~~l~~~g~~~lda-pV~g~~~~a~~g~l~~~~g--g~~~~~~~~~p~l 151 (296)
T PRK15461 77 GENGVCEGLSRDALVIDM-STI-HPLQTDKLIADMQAKGFSMMDV-PVGRTSDNAITGTLLLLAG--GTAEQVERATPIL 151 (296)
T ss_pred CcccHhhcCCCCCEEEEC-CCC-CHHHHHHHHHHHHHcCCcEEEc-cCCCCHHHHHhCcEEEEEC--CCHHHHHHHHHHH
Confidence 321 0011111112222 333 33 34444443 3344433 21 122222344433333 3789999999999
Q ss_pred hhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 023866 161 GSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKD 236 (276)
Q Consensus 161 ~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~ 236 (276)
+.+|.. +++++..-...+.+. .+.+.......+.|+ +.+.|+|++...+++..+..++..+.. ..+..+.+
T Consensus 152 ~~~g~~~~~~g~~G~g~~~Kl~--~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~---~~~~~~~~ 226 (296)
T PRK15461 152 MAMGNELINAGGPGMGIRVKLI--NNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTT---TWPNKVLK 226 (296)
T ss_pred HHHcCCeEeeCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHc---cccchhcc
Confidence 999965 778774322333332 222333444455555 569999999999999887666655432 23434454
Q ss_pred hcCCCCchHHHHHHHH-------HhCChHHHHHHHHHHHHHHHhh
Q 023866 237 DVASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSRE 274 (276)
Q Consensus 237 ~v~sp~g~t~~~l~~l-------~~~~~~~~~~~a~~~~~~r~~~ 274 (276)
.-++|++++....+++ ++.+++..+.++..+.|+++.+
T Consensus 227 ~~~~~~f~~~~~~KD~~l~~~~a~~~g~~~p~~~~~~~~~~~a~~ 271 (296)
T PRK15461 227 GDLSPAFMIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQARA 271 (296)
T ss_pred CCCCCCcchHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHh
Confidence 5567888777776654 4568888888999988888765
No 26
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.88 E-value=1.1e-20 Score=163.77 Aligned_cols=209 Identities=16% Similarity=0.105 Sum_probs=147.3
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHH-HHHHHcCceeccCchhhhcCCCEEEEeeCcccHH
Q 023866 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR-DAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDK 85 (276)
Q Consensus 7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~-~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~ 85 (276)
..+.++|||||+|+||.+++.+|+++|+ +|.++ +|+.++. +...+.|+... +..+++++||+||++||++...
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~sG~----~Vvv~-~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~~~ 87 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRDSGV----DVVVG-LREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEVQA 87 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHHCCC----EEEEE-ECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHHHH
Confidence 3457899999999999999999999999 99888 6664443 44445787765 7889999999999999999888
Q ss_pred HHH-HHHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCcccc-------ccCcceEee-cCCCCCHHHHHH
Q 023866 86 AAV-ITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSA-------VGEAATVMS-LGGTATEEDGEL 155 (276)
Q Consensus 86 ~vl-~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~-------~~~g~~~i~-~~~~~~~~~~~~ 155 (276)
+++ .++. ..+++ ..++...+|. ++..++.+.| +.++++++||+|.. .|.|++.++ .....+.++.+.
T Consensus 88 ~V~~~~I~-~~Lk~-g~iL~~a~G~-~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~ 164 (330)
T PRK05479 88 EVYEEEIE-PNLKE-GAALAFAHGF-NIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDL 164 (330)
T ss_pred HHHHHHHH-hcCCC-CCEEEECCCC-ChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHH
Confidence 888 6662 01111 1233333788 8888877665 57899999999998 899998877 666678999999
Q ss_pred HHHHhhhcCce-E-----EcC-CCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Q 023866 156 IGKLFGSVGKI-W-----RAD-EKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVT 225 (276)
Q Consensus 156 v~~ll~~~G~~-~-----~~~-e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~ 225 (276)
+..+++.+|.. . ... |.+-|.+.. ......++..++.+-.+..++.|.+++.|+-=..+=++-...++.
T Consensus 165 a~~l~~aiG~~~~g~~~ttf~~e~~~dl~ge-q~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay~e~~~e~k~i~dl~~ 240 (330)
T PRK05479 165 ALAYAKGIGGTRAGVIETTFKEETETDLFGE-QAVLCGGLTELIKAGFETLVEAGYQPEMAYFECLHELKLIVDLIY 240 (330)
T ss_pred HHHHHHHcCCCccceeeeeecccccccchhh-HHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999953 2 222 322333322 111223444455555666789999999886543333344444443
No 27
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.88 E-value=6.1e-21 Score=170.35 Aligned_cols=235 Identities=12% Similarity=0.087 Sum_probs=169.6
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHH
Q 023866 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAA 87 (276)
Q Consensus 9 ~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~v 87 (276)
..++|+||| +|.||++++..|.++|+ +|++| +|+.. .+..+++.+||+||+|||+....++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~----~V~~~-d~~~~-------------~~~~~~~~~aDlVilavP~~~~~~~ 158 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGY----QVRIL-EQDDW-------------DRAEDILADAGMVIVSVPIHLTEEV 158 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCC----eEEEe-CCCcc-------------hhHHHHHhcCCEEEEeCcHHHHHHH
Confidence 568999998 99999999999999999 99999 98631 2445677899999999999999999
Q ss_pred HHHHhhccccccCCcccCCCCccc---HHHHHHHcCCCcEEEEecCcccccc--CcceEeecCCCCCHHHHHHHHHHhhh
Q 023866 88 VITEEAFGFCCCRSEIERPSGLQR---WSRWVEWTGHSRFIRVMPNTPSAVG--EAATVMSLGGTATEEDGELIGKLFGS 162 (276)
Q Consensus 88 l~~~~~~~~~~~~~~l~~~~g~~~---~~~l~~~l~~~~vv~~~p~~~~~~~--~g~~~i~~~~~~~~~~~~~v~~ll~~ 162 (276)
+.++. .+.+ ..++...+++ . ...+.+.++ .+++..||..+.... .+...+. .+..+++.++.+.++++.
T Consensus 159 ~~~l~--~l~~-~~iv~Dv~Sv-K~~~~~~~~~~~~-~~fvg~HPm~G~~~~~~~~~~vv~-~~~~~~~~~~~~~~l~~~ 232 (374)
T PRK11199 159 IARLP--PLPE-DCILVDLTSV-KNAPLQAMLAAHS-GPVLGLHPMFGPDVGSLAKQVVVV-CDGRQPEAYQWLLEQIQV 232 (374)
T ss_pred HHHHh--CCCC-CcEEEECCCc-cHHHHHHHHHhCC-CCEEeeCCCCCCCCcccCCCEEEE-cCCCCchHHHHHHHHHHH
Confidence 88872 1111 1122221332 2 244544444 368889987654322 2222222 334567788999999999
Q ss_pred cCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH----HHHHHHhcCCChHHHHHh
Q 023866 163 VGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLG----AASMVTKSGKHPGQLKDD 237 (276)
Q Consensus 163 ~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g----~~~~~~~~~~~~~~l~~~ 237 (276)
+|.. +++++++||..++++++.|++++. +++....+.+.+.+...++..++|+. +++++. .+|.+|.+.
T Consensus 233 lG~~v~~~~~~~HD~~~a~vshLpH~~a~---al~~~l~~~~~~~~~~~~~~~~~fr~~la~~tRia~---~~p~lw~dI 306 (374)
T PRK11199 233 WGARLHRISAVEHDQNMAFIQALRHFATF---AYGLHLAKENVDLEQLLALSSPIYRLELAMVGRLFA---QDPQLYADI 306 (374)
T ss_pred CCCEEEECCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHcCCCHHHHHHhcChHHHHHHHHHHHHHc---CCHHHHHHH
Confidence 9965 899999999999999999887644 33333444788888777888888888 777764 689999999
Q ss_pred cCCCCchHHHHHHHHHhC--ChHHHHH----HHHHHHHHHHhh
Q 023866 238 VASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE 274 (276)
Q Consensus 238 v~sp~g~t~~~l~~l~~~--~~~~~~~----~a~~~~~~r~~~ 274 (276)
..++.... +.++.+.+. .+...+. +.+.+.++++++
T Consensus 307 ~~~N~~~~-~~l~~~~~~l~~l~~~l~~~d~~~l~~~~~~a~~ 348 (374)
T PRK11199 307 IMSSPENL-ALIKRYYQRFGEALELLEQGDKQAFIDSFRKVEH 348 (374)
T ss_pred HHhChhHH-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 98887766 888777664 4555554 556666666653
No 28
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.88 E-value=1.5e-20 Score=162.55 Aligned_cols=247 Identities=16% Similarity=0.160 Sum_probs=166.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHHHHH
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKAAVI 89 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~vl~ 89 (276)
|||||||+|+||.+|+++|+++|+ +|++| +|+++ .+.+.+.|+..+.++.+++++||+||+|||+. ++++++.
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~----~v~v~-~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~ 74 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGH----QLHVT-TIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLF 74 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC----eEEEE-eCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHc
Confidence 589999999999999999999999 99999 99875 56777788888888889899999999999976 6778774
Q ss_pred HHh--hccccccCCcccCCCCcccHH---HHHHHcC--CCcEEEEecCccc--cccCcc-eEeecCCCCCHHHHHHHHHH
Q 023866 90 TEE--AFGFCCCRSEIERPSGLQRWS---RWVEWTG--HSRFIRVMPNTPS--AVGEAA-TVMSLGGTATEEDGELIGKL 159 (276)
Q Consensus 90 ~~~--~~~~~~~~~~l~~~~g~~~~~---~l~~~l~--~~~vv~~~p~~~~--~~~~g~-~~i~~~~~~~~~~~~~v~~l 159 (276)
... ..+..+++-++. .+++ +++ ++.+.+. +..++.+ |-... ....|. +.++.+ +++.+++++++
T Consensus 75 ~~~g~~~~~~~g~ivvd-~sT~-~p~~~~~~~~~~~~~G~~~vda-PVsGg~~~a~~g~l~~~~gG---~~~~~~~~~p~ 148 (292)
T PRK15059 75 GENGCTKASLKGKTIVD-MSSI-SPIETKRFARQVNELGGDYLDA-PVSGGEIGAREGTLSIMVGG---DEAVFERVKPL 148 (292)
T ss_pred CCcchhccCCCCCEEEE-CCCC-CHHHHHHHHHHHHHcCCCEEEe-cCCCCHHHHhcCcEEEEEcC---CHHHHHHHHHH
Confidence 310 001111111222 2555 543 3444432 3456654 43222 122444 334433 78999999999
Q ss_pred hhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 023866 160 FGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLK 235 (276)
Q Consensus 160 l~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~ 235 (276)
|+.+|.. +++++...-..+.+. .+.+++..+.++.|+ +.+.|+|.+...+++..+...+..+ .. ..+ .+.
T Consensus 149 l~~~g~~~~~~G~~G~g~~~Kl~--~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~-~~--~~~-~~~ 222 (292)
T PRK15059 149 FELLGKNITLVGGNGDGQTCKVA--NQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRIL-EV--HGE-RMI 222 (292)
T ss_pred HHHHcCCcEEeCCccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCHHH-Hh--hch-hhh
Confidence 9999964 889886544445443 234444456666666 4689999999999887655434333 32 223 344
Q ss_pred HhcCCCCchHHHHHHHH-------HhCChHHHHHHHHHHHHHHHhhc
Q 023866 236 DDVASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSREL 275 (276)
Q Consensus 236 ~~v~sp~g~t~~~l~~l-------~~~~~~~~~~~a~~~~~~r~~~~ 275 (276)
+.-++|+++.....+++ ++.|++..+.+++.+.|+.+.+.
T Consensus 223 ~~~~~~~f~l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~ 269 (292)
T PRK15059 223 KRTFNPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAAN 269 (292)
T ss_pred cCCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhc
Confidence 44457888877776654 45688888888888888887653
No 29
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.85 E-value=1.9e-19 Score=155.92 Aligned_cols=246 Identities=16% Similarity=0.128 Sum_probs=166.3
Q ss_pred EEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc-ccHHHHH---HH
Q 023866 15 FIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVDKAAV---IT 90 (276)
Q Consensus 15 iIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~-~~~~~vl---~~ 90 (276)
|||+|.||.+|+.+|.++|+ +|++| ||++++.+.+.+.|+..+.++.++++++|+||+|||+ +++++++ .+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~----~V~v~-dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~ 75 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGH----PVRVF-DLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEG 75 (288)
T ss_pred CCcccHhHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcch
Confidence 79999999999999999999 99999 9999999999988988888888999999999999997 5688887 44
Q ss_pred HhhccccccCCcccCCCCcccHH---HHHHHcC--CCcEEEEecCc--cccccCcc-eEeecCCCCCHHHHHHHHHHhhh
Q 023866 91 EEAFGFCCCRSEIERPSGLQRWS---RWVEWTG--HSRFIRVMPNT--PSAVGEAA-TVMSLGGTATEEDGELIGKLFGS 162 (276)
Q Consensus 91 ~~~~~~~~~~~~l~~~~g~~~~~---~l~~~l~--~~~vv~~~p~~--~~~~~~g~-~~i~~~~~~~~~~~~~v~~ll~~ 162 (276)
+.. .+.+++.++.. +++ +.+ .+.+.+. +..++.+ |.. +.....|. +.++.+ +++.+++++++|+.
T Consensus 76 l~~-~~~~g~~vid~-st~-~p~~~~~~~~~~~~~g~~~vda-Pv~Gg~~~a~~g~l~~~~gg---~~~~~~~~~~~l~~ 148 (288)
T TIGR01692 76 ILP-KVAKGSLLIDC-STI-DPDSARKLAELAAAHGAVFMDA-PVSGGVGGARAGTLTFMVGG---VAEEFAAAEPVLGP 148 (288)
T ss_pred Hhh-cCCCCCEEEEC-CCC-CHHHHHHHHHHHHHcCCcEEEC-CCCCCHHHHhhCcEEEEECC---CHHHHHHHHHHHHH
Confidence 411 11111222222 555 543 3444433 3445543 321 11122343 334443 67889999999999
Q ss_pred cCc-eEEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChH----HH
Q 023866 163 VGK-IWRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPG----QL 234 (276)
Q Consensus 163 ~G~-~~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~----~l 234 (276)
+|. .+++++......+.+.. +.+.+..+.++.|+ +.+.|+|.+...+++..+...+...... ...|. .+
T Consensus 149 ~g~~~~~~g~~g~g~~~Kl~~--n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~~~-~~~~~~~~~~~ 225 (288)
T TIGR01692 149 MGRNIVHCGDHGAGQAAKICN--NMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTY-NPVPGVMPQAP 225 (288)
T ss_pred hcCCeEeeCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHHHh-CCCcccccccc
Confidence 996 58888855555555542 33445555566665 4699999999999888665433323221 11111 22
Q ss_pred HHhcCCCCchHHHHHHHH-------HhCChHHHHHHHHHHHHHHHhhc
Q 023866 235 KDDVASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSREL 275 (276)
Q Consensus 235 ~~~v~sp~g~t~~~l~~l-------~~~~~~~~~~~a~~~~~~r~~~~ 275 (276)
.+..++|++.+...++++ ++.+++..+.+++.+.|+++.+.
T Consensus 226 ~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~ 273 (288)
T TIGR01692 226 ASNGYQGGFGTALMLKDLGLAQDAAKSAGAPTPLGALARQLYSLFDDK 273 (288)
T ss_pred ccCCCCCCcchHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhc
Confidence 334457888777776664 45688888889999999887653
No 30
>PLN02712 arogenate dehydrogenase
Probab=99.84 E-value=2.2e-19 Score=170.27 Aligned_cols=244 Identities=11% Similarity=0.061 Sum_probs=166.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhc-CCCEEEEeeCcccHHHH
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE-YSDVVVFSVKPQVDKAA 87 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~aDvI~lav~~~~~~~v 87 (276)
..+||||||+|+||.+++++|.+.|+ +|++| +|+.+. +...+.|+....+..+++. .+|+||+|||+..+.++
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~----~V~~~-dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~~~~~~v 441 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGH----TVLAY-SRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSILSTEKV 441 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcC----EEEEE-ECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCChHHHHHH
Confidence 46899999999999999999999998 99999 998654 4455678776667777665 58999999999999999
Q ss_pred HHHHhhccccccCCcccCCCC--cccHHHHHHHcC-CCcEEEEecCcccccc-Ccc---e-----EeecCCCCCHHHHHH
Q 023866 88 VITEEAFGFCCCRSEIERPSG--LQRWSRWVEWTG-HSRFIRVMPNTPSAVG-EAA---T-----VMSLGGTATEEDGEL 155 (276)
Q Consensus 88 l~~~~~~~~~~~~~~l~~~~g--~~~~~~l~~~l~-~~~vv~~~p~~~~~~~-~g~---~-----~i~~~~~~~~~~~~~ 155 (276)
+.++....++++.-+++..++ . ..+.+.+.++ +.++++.||+.+...+ .|. . .++.++....+..+.
T Consensus 442 i~~l~~~~lk~g~ivvDv~SvK~~-~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~~lf~~~~v~~~~~~~~~~~~ 520 (667)
T PLN02712 442 LKSLPFQRLKRSTLFVDVLSVKEF-PRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLAFVFDKVRIGSDDRRVSRCDS 520 (667)
T ss_pred HHHHHHhcCCCCcEEEECCCccHH-HHHHHHHhccCCCceEeeCCCCCccccccchhhhhhhccCcEeCCCcchHHHHHH
Confidence 888721011111112222122 3 4567777776 4679999999877654 231 1 112222223445566
Q ss_pred HHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-cCCChHH
Q 023866 156 IGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTK-SGKHPGQ 233 (276)
Q Consensus 156 v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~-~~~~~~~ 233 (276)
+.++|+.+|.. ++++.++||..+|.+++.|+.++. ...+.|++ ...+...+++....++.+ .+.+|..
T Consensus 521 l~~l~~~lGa~vv~ms~eeHD~~~A~vShLpHlla~-------~L~~~~~~---~~~~~~~gfr~l~~Li~Ria~~~p~l 590 (667)
T PLN02712 521 FLDIFAREGCRMVEMSCAEHDWHAAGSQFITHTMGR-------LLEKLGLE---STPINTKGYETLLNLVENTAGDSFDL 590 (667)
T ss_pred HHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHH-------HHHHCCCc---ccccccHHHHHHHHHHHhhcCCCHHH
Confidence 77999999965 889999999999999988886542 23345554 134555566666544432 3468999
Q ss_pred HHHhcCCCCchHHHHHHHHHhC--ChHHHHHHHHHHHHH
Q 023866 234 LKDDVASPGGTTIAGIHELEKS--GFRGILMNAVVAAAK 270 (276)
Q Consensus 234 l~~~v~sp~g~t~~~l~~l~~~--~~~~~~~~a~~~~~~ 270 (276)
|.+.+..+... .+.|+.++.. .++..|.+-++.+++
T Consensus 591 ~~dI~~~N~~a-~~~l~~f~~~l~~~~~~l~~~~~~~~~ 628 (667)
T PLN02712 591 YYGLFMYNVNA-MEQLERLDLAFESLKKQLFGRLHGVLR 628 (667)
T ss_pred HHHHHHHChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887666 6777777654 566666666665543
No 31
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.84 E-value=1.2e-18 Score=151.15 Aligned_cols=246 Identities=17% Similarity=0.151 Sum_probs=162.3
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHHHHH-
Q 023866 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKAAVI- 89 (276)
Q Consensus 12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~vl~- 89 (276)
||||||+|.||.+|+..|.+.|+ +|++| ||++++.+.+.+.|.....+..+++++||+||+|+|+. +++.++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~----~V~~~-dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~ 75 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY----QLHVT-TIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFG 75 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC----eEEEE-cCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcC
Confidence 69999999999999999999999 99999 99999999998888877778888899999999999975 5666652
Q ss_pred --HHhhccccccCCcccCCCCcccH---HHHHHHcC--CCcEEEEecCcc--ccccCcc-eEeecCCCCCHHHHHHHHHH
Q 023866 90 --TEEAFGFCCCRSEIERPSGLQRW---SRWVEWTG--HSRFIRVMPNTP--SAVGEAA-TVMSLGGTATEEDGELIGKL 159 (276)
Q Consensus 90 --~~~~~~~~~~~~~l~~~~g~~~~---~~l~~~l~--~~~vv~~~p~~~--~~~~~g~-~~i~~~~~~~~~~~~~v~~l 159 (276)
.+. ....++..++.. +++ ++ +.+.+.+. +.+++. .|... .....+. ..++.+ +++.++.++++
T Consensus 76 ~~~~~-~~~~~g~iivd~-st~-~~~~~~~l~~~l~~~g~~~~~-~pv~g~~~~a~~g~l~i~~gg---~~~~~~~~~~l 148 (291)
T TIGR01505 76 ENGII-EGAKPGKTLVDM-SSI-SPIESKRFAKAVKEKGIDYLD-APVSGGEIGAIEGTLSIMVGG---DQAVFDRVKPL 148 (291)
T ss_pred cchHh-hcCCCCCEEEEC-CCC-CHHHHHHHHHHHHHcCCCEEe-cCCCCCHHHHhcCCEEEEecC---CHHHHHHHHHH
Confidence 221 011111222222 333 33 34555543 344554 24221 1112333 344443 68899999999
Q ss_pred hhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 023866 160 FGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLK 235 (276)
Q Consensus 160 l~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~ 235 (276)
|+.+|.. +++++......+.+. .+.+.+..++++.|+ +.+.|+|+++..+++..+..++..+.. ..+ .+.
T Consensus 149 l~~lg~~~~~~g~~g~a~~~Kl~--~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~---~~~-~~~ 222 (291)
T TIGR01505 149 FEALGKNIVLVGGNGDGQTCKVA--NQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEV---KGE-RVI 222 (291)
T ss_pred HHHhcCCeEEeCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHh---hCh-hhh
Confidence 9999964 778774333333333 233444445556555 568999999999999877665544322 122 344
Q ss_pred HhcCCCCchHHHHHHH-------HHhCChHHHHHHHHHHHHHHHhhc
Q 023866 236 DDVASPGGTTIAGIHE-------LEKSGFRGILMNAVVAAAKRSREL 275 (276)
Q Consensus 236 ~~v~sp~g~t~~~l~~-------l~~~~~~~~~~~a~~~~~~r~~~~ 275 (276)
+.-++|++......++ .++.|+...+.++..+.|+++.+.
T Consensus 223 ~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~ 269 (291)
T TIGR01505 223 DRTFKPGFRIDLHQKDLNLALDSAKAVGANLPNTATVQELFNTLRAN 269 (291)
T ss_pred cCCCCCCcchHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHhc
Confidence 4444687776544443 456688888888888888887653
No 32
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.83 E-value=4.4e-19 Score=156.66 Aligned_cols=232 Identities=11% Similarity=0.077 Sum_probs=158.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhC-CCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHH
Q 023866 9 ESFILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKA 86 (276)
Q Consensus 9 ~~~kIgiIG~-G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~ 86 (276)
..+||+|||+ |.||+++++.|.+. ++ +|+++ |++.+ ...++.+.+.+||+||+|||+..+.+
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~----~V~g~-D~~d~-----------~~~~~~~~v~~aDlVilavPv~~~~~ 66 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQL----EVIGH-DPADP-----------GSLDPATLLQRADVLIFSAPIRHTAA 66 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCC----EEEEE-cCCcc-----------ccCCHHHHhcCCCEEEEeCCHHHHHH
Confidence 4689999999 99999999999864 66 89999 88511 12355677899999999999999999
Q ss_pred HHHHHhhccccccCCc---ccCC------CCcccHHHHHHHcC-CCcEEEEecCccccc-c--Ccc-eEeecCCCCCHHH
Q 023866 87 AVITEEAFGFCCCRSE---IERP------SGLQRWSRWVEWTG-HSRFIRVMPNTPSAV-G--EAA-TVMSLGGTATEED 152 (276)
Q Consensus 87 vl~~~~~~~~~~~~~~---l~~~------~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~-~--~g~-~~i~~~~~~~~~~ 152 (276)
+++++ .++ ++++ .++ ...-++..++ ..+++..||....+. + ++. .++++. ...+.
T Consensus 67 ~l~~l--------~~~~~~l~~~~iVtDVgSv-K~~i~~~~~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~--~~~~~ 135 (370)
T PRK08818 67 LIEEY--------VALAGGRAAGQLWLDVTSI-KQAPVAAMLASQAEVVGLHPMTAPPKSPTLKGRVMVVCEA--RLQHW 135 (370)
T ss_pred HHHHH--------hhhhcCCCCCeEEEECCCC-cHHHHHHHHhcCCCEEeeCCCCCCCCCcccCCCeEEEeCC--CchhH
Confidence 99998 332 3332 333 3333343333 357899999865432 1 233 344543 34455
Q ss_pred HHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHH-HH---HHHH
Q 023866 153 GELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLP---RELALGLASQTVL-GA---ASMV 224 (276)
Q Consensus 153 ~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~---~~~a~~~~~~~~~-g~---~~~~ 224 (276)
.+.++++++.+|.. +++++++||.++|.+++.||+.+..+..+.. ..... .+....+...+|+ ++ ++++
T Consensus 136 ~~~v~~l~~~~Ga~v~~~~aeeHD~~~A~vS~LsHl~~l~~~~~~~---~~~~~~~~~~~~~~f~~~gFr~d~t~iTRIA 212 (370)
T PRK08818 136 SPWVQSLCSALQAECVYATPEHHDRVMALVQAMVHATHLAQAGVLR---DYAPLLGELRALMPYRSASFELDTAVIARIL 212 (370)
T ss_pred HHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccchhhhhhhccccchhhHHHhhhcchhh
Confidence 78899999999965 8899999999999998888876655444432 11110 1111246666676 33 4665
Q ss_pred HhcCCChHHHHHhcCCCCchHHHHHHHHHhC--ChHHHHH----HHHHHH---HHHHhh
Q 023866 225 TKSGKHPGQLKDDVASPGGTTIAGIHELEKS--GFRGILM----NAVVAA---AKRSRE 274 (276)
Q Consensus 225 ~~~~~~~~~l~~~v~sp~g~t~~~l~~l~~~--~~~~~~~----~a~~~~---~~r~~~ 274 (276)
. .+|.+|.+...++. ...+.++.+.+. .+...+. +++.+. ++++++
T Consensus 213 s---s~P~mW~dI~~~N~-~i~~~l~~~~~~L~~l~~~i~~~D~~~~~~~~~~f~~a~~ 267 (370)
T PRK08818 213 S---LNPSIYEDIQFGNP-YVGEMLDRLLAQLQELRALVAQGDDAARARFRAQFLHANA 267 (370)
T ss_pred c---CCHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 4 68999999999888 788888877664 4555554 445555 666655
No 33
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.83 E-value=2e-18 Score=150.23 Aligned_cols=199 Identities=14% Similarity=0.112 Sum_probs=135.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcC---CCEEEEeeCcc-cHHH
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEY---SDVVVFSVKPQ-VDKA 86 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~---aDvI~lav~~~-~~~~ 86 (276)
|+|||||+|+||.+|+.+|.++|+ +|++| ||++++.+.+.+.|+..+.++.+++++ +|+||+|+|++ ++++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~----~v~v~-dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~ 75 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGH----EVVGY-DVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTES 75 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHH
Confidence 589999999999999999999999 99999 999999999988898888888888765 69999999988 8899
Q ss_pred HHHHHhhccccccCCcccCCCCcc--cHHHHHHHcC--CCcEEEEe-cCccccccCcceEeecCCCCCHHHHHHHHHHhh
Q 023866 87 AVITEEAFGFCCCRSEIERPSGLQ--RWSRWVEWTG--HSRFIRVM-PNTPSAVGEAATVMSLGGTATEEDGELIGKLFG 161 (276)
Q Consensus 87 vl~~~~~~~~~~~~~~l~~~~g~~--~~~~l~~~l~--~~~vv~~~-p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~ 161 (276)
++.++.. .++++.-++.. +++. ...++.+.+. +..++.+. ...+.....|.+.++.| +++.+++++++|+
T Consensus 76 v~~~i~~-~l~~g~ivid~-st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~~~~~gG---~~~~~~~~~~~l~ 150 (299)
T PRK12490 76 VIKDLYP-LLSPGDIVVDG-GNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCLMVGG---DKEIYDRLEPVFK 150 (299)
T ss_pred HHHHHhc-cCCCCCEEEEC-CCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCCeEEecC---CHHHHHHHHHHHH
Confidence 9887721 11111122222 3330 2233444332 33444321 11222223455545544 7899999999999
Q ss_pred hcCc----eEEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcC--CCHHHHHHHHHH-HHHHHH
Q 023866 162 SVGK----IWRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAG--LPRELALGLASQ-TVLGAA 221 (276)
Q Consensus 162 ~~G~----~~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~G--l~~~~a~~~~~~-~~~g~~ 221 (276)
.+|. .+++++-.-...+.+. .+.+++..+.++.|+ +.+.| +|.+.+.+++.. +...+.
T Consensus 151 ~~~~~~~~~~~~G~~g~a~~~Kl~--~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~ 218 (299)
T PRK12490 151 ALAPEGPGYVHAGPVGSGHFLKMV--HNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSW 218 (299)
T ss_pred HhcCcCCcEEEECCcCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHH
Confidence 9995 4788874333333332 244556667777776 45788 999999999985 334433
No 34
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.82 E-value=1.8e-18 Score=157.90 Aligned_cols=194 Identities=13% Similarity=0.096 Sum_probs=132.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc----Cce---eccCchhhhcC---CCEEE
Q 023866 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI----GVK---VLSDNNAVVEY---SDVVV 76 (276)
Q Consensus 7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~----g~~---~~~~~~~~~~~---aDvI~ 76 (276)
..++++|||||+|.||.+|+.+|+++|+ +|++| ||++++.+.+.+. |.. .+.++.++++. +|+||
T Consensus 3 ~~~~~~IG~IGLG~MG~~mA~nL~~~G~----~V~V~-NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi 77 (493)
T PLN02350 3 SAALSRIGLAGLAVMGQNLALNIAEKGF----PISVY-NRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVI 77 (493)
T ss_pred CCCCCCEEEEeeHHHHHHHHHHHHhCCC----eEEEE-CCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEE
Confidence 3467899999999999999999999999 99999 9999999988763 543 56788888876 99999
Q ss_pred EeeCcc-cHHHHHHHHhhccccccCCcccCCCCcccH---HHHHHHcC--CCcEEEEecC--ccccccCcceEeecCCCC
Q 023866 77 FSVKPQ-VDKAAVITEEAFGFCCCRSEIERPSGLQRW---SRWVEWTG--HSRFIRVMPN--TPSAVGEAATVMSLGGTA 148 (276)
Q Consensus 77 lav~~~-~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~---~~l~~~l~--~~~vv~~~p~--~~~~~~~g~~~i~~~~~~ 148 (276)
+||+.. ++++|+.++. ..+.++.-++.. +.+ +. ..+.+.+. +.+++.+ |- .+.....|.++++.|
T Consensus 78 ~~v~~~~aV~~Vi~gl~-~~l~~G~iiID~-sT~-~~~~t~~~~~~l~~~Gi~flda-pVSGG~~gA~~G~~im~GG--- 150 (493)
T PLN02350 78 ILVKAGAPVDQTIKALS-EYMEPGDCIIDG-GNE-WYENTERRIKEAAEKGLLYLGM-GVSGGEEGARNGPSLMPGG--- 150 (493)
T ss_pred EECCCcHHHHHHHHHHH-hhcCCCCEEEEC-CCC-CHHHHHHHHHHHHHcCCeEEeC-CCcCCHHHhcCCCeEEecC---
Confidence 999865 6888887662 111111222222 333 22 23333332 3455543 22 222234566555544
Q ss_pred CHHHHHHHHHHhhhcCc-------eEEcCCCCchhhhhhcCchHHHHHHHHHHHHHHH---HH-cCCCHHHHHHHHH
Q 023866 149 TEEDGELIGKLFGSVGK-------IWRADEKLFDAITGLSGSGPAYIFLAIEALADGG---VA-AGLPRELALGLAS 214 (276)
Q Consensus 149 ~~~~~~~v~~ll~~~G~-------~~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~---~~-~Gl~~~~a~~~~~ 214 (276)
+++++++++++|+.+|. ++++++.---.++.+. .+.+.+..++++.|+. .+ .|++.++..+++.
T Consensus 151 ~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv--~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~ 225 (493)
T PLN02350 151 SFEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMV--HNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFA 225 (493)
T ss_pred CHHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 88999999999999992 4788875443444443 2445667788888874 45 5999999888743
No 35
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.82 E-value=6.4e-20 Score=145.64 Aligned_cols=151 Identities=23% Similarity=0.348 Sum_probs=103.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc-ccHHHHH
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVDKAAV 88 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~-~~~~~vl 88 (276)
|+||||||+|.||+.|+++|.++|| +|++| ||++++.+.+.+.|+..+.++.+++++||+||+|+|+ +++++++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~----~v~~~-d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~ 75 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGY----EVTVY-DRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVL 75 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTT----EEEEE-ESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCC----eEEee-ccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhh
Confidence 6899999999999999999999999 99999 9999999999999999999999999999999999987 5789998
Q ss_pred HH--HhhccccccCCcccCCCCcccH---HHHHHHcC--CCcEEEE-ecCccccccCcc-eEeecCCCCCHHHHHHHHHH
Q 023866 89 IT--EEAFGFCCCRSEIERPSGLQRW---SRWVEWTG--HSRFIRV-MPNTPSAVGEAA-TVMSLGGTATEEDGELIGKL 159 (276)
Q Consensus 89 ~~--~~~~~~~~~~~~l~~~~g~~~~---~~l~~~l~--~~~vv~~-~p~~~~~~~~g~-~~i~~~~~~~~~~~~~v~~l 159 (276)
.+ +. ..+.++.-++.. +.+ ++ .++.+.+. +.+++.+ +...|.....|. +.+..+ +++.+++++++
T Consensus 76 ~~~~i~-~~l~~g~iiid~-sT~-~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG---~~~~~~~~~~~ 149 (163)
T PF03446_consen 76 FGENIL-AGLRPGKIIIDM-STI-SPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGG---DEEAFERVRPL 149 (163)
T ss_dssp HCTTHG-GGS-TTEEEEE--SS---HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES----HHHHHHHHHH
T ss_pred hhhHHh-hccccceEEEec-CCc-chhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccC---CHHHHHHHHHH
Confidence 87 51 011111112211 444 44 34444443 3445443 112222333454 455544 78999999999
Q ss_pred hhhcCce-E-EcCC
Q 023866 160 FGSVGKI-W-RADE 171 (276)
Q Consensus 160 l~~~G~~-~-~~~e 171 (276)
|+.+|.. + +++|
T Consensus 150 l~~~~~~v~~~~G~ 163 (163)
T PF03446_consen 150 LEAMGKNVYHYVGP 163 (163)
T ss_dssp HHHHEEEEEEE-ES
T ss_pred HHHHhCCceeeeCc
Confidence 9999975 5 3454
No 36
>PLN02858 fructose-bisphosphate aldolase
Probab=99.82 E-value=2.2e-18 Score=174.16 Aligned_cols=247 Identities=11% Similarity=0.068 Sum_probs=169.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHHHH
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKAAV 88 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~vl 88 (276)
..||||||+|.||..|+.+|+++|| +|++| ||++++.+.+.+.|+..+.++.+++++||+||+|+|+. ++++|+
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~----~v~v~-dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~ 78 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGF----KVQAF-EISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVF 78 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCC----eEEEE-cCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHH
Confidence 4689999999999999999999999 99999 99999999999999999999999999999999999864 678887
Q ss_pred HH---HhhccccccCCcccCCCCcccHH---HHHHHcC--C--CcEEEEecC--ccccccCcce-EeecCCCCCHHHHHH
Q 023866 89 IT---EEAFGFCCCRSEIERPSGLQRWS---RWVEWTG--H--SRFIRVMPN--TPSAVGEAAT-VMSLGGTATEEDGEL 155 (276)
Q Consensus 89 ~~---~~~~~~~~~~~~l~~~~g~~~~~---~l~~~l~--~--~~vv~~~p~--~~~~~~~g~~-~i~~~~~~~~~~~~~ 155 (276)
.. +. .++.++.-++. .+.+ +++ ++.+.+. + ..++.+ |- .+.....|.. +++.+ +++.+++
T Consensus 79 ~g~~g~~-~~l~~g~iivd-~STi-~p~~~~~la~~l~~~g~~~~~lDa-PVsGg~~~A~~G~L~imvGG---~~~~~~~ 151 (1378)
T PLN02858 79 FGDEGAA-KGLQKGAVILI-RSTI-LPLQLQKLEKKLTERKEQIFLVDA-YVSKGMSDLLNGKLMIIASG---RSDAITR 151 (1378)
T ss_pred hchhhHH-hcCCCcCEEEE-CCCC-CHHHHHHHHHHHHhcCCceEEEEc-cCcCCHHHHhcCCeEEEEcC---CHHHHHH
Confidence 42 21 11111112222 2455 443 3433332 2 234443 21 2222234443 44544 7889999
Q ss_pred HHHHhhhcCce-EE-cCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q 023866 156 IGKLFGSVGKI-WR-ADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKH 230 (276)
Q Consensus 156 v~~ll~~~G~~-~~-~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~ 230 (276)
++++|+.+|.. ++ .++..-...+.+. .+.+++..+.++.|+ +.+.|++++..++++..+..++..+.. ..
T Consensus 152 ~~p~l~~~g~~i~~~~G~~G~g~~~KL~--nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~---~~ 226 (1378)
T PLN02858 152 AQPFLSAMCQKLYTFEGEIGAGSKVKMV--NELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKN---HV 226 (1378)
T ss_pred HHHHHHHhcCceEEecCCCCHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHh---hh
Confidence 99999999965 54 4663322233322 233444555667776 579999999999999888765554432 23
Q ss_pred hHHHHHhcCCCCchHHHHHHHH-------HhCChHHHHHHHHHHHHHHHhh
Q 023866 231 PGQLKDDVASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSRE 274 (276)
Q Consensus 231 ~~~l~~~v~sp~g~t~~~l~~l-------~~~~~~~~~~~a~~~~~~r~~~ 274 (276)
+ .+.+.-++|+++...+.+++ ++.++.-.+.++..+.|+++.+
T Consensus 227 ~-~~~~~d~~~~F~l~l~~KDl~la~~~A~~~g~~lpl~~~a~~~~~~a~~ 276 (1378)
T PLN02858 227 P-LLLKDDYIEGRFLNVLVQNLGIVLDMAKSLPFPLPLLAVAHQQLISGSS 276 (1378)
T ss_pred h-HhhcCCCCCCchhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHh
Confidence 3 44455568888888887765 4568888888888888887765
No 37
>PLN02712 arogenate dehydrogenase
Probab=99.82 E-value=2.4e-18 Score=163.18 Aligned_cols=242 Identities=12% Similarity=0.060 Sum_probs=159.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhh-cCCCEEEEeeCcccHHHHH
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVV-EYSDVVVFSVKPQVDKAAV 88 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~aDvI~lav~~~~~~~vl 88 (276)
.++|||||+|+||.+++.+|.+.|+ +|++| +|+..+ +...+.|+....+..+++ .++|+||+|||++.+.+++
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~----~V~~~-dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl 125 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGH----TVLAH-SRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSIISTENVL 125 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCC----EEEEE-eCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHH
Confidence 5899999999999999999999998 99999 998544 455567887777777755 5699999999999999999
Q ss_pred HHHhhccccccCCcccCCCCccc---HHHHHHHcC-CCcEEEEecCcccccc----Ccce-Eee----cCCCCCHHHHHH
Q 023866 89 ITEEAFGFCCCRSEIERPSGLQR---WSRWVEWTG-HSRFIRVMPNTPSAVG----EAAT-VMS----LGGTATEEDGEL 155 (276)
Q Consensus 89 ~~~~~~~~~~~~~~l~~~~g~~~---~~~l~~~l~-~~~vv~~~p~~~~~~~----~g~~-~i~----~~~~~~~~~~~~ 155 (276)
.++....+++ ..++....++ . .+.+.+.++ +..+++.||+...+.. .+.. +++ ..+....+..+.
T Consensus 126 ~~l~~~~l~~-g~iVvDv~Sv-K~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (667)
T PLN02712 126 KSLPLQRLKR-NTLFVDVLSV-KEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKS 203 (667)
T ss_pred HhhhhhcCCC-CeEEEECCCC-cHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHH
Confidence 8872001111 1122221233 2 245666776 4679999998654321 1222 222 111122345667
Q ss_pred HHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 023866 156 IGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGL-PRELALGLASQTVLGAASMVTKSGKHPGQ 233 (276)
Q Consensus 156 v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl-~~~~a~~~~~~~~~g~~~~~~~~~~~~~~ 233 (276)
+.++|+.+|.. +.++.++||.++|.+++.||+++..+..+.-......- ..+...+++ .+++. .+|+.
T Consensus 204 l~~l~~~lGa~v~~ms~eeHD~~~A~vshLpH~la~~L~~~~~~~~~~~~~~~~~~l~l~-------~Ria~---~~p~L 273 (667)
T PLN02712 204 FLEVFEREGCKMVEMSCTEHDKYAAESQFITHTVGRVLEMLKLESTPINTKGYESLLDLV-------ENTCG---DSFDL 273 (667)
T ss_pred HHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCccHHHHHHHH-------HHHhc---CCHHH
Confidence 78999999965 88999999999999999999876654322210000100 122222332 44543 68999
Q ss_pred HHHhcCCCCchHHHHHHHHHhC--ChHHHHHHHHHHHHH
Q 023866 234 LKDDVASPGGTTIAGIHELEKS--GFRGILMNAVVAAAK 270 (276)
Q Consensus 234 l~~~v~sp~g~t~~~l~~l~~~--~~~~~~~~a~~~~~~ 270 (276)
|.+.+..+. ...+.|+.+++. .++..|..-++..++
T Consensus 274 ~~dI~~~N~-~~~~~l~~~~~~l~~~~~~l~~~~~~~~~ 311 (667)
T PLN02712 274 YYGLFMYNK-NSLEMLERLDLAFEALRKQLFGRLHGVVR 311 (667)
T ss_pred HHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998877 777788887764 556666555555443
No 38
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.81 E-value=3.4e-18 Score=149.74 Aligned_cols=190 Identities=17% Similarity=0.161 Sum_probs=134.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----cC--------------ceeccCchhhh
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IG--------------VKVLSDNNAVV 69 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g--------------~~~~~~~~~~~ 69 (276)
..+||+|||+|.||.+|+..|.++|+ +|++| |+++++++.+.+ .+ +..+.+..+++
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~g~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 77 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARKGL----QVVLI-DVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAV 77 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHh
Confidence 35789999999999999999999999 99999 999988776653 12 23455677778
Q ss_pred cCCCEEEEeeCccc--HHHHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcceEeecC
Q 023866 70 EYSDVVVFSVKPQV--DKAAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAATVMSLG 145 (276)
Q Consensus 70 ~~aDvI~lav~~~~--~~~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~~i~~~ 145 (276)
++||+||+|||++. ..+++.++. ...++..++ +..+|+ +...+++.++ ..+++++||+.|...+.. ..++++
T Consensus 78 ~~aDlVi~av~~~~~~~~~v~~~l~--~~~~~~~ii~s~tsg~-~~~~l~~~~~~~~~~ig~h~~~p~~~~~l-~~i~~g 153 (311)
T PRK06130 78 SGADLVIEAVPEKLELKRDVFARLD--GLCDPDTIFATNTSGL-PITAIAQAVTRPERFVGTHFFTPADVIPL-VEVVRG 153 (311)
T ss_pred ccCCEEEEeccCcHHHHHHHHHHHH--HhCCCCcEEEECCCCC-CHHHHHhhcCCcccEEEEccCCCCccCce-EEEeCC
Confidence 99999999999874 567777763 111112233 455888 8888988876 367999999999877663 445677
Q ss_pred CCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHH
Q 023866 146 GTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQT 216 (276)
Q Consensus 146 ~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~ 216 (276)
+.++++.++.+.++|+.+|.. ++++.+.. .+. .+-+++ ..+.|+ ..+.|+++++..+++..+
T Consensus 154 ~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~-G~i-----~nr~~~---~~~~Ea~~l~~~g~~~~~~id~~~~~~ 219 (311)
T PRK06130 154 DKTSPQTVATTMALLRSIGKRPVLVKKDIP-GFI-----ANRIQH---ALAREAISLLEKGVASAEDIDEVVKWS 219 (311)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEcCCCC-CcH-----HHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 778999999999999999976 66654321 110 011111 122222 345678998888877533
No 39
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.81 E-value=8.7e-18 Score=146.12 Aligned_cols=247 Identities=19% Similarity=0.179 Sum_probs=157.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHHHH
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKAAV 88 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~vl 88 (276)
+|||||||+|.||.+++..|.+.|+ +|++| ||++++.+.+.+.|+..+.+..+++++||+||+|+|+. .++.++
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~----~v~~~-d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~ 76 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGY----SLVVY-DRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVA 76 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCC----eEEEE-cCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHH
Confidence 3689999999999999999999998 99999 99999999888888887778888899999999999864 566665
Q ss_pred H---HHhhccccccCCcccCCCCcccH---HHHHHHcC--CCcEEEEecC---ccccccCc-ceEeecCCCCCHHHHHHH
Q 023866 89 I---TEEAFGFCCCRSEIERPSGLQRW---SRWVEWTG--HSRFIRVMPN---TPSAVGEA-ATVMSLGGTATEEDGELI 156 (276)
Q Consensus 89 ~---~~~~~~~~~~~~~l~~~~g~~~~---~~l~~~l~--~~~vv~~~p~---~~~~~~~g-~~~i~~~~~~~~~~~~~v 156 (276)
. ++. ..+.++.-++.. +++ ++ +.+.+.+. +.+++.. |. .+.. ..| .+.++.+ +++.++.+
T Consensus 77 ~~~~~~~-~~~~~g~iiid~-st~-~~~~~~~l~~~~~~~g~~~~d~-pv~g~~~~a-~~g~l~i~~gg---~~~~~~~~ 148 (296)
T PRK11559 77 LGENGII-EGAKPGTVVIDM-SSI-APLASREIAAALKAKGIEMLDA-PVSGGEPKA-IDGTLSVMVGG---DKAIFDKY 148 (296)
T ss_pred cCcchHh-hcCCCCcEEEEC-CCC-CHHHHHHHHHHHHHcCCcEEEc-CCCCCHHHH-hhCcEEEEECC---CHHHHHHH
Confidence 2 231 011111222222 334 33 34555543 2334332 21 1111 123 3444433 68899999
Q ss_pred HHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 023866 157 GKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPG 232 (276)
Q Consensus 157 ~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~ 232 (276)
.++|+.+|.. +++++..-...+.+. .+.+.+..+..+.|+ +.+.|++.++..+++..+..++..+.. ..+.
T Consensus 149 ~~~l~~~~~~~~~~g~~g~a~~~Kl~--~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~---~~~~ 223 (296)
T PRK11559 149 YDLMKAMAGSVVHTGDIGAGNVTKLA--NQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDA---KAPM 223 (296)
T ss_pred HHHHHHhcCCeEEeCCcCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHh---hchH
Confidence 9999999964 777753222222222 233333333344444 568999999998888766544433322 2344
Q ss_pred HHHHhcCCCCchHHHHHH-------HHHhCChHHHHHHHHHHHHHHHhhc
Q 023866 233 QLKDDVASPGGTTIAGIH-------ELEKSGFRGILMNAVVAAAKRSREL 275 (276)
Q Consensus 233 ~l~~~v~sp~g~t~~~l~-------~l~~~~~~~~~~~a~~~~~~r~~~~ 275 (276)
+.+..++|+++.....+ ..++.++...+.+++.+.|+++.+.
T Consensus 224 -~~~~d~~~~f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~ 272 (296)
T PRK11559 224 -VMDRNFKPGFRIDLHIKDLANALDTSHGVGAPLPLTAAVMEMMQALKAD 272 (296)
T ss_pred -hhcCCCCCCcchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhc
Confidence 33344467776555444 3456688888888888888877653
No 40
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.80 E-value=1.9e-17 Score=153.20 Aligned_cols=188 Identities=16% Similarity=0.116 Sum_probs=135.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-------------------cC-ceeccCchhhh
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------IG-VKVLSDNNAVV 69 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~ 69 (276)
.+||||||+|.||.+||.+|+++|+ +|++| |+++++.+.+.+ .| +..+++..+++
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~----~V~v~-D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~ 78 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGI----DVAVF-DPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAV 78 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHh
Confidence 3689999999999999999999999 99999 999988765431 13 56677888889
Q ss_pred cCCCEEEEeeCccc-HH-HHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcceEeecC
Q 023866 70 EYSDVVVFSVKPQV-DK-AAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAATVMSLG 145 (276)
Q Consensus 70 ~~aDvI~lav~~~~-~~-~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~~i~~~ 145 (276)
++||+||.|+|++. ++ .++.++.. ...+ ..++ +..+|+ +.+.+++.+. ..+++..||+.|...+..+ .++++
T Consensus 79 ~~aD~Vieavpe~~~vk~~l~~~l~~-~~~~-~~iI~SsTsgi-~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lv-evv~g 154 (495)
T PRK07531 79 AGADWIQESVPERLDLKRRVLAEIDA-AARP-DALIGSSTSGF-LPSDLQEGMTHPERLFVAHPYNPVYLLPLV-ELVGG 154 (495)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHh-hCCC-CcEEEEcCCCC-CHHHHHhhcCCcceEEEEecCCCcccCceE-EEcCC
Confidence 99999999999874 44 45555521 1111 2233 445888 7888888775 3578999999888766533 56778
Q ss_pred CCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHH-HHH---HHHcCCCHHHHHHHHHHH
Q 023866 146 GTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEAL-ADG---GVAAGLPRELALGLASQT 216 (276)
Q Consensus 146 ~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l-~~~---~~~~Gl~~~~a~~~~~~~ 216 (276)
+.++++.++.+.++|+.+|+. ++++. +.+.+++ ..+..++ .|+ +.+.|++.++..+++..+
T Consensus 155 ~~t~~e~~~~~~~~~~~lG~~~v~~~k-~~~gfi~---------nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g 220 (495)
T PRK07531 155 GKTSPETIRRAKEILREIGMKPVHIAK-EIDAFVG---------DRLLEALWREALWLVKDGIATTEEIDDVIRYS 220 (495)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEeecC-CCcchhH---------HHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhc
Confidence 788899999999999999987 66643 3333322 1223332 333 346778888888877755
No 41
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.80 E-value=2.8e-17 Score=141.97 Aligned_cols=155 Identities=18% Similarity=0.159 Sum_probs=119.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH-----------HHHcC-------------ceecc
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-----------FESIG-------------VKVLS 63 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~-----------l~~~g-------------~~~~~ 63 (276)
|+++||+|||+|.||.+++..|.++|+ +|+++ |+++++++. +.+.| +..++
T Consensus 1 ~~~~kI~VIG~G~mG~~ia~~la~~g~----~V~~~-d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~ 75 (282)
T PRK05808 1 MGIQKIGVIGAGTMGNGIAQVCAVAGY----DVVMV-DISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTT 75 (282)
T ss_pred CCccEEEEEccCHHHHHHHHHHHHCCC----ceEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC
Confidence 456789999999999999999999999 99999 999988742 33333 33344
Q ss_pred CchhhhcCCCEEEEeeCcccH--HHHHHHHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcce
Q 023866 64 DNNAVVEYSDVVVFSVKPQVD--KAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAAT 140 (276)
Q Consensus 64 ~~~~~~~~aDvI~lav~~~~~--~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~ 140 (276)
+.. .+++||+||+|+|++.. .+++.++.. .++++..+.+..+|+ +++.+++.++ ..+++++||+.|..+..++.
T Consensus 76 ~~~-~~~~aDlVi~av~e~~~~k~~~~~~l~~-~~~~~~il~s~ts~~-~~~~la~~~~~~~r~ig~h~~~P~~~~~~ve 152 (282)
T PRK05808 76 DLD-DLKDADLVIEAATENMDLKKKIFAQLDE-IAKPEAILATNTSSL-SITELAAATKRPDKVIGMHFFNPVPVMKLVE 152 (282)
T ss_pred CHH-HhccCCeeeecccccHHHHHHHHHHHHh-hCCCCcEEEECCCCC-CHHHHHHhhCCCcceEEeeccCCcccCccEE
Confidence 544 47899999999987643 578877731 111112222555888 8899998875 35899999999999888886
Q ss_pred EeecCCCCCHHHHHHHHHHhhhcCce-EEcCC
Q 023866 141 VMSLGGTATEEDGELIGKLFGSVGKI-WRADE 171 (276)
Q Consensus 141 ~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e 171 (276)
++.+++++++..+.+.++|+.+|+. +++++
T Consensus 153 -v~~g~~t~~e~~~~~~~l~~~lGk~pv~~~d 183 (282)
T PRK05808 153 -IIRGLATSDATHEAVEALAKKIGKTPVEVKN 183 (282)
T ss_pred -EeCCCCCCHHHHHHHHHHHHHcCCeeEEecC
Confidence 6778889999999999999999986 66654
No 42
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.79 E-value=1.4e-17 Score=145.03 Aligned_cols=194 Identities=16% Similarity=0.139 Sum_probs=132.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcC---CCEEEEeeCcc-cHHH
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEY---SDVVVFSVKPQ-VDKA 86 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~---aDvI~lav~~~-~~~~ 86 (276)
|||||||+|.||.+|+++|+++|+ +|++| ||++++.+.+.+.|+..+.++.++++. +|+||+++|+. .+++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~----~v~v~-dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~ 75 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGH----EVVGY-DRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDA 75 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCC----eEEEE-ECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHH
Confidence 589999999999999999999999 99999 999999999988898888888888775 69999999987 7888
Q ss_pred HHHHHhhccccccCCcccCCCCcc-cHHHHHHHcC--CCcEEEEecCc--cccccCcceEeecCCCCCHHHHHHHHHHhh
Q 023866 87 AVITEEAFGFCCCRSEIERPSGLQ-RWSRWVEWTG--HSRFIRVMPNT--PSAVGEAATVMSLGGTATEEDGELIGKLFG 161 (276)
Q Consensus 87 vl~~~~~~~~~~~~~~l~~~~g~~-~~~~l~~~l~--~~~vv~~~p~~--~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~ 161 (276)
++..+.. .+.++.-++...++.. ....+.+.+. +..++. .|.. +.....|.+.+..+ +++.+++++++|+
T Consensus 76 v~~~l~~-~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~d-apvsG~~~~a~~g~~~~~gG---~~~~~~~~~~~l~ 150 (301)
T PRK09599 76 TIDELAP-LLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVD-VGTSGGVWGLERGYCLMIGG---DKEAVERLEPIFK 150 (301)
T ss_pred HHHHHHh-hCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEe-CCCCcCHHHHhcCCeEEecC---CHHHHHHHHHHHH
Confidence 8877621 1111122232212220 1223433332 344554 3332 22223455545543 7899999999999
Q ss_pred hcCc----e-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHH--cCCCHHHHHHHHHHH
Q 023866 162 SVGK----I-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVA--AGLPRELALGLASQT 216 (276)
Q Consensus 162 ~~G~----~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~--~Gl~~~~a~~~~~~~ 216 (276)
.+|. . +++++..-...+.+. .+.+++..+.++.|+ +.+ .|+|.+...+++..+
T Consensus 151 ~~~~~~~~~~~~~G~~G~g~~~Kl~--~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~ 213 (301)
T PRK09599 151 ALAPRAEDGYLHAGPVGAGHFVKMV--HNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRG 213 (301)
T ss_pred HHcccccCCeEeECCCcHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCC
Confidence 9997 4 788874322222222 234555666677776 346 999999999998865
No 43
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.79 E-value=2.3e-18 Score=146.57 Aligned_cols=220 Identities=18% Similarity=0.156 Sum_probs=156.1
Q ss_pred HHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-cCchhhhcCCCEEEEeeCcccHHHHHHHHhhccccccCCcc
Q 023866 25 IAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDNNAVVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEI 103 (276)
Q Consensus 25 la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~~~~~~~~aDvI~lav~~~~~~~vl~~~~~~~~~~~~~~l 103 (276)
+|++|.++|+ ..+|+.| |++++..+...+.|+.-. .+..+.+.++|+||+|||+..+.+++.++ .+++
T Consensus 1 ~A~aL~~~g~--~~~v~g~-d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~~~~~~l~~~--------~~~~ 69 (258)
T PF02153_consen 1 IALALRKAGP--DVEVYGY-DRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVSAIEDVLEEI--------APYL 69 (258)
T ss_dssp HHHHHHHTTT--TSEEEEE--SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HHHHHHHHHHH--------HCGS
T ss_pred ChHHHHhCCC--CeEEEEE-eCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHHHHHHHHHHh--------hhhc
Confidence 5788899983 2288899 999999988878886422 22257789999999999999999999999 5555
Q ss_pred cCC------CCccc---HHHHHHHcC-CCcEEEEecCccccc----------cCc-ceEeecCCCCCHHHHHHHHHHhhh
Q 023866 104 ERP------SGLQR---WSRWVEWTG-HSRFIRVMPNTPSAV----------GEA-ATVMSLGGTATEEDGELIGKLFGS 162 (276)
Q Consensus 104 ~~~------~g~~~---~~~l~~~l~-~~~vv~~~p~~~~~~----------~~g-~~~i~~~~~~~~~~~~~v~~ll~~ 162 (276)
..+ +++ . .+.+++.++ +.+++..||....+. -+| ..++++....+++.++.++++++.
T Consensus 70 ~~~~iv~Dv~Sv-K~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~ 148 (258)
T PF02153_consen 70 KPGAIVTDVGSV-KAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEA 148 (258)
T ss_dssp -TTSEEEE--S--CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCC-CHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHH
Confidence 443 333 2 356667777 678999999754411 123 345677766677899999999999
Q ss_pred cCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCC
Q 023866 163 VGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASP 241 (276)
Q Consensus 163 ~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp 241 (276)
+|.. ++++.++||.++|.+++.|++++. +++....+.+.+.+....+..++|+.++++.. .+|..|.+...++
T Consensus 149 ~Ga~~~~~~~eeHD~~~A~vshlpH~~a~---al~~~~~~~~~~~~~~~~~a~~~frd~tRia~---~~p~l~~~I~~~N 222 (258)
T PF02153_consen 149 LGARVVEMDAEEHDRIMAYVSHLPHLLAS---ALANTLAELSSDDPDILRLAGGGFRDMTRIAS---SDPELWADIFLSN 222 (258)
T ss_dssp CT-EEEE--HHHHHHHHHHHTHHHHHHHH---HHHHHHHHHHHHHHHHHHHGTHHHHHHHGGGG---S-HHHHHHHHHHT
T ss_pred CCCEEEEcCHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCChHHHHhhcchhHHhhccccc---CChHHHHHHHHHC
Confidence 9964 889999999999999999998765 33333333333456678889999999888765 6899999998888
Q ss_pred CchHHHHHHHHHhC--ChHHHHH
Q 023866 242 GGTTIAGIHELEKS--GFRGILM 262 (276)
Q Consensus 242 ~g~t~~~l~~l~~~--~~~~~~~ 262 (276)
.....+.++.+.+. .++..+.
T Consensus 223 ~~~~~~~l~~~~~~L~~l~~~l~ 245 (258)
T PF02153_consen 223 PENLLEALDEFIKELNELREALE 245 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888887664 4444444
No 44
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.78 E-value=1.2e-16 Score=138.97 Aligned_cols=196 Identities=13% Similarity=0.053 Sum_probs=129.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhh---cCCCEEEEeeCcccHHHH
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVV---EYSDVVVFSVKPQVDKAA 87 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~---~~aDvI~lav~~~~~~~v 87 (276)
|||||||+|+||.+|+.+|.++|+ +|.+| ||++++.+.+.+.|+....+..+++ ..+|+||+|||+..++++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~----~V~~~-dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v 75 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGH----DCVGY-DHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAV 75 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHH
Confidence 589999999999999999999999 99999 9999999999888776656655543 568999999999999999
Q ss_pred HHHHhhccccccCCcccCCCCc-ccHHHHHHHcC--CCcEEEEecC-ccccccCcceEeecCCCCCHHHHHHHHHHhhhc
Q 023866 88 VITEEAFGFCCCRSEIERPSGL-QRWSRWVEWTG--HSRFIRVMPN-TPSAVGEAATVMSLGGTATEEDGELIGKLFGSV 163 (276)
Q Consensus 88 l~~~~~~~~~~~~~~l~~~~g~-~~~~~l~~~l~--~~~vv~~~p~-~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~ 163 (276)
+.++.. .+.++..++...++. .....+.+.+. +.+++.+... .+.....|.+.+..+ +++.++.++++|+.+
T Consensus 76 ~~~l~~-~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG---~~~~~~~~~~~l~~~ 151 (298)
T TIGR00872 76 LEELAP-TLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGG---DGEAFARAEPLFADV 151 (298)
T ss_pred HHHHHh-hCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCC---CHHHHHHHHHHHHHh
Confidence 988721 111112222222222 01222222222 3455554221 122223455544443 789999999999999
Q ss_pred Cc----eEEcCCCCchhhhhhcCchHHHHHHHHHHHHHHH---HHc--CCCHHHHHHHHHHHH
Q 023866 164 GK----IWRADEKLFDAITGLSGSGPAYIFLAIEALADGG---VAA--GLPRELALGLASQTV 217 (276)
Q Consensus 164 G~----~~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~---~~~--Gl~~~~a~~~~~~~~ 217 (276)
+. .+++++..-.....+. .+++.+..+.++.|+. .+. |+|.++..+++..+.
T Consensus 152 ~~~~~~~~~~G~~G~~~~~K~~--~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~ 212 (298)
T TIGR00872 152 APEEQGYLYCGPCGSGHFVKMV--HNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGS 212 (298)
T ss_pred cCcCCCEEEECCccHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCc
Confidence 95 4777774333333322 2445566667777763 355 569999888877653
No 45
>PLN02858 fructose-bisphosphate aldolase
Probab=99.78 E-value=4.2e-17 Score=164.96 Aligned_cols=248 Identities=15% Similarity=0.115 Sum_probs=165.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeC-cccHHHHH
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVDKAAV 88 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~-~~~~~~vl 88 (276)
.++|||||+|+||.+|+.+|+++|+ +|++| ||++++.+.+.+.|.....++.+++++||+||+||| |+++++|+
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~----~V~v~-dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl 398 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNF----SVCGY-DVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVL 398 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHH
Confidence 4789999999999999999999999 99999 999999999988888777888899999999999999 67888887
Q ss_pred HH---HhhccccccCCcccCCCCcccHH---HHHHHcC----CCcEEEEe-cCccccccCcc-eEeecCCCCCHHHHHHH
Q 023866 89 IT---EEAFGFCCCRSEIERPSGLQRWS---RWVEWTG----HSRFIRVM-PNTPSAVGEAA-TVMSLGGTATEEDGELI 156 (276)
Q Consensus 89 ~~---~~~~~~~~~~~~l~~~~g~~~~~---~l~~~l~----~~~vv~~~-p~~~~~~~~g~-~~i~~~~~~~~~~~~~v 156 (276)
.. +. .++.++..++.. +++ +++ ++.+.+. +..++.+- ...|.....|. +.++.| +++.++++
T Consensus 399 ~g~~g~~-~~l~~g~ivVd~-STv-sP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG---~~~~~~~~ 472 (1378)
T PLN02858 399 FGDLGAV-SALPAGASIVLS-STV-SPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASG---TDEALKSA 472 (1378)
T ss_pred hchhhHH-hcCCCCCEEEEC-CCC-CHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEEC---CHHHHHHH
Confidence 43 21 011111222222 444 443 3444332 23344321 11222233443 445544 78899999
Q ss_pred HHHhhhcCce-EEc-CCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 023866 157 GKLFGSVGKI-WRA-DEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHP 231 (276)
Q Consensus 157 ~~ll~~~G~~-~~~-~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~ 231 (276)
+++|+.+|.. +++ ++-.-...+.+. .+.+.+..+.++.|+ +.+.|+|++..++++..+...+..+ .. ..|
T Consensus 473 ~plL~~lg~~i~~~~g~~G~a~~~KL~--nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~-~~--~~~ 547 (1378)
T PLN02858 473 GSVLSALSEKLYVIKGGCGAGSGVKMV--NQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMF-EN--RVP 547 (1378)
T ss_pred HHHHHHHhCcEEEeCCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhh-hh--ccc
Confidence 9999999965 554 433222233332 233444456666665 4689999999999998876554433 21 234
Q ss_pred HHHHHhcCCCCchHHHHHHHH-------HhCChHHHHHHHHHHHHHHHhh
Q 023866 232 GQLKDDVASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSRE 274 (276)
Q Consensus 232 ~~l~~~v~sp~g~t~~~l~~l-------~~~~~~~~~~~a~~~~~~r~~~ 274 (276)
..+ +.-++|+++.....+++ ++.|+.-.+.++..+.|+++.+
T Consensus 548 ~~l-~~d~~~~f~l~l~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~ 596 (1378)
T PLN02858 548 HML-DNDYTPYSALDIFVKDLGIVSREGSSRKIPLHLSTVAHQLFLAGSA 596 (1378)
T ss_pred hhh-cCCCCCCchhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHh
Confidence 444 44457888877776654 4557887888888888877654
No 46
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.77 E-value=6.5e-19 Score=155.34 Aligned_cols=193 Identities=16% Similarity=0.126 Sum_probs=132.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc--------C------ceeccCchhhhcCCCE
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------G------VKVLSDNNAVVEYSDV 74 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--------g------~~~~~~~~~~~~~aDv 74 (276)
++|||+|||+|.||++|+..|.++|+ +|++| +|++++.+.+.+. | +..+.++.++++++|+
T Consensus 3 ~~m~I~iIG~G~mG~~ia~~L~~~G~----~V~~~-~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~ 77 (328)
T PRK14618 3 HGMRVAVLGAGAWGTALAVLAASKGV----PVRLW-ARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADF 77 (328)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCE
Confidence 56899999999999999999999999 99999 9999988877753 3 3345677788899999
Q ss_pred EEEeeCcccHHHHHHHHhhccccccCCcccCCCCccc-----HHHHHHHcCC---C-cEEEEecCccccccCcce--Eee
Q 023866 75 VVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQR-----WSRWVEWTGH---S-RFIRVMPNTPSAVGEAAT--VMS 143 (276)
Q Consensus 75 I~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~-----~~~l~~~l~~---~-~vv~~~p~~~~~~~~g~~--~i~ 143 (276)
||+|||+++++++++.+. +...+++..+|+ . ...+.+.++. . ..+...|+.+..++.+.. .+.
T Consensus 78 Vi~~v~~~~~~~v~~~l~-----~~~~vi~~~~Gi-~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~ 151 (328)
T PRK14618 78 AVVAVPSKALRETLAGLP-----RALGYVSCAKGL-APDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVV 151 (328)
T ss_pred EEEECchHHHHHHHHhcC-----cCCEEEEEeecc-ccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEE
Confidence 999999999999987762 112344444665 3 3455555432 2 235667888887765542 222
Q ss_pred cCCCCCHHHHHHHHHHhhhcCceEEcCCCCchhhh--------hh-cCch-------HHHHHHHHHHHHHH---HHHcCC
Q 023866 144 LGGTATEEDGELIGKLFGSVGKIWRADEKLFDAIT--------GL-SGSG-------PAYIFLAIEALADG---GVAAGL 204 (276)
Q Consensus 144 ~~~~~~~~~~~~v~~ll~~~G~~~~~~e~~~~~~~--------a~-~g~~-------p~~~~~~~~~l~~~---~~~~Gl 204 (276)
.+ .+++..+.++++|+..|..++.+++..-... ++ .|.+ +...+.+..++.|. +.+.|+
T Consensus 152 ~~--~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~ 229 (328)
T PRK14618 152 AS--PEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGA 229 (328)
T ss_pred Ee--CCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCC
Confidence 22 4788899999999999977665544322111 11 1211 11233445555554 568999
Q ss_pred CHHHHHHHHH
Q 023866 205 PRELALGLAS 214 (276)
Q Consensus 205 ~~~~a~~~~~ 214 (276)
++++++++..
T Consensus 230 ~~~~~~~~~~ 239 (328)
T PRK14618 230 EEATFYGLSG 239 (328)
T ss_pred CccchhcCcc
Confidence 9999988754
No 47
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.76 E-value=3.7e-16 Score=142.66 Aligned_cols=192 Identities=11% Similarity=0.104 Sum_probs=127.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc----C--ceeccCchhhhc---CCCEEEEeeC
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI----G--VKVLSDNNAVVE---YSDVVVFSVK 80 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~----g--~~~~~~~~~~~~---~aDvI~lav~ 80 (276)
+.+|||||+|+||++||.+|.++|| +|++| ||++++.+.+.+. | +..+.++.++++ ++|+||++|+
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~G~----~V~v~-dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~ 75 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASRGF----KISVY-NRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIK 75 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeC
Confidence 3589999999999999999999999 99999 9999999888763 5 345678888876 4899999986
Q ss_pred cc-cHHHHHHHHhhccccccCCcccCCCCcccH--HHHHHHcC--CCcEEEEecC--ccccccCcceEeecCCCCCHHHH
Q 023866 81 PQ-VDKAAVITEEAFGFCCCRSEIERPSGLQRW--SRWVEWTG--HSRFIRVMPN--TPSAVGEAATVMSLGGTATEEDG 153 (276)
Q Consensus 81 ~~-~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~--~~l~~~l~--~~~vv~~~p~--~~~~~~~g~~~i~~~~~~~~~~~ 153 (276)
|. .+++++.++. ..+.++..++...++. .. ....+.+. +.+++.+ |- .+.....|.+.++.| +++++
T Consensus 76 ~~~~v~~vi~~l~-~~L~~g~iIID~gn~~-~~dt~~r~~~l~~~Gi~flda-pVSGG~~gA~~G~~lm~GG---~~~a~ 149 (470)
T PTZ00142 76 AGEAVDETIDNLL-PLLEKGDIIIDGGNEW-YLNTERRIKRCEEKGILYLGM-GVSGGEEGARYGPSLMPGG---NKEAY 149 (470)
T ss_pred ChHHHHHHHHHHH-hhCCCCCEEEECCCCC-HHHHHHHHHHHHHcCCeEEcC-CCCCCHHHHhcCCEEEEeC---CHHHH
Confidence 55 7889998872 1111111122222333 22 22222221 3445543 21 122223466655554 78999
Q ss_pred HHHHHHhhhcC-c------eEEcCCCCchhhhhhcCchHHHHHHHHHHHHHHH---H-HcCCCHHHHHHHHH
Q 023866 154 ELIGKLFGSVG-K------IWRADEKLFDAITGLSGSGPAYIFLAIEALADGG---V-AAGLPRELALGLAS 214 (276)
Q Consensus 154 ~~v~~ll~~~G-~------~~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~---~-~~Gl~~~~a~~~~~ 214 (276)
++++++|+.++ + +.++++.---.+..+.. +.+.+..++++.|+. . +.|++.++..+++.
T Consensus 150 ~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvh--N~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~ 219 (470)
T PTZ00142 150 DHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVH--NGIEYGDMQLISESYKLMKHILGMSNEELSEVFN 219 (470)
T ss_pred HHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHh--HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 99999999999 4 36788753333333331 334566777787773 3 58999998888773
No 48
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.75 E-value=3.7e-16 Score=136.52 Aligned_cols=216 Identities=15% Similarity=0.075 Sum_probs=144.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHH-----------HHcC-------------ceeccCch
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-----------ESIG-------------VKVLSDNN 66 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l-----------~~~g-------------~~~~~~~~ 66 (276)
++|+|||+|.||.+|+..|.++|+ +|++| ||++++.+.. .+.| +..+.+..
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~----~V~v~-d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~ 77 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH----EVRLW-DADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLA 77 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC----eeEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHH
Confidence 689999999999999999999999 99999 9999876653 2334 25666777
Q ss_pred hhhcCCCEEEEeeCcc--cHHHHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcCC-CcEEEEecCccccccCcceEe
Q 023866 67 AVVEYSDVVVFSVKPQ--VDKAAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTGH-SRFIRVMPNTPSAVGEAATVM 142 (276)
Q Consensus 67 ~~~~~aDvI~lav~~~--~~~~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~~-~~vv~~~p~~~~~~~~g~~~i 142 (276)
+++++||+||.|+|.+ ....++.++.. ..++..++ +..++. ....+++.+.+ .+++..||..|..... ...+
T Consensus 78 ~a~~~ad~Vi~avpe~~~~k~~~~~~l~~--~~~~~~ii~ssts~~-~~~~la~~~~~~~~~~~~hp~~p~~~~~-lvei 153 (308)
T PRK06129 78 DAVADADYVQESAPENLELKRALFAELDA--LAPPHAILASSTSAL-LASAFTEHLAGRERCLVAHPINPPYLIP-VVEV 153 (308)
T ss_pred HhhCCCCEEEECCcCCHHHHHHHHHHHHH--hCCCcceEEEeCCCC-CHHHHHHhcCCcccEEEEecCCCcccCc-eEEE
Confidence 8889999999999875 34455555521 11112223 223555 66778887753 4677888877654332 3446
Q ss_pred ecCCCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHH
Q 023866 143 SLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVL 218 (276)
Q Consensus 143 ~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~ 218 (276)
+++..++++.++.+.++++.+|+. ++++++....+. +-+ +...+.|+ +.+.|+++++..+++..++.
T Consensus 154 v~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~i~------nrl---~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g 224 (308)
T PRK06129 154 VPAPWTAPATLARAEALYRAAGQSPVRLRREIDGFVL------NRL---QGALLREAFRLVADGVASVDDIDAVIRDGLG 224 (308)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccHHH------HHH---HHHHHHHHHHHHHcCCCCHHHHHHHHHhccC
Confidence 777778999999999999999975 778654332211 111 12233343 35677999999888876554
Q ss_pred HHHHHHHhcCCChHHHHHhcCCCCchHHHHHH
Q 023866 219 GAASMVTKSGKHPGQLKDDVASPGGTTIAGIH 250 (276)
Q Consensus 219 g~~~~~~~~~~~~~~l~~~v~sp~g~t~~~l~ 250 (276)
.+..+ ..|.++.+.+ +|+|......+
T Consensus 225 ~~~~~-----~gp~~~~d~~-~~~g~~~~~~k 250 (308)
T PRK06129 225 LRWSF-----MGPFETIDLN-APGGVADYAQR 250 (308)
T ss_pred CCccC-----cCHHHHHhcc-ccccHHHHHHH
Confidence 33222 2577777764 67776544433
No 49
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.74 E-value=3.6e-16 Score=137.47 Aligned_cols=206 Identities=19% Similarity=0.131 Sum_probs=137.0
Q ss_pred CeEEEEcccHH--------------------HHHHHHHHHhCCCCCCCeEEEEeCCCHH-----HHHHHHHcCceeccCc
Q 023866 11 FILGFIGAGKM--------------------AESIAKGVAKSGVLPPDRICTAVHSNLK-----RRDAFESIGVKVLSDN 65 (276)
Q Consensus 11 ~kIgiIG~G~m--------------------G~~la~~l~~~g~~~~~~V~v~~~r~~~-----~~~~l~~~g~~~~~~~ 65 (276)
|||.+.|+||- |.+||..|.++|| +|++| ||+++ +.+.+.+.|+.++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~----~V~v~-Dr~~~~l~~~~~~~l~~~Gi~~asd~ 75 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGH----DVVLA-EPNRSILSEELWKKVEDAGVKVVSDD 75 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCC----eEEEE-ECCHHHhhHHHHHHHHHCCCEEeCCH
Confidence 68899999873 8899999999999 99999 99987 4555666898888888
Q ss_pred hhhhcCCCEEEEeeCccc-HHHHHHHHhhccccccCCcccCCCCcccH----HHHHHHcCC-CcEEEEecCccccc----
Q 023866 66 NAVVEYSDVVVFSVKPQV-DKAAVITEEAFGFCCCRSEIERPSGLQRW----SRWVEWTGH-SRFIRVMPNTPSAV---- 135 (276)
Q Consensus 66 ~~~~~~aDvI~lav~~~~-~~~vl~~~~~~~~~~~~~~l~~~~g~~~~----~~l~~~l~~-~~vv~~~p~~~~~~---- 135 (276)
.+++++||+||+|+|++. +++++.++.. .+.++..+++ .+++ +. +.+++.++. .+.+++++++|..+
T Consensus 76 ~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~-~L~~g~IVId-~ST~-~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae 152 (342)
T PRK12557 76 AEAAKHGEIHILFTPFGKKTVEIAKNILP-HLPENAVICN-TCTV-SPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTP 152 (342)
T ss_pred HHHHhCCCEEEEECCCcHHHHHHHHHHHh-hCCCCCEEEE-ecCC-CHHHHHHHHHHHhcccccccCeeecCCccccccc
Confidence 888999999999999887 8899887721 1111111222 2333 33 345555542 23456666655543
Q ss_pred cCcceEeecC-----CCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHH-HHHHHHHHHHHH---HHHcCCC
Q 023866 136 GEAATVMSLG-----GTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPA-YIFLAIEALADG---GVAAGLP 205 (276)
Q Consensus 136 ~~g~~~i~~~-----~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~-~~~~~~~~l~~~---~~~~Gl~ 205 (276)
..+.++++.+ ...+++.+++++++|+++|.. ++.+++..+. ....++ +.+....++.++ +.+.|.+
T Consensus 153 ~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~~g~~~~----vk~~~n~l~av~~a~~aE~~~l~~~~~~~ 228 (342)
T PRK12557 153 QHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVPADVVSA----VADMGSLVTAVALSGVLDYYSVGTKIIKA 228 (342)
T ss_pred cchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 2334455422 234788999999999999975 6777643333 111122 222233334433 2355555
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhcC
Q 023866 206 -RELALGLASQTVLGAASMVTKSG 228 (276)
Q Consensus 206 -~~~a~~~~~~~~~g~~~~~~~~~ 228 (276)
.+.+.+++.+++.|+++++.+++
T Consensus 229 p~~~~~~~~~~~~~~~a~l~~~~~ 252 (342)
T PRK12557 229 PKEMIEKQILMTLQTMASLVETSG 252 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56788899999999999998765
No 50
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.74 E-value=3.8e-16 Score=135.78 Aligned_cols=155 Identities=17% Similarity=0.162 Sum_probs=115.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH-----------HHHcC------------ceeccC
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-----------FESIG------------VKVLSD 64 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~-----------l~~~g------------~~~~~~ 64 (276)
++.+||+|||+|.||.+||..|+++|+ +|++| |+++++++. +.+.| .....+
T Consensus 2 ~~~~~V~vIG~G~mG~~iA~~l~~~G~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 76 (295)
T PLN02545 2 AEIKKVGVVGAGQMGSGIAQLAAAAGM----DVWLL-DSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTT 76 (295)
T ss_pred CCcCEEEEECCCHHHHHHHHHHHhcCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeC
Confidence 345789999999999999999999999 99999 999988653 22222 122334
Q ss_pred chhhhcCCCEEEEeeC--cccHHHHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcCC-CcEEEEecCccccccCcce
Q 023866 65 NNAVVEYSDVVVFSVK--PQVDKAAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTGH-SRFIRVMPNTPSAVGEAAT 140 (276)
Q Consensus 65 ~~~~~~~aDvI~lav~--~~~~~~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~~-~~vv~~~p~~~~~~~~g~~ 140 (276)
..+.+++||+||+||+ ++....++.++.. ...+ ..++ +..+++ ++.++++.+.. .+++++|+..|...+.. +
T Consensus 77 ~~~~~~~aD~Vieav~e~~~~k~~v~~~l~~-~~~~-~~il~s~tS~i-~~~~l~~~~~~~~r~~g~h~~~pp~~~~l-v 152 (295)
T PLN02545 77 NLEELRDADFIIEAIVESEDLKKKLFSELDR-ICKP-SAILASNTSSI-SITRLASATQRPQQVIGMHFMNPPPIMKL-V 152 (295)
T ss_pred CHHHhCCCCEEEEcCccCHHHHHHHHHHHHh-hCCC-CcEEEECCCCC-CHHHHHhhcCCCcceEEEeccCCcccCce-E
Confidence 4567899999999998 6666677776631 1111 2234 455888 89999988763 68899988877766544 4
Q ss_pred EeecCCCCCHHHHHHHHHHhhhcCce-EEcCC
Q 023866 141 VMSLGGTATEEDGELIGKLFGSVGKI-WRADE 171 (276)
Q Consensus 141 ~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e 171 (276)
.++.++.++++.++.+.++|+.+|+. +++.+
T Consensus 153 eiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d 184 (295)
T PLN02545 153 EIIRGADTSDEVFDATKALAERFGKTVVCSQD 184 (295)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCeeEEecC
Confidence 46677788999999999999999986 55554
No 51
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.73 E-value=4.4e-16 Score=137.12 Aligned_cols=195 Identities=18% Similarity=0.158 Sum_probs=127.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc--------------CceeccCchhhhcCCCEE
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------------GVKVLSDNNAVVEYSDVV 75 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--------------g~~~~~~~~~~~~~aDvI 75 (276)
||||+|||+|.||++|+..|.++|+ +|++| +|++++.+.+.+. ++....+..++++++|+|
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 75 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGH----DVTLW-ARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLI 75 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEE
Confidence 4799999999999999999999999 99999 9999998888764 344556667788899999
Q ss_pred EEeeCcccHHHHHHHHhhccccccCCcccCCCCcccH-------HHHHHHcCC--CcEEEEecCccccccCcc--eEeec
Q 023866 76 VFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRW-------SRWVEWTGH--SRFIRVMPNTPSAVGEAA--TVMSL 144 (276)
Q Consensus 76 ~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~-------~~l~~~l~~--~~vv~~~p~~~~~~~~g~--~~i~~ 144 (276)
|+|||++++++++.++.. .+.++..+++..+|+ +. +.+++.++. ...+...|+.+...+.+. ..+..
T Consensus 76 i~~v~~~~~~~v~~~l~~-~~~~~~~vi~~~ngv-~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~ 153 (325)
T PRK00094 76 LVAVPSQALREVLKQLKP-LLPPDAPIVWATKGI-EPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIA 153 (325)
T ss_pred EEeCCHHHHHHHHHHHHh-hcCCCCEEEEEeecc-cCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEE
Confidence 999999999999988731 111112223332566 32 445555553 234455677765544442 22222
Q ss_pred CCCCCHHHHHHHHHHhhhcCceEEcCCCCch---------hhhhhcCc-------hHHHHHHHHHHHHHH---HHHcCCC
Q 023866 145 GGTATEEDGELIGKLFGSVGKIWRADEKLFD---------AITGLSGS-------GPAYIFLAIEALADG---GVAAGLP 205 (276)
Q Consensus 145 ~~~~~~~~~~~v~~ll~~~G~~~~~~e~~~~---------~~~a~~g~-------~p~~~~~~~~~l~~~---~~~~Gl~ 205 (276)
+ .+++.++.+.++|+..|..+...++... .+...+|. .+.....+..++.|. +.+.|++
T Consensus 154 ~--~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d 231 (325)
T PRK00094 154 S--TDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGAN 231 (325)
T ss_pred e--CCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCC
Confidence 2 3688899999999999965444333211 00000111 122334445555554 5689999
Q ss_pred HHHHHHHH
Q 023866 206 RELALGLA 213 (276)
Q Consensus 206 ~~~a~~~~ 213 (276)
++...++.
T Consensus 232 ~~~~~~~~ 239 (325)
T PRK00094 232 PETFLGLA 239 (325)
T ss_pred hhhhhccc
Confidence 99887754
No 52
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.73 E-value=9.4e-17 Score=133.56 Aligned_cols=151 Identities=20% Similarity=0.263 Sum_probs=111.9
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc--------Cc--e-eccCchhhhcCCCEEEEe
Q 023866 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------GV--K-VLSDNNAVVEYSDVVVFS 78 (276)
Q Consensus 11 ~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--------g~--~-~~~~~~~~~~~aDvI~la 78 (276)
|||+||| +|+||++|+..|.++|+ +|+++ +|++++.+.+.+. |+ . ...+..++++++|+||+|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~----~V~v~-~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVila 75 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN----KIIIG-SRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILA 75 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC----EEEEE-EcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEE
Confidence 6899997 89999999999999998 99999 9999988776541 22 1 123566778999999999
Q ss_pred eCcccHHHHHHHHhhccccccCCcccCCCCcccH-----------------HHHHHHcCC-CcEEEEecCccccccCc--
Q 023866 79 VKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRW-----------------SRWVEWTGH-SRFIRVMPNTPSAVGEA-- 138 (276)
Q Consensus 79 v~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~-----------------~~l~~~l~~-~~vv~~~p~~~~~~~~g-- 138 (276)
||++.+.+++.++.. -+. ++.+++..+|+ +. +.+++++|. .++++++||.+.....+
T Consensus 76 vp~~~~~~~l~~l~~-~l~-~~vvI~~~ngi-~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a~~~~~~~ 152 (219)
T TIGR01915 76 VPWDHVLKTLESLRD-ELS-GKLVISPVVPL-ASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSAVLLQDVD 152 (219)
T ss_pred CCHHHHHHHHHHHHH-hcc-CCEEEEeccCc-eecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCHHHhcCCC
Confidence 999999999887731 011 12233433555 33 668888986 89999999988764322
Q ss_pred ----ceEeecCCCCCHHHHHHHHHHhhhc-Cce-EEcCC
Q 023866 139 ----ATVMSLGGTATEEDGELIGKLFGSV-GKI-WRADE 171 (276)
Q Consensus 139 ----~~~i~~~~~~~~~~~~~v~~ll~~~-G~~-~~~~e 171 (276)
...+++++ ++++.+.+..+.+.+ |.. +..+.
T Consensus 153 ~~~~~~~~v~Gd--d~~ak~~v~~L~~~~~G~~~vd~G~ 189 (219)
T TIGR01915 153 DEVDCDVLVCGD--DEEAKEVVAELAGRIDGLRALDAGP 189 (219)
T ss_pred CCCCCCEEEECC--CHHHHHHHHHHHHhcCCCCcccCCc
Confidence 33445554 677899999999999 865 65654
No 53
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.72 E-value=1.9e-15 Score=138.05 Aligned_cols=190 Identities=13% Similarity=0.071 Sum_probs=125.1
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc-----CceeccCchhhh---cCCCEEEEeeCc-c
Q 023866 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-----GVKVLSDNNAVV---EYSDVVVFSVKP-Q 82 (276)
Q Consensus 12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-----g~~~~~~~~~~~---~~aDvI~lav~~-~ 82 (276)
+|||||+|+||.+|+++|+++|+ +|++| ||++++.+.+.+. ++..+.+..+++ +++|+||++||+ +
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~----~V~v~-drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~ 75 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF----TVSVY-NRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGA 75 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC----eEEEE-eCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcH
Confidence 48999999999999999999999 99999 9999999998864 255566777766 468999999998 5
Q ss_pred cHHHHHHHHhhccccccCCcccCCCCcccH--HHHHHHcC--CCcEEEEecC-ccccccCcceEeecCCCCCHHHHHHHH
Q 023866 83 VDKAAVITEEAFGFCCCRSEIERPSGLQRW--SRWVEWTG--HSRFIRVMPN-TPSAVGEAATVMSLGGTATEEDGELIG 157 (276)
Q Consensus 83 ~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~--~~l~~~l~--~~~vv~~~p~-~~~~~~~g~~~i~~~~~~~~~~~~~v~ 157 (276)
.+.+++.++.. .+.++..++...++. .. ....+.+. +.+++.+... .+.....|.++++. .+++.++.++
T Consensus 76 ~v~~Vi~~l~~-~L~~g~iIID~gns~-~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~~im~G---G~~~a~~~~~ 150 (467)
T TIGR00873 76 PVDAVINQLLP-LLEKGDIIIDGGNSH-YPDTERRYKELKAKGILFVGSGVSGGEEGARKGPSIMPG---GSAEAWPLVA 150 (467)
T ss_pred HHHHHHHHHHh-hCCCCCEEEECCCcC-HHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCCcCCCC---CCHHHHHHHH
Confidence 78899888721 111111122221222 12 12222222 3445543211 11222345554543 3789999999
Q ss_pred HHhhhcCce-------EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHH----HcCCCHHHHHHHH
Q 023866 158 KLFGSVGKI-------WRADEKLFDAITGLSGSGPAYIFLAIEALADGGV----AAGLPRELALGLA 213 (276)
Q Consensus 158 ~ll~~~G~~-------~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~----~~Gl~~~~a~~~~ 213 (276)
++|+.++.. .++++.---.+..+. .+.+.+..++++.|+.. +.|++.++..+++
T Consensus 151 p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmv--hN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~ 215 (467)
T TIGR00873 151 PIFQKIAAKVDGEPCCTWIGPDGAGHYVKMV--HNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVF 215 (467)
T ss_pred HHHHHHhhhcCCCCceEEECCcCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 999999842 578875433333333 23455667778888742 5999999888887
No 54
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.71 E-value=2.8e-15 Score=130.01 Aligned_cols=154 Identities=18% Similarity=0.204 Sum_probs=116.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH--------------cC-------------cee
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------------IG-------------VKV 61 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------------~g-------------~~~ 61 (276)
+..||+|||+|.||.+|+..|.++|+ +|++| |+++++++...+ .| +..
T Consensus 2 ~i~~I~ViGaG~mG~~iA~~la~~G~----~V~l~-d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~ 76 (291)
T PRK06035 2 DIKVIGVVGSGVMGQGIAQVFARTGY----DVTIV-DVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT 76 (291)
T ss_pred CCcEEEEECccHHHHHHHHHHHhcCC----eEEEE-eCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe
Confidence 45789999999999999999999999 99999 999988764321 12 123
Q ss_pred ccCchhhhcCCCEEEEeeCccc--HHHHHHHHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCccccccCc
Q 023866 62 LSDNNAVVEYSDVVVFSVKPQV--DKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEA 138 (276)
Q Consensus 62 ~~~~~~~~~~aDvI~lav~~~~--~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g 138 (276)
.++. +.+++||+||+|+|++. ..+++.++.. -..++..+++..+|+ ++.++++.+. ..+++++|++.|..+..+
T Consensus 77 ~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~-~~~~~~il~S~tsg~-~~~~la~~~~~~~r~ig~hf~~P~~~~~~ 153 (291)
T PRK06035 77 STSY-ESLSDADFIVEAVPEKLDLKRKVFAELER-NVSPETIIASNTSGI-MIAEIATALERKDRFIGMHWFNPAPVMKL 153 (291)
T ss_pred eCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHh-hCCCCeEEEEcCCCC-CHHHHHhhcCCcccEEEEecCCCcccCcc
Confidence 3333 56789999999998774 5677776631 111112233445888 8899988875 368999999998887777
Q ss_pred ceEeecCCCCCHHHHHHHHHHhhhcCce-EEcCC
Q 023866 139 ATVMSLGGTATEEDGELIGKLFGSVGKI-WRADE 171 (276)
Q Consensus 139 ~~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e 171 (276)
+.+ ..++.++++.++.+.++++.+|+. +++.+
T Consensus 154 vEv-~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d 186 (291)
T PRK06035 154 IEV-VRAALTSEETFNTTVELSKKIGKIPIEVAD 186 (291)
T ss_pred EEE-eCCCCCCHHHHHHHHHHHHHcCCeEEEeCC
Confidence 664 478888999999999999999986 66654
No 55
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.69 E-value=6.2e-15 Score=127.61 Aligned_cols=157 Identities=13% Similarity=0.071 Sum_probs=115.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-------------------------cCceecc
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------------IGVKVLS 63 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------------------------~g~~~~~ 63 (276)
+.+||+|||+|.||.+||..|.++|+ +|++| |+++++++.+.+ .++..++
T Consensus 2 ~~~kIaViGaG~mG~~iA~~la~~G~----~V~l~-d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 76 (287)
T PRK08293 2 DIKNVTVAGAGVLGSQIAFQTAFHGF----DVTIY-DISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTT 76 (287)
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeC
Confidence 45799999999999999999999999 99999 999887655432 1334566
Q ss_pred CchhhhcCCCEEEEeeCcc--cHHHHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcc
Q 023866 64 DNNAVVEYSDVVVFSVKPQ--VDKAAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAA 139 (276)
Q Consensus 64 ~~~~~~~~aDvI~lav~~~--~~~~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~ 139 (276)
+..+++++||+||.|+|.+ ...+++.++.. ..+...++ +..+++ ++..+.+.++ ..+++.+||..|..... .
T Consensus 77 d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~--~~~~~~ii~sntSt~-~~~~~~~~~~~~~r~vg~Hf~~p~~~~~-l 152 (287)
T PRK08293 77 DLAEAVKDADLVIEAVPEDPEIKGDFYEELAK--VAPEKTIFATNSSTL-LPSQFAEATGRPEKFLALHFANEIWKNN-T 152 (287)
T ss_pred CHHHHhcCCCEEEEeccCCHHHHHHHHHHHHh--hCCCCCEEEECcccC-CHHHHHhhcCCcccEEEEcCCCCCCcCC-e
Confidence 7777889999999999855 45677777631 11112233 344666 7778877765 35789999877765433 3
Q ss_pred eEeecCCCCCHHHHHHHHHHhhhcCce-EEcCCCCc
Q 023866 140 TVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLF 174 (276)
Q Consensus 140 ~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~ 174 (276)
.-++.++.++++.++.+.++++.+|+. +.+..+.+
T Consensus 153 vevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~p 188 (287)
T PRK08293 153 AEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQP 188 (287)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 345667788999999999999999976 67765443
No 56
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.69 E-value=4.1e-15 Score=129.09 Aligned_cols=155 Identities=19% Similarity=0.163 Sum_probs=112.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----------cC-------------ceecc
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------IG-------------VKVLS 63 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----------~g-------------~~~~~ 63 (276)
|..+||+|||+|.||.+|+..|.++|+ +|++| |+++++++.+.+ .| +...+
T Consensus 2 ~~~~kI~vIGaG~mG~~iA~~la~~G~----~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 76 (292)
T PRK07530 2 MAIKKVGVIGAGQMGNGIAHVCALAGY----DVLLN-DVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTAT 76 (292)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeC
Confidence 556899999999999999999999999 99999 999988765431 13 34445
Q ss_pred CchhhhcCCCEEEEeeCcc-c-HHHHHHHHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcce
Q 023866 64 DNNAVVEYSDVVVFSVKPQ-V-DKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAAT 140 (276)
Q Consensus 64 ~~~~~~~~aDvI~lav~~~-~-~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~ 140 (276)
+. +.+++||+||+|+|.+ + ...++.++.. .+.++..+++..+++ ++..+++.+. ..+++++|+..|.....++
T Consensus 77 ~~-~~~~~aD~Vieavpe~~~~k~~~~~~l~~-~~~~~~ii~s~ts~~-~~s~la~~~~~~~r~~g~h~~~p~~~~~~v- 152 (292)
T PRK07530 77 DL-EDLADCDLVIEAATEDETVKRKIFAQLCP-VLKPEAILATNTSSI-SITRLASATDRPERFIGIHFMNPVPVMKLV- 152 (292)
T ss_pred CH-HHhcCCCEEEEcCcCCHHHHHHHHHHHHh-hCCCCcEEEEcCCCC-CHHHHHhhcCCcccEEEeeccCCcccCceE-
Confidence 55 4578999999999864 3 4466666631 111112233455778 7788888764 3577787777666655555
Q ss_pred EeecCCCCCHHHHHHHHHHhhhcCce-EEcCC
Q 023866 141 VMSLGGTATEEDGELIGKLFGSVGKI-WRADE 171 (276)
Q Consensus 141 ~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e 171 (276)
-+..+..++++.++.+.++|+.+|+. +++.+
T Consensus 153 ei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d 184 (292)
T PRK07530 153 ELIRGIATDEATFEAAKEFVTKLGKTITVAED 184 (292)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCeEEEecC
Confidence 35667788999999999999999976 66654
No 57
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.69 E-value=7e-15 Score=128.28 Aligned_cols=245 Identities=17% Similarity=0.196 Sum_probs=146.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee-----------ccCchhhhcCCCEEEEee
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-----------LSDNNAVVEYSDVVVFSV 79 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-----------~~~~~~~~~~aDvI~lav 79 (276)
|||+|||+|.||+.++..|.++|+ +|+++ +|++++.+.+.+.|..+ ..+..++ +++|+||++|
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~----~V~~~-~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~ 74 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGH----DVTLV-ARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAV 74 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC----eEEEE-ECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEec
Confidence 689999999999999999999998 99999 99888888887766532 2334443 8899999999
Q ss_pred CcccHHHHHHHHhhccccccCCcccCCCCcccHHHHHHHcCCCcEEE---------EecCccccccCcceEeecCCCCCH
Q 023866 80 KPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIR---------VMPNTPSAVGEAATVMSLGGTATE 150 (276)
Q Consensus 80 ~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~~~~vv~---------~~p~~~~~~~~g~~~i~~~~~~~~ 150 (276)
|++++.+++..+.. .+.++..++.-.+|+...+.+.+.++...++. ..|+.....+.|...+...+. +.
T Consensus 75 k~~~~~~~~~~l~~-~l~~~~~iv~~~nG~~~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~-~~ 152 (304)
T PRK06522 75 KAYQLPAALPSLAP-LLGPDTPVLFLQNGVGHLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDG-ES 152 (304)
T ss_pred ccccHHHHHHHHhh-hcCCCCEEEEecCCCCcHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCC-Cc
Confidence 99999999998821 01111122333378834677888776444442 234444444555444432222 23
Q ss_pred HHHHHHHHHhhhcCceEEcCCC-------------CchhhhhhcCchHHHH-------HHH---HHHHHHHHHHcCCCH-
Q 023866 151 EDGELIGKLFGSVGKIWRADEK-------------LFDAITGLSGSGPAYI-------FLA---IEALADGGVAAGLPR- 206 (276)
Q Consensus 151 ~~~~~v~~ll~~~G~~~~~~e~-------------~~~~~~a~~g~~p~~~-------~~~---~~~l~~~~~~~Gl~~- 206 (276)
+..+.+.++|+..|..+...++ .++.++++.++.+..+ ..+ +.-....+.+.|++.
T Consensus 153 ~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~ 232 (304)
T PRK06522 153 AAAEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEGVHLS 232 (304)
T ss_pred HHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 4567788889888866555554 4566788877755422 112 222223345777653
Q ss_pred -HHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHH-----HHHHHhCChHHHHHHHHHHHHH
Q 023866 207 -ELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG-----IHELEKSGFRGILMNAVVAAAK 270 (276)
Q Consensus 207 -~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~~-----l~~l~~~~~~~~~~~a~~~~~~ 270 (276)
+...+.+..... .. ....+.++.|.. ..+-+-+.. ++.-++.|+.....+.+.+.++
T Consensus 233 ~~~~~~~~~~~~~----~~--~~~~sSm~~D~~-~gr~tEid~i~G~~v~~a~~~gv~~P~~~~l~~~~~ 295 (304)
T PRK06522 233 VEEVREYVRQVIQ----KT--AANTSSMLQDLE-AGRPTEIDAIVGYVLRRGRKHGIPTPLNDALYGLLK 295 (304)
T ss_pred hHHHHHHHHHHhh----cc--CCCCchHHHHHH-cCCCcccchhccHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 444333332211 11 112344555443 222222222 3444566887777777666554
No 58
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.68 E-value=9.3e-15 Score=126.60 Aligned_cols=152 Identities=20% Similarity=0.158 Sum_probs=113.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-------c-----------------CceeccCch
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------I-----------------GVKVLSDNN 66 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------~-----------------g~~~~~~~~ 66 (276)
+||+|||+|.||.+||..|.++|+ +|++| |+++++++.+.+ . +++.+.+..
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 76 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF----QTTLV-DIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLK 76 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC----cEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHH
Confidence 589999999999999999999999 99999 999998876542 1 234556777
Q ss_pred hhhcCCCEEEEeeCccc-H-HHHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcCC-CcEEEEecCccccccCcceEe
Q 023866 67 AVVEYSDVVVFSVKPQV-D-KAAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTGH-SRFIRVMPNTPSAVGEAATVM 142 (276)
Q Consensus 67 ~~~~~aDvI~lav~~~~-~-~~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~~-~~vv~~~p~~~~~~~~g~~~i 142 (276)
+++++||+||+|+|.+. + ..++.++.+ ...+ ..++ +..+++ ++..+.+.+.. .+++..|+-.|...+. ...+
T Consensus 77 ~~~~~aD~Vi~avpe~~~~k~~~~~~l~~-~~~~-~~il~~~tSt~-~~~~l~~~~~~~~r~~g~h~~~Pv~~~~-Lve~ 152 (288)
T PRK09260 77 AAVADADLVIEAVPEKLELKKAVFETADA-HAPA-ECYIATNTSTM-SPTEIASFTKRPERVIAMHFFNPVHKMK-LVEL 152 (288)
T ss_pred HhhcCCCEEEEeccCCHHHHHHHHHHHHh-hCCC-CcEEEEcCCCC-CHHHHHhhcCCcccEEEEecCCCcccCc-eEEE
Confidence 88999999999998663 3 355555521 1111 1223 444777 88888887763 4577778777775443 4456
Q ss_pred ecCCCCCHHHHHHHHHHhhhcCce-EEcCC
Q 023866 143 SLGGTATEEDGELIGKLFGSVGKI-WRADE 171 (276)
Q Consensus 143 ~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e 171 (276)
+.++.++++.++.+.++++.+|+. +++++
T Consensus 153 v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d 182 (288)
T PRK09260 153 IRGLETSDETVQVAKEVAEQMGKETVVVNE 182 (288)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeEEEecC
Confidence 777888999999999999999975 77765
No 59
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.68 E-value=1.9e-16 Score=114.51 Aligned_cols=79 Identities=28% Similarity=0.504 Sum_probs=67.4
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceecc-CchhhhcCCCEEEEeeCcccHHHHHH
Q 023866 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLS-DNNAVVEYSDVVVFSVKPQVDKAAVI 89 (276)
Q Consensus 12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~-~~~~~~~~aDvI~lav~~~~~~~vl~ 89 (276)
||||||+|+||.+|+++|.++|+ .+.+|+++++|++++.+++.+ .++.... ++.++++++|+||+||||+++.+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~-~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~~~~v~~ 79 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGI-KPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQLPEVLS 79 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS--GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGGHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-CceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHHHHHHHH
Confidence 79999999999999999999995 556999444999999999876 6776655 78999999999999999999999998
Q ss_pred HH
Q 023866 90 TE 91 (276)
Q Consensus 90 ~~ 91 (276)
++
T Consensus 80 ~i 81 (96)
T PF03807_consen 80 EI 81 (96)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 60
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.66 E-value=2.9e-14 Score=124.22 Aligned_cols=187 Identities=15% Similarity=0.108 Sum_probs=129.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----------c---------CceeccCchh
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------I---------GVKVLSDNNA 67 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----------~---------g~~~~~~~~~ 67 (276)
++.+||+|||+|.||..||..++.+|+ +|++| |++++..+.+.+ . .+...++..+
T Consensus 5 ~~i~~VaVIGaG~MG~giA~~~a~aG~----~V~l~-D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~ 79 (321)
T PRK07066 5 TDIKTFAAIGSGVIGSGWVARALAHGL----DVVAW-DPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEA 79 (321)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHH
Confidence 456799999999999999999999999 99999 999886654321 1 1245567778
Q ss_pred hhcCCCEEEEeeCcc-cHH-HHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcCC-CcEEEEecCccccccCcceEee
Q 023866 68 VVEYSDVVVFSVKPQ-VDK-AAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTGH-SRFIRVMPNTPSAVGEAATVMS 143 (276)
Q Consensus 68 ~~~~aDvI~lav~~~-~~~-~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~~-~~vv~~~p~~~~~~~~g~~~i~ 143 (276)
++++||+|+.|+|-. +++ +++.++.+ ..+...++ +..+++ ++..+++.+.+ .+++.+||-.|...-.-+. ++
T Consensus 80 av~~aDlViEavpE~l~vK~~lf~~l~~--~~~~~aIlaSnTS~l-~~s~la~~~~~p~R~~g~HffnP~~~~pLVE-Vv 155 (321)
T PRK07066 80 CVADADFIQESAPEREALKLELHERISR--AAKPDAIIASSTSGL-LPTDFYARATHPERCVVGHPFNPVYLLPLVE-VL 155 (321)
T ss_pred HhcCCCEEEECCcCCHHHHHHHHHHHHH--hCCCCeEEEECCCcc-CHHHHHHhcCCcccEEEEecCCccccCceEE-Ee
Confidence 889999999999854 454 55555521 11112233 344777 88888887763 6899999877776544344 45
Q ss_pred cCCCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHH-HHHHHHHH---HHHcC-CCHHHHHHHHH
Q 023866 144 LGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFL-AIEALADG---GVAAG-LPRELALGLAS 214 (276)
Q Consensus 144 ~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~-~~~~l~~~---~~~~G-l~~~~a~~~~~ 214 (276)
.++.++++..+.+..+++.+|+. +++..+ .|.|+.+ +..++... ....| .+.++..+++.
T Consensus 156 ~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd-----------~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~~ 221 (321)
T PRK07066 156 GGERTAPEAVDAAMGIYRALGMRPLHVRKE-----------VPGFIADRLLEALWREALHLVNEGVATTGEIDDAIR 221 (321)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEeEecCCC-----------CccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 67889999999999999999975 666422 2555432 22233222 23566 46777766644
No 61
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.62 E-value=7e-16 Score=116.11 Aligned_cols=125 Identities=16% Similarity=0.225 Sum_probs=73.6
Q ss_pred CCCCCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEee
Q 023866 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSV 79 (276)
Q Consensus 1 ~~~~~~~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav 79 (276)
|.+++.-...+||+|||+|++|..|+..|.++|| +|..+++|++++.+++.. .+.....+..++++++|+||++|
T Consensus 1 ~~~~~~~~~~l~I~iIGaGrVG~~La~aL~~ag~----~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iav 76 (127)
T PF10727_consen 1 MNTPATQAARLKIGIIGAGRVGTALARALARAGH----EVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAV 76 (127)
T ss_dssp -----------EEEEECTSCCCCHHHHHHHHTTS----EEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S
T ss_pred CCccccCCCccEEEEECCCHHHHHHHHHHHHCCC----eEEEEEeCCcccccccccccccccccccccccccCCEEEEEe
Confidence 6666666678999999999999999999999999 887655999988888876 34444456778899999999999
Q ss_pred CcccHHHHHHHHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEec
Q 023866 80 KPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMP 129 (276)
Q Consensus 80 ~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p 129 (276)
|++.+.++.+++...+......++-+.+|..+.+.|+..-. ++.+..+||
T Consensus 77 pDdaI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 77 PDDAIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp -CCHHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred chHHHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 99999999999943211111223333356535555554332 455666665
No 62
>PRK06444 prephenate dehydrogenase; Provisional
Probab=99.62 E-value=1.3e-14 Score=117.68 Aligned_cols=183 Identities=12% Similarity=0.169 Sum_probs=131.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHHHH
Q 023866 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAVI 89 (276)
Q Consensus 11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl~ 89 (276)
|||+|||. |.||+.++..|.++|+ +|+ +.+||+||+|+|+..+.+++.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~----~v~---------------------------~~~~DlVilavPv~~~~~~i~ 49 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGL----GVY---------------------------IKKADHAFLSVPIDAALNYIE 49 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCC----EEE---------------------------ECCCCEEEEeCCHHHHHHHHH
Confidence 69999998 9999999999999998 664 258999999999999999999
Q ss_pred HHhhccccccCCcccCCCCcccHHHHHHHcCCCcEEEEecCcccccc-C---cceEeecCCCCCHHHHHHHHHHhhhcCc
Q 023866 90 TEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNTPSAVG-E---AATVMSLGGTATEEDGELIGKLFGSVGK 165 (276)
Q Consensus 90 ~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~~~~vv~~~p~~~~~~~-~---g~~~i~~~~~~~~~~~~~v~~ll~~~G~ 165 (276)
++ .+.+..-.++ .. .+.+. ..+++..||....... . ...+++ .+..+++..+.++++|+ |.
T Consensus 50 ~~--------~~~v~Dv~Sv-K~-~i~~~--~~~~vg~HPMfGp~~a~~~lf~~~iv~-~~~~~~~~~~~~~~l~~--G~ 114 (197)
T PRK06444 50 SY--------DNNFVEISSV-KW-PFKKY--SGKIVSIHPLFGPMSYNDGVHRTVIFI-NDISRDNYLNEINEMFR--GY 114 (197)
T ss_pred Hh--------CCeEEecccc-CH-HHHHh--cCCEEecCCCCCCCcCcccccceEEEE-CCCCCHHHHHHHHHHHc--CC
Confidence 88 5555543444 33 34443 2478999987542221 1 122333 45567777889999998 74
Q ss_pred -eEEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHhcCCCCc
Q 023866 166 -IWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKS-GKHPGQLKDDVASPGG 243 (276)
Q Consensus 166 -~~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~-~~~~~~l~~~v~sp~g 243 (276)
.+++++++||..+|.+++.|+.++. ++.+ .. ..+..++|+...+++.+. +.+|+.|.+.+..+..
T Consensus 115 ~~~~~t~eeHD~~~A~ishLpH~ia~---al~~----~~------~~~~t~~fr~l~ria~~~~~~~p~lw~dI~~~N~~ 181 (197)
T PRK06444 115 HFVEMTADEHDLLMSEIMVKPYIISM---ILKD----IK------SDIKTGSFDKLLEVSEIKEKENWEVFNDTIIYNPY 181 (197)
T ss_pred EEEEeCHHHHHHHHHHHHHHHHHHHH---HHcc----CC------CCCCCccHHHHHHHHHHhccCCHHHHHHHHHHCch
Confidence 4889999999999999999987643 3332 11 255677788888777442 4689999999877655
Q ss_pred hHHHHHHHHHh
Q 023866 244 TTIAGIHELEK 254 (276)
Q Consensus 244 ~t~~~l~~l~~ 254 (276)
. +.++++.+
T Consensus 182 a--~~~~~~~~ 190 (197)
T PRK06444 182 T--NVINDLIE 190 (197)
T ss_pred H--HHHHHHHH
Confidence 5 55555544
No 63
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.62 E-value=3.2e-13 Score=118.37 Aligned_cols=249 Identities=13% Similarity=0.087 Sum_probs=142.8
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-------------cCchhhhcCCC
Q 023866 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-------------SDNNAVVEYSD 73 (276)
Q Consensus 7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-------------~~~~~~~~~aD 73 (276)
+|+.|||+|||+|.||+.++..|.++|+ +|+++ .|++. +.+.+.|+... .+..+....+|
T Consensus 2 ~~~~m~I~IiG~GaiG~~lA~~L~~~g~----~V~~~-~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D 74 (313)
T PRK06249 2 DSETPRIGIIGTGAIGGFYGAMLARAGF----DVHFL-LRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCD 74 (313)
T ss_pred CCcCcEEEEECCCHHHHHHHHHHHHCCC----eEEEE-EeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCC
Confidence 4667899999999999999999999999 99999 88753 44545443321 11223456899
Q ss_pred EEEEeeCcccHHHHHHHHhhccccccCCcccCCCCcccHHHHHHHcCCCcEEEEecC------cccc---ccCcceEeec
Q 023866 74 VVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPN------TPSA---VGEAATVMSL 144 (276)
Q Consensus 74 vI~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~~~~vv~~~p~------~~~~---~~~g~~~i~~ 144 (276)
+||+|||..++.+++..+.. -+.++..++.-.+|+...+.+++.+|..+++..... .|.. .+.|.+.+..
T Consensus 75 ~vilavK~~~~~~~~~~l~~-~~~~~~~iv~lqNG~~~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~ 153 (313)
T PRK06249 75 WVLVGLKTTANALLAPLIPQ-VAAPDAKVLLLQNGLGVEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGY 153 (313)
T ss_pred EEEEEecCCChHhHHHHHhh-hcCCCCEEEEecCCCCcHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEec
Confidence 99999999998888887721 011111222333888445788888886666654321 1211 1223333322
Q ss_pred CCCCC-----HHHHHHHHHHhhhcCceEEcCCC-------------CchhhhhhcCchHHHH----------HHHHHHHH
Q 023866 145 GGTAT-----EEDGELIGKLFGSVGKIWRADEK-------------LFDAITGLSGSGPAYI----------FLAIEALA 196 (276)
Q Consensus 145 ~~~~~-----~~~~~~v~~ll~~~G~~~~~~e~-------------~~~~~~a~~g~~p~~~----------~~~~~~l~ 196 (276)
.++.+ .+..+.+..+|+..|..+...++ -++.++++.++....+ ..++.-..
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~E~~ 233 (313)
T PRK06249 154 HSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMAEVI 233 (313)
T ss_pred CCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHHHHH
Confidence 12222 45667788899998976555544 3566778777644322 12222223
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHhcCCCCchHHHHHH-----HHHhCChHHHHHHHHHHHHH
Q 023866 197 DGGVAAGLPRELALGLASQTVLGAASMVTKS-GKHPGQLKDDVASPGGTTIAGIH-----ELEKSGFRGILMNAVVAAAK 270 (276)
Q Consensus 197 ~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~-~~~~~~l~~~v~sp~g~t~~~l~-----~l~~~~~~~~~~~a~~~~~~ 270 (276)
..+.+.|++.+.. .+...+.- ..+. ...+.++. ++...+-+-+..|. .-++.|+.....+.+...++
T Consensus 234 ~va~a~Gi~~~~~--~~~~~~~~----~~~~~~~~sSM~q-D~~~gr~tEid~i~G~vv~~a~~~Gi~~P~~~~l~~~l~ 306 (313)
T PRK06249 234 QGAAACGHTLPEG--YADHMLAV----TERMPDYRPSMYH-DFEEGRPLELEAIYANPLAAARAAGCAMPRVEMLYQALE 306 (313)
T ss_pred HHHHhcCCCCChh--HHHHHHHH----hhcCCCCCChHHH-HHHCCCcccHHHHhhHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 3355778763221 12222211 1111 12345554 44333333344433 33566888888887766554
No 64
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.61 E-value=1.6e-13 Score=127.16 Aligned_cols=153 Identities=18% Similarity=0.130 Sum_probs=114.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHH-----------HHcC-------------ceeccC
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-----------ESIG-------------VKVLSD 64 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l-----------~~~g-------------~~~~~~ 64 (276)
+..||||||+|.||..||..|.++|+ +|++| |+++++++.. .+.| +..+.+
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG~----~V~l~-D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~ 80 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAGH----TVLLY-DARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEA 80 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCC
Confidence 34789999999999999999999999 99999 9999988763 3344 456666
Q ss_pred chhhhcCCCEEEEeeCcc-cHHHH-HHHHhhccccccCCcc-cCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcce
Q 023866 65 NNAVVEYSDVVVFSVKPQ-VDKAA-VITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAAT 140 (276)
Q Consensus 65 ~~~~~~~aDvI~lav~~~-~~~~v-l~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~ 140 (276)
..+ +.+||+||.||+.+ +++.. +.++. ...+...++ +..+++ ++..+++.+. ..++++.|.-.|..+.. ..
T Consensus 81 ~~~-~~~aDlViEav~E~~~vK~~vf~~l~--~~~~~~ailasntStl-~i~~la~~~~~p~r~~G~hff~Pa~v~~-Lv 155 (507)
T PRK08268 81 LAD-LADCDLVVEAIVERLDVKQALFAQLE--AIVSPDCILATNTSSL-SITAIAAALKHPERVAGLHFFNPVPLMK-LV 155 (507)
T ss_pred HHH-hCCCCEEEEcCcccHHHHHHHHHHHH--hhCCCCcEEEECCCCC-CHHHHHhhcCCcccEEEEeecCCcccCe-eE
Confidence 655 57999999999855 56654 44442 122113344 455777 8888888765 35678888776666543 44
Q ss_pred EeecCCCCCHHHHHHHHHHhhhcCce-EEcCC
Q 023866 141 VMSLGGTATEEDGELIGKLFGSVGKI-WRADE 171 (276)
Q Consensus 141 ~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e 171 (276)
-++.+..++++.++.+.++++.+|+. +++++
T Consensus 156 Evv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d 187 (507)
T PRK08268 156 EVVSGLATDPAVADALYALARAWGKTPVRAKD 187 (507)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCceEEecC
Confidence 56677788999999999999999976 77765
No 65
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.61 E-value=2.4e-13 Score=117.36 Aligned_cols=153 Identities=18% Similarity=0.130 Sum_probs=111.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH-----------HHHcC-------------ceeccC
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-----------FESIG-------------VKVLSD 64 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~-----------l~~~g-------------~~~~~~ 64 (276)
++.||||||+|.||..||..++++|+ +|++| |++++.++. +.+.| ++.+++
T Consensus 4 ~~~~V~ViGaG~mG~~iA~~~a~~G~----~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~ 78 (286)
T PRK07819 4 AIQRVGVVGAGQMGAGIAEVCARAGV----DVLVF-ETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTD 78 (286)
T ss_pred CccEEEEEcccHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCC
Confidence 34689999999999999999999999 99999 999998765 22223 224555
Q ss_pred chhhhcCCCEEEEeeCcc-cHH-HHHHHHhhccc--cccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcc
Q 023866 65 NNAVVEYSDVVVFSVKPQ-VDK-AAVITEEAFGF--CCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAA 139 (276)
Q Consensus 65 ~~~~~~~aDvI~lav~~~-~~~-~vl~~~~~~~~--~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~ 139 (276)
. +.+++||+||.|++.+ +++ .++..+. .. .++..+.+..+++ ++..++..+. ..+++..|+-.|..+...+
T Consensus 79 ~-~~~~~~d~ViEav~E~~~~K~~l~~~l~--~~~~~~~~il~snTS~~-~~~~la~~~~~~~r~~g~hf~~P~~~~~lv 154 (286)
T PRK07819 79 L-GDFADRQLVIEAVVEDEAVKTEIFAELD--KVVTDPDAVLASNTSSI-PIMKLAAATKRPGRVLGLHFFNPVPVLPLV 154 (286)
T ss_pred H-HHhCCCCEEEEecccCHHHHHHHHHHHH--HhhCCCCcEEEECCCCC-CHHHHHhhcCCCccEEEEecCCCcccCceE
Confidence 5 5579999999999865 455 4444442 11 1112233444666 7888887665 3578888888777766555
Q ss_pred eEeecCCCCCHHHHHHHHHHhh-hcCce-EEcCC
Q 023866 140 TVMSLGGTATEEDGELIGKLFG-SVGKI-WRADE 171 (276)
Q Consensus 140 ~~i~~~~~~~~~~~~~v~~ll~-~~G~~-~~~~e 171 (276)
. +..+..++++.++.+.+++. .+|+. +.+.+
T Consensus 155 E-lv~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d 187 (286)
T PRK07819 155 E-LVPTLVTSEATVARAEEFASDVLGKQVVRAQD 187 (286)
T ss_pred E-EeCCCCCCHHHHHHHHHHHHHhCCCCceEecC
Confidence 5 45577889999999999988 69976 66665
No 66
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.60 E-value=1.7e-13 Score=121.58 Aligned_cols=147 Identities=13% Similarity=0.111 Sum_probs=95.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee----------------ccCchhhhcCCC
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV----------------LSDNNAVVEYSD 73 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~----------------~~~~~~~~~~aD 73 (276)
+|||+|||+|.||++++..|.++|+ +|++| +|++. .+.+++.|+.+ ..+..+.+.++|
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~----~V~~~-~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 75 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGA----DVTLI-GRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATAD 75 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCC----cEEEE-ecHHH-HHHHHhcCceeecCCCcceecccceeEeccChhhccCCC
Confidence 4789999999999999999999999 99999 98753 46666555432 112235578999
Q ss_pred EEEEeeCcccHHHHHHHHhhccccccCCcccCCCCcccHHHHHHHcCCCcEEEE-ec--------CccccccCcceEeec
Q 023866 74 VVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRV-MP--------NTPSAVGEAATVMSL 144 (276)
Q Consensus 74 vI~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~~~~vv~~-~p--------~~~~~~~~g~~~i~~ 144 (276)
+||+|||++++.+++.++.. .+.++..+++..+|+...+.+++.++..+++.. .| ......+.|...+
T Consensus 76 ~vil~vk~~~~~~~~~~l~~-~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~l~~-- 152 (341)
T PRK08229 76 LVLVTVKSAATADAAAALAG-HARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGALAI-- 152 (341)
T ss_pred EEEEEecCcchHHHHHHHHh-hCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCceEe--
Confidence 99999999999999888731 111112233334787335778888875444432 11 1111112233222
Q ss_pred CCCCCHHHHHHHHHHhhhcCceEE
Q 023866 145 GGTATEEDGELIGKLFGSVGKIWR 168 (276)
Q Consensus 145 ~~~~~~~~~~~v~~ll~~~G~~~~ 168 (276)
+. .+.++.+.++|+..|..++
T Consensus 153 ~~---~~~~~~~~~~l~~~g~~~~ 173 (341)
T PRK08229 153 EA---SPALRPFAAAFARAGLPLV 173 (341)
T ss_pred cC---CchHHHHHHHHHhcCCCce
Confidence 21 2456889999999996533
No 67
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.59 E-value=1.6e-13 Score=121.46 Aligned_cols=154 Identities=14% Similarity=0.083 Sum_probs=110.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc---------C------ceeccCchhhhcCCC
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI---------G------VKVLSDNNAVVEYSD 73 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~---------g------~~~~~~~~~~~~~aD 73 (276)
.+|||+|||+|.||++++..|.+.| ++++| .|+++..+.+.+. + +..+++..++++++|
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~g-----~v~l~-~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aD 79 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARRG-----PTLQW-VRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCAD 79 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-----CEEEE-eCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCC
Confidence 4589999999999999999999887 57888 8999988877752 1 223456667788999
Q ss_pred EEEEeeCcccHHHHHHHHhhccccccCCcccCCCCcccH-------HHHHHHcCCC-cEEEEecCccccccCcceE--ee
Q 023866 74 VVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRW-------SRWVEWTGHS-RFIRVMPNTPSAVGEAATV--MS 143 (276)
Q Consensus 74 vI~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~-------~~l~~~l~~~-~vv~~~p~~~~~~~~g~~~--i~ 143 (276)
+||++||++.++++++++.. -+.+..++++-.+|+ .. +.+++.+++. ..+...|+++.+++.|... +.
T Consensus 80 lVilavps~~~~~vl~~i~~-~l~~~~~vIsl~kGi-~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~t~~vi 157 (341)
T PRK12439 80 VVVMGVPSHGFRGVLTELAK-ELRPWVPVVSLVKGL-EQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYAAAAVL 157 (341)
T ss_pred EEEEEeCHHHHHHHHHHHHh-hcCCCCEEEEEEeCC-cCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCCeEEEE
Confidence 99999999999999999821 011111233333677 42 5677777643 3456789999988777632 22
Q ss_pred cCCCCCHHHHHHHHHHhhhcCceEEcCCC
Q 023866 144 LGGTATEEDGELIGKLFGSVGKIWRADEK 172 (276)
Q Consensus 144 ~~~~~~~~~~~~v~~ll~~~G~~~~~~e~ 172 (276)
.+ .+++..+.++++|+.-+..++.+++
T Consensus 158 a~--~~~~~~~~v~~lf~~~~~~v~~s~D 184 (341)
T PRK12439 158 AM--PDQHLATRLSPLFRTRRFRVYTTDD 184 (341)
T ss_pred Ee--CCHHHHHHHHHHhCCCCEEEEEcCc
Confidence 22 2677788999999988866666665
No 68
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.59 E-value=3.3e-13 Score=118.97 Aligned_cols=156 Identities=12% Similarity=0.115 Sum_probs=99.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc--C------------ceeccCchhhh-cCCCEE
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--G------------VKVLSDNNAVV-EYSDVV 75 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--g------------~~~~~~~~~~~-~~aDvI 75 (276)
|||+|||+|.||++++..|.++|+ +|++| +|+++..+.+++. + +..+.+..+.+ .++|+|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~----~V~l~-~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dli 75 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKI----SVNLW-GRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCI 75 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC----eEEEE-ecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEE
Confidence 589999999999999999999998 99999 9999888877652 1 12334445555 589999
Q ss_pred EEeeCcccHHHHHHHHhhccccccCCcccCCCCccc------HHHHHHHcCCCcEEE-EecCccccccCc-ceEeecCCC
Q 023866 76 VFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQR------WSRWVEWTGHSRFIR-VMPNTPSAVGEA-ATVMSLGGT 147 (276)
Q Consensus 76 ~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~------~~~l~~~l~~~~vv~-~~p~~~~~~~~g-~~~i~~~~~ 147 (276)
|++||+++++++++++....+.+...++...+|+.. .+.+++.++..++.. .-|+.+.....+ .+.+... +
T Consensus 76 iiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a~~~~~~~~~~~~~~-~ 154 (326)
T PRK14620 76 ILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFAKEIAEKLPCSIVLA-G 154 (326)
T ss_pred EEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHHHHHHcCCCcEEEEe-c
Confidence 999999999999998831011111223333367722 356777776544432 234433333332 2222222 1
Q ss_pred CCHHHHHHHHHHhhhcCceEEcCCC
Q 023866 148 ATEEDGELIGKLFGSVGKIWRADEK 172 (276)
Q Consensus 148 ~~~~~~~~v~~ll~~~G~~~~~~e~ 172 (276)
.+.+..+.+.++|+.-+..++.+++
T Consensus 155 ~~~~~~~~l~~~l~~~~~~~~~~~D 179 (326)
T PRK14620 155 QNETLGSSLISKLSNENLKIIYSQD 179 (326)
T ss_pred CCHHHHHHHHHHHCCCCeEEEecCc
Confidence 2445566677777766655666665
No 69
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.58 E-value=4.2e-13 Score=114.36 Aligned_cols=207 Identities=20% Similarity=0.147 Sum_probs=138.0
Q ss_pred CeEEEEcccHH--------------------HHHHHHHHHhCCCCCCCeEEEEeCCCHHHH-----HHHHHcCceeccCc
Q 023866 11 FILGFIGAGKM--------------------AESIAKGVAKSGVLPPDRICTAVHSNLKRR-----DAFESIGVKVLSDN 65 (276)
Q Consensus 11 ~kIgiIG~G~m--------------------G~~la~~l~~~g~~~~~~V~v~~~r~~~~~-----~~l~~~g~~~~~~~ 65 (276)
|||.+.|+||- |.+||.+|+++|| +|++| ||++++. +.+.+.|+..+.++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGh----eV~V~-Drnrsa~e~e~~e~LaeaGA~~AaS~ 75 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGH----DVVLA-EPNREFMSDDLWKKVEDAGVKVVSDD 75 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCC----EEEEE-eCChhhhhhhhhHHHHHCCCeecCCH
Confidence 68999999983 8899999999999 99999 9987655 35777899988889
Q ss_pred hhhhcCCCEEEEeeCcc-cHHHHHHHHhhccccccCCcccCCCCcccHHHHHHHcC--------CCcEEEEecC-ccccc
Q 023866 66 NAVVEYSDVVVFSVKPQ-VDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG--------HSRFIRVMPN-TPSAV 135 (276)
Q Consensus 66 ~~~~~~aDvI~lav~~~-~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~--------~~~vv~~~p~-~~~~~ 135 (276)
.++++++|+||+|+|.. ++++|+..+.. .+.+++ ++-..+++ +.+.+...|. +..+..+||. .|..-
T Consensus 76 aEAAa~ADVVIL~LPd~aaV~eVl~GLaa-~L~~Ga-IVID~STI-sP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~ 152 (341)
T TIGR01724 76 KEAAKHGEIHVLFTPFGKGTFSIARTIIE-HVPENA-VICNTCTV-SPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTP 152 (341)
T ss_pred HHHHhCCCEEEEecCCHHHHHHHHHHHHh-cCCCCC-EEEECCCC-CHHHHHHHHHHHhhcCccccCeeccCCCCCCCCC
Confidence 99999999999999866 57888766521 111111 22222556 6655544432 2445666664 23333
Q ss_pred cCcceEeecC-----CCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHH---HH-HHcCCC
Q 023866 136 GEAATVMSLG-----GTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALAD---GG-VAAGLP 205 (276)
Q Consensus 136 ~~g~~~i~~~-----~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~---~~-~~~Gl~ 205 (276)
+++..++... .-.++|+++++.++.+..|+. +.+..+....+.-+++ ...+....++.+ .+ +-.|-|
T Consensus 153 ~~~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~pa~l~~~v~Dm~s---~vta~~~~gil~y~~~~t~i~~ap 229 (341)
T TIGR01724 153 QHGHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVVPADVTSAVADMGS---LVTAVALAGVLDYYYVGTQIINAP 229 (341)
T ss_pred CCceeeeccccccccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHH---HHHHHHHHHHHHHHHHHHHHhcCc
Confidence 4433333211 125789999999999999976 7777665554444332 211222223332 23 357888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 023866 206 RELALGLASQTVLGAASMVTKSG 228 (276)
Q Consensus 206 ~~~a~~~~~~~~~g~~~~~~~~~ 228 (276)
.+.+.+.+..++...+.++..+|
T Consensus 230 ~~~~~~~~~~~l~~~a~l~~~~G 252 (341)
T TIGR01724 230 KEMIEKQILMTLQTMASLVETSG 252 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888888888888887654
No 70
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.57 E-value=5.2e-13 Score=123.38 Aligned_cols=153 Identities=18% Similarity=0.141 Sum_probs=112.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHH-----------HHcC-------------ceeccC
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-----------ESIG-------------VKVLSD 64 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l-----------~~~g-------------~~~~~~ 64 (276)
+.+||+|||+|.||..||..|.++|+ +|++| |++++++++. .+.| ++.+++
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~----~V~l~-d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~ 78 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGH----QVLLY-DIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTD 78 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCC
Confidence 46789999999999999999999999 99999 9999987653 2233 345566
Q ss_pred chhhhcCCCEEEEeeCcc-cHHH-HHHHHhhccccccCCcc-cCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcce
Q 023866 65 NNAVVEYSDVVVFSVKPQ-VDKA-AVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAAT 140 (276)
Q Consensus 65 ~~~~~~~aDvI~lav~~~-~~~~-vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~ 140 (276)
..+ +.+||+||.|++.+ +++. ++.++. ...++..++ +..+++ ++..+.+.+. ..+++.+|.-.|..+.. ..
T Consensus 79 ~~~-l~~aDlVIEav~E~~~vK~~vf~~l~--~~~~~~~IlasnTStl-~i~~iA~~~~~p~r~~G~HFf~Papv~~-Lv 153 (503)
T TIGR02279 79 LHA-LADAGLVIEAIVENLEVKKALFAQLE--ELCPADTIIASNTSSL-SITAIAAGLARPERVAGLHFFNPAPVMA-LV 153 (503)
T ss_pred HHH-hCCCCEEEEcCcCcHHHHHHHHHHHH--hhCCCCeEEEECCCCC-CHHHHHHhcCcccceEEEeccCccccCc-eE
Confidence 654 57999999999854 4554 444552 111112334 344777 8888887775 35788888766665543 44
Q ss_pred EeecCCCCCHHHHHHHHHHhhhcCce-EEcCC
Q 023866 141 VMSLGGTATEEDGELIGKLFGSVGKI-WRADE 171 (276)
Q Consensus 141 ~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e 171 (276)
-++.++.++++.++.+.++++.+|+. +++++
T Consensus 154 Evv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d 185 (503)
T TIGR02279 154 EVVSGLATAAEVAEQLYETALAWGKQPVHCHS 185 (503)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCC
Confidence 56778888999999999999999986 77764
No 71
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.57 E-value=1.3e-12 Score=114.17 Aligned_cols=155 Identities=14% Similarity=0.149 Sum_probs=100.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee-------------ccCchhhhcCCCEEEE
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-------------LSDNNAVVEYSDVVVF 77 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-------------~~~~~~~~~~aDvI~l 77 (276)
|||+|||+|.||..++..|.++|+ +|+++ +| +++.+.+++.|+.+ .++..+....+|+||+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~----~V~~~-~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vil 74 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGR----DVTFL-VR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVIL 74 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCC----ceEEE-ec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEE
Confidence 689999999999999999999999 99999 99 88888887765432 2233455578999999
Q ss_pred eeCcccHHHHHHHHhhccccccCCcccCCCCcccHHHHHHHcCCCcEEEEecCccc------cc---cCcceEeecCCCC
Q 023866 78 SVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNTPS------AV---GEAATVMSLGGTA 148 (276)
Q Consensus 78 av~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~~~~vv~~~p~~~~------~~---~~g~~~i~~~~~~ 148 (276)
|||++++++++.++.. -+.++..++...+|+...+.+.+.++..+++......+. .+ +.+...+...++.
T Consensus 75 avk~~~~~~~~~~l~~-~~~~~~~ii~~~nG~~~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~ 153 (305)
T PRK12921 75 AVKAYQLDAAIPDLKP-LVGEDTVIIPLQNGIGQLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQ 153 (305)
T ss_pred EecccCHHHHHHHHHh-hcCCCCEEEEeeCCCChHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCC
Confidence 9999999999988831 011112233333788346778888875454443222221 11 1122222111222
Q ss_pred CHHHHHHHHHHhhhcCceEEcCCC
Q 023866 149 TEEDGELIGKLFGSVGKIWRADEK 172 (276)
Q Consensus 149 ~~~~~~~v~~ll~~~G~~~~~~e~ 172 (276)
..+..+.+.++|+..|..+...++
T Consensus 154 ~~~~~~~l~~~l~~~g~~~~~~~d 177 (305)
T PRK12921 154 RSERTRAVRDALAGARLEVVLSEN 177 (305)
T ss_pred cCHHHHHHHHHHHhCCCCceecHH
Confidence 345667788888888865444444
No 72
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.55 E-value=9.9e-14 Score=111.59 Aligned_cols=151 Identities=21% Similarity=0.287 Sum_probs=107.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC-HHHHHHHHH-cCce-eccCchhhhcCCCEEEEeeCcccHHH
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN-LKRRDAFES-IGVK-VLSDNNAVVEYSDVVVFSVKPQVDKA 86 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~-~~~~~~l~~-~g~~-~~~~~~~~~~~aDvI~lav~~~~~~~ 86 (276)
||+|+|+|.|+||+++++.|.++|| +|.+. +|+ +++.+.+.+ .+.. ...+++++++.+|+||++||-+.+.+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~----eV~ig-s~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~ 75 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGH----EVIIG-SSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPD 75 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCC----eEEEe-cCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHh
Confidence 6899999999999999999999999 99988 554 455554444 3433 23578889999999999999999988
Q ss_pred HHHHHhh-ccccccCCcccCC-----------------CCcccHHHHHHHcCCCcEEEEecCccccc-------cCcceE
Q 023866 87 AVITEEA-FGFCCCRSEIERP-----------------SGLQRWSRWVEWTGHSRFIRVMPNTPSAV-------GEAATV 141 (276)
Q Consensus 87 vl~~~~~-~~~~~~~~~l~~~-----------------~g~~~~~~l~~~l~~~~vv~~~p~~~~~~-------~~g~~~ 141 (276)
++.++.. .+ ++-+++.. .+. ..+.+++++|+.+++++..+.+... +.....
T Consensus 76 v~~~l~~~~~---~KIvID~tnp~~~~~~~~~~~~~~~~~s-aae~va~~lp~akVVkAFn~i~a~~l~~~~~~~~~~~v 151 (211)
T COG2085 76 VLAELRDALG---GKIVIDATNPIEVNGEPGDLYLVPSEGS-AAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPGGRRDV 151 (211)
T ss_pred HHHHHHHHhC---CeEEEecCCCccccCCccccccCCCCCc-HHHHHHHHCCCcchhhhhcccCHHHhccCCCcCCceeE
Confidence 8888731 11 12222211 222 3477899999888999877655432 112233
Q ss_pred eecCCCCCHHHHHHHHHHhhhcCce-EEcCC
Q 023866 142 MSLGGTATEEDGELIGKLFGSVGKI-WRADE 171 (276)
Q Consensus 142 i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e 171 (276)
+++++ +.++.+.+.++.+.+|.. +-.+.
T Consensus 152 ~vagD--D~~Ak~~v~~L~~~iG~~~ld~G~ 180 (211)
T COG2085 152 LVAGD--DAEAKAVVAELAEDIGFRPLDAGP 180 (211)
T ss_pred EEecC--cHHHHHHHHHHHHhcCcceeeccc
Confidence 44453 788999999999999964 65554
No 73
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.55 E-value=2.3e-13 Score=123.60 Aligned_cols=190 Identities=16% Similarity=0.163 Sum_probs=117.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-------------------cC-ceeccCchhhhc
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------IG-VKVLSDNNAVVE 70 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~~ 70 (276)
|||+|||+|.||.+++..|.++|| +|++| |+++++.+.+.+ .| +..+.+..++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~----~V~~~-d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~ 75 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGH----EVTGV-DIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIR 75 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCC----eEEEE-ECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHh
Confidence 589999999999999999999999 99999 999999887764 23 455667778889
Q ss_pred CCCEEEEeeCcc----------cHHHHHHHHhhccccccCCcccCCCCc--ccHHHHH-HHcC---C----C-cEEEEec
Q 023866 71 YSDVVVFSVKPQ----------VDKAAVITEEAFGFCCCRSEIERPSGL--QRWSRWV-EWTG---H----S-RFIRVMP 129 (276)
Q Consensus 71 ~aDvI~lav~~~----------~~~~vl~~~~~~~~~~~~~~l~~~~g~--~~~~~l~-~~l~---~----~-~vv~~~p 129 (276)
+||+||+|||.. .+.+++.++.. .++++.-++. .+++ .+.+.+. ..+. + . -.+...|
T Consensus 76 ~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~-~l~~g~lvi~-~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~P 153 (411)
T TIGR03026 76 DADVIIICVPTPLKEDGSPDLSYVESAAETIAK-HLRKGATVVL-ESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNP 153 (411)
T ss_pred hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHH-hcCCCCEEEE-eCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECC
Confidence 999999999854 26666666621 1111122222 1333 0122332 2221 1 1 1123334
Q ss_pred CccccccCcce--------EeecCCCCCHHHHHHHHHHhhhcC-c-eEEcCCCCchhhhhhcCchHHHHHHHHHHHHH--
Q 023866 130 NTPSAVGEAAT--------VMSLGGTATEEDGELIGKLFGSVG-K-IWRADEKLFDAITGLSGSGPAYIFLAIEALAD-- 197 (276)
Q Consensus 130 ~~~~~~~~g~~--------~i~~~~~~~~~~~~~v~~ll~~~G-~-~~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~-- 197 (276)
.. ...|.. .+..+ .+++..+.++++|+.++ . .+++++-.-..++.+. .+.|.+..+..+.|
T Consensus 154 e~---~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~--~N~~~a~~ia~~nE~~ 226 (411)
T TIGR03026 154 EF---LREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLA--ENTFRAVKIAFANELA 226 (411)
T ss_pred Cc---CCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 32 222221 23333 37899999999999997 3 4666553333333333 24454444444444
Q ss_pred -HHHHcCCCHHHHHHHHH
Q 023866 198 -GGVAAGLPRELALGLAS 214 (276)
Q Consensus 198 -~~~~~Gl~~~~a~~~~~ 214 (276)
.+.+.|+|.++..+++.
T Consensus 227 ~la~~~GiD~~~v~~~~~ 244 (411)
T TIGR03026 227 RICEALGIDVYEVIEAAG 244 (411)
T ss_pred HHHHHhCCCHHHHHHHhC
Confidence 35789999998877654
No 74
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.53 E-value=9.1e-13 Score=115.20 Aligned_cols=184 Identities=17% Similarity=0.188 Sum_probs=114.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHHH
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAV 88 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl 88 (276)
+.|||+|||+|+||++|+..|.++|| +|++| +|++. .+..++++++|+||+++|.+.+++++
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~----~V~~~-~r~~~-------------~~~~~~~~~advvi~~vp~~~~~~v~ 64 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGH----RVRVW-SRRSG-------------LSLAAVLADADVIVSAVSMKGVRPVA 64 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCC----EEEEE-eCCCC-------------CCHHHHHhcCCEEEEECChHHHHHHH
Confidence 56899999999999999999999999 99999 99853 35667788999999999999999998
Q ss_pred HHHhhccccccCCcccCCCCcc-----c-HHHHHHHcCCCcEEEE-ecCccccccCc--ceEeecCCCCCHHHHHHHHHH
Q 023866 89 ITEEAFGFCCCRSEIERPSGLQ-----R-WSRWVEWTGHSRFIRV-MPNTPSAVGEA--ATVMSLGGTATEEDGELIGKL 159 (276)
Q Consensus 89 ~~~~~~~~~~~~~~l~~~~g~~-----~-~~~l~~~l~~~~vv~~-~p~~~~~~~~g--~~~i~~~~~~~~~~~~~v~~l 159 (276)
.++....+.+...+++..+|+. . .+.++..+++.+++.. -|+.+..+..+ ...+..+ .+++..+.++++
T Consensus 65 ~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag--~~~~~~~~v~~l 142 (308)
T PRK14619 65 EQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVLSGPNLSKEIQQGLPAATVVAS--RDLAAAETVQQI 142 (308)
T ss_pred HHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEEECCCcHHHHhcCCCeEEEEEe--CCHHHHHHHHHH
Confidence 8773111222122333323441 1 1334445555565532 24444433222 2223323 378899999999
Q ss_pred hhhcCceEEcCCCCch--------hhhhh-cC------c-hHHHHHHHHHHHHHH---HHHcCCCHHHHHHH
Q 023866 160 FGSVGKIWRADEKLFD--------AITGL-SG------S-GPAYIFLAIEALADG---GVAAGLPRELALGL 212 (276)
Q Consensus 160 l~~~G~~~~~~e~~~~--------~~~a~-~g------~-~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~ 212 (276)
|+..|..++...+..- .+.++ +| . .+.....+..++.|. +.+.|++++..+++
T Consensus 143 l~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~ 214 (308)
T PRK14619 143 FSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFYGL 214 (308)
T ss_pred hCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCccccccc
Confidence 9999965433333111 01111 11 0 122234445555554 56889998887764
No 75
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.53 E-value=1.3e-12 Score=112.20 Aligned_cols=157 Identities=16% Similarity=0.143 Sum_probs=111.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc--------------CceeccCchhhhcCCCEE
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------------GVKVLSDNNAVVEYSDVV 75 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--------------g~~~~~~~~~~~~~aDvI 75 (276)
++||+|||+|.+|++||.-|.++|| +|.+| .|+++..+++... ++..++|..+++++||+|
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~----~V~lw-~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~i 75 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGH----EVRLW-GRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADII 75 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCC----eeEEE-ecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEE
Confidence 4799999999999999999999999 99999 9999988887651 234567788889999999
Q ss_pred EEeeCcccHHHHHHHHhhccccccCCcccCCCCcc------cHHHHHHHcCCCcE-EEEecCccccccCcc-eEeecCCC
Q 023866 76 VFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQ------RWSRWVEWTGHSRF-IRVMPNTPSAVGEAA-TVMSLGGT 147 (276)
Q Consensus 76 ~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~------~~~~l~~~l~~~~v-v~~~p~~~~~~~~g~-~~i~~~~~ 147 (276)
+++||.+.+++++.++. .-+.++..+++...|+. -.+.+++.+|..++ +-.-||++.++.+|. +.++.+ .
T Consensus 76 v~avPs~~~r~v~~~l~-~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~va-s 153 (329)
T COG0240 76 VIAVPSQALREVLRQLK-PLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVA-S 153 (329)
T ss_pred EEECChHHHHHHHHHHh-hhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcEEEEe-c
Confidence 99999999999999982 11111122222224441 12556777775433 334588888887764 333322 2
Q ss_pred CCHHHHHHHHHHhhhcCceEEcCCCC
Q 023866 148 ATEEDGELIGKLFGSVGKIWRADEKL 173 (276)
Q Consensus 148 ~~~~~~~~v~~ll~~~G~~~~~~e~~ 173 (276)
.+++..+.++.+|+.=-..++.+++.
T Consensus 154 ~d~~~a~~v~~~f~~~~Frvy~~~Dv 179 (329)
T COG0240 154 NDQEAAEKVQALFSSPYFRVYTSTDV 179 (329)
T ss_pred CCHHHHHHHHHHhCCCcEEEEecCch
Confidence 37778888999998833346666653
No 76
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.52 E-value=7.2e-12 Score=108.99 Aligned_cols=243 Identities=15% Similarity=0.145 Sum_probs=149.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceecc------------CchhhhcCCCEEEEe
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLS------------DNNAVVEYSDVVVFS 78 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~------------~~~~~~~~aDvI~la 78 (276)
|||.|+|+|.||+.++..|.++|+ +|+++ .|++. ++++++.|+.+.. ...+....+|+||++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~----~V~~~-~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~ 74 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGH----DVTLL-VRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVT 74 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCC----eEEEE-ecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEE
Confidence 799999999999999999999997 99999 78755 8888887765432 122445689999999
Q ss_pred eCcccHHHHHHHHhhccccccCCcccCC-------CCcccHHHHHHHcCCCcEEEEe-cCc--------cccccCcceEe
Q 023866 79 VKPQVDKAAVITEEAFGFCCCRSEIERP-------SGLQRWSRWVEWTGHSRFIRVM-PNT--------PSAVGEAATVM 142 (276)
Q Consensus 79 v~~~~~~~vl~~~~~~~~~~~~~~l~~~-------~g~~~~~~l~~~l~~~~vv~~~-p~~--------~~~~~~g~~~i 142 (276)
||..++.++++.+ .+++.+. +|+...+.+++.++..+++..+ +.. -...+.|.+.+
T Consensus 75 vKa~q~~~al~~l--------~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~i 146 (307)
T COG1893 75 VKAYQLEEALPSL--------APLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVI 146 (307)
T ss_pred eccccHHHHHHHh--------hhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEE
Confidence 9999999999999 6666554 8886667788888754444322 211 11223333333
Q ss_pred ecCCCCCHHHHHHHHHHhhhcCceEEcCCC-------------CchhhhhhcCchHHH-------HHHHHHHHHH---HH
Q 023866 143 SLGGTATEEDGELIGKLFGSVGKIWRADEK-------------LFDAITGLSGSGPAY-------IFLAIEALAD---GG 199 (276)
Q Consensus 143 ~~~~~~~~~~~~~v~~ll~~~G~~~~~~e~-------------~~~~~~a~~g~~p~~-------~~~~~~~l~~---~~ 199 (276)
..-.+..++..+.+.++|+..|...+..++ -++.++++..|-..- ...+...+.| .+
T Consensus 147 g~~~~~~~~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~ 226 (307)
T COG1893 147 GELRGGRDELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVA 226 (307)
T ss_pred ccCCCCchHHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHH
Confidence 322333457888899999888866555443 355666666654332 1222222333 34
Q ss_pred HHcCCCHH-HHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHH-----HHHHhCChHHHHHHHHHHHHHHHh
Q 023866 200 VAAGLPRE-LALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI-----HELEKSGFRGILMNAVVAAAKRSR 273 (276)
Q Consensus 200 ~~~Gl~~~-~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~~l-----~~l~~~~~~~~~~~a~~~~~~r~~ 273 (276)
.+.|++.+ +..+.+......+. . ...+.++.|.. ..+-+-+..| +.-++.|+.....+.+...++...
T Consensus 227 ~~~g~~~~~~~~~~v~~~~~~~~--~---~~~sSM~qDl~-~gr~tEid~i~G~vv~~a~~~gi~~P~~~~L~~lvk~~e 300 (307)
T COG1893 227 RAEGVELPEEVVERVLAVIRATD--A---ENYSSMLQDLE-KGRPTEIDAINGAVVRLAKKHGLATPVNDTLYALLKAKE 300 (307)
T ss_pred HhccCCCCHHHHHHHHHHHHhcc--c---ccCchHHHHHH-cCCcccHHHHhhHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 57774322 22233333333221 0 11234444433 3333434443 344667888888888877666543
No 77
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=1.1e-11 Score=100.70 Aligned_cols=206 Identities=17% Similarity=0.195 Sum_probs=136.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhh---cCCCEEEEeeCcc-cHHH
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVV---EYSDVVVFSVKPQ-VDKA 86 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~---~~aDvI~lav~~~-~~~~ 86 (276)
|+||.||+|+||..|+.+|++.|| +|++| |++++..+.++..|++.+++..+.+ ...-+|-++||.. .+.+
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~gh----dvV~y-D~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~ 75 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGH----DVVGY-DVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDA 75 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCC----eEEEE-cCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHH
Confidence 689999999999999999999999 99999 9999999999999987777766654 4578999999987 6788
Q ss_pred HHHHHhhccccccCCcccCC-----CCccc--HHHHHH---HcC-CCcEEEEecCcccc-ccCcceEeecCCCCCHHHHH
Q 023866 87 AVITEEAFGFCCCRSEIERP-----SGLQR--WSRWVE---WTG-HSRFIRVMPNTPSA-VGEAATVMSLGGTATEEDGE 154 (276)
Q Consensus 87 vl~~~~~~~~~~~~~~l~~~-----~g~~~--~~~l~~---~l~-~~~vv~~~p~~~~~-~~~g~~~i~~~~~~~~~~~~ 154 (276)
++.++ .+.++.. .|- + .+.+++ +.. +.+++.+-.....+ ...|.+.+..+ +++.++
T Consensus 76 vi~~l--------a~~L~~GDivIDGGN-S~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG---~~~a~~ 143 (300)
T COG1023 76 VIDDL--------APLLSAGDIVIDGGN-SNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYCLMIGG---DEEAVE 143 (300)
T ss_pred HHHHH--------HhhcCCCCEEEECCc-cchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCceEEecC---cHHHHH
Confidence 99888 6666654 232 1 122322 222 45666554332222 23577777765 789999
Q ss_pred HHHHHhhhcCc--e--EEcCCCCchhhhhhcCchHH-------HHHHHHHHHHHHHH---H--cCCCHHHHHHHHHH-HH
Q 023866 155 LIGKLFGSVGK--I--WRADEKLFDAITGLSGSGPA-------YIFLAIEALADGGV---A--AGLPRELALGLASQ-TV 217 (276)
Q Consensus 155 ~v~~ll~~~G~--~--~~~~e~~~~~~~a~~g~~p~-------~~~~~~~~l~~~~~---~--~Gl~~~~a~~~~~~-~~ 217 (276)
.++++|+.+.. . .++++ +|++.. .=|.++++++|... + ..+|.++.-++-.+ +.
T Consensus 144 ~~~pif~~lA~ge~Gyl~~Gp---------~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSV 214 (300)
T COG1023 144 RLEPIFKALAPGEDGYLYCGP---------SGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSV 214 (300)
T ss_pred HHHHHHHhhCcCcCccccccC---------CCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcch
Confidence 99999998863 2 34566 454421 12557778877642 3 44555554443222 22
Q ss_pred HHH-----HHHHHhcCCChHHHHHhcCCCC
Q 023866 218 LGA-----ASMVTKSGKHPGQLKDDVASPG 242 (276)
Q Consensus 218 ~g~-----~~~~~~~~~~~~~l~~~v~sp~ 242 (276)
.++ +.-+.+...+.+++...+.+.|
T Consensus 215 IrSWLldLt~~Af~~d~~L~q~~g~v~dSG 244 (300)
T COG1023 215 IRSWLLDLTAEAFKKDPDLDQISGRVSDSG 244 (300)
T ss_pred HHHHHHHHHHHHHhhCCCHHHhcCeeccCC
Confidence 222 2222233346677777776543
No 78
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.50 E-value=8.5e-13 Score=106.25 Aligned_cols=148 Identities=18% Similarity=0.207 Sum_probs=100.7
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH------------------------cCceeccCchh
Q 023866 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES------------------------IGVKVLSDNNA 67 (276)
Q Consensus 12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~------------------------~g~~~~~~~~~ 67 (276)
||+|||+|.||..+|..+..+|+ +|++| |++++.++...+ ..+...++..+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~----~V~l~-d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~ 75 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY----EVTLY-DRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEE 75 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS----EEEEE--SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGG
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC----cEEEE-ECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHH
Confidence 79999999999999999999999 99999 999987643221 13455677777
Q ss_pred hhcCCCEEEEeeCcc-cH-HHHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcceEee
Q 023866 68 VVEYSDVVVFSVKPQ-VD-KAAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAATVMS 143 (276)
Q Consensus 68 ~~~~aDvI~lav~~~-~~-~~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~~i~ 143 (276)
++ +||+||-|++-. .+ ++++.++. ...+...++ +..+++ ++..|.+.++ ..+++.+|+-.|.....-+. +.
T Consensus 76 ~~-~adlViEai~E~l~~K~~~~~~l~--~~~~~~~ilasnTSsl-~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVE-vv 150 (180)
T PF02737_consen 76 AV-DADLVIEAIPEDLELKQELFAELD--EICPPDTILASNTSSL-SISELAAALSRPERFIGMHFFNPPHLMPLVE-VV 150 (180)
T ss_dssp GC-TESEEEE-S-SSHHHHHHHHHHHH--CCS-TTSEEEE--SSS--HHHHHTTSSTGGGEEEEEE-SSTTT--EEE-EE
T ss_pred Hh-hhheehhhccccHHHHHHHHHHHH--HHhCCCceEEecCCCC-CHHHHHhccCcCceEEEEecccccccCceEE-Ee
Confidence 76 999999999754 23 57788773 111112222 333777 8899988876 36899999877776444344 45
Q ss_pred cCCCCCHHHHHHHHHHhhhcCce-EEc
Q 023866 144 LGGTATEEDGELIGKLFGSVGKI-WRA 169 (276)
Q Consensus 144 ~~~~~~~~~~~~v~~ll~~~G~~-~~~ 169 (276)
+++.++++.++.+..+++.+|+. +.+
T Consensus 151 ~~~~T~~~~~~~~~~~~~~~gk~pv~v 177 (180)
T PF02737_consen 151 PGPKTSPETVDRVRALLRSLGKTPVVV 177 (180)
T ss_dssp E-TTS-HHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 57789999999999999999976 554
No 79
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.50 E-value=7.7e-13 Score=119.93 Aligned_cols=190 Identities=15% Similarity=0.038 Sum_probs=112.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc-------------------CceeccCchhh
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-------------------GVKVLSDNNAV 68 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-------------------g~~~~~~~~~~ 68 (276)
|.++||+|||+|.||.+||..|.++|| +|++| |+++++.+.+..- |.....+ .
T Consensus 1 m~~~kI~VIGlG~~G~~~A~~La~~G~----~V~~~-D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~---~ 72 (415)
T PRK11064 1 MSFETISVIGLGYIGLPTAAAFASRQK----QVIGV-DINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATT---T 72 (415)
T ss_pred CCccEEEEECcchhhHHHHHHHHhCCC----EEEEE-eCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeec---c
Confidence 456899999999999999999999999 99999 9999999886531 1111111 1
Q ss_pred hcCCCEEEEeeCc----------ccHHHHHHHHhhccccccCCcccCCCCc--ccHHHHHHHcC----C--Cc-------
Q 023866 69 VEYSDVVVFSVKP----------QVDKAAVITEEAFGFCCCRSEIERPSGL--QRWSRWVEWTG----H--SR------- 123 (276)
Q Consensus 69 ~~~aDvI~lav~~----------~~~~~vl~~~~~~~~~~~~~~l~~~~g~--~~~~~l~~~l~----~--~~------- 123 (276)
+++||+||+|||. ..+.+++.++.. .++++.-++.. +++ .+.+.+...+. . .+
T Consensus 73 ~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~-~l~~g~iVI~~-STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~ 150 (415)
T PRK11064 73 PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAP-VLKKGDLVILE-STSPVGATEQMAEWLAEARPDLTFPQQAGEQA 150 (415)
T ss_pred cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHH-hCCCCCEEEEe-CCCCCCHHHHHHHHHHHhccCCcccccccCCC
Confidence 3479999999986 466677666621 11111112211 333 12333433221 1 01
Q ss_pred --EEEEecCccccccCc--------ceEeecCCCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHH
Q 023866 124 --FIRVMPNTPSAVGEA--------ATVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAI 192 (276)
Q Consensus 124 --vv~~~p~~~~~~~~g--------~~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~ 192 (276)
.+-.-|. -+..| ...++.+ .+++..+.+.++++.++.. ++++.-.-..++.+. .+.|.+..+
T Consensus 151 ~f~v~~~PE---~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~--~N~~~a~~i 223 (415)
T PRK11064 151 DINIAYCPE---RVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLT--ENSFRDVNI 223 (415)
T ss_pred CeEEEECCC---ccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHH--HHHHHHHHH
Confidence 0111221 11111 1233433 3788899999999999864 555543333344433 244544444
Q ss_pred HHH---HHHHHHcCCCHHHHHHHHH
Q 023866 193 EAL---ADGGVAAGLPRELALGLAS 214 (276)
Q Consensus 193 ~~l---~~~~~~~Gl~~~~a~~~~~ 214 (276)
..+ ...+.+.|+|.++..+.+.
T Consensus 224 a~~nE~~~lae~~GiD~~~v~~~~~ 248 (415)
T PRK11064 224 AFANELSLICADQGINVWELIRLAN 248 (415)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHhc
Confidence 444 3446789999988776654
No 80
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.49 E-value=1e-11 Score=113.22 Aligned_cols=182 Identities=13% Similarity=0.072 Sum_probs=119.8
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc-----CceeccCchhhhcC---CCEEEEeeCcc-cHHHHHHHH
Q 023866 21 MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-----GVKVLSDNNAVVEY---SDVVVFSVKPQ-VDKAAVITE 91 (276)
Q Consensus 21 mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-----g~~~~~~~~~~~~~---aDvI~lav~~~-~~~~vl~~~ 91 (276)
||..|+++|+++|| +|.+| ||++++.+.+.+. |+..+.++.++++. +|+||++||.. .+++|+.++
T Consensus 1 MG~~mA~nL~~~G~----~V~v~-nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l 75 (459)
T PRK09287 1 MGKNLALNIASHGY----TVAVY-NRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQL 75 (459)
T ss_pred CcHHHHHHHHhCCC----eEEEE-CCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHH
Confidence 89999999999999 99999 9999999999873 47888899998874 89999999865 688998777
Q ss_pred hhccccccCCcccCCCCc-ccHHHHHHHcC--CCcEEEEe-cCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCc-e
Q 023866 92 EAFGFCCCRSEIERPSGL-QRWSRWVEWTG--HSRFIRVM-PNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGK-I 166 (276)
Q Consensus 92 ~~~~~~~~~~~l~~~~g~-~~~~~l~~~l~--~~~vv~~~-p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~-~ 166 (276)
. ..+.++.-++...+.. .......+.+. +.+++.+- ...+.....|.++++.| +++.++.++++|+.++. .
T Consensus 76 ~-~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~siM~GG---~~~a~~~~~piL~~ia~~~ 151 (459)
T PRK09287 76 L-PLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGPSIMPGG---QKEAYELVAPILEKIAAKV 151 (459)
T ss_pred H-hcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCEEEEeC---CHHHHHHHHHHHHHHhhhh
Confidence 2 1111111122221112 01122223332 34455431 11222223566655544 79999999999999984 2
Q ss_pred -------EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHH---H-HcCCCHHHHHHHH
Q 023866 167 -------WRADEKLFDAITGLSGSGPAYIFLAIEALADGG---V-AAGLPRELALGLA 213 (276)
Q Consensus 167 -------~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~---~-~~Gl~~~~a~~~~ 213 (276)
.++++.---.+..+. .+.+.+..++++.|+. . +.|++.++..+++
T Consensus 152 ~~g~~c~~~vG~~GaGh~vKmv--hN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~ 207 (459)
T PRK09287 152 EDGEPCVTYIGPDGAGHYVKMV--HNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVF 207 (459)
T ss_pred cCCCCceeeeCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 678875333333332 2345566777888874 3 4799999888877
No 81
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.46 E-value=7.7e-13 Score=104.28 Aligned_cols=114 Identities=16% Similarity=0.235 Sum_probs=84.1
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc--------------CceeccCchhhhcCCCEEEE
Q 023866 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------------GVKVLSDNNAVVEYSDVVVF 77 (276)
Q Consensus 12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--------------g~~~~~~~~~~~~~aDvI~l 77 (276)
||+|||+|+||.++|..|.++|+ +|++| .|+++..+.+.+. .+.+++|.+++++++|+||+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~----~V~l~-~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iii 75 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH----EVTLW-GRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIII 75 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE----EEEEE-TSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcCC----EEEEE-eccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEe
Confidence 79999999999999999999999 99999 9999998888761 23456778889999999999
Q ss_pred eeCcccHHHHHHHHhhccccccCCcccCC-------CCcc------cHHHHHHHcCCCcEE-EEecCccccccCc
Q 023866 78 SVKPQVDKAAVITEEAFGFCCCRSEIERP-------SGLQ------RWSRWVEWTGHSRFI-RVMPNTPSAVGEA 138 (276)
Q Consensus 78 av~~~~~~~vl~~~~~~~~~~~~~~l~~~-------~g~~------~~~~l~~~l~~~~vv-~~~p~~~~~~~~g 138 (276)
+||.+.++++++++ ++++... .|+. -.+.+++.++..++. -.-|+++.++..+
T Consensus 76 avPs~~~~~~~~~l--------~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei~~~ 142 (157)
T PF01210_consen 76 AVPSQAHREVLEQL--------APYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEIAEG 142 (157)
T ss_dssp -S-GGGHHHHHHHH--------TTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHHHTT
T ss_pred cccHHHHHHHHHHH--------hhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHHHcC
Confidence 99999999999999 5555333 4440 125677777754332 2347777776555
No 82
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.46 E-value=1e-11 Score=108.37 Aligned_cols=237 Identities=14% Similarity=0.122 Sum_probs=142.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc-CceeccC-----------chhhhcCCCEEEE
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-GVKVLSD-----------NNAVVEYSDVVVF 77 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-g~~~~~~-----------~~~~~~~aDvI~l 77 (276)
.|||+|||+|.||+.++..|.++|+ +|+++ .|++++++.+++. |+.+.++ ..+....+|+||+
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~----~V~lv-~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv 76 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL----PVRLI-LRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLL 76 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC----CeEEE-EechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEE
Confidence 5799999999999999999999998 99999 9988888888763 5443211 1122357899999
Q ss_pred eeCcccHHHHHHHHhhccccccCCcccCC-------CCcccHHHHHHHcCCCcEEEEecCc------ccc---ccCcceE
Q 023866 78 SVKPQVDKAAVITEEAFGFCCCRSEIERP-------SGLQRWSRWVEWTGHSRFIRVMPNT------PSA---VGEAATV 141 (276)
Q Consensus 78 av~~~~~~~vl~~~~~~~~~~~~~~l~~~-------~g~~~~~~l~~~l~~~~vv~~~p~~------~~~---~~~g~~~ 141 (276)
|||.+++.+++..+ ++++.+. +|+...+.+++.++..+++.....+ |.. .+.|.+
T Consensus 77 ~vK~~~~~~al~~l--------~~~l~~~t~vv~lQNGv~~~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~- 147 (305)
T PRK05708 77 ACKAYDAEPAVASL--------AHRLAPGAELLLLQNGLGSQDAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFT- 147 (305)
T ss_pred ECCHHhHHHHHHHH--------HhhCCCCCEEEEEeCCCCCHHHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEE-
Confidence 99999999999888 5656543 8885567888888854555433222 211 122222
Q ss_pred eecCCCCCHHHHHHHHHHhhhcCceEEcCCC-------------CchhhhhhcCchHH-------HHHHHHHHHHHHHHH
Q 023866 142 MSLGGTATEEDGELIGKLFGSVGKIWRADEK-------------LFDAITGLSGSGPA-------YIFLAIEALADGGVA 201 (276)
Q Consensus 142 i~~~~~~~~~~~~~v~~ll~~~G~~~~~~e~-------------~~~~~~a~~g~~p~-------~~~~~~~~l~~~~~~ 201 (276)
..+.. +.+..+.+.++|+..|.....+++ -++.++++.++... .+..++..+.+.+.+
T Consensus 148 -~~G~~-~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a 225 (305)
T PRK05708 148 -WLGDP-RNPTAPAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRR 225 (305)
T ss_pred -EEcCC-CCcchHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHH
Confidence 22321 234456777888888865444443 25666777654332 233334444445667
Q ss_pred cCCCH--HHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHH-----HHHHHhCChHHHHHHHHHHHH
Q 023866 202 AGLPR--ELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG-----IHELEKSGFRGILMNAVVAAA 269 (276)
Q Consensus 202 ~Gl~~--~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~~-----l~~l~~~~~~~~~~~a~~~~~ 269 (276)
.|++. +...+.+......+ ....++++.|.. ..+-+-++. ++.-++.|+.....+.+...+
T Consensus 226 ~G~~~~~~~~~~~~~~~~~~~------~~~~sSM~qD~~-~gR~tEid~i~G~vvr~a~~~Gv~~P~~~~l~~~v 293 (305)
T PRK05708 226 CGQPAAAANLHEEVQRVIQAT------AANYSSMYQDVR-AGRRTEISYLLGYACRAADRHGLPLPRLQHLQQRL 293 (305)
T ss_pred cCCCccHHHHHHHHHHHHHhc------cCCCcHHHHHHH-cCCceeehhhhhHHHHHHHHcCCCCchHHHHHHHH
Confidence 88753 33333333222111 122345555544 222222233 334466687777776665443
No 83
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.42 E-value=2.3e-11 Score=107.87 Aligned_cols=157 Identities=15% Similarity=0.127 Sum_probs=105.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCC-------CCCCCeEEEEeCCCHH-----HHHHHHHc--------------Cceec
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSG-------VLPPDRICTAVHSNLK-----RRDAFESI--------------GVKVL 62 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g-------~~~~~~V~v~~~r~~~-----~~~~l~~~--------------g~~~~ 62 (276)
+.+||+|||+|.||+++|..|.+.| + +|.+| .|+++ ..+.+.+. ++..+
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~----~V~lw-~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~t 84 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHN----EVRMW-VLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAV 84 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCC----eEEEE-EecccccchHHHHHHHhcCCCcccCCCCcCCCceEEe
Confidence 4589999999999999999999887 5 99999 88875 25555531 24456
Q ss_pred cCchhhhcCCCEEEEeeCcccHHHHHHHHhhc-cccccCCcccCCCCcc--------cHHHHHHHcCCCcEE-EEecCcc
Q 023866 63 SDNNAVVEYSDVVVFSVKPQVDKAAVITEEAF-GFCCCRSEIERPSGLQ--------RWSRWVEWTGHSRFI-RVMPNTP 132 (276)
Q Consensus 63 ~~~~~~~~~aDvI~lav~~~~~~~vl~~~~~~-~~~~~~~~l~~~~g~~--------~~~~l~~~l~~~~vv-~~~p~~~ 132 (276)
+|..++++++|+||++|||+.+++++.++... .+.+...+++..+|+. -.+.+++.++. ++. -.-|+++
T Consensus 85 sdl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~-~~~~LsGPs~A 163 (365)
T PTZ00345 85 SDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGI-PCCALSGANVA 163 (365)
T ss_pred cCHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCC-CeEEEECCCHH
Confidence 77778899999999999999999999998310 1111112343335551 12445666653 432 3458888
Q ss_pred ccccCcc-eEeecCCCCCHHHHHHHHHHhhhcCceEEcCCC
Q 023866 133 SAVGEAA-TVMSLGGTATEEDGELIGKLFGSVGKIWRADEK 172 (276)
Q Consensus 133 ~~~~~g~-~~i~~~~~~~~~~~~~v~~ll~~~G~~~~~~e~ 172 (276)
.++..+. +.++.+. .+.+..+.++.+|+.=-..++.++|
T Consensus 164 ~Eva~~~pt~~vias-~~~~~a~~~~~lf~~~~frvy~s~D 203 (365)
T PTZ00345 164 NDVAREEFSEATIGC-EDKDDALIWQRLFDRPYFKINCVPD 203 (365)
T ss_pred HHHHcCCCcEEEEEe-CCHHHHHHHHHHhCCCcEEEEEcCC
Confidence 8876653 2222221 2677788889998754444566655
No 84
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.41 E-value=4.4e-11 Score=102.85 Aligned_cols=201 Identities=15% Similarity=0.147 Sum_probs=126.4
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHH
Q 023866 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDK 85 (276)
Q Consensus 6 ~~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~ 85 (276)
.....++|||||+|.||.++|++|...|+ +|+++ +|.....+.+...|.... +..+++++||+|++++|....+
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~----~ViV~-~r~~~s~~~A~~~G~~v~-sl~Eaak~ADVV~llLPd~~t~ 85 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGV----EVVVG-VRPGKSFEVAKADGFEVM-SVSEAVRTAQVVQMLLPDEQQA 85 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcC----EEEEE-ECcchhhHHHHHcCCEEC-CHHHHHhcCCEEEEeCCChHHH
Confidence 34567899999999999999999999999 99999 776555455555687654 7889999999999999976556
Q ss_pred HHHH-HHhhccccccCCcccCC------CCcccHHHHHHHcC--CCcEEEEecCccccc-------cCcceE-eecCCCC
Q 023866 86 AAVI-TEEAFGFCCCRSEIERP------SGLQRWSRWVEWTG--HSRFIRVMPNTPSAV-------GEAATV-MSLGGTA 148 (276)
Q Consensus 86 ~vl~-~~~~~~~~~~~~~l~~~------~g~~~~~~l~~~l~--~~~vv~~~p~~~~~~-------~~g~~~-i~~~~~~ 148 (276)
.++. ++ .+.+.++ -|. ++. .....| +..++-+-|-.|... |.|+.. +......
T Consensus 86 ~V~~~ei--------l~~MK~GaiL~f~hgf-ni~-~~~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~ 155 (335)
T PRK13403 86 HVYKAEV--------EENLREGQMLLFSHGF-NIH-FGQINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDA 155 (335)
T ss_pred HHHHHHH--------HhcCCCCCEEEECCCc-cee-cCceeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECC
Confidence 7764 23 2333332 233 221 111222 345665566665432 456543 3333345
Q ss_pred CHHHHHHHHHHhhhcCce---EEcC----C---CCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 023866 149 TEEDGELIGKLFGSVGKI---WRAD----E---KLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVL 218 (276)
Q Consensus 149 ~~~~~~~v~~ll~~~G~~---~~~~----e---~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~ 218 (276)
+..+.+........+|.. +..+ | +.+..-..++|... .++.+-.|..+++|.++|.|+--..+=++
T Consensus 156 sg~a~~~ala~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~~----~li~~gfe~lveaGy~pe~Ayfe~~he~k 231 (335)
T PRK13403 156 TGTALHVALAYAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGGVT----ALVKAGFETLTEGGYRPEIAYFECLHELK 231 (335)
T ss_pred CCcHHHHHHHHHHHcCCCceeEEecchHHHHhhhhcccchhhHHHHH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 666788888999999942 2211 2 23333445554333 33445555667899999988754444444
Q ss_pred HHHHHHHh
Q 023866 219 GAASMVTK 226 (276)
Q Consensus 219 g~~~~~~~ 226 (276)
-...++.+
T Consensus 232 li~dli~e 239 (335)
T PRK13403 232 LIVDLMYE 239 (335)
T ss_pred HHHHHHHH
Confidence 44555543
No 85
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=99.39 E-value=1.3e-11 Score=104.87 Aligned_cols=160 Identities=16% Similarity=0.161 Sum_probs=116.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhc-CCCEEEEeeCcccHHHH
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE-YSDVVVFSVKPQVDKAA 87 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~aDvI~lav~~~~~~~v 87 (276)
...+|||||.|+||.-+|..|.++|| .+.++ +|+. --+..++.|....+.+.++++ ..|+|++||....++.+
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh----~li~h-sRsd-yssaa~~yg~~~ft~lhdlcerhpDvvLlctsilsieki 124 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGH----GLICH-SRSD-YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSILSIEKI 124 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCc----eeEec-Ccch-hHHHHHHhcccccccHHHHHhcCCCEEEEEehhhhHHHH
Confidence 35789999999999999999999999 99999 9875 333444477766666666654 69999999999999999
Q ss_pred HHHHhhccccccCCcccCC---CCcc-----cHHHHHHHcC-CCcEEEEecCcccc-cc---CcceEeecC-----CCCC
Q 023866 88 VITEEAFGFCCCRSEIERP---SGLQ-----RWSRWVEWTG-HSRFIRVMPNTPSA-VG---EAATVMSLG-----GTAT 149 (276)
Q Consensus 88 l~~~~~~~~~~~~~~l~~~---~g~~-----~~~~l~~~l~-~~~vv~~~p~~~~~-~~---~g~~~i~~~-----~~~~ 149 (276)
+... ++. .+..+ .|+. ..+-+.+++| +..++.+||.+... +. +|...++-. ....
T Consensus 125 laty---pfq----rlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r 197 (480)
T KOG2380|consen 125 LATY---PFQ----RLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASR 197 (480)
T ss_pred HHhc---Cch----hhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCceEEEEeeccccccc
Confidence 9876 221 02111 2221 2356778888 68899999985443 32 344333321 1233
Q ss_pred HHHHHHHHHHhhhcCce-EEcCCCCchhhhhhc
Q 023866 150 EEDGELIGKLFGSVGKI-WRADEKLFDAITGLS 181 (276)
Q Consensus 150 ~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~ 181 (276)
+|..+.+.++|.+.|.. ++++-++||.++|-+
T Consensus 198 ~ercE~fleIf~cegckmVemS~eeHDkiaAds 230 (480)
T KOG2380|consen 198 PERCEFFLEIFACEGCKMVEMSYEEHDKIAADS 230 (480)
T ss_pred hHHHHHHHHHHHhcCCeEEEEEeecccccccch
Confidence 78999999999999965 999999999998864
No 86
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.37 E-value=3.9e-11 Score=108.95 Aligned_cols=191 Identities=15% Similarity=0.111 Sum_probs=108.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce----------------eccCchhhhcCCC
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK----------------VLSDNNAVVEYSD 73 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~----------------~~~~~~~~~~~aD 73 (276)
.|||||||+|.||..||..|.+ || +|++| |+++++.+.+.+ |.. .+++..+++++||
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~~----~V~g~-D~~~~~ve~l~~-G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~ad 78 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-SR----QVVGF-DVNKKRILELKN-GVDVNLETTEEELREARYLKFTSEIEKIKECN 78 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-CC----EEEEE-eCCHHHHHHHHC-cCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCC
Confidence 4899999999999999999776 68 99999 999999999883 321 2344556789999
Q ss_pred EEEEeeCcc-------cHHHHH---HHHhhccccccCCcccCCCCc--c-cHHHHHHHcC--------CCcEEEEecCcc
Q 023866 74 VVVFSVKPQ-------VDKAAV---ITEEAFGFCCCRSEIERPSGL--Q-RWSRWVEWTG--------HSRFIRVMPNTP 132 (276)
Q Consensus 74 vI~lav~~~-------~~~~vl---~~~~~~~~~~~~~~l~~~~g~--~-~~~~l~~~l~--------~~~vv~~~p~~~ 132 (276)
++|+|||.. ++..++ ..+.. .++++.-++.. +++ . +.+.++..+. ....+..-|..-
T Consensus 79 vvii~Vptp~~~~~~~dl~~v~~a~~~i~~-~l~~g~lVI~~-STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v 156 (425)
T PRK15182 79 FYIITVPTPINTYKQPDLTPLIKASETVGT-VLNRGDIVVYE-STVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERI 156 (425)
T ss_pred EEEEEcCCCCCCCCCcchHHHHHHHHHHHH-hcCCCCEEEEe-cCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcC
Confidence 999999732 334444 34411 11111112211 333 0 2222222221 112233333211
Q ss_pred cc---cc--CcceEeecCCCCCHHHHHHHHHHhhhcC--ceEEcCCCCchhhhhhcCchHHHHHHHHH---HHHHHHHHc
Q 023866 133 SA---VG--EAATVMSLGGTATEEDGELIGKLFGSVG--KIWRADEKLFDAITGLSGSGPAYIFLAIE---ALADGGVAA 202 (276)
Q Consensus 133 ~~---~~--~g~~~i~~~~~~~~~~~~~v~~ll~~~G--~~~~~~e~~~~~~~a~~g~~p~~~~~~~~---~l~~~~~~~ 202 (276)
.. .. .....++.| .+++..+.+.++++.+. ..++++.-.-..++.+. .+.|.+..+. .+...+.+.
T Consensus 157 ~~G~a~~~~~~~~riv~G--~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~--~N~~~av~Ia~~NE~a~lae~~ 232 (425)
T PRK15182 157 NPGDKKHRLTNIKKITSG--STAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVI--ENTQRDLNIALVNELAIIFNRL 232 (425)
T ss_pred CCCcccccccCCCeEEEC--CCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 11 00 112224434 35777889999999885 23555443333333333 2445444333 344456799
Q ss_pred CCCHHHHHHHH
Q 023866 203 GLPRELALGLA 213 (276)
Q Consensus 203 Gl~~~~a~~~~ 213 (276)
|+|.++..+.+
T Consensus 233 GiD~~~v~~a~ 243 (425)
T PRK15182 233 NIDTEAVLRAA 243 (425)
T ss_pred CcCHHHHHHHh
Confidence 99999887763
No 87
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.37 E-value=6.1e-11 Score=114.32 Aligned_cols=153 Identities=20% Similarity=0.097 Sum_probs=112.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH-----------Hc-------------CceeccC
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE-----------SI-------------GVKVLSD 64 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~-----------~~-------------g~~~~~~ 64 (276)
...||+|||+|.||..||..+..+|+ +|+++ |++++.++... +. .++.+++
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~----~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 386 (715)
T PRK11730 312 PVKQAAVLGAGIMGGGIAYQSASKGV----PVIMK-DINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLD 386 (715)
T ss_pred ccceEEEECCchhHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCC
Confidence 45789999999999999999999999 99999 99998765321 11 2334444
Q ss_pred chhhhcCCCEEEEeeCcc-cH-HHHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcce
Q 023866 65 NNAVVEYSDVVVFSVKPQ-VD-KAAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAAT 140 (276)
Q Consensus 65 ~~~~~~~aDvI~lav~~~-~~-~~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~ 140 (276)
. +.+++||+||-|++-+ .+ .+++.++. ...+...++ +..+++ ++..|.+.+. ..+++.+|+-.|...-.-+.
T Consensus 387 ~-~~~~~aDlViEav~E~l~~K~~vf~~l~--~~~~~~~ilasNTSsl-~i~~la~~~~~p~r~~g~Hff~P~~~~~lVE 462 (715)
T PRK11730 387 Y-AGFERVDVVVEAVVENPKVKAAVLAEVE--QKVREDTILASNTSTI-SISLLAKALKRPENFCGMHFFNPVHRMPLVE 462 (715)
T ss_pred H-HHhcCCCEEEecccCcHHHHHHHHHHHH--hhCCCCcEEEEcCCCC-CHHHHHhhcCCCccEEEEecCCcccccceEE
Confidence 4 5579999999999754 33 47777773 111112333 334777 8999998876 36899999877776554444
Q ss_pred EeecCCCCCHHHHHHHHHHhhhcCce-EEcCC
Q 023866 141 VMSLGGTATEEDGELIGKLFGSVGKI-WRADE 171 (276)
Q Consensus 141 ~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e 171 (276)
+..++.++++.++.+..+++.+|+. +.+.+
T Consensus 463 -vv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d 493 (715)
T PRK11730 463 -VIRGEKTSDETIATVVAYASKMGKTPIVVND 493 (715)
T ss_pred -eeCCCCCCHHHHHHHHHHHHHhCCceEEecC
Confidence 4467788999999999999999976 66654
No 88
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.36 E-value=6.7e-11 Score=113.85 Aligned_cols=154 Identities=18% Similarity=0.100 Sum_probs=114.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----------c-------------Cceecc
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------I-------------GVKVLS 63 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----------~-------------g~~~~~ 63 (276)
...+||+|||+|.||..||..+..+|+ +|+++ |++++.+++..+ . .++.+.
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~G~----~V~l~-d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 385 (714)
T TIGR02437 311 KDVKQAAVLGAGIMGGGIAYQSASKGT----PIVMK-DINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTL 385 (714)
T ss_pred cccceEEEECCchHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeC
Confidence 356789999999999999999999999 99999 999987654221 1 233444
Q ss_pred CchhhhcCCCEEEEeeCcc-cH-HHHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcc
Q 023866 64 DNNAVVEYSDVVVFSVKPQ-VD-KAAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAA 139 (276)
Q Consensus 64 ~~~~~~~~aDvI~lav~~~-~~-~~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~ 139 (276)
+. +.+++||+||-||+-+ .+ .+++.++. ...+...++ +..+++ ++..|++.+. ..+++..|+-.|...-.-+
T Consensus 386 ~~-~~~~~aDlViEav~E~l~~K~~vf~~l~--~~~~~~~ilasnTS~l-~i~~ia~~~~~p~r~ig~Hff~P~~~~~lv 461 (714)
T TIGR02437 386 SY-AGFDNVDIVVEAVVENPKVKAAVLAEVE--QHVREDAILASNTSTI-SISLLAKALKRPENFCGMHFFNPVHRMPLV 461 (714)
T ss_pred CH-HHhcCCCEEEEcCcccHHHHHHHHHHHH--hhCCCCcEEEECCCCC-CHHHHHhhcCCcccEEEEecCCCcccCceE
Confidence 44 4579999999999754 33 47777773 122212333 334777 8999988776 3689999988787665444
Q ss_pred eEeecCCCCCHHHHHHHHHHhhhcCce-EEcCC
Q 023866 140 TVMSLGGTATEEDGELIGKLFGSVGKI-WRADE 171 (276)
Q Consensus 140 ~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e 171 (276)
. ++.++.++++.++.+..++..+|+. +.+.+
T Consensus 462 E-vv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d 493 (714)
T TIGR02437 462 E-VIRGEKSSDETIATVVAYASKMGKTPIVVND 493 (714)
T ss_pred e-ecCCCCCCHHHHHHHHHHHHHcCCEEEEeCC
Confidence 4 4567788999999999999999986 66654
No 89
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.36 E-value=1e-10 Score=112.54 Aligned_cols=153 Identities=16% Similarity=0.098 Sum_probs=112.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHH-hCCCCCCCeEEEEeCCCHHHHHHHH-----------Hc-------------Cceecc
Q 023866 9 ESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKRRDAFE-----------SI-------------GVKVLS 63 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~-~~g~~~~~~V~v~~~r~~~~~~~l~-----------~~-------------g~~~~~ 63 (276)
+.+||+|||+|.||..||..+. ++|+ +|+++ |++++.++... +. .++.++
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~----~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 377 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGI----PVRIK-DINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTT 377 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeC
Confidence 4578999999999999999887 5899 99999 99987654321 11 233444
Q ss_pred CchhhhcCCCEEEEeeCcc-cH-HHHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcc
Q 023866 64 DNNAVVEYSDVVVFSVKPQ-VD-KAAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAA 139 (276)
Q Consensus 64 ~~~~~~~~aDvI~lav~~~-~~-~~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~ 139 (276)
+. +.+++||+||-|++-+ .+ .+++.++. ...+...++ +..+++ ++..|++.+. ..+++.+|+-.|...-.-+
T Consensus 378 ~~-~~~~~adlViEav~E~l~~K~~v~~~l~--~~~~~~~ilasnTS~l-~i~~la~~~~~p~r~~g~HffnP~~~~~lV 453 (699)
T TIGR02440 378 DY-RGFKDVDIVIEAVFEDLALKHQMVKDIE--QECAAHTIFASNTSSL-PIGQIAAAASRPENVIGLHYFSPVEKMPLV 453 (699)
T ss_pred Ch-HHhccCCEEEEeccccHHHHHHHHHHHH--hhCCCCcEEEeCCCCC-CHHHHHHhcCCcccEEEEecCCccccCceE
Confidence 54 5679999999999754 33 47777773 122212333 344788 8999988775 3689999987777655444
Q ss_pred eEeecCCCCCHHHHHHHHHHhhhcCce-EEcCC
Q 023866 140 TVMSLGGTATEEDGELIGKLFGSVGKI-WRADE 171 (276)
Q Consensus 140 ~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e 171 (276)
. ++.++.++++.++.+..+++.+|+. +++.+
T Consensus 454 E-vv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d 485 (699)
T TIGR02440 454 E-VIPHAGTSEQTIATTVALAKKQGKTPIVVAD 485 (699)
T ss_pred E-EeCCCCCCHHHHHHHHHHHHHcCCeEEEEcc
Confidence 4 4567888999999999999999986 66654
No 90
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.35 E-value=6.4e-11 Score=114.27 Aligned_cols=154 Identities=14% Similarity=0.067 Sum_probs=114.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----------c-------------Cceecc
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------I-------------GVKVLS 63 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----------~-------------g~~~~~ 63 (276)
.+..+|+|||+|.||..||..+..+|+ +|+++ |++++.+++..+ . .++.++
T Consensus 333 ~~i~~v~ViGaG~MG~gIA~~~a~~G~----~V~l~-d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 407 (737)
T TIGR02441 333 RPVKTLAVLGAGLMGAGIAQVSVDKGL----KTVLK-DATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTL 407 (737)
T ss_pred CcccEEEEECCCHhHHHHHHHHHhCCC----cEEEe-cCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC
Confidence 467899999999999999999999999 99999 999987654221 1 233444
Q ss_pred CchhhhcCCCEEEEeeCcc-cH-HHHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcc
Q 023866 64 DNNAVVEYSDVVVFSVKPQ-VD-KAAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAA 139 (276)
Q Consensus 64 ~~~~~~~~aDvI~lav~~~-~~-~~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~ 139 (276)
+. +.+++||+||-||+-+ .+ .+++.++. ...+...++ +..+++ ++..|++.+. ..+++..|+-.|...-.-+
T Consensus 408 ~~-~~~~~aDlViEAv~E~l~~K~~vf~~l~--~~~~~~~ilasNTSsl-~i~~la~~~~~p~r~ig~Hff~P~~~m~Lv 483 (737)
T TIGR02441 408 DY-SGFKNADMVIEAVFEDLSLKHKVIKEVE--AVVPPHCIIASNTSAL-PIKDIAAVSSRPEKVIGMHYFSPVDKMQLL 483 (737)
T ss_pred CH-HHhccCCeehhhccccHHHHHHHHHHHH--hhCCCCcEEEEcCCCC-CHHHHHhhcCCccceEEEeccCCcccCceE
Confidence 44 4578999999999754 33 47777773 111112233 334777 8999998876 3689999988787655444
Q ss_pred eEeecCCCCCHHHHHHHHHHhhhcCce-EEcCC
Q 023866 140 TVMSLGGTATEEDGELIGKLFGSVGKI-WRADE 171 (276)
Q Consensus 140 ~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e 171 (276)
. ++.++.++++.++.+..+++.+|+. +++.+
T Consensus 484 E-vv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d 515 (737)
T TIGR02441 484 E-IITHDGTSKDTLASAVAVGLKQGKVVIVVKD 515 (737)
T ss_pred E-EeCCCCCCHHHHHHHHHHHHHCCCeEEEECC
Confidence 4 4557788999999999999999986 66654
No 91
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.34 E-value=1.2e-10 Score=102.64 Aligned_cols=154 Identities=15% Similarity=0.067 Sum_probs=101.0
Q ss_pred eEEEEcccHHHHHHHHHHHhCC--------CCCCCeEEEEeCC-----CHHHHHHHHH--------cC------ceeccC
Q 023866 12 ILGFIGAGKMAESIAKGVAKSG--------VLPPDRICTAVHS-----NLKRRDAFES--------IG------VKVLSD 64 (276)
Q Consensus 12 kIgiIG~G~mG~~la~~l~~~g--------~~~~~~V~v~~~r-----~~~~~~~l~~--------~g------~~~~~~ 64 (276)
||+|||+|++|++||..|.++| + +|++| .| +++-.+.+.+ .| +..++|
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~----~V~lw-~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~d 75 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEE----SVRMW-VFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPD 75 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCc----eEEEE-EeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECC
Confidence 6999999999999999999888 7 99999 88 4454555543 12 335567
Q ss_pred chhhhcCCCEEEEeeCcccHHHHHHHHhhccccccCCcccCCCCcc--------cHHHHHHHcCCCcEE-EEecCccccc
Q 023866 65 NNAVVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQ--------RWSRWVEWTGHSRFI-RVMPNTPSAV 135 (276)
Q Consensus 65 ~~~~~~~aDvI~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~--------~~~~l~~~l~~~~vv-~~~p~~~~~~ 135 (276)
.+++++++|+||++||++.+++++.++.. -+++.+++++-..|+. -.+.+++.++ .++. -.-|+++.++
T Consensus 76 l~eal~~ADiIIlAVPs~~i~~vl~~l~~-~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~-~~~~~lsGP~~A~Ev 153 (342)
T TIGR03376 76 LVEAAKGADILVFVIPHQFLEGICKQLKG-HVKPNARAISCIKGLEVSKDGVKLLSDIIEEELG-IPCGVLSGANLANEV 153 (342)
T ss_pred HHHHHhcCCEEEEECChHHHHHHHHHHHh-hcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhC-CCeEEeeCcchHHHH
Confidence 78889999999999999999999999831 1111123333335551 1244566664 3433 3458888887
Q ss_pred cCcc-eE-eecCCCCC--HHHHHHHHHHhhhcCceEEcCCC
Q 023866 136 GEAA-TV-MSLGGTAT--EEDGELIGKLFGSVGKIWRADEK 172 (276)
Q Consensus 136 ~~g~-~~-i~~~~~~~--~~~~~~v~~ll~~~G~~~~~~e~ 172 (276)
..+. +. ...+.+.+ .+..+.++.+|+.=-..++.+.|
T Consensus 154 a~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~D 194 (342)
T TIGR03376 154 AKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDD 194 (342)
T ss_pred HcCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCC
Confidence 6664 22 22222111 67788888888753333555555
No 92
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.33 E-value=2.4e-10 Score=98.30 Aligned_cols=154 Identities=19% Similarity=0.175 Sum_probs=109.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH-----------HcC-------------ceecc
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE-----------SIG-------------VKVLS 63 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~-----------~~g-------------~~~~~ 63 (276)
+..+||++||+|.||+.||..+...|+ +|+++ |++++.+++.. +.| +..+.
T Consensus 1 ~~i~kv~ViGaG~MG~gIA~~~A~~G~----~V~l~-D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~ 75 (307)
T COG1250 1 MEIKKVAVIGAGVMGAGIAAVFALAGY----DVVLK-DISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTT 75 (307)
T ss_pred CCccEEEEEcccchhHHHHHHHhhcCC----ceEEE-eCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccC
Confidence 356899999999999999999999889 99999 99977654322 112 11222
Q ss_pred CchhhhcCCCEEEEeeCcc-cH-HHHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcc
Q 023866 64 DNNAVVEYSDVVVFSVKPQ-VD-KAAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAA 139 (276)
Q Consensus 64 ~~~~~~~~aDvI~lav~~~-~~-~~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~ 139 (276)
+. ..+++||+||-+++-. .+ ++++.++. ...++..++ +..+++ ++..+++.+. ..+++.+|+-.|.....-+
T Consensus 76 ~~-~~l~~~DlVIEAv~E~levK~~vf~~l~--~~~~~~aIlASNTSsl-~it~ia~~~~rper~iG~HFfNP~~~m~LV 151 (307)
T COG1250 76 DL-AALKDADLVIEAVVEDLELKKQVFAELE--ALAKPDAILASNTSSL-SITELAEALKRPERFIGLHFFNPVPLMPLV 151 (307)
T ss_pred ch-hHhccCCEEEEeccccHHHHHHHHHHHH--hhcCCCcEEeeccCCC-CHHHHHHHhCCchhEEEEeccCCCCcceeE
Confidence 22 2578999999999744 34 46777662 111112344 334888 9999988775 3689999987777665444
Q ss_pred eEeecCCCCCHHHHHHHHHHhhhcCce-EEcCC
Q 023866 140 TVMSLGGTATEEDGELIGKLFGSVGKI-WRADE 171 (276)
Q Consensus 140 ~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e 171 (276)
. +..+..++++.++.+.++.+.+|+. +...+
T Consensus 152 E-vI~g~~T~~e~~~~~~~~~~~igK~~vv~~D 183 (307)
T COG1250 152 E-VIRGEKTSDETVERVVEFAKKIGKTPVVVKD 183 (307)
T ss_pred E-EecCCCCCHHHHHHHHHHHHHcCCCCEeecC
Confidence 4 4567778999999999999999976 44444
No 93
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.31 E-value=1.3e-10 Score=104.32 Aligned_cols=186 Identities=11% Similarity=0.046 Sum_probs=109.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH----------------cCcee--ccCchhhhcCC
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----------------IGVKV--LSDNNAVVEYS 72 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----------------~g~~~--~~~~~~~~~~a 72 (276)
|||+|||+|.||..+|..|. .|| +|++| |+++++.+.+.+ .+... +.+..+++.+|
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~----~Vigv-D~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~a 74 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNH----EVVAL-DILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDA 74 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCC----cEEEE-ECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCC
Confidence 58999999999999997665 588 99999 999999988775 22233 33356778999
Q ss_pred CEEEEeeCcc-----------cHHHHHHHHhhccccccCCcccCCCCc--ccHHHHHHHcCCCcEEEEecCccccccCcc
Q 023866 73 DVVVFSVKPQ-----------VDKAAVITEEAFGFCCCRSEIERPSGL--QRWSRWVEWTGHSRFIRVMPNTPSAVGEAA 139 (276)
Q Consensus 73 DvI~lav~~~-----------~~~~vl~~~~~~~~~~~~~~l~~~~g~--~~~~~l~~~l~~~~vv~~~p~~~~~~~~g~ 139 (276)
|+||+|||.. .+++++.++.. ++++..++. .+.+ .+.+.+.+.+.... +..-|. -...|.
T Consensus 75 d~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~--~~~g~lVV~-~STv~pgtt~~l~~~~~~~~-v~~~PE---~l~~G~ 147 (388)
T PRK15057 75 DYVIIATPTDYDPKTNYFNTSSVESVIKDVVE--INPYAVMVI-KSTVPVGFTAAMHKKYRTEN-IIFSPE---FLREGK 147 (388)
T ss_pred CEEEEeCCCCCccCCCCcChHHHHHHHHHHHh--cCCCCEEEE-eeecCCchHHHHHHHhhcCc-EEECcc---cccCCc
Confidence 9999999743 46677777631 122122221 1333 12345555443222 333232 223332
Q ss_pred ---------eEeecCCCCCHHHHHHHHHHhhh--cCce-E-EcCCCCchhhhhhcCchHHHHHHH---HHHHHHHHHHcC
Q 023866 140 ---------TVMSLGGTATEEDGELIGKLFGS--VGKI-W-RADEKLFDAITGLSGSGPAYIFLA---IEALADGGVAAG 203 (276)
Q Consensus 140 ---------~~i~~~~~~~~~~~~~v~~ll~~--~G~~-~-~~~e~~~~~~~a~~g~~p~~~~~~---~~~l~~~~~~~G 203 (276)
.++.++ +++..+.+.++|.. ++.. . +++.-.-..++.+. .+.|.+.. ++.+...+.+.|
T Consensus 148 a~~d~~~p~rvv~G~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~--~N~~~a~~Ia~~NE~a~lae~~G 222 (388)
T PRK15057 148 ALYDNLHPSRIVIGE---RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLF--ANTYLAMRVAYFNELDSYAESLG 222 (388)
T ss_pred ccccccCCCEEEEEc---CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhC
Confidence 223332 45667778888754 5543 2 34443333333333 24454433 334445567899
Q ss_pred CCHHHHHHHHH
Q 023866 204 LPRELALGLAS 214 (276)
Q Consensus 204 l~~~~a~~~~~ 214 (276)
+|.++..+.+.
T Consensus 223 iD~~eV~~a~~ 233 (388)
T PRK15057 223 LNTRQIIEGVC 233 (388)
T ss_pred cCHHHHHHHhc
Confidence 99988876653
No 94
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.29 E-value=3.7e-11 Score=115.39 Aligned_cols=184 Identities=11% Similarity=0.094 Sum_probs=134.8
Q ss_pred EEEeeCcccHHHHHHHHhhccccccCCcccCC------CCcccH---HHHHHHcCC--CcEEEEecCcccccc-------
Q 023866 75 VVFSVKPQVDKAAVITEEAFGFCCCRSEIERP------SGLQRW---SRWVEWTGH--SRFIRVMPNTPSAVG------- 136 (276)
Q Consensus 75 I~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~------~g~~~~---~~l~~~l~~--~~vv~~~p~~~~~~~------- 136 (276)
||+|+|+..+.+++.++ .+++.++ .++ .. +.+.++++. .+++..||....+..
T Consensus 1 vila~Pv~~~~~~~~~~--------~~~~~~~~~vtDv~Sv-K~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~ 71 (673)
T PRK11861 1 VLLAAPVAQTGPLLARI--------APFLDASTIVTDAGST-KSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALA 71 (673)
T ss_pred CEEEcCHHHHHHHHHHH--------hhhCCCCcEEEecCcc-cHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhCh
Confidence 69999999999999998 5555443 233 22 444555653 358888887544321
Q ss_pred ---Cc-ceEeecCCCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 023866 137 ---EA-ATVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALG 211 (276)
Q Consensus 137 ---~g-~~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~ 211 (276)
+| ..++++.+..+++.++.+.++++.+|.. +.+++++||.++|++++.||+++. ++++...+.- +.+....
T Consensus 72 ~Lf~~~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~---~l~~~~~~~~-~~~~~~~ 147 (673)
T PRK11861 72 DLYVGRNVVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSF---ALVEQILGES-DAELKFS 147 (673)
T ss_pred hHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHH---HHHHHHhhcc-ChhHHHH
Confidence 22 3567777777888999999999999965 889999999999999999998765 3444332222 3455568
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHHHHHHhC--ChHHHHH----HHHHHHHHHHhh
Q 023866 212 LASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE 274 (276)
Q Consensus 212 ~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~~l~~l~~~--~~~~~~~----~a~~~~~~r~~~ 274 (276)
+..++|+++++++. .+|.+|.+.+.++.....+.|+.+.+. .++..+. +.+.+.++++++
T Consensus 148 ~a~~gfrd~tRia~---~~p~lw~di~~~N~~~i~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~ 213 (673)
T PRK11861 148 YAAGGFRDFTRIAA---SSPEMWRDVCLANRAALLDELDAYTAVLARLRAAIDAGDGAALEAVFARSRA 213 (673)
T ss_pred hcccchhccccccc---CCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999975 689999999999988888888887664 5555554 456666666654
No 95
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.29 E-value=3.6e-10 Score=108.97 Aligned_cols=153 Identities=17% Similarity=0.106 Sum_probs=112.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHH-hCCCCCCCeEEEEeCCCHHHHHHHH-----------Hc-------------Cceecc
Q 023866 9 ESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKRRDAFE-----------SI-------------GVKVLS 63 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~-~~g~~~~~~V~v~~~r~~~~~~~l~-----------~~-------------g~~~~~ 63 (276)
..+||+|||+|.||..||..+. .+|+ +|+++ |++++.+++.. +. .+..++
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~----~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 382 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGL----PVRIK-DINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTT 382 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeC
Confidence 4678999999999999999998 8899 99999 99988654421 11 233444
Q ss_pred CchhhhcCCCEEEEeeCcc-c-HHHHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcc
Q 023866 64 DNNAVVEYSDVVVFSVKPQ-V-DKAAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAA 139 (276)
Q Consensus 64 ~~~~~~~~aDvI~lav~~~-~-~~~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~ 139 (276)
+. +.+++||+||-|++-+ . -.+++.++.+ ..++..++ +..+++ ++..|++.+. ..+++.+|+-.|...-.-+
T Consensus 383 ~~-~~~~~aDlViEav~E~~~~K~~v~~~le~--~~~~~~ilasnTS~l-~i~~la~~~~~p~r~ig~Hff~P~~~~~lV 458 (708)
T PRK11154 383 DY-RGFKHADVVIEAVFEDLALKQQMVAEVEQ--NCAPHTIFASNTSSL-PIGQIAAAAARPEQVIGLHYFSPVEKMPLV 458 (708)
T ss_pred Ch-HHhccCCEEeecccccHHHHHHHHHHHHh--hCCCCcEEEECCCCC-CHHHHHHhcCcccceEEEecCCccccCceE
Confidence 54 5679999999999754 3 3477777731 11112333 334777 8999988776 3689999988777655444
Q ss_pred eEeecCCCCCHHHHHHHHHHhhhcCce-EEcCC
Q 023866 140 TVMSLGGTATEEDGELIGKLFGSVGKI-WRADE 171 (276)
Q Consensus 140 ~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e 171 (276)
. +..++.++++..+.+..+++.+|+. +.+.+
T Consensus 459 E-vv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d 490 (708)
T PRK11154 459 E-VIPHAKTSAETIATTVALAKKQGKTPIVVRD 490 (708)
T ss_pred E-EECCCCCCHHHHHHHHHHHHHcCCceEEEec
Confidence 4 4567889999999999999999985 66644
No 96
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=99.23 E-value=7.8e-11 Score=92.14 Aligned_cols=104 Identities=18% Similarity=0.255 Sum_probs=81.5
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCc--------------hhhhcCCCEEEEe
Q 023866 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN--------------NAVVEYSDVVVFS 78 (276)
Q Consensus 13 IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~--------------~~~~~~aDvI~la 78 (276)
|+|+|+|.||..+|..|.++|+ +|+++ .|++ +.+.+++.|+.+.... .+..+.+|+||+|
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~----~V~l~-~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~ 74 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH----DVTLV-SRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVA 74 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC----EEEEE-ESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-
T ss_pred CEEECcCHHHHHHHHHHHHCCC----ceEEE-Eccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEE
Confidence 7899999999999999999999 99999 8988 8888887666543221 1346789999999
Q ss_pred eCcccHHHHHHHHhhccccccCCcccCC-------CCcccHHHHHHHcCCCcEEEEecC
Q 023866 79 VKPQVDKAAVITEEAFGFCCCRSEIERP-------SGLQRWSRWVEWTGHSRFIRVMPN 130 (276)
Q Consensus 79 v~~~~~~~vl~~~~~~~~~~~~~~l~~~-------~g~~~~~~l~~~l~~~~vv~~~p~ 130 (276)
||..++++++..+ ++++.+. +|+...+.+++.++..+++..+..
T Consensus 75 vKa~~~~~~l~~l--------~~~~~~~t~iv~~qNG~g~~~~l~~~~~~~~v~~g~~~ 125 (151)
T PF02558_consen 75 VKAYQLEQALQSL--------KPYLDPNTTIVSLQNGMGNEEVLAEYFPRPRVLGGVTT 125 (151)
T ss_dssp SSGGGHHHHHHHH--------CTGEETTEEEEEESSSSSHHHHHHCHSTGSGEEEEEEE
T ss_pred ecccchHHHHHHH--------hhccCCCcEEEEEeCCCCcHHHHHHHcCCCcEEEEEEe
Confidence 9999999999998 5555543 888556788888875566666544
No 97
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.20 E-value=4.4e-09 Score=88.68 Aligned_cols=220 Identities=17% Similarity=0.150 Sum_probs=143.0
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-HHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHH
Q 023866 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDK 85 (276)
Q Consensus 7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~ 85 (276)
..+.+||+|||+|.=|.+-+.+|+++|+ +|++- -|.. ...+.+.+.|..+. +..|+++.+|+|++-+|+..-.
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGl----nViiG-lr~g~~s~~kA~~dGf~V~-~v~ea~k~ADvim~L~PDe~q~ 88 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGL----NVIIG-LRKGSSSWKKAKEDGFKVY-TVEEAAKRADVVMILLPDEQQK 88 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCC----cEEEE-ecCCchhHHHHHhcCCEee-cHHHHhhcCCEEEEeCchhhHH
Confidence 4567899999999999999999999999 88876 4433 33666777898875 6889999999999999999988
Q ss_pred HHHH-HHhhccccccCCcccCC------CCcccHHHHHHHcC--CCcEEEEecCccccc-------cCcceE-eecCCCC
Q 023866 86 AAVI-TEEAFGFCCCRSEIERP------SGLQRWSRWVEWTG--HSRFIRVMPNTPSAV-------GEAATV-MSLGGTA 148 (276)
Q Consensus 86 ~vl~-~~~~~~~~~~~~~l~~~------~g~~~~~~l~~~l~--~~~vv~~~p~~~~~~-------~~g~~~-i~~~~~~ 148 (276)
+|++ ++ .|.+..+ -|. ++..- ...| +..++=+-|-.|... |.|+.. +......
T Consensus 89 ~vy~~~I--------~p~Lk~G~aL~FaHGf-Nihf~-~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~LiAV~qD~ 158 (338)
T COG0059 89 EVYEKEI--------APNLKEGAALGFAHGF-NIHFG-LIVPPKDVDVIMVAPKGPGHLVRREYKEGFGVPALIAVHQDA 158 (338)
T ss_pred HHHHHHh--------hhhhcCCceEEecccc-ceecc-eecCCccCcEEEEcCCCCcHHHHHHHHccCCceeEEEEEeCC
Confidence 9988 66 6777655 233 22111 1112 345555557666532 455543 3333445
Q ss_pred CHHHHHHHHHHhhhcCc--e-EEc----CC---CCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 023866 149 TEEDGELIGKLFGSVGK--I-WRA----DE---KLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVL 218 (276)
Q Consensus 149 ~~~~~~~v~~ll~~~G~--~-~~~----~e---~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~ 218 (276)
+....+....+...+|. . +.. .| +.+-.-+.++|.. ..++.+-.|..++.|.+++.|+.-+..-+.
T Consensus 159 sG~a~~~Ala~AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcGgl----~~li~agfetLvEaGy~PE~AyfE~lhE~k 234 (338)
T COG0059 159 SGKALDIALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGL----QALIKAGFETLVEAGYQPELAYFECLHELK 234 (338)
T ss_pred CchHHHHHHHHHHhcCCCccceEeeeeHHhhhcccccchhhhhhHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 66788888999999982 2 321 12 3344445555432 233444456667899999998776666555
Q ss_pred HHHHHHHhcC--------CChHHHHHhcCCCCchHH
Q 023866 219 GAASMVTKSG--------KHPGQLKDDVASPGGTTI 246 (276)
Q Consensus 219 g~~~~~~~~~--------~~~~~l~~~v~sp~g~t~ 246 (276)
-...++.+.| ++..++-+-+..|.=.+.
T Consensus 235 lIvdLiyegGi~~M~~siSnTAeyG~~~~gprii~~ 270 (338)
T COG0059 235 LIVDLIYEGGITNMRYSISNTAEYGDYTRGPRIIDA 270 (338)
T ss_pred HHHHHHHHhhHHHHHHhcCCHHHhcccccCceeecH
Confidence 5555554322 455666655655654443
No 98
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=99.15 E-value=5.3e-09 Score=93.56 Aligned_cols=203 Identities=16% Similarity=0.111 Sum_probs=133.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC------HHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN------LKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP 81 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~------~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~ 81 (276)
...++|+|||+|.+|.+.|.+|...|+ +|++- -|. .+..+.+.+.|..+ .+..++++.||+|++.+|+
T Consensus 34 LkgKtIaIIGyGSqG~AqAlNLrdSGv----nVvvg-lr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPD 107 (487)
T PRK05225 34 LKGKKIVIVGCGAQGLNQGLNMRDSGL----DISYA-LRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPD 107 (487)
T ss_pred hCCCEEEEEccCHHHHHHhCCCccccc----eeEEe-ccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCCh
Confidence 457899999999999999999999999 88855 333 34555666678766 5688999999999999998
Q ss_pred ccHHHHHHHHhhccccccCCcccCC------CCcccHHHHHHHcC-CCcEEEEecCccccc-------cCcceE-eecC-
Q 023866 82 QVDKAAVITEEAFGFCCCRSEIERP------SGLQRWSRWVEWTG-HSRFIRVMPNTPSAV-------GEAATV-MSLG- 145 (276)
Q Consensus 82 ~~~~~vl~~~~~~~~~~~~~~l~~~------~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~-------~~g~~~-i~~~- 145 (276)
..-..+..++ .+.+.++ -|- ++..-.-..| +..|+-+-|-.|... |.|+.. +...
T Consensus 108 t~q~~v~~~i--------~p~LK~Ga~L~fsHGF-ni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~Gvp~l~AV~~ 178 (487)
T PRK05225 108 KQHSDVVRAV--------QPLMKQGAALGYSHGF-NIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHP 178 (487)
T ss_pred HHHHHHHHHH--------HhhCCCCCEEEecCCc-eeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCCceEEEEEee
Confidence 8655666666 5555544 222 2211111112 456666667655431 455533 3223
Q ss_pred -CCCCHHHHHHHHHHhhhcCce---EEcC----C---CCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 023866 146 -GTATEEDGELIGKLFGSVGKI---WRAD----E---KLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLAS 214 (276)
Q Consensus 146 -~~~~~~~~~~v~~ll~~~G~~---~~~~----e---~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~ 214 (276)
...+....+.......++|.. +..+ | +.+-.-+.++|.. .....+..+..++.|.+++.|+..+.
T Consensus 179 ~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~E~~sDL~GEq~vLcG~~----~~~~~~~Fe~lve~G~~pe~A~k~~~ 254 (487)
T PRK05225 179 ENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGML----QAGSLLCFDKLVAEGTDPAYAEKLIQ 254 (487)
T ss_pred cCCCCchHHHHHHHHHHHhCCCccceeecchHHHHhhcchhhHHHHHhHH----HHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 345666788888898999843 2211 2 2333344454432 22344555667789999999999888
Q ss_pred HHHHHHHHHHHhcCC
Q 023866 215 QTVLGAASMVTKSGK 229 (276)
Q Consensus 215 ~~~~g~~~~~~~~~~ 229 (276)
.++...++++.+.|.
T Consensus 255 ~~~E~I~e~i~e~GI 269 (487)
T PRK05225 255 FGWETITEALKQGGI 269 (487)
T ss_pred hhHHHHHHHHHhccH
Confidence 888888887765553
No 99
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=99.14 E-value=2.8e-10 Score=88.05 Aligned_cols=140 Identities=17% Similarity=0.231 Sum_probs=86.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH-HHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHH
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAA 87 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~-~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~v 87 (276)
+.++|+|||+|..|.+.+.+|+++|+ +|.+. .|..+ ..+..++.|..+. +..|+++++|+|++.+|+....++
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~----~V~Vg-lr~~s~s~~~A~~~Gf~v~-~~~eAv~~aDvV~~L~PD~~q~~v 76 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGV----NVIVG-LREGSASWEKAKADGFEVM-SVAEAVKKADVVMLLLPDEVQPEV 76 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC-----EEEEE-E-TTCHHHHHHHHTT-ECC-EHHHHHHC-SEEEE-S-HHHHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCC----CEEEE-ecCCCcCHHHHHHCCCeec-cHHHHHhhCCEEEEeCChHHHHHH
Confidence 46899999999999999999999999 99988 67655 6677777898875 678899999999999999988888
Q ss_pred H-HHHhhccccccCCcccCC------CCcccHHHHHHHcC--CCcEEEEecCccccc-------cCcceEee-cCCCCCH
Q 023866 88 V-ITEEAFGFCCCRSEIERP------SGLQRWSRWVEWTG--HSRFIRVMPNTPSAV-------GEAATVMS-LGGTATE 150 (276)
Q Consensus 88 l-~~~~~~~~~~~~~~l~~~------~g~~~~~~l~~~l~--~~~vv~~~p~~~~~~-------~~g~~~i~-~~~~~~~ 150 (276)
+ +++ .|.+.++ -|. ++. .....| +..++-+.|..|... |.|+..++ .....+.
T Consensus 77 y~~~I--------~p~l~~G~~L~fahGf-ni~-~~~i~pp~~vdV~mvAPKgpG~~vR~~y~~G~Gvp~l~AV~qD~sg 146 (165)
T PF07991_consen 77 YEEEI--------APNLKPGATLVFAHGF-NIH-YGLIKPPKDVDVIMVAPKGPGHLVRREYVEGRGVPALIAVHQDASG 146 (165)
T ss_dssp HHHHH--------HHHS-TT-EEEESSSH-HHH-CTTS---TTSEEEEEEESSSCHHHHHHHHCCTS--EEEEEEE-SSS
T ss_pred HHHHH--------HhhCCCCCEEEeCCcc-hhh-cCcccCCCCCeEEEEecCCCChHHHHHHHcCCCceEEEEEEECCCc
Confidence 8 555 5566554 233 221 111111 345666667666432 44543322 2223344
Q ss_pred HHHHHHHHHhhhcC
Q 023866 151 EDGELIGKLFGSVG 164 (276)
Q Consensus 151 ~~~~~v~~ll~~~G 164 (276)
...+....+...+|
T Consensus 147 ~A~~~ala~A~~iG 160 (165)
T PF07991_consen 147 KAKELALAYAKAIG 160 (165)
T ss_dssp -HHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhC
Confidence 55666666666665
No 100
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.06 E-value=7.4e-10 Score=89.40 Aligned_cols=160 Identities=19% Similarity=0.152 Sum_probs=110.6
Q ss_pred CCCCCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----------c------------
Q 023866 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------I------------ 57 (276)
Q Consensus 1 ~~~~~~~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----------~------------ 57 (276)
|++..+..+++.|+|||+|.||+.||+--..+|+ +|+++ |++++.+.+..+ .
T Consensus 2 ~s~s~~~~~~~~V~ivGaG~MGSGIAQv~a~sg~----~V~l~-d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~ 76 (298)
T KOG2304|consen 2 MSASANMAEIKNVAIVGAGQMGSGIAQVAATSGL----NVWLV-DANEDALSRATKAISSSLKRVAKKKKADDPVALEEF 76 (298)
T ss_pred cccccccccccceEEEcccccchhHHHHHHhcCC----ceEEe-cCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHH
Confidence 5666677788899999999999999999999999 99999 999887655432 0
Q ss_pred ------CceeccCchhhhcCCCEEEEeeC-cccH-HHHHHHHhhccccccCCccc-CCCCcccHHHHHHHcC-CCcEEEE
Q 023866 58 ------GVKVLSDNNAVVEYSDVVVFSVK-PQVD-KAAVITEEAFGFCCCRSEIE-RPSGLQRWSRWVEWTG-HSRFIRV 127 (276)
Q Consensus 58 ------g~~~~~~~~~~~~~aDvI~lav~-~~~~-~~vl~~~~~~~~~~~~~~l~-~~~g~~~~~~l~~~l~-~~~vv~~ 127 (276)
.+..+++..+++.++|+||-++- .-++ +.++.++. +.++...++. ..+.+ .+.++...+. ..++.+.
T Consensus 77 v~~~l~ri~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~--~~ak~~~il~tNTSSl-~lt~ia~~~~~~srf~Gl 153 (298)
T KOG2304|consen 77 VDDTLDRIKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLD--KIAKSSTILATNTSSL-SLTDIASATQRPSRFAGL 153 (298)
T ss_pred HHHHHHHHHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHH--hhcccceEEeecccce-eHHHHHhhccChhhhcee
Confidence 12234566778888999998863 2233 46666663 2222123332 23556 7777777665 3567777
Q ss_pred ecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCceEEc
Q 023866 128 MPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRA 169 (276)
Q Consensus 128 ~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~~~~ 169 (276)
|-..|..+-+-+.+ ..++..+++.+..+..+-+.+|+..+.
T Consensus 154 HFfNPvPvMKLvEV-ir~~~TS~eTf~~l~~f~k~~gKttVa 194 (298)
T KOG2304|consen 154 HFFNPVPVMKLVEV-IRTDDTSDETFNALVDFGKAVGKTTVA 194 (298)
T ss_pred eccCCchhHHHhhh-hcCCCCCHHHHHHHHHHHHHhCCCcee
Confidence 75556555443443 345678899999999999999987444
No 101
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.03 E-value=3e-08 Score=86.44 Aligned_cols=185 Identities=15% Similarity=0.145 Sum_probs=116.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc-----CceeccCchhh---hcCCCEEEEeeC
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-----GVKVLSDNNAV---VEYSDVVVFSVK 80 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-----g~~~~~~~~~~---~~~aDvI~lav~ 80 (276)
....||+||+|.||+.++.++.++|| .|.+| ||++++.+.+.+. .+..+.+.+|. ++..--|+++|+
T Consensus 2 ~~~~iGviGLaVMG~NLaLNi~~~G~----~Vavy-NRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVk 76 (473)
T COG0362 2 MKADIGVIGLAVMGSNLALNIADHGY----TVAVY-NRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVK 76 (473)
T ss_pred CccceeeEehhhhhHHHHHHHHhcCc----eEEEE-eCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEe
Confidence 45689999999999999999999999 99999 9999999988762 34445566655 457889999998
Q ss_pred cc-cHHHHHHHHhhccccccCCcccCC-----CCc--c--cHHHHHHHcC-CCcEEEEecCccc-cccCcceEeecCCCC
Q 023866 81 PQ-VDKAAVITEEAFGFCCCRSEIERP-----SGL--Q--RWSRWVEWTG-HSRFIRVMPNTPS-AVGEAATVMSLGGTA 148 (276)
Q Consensus 81 ~~-~~~~vl~~~~~~~~~~~~~~l~~~-----~g~--~--~~~~l~~~l~-~~~vv~~~p~~~~-~~~~g~~~i~~~~~~ 148 (276)
.- .+..+++++ .|++..+ .|- . +....+++.. +..++.+--.... -...|..++.. .
T Consensus 77 AG~~VD~~I~~L--------~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSiMpG---G 145 (473)
T COG0362 77 AGTPVDAVIEQL--------LPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSIMPG---G 145 (473)
T ss_pred cCCcHHHHHHHH--------HhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCcCCC---C
Confidence 74 477888888 6777553 333 0 1223333322 3455553211111 11235555543 4
Q ss_pred CHHHHHHHHHHhhhcC------ce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHH----HcCCCHHHHHH
Q 023866 149 TEEDGELIGKLFGSVG------KI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGV----AAGLPRELALG 211 (276)
Q Consensus 149 ~~~~~~~v~~ll~~~G------~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~----~~Gl~~~~a~~ 211 (276)
+++..+.+.++|..+. .| .+++++---.+..+.-.|-- |.-++.+.|+.. -.|++.++.-+
T Consensus 146 ~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIE--YgDMQlIaE~Y~ilk~~lgls~~ei~~ 217 (473)
T COG0362 146 QKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIE--YGDMQLIAEAYDILKDGLGLSAEEIAE 217 (473)
T ss_pred CHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCch--HHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 8999999999998873 23 66777532222222211111 233445555431 36777665544
No 102
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.99 E-value=3.4e-08 Score=90.71 Aligned_cols=195 Identities=14% Similarity=0.072 Sum_probs=109.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC--CCCCCeEEEEeCCCHHHHHHHHHc-------------------CceeccCchhh
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSG--VLPPDRICTAVHSNLKRRDAFESI-------------------GVKVLSDNNAV 68 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g--~~~~~~V~v~~~r~~~~~~~l~~~-------------------g~~~~~~~~~~ 68 (276)
+|||+|||+|.+|..+|..|.++| + +|+++ |+++++.+.+++- .+..+++..++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~----~V~gv-D~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~ 75 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDI----EVVVV-DISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKH 75 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCC----eEEEE-ECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHH
Confidence 589999999999999999999885 6 79999 9999999886531 13345556677
Q ss_pred hcCCCEEEEeeC-cc--------------cHHHHHHHHhhccccccCCcccCCCCc--ccHHHHHHHcC----CCc-EEE
Q 023866 69 VEYSDVVVFSVK-PQ--------------VDKAAVITEEAFGFCCCRSEIERPSGL--QRWSRWVEWTG----HSR-FIR 126 (276)
Q Consensus 69 ~~~aDvI~lav~-~~--------------~~~~vl~~~~~~~~~~~~~~l~~~~g~--~~~~~l~~~l~----~~~-vv~ 126 (276)
+++||++|+||| |. .+.+++.++.. .++++.-++.. +.+ ++.+.+...+. +.. .+.
T Consensus 76 i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~-~l~~~~lVv~~-STvp~Gtt~~~~~~l~~~~~g~~f~v~ 153 (473)
T PLN02353 76 VAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIAD-VSKSDKIVVEK-STVPVKTAEAIEKILTHNSKGINFQIL 153 (473)
T ss_pred HhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHh-hCCCCcEEEEe-CCCCCChHHHHHHHHHhhCCCCCeEEE
Confidence 899999999995 22 35677777721 11111111111 222 12344444332 111 122
Q ss_pred EecCcc-----ccccCcc-eEeecCC--CCCHHHHHHHHHHhhhcCc--eEEcCCCCchhhhhhcCchHHHH---HHHHH
Q 023866 127 VMPNTP-----SAVGEAA-TVMSLGG--TATEEDGELIGKLFGSVGK--IWRADEKLFDAITGLSGSGPAYI---FLAIE 193 (276)
Q Consensus 127 ~~p~~~-----~~~~~g~-~~i~~~~--~~~~~~~~~v~~ll~~~G~--~~~~~e~~~~~~~a~~g~~p~~~---~~~~~ 193 (276)
..|.-- ..--... -++.++. ...++..+.+..+++.+-. .+....-.-..++.+. -++|. -.+++
T Consensus 154 ~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~--eN~~ra~~Iaf~N 231 (473)
T PLN02353 154 SNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLA--ANAFLAQRISSVN 231 (473)
T ss_pred ECCCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 333211 1000111 1222332 1114467888889888742 3333322222233322 13343 24567
Q ss_pred HHHHHHHHcCCCHHHHHHHH
Q 023866 194 ALADGGVAAGLPRELALGLA 213 (276)
Q Consensus 194 ~l~~~~~~~Gl~~~~a~~~~ 213 (276)
.|...+.+.|+|..+..+.+
T Consensus 232 Ela~lce~~giD~~eV~~~~ 251 (473)
T PLN02353 232 AMSALCEATGADVSQVSHAV 251 (473)
T ss_pred HHHHHHHHhCCCHHHHHHHh
Confidence 77777889999988766554
No 103
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.98 E-value=6.5e-08 Score=84.65 Aligned_cols=175 Identities=13% Similarity=0.053 Sum_probs=110.9
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEeCCCHHH-------HHH-----------HHHc-------------CceeccC--chh
Q 023866 21 MAESIAKGVAKSGVLPPDRICTAVHSNLKR-------RDA-----------FESI-------------GVKVLSD--NNA 67 (276)
Q Consensus 21 mG~~la~~l~~~g~~~~~~V~v~~~r~~~~-------~~~-----------l~~~-------------g~~~~~~--~~~ 67 (276)
||..||..+..+|+ +|+++ |++++. +++ +.+. .++.+.+ ..+
T Consensus 1 MG~giA~~~a~~G~----~V~l~-d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 75 (314)
T PRK08269 1 MGQGIALAFAFAGH----DVTLI-DFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAAD 75 (314)
T ss_pred CcHHHHHHHHhCCC----eEEEE-eCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHH
Confidence 89999999999999 99999 999842 111 1111 2333333 457
Q ss_pred hhcCCCEEEEeeCcc-cHH-HHHHHHhhccccccCCcc-cCCCCcccHHHHHHHcC-CCcEEEEecCccccccCcceEee
Q 023866 68 VVEYSDVVVFSVKPQ-VDK-AAVITEEAFGFCCCRSEI-ERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVGEAATVMS 143 (276)
Q Consensus 68 ~~~~aDvI~lav~~~-~~~-~vl~~~~~~~~~~~~~~l-~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~~g~~~i~ 143 (276)
++++||+||.||+.. +++ .++.++.+ ...+ ..++ +..+++ ++..|.+.+. ..+++.+|+-.|.....-+. +.
T Consensus 76 a~~~aD~ViEav~E~~~~K~~~f~~l~~-~~~~-~~ilaSntS~~-~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvE-Vv 151 (314)
T PRK08269 76 ALADADLVFEAVPEVLDAKREALRWLGR-HVDA-DAIIASTTSTF-LVTDLQRHVAHPERFLNAHWLNPAYLMPLVE-VS 151 (314)
T ss_pred HhccCCEEEECCcCCHHHHHHHHHHHHh-hCCC-CcEEEEccccC-CHHHHHhhcCCcccEEEEecCCccccCceEE-Ee
Confidence 789999999999754 444 45555521 1111 2233 333667 8888888775 35788888877765544333 45
Q ss_pred cCCCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHH
Q 023866 144 LGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLAS 214 (276)
Q Consensus 144 ~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~ 214 (276)
.++.++++.++.+.++++.+|+. +++++.. . + .....+...+.|+ +.+.|.++++..+++.
T Consensus 152 ~g~~t~~e~~~~~~~ll~~lGk~~v~v~d~~-G-f--------i~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~ 216 (314)
T PRK08269 152 PSDATDPAVVDRLAALLERIGKVPVVCGPSP-G-Y--------IVPRIQALAMNEAARMVEEGVASAEDIDKAIR 216 (314)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEecCCC-C-c--------chHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 67788999999999999999976 7776531 1 0 0111112222222 3456678887777665
No 104
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.95 E-value=4.1e-07 Score=79.95 Aligned_cols=237 Identities=16% Similarity=0.188 Sum_probs=138.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-------------------cC-ceeccCchhhhc
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------IG-VKVLSDNNAVVE 70 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~~ 70 (276)
|||.|||.|-+|...+..|.+.|| +|+.+ |.++++.+.+.+ .| +..++|..++++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GH----eVv~v-Did~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~ 75 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGH----EVVCV-DIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVK 75 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCC----eEEEE-eCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHh
Confidence 799999999999999999999999 99999 999999887763 12 556778888999
Q ss_pred CCCEEEEeeC--cc--------cHHHHHHHHhhccccccCCcccCCCCc--ccHHHHHHHcCC---CcEEEEecCccccc
Q 023866 71 YSDVVVFSVK--PQ--------VDKAAVITEEAFGFCCCRSEIERPSGL--QRWSRWVEWTGH---SRFIRVMPNTPSAV 135 (276)
Q Consensus 71 ~aDvI~lav~--~~--------~~~~vl~~~~~~~~~~~~~~l~~~~g~--~~~~~l~~~l~~---~~vv~~~p~~~~~~ 135 (276)
++|++|+||+ +. .++++.+++... + +...++-.++++ ++.+.+++.+.. .+-.....| |.-.
T Consensus 76 ~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~-~-~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~N-PEFL 152 (414)
T COG1004 76 DADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEI-L-DGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASN-PEFL 152 (414)
T ss_pred cCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhh-c-CCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecC-hHHh
Confidence 9999999994 21 356667776210 0 001122122444 123555554431 110111112 3323
Q ss_pred cCcce--------EeecCCCCCHHHHHHHHHHhhhc---CceEEcCCCCchhhhhhcCchHHHHH---HHHHHHHHHHHH
Q 023866 136 GEAAT--------VMSLGGTATEEDGELIGKLFGSV---GKIWRADEKLFDAITGLSGSGPAYIF---LAIEALADGGVA 201 (276)
Q Consensus 136 ~~g~~--------~i~~~~~~~~~~~~~v~~ll~~~---G~~~~~~e~~~~~~~a~~g~~p~~~~---~~~~~l~~~~~~ 201 (276)
++|.. -++.|. .++.+.+.+.+++..+ ...+....-.-..+..+. .++|++ .|++.+.+.+.+
T Consensus 153 REG~Av~D~~~PdRIViG~-~~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKya--aNafLAtKIsFiNEia~ice~ 229 (414)
T COG1004 153 REGSAVYDFLYPDRIVIGV-RSERAAAVLRELYAPFLRQDVPILFTDLREAELIKYA--ANAFLATKISFINEIANICEK 229 (414)
T ss_pred cCcchhhhccCCCeEEEcc-CChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 44421 122232 1333567777777665 333443332222233332 256665 367778888889
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCC----Cch-----HHHHHHHHHhCChHHHHHHHHHHHHHHH
Q 023866 202 AGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASP----GGT-----TIAGIHELEKSGFRGILMNAVVAAAKRS 272 (276)
Q Consensus 202 ~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp----~g~-----t~~~l~~l~~~~~~~~~~~a~~~~~~r~ 272 (276)
.|.|-++..+-+..--+ +-..+..| ||. |.+-+...++.+....+.+|+.+.-++-
T Consensus 230 ~g~D~~~V~~gIGlD~R---------------IG~~fl~aG~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~avv~vN~~q 294 (414)
T COG1004 230 VGADVKQVAEGIGLDPR---------------IGNHFLNAGFGYGGSCFPKDTKALIANAEELGYDPNLLEAVVEVNERR 294 (414)
T ss_pred hCCCHHHHHHHcCCCch---------------hhHhhCCCCCCCCCcCCcHhHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 99987765543321111 11222222 222 6666777888888888888888776654
Q ss_pred h
Q 023866 273 R 273 (276)
Q Consensus 273 ~ 273 (276)
+
T Consensus 295 k 295 (414)
T COG1004 295 K 295 (414)
T ss_pred H
Confidence 3
No 105
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.93 E-value=5.4e-09 Score=89.38 Aligned_cols=80 Identities=21% Similarity=0.292 Sum_probs=65.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCe-EEEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCcccHHHH
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDR-ICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVDKAA 87 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~-V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~~~~v 87 (276)
+|||||||+|.||..+++.|.+.+. .-+ +.++ ||++++.+.+.+ .+...+.+.++++.++|+|++|++++.+.++
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~--~~elv~v~-d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~~~~ 77 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRI--NAELYAFY-DRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAVEEV 77 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCC--CeEEEEEE-CCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHHHHH
Confidence 4799999999999999999987631 115 4467 999999888766 5777777888888899999999999988888
Q ss_pred HHHHh
Q 023866 88 VITEE 92 (276)
Q Consensus 88 l~~~~ 92 (276)
..+..
T Consensus 78 ~~~al 82 (265)
T PRK13304 78 VPKSL 82 (265)
T ss_pred HHHHH
Confidence 77663
No 106
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.93 E-value=6.5e-09 Score=89.08 Aligned_cols=80 Identities=18% Similarity=0.245 Sum_probs=65.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC--CCCCCCeEE-EEeCCCHHHHHHHHH-cCc-eeccCchhhhcCCCEEEEeeCcc
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKS--GVLPPDRIC-TAVHSNLKRRDAFES-IGV-KVLSDNNAVVEYSDVVVFSVKPQ 82 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~--g~~~~~~V~-v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~~aDvI~lav~~~ 82 (276)
|+.+||||||+|.||..+++.|.+. ++ ++. +| +|++++.+.+.+ .|. ..+.+.++++.++|+|++|+|++
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~----el~aV~-dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~ 78 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGL----TLSAVA-VRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPAS 78 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCe----EEEEEE-CCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcH
Confidence 6679999999999999999999863 55 776 66 999999887765 564 45677888889999999999998
Q ss_pred cHHHHHHHHh
Q 023866 83 VDKAAVITEE 92 (276)
Q Consensus 83 ~~~~vl~~~~ 92 (276)
...++.....
T Consensus 79 ~h~e~~~~aL 88 (271)
T PRK13302 79 VLRAIVEPVL 88 (271)
T ss_pred HHHHHHHHHH
Confidence 8888776653
No 107
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.91 E-value=3.6e-09 Score=85.44 Aligned_cols=65 Identities=18% Similarity=0.327 Sum_probs=48.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH--------------------cCceeccCchhhhc
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------------------IGVKVLSDNNAVVE 70 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------------------~g~~~~~~~~~~~~ 70 (276)
|||+|||+|.+|..+|..|.++|| +|+.+ |.++++.+.+.+ ..+..+++..+++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~----~V~g~-D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~ 75 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGH----QVIGV-DIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIK 75 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTS----EEEEE--S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH
T ss_pred CEEEEECCCcchHHHHHHHHhCCC----EEEEE-eCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhh
Confidence 799999999999999999999999 99999 999999887763 12345566777789
Q ss_pred CCCEEEEeeC
Q 023866 71 YSDVVVFSVK 80 (276)
Q Consensus 71 ~aDvI~lav~ 80 (276)
++|++|+|||
T Consensus 76 ~adv~~I~Vp 85 (185)
T PF03721_consen 76 DADVVFICVP 85 (185)
T ss_dssp H-SEEEE---
T ss_pred ccceEEEecC
Confidence 9999999996
No 108
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.88 E-value=2.3e-08 Score=74.88 Aligned_cols=101 Identities=18% Similarity=0.288 Sum_probs=74.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEE-EEeCCCHHHHHHHHH-cCceeccCchhhhc--CCCEEEEeeCcccHHH
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVE--YSDVVVFSVKPQVDKA 86 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~aDvI~lav~~~~~~~ 86 (276)
+||||||+|.+|......+.+... ..++. ++ |+++++.+.+.+ .|+..++|..++++ +.|+|++++|+....+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~--~~~v~~v~-d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~ 77 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSP--DFEVVAVC-DPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAE 77 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTT--TEEEEEEE-CSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCC--CcEEEEEE-eCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHH
Confidence 589999999999999999887732 12555 56 999999988765 88888889888887 7999999999987777
Q ss_pred HHHHHhhccccccCCcccCC-CCcccHHHHHHHc
Q 023866 87 AVITEEAFGFCCCRSEIERP-SGLQRWSRWVEWT 119 (276)
Q Consensus 87 vl~~~~~~~~~~~~~~l~~~-~g~~~~~~l~~~l 119 (276)
++....+.| .+++..+ -+. +.++++++.
T Consensus 78 ~~~~~l~~g----~~v~~EKP~~~-~~~~~~~l~ 106 (120)
T PF01408_consen 78 IAKKALEAG----KHVLVEKPLAL-TLEEAEELV 106 (120)
T ss_dssp HHHHHHHTT----SEEEEESSSSS-SHHHHHHHH
T ss_pred HHHHHHHcC----CEEEEEcCCcC-CHHHHHHHH
Confidence 766653333 4555443 344 555555443
No 109
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=98.88 E-value=6.9e-07 Score=77.43 Aligned_cols=233 Identities=15% Similarity=0.139 Sum_probs=126.2
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec--------------cCchhhhcCCCEEEEeeCcccHHH
Q 023866 21 MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--------------SDNNAVVEYSDVVVFSVKPQVDKA 86 (276)
Q Consensus 21 mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~--------------~~~~~~~~~aDvI~lav~~~~~~~ 86 (276)
||+.++..|.++|+ +|+++ +|+ ++.+.+++.|+.+. +++++ ...+|+||+|||.+++.+
T Consensus 2 iG~~~a~~L~~~G~----~V~l~-~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~~~~ 74 (293)
T TIGR00745 2 VGSLYGAYLARAGH----DVTLL-ARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQTEE 74 (293)
T ss_pred chHHHHHHHHhCCC----cEEEE-ecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchhHHH
Confidence 79999999999999 99999 997 67777776554321 12223 568999999999999999
Q ss_pred HHHHHhhccccccCCcccCCCCcccHHHHHHHcCCCcEEEEecCccc---------cccCcceEeecCCCCCHHHHHHHH
Q 023866 87 AVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTGHSRFIRVMPNTPS---------AVGEAATVMSLGGTATEEDGELIG 157 (276)
Q Consensus 87 vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~~~~vv~~~p~~~~---------~~~~g~~~i~~~~~~~~~~~~~v~ 157 (276)
+++.+.. -+.++..++.-.+|+...+.+.+.++..+++......+. ..+.+...+...++ +.+..+.+.
T Consensus 75 ~l~~l~~-~l~~~~~iv~~qNG~g~~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~-~~~~~~~l~ 152 (293)
T TIGR00745 75 AAALLLP-LIGKNTKVLFLQNGLGHEERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVG-ENEAVEALA 152 (293)
T ss_pred HHHHhHh-hcCCCCEEEEccCCCCCHHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCC-chHHHHHHH
Confidence 9988821 011112223333888556778887774445443332221 11222222222211 225567788
Q ss_pred HHhhhcCceEEcCCC-------------CchhhhhhcCchHH----------HHHHHHHHHHHHHHHcCCCH--HHHHHH
Q 023866 158 KLFGSVGKIWRADEK-------------LFDAITGLSGSGPA----------YIFLAIEALADGGVAAGLPR--ELALGL 212 (276)
Q Consensus 158 ~ll~~~G~~~~~~e~-------------~~~~~~a~~g~~p~----------~~~~~~~~l~~~~~~~Gl~~--~~a~~~ 212 (276)
++|+..|..+...++ -++.++++.++... .+..++.-....+.+.|++. +...+.
T Consensus 153 ~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~~~ 232 (293)
T TIGR00745 153 ELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVDLPDDEVEEL 232 (293)
T ss_pred HHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 888888855444443 24556666654211 11222223333356778654 333333
Q ss_pred HHHHHHHHHHHHHhcCC-ChHHHHHhcCCCCchHHHH-----HHHHHhCChHHHHHHHHHHHHH
Q 023866 213 ASQTVLGAASMVTKSGK-HPGQLKDDVASPGGTTIAG-----IHELEKSGFRGILMNAVVAAAK 270 (276)
Q Consensus 213 ~~~~~~g~~~~~~~~~~-~~~~l~~~v~sp~g~t~~~-----l~~l~~~~~~~~~~~a~~~~~~ 270 (276)
+.... ..... .+.++.|.. ..+-+-... ++.-++.|++....+.+...++
T Consensus 233 ~~~~~-------~~~~~~~sSm~~D~~-~gr~tEid~i~G~~v~~a~~~gv~~P~~~~l~~~~~ 288 (293)
T TIGR00745 233 VRAVI-------RMTAENTSSMLQDLL-RGRRTEIDAINGAVVRLAEKLGIDAPVNRTLYALLK 288 (293)
T ss_pred HHHHH-------hcCCCCCChHHHHHH-cCCcchHHHhccHHHHHHHHcCCCCChHHHHHHHHH
Confidence 32221 11111 245554433 322222233 3334556777777776665543
No 110
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.79 E-value=3.1e-06 Score=69.96 Aligned_cols=208 Identities=20% Similarity=0.158 Sum_probs=126.4
Q ss_pred CCeEEEEcccHH--------------------HHHHHHHHHhCCCCCCCeEEEEeCCCHH-----HHHHHHHcCceeccC
Q 023866 10 SFILGFIGAGKM--------------------AESIAKGVAKSGVLPPDRICTAVHSNLK-----RRDAFESIGVKVLSD 64 (276)
Q Consensus 10 ~~kIgiIG~G~m--------------------G~~la~~l~~~g~~~~~~V~v~~~r~~~-----~~~~l~~~g~~~~~~ 64 (276)
+|||++.|+||- |..||-.+.++|| +|.+. +.|.+ .-+++.+.|+.+++|
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGH----DVVLa-ePn~d~~dd~~w~~vedAGV~vv~d 75 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGH----DVVLA-EPNRDIMDDEHWKRVEDAGVEVVSD 75 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCC----cEEee-cCCccccCHHHHHHHHhcCcEEecC
Confidence 479999999973 7789999999999 99999 77653 345666689999999
Q ss_pred chhhhcCCCEEEEeeCcc-cHHHHHHHHhhccccccCCcccCCCCcccH----HHHHHHcC-CCcEEEEecCccccc---
Q 023866 65 NNAVVEYSDVVVFSVKPQ-VDKAAVITEEAFGFCCCRSEIERPSGLQRW----SRWVEWTG-HSRFIRVMPNTPSAV--- 135 (276)
Q Consensus 65 ~~~~~~~aDvI~lav~~~-~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~----~~l~~~l~-~~~vv~~~p~~~~~~--- 135 (276)
..++++.+++.+|.+|-. ..-.+..+|.. -.+...++...-.+ +. ..|+..+. ...-++.++.+|+.+
T Consensus 76 D~eaa~~~Ei~VLFTPFGk~T~~Iarei~~--hvpEgAVicnTCT~-sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGt 152 (340)
T COG4007 76 DAEAAEHGEIHVLFTPFGKATFGIAREILE--HVPEGAVICNTCTV-SPVVLYYSLEGELRTKREDVGVSSMHPAGVPGT 152 (340)
T ss_pred chhhhhcceEEEEecccchhhHHHHHHHHh--hCcCCcEecccccC-chhHHHHHhhhhhcCchhhcCccccCCCCCCCC
Confidence 999999999999999865 55566666510 00002223222223 22 22333332 112233344444333
Q ss_pred -cCcceEeecC-----CCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHH----HHcCC
Q 023866 136 -GEAATVMSLG-----GTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGG----VAAGL 204 (276)
Q Consensus 136 -~~g~~~i~~~-----~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~----~~~Gl 204 (276)
.++...+..- .-.++++.+++.++.++.|+. +++..+. ..++.-.+.......++++.+.. +-.|-
T Consensus 153 p~h~~yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~padv---~s~VaDmg~lvtav~l~gvldyy~Vg~qIi~A 229 (340)
T COG4007 153 PQHGHYVIAGRSTEGKELATEEQIERCVELAESTGKEVYVLPADV---VSAVADMGVLVTAVALSGVLDYYYVGTQIIGA 229 (340)
T ss_pred CCCceEEEeccCCCceeeccHHHHHHHHHHHHhcCCceEecCHHH---HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2344433311 114688999999999999987 5555433 22322222233344455555543 23677
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcC
Q 023866 205 PRELALGLASQTVLGAASMVTKSG 228 (276)
Q Consensus 205 ~~~~a~~~~~~~~~g~~~~~~~~~ 228 (276)
|++...+-+..++.-.+.+...+|
T Consensus 230 P~eMIekQilmtLqTmAsLvetsG 253 (340)
T COG4007 230 PKEMIEKQILMTLQTMASLVETSG 253 (340)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcc
Confidence 777776666667766677766554
No 111
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.78 E-value=3.2e-08 Score=77.58 Aligned_cols=72 Identities=18% Similarity=0.297 Sum_probs=58.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCC-CCCCCeEEEEeCCCHHHHHHHHH-cCc----eeccCchhhhcCCCEEEEeeCc
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFES-IGV----KVLSDNNAVVEYSDVVVFSVKP 81 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g-~~~~~~V~v~~~r~~~~~~~l~~-~g~----~~~~~~~~~~~~aDvI~lav~~ 81 (276)
.+.++|+|||+|.||.+++..|.+.| + +|+++ +|++++.+.+.+ .+. ....+..++++++|+||+|+|+
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~----~v~v~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~ 91 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAA----KIVIV-NRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPV 91 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCC----EEEEE-cCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCC
Confidence 35689999999999999999999885 5 89999 999998887665 342 1334566668899999999998
Q ss_pred ccH
Q 023866 82 QVD 84 (276)
Q Consensus 82 ~~~ 84 (276)
...
T Consensus 92 ~~~ 94 (155)
T cd01065 92 GMK 94 (155)
T ss_pred CCC
Confidence 753
No 112
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.68 E-value=2.2e-07 Score=81.90 Aligned_cols=72 Identities=15% Similarity=0.244 Sum_probs=56.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCccc-HHH
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-DKA 86 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~-~~~ 86 (276)
...++|||||+|+||+++|+.|...|+ +|++| ||+++..... .....+..+++++||+|++++|... ...
T Consensus 144 l~g~~VgIIG~G~IG~~vA~~L~~~G~----~V~~~-d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~t~~ 214 (330)
T PRK12480 144 VKNMTVAIIGTGRIGAATAKIYAGFGA----TITAY-DAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKESYH 214 (330)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-eCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHHHHH
Confidence 456899999999999999999999998 99999 9987654321 2234567889999999999998653 444
Q ss_pred HH
Q 023866 87 AV 88 (276)
Q Consensus 87 vl 88 (276)
++
T Consensus 215 li 216 (330)
T PRK12480 215 LF 216 (330)
T ss_pred HH
Confidence 43
No 113
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.65 E-value=5.4e-07 Score=73.79 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=61.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhh-cCCCEEEEeeCcc-c
Q 023866 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVV-EYSDVVVFSVKPQ-V 83 (276)
Q Consensus 7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~-~~aDvI~lav~~~-~ 83 (276)
.+..++|+|+|+|+||..+++.|.+.|+ +|+++ |+++++++.+.+ .|....+. .++. .+||+++.|.... .
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~----~Vvv~-D~~~~~~~~~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~~I 98 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA----KLIVA-DINEEAVARAAELFGATVVAP-EEIYSVDADVFAPCALGGVI 98 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHHcCCEEEcc-hhhccccCCEEEeccccccc
Confidence 4566899999999999999999999999 99999 999998888876 47665433 4444 3799999775443 3
Q ss_pred HHHHHHHH
Q 023866 84 DKAAVITE 91 (276)
Q Consensus 84 ~~~vl~~~ 91 (276)
..+.+.++
T Consensus 99 ~~~~~~~l 106 (200)
T cd01075 99 NDDTIPQL 106 (200)
T ss_pred CHHHHHHc
Confidence 45566666
No 114
>PLN03139 formate dehydrogenase; Provisional
Probab=98.64 E-value=2e-07 Score=83.40 Aligned_cols=108 Identities=13% Similarity=0.104 Sum_probs=72.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc-ccHHH
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVDKA 86 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~-~~~~~ 86 (276)
...++|||||+|+||..+++.|...|. +|.+| ||+....+...+.|+....+..+++.+||+|++++|. ...+.
T Consensus 197 L~gktVGIVG~G~IG~~vA~~L~afG~----~V~~~-d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~ 271 (386)
T PLN03139 197 LEGKTVGTVGAGRIGRLLLQRLKPFNC----NLLYH-DRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRG 271 (386)
T ss_pred CCCCEEEEEeecHHHHHHHHHHHHCCC----EEEEE-CCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHH
Confidence 457899999999999999999999898 99998 9886444444456776666888999999999999984 34555
Q ss_pred HHHHHhhccccccCCcccCC-CCcccHHHHHHHcC
Q 023866 87 AVITEEAFGFCCCRSEIERP-SGLQRWSRWVEWTG 120 (276)
Q Consensus 87 vl~~~~~~~~~~~~~~l~~~-~g~~~~~~l~~~l~ 120 (276)
++..-.-...+++.-+++.. .++...+.|.+.+.
T Consensus 272 li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~ 306 (386)
T PLN03139 272 MFNKERIAKMKKGVLIVNNARGAIMDTQAVADACS 306 (386)
T ss_pred HhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHH
Confidence 55321000111112222222 34435566766665
No 115
>PRK07574 formate dehydrogenase; Provisional
Probab=98.57 E-value=1.6e-07 Score=84.02 Aligned_cols=77 Identities=14% Similarity=0.252 Sum_probs=61.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHH
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKA 86 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~ 86 (276)
...++|||||+|+||+.+++.|...|. +|.+| ||++...+.....|+....+.+++++.||+|++++|-. ..+.
T Consensus 190 L~gktVGIvG~G~IG~~vA~~l~~fG~----~V~~~-dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~ 264 (385)
T PRK07574 190 LEGMTVGIVGAGRIGLAVLRRLKPFDV----KLHYT-DRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEH 264 (385)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-CCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHH
Confidence 456899999999999999999999998 99999 99864433334467765668899999999999999843 4555
Q ss_pred HHH
Q 023866 87 AVI 89 (276)
Q Consensus 87 vl~ 89 (276)
++.
T Consensus 265 li~ 267 (385)
T PRK07574 265 LFD 267 (385)
T ss_pred HhC
Confidence 553
No 116
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.56 E-value=2.4e-07 Score=74.52 Aligned_cols=68 Identities=18% Similarity=0.361 Sum_probs=55.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP 81 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~ 81 (276)
...++|||||+|++|+.+++.+..-|. +|++| +|+..........+... .+.+++++.||+|++++|-
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~fG~----~V~~~-d~~~~~~~~~~~~~~~~-~~l~ell~~aDiv~~~~pl 101 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAFGM----RVIGY-DRSPKPEEGADEFGVEY-VSLDELLAQADIVSLHLPL 101 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHTT-----EEEEE-ESSCHHHHHHHHTTEEE-SSHHHHHHH-SEEEE-SSS
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecCCc----eeEEe-cccCChhhhccccccee-eehhhhcchhhhhhhhhcc
Confidence 357899999999999999999999998 99999 99987665455667744 4788999999999999983
No 117
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.54 E-value=4.4e-07 Score=79.87 Aligned_cols=71 Identities=23% Similarity=0.369 Sum_probs=58.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH----cC--ceeccCchhhhcCCCEEEEeeCcc
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IG--VKVLSDNNAVVEYSDVVVFSVKPQ 82 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~g--~~~~~~~~~~~~~aDvI~lav~~~ 82 (276)
+..++||||+|.||...+..+... .+..+|++| +|++++++.+.+ .| +..+.++.+++++||+|++|++..
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~--~~~~~v~V~-~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~ 203 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRV--FDLEEVSVY-CRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR 203 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc--CCCCEEEEE-CCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC
Confidence 457899999999999988887653 245689999 999999877654 45 456788999999999999999754
No 118
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.54 E-value=3.6e-07 Score=80.07 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=56.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHh-CCCCCCCeEEEEeCCCHHHHHHHHHc----C--ceeccCchhhhcCCCEEEEeeCc
Q 023866 9 ESFILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRRDAFESI----G--VKVLSDNNAVVEYSDVVVFSVKP 81 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~-~g~~~~~~V~v~~~r~~~~~~~l~~~----g--~~~~~~~~~~~~~aDvI~lav~~ 81 (276)
+..+|+|||+|.||..++..+.. .+ ..+|++| +|++++.+.+.+. | +..+.+..+++.+||+|+.|++.
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~---~~~V~V~-~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s 199 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRP---IKQVRVW-GRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLS 199 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCC---CCEEEEE-cCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCC
Confidence 45799999999999999987665 23 2489999 9999998887762 4 55667788889999999888875
Q ss_pred c
Q 023866 82 Q 82 (276)
Q Consensus 82 ~ 82 (276)
.
T Consensus 200 ~ 200 (314)
T PRK06141 200 T 200 (314)
T ss_pred C
Confidence 4
No 119
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.52 E-value=2.4e-07 Score=71.01 Aligned_cols=71 Identities=21% Similarity=0.318 Sum_probs=56.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-c---Cce--eccCchhhhcCCCEEEEeeCc
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I---GVK--VLSDNNAVVEYSDVVVFSVKP 81 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~---g~~--~~~~~~~~~~~aDvI~lav~~ 81 (276)
.+..++.|||+|.||++++..|.+.|. .+|+++ +|+.++++.+.+ . .+. ..++..+...++|+||.|++.
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~---~~i~i~-nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~ 85 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGA---KEITIV-NRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPS 85 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTS---SEEEEE-ESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SST
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCC---CEEEEE-ECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCC
Confidence 357899999999999999999999987 369999 999999998876 3 222 234555667899999999975
Q ss_pred c
Q 023866 82 Q 82 (276)
Q Consensus 82 ~ 82 (276)
.
T Consensus 86 ~ 86 (135)
T PF01488_consen 86 G 86 (135)
T ss_dssp T
T ss_pred C
Confidence 4
No 120
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=98.51 E-value=6.5e-07 Score=72.63 Aligned_cols=81 Identities=17% Similarity=0.324 Sum_probs=64.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCcccHHHHHH
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAVI 89 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl~ 89 (276)
++||+||||.+|..+...+ +.|-.+-+-+.+| ||+.+++..+.+ .+....++.++.+...|+++-|-.++++++...
T Consensus 1 l~vgiVGcGaIG~~l~e~v-~~~~~~~e~v~v~-D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~Av~e~~~ 78 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELV-RDGRVDFELVAVY-DRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPEAVREYVP 78 (255)
T ss_pred CeEEEEeccHHHHHHHHHH-hcCCcceeEEEEe-cCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCHHHHHHHhH
Confidence 6899999999999998854 5452222345666 999999998877 555445778888899999999999999999888
Q ss_pred HHhh
Q 023866 90 TEEA 93 (276)
Q Consensus 90 ~~~~ 93 (276)
++.+
T Consensus 79 ~~L~ 82 (255)
T COG1712 79 KILK 82 (255)
T ss_pred HHHh
Confidence 8754
No 121
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.49 E-value=4.1e-07 Score=78.60 Aligned_cols=72 Identities=15% Similarity=0.222 Sum_probs=59.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec--cCchhhhcCCCEEEEeeCccc
Q 023866 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--SDNNAVVEYSDVVVFSVKPQV 83 (276)
Q Consensus 7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~--~~~~~~~~~aDvI~lav~~~~ 83 (276)
....++++|||+|.||.++++.|...|. +|+++ +|++++.+.+.+.|.... .+..+.+.++|+||.++|...
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~----~V~v~-~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~i 221 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA----RVFVG-ARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALV 221 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHH
Confidence 3456899999999999999999999998 99999 999988777766665432 344677889999999998653
No 122
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.49 E-value=4.4e-07 Score=80.16 Aligned_cols=74 Identities=20% Similarity=0.271 Sum_probs=57.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHH
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKA 86 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~ 86 (276)
...++|||||+|+||+.+|+.|...|. +|.+| +|+++.. .....+... .+..+++++||+|++++|.. ..+.
T Consensus 148 L~gktvgIiG~G~IG~~vA~~l~~~G~----~V~~~-d~~~~~~-~~~~~~~~~-~~l~ell~~aDiV~l~lP~t~~T~~ 220 (333)
T PRK13243 148 VYGKTIGIIGFGRIGQAVARRAKGFGM----RILYY-SRTRKPE-AEKELGAEY-RPLEELLRESDFVSLHVPLTKETYH 220 (333)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-CCCCChh-hHHHcCCEe-cCHHHHHhhCCEEEEeCCCChHHhh
Confidence 356899999999999999999999998 99999 9986543 223345543 46888999999999999853 3444
Q ss_pred HH
Q 023866 87 AV 88 (276)
Q Consensus 87 vl 88 (276)
++
T Consensus 221 ~i 222 (333)
T PRK13243 221 MI 222 (333)
T ss_pred cc
Confidence 44
No 123
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=98.48 E-value=5.4e-07 Score=76.74 Aligned_cols=100 Identities=18% Similarity=0.253 Sum_probs=71.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhC-CCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHH
Q 023866 10 SFILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAA 87 (276)
Q Consensus 10 ~~kIgiIG~-G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~v 87 (276)
++||+|||+ |.||..++..+.+. ++ ++...+++++++.+.....++..+.+..++++++|+|+.+++|....++
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~----elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~~~~~~ 76 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDL----ELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPEATLEN 76 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCC----EEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCHHHHHHH
Confidence 479999999 99999999888753 44 6664338888765544335666667777877789999999999887777
Q ss_pred HHHHhhccccccCCcccCCCCcccHHHHHHH
Q 023866 88 VITEEAFGFCCCRSEIERPSGLQRWSRWVEW 118 (276)
Q Consensus 88 l~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~ 118 (276)
+....+.| .+++....|. +.+++.++
T Consensus 77 ~~~al~~G----~~vvigttG~-s~~~~~~l 102 (257)
T PRK00048 77 LEFALEHG----KPLVIGTTGF-TEEQLAEL 102 (257)
T ss_pred HHHHHHcC----CCEEEECCCC-CHHHHHHH
Confidence 76653333 5566545677 66555443
No 124
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.46 E-value=2.8e-07 Score=69.57 Aligned_cols=97 Identities=22% Similarity=0.320 Sum_probs=65.9
Q ss_pred CeEEEEcc-cHHHHHHHHHHHh-CCCCCCCeEEEEeCCCHHH-H----HHHH---HcCceeccCchhhhcCCCEEEEeeC
Q 023866 11 FILGFIGA-GKMAESIAKGVAK-SGVLPPDRICTAVHSNLKR-R----DAFE---SIGVKVLSDNNAVVEYSDVVVFSVK 80 (276)
Q Consensus 11 ~kIgiIG~-G~mG~~la~~l~~-~g~~~~~~V~v~~~r~~~~-~----~~l~---~~g~~~~~~~~~~~~~aDvI~lav~ 80 (276)
|||+++|+ |+||+.+++.+.+ .++ ++...++|+++. . -.+. ..|+.+.++.+++.+.+|+||-.+.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~----~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT~ 76 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGF----ELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFTN 76 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTE----EEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES-
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCc----EEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcCC
Confidence 68999999 9999999999988 566 766444887621 1 1111 2467778888999989999999998
Q ss_pred cccHHHHHHHHhhccccccCCcccCCCCcccHHHHH
Q 023866 81 PQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWV 116 (276)
Q Consensus 81 ~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~ 116 (276)
|+.+.+.++...+.+ .+++....|. +.++++
T Consensus 77 p~~~~~~~~~~~~~g----~~~ViGTTG~-~~~~~~ 107 (124)
T PF01113_consen 77 PDAVYDNLEYALKHG----VPLVIGTTGF-SDEQID 107 (124)
T ss_dssp HHHHHHHHHHHHHHT-----EEEEE-SSS-HHHHHH
T ss_pred hHHhHHHHHHHHhCC----CCEEEECCCC-CHHHHH
Confidence 888777776653322 5677766888 654443
No 125
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.43 E-value=2.1e-05 Score=69.24 Aligned_cols=184 Identities=18% Similarity=0.198 Sum_probs=106.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-------------------cC-ceeccCchhhhc
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------IG-VKVLSDNNAVVE 70 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~~ 70 (276)
++||+||+|-+|.++|..+.++|+ +|..+ |.++.+.+.+.. .| ++.+++..+ ++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~----~ViG~-DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~ 83 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGF----KVIGV-DINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEE-LK 83 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCC----ceEeE-eCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhh-cc
Confidence 899999999999999999999999 99999 999998877653 12 445556655 46
Q ss_pred CCCEEEEeeCcc----------cHHHHHHHHhhccccccCCcccCC----------CCcccHHHHHH-HcC---C----C
Q 023866 71 YSDVVVFSVKPQ----------VDKAAVITEEAFGFCCCRSEIERP----------SGLQRWSRWVE-WTG---H----S 122 (276)
Q Consensus 71 ~aDvI~lav~~~----------~~~~vl~~~~~~~~~~~~~~l~~~----------~g~~~~~~l~~-~l~---~----~ 122 (276)
.||++++|||.. .+++..+.+ .++|..+ .|. + +++.. .+. + .
T Consensus 84 ~~dv~iI~VPTPl~~~~~pDls~v~~aa~sI--------a~~L~kG~LVIlEST~~PGT-T-e~v~~plle~~sgL~~~~ 153 (436)
T COG0677 84 ECDVFIICVPTPLKKYREPDLSYVESAARSI--------APVLKKGDLVILESTTPPGT-T-EEVVKPLLEERSGLKFGE 153 (436)
T ss_pred cCCEEEEEecCCcCCCCCCChHHHHHHHHHH--------HHhcCCCCEEEEecCCCCCc-H-HHHHHHHHhhcCCCcccc
Confidence 999999999631 244555555 3444332 333 2 33222 111 1 1
Q ss_pred cE------EEEecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHH---HHHH
Q 023866 123 RF------IRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYI---FLAI 192 (276)
Q Consensus 123 ~v------v~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~---~~~~ 192 (276)
.+ -|.+|.....--....-+.+| .+++..+.+..+.+.+=.. +.++...-.....+.- +.|= -.++
T Consensus 154 Df~laysPERv~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~E--N~fRdVNIALa 229 (436)
T COG0677 154 DFYLAYSPERVLPGNVLKELVNNPKVIGG--VTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTE--NTFRDVNIALA 229 (436)
T ss_pred eeeEeeCccccCCCchhhhhhcCCceeec--CCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHh--hhhhHHHHHHH
Confidence 11 123333221110111123333 4677888888888887643 4444322111222111 1110 0234
Q ss_pred HHHHHHHHHcCCCHHHHHHHHH
Q 023866 193 EALADGGVAAGLPRELALGLAS 214 (276)
Q Consensus 193 ~~l~~~~~~~Gl~~~~a~~~~~ 214 (276)
+-|+-.+.++|++.-++.++++
T Consensus 230 NElali~~~~GIdvwevIeaAn 251 (436)
T COG0677 230 NELALICNAMGIDVWEVIEAAN 251 (436)
T ss_pred HHHHHHHHHhCCcHHHHHHHhc
Confidence 4555567789999777766654
No 126
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.42 E-value=1.2e-06 Score=76.66 Aligned_cols=78 Identities=24% Similarity=0.301 Sum_probs=59.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceec--cCchhhhcCCCEEEEeeCcccHH
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVL--SDNNAVVEYSDVVVFSVKPQVDK 85 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~--~~~~~~~~~aDvI~lav~~~~~~ 85 (276)
..++|+|||+|.||..+++.|...|. .+|+++ +|++++.+.+.+ .|.... .+..+.+.++|+||.|++.....
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~---~~V~v~-~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~~ 252 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGV---AEITIA-NRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHYA 252 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCC---CEEEEE-eCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCchH
Confidence 46899999999999999999987653 389999 999998877766 565432 34456678999999999876654
Q ss_pred HHHHH
Q 023866 86 AAVIT 90 (276)
Q Consensus 86 ~vl~~ 90 (276)
.++..
T Consensus 253 ~~~~~ 257 (311)
T cd05213 253 KIVER 257 (311)
T ss_pred HHHHH
Confidence 44433
No 127
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.40 E-value=1.7e-06 Score=75.70 Aligned_cols=107 Identities=11% Similarity=0.060 Sum_probs=67.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHH
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKA 86 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~ 86 (276)
...++|||||+|+||..+++.|...|+ +|++| +|++++...+... ....+..+++++||+|++++|.. ..+.
T Consensus 134 l~g~tvgIvG~G~IG~~vA~~l~afG~----~V~~~-~~~~~~~~~~~~~--~~~~~l~e~l~~aDvvv~~lPlt~~T~~ 206 (312)
T PRK15469 134 REDFTIGILGAGVLGSKVAQSLQTWGF----PLRCW-SRSRKSWPGVQSF--AGREELSAFLSQTRVLINLLPNTPETVG 206 (312)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCCCCCCCceee--cccccHHHHHhcCCEEEECCCCCHHHHH
Confidence 456899999999999999999999998 99999 9876542211111 11246678899999999999853 4555
Q ss_pred HHHHHhhccccccCCcccCC-CCcccHHHHHHHcCC
Q 023866 87 AVITEEAFGFCCCRSEIERP-SGLQRWSRWVEWTGH 121 (276)
Q Consensus 87 vl~~~~~~~~~~~~~~l~~~-~g~~~~~~l~~~l~~ 121 (276)
++..-.-...+++.-+++-. .+++..+.|.+.+..
T Consensus 207 li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~ 242 (312)
T PRK15469 207 IINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDS 242 (312)
T ss_pred HhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhc
Confidence 55321000111112222222 334356677766653
No 128
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.39 E-value=8.2e-07 Score=78.42 Aligned_cols=68 Identities=18% Similarity=0.228 Sum_probs=52.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHH-hCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCccc
Q 023866 8 AESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV 83 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~-~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~ 83 (276)
...++|||||+|+||+++++.|. ..|. +|++| |+++.... ..++....+..+++++||+|++++|...
T Consensus 144 l~g~~VgIIG~G~IG~~vA~~L~~~~g~----~V~~~-d~~~~~~~---~~~~~~~~~l~ell~~aDvIvl~lP~t~ 212 (332)
T PRK08605 144 IKDLKVAVIGTGRIGLAVAKIFAKGYGS----DVVAY-DPFPNAKA---ATYVDYKDTIEEAVEGADIVTLHMPATK 212 (332)
T ss_pred eCCCEEEEECCCHHHHHHHHHHHhcCCC----EEEEE-CCCccHhH---HhhccccCCHHHHHHhCCEEEEeCCCCc
Confidence 45689999999999999999984 4566 88888 98865431 1234444578889999999999998654
No 129
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.35 E-value=1.8e-06 Score=75.04 Aligned_cols=71 Identities=13% Similarity=0.204 Sum_probs=59.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec--cCchhhhcCCCEEEEeeCccc
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--SDNNAVVEYSDVVVFSVKPQV 83 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~--~~~~~~~~~aDvI~lav~~~~ 83 (276)
....|++|||+|.+|..++..|.+.|. +|+++ +|++++.+.+...|.... .+..+.+.++|+||.++|+..
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~Ga----~V~v~-~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~ 222 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKALGA----NVTVG-ARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALV 222 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhh
Confidence 356899999999999999999999997 99999 999988877777787643 345577889999999998753
No 130
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.35 E-value=0.00016 Score=62.64 Aligned_cols=147 Identities=17% Similarity=0.180 Sum_probs=94.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH---cCce--eccCchhhh---cCCCEEEEeeCc
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---IGVK--VLSDNNAVV---EYSDVVVFSVKP 81 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~---~g~~--~~~~~~~~~---~~aDvI~lav~~ 81 (276)
.+.||.||++.||..++.+...+|| .|.+| ||+.++.+++.+ .|.. -..++++.+ +..-+|++.|+.
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~Gf----~v~~y-NRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkA 80 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADKGF----TVCAY-NRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKA 80 (487)
T ss_pred ccchhhhhHhhhhhhhhhcccccCc----eEEEe-ccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeC
Confidence 4689999999999999999999999 99999 999999988765 3433 345677664 568899999986
Q ss_pred c-cHHHHHHHHhhccccccCCcccCC-----CCc--c--cHHHHHHHcC-CCcEEEEecCccc-cccCcceEeecCCCCC
Q 023866 82 Q-VDKAAVITEEAFGFCCCRSEIERP-----SGL--Q--RWSRWVEWTG-HSRFIRVMPNTPS-AVGEAATVMSLGGTAT 149 (276)
Q Consensus 82 ~-~~~~vl~~~~~~~~~~~~~~l~~~-----~g~--~--~~~~l~~~l~-~~~vv~~~p~~~~-~~~~g~~~i~~~~~~~ 149 (276)
- .+...++++ .|++..+ .|- . +....+++.. +.-++.+--.... -.+.|...+.. ++
T Consensus 81 G~pVD~~I~~L--------~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSlMpG---g~ 149 (487)
T KOG2653|consen 81 GAPVDQFIEEL--------VPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSLMPG---GS 149 (487)
T ss_pred CCcHHHHHHHH--------HhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCccCCC---CC
Confidence 5 466777777 5666543 222 0 1223333222 2233432111111 11234454433 48
Q ss_pred HHHHHHHHHHhhhcC-------ce-EEcCCC
Q 023866 150 EEDGELIGKLFGSVG-------KI-WRADEK 172 (276)
Q Consensus 150 ~~~~~~v~~ll~~~G-------~~-~~~~e~ 172 (276)
+++.+.++++|..+. .+ .+++|.
T Consensus 150 ~~Awp~ik~ifq~iaakv~~~epCc~wvG~~ 180 (487)
T KOG2653|consen 150 KEAWPHIKDIFQKIAAKVSDGEPCCDWVGEG 180 (487)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCeeeecCC
Confidence 899999999997652 23 567773
No 131
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=1.8e-05 Score=64.57 Aligned_cols=238 Identities=13% Similarity=0.042 Sum_probs=130.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEE-EEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCcccHHHH
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVDKAA 87 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~~~~~~v 87 (276)
.+.+||||.|..|.+....-.+.++ .+. +. .|++++++.|.+ .+... .+.+...+-.+++|.-+|+..+..+
T Consensus 10 ~v~~~~vgtgrl~ra~~~ra~h~~~----~cs~i~-srS~~~a~~LaE~~~a~p-~d~~~~ael~~~vfv~vpd~~~s~v 83 (289)
T COG5495 10 RVVVGIVGTGRLGRAALLRADHVVV----ACSAIS-SRSRDRAQNLAETYVAPP-LDVAKSAELLLLVFVDVPDALYSGV 83 (289)
T ss_pred eeEEEEeecchHHHHHHHHhcchhe----eehhhh-hcCHHHHhhchhccCCCc-cchhhChhhhceEEecchHHHHHHH
Confidence 3789999999999985544444444 443 44 899999888777 33322 1222334456788888887755555
Q ss_pred HHHHhhccccccCCcccCCCCcccHHHHHHHcC-CCcEEEEecCcccccc----C-cceEeecCCCCCHHHHHHHHHHhh
Q 023866 88 VITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-HSRFIRVMPNTPSAVG----E-AATVMSLGGTATEEDGELIGKLFG 161 (276)
Q Consensus 88 l~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-~~~vv~~~p~~~~~~~----~-g~~~i~~~~~~~~~~~~~v~~ll~ 161 (276)
...- .+.+..++-+.+|-...+.+.+.-. ++--..+||+..-+.- + -.-.+++..+.++--...++.+..
T Consensus 84 aa~~----~~rpg~iv~HcSga~~~~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai~q~la~ 159 (289)
T COG5495 84 AATS----LNRPGTIVAHCSGANGSGILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAIVQSLAL 159 (289)
T ss_pred HHhc----ccCCCeEEEEccCCCchhhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccHHHHHHHH
Confidence 4332 1222344544455533344444322 3334567776432210 0 001122222345566788899999
Q ss_pred hcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCC
Q 023866 162 SVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVAS 240 (276)
Q Consensus 162 ~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~s 240 (276)
.+|.. +.+.|++--.+.+...+...|+-..+.--.+..+..|+|+-+..--+.+.+.|+.....+.+. ...|...|..
T Consensus 160 emgg~~f~V~~~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq~e~iv~~~pL~~g~~~n~~qrg~-a~aLTgpVaR 238 (289)
T COG5495 160 EMGGEPFCVREEARILYHAAAVHASNFIVTVLADALEIYRAAGDDQPELIVEVGPLARGALENTLQRGQ-ACALTGPVAR 238 (289)
T ss_pred HhCCCceeechhHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCcceeeeehHHHHHHHHHHHHhhh-hhcccCCccc
Confidence 99965 667666544433322111122212121122334578888765544466788888887765542 2245555543
Q ss_pred C-CchHHHHHHHHHhCChH
Q 023866 241 P-GGTTIAGIHELEKSGFR 258 (276)
Q Consensus 241 p-~g~t~~~l~~l~~~~~~ 258 (276)
. .+..++.+..|++-+-.
T Consensus 239 GD~~vve~hl~al~~ig~~ 257 (289)
T COG5495 239 GDWQVVEEHLRALEKIGAN 257 (289)
T ss_pred CcHHHHHHHHHHHHHhhHH
Confidence 2 34567888888876433
No 132
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.29 E-value=2.1e-06 Score=80.44 Aligned_cols=105 Identities=14% Similarity=0.185 Sum_probs=70.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHH
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKA 86 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~ 86 (276)
...++|||||+|+||+.+|+.|...|. +|++| ||... .+...+.|+....+..+++++||+|++++|.. ..+.
T Consensus 136 l~gktvgIiG~G~IG~~vA~~l~~fG~----~V~~~-d~~~~-~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~ 209 (525)
T TIGR01327 136 LYGKTLGVIGLGRIGSIVAKRAKAFGM----KVLAY-DPYIS-PERAEQLGVELVDDLDELLARADFITVHTPLTPETRG 209 (525)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-CCCCC-hhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhcc
Confidence 456899999999999999999998898 99999 98532 22334467765567889999999999999854 4444
Q ss_pred HHH--HHhhccccccCCcccCC-CCcccHHHHHHHcC
Q 023866 87 AVI--TEEAFGFCCCRSEIERP-SGLQRWSRWVEWTG 120 (276)
Q Consensus 87 vl~--~~~~~~~~~~~~~l~~~-~g~~~~~~l~~~l~ 120 (276)
++. .+. ..+++.-+++.. .++...+.|.+.+.
T Consensus 210 li~~~~l~--~mk~ga~lIN~aRG~~vde~aL~~aL~ 244 (525)
T TIGR01327 210 LIGAEELA--KMKKGVIIVNCARGGIIDEAALYEALE 244 (525)
T ss_pred CcCHHHHh--cCCCCeEEEEcCCCceeCHHHHHHHHH
Confidence 441 110 111111222222 44436667776665
No 133
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.28 E-value=1.5e-06 Score=75.62 Aligned_cols=70 Identities=17% Similarity=0.269 Sum_probs=53.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce-eccCchhhhcCCCEEEEeeCcc-cHH
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK-VLSDNNAVVEYSDVVVFSVKPQ-VDK 85 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~aDvI~lav~~~-~~~ 85 (276)
...++|||||+|+||+.+++.+...|. +|.+| +|+... .+.. ...+.++++++||+|++++|.. ..+
T Consensus 120 L~gktvgIiG~G~IG~~vA~~l~afG~----~V~~~-~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~ 188 (303)
T PRK06436 120 LYNKSLGILGYGGIGRRVALLAKAFGM----NIYAY-TRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDETR 188 (303)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-CCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchhh
Confidence 356899999999999999998877798 99999 987432 2332 2457889999999999999853 344
Q ss_pred HHH
Q 023866 86 AAV 88 (276)
Q Consensus 86 ~vl 88 (276)
.++
T Consensus 189 ~li 191 (303)
T PRK06436 189 GMI 191 (303)
T ss_pred cCc
Confidence 443
No 134
>PLN00203 glutamyl-tRNA reductase
Probab=98.27 E-value=3e-06 Score=78.72 Aligned_cols=80 Identities=26% Similarity=0.288 Sum_probs=61.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-c-Cce----eccCchhhhcCCCEEEEeeC-
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I-GVK----VLSDNNAVVEYSDVVVFSVK- 80 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~-g~~----~~~~~~~~~~~aDvI~lav~- 80 (276)
....+|+|||+|.||..++.+|...|. .+|+++ +|++++++.+.+ . +.. ...+..+.+.++|+||.|++
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~---~~V~V~-nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s 339 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGC---TKMVVV-NRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSS 339 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCC---CeEEEE-eCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCC
Confidence 456899999999999999999998885 379999 999999988876 3 332 22455677889999999984
Q ss_pred --cccHHHHHHHH
Q 023866 81 --PQVDKAAVITE 91 (276)
Q Consensus 81 --~~~~~~vl~~~ 91 (276)
|-...+.++.+
T Consensus 340 ~~pvI~~e~l~~~ 352 (519)
T PLN00203 340 ETPLFLKEHVEAL 352 (519)
T ss_pred CCCeeCHHHHHHh
Confidence 33345555554
No 135
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=98.26 E-value=8e-06 Score=72.32 Aligned_cols=81 Identities=19% Similarity=0.309 Sum_probs=59.5
Q ss_pred CCCCeEEEEcccHHH-HHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCce-eccCchhhhcC--CCEEEEeeCcc
Q 023866 8 AESFILGFIGAGKMA-ESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVK-VLSDNNAVVEY--SDVVVFSVKPQ 82 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG-~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~-~~~~~~~~~~~--aDvI~lav~~~ 82 (276)
|.++||||||+|.++ ...+..+.+.+.. ..-+.++ ||++++++.+.+ .|+. .+++.++++++ .|+|++|+|++
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~-~~~vav~-d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~ 78 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAALGGG-LELVAVV-DRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNA 78 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhCCCc-eEEEEEe-cCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCCh
Confidence 467899999999665 4577777775520 0134566 999999988877 7774 77788888775 59999999988
Q ss_pred cHHHHHHH
Q 023866 83 VDKAAVIT 90 (276)
Q Consensus 83 ~~~~vl~~ 90 (276)
...++...
T Consensus 79 ~H~e~~~~ 86 (342)
T COG0673 79 LHAELALA 86 (342)
T ss_pred hhHHHHHH
Confidence 65555443
No 136
>PRK07340 ornithine cyclodeaminase; Validated
Probab=98.25 E-value=5.7e-06 Score=72.21 Aligned_cols=72 Identities=24% Similarity=0.238 Sum_probs=57.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH----cCcee-ccCchhhhcCCCEEEEeeCccc
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IGVKV-LSDNNAVVEYSDVVVFSVKPQV 83 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~g~~~-~~~~~~~~~~aDvI~lav~~~~ 83 (276)
+..+++|||+|.+|...+..+.... +..+|.+| +|++++++.+.+ .++.+ ..+.++++.++|+||.|++...
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~--~~~~v~v~-~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~ 200 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGL--PVRRVWVR-GRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT 200 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhC--CCCEEEEE-cCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC
Confidence 4579999999999999999987531 23589999 999999887765 24333 3567788999999999998654
No 137
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.24 E-value=4.7e-06 Score=70.16 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=62.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhh-hcCCCEEEEeeCcccHHHHH
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAV-VEYSDVVVFSVKPQVDKAAV 88 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~-~~~aDvI~lav~~~~~~~vl 88 (276)
.+||||||||.||..+++.|.+.+. ..-++...++|++++.+.+... +.++.+.+++ ...+|+|+-|-.++.+++..
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~-~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A~~~av~e~~ 79 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAA-QPCQLAALTRNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAAGQQAIAEHA 79 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCC-CceEEEEEecCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECCCHHHHHHHH
Confidence 4799999999999999999865322 2225543339998888877664 6677788885 67899999999999998888
Q ss_pred HHHh
Q 023866 89 ITEE 92 (276)
Q Consensus 89 ~~~~ 92 (276)
..+.
T Consensus 80 ~~iL 83 (267)
T PRK13301 80 EGCL 83 (267)
T ss_pred HHHH
Confidence 7774
No 138
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.24 E-value=5e-06 Score=71.13 Aligned_cols=80 Identities=16% Similarity=0.142 Sum_probs=54.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCC--CHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHH
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAA 87 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r--~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~v 87 (276)
|+||||||+|+||..+++.+.+... -++...+++ +.++.......++.++++.+++..+.|+|+.|+++..+.+.
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~---~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~~e~ 77 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPD---LRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAALKEH 77 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCC---ceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHHHHH
Confidence 4799999999999999999876522 155433244 33332222223666777777664568999999999877777
Q ss_pred HHHHh
Q 023866 88 VITEE 92 (276)
Q Consensus 88 l~~~~ 92 (276)
.....
T Consensus 78 ~~~aL 82 (265)
T PRK13303 78 VVPIL 82 (265)
T ss_pred HHHHH
Confidence 66653
No 139
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.23 E-value=2.8e-06 Score=79.57 Aligned_cols=74 Identities=15% Similarity=0.332 Sum_probs=58.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHH
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKA 86 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~ 86 (276)
...++|||||+|+||+.+++.|...|. +|++| ||+... +.....|+... +..+++++||+|++++|.. ..+.
T Consensus 138 l~gktvgIiG~G~IG~~vA~~l~~fG~----~V~~~-d~~~~~-~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~ 210 (526)
T PRK13581 138 LYGKTLGIIGLGRIGSEVAKRAKAFGM----KVIAY-DPYISP-ERAAQLGVELV-SLDELLARADFITLHTPLTPETRG 210 (526)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-CCCCCh-hHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhhc
Confidence 356899999999999999999999998 99999 986432 23344677655 7889999999999999854 3444
Q ss_pred HH
Q 023866 87 AV 88 (276)
Q Consensus 87 vl 88 (276)
++
T Consensus 211 li 212 (526)
T PRK13581 211 LI 212 (526)
T ss_pred Cc
Confidence 44
No 140
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.22 E-value=2.5e-06 Score=73.43 Aligned_cols=60 Identities=20% Similarity=0.216 Sum_probs=49.6
Q ss_pred CCCCeEEEEccc-HHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc-ccHH
Q 023866 8 AESFILGFIGAG-KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVDK 85 (276)
Q Consensus 8 ~~~~kIgiIG~G-~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~-~~~~ 85 (276)
...++|+|||.| .||.+|+..|.++|+ .|++| +++.. ++.+++++||+||+|+.. ..+.
T Consensus 157 l~Gk~V~vIG~s~ivG~PmA~~L~~~ga----tVtv~-~~~t~--------------~l~e~~~~ADIVIsavg~~~~v~ 217 (301)
T PRK14194 157 LTGKHAVVIGRSNIVGKPMAALLLQAHC----SVTVV-HSRST--------------DAKALCRQADIVVAAVGRPRLID 217 (301)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCC----EEEEE-CCCCC--------------CHHHHHhcCCEEEEecCChhccc
Confidence 356899999996 999999999999999 99999 87632 567888999999999964 3343
Q ss_pred H
Q 023866 86 A 86 (276)
Q Consensus 86 ~ 86 (276)
+
T Consensus 218 ~ 218 (301)
T PRK14194 218 A 218 (301)
T ss_pred H
Confidence 3
No 141
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.21 E-value=6.4e-06 Score=71.71 Aligned_cols=78 Identities=12% Similarity=0.194 Sum_probs=52.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC-CCCCCCeEEEEeCCCH-HHHHHHHHcCceeccCchhhhcCCCEEEEeeCccc-H
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKS-GVLPPDRICTAVHSNL-KRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-D 84 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~-~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~-~ 84 (276)
|+++||+|||+|+||..++..+.+. ++ ++..+++|++ ++.. ...++....+..+...+.|+|++|+|+.. .
T Consensus 1 M~kIRVgIVG~GnIGr~~a~al~~~pd~----ELVgV~dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th~ 74 (324)
T TIGR01921 1 MSKIRAAIVGYGNLGRSVEKAIQQQPDM----ELVGVFSRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATDI 74 (324)
T ss_pred CCCcEEEEEeecHHHHHHHHHHHhCCCc----EEEEEEcCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccCH
Confidence 3468999999999999999988764 44 7664338885 4332 12343333455566788999999998654 3
Q ss_pred HHHHHHH
Q 023866 85 KAAVITE 91 (276)
Q Consensus 85 ~~vl~~~ 91 (276)
..+...+
T Consensus 75 ~~~~~~L 81 (324)
T TIGR01921 75 PEQAPYF 81 (324)
T ss_pred HHHHHHH
Confidence 3443333
No 142
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=98.21 E-value=8.1e-06 Score=69.86 Aligned_cols=100 Identities=19% Similarity=0.222 Sum_probs=67.5
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHh-CCCCCCCeEEEEeCCC-HHHH-HHHHH------cCceeccCchhhhcCCCEEEEee
Q 023866 10 SFILGFIG-AGKMAESIAKGVAK-SGVLPPDRICTAVHSN-LKRR-DAFES------IGVKVLSDNNAVVEYSDVVVFSV 79 (276)
Q Consensus 10 ~~kIgiIG-~G~mG~~la~~l~~-~g~~~~~~V~v~~~r~-~~~~-~~l~~------~g~~~~~~~~~~~~~aDvI~lav 79 (276)
++||+++| +|.||..+++.+.+ .++ ++...++|. ++.. +.+.+ .|+.++++.+++...+|+||.++
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~----elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT 76 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEGL----QLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFT 76 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCC----EEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECC
Confidence 37999999 69999999999875 355 666433853 3221 11211 35666677777655689999999
Q ss_pred CcccHHHHHHHHhhccccccCCcccCCCCcccHHHHHHH
Q 023866 80 KPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEW 118 (276)
Q Consensus 80 ~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~ 118 (276)
+|....+.+....+.| .+++..+.|. +.++.+++
T Consensus 77 ~p~~~~~~~~~al~~g----~~vVigttg~-~~e~~~~l 110 (266)
T TIGR00036 77 TPEGVLNHLKFALEHG----VRLVVGTTGF-SEEDKQEL 110 (266)
T ss_pred ChHHHHHHHHHHHHCC----CCEEEECCCC-CHHHHHHH
Confidence 9998887777664333 5667655677 76655443
No 143
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.21 E-value=2.8e-05 Score=63.35 Aligned_cols=150 Identities=14% Similarity=0.060 Sum_probs=98.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH-----------HHHcC--------------ceec
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-----------FESIG--------------VKVL 62 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~-----------l~~~g--------------~~~~ 62 (276)
|..-||+|+|.|.+|++.|.-+...|| +|..| |..++.++. +.+.| +..+
T Consensus 1 ms~~ki~ivgSgl~g~~WAmlFAs~Gy----qVqlY-DI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t 75 (313)
T KOG2305|consen 1 MSFGKIAIVGSGLVGSSWAMLFASSGY----QVQLY-DILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGT 75 (313)
T ss_pred CCccceeEeecccccchHHHHHhccCc----eEEEe-eccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCC
Confidence 345799999999999999999999999 99999 998876432 22222 2345
Q ss_pred cCchhhhcCCCEEEEeeCcc-cH-HHHHHHHhhccccccCCcccC-CCCcccHHHHHHHc-CCCcEEEEecCccccccCc
Q 023866 63 SDNNAVVEYSDVVVFSVKPQ-VD-KAAVITEEAFGFCCCRSEIER-PSGLQRWSRWVEWT-GHSRFIRVMPNTPSAVGEA 138 (276)
Q Consensus 63 ~~~~~~~~~aDvI~lav~~~-~~-~~vl~~~~~~~~~~~~~~l~~-~~g~~~~~~l~~~l-~~~~vv~~~p~~~~~~~~g 138 (276)
++..|+++.+=.|=-|+|-+ .+ ++++.++. .+..+..++++ .+.. ..+.+..-+ ...+++-+||..|..+--
T Consensus 76 ~~l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD--~i~d~~tIlaSSTSt~-mpS~~s~gL~~k~q~lvaHPvNPPyfiP- 151 (313)
T KOG2305|consen 76 TSLNELVKGAIHIQECVPEDLNLKKQLYKQLD--EIADPTTILASSTSTF-MPSKFSAGLINKEQCLVAHPVNPPYFIP- 151 (313)
T ss_pred ccHHHHHhhhhhHHhhchHhhHHHHHHHHHHH--HhcCCceEEecccccc-ChHHHhhhhhhhhheeEecCCCCCcccc-
Confidence 67788888887777788754 23 34444441 11111334433 2444 344443333 235777788866554322
Q ss_pred ceEeecCCCCCHHHHHHHHHHhhhcCce
Q 023866 139 ATVMSLGGTATEEDGELIGKLFGSVGKI 166 (276)
Q Consensus 139 ~~~i~~~~~~~~~~~~~v~~ll~~~G~~ 166 (276)
.+-+++.+-++++..++..++++.+|..
T Consensus 152 LvElVPaPwTsp~tVdrt~~lM~sigq~ 179 (313)
T KOG2305|consen 152 LVELVPAPWTSPDTVDRTRALMRSIGQE 179 (313)
T ss_pred hheeccCCCCChhHHHHHHHHHHHhCCC
Confidence 2235677778899999999999999954
No 144
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.20 E-value=6.7e-06 Score=63.48 Aligned_cols=66 Identities=23% Similarity=0.402 Sum_probs=51.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH----H----c--CceeccCchhhhcCCCEEEEee
Q 023866 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S----I--GVKVLSDNNAVVEYSDVVVFSV 79 (276)
Q Consensus 11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~----~----~--g~~~~~~~~~~~~~aDvI~lav 79 (276)
|||+|||+ |++|+.++..|...++ ..++.++ |+++++++-.. . . ...+..+..+.+++||+|+++.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l--~~ei~L~-D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvita 77 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGL--ADEIVLI-DINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITA 77 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTT--SSEEEEE-ESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC--CCceEEe-ccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEec
Confidence 69999999 9999999999998876 3479999 99987654322 2 1 2334445667789999999986
No 145
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.20 E-value=2.8e-06 Score=76.05 Aligned_cols=64 Identities=14% Similarity=0.216 Sum_probs=51.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP 81 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~ 81 (276)
...++|||||+|+||+.+++.+...|+ +|.+| |+..... .+.....+.++++++||+|++++|-
T Consensus 114 l~gktvGIIG~G~IG~~va~~l~a~G~----~V~~~-Dp~~~~~-----~~~~~~~~l~ell~~aDiV~lh~Pl 177 (381)
T PRK00257 114 LAERTYGVVGAGHVGGRLVRVLRGLGW----KVLVC-DPPRQEA-----EGDGDFVSLERILEECDVISLHTPL 177 (381)
T ss_pred cCcCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-CCccccc-----ccCccccCHHHHHhhCCEEEEeCcC
Confidence 356899999999999999999999998 99999 8754321 1222234678889999999999984
No 146
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=98.20 E-value=8.2e-06 Score=71.01 Aligned_cols=71 Identities=23% Similarity=0.359 Sum_probs=59.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----cC--ceeccCchhhhcCCCEEEEeeCc
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IG--VKVLSDNNAVVEYSDVVVFSVKP 81 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g--~~~~~~~~~~~~~aDvI~lav~~ 81 (276)
+..+++|||+|..|...+..+..- .+..+|.+| +|++++++.+.+ .| +..+.+.++++.+||||+.+++.
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v--~~i~~v~v~-~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s 192 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASV--YNPKRIRVY-SRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNS 192 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc--CCCCEEEEE-CCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCC
Confidence 457899999999999999988764 256799999 999999887764 25 44567899999999999999975
Q ss_pred c
Q 023866 82 Q 82 (276)
Q Consensus 82 ~ 82 (276)
.
T Consensus 193 ~ 193 (301)
T PRK06407 193 D 193 (301)
T ss_pred C
Confidence 4
No 147
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=98.18 E-value=9.4e-06 Score=71.57 Aligned_cols=70 Identities=16% Similarity=0.248 Sum_probs=56.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHh-CCCCCCCeEEEEeCCCHHHHHHHHH-----cCce--eccCchhhhcCCCEEEEeeC
Q 023866 9 ESFILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRRDAFES-----IGVK--VLSDNNAVVEYSDVVVFSVK 80 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~-~g~~~~~~V~v~~~r~~~~~~~l~~-----~g~~--~~~~~~~~~~~aDvI~lav~ 80 (276)
+..+++|||+|.+|...+..|.. .+ ..+|++| +|++++++.+.+ .|+. ...+.++++.+||+|+.|++
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~---i~~v~V~-~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~ 203 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRD---IRSARIW-ARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTP 203 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCC---ccEEEEE-CCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecC
Confidence 45789999999999999999974 33 2589999 999999887765 2554 35667788999999999997
Q ss_pred cc
Q 023866 81 PQ 82 (276)
Q Consensus 81 ~~ 82 (276)
..
T Consensus 204 s~ 205 (326)
T TIGR02992 204 SE 205 (326)
T ss_pred CC
Confidence 64
No 148
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=98.18 E-value=5.2e-06 Score=75.24 Aligned_cols=70 Identities=20% Similarity=0.289 Sum_probs=56.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cC-cee--ccCchhhhcCCCEEEEeeCcc
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG-VKV--LSDNNAVVEYSDVVVFSVKPQ 82 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g-~~~--~~~~~~~~~~aDvI~lav~~~ 82 (276)
..+||.|||+|.||..++.+|.+.|. .+|+++ +|+.++++.+.+ .+ ... .++..+.+.++|+||.|+...
T Consensus 180 ~~kkvlviGaG~~a~~va~~L~~~g~---~~I~V~-nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~ 253 (414)
T PRK13940 180 SSKNVLIIGAGQTGELLFRHVTALAP---KQIMLA-NRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL 253 (414)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHcCC---CEEEEE-CCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC
Confidence 45799999999999999999998885 379999 999999988877 44 322 244467788999999999643
No 149
>PRK08291 ectoine utilization protein EutC; Validated
Probab=98.18 E-value=9.2e-06 Score=71.77 Aligned_cols=71 Identities=18% Similarity=0.302 Sum_probs=56.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----cCce--eccCchhhhcCCCEEEEeeCc
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGVK--VLSDNNAVVEYSDVVVFSVKP 81 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g~~--~~~~~~~~~~~aDvI~lav~~ 81 (276)
+.++|+|||+|.+|.+.+..+.... +..+|++| +|++++++.+.+ .|+. ...+.++++.++|+|+.|++.
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~--~~~~V~v~-~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s 207 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVR--PIREVRVW-ARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPS 207 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC--CCCEEEEE-cCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCC
Confidence 4479999999999999999887532 12489999 999999988765 2554 356777889999999999976
Q ss_pred c
Q 023866 82 Q 82 (276)
Q Consensus 82 ~ 82 (276)
+
T Consensus 208 ~ 208 (330)
T PRK08291 208 E 208 (330)
T ss_pred C
Confidence 5
No 150
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=98.16 E-value=8e-06 Score=71.57 Aligned_cols=72 Identities=24% Similarity=0.360 Sum_probs=50.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH----cCc--eeccCchhhhcCCCEEEEeeCcc
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IGV--KVLSDNNAVVEYSDVVVFSVKPQ 82 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~g~--~~~~~~~~~~~~aDvI~lav~~~ 82 (276)
+..+++|||+|..|...+..+... .+.++|.+| +|++++++.+.+ .++ ..+.+.++++++||+|+.|++..
T Consensus 127 ~~~~l~viGaG~QA~~~~~a~~~~--~~i~~v~v~-~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~ 203 (313)
T PF02423_consen 127 DARTLGVIGAGVQARWHLRALAAV--RPIKEVRVY-SRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPST 203 (313)
T ss_dssp T--EEEEE--SHHHHHHHHHHHHH--S--SEEEEE--SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----S
T ss_pred CCceEEEECCCHHHHHHHHHHHHh--CCceEEEEE-ccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCC
Confidence 446899999999999999988764 245799999 999999888775 243 45678899999999999999765
Q ss_pred c
Q 023866 83 V 83 (276)
Q Consensus 83 ~ 83 (276)
.
T Consensus 204 ~ 204 (313)
T PF02423_consen 204 T 204 (313)
T ss_dssp S
T ss_pred C
Confidence 4
No 151
>PRK06823 ornithine cyclodeaminase; Validated
Probab=98.16 E-value=1.3e-05 Score=70.21 Aligned_cols=71 Identities=11% Similarity=0.175 Sum_probs=58.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH----cCc--eeccCchhhhcCCCEEEEeeCcc
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IGV--KVLSDNNAVVEYSDVVVFSVKPQ 82 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~g~--~~~~~~~~~~~~aDvI~lav~~~ 82 (276)
+..+++|||+|..+...++.+... . +.++|++| +|++++++.+.+ .++ ..+++.++++++||+|+.|++..
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v-~-~i~~v~v~-~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~ 203 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV-T-DCRQLWVW-GRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSR 203 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc-C-CCCEEEEE-CCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCC
Confidence 457899999999999999988764 2 56799999 999999887664 244 34678889999999999999754
No 152
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=98.15 E-value=6.9e-06 Score=73.55 Aligned_cols=68 Identities=31% Similarity=0.461 Sum_probs=57.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCcee--ccCchhhhcCCCEEEEeeC
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV--LSDNNAVVEYSDVVVFSVK 80 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~--~~~~~~~~~~aDvI~lav~ 80 (276)
...++.|||+|-||...+++|.++|. .+|++. ||+.++++.|.+ .|..+ .++..+.+.++|+||.|+-
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~---~~i~Ia-NRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs 247 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGV---KKITIA-NRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS 247 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCC---CEEEEE-cCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC
Confidence 45789999999999999999999985 489999 999999999887 66443 3555677889999999984
No 153
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.13 E-value=7.5e-06 Score=74.58 Aligned_cols=69 Identities=26% Similarity=0.402 Sum_probs=54.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCcee--ccCchhhhcCCCEEEEeeCc
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV--LSDNNAVVEYSDVVVFSVKP 81 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~--~~~~~~~~~~aDvI~lav~~ 81 (276)
...+|+|||+|.||..++..|...|. .+|+++ +|++++++.+.+ .|... ..+..+.+..+|+||.|++.
T Consensus 179 ~~~~VlViGaG~iG~~~a~~L~~~G~---~~V~v~-~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s 250 (417)
T TIGR01035 179 KGKKALLIGAGEMGELVAKHLLRKGV---GKILIA-NRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGA 250 (417)
T ss_pred cCCEEEEECChHHHHHHHHHHHHCCC---CEEEEE-eCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCC
Confidence 45799999999999999999998883 289999 999998876665 45322 23455678899999999853
No 154
>PLN02928 oxidoreductase family protein
Probab=98.11 E-value=7e-06 Score=72.89 Aligned_cols=68 Identities=15% Similarity=0.092 Sum_probs=51.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHH------------HHcCceeccCchhhhcCCCEE
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF------------ESIGVKVLSDNNAVVEYSDVV 75 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l------------~~~g~~~~~~~~~~~~~aDvI 75 (276)
...++|||||+|.||+.+|+.|...|. +|++| +|+..+.... ...+. ...+..+++++||+|
T Consensus 157 l~gktvGIiG~G~IG~~vA~~l~afG~----~V~~~-dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiV 230 (347)
T PLN02928 157 LFGKTVFILGYGAIGIELAKRLRPFGV----KLLAT-RRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIV 230 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhhCCC----EEEEE-CCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCEE
Confidence 456899999999999999999998898 99999 9874321111 00111 234678899999999
Q ss_pred EEeeCc
Q 023866 76 VFSVKP 81 (276)
Q Consensus 76 ~lav~~ 81 (276)
++++|-
T Consensus 231 vl~lPl 236 (347)
T PLN02928 231 VLCCTL 236 (347)
T ss_pred EECCCC
Confidence 999983
No 155
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=98.11 E-value=9.1e-06 Score=74.22 Aligned_cols=69 Identities=29% Similarity=0.430 Sum_probs=55.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCcee--ccCchhhhcCCCEEEEeeCc
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV--LSDNNAVVEYSDVVVFSVKP 81 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~--~~~~~~~~~~aDvI~lav~~ 81 (276)
..++|+|||+|.||..++..|...|. .+|+++ +|++++++.+.+ .|... ..+..+.+.++|+||.|++.
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~---~~V~v~-~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s 252 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGV---RKITVA-NRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGA 252 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCC---CeEEEE-eCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCC
Confidence 45799999999999999999988775 479999 999999887765 55332 23455667899999999964
No 156
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.10 E-value=2.2e-05 Score=61.29 Aligned_cols=78 Identities=17% Similarity=0.153 Sum_probs=57.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccH--H
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVD--K 85 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~--~ 85 (276)
...+++.++|.|..|+.+|+.|...|- +|+|+ +++|-++-++...|..+. +.++++..+|++|.++-...+ .
T Consensus 21 l~Gk~vvV~GYG~vG~g~A~~lr~~Ga----~V~V~-e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG~~~vi~~ 94 (162)
T PF00670_consen 21 LAGKRVVVIGYGKVGKGIARALRGLGA----RVTVT-EIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATGNKDVITG 94 (162)
T ss_dssp -TTSEEEEE--SHHHHHHHHHHHHTT-----EEEEE--SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SSSSSSB-H
T ss_pred eCCCEEEEeCCCcccHHHHHHHhhCCC----EEEEE-ECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCCCccccCH
Confidence 346789999999999999999999998 99999 999987766666788875 578889999999999966543 4
Q ss_pred HHHHHH
Q 023866 86 AAVITE 91 (276)
Q Consensus 86 ~vl~~~ 91 (276)
+-+.++
T Consensus 95 e~~~~m 100 (162)
T PF00670_consen 95 EHFRQM 100 (162)
T ss_dssp HHHHHS
T ss_pred HHHHHh
Confidence 666666
No 157
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.10 E-value=6.3e-06 Score=72.27 Aligned_cols=74 Identities=15% Similarity=0.274 Sum_probs=56.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHHH
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKAA 87 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~v 87 (276)
..+++||||+|++|+.++..+..-|. +|.+| |+...+. .....+.....+.++++++||+|++.+|-. ..+.+
T Consensus 141 ~gkTvGIiG~G~IG~~va~~l~afgm----~v~~~-d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~ 214 (324)
T COG0111 141 AGKTVGIIGLGRIGRAVAKRLKAFGM----KVIGY-DPYSPRE-RAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGL 214 (324)
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCC----eEEEE-CCCCchh-hhccccceecccHHHHHhhCCEEEEcCCCCcchhcc
Confidence 36899999999999999999999999 99999 9833321 112245555577899999999999999843 34444
Q ss_pred H
Q 023866 88 V 88 (276)
Q Consensus 88 l 88 (276)
+
T Consensus 215 i 215 (324)
T COG0111 215 I 215 (324)
T ss_pred c
Confidence 4
No 158
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.09 E-value=8.2e-06 Score=71.51 Aligned_cols=67 Identities=16% Similarity=0.359 Sum_probs=52.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ 82 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~ 82 (276)
..+++||||+|++|.++|+.+..-|. +|..| +|++. .+.-+..+..... ..+++++||+|.+.+|..
T Consensus 145 ~gktvGIiG~GrIG~avA~r~~~Fgm----~v~y~-~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt 211 (324)
T COG1052 145 RGKTLGIIGLGRIGQAVARRLKGFGM----KVLYY-DRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLT 211 (324)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCCC----EEEEE-CCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCC
Confidence 46899999999999999999875555 88888 98875 2222334555544 889999999999999853
No 159
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=98.08 E-value=3e-05 Score=66.96 Aligned_cols=83 Identities=11% Similarity=0.112 Sum_probs=59.5
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHH--HHHHHcCcee-ccCchhhhc-----CCCEEEEe
Q 023866 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR--DAFESIGVKV-LSDNNAVVE-----YSDVVVFS 78 (276)
Q Consensus 7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~--~~l~~~g~~~-~~~~~~~~~-----~aDvI~la 78 (276)
+|+++||||||+|++|..++..+.+... -++...+++++++. +..++.|+.. +.+.+++++ +.|+||.+
T Consensus 1 ~m~klrVAIIGtG~IGt~hm~~l~~~~~---velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~A 77 (302)
T PRK08300 1 MMSKLKVAIIGSGNIGTDLMIKILRSEH---LEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDA 77 (302)
T ss_pred CCCCCeEEEEcCcHHHHHHHHHHhcCCC---cEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEEC
Confidence 3677999999999999998888876422 26664349988642 4444578865 356666664 58999999
Q ss_pred eCcccHHHHHHHHh
Q 023866 79 VKPQVDKAAVITEE 92 (276)
Q Consensus 79 v~~~~~~~vl~~~~ 92 (276)
+++....+......
T Consensus 78 T~a~~H~e~a~~a~ 91 (302)
T PRK08300 78 TSAGAHVRHAAKLR 91 (302)
T ss_pred CCHHHHHHHHHHHH
Confidence 99887776666553
No 160
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.08 E-value=1.2e-05 Score=70.23 Aligned_cols=67 Identities=21% Similarity=0.320 Sum_probs=50.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH--------cC--ceeccCchhhhcCCCEEEEeeC
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------IG--VKVLSDNNAVVEYSDVVVFSVK 80 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------~g--~~~~~~~~~~~~~aDvI~lav~ 80 (276)
+||+|||+|.+|++++..|...|. ..+|.++ ||++++++.+.. .+ ..+.....+.+.+||+||+++.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~--~~ei~l~-D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag 77 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGI--ADELVLI-DINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAG 77 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC--CCEEEEE-eCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccC
Confidence 489999999999999999998884 1289999 999888765443 12 2233334455789999999984
No 161
>PRK11579 putative oxidoreductase; Provisional
Probab=98.08 E-value=4.1e-05 Score=68.17 Aligned_cols=76 Identities=17% Similarity=0.268 Sum_probs=53.8
Q ss_pred CCeEEEEcccHHHHH-HHHHHHhC-CCCCCCeEEEEeCCCHHHHHHHHHc-CceeccCchhhhc--CCCEEEEeeCcccH
Q 023866 10 SFILGFIGAGKMAES-IAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESI-GVKVLSDNNAVVE--YSDVVVFSVKPQVD 84 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~-la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~~-g~~~~~~~~~~~~--~aDvI~lav~~~~~ 84 (276)
++||||||+|.||.. .+..+.+. +. ++..++++++++.. .+. +...+.+.+++++ +.|+|++|+|+...
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~----~l~av~d~~~~~~~--~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H 77 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGL----ELAAVSSSDATKVK--ADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTH 77 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCC----EEEEEECCCHHHHH--hhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence 579999999999984 55655543 34 66643399987654 233 5566788888885 57999999998865
Q ss_pred HHHHHHH
Q 023866 85 KAAVITE 91 (276)
Q Consensus 85 ~~vl~~~ 91 (276)
.++....
T Consensus 78 ~~~~~~a 84 (346)
T PRK11579 78 FPLAKAA 84 (346)
T ss_pred HHHHHHH
Confidence 5555444
No 162
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.07 E-value=1.3e-05 Score=70.21 Aligned_cols=67 Identities=19% Similarity=0.296 Sum_probs=49.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH----HHHc-----CceeccCchhhhcCCCEEEEeeC
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FESI-----GVKVLSDNNAVVEYSDVVVFSVK 80 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~~-----g~~~~~~~~~~~~~aDvI~lav~ 80 (276)
|||+|||+|.+|.+++..|...|+ ..+|.++ |+++++++. +... ...+..+..+.+++||+||++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~--~~ev~l~-D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~ 76 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGL--ASEIVLV-DINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAG 76 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CCEEEEE-ECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccC
Confidence 689999999999999999999884 2378999 999877653 2221 11222234466899999999985
No 163
>PRK06046 alanine dehydrogenase; Validated
Probab=98.07 E-value=1.9e-05 Score=69.58 Aligned_cols=71 Identities=18% Similarity=0.307 Sum_probs=56.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----cCc--eeccCchhhhcCCCEEEEeeCc
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGV--KVLSDNNAVVEYSDVVVFSVKP 81 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g~--~~~~~~~~~~~~aDvI~lav~~ 81 (276)
+..+++|||+|.+|...+..+.... +..+|.+| +|++++.+.+.+ .+. ....+.+++++ +|+|++|+|.
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~--~i~~v~v~-~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps 203 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVF--DLEEVRVY-DRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPS 203 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhC--CceEEEEE-CCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCC
Confidence 4579999999999999999987542 34588999 999999887665 253 44667778776 9999999986
Q ss_pred cc
Q 023866 82 QV 83 (276)
Q Consensus 82 ~~ 83 (276)
..
T Consensus 204 ~~ 205 (326)
T PRK06046 204 RK 205 (326)
T ss_pred CC
Confidence 53
No 164
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.06 E-value=9.3e-06 Score=72.52 Aligned_cols=64 Identities=13% Similarity=0.257 Sum_probs=50.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeC
Q 023866 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK 80 (276)
Q Consensus 7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~ 80 (276)
....++|||||+|+||+.+++.|..-|. +|.+| |+..... .... ...+.++++++||+|++.+|
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~----~V~~~-dp~~~~~----~~~~-~~~~L~ell~~sDiI~lh~P 176 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGI----KTLLC-DPPRADR----GDEG-DFRSLDELVQEADILTFHTP 176 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-CCccccc----cccc-ccCCHHHHHhhCCEEEEeCC
Confidence 3467899999999999999999999998 99999 8743211 1111 23578899999999999887
No 165
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=98.05 E-value=2.7e-05 Score=64.95 Aligned_cols=76 Identities=17% Similarity=0.307 Sum_probs=60.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH--cCcee---ccCch----hh-hcCCCEEEEeeC
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--IGVKV---LSDNN----AV-VEYSDVVVFSVK 80 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--~g~~~---~~~~~----~~-~~~aDvI~lav~ 80 (276)
|+|.|||+|.+|..+|+.|.+.|+ +|.++ +++++++++... .+..+ ..+.. ++ +.++|+++.++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~----~Vv~I-d~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~ 75 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH----NVVLI-DRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATG 75 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC----ceEEE-EcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence 689999999999999999999999 99999 999999888444 44332 12222 22 568999999998
Q ss_pred cccHHHHHHHH
Q 023866 81 PQVDKAAVITE 91 (276)
Q Consensus 81 ~~~~~~vl~~~ 91 (276)
.+....++..+
T Consensus 76 ~d~~N~i~~~l 86 (225)
T COG0569 76 NDEVNSVLALL 86 (225)
T ss_pred CCHHHHHHHHH
Confidence 88777776655
No 166
>PRK06199 ornithine cyclodeaminase; Validated
Probab=98.04 E-value=2.4e-05 Score=70.19 Aligned_cols=71 Identities=25% Similarity=0.341 Sum_probs=57.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----c-C---ceeccCchhhhcCCCEEEEee
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----I-G---VKVLSDNNAVVEYSDVVVFSV 79 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~-g---~~~~~~~~~~~~~aDvI~lav 79 (276)
+..+++|||+|.++...+..+..--- ..++|++| +|++++++.+.+ . + +.++.+.++++++||||+.|+
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~~-~i~~V~v~-~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT 231 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVCP-GIDTIKIK-GRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCN 231 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcC-CccEEEEE-CCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEcc
Confidence 45789999999999999998876320 14699999 999999887654 2 3 446788999999999999999
Q ss_pred Cc
Q 023866 80 KP 81 (276)
Q Consensus 80 ~~ 81 (276)
+.
T Consensus 232 ~s 233 (379)
T PRK06199 232 SG 233 (379)
T ss_pred CC
Confidence 63
No 167
>PRK08618 ornithine cyclodeaminase; Validated
Probab=98.03 E-value=2.6e-05 Score=68.73 Aligned_cols=72 Identities=18% Similarity=0.296 Sum_probs=56.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----cCc--eeccCchhhhcCCCEEEEeeCc
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGV--KVLSDNNAVVEYSDVVVFSVKP 81 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g~--~~~~~~~~~~~~aDvI~lav~~ 81 (276)
+..+++|||+|.+|...+..+.... +..+|.+| +|++++.+.+.+ .++ ....+.++++.++|+|+.|+|.
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~--~~~~v~v~-~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s 202 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVR--DIERVRVY-SRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNA 202 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcC--CccEEEEE-CCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCC
Confidence 4578999999999999988876431 23589999 999999887765 244 3456778889999999999986
Q ss_pred cc
Q 023866 82 QV 83 (276)
Q Consensus 82 ~~ 83 (276)
..
T Consensus 203 ~~ 204 (325)
T PRK08618 203 KT 204 (325)
T ss_pred CC
Confidence 53
No 168
>PRK07589 ornithine cyclodeaminase; Validated
Probab=98.03 E-value=2.6e-05 Score=69.03 Aligned_cols=72 Identities=15% Similarity=0.119 Sum_probs=58.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH----cC--ceeccCchhhhcCCCEEEEeeCcc
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IG--VKVLSDNNAVVEYSDVVVFSVKPQ 82 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~g--~~~~~~~~~~~~~aDvI~lav~~~ 82 (276)
+..+++|||+|..+...++.+..-- +..+|++| +|++++++.+.+ .+ +..+.+.++++++||+|+.|++..
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr--~i~~V~v~-~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~ 204 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALL--GIEEIRLY-DIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK 204 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhC--CceEEEEE-eCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC
Confidence 4578999999999999988877642 55799999 999999887664 24 445678899999999999999754
Q ss_pred c
Q 023866 83 V 83 (276)
Q Consensus 83 ~ 83 (276)
.
T Consensus 205 ~ 205 (346)
T PRK07589 205 T 205 (346)
T ss_pred C
Confidence 3
No 169
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=98.03 E-value=3e-05 Score=67.88 Aligned_cols=72 Identities=22% Similarity=0.263 Sum_probs=59.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH----c-C--ceeccCchhhhcCCCEEEEeeCc
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----I-G--VKVLSDNNAVVEYSDVVVFSVKP 81 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~-g--~~~~~~~~~~~~~aDvI~lav~~ 81 (276)
+...++|||+|.++...+..+.+- .+..+|.+| +|++++.+.+.. . + +..+.+.+++++.||+|+.|++.
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v--~~~~~I~i~-~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s 205 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAV--RDIREIRVY-SRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPS 205 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhh--CCccEEEEE-cCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCC
Confidence 457899999999999999988753 356799999 999999887764 2 3 45667888999999999999986
Q ss_pred cc
Q 023866 82 QV 83 (276)
Q Consensus 82 ~~ 83 (276)
..
T Consensus 206 ~~ 207 (330)
T COG2423 206 TE 207 (330)
T ss_pred CC
Confidence 65
No 170
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.02 E-value=2e-05 Score=70.17 Aligned_cols=78 Identities=19% Similarity=0.241 Sum_probs=62.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcC---cee-----c--cCchhhhcCCCEEEEee
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG---VKV-----L--SDNNAVVEYSDVVVFSV 79 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g---~~~-----~--~~~~~~~~~aDvI~lav 79 (276)
|++|-+||+|.+|+.++..|.+.|- .+|++. +|++++++++.... ++. . ....+++++.|+||-|.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d---~~V~iA-dRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGD---GEVTIA-DRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCC---ceEEEE-eCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 5899999999999999999999882 299999 99999999887642 321 1 12346688899999999
Q ss_pred CcccHHHHHHHH
Q 023866 80 KPQVDKAAVITE 91 (276)
Q Consensus 80 ~~~~~~~vl~~~ 91 (276)
|+..-..+++..
T Consensus 77 p~~~~~~i~ka~ 88 (389)
T COG1748 77 PPFVDLTILKAC 88 (389)
T ss_pred CchhhHHHHHHH
Confidence 998776776544
No 171
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.00 E-value=1.7e-05 Score=69.65 Aligned_cols=67 Identities=18% Similarity=0.275 Sum_probs=51.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHH-hCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866 8 AESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP 81 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~-~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~ 81 (276)
...+++||||+|++|..+++.+. .-|. +|..| +|.... +.....++.. .+.++++++||+|++++|-
T Consensus 143 L~gktvGIiG~G~IG~~va~~l~~~fgm----~V~~~-~~~~~~-~~~~~~~~~~-~~l~ell~~sDvv~lh~pl 210 (323)
T PRK15409 143 VHHKTLGIVGMGRIGMALAQRAHFGFNM----PILYN-ARRHHK-EAEERFNARY-CDLDTLLQESDFVCIILPL 210 (323)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHhcCCC----EEEEE-CCCCch-hhHHhcCcEe-cCHHHHHHhCCEEEEeCCC
Confidence 45689999999999999999886 5566 88877 876422 2223356654 4788999999999999984
No 172
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=97.97 E-value=1.4e-05 Score=73.00 Aligned_cols=76 Identities=18% Similarity=0.300 Sum_probs=53.9
Q ss_pred CeEEEEcccHHHHHHHH--HHHhC-CCCCCCeEEEEeCCCHHHHHHHHH--------cC----ceeccCchhhhcCCCEE
Q 023866 11 FILGFIGAGKMAESIAK--GVAKS-GVLPPDRICTAVHSNLKRRDAFES--------IG----VKVLSDNNAVVEYSDVV 75 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~--~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~aDvI 75 (276)
+||+|||+|.||.+++. .++.. . ....+|.+| |+++++++.... .+ +..++|..+++++||+|
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~-~~g~eV~L~-Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~V 78 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPE-LSGSTIALM-DIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFV 78 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCC-CCCCEEEEE-CCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEE
Confidence 58999999999998665 45422 1 122389999 999988765442 12 33456667889999999
Q ss_pred EEeeCcccHHHHH
Q 023866 76 VFSVKPQVDKAAV 88 (276)
Q Consensus 76 ~lav~~~~~~~vl 88 (276)
|.+++....+...
T Consensus 79 i~ai~~~~~~~~~ 91 (423)
T cd05297 79 INTIQVGGHEYTE 91 (423)
T ss_pred EEeeEecCccchh
Confidence 9999876554443
No 173
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.97 E-value=1.5e-05 Score=72.27 Aligned_cols=72 Identities=18% Similarity=0.224 Sum_probs=55.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHH
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKA 86 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~ 86 (276)
...++|||||+|++|+.+|+.+..-|. +|..| ||++.. ...++....+.+++++.||+|++.+|-. ..+.
T Consensus 149 L~gktvGIiG~G~IG~~vA~~~~~fGm----~V~~~-d~~~~~----~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~ 219 (409)
T PRK11790 149 VRGKTLGIVGYGHIGTQLSVLAESLGM----RVYFY-DIEDKL----PLGNARQVGSLEELLAQSDVVSLHVPETPSTKN 219 (409)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-CCCccc----ccCCceecCCHHHHHhhCCEEEEcCCCChHHhh
Confidence 456899999999999999999998898 99999 986431 1123444557899999999999999843 3444
Q ss_pred HH
Q 023866 87 AV 88 (276)
Q Consensus 87 vl 88 (276)
++
T Consensus 220 li 221 (409)
T PRK11790 220 MI 221 (409)
T ss_pred cc
Confidence 43
No 174
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.95 E-value=3.7e-05 Score=66.40 Aligned_cols=69 Identities=20% Similarity=0.239 Sum_probs=53.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-c----C-cee--ccCchhhhcCCCEEEEeeC
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I----G-VKV--LSDNNAVVEYSDVVVFSVK 80 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~----g-~~~--~~~~~~~~~~aDvI~lav~ 80 (276)
..+++.|||+|.+|++++..|.+.|. .+|+++ ||+.++++.+.+ . . ..+ ..+..+.+.++|+||-|+|
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~---~~I~I~-nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp 201 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGV---ERLTIF-DVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATP 201 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCC---CEEEEE-CCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCc
Confidence 44789999999999999999999885 479999 999999988765 1 1 222 1223345678999999987
Q ss_pred c
Q 023866 81 P 81 (276)
Q Consensus 81 ~ 81 (276)
.
T Consensus 202 ~ 202 (284)
T PRK12549 202 T 202 (284)
T ss_pred C
Confidence 4
No 175
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=97.94 E-value=3.1e-05 Score=66.77 Aligned_cols=147 Identities=17% Similarity=0.150 Sum_probs=86.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCC--C-CCCCeEEEEeCCCHHH---HHHHHH------------------cCceecc
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSG--V-LPPDRICTAVHSNLKR---RDAFES------------------IGVKVLS 63 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g--~-~~~~~V~v~~~r~~~~---~~~l~~------------------~g~~~~~ 63 (276)
++..||+|||.|+.|+++++-+.+.- + .-..+|..| -+..+. .+.|.+ .++...+
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmw-v~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~ 97 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMW-VFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVP 97 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEE-EeccccCChhHHHHHHhccccccccccCCccCCCCeEecc
Confidence 34589999999999999998765421 1 112357777 332211 112221 1344567
Q ss_pred CchhhhcCCCEEEEeeCcccHHHHHHHHhhccccccCCcccCC-------CCc---------c-cHHHHHHHcCCCcE-E
Q 023866 64 DNNAVVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERP-------SGL---------Q-RWSRWVEWTGHSRF-I 125 (276)
Q Consensus 64 ~~~~~~~~aDvI~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~-------~g~---------~-~~~~l~~~l~~~~v-v 125 (276)
|..+++.++|+++..+|+|.+..+++++ ..++.+. .|+ . -.+.+.+.++ .++ +
T Consensus 98 dl~ea~~dADilvf~vPhQf~~~ic~~l--------~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lg-I~~~v 168 (372)
T KOG2711|consen 98 DLVEAAKDADILVFVVPHQFIPRICEQL--------KGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALG-IPCSV 168 (372)
T ss_pred hHHHHhccCCEEEEeCChhhHHHHHHHH--------hcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhC-CCcee
Confidence 7889999999999999999999999999 3334332 333 0 1244555554 222 2
Q ss_pred EEecCccccccCcc---eEeecCCCCCHHHHHHHHHHhhhcCce
Q 023866 126 RVMPNTPSAVGEAA---TVMSLGGTATEEDGELIGKLFGSVGKI 166 (276)
Q Consensus 126 ~~~p~~~~~~~~g~---~~i~~~~~~~~~~~~~v~~ll~~~G~~ 166 (276)
-.-||.+.++.+.. +.+.+.+ +.+.-..+..+|+.--..
T Consensus 169 L~GaNiA~EVa~~~f~e~tIg~~~--~~~~~~~l~~lf~~p~Fr 210 (372)
T KOG2711|consen 169 LMGANIASEVANEKFCETTIGYKD--KKEAGILLKKLFRTPYFR 210 (372)
T ss_pred ecCCchHHHHHhccccceeEeccc--hhhcchHHHHHhCCCceE
Confidence 33467776654321 2233321 233333577888765543
No 176
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.94 E-value=1.9e-05 Score=68.09 Aligned_cols=55 Identities=20% Similarity=0.240 Sum_probs=47.1
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeC-CCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc
Q 023866 8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVH-SNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ 82 (276)
Q Consensus 8 ~~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~-r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~ 82 (276)
.+.++|+||| .|.||.+|+..|.++|+ .|++| + |++ +..+++++||+||.|++..
T Consensus 156 ~~Gk~V~viGrs~~mG~PmA~~L~~~g~----tVtv~-~~rT~---------------~l~e~~~~ADIVIsavg~~ 212 (296)
T PRK14188 156 LSGLNAVVIGRSNLVGKPMAQLLLAANA----TVTIA-HSRTR---------------DLPAVCRRADILVAAVGRP 212 (296)
T ss_pred CCCCEEEEEcCCcchHHHHHHHHHhCCC----EEEEE-CCCCC---------------CHHHHHhcCCEEEEecCCh
Confidence 4568999999 99999999999999999 99999 6 553 3467788999999999644
No 177
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.93 E-value=4.2e-05 Score=65.70 Aligned_cols=69 Identities=14% Similarity=0.194 Sum_probs=52.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc----CceeccCchh-hhcCCCEEEEeeCcc
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI----GVKVLSDNNA-VVEYSDVVVFSVKPQ 82 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~----g~~~~~~~~~-~~~~aDvI~lav~~~ 82 (276)
+.+++.|+|+|.+|.+++..|.+.|+ +|+++ +|++++.+.+.+. +.....+..+ ...++|+||.|+|..
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~----~v~v~-~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~g 189 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADC----NVIIA-NRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAG 189 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCC
Confidence 35789999999999999999999998 99999 9999988777652 3211112222 235799999999753
No 178
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.91 E-value=7.7e-05 Score=66.13 Aligned_cols=80 Identities=18% Similarity=0.178 Sum_probs=57.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-c------------------CceeccCchhhhc
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I------------------GVKVLSDNNAVVE 70 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~------------------g~~~~~~~~~~~~ 70 (276)
++||||+|+|.||..+++.+.+... -+|...++++++....+.+ . ++.+..+..++..
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d---~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~ 77 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPD---MELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLE 77 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCC---cEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhc
Confidence 4799999999999999998875421 2666544877765554433 2 3444456667777
Q ss_pred CCCEEEEeeCcccHHHHHHHHh
Q 023866 71 YSDVVVFSVKPQVDKAAVITEE 92 (276)
Q Consensus 71 ~aDvI~lav~~~~~~~vl~~~~ 92 (276)
++|+||.|+++....+......
T Consensus 78 ~vDVVIdaT~~~~~~e~a~~~~ 99 (341)
T PRK04207 78 KADIVVDATPGGVGAKNKELYE 99 (341)
T ss_pred cCCEEEECCCchhhHHHHHHHH
Confidence 8999999999987777666553
No 179
>PRK10206 putative oxidoreductase; Provisional
Probab=97.90 E-value=7.3e-05 Score=66.47 Aligned_cols=78 Identities=15% Similarity=0.132 Sum_probs=53.1
Q ss_pred CCeEEEEcccHHHHH-HHHHHHhC--CCCCCCeEEEEeCCCHHHHHHHHHcC-ceeccCchhhhc--CCCEEEEeeCccc
Q 023866 10 SFILGFIGAGKMAES-IAKGVAKS--GVLPPDRICTAVHSNLKRRDAFESIG-VKVLSDNNAVVE--YSDVVVFSVKPQV 83 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~-la~~l~~~--g~~~~~~V~v~~~r~~~~~~~l~~~g-~~~~~~~~~~~~--~aDvI~lav~~~~ 83 (276)
+.||||||+|.++.. .+..+... ++ +|..++|+++++.+...+.+ +..+++.+++++ +.|+|++|+|+..
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~----~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~ 76 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSW----HVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADS 76 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCE----EEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchH
Confidence 469999999998753 34444332 34 67643399987654344454 567778888885 5799999999886
Q ss_pred HHHHHHHH
Q 023866 84 DKAAVITE 91 (276)
Q Consensus 84 ~~~vl~~~ 91 (276)
..++....
T Consensus 77 H~~~~~~a 84 (344)
T PRK10206 77 HFEYAKRA 84 (344)
T ss_pred HHHHHHHH
Confidence 65555444
No 180
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.90 E-value=5e-05 Score=65.47 Aligned_cols=71 Identities=14% Similarity=0.228 Sum_probs=54.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cC----ceeccCchhhhcCCCEEEEeeCcc
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG----VKVLSDNNAVVEYSDVVVFSVKPQ 82 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g----~~~~~~~~~~~~~aDvI~lav~~~ 82 (276)
...+++.|+|+|.+|.+++..|.+.|. .+|+++ +|+.++++.+.+ .+ +....+..+.+.++|+||-|+|..
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~---~~V~v~-~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g 196 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGV---AEITIV-NRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAG 196 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCC---CEEEEE-eCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCC
Confidence 345789999999999999999999883 289999 999999888765 22 222112335567899999999743
No 181
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.90 E-value=3.7e-05 Score=70.12 Aligned_cols=78 Identities=15% Similarity=0.103 Sum_probs=60.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCccc-H-H
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-D-K 85 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~-~-~ 85 (276)
...++++|||+|.+|..++..+...|. +|+++ ++++.+.......|+... +..++++.+|+|++++.... + .
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~Ga----~ViV~-e~dp~~a~~A~~~G~~~~-~leell~~ADIVI~atGt~~iI~~ 325 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGFGA----RVVVT-EIDPICALQAAMEGYQVV-TLEDVVETADIFVTATGNKDIITL 325 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCchhHHHHHhcCceec-cHHHHHhcCCEEEECCCcccccCH
Confidence 456899999999999999999999888 89999 999887655555677643 56788999999999975433 3 2
Q ss_pred HHHHHH
Q 023866 86 AAVITE 91 (276)
Q Consensus 86 ~vl~~~ 91 (276)
+.+..+
T Consensus 326 e~~~~M 331 (476)
T PTZ00075 326 EHMRRM 331 (476)
T ss_pred HHHhcc
Confidence 455444
No 182
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=97.89 E-value=2.5e-05 Score=68.34 Aligned_cols=64 Identities=16% Similarity=0.217 Sum_probs=50.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP 81 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~ 81 (276)
...++|||||+|++|+.+|+.+..-|. +|..| ||..... ..+.. ..+.++++++||+|++++|-
T Consensus 143 L~gktvGIiG~G~IG~~vA~~~~~fgm----~V~~~-d~~~~~~----~~~~~-~~~l~ell~~sDvv~lh~Pl 206 (311)
T PRK08410 143 IKGKKWGIIGLGTIGKRVAKIAQAFGA----KVVYY-STSGKNK----NEEYE-RVSLEELLKTSDIISIHAPL 206 (311)
T ss_pred cCCCEEEEECCCHHHHHHHHHHhhcCC----EEEEE-CCCcccc----ccCce-eecHHHHhhcCCEEEEeCCC
Confidence 457899999999999999999887777 89999 9864321 22443 34688999999999999984
No 183
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=97.88 E-value=2.7e-05 Score=67.86 Aligned_cols=74 Identities=19% Similarity=0.250 Sum_probs=56.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc-cHHHH
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VDKAA 87 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~-~~~~v 87 (276)
..++|||+|+|.+|+.+|++|...|- .|..+ +|++.+.+...+.+.. ..+..+.+.++|+|++++|-. ....+
T Consensus 161 ~gK~vgilG~G~IG~~ia~rL~~Fg~----~i~y~-~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~l 234 (336)
T KOG0069|consen 161 EGKTVGILGLGRIGKAIAKRLKPFGC----VILYH-SRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKETRHL 234 (336)
T ss_pred cCCEEEEecCcHHHHHHHHhhhhccc----eeeee-cccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHHHHHH
Confidence 35899999999999999999987553 55666 8887777666665554 346778899999999999854 34444
Q ss_pred H
Q 023866 88 V 88 (276)
Q Consensus 88 l 88 (276)
+
T Consensus 235 i 235 (336)
T KOG0069|consen 235 I 235 (336)
T ss_pred h
Confidence 4
No 184
>PRK06223 malate dehydrogenase; Reviewed
Probab=97.88 E-value=4.7e-05 Score=66.61 Aligned_cols=65 Identities=20% Similarity=0.182 Sum_probs=48.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH----H----c--Ccee--ccCchhhhcCCCEEEE
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S----I--GVKV--LSDNNAVVEYSDVVVF 77 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~----~----~--g~~~--~~~~~~~~~~aDvI~l 77 (276)
|+||+|||+|.||..++..+...|+ . +|.++ |+++++++... + . ..++ +.+. +.+++||+||+
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~--~-ev~L~-D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii 76 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKEL--G-DVVLF-DIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVI 76 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC--e-EEEEE-ECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEE
Confidence 4899999999999999999988875 2 78998 99887653321 1 1 1222 2344 55799999999
Q ss_pred ee
Q 023866 78 SV 79 (276)
Q Consensus 78 av 79 (276)
++
T Consensus 77 ~~ 78 (307)
T PRK06223 77 TA 78 (307)
T ss_pred CC
Confidence 97
No 185
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.86 E-value=6.6e-05 Score=68.04 Aligned_cols=68 Identities=15% Similarity=0.188 Sum_probs=57.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ 82 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~ 82 (276)
..++++|+|+|.+|..++..+...|. +|+++ ++++.+.......|..+. +..++++.+|+||.++...
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga----~ViV~-d~dp~ra~~A~~~G~~v~-~l~eal~~aDVVI~aTG~~ 278 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGA----RVIVT-EVDPICALQAAMDGFRVM-TMEEAAELGDIFVTATGNK 278 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-cCCchhhHHHHhcCCEec-CHHHHHhCCCEEEECCCCH
Confidence 56799999999999999999999998 99999 999988766666677653 5678888999999998543
No 186
>PLN02494 adenosylhomocysteinase
Probab=97.86 E-value=6.3e-05 Score=68.52 Aligned_cols=78 Identities=15% Similarity=0.100 Sum_probs=61.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCccc-H-H
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-D-K 85 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~-~-~ 85 (276)
...++++|+|+|.+|..++..+...|. +|+++ ++++.+.......|.... +..++++.+|+||.++.... + .
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga----~VIV~-e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTGt~~vI~~ 325 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA----RVIVT-EIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTGNKDIIMV 325 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCCCccchHH
Confidence 346899999999999999999988887 89999 999887666656676653 56778899999999876544 2 5
Q ss_pred HHHHHH
Q 023866 86 AAVITE 91 (276)
Q Consensus 86 ~vl~~~ 91 (276)
+.+..+
T Consensus 326 e~L~~M 331 (477)
T PLN02494 326 DHMRKM 331 (477)
T ss_pred HHHhcC
Confidence 555555
No 187
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.85 E-value=3.1e-05 Score=58.08 Aligned_cols=77 Identities=13% Similarity=0.162 Sum_probs=50.8
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCCCCCCeEE-EEeCCCHHHHHHHHH-----c---CceeccCchhhhcCCCEEEEeeCc
Q 023866 12 ILGFIG-AGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-----I---GVKVLSDNNAVVEYSDVVVFSVKP 81 (276)
Q Consensus 12 kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~-----~---g~~~~~~~~~~~~~aDvI~lav~~ 81 (276)
||+||| .|.+|+.+++.|.+. +.-++. ++ .++.+.-+.+.. . ...+.....+.+.++|+||+|+|.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h---p~~e~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~ 76 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH---PDFELVALV-SSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPH 76 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT---STEEEEEEE-ESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCH
T ss_pred CEEEECCCCHHHHHHHHHHhcC---CCccEEEee-eeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCch
Confidence 799999 899999999988873 333544 44 666533222322 1 122333334556899999999999
Q ss_pred ccHHHHHHHHh
Q 023866 82 QVDKAAVITEE 92 (276)
Q Consensus 82 ~~~~~vl~~~~ 92 (276)
....+....+.
T Consensus 77 ~~~~~~~~~~~ 87 (121)
T PF01118_consen 77 GASKELAPKLL 87 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 88888877663
No 188
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.85 E-value=7e-05 Score=67.67 Aligned_cols=68 Identities=15% Similarity=0.177 Sum_probs=58.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ 82 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~ 82 (276)
...+|+|+|+|.+|..++..+...|. +|+++ ++++.+++.+...|+... +..+++..+|+||.|+...
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga----~ViV~-d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~ 268 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGA----RVIVT-EVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNK 268 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-ECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCH
Confidence 46799999999999999999999898 89998 999999888888888654 3457788999999998544
No 189
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.83 E-value=0.00011 Score=63.20 Aligned_cols=78 Identities=13% Similarity=0.165 Sum_probs=55.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHH--HHHHHcCceec-cCchhhhc--CCCEEEEeeCcccHH
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR--DAFESIGVKVL-SDNNAVVE--YSDVVVFSVKPQVDK 85 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~--~~l~~~g~~~~-~~~~~~~~--~aDvI~lav~~~~~~ 85 (276)
+||||||+|+||..++..+.+... -++...+++++++. +..++.|+..+ .+.+++++ +.|+||+++|++...
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~---~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~ 78 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEH---LEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHA 78 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCC---cEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHH
Confidence 689999999999988887775422 16653338888753 34445787643 45666664 579999999988766
Q ss_pred HHHHHH
Q 023866 86 AAVITE 91 (276)
Q Consensus 86 ~vl~~~ 91 (276)
+.....
T Consensus 79 e~a~~a 84 (285)
T TIGR03215 79 RHARLL 84 (285)
T ss_pred HHHHHH
Confidence 666554
No 190
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=97.82 E-value=0.00018 Score=63.65 Aligned_cols=67 Identities=12% Similarity=0.217 Sum_probs=55.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCC--CCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeC
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSG--VLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVK 80 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g--~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~ 80 (276)
+..||||||+ .||...+..+.+.. + ++..++++++++++.+.+ .|+..+++.++++.+.|+++++++
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~~~~~----eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ip 71 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAAPERF----ELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVR 71 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhCCCCc----EEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeC
Confidence 4589999999 68999999887643 4 666444999999998877 788888899999988888888874
No 191
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.80 E-value=9.1e-05 Score=66.75 Aligned_cols=70 Identities=14% Similarity=0.140 Sum_probs=57.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCccc
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV 83 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~ 83 (276)
...++|+|+|+|.+|..++..+...|. +|+++ ++++.+.......|..+. +..++++.+|+||.++....
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga----~ViV~-d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG~~~ 262 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA----RVIVT-EVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATGNKD 262 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC----EEEEE-eCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCCCHH
Confidence 356799999999999999999998888 89999 999988766666787654 45677899999999986443
No 192
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.79 E-value=8.5e-05 Score=68.85 Aligned_cols=70 Identities=21% Similarity=0.319 Sum_probs=54.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCcee--ccCchhhhcCCCEEEEeeCccc
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV--LSDNNAVVEYSDVVVFSVKPQV 83 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~--~~~~~~~~~~aDvI~lav~~~~ 83 (276)
...++++|+|+|.+|.+++..|.+.|+ +|+++ +|++++.+.+.+ .+... ..+.. .+.++|+||.|+|...
T Consensus 330 ~~~k~vlIiGaGgiG~aia~~L~~~G~----~V~i~-~R~~~~~~~la~~~~~~~~~~~~~~-~l~~~DiVInatP~g~ 402 (477)
T PRK09310 330 LNNQHVAIVGAGGAAKAIATTLARAGA----ELLIF-NRTKAHAEALASRCQGKAFPLESLP-ELHRIDIIINCLPPSV 402 (477)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHhccceechhHhc-ccCCCCEEEEcCCCCC
Confidence 356799999999999999999999998 99999 999998887765 23221 11222 2468999999998653
No 193
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.79 E-value=8.7e-05 Score=65.07 Aligned_cols=67 Identities=16% Similarity=0.269 Sum_probs=50.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH----H-----cCceeccCchhhhcCCCEEEEee
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S-----IGVKVLSDNNAVVEYSDVVVFSV 79 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~----~-----~g~~~~~~~~~~~~~aDvI~lav 79 (276)
.+||+|||+|++|.+++..|...|.. .++.++ |+++++++... + ....+..+..+.+++||+||++-
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~--~el~L~-D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIita 81 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIA--DELVII-DINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITA 81 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC--CEEEEE-eCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEec
Confidence 46999999999999999999888863 478999 99887654322 2 12334444556689999999976
No 194
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.76 E-value=8.8e-05 Score=64.78 Aligned_cols=65 Identities=17% Similarity=0.141 Sum_probs=47.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH-H---HHH------c--CceeccCchhhhcCCCEEEEe
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD-A---FES------I--GVKVLSDNNAVVEYSDVVVFS 78 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~-~---l~~------~--g~~~~~~~~~~~~~aDvI~la 78 (276)
|||+|||+|.||..+|..+...|+. +|.++ |++++..+ . +.+ . .+..+.+.++ +++||+||++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~---~Vvlv-Di~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIit 76 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELA---DLVLL-DVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVIT 76 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCC---eEEEE-eCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEc
Confidence 6999999999999999999988862 68888 88765433 1 111 1 1233455555 7899999999
Q ss_pred eC
Q 023866 79 VK 80 (276)
Q Consensus 79 v~ 80 (276)
+.
T Consensus 77 ag 78 (305)
T TIGR01763 77 AG 78 (305)
T ss_pred CC
Confidence 84
No 195
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=97.75 E-value=0.00012 Score=64.47 Aligned_cols=66 Identities=18% Similarity=0.206 Sum_probs=48.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH-----HHHH---cC--cee--ccCchhhhcCCCEEE
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD-----AFES---IG--VKV--LSDNNAVVEYSDVVV 76 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~-----~l~~---~g--~~~--~~~~~~~~~~aDvI~ 76 (276)
+.+||+|||+|.||..++..+...|+ .+|.++ |+++++++ .... .+ ..+ +.+. +.+++||+||
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl---~~i~Lv-Di~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI 79 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNL---GDVVLF-DIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVI 79 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC---CeEEEE-eCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEE
Confidence 45799999999999999999888885 268888 99887532 1111 12 223 2444 5689999999
Q ss_pred Eee
Q 023866 77 FSV 79 (276)
Q Consensus 77 lav 79 (276)
++.
T Consensus 80 ~ta 82 (321)
T PTZ00082 80 VTA 82 (321)
T ss_pred ECC
Confidence 977
No 196
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.74 E-value=0.00014 Score=62.78 Aligned_cols=70 Identities=21% Similarity=0.220 Sum_probs=53.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cC----ceecc---CchhhhcCCCEEEEeeC
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG----VKVLS---DNNAVVEYSDVVVFSVK 80 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g----~~~~~---~~~~~~~~aDvI~lav~ 80 (276)
+.+++.|||+|.+|++++..|.+.|. .+|+++ +|++++++.+.+ .+ +.... +..+.+.++|+||-|+|
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~---~~i~I~-nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp 199 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGV---TDITVI-NRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVP 199 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCC---CeEEEE-eCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCC
Confidence 45789999999999999999999886 479999 999999988875 21 11111 12244578999999997
Q ss_pred cc
Q 023866 81 PQ 82 (276)
Q Consensus 81 ~~ 82 (276)
..
T Consensus 200 ~g 201 (282)
T TIGR01809 200 AD 201 (282)
T ss_pred CC
Confidence 53
No 197
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.73 E-value=0.00017 Score=56.73 Aligned_cols=84 Identities=13% Similarity=0.241 Sum_probs=60.3
Q ss_pred CCCCCCC--CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcC-ceecc-C-chhhhcCCCEE
Q 023866 1 MDAFPIP--AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG-VKVLS-D-NNAVVEYSDVV 75 (276)
Q Consensus 1 ~~~~~~~--~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g-~~~~~-~-~~~~~~~aDvI 75 (276)
|..+|.. .+.++|.|||.|.+|...++.|++.|+ +|+++ +. +..+++.+.+ +.... . .++-++++|+|
T Consensus 2 ~~~~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga----~V~VI-sp--~~~~~l~~l~~i~~~~~~~~~~dl~~a~lV 74 (157)
T PRK06719 2 YNMYPLMFNLHNKVVVIIGGGKIAYRKASGLKDTGA----FVTVV-SP--EICKEMKELPYITWKQKTFSNDDIKDAHLI 74 (157)
T ss_pred CcccceEEEcCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-cC--ccCHHHHhccCcEEEecccChhcCCCceEE
Confidence 5567765 467999999999999999999999999 99998 64 3444444432 22211 1 11236789999
Q ss_pred EEeeCcccHHHHHHHH
Q 023866 76 VFSVKPQVDKAAVITE 91 (276)
Q Consensus 76 ~lav~~~~~~~vl~~~ 91 (276)
|.++.++.+...+...
T Consensus 75 iaaT~d~e~N~~i~~~ 90 (157)
T PRK06719 75 YAATNQHAVNMMVKQA 90 (157)
T ss_pred EECCCCHHHHHHHHHH
Confidence 9999888877666555
No 198
>PLN02306 hydroxypyruvate reductase
Probab=97.73 E-value=0.00011 Score=66.13 Aligned_cols=69 Identities=19% Similarity=0.232 Sum_probs=50.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHH-hCCCCCCCeEEEEeCCCHHH-HHHH-HHcC------------ceeccCchhhhcCC
Q 023866 8 AESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKR-RDAF-ESIG------------VKVLSDNNAVVEYS 72 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~-~~g~~~~~~V~v~~~r~~~~-~~~l-~~~g------------~~~~~~~~~~~~~a 72 (276)
...++|||||+|++|+.+|+.+. .-|. +|..| ||.+.. .+.. ...+ .....+.++++++|
T Consensus 163 L~gktvGIiG~G~IG~~vA~~l~~~fGm----~V~~~-d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~s 237 (386)
T PLN02306 163 LKGQTVGVIGAGRIGSAYARMMVEGFKM----NLIYY-DLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREA 237 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCC----EEEEE-CCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhC
Confidence 45689999999999999999875 5576 89988 987532 1111 1122 12234788999999
Q ss_pred CEEEEeeCc
Q 023866 73 DVVVFSVKP 81 (276)
Q Consensus 73 DvI~lav~~ 81 (276)
|+|++++|-
T Consensus 238 DiV~lh~Pl 246 (386)
T PLN02306 238 DVISLHPVL 246 (386)
T ss_pred CEEEEeCCC
Confidence 999999873
No 199
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.73 E-value=7.5e-05 Score=65.64 Aligned_cols=66 Identities=17% Similarity=0.308 Sum_probs=48.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH--H--HH----cC--cee--ccCchhhhcCCCEEE
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA--F--ES----IG--VKV--LSDNNAVVEYSDVVV 76 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~--l--~~----~g--~~~--~~~~~~~~~~aDvI~ 76 (276)
+.+||+|||+|.||..++..+...|. .+|.++ |+++++++. + .. .+ ..+ +++. +.+++||+||
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~---~~l~L~-Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~-~~l~~ADiVV 78 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNL---GDVVLY-DVIKGVPQGKALDLKHFSTLVGSNINILGTNNY-EDIKDSDVVV 78 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCC---CeEEEE-ECCCccchhHHHHHhhhccccCCCeEEEeCCCH-HHhCCCCEEE
Confidence 46799999999999999998888874 278899 998765432 1 11 12 222 2344 4679999999
Q ss_pred Eee
Q 023866 77 FSV 79 (276)
Q Consensus 77 lav 79 (276)
++.
T Consensus 79 ita 81 (319)
T PTZ00117 79 ITA 81 (319)
T ss_pred ECC
Confidence 998
No 200
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.72 E-value=0.00014 Score=66.93 Aligned_cols=71 Identities=11% Similarity=0.272 Sum_probs=56.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceec-cC------chhh-hcCCCEEEEeeCc
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVL-SD------NNAV-VEYSDVVVFSVKP 81 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~-~~------~~~~-~~~aDvI~lav~~ 81 (276)
|+|.|+|+|.+|..++..|.+.|+ +|+++ ++++++.+.+++ .++.+. .+ ..++ +.++|.||++++.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~----~v~vi-d~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~ 75 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENN----DVTVI-DTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDS 75 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC----cEEEE-ECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCC
Confidence 689999999999999999999998 99999 999999988876 555432 11 1223 6789999999987
Q ss_pred ccHHH
Q 023866 82 QVDKA 86 (276)
Q Consensus 82 ~~~~~ 86 (276)
+....
T Consensus 76 ~~~n~ 80 (453)
T PRK09496 76 DETNM 80 (453)
T ss_pred hHHHH
Confidence 65543
No 201
>PRK06932 glycerate dehydrogenase; Provisional
Probab=97.71 E-value=5.3e-05 Score=66.42 Aligned_cols=63 Identities=14% Similarity=0.216 Sum_probs=48.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP 81 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~ 81 (276)
...++|||||+|++|+.+++.+..-|. +|..| +|.... . .... ..+.++++++||+|++++|-
T Consensus 145 l~gktvgIiG~G~IG~~va~~l~~fg~----~V~~~-~~~~~~--~---~~~~-~~~l~ell~~sDiv~l~~Pl 207 (314)
T PRK06932 145 VRGSTLGVFGKGCLGTEVGRLAQALGM----KVLYA-EHKGAS--V---CREG-YTPFEEVLKQADIVTLHCPL 207 (314)
T ss_pred cCCCEEEEECCCHHHHHHHHHHhcCCC----EEEEE-CCCccc--c---cccc-cCCHHHHHHhCCEEEEcCCC
Confidence 456899999999999999999887777 88888 876421 1 1111 34678999999999999983
No 202
>PRK06487 glycerate dehydrogenase; Provisional
Probab=97.70 E-value=8.3e-05 Score=65.28 Aligned_cols=62 Identities=15% Similarity=0.213 Sum_probs=49.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP 81 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~ 81 (276)
...++|||||+|++|+.+|+.+..-|. +|..| +|.... .... ..+.++++++||+|++++|-
T Consensus 146 l~gktvgIiG~G~IG~~vA~~l~~fgm----~V~~~-~~~~~~------~~~~-~~~l~ell~~sDiv~l~lPl 207 (317)
T PRK06487 146 LEGKTLGLLGHGELGGAVARLAEAFGM----RVLIG-QLPGRP------ARPD-RLPLDELLPQVDALTLHCPL 207 (317)
T ss_pred cCCCEEEEECCCHHHHHHHHHHhhCCC----EEEEE-CCCCCc------cccc-ccCHHHHHHhCCEEEECCCC
Confidence 456899999999999999999987787 89988 886321 1111 23678999999999999984
No 203
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=97.70 E-value=0.0086 Score=50.48 Aligned_cols=162 Identities=14% Similarity=0.186 Sum_probs=96.6
Q ss_pred CceeccCchhhhcCCCEEEEeeCccc-HHHHHHHHhhccccccCCcccCCCCcccHHHHHHHc---C--CCcEEEEecCc
Q 023866 58 GVKVLSDNNAVVEYSDVVVFSVKPQV-DKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWT---G--HSRFIRVMPNT 131 (276)
Q Consensus 58 g~~~~~~~~~~~~~aDvI~lav~~~~-~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l---~--~~~vv~~~p~~ 131 (276)
|+.+++|..|+++++|++|+-+|-.. -..+++++.. .+ +...++...-.+ +.-.+...| + +..+..+||..
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~-~i-pEgAII~~tCTI-pt~~ly~~le~l~R~DvgIsS~HPaa 204 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGMQPDIIEKFAD-DI-KEGAIVTHACTI-PTTKFAKIFKDLGRDDLNVTSYHPGA 204 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCCchHHHHHHHh-hC-CCCCEEeccccC-CHHHHHHHHHHhCcccCCeeccCCCC
Confidence 67778888999999999999997543 2444444410 00 002233333344 443333333 2 34566666642
Q ss_pred -cccccCcceEeecCCCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---H-HHcCCC
Q 023866 132 -PSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---G-VAAGLP 205 (276)
Q Consensus 132 -~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~-~~~Gl~ 205 (276)
|..- |...+. -.-.++|+.+++.++.+..|+. +.+..+....+.-+++ +..+....++.+. + +-.|-|
T Consensus 205 VPgt~--Gq~~i~-egyAtEEqI~klveL~~sa~k~ay~~PA~lvspV~DMgS---~VTAv~~aGiL~Y~~~~tqIlgAP 278 (342)
T PRK00961 205 VPEMK--GQVYIA-EGYADEEAVEKLYEIGKKARGNAFKMPANLIGPVCDMCS---AVTAIVYAGILAYRDAVTQILGAP 278 (342)
T ss_pred CCCCC--Cceecc-cccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHH---HHHHHHHHHHHHHHHHHHHHhcCc
Confidence 2221 332222 1235789999999999999976 7777665554444332 2222233333332 2 357889
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 023866 206 RELALGLASQTVLGAASMVTKSG 228 (276)
Q Consensus 206 ~~~a~~~~~~~~~g~~~~~~~~~ 228 (276)
.+.+.+.+..++...+.+++.+|
T Consensus 279 ~~mie~qa~eaL~tmasLme~~G 301 (342)
T PRK00961 279 ADFAQMMADEALTQITALMREEG 301 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 99898999999999899987655
No 204
>PRK04148 hypothetical protein; Provisional
Probab=97.68 E-value=0.00034 Score=53.06 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=62.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee-----ccCchhhhcCCCEEEEeeCccc
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-----LSDNNAVVEYSDVVVFSVKPQV 83 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-----~~~~~~~~~~aDvI~lav~~~~ 83 (276)
+.+||..||+| -|..++..|.+.|+ +|+++ |.+++..+.+++.++.+ ++.+.+.-+++|+|.-.=||..
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~----~ViaI-Di~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~e 89 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF----DVIVI-DINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRD 89 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHH
Confidence 34789999999 99889999999999 99999 99999999888866543 3345577789999998888877
Q ss_pred HHHHHHHH
Q 023866 84 DKAAVITE 91 (276)
Q Consensus 84 ~~~vl~~~ 91 (276)
+..-+.++
T Consensus 90 l~~~~~~l 97 (134)
T PRK04148 90 LQPFILEL 97 (134)
T ss_pred HHHHHHHH
Confidence 65544444
No 205
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.67 E-value=0.00014 Score=54.48 Aligned_cols=76 Identities=14% Similarity=0.176 Sum_probs=48.5
Q ss_pred eEEEEcc-cHHHHHHHHHHHhC-CCCCCCeEEEEeCCCHHHHHHHHHcC--ce-e---ccCchhh-hcCCCEEEEeeCcc
Q 023866 12 ILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIG--VK-V---LSDNNAV-VEYSDVVVFSVKPQ 82 (276)
Q Consensus 12 kIgiIG~-G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~~g--~~-~---~~~~~~~-~~~aDvI~lav~~~ 82 (276)
||+|||+ |.+|..++..|.+. ++ ++...+++++++.+.+...+ +. . ..+..+. ..++|+||+|+|+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~----~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~ 76 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDF----EVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHG 76 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCc----eEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcH
Confidence 6999995 99999999998884 55 66644366554444443321 21 0 1111111 24899999999999
Q ss_pred cHHHHHHHH
Q 023866 83 VDKAAVITE 91 (276)
Q Consensus 83 ~~~~vl~~~ 91 (276)
...+++..+
T Consensus 77 ~~~~~~~~~ 85 (122)
T smart00859 77 VSKEIAPLL 85 (122)
T ss_pred HHHHHHHHH
Confidence 877766543
No 206
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.67 E-value=0.00037 Score=57.14 Aligned_cols=79 Identities=15% Similarity=0.140 Sum_probs=57.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-HHHHHHHHcC-ceeccC--chhhhcCCCEEEEeeCccc
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIG-VKVLSD--NNAVVEYSDVVVFSVKPQV 83 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~g-~~~~~~--~~~~~~~aDvI~lav~~~~ 83 (276)
.+.++|.|||.|.+|...++.|++.|. +|+++ +++. +.+..+...+ +..... ..+.+.++|+||.|+....
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga----~V~VI-s~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~e 82 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGA----HIVVI-SPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPR 82 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC----eEEEE-cCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHH
Confidence 357899999999999999999999998 99999 8764 2334444433 332111 1234678999999998887
Q ss_pred HHHHHHHH
Q 023866 84 DKAAVITE 91 (276)
Q Consensus 84 ~~~vl~~~ 91 (276)
+...+.+.
T Consensus 83 lN~~i~~~ 90 (202)
T PRK06718 83 VNEQVKED 90 (202)
T ss_pred HHHHHHHH
Confidence 76665544
No 207
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.67 E-value=0.00014 Score=59.26 Aligned_cols=70 Identities=23% Similarity=0.315 Sum_probs=53.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-c----Cce--ec--cC---chhhhcCCCEE
Q 023866 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I----GVK--VL--SD---NNAVVEYSDVV 75 (276)
Q Consensus 9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~----g~~--~~--~~---~~~~~~~aDvI 75 (276)
+.+++.|+|. |.+|..++..|.+.|+ +|+++ +|++++++.+.+ . +.. .. .+ ..+.+.++|+|
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~----~V~l~-~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diV 101 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGA----RVVLV-GRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVV 101 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEE
Confidence 4579999996 9999999999999988 99999 999998877654 1 222 11 11 13567889999
Q ss_pred EEeeCccc
Q 023866 76 VFSVKPQV 83 (276)
Q Consensus 76 ~lav~~~~ 83 (276)
|.+++...
T Consensus 102 i~at~~g~ 109 (194)
T cd01078 102 FAAGAAGV 109 (194)
T ss_pred EECCCCCc
Confidence 99987554
No 208
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.66 E-value=0.00016 Score=63.22 Aligned_cols=66 Identities=15% Similarity=0.250 Sum_probs=48.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH----HHH-c---C---ceeccCchhhhcCCCEEEEe
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES-I---G---VKVLSDNNAVVEYSDVVVFS 78 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~-~---g---~~~~~~~~~~~~~aDvI~la 78 (276)
.+||+|||+|++|.+++..|...+. ..++.++ |+++++++- +.. . . +..+.+.+ .+++||+||++
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~--~~el~Li-D~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivvit 78 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGL--ADELVLV-DVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVIVT 78 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC--CCEEEEE-eCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEEEC
Confidence 4699999999999999999988876 4578999 998766532 222 1 1 22234544 48999999997
Q ss_pred e
Q 023866 79 V 79 (276)
Q Consensus 79 v 79 (276)
.
T Consensus 79 a 79 (312)
T cd05293 79 A 79 (312)
T ss_pred C
Confidence 6
No 209
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=97.66 E-value=6.1e-05 Score=62.34 Aligned_cols=78 Identities=15% Similarity=0.287 Sum_probs=53.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHH--hCCCCCCCeEEEEeCCCHHHHHHHHHcCcee--ccCchhhhc--CCCEEEEeeCcc
Q 023866 9 ESFILGFIGAGKMAESIAKGVA--KSGVLPPDRICTAVHSNLKRRDAFESIGVKV--LSDNNAVVE--YSDVVVFSVKPQ 82 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~--~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~--~~~~~~~~~--~aDvI~lav~~~ 82 (276)
...+|+|||+|.+|..++..+. ..|+ ++..++|+++++..... .|..+ ..+..+.++ +.|++++|+|+.
T Consensus 83 ~~~rV~IIGaG~iG~~l~~~~~~~~~g~----~ivgv~D~d~~~~~~~i-~g~~v~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLNYNGFEKRGF----KIVAAFDVDPEKIGTKI-GGIPVYHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred CCcEEEEECCCHHHHHHHHhhhcccCCc----EEEEEEECChhhcCCEe-CCeEEcCHHHHHHHHHHCCCCEEEEeCCch
Confidence 4578999999999999988632 4465 77654488876653211 23322 234455554 499999999998
Q ss_pred cHHHHHHHH
Q 023866 83 VDKAAVITE 91 (276)
Q Consensus 83 ~~~~vl~~~ 91 (276)
...++...+
T Consensus 158 ~~~~i~~~l 166 (213)
T PRK05472 158 AAQEVADRL 166 (213)
T ss_pred hHHHHHHHH
Confidence 877776655
No 210
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=97.65 E-value=0.0048 Score=52.05 Aligned_cols=163 Identities=13% Similarity=0.172 Sum_probs=97.0
Q ss_pred CceeccCchhhhcCCCEEEEeeCccc-HHHHHHHHhhccccccCCcccCCCCcccHHHHHHH---cC--CCcEEEEecCc
Q 023866 58 GVKVLSDNNAVVEYSDVVVFSVKPQV-DKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEW---TG--HSRFIRVMPNT 131 (276)
Q Consensus 58 g~~~~~~~~~~~~~aDvI~lav~~~~-~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~---l~--~~~vv~~~p~~ 131 (276)
|+.+++|..|+++++|++|+-+|-.. -..+++++.. .+ +...++...-.+ +.-.+.+. ++ +..+..+||..
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~-~l-pEgAII~~tCTI-pt~~ly~ilE~l~R~DvgVsS~HPaa 202 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNKQPDIIKKFID-DI-PEGAIVTHACTI-PTTKFAKIFEDLGREDLNVTSYHPGC 202 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHh-hC-CCCCEEeccccC-ChHHHHHHHHhhCcccCCeeccCCCC
Confidence 67778888999999999999997543 2444444410 00 002233333344 44333332 22 35566677653
Q ss_pred cccccCcceEeecCCCCCHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHH---H-HHcCCCH
Q 023866 132 PSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---G-VAAGLPR 206 (276)
Q Consensus 132 ~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~---~-~~~Gl~~ 206 (276)
-.....+..++ -.-.++|+.+++.++.+..|+. +.+..+....+.-+++ +..+....++.+. + +-.|-|.
T Consensus 203 VPgt~~q~Yi~--egyAtEEqI~klveL~~sa~k~ay~~PA~LvspV~DMgS---~VTAv~~aGiL~Y~~~~t~IlgAP~ 277 (340)
T TIGR01723 203 VPEMKGQVYIA--EGYASEEAVNKLYELGKKARGKAFKMPANLLGPVCDMCS---AVTAIVYAGLLAYRDAVTKILGAPA 277 (340)
T ss_pred CCCCCCceEee--cccCCHHHHHHHHHHHHHhCCCeeecchhhccchhhHHH---HHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 22112223322 2235899999999999999976 7777665554444332 2222233333332 2 3578899
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 023866 207 ELALGLASQTVLGAASMVTKSG 228 (276)
Q Consensus 207 ~~a~~~~~~~~~g~~~~~~~~~ 228 (276)
+.+.+.+..++...+.+++.+|
T Consensus 278 ~miq~qa~eaL~tmasLme~~G 299 (340)
T TIGR01723 278 DFAQMMADEALTQIHNLMEEKG 299 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 9888899999998898887655
No 211
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.61 E-value=0.00015 Score=53.98 Aligned_cols=75 Identities=19% Similarity=0.301 Sum_probs=57.0
Q ss_pred CeEEEEc----ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHH
Q 023866 11 FILGFIG----AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKA 86 (276)
Q Consensus 11 ~kIgiIG----~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~ 86 (276)
++|+||| -+..|..+.+.|.+.|+ +|+.. +.+.+.. .|...+.+..|.-...|++++++|++.+.+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~----~v~~V-np~~~~i-----~G~~~y~sl~e~p~~iDlavv~~~~~~~~~ 70 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGY----EVYPV-NPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCVPPDKVPE 70 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-----EEEEE-STTCSEE-----TTEE-BSSGGGCSST-SEEEE-S-HHHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCC----EEEEE-CCCceEE-----CcEEeeccccCCCCCCCEEEEEcCHHHHHH
Confidence 4799999 69999999999999998 99988 6654221 588888888874478999999999999999
Q ss_pred HHHHHhhcc
Q 023866 87 AVITEEAFG 95 (276)
Q Consensus 87 vl~~~~~~~ 95 (276)
+++++.+.|
T Consensus 71 ~v~~~~~~g 79 (116)
T PF13380_consen 71 IVDEAAALG 79 (116)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHcC
Confidence 999885433
No 212
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.60 E-value=0.00011 Score=63.04 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=48.1
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeC-cccHH
Q 023866 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVDK 85 (276)
Q Consensus 8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~-~~~~~ 85 (276)
.+.++|+|||. |.||.+|+..|.++|+ .|++| .... .+..+.+++||+||.|+. |..+.
T Consensus 156 l~Gk~v~vIG~S~ivG~Pla~lL~~~ga----tVtv~-~s~t--------------~~l~~~~~~ADIVI~avg~~~~v~ 216 (284)
T PRK14179 156 LEGKHAVVIGRSNIVGKPMAQLLLDKNA----TVTLT-HSRT--------------RNLAEVARKADILVVAIGRGHFVT 216 (284)
T ss_pred CCCCEEEEECCCCcCcHHHHHHHHHCCC----EEEEE-CCCC--------------CCHHHHHhhCCEEEEecCccccCC
Confidence 34689999999 9999999999999998 99999 5321 146677899999999995 44444
Q ss_pred H
Q 023866 86 A 86 (276)
Q Consensus 86 ~ 86 (276)
+
T Consensus 217 ~ 217 (284)
T PRK14179 217 K 217 (284)
T ss_pred H
Confidence 3
No 213
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.59 E-value=0.00016 Score=57.41 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=46.3
Q ss_pred CCCCeEEEEcccHH-HHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc
Q 023866 8 AESFILGFIGAGKM-AESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ 82 (276)
Q Consensus 8 ~~~~kIgiIG~G~m-G~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~ 82 (276)
...++|.|||+|.| |..+++.|.+.|. +|+++ +|+.+ +..+.+.++|+||.|++..
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~----~V~v~-~r~~~--------------~l~~~l~~aDiVIsat~~~ 98 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNA----TVTVC-HSKTK--------------NLKEHTKQADIVIVAVGKP 98 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCC----EEEEE-ECCch--------------hHHHHHhhCCEEEEcCCCC
Confidence 46789999999998 8889999999887 89999 88742 3345688999999999754
No 214
>PRK15076 alpha-galactosidase; Provisional
Probab=97.59 E-value=0.00027 Score=64.58 Aligned_cols=71 Identities=18% Similarity=0.246 Sum_probs=49.0
Q ss_pred CCeEEEEcccHHHHHHHH--HHHhCCCCCCCeEEEEeCCCHHHHHHHHH--------cC----ceeccCchhhhcCCCEE
Q 023866 10 SFILGFIGAGKMAESIAK--GVAKSGVLPPDRICTAVHSNLKRRDAFES--------IG----VKVLSDNNAVVEYSDVV 75 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~--~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~aDvI 75 (276)
++||+|||+|.||.+.+. .+....-+...+|.++ |+++++++.... .+ +..++|..+++++||+|
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLv-Did~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfV 79 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALM-DIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYV 79 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEE-CCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEE
Confidence 379999999999966655 5542111233489999 999988763221 22 23355657889999999
Q ss_pred EEeeCc
Q 023866 76 VFSVKP 81 (276)
Q Consensus 76 ~lav~~ 81 (276)
|.++..
T Consensus 80 v~ti~v 85 (431)
T PRK15076 80 INAIQV 85 (431)
T ss_pred eEeeee
Confidence 999854
No 215
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.59 E-value=0.00024 Score=62.05 Aligned_cols=65 Identities=18% Similarity=0.283 Sum_probs=48.6
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH----HHHH----c---CceeccCchhhhcCCCEEEEee
Q 023866 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD----AFES----I---GVKVLSDNNAVVEYSDVVVFSV 79 (276)
Q Consensus 12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~----~l~~----~---g~~~~~~~~~~~~~aDvI~lav 79 (276)
||+|||+|++|+++|..|+..+.. .++.++ |+++++++ .|.. . .+.+.....+.+++||+||++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~--~elvL~-Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvita 76 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLF--SEIVLI-DVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITA 76 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCC--CEEEEE-eCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECC
Confidence 799999999999999999888763 489999 99876543 2222 1 2334334457789999999986
No 216
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.56 E-value=0.0002 Score=65.43 Aligned_cols=69 Identities=23% Similarity=0.211 Sum_probs=47.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP 81 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~ 81 (276)
|...+|.|||.|.+|.++|..|.+.|+ +|+++ |++++..+......-...........++|++|.+.+.
T Consensus 1 ~~~~~i~iiGlG~~G~slA~~l~~~G~----~V~g~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi 69 (418)
T PRK00683 1 MGLQRVVVLGLGVTGKSIARFLAQKGV----YVIGV-DKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGI 69 (418)
T ss_pred CCCCeEEEEEECHHHHHHHHHHHHCCC----EEEEE-eCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCC
Confidence 345789999999999999999999998 89999 9876543321111001112333344779999998743
No 217
>PLN02602 lactate dehydrogenase
Probab=97.56 E-value=0.00033 Score=62.17 Aligned_cols=66 Identities=18% Similarity=0.350 Sum_probs=48.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH----HHH----cC-ceecc-CchhhhcCCCEEEEee
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES----IG-VKVLS-DNNAVVEYSDVVVFSV 79 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~----~g-~~~~~-~~~~~~~~aDvI~lav 79 (276)
+||+|||+|++|++++..|...+. ..++.++ |+++++++- +.. .+ ..+.. ...+.+++||+||++-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l--~~el~Li-Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~~~daDiVVitA 113 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDL--ADELALV-DVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAVTAGSDLCIVTA 113 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC--CCEEEEE-eCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHHhCCCCEEEECC
Confidence 699999999999999999988776 3479999 998876532 222 11 34432 2334489999999985
No 218
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=97.55 E-value=8.8e-05 Score=53.23 Aligned_cols=81 Identities=14% Similarity=0.245 Sum_probs=57.7
Q ss_pred CCCeEEEEcccHHHHHHHHHH-HhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhcC--CCEEEEeeCcccH
Q 023866 9 ESFILGFIGAGKMAESIAKGV-AKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEY--SDVVVFSVKPQVD 84 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l-~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~--aDvI~lav~~~~~ 84 (276)
+..++.++|+|++|.+++..+ ...|+ .+...+|.++++.- .+ .|+.+..+..++.+. .|+-+++||+...
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~----~i~~~~dv~~~~~G--~~i~gipV~~~~~~l~~~~~i~iaii~VP~~~a 75 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGF----GIVAVFDVDPEKIG--KEIGGIPVYGSMDELEEFIEIDIAIITVPAEAA 75 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCE----CEEEEEEECTTTTT--SEETTEEEESSHHHHHHHCTTSEEEEES-HHHH
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCC----CCEEEEEcCCCccC--cEECCEEeeccHHHhhhhhCCCEEEEEcCHHHH
Confidence 456899999999999987544 34566 55433388887543 12 477777677776655 9999999999999
Q ss_pred HHHHHHHhhcc
Q 023866 85 KAAVITEEAFG 95 (276)
Q Consensus 85 ~~vl~~~~~~~ 95 (276)
.++..++.+.|
T Consensus 76 ~~~~~~~~~~g 86 (96)
T PF02629_consen 76 QEVADELVEAG 86 (96)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
Confidence 88888774333
No 219
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.54 E-value=0.00092 Score=58.09 Aligned_cols=90 Identities=19% Similarity=0.310 Sum_probs=64.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHh---CCCCCCCeEEEEeCCCHHHHHHHHH-cCc---eeccCchhhhcC--CCEEEEee
Q 023866 9 ESFILGFIGAGKMAESIAKGVAK---SGVLPPDRICTAVHSNLKRRDAFES-IGV---KVLSDNNAVVEY--SDVVVFSV 79 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~---~g~~~~~~V~v~~~r~~~~~~~l~~-~g~---~~~~~~~~~~~~--aDvI~lav 79 (276)
...|+||+|+|.|++-.++.|.. ++| .|..+++|+.+++..+++ .++ ++..+.++++++ +|+|.+++
T Consensus 5 ~~ir~Gi~g~g~ia~~f~~al~~~p~s~~----~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~ 80 (351)
T KOG2741|consen 5 ATIRWGIVGAGRIARDFVRALHTLPESNH----QIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYIST 80 (351)
T ss_pred ceeEEEEeehhHHHHHHHHHhccCcccCc----EEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCC
Confidence 34689999999999999988753 244 666555999999998887 555 567888888876 49999999
Q ss_pred CcccHHHHHHHHhhccccccCCcccCC
Q 023866 80 KPQVDKAAVITEEAFGFCCCRSEIERP 106 (276)
Q Consensus 80 ~~~~~~~vl~~~~~~~~~~~~~~l~~~ 106 (276)
|..+..+++..+.+.+ +++|-.+
T Consensus 81 ~~~qH~evv~l~l~~~----K~VL~EK 103 (351)
T KOG2741|consen 81 PNPQHYEVVMLALNKG----KHVLCEK 103 (351)
T ss_pred CCccHHHHHHHHHHcC----CcEEecc
Confidence 8555555554442222 5566443
No 220
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.53 E-value=0.00014 Score=57.49 Aligned_cols=66 Identities=20% Similarity=0.261 Sum_probs=50.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc---Cceecc--CchhhhcCCCEEEEeeCc
Q 023866 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI---GVKVLS--DNNAVVEYSDVVVFSVKP 81 (276)
Q Consensus 11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~---g~~~~~--~~~~~~~~aDvI~lav~~ 81 (276)
|||+|||+ |..|+.|++-..+.|| +|+.+ -||+++....... ...+.+ +..+.+..-|+||.+...
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH----eVTAi-vRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~ 72 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH----EVTAI-VRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGA 72 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC----eeEEE-EeChHhccccccceeecccccChhhhHhhhcCCceEEEeccC
Confidence 79999998 9999999999999999 99999 8999987554221 111222 223667889999999843
No 221
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.53 E-value=0.00074 Score=49.94 Aligned_cols=66 Identities=23% Similarity=0.421 Sum_probs=51.4
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-cCch--h-----hhcCCCEEEEeeCccc
Q 023866 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDNN--A-----VVEYSDVVVFSVKPQV 83 (276)
Q Consensus 13 IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~~~--~-----~~~~aDvI~lav~~~~ 83 (276)
|-|+|+|.+|..+++.|.+.+. +|++. ++++++.+.+.+.|..+. .|.. + -++++|.||++++.+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~----~vvvi-d~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~ 74 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGI----DVVVI-DRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDE 74 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS----EEEEE-ESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCC----EEEEE-ECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHH
Confidence 5689999999999999999776 89999 999999999998876532 2221 1 2568999999997654
No 222
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.53 E-value=0.00029 Score=63.26 Aligned_cols=65 Identities=18% Similarity=0.269 Sum_probs=52.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceec------cCchhhhcCCCEEEEee
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVL------SDNNAVVEYSDVVVFSV 79 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~------~~~~~~~~~aDvI~lav 79 (276)
..+|.|||+|.+|...++.+...|. +|+++ ||++++++.+.. .+..+. .+..+.+.++|+||.++
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa----~V~v~-d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~ 238 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGA----TVTIL-DINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAV 238 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCC----eEEEE-ECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEcc
Confidence 4679999999999999999999997 89999 999999888765 443221 12345678999999997
No 223
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.52 E-value=0.00062 Score=68.07 Aligned_cols=81 Identities=20% Similarity=0.221 Sum_probs=58.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCC----------CCeEEEEeCCCHHHHHHHHH-c-Cc---ee-ccCchhh---hc
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLP----------PDRICTAVHSNLKRRDAFES-I-GV---KV-LSDNNAV---VE 70 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~----------~~~V~v~~~r~~~~~~~l~~-~-g~---~~-~~~~~~~---~~ 70 (276)
++||+|||+|.||+..+..|.+...+. ...|++. |+++++++.+.+ . ++ .+ ..+.+++ ++
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~Va-D~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVA-SLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEE-CCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 679999999999999999998653211 0137788 999999888776 3 52 33 3444444 36
Q ss_pred CCCEEEEeeCcccHHHHHHHH
Q 023866 71 YSDVVVFSVKPQVDKAAVITE 91 (276)
Q Consensus 71 ~aDvI~lav~~~~~~~vl~~~ 91 (276)
++|+|+.|+|+....++....
T Consensus 648 ~~DaVIsalP~~~H~~VAkaA 668 (1042)
T PLN02819 648 QVDVVISLLPASCHAVVAKAC 668 (1042)
T ss_pred CCCEEEECCCchhhHHHHHHH
Confidence 799999999998766666554
No 224
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.51 E-value=0.00061 Score=54.51 Aligned_cols=33 Identities=30% Similarity=0.462 Sum_probs=28.6
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (276)
Q Consensus 12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (276)
||.|||+|.||+.++..|.+.|. .+++++ |.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv---g~i~lv-D~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV---GNLKLV-DFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC---CeEEEE-eCCE
Confidence 68999999999999999999997 358888 7664
No 225
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.49 E-value=0.00022 Score=60.97 Aligned_cols=66 Identities=21% Similarity=0.324 Sum_probs=48.7
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-------c--C--ceeccCchhhhcCCCEEEEee
Q 023866 13 LGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------I--G--VKVLSDNNAVVEYSDVVVFSV 79 (276)
Q Consensus 13 IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------~--g--~~~~~~~~~~~~~aDvI~lav 79 (276)
|+|||+ |.||..++..|...|.....+|.++ |+++++++.... . . +..++|..+.+++||+||++.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~-D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~ 78 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLY-DIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITA 78 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEE-eCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECC
Confidence 689999 9999999999998882223489999 998876543221 1 2 233445568889999999976
No 226
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=97.44 E-value=0.00066 Score=58.35 Aligned_cols=72 Identities=18% Similarity=0.291 Sum_probs=53.2
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-c---Cc--eec-cCchhhhcCCCEEEEe
Q 023866 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I---GV--KVL-SDNNAVVEYSDVVVFS 78 (276)
Q Consensus 6 ~~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~---g~--~~~-~~~~~~~~~aDvI~la 78 (276)
......++.|+|+|.++.+++..|.+.|. .+|+|+ +|+.+++++|.+ . +. ... ....+...++|+||=+
T Consensus 122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~---~~i~V~-NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINa 197 (283)
T COG0169 122 VDVTGKRVLILGAGGAARAVAFALAEAGA---KRITVV-NRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINA 197 (283)
T ss_pred cccCCCEEEEECCcHHHHHHHHHHHHcCC---CEEEEE-eCCHHHHHHHHHHhhhcccccccccccccccccccCEEEEC
Confidence 33345789999999999999999999995 389999 999999998876 2 21 111 1111222268999999
Q ss_pred eCc
Q 023866 79 VKP 81 (276)
Q Consensus 79 v~~ 81 (276)
||.
T Consensus 198 Tp~ 200 (283)
T COG0169 198 TPV 200 (283)
T ss_pred CCC
Confidence 874
No 227
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.42 E-value=0.00094 Score=54.77 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=30.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (276)
...||.|||+|.+|+.++..|...|. .+++++ |++
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv---~~i~lv-D~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGV---GTIVIV-DDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCC---CeEEEe-cCC
Confidence 35789999999999999999999996 478888 776
No 228
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.41 E-value=0.00095 Score=54.63 Aligned_cols=35 Identities=17% Similarity=0.411 Sum_probs=30.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (276)
...||+|||+|.||+.++..|.+.|+ .+++++ |++
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gv---g~i~lv-D~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGI---GKLILV-DFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCC---CEEEEE-CCC
Confidence 45789999999999999999999997 368888 877
No 229
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.41 E-value=0.00031 Score=56.28 Aligned_cols=62 Identities=21% Similarity=0.369 Sum_probs=49.7
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec----c---CchhhhcCCCEEEEeeCc
Q 023866 13 LGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL----S---DNNAVVEYSDVVVFSVKP 81 (276)
Q Consensus 13 IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~----~---~~~~~~~~aDvI~lav~~ 81 (276)
|.|+|+ |.+|..+++.|++.|+ +|++. .|++++.+. ..++++. . +..++++++|.||.++.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~----~V~~~-~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH----EVTAL-VRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS----EEEEE-ESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCC----EEEEE-ecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 678996 9999999999999998 99999 899998877 4455432 1 234567799999999963
No 230
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=97.40 E-value=0.00045 Score=62.30 Aligned_cols=76 Identities=21% Similarity=0.246 Sum_probs=55.5
Q ss_pred CeEEEEcccHHHHHH-HHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce---ecc-----------------Cchh--
Q 023866 11 FILGFIGAGKMAESI-AKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK---VLS-----------------DNNA-- 67 (276)
Q Consensus 11 ~kIgiIG~G~mG~~l-a~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~---~~~-----------------~~~~-- 67 (276)
|||.++|+|+||++. ...|.++|+ +|++. +++++..+.+.+.|.- +.. +..+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~----~V~~v-d~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~ 75 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGF----EVTFV-DVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVI 75 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHH
Confidence 689999999999865 666677887 99999 9998999998876531 100 1111
Q ss_pred -hhcCCCEEEEeeCcccHHHHHHHH
Q 023866 68 -VVEYSDVVVFSVKPQVDKAAVITE 91 (276)
Q Consensus 68 -~~~~aDvI~lav~~~~~~~vl~~~ 91 (276)
.+.++|+|+++|++...+++...+
T Consensus 76 ~~~~~~dlvt~~v~~~~~~s~~~~l 100 (381)
T PRK02318 76 EAIAEADLVTTAVGPNILPFIAPLI 100 (381)
T ss_pred HHhcCCCEEEeCCCcccchhHHHHH
Confidence 234789999999988766665554
No 231
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.39 E-value=0.00053 Score=61.94 Aligned_cols=76 Identities=20% Similarity=0.314 Sum_probs=53.5
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc----Ccee----ccC---chhhhcCCCEEEEeeCc
Q 023866 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI----GVKV----LSD---NNAVVEYSDVVVFSVKP 81 (276)
Q Consensus 13 IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~----g~~~----~~~---~~~~~~~aDvI~lav~~ 81 (276)
|.|+|+|.+|+.+++.|.+.+. ..+|++. +|+.++++.+.+. .+.. ..+ ..++++++|+||-|++|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~--~~~v~va-~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGP--FEEVTVA-DRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGP 77 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTC--E-EEEEE-ESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred CEEEcCcHHHHHHHHHHhcCCC--CCcEEEE-ECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence 7899999999999999988753 1278899 9999999888651 2221 112 34568899999999998
Q ss_pred ccHHHHHHHH
Q 023866 82 QVDKAAVITE 91 (276)
Q Consensus 82 ~~~~~vl~~~ 91 (276)
..-..+++..
T Consensus 78 ~~~~~v~~~~ 87 (386)
T PF03435_consen 78 FFGEPVARAC 87 (386)
T ss_dssp GGHHHHHHHH
T ss_pred chhHHHHHHH
Confidence 8656665544
No 232
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.38 E-value=0.00071 Score=47.40 Aligned_cols=46 Identities=24% Similarity=0.375 Sum_probs=38.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCccc
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV 83 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~ 83 (276)
...++++|+|+|.+|..++..|.+.+. .+|++| +| |++|.+++...
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~---~~v~v~-~r--------------------------di~i~~~~~~~ 66 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGG---KKVVLC-DR--------------------------DILVTATPAGV 66 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cC--------------------------CEEEEcCCCCC
Confidence 356799999999999999999998842 389999 88 99999996543
No 233
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.34 E-value=0.00051 Score=62.82 Aligned_cols=71 Identities=20% Similarity=0.357 Sum_probs=48.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC--------CCCCCCeEE-EEeCCCHHHHHHHHHcCceeccCchhhhc--CCCEEE
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKS--------GVLPPDRIC-TAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVV 76 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~--------g~~~~~~V~-v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDvI~ 76 (276)
|++.|||+||+|.+|+.+++.|.+. |. .-+|. ++ +|++++.+.+...+...+++..+++. +.|+|+
T Consensus 1 m~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~--~i~l~~V~-~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVv 77 (426)
T PRK06349 1 MKPLKVGLLGLGTVGSGVVRILEENAEEIAARAGR--PIEIKKVA-VRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVV 77 (426)
T ss_pred CCeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCC--CEEEEEEE-eCChhhccCCCCcccceeCCHHHHhhCCCCCEEE
Confidence 3468999999999999999877543 21 11443 55 88877654332234456677778775 479999
Q ss_pred EeeCc
Q 023866 77 FSVKP 81 (276)
Q Consensus 77 lav~~ 81 (276)
.++++
T Consensus 78 e~tg~ 82 (426)
T PRK06349 78 ELMGG 82 (426)
T ss_pred ECCCC
Confidence 99865
No 234
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=97.33 E-value=0.00077 Score=63.92 Aligned_cols=69 Identities=10% Similarity=0.309 Sum_probs=55.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee-ccCc--hhh-----hcCCCEEEEeeCc
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LSDN--NAV-----VEYSDVVVFSVKP 81 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-~~~~--~~~-----~~~aDvI~lav~~ 81 (276)
+-+|-|+|+|++|+.+++.|.+.|+ +++++ |+|+++.+++++.|..+ ..|. .++ ++++|.+++++++
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~----~vvvI-d~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~ 491 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGI----PLVVI-ETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPN 491 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCC----CEEEE-ECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCC
Confidence 3679999999999999999999999 99999 99999999998877653 2221 221 4689999999876
Q ss_pred cc
Q 023866 82 QV 83 (276)
Q Consensus 82 ~~ 83 (276)
+.
T Consensus 492 ~~ 493 (558)
T PRK10669 492 GY 493 (558)
T ss_pred hH
Confidence 53
No 235
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=97.32 E-value=0.0009 Score=59.25 Aligned_cols=78 Identities=12% Similarity=0.227 Sum_probs=54.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH---------------------HHHH----HHHH--cCcee-
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---------------------KRRD----AFES--IGVKV- 61 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~---------------------~~~~----~l~~--~g~~~- 61 (276)
..+|.|||+|.+|+.++..|.++|+ .+++++ |++. .|++ .+++ .++.+
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGv---g~i~lv-D~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~ 99 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGI---GKLTIA-DRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV 99 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence 5789999999999999999999997 478888 8763 1222 2322 23322
Q ss_pred -c------cCchhhhcCCCEEEEeeCcccHHHHHHHH
Q 023866 62 -L------SDNNAVVEYSDVVVFSVKPQVDKAAVITE 91 (276)
Q Consensus 62 -~------~~~~~~~~~aDvI~lav~~~~~~~vl~~~ 91 (276)
. .+..++++++|+||.|+.....+-++.++
T Consensus 100 ~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~ 136 (338)
T PRK12475 100 PVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDL 136 (338)
T ss_pred EEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHH
Confidence 1 12346678999999999766665555544
No 236
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=97.31 E-value=0.00062 Score=59.39 Aligned_cols=62 Identities=23% Similarity=0.286 Sum_probs=45.0
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH----HHH----c--Ccee--ccCchhhhcCCCEEEEee
Q 023866 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES----I--GVKV--LSDNNAVVEYSDVVVFSV 79 (276)
Q Consensus 13 IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~----~--g~~~--~~~~~~~~~~aDvI~lav 79 (276)
|+|||+|.||..++..+...|+ . +|+++ |+++++.+. +.+ . ...+ +.+ .+.+++||+||+++
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l-~--eV~L~-Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d-~~~l~dADiVIit~ 74 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKEL-G--DVVLL-DIVEGLPQGKALDISQAAPILGSDTKVTGTND-YEDIAGSDVVVITA 74 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCC-c--EEEEE-eCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCC-HHHhCCCCEEEEec
Confidence 6899999999999999888775 2 89999 998775431 111 1 1222 234 45589999999987
No 237
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.30 E-value=0.00064 Score=59.65 Aligned_cols=72 Identities=14% Similarity=0.199 Sum_probs=49.0
Q ss_pred CCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH--HHHH--cCcee--ccCc---hhhhcCCCE
Q 023866 5 PIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD--AFES--IGVKV--LSDN---NAVVEYSDV 74 (276)
Q Consensus 5 ~~~~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~--~l~~--~g~~~--~~~~---~~~~~~aDv 74 (276)
|.-.++.||+|||+ |++|+.++..|...+. ..++.++ |++....+ ++.+ ....+ .++. .+.+++||+
T Consensus 3 ~~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~--~~elvL~-Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDv 79 (321)
T PTZ00325 3 PSALKMFKVAVLGAAGGIGQPLSLLLKQNPH--VSELSLY-DIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADL 79 (321)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHhcCCC--CCEEEEE-ecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCE
Confidence 44457889999999 9999999999986664 3488999 88432221 2222 12222 2221 567899999
Q ss_pred EEEee
Q 023866 75 VVFSV 79 (276)
Q Consensus 75 I~lav 79 (276)
||++.
T Consensus 80 VVita 84 (321)
T PTZ00325 80 VLICA 84 (321)
T ss_pred EEECC
Confidence 99987
No 238
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.27 E-value=0.00088 Score=59.53 Aligned_cols=79 Identities=15% Similarity=0.204 Sum_probs=50.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----cCc-e-eccCch-hhhcCCCEEEEeeC
Q 023866 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGV-K-VLSDNN-AVVEYSDVVVFSVK 80 (276)
Q Consensus 10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g~-~-~~~~~~-~~~~~aDvI~lav~ 80 (276)
|+||+|||+ |.+|..+++.|.+.. ..++...++|+ +..+.+.+ .+. . ...+.. ....++|+||+|+|
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p---~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP 77 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHP---EVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALP 77 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCC---CceEEEEECcc-ccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCC
Confidence 479999997 999999999988652 12665442643 22222222 111 0 122222 24467999999999
Q ss_pred cccHHHHHHHHh
Q 023866 81 PQVDKAAVITEE 92 (276)
Q Consensus 81 ~~~~~~vl~~~~ 92 (276)
+....++...+.
T Consensus 78 ~~~~~~~v~~a~ 89 (343)
T PRK00436 78 HGVSMDLAPQLL 89 (343)
T ss_pred cHHHHHHHHHHH
Confidence 998888877763
No 239
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=97.24 E-value=0.002 Score=53.18 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=30.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (276)
...+|.|||+|.+|+.++..|.+.|. .+++++ |.+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gv---g~i~lv-D~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGV---GNLKLV-DFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCC---CeEEEE-eCC
Confidence 35789999999999999999999997 368888 776
No 240
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.23 E-value=0.0019 Score=56.63 Aligned_cols=77 Identities=13% Similarity=0.223 Sum_probs=57.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee--ccCchhhhc----CCCEEEEeeCccc
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV--LSDNNAVVE----YSDVVVFSVKPQV 83 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~--~~~~~~~~~----~aDvI~lav~~~~ 83 (276)
..+|+|+|+|.+|..-.+-....|. +|+++ +|++++.+.+++.|... .....+..+ .+|+|+.++++..
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga----~Via~-~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~~~~ 241 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGA----EVIAI-TRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVGPAT 241 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC----eEEEE-eCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCChhh
Confidence 4689999999999866665555787 99999 99999999999988652 211222222 3999999999667
Q ss_pred HHHHHHHH
Q 023866 84 DKAAVITE 91 (276)
Q Consensus 84 ~~~vl~~~ 91 (276)
+...+.-+
T Consensus 242 ~~~~l~~l 249 (339)
T COG1064 242 LEPSLKAL 249 (339)
T ss_pred HHHHHHHH
Confidence 77777665
No 241
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.22 E-value=0.00075 Score=58.84 Aligned_cols=64 Identities=17% Similarity=0.299 Sum_probs=47.2
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-------c-C-ceec-cCchhhhcCCCEEEEee
Q 023866 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------I-G-VKVL-SDNNAVVEYSDVVVFSV 79 (276)
Q Consensus 13 IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-------~-g-~~~~-~~~~~~~~~aDvI~lav 79 (276)
|+|||+|.+|++++..|...|.. .+++++ |+++++++.... . . ..+. .+..+.+++||+||++.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~--~el~l~-D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIita 74 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLA--SELVLV-DVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITA 74 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCC--CEEEEE-eCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcC
Confidence 68999999999999999888852 389999 998887654332 1 1 1221 22246789999999998
No 242
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=97.21 E-value=0.00076 Score=53.48 Aligned_cols=79 Identities=14% Similarity=0.182 Sum_probs=53.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHH--hCCCCCCCeEEEEeCCCHHHHHHHHHcCceec--cCchhhhc--CCCEEEEeeCcc
Q 023866 9 ESFILGFIGAGKMAESIAKGVA--KSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--SDNNAVVE--YSDVVVFSVKPQ 82 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~--~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~--~~~~~~~~--~aDvI~lav~~~ 82 (276)
++-++.+||+|++|.+++..-. +.|+ +|...+|.++++.-.-. .++.+. ++.+..++ +.|+.+||||..
T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~~~~~~----~iv~~FDv~~~~VG~~~-~~v~V~~~d~le~~v~~~dv~iaiLtVPa~ 157 (211)
T COG2344 83 KTTNVIIVGVGNLGRALLNYNFSKKNGM----KIVAAFDVDPDKVGTKI-GDVPVYDLDDLEKFVKKNDVEIAILTVPAE 157 (211)
T ss_pred cceeEEEEccChHHHHHhcCcchhhcCc----eEEEEecCCHHHhCccc-CCeeeechHHHHHHHHhcCccEEEEEccHH
Confidence 5678999999999999987532 4555 66533399887542111 234432 33444455 689999999998
Q ss_pred cHHHHHHHHh
Q 023866 83 VDKAAVITEE 92 (276)
Q Consensus 83 ~~~~vl~~~~ 92 (276)
...++...+.
T Consensus 158 ~AQ~vad~Lv 167 (211)
T COG2344 158 HAQEVADRLV 167 (211)
T ss_pred HHHHHHHHHH
Confidence 8888887774
No 243
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.20 E-value=0.002 Score=61.68 Aligned_cols=69 Identities=16% Similarity=0.280 Sum_probs=56.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee-ccCc--hhh-----hcCCCEEEEeeCc
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LSDN--NAV-----VEYSDVVVFSVKP 81 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-~~~~--~~~-----~~~aDvI~lav~~ 81 (276)
..+|-|+|+|.+|..+++.|.+.|+ ++++. |.|+++.+.+++.|..+ ..|. .+. +++||.+++++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~----~vvvI-D~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d 474 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM----RITVL-ERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNE 474 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC----CEEEE-ECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCC
Confidence 4689999999999999999999998 99999 99999999998877653 2221 221 5689999999987
Q ss_pred cc
Q 023866 82 QV 83 (276)
Q Consensus 82 ~~ 83 (276)
+.
T Consensus 475 ~~ 476 (601)
T PRK03659 475 PE 476 (601)
T ss_pred HH
Confidence 54
No 244
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.19 E-value=0.0015 Score=60.45 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=50.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEe
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFS 78 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~la 78 (276)
+.+||.|||+|..|.+.|..|.+.|+ +|+++ |+.+.....+.+.|+.......+.+.++|+||.+
T Consensus 8 ~~~~i~viG~G~~G~~~a~~l~~~G~----~v~~~-D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~s 72 (460)
T PRK01390 8 AGKTVAVFGLGGSGLATARALVAGGA----EVIAW-DDNPASRAKAAAAGITTADLRTADWSGFAALVLS 72 (460)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHCCC----EEEEE-CCChhhHHHHHhcCccccCCChhHHcCCCEEEEC
Confidence 45789999999999999999999999 99999 9776555556667776533222335689999974
No 245
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.19 E-value=0.0021 Score=46.63 Aligned_cols=73 Identities=11% Similarity=0.178 Sum_probs=50.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-cCchhhhcCCCEEEEeeCcccHHHH
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDNNAVVEYSDVVVFSVKPQVDKAA 87 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~~~~~~~~aDvI~lav~~~~~~~v 87 (276)
+.++|.|||.|.+|..=++.|++.|- +|+++ .++.+..+ ..++.. ....+.++++|+||.++.+..+.+-
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA----~v~vi-s~~~~~~~----~~i~~~~~~~~~~l~~~~lV~~at~d~~~n~~ 76 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGA----KVTVI-SPEIEFSE----GLIQLIRREFEEDLDGADLVFAATDDPELNEA 76 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTB----EEEEE-ESSEHHHH----TSCEEEESS-GGGCTTESEEEE-SS-HHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-CCchhhhh----hHHHHHhhhHHHHHhhheEEEecCCCHHHHHH
Confidence 56899999999999999999999998 99999 77651111 222221 2233557889999999987765544
Q ss_pred HHH
Q 023866 88 VIT 90 (276)
Q Consensus 88 l~~ 90 (276)
+.+
T Consensus 77 i~~ 79 (103)
T PF13241_consen 77 IYA 79 (103)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 246
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=97.14 E-value=0.0015 Score=54.57 Aligned_cols=64 Identities=19% Similarity=0.327 Sum_probs=50.5
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCH--HHHHHHHHcCceec-------cCchhhhcCCCEEEEeeCc
Q 023866 13 LGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL--KRRDAFESIGVKVL-------SDNNAVVEYSDVVVFSVKP 81 (276)
Q Consensus 13 IgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~--~~~~~l~~~g~~~~-------~~~~~~~~~aDvI~lav~~ 81 (276)
|.|+|+ |.+|+.++..|++.++ +|.+. .|++ +..+.+...|+.+. .+..++++++|.||+++++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~----~V~~l-~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF----SVRAL-VRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG----CEEEE-ESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhCCC----CcEEE-EeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 789986 9999999999999998 99988 7775 34667777887642 1233567899999999983
No 247
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=97.14 E-value=0.001 Score=57.78 Aligned_cols=66 Identities=20% Similarity=0.310 Sum_probs=47.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH----HHHH------cCceecc-CchhhhcCCCEEEEee
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD----AFES------IGVKVLS-DNNAVVEYSDVVVFSV 79 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~----~l~~------~g~~~~~-~~~~~~~~aDvI~lav 79 (276)
+||+|||+|++|++++..|...++ ..++.++ |+++++.+ .|.+ ....+.. ...+.++++|+|+++-
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~--~~el~Li-Di~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGL--GSELVLI-DINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccc--cceEEEE-EcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeC
Confidence 699999999999999999977765 2389999 99855432 2222 1233333 2346689999999987
No 248
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=97.12 E-value=0.0023 Score=59.28 Aligned_cols=70 Identities=19% Similarity=0.313 Sum_probs=52.7
Q ss_pred CCCCCCCeEEEEcccHHHHH-HHHHHHhCCCCCCCeEEEEeCCCHH-HHHHHHHcCceec-cCchhhhcCCCEEEEee
Q 023866 5 PIPAESFILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESIGVKVL-SDNNAVVEYSDVVVFSV 79 (276)
Q Consensus 5 ~~~~~~~kIgiIG~G~mG~~-la~~l~~~g~~~~~~V~v~~~r~~~-~~~~l~~~g~~~~-~~~~~~~~~aDvI~lav 79 (276)
|+-.+.++|.|||+|..|.+ +|+.|.+.|+ +|+++ |.++. ..+.+.+.|+.+. ....+.+.++|+||.+-
T Consensus 2 ~~~~~~~~v~viG~G~sG~s~~a~~L~~~G~----~V~~~-D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~sp 74 (461)
T PRK00421 2 PELRRIKRIHFVGIGGIGMSGLAEVLLNLGY----KVSGS-DLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSS 74 (461)
T ss_pred CCcCCCCEEEEEEEchhhHHHHHHHHHhCCC----eEEEE-CCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECC
Confidence 33445678999999999999 8999999999 99999 86542 3445666787754 23344567899999864
No 249
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.11 E-value=0.0014 Score=58.25 Aligned_cols=78 Identities=17% Similarity=0.212 Sum_probs=51.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEE-EEeCCCHHHHHHHHH-c----C---ceec-cCchhhhcCCCEEEEee
Q 023866 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-I----G---VKVL-SDNNAVVEYSDVVVFSV 79 (276)
Q Consensus 11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~-v~~~r~~~~~~~l~~-~----g---~~~~-~~~~~~~~~aDvI~lav 79 (276)
+||+|||+ |.+|..+++.|.+. +..++. ++ +++++.-+.+.+ . + ..+. .+..+..+++|+||+|+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h---P~~el~~l~-~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~al 76 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH---PEVEITYLV-SSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLAL 76 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC---CCceEEEEe-ccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECC
Confidence 58999998 99999999988754 223666 54 544322222222 1 2 1121 13345556899999999
Q ss_pred CcccHHHHHHHHh
Q 023866 80 KPQVDKAAVITEE 92 (276)
Q Consensus 80 ~~~~~~~vl~~~~ 92 (276)
|.....++...+.
T Consensus 77 P~~~s~~~~~~~~ 89 (346)
T TIGR01850 77 PHGVSAELAPELL 89 (346)
T ss_pred CchHHHHHHHHHH
Confidence 9988888887763
No 250
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.10 E-value=0.0019 Score=57.98 Aligned_cols=69 Identities=16% Similarity=0.152 Sum_probs=50.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCC-CCeEEE----EeCCCHHHHHHHH----H------cCceeccCchhhhcCCC
Q 023866 10 SFILGFIGA-GKMAESIAKGVAKSGVLP-PDRICT----AVHSNLKRRDAFE----S------IGVKVLSDNNAVVEYSD 73 (276)
Q Consensus 10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~-~~~V~v----~~~r~~~~~~~l~----~------~g~~~~~~~~~~~~~aD 73 (276)
..||+|||+ |++|.+++..|...+.+. .++|.+ + |++.++++-.. + .++.+..+..+.+++||
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~di-D~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaD 122 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGS-ERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDAD 122 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEecc-CccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCC
Confidence 489999999 999999999999888754 223554 4 88887764322 1 13444455667789999
Q ss_pred EEEEee
Q 023866 74 VVVFSV 79 (276)
Q Consensus 74 vI~lav 79 (276)
+||++-
T Consensus 123 IVVitA 128 (387)
T TIGR01757 123 WALLIG 128 (387)
T ss_pred EEEECC
Confidence 999975
No 251
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.10 E-value=0.0022 Score=59.52 Aligned_cols=69 Identities=26% Similarity=0.289 Sum_probs=52.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHH-HHcCceecc--CchhhhcCCCEEEEe--eCcc
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-ESIGVKVLS--DNNAVVEYSDVVVFS--VKPQ 82 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l-~~~g~~~~~--~~~~~~~~aDvI~la--v~~~ 82 (276)
..+||.|+|+|..|.+++..|.+.|+ +|+++ |+++.....+ .+.|+.+.. ...+.+.++|+||.+ +|+.
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~----~V~~~-D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~ 87 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGC----DVVVA-DDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPD 87 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCC----EEEEE-CCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCC
Confidence 35789999999999999999999998 99999 9877655443 346876542 234446789999986 4554
No 252
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.07 E-value=0.003 Score=60.60 Aligned_cols=69 Identities=14% Similarity=0.276 Sum_probs=56.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-cC--chh-----hhcCCCEEEEeeCc
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SD--NNA-----VVEYSDVVVFSVKP 81 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-~~--~~~-----~~~~aDvI~lav~~ 81 (276)
..+|-|+|+|++|..+++.|.+.|+ ++++. |.|+++++.+++.|..+. .| ..+ -++++|.+++++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~----~vvvI-D~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d 474 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV----KMTVL-DHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDD 474 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC----CEEEE-ECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCC
Confidence 4689999999999999999999998 99999 999999999988876532 22 122 24589999999976
Q ss_pred cc
Q 023866 82 QV 83 (276)
Q Consensus 82 ~~ 83 (276)
+.
T Consensus 475 ~~ 476 (621)
T PRK03562 475 PQ 476 (621)
T ss_pred HH
Confidence 54
No 253
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.07 E-value=0.0029 Score=58.91 Aligned_cols=66 Identities=21% Similarity=0.264 Sum_probs=49.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH-H----HHHHHHcCceecc-CchhhhcCCCEEEEee
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-R----RDAFESIGVKVLS-DNNAVVEYSDVVVFSV 79 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~-~----~~~l~~~g~~~~~-~~~~~~~~aDvI~lav 79 (276)
+.++|.|||.|..|.++|..|.+.|+ +|+++ |+++. . .+.+++.|+.+.. +..+...++|+||++.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~----~V~~~-d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~ 86 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGA----RVTVV-DDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSP 86 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECC
Confidence 35789999999999999999999998 99999 86542 2 3446567877542 2222345799999986
No 254
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.07 E-value=0.0018 Score=57.11 Aligned_cols=67 Identities=15% Similarity=0.326 Sum_probs=51.7
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhC-CCCCCCeEEEEeCCCHHHHHHHHH-cC-ceeccCchhhhcCCCEEEEeeC
Q 023866 9 ESFILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES-IG-VKVLSDNNAVVEYSDVVVFSVK 80 (276)
Q Consensus 9 ~~~kIgiIG~-G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~-~g-~~~~~~~~~~~~~aDvI~lav~ 80 (276)
+.++|.|+|+ |.||+.+++.|.+. | +.+++++ +|++++++.+.. .+ ..+ .+..+.+.++|+||.++-
T Consensus 154 ~~k~VLVtGAtG~IGs~lar~L~~~~g---v~~lilv-~R~~~rl~~La~el~~~~i-~~l~~~l~~aDiVv~~ts 224 (340)
T PRK14982 154 SKATVAVVGATGDIGSAVCRWLDAKTG---VAELLLV-ARQQERLQELQAELGGGKI-LSLEEALPEADIVVWVAS 224 (340)
T ss_pred CCCEEEEEccChHHHHHHHHHHHhhCC---CCEEEEE-cCCHHHHHHHHHHhccccH-HhHHHHHccCCEEEECCc
Confidence 4589999999 89999999999754 3 2489999 999998888765 22 222 245577889999998874
No 255
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=97.06 E-value=0.0038 Score=52.49 Aligned_cols=113 Identities=16% Similarity=0.181 Sum_probs=72.4
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHH-----HHHH---HcCceeccCchhhhcCCCEEEEeeC
Q 023866 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR-----DAFE---SIGVKVLSDNNAVVEYSDVVVFSVK 80 (276)
Q Consensus 10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~-----~~l~---~~g~~~~~~~~~~~~~aDvI~lav~ 80 (276)
++||+|.|+ |+||+.+.+.+.+... -++...++|.++.. ..+. ..|+.+.++......++|++|=-+.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~---~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~ 78 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPD---LELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTT 78 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCC---ceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECCC
Confidence 689999999 9999999999887652 15554337765432 1121 2456666666666788999999998
Q ss_pred cccHHHHHHHHhhccccccCCcccCCCCcccHHHHHH---HcCCCcEEEEecCc
Q 023866 81 PQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVE---WTGHSRFIRVMPNT 131 (276)
Q Consensus 81 ~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~---~l~~~~vv~~~p~~ 131 (276)
|....+.++-..+.+ .+.+-...|. +.++++. +....+++.+ ||.
T Consensus 79 P~~~~~~l~~~~~~~----~~lVIGTTGf-~~e~~~~l~~~a~~v~vv~a-~Nf 126 (266)
T COG0289 79 PEATLENLEFALEHG----KPLVIGTTGF-TEEQLEKLREAAEKVPVVIA-PNF 126 (266)
T ss_pred chhhHHHHHHHHHcC----CCeEEECCCC-CHHHHHHHHHHHhhCCEEEe-ccc
Confidence 888777766553222 4455555777 6655443 3333444443 554
No 256
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.06 E-value=0.0011 Score=58.04 Aligned_cols=65 Identities=25% Similarity=0.313 Sum_probs=46.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCH--HHHHH----HHH----cC--cee--ccCchhhhcCCCEE
Q 023866 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL--KRRDA----FES----IG--VKV--LSDNNAVVEYSDVV 75 (276)
Q Consensus 11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~--~~~~~----l~~----~g--~~~--~~~~~~~~~~aDvI 75 (276)
|||+|||+ |.+|..++..|...|+ ..+|+++ ||++ ++++. +.+ .+ ..+ ..+ .+.+.+||+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~--~~~v~lv-d~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiV 76 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDV--VKEINLI-SRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIV 76 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC--CCEEEEE-ECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEE
Confidence 69999998 9999999999999887 2268888 8854 33321 111 22 222 234 4558999999
Q ss_pred EEee
Q 023866 76 VFSV 79 (276)
Q Consensus 76 ~lav 79 (276)
|+++
T Consensus 77 iita 80 (309)
T cd05294 77 IITA 80 (309)
T ss_pred EEec
Confidence 9998
No 257
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.06 E-value=0.0023 Score=58.36 Aligned_cols=70 Identities=11% Similarity=0.122 Sum_probs=50.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCC-----CCeEEEEeCCCHHHHHHHH----H------cCceeccCchhhhcCC
Q 023866 9 ESFILGFIGA-GKMAESIAKGVAKSGVLP-----PDRICTAVHSNLKRRDAFE----S------IGVKVLSDNNAVVEYS 72 (276)
Q Consensus 9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~-----~~~V~v~~~r~~~~~~~l~----~------~g~~~~~~~~~~~~~a 72 (276)
+..||+|||+ |++|.+++..|...+.+. ..++.++ |+++++++-.. + ..+.+..+..+.+++|
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvli-D~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kda 177 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGS-ERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDA 177 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEE-cCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcC
Confidence 3579999999 999999999998772211 1368888 99988765322 2 1244445666778999
Q ss_pred CEEEEee
Q 023866 73 DVVVFSV 79 (276)
Q Consensus 73 DvI~lav 79 (276)
|+||++-
T Consensus 178 DiVVitA 184 (444)
T PLN00112 178 EWALLIG 184 (444)
T ss_pred CEEEECC
Confidence 9999976
No 258
>CHL00194 ycf39 Ycf39; Provisional
Probab=97.05 E-value=0.0018 Score=56.79 Aligned_cols=65 Identities=17% Similarity=0.249 Sum_probs=50.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec----cC---chhhhcCCCEEEEeeC
Q 023866 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL----SD---NNAVVEYSDVVVFSVK 80 (276)
Q Consensus 11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~----~~---~~~~~~~aDvI~lav~ 80 (276)
|||.|.|+ |.+|+.+++.|++.|| +|++. .|++++...+...++.+. .+ ..++++++|+||-++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~----~V~~l-~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY----QVRCL-VRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC----eEEEE-EcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 58999985 9999999999999999 99999 898877665555565432 12 2455788999998763
No 259
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.05 E-value=0.0035 Score=52.30 Aligned_cols=78 Identities=12% Similarity=0.150 Sum_probs=53.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEE-EEeCC----------CHHHHHHHHH-cC-------ceeccCchhh
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHS----------NLKRRDAFES-IG-------VKVLSDNNAV 68 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r----------~~~~~~~l~~-~g-------~~~~~~~~~~ 68 (276)
+..++|+|.|.|++|+.+++.|.+.|. +|+ +. |. +.+.+..+++ .| .... ++.++
T Consensus 29 l~~~~v~I~G~G~VG~~~a~~L~~~g~----~vv~v~-D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i 102 (227)
T cd01076 29 LAGARVAIQGFGNVGSHAARFLHEAGA----KVVAVS-DSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEEL 102 (227)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEE-CCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccc
Confidence 456899999999999999999999998 877 66 77 6666665554 33 1111 22222
Q ss_pred -hcCCCEEEEeeCcccH-HHHHHHH
Q 023866 69 -VEYSDVVVFSVKPQVD-KAAVITE 91 (276)
Q Consensus 69 -~~~aDvI~lav~~~~~-~~vl~~~ 91 (276)
-.+|||++.|.+...+ .+.+..+
T Consensus 103 ~~~~~Dvlip~a~~~~i~~~~~~~l 127 (227)
T cd01076 103 LELDCDILIPAALENQITADNADRI 127 (227)
T ss_pred eeecccEEEecCccCccCHHHHhhc
Confidence 2379999999866543 4555555
No 260
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.04 E-value=0.002 Score=53.78 Aligned_cols=82 Identities=21% Similarity=0.236 Sum_probs=55.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC----HHHH-------HHHHH-cCc-eeccCchhhhcCCCE
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN----LKRR-------DAFES-IGV-KVLSDNNAVVEYSDV 74 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~----~~~~-------~~l~~-~g~-~~~~~~~~~~~~aDv 74 (276)
.+.+||.|+|+|.+|.+++..|.+.|. +.++|+++ ||+ .++. +.+.+ .+. ....+..+.++++|+
T Consensus 23 l~~~rvlvlGAGgAg~aiA~~L~~~G~-~~~~i~iv-dr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dv 100 (226)
T cd05311 23 IEEVKIVINGAGAAGIAIARLLLAAGA-KPENIVVV-DSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADV 100 (226)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHcCc-CcceEEEE-eCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCE
Confidence 355799999999999999999999886 22379999 998 4443 22322 221 111244567788999
Q ss_pred EEEeeCcccH-HHHHHHH
Q 023866 75 VVFSVKPQVD-KAAVITE 91 (276)
Q Consensus 75 I~lav~~~~~-~~vl~~~ 91 (276)
||=++++..+ +++++.+
T Consensus 101 lIgaT~~G~~~~~~l~~m 118 (226)
T cd05311 101 FIGVSRPGVVKKEMIKKM 118 (226)
T ss_pred EEeCCCCCCCCHHHHHhh
Confidence 9999875443 3455544
No 261
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.03 E-value=0.0024 Score=55.36 Aligned_cols=69 Identities=25% Similarity=0.206 Sum_probs=47.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH---HHHHHHHH----cC--cee--c--cC---chhhhcCC
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---KRRDAFES----IG--VKV--L--SD---NNAVVEYS 72 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~---~~~~~l~~----~g--~~~--~--~~---~~~~~~~a 72 (276)
+.+++.|+|+|.+|.+++..|.+.|. .+|+++ +|++ ++++.+.+ .+ +.+ . .+ ..+.++.+
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~---~~V~I~-~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~ 200 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGA---KEITIF-NIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASS 200 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC---CEEEEE-eCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccC
Confidence 45689999999999999999999997 249999 9986 66655543 11 111 1 11 12234567
Q ss_pred CEEEEeeCc
Q 023866 73 DVVVFSVKP 81 (276)
Q Consensus 73 DvI~lav~~ 81 (276)
|+||-++|.
T Consensus 201 DilINaTp~ 209 (289)
T PRK12548 201 DILVNATLV 209 (289)
T ss_pred CEEEEeCCC
Confidence 888888764
No 262
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.02 E-value=0.0028 Score=58.40 Aligned_cols=68 Identities=19% Similarity=0.265 Sum_probs=50.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-HHH----HHHHHcCceec--cCchhhhcCCCEEEEeeC
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRR----DAFESIGVKVL--SDNNAVVEYSDVVVFSVK 80 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~----~~l~~~g~~~~--~~~~~~~~~aDvI~lav~ 80 (276)
++.+++.|+|.|.+|.++|..|.+.|+ +|+++ +++. +.. +++.+.|+.+. ....+....+|+||.++-
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~----~V~~~-d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g 77 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA----KVILT-DEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPG 77 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCC
Confidence 356899999999999999999999999 99999 8874 333 34444566542 223344567999999873
No 263
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=97.01 E-value=0.0045 Score=47.65 Aligned_cols=32 Identities=28% Similarity=0.444 Sum_probs=28.2
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (276)
Q Consensus 12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (276)
||.|||+|.+|+.+++.|.+.|+ .+++++ |.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv---~~i~iv-D~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV---GKITLI-DFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---CEEEEE-cCC
Confidence 68999999999999999999997 468888 655
No 264
>PRK05442 malate dehydrogenase; Provisional
Probab=97.00 E-value=0.0016 Score=57.42 Aligned_cols=70 Identities=19% Similarity=0.250 Sum_probs=48.6
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCC---CCeEEEEeCCCHH--HHH----HHHH------cCceeccCchhhhcCC
Q 023866 9 ESFILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNLK--RRD----AFES------IGVKVLSDNNAVVEYS 72 (276)
Q Consensus 9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~---~~~V~v~~~r~~~--~~~----~l~~------~g~~~~~~~~~~~~~a 72 (276)
+.+||+|||+ |++|++++..|...+.+. +.++.++ |+++. +++ .+.+ ....+..+..+.+++|
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~Li-Di~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~da 81 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLL-EIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDA 81 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEE-ecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCC
Confidence 4579999998 999999999988776532 2368888 88542 221 2222 1234455556778999
Q ss_pred CEEEEee
Q 023866 73 DVVVFSV 79 (276)
Q Consensus 73 DvI~lav 79 (276)
|+||++-
T Consensus 82 DiVVita 88 (326)
T PRK05442 82 DVALLVG 88 (326)
T ss_pred CEEEEeC
Confidence 9999975
No 265
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.00 E-value=0.0023 Score=55.91 Aligned_cols=66 Identities=14% Similarity=0.153 Sum_probs=45.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHH--HHHHHH--cCceec---cC--chhhhcCCCEEEEee
Q 023866 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKR--RDAFES--IGVKVL---SD--NNAVVEYSDVVVFSV 79 (276)
Q Consensus 11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~--~~~l~~--~g~~~~---~~--~~~~~~~aDvI~lav 79 (276)
|||+|||+ |++|++++..|...+. ..++.++ |++..+ +-.|.+ ....+. .+ ..+.+++||+||++.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~--~~elvLi-Di~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvita 76 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPL--VSELALY-DIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPA 76 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--CcEEEEE-ecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeC
Confidence 69999999 9999999999987775 3478898 887111 112333 112222 22 256789999999986
No 266
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.99 E-value=0.0034 Score=58.60 Aligned_cols=65 Identities=18% Similarity=0.186 Sum_probs=52.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceecc--CchhhhcCCCEEEEee
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLS--DNNAVVEYSDVVVFSV 79 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~--~~~~~~~~aDvI~lav 79 (276)
.++|.|+|+|..|.+.++.|.+.|. +|+++ |+++++.+.+++.|+.+.. ...+.+.++|+||.+-
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~----~v~~~-D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~Sp 78 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGA----RPTVC-DDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSP 78 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECC
Confidence 4689999999999999999999998 99999 9887777666667876532 2334567899999975
No 267
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.96 E-value=0.0041 Score=47.40 Aligned_cols=77 Identities=22% Similarity=0.332 Sum_probs=49.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-------------------HHHHHH----HH--cCceec--
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRDAF----ES--IGVKVL-- 62 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~~~l----~~--~g~~~~-- 62 (276)
..||.|+|+|.+|+.++..|.+.|. .+++++ |.+. .|.+.+ .+ .++.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv---~~i~lv-D~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~ 77 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV---GKITLV-DDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAI 77 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT---SEEEEE-ESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC---Cceeec-CCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeee
Confidence 4689999999999999999999997 467777 5432 122222 22 233221
Q ss_pred ------cCchhhhcCCCEEEEeeCcccHHHHHHH
Q 023866 63 ------SDNNAVVEYSDVVVFSVKPQVDKAAVIT 90 (276)
Q Consensus 63 ------~~~~~~~~~aDvI~lav~~~~~~~vl~~ 90 (276)
....+.++++|+||.|+.+...+..+.+
T Consensus 78 ~~~~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~ 111 (135)
T PF00899_consen 78 PEKIDEENIEELLKDYDIVIDCVDSLAARLLLNE 111 (135)
T ss_dssp ESHCSHHHHHHHHHTSSEEEEESSSHHHHHHHHH
T ss_pred ecccccccccccccCCCEEEEecCCHHHHHHHHH
Confidence 1123556789999999876655544444
No 268
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=96.94 E-value=0.0028 Score=55.71 Aligned_cols=67 Identities=18% Similarity=0.272 Sum_probs=48.2
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cC------------------ceeccCchhhhcCCC
Q 023866 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG------------------VKVLSDNNAVVEYSD 73 (276)
Q Consensus 13 IgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g------------------~~~~~~~~~~~~~aD 73 (276)
|||+|+|.+|...++.+.+.. .-+|..++|.++++...+.. .| +.+..+++++..++|
T Consensus 1 VaInG~GrIGr~varav~~~~---d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vD 77 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQD---DMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVD 77 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCC---CcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCC
Confidence 699999999999999987532 12666544888876555443 22 333456778888999
Q ss_pred EEEEeeCcc
Q 023866 74 VVVFSVKPQ 82 (276)
Q Consensus 74 vI~lav~~~ 82 (276)
+|+.|+|..
T Consensus 78 iVve~Tp~~ 86 (333)
T TIGR01546 78 IVVDATPGG 86 (333)
T ss_pred EEEECCCCC
Confidence 999999754
No 269
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.94 E-value=0.0038 Score=57.80 Aligned_cols=65 Identities=15% Similarity=0.237 Sum_probs=50.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH-----HHHHHHHcCceec--cCchhhhcCCCEEEEee
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-----RRDAFESIGVKVL--SDNNAVVEYSDVVVFSV 79 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~-----~~~~l~~~g~~~~--~~~~~~~~~aDvI~lav 79 (276)
.+||+|+|.|.-|.++++.|.+.|+ +|+++ |+++. ..+++.+.|+.+. ....+.+.++|+||.+.
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~----~V~~~-D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Sp 85 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGA----KVTAF-DKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTP 85 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCC----EEEEE-CCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECC
Confidence 4789999999999999999999999 99999 87642 2245666787653 22335467899999973
No 270
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.94 E-value=0.0029 Score=54.62 Aligned_cols=68 Identities=21% Similarity=0.274 Sum_probs=49.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc-----Cc---eecc--CchhhhcCCCEEEEe
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-----GV---KVLS--DNNAVVEYSDVVVFS 78 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-----g~---~~~~--~~~~~~~~aDvI~la 78 (276)
+.+++.|+|+|..|++++..|.+.|. .+|+++ +|++++++.+.+. +. .... +..+...++|+||=+
T Consensus 126 ~~k~vlilGaGGaarAi~~aL~~~g~---~~i~i~-nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINa 201 (283)
T PRK14027 126 KLDSVVQVGAGGVGNAVAYALVTHGV---QKLQVA-DLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNA 201 (283)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHCCC---CEEEEE-cCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEc
Confidence 34689999999999999999999886 479999 9999999888651 21 1111 112234567888877
Q ss_pred eC
Q 023866 79 VK 80 (276)
Q Consensus 79 v~ 80 (276)
+|
T Consensus 202 Tp 203 (283)
T PRK14027 202 TP 203 (283)
T ss_pred CC
Confidence 76
No 271
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.93 E-value=0.0016 Score=57.23 Aligned_cols=68 Identities=15% Similarity=0.173 Sum_probs=47.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCC---CCeEEEEeCCCHHH--HH----HHHH------cCceeccCchhhhcCCCE
Q 023866 11 FILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNLKR--RD----AFES------IGVKVLSDNNAVVEYSDV 74 (276)
Q Consensus 11 ~kIgiIG~-G~mG~~la~~l~~~g~~~---~~~V~v~~~r~~~~--~~----~l~~------~g~~~~~~~~~~~~~aDv 74 (276)
+||+|||+ |++|.+++..|...+... +.++.++ |++++. ++ .+.+ ..+.+..+..+.+++||+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~-Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDi 81 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLL-ELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADW 81 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEE-ecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCE
Confidence 69999999 999999999998877632 1267888 885322 22 2222 123444555677899999
Q ss_pred EEEee
Q 023866 75 VVFSV 79 (276)
Q Consensus 75 I~lav 79 (276)
||++-
T Consensus 82 vvita 86 (322)
T cd01338 82 ALLVG 86 (322)
T ss_pred EEEeC
Confidence 99986
No 272
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.93 E-value=0.0059 Score=56.26 Aligned_cols=70 Identities=14% Similarity=0.183 Sum_probs=54.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc--Ccee-ccCc--h-----hhhcCCCEEEEe
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--GVKV-LSDN--N-----AVVEYSDVVVFS 78 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~--g~~~-~~~~--~-----~~~~~aDvI~la 78 (276)
.+++|-|+|+|.+|..+++.|.+.|+ +|+++ ++++++.+.+.+. +..+ ..|. . .-++++|.||++
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~----~v~vi-d~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGY----SVKLI-ERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 46889999999999999999999898 99999 9999999888763 4432 2222 1 225689999988
Q ss_pred eCccc
Q 023866 79 VKPQV 83 (276)
Q Consensus 79 v~~~~ 83 (276)
++.+.
T Consensus 305 ~~~~~ 309 (453)
T PRK09496 305 TNDDE 309 (453)
T ss_pred CCCcH
Confidence 87654
No 273
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.93 E-value=0.0046 Score=53.54 Aligned_cols=68 Identities=21% Similarity=0.248 Sum_probs=48.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH---HHHHHHHH-c----C--ceeccCc------hhhhcCC
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---KRRDAFES-I----G--VKVLSDN------NAVVEYS 72 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~---~~~~~l~~-~----g--~~~~~~~------~~~~~~a 72 (276)
+.+++.|||+|..+++++..|.+.|. .+|+++ +|++ ++++.+.+ . + +... +. .+.+.++
T Consensus 123 ~~k~vlvlGaGGaarAi~~~l~~~g~---~~i~i~-nRt~~~~~ka~~la~~~~~~~~~~~~~~-~~~~~~~l~~~~~~a 197 (288)
T PRK12749 123 KGKTMVLLGAGGASTAIGAQGAIEGL---KEIKLF-NRRDEFFDKALAFAQRVNENTDCVVTVT-DLADQQAFAEALASA 197 (288)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC---CEEEEE-eCCccHHHHHHHHHHHhhhccCceEEEe-chhhhhhhhhhcccC
Confidence 44689999999999999999988775 489999 9994 57776654 2 1 1221 11 1234578
Q ss_pred CEEEEeeCc
Q 023866 73 DVVVFSVKP 81 (276)
Q Consensus 73 DvI~lav~~ 81 (276)
|+||-|+|.
T Consensus 198 DivINaTp~ 206 (288)
T PRK12749 198 DILTNGTKV 206 (288)
T ss_pred CEEEECCCC
Confidence 999888875
No 274
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.93 E-value=0.0025 Score=56.39 Aligned_cols=81 Identities=12% Similarity=0.231 Sum_probs=50.5
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH-HHHHcC--ceeccCchhhhcCCCEEEEeeCccc
Q 023866 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD-AFESIG--VKVLSDNNAVVEYSDVVVFSVKPQV 83 (276)
Q Consensus 8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~-~l~~~g--~~~~~~~~~~~~~aDvI~lav~~~~ 83 (276)
++++||+|+|+ |..|.-+.+.|.+.+| +..++....++ ++.. .+.-.| ..+.....+..+++|++|+|+|+..
T Consensus 2 ~~~~~IaIvGATG~vG~eLlrlL~~~~h-P~~~l~~v~s~--~~aG~~l~~~~~~l~~~~~~~~~~~~vD~vFla~p~~~ 78 (336)
T PRK05671 2 SQPLDIAVVGATGTVGEALVQILEERDF-PVGTLHLLASS--ESAGHSVPFAGKNLRVREVDSFDFSQVQLAFFAAGAAV 78 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhhCCC-CceEEEEEECc--ccCCCeeccCCcceEEeeCChHHhcCCCEEEEcCCHHH
Confidence 34589999998 9999999999987776 43454444122 2211 111112 2222111222478999999999877
Q ss_pred HHHHHHHH
Q 023866 84 DKAAVITE 91 (276)
Q Consensus 84 ~~~vl~~~ 91 (276)
..++...+
T Consensus 79 s~~~v~~~ 86 (336)
T PRK05671 79 SRSFAEKA 86 (336)
T ss_pred HHHHHHHH
Confidence 77776665
No 275
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=96.92 E-value=0.0038 Score=53.60 Aligned_cols=65 Identities=20% Similarity=0.226 Sum_probs=49.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCchhhhcCCCEEEEeeCc
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKP 81 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDvI~lav~~ 81 (276)
.++.|+|+|..+.+++..|.+.|. .+|+++ +|++++.+.+.+ .+.....+. ....+|+||=|+|.
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~---~~i~i~-nR~~~~a~~la~~~~~~~~~~~--~~~~~dlvINaTp~ 188 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGF---TDGTIV-ARNEKTGKALAELYGYEWRPDL--GGIEADILVNVTPI 188 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCC---CEEEEE-eCCHHHHHHHHHHhCCcchhhc--ccccCCEEEECCcc
Confidence 489999999999999999998886 369999 999999988876 333221111 12458999988874
No 276
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=96.91 E-value=0.0032 Score=58.03 Aligned_cols=79 Identities=22% Similarity=0.265 Sum_probs=63.4
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHH
Q 023866 10 SFILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDK 85 (276)
Q Consensus 10 ~~kIgiIG~----G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~ 85 (276)
-++|+|||+ |++|..+.++|.+.|| ..+|+.+ +++.+. -.|+.++.+..++-...|+++++||++.+.
T Consensus 7 p~siavvGaS~~~~~~g~~~~~~l~~~gf--~g~v~~V-np~~~~-----i~G~~~~~sl~~lp~~~Dlavi~vp~~~~~ 78 (447)
T TIGR02717 7 PKSVAVIGASRDPGKVGYAIMKNLIEGGY--KGKIYPV-NPKAGE-----ILGVKAYPSVLEIPDPVDLAVIVVPAKYVP 78 (447)
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHhCCC--CCcEEEE-CCCCCc-----cCCccccCCHHHCCCCCCEEEEecCHHHHH
Confidence 378999999 8999999999999997 2357766 655331 258888888888877899999999999999
Q ss_pred HHHHHHhhccc
Q 023866 86 AAVITEEAFGF 96 (276)
Q Consensus 86 ~vl~~~~~~~~ 96 (276)
++++++.+.|.
T Consensus 79 ~~l~e~~~~gv 89 (447)
T TIGR02717 79 QVVEECGEKGV 89 (447)
T ss_pred HHHHHHHhcCC
Confidence 99998854443
No 277
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=96.91 E-value=0.0029 Score=55.65 Aligned_cols=69 Identities=17% Similarity=0.219 Sum_probs=47.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCC---CCeEEEEeCCCH--HHHH----HHHH------cCceeccCchhhhcCCC
Q 023866 10 SFILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNL--KRRD----AFES------IGVKVLSDNNAVVEYSD 73 (276)
Q Consensus 10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~---~~~V~v~~~r~~--~~~~----~l~~------~g~~~~~~~~~~~~~aD 73 (276)
-.||+|||+ |++|++++..|...+... ..++.++ |+++ ++++ .+.+ .+..+..+..+.+++||
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~-Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daD 81 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLL-DIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVD 81 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEE-ecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCC
Confidence 379999998 999999999998877521 1268888 8854 2222 2222 12334345557789999
Q ss_pred EEEEee
Q 023866 74 VVVFSV 79 (276)
Q Consensus 74 vI~lav 79 (276)
+||++-
T Consensus 82 vVVitA 87 (323)
T TIGR01759 82 AALLVG 87 (323)
T ss_pred EEEEeC
Confidence 999986
No 278
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.91 E-value=0.0053 Score=54.44 Aligned_cols=79 Identities=18% Similarity=0.267 Sum_probs=53.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH---------------------HHHH----HHHHc--Ccee
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---------------------KRRD----AFESI--GVKV 61 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~---------------------~~~~----~l~~~--g~~~ 61 (276)
...||.|||+|.+|+.++..|.++|. .+|+++ |.+. .|++ .+++. .+.+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGv---g~i~lv-D~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v 98 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGV---GKVTIV-DRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRV 98 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC---CeEEEE-eCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEE
Confidence 35789999999999999999999997 478888 7752 1222 22221 2221
Q ss_pred --c------cCchhhhcCCCEEEEeeCcccHHHHHHHH
Q 023866 62 --L------SDNNAVVEYSDVVVFSVKPQVDKAAVITE 91 (276)
Q Consensus 62 --~------~~~~~~~~~aDvI~lav~~~~~~~vl~~~ 91 (276)
. .+..+.++++|+||.|+.....+..+.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~ 136 (339)
T PRK07688 99 EAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDA 136 (339)
T ss_pred EEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHH
Confidence 1 11235678899999999766555555444
No 279
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.88 E-value=0.0088 Score=55.71 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=41.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~ 60 (276)
..||.|||+|.+|..-+..+...|- +|+++ |+++++++..++.|.+
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA----~V~a~-D~~~~rle~aeslGA~ 210 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGA----IVRAF-DTRPEVAEQVESMGAE 210 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCe
Confidence 5799999999999998888888887 89999 9999999999888876
No 280
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.87 E-value=0.0056 Score=50.73 Aligned_cols=81 Identities=14% Similarity=0.106 Sum_probs=53.8
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH----------HHHHHHHHc-Cceecc-----Cchhh-h
Q 023866 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL----------KRRDAFESI-GVKVLS-----DNNAV-V 69 (276)
Q Consensus 7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~----------~~~~~l~~~-g~~~~~-----~~~~~-~ 69 (276)
.++.++|+|.|+|++|+.+++.|.+.|. ..|.++ |.+. +.++..++. ++.... +..++ -
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~---~vV~vs-D~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGG---KVLAVS-DPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILG 95 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCC---EEEEEE-cCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCccccee
Confidence 3467899999999999999999999986 134566 8887 666655543 222111 11222 2
Q ss_pred cCCCEEEEeeCcccH-HHHHHHH
Q 023866 70 EYSDVVVFSVKPQVD-KAAVITE 91 (276)
Q Consensus 70 ~~aDvI~lav~~~~~-~~vl~~~ 91 (276)
.+||++|.|.....+ .+...++
T Consensus 96 ~~~DVlipaA~~~~i~~~~a~~l 118 (217)
T cd05211 96 LDVDIFAPCALGNVIDLENAKKL 118 (217)
T ss_pred ccccEEeeccccCccChhhHhhc
Confidence 379999999876643 3444444
No 281
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.86 E-value=0.011 Score=52.54 Aligned_cols=156 Identities=14% Similarity=0.104 Sum_probs=90.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH----c-Cc-e-------------------eccC
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----I-GV-K-------------------VLSD 64 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~-g~-~-------------------~~~~ 64 (276)
|.+|-|+|.|..+--+|..+.+.+. .+|-+. +|...|.+++.+ . +. . +..+
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~~---~~vGi~-~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~ 76 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHGN---CRVGIV-GRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQD 76 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhccC---ceeeee-cCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcC
Confidence 4689999999999999998876553 368888 887777665443 1 10 0 1234
Q ss_pred chhhhcCCCEEEEeeCcccHHHHHHHHhhccccccCC--cccCCCCcc-cHHH-HHHHcCCCcEEEEec----------C
Q 023866 65 NNAVVEYSDVVVFSVKPQVDKAAVITEEAFGFCCCRS--EIERPSGLQ-RWSR-WVEWTGHSRFIRVMP----------N 130 (276)
Q Consensus 65 ~~~~~~~aDvI~lav~~~~~~~vl~~~~~~~~~~~~~--~l~~~~g~~-~~~~-l~~~l~~~~vv~~~p----------~ 130 (276)
.+++..+-|.+|+|||.++..+|+.++....+..-+. ++++.=|.. -++. +.+.-++..++.+-. .
T Consensus 77 ~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~ 156 (429)
T PF10100_consen 77 YEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSDGE 156 (429)
T ss_pred HHHhcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceeccCC
Confidence 5667778899999999999999999883111111111 224432220 1122 222212344554321 1
Q ss_pred ccccc-cCcc--eEeecCCCCCHHHHHHHHHHhhhcCce-EEc
Q 023866 131 TPSAV-GEAA--TVMSLGGTATEEDGELIGKLFGSVGKI-WRA 169 (276)
Q Consensus 131 ~~~~~-~~g~--~~i~~~~~~~~~~~~~v~~ll~~~G~~-~~~ 169 (276)
.|..+ -.|+ .++.++...+.....++..+|+.+|-. ..+
T Consensus 157 ~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~ 199 (429)
T PF10100_consen 157 QPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVM 199 (429)
T ss_pred CcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEe
Confidence 11111 0111 123334455667789999999999965 444
No 282
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.84 E-value=0.012 Score=48.43 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=54.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH-HHHHHHHc-Cceecc-C-chhhhcCCCEEEEeeCccc
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESI-GVKVLS-D-NNAVVEYSDVVVFSVKPQV 83 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~-~~~~l~~~-g~~~~~-~-~~~~~~~aDvI~lav~~~~ 83 (276)
.+.++|.|||.|.+|..-++.|++.|. +|+++ +.+.. ..+.+.+. .+.... + ..+.+..+|+||.|+....
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga----~VtVv-sp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~ 81 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA----QLRVI-AEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEE 81 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC----EEEEE-cCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHH
Confidence 356799999999999999999999998 99999 77653 34455554 343311 1 1344688999999987764
Q ss_pred HH-HHHH
Q 023866 84 DK-AAVI 89 (276)
Q Consensus 84 ~~-~vl~ 89 (276)
+. .+..
T Consensus 82 ln~~i~~ 88 (205)
T TIGR01470 82 LNRRVAH 88 (205)
T ss_pred HHHHHHH
Confidence 43 3433
No 283
>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases. ; PDB: 3D1L_A 2I76_A 3DFU_A.
Probab=96.79 E-value=0.015 Score=44.24 Aligned_cols=105 Identities=17% Similarity=0.138 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHhhhcCce-EEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc
Q 023866 149 TEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKS 227 (276)
Q Consensus 149 ~~~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~ 227 (276)
+++..+.++.+++.+|.. +.+++++-..+.+-......|+..+...-.+...+.|+|.+++.+++.+.+.++.+.+.+.
T Consensus 9 d~~~~~~l~~l~~~lg~~~~~i~~~~r~~yHaAav~asNf~~~L~~~a~~ll~~~gi~~~~a~~~L~PLi~~t~~n~~~~ 88 (132)
T PF10728_consen 9 DEEALEVLQELAKELGGRPFEIDSEQRALYHAAAVFASNFLVALYALAAELLEQAGIDFEEALEALLPLIRETLENILQL 88 (132)
T ss_dssp SHHHHHHHHHHHHHTTSEEEE--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHH--HHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhCCceEEeCHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhc
Confidence 788999999999999975 7888876555444322223444444444445567899999999999999999999998763
Q ss_pred CCChHHHHHhcCCCC-chHHHHHHHHHh
Q 023866 228 GKHPGQLKDDVASPG-GTTIAGIHELEK 254 (276)
Q Consensus 228 ~~~~~~l~~~v~sp~-g~t~~~l~~l~~ 254 (276)
| .+..+...+.... ++..+.+..|++
T Consensus 89 g-~~~alTGP~~RgD~~Tv~kHl~~L~~ 115 (132)
T PF10728_consen 89 G-PADALTGPAARGDIGTVAKHLAALDD 115 (132)
T ss_dssp --HHHH--SCCHCTHHHHHHHHHHHCCC
T ss_pred C-chhccCCCcccCCHHHHHHHHHHHhc
Confidence 3 2244444443322 234555666654
No 284
>PRK06153 hypothetical protein; Provisional
Probab=96.79 E-value=0.0054 Score=54.68 Aligned_cols=78 Identities=23% Similarity=0.270 Sum_probs=52.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC---------------H-------HHHHHHHH----c--Ccee
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN---------------L-------KRRDAFES----I--GVKV 61 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~---------------~-------~~~~~l~~----~--g~~~ 61 (276)
..+|+|||+|..|+.++..|.+.|. .+|+++ |.+ . .|++.+++ . ++..
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GV---geI~LV-D~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~ 251 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPV---REIHLF-DGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVP 251 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCC---CEEEEE-CCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEE
Confidence 4799999999999999999999996 467776 443 0 23333322 2 2321
Q ss_pred -----ccCchhhhcCCCEEEEeeCcccHHHHHHHH
Q 023866 62 -----LSDNNAVVEYSDVVVFSVKPQVDKAAVITE 91 (276)
Q Consensus 62 -----~~~~~~~~~~aDvI~lav~~~~~~~vl~~~ 91 (276)
..++.+.+.++|+||.|+.....+.++.+.
T Consensus 252 ~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~ 286 (393)
T PRK06153 252 HPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDY 286 (393)
T ss_pred EeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHH
Confidence 112334578899999999877666666544
No 285
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=96.78 E-value=0.0032 Score=54.81 Aligned_cols=62 Identities=24% Similarity=0.370 Sum_probs=46.2
Q ss_pred EEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH----HHH------cCceeccCchhhhcCCCEEEEee
Q 023866 15 FIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES------IGVKVLSDNNAVVEYSDVVVFSV 79 (276)
Q Consensus 15 iIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~----l~~------~g~~~~~~~~~~~~~aDvI~lav 79 (276)
|||+|++|.+++..|...+.. .++.++ |+++++++- +.. ....+..+..+.+++||+||++.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~--~el~L~-Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVita 72 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIA--DEIVLI-DINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITA 72 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCC--CEEEEE-eCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECC
Confidence 699999999999999888763 479999 998765432 222 12344445567789999999986
No 286
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.78 E-value=0.012 Score=54.70 Aligned_cols=77 Identities=14% Similarity=0.166 Sum_probs=57.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee-ccC------------------------
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LSD------------------------ 64 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-~~~------------------------ 64 (276)
..|+.|+|+|.+|...+..+...|- +|+++ ++++++.+.++..|... .-+
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA----~V~v~-d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~ 238 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGA----IVRAF-DTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEM 238 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHH
Confidence 4799999999999999998888887 89999 99999988888777553 111
Q ss_pred --chhhhcCCCEEEEee-----Ccc--cHHHHHHHH
Q 023866 65 --NNAVVEYSDVVVFSV-----KPQ--VDKAAVITE 91 (276)
Q Consensus 65 --~~~~~~~aDvI~lav-----~~~--~~~~vl~~~ 91 (276)
..+.++++|+||.++ |.. ..++.++.+
T Consensus 239 ~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~M 274 (511)
T TIGR00561 239 ELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSM 274 (511)
T ss_pred HHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhC
Confidence 123457899999998 332 345555544
No 287
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=96.77 E-value=0.0035 Score=55.18 Aligned_cols=63 Identities=17% Similarity=0.261 Sum_probs=45.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEee
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV 79 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav 79 (276)
.+.++|.|||+|.||...+++|.+.|. .+|+++ +|+.+.. .+.+... ...+...++|+||.|+
T Consensus 172 l~~k~vLvIGaGem~~l~a~~L~~~g~---~~i~v~-nRt~~~~-~~~~~~~----~~~~~~~~~DvVIs~t 234 (338)
T PRK00676 172 SKKASLLFIGYSEINRKVAYYLQRQGY---SRITFC-SRQQLTL-PYRTVVR----EELSFQDPYDVIFFGS 234 (338)
T ss_pred ccCCEEEEEcccHHHHHHHHHHHHcCC---CEEEEE-cCCcccc-chhhhhh----hhhhcccCCCEEEEcC
Confidence 356899999999999999999999986 379999 9997531 1111100 1112346889999974
No 288
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=96.77 E-value=0.0024 Score=51.21 Aligned_cols=72 Identities=19% Similarity=0.243 Sum_probs=47.8
Q ss_pred eEEEEcccHHHHH--HHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH--------cC----ceeccCchhhhcCCCEEEE
Q 023866 12 ILGFIGAGKMAES--IAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------IG----VKVLSDNNAVVEYSDVVVF 77 (276)
Q Consensus 12 kIgiIG~G~mG~~--la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~aDvI~l 77 (276)
||+|||+|..-.+ +..-+.....++..+|.++ |++++|++.... .| +..++|..+++++||.||.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~-Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~ 79 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLM-DIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVIN 79 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE--SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEE-cCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEE
Confidence 7999999986655 3333444444455688899 999999874332 23 3457888999999999999
Q ss_pred eeCcccH
Q 023866 78 SVKPQVD 84 (276)
Q Consensus 78 av~~~~~ 84 (276)
++...-.
T Consensus 80 ~irvGg~ 86 (183)
T PF02056_consen 80 QIRVGGL 86 (183)
T ss_dssp ---TTHH
T ss_pred Eeeecch
Confidence 9976543
No 289
>PLN00106 malate dehydrogenase
Probab=96.75 E-value=0.0028 Score=55.66 Aligned_cols=67 Identities=10% Similarity=0.181 Sum_probs=46.5
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHH--HHHHH--cCceec-----cCchhhhcCCCEEEEee
Q 023866 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR--DAFES--IGVKVL-----SDNNAVVEYSDVVVFSV 79 (276)
Q Consensus 10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~--~~l~~--~g~~~~-----~~~~~~~~~aDvI~lav 79 (276)
..||+|||+ |++|+.++..|...++. .++.++ |+++... .++.+ ....+. ++..+.+++||+||++.
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~--~el~L~-Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitA 94 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLV--SELHLY-DIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPA 94 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCC--CEEEEE-ecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeC
Confidence 369999999 99999999999876653 378999 9876221 12222 111221 22357789999999986
No 290
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.71 E-value=0.0063 Score=56.96 Aligned_cols=68 Identities=19% Similarity=0.308 Sum_probs=50.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH--HHHHHHHc--Cceecc--CchhhhcCCCEEEEe--eC
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFESI--GVKVLS--DNNAVVEYSDVVVFS--VK 80 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~--~~~~l~~~--g~~~~~--~~~~~~~~aDvI~la--v~ 80 (276)
+.++|.|||.|..|.++|+.|.+.|+ +|+++ |.+.. ..+.+.+. |+.+.. ...+.+.++|+||.+ +|
T Consensus 6 ~~~~i~v~G~G~sG~s~a~~L~~~G~----~v~~~-D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~ 80 (498)
T PRK02006 6 QGPMVLVLGLGESGLAMARWCARHGA----RLRVA-DTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLS 80 (498)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHCCC----EEEEE-cCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCC
Confidence 45789999999999999999999999 99999 86542 33456554 544322 234556789999997 45
Q ss_pred c
Q 023866 81 P 81 (276)
Q Consensus 81 ~ 81 (276)
+
T Consensus 81 ~ 81 (498)
T PRK02006 81 P 81 (498)
T ss_pred C
Confidence 5
No 291
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.70 E-value=0.0077 Score=55.48 Aligned_cols=66 Identities=18% Similarity=0.180 Sum_probs=49.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH----HHHHHHHcCceec--cCchhhhcC-CCEEEEee
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK----RRDAFESIGVKVL--SDNNAVVEY-SDVVVFSV 79 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~----~~~~l~~~g~~~~--~~~~~~~~~-aDvI~lav 79 (276)
+.++|.|+|.|.+|.++++.|.+.|+ +|+++ |++.. ..+.+.+.|+.+. .+..+...+ +|+||.+.
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~G~----~V~~~-d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~ 76 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKLGA----NVTVN-DGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNP 76 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCC----EEEEE-cCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECC
Confidence 45789999999999999999999999 99999 87642 2345556677653 234444444 89998864
No 292
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.70 E-value=0.0083 Score=48.98 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=29.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (276)
..||.|||+|.+|+.++++|..+|. .+++++ |.+
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GV---g~i~lv-D~d 54 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGI---GSLTIL-DDR 54 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCC---CEEEEE-ECC
Confidence 5789999999999999999999997 467787 544
No 293
>PRK05086 malate dehydrogenase; Provisional
Probab=96.70 E-value=0.0034 Score=55.06 Aligned_cols=66 Identities=20% Similarity=0.224 Sum_probs=44.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHh-CCCCCCCeEEEEeCCCHHHH---HHHHHcC--cee----ccCchhhhcCCCEEEEee
Q 023866 11 FILGFIGA-GKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRR---DAFESIG--VKV----LSDNNAVVEYSDVVVFSV 79 (276)
Q Consensus 11 ~kIgiIG~-G~mG~~la~~l~~-~g~~~~~~V~v~~~r~~~~~---~~l~~~g--~~~----~~~~~~~~~~aDvI~lav 79 (276)
|||+|||+ |.+|.+++..|.. .+. ..++.++ +|++... -.+.+.+ ..+ .++..+.++++|+||+|.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~--~~el~L~-d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIita 77 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPA--GSELSLY-DIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISA 77 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCC--ccEEEEE-ecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcC
Confidence 79999999 9999999987744 222 1378888 8875431 1232212 222 234356788999999997
No 294
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.70 E-value=0.0038 Score=55.27 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=52.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcC--ceeccCchhhhcCCCEEEEeeCcccHHH
Q 023866 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG--VKVLSDNNAVVEYSDVVVFSVKPQVDKA 86 (276)
Q Consensus 10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g--~~~~~~~~~~~~~aDvI~lav~~~~~~~ 86 (276)
++||+|||+ |..|..+++.|.+.+| +..++... .++.+.-+.+.-.+ +.+.+.......++|+||+|++.....+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~h-p~~~l~~l-~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s~~ 78 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNF-PVDKLRLL-ASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVSKK 78 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-CcceEEEE-EccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHHHH
Confidence 479999988 9999999999988777 43455655 44433323232122 2222212233478999999999888888
Q ss_pred HHHHH
Q 023866 87 AVITE 91 (276)
Q Consensus 87 vl~~~ 91 (276)
+...+
T Consensus 79 ~~~~~ 83 (334)
T PRK14874 79 YAPKA 83 (334)
T ss_pred HHHHH
Confidence 77766
No 295
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.68 E-value=0.003 Score=55.58 Aligned_cols=68 Identities=16% Similarity=0.210 Sum_probs=48.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCC---CCeEEEEeCCCH--HHHHH----HHH------cCceeccCchhhhcCCCE
Q 023866 11 FILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNL--KRRDA----FES------IGVKVLSDNNAVVEYSDV 74 (276)
Q Consensus 11 ~kIgiIG~-G~mG~~la~~l~~~g~~~---~~~V~v~~~r~~--~~~~~----l~~------~g~~~~~~~~~~~~~aDv 74 (276)
.||+|||+ |++|+.++..|...+... ..++.++ |+++ ++++- +.+ .+..+..+..+.+++||+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~-Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDi 79 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLL-DIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDV 79 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEE-ecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCE
Confidence 48999999 999999999998877532 1258888 9987 54321 111 123344456678899999
Q ss_pred EEEee
Q 023866 75 VVFSV 79 (276)
Q Consensus 75 I~lav 79 (276)
||++-
T Consensus 80 VVitA 84 (323)
T cd00704 80 AILVG 84 (323)
T ss_pred EEEeC
Confidence 99975
No 296
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=96.66 E-value=0.0036 Score=46.43 Aligned_cols=82 Identities=11% Similarity=0.126 Sum_probs=49.7
Q ss_pred cccHHHHHHHHHHHhC----CCCCCCeEEEEeCCC--HHHHHHHHHcCceeccCchhhhc--CCCEEEEeeCcccHHHHH
Q 023866 17 GAGKMAESIAKGVAKS----GVLPPDRICTAVHSN--LKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSVKPQVDKAAV 88 (276)
Q Consensus 17 G~G~mG~~la~~l~~~----g~~~~~~V~v~~~r~--~~~~~~l~~~g~~~~~~~~~~~~--~aDvI~lav~~~~~~~vl 88 (276)
|+|+||+.+++.|.+. ++ +|..+++|+ ..........+.....+..+++. ..|+||=|+.++.+.+.+
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~----~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~ 76 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDL----EVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVAEYY 76 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEE----EEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCE----EEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHHHHH
Confidence 8999999999999876 34 555333887 11111111134455677888877 899999998888887777
Q ss_pred HHHhhccccccCCcccCC
Q 023866 89 ITEEAFGFCCCRSEIERP 106 (276)
Q Consensus 89 ~~~~~~~~~~~~~~l~~~ 106 (276)
....+.| ..++..+
T Consensus 77 ~~~L~~G----~~VVt~n 90 (117)
T PF03447_consen 77 EKALERG----KHVVTAN 90 (117)
T ss_dssp HHHHHTT----CEEEES-
T ss_pred HHHHHCC----CeEEEEC
Confidence 6663322 4555543
No 297
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.63 E-value=0.0035 Score=55.29 Aligned_cols=68 Identities=19% Similarity=0.198 Sum_probs=46.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCC---CCeEEEEeCCCHH--HHHH----HHH------cCceeccCchhhhcCCCE
Q 023866 11 FILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNLK--RRDA----FES------IGVKVLSDNNAVVEYSDV 74 (276)
Q Consensus 11 ~kIgiIG~-G~mG~~la~~l~~~g~~~---~~~V~v~~~r~~~--~~~~----l~~------~g~~~~~~~~~~~~~aDv 74 (276)
.||+|+|+ |.+|+.++..|...+... ..+|.++ |+++. +++. +.+ ..+....+..+.+++||+
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~-D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDi 81 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLL-DIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDV 81 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEE-EcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCE
Confidence 68999999 999999999998866531 2479998 88553 2221 111 112233444577899999
Q ss_pred EEEee
Q 023866 75 VVFSV 79 (276)
Q Consensus 75 I~lav 79 (276)
||++-
T Consensus 82 VI~tA 86 (325)
T cd01336 82 AILVG 86 (325)
T ss_pred EEEeC
Confidence 99975
No 298
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.61 E-value=0.0071 Score=54.44 Aligned_cols=79 Identities=16% Similarity=0.125 Sum_probs=51.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcC-----cee--ccCch-hhhcCCCEEEEee
Q 023866 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG-----VKV--LSDNN-AVVEYSDVVVFSV 79 (276)
Q Consensus 9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g-----~~~--~~~~~-~~~~~aDvI~lav 79 (276)
+++||+|+|+ |..|..+.+.|.+.. ..+|... .++.+.-+.+.... ... ..+.+ +.++++|+||+|+
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP---~~el~~l-~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Al 112 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHP---DFEITVM-TADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCL 112 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCC---CCeEEEE-EChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcC
Confidence 5679999998 999999999887762 2388877 55444332222211 111 11111 2247899999999
Q ss_pred CcccHHHHHHHH
Q 023866 80 KPQVDKAAVITE 91 (276)
Q Consensus 80 ~~~~~~~vl~~~ 91 (276)
|.....++...+
T Consensus 113 p~~~s~~i~~~~ 124 (381)
T PLN02968 113 PHGTTQEIIKAL 124 (381)
T ss_pred CHHHHHHHHHHH
Confidence 998877887766
No 299
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.59 E-value=0.011 Score=53.37 Aligned_cols=78 Identities=21% Similarity=0.182 Sum_probs=51.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC-------------------HHHHHHHHH------cCceec-
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN-------------------LKRRDAFES------IGVKVL- 62 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~-------------------~~~~~~l~~------~g~~~~- 62 (276)
...||.|||+|.+|+.++..|...|. .+++++ |++ ..|++.+++ ..+.+.
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gv---g~i~lv-D~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~ 209 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGV---GTLGIV-DHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEA 209 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCC---CeEEEE-eCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEE
Confidence 35789999999999999999999997 478888 776 234443332 223221
Q ss_pred -c------CchhhhcCCCEEEEeeCcccHHHHHHH
Q 023866 63 -S------DNNAVVEYSDVVVFSVKPQVDKAAVIT 90 (276)
Q Consensus 63 -~------~~~~~~~~aDvI~lav~~~~~~~vl~~ 90 (276)
. +..+.++++|+||-|+.....+..+.+
T Consensus 210 ~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~ 244 (376)
T PRK08762 210 VQERVTSDNVEALLQDVDVVVDGADNFPTRYLLND 244 (376)
T ss_pred EeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHH
Confidence 1 123456789999999865544444433
No 300
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=96.58 E-value=0.0081 Score=55.44 Aligned_cols=63 Identities=22% Similarity=0.387 Sum_probs=48.5
Q ss_pred eEEEEcccHHHHH-HHHHHHhCCCCCCCeEEEEeCCCHH-HHHHHHHcCceecc-CchhhhcCCCEEEEee
Q 023866 12 ILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESIGVKVLS-DNNAVVEYSDVVVFSV 79 (276)
Q Consensus 12 kIgiIG~G~mG~~-la~~l~~~g~~~~~~V~v~~~r~~~-~~~~l~~~g~~~~~-~~~~~~~~aDvI~lav 79 (276)
+|.|||.|..|.+ +|+.|.+.|+ +|+++ |++.. ..+.|++.|+.+.. ...+.+.++|+||.+-
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~----~v~~~-D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~sp 66 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGY----QVSGS-DIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSA 66 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCC----eEEEE-CCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECC
Confidence 5889999999998 9999999999 99999 86543 34556667877642 2334567899999863
No 301
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.57 E-value=0.0098 Score=57.41 Aligned_cols=67 Identities=24% Similarity=0.325 Sum_probs=51.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH---------------------HHHHHHHcCceecc----
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVLS---- 63 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~---------------------~~~~l~~~g~~~~~---- 63 (276)
..+||.|||.|..|.+.|..|.+.|+ +|+++ ++.+. ..+.+.+.|+.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~----~Vtv~-e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v 383 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV----QVDVF-DRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEI 383 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC----cEEEE-eCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCcc
Confidence 46899999999999999999999999 99999 87752 34455567765421
Q ss_pred ----CchhhhcCCCEEEEeeC
Q 023866 64 ----DNNAVVEYSDVVVFSVK 80 (276)
Q Consensus 64 ----~~~~~~~~aDvI~lav~ 80 (276)
+..+.....|.||+++-
T Consensus 384 ~~~~~~~~l~~~~DaV~latG 404 (639)
T PRK12809 384 GRDITFSDLTSEYDAVFIGVG 404 (639)
T ss_pred CCcCCHHHHHhcCCEEEEeCC
Confidence 12244567999999984
No 302
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.56 E-value=0.013 Score=52.38 Aligned_cols=77 Identities=19% Similarity=0.180 Sum_probs=51.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-------------------HHHH----HHHH--cCceec--
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRD----AFES--IGVKVL-- 62 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~~----~l~~--~g~~~~-- 62 (276)
..||.|||+|.+|+.++..|...|. .+++++ |.+. .|++ .+++ ..+.+.
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gv---g~i~lv-D~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~ 103 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGV---GHITII-DDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVS 103 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---CeEEEE-eCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEE
Confidence 5799999999999999999999997 467777 6543 1222 2323 223221
Q ss_pred ------cCchhhhcCCCEEEEeeCcccHHHHHHH
Q 023866 63 ------SDNNAVVEYSDVVVFSVKPQVDKAAVIT 90 (276)
Q Consensus 63 ------~~~~~~~~~aDvI~lav~~~~~~~vl~~ 90 (276)
.+..+.++++|+||.|+.....+.++..
T Consensus 104 ~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~ 137 (355)
T PRK05597 104 VRRLTWSNALDELRDADVILDGSDNFDTRHLASW 137 (355)
T ss_pred EeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHH
Confidence 1124567899999999876555544443
No 303
>PRK06270 homoserine dehydrogenase; Provisional
Probab=96.56 E-value=0.013 Score=51.96 Aligned_cols=70 Identities=21% Similarity=0.271 Sum_probs=44.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC--------CCCCCCeEE-EEeCCC----------HHHHHHHHH-cCc-e------ec
Q 023866 10 SFILGFIGAGKMAESIAKGVAKS--------GVLPPDRIC-TAVHSN----------LKRRDAFES-IGV-K------VL 62 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~--------g~~~~~~V~-v~~~r~----------~~~~~~l~~-~g~-~------~~ 62 (276)
.+||+++|+|+||+.+++.|.+. |. .-+|. ++ |++ .+++..+.+ .+. . ..
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~--~~~vvai~-d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~ 78 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGL--DLKVVAIA-DSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGE 78 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCC--CEEEEEEE-eCCCcccCcCCCCHHHHHHHHhccCCcccCcccccc
Confidence 36899999999999999988754 21 01544 44 753 344433333 231 1 12
Q ss_pred cCchhhhc--CCCEEEEeeCcc
Q 023866 63 SDNNAVVE--YSDVVVFSVKPQ 82 (276)
Q Consensus 63 ~~~~~~~~--~aDvI~lav~~~ 82 (276)
.+..+++. +.|+|+.|+|+.
T Consensus 79 ~d~~ell~~~~~DvVvd~T~s~ 100 (341)
T PRK06270 79 ISGLEVIRSVDADVVVEATPTN 100 (341)
T ss_pred CCHHHHhhccCCCEEEECCcCc
Confidence 35566663 689999999864
No 304
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.55 E-value=0.0086 Score=53.39 Aligned_cols=79 Identities=13% Similarity=0.201 Sum_probs=50.5
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH-HHHH--------------cCceeccCchhhhcCC
Q 023866 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD-AFES--------------IGVKVLSDNNAVVEYS 72 (276)
Q Consensus 9 ~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~-~l~~--------------~g~~~~~~~~~~~~~a 72 (276)
.++||+|+| .|.+|..+++.|.+... -++..+ .+++++.. .+.. ..+.+.....+...++
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~---~el~~~-~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 77 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPW---FEVTAL-AASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAVDDV 77 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCC---ceEEEE-EcChhhcCCcccccccccccccccccccceEEEeCCHHHhcCC
Confidence 358999998 79999999998876432 366665 45543321 1111 0112222233445789
Q ss_pred CEEEEeeCcccHHHHHHHH
Q 023866 73 DVVVFSVKPQVDKAAVITE 91 (276)
Q Consensus 73 DvI~lav~~~~~~~vl~~~ 91 (276)
|+||+|+|.....++.+.+
T Consensus 78 DvVf~a~p~~~s~~~~~~~ 96 (349)
T PRK08664 78 DIVFSALPSDVAGEVEEEF 96 (349)
T ss_pred CEEEEeCChhHHHHHHHHH
Confidence 9999999998777776655
No 305
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=96.55 E-value=0.018 Score=46.98 Aligned_cols=34 Identities=32% Similarity=0.467 Sum_probs=29.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (276)
..||.|||+|.+|+.++++|...|. .+++++ |.+
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GV---g~i~lv-D~d 52 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGI---DSITIV-DHR 52 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-ECC
Confidence 5789999999999999999999997 467777 543
No 306
>PRK08328 hypothetical protein; Provisional
Probab=96.54 E-value=0.017 Score=48.36 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=30.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (276)
..||.|||+|.+|+.++..|...|. .+++++ |.+.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gv---g~i~lv-D~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGV---GRILLI-DEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cCCc
Confidence 5789999999999999999999997 478888 7654
No 307
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=96.54 E-value=0.019 Score=42.98 Aligned_cols=88 Identities=20% Similarity=0.178 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHHHHH-------Hh
Q 023866 185 PAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHEL-------EK 254 (276)
Q Consensus 185 p~~~~~~~~~l~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~sp~g~t~~~l~~l-------~~ 254 (276)
+.+++..+.++.|+ +.+.|+|+++..+++..+..++..+-. ..|..+.+....|+++.....+++ ++
T Consensus 11 N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~---~~~~~~~~~~~~~~f~l~~~~KDl~l~~~~a~~ 87 (122)
T PF14833_consen 11 NLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKN---RAPRMILNGDFDPGFSLDLARKDLRLALDLAKE 87 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHH---HHHHHHHTTTTCSSSBHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHh---hhhhhhhcccCCccchhHhhccHHHHHHHHHHH
Confidence 33445556666665 579999999999999988777755533 235557777778998888887765 45
Q ss_pred CChHHHHHHHHHHHHHHHhhc
Q 023866 255 SGFRGILMNAVVAAAKRSREL 275 (276)
Q Consensus 255 ~~~~~~~~~a~~~~~~r~~~~ 275 (276)
.+++-.+.+++.+.|+++.+.
T Consensus 88 ~g~~~p~~~~~~~~~~~a~~~ 108 (122)
T PF14833_consen 88 AGVPLPLGSAARQLYQAAKAQ 108 (122)
T ss_dssp TT---HHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHHhc
Confidence 699999999999999988763
No 308
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=96.53 E-value=0.011 Score=54.11 Aligned_cols=71 Identities=18% Similarity=0.287 Sum_probs=53.1
Q ss_pred CeEEEEcccHH-HHHHHHHHHhCC-CCCCCeEEEEeCCCHHHHHHHHH--------cC----ceeccCchhhhcCCCEEE
Q 023866 11 FILGFIGAGKM-AESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFES--------IG----VKVLSDNNAVVEYSDVVV 76 (276)
Q Consensus 11 ~kIgiIG~G~m-G~~la~~l~~~g-~~~~~~V~v~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~aDvI~ 76 (276)
|||+|||+|.. ...+...|++.. -++..+|+++ |.++++++.... .| +..++|..+++++||.||
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~-Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfVi 79 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLY-DIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVI 79 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEE-cCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEE
Confidence 69999999983 335667776655 2566789999 999988765322 33 345688899999999999
Q ss_pred EeeCcc
Q 023866 77 FSVKPQ 82 (276)
Q Consensus 77 lav~~~ 82 (276)
..+...
T Consensus 80 ~~irvG 85 (425)
T cd05197 80 NQFRVG 85 (425)
T ss_pred EeeecC
Confidence 999654
No 309
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.50 E-value=0.024 Score=46.71 Aligned_cols=85 Identities=15% Similarity=0.191 Sum_probs=59.5
Q ss_pred CCCCCCC--CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-HHHHHHHH-cCceec---cCchhhhcCCC
Q 023866 1 MDAFPIP--AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFES-IGVKVL---SDNNAVVEYSD 73 (276)
Q Consensus 1 ~~~~~~~--~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~-~g~~~~---~~~~~~~~~aD 73 (276)
|...|.. .+.++|.|||.|..|..=++.|++.|- +|+++ ..+. +....+.+ .++... -+..+ ...++
T Consensus 1 ~~~lPl~~~l~~k~VlvvGgG~va~rKa~~ll~~ga----~v~Vv-s~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~ 74 (210)
T COG1648 1 MNYLPLFLDLEGKKVLVVGGGSVALRKARLLLKAGA----DVTVV-SPEFEPELKALIEEGKIKWIEREFDAED-LDDAF 74 (210)
T ss_pred CCccceEEEcCCCEEEEECCCHHHHHHHHHHHhcCC----EEEEE-cCCccHHHHHHHHhcCcchhhcccChhh-hcCce
Confidence 4556655 467899999999999999999999998 99999 6554 44444444 333321 12333 44599
Q ss_pred EEEEeeCcccHHHHHHHH
Q 023866 74 VVVFSVKPQVDKAAVITE 91 (276)
Q Consensus 74 vI~lav~~~~~~~vl~~~ 91 (276)
+||.|+.+..+.+-+.+.
T Consensus 75 lviaAt~d~~ln~~i~~~ 92 (210)
T COG1648 75 LVIAATDDEELNERIAKA 92 (210)
T ss_pred EEEEeCCCHHHHHHHHHH
Confidence 999999987765554443
No 310
>PLN02775 Probable dihydrodipicolinate reductase
Probab=96.49 E-value=0.031 Score=47.98 Aligned_cols=110 Identities=17% Similarity=0.234 Sum_probs=73.2
Q ss_pred CCCCCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH---HHHHcCceec--cCchhhh-----c
Q 023866 2 DAFPIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD---AFESIGVKVL--SDNNAVV-----E 70 (276)
Q Consensus 2 ~~~~~~~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~---~l~~~g~~~~--~~~~~~~-----~ 70 (276)
++.|.+...+||.+.|+ |+||+..++.+.+.++ ++...+++.+.-.+ .+...++.+. ++.++++ +
T Consensus 3 ~~~~~~~~~i~V~V~Ga~G~MG~~~~~av~~~~~----~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~ 78 (286)
T PLN02775 3 STASPPGSAIPIMVNGCTGKMGHAVAEAAVSAGL----QLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAE 78 (286)
T ss_pred CcCCCcCCCCeEEEECCCChHHHHHHHHHhcCCC----EEEEEeccccccccccceeccceeeeecCccHHHHHHHhhcc
Confidence 34555555689999998 9999999999988777 77654466553211 1222255555 6666665 2
Q ss_pred CCC-EEEEeeCcccHHHHHHHHhhccccccCCcccCCCCcccHHHHHHHcC
Q 023866 71 YSD-VVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG 120 (276)
Q Consensus 71 ~aD-vI~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~ 120 (276)
.+| |+|=-+.|+.+.+.+....+.| .+.+....|. +.++++++..
T Consensus 79 ~~~~VvIDFT~P~a~~~~~~~~~~~g----~~~VvGTTG~-~~e~l~~~~~ 124 (286)
T PLN02775 79 YPNLIVVDYTLPDAVNDNAELYCKNG----LPFVMGTTGG-DRDRLLKDVE 124 (286)
T ss_pred CCCEEEEECCChHHHHHHHHHHHHCC----CCEEEECCCC-CHHHHHHHHh
Confidence 488 6666778888777776553333 5666666888 8877776543
No 311
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.49 E-value=0.0049 Score=52.99 Aligned_cols=56 Identities=20% Similarity=0.226 Sum_probs=46.0
Q ss_pred CCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866 7 PAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP 81 (276)
Q Consensus 7 ~~~~~kIgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~ 81 (276)
..+.+++.|||.|. +|..++..|.+.|. .|+++ +++. .+..+.+++||+||.++..
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~ga----tVtv~-~s~t--------------~~l~~~~~~ADIVIsAvg~ 211 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNA----SVTIL-HSRS--------------KDMASYLKDADVIVSAVGK 211 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCC----eEEEE-eCCc--------------hhHHHHHhhCCEEEECCCC
Confidence 34678999999988 99999999998887 99998 6642 2345678999999999964
No 312
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=96.48 E-value=0.0048 Score=53.98 Aligned_cols=65 Identities=12% Similarity=0.161 Sum_probs=45.4
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHH--HHHHH--cCceec---cC--chhhhcCCCEEEEee
Q 023866 12 ILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR--DAFES--IGVKVL---SD--NNAVVEYSDVVVFSV 79 (276)
Q Consensus 12 kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~--~~l~~--~g~~~~---~~--~~~~~~~aDvI~lav 79 (276)
||+|||+ |++|++++..|...++. .++.++ |+++... ..+.+ ....+. .+ ..+.+++||+||++.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~--~elvL~-Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvita 75 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYV--SELSLY-DIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPA 75 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCC--cEEEEe-cCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeC
Confidence 7999999 99999999998877753 478898 9876221 12222 112222 12 257789999999987
No 313
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.44 E-value=0.012 Score=56.88 Aligned_cols=68 Identities=24% Similarity=0.358 Sum_probs=50.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH---------------------HHHHHHHcCceecc---
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVLS--- 63 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~---------------------~~~~l~~~g~~~~~--- 63 (276)
...++|.|||+|..|.+.|..|.+.|+ +|+++ ++.+. ..+.+++.|+.+..
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~----~V~V~-E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~ 399 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGV----AVTVY-DRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCE 399 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC----eEEEE-ecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCE
Confidence 356799999999999999999999999 99999 87642 23445556765421
Q ss_pred -----CchhhhcCCCEEEEeeC
Q 023866 64 -----DNNAVVEYSDVVVFSVK 80 (276)
Q Consensus 64 -----~~~~~~~~aDvI~lav~ 80 (276)
+..+.....|.||+++-
T Consensus 400 v~~~i~~~~~~~~~DavilAtG 421 (654)
T PRK12769 400 VGKDISLESLLEDYDAVFVGVG 421 (654)
T ss_pred eCCcCCHHHHHhcCCEEEEeCC
Confidence 12233457999999983
No 314
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.43 E-value=0.0068 Score=48.14 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=39.5
Q ss_pred CCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcC
Q 023866 5 PIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG 58 (276)
Q Consensus 5 ~~~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g 58 (276)
|......||.|+|.|+.|..-+..+...|. +++++ +.++++.+++...+
T Consensus 15 ~~~~~p~~vvv~G~G~vg~gA~~~~~~lGa----~v~~~-d~~~~~~~~~~~~~ 63 (168)
T PF01262_consen 15 PGGVPPAKVVVTGAGRVGQGAAEIAKGLGA----EVVVP-DERPERLRQLESLG 63 (168)
T ss_dssp TTEE-T-EEEEESTSHHHHHHHHHHHHTT-----EEEEE-ESSHHHHHHHHHTT
T ss_pred CCCCCCeEEEEECCCHHHHHHHHHHhHCCC----EEEec-cCCHHHHHhhhccc
Confidence 333456899999999999999999999998 99999 99999888877644
No 315
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=96.41 E-value=0.019 Score=51.54 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=52.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-------------------HHHHH----HHH--cCcee--c
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRDA----FES--IGVKV--L 62 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~~~----l~~--~g~~~--~ 62 (276)
..+|.|||+|.+|+.++..|...|. .+++++ |.+. .|++. +.+ ..+.+ .
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gv---g~i~iv-D~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 116 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGV---GTITLI-DDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNAL 116 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-eCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEe
Confidence 5789999999999999999999996 467777 6541 12222 222 12221 1
Q ss_pred ------cCchhhhcCCCEEEEeeCcccHHHHHHHH
Q 023866 63 ------SDNNAVVEYSDVVVFSVKPQVDKAAVITE 91 (276)
Q Consensus 63 ------~~~~~~~~~aDvI~lav~~~~~~~vl~~~ 91 (276)
.+..+.++++|+||-|+.....+-.+.++
T Consensus 117 ~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~ 151 (370)
T PRK05600 117 RERLTAENAVELLNGVDLVLDGSDSFATKFLVADA 151 (370)
T ss_pred eeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHH
Confidence 12235678999999999776666555544
No 316
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.40 E-value=0.0089 Score=50.36 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=29.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (276)
..||.|+|+|.+|+.++..|...|. .+++++ |.+
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gv---g~i~lv-D~D 57 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGV---GNLTLL-DFD 57 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCC---CEEEEE-eCC
Confidence 5789999999999999999999996 467776 554
No 317
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=96.37 E-value=0.0076 Score=53.08 Aligned_cols=67 Identities=15% Similarity=0.121 Sum_probs=45.6
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCCCC--CC-eEEEEeCCCHHH--HHH----HHH------cCceeccCchhhhcCCCEE
Q 023866 12 ILGFIGA-GKMAESIAKGVAKSGVLP--PD-RICTAVHSNLKR--RDA----FES------IGVKVLSDNNAVVEYSDVV 75 (276)
Q Consensus 12 kIgiIG~-G~mG~~la~~l~~~g~~~--~~-~V~v~~~r~~~~--~~~----l~~------~g~~~~~~~~~~~~~aDvI 75 (276)
||+|||+ |++|+.++..|...+.+. .+ ++.++ |+++.. ++- +.+ ..+....+..+.+++||+|
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~Li-D~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiV 79 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLL-DIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVA 79 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEE-ecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEE
Confidence 6999999 999999999999877642 22 68899 985442 211 111 1122222445778999999
Q ss_pred EEee
Q 023866 76 VFSV 79 (276)
Q Consensus 76 ~lav 79 (276)
|++-
T Consensus 80 VitA 83 (324)
T TIGR01758 80 ILVG 83 (324)
T ss_pred EEcC
Confidence 9976
No 318
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.35 E-value=0.0084 Score=50.11 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=28.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCC
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS 46 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r 46 (276)
...||.|||+|.+|+.++..|.+.|. .+++++ |.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gv---g~i~lv-D~ 53 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGV---GKLGLV-DD 53 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cC
Confidence 35799999999999999999999997 366666 44
No 319
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.34 E-value=0.016 Score=57.57 Aligned_cols=66 Identities=23% Similarity=0.348 Sum_probs=51.0
Q ss_pred CCCCeEEEEcccHHHHHH-HHHHHhCCCCCCCeEEEEeCCCH-HHHHHHHHcCceec-cCchhhhcCCCEEEEe
Q 023866 8 AESFILGFIGAGKMAESI-AKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIGVKVL-SDNNAVVEYSDVVVFS 78 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~l-a~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~g~~~~-~~~~~~~~~aDvI~la 78 (276)
|.+++|.|||+|..|.+. |+.|.+.|+ +|+++ |.++ ...+.|.+.|+.+. ....+.+.++|+||.+
T Consensus 2 ~~~~~i~viG~G~sG~salA~~L~~~G~----~V~~s-D~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~S 70 (809)
T PRK14573 2 MKSLFYHFIGIGGIGMSALAHILLDRGY----SVSGS-DLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYS 70 (809)
T ss_pred CCcceEEEEEecHHhHHHHHHHHHHCCC----eEEEE-CCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEEC
Confidence 456679999999999997 999999999 99999 8654 33455767788753 2334556789999986
No 320
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=96.32 E-value=0.017 Score=52.92 Aligned_cols=71 Identities=14% Similarity=0.200 Sum_probs=52.0
Q ss_pred CeEEEEcccHH-HHHHHHHHHhCC-CCCCCeEEEEeCCCHHHHHHHHH--------cC----ceeccCchhhhcCCCEEE
Q 023866 11 FILGFIGAGKM-AESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFES--------IG----VKVLSDNNAVVEYSDVVV 76 (276)
Q Consensus 11 ~kIgiIG~G~m-G~~la~~l~~~g-~~~~~~V~v~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~aDvI~ 76 (276)
|||+|||+|.. +..+...|++.. .++..+|+++ |.++++++.... .| +..++|..+++++||.||
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~-DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi 79 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLY-DIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVF 79 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEE-CCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEEE
Confidence 79999999985 223556666552 2455789999 999988765332 23 345678899999999999
Q ss_pred EeeCcc
Q 023866 77 FSVKPQ 82 (276)
Q Consensus 77 lav~~~ 82 (276)
.++...
T Consensus 80 ~~irvG 85 (437)
T cd05298 80 AQIRVG 85 (437)
T ss_pred EEeeeC
Confidence 998654
No 321
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=96.32 E-value=0.013 Score=55.07 Aligned_cols=44 Identities=23% Similarity=0.417 Sum_probs=39.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (276)
.+.+++.|+|+|.+|.+++..|.+.|. +|+++ +|+.++.+.+.+
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~----~V~i~-nR~~e~a~~la~ 420 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA----RVVIA-NRTYERAKELAD 420 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHH
Confidence 345789999999999999999999998 99999 999999888765
No 322
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.27 E-value=0.012 Score=51.51 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=49.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----cCc---eec-cCchhh-hcCCCEEEE
Q 023866 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGV---KVL-SDNNAV-VEYSDVVVF 77 (276)
Q Consensus 9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g~---~~~-~~~~~~-~~~aDvI~l 77 (276)
.++||+|||+ |--|.-|.+.|...-. -++..+ ..+..+-+.+.+ .|. ... -++.++ .++||+||+
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~---ve~~~~-ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFl 76 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPD---VELILI-SSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFL 76 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC---eEEEEe-echhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEE
Confidence 3689999988 9999999888765533 255555 333322223332 121 111 122332 446999999
Q ss_pred eeCcccHHHHHHHHh
Q 023866 78 SVKPQVDKAAVITEE 92 (276)
Q Consensus 78 av~~~~~~~vl~~~~ 92 (276)
|+|+..-.++..++.
T Consensus 77 alPhg~s~~~v~~l~ 91 (349)
T COG0002 77 ALPHGVSAELVPELL 91 (349)
T ss_pred ecCchhHHHHHHHHH
Confidence 999998888887773
No 323
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.27 E-value=0.012 Score=49.84 Aligned_cols=79 Identities=11% Similarity=0.163 Sum_probs=50.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-------------------HHHH----HHHH--cCceec-
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRD----AFES--IGVKVL- 62 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~~----~l~~--~g~~~~- 62 (276)
...||.|||+|.+|+.++..|...|. .+++++ |.+. .|++ .+.+ ..+.+.
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gv---g~i~lv-D~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~ 106 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGV---GTLTLV-DFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIET 106 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEE
Confidence 35799999999999999999999996 367776 5432 1222 2222 122221
Q ss_pred ------c-CchhhhcCCCEEEEeeCcccHHHHHHHH
Q 023866 63 ------S-DNNAVVEYSDVVVFSVKPQVDKAAVITE 91 (276)
Q Consensus 63 ------~-~~~~~~~~aDvI~lav~~~~~~~vl~~~ 91 (276)
. +..+.++++|+||.|+.....+..+.+.
T Consensus 107 ~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~ 142 (245)
T PRK05690 107 INARLDDDELAALIAGHDLVLDCTDNVATRNQLNRA 142 (245)
T ss_pred EeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHH
Confidence 1 1234567899999998665555544443
No 324
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=96.23 E-value=0.022 Score=51.92 Aligned_cols=70 Identities=19% Similarity=0.345 Sum_probs=50.1
Q ss_pred CeEEEEcccHHHH-HHHHHHHhC-CCCCCCeEEEEeCCC-HHHHHHHHH--------cC----ceeccCchhhhcCCCEE
Q 023866 11 FILGFIGAGKMAE-SIAKGVAKS-GVLPPDRICTAVHSN-LKRRDAFES--------IG----VKVLSDNNAVVEYSDVV 75 (276)
Q Consensus 11 ~kIgiIG~G~mG~-~la~~l~~~-g~~~~~~V~v~~~r~-~~~~~~l~~--------~g----~~~~~~~~~~~~~aDvI 75 (276)
|||+|||+|..-+ .+...|++. --++..+|+++ |.+ +++++.... .| +..++|..+++++||+|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~-Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadfV 79 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLV-DIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFV 79 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEe-cCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEE
Confidence 6999999998644 455666653 22455789999 999 888654321 23 34567889999999999
Q ss_pred EEeeCc
Q 023866 76 VFSVKP 81 (276)
Q Consensus 76 ~lav~~ 81 (276)
|.+...
T Consensus 80 i~~~~v 85 (419)
T cd05296 80 FTQIRV 85 (419)
T ss_pred EEEEee
Confidence 999843
No 325
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.21 E-value=0.029 Score=52.04 Aligned_cols=66 Identities=24% Similarity=0.389 Sum_probs=49.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH---------------------HHHHHHHcCceecc----
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVLS---- 63 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~---------------------~~~~l~~~g~~~~~---- 63 (276)
..++|.|||.|..|.+.|..|.+.|+ +|+++ ++.+. ..+.+.+.|+.+..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~----~V~i~-e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v 214 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGV----QVVVF-DRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEV 214 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC----eEEEE-ecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEe
Confidence 45789999999999999999999999 99999 87641 24456667765421
Q ss_pred ----CchhhhcCCCEEEEee
Q 023866 64 ----DNNAVVEYSDVVVFSV 79 (276)
Q Consensus 64 ----~~~~~~~~aDvI~lav 79 (276)
...+....+|.||+|+
T Consensus 215 ~~~~~~~~~~~~~D~vilAt 234 (467)
T TIGR01318 215 GRDISLDDLLEDYDAVFLGV 234 (467)
T ss_pred CCccCHHHHHhcCCEEEEEe
Confidence 1123335799999998
No 326
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.17 E-value=0.016 Score=51.28 Aligned_cols=82 Identities=15% Similarity=0.204 Sum_probs=50.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeC-CCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHH
Q 023866 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVH-SNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAA 87 (276)
Q Consensus 10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~-r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~v 87 (276)
.+||||||+ |..|.-|.+.|.+...++..++.+..+ ++.-+.-.+....+.+.....+...++|++|+|+|.....++
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~~~~~Divf~a~~~~~s~~~ 84 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEVSRQF 84 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHHhcCCCEEEECCChHHHHHH
Confidence 379999998 999999999887544444445655412 222111112112233322222335789999999998887777
Q ss_pred HHHH
Q 023866 88 VITE 91 (276)
Q Consensus 88 l~~~ 91 (276)
...+
T Consensus 85 ~~~~ 88 (347)
T PRK06728 85 VNQA 88 (347)
T ss_pred HHHH
Confidence 7765
No 327
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=96.16 E-value=0.015 Score=51.68 Aligned_cols=82 Identities=12% Similarity=0.160 Sum_probs=51.7
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEe-CCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHH
Q 023866 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAV-HSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKA 86 (276)
Q Consensus 9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~-~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~ 86 (276)
..+||+|||+ |..|.-+.+.|.+.+| +..++.... .|+..+.-........+.....+.+.++|+||+|+|.....+
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~h-P~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~s~~ 84 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDF-PYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSISKK 84 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCC-CcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHHHHH
Confidence 3579999988 9999999998888777 444554331 333222211111112222222244578999999999988778
Q ss_pred HHHHH
Q 023866 87 AVITE 91 (276)
Q Consensus 87 vl~~~ 91 (276)
+..++
T Consensus 85 ~~~~~ 89 (344)
T PLN02383 85 FGPIA 89 (344)
T ss_pred HHHHH
Confidence 87766
No 328
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=96.14 E-value=0.024 Score=47.87 Aligned_cols=67 Identities=12% Similarity=0.255 Sum_probs=47.5
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH--cCceec----cC-c---hhhh-cCCCEEE
Q 023866 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--IGVKVL----SD-N---NAVV-EYSDVVV 76 (276)
Q Consensus 9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~--~g~~~~----~~-~---~~~~-~~aDvI~ 76 (276)
++++|.|+|+ |.+|+.++..|++.|+ +|++. .|++++...+.. .++.+. .+ . .+.+ ..+|+||
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~----~V~~~-~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi 90 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGF----AVKAG-VRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVI 90 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCC----EEEEE-ecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEE
Confidence 3689999995 9999999999999998 99988 898877654432 133211 11 1 1234 4789999
Q ss_pred EeeC
Q 023866 77 FSVK 80 (276)
Q Consensus 77 lav~ 80 (276)
.+..
T Consensus 91 ~~~g 94 (251)
T PLN00141 91 CATG 94 (251)
T ss_pred ECCC
Confidence 7754
No 329
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.11 E-value=0.042 Score=49.01 Aligned_cols=74 Identities=16% Similarity=0.157 Sum_probs=51.2
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCceeccCch---------hhh--cCCCEEEEee
Q 023866 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNN---------AVV--EYSDVVVFSV 79 (276)
Q Consensus 12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~~~~~---------~~~--~~aDvI~lav 79 (276)
++.|+|+|.||...+..+...|. .+|++. |++++|++.+++ .|.....+.. +.. ..+|++|-|+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga---~~Viv~-d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGA---SVVIVV-DRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCC---ceEEEe-CCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 89999999999977666655654 488888 999999999888 5655332221 111 2489999998
Q ss_pred Ccc-cHHHHHH
Q 023866 80 KPQ-VDKAAVI 89 (276)
Q Consensus 80 ~~~-~~~~vl~ 89 (276)
-.. .+.+.+.
T Consensus 247 G~~~~~~~ai~ 257 (350)
T COG1063 247 GSPPALDQALE 257 (350)
T ss_pred CCHHHHHHHHH
Confidence 622 3444443
No 330
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.09 E-value=0.019 Score=52.89 Aligned_cols=65 Identities=15% Similarity=0.193 Sum_probs=48.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH--HHHHHHH--cCceecc--CchhhhcCCCEEEEee
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFES--IGVKVLS--DNNAVVEYSDVVVFSV 79 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~--~~~~l~~--~g~~~~~--~~~~~~~~aDvI~lav 79 (276)
.-.|.|||.|..|.++|+.|.+.|+ +|+++ |..+. ..+.|++ .|+.+.. ...+.+.++|+||.+-
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~----~v~~~-D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp 76 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGI----PFAVM-DSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISP 76 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCC----eEEEE-eCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECC
Confidence 4579999999999999999999999 99999 86543 2344655 3776532 2345567899998863
No 331
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=96.09 E-value=0.018 Score=51.23 Aligned_cols=78 Identities=14% Similarity=0.225 Sum_probs=47.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-c------C-------ceeccCchhhhcCCCEE
Q 023866 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I------G-------VKVLSDNNAVVEYSDVV 75 (276)
Q Consensus 11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~------g-------~~~~~~~~~~~~~aDvI 75 (276)
+||+|+|+ |.||.-+++.|.+...+ +|...++++++.-+.+.+ . + ..+.....+...++|+|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~---~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV 77 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYF---ELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIV 77 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCc---eEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEE
Confidence 58999996 99999999988765421 555332444332222211 0 1 11111122345789999
Q ss_pred EEeeCcccHHHHHHHH
Q 023866 76 VFSVKPQVDKAAVITE 91 (276)
Q Consensus 76 ~lav~~~~~~~vl~~~ 91 (276)
|+|+|+....++...+
T Consensus 78 f~a~p~~~s~~~~~~~ 93 (341)
T TIGR00978 78 FSALPSEVAEEVEPKL 93 (341)
T ss_pred EEeCCHHHHHHHHHHH
Confidence 9999998777666655
No 332
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.09 E-value=0.022 Score=55.13 Aligned_cols=68 Identities=18% Similarity=0.242 Sum_probs=49.3
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH---------------------HHHHHHHcCceeccC-
Q 023866 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVLSD- 64 (276)
Q Consensus 7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~---------------------~~~~l~~~g~~~~~~- 64 (276)
+...++|.|||+|..|.+.|..|.+.|+ +|+++ ++++. ..+.+.+.|+.+..+
T Consensus 190 ~~~~k~VaIIGaGpAGl~aA~~La~~G~----~Vtv~-e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~ 264 (652)
T PRK12814 190 PKSGKKVAIIGAGPAGLTAAYYLLRKGH----DVTIF-DANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNT 264 (652)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC----cEEEE-ecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCC
Confidence 3456899999999999999999999999 99999 77642 134445567654211
Q ss_pred -------chhhhcCCCEEEEee
Q 023866 65 -------NNAVVEYSDVVVFSV 79 (276)
Q Consensus 65 -------~~~~~~~aDvI~lav 79 (276)
..+....+|.||+++
T Consensus 265 ~v~~dv~~~~~~~~~DaVilAt 286 (652)
T PRK12814 265 VFGRDITLEELQKEFDAVLLAV 286 (652)
T ss_pred cccCccCHHHHHhhcCEEEEEc
Confidence 223334589999998
No 333
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=96.09 E-value=0.021 Score=53.74 Aligned_cols=42 Identities=19% Similarity=0.307 Sum_probs=35.6
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (276)
Q Consensus 9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (276)
+.++|.|.|+ |.+|..+++.|++.|+ +|+++ .|+.++.+.+.
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~----~Vval-~Rn~ekl~~l~ 121 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGF----RVRAG-VRSAQRAESLV 121 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHH
Confidence 4566888876 9999999999999999 99999 99988876543
No 334
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.05 E-value=0.024 Score=53.97 Aligned_cols=69 Identities=17% Similarity=0.173 Sum_probs=49.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC---------------------HHHHHHHHHcCceeccC-
Q 023866 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN---------------------LKRRDAFESIGVKVLSD- 64 (276)
Q Consensus 7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~---------------------~~~~~~l~~~g~~~~~~- 64 (276)
+...++|.|||+|..|.+.+..|.+.|+ +|+++ ++. ..+.+.+.+.|+.+..+
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~----~V~v~-e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~ 208 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGH----AVTIF-EAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGV 208 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC----eEEEE-ecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 3456799999999999999999999998 89998 853 23345566677653211
Q ss_pred -------chhhhcCCCEEEEeeC
Q 023866 65 -------NNAVVEYSDVVVFSVK 80 (276)
Q Consensus 65 -------~~~~~~~aDvI~lav~ 80 (276)
..+.-...|+||+++-
T Consensus 209 ~~~~~~~~~~~~~~~D~Vi~AtG 231 (564)
T PRK12771 209 RVGEDITLEQLEGEFDAVFVAIG 231 (564)
T ss_pred EECCcCCHHHHHhhCCEEEEeeC
Confidence 1122345899999993
No 335
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.04 E-value=0.028 Score=51.84 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=50.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH--HHHHHHH--cCceecc--CchhhhcCCCEEEEee--C
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFES--IGVKVLS--DNNAVVEYSDVVVFSV--K 80 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~--~~~~l~~--~g~~~~~--~~~~~~~~aDvI~lav--~ 80 (276)
+.++|.|+|.|..|.+.++.|.+.|+ +|+++ |.++. ..+++.+ .|+.+.. ...+...++|+||.+. |
T Consensus 4 ~~~~~~v~G~g~~G~~~a~~l~~~g~----~v~~~-d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~ 78 (445)
T PRK04308 4 QNKKILVAGLGGTGISMIAYLRKNGA----EVAAY-DAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGIS 78 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCC
Confidence 45789999999999999999999999 99999 86543 2345554 3766432 1233346899999975 5
Q ss_pred cc
Q 023866 81 PQ 82 (276)
Q Consensus 81 ~~ 82 (276)
|.
T Consensus 79 ~~ 80 (445)
T PRK04308 79 ER 80 (445)
T ss_pred CC
Confidence 43
No 336
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=96.01 E-value=0.014 Score=51.63 Aligned_cols=82 Identities=16% Similarity=0.241 Sum_probs=52.4
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCC-CHHHHHHHHHcCceeccCchhh-hcCCCEEEEeeCcccH
Q 023866 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFESIGVKVLSDNNAV-VEYSDVVVFSVKPQVD 84 (276)
Q Consensus 8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r-~~~~~~~l~~~g~~~~~~~~~~-~~~aDvI~lav~~~~~ 84 (276)
++.+||+|||+ |..|.-|.+.|.+..| +..++.....+ +.-+.-.+....+.+. +.++. ..++|++|+|+|....
T Consensus 2 ~~~~~vaIvGATG~vG~ellrlL~~~~h-P~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~~~Dvvf~a~p~~~s 79 (336)
T PRK08040 2 SEGWNIALLGATGAVGEALLELLAERQF-PVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWSQAQLAFFVAGREAS 79 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhcCCC-CceEEEEEEccCcCCceEEECCcceEEE-eCchhhccCCCEEEECCCHHHH
Confidence 46789999998 9999999998877555 55576655122 2111111111123332 33332 2689999999998887
Q ss_pred HHHHHHH
Q 023866 85 KAAVITE 91 (276)
Q Consensus 85 ~~vl~~~ 91 (276)
.++.+++
T Consensus 80 ~~~~~~~ 86 (336)
T PRK08040 80 AAYAEEA 86 (336)
T ss_pred HHHHHHH
Confidence 7777766
No 337
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=95.94 E-value=0.058 Score=46.70 Aligned_cols=78 Identities=17% Similarity=0.195 Sum_probs=61.1
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCC--HHHHHHHHHcCceeccCchhhhcC--CCEEEEeeCccc
Q 023866 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSN--LKRRDAFESIGVKVLSDNNAVVEY--SDVVVFSVKPQV 83 (276)
Q Consensus 9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~--~~~~~~l~~~g~~~~~~~~~~~~~--aDvI~lav~~~~ 83 (276)
++.||.|.|. |.+|..+..+|.+.|+ ..++.+ +++ .+.. .|+..+.+..++-+. .|+.+++||++.
T Consensus 7 ~~~~~~v~~~~~~~g~~~l~~l~~~g~---~~v~pV-np~~~~~~v-----~G~~~y~sv~dlp~~~~~DlAvi~vp~~~ 77 (291)
T PRK05678 7 KDTKVIVQGITGKQGTFHTEQMLAYGT---NIVGGV-TPGKGGTTV-----LGLPVFNTVAEAVEATGANASVIYVPPPF 77 (291)
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHCCC---CEEEEE-CCCCCCCeE-----eCeeccCCHHHHhhccCCCEEEEEcCHHH
Confidence 5679999999 8899999999999888 134344 654 2221 588888888888776 899999999999
Q ss_pred HHHHHHHHhhcc
Q 023866 84 DKAAVITEEAFG 95 (276)
Q Consensus 84 ~~~vl~~~~~~~ 95 (276)
+.+++++..+.|
T Consensus 78 v~~~l~e~~~~g 89 (291)
T PRK05678 78 AADAILEAIDAG 89 (291)
T ss_pred HHHHHHHHHHCC
Confidence 999999885434
No 338
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.92 E-value=0.028 Score=48.49 Aligned_cols=54 Identities=15% Similarity=0.211 Sum_probs=43.5
Q ss_pred CCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeC
Q 023866 8 AESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK 80 (276)
Q Consensus 8 ~~~~kIgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~ 80 (276)
.+.+++.|||.|. .|.+++..|.+.|. .|+++ +|..+ +..+.++++|+||-|+.
T Consensus 157 l~Gk~vvViG~gg~vGkpia~~L~~~ga----tVtv~-~~~t~--------------~L~~~~~~aDIvI~AtG 211 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKPMAMMLLNANA----TVTIC-HSRTQ--------------NLPELVKQADIIVGAVG 211 (283)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCC----EEEEE-eCCch--------------hHHHHhccCCEEEEccC
Confidence 3567999999998 99999999999887 99999 77322 23344588999999993
No 339
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=95.88 E-value=0.019 Score=52.75 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=46.0
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHH-HH----HHH-HcCceecc-CchhhhcCCCEEEEee
Q 023866 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RD----AFE-SIGVKVLS-DNNAVVEYSDVVVFSV 79 (276)
Q Consensus 12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~-~~----~l~-~~g~~~~~-~~~~~~~~aDvI~lav 79 (276)
||.|||+|..|.++|+.|.+.|+ +|+++ |.++.. .+ .+. ..|+.+.. ...+.+.++|+||.+-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~----~V~~s-D~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp 70 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGA----EVTVT-DLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSP 70 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCC----EEEEE-eCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECC
Confidence 58999999999999999999999 99999 865431 11 223 24776532 2245567899999864
No 340
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.88 E-value=0.018 Score=52.65 Aligned_cols=68 Identities=19% Similarity=0.208 Sum_probs=49.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHH----HHHHHHcCceecc--CchhhhcCCCEEEEe--eCc
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR----RDAFESIGVKVLS--DNNAVVEYSDVVVFS--VKP 81 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~----~~~l~~~g~~~~~--~~~~~~~~aDvI~la--v~~ 81 (276)
.+||.|+|+|.-|.+.++.|.+.|+ +|+++ |.++.. ...+...++.+.. .+.+...++|+|+++ +|+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~----~v~v~-D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~ 81 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGA----EVTVS-DDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPP 81 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCC----eEEEE-cCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCC
Confidence 6899999999999999999999998 99999 866544 1222235654322 222456789999996 455
Q ss_pred c
Q 023866 82 Q 82 (276)
Q Consensus 82 ~ 82 (276)
.
T Consensus 82 ~ 82 (448)
T COG0771 82 T 82 (448)
T ss_pred C
Confidence 4
No 341
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.88 E-value=0.019 Score=51.22 Aligned_cols=81 Identities=7% Similarity=0.039 Sum_probs=51.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH--HHHHHHHcCceecc-CchhhhcCCCEEEEeeCcccHH
Q 023866 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFESIGVKVLS-DNNAVVEYSDVVVFSVKPQVDK 85 (276)
Q Consensus 10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~--~~~~l~~~g~~~~~-~~~~~~~~aDvI~lav~~~~~~ 85 (276)
|++|||||+ |..|.-|.+.+++...++..++..+ ..+.. +.-.+......+.. ...+...++|++|+|++.....
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~-ss~~sg~~~~~f~g~~~~v~~~~~~~~~~~~Divf~a~~~~~s~ 79 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFF-STSQAGGAAPSFGGKEGTLQDAFDIDALKKLDIIITCQGGDYTN 79 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEe-cchhhCCcccccCCCcceEEecCChhHhcCCCEEEECCCHHHHH
Confidence 479999998 9999999986666555455557666 43211 11111111122222 1123457899999999988878
Q ss_pred HHHHHH
Q 023866 86 AAVITE 91 (276)
Q Consensus 86 ~vl~~~ 91 (276)
++...+
T Consensus 80 ~~~~~~ 85 (369)
T PRK06598 80 EVYPKL 85 (369)
T ss_pred HHHHHH
Confidence 887766
No 342
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=95.87 E-value=0.017 Score=49.98 Aligned_cols=29 Identities=24% Similarity=0.348 Sum_probs=24.9
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEE
Q 023866 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTA 43 (276)
Q Consensus 12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~ 43 (276)
||.|||+|.+|+.+++.|...|. .+|+++
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGV---g~Itlv 29 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGV---RHITFV 29 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC---CeEEEE
Confidence 68999999999999999999996 355554
No 343
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=95.86 E-value=0.014 Score=51.50 Aligned_cols=74 Identities=12% Similarity=0.248 Sum_probs=48.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH-HHHHcCceec-c---CchhhhcCCCEEEE---eeCc
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD-AFESIGVKVL-S---DNNAVVEYSDVVVF---SVKP 81 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~-~l~~~g~~~~-~---~~~~~~~~aDvI~l---av~~ 81 (276)
+++|||||.|.+|..|+..-.+-|+ ++.+. |.+++.-. +....-+... + ...++++.||+|=. =||.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~----~v~vL-dp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~V~~ 75 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGI----KVIVL-DPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFENVPA 75 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCC----EEEEe-cCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEeeccCCH
Confidence 4789999999999999999999999 99999 87765422 2222112211 2 23466778888844 2344
Q ss_pred ccHHHHH
Q 023866 82 QVDKAAV 88 (276)
Q Consensus 82 ~~~~~vl 88 (276)
+.+..+.
T Consensus 76 ~aL~~l~ 82 (375)
T COG0026 76 EALEKLA 82 (375)
T ss_pred HHHHHHH
Confidence 4444443
No 344
>PRK07411 hypothetical protein; Validated
Probab=95.86 E-value=0.039 Score=49.95 Aligned_cols=78 Identities=18% Similarity=0.146 Sum_probs=51.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH-------------------HH----HHHHH--cCcee---
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-------------------RR----DAFES--IGVKV--- 61 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~-------------------~~----~~l~~--~g~~~--- 61 (276)
..||.|||+|.+|+.++..|..+|. .+++++ |.+.- |+ +.+++ ..+++
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~Gv---g~l~lv-D~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~ 113 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAGI---GRIGIV-DFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY 113 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-CCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence 5789999999999999999999997 366666 54321 11 22222 22221
Q ss_pred ----cc-CchhhhcCCCEEEEeeCcccHHHHHHHH
Q 023866 62 ----LS-DNNAVVEYSDVVVFSVKPQVDKAAVITE 91 (276)
Q Consensus 62 ----~~-~~~~~~~~aDvI~lav~~~~~~~vl~~~ 91 (276)
.. +..+.+.++|+||.|+.....+..+.+.
T Consensus 114 ~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~ 148 (390)
T PRK07411 114 ETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDA 148 (390)
T ss_pred ecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHH
Confidence 11 1235678999999999766666555544
No 345
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=95.83 E-value=0.014 Score=51.71 Aligned_cols=78 Identities=19% Similarity=0.230 Sum_probs=51.4
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCc--eeccCchhhhcCCCEEEEeeCcccHHHHH
Q 023866 12 ILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV--KVLSDNNAVVEYSDVVVFSVKPQVDKAAV 88 (276)
Q Consensus 12 kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~--~~~~~~~~~~~~aDvI~lav~~~~~~~vl 88 (276)
||+|||+ |..|..|++.|.+.+| +..++.+. .++.+.-+.+.-.|. .+.+-..+...++|++|+|++.....++.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~h-p~~~l~~~-as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~~s~~~a 78 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNF-PIDKLVLL-ASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGSVSKEFA 78 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCC-ChhhEEEE-eccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHHHHHHHH
Confidence 6899995 9999999999988877 44455554 444333222222232 22211223457899999999988877777
Q ss_pred HHH
Q 023866 89 ITE 91 (276)
Q Consensus 89 ~~~ 91 (276)
..+
T Consensus 79 ~~~ 81 (339)
T TIGR01296 79 PKA 81 (339)
T ss_pred HHH
Confidence 765
No 346
>PRK06182 short chain dehydrogenase; Validated
Probab=95.81 E-value=0.037 Score=47.21 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=38.6
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCc
Q 023866 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV 59 (276)
Q Consensus 9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~ 59 (276)
+.++|.|.|+ |.+|.++++.|.+.|+ +|++. +|++++++.+...++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~----~V~~~-~r~~~~l~~~~~~~~ 48 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY----TVYGA-ARRVDKMEDLASLGV 48 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHhCCC
Confidence 4578888886 9999999999999999 99999 999988877655443
No 347
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.79 E-value=0.077 Score=44.03 Aligned_cols=83 Identities=14% Similarity=0.206 Sum_probs=56.6
Q ss_pred CCCCC--CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-HHHHHHHHc-Cceecc-C-chhhhcCCCEEEE
Q 023866 4 FPIPA--ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESI-GVKVLS-D-NNAVVEYSDVVVF 77 (276)
Q Consensus 4 ~~~~~--~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~-g~~~~~-~-~~~~~~~aDvI~l 77 (276)
+|... +.++|-|||.|.+|..=+..|++.|- +|+|+ ...- +.++.+.+. .+.... + ..+.++.+++||.
T Consensus 17 ~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA----~VtVV-ap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LVia 91 (223)
T PRK05562 17 MFISLLSNKIKVLIIGGGKAAFIKGKTFLKKGC----YVYIL-SKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVI 91 (223)
T ss_pred eeeEEECCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-cCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEE
Confidence 45443 36799999999999998999999997 99998 6543 233444443 343221 1 1233678999999
Q ss_pred eeCcccHHHHHHHH
Q 023866 78 SVKPQVDKAAVITE 91 (276)
Q Consensus 78 av~~~~~~~vl~~~ 91 (276)
|+.+..+..-+...
T Consensus 92 ATdD~~vN~~I~~~ 105 (223)
T PRK05562 92 ATDDEKLNNKIRKH 105 (223)
T ss_pred CCCCHHHHHHHHHH
Confidence 99887766555444
No 348
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.77 E-value=0.037 Score=51.16 Aligned_cols=63 Identities=22% Similarity=0.276 Sum_probs=46.7
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH-HH----HHHHHcCceecc-C-ch-----hhhcCCCEEEEee
Q 023866 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-RR----DAFESIGVKVLS-D-NN-----AVVEYSDVVVFSV 79 (276)
Q Consensus 12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~-~~----~~l~~~g~~~~~-~-~~-----~~~~~aDvI~lav 79 (276)
||.|||+|..|.+.|+.|.+.|+ +|.++ |+++. .. +.+.+.|+.+.. . .. ....++|+||.+-
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~----~V~~~-D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~ 76 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGW----EVVVS-DRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSP 76 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC----EEEEE-CCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECC
Confidence 79999999999999999999999 99999 87643 22 345567876532 1 11 2456799999854
No 349
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=95.66 E-value=0.055 Score=50.32 Aligned_cols=68 Identities=15% Similarity=0.268 Sum_probs=48.8
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH---------------------HHHHHHHcCceecc--
Q 023866 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVLS-- 63 (276)
Q Consensus 7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~---------------------~~~~l~~~g~~~~~-- 63 (276)
+...++|.|||.|.-|.+.|..|.+.|+ +|+++ ++.+. ..+.+.+.|+.+..
T Consensus 140 ~~~~~~VvIIGaGpAGl~aA~~l~~~G~----~V~vi-e~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~ 214 (471)
T PRK12810 140 KRTGKKVAVVGSGPAGLAAADQLARAGH----KVTVF-ERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNV 214 (471)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCC----cEEEE-ecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCC
Confidence 3456799999999999999999999999 89998 76531 12344556765321
Q ss_pred ------CchhhhcCCCEEEEee
Q 023866 64 ------DNNAVVEYSDVVVFSV 79 (276)
Q Consensus 64 ------~~~~~~~~aDvI~lav 79 (276)
+..+....+|.||+++
T Consensus 215 ~v~~~~~~~~~~~~~d~vvlAt 236 (471)
T PRK12810 215 EVGKDITAEELLAEYDAVFLGT 236 (471)
T ss_pred EECCcCCHHHHHhhCCEEEEec
Confidence 1223335789999998
No 350
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=95.65 E-value=0.031 Score=48.67 Aligned_cols=64 Identities=17% Similarity=0.307 Sum_probs=50.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeC
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK 80 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~ 80 (276)
.+++|+||+|++|+-++..+..-|. .+..+.+..+. +.++..|++.. +.+|+...||.|=+=+|
T Consensus 146 GKTLgvlG~GrIGseVA~r~k~~gm----~vI~~dpi~~~--~~~~a~gvq~v-sl~Eil~~ADFitlH~P 209 (406)
T KOG0068|consen 146 GKTLGVLGLGRIGSEVAVRAKAMGM----HVIGYDPITPM--ALAEAFGVQLV-SLEEILPKADFITLHVP 209 (406)
T ss_pred ccEEEEeecccchHHHHHHHHhcCc----eEEeecCCCch--HHHHhccceee-eHHHHHhhcCEEEEccC
Confidence 4789999999999999999887776 77777233332 45556899875 57889999999988776
No 351
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=95.58 E-value=0.11 Score=43.58 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=26.8
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCC
Q 023866 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS 46 (276)
Q Consensus 12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r 46 (276)
||.+||+|.+|+.+++.|...|+ .+++++ |.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gv---g~i~iv-D~ 31 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGF---GQIHVI-DM 31 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC---CeEEEE-eC
Confidence 68999999999999999999997 467776 54
No 352
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=95.57 E-value=0.12 Score=44.31 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=29.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (276)
...+|.|||+|.+|+..+..|.++|. .+++++ |.+
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GV---g~itLi-D~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGI---GAITLI-DMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCC---CEEEEE-eCC
Confidence 45789999999999999999999995 367776 543
No 353
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=95.55 E-value=0.082 Score=46.30 Aligned_cols=82 Identities=15% Similarity=0.235 Sum_probs=51.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEe-CCCHHHH-HHHHHcCceecc--CchhhhcCCCEEEEeeCcccH
Q 023866 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAV-HSNLKRR-DAFESIGVKVLS--DNNAVVEYSDVVVFSVKPQVD 84 (276)
Q Consensus 10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~-~r~~~~~-~~l~~~g~~~~~--~~~~~~~~aDvI~lav~~~~~ 84 (276)
+++|||+|+ |.+|+.|.+.|.+..+ +-..+.++. .|+.-+. -.+....+.+-. ......+++|++|.|.+...-
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f-~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s 79 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHF-PFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVS 79 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCC-CcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchHHH
Confidence 479999987 9999999999887643 333444441 3433222 222222222222 122335689999999988777
Q ss_pred HHHHHHHh
Q 023866 85 KAAVITEE 92 (276)
Q Consensus 85 ~~vl~~~~ 92 (276)
+++.+.+.
T Consensus 80 ~~~~p~~~ 87 (334)
T COG0136 80 KEVEPKAA 87 (334)
T ss_pred HHHHHHHH
Confidence 88877774
No 354
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=95.53 E-value=0.021 Score=49.87 Aligned_cols=68 Identities=12% Similarity=0.165 Sum_probs=45.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHHH
Q 023866 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAV 88 (276)
Q Consensus 10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl 88 (276)
++||+|||+ |..|.-+.+.|.+..++ ++... ..+..+ .. .+..+...++|++|+|+|.....++.
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~---~l~~~-~s~~~~-------~~---~~~~~~~~~~DvvFlalp~~~s~~~~ 67 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDI---ELLSI-PEAKRK-------DA---AARRELLNAADVAILCLPDDAAREAV 67 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCe---EEEEE-ecCCCC-------cc---cCchhhhcCCCEEEECCCHHHHHHHH
Confidence 579999996 99999999977665421 33333 222111 11 22334557899999999998877877
Q ss_pred HHH
Q 023866 89 ITE 91 (276)
Q Consensus 89 ~~~ 91 (276)
.++
T Consensus 68 ~~~ 70 (313)
T PRK11863 68 ALI 70 (313)
T ss_pred HHH
Confidence 776
No 355
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=95.53 E-value=0.044 Score=49.72 Aligned_cols=77 Identities=18% Similarity=0.248 Sum_probs=54.2
Q ss_pred CCCCeEEEEcccHHHHHH-HHHHH-hCCCCCCCeEEEEeCCCHHHHHHHH-------H-cC----ceeccCchhhhcCCC
Q 023866 8 AESFILGFIGAGKMAESI-AKGVA-KSGVLPPDRICTAVHSNLKRRDAFE-------S-IG----VKVLSDNNAVVEYSD 73 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~l-a~~l~-~~g~~~~~~V~v~~~r~~~~~~~l~-------~-~g----~~~~~~~~~~~~~aD 73 (276)
|+++||+|||.|.-..+- ..+++ +.--++..+|.++ |.++++.+... + .| +..++|..+++++||
T Consensus 1 m~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~-Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~gAd 79 (442)
T COG1486 1 MKKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALY-DIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEGAD 79 (442)
T ss_pred CCcceEEEECCCccccHHHHHHHHhcCccCCcceEEEE-eCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcCCC
Confidence 467899999999887653 22333 2222455688999 99998876322 2 34 345678899999999
Q ss_pred EEEEeeCcccHH
Q 023866 74 VVVFSVKPQVDK 85 (276)
Q Consensus 74 vI~lav~~~~~~ 85 (276)
.|+.++.+..++
T Consensus 80 fVi~~~rvG~l~ 91 (442)
T COG1486 80 FVITQIRVGGLE 91 (442)
T ss_pred EEEEEEeeCCcc
Confidence 999999766543
No 356
>PRK10637 cysG siroheme synthase; Provisional
Probab=95.52 E-value=0.1 Score=48.28 Aligned_cols=83 Identities=17% Similarity=0.278 Sum_probs=59.4
Q ss_pred CCCCCCC--CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-HHHHHHHHcC-ceeccC--chhhhcCCCE
Q 023866 1 MDAFPIP--AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIG-VKVLSD--NNAVVEYSDV 74 (276)
Q Consensus 1 ~~~~~~~--~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~g-~~~~~~--~~~~~~~aDv 74 (276)
|+.+|.. .+.++|.|||.|.++..=++.|++.|- +|+++ .+.- +..+.+.+.| +..... ..+.++++++
T Consensus 1 m~~~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga----~v~vi-sp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~l 75 (457)
T PRK10637 1 MDHLPIFCQLRDRDCLLVGGGDVAERKARLLLDAGA----RLTVN-ALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWL 75 (457)
T ss_pred CCeeceEEEcCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-cCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEE
Confidence 7888887 467999999999999998999999998 99998 6542 2344444433 332211 1244688999
Q ss_pred EEEeeCcccHHHHH
Q 023866 75 VVFSVKPQVDKAAV 88 (276)
Q Consensus 75 I~lav~~~~~~~vl 88 (276)
||.|+.+..+..-+
T Consensus 76 v~~at~d~~~n~~i 89 (457)
T PRK10637 76 AIAATDDDAVNQRV 89 (457)
T ss_pred EEECCCCHHHhHHH
Confidence 99999887655433
No 357
>PLN02427 UDP-apiose/xylose synthase
Probab=95.51 E-value=0.03 Score=50.53 Aligned_cols=67 Identities=7% Similarity=0.155 Sum_probs=47.1
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhC-CCCCCCeEEEEeCCCHHHHHHHHHc-------Cceec-c------CchhhhcC
Q 023866 8 AESFILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESI-------GVKVL-S------DNNAVVEY 71 (276)
Q Consensus 8 ~~~~kIgiIG~-G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~~-------g~~~~-~------~~~~~~~~ 71 (276)
.+.|||.|.|+ |-+|+.+++.|++. |+ +|++. +|+.++.+.+... ++... . +..+++++
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~----~V~~l-~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~ 86 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTETPH----KVLAL-DVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKM 86 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcCCC----EEEEE-ecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhc
Confidence 34579999985 99999999999988 57 99998 8887766554332 22211 1 12345667
Q ss_pred CCEEEEee
Q 023866 72 SDVVVFSV 79 (276)
Q Consensus 72 aDvI~lav 79 (276)
+|+||=+.
T Consensus 87 ~d~ViHlA 94 (386)
T PLN02427 87 ADLTINLA 94 (386)
T ss_pred CCEEEEcc
Confidence 99988754
No 358
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=95.50 E-value=0.057 Score=47.34 Aligned_cols=74 Identities=19% Similarity=0.223 Sum_probs=42.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCC-C-----CCCeEEEEeCCCHHHHHHHHHcC-ceeccCc-----hhhh--cCCC
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGV-L-----PPDRICTAVHSNLKRRDAFESIG-VKVLSDN-----NAVV--EYSD 73 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~-~-----~~~~V~v~~~r~~~~~~~l~~~g-~~~~~~~-----~~~~--~~aD 73 (276)
|+.++|+++|+|.+|+.+++-|.+++. + ..-+|....+|+....+.+.-.+ ....++. .+++ .+.|
T Consensus 1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (333)
T COG0460 1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDID 80 (333)
T ss_pred CceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhheecccccccHhhhccccCC
Confidence 456899999999999999998877532 0 01123322266655443111122 1122222 3333 3568
Q ss_pred EEEEeeCc
Q 023866 74 VVVFSVKP 81 (276)
Q Consensus 74 vI~lav~~ 81 (276)
+|+-+++.
T Consensus 81 vvve~~~~ 88 (333)
T COG0460 81 VVVELVGG 88 (333)
T ss_pred EEEecCcc
Confidence 99988865
No 359
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=95.46 E-value=0.088 Score=45.47 Aligned_cols=71 Identities=18% Similarity=0.163 Sum_probs=48.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-------------------HHH----HHHHHc--Ccee--
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRR----DAFESI--GVKV-- 61 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~----~~l~~~--g~~~-- 61 (276)
...+|.|+|+|.+|..++++|..+|. ..|+++ |.+. .|+ +++++. .+.+
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLalaGV---g~itI~-D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~ 93 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLILAGV---KSVTLH-DTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTV 93 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHHHcCC---CeEEEE-cCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEE
Confidence 45789999999999999999999997 478887 6432 111 223332 2322
Q ss_pred cc--CchhhhcCCCEEEEeeCccc
Q 023866 62 LS--DNNAVVEYSDVVVFSVKPQV 83 (276)
Q Consensus 62 ~~--~~~~~~~~aDvI~lav~~~~ 83 (276)
.+ ...+.+.+.|+||.+..+..
T Consensus 94 ~~~~~~~~~l~~fdvVV~~~~~~~ 117 (286)
T cd01491 94 STGPLTTDELLKFQVVVLTDASLE 117 (286)
T ss_pred EeccCCHHHHhcCCEEEEecCCHH
Confidence 21 13466789999999875443
No 360
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=95.46 E-value=0.036 Score=49.17 Aligned_cols=63 Identities=13% Similarity=0.164 Sum_probs=44.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhC-CCCCCCeEEEEeCCCHHHHHHHHH-cCceec-cCc-------hhhhcCCCEEEE
Q 023866 10 SFILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES-IGVKVL-SDN-------NAVVEYSDVVVF 77 (276)
Q Consensus 10 ~~kIgiIG~-G~mG~~la~~l~~~-g~~~~~~V~v~~~r~~~~~~~l~~-~g~~~~-~~~-------~~~~~~aDvI~l 77 (276)
||||.|.|+ |-+|+.++..|++. |+ +|++. +|+.++...+.. .++... .|. .++++++|+||=
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~----~V~~~-~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH 74 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDW----EVYGM-DMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILP 74 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCC----eEEEE-eCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEE
Confidence 478999997 99999999999876 68 99999 888766554433 233321 121 234678999994
No 361
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=95.45 E-value=0.019 Score=50.15 Aligned_cols=64 Identities=13% Similarity=0.195 Sum_probs=46.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-------cCchhhhcCCCEEEEee
Q 023866 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-------SDNNAVVEYSDVVVFSV 79 (276)
Q Consensus 11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~~aDvI~lav 79 (276)
|+|.|.|+ |.+|..++..|++.|+ +|++. +|++++...+...++... .+..++++.+|+||-+.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a 72 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE----EVRVL-VRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVA 72 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC----EEEEE-EecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEec
Confidence 57999985 9999999999999998 99999 888776544433343321 12334567889998875
No 362
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.44 E-value=0.067 Score=49.18 Aligned_cols=64 Identities=19% Similarity=0.124 Sum_probs=46.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH--HHHHHHHcCceecc--CchhhhcCCCEEEEee
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFESIGVKVLS--DNNAVVEYSDVVVFSV 79 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~--~~~~l~~~g~~~~~--~~~~~~~~aDvI~lav 79 (276)
.++|.|||.|..|.+.++.|.+.|+ +|+++ |..+. ..+.+.+ |+.+.. ...+.+++.|+||.+-
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~----~v~~~-D~~~~~~~~~~l~~-g~~~~~~~~~~~~~~~~d~vv~sp 73 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGV----TPRVI-DTRITPPGLDKLPE-NVERHTGSLNDEWLLAADLIVASP 73 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCC----eEEEE-cCCCCchhHHHHhc-CCEEEeCCCCHHHhcCCCEEEECC
Confidence 4689999999999999999999998 99999 86432 2334533 765532 2334467789877753
No 363
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=95.42 E-value=0.067 Score=48.48 Aligned_cols=78 Identities=15% Similarity=0.137 Sum_probs=50.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-------------------HHHH----HHHH--cCceec--
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRD----AFES--IGVKVL-- 62 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~~----~l~~--~g~~~~-- 62 (276)
..||.|||+|.+|+.++..|..+|. .+++++ |.+. .|++ .+++ ..+.+.
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gv---g~i~lv-D~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 117 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGV---GTLGIV-EFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLH 117 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCC---CeEEEE-CCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEE
Confidence 5789999999999999999999997 366666 5432 1222 2222 123321
Q ss_pred ------cCchhhhcCCCEEEEeeCcccHHHHHHHH
Q 023866 63 ------SDNNAVVEYSDVVVFSVKPQVDKAAVITE 91 (276)
Q Consensus 63 ------~~~~~~~~~aDvI~lav~~~~~~~vl~~~ 91 (276)
.+..+.++++|+||.|+.....+-.+.+.
T Consensus 118 ~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~ 152 (392)
T PRK07878 118 EFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDA 152 (392)
T ss_pred eccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHH
Confidence 11235678899999998665555555443
No 364
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=95.41 E-value=0.11 Score=44.80 Aligned_cols=79 Identities=14% Similarity=0.150 Sum_probs=60.0
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHH-HHHHHHcCceeccCchhhhcC--CCEEEEeeCcccH
Q 023866 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKVLSDNNAVVEY--SDVVVFSVKPQVD 84 (276)
Q Consensus 9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~--aDvI~lav~~~~~ 84 (276)
+..||.|.|. |.+|+.+..++...|+ + .++ .-+|.+ .+. -.|+..+.+..++.+. .|+.++++|+..+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~g~----~-~v~-~V~p~~~~~~--v~G~~~y~sv~dlp~~~~~Dlavi~vpa~~v 76 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAYGT----N-IVG-GVTPGKGGTT--VLGLPVFDSVKEAVEETGANASVIFVPAPFA 76 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhCCC----C-EEE-EECCCCCcce--ecCeeccCCHHHHhhccCCCEEEEecCHHHH
Confidence 4578999997 9999999999999998 5 333 233331 111 1588888888887765 7999999999999
Q ss_pred HHHHHHHhhcc
Q 023866 85 KAAVITEEAFG 95 (276)
Q Consensus 85 ~~vl~~~~~~~ 95 (276)
.+++.+..+.|
T Consensus 77 ~~~l~e~~~~G 87 (286)
T TIGR01019 77 ADAIFEAIDAG 87 (286)
T ss_pred HHHHHHHHHCC
Confidence 99999885434
No 365
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=95.39 E-value=0.054 Score=46.11 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=40.8
Q ss_pred CCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866 6 IPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (276)
Q Consensus 6 ~~~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (276)
.++.++++-|-|+ +.+|..+|+.|.+.|+ +|.++ .|+.++++++.+
T Consensus 2 ~~~~~~~~lITGASsGIG~~~A~~lA~~g~----~liLv-aR~~~kL~~la~ 48 (265)
T COG0300 2 GPMKGKTALITGASSGIGAELAKQLARRGY----NLILV-ARREDKLEALAK 48 (265)
T ss_pred CCCCCcEEEEECCCchHHHHHHHHHHHCCC----EEEEE-eCcHHHHHHHHH
Confidence 4566778888888 9999999999999999 99999 999999988875
No 366
>PLN02477 glutamate dehydrogenase
Probab=95.38 E-value=0.083 Score=47.97 Aligned_cols=78 Identities=17% Similarity=0.172 Sum_probs=51.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEE-EEeCCC----------HHHHHHHHH-c-------CceeccCchhh
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSN----------LKRRDAFES-I-------GVKVLSDNNAV 68 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~r~----------~~~~~~l~~-~-------g~~~~~~~~~~ 68 (276)
.+.++|+|.|.|++|+..++.|.+.|. +|+ ++ |.+ .+.+.+.++ . +.... ++.++
T Consensus 204 l~g~~VaIqGfGnVG~~~A~~L~e~Ga----kVVaVs-D~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e~ 277 (410)
T PLN02477 204 IAGQTFVIQGFGNVGSWAAQLIHEKGG----KIVAVS-DITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDDI 277 (410)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHcCC----EEEEEE-CCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCccc
Confidence 356899999999999999999999998 877 66 776 555533333 1 12211 22232
Q ss_pred -hcCCCEEEEeeCccc-HHHHHHHH
Q 023866 69 -VEYSDVVVFSVKPQV-DKAAVITE 91 (276)
Q Consensus 69 -~~~aDvI~lav~~~~-~~~vl~~~ 91 (276)
..+|||++.|--... -.+....+
T Consensus 278 l~~~~DvliP~Al~~~I~~~na~~i 302 (410)
T PLN02477 278 LVEPCDVLIPAALGGVINKENAADV 302 (410)
T ss_pred eeccccEEeeccccccCCHhHHHHc
Confidence 348999999854333 34444555
No 367
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.38 E-value=0.043 Score=47.21 Aligned_cols=55 Identities=22% Similarity=0.256 Sum_probs=44.8
Q ss_pred CCCCeEEEEcccHH-HHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866 8 AESFILGFIGAGKM-AESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP 81 (276)
Q Consensus 8 ~~~~kIgiIG~G~m-G~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~ 81 (276)
...+++.|||.|.. |.+++..|.+.|. .|+++ ++. +.+..+.+++||+||.+++.
T Consensus 156 l~Gk~vvViGrs~iVGkPla~lL~~~~a----tVt~~-hs~--------------t~~l~~~~~~ADIVV~avG~ 211 (285)
T PRK14189 156 LRGAHAVVIGRSNIVGKPMAMLLLQAGA----TVTIC-HSK--------------TRDLAAHTRQADIVVAAVGK 211 (285)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCC----EEEEe-cCC--------------CCCHHHHhhhCCEEEEcCCC
Confidence 35689999999988 9999999998887 89988 643 12455678999999999973
No 368
>PRK08374 homoserine dehydrogenase; Provisional
Probab=95.32 E-value=0.033 Score=49.37 Aligned_cols=92 Identities=14% Similarity=0.183 Sum_probs=53.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHh--------CCCCCCCeEE-EEeCCCH----------HHHHHHHH-cC-ce-ec-----
Q 023866 10 SFILGFIGAGKMAESIAKGVAK--------SGVLPPDRIC-TAVHSNL----------KRRDAFES-IG-VK-VL----- 62 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~--------~g~~~~~~V~-v~~~r~~----------~~~~~l~~-~g-~~-~~----- 62 (276)
.++|+++|+|++|+.+++.|.+ .|. .-+|. +. |++. +++...++ .+ +. ..
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~--~l~VvaV~-ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~ 78 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGV--ELKVVSIT-DTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEV 78 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCC--CEEEEEEE-eCCccccCCCCCChHHHHHhhhccCchhhccccccc
Confidence 3799999999999999998776 343 01333 34 5432 12212222 12 11 11
Q ss_pred --cCchhhh--cCCCEEEEeeCcccHHHHHHHHhhccccccCCcccCCCC
Q 023866 63 --SDNNAVV--EYSDVVVFSVKPQVDKAAVITEEAFGFCCCRSEIERPSG 108 (276)
Q Consensus 63 --~~~~~~~--~~aDvI~lav~~~~~~~vl~~~~~~~~~~~~~~l~~~~g 108 (276)
.+..+++ .++|+||-++.++...++.......| .+++..+.|
T Consensus 79 ~~~~~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G----~~VVtanK~ 124 (336)
T PRK08374 79 YNFSPEEIVEEIDADIVVDVTNDKNAHEWHLEALKEG----KSVVTSNKP 124 (336)
T ss_pred cCCCHHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhC----CcEEECCHH
Confidence 1444555 47999999998877777766653222 566655433
No 369
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.29 E-value=0.041 Score=50.05 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=44.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhh--cCCCEEEEe--eCcc
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVV--EYSDVVVFS--VKPQ 82 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~--~~aDvI~la--v~~~ 82 (276)
|+|.|+|+|.-|.+.++.|. .|+ +|+++ |.++... .+.+.|+... ..+.. +++|+||.+ +|+.
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~----~V~~~-D~~~~~~-~~~~~gi~~~--~~~~~~~~~~d~vv~sp~i~~~ 67 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFG----GVDIF-DDKFTES-HKDEEGNLLL--PSNDFDPNKSDLEIPSPGIPPS 67 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCC----eEEEE-cCCCCcc-chhhcCCEEe--cHHHcCcCCCCEEEECCCCCCC
Confidence 68999999999999999999 998 99999 8654322 1233476553 22222 468988886 4544
No 370
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=95.28 E-value=0.11 Score=44.70 Aligned_cols=47 Identities=26% Similarity=0.352 Sum_probs=38.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~ 60 (276)
..+|.|+|+|.+|...++.+...|. ..|++. ++++++.+.+++.|+.
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak~~G~---~~Vi~~-~~~~~r~~~a~~~Ga~ 167 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAAGA---ARVVAA-DPSPDRRELALSFGAT 167 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---CEEEEE-CCCHHHHHHHHHcCCc
Confidence 4589999999999998887777786 138888 9999999888888864
No 371
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=95.27 E-value=0.1 Score=40.99 Aligned_cols=67 Identities=16% Similarity=0.248 Sum_probs=48.5
Q ss_pred CCeEEEEc-c-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCH----H---HHHHH----HHcC--ceeccCchhhhcCCCE
Q 023866 10 SFILGFIG-A-GKMAESIAKGVAKSGVLPPDRICTAVHSNL----K---RRDAF----ESIG--VKVLSDNNAVVEYSDV 74 (276)
Q Consensus 10 ~~kIgiIG-~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~----~---~~~~l----~~~g--~~~~~~~~~~~~~aDv 74 (276)
..||+||| . +++..+++..+.+-|. +++++ .... . -.+.. .+.| +.++++..++++++|+
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~~~g~----~~~~~-~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDv 76 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLAKFGM----EVVLI-APEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADV 76 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHHHTTS----EEEEE-SSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SE
T ss_pred CCEEEEECCCCChHHHHHHHHHHHcCC----EEEEE-CCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCE
Confidence 57999999 3 8999999999999998 88887 5433 1 12111 2234 5677888899999999
Q ss_pred EEEeeCc
Q 023866 75 VVFSVKP 81 (276)
Q Consensus 75 I~lav~~ 81 (276)
|..-.-.
T Consensus 77 vy~~~~~ 83 (158)
T PF00185_consen 77 VYTDRWQ 83 (158)
T ss_dssp EEEESSS
T ss_pred EEEcCcc
Confidence 8887643
No 372
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=95.20 E-value=0.13 Score=45.64 Aligned_cols=77 Identities=14% Similarity=0.134 Sum_probs=53.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCC---CHHHHHHHHHcCceeccCchh------hhcCCCEEEEeeC
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS---NLKRRDAFESIGVKVLSDNNA------VVEYSDVVVFSVK 80 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r---~~~~~~~l~~~g~~~~~~~~~------~~~~aDvI~lav~ 80 (276)
..+|.|+|+|.+|...++.+...|. +|+++ +| ++++.+.+++.|+.......+ .....|+||-++-
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~----~vi~~-~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g 247 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGF----EVYVL-NRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATG 247 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC----eEEEE-ecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcC
Confidence 4689999999999998888777887 88888 87 678888887788764321111 1234688888885
Q ss_pred cc-cHHHHHHHH
Q 023866 81 PQ-VDKAAVITE 91 (276)
Q Consensus 81 ~~-~~~~vl~~~ 91 (276)
.. .+.+.+.-+
T Consensus 248 ~~~~~~~~~~~l 259 (355)
T cd08230 248 VPPLAFEALPAL 259 (355)
T ss_pred CHHHHHHHHHHc
Confidence 33 344444333
No 373
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.20 E-value=0.058 Score=49.64 Aligned_cols=64 Identities=16% Similarity=0.108 Sum_probs=46.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC--CCCCCCeEEEEeCCCHH--HHHHHHHcCceec-c-CchhhhcCCCEEEEee
Q 023866 10 SFILGFIGAGKMAESIAKGVAKS--GVLPPDRICTAVHSNLK--RRDAFESIGVKVL-S-DNNAVVEYSDVVVFSV 79 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~--g~~~~~~V~v~~~r~~~--~~~~l~~~g~~~~-~-~~~~~~~~aDvI~lav 79 (276)
.++|.|||+|..|.+-++.|++. |+ +|+++ |.++. ..+.+.+ |+.+. . ...+.+.++|+||.+-
T Consensus 7 ~~~v~viG~G~sG~s~~~~l~~~~~~~----~v~~~-D~~~~~~~~~~l~~-g~~~~~g~~~~~~~~~~d~vV~Sp 76 (438)
T PRK04663 7 IKNVVVVGLGITGLSVVKHLRKYQPQL----TVKVI-DTRETPPGQEQLPE-DVELHSGGWNLEWLLEADLVVTNP 76 (438)
T ss_pred CceEEEEeccHHHHHHHHHHHhcCCCC----eEEEE-eCCCCchhHHHhhc-CCEEEeCCCChHHhccCCEEEECC
Confidence 36899999999999999999987 56 89999 86542 2234544 77653 2 2344467899998864
No 374
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=95.20 E-value=0.022 Score=51.23 Aligned_cols=38 Identities=26% Similarity=0.362 Sum_probs=33.3
Q ss_pred CCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866 6 IPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (276)
Q Consensus 6 ~~~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (276)
++++.|||.|.|. |-+|+.++..|.+.|+ +|++. +|..
T Consensus 17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~----~V~~v-~r~~ 55 (370)
T PLN02695 17 WPSEKLRICITGAGGFIASHIARRLKAEGH----YIIAS-DWKK 55 (370)
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHhCCC----EEEEE-Eecc
Confidence 4457899999987 9999999999999999 99998 7754
No 375
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=95.19 E-value=0.073 Score=49.11 Aligned_cols=66 Identities=17% Similarity=0.245 Sum_probs=46.8
Q ss_pred eEEEEcccHHHH-HHHHHHHhCCCCCCCeEEEEeCCCHH--HHHHHHHcCceec--cCchhhhcCCCEEEEe--eCcc
Q 023866 12 ILGFIGAGKMAE-SIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFESIGVKVL--SDNNAVVEYSDVVVFS--VKPQ 82 (276)
Q Consensus 12 kIgiIG~G~mG~-~la~~l~~~g~~~~~~V~v~~~r~~~--~~~~l~~~g~~~~--~~~~~~~~~aDvI~la--v~~~ 82 (276)
+|-|||.|.+|. ++|..|.+.|+ +|+++ |.++. ..+.+++.|+.+. .+......++|+||.+ +|+.
T Consensus 1 ~~hfigigG~gm~~la~~l~~~G~----~V~~~-D~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~SpgI~~~ 73 (448)
T TIGR01081 1 HIHILGICGTFMGGLAMIAKQLGH----EVTGS-DANVYPPMSTQLEAQGIEIIEGFDAAQLEPKPDLVVIGNAMKRG 73 (448)
T ss_pred CEEEEEECHHhHHHHHHHHHhCCC----EEEEE-CCCCCcHHHHHHHHCCCEEeCCCCHHHCCCCCCEEEECCCCCCC
Confidence 478999999995 57888889999 99999 87542 3345666788764 2333434579999886 4554
No 376
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=95.18 E-value=0.034 Score=51.50 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=33.5
Q ss_pred CCCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866 3 AFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (276)
Q Consensus 3 ~~~~~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (276)
..++++..++|+|||+|.-|.+.|..|.+.|+ +++++ +++
T Consensus 3 ~~~~~~~~~~VaIIGAG~aGL~aA~~l~~~G~----~v~vf-E~~ 42 (461)
T PLN02172 3 PAQNPINSQHVAVIGAGAAGLVAARELRREGH----TVVVF-ERE 42 (461)
T ss_pred CcccCCCCCCEEEECCcHHHHHHHHHHHhcCC----eEEEE-ecC
Confidence 33566678999999999999999999999998 77777 553
No 377
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=95.18 E-value=0.078 Score=44.69 Aligned_cols=50 Identities=16% Similarity=0.093 Sum_probs=40.5
Q ss_pred CCCCCCC-CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866 1 MDAFPIP-AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (276)
Q Consensus 1 ~~~~~~~-~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (276)
|++++++ ++.++|-|+|+ |.+|..+++.|.+.|+ +|++. +|+.++.+.+.
T Consensus 1 ~~~~~~~~l~~k~vlVtG~s~gIG~~la~~l~~~G~----~vv~~-~r~~~~~~~~~ 52 (255)
T PRK06113 1 MFNSDNLRLDGKCAIITGAGAGIGKEIAITFATAGA----SVVVS-DINADAANHVV 52 (255)
T ss_pred CCCccccCcCCCEEEEECCCchHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHH
Confidence 7788665 45678888865 8999999999999998 89888 88887765543
No 378
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.17 E-value=0.1 Score=48.79 Aligned_cols=66 Identities=15% Similarity=0.234 Sum_probs=46.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-----------------HH----HHHHHHcCceecc----
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-----------------KR----RDAFESIGVKVLS---- 63 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-----------------~~----~~~l~~~g~~~~~---- 63 (276)
..++|.|||.|..|...|..|.+.|+ +|+++ ++.+ +. .+.+++.|+.+..
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~----~V~v~-e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v 216 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGH----TVTVF-EREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEI 216 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC----eEEEE-ecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEe
Confidence 44799999999999999999999998 89988 7543 11 2334446765421
Q ss_pred ----CchhhhcCCCEEEEee
Q 023866 64 ----DNNAVVEYSDVVVFSV 79 (276)
Q Consensus 64 ----~~~~~~~~aDvI~lav 79 (276)
+..+....+|.||+++
T Consensus 217 ~~~~~~~~~~~~~d~VilAt 236 (485)
T TIGR01317 217 GVDISADELKEQFDAVVLAG 236 (485)
T ss_pred CCccCHHHHHhhCCEEEEcc
Confidence 1122334689999998
No 379
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=95.15 E-value=0.027 Score=47.74 Aligned_cols=56 Identities=13% Similarity=0.159 Sum_probs=40.8
Q ss_pred cccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhc-CCCEEEE
Q 023866 17 GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE-YSDVVVF 77 (276)
Q Consensus 17 G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~aDvI~l 77 (276)
|.|.+|+++...|.+.|| +|++. .|++.+.+......+...+...+... .+|+||=
T Consensus 6 gTGlIG~~L~~~L~~~gh----~v~il-tR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavIN 62 (297)
T COG1090 6 GTGLIGRALTARLRKGGH----QVTIL-TRRPPKASQNLHPNVTLWEGLADALTLGIDAVIN 62 (297)
T ss_pred cccchhHHHHHHHHhCCC----eEEEE-EcCCcchhhhcCccccccchhhhcccCCCCEEEE
Confidence 679999999999999999 99999 89888766544333332233334344 6999985
No 380
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=95.15 E-value=0.078 Score=47.16 Aligned_cols=69 Identities=13% Similarity=0.100 Sum_probs=48.1
Q ss_pred CCCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----cCcee-ccC------chhhhcCC
Q 023866 6 IPAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGVKV-LSD------NNAVVEYS 72 (276)
Q Consensus 6 ~~~~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g~~~-~~~------~~~~~~~a 72 (276)
.+.+.|||.|.| +|-+|+.+++.|++.|+ +|++. +|++++.+.+.. .++.. ..| ..+++++.
T Consensus 6 ~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (353)
T PLN02896 6 RESATGTYCVTGATGYIGSWLVKLLLQRGY----TVHAT-LRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGC 80 (353)
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCC
Confidence 345678999998 59999999999999998 99988 888776554432 12221 111 23445678
Q ss_pred CEEEEee
Q 023866 73 DVVVFSV 79 (276)
Q Consensus 73 DvI~lav 79 (276)
|+||-+.
T Consensus 81 d~Vih~A 87 (353)
T PLN02896 81 DGVFHVA 87 (353)
T ss_pred CEEEECC
Confidence 8888765
No 381
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=95.14 E-value=0.028 Score=48.29 Aligned_cols=62 Identities=21% Similarity=0.192 Sum_probs=44.0
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCce---e-ccC---chhhh------cC-CCEEE
Q 023866 12 ILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK---V-LSD---NNAVV------EY-SDVVV 76 (276)
Q Consensus 12 kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~---~-~~~---~~~~~------~~-aDvI~ 76 (276)
+|.|+|+ |.+|+.+++.|++.|+ +|++. .|++++... .++. . ..| ..+++ .. +|.||
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~----~V~~~-~R~~~~~~~---~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~ 72 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV----PFLVA-SRSSSSSAG---PNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVY 72 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC----cEEEE-eCCCccccC---CCCccccccCCCHHHHHHHHhcccCcCCceeEEE
Confidence 5889988 9999999999999999 99999 898875432 2221 1 112 22333 45 89999
Q ss_pred EeeCc
Q 023866 77 FSVKP 81 (276)
Q Consensus 77 lav~~ 81 (276)
++.++
T Consensus 73 ~~~~~ 77 (285)
T TIGR03649 73 LVAPP 77 (285)
T ss_pred EeCCC
Confidence 88763
No 382
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.10 E-value=0.13 Score=44.55 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=45.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCch
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNN 66 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~ 66 (276)
..+++|+|+|.+|.+.+.+-..+|- .+|+.+ |.|+++.+..++.|++-+-++.
T Consensus 193 GstvAVfGLG~VGLav~~Gaka~GA---srIIgv-DiN~~Kf~~ak~fGaTe~iNp~ 245 (375)
T KOG0022|consen 193 GSTVAVFGLGGVGLAVAMGAKAAGA---SRIIGV-DINPDKFEKAKEFGATEFINPK 245 (375)
T ss_pred CCEEEEEecchHHHHHHHhHHhcCc---ccEEEE-ecCHHHHHHHHhcCcceecChh
Confidence 4689999999999999999988886 589999 9999999999999987544444
No 383
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.08 E-value=0.064 Score=46.15 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=45.0
Q ss_pred CCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeC
Q 023866 7 PAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK 80 (276)
Q Consensus 7 ~~~~~kIgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~ 80 (276)
+...+++.|||-|. .|.+++.-|.+.|. .|+++ ++. +.+..+.+++||+||.++.
T Consensus 156 ~l~Gk~vvViGrs~iVG~Pla~lL~~~~a----tVtv~-hs~--------------T~~l~~~~~~ADIvi~avG 211 (285)
T PRK10792 156 DTYGLNAVVVGASNIVGRPMSLELLLAGC----TVTVC-HRF--------------TKNLRHHVRNADLLVVAVG 211 (285)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCC----eEEEE-ECC--------------CCCHHHHHhhCCEEEEcCC
Confidence 34568999999998 99999999988887 89998 654 2245667899999999993
No 384
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=95.07 E-value=0.088 Score=50.16 Aligned_cols=72 Identities=13% Similarity=0.299 Sum_probs=48.2
Q ss_pred CCCC-CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHH-HHHHHHcCcee-ccC---chhhhcCCCEEEE
Q 023866 4 FPIP-AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKV-LSD---NNAVVEYSDVVVF 77 (276)
Q Consensus 4 ~~~~-~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~-~~~l~~~g~~~-~~~---~~~~~~~aDvI~l 77 (276)
.|.+ ++.+||||||.|..|..|+....+.|+ +|.++ +.+++. ...+.+.-+.. ..| ..++++++|+|..
T Consensus 15 ~~~~~~~~k~IgIIGgGqlg~mla~aA~~lG~----~Vi~l-d~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~ 89 (577)
T PLN02948 15 KPVHGVSETVVGVLGGGQLGRMLCQAASQMGI----KVKVL-DPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTV 89 (577)
T ss_pred ccccCCCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEE
Confidence 3444 567899999999999999999999999 99999 877642 22222211111 123 2344667898876
Q ss_pred eeC
Q 023866 78 SVK 80 (276)
Q Consensus 78 av~ 80 (276)
...
T Consensus 90 e~e 92 (577)
T PLN02948 90 EIE 92 (577)
T ss_pred ecC
Confidence 643
No 385
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=95.07 E-value=0.12 Score=47.62 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=32.7
Q ss_pred CCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866 5 PIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (276)
Q Consensus 5 ~~~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (276)
|.+...++|.|||.|.-|.+.|..|.+.|+ +|+++ ++.
T Consensus 128 ~~~~~~~~V~IIG~G~aGl~aA~~l~~~G~----~V~vi-e~~ 165 (449)
T TIGR01316 128 KAPSTHKKVAVIGAGPAGLACASELAKAGH----SVTVF-EAL 165 (449)
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHHHCCC----cEEEE-ecC
Confidence 344567899999999999999999999998 89888 764
No 386
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=95.06 E-value=0.062 Score=46.97 Aligned_cols=67 Identities=16% Similarity=0.210 Sum_probs=50.1
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH---HHHHc-C----cee-------ccCchhhhcCC
Q 023866 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD---AFESI-G----VKV-------LSDNNAVVEYS 72 (276)
Q Consensus 9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~---~l~~~-g----~~~-------~~~~~~~~~~a 72 (276)
+.++|.|-|+ |-+|+.++..|++.|| .|... -|+++..+ .+++. + +.+ .++..++++.|
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY----~V~gt-VR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gc 79 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGY----TVRGT-VRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGC 79 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCC----EEEEE-EcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCC
Confidence 5689999987 9999999999999999 99998 67776532 34441 1 221 23456788999
Q ss_pred CEEEEeeC
Q 023866 73 DVVVFSVK 80 (276)
Q Consensus 73 DvI~lav~ 80 (276)
|.||=+-.
T Consensus 80 dgVfH~As 87 (327)
T KOG1502|consen 80 DGVFHTAS 87 (327)
T ss_pred CEEEEeCc
Confidence 99998653
No 387
>PLN02686 cinnamoyl-CoA reductase
Probab=95.05 E-value=0.07 Score=47.88 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=36.6
Q ss_pred CCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHH
Q 023866 5 PIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF 54 (276)
Q Consensus 5 ~~~~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l 54 (276)
+..+++++|.|.|+ |-+|+.+++.|++.|+ +|++. .|+.++.+.+
T Consensus 48 ~~~~~~k~VLVTGatGfIG~~lv~~L~~~G~----~V~~~-~r~~~~~~~l 93 (367)
T PLN02686 48 GADAEARLVCVTGGVSFLGLAIVDRLLRHGY----SVRIA-VDTQEDKEKL 93 (367)
T ss_pred ccCCCCCEEEEECCchHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHH
Confidence 34456789999976 9999999999999999 99887 7777665544
No 388
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=95.04 E-value=0.069 Score=46.72 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=49.5
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-------------------HHHH----HHHH--cCceec----
Q 023866 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRD----AFES--IGVKVL---- 62 (276)
Q Consensus 12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-------------------~~~~----~l~~--~g~~~~---- 62 (276)
||.+||+|.+|+.++++|...|. .+++++ |.+. .|++ .+++ ..+.+.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gv---g~ItIv-D~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~ 76 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGF---GEIHII-DLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHA 76 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcC---CeEEEE-cCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEec
Confidence 68999999999999999999997 477777 5432 1122 2222 223221
Q ss_pred --cC---chhhhcCCCEEEEeeCcccHHHHHHHH
Q 023866 63 --SD---NNAVVEYSDVVVFSVKPQVDKAAVITE 91 (276)
Q Consensus 63 --~~---~~~~~~~aDvI~lav~~~~~~~vl~~~ 91 (276)
.+ ..+..++.|+||.|+.....+..+.+.
T Consensus 77 ~i~~~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~ 110 (312)
T cd01489 77 NIKDPDFNVEFFKQFDLVFNALDNLAARRHVNKM 110 (312)
T ss_pred cCCCccchHHHHhcCCEEEECCCCHHHHHHHHHH
Confidence 11 235678999999999765555444443
No 389
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.04 E-value=0.11 Score=48.38 Aligned_cols=69 Identities=16% Similarity=0.053 Sum_probs=48.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-H---HHHHHHHcCceec-cCchhhhcCCCEEEEee--Cc
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-K---RRDAFESIGVKVL-SDNNAVVEYSDVVVFSV--KP 81 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~---~~~~l~~~g~~~~-~~~~~~~~~aDvI~lav--~~ 81 (276)
+.+||+|+|+|.=|.+.++.|.+.|. +|+++ |.++ . ..+++.+.+..+. ....+.+.++|+||.+- |+
T Consensus 7 ~~~~v~v~G~G~sG~~~~~~l~~~g~----~v~~~-d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~ 81 (468)
T PRK04690 7 EGRRVALWGWGREGRAAYRALRAHLP----AQALT-LFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISP 81 (468)
T ss_pred CCCEEEEEccchhhHHHHHHHHHcCC----EEEEE-cCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCC
Confidence 45799999999999999999999998 99999 8432 1 2224544333222 22345567899999964 54
Q ss_pred c
Q 023866 82 Q 82 (276)
Q Consensus 82 ~ 82 (276)
.
T Consensus 82 ~ 82 (468)
T PRK04690 82 Y 82 (468)
T ss_pred C
Confidence 4
No 390
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=95.02 E-value=0.038 Score=52.26 Aligned_cols=43 Identities=23% Similarity=0.219 Sum_probs=37.9
Q ss_pred CCCCCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (276)
Q Consensus 1 ~~~~~~~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (276)
|++.+.++...+|.|||+|.-|.++|..|.+.|+ +|.++ +|.+
T Consensus 1 ~~~~~~~~~~~dV~IVGaGp~Gl~lA~~L~~~G~----~v~v~-Er~~ 43 (538)
T PRK06183 1 MAAQHPDAHDTDVVIVGAGPVGLTLANLLGQYGV----RVLVL-ERWP 43 (538)
T ss_pred CCCCCCccCCCCEEEECCCHHHHHHHHHHHHCCC----cEEEE-ecCC
Confidence 7777666777899999999999999999999998 99998 8775
No 391
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=95.01 E-value=0.076 Score=41.27 Aligned_cols=42 Identities=7% Similarity=0.213 Sum_probs=30.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhC-CCCCCCeEEEEeCC-CHHHHHHHHH
Q 023866 11 FILGFIGAGKMAESIAKGVAKS-GVLPPDRICTAVHS-NLKRRDAFES 56 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~-g~~~~~~V~v~~~r-~~~~~~~l~~ 56 (276)
+||+|+|+|+||..+++.+.+. +. ++...+++ +++....+.+
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~----~lvai~d~~~~~~~a~ll~ 44 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDI----EVVAINDLTDPETLAHLLK 44 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCC----EEEEeecCCCHHHHHHHhc
Confidence 5899999999999999988753 33 66654373 6666555544
No 392
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.00 E-value=0.075 Score=45.88 Aligned_cols=77 Identities=22% Similarity=0.310 Sum_probs=57.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-cCce--ec-c---CchhhhcCCCEEEEee--C
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVK--VL-S---DNNAVVEYSDVVVFSV--K 80 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-~g~~--~~-~---~~~~~~~~aDvI~lav--~ 80 (276)
.-||.|||.|..|.-=|+-...-|- +|++. |+|.+|++++.. ++.+ .. + ..++.+.++|+||=+| |
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA----~Vtil-d~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIp 242 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGA----DVTIL-DLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIP 242 (371)
T ss_pred CccEEEECCccccchHHHHHhccCC----eeEEE-ecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEec
Confidence 4589999999999988876666666 99999 999999998887 4543 22 2 2456788999999998 2
Q ss_pred ----cc-cHHHHHHHH
Q 023866 81 ----PQ-VDKAAVITE 91 (276)
Q Consensus 81 ----~~-~~~~vl~~~ 91 (276)
|. ..++.++++
T Consensus 243 gakaPkLvt~e~vk~M 258 (371)
T COG0686 243 GAKAPKLVTREMVKQM 258 (371)
T ss_pred CCCCceehhHHHHHhc
Confidence 22 245666665
No 393
>PRK08163 salicylate hydroxylase; Provisional
Probab=94.97 E-value=0.035 Score=50.11 Aligned_cols=36 Identities=14% Similarity=0.200 Sum_probs=32.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~ 49 (276)
..++|.|||+|..|.++|..|.+.|+ +|+++ +|+++
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~----~v~v~-Er~~~ 38 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGI----KVKLL-EQAAE 38 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCC----cEEEE-eeCcc
Confidence 34789999999999999999999999 99999 88754
No 394
>PRK08017 oxidoreductase; Provisional
Probab=94.96 E-value=0.08 Score=44.49 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=37.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCc
Q 023866 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV 59 (276)
Q Consensus 11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~ 59 (276)
++|-|.|+ |.+|.++++.|.+.|+ +|.++ +|++++.+.+.+.++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~----~v~~~-~r~~~~~~~~~~~~~ 47 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY----RVLAA-CRKPDDVARMNSLGF 47 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHhHHHHhCCC
Confidence 47999998 9999999999999998 99998 999988877665443
No 395
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=94.94 E-value=1.7 Score=35.81 Aligned_cols=161 Identities=15% Similarity=0.208 Sum_probs=87.7
Q ss_pred CceeccCchhhhcCCCEEEEeeC-----cccHHHHHHHHhhccccccCCcccCCCCcccHHHHHHHcC-----CCcEEEE
Q 023866 58 GVKVLSDNNAVVEYSDVVVFSVK-----PQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWTG-----HSRFIRV 127 (276)
Q Consensus 58 g~~~~~~~~~~~~~aDvI~lav~-----~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l~-----~~~vv~~ 127 (276)
|+.++++..++++++|+|+.=.| |+.++.++..+. ...++...-.+ +..++.+.+. +-++...
T Consensus 126 g~~vttddreavedad~iitwlpkg~~qpdiikkfiddip------egaivthacti-pttkf~kifed~gredlnvtsy 198 (343)
T COG4074 126 GIVVTTDDREAVEDADMIITWLPKGGVQPDIIKKFIDDIP------EGAIVTHACTI-PTTKFKKIFEDMGREDLNVTSY 198 (343)
T ss_pred eeEEecCcHhhhcCCCeEEEeccCCCCCccHHHHHHhcCC------CCceEeeeccc-chHHHHHHHHHhCccccceecc
Confidence 56677888999999999999876 344555555551 02233333444 5555555443 2466777
Q ss_pred ecCccccccCcceEeecCCCCCHHHHHHHHHHhhh-cCceEEcCCCCchhhhhhcCchHHHHHHHHHHHHHHHH-HcCCC
Q 023866 128 MPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGS-VGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGV-AAGLP 205 (276)
Q Consensus 128 ~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~-~G~~~~~~e~~~~~~~a~~g~~p~~~~~~~~~l~~~~~-~~Gl~ 205 (276)
||..-.. -+|...+.-| -.+++..+.+-++=+. -|..+.+....+..+.-+++...+.+|.-+-+.-++.. -.|-|
T Consensus 199 hpg~vpe-mkgqvyiaeg-yaseeavn~lyelg~karg~afk~pa~llgpvcdmcsavtaivyagll~yrdavt~ilgap 276 (343)
T COG4074 199 HPGTVPE-MKGQVYIAEG-YASEEAVNALYELGEKARGLAFKVPAYLLGPVCDMCSAVTAIVYAGLLTYRDAVTDILGAP 276 (343)
T ss_pred CCCCCcc-ccCcEEEecc-cccHHHHHHHHHHHHHhhcccccCcHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 7764333 2344434322 2467777666665433 23445555444444333333223333332333334432 46777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 023866 206 RELALGLASQTVLGAASMVTKS 227 (276)
Q Consensus 206 ~~~a~~~~~~~~~g~~~~~~~~ 227 (276)
.+-+.-+....+.....++.+.
T Consensus 277 adfaqmma~eal~qi~~lmee~ 298 (343)
T COG4074 277 ADFAQMMAVEALQQIAKLMEEE 298 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHh
Confidence 6666666667777777776543
No 396
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=94.89 E-value=0.21 Score=43.72 Aligned_cols=86 Identities=16% Similarity=0.168 Sum_probs=64.9
Q ss_pred CCCCC--CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCH--HHHHHHHHcCceeccCchhhhcC--CCEE
Q 023866 3 AFPIP--AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL--KRRDAFESIGVKVLSDNNAVVEY--SDVV 75 (276)
Q Consensus 3 ~~~~~--~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~--~~~~~l~~~g~~~~~~~~~~~~~--aDvI 75 (276)
|+|.. .+..||-+-|. |.-|+..++.+++.|- +|..-+++.. +..+ ..|+.++.+..|+.+. +|+.
T Consensus 20 ~~~~i~~~~~t~v~vqGitg~~g~~h~~~~~~ygt----~iv~GV~Pgkgg~~v~---~~Gvpvy~sv~ea~~~~~~D~a 92 (317)
T PTZ00187 20 SAPRVWVNKNTKVICQGITGKQGTFHTEQAIEYGT----KMVGGVNPKKAGTTHL---KHGLPVFATVKEAKKATGADAS 92 (317)
T ss_pred cCccEEEcCCCeEEEecCCChHHHHHHHHHHHhCC----cEEEEECCCCCCceEe---cCCccccCCHHHHhcccCCCEE
Confidence 44444 35678999998 9999999999999986 6664436553 2221 1388888899998887 9999
Q ss_pred EEeeCcccHHHHHHHHhhcc
Q 023866 76 VFSVKPQVDKAAVITEEAFG 95 (276)
Q Consensus 76 ~lav~~~~~~~vl~~~~~~~ 95 (276)
+++||+..+.+.+.+..+.|
T Consensus 93 vI~VPa~~v~dai~Ea~~aG 112 (317)
T PTZ00187 93 VIYVPPPHAASAIIEAIEAE 112 (317)
T ss_pred EEecCHHHHHHHHHHHHHcC
Confidence 99999999888888774333
No 397
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=94.87 E-value=0.2 Score=42.92 Aligned_cols=100 Identities=11% Similarity=0.139 Sum_probs=66.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEE-eCCCHH--HHHHHHHcCcee------ccCchhhhcC-CC-EEEEe
Q 023866 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTA-VHSNLK--RRDAFESIGVKV------LSDNNAVVEY-SD-VVVFS 78 (276)
Q Consensus 11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~-~~r~~~--~~~~l~~~g~~~------~~~~~~~~~~-aD-vI~la 78 (276)
.||.|.|+ |+||+..++...+.++ ++... +++... ....+...++.+ ..+..++... +| |+|=-
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~~~~----~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~~~d~VvIDF 76 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADAAGL----EIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAKYPELICIDY 76 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhcCCC----EEEeeEccccccccchhhhcccceeeeccccccccHHHHHhhcCCEEEEEC
Confidence 37899998 9999999999888777 76653 254322 222222235555 5566666665 89 77777
Q ss_pred eCcccHHHHHHHHhhccccccCCcccCCCCcccHHHHHHHc
Q 023866 79 VKPQVDKAAVITEEAFGFCCCRSEIERPSGLQRWSRWVEWT 119 (276)
Q Consensus 79 v~~~~~~~vl~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~l 119 (276)
+.|+.+.+.+....+.+ .+++....|. +.++++++.
T Consensus 77 T~P~~~~~n~~~~~~~g----v~~ViGTTG~-~~~~~~~l~ 112 (275)
T TIGR02130 77 THPSAVNDNAAFYGKHG----IPFVMGTTGG-DREALAKLV 112 (275)
T ss_pred CChHHHHHHHHHHHHCC----CCEEEcCCCC-CHHHHHHHH
Confidence 88888777766553323 5666666888 777776653
No 398
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.86 E-value=0.055 Score=37.04 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=28.8
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (276)
Q Consensus 12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (276)
||.|||.|..|.-+|..|.+.|. +|+++ .|++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~----~vtli-~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK----EVTLI-ERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS----EEEEE-ESSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCc----EEEEE-eccc
Confidence 68999999999999999999998 99998 6654
No 399
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=94.85 E-value=0.082 Score=38.47 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH---HcCceeccCchhhhcCCCEEEEeeCcccHHH
Q 023866 21 MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE---SIGVKVLSDNNAVVEYSDVVVFSVKPQVDKA 86 (276)
Q Consensus 21 mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~---~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~ 86 (276)
-+..|++.|.+.|. +|.++ |..-....... ..++....+..++++.+|+||++++...+..
T Consensus 18 p~~~l~~~L~~~g~----~V~~~-DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~f~~ 81 (106)
T PF03720_consen 18 PALELIEELKERGA----EVSVY-DPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDEFRE 81 (106)
T ss_dssp HHHHHHHHHHHTT-----EEEEE--TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GGGGC
T ss_pred HHHHHHHHHHHCCC----EEEEE-CCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHHHhc
Confidence 45678899999998 99999 88765544433 2578888888899999999999998776654
No 400
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.74 E-value=0.5 Score=41.17 Aligned_cols=155 Identities=12% Similarity=0.114 Sum_probs=89.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH---cC------------------ce---eccC
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---IG------------------VK---VLSD 64 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~---~g------------------~~---~~~~ 64 (276)
++.++-++|+|...--+|.-+...|- .++-++ +|-..+.+.+.+ .+ +. ...+
T Consensus 3 ~m~~vLllGtGpvaIQlAv~l~~h~d---~~lg~~-~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd 78 (431)
T COG4408 3 NMLPVLLLGTGPVAIQLAVDLSAHGD---ARLGLY-NRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKD 78 (431)
T ss_pred cccceeEeecCcHHHHHHHHHHhccC---ceeecc-CCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhh
Confidence 57889999999999999999887764 367777 775444444432 11 00 1235
Q ss_pred chhhhcCCCEEEEeeCcccHHHHHHHHhh---ccccccCCcccCCCCcc-cHHHHHHHcC-CCcEEEE------------
Q 023866 65 NNAVVEYSDVVVFSVKPQVDKAAVITEEA---FGFCCCRSEIERPSGLQ-RWSRWVEWTG-HSRFIRV------------ 127 (276)
Q Consensus 65 ~~~~~~~aDvI~lav~~~~~~~vl~~~~~---~~~~~~~~~l~~~~g~~-~~~~l~~~l~-~~~vv~~------------ 127 (276)
.+++..+-|-+|+|||.++..+|+.++.- .++ +..-.+++.-|.. -++.+...++ ++.++..
T Consensus 79 ~a~~~~dwqtlilav~aDaY~dvlqqi~~e~L~~v-k~viLiSptfGsn~lv~~~mnk~~~daeViS~SsY~~dTk~id~ 157 (431)
T COG4408 79 LAQAVGDWQTLILAVPADAYYDVLQQIPWEALPQV-KSVILISPTFGSNLLVQNLMNKAGRDAEVISLSSYYADTKYIDA 157 (431)
T ss_pred HHHhhchhheEEEEeecHHHHHHHhcCCHhHhccc-cEEEEecccccccHHHHHHHhhhCCCceEEEeehhcccceeecc
Confidence 66777889999999999999999988721 011 0011234432220 1233322222 3333332
Q ss_pred -ecCccccccCcceEeecCCCCCHHHHHHHHHHhhhcCceEE
Q 023866 128 -MPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWR 168 (276)
Q Consensus 128 -~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~G~~~~ 168 (276)
-||+.-..+----++.++...+....+.+..+|+..|-.++
T Consensus 158 ~~p~~alTkavKkriYlgs~~~ns~~~e~l~~v~aq~~I~v~ 199 (431)
T COG4408 158 EQPNRALTKAVKKRIYLGSQHGNSGSAEMLTAVLAQHGIDVE 199 (431)
T ss_pred cCcchHHHHHHhHheeeccCCCCChHHHHHHHHHHhcCCceE
Confidence 13322211100123334445566777889999999996543
No 401
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=94.74 E-value=0.043 Score=49.85 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=30.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (276)
.+|.|||.|.+|.+.|..|.+.|+ +|+++ +|+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~----~V~vl-e~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY----QVTVF-DRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC----eEEEE-eCCC
Confidence 589999999999999999999998 99999 8874
No 402
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.72 E-value=0.11 Score=47.97 Aligned_cols=64 Identities=19% Similarity=0.259 Sum_probs=43.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHc-Cce-eccCchhhhcCCCEEEEe
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-GVK-VLSDNNAVVEYSDVVVFS 78 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~-g~~-~~~~~~~~~~~aDvI~la 78 (276)
..+||+|+|+|.-|.+.++.|. .|. +|+++ |.+++....+.+. ... ......+...++|+||.+
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~-~g~----~v~v~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~S 70 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQ-NKY----DVIVY-DDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLS 70 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHh-CCC----EEEEE-CCCCCchHHHHhhhcCceeccCChhHhhCCCEEEEC
Confidence 4579999999999999999888 488 99999 8654433323221 111 112233446689999886
No 403
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=94.66 E-value=0.089 Score=43.94 Aligned_cols=52 Identities=21% Similarity=0.192 Sum_probs=42.6
Q ss_pred EEEeCCCHHHHHHHHH-cCceeccCchhhh-cCCCEEEEeeCcccHHHHHHHHhh
Q 023866 41 CTAVHSNLKRRDAFES-IGVKVLSDNNAVV-EYSDVVVFSVKPQVDKAAVITEEA 93 (276)
Q Consensus 41 ~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~-~~aDvI~lav~~~~~~~vl~~~~~ 93 (276)
.+| |+++++++.+.+ .|+..+++.++++ .+.|+|++|+|++...++.....+
T Consensus 6 aV~-D~~~e~a~~~a~~~g~~~~~d~~eLl~~~vDaVviatp~~~H~e~a~~aL~ 59 (229)
T TIGR03855 6 AVY-DRNPKDAKELAERCGAKIVSDFDEFLPEDVDIVVEAASQEAVKEYAEKILK 59 (229)
T ss_pred EEE-CCCHHHHHHHHHHhCCceECCHHHHhcCCCCEEEECCChHHHHHHHHHHHH
Confidence 466 999999988877 7888888888875 579999999999988888776643
No 404
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=94.65 E-value=0.13 Score=51.68 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=53.3
Q ss_pred CCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH---------------------HHHHHHHcCceec
Q 023866 4 FPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVL 62 (276)
Q Consensus 4 ~~~~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~---------------------~~~~l~~~g~~~~ 62 (276)
+|.-...++|+|||.|.-|.+-|..|.+.|| .|++| .|+.. +.+.+.+.|+.+.
T Consensus 1779 pp~~rtg~~vaiigsgpaglaaadqlnk~gh----~v~vy-er~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~ 1853 (2142)
T KOG0399|consen 1779 PPAFRTGKRVAIIGSGPAGLAAADQLNKAGH----TVTVY-ERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFV 1853 (2142)
T ss_pred CcccccCcEEEEEccCchhhhHHHHHhhcCc----EEEEE-EecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEE
Confidence 3444567899999999999999999999999 99999 77521 2233444677643
Q ss_pred c--------CchhhhcCCCEEEEee
Q 023866 63 S--------DNNAVVEYSDVVVFSV 79 (276)
Q Consensus 63 ~--------~~~~~~~~aDvI~lav 79 (276)
+ +..++-+.-|.|++|+
T Consensus 1854 tn~eigk~vs~d~l~~~~daiv~a~ 1878 (2142)
T KOG0399|consen 1854 TNTEIGKHVSLDELKKENDAIVLAT 1878 (2142)
T ss_pred eeccccccccHHHHhhccCeEEEEe
Confidence 2 3456677899999997
No 405
>PRK05993 short chain dehydrogenase; Provisional
Probab=94.64 E-value=0.12 Score=44.14 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=37.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCc
Q 023866 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV 59 (276)
Q Consensus 11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~ 59 (276)
+++-|.|+ |.+|.++++.|.+.|+ +|++. +|++++.+.+.+.++
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~----~Vi~~-~r~~~~~~~l~~~~~ 49 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGW----RVFAT-CRKEEDVAALEAEGL 49 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHCCc
Confidence 56788887 9999999999999998 99999 999988887766543
No 406
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=94.63 E-value=0.23 Score=43.53 Aligned_cols=47 Identities=17% Similarity=0.283 Sum_probs=41.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV 61 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~ 61 (276)
.+++|+|+|.+|.+-..+...+|- .+|... |.+++|.+..+++|.+-
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~agA---~~IiAv-D~~~~Kl~~A~~fGAT~ 233 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAAGA---GRIIAV-DINPEKLELAKKFGATH 233 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHcCC---ceEEEE-eCCHHHHHHHHhcCCce
Confidence 579999999999999999988875 467777 99999999999999863
No 407
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=94.62 E-value=0.19 Score=46.45 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=31.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (276)
...++|.|||.|.-|.+.|..|.+.|+ +|+++ +++
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~----~V~li-e~~ 172 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGY----DVTIF-EAR 172 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCC----eEEEE-ccC
Confidence 456899999999999999999999998 99998 765
No 408
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=94.61 E-value=0.11 Score=43.85 Aligned_cols=70 Identities=14% Similarity=0.002 Sum_probs=52.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH------cCc----eeccCchhhhcCCCEEEEee
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES------IGV----KVLSDNNAVVEYSDVVVFSV 79 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~------~g~----~~~~~~~~~~~~aDvI~lav 79 (276)
..-..++|.|..+-.......+.-- .-.+|.+| +|+++.++.+.+ ..+ ..+.+.++++..+|+|+.|+
T Consensus 138 S~vL~i~GsG~qA~~hi~ih~~~~p-slreVrIw-nht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~at 215 (333)
T KOG3007|consen 138 SCVLTIFGSGLQAFWHIYIHIKLIP-SLREVRIW-NHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGAT 215 (333)
T ss_pred ceEEEEEcccchhHHHHHHHHHhcc-cceEEEee-cCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecc
Confidence 3457899999999988877665421 13589999 999998877765 123 23566788899999999998
Q ss_pred Cc
Q 023866 80 KP 81 (276)
Q Consensus 80 ~~ 81 (276)
+.
T Consensus 216 ls 217 (333)
T KOG3007|consen 216 LS 217 (333)
T ss_pred cc
Confidence 64
No 409
>PRK05717 oxidoreductase; Validated
Probab=94.60 E-value=0.14 Score=43.10 Aligned_cols=50 Identities=16% Similarity=0.093 Sum_probs=38.2
Q ss_pred CCCCCCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866 1 MDAFPIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (276)
Q Consensus 1 ~~~~~~~~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (276)
|+.+--+.+.+++-|.|. |.+|..+++.|.+.|+ +|.+. +|++++.+.+.
T Consensus 1 ~~~~~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~----~v~~~-~~~~~~~~~~~ 51 (255)
T PRK05717 1 MSEPNPGHNGRVALVTGAARGIGLGIAAWLIAEGW----QVVLA-DLDRERGSKVA 51 (255)
T ss_pred CCCCCcccCCCEEEEeCCcchHHHHHHHHHHHcCC----EEEEE-cCCHHHHHHHH
Confidence 444333345677888875 9999999999999998 99998 88887665543
No 410
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=94.60 E-value=0.11 Score=45.24 Aligned_cols=67 Identities=15% Similarity=0.198 Sum_probs=45.3
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH---HHHH-c----Cce-----ec--cCchhhhcCC
Q 023866 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD---AFES-I----GVK-----VL--SDNNAVVEYS 72 (276)
Q Consensus 9 ~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~---~l~~-~----g~~-----~~--~~~~~~~~~a 72 (276)
+.++|.|.| +|-+|+.+++.|++.|+ +|++. .|+++... .+.. . .+. +. .+..++++++
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGY----TVKAT-VRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGC 77 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCC----EEEEE-EcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCC
Confidence 457899998 59999999999999999 99888 77654322 2211 1 122 11 1233456788
Q ss_pred CEEEEeeC
Q 023866 73 DVVVFSVK 80 (276)
Q Consensus 73 DvI~lav~ 80 (276)
|+||-+..
T Consensus 78 d~Vih~A~ 85 (322)
T PLN02662 78 EGVFHTAS 85 (322)
T ss_pred CEEEEeCC
Confidence 99888753
No 411
>PRK07236 hypothetical protein; Provisional
Probab=94.55 E-value=0.052 Score=48.92 Aligned_cols=37 Identities=11% Similarity=-0.084 Sum_probs=33.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~ 49 (276)
|..++|.|||+|.-|.++|..|.+.|+ +|+++ +|.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~----~v~v~-E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGW----DVDVF-ERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCC----CEEEE-ecCCC
Confidence 567899999999999999999999999 99999 87653
No 412
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.54 E-value=0.057 Score=49.04 Aligned_cols=42 Identities=19% Similarity=0.407 Sum_probs=35.0
Q ss_pred CCCCCC-CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866 3 AFPIPA-ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (276)
Q Consensus 3 ~~~~~~-~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~ 49 (276)
|.|..+ ...+|.|||+|.-|.++|..|.++|+ +|+++ ++.+.
T Consensus 10 ~~~~~~~~~~dV~IvGaG~aGl~~A~~L~~~G~----~v~v~-E~~~~ 52 (415)
T PRK07364 10 TLPSTRSLTYDVAIVGGGIVGLTLAAALKDSGL----RIALI-EAQPA 52 (415)
T ss_pred CCCCCCccccCEEEECcCHHHHHHHHHHhcCCC----EEEEE-ecCCc
Confidence 456654 35689999999999999999999999 99999 87653
No 413
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=94.54 E-value=0.12 Score=43.88 Aligned_cols=64 Identities=20% Similarity=0.194 Sum_probs=51.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceec-------cCchhhhcCCCEEEEeeC
Q 023866 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-------SDNNAVVEYSDVVVFSVK 80 (276)
Q Consensus 11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~~aDvI~lav~ 80 (276)
|+|.+.|+ |.+|+.+...|++.|+ +|.+. .|++++...+. .++.+. .+....++..|.++++.+
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~----~v~~~-~r~~~~~~~~~-~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~ 72 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGH----EVRAA-VRNPEAAAALA-GGVEVVLGDLRDPKSLVAGAKGVDGVLLISG 72 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCC----EEEEE-EeCHHHHHhhc-CCcEEEEeccCCHhHHHHHhccccEEEEEec
Confidence 57889965 9999999999999999 99999 99999988887 555432 123345678899888887
No 414
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=94.52 E-value=0.13 Score=44.91 Aligned_cols=67 Identities=10% Similarity=0.100 Sum_probs=45.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcccHHHHHH
Q 023866 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVDKAAVI 89 (276)
Q Consensus 11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~~~~vl~ 89 (276)
.||+|+|+ |-.|.-+.+.|.+..+ -++.....++. .. ..+..++.+++|++|+|+|.....+...
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~---~el~~l~s~~~----------~~-~~~~~~~~~~~D~vFlalp~~~s~~~~~ 67 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDD---IELLSIAPDRR----------KD-AAERAKLLNAADVAILCLPDDAAREAVS 67 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCC---eEEEEEecccc----------cC-cCCHhHhhcCCCEEEECCCHHHHHHHHH
Confidence 48999987 9999999998876532 23432213321 11 1134455678999999999988777776
Q ss_pred HH
Q 023866 90 TE 91 (276)
Q Consensus 90 ~~ 91 (276)
.+
T Consensus 68 ~~ 69 (310)
T TIGR01851 68 LV 69 (310)
T ss_pred HH
Confidence 65
No 415
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=94.51 E-value=0.036 Score=50.19 Aligned_cols=38 Identities=11% Similarity=0.291 Sum_probs=33.3
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHH
Q 023866 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKR 50 (276)
Q Consensus 8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~ 50 (276)
.+.+||.|+|+ |.+|+.+++.|++.|+ +|++. .|++++
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~----~V~~l-~R~~~~ 96 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGY----NVVAV-AREKSG 96 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-Eechhh
Confidence 45689999986 9999999999999999 99998 888754
No 416
>PRK13984 putative oxidoreductase; Provisional
Probab=94.49 E-value=0.21 Score=47.91 Aligned_cols=69 Identities=23% Similarity=0.217 Sum_probs=49.2
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH---------------------HHHHHHHcCceecc--
Q 023866 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVLS-- 63 (276)
Q Consensus 7 ~~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~---------------------~~~~l~~~g~~~~~-- 63 (276)
+...++|.|||+|..|.+.|..|.+.|+ +|+++ ++.+. ..+.+++.|+.+..
T Consensus 280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~----~v~vi-e~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~ 354 (604)
T PRK13984 280 EKKNKKVAIVGSGPAGLSAAYFLATMGY----EVTVY-ESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNT 354 (604)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCCC----eEEEE-ecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCC
Confidence 3456889999999999999999999999 99988 76531 13345556654321
Q ss_pred ------CchhhhcCCCEEEEeeC
Q 023866 64 ------DNNAVVEYSDVVVFSVK 80 (276)
Q Consensus 64 ------~~~~~~~~aDvI~lav~ 80 (276)
+..+....+|.||+++-
T Consensus 355 ~v~~~~~~~~~~~~yD~vilAtG 377 (604)
T PRK13984 355 RVGKDIPLEELREKHDAVFLSTG 377 (604)
T ss_pred EeCCcCCHHHHHhcCCEEEEEcC
Confidence 11233347999999984
No 417
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=94.46 E-value=0.24 Score=43.17 Aligned_cols=66 Identities=14% Similarity=0.321 Sum_probs=50.2
Q ss_pred CCCCeEEEEccc---HHHHHHHHHHHhCCCCCCCeEEEEeCCC-----HHHHHHHHHcCc--eeccCchhhhcCCCEEEE
Q 023866 8 AESFILGFIGAG---KMAESIAKGVAKSGVLPPDRICTAVHSN-----LKRRDAFESIGV--KVLSDNNAVVEYSDVVVF 77 (276)
Q Consensus 8 ~~~~kIgiIG~G---~mG~~la~~l~~~g~~~~~~V~v~~~r~-----~~~~~~l~~~g~--~~~~~~~~~~~~aDvI~l 77 (276)
.+..||+|+|-| ++..+++..+.+-|. +|.+. ... ++-.+.+++.|. .+++|+.++++++|+|..
T Consensus 148 l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~----~v~~~-~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt 222 (301)
T TIGR00670 148 LDGLKIALVGDLKYGRTVHSLAEALTRFGV----EVYLI-SPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYV 222 (301)
T ss_pred CCCCEEEEEccCCCCcHHHHHHHHHHHcCC----EEEEE-CCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEE
Confidence 356899999995 999999999999998 99887 432 122344444564 457888999999999987
Q ss_pred e
Q 023866 78 S 78 (276)
Q Consensus 78 a 78 (276)
-
T Consensus 223 ~ 223 (301)
T TIGR00670 223 T 223 (301)
T ss_pred C
Confidence 3
No 418
>PRK06180 short chain dehydrogenase; Provisional
Probab=94.44 E-value=0.12 Score=44.29 Aligned_cols=43 Identities=16% Similarity=0.228 Sum_probs=36.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (276)
Q Consensus 9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (276)
.+++|-|.|+ |.+|.++++.|.+.|+ +|++. +|++++.+.+.+
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~----~V~~~-~r~~~~~~~l~~ 46 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGH----RVVGT-VRSEAARADFEA 46 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcC----EEEEE-eCCHHHHHHHHh
Confidence 4567888876 9999999999999999 99999 999988776655
No 419
>PRK08703 short chain dehydrogenase; Provisional
Probab=94.40 E-value=0.13 Score=42.82 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=36.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (276)
Q Consensus 7 ~~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (276)
.++.+++-|.|+ |.+|..+++.|.+.|+ +|.+. +|++++.+.+.
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~----~V~~~-~r~~~~~~~~~ 47 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGA----TVILV-ARHQKKLEKVY 47 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCC----EEEEE-eCChHHHHHHH
Confidence 355678888876 9999999999999998 99999 99988766543
No 420
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=94.33 E-value=0.15 Score=51.55 Aligned_cols=66 Identities=9% Similarity=0.014 Sum_probs=48.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH---------------------HHHHHHHcCceecc----
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVLS---- 63 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~---------------------~~~~l~~~g~~~~~---- 63 (276)
..+||+|||+|.-|.+-|..|.+.|| +|+++ ++... ..+.+++.|+.+..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~----~VtVf-E~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~v 379 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGF----PVTVF-EAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVV 379 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC----eEEEE-eeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEe
Confidence 46899999999999999999999999 99999 76431 12345556765321
Q ss_pred ----Cchhhhc-CCCEEEEee
Q 023866 64 ----DNNAVVE-YSDVVVFSV 79 (276)
Q Consensus 64 ----~~~~~~~-~aDvI~lav 79 (276)
+.+++.+ ..|.||+++
T Consensus 380 G~dit~~~l~~~~yDAV~LAt 400 (944)
T PRK12779 380 GKTATLEDLKAAGFWKIFVGT 400 (944)
T ss_pred ccEEeHHHhccccCCEEEEeC
Confidence 2334433 589999998
No 421
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=94.32 E-value=0.17 Score=42.60 Aligned_cols=50 Identities=16% Similarity=0.135 Sum_probs=38.8
Q ss_pred CCCCCCC-CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866 1 MDAFPIP-AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (276)
Q Consensus 1 ~~~~~~~-~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (276)
|+-.+.. .+.++|-|.|+ |.+|.++++.|.+.|+ +|+++ +|++++.+.+.
T Consensus 1 ~~~~~~~~~~~k~ilItGas~~IG~~la~~l~~~G~----~v~~~-~r~~~~~~~~~ 52 (256)
T PRK06124 1 MSILQRFSLAGQVALVTGSARGLGFEIARALAGAGA----HVLVN-GRNAATLEAAV 52 (256)
T ss_pred CCcccccCCCCCEEEEECCCchHHHHHHHHHHHcCC----eEEEE-eCCHHHHHHHH
Confidence 4444544 35678888876 8999999999999998 99999 99987765543
No 422
>PLN00198 anthocyanidin reductase; Provisional
Probab=94.31 E-value=0.11 Score=45.79 Aligned_cols=40 Identities=20% Similarity=0.245 Sum_probs=33.2
Q ss_pred CCCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHH
Q 023866 6 IPAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR 50 (276)
Q Consensus 6 ~~~~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~ 50 (276)
-|+++++|.|.| +|-+|+.++..|++.|+ +|.+. .|+.+.
T Consensus 5 ~~~~~~~vlItG~~GfIG~~l~~~L~~~g~----~V~~~-~r~~~~ 45 (338)
T PLN00198 5 TPTGKKTACVIGGTGFLASLLIKLLLQKGY----AVNTT-VRDPEN 45 (338)
T ss_pred cCCCCCeEEEECCchHHHHHHHHHHHHCCC----EEEEE-ECCCCC
Confidence 456788999997 69999999999999998 99877 666543
No 423
>PRK05868 hypothetical protein; Validated
Probab=94.30 E-value=0.06 Score=48.40 Aligned_cols=35 Identities=11% Similarity=0.057 Sum_probs=31.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~ 49 (276)
|++|.|||.|.-|.++|..|.+.|+ +|+++ ++.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~----~v~vi-E~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGY----SVTMV-ERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC----CEEEE-cCCCC
Confidence 5789999999999999999999999 99999 87654
No 424
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=94.30 E-value=0.16 Score=42.74 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=36.0
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (276)
Q Consensus 8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (276)
.+.+++.|.|+ |.+|..+++.|++.|+ +|.+. +|++++.+.+.
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~ 51 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGA----EVILN-GRDPAKLAAAA 51 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHH
Confidence 34578999986 9999999999999999 99999 99987765443
No 425
>PRK06847 hypothetical protein; Provisional
Probab=94.27 E-value=0.064 Score=47.97 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=32.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~ 49 (276)
++++|.|||+|.-|.++|..|.+.|+ +|+++ +++++
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~----~v~v~-E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGI----AVDLV-EIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCC----CEEEE-ecCCC
Confidence 46789999999999999999999998 99999 87653
No 426
>PLN02650 dihydroflavonol-4-reductase
Probab=94.27 E-value=0.12 Score=45.84 Aligned_cols=67 Identities=9% Similarity=0.085 Sum_probs=46.2
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH----cC----ce-ecc------CchhhhcC
Q 023866 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IG----VK-VLS------DNNAVVEY 71 (276)
Q Consensus 8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~----~g----~~-~~~------~~~~~~~~ 71 (276)
++.++|.|.|+ |-+|+.++..|++.|+ +|++. .|++++.+.+.. .+ +. +.. +..+++++
T Consensus 3 ~~~k~iLVTGatGfIGs~l~~~L~~~G~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~ 77 (351)
T PLN02650 3 SQKETVCVTGASGFIGSWLVMRLLERGY----TVRAT-VRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRG 77 (351)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHHHHCCC----EEEEE-EcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhC
Confidence 46789999986 9999999999999999 99988 777655443322 11 11 111 22355667
Q ss_pred CCEEEEee
Q 023866 72 SDVVVFSV 79 (276)
Q Consensus 72 aDvI~lav 79 (276)
+|.||-+.
T Consensus 78 ~d~ViH~A 85 (351)
T PLN02650 78 CTGVFHVA 85 (351)
T ss_pred CCEEEEeC
Confidence 88888764
No 427
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=94.24 E-value=0.11 Score=46.70 Aligned_cols=63 Identities=17% Similarity=0.307 Sum_probs=42.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHH-HHHHHHcCcee-ccC---chhhhcCCCEEEE
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKV-LSD---NNAVVEYSDVVVF 77 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~-~~~l~~~g~~~-~~~---~~~~~~~aDvI~l 77 (276)
+++|||||.|..|..|+....+.|+ +|.++ +.++.. ...+.+.-+.. ..| ..++++.||+|..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~----~v~~~-d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGY----KVIVL-DPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC----EEEEE-eCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 4789999999999999999999999 99999 876543 22222211111 122 2345667887644
No 428
>PRK06753 hypothetical protein; Provisional
Probab=94.23 E-value=0.061 Score=48.13 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=31.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~ 49 (276)
|+|.|||+|.-|.+.|..|.+.|+ +|+++ ++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~----~v~v~-E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGH----EVKVF-EKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC----cEEEE-ecCCc
Confidence 689999999999999999999999 99999 87764
No 429
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.22 E-value=0.13 Score=42.21 Aligned_cols=68 Identities=18% Similarity=0.216 Sum_probs=52.1
Q ss_pred CCCCeEEEEcc--cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH-HcCceeccCchhhhcCCCEEEEeeCcccH
Q 023866 8 AESFILGFIGA--GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE-SIGVKVLSDNNAVVEYSDVVVFSVKPQVD 84 (276)
Q Consensus 8 ~~~~kIgiIG~--G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~-~~g~~~~~~~~~~~~~aDvI~lav~~~~~ 84 (276)
.+.++|.|.|| |.+|.++++-|.+.|+ .|+.+ .|+.++..+|. +.|+.... .+ + .+|+.+
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~----~V~At-aR~~e~M~~L~~~~gl~~~k--LD-V---------~~~~~V 67 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGY----LVYAT-ARRLEPMAQLAIQFGLKPYK--LD-V---------SKPEEV 67 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCe----EEEEE-ccccchHhhHHHhhCCeeEE--ec-c---------CChHHH
Confidence 35688999999 9999999999999999 99999 99999998888 47765431 01 1 145666
Q ss_pred HHHHHHHh
Q 023866 85 KAAVITEE 92 (276)
Q Consensus 85 ~~vl~~~~ 92 (276)
.++..++.
T Consensus 68 ~~v~~evr 75 (289)
T KOG1209|consen 68 VTVSGEVR 75 (289)
T ss_pred HHHHHHHh
Confidence 67766663
No 430
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.15 E-value=0.091 Score=45.24 Aligned_cols=53 Identities=13% Similarity=0.162 Sum_probs=43.3
Q ss_pred CCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEee
Q 023866 8 AESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV 79 (276)
Q Consensus 8 ~~~~kIgiIG~G~-mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav 79 (276)
-+.+++.|||-++ .|.+++.-|.+.|. .|+++ +... .+..+.+++||+||.|+
T Consensus 162 l~Gk~vvViGrs~iVGkPla~lL~~~~a----tVtv~-hs~T--------------~~l~~~~~~ADIvv~Av 215 (287)
T PRK14176 162 IEGKNAVIVGHSNVVGKPMAAMLLNRNA----TVSVC-HVFT--------------DDLKKYTLDADILVVAT 215 (287)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHCCC----EEEEE-eccC--------------CCHHHHHhhCCEEEEcc
Confidence 4568999999998 99999999988887 89998 6321 24556788999999987
No 431
>PRK05884 short chain dehydrogenase; Provisional
Probab=94.13 E-value=0.14 Score=42.44 Aligned_cols=41 Identities=12% Similarity=0.214 Sum_probs=35.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (276)
Q Consensus 11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (276)
||+-|.|+ |.+|.++++.|.+.|+ +|++. +|++++.+.+.+
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~----~v~~~-~r~~~~~~~~~~ 42 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGH----KVTLV-GARRDDLEVAAK 42 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHH
Confidence 47888977 9999999999999998 99999 999888776644
No 432
>PRK07326 short chain dehydrogenase; Provisional
Probab=94.12 E-value=0.15 Score=42.29 Aligned_cols=43 Identities=12% Similarity=0.189 Sum_probs=36.0
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (276)
Q Consensus 9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (276)
..++|.|+|+ |.+|..+++.|.+.|+ +|++. +|++++.+.+.+
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~~g~----~V~~~-~r~~~~~~~~~~ 48 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLAEGY----KVAIT-ARDQKELEEAAA 48 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC----EEEEe-eCCHHHHHHHHH
Confidence 3468999976 9999999999999998 99999 999887765543
No 433
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=94.08 E-value=0.16 Score=42.17 Aligned_cols=41 Identities=22% Similarity=0.258 Sum_probs=34.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHH
Q 023866 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF 54 (276)
Q Consensus 9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l 54 (276)
..++|.|.|+ |.+|..+++.|.+.|+ +|+++ +|++++.+.+
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~----~v~~~-~r~~~~~~~~ 45 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGA----KVVIY-DSNEEAAEAL 45 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCChhHHHHH
Confidence 4468999986 9999999999999999 89988 9998775543
No 434
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=94.07 E-value=0.16 Score=48.00 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=47.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEE-eCCCHHHHH---HH----HHc--Cce-------eccCchhhhcCC
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTA-VHSNLKRRD---AF----ESI--GVK-------VLSDNNAVVEYS 72 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~-~~r~~~~~~---~l----~~~--g~~-------~~~~~~~~~~~a 72 (276)
..||++||.|.+|+.++..|...|. . +|.+. .|+-+..+. ++ ++. ++. ...+..++++..
T Consensus 129 ~akVlVlG~Gg~~s~lv~sL~~sG~-~--~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~ev~~~~ 205 (637)
T TIGR03693 129 NAKILAAGSGDFLTKLVRSLIDSGF-P--RFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHEAFEPA 205 (637)
T ss_pred cccEEEEecCchHHHHHHHHHhcCC-C--cEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHHhhcCC
Confidence 4689999999999999999999997 2 45332 155443322 22 221 221 123455778999
Q ss_pred CEEEEeeCccc
Q 023866 73 DVVVFSVKPQV 83 (276)
Q Consensus 73 DvI~lav~~~~ 83 (276)
|+|+..+..+.
T Consensus 206 DiVi~vsDdy~ 216 (637)
T TIGR03693 206 DWVLYVSDNGD 216 (637)
T ss_pred cEEEEECCCCC
Confidence 99999996444
No 435
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=94.06 E-value=0.17 Score=42.89 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=49.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH-HHH----------cCceeccCchhhhcCCCEEE
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-FES----------IGVKVLSDNNAVVEYSDVVV 76 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~-l~~----------~g~~~~~~~~~~~~~aDvI~ 76 (276)
.+..||.|+|.|.+|.+.+..++.+|. ..++.+. |.++++++- ..+ ..+....| -.+.++++++|
T Consensus 18 ~~~~KItVVG~G~VGmAca~siL~k~L--adel~lv-Dv~~dklkGE~MDLqH~s~f~~~~~V~~~~D-y~~sa~S~lvI 93 (332)
T KOG1495|consen 18 FKHNKITVVGVGQVGMACAISILLKGL--ADELVLV-DVNEDKLKGEMMDLQHGSAFLSTPNVVASKD-YSVSANSKLVI 93 (332)
T ss_pred ccCceEEEEccchHHHHHHHHHHHhhh--hhceEEE-ecCcchhhhhhhhhccccccccCCceEecCc-ccccCCCcEEE
Confidence 446899999999999999999998886 3478888 988887642 111 12222223 34567899999
Q ss_pred Eee
Q 023866 77 FSV 79 (276)
Q Consensus 77 lav 79 (276)
+..
T Consensus 94 iTA 96 (332)
T KOG1495|consen 94 ITA 96 (332)
T ss_pred Eec
Confidence 987
No 436
>PRK07060 short chain dehydrogenase; Provisional
Probab=94.04 E-value=0.17 Score=42.09 Aligned_cols=44 Identities=20% Similarity=0.236 Sum_probs=37.9
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (276)
Q Consensus 8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (276)
++.+++.|.|+ |.+|..++..|.+.|+ +|++. +|++++.+.+.+
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~----~V~~~-~r~~~~~~~~~~ 51 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGA----RVVAA-ARNAAALDRLAG 51 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHH
Confidence 34578999997 8999999999999998 99999 999888776655
No 437
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=94.04 E-value=0.16 Score=42.28 Aligned_cols=42 Identities=19% Similarity=0.138 Sum_probs=34.7
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHH
Q 023866 8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF 54 (276)
Q Consensus 8 ~~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l 54 (276)
+..++|.|.| .|.+|.++++.|++.|+ +|++. +|++++.+.+
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~----~V~~~-~r~~~~~~~~ 46 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGA----EVIVV-DICGDDAAAT 46 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHH
Confidence 3457899998 59999999999999998 99999 8987655433
No 438
>PRK07775 short chain dehydrogenase; Provisional
Probab=94.04 E-value=0.22 Score=42.52 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=39.2
Q ss_pred CCCCCCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHH
Q 023866 1 MDAFPIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF 54 (276)
Q Consensus 1 ~~~~~~~~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l 54 (276)
|.-+++..+++.+-|.|+ |.+|..+++.|.+.|+ +|++. .|++++.+.+
T Consensus 1 ~~~~~~~~~~~~vlVtGa~g~iG~~la~~L~~~G~----~V~~~-~r~~~~~~~~ 50 (274)
T PRK07775 1 MPRFEPHPDRRPALVAGASSGIGAATAIELAAAGF----PVALG-ARRVEKCEEL 50 (274)
T ss_pred CCCCCCCCCCCEEEEECCCchHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHH
Confidence 455566667778888885 9999999999999998 89888 8887765544
No 439
>PRK09414 glutamate dehydrogenase; Provisional
Probab=94.03 E-value=0.28 Score=45.07 Aligned_cols=79 Identities=14% Similarity=0.138 Sum_probs=51.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeC----------CCHHHHHHHHH-c-----------CceeccCc
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVH----------SNLKRRDAFES-I-----------GVKVLSDN 65 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~----------r~~~~~~~l~~-~-----------g~~~~~~~ 65 (276)
.+.+||+|.|.|++|+..|+.|.+.|. +|+.+.| .+.+.+...++ . +.... ++
T Consensus 230 l~g~rVaIqGfGnVG~~~A~~L~~~Ga----kVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i-~~ 304 (445)
T PRK09414 230 FEGKRVVVSGSGNVAIYAIEKAQQLGA----KVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYL-EG 304 (445)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeec-CC
Confidence 356899999999999999999999998 7764426 45555444433 1 22211 23
Q ss_pred hhhh-cCCCEEEEeeCcccH-HHHHHHH
Q 023866 66 NAVV-EYSDVVVFSVKPQVD-KAAVITE 91 (276)
Q Consensus 66 ~~~~-~~aDvI~lav~~~~~-~~vl~~~ 91 (276)
.++. .+|||++-|.....+ .+....+
T Consensus 305 ~~i~~~d~DVliPaAl~n~It~~~a~~i 332 (445)
T PRK09414 305 GSPWSVPCDIALPCATQNELDEEDAKTL 332 (445)
T ss_pred ccccccCCcEEEecCCcCcCCHHHHHHH
Confidence 3333 379999999865543 3444444
No 440
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=94.02 E-value=0.22 Score=38.21 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=26.8
Q ss_pred CeEEEEeCCCHHHHHHHHH----cCcee--cc----CchhhhcCCCEEEEeeCc
Q 023866 38 DRICTAVHSNLKRRDAFES----IGVKV--LS----DNNAVVEYSDVVVFSVKP 81 (276)
Q Consensus 38 ~~V~v~~~r~~~~~~~l~~----~g~~~--~~----~~~~~~~~aDvI~lav~~ 81 (276)
.+|.+| +|+....+.+.. .|+++ +. +.++.+++||+|+.++..
T Consensus 29 k~v~Vv-Grs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~ 81 (140)
T cd05212 29 KKVLVV-GRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPK 81 (140)
T ss_pred CEEEEE-CCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCC
Confidence 456666 666655444332 34332 22 556788999999999953
No 441
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.02 E-value=0.19 Score=40.64 Aligned_cols=77 Identities=12% Similarity=0.155 Sum_probs=49.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCC-CCCCeEEEEeCCCHHHHHHHHHcCceeccCc-hhh-----hcCCCEEEEeeCc
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGV-LPPDRICTAVHSNLKRRDAFESIGVKVLSDN-NAV-----VEYSDVVVFSVKP 81 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~-~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~-~~~-----~~~aDvI~lav~~ 81 (276)
.+.|++|||.|++|.-+.-.++++|- +.+.-...+ |...+-+.+..+.|+..+..- .-+ ..+-|+||-++..
T Consensus 3 sk~kvaiigsgni~tdlm~k~lr~g~~le~~~mvgi-dp~sdglaraarlgv~tt~egv~~ll~~p~~~di~lvfdatsa 81 (310)
T COG4569 3 SKRKVAIIGSGNIGTDLMIKILRHGQHLEMAVMVGI-DPQSDGLARAARLGVATTHEGVIGLLNMPEFADIDLVFDATSA 81 (310)
T ss_pred CcceEEEEccCcccHHHHHHHHhcCCcccceeEEcc-CCCccHHHHHHhcCCcchhhHHHHHHhCCCCCCcceEEecccc
Confidence 46799999999999999888888853 332222333 555555666666776543221 111 2456799999976
Q ss_pred ccHHH
Q 023866 82 QVDKA 86 (276)
Q Consensus 82 ~~~~~ 86 (276)
.....
T Consensus 82 ~~h~~ 86 (310)
T COG4569 82 GAHVK 86 (310)
T ss_pred chhhc
Confidence 65443
No 442
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=94.01 E-value=0.18 Score=46.64 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=50.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH---------------------HHHHHHHcCceec-----
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVL----- 62 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~---------------------~~~~l~~~g~~~~----- 62 (276)
..++|+|||+|.-|.+-+.-|.++|| +|+++ ++.+. +++.|.+.|+.+.
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~----~Vtv~-e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~v 196 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGH----DVTVF-ERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRV 196 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCC----eEEEe-CCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceE
Confidence 45899999999999999999999999 99998 76432 1334445565431
Q ss_pred ---cCchhhhcCCCEEEEee
Q 023866 63 ---SDNNAVVEYSDVVVFSV 79 (276)
Q Consensus 63 ---~~~~~~~~~aDvI~lav 79 (276)
-+.+++.++.|.||+++
T Consensus 197 G~~it~~~L~~e~Dav~l~~ 216 (457)
T COG0493 197 GRDITLEELLKEYDAVFLAT 216 (457)
T ss_pred CCcCCHHHHHHhhCEEEEec
Confidence 24567778889999998
No 443
>PRK08013 oxidoreductase; Provisional
Probab=94.01 E-value=0.075 Score=48.21 Aligned_cols=37 Identities=22% Similarity=0.366 Sum_probs=32.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~ 49 (276)
|+...|.|||+|..|.++|..|.+.|+ +|.++ ++.++
T Consensus 1 m~~~dV~IvGaGpaGl~~A~~La~~G~----~v~vi-E~~~~ 37 (400)
T PRK08013 1 MQSVDVVIAGGGMVGLAVACGLQGSGL----RVAVL-EQRVP 37 (400)
T ss_pred CCcCCEEEECcCHHHHHHHHHHhhCCC----EEEEE-eCCCC
Confidence 345689999999999999999999999 99999 87654
No 444
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=94.00 E-value=0.19 Score=39.54 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=39.5
Q ss_pred CCCCeEEEEccc-HHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeC
Q 023866 8 AESFILGFIGAG-KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK 80 (276)
Q Consensus 8 ~~~~kIgiIG~G-~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~ 80 (276)
.+.+++.+||-+ .+|.+++.-|.+.|. .|+++ +... .+.++.+++||+||.++.
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~a----tVt~~-h~~T--------------~~l~~~~~~ADIVVsa~G 88 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGA----TVTIC-HSKT--------------KNLQEITRRADIVVSAVG 88 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT-----EEEEE--TTS--------------SSHHHHHTTSSEEEE-SS
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCC----eEEec-cCCC--------------CcccceeeeccEEeeeec
Confidence 456899999987 599999999999887 88888 6542 244566889999999985
No 445
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.98 E-value=0.1 Score=43.64 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=29.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (276)
...+|.|+|+|.+|+.++.+|.+.|. .+++++ |.+
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GV---g~i~Lv-D~D 44 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGV---GKLTLI-DFD 44 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCC---CEEEEE-CCC
Confidence 45789999999999999999999997 477777 544
No 446
>PRK07454 short chain dehydrogenase; Provisional
Probab=93.95 E-value=0.19 Score=41.81 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=35.2
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (276)
Q Consensus 9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (276)
+++++.|.|+ |.+|..+++.|++.|+ +|++. +|++++.+.+.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~ 47 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGW----DLALV-ARSQDALEALA 47 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHH
Confidence 4567888875 9999999999999998 99999 99987765543
No 447
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=93.95 E-value=0.15 Score=44.30 Aligned_cols=64 Identities=13% Similarity=0.159 Sum_probs=51.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCc
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP 81 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~ 81 (276)
..+|+|||.-.=-..+++.|.+.|+ +|.++ .-+.+ .....|+.+..+..++++++|+|++.+|+
T Consensus 2 ~~~~~v~ggd~r~~~~~~~l~~~G~----~v~~~-g~~~~---~~~~~g~~~~~~~~~~~~~ad~ii~~~p~ 65 (296)
T PRK08306 2 GKHIAVIGGDARQLELIRKLVELGA----KVSLV-GFDQL---DHGFTGATKSSSLEEALSDVDVIILPVPG 65 (296)
T ss_pred CcEEEEEcCcHHHHHHHHHHHHCCC----EEEEE-ecccc---ccccCCceeeccHHHHhccCCEEEECCcc
Confidence 4689999999999999999999999 99987 44321 11235888877778889999999999876
No 448
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=93.94 E-value=0.085 Score=47.51 Aligned_cols=35 Identities=11% Similarity=0.255 Sum_probs=31.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC---CCCCCCeEEEEeCCC
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKS---GVLPPDRICTAVHSN 47 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~---g~~~~~~V~v~~~r~ 47 (276)
|.+.+|.|||+|..|.++|..|.+. |+ +|.++ +|.
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~----~v~v~-E~~ 38 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGL----PVALI-EAF 38 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCC----EEEEE-eCC
Confidence 4667899999999999999999988 99 99999 884
No 449
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=93.91 E-value=0.088 Score=47.46 Aligned_cols=36 Identities=19% Similarity=0.385 Sum_probs=31.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (276)
|+..+|.|||+|.-|.++|..|.+.|+ +|+++ ++.+
T Consensus 1 ~~~~dv~IvGgG~aGl~~A~~L~~~G~----~v~l~-E~~~ 36 (384)
T PRK08849 1 MNKYDIAVVGGGMVGAATALGFAKQGR----SVAVI-EGGE 36 (384)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCCC----cEEEE-cCCC
Confidence 344689999999999999999999999 99999 8653
No 450
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=93.88 E-value=0.088 Score=47.85 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=31.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~ 49 (276)
|+|.|||.|.+|.+.|..|.+.|+ +|.++ ++...
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~----~V~vl-e~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGH----EVTVI-DRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC----EEEEE-eCCCc
Confidence 589999999999999999999998 99999 88743
No 451
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.87 E-value=0.39 Score=42.47 Aligned_cols=77 Identities=16% Similarity=0.100 Sum_probs=51.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccC-----chhhh---cCCCEEEEeeCc
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSD-----NNAVV---EYSDVVVFSVKP 81 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~-----~~~~~---~~aDvI~lav~~ 81 (276)
..+|.|+|+|.+|...++.+...|. .+|++. ++++++.+.+++.|+...-+ ..+.. ...|+||-++-.
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~---~~Vi~~-~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~ 245 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGA---AEIVCA-DVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGH 245 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---cEEEEE-eCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCC
Confidence 4689999999999988887777775 257788 99999999888888643211 11111 126777777753
Q ss_pred -ccHHHHHHH
Q 023866 82 -QVDKAAVIT 90 (276)
Q Consensus 82 -~~~~~vl~~ 90 (276)
..+...+.-
T Consensus 246 ~~~~~~~~~~ 255 (343)
T PRK09880 246 PSSINTCLEV 255 (343)
T ss_pred HHHHHHHHHH
Confidence 234444433
No 452
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.87 E-value=0.22 Score=42.89 Aligned_cols=54 Identities=20% Similarity=0.235 Sum_probs=43.4
Q ss_pred CCCCeEEEEccc-HHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeC
Q 023866 8 AESFILGFIGAG-KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK 80 (276)
Q Consensus 8 ~~~~kIgiIG~G-~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~ 80 (276)
.+.+++.|||-| ..|.+++..|.+.|. .|+++ +.... +..+.+++||+||.|+.
T Consensus 155 l~Gk~vvVvGrs~~VG~Pla~lL~~~gA----tVtv~-hs~t~--------------~l~~~~~~ADIvV~AvG 209 (285)
T PRK14191 155 IKGKDVVIIGASNIVGKPLAMLMLNAGA----SVSVC-HILTK--------------DLSFYTQNADIVCVGVG 209 (285)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCC----EEEEE-eCCcH--------------HHHHHHHhCCEEEEecC
Confidence 356899999999 999999999998887 89988 54322 12456889999999994
No 453
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=93.84 E-value=0.17 Score=42.51 Aligned_cols=41 Identities=17% Similarity=0.326 Sum_probs=35.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (276)
Q Consensus 11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (276)
|+|-|+|+ |.+|..+++.|.+.|+ +|.+. +|++++.+.+.+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~ 42 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH----KVIAT-GRRQERLQELKD 42 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence 57889985 9999999999999998 99999 999988776654
No 454
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=93.78 E-value=0.12 Score=46.02 Aligned_cols=82 Identities=9% Similarity=0.024 Sum_probs=49.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCC-CHHHHHHHHHcCceecc-CchhhhcCCCEEEEeeCcccHHHH
Q 023866 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFESIGVKVLS-DNNAVVEYSDVVVFSVKPQVDKAA 87 (276)
Q Consensus 11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r-~~~~~~~l~~~g~~~~~-~~~~~~~~aDvI~lav~~~~~~~v 87 (276)
++|||+|+ |.+|+.|.+.|.+...++..++.+..++ +..+.-.+......+.. ++.+...+.|++|+|.+.+..+++
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~~~v~~~~~~~~~~~vDivffa~g~~~s~~~ 80 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDIDALKALDIIITCQGGDYTNEI 80 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCcceEEcCcccccccCCCEEEEcCCHHHHHHH
Confidence 48999999 9999999998884433354556555122 11111111111222221 122346789999999988877777
Q ss_pred HHHHh
Q 023866 88 VITEE 92 (276)
Q Consensus 88 l~~~~ 92 (276)
.....
T Consensus 81 ~p~~~ 85 (366)
T TIGR01745 81 YPKLR 85 (366)
T ss_pred HHHHH
Confidence 76663
No 455
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.77 E-value=0.19 Score=42.00 Aligned_cols=42 Identities=24% Similarity=0.333 Sum_probs=36.0
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (276)
Q Consensus 9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (276)
+.+++.|+|+ |.+|..+++.|++.|+ +|++. +|++++.+.+.
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~----~V~~~-~r~~~~~~~~~ 46 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA----RVVVT-DRNEEAAERVA 46 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHH
Confidence 4578999986 9999999999999999 99999 99988766554
No 456
>PRK06057 short chain dehydrogenase; Provisional
Probab=93.76 E-value=0.2 Score=42.20 Aligned_cols=44 Identities=11% Similarity=0.150 Sum_probs=37.4
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (276)
Q Consensus 8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (276)
++.++|-|+|+ |.+|.++++.|.+.|+ +|++. +|++.+.+.+.+
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~----~v~~~-~r~~~~~~~~~~ 49 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGA----TVVVG-DIDPEAGKAAAD 49 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHH
Confidence 56678999988 9999999999999998 99999 998877665543
No 457
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=93.70 E-value=0.2 Score=44.20 Aligned_cols=68 Identities=16% Similarity=0.149 Sum_probs=55.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCccc
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV 83 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~~ 83 (276)
.+++-|.|.|..|..+|..+...|- +|.|+ ..+|-++-++.=.|..+. ...+++..+|++|.++-..+
T Consensus 209 GK~vVV~GYG~vGrG~A~~~rg~GA----~ViVt-EvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TGnkd 276 (420)
T COG0499 209 GKNVVVAGYGWVGRGIAMRLRGMGA----RVIVT-EVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATGNKD 276 (420)
T ss_pred CceEEEecccccchHHHHHhhcCCC----eEEEE-ecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccCCcC
Confidence 4678888999999999999999998 99999 888876554444687765 46788899999999996554
No 458
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=93.68 E-value=0.22 Score=41.80 Aligned_cols=43 Identities=23% Similarity=0.214 Sum_probs=36.3
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866 8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (276)
Q Consensus 8 ~~~~kIgiIG-~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (276)
++.++|-|.| .|.+|..+++.|++.|+ +|.+. +|++++.+.+.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~----~v~~~-~r~~~~~~~~~ 45 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGA----KVVIA-DLNDEAAAAAA 45 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHH
Confidence 3457899998 59999999999999998 99999 99988766543
No 459
>PLN02214 cinnamoyl-CoA reductase
Probab=93.64 E-value=0.22 Score=44.15 Aligned_cols=67 Identities=18% Similarity=0.147 Sum_probs=46.1
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHH-----HHHHc--Ccee-cc------CchhhhcCCC
Q 023866 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD-----AFESI--GVKV-LS------DNNAVVEYSD 73 (276)
Q Consensus 9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~-----~l~~~--g~~~-~~------~~~~~~~~aD 73 (276)
.+++|.|.|+ |-+|+.++..|+++|+ +|++. .|+.++.. .+... .+.. .. +..++++.+|
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d 83 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGY----TVKGT-VRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCD 83 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcC----EEEEE-eCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCC
Confidence 4578999987 9999999999999999 99988 78765421 11111 1221 11 2234567889
Q ss_pred EEEEeeC
Q 023866 74 VVVFSVK 80 (276)
Q Consensus 74 vI~lav~ 80 (276)
+||-+..
T Consensus 84 ~Vih~A~ 90 (342)
T PLN02214 84 GVFHTAS 90 (342)
T ss_pred EEEEecC
Confidence 9988763
No 460
>PRK07538 hypothetical protein; Provisional
Probab=93.62 E-value=0.086 Score=48.00 Aligned_cols=34 Identities=12% Similarity=0.195 Sum_probs=31.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~ 49 (276)
|+|.|||+|.-|.++|..|.++|+ +|+++ +|.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~----~v~v~-E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGI----EVVVF-EAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC----cEEEE-EcCCc
Confidence 689999999999999999999999 99999 88753
No 461
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=93.58 E-value=0.12 Score=46.74 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=31.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (276)
+....|.|||+|..|.++|..|.++|+ +|.++ ++.+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~----~v~li-E~~~ 39 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGL----SVALV-EGRE 39 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCC----EEEEE-eCCC
Confidence 455689999999999999999999999 89998 8753
No 462
>PRK07102 short chain dehydrogenase; Provisional
Probab=93.58 E-value=0.21 Score=41.68 Aligned_cols=41 Identities=24% Similarity=0.355 Sum_probs=34.6
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (276)
Q Consensus 10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (276)
|++|-|.|+ |.+|..+++.|++.|+ +|++. +|++++.+.+.
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~----~Vi~~-~r~~~~~~~~~ 42 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGA----RLYLA-ARDVERLERLA 42 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCC----EEEEE-eCCHHHHHHHH
Confidence 467888874 9999999999999998 99999 99988765543
No 463
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=93.56 E-value=0.25 Score=42.13 Aligned_cols=43 Identities=19% Similarity=0.367 Sum_probs=35.4
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (276)
Q Consensus 8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (276)
++.+++-|.|+ |.+|.+++..|.+.|+ +|.++ +|++++.+.+.
T Consensus 8 ~~~k~vlVtGas~giG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~ 51 (278)
T PRK08277 8 LKGKVAVITGGGGVLGGAMAKELARAGA----KVAIL-DRNQEKAEAVV 51 (278)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHH
Confidence 45567888876 8999999999999998 99999 99887765543
No 464
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=93.55 E-value=0.21 Score=42.37 Aligned_cols=33 Identities=15% Similarity=0.297 Sum_probs=28.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEE-EEeC
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVH 45 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~-v~~~ 45 (276)
.+.+||.|-|.|++|+..++.|.+.|. +|+ ++ |
T Consensus 36 l~g~~vaIqGfGnVG~~~a~~L~e~Ga----kvvaVs-D 69 (254)
T cd05313 36 LKGKRVAISGSGNVAQYAAEKLLELGA----KVVTLS-D 69 (254)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEE-C
Confidence 356899999999999999999999998 777 55 5
No 465
>PRK08267 short chain dehydrogenase; Provisional
Probab=93.52 E-value=0.2 Score=42.20 Aligned_cols=41 Identities=20% Similarity=0.105 Sum_probs=35.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (276)
Q Consensus 11 ~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (276)
+++-|+|+ |.+|..+++.|.+.|+ +|.+. +|++++.+.+.+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~ 43 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW----RVGAY-DINEAGLAALAA 43 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHH
Confidence 56888875 9999999999999998 99999 999988777654
No 466
>PRK14031 glutamate dehydrogenase; Provisional
Probab=93.52 E-value=0.49 Score=43.41 Aligned_cols=78 Identities=17% Similarity=0.196 Sum_probs=51.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEE-EeC----------CCHHHHHH---HHH------------cCcee
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICT-AVH----------SNLKRRDA---FES------------IGVKV 61 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v-~~~----------r~~~~~~~---l~~------------~g~~~ 61 (276)
.+.+||.|.|.|++|...++.|.+.|. +|++ + | .+.+++.. ++. .++..
T Consensus 226 l~g~rVaVQGfGNVG~~aA~~L~e~GA----kVVaVS-D~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~ 300 (444)
T PRK14031 226 LKGKVCLVSGSGNVAQYTAEKVLELGG----KVVTMS-DSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKY 300 (444)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEE-CCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEE
Confidence 356899999999999999999999998 8875 5 6 45544431 111 13332
Q ss_pred ccCchhh-hcCCCEEEEeeCccc-HHHHHHHH
Q 023866 62 LSDNNAV-VEYSDVVVFSVKPQV-DKAAVITE 91 (276)
Q Consensus 62 ~~~~~~~-~~~aDvI~lav~~~~-~~~vl~~~ 91 (276)
. ++++. -.+||++|-|.-... -.+....+
T Consensus 301 i-~~d~~~~~~cDIliPaAl~n~I~~~na~~l 331 (444)
T PRK14031 301 V-EGARPWGEKGDIALPSATQNELNGDDARQL 331 (444)
T ss_pred c-CCcccccCCCcEEeecccccccCHHHHHHH
Confidence 2 23333 257999999875443 34555555
No 467
>PRK12939 short chain dehydrogenase; Provisional
Probab=93.52 E-value=0.23 Score=41.38 Aligned_cols=43 Identities=12% Similarity=0.123 Sum_probs=36.1
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (276)
Q Consensus 8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (276)
++.+++-|+|+ |.+|..+++.|.+.|+ +|.+. +|++++.+.+.
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~----~v~~~-~r~~~~~~~~~ 48 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGA----TVAFN-DGLAAEARELA 48 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHH
Confidence 34578999986 9999999999999998 99998 99988766543
No 468
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=93.52 E-value=0.12 Score=34.32 Aligned_cols=29 Identities=34% Similarity=0.354 Sum_probs=25.9
Q ss_pred EEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866 15 FIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (276)
Q Consensus 15 iIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (276)
|||+|.-|.+.|..|.++|+ +|+++ +++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~----~v~v~-E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGY----RVTVF-EKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTS----EEEEE-ESSS
T ss_pred CEeeCHHHHHHHHHHHHCCC----cEEEE-ecCc
Confidence 79999999999999999998 99999 8764
No 469
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=93.46 E-value=0.36 Score=42.54 Aligned_cols=80 Identities=11% Similarity=0.065 Sum_probs=45.5
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH-HHHHHHHHcC-----------------------ceec--cCc
Q 023866 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIG-----------------------VKVL--SDN 65 (276)
Q Consensus 12 kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~-~~~~~l~~~g-----------------------~~~~--~~~ 65 (276)
||||+|+|++|..+.+.|.+.+.-+.-+|...++... +....+.+++ +.+. .++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~p 80 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPTP 80 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCCh
Confidence 6999999999999999988653000016665534333 2233333211 1111 123
Q ss_pred hhhh---cCCCEEEEeeCcccHHHHHHHH
Q 023866 66 NAVV---EYSDVVVFSVKPQVDKAAVITE 91 (276)
Q Consensus 66 ~~~~---~~aDvI~lav~~~~~~~vl~~~ 91 (276)
.+.- .+.|+||.|+.+....+.....
T Consensus 81 ~~~~w~~~gvDiVie~tG~~~s~e~a~~~ 109 (325)
T TIGR01532 81 EALPWRALGVDLVLDCTGVYGNREQGERH 109 (325)
T ss_pred hhccccccCCCEEEEccchhccHHHHHHH
Confidence 3322 3789999999877655554433
No 470
>PRK05866 short chain dehydrogenase; Provisional
Probab=93.40 E-value=0.25 Score=42.84 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=36.1
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (276)
Q Consensus 9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (276)
+.++|-|.|+ |.+|.++++.|.+.|+ +|++. +|++++.+.+.+
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~----~Vi~~-~R~~~~l~~~~~ 82 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGA----TVVAV-ARREDLLDAVAD 82 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence 3467888876 9999999999999998 99999 999887766543
No 471
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.40 E-value=0.099 Score=48.09 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=29.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (276)
+..++++|||+|.-|.+-|+.|++.|+ +++++ .|+
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~----~v~vf-Er~ 38 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGH----EVVVF-ERT 38 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCC----CceEE-Eec
Confidence 456899999999999999999999998 66665 443
No 472
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=93.34 E-value=0.59 Score=41.11 Aligned_cols=68 Identities=12% Similarity=0.150 Sum_probs=48.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCe-EEEEeCCCHHHHHHHHHcCceec-cC-c---h---hhhc--CCCEEEEe
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDR-ICTAVHSNLKRRDAFESIGVKVL-SD-N---N---AVVE--YSDVVVFS 78 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~-V~v~~~r~~~~~~~l~~~g~~~~-~~-~---~---~~~~--~aDvI~la 78 (276)
..+|.|+|+|.+|...++.+...|. + |++. ++++++.+.+++.|+... +. . . +... ..|+||-+
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~----~~vi~~-~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~ 238 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGA----EDVIGV-DPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIEC 238 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC----CEEEEE-CCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEEC
Confidence 4689999999999999888877887 6 8888 999999988887776421 11 1 0 1111 46777777
Q ss_pred eCcc
Q 023866 79 VKPQ 82 (276)
Q Consensus 79 v~~~ 82 (276)
+...
T Consensus 239 ~g~~ 242 (339)
T cd08239 239 SGNT 242 (339)
T ss_pred CCCH
Confidence 7544
No 473
>PRK07877 hypothetical protein; Provisional
Probab=93.34 E-value=0.4 Score=46.81 Aligned_cols=77 Identities=18% Similarity=0.202 Sum_probs=49.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH------------------HHHHHHHH------cCcee--c-
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL------------------KRRDAFES------IGVKV--L- 62 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~------------------~~~~~l~~------~g~~~--~- 62 (276)
..||+|||+| +|+..+..|..+|.+ .+++++ |.+. .|++.+++ ..+++ .
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvv--G~l~lv-D~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~ 182 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLC--GELRLA-DFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT 182 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCC--CeEEEE-cCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence 5789999999 899999999999831 255655 4321 12222222 12222 1
Q ss_pred -----cCchhhhcCCCEEEEeeCcccHHHHHHH
Q 023866 63 -----SDNNAVVEYSDVVVFSVKPQVDKAAVIT 90 (276)
Q Consensus 63 -----~~~~~~~~~aDvI~lav~~~~~~~vl~~ 90 (276)
.+..++++++|+||-|+..-..+-++.+
T Consensus 183 ~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~ 215 (722)
T PRK07877 183 DGLTEDNVDAFLDGLDVVVEECDSLDVKVLLRE 215 (722)
T ss_pred ccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHH
Confidence 1344567899999999987666655543
No 474
>PRK07588 hypothetical protein; Provisional
Probab=93.34 E-value=0.11 Score=46.98 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=30.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~ 49 (276)
++|.|||.|..|.++|..|.+.|+ +|+++ ++.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~----~v~v~-E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGH----EPTLI-ERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCC----ceEEE-eCCCC
Confidence 589999999999999999999999 89998 87643
No 475
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=93.32 E-value=0.36 Score=48.77 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=31.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (276)
Q Consensus 8 ~~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (276)
...+||.|||.|.-|.+.|..|.+.|+ +|+++ ++.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~----~VtV~-Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGH----PVTVF-ERE 571 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCC----eEEEE-ecc
Confidence 456899999999999999999999999 99998 764
No 476
>PRK07814 short chain dehydrogenase; Provisional
Probab=93.32 E-value=0.3 Score=41.33 Aligned_cols=44 Identities=18% Similarity=0.224 Sum_probs=36.5
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (276)
Q Consensus 8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (276)
++.+++-|.|. |.+|.++++.|++.|+ +|.+. +|++++.+.+.+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~----~Vi~~-~r~~~~~~~~~~ 52 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA----DVLIA-ARTESQLDEVAE 52 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHH
Confidence 45678888876 6899999999999998 99999 999887665543
No 477
>PRK06949 short chain dehydrogenase; Provisional
Probab=93.31 E-value=0.29 Score=41.07 Aligned_cols=44 Identities=18% Similarity=0.299 Sum_probs=37.2
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (276)
Q Consensus 8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (276)
++.++|-|.|+ |.+|..+++.|.+.|+ +|++. +|++++.+.+..
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~----~Vi~~-~r~~~~~~~~~~ 51 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA----KVVLA-SRRVERLKELRA 51 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHH
Confidence 35578999986 9999999999999998 99999 999888766543
No 478
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=93.27 E-value=0.3 Score=44.64 Aligned_cols=65 Identities=20% Similarity=0.312 Sum_probs=48.2
Q ss_pred CCeEEEEcccHHHH-HHHHHHHhCCCCCCCeEEEEeCCCHH-HHHHHHHcCceeccC-chhhhcCCCEEEEee
Q 023866 10 SFILGFIGAGKMAE-SIAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESIGVKVLSD-NNAVVEYSDVVVFSV 79 (276)
Q Consensus 10 ~~kIgiIG~G~mG~-~la~~l~~~g~~~~~~V~v~~~r~~~-~~~~l~~~g~~~~~~-~~~~~~~aDvI~lav 79 (276)
..+|-|||.|..|. ++|.-|++.|| +|..+ |.... ..++|++.|+.+... ..+-+.+.|+||.+.
T Consensus 7 ~~~iHfIGIgG~GMsglA~iL~~~G~----~VsGS-D~~~~~~t~~L~~~G~~i~~gh~~~ni~~~~~VV~s~ 74 (459)
T COG0773 7 LPKIHFIGIGGIGMSGLAEILLNLGY----KVSGS-DLAESPMTQRLEALGIEIFIGHDAENILDADVVVVSN 74 (459)
T ss_pred CceEEEEeeccccHHHHHHHHHhCCC----ceECc-cccccHHHHHHHHCCCeEeCCCCHHHcCCCceEEEec
Confidence 34799999988774 58888999999 99999 76543 467788899886532 233367788888765
No 479
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=93.25 E-value=0.11 Score=45.68 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=28.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~ 49 (276)
.+|.|||+|.-|.++|..|.++|+ +|.++ +|++.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~----~v~i~-E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGI----DVTII-ERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTC----EEEEE-ESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhccc----ccccc-hhccc
Confidence 379999999999999999999999 99999 87654
No 480
>PLN02527 aspartate carbamoyltransferase
Probab=93.25 E-value=0.56 Score=41.03 Aligned_cols=65 Identities=26% Similarity=0.279 Sum_probs=47.8
Q ss_pred CCCeEEEEccc---HHHHHHHHHHHhC-CCCCCCeEEEEeCC-----CHHHHHHHHHcCc--eeccCchhhhcCCCEEEE
Q 023866 9 ESFILGFIGAG---KMAESIAKGVAKS-GVLPPDRICTAVHS-----NLKRRDAFESIGV--KVLSDNNAVVEYSDVVVF 77 (276)
Q Consensus 9 ~~~kIgiIG~G---~mG~~la~~l~~~-g~~~~~~V~v~~~r-----~~~~~~~l~~~g~--~~~~~~~~~~~~aDvI~l 77 (276)
+..||+|||-+ ++..+++..+.+. |. +|+++ .. .++-.+.+++.|. .+++++.++++++|+|..
T Consensus 150 ~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~----~v~~~-~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt 224 (306)
T PLN02527 150 DGIKVGLVGDLANGRTVRSLAYLLAKYEDV----KIYFV-APDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQ 224 (306)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHHhcCCC----EEEEE-CCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEE
Confidence 56899999976 6899999988765 77 88877 43 2233344444454 457888999999999998
Q ss_pred e
Q 023866 78 S 78 (276)
Q Consensus 78 a 78 (276)
-
T Consensus 225 ~ 225 (306)
T PLN02527 225 T 225 (306)
T ss_pred C
Confidence 3
No 481
>PRK12829 short chain dehydrogenase; Provisional
Probab=93.23 E-value=0.25 Score=41.62 Aligned_cols=44 Identities=16% Similarity=0.238 Sum_probs=37.3
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (276)
Q Consensus 8 ~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (276)
++.+++.|+|+ |.+|..+++.|++.|+ +|++. +|+++..+.+.+
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~----~V~~~-~r~~~~~~~~~~ 53 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGA----RVHVC-DVSEAALAATAA 53 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHH
Confidence 35678999976 9999999999999999 99998 998877766544
No 482
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=93.22 E-value=0.13 Score=46.36 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=31.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCH
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~ 48 (276)
+...|.|||+|..|.++|..|.++|+ +|.++ ++++
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~----~v~li-E~~~ 40 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGA----SVALV-APEP 40 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCC----eEEEE-eCCC
Confidence 34579999999999999999999998 99999 8764
No 483
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=93.21 E-value=0.26 Score=41.66 Aligned_cols=43 Identities=12% Similarity=0.238 Sum_probs=36.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (276)
Q Consensus 9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (276)
+.+++-|.|+ |.+|.++++.|.+.|+ +|.+. +|+.++++.+.+
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~l~~ 47 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGA----RVAVL-DKSAAGLQELEA 47 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHh
Confidence 4567778876 8999999999999999 99999 999888777655
No 484
>PRK09242 tropinone reductase; Provisional
Probab=93.20 E-value=0.31 Score=41.03 Aligned_cols=46 Identities=11% Similarity=0.037 Sum_probs=37.7
Q ss_pred CCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866 5 PIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (276)
Q Consensus 5 ~~~~~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (276)
+..++.+++-|.|+ |.+|..++..|.+.|+ +|++. +|++++.+.+.
T Consensus 4 ~~~~~~k~~lItGa~~gIG~~~a~~l~~~G~----~v~~~-~r~~~~~~~~~ 50 (257)
T PRK09242 4 RWRLDGQTALITGASKGIGLAIAREFLGLGA----DVLIV-ARDADALAQAR 50 (257)
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHH
Confidence 34456678888876 8999999999999998 99999 89988766554
No 485
>PLN03075 nicotianamine synthase; Provisional
Probab=93.20 E-value=0.68 Score=40.15 Aligned_cols=80 Identities=14% Similarity=0.107 Sum_probs=48.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH-----cC----ceec-cCchhh---hcCCCEE
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IG----VKVL-SDNNAV---VEYSDVV 75 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~-----~g----~~~~-~~~~~~---~~~aDvI 75 (276)
...+|.+||+|..|..-.-.+ +++.+...++.+ |++++..+..++ .| ++.. .|..+. ..+.|+|
T Consensus 123 ~p~~VldIGcGpgpltaiila--a~~~p~~~~~gi-D~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlV 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLA--KHHLPTTSFHNF-DIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVV 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHH--HhcCCCCEEEEE-eCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEE
Confidence 457899999998876443222 122244478888 999987765543 22 3221 222222 3689999
Q ss_pred EEeeC----cccHHHHHHHH
Q 023866 76 VFSVK----PQVDKAAVITE 91 (276)
Q Consensus 76 ~lav~----~~~~~~vl~~~ 91 (276)
|+.+- ...-..++..+
T Consensus 200 F~~ALi~~dk~~k~~vL~~l 219 (296)
T PLN03075 200 FLAALVGMDKEEKVKVIEHL 219 (296)
T ss_pred EEecccccccccHHHHHHHH
Confidence 99872 23445666666
No 486
>PRK08223 hypothetical protein; Validated
Probab=93.20 E-value=0.15 Score=43.98 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=28.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCC
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~ 47 (276)
..+|.|||+|.+|+.++..|..+|. .+++++ |.+
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGV---G~i~lv-D~D 60 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGI---GKFTIA-DFD 60 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCC---CeEEEE-eCC
Confidence 5789999999999999999999997 466666 543
No 487
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=93.19 E-value=0.27 Score=43.19 Aligned_cols=66 Identities=11% Similarity=0.148 Sum_probs=44.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCC--CCCCCeEEEEeCCCHHHHHHHHH-c---Ccee-c---cC---chhhhcCCCE
Q 023866 9 ESFILGFIGA-GKMAESIAKGVAKSG--VLPPDRICTAVHSNLKRRDAFES-I---GVKV-L---SD---NNAVVEYSDV 74 (276)
Q Consensus 9 ~~~kIgiIG~-G~mG~~la~~l~~~g--~~~~~~V~v~~~r~~~~~~~l~~-~---g~~~-~---~~---~~~~~~~aDv 74 (276)
+.++|.|.|+ |.+|+.+++.|++.| + +|++. +|+..+.+.+.+ . ++.. . .+ ..++++++|+
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~----~V~~~-~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~ 77 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENYNPK----KIIIY-SRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDY 77 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCc----EEEEE-cCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCE
Confidence 4578999976 999999999999876 5 88888 888765544332 1 2221 1 11 2344567899
Q ss_pred EEEee
Q 023866 75 VVFSV 79 (276)
Q Consensus 75 I~lav 79 (276)
||-+.
T Consensus 78 Vih~A 82 (324)
T TIGR03589 78 VVHAA 82 (324)
T ss_pred EEECc
Confidence 98754
No 488
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.19 E-value=0.45 Score=42.14 Aligned_cols=65 Identities=15% Similarity=0.146 Sum_probs=43.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHh-CCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhc--CCCEEEEeeC
Q 023866 10 SFILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSVK 80 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~-~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDvI~lav~ 80 (276)
..++.|+|+|.+|...+..+.+ .|- .+|+++ ++++++++.+++.+..... .+..+ ..|+||=++-
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~---~~vi~~-~~~~~k~~~a~~~~~~~~~--~~~~~~~g~d~viD~~G 231 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPE---SKLVVF-GKHQEKLDLFSFADETYLI--DDIPEDLAVDHAFECVG 231 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCC---CcEEEE-eCcHhHHHHHhhcCceeeh--hhhhhccCCcEEEECCC
Confidence 4689999999999977776554 332 278888 9999998887665543211 11112 3688887775
No 489
>PRK08309 short chain dehydrogenase; Provisional
Probab=93.17 E-value=0.29 Score=39.18 Aligned_cols=41 Identities=10% Similarity=0.141 Sum_probs=34.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (276)
|++.|+|...||..++..|.+.|+ +|.+. +|++++.+.+..
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~G~----~V~v~-~R~~~~~~~l~~ 41 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEKGF----HVSVI-ARREVKLENVKR 41 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHCcC----EEEEE-ECCHHHHHHHHH
Confidence 578899887788899999999999 99998 899887766543
No 490
>PRK07774 short chain dehydrogenase; Provisional
Probab=93.17 E-value=0.29 Score=40.86 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=34.7
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHH
Q 023866 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF 54 (276)
Q Consensus 9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l 54 (276)
+.+++-|.|+ |.+|..+++.|.+.|+ +|++. +|+++..+.+
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~----~vi~~-~r~~~~~~~~ 46 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREGA----SVVVA-DINAEGAERV 46 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHH
Confidence 4578889987 9999999999999998 99999 9987765444
No 491
>PLN00016 RNA-binding protein; Provisional
Probab=93.11 E-value=0.16 Score=45.70 Aligned_cols=78 Identities=19% Similarity=0.117 Sum_probs=50.7
Q ss_pred CCCeEEEE----cc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHH-----------HHHcCcee-ccCch---hh
Q 023866 9 ESFILGFI----GA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-----------FESIGVKV-LSDNN---AV 68 (276)
Q Consensus 9 ~~~kIgiI----G~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~-----------l~~~g~~~-~~~~~---~~ 68 (276)
.++||.|+ |+ |.+|+.+++.|++.|| +|++. +|+++..+. +...|+.. ..|.. ++
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~----~V~~l-~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~ 125 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGH----EVTLF-TRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSK 125 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCC----EEEEE-ecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhh
Confidence 35789999 65 9999999999999999 99999 887654322 22234442 22332 23
Q ss_pred h--cCCCEEEEeeCcc--cHHHHHHHH
Q 023866 69 V--EYSDVVVFSVKPQ--VDKAAVITE 91 (276)
Q Consensus 69 ~--~~aDvI~lav~~~--~~~~vl~~~ 91 (276)
+ ..+|+||-+.... ....+++..
T Consensus 126 ~~~~~~d~Vi~~~~~~~~~~~~ll~aa 152 (378)
T PLN00016 126 VAGAGFDVVYDNNGKDLDEVEPVADWA 152 (378)
T ss_pred hccCCccEEEeCCCCCHHHHHHHHHHH
Confidence 3 3689998875322 244555444
No 492
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=93.09 E-value=0.27 Score=42.38 Aligned_cols=74 Identities=12% Similarity=0.121 Sum_probs=56.0
Q ss_pred eEEEE-cccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCchhhhcCCCEEEEeeCcc--cHHHHH
Q 023866 12 ILGFI-GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ--VDKAAV 88 (276)
Q Consensus 12 kIgiI-G~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDvI~lav~~~--~~~~vl 88 (276)
|+++| |.|..|..-+++|...|- +|++. ..+|=.+-+..-.|..++ ..+|++++.|+++.++--. ...+-+
T Consensus 215 Kv~Vv~GYGdVGKgCaqaLkg~g~----~VivT-EiDPI~ALQAaMeG~~V~-tm~ea~~e~difVTtTGc~dii~~~H~ 288 (434)
T KOG1370|consen 215 KVAVVCGYGDVGKGCAQALKGFGA----RVIVT-EIDPICALQAAMEGYEVT-TLEEAIREVDIFVTTTGCKDIITGEHF 288 (434)
T ss_pred cEEEEeccCccchhHHHHHhhcCc----EEEEe-ccCchHHHHHHhhccEee-eHHHhhhcCCEEEEccCCcchhhHHHH
Confidence 55555 999999999999998887 89998 888765444434687765 5778999999999998433 345556
Q ss_pred HHH
Q 023866 89 ITE 91 (276)
Q Consensus 89 ~~~ 91 (276)
.++
T Consensus 289 ~~m 291 (434)
T KOG1370|consen 289 DQM 291 (434)
T ss_pred HhC
Confidence 655
No 493
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=93.08 E-value=0.28 Score=41.22 Aligned_cols=42 Identities=21% Similarity=0.257 Sum_probs=35.2
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH
Q 023866 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (276)
Q Consensus 9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~ 55 (276)
+.+++-|.|+ |.+|..++..|++.|+ +|.+. +|++++.+.+.
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G~----~v~~~-~r~~~~~~~~~ 48 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAGA----AVAIA-DLNQDGANAVA 48 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC----eEEEE-eCChHHHHHHH
Confidence 4567888887 9999999999999998 99988 99987665443
No 494
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=93.07 E-value=0.27 Score=43.00 Aligned_cols=65 Identities=22% Similarity=0.265 Sum_probs=43.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHH---H-cC----cee-----c--cCchhhhcCCC
Q 023866 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE---S-IG----VKV-----L--SDNNAVVEYSD 73 (276)
Q Consensus 10 ~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~---~-~g----~~~-----~--~~~~~~~~~aD 73 (276)
.++|-|.|+ |-+|+.++..|++.|+ +|++. .|++++.+... . .+ +.. . .+..++++.+|
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d 79 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY----TINAT-VRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCE 79 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC----EEEEE-EcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCC
Confidence 478889985 9999999999999999 99887 77765433221 1 11 211 1 11234566789
Q ss_pred EEEEee
Q 023866 74 VVVFSV 79 (276)
Q Consensus 74 vI~lav 79 (276)
+||-+.
T Consensus 80 ~vih~A 85 (325)
T PLN02989 80 TVFHTA 85 (325)
T ss_pred EEEEeC
Confidence 888876
No 495
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=93.07 E-value=0.55 Score=42.89 Aligned_cols=67 Identities=16% Similarity=0.173 Sum_probs=49.4
Q ss_pred CCCCeEEEEccc---HHHHHHHHHHHhC-CCCCCCeEEEEeCCC-----HHHHHHHHHcC--ceeccCchhhhcCCCEEE
Q 023866 8 AESFILGFIGAG---KMAESIAKGVAKS-GVLPPDRICTAVHSN-----LKRRDAFESIG--VKVLSDNNAVVEYSDVVV 76 (276)
Q Consensus 8 ~~~~kIgiIG~G---~mG~~la~~l~~~-g~~~~~~V~v~~~r~-----~~~~~~l~~~g--~~~~~~~~~~~~~aDvI~ 76 (276)
.+..||+|+|-+ ++..+++..+... |. +|+++ ... ++-.+.+.+.| +.+++++.++++++|+|.
T Consensus 239 l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~----~v~l~-~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVY 313 (429)
T PRK11891 239 VDGAHIALVGDLKYGRTVHSLVKLLALYRGL----KFTLV-SPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVY 313 (429)
T ss_pred cCCCEEEEECcCCCChHHHHHHHHHHHhcCC----EEEEE-CCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEE
Confidence 356899999994 9999999987765 87 88887 432 22234444445 456788899999999999
Q ss_pred Eee
Q 023866 77 FSV 79 (276)
Q Consensus 77 lav 79 (276)
...
T Consensus 314 t~~ 316 (429)
T PRK11891 314 ATR 316 (429)
T ss_pred EcC
Confidence 843
No 496
>PRK07825 short chain dehydrogenase; Provisional
Probab=93.07 E-value=0.3 Score=41.53 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=36.6
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHH
Q 023866 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (276)
Q Consensus 9 ~~~kIgiIG~-G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~ 56 (276)
+.++|-|.|+ |.+|..+++.|.+.|+ +|.+. +|++++.+.+.+
T Consensus 4 ~~~~ilVtGasggiG~~la~~l~~~G~----~v~~~-~r~~~~~~~~~~ 47 (273)
T PRK07825 4 RGKVVAITGGARGIGLATARALAALGA----RVAIG-DLDEALAKETAA 47 (273)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence 4568888887 9999999999999998 99999 999988776543
No 497
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=93.06 E-value=0.62 Score=41.03 Aligned_cols=66 Identities=17% Similarity=0.145 Sum_probs=47.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCceeccCc-hhhhcCCCEEEEeeC
Q 023866 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN-NAVVEYSDVVVFSVK 80 (276)
Q Consensus 10 ~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~~~~~-~~~~~~aDvI~lav~ 80 (276)
..+|.|.|+|.+|...++.....|. +|++. ++++++.+.+++.|+...-+. ....+..|+++.++.
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~~G~----~vi~~-~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~ 232 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALAQGA----TVHVM-TRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAP 232 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHCCC----eEEEE-eCChHHHHHHHHhCCceeccccccCcccceEEEECCC
Confidence 4589999999999988877777776 78888 999999998888887532221 111234677776653
No 498
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=93.00 E-value=0.85 Score=38.15 Aligned_cols=78 Identities=15% Similarity=0.126 Sum_probs=52.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHHHHHHHHHcCcee-cc--C--chhh-----hcCCCEEEEe
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LS--D--NNAV-----VEYSDVVVFS 78 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~~~~~l~~~g~~~-~~--~--~~~~-----~~~aDvI~la 78 (276)
...+|.|.|+|.+|.+++..+...|. +|++. ++++++.+.+++.|... .. + ..+. -...|++|-+
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~----~v~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 208 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGA----RVIVT-DRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDA 208 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC----eEEEE-cCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEEC
Confidence 34689999999999999988888887 89988 99988888877665431 11 1 1111 1357888877
Q ss_pred eCc-ccHHHHHHHH
Q 023866 79 VKP-QVDKAAVITE 91 (276)
Q Consensus 79 v~~-~~~~~vl~~~ 91 (276)
+.. ......+..+
T Consensus 209 ~~~~~~~~~~~~~l 222 (271)
T cd05188 209 VGGPETLAQALRLL 222 (271)
T ss_pred CCCHHHHHHHHHhc
Confidence 765 3444444433
No 499
>PRK07045 putative monooxygenase; Reviewed
Probab=92.98 E-value=0.13 Score=46.37 Aligned_cols=36 Identities=11% Similarity=0.150 Sum_probs=32.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCeEEEEeCCCHH
Q 023866 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (276)
Q Consensus 9 ~~~kIgiIG~G~mG~~la~~l~~~g~~~~~~V~v~~~r~~~ 49 (276)
+..+|.|||+|.-|.+.|..|.++|+ +|.++ ++.++
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~----~v~v~-E~~~~ 39 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGH----SVTVV-ERAAR 39 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCC----cEEEE-eCCCc
Confidence 45789999999999999999999999 99999 87664
No 500
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=92.97 E-value=0.13 Score=46.90 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=30.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC-CCCCCeEEEEeCCCHH
Q 023866 11 FILGFIGAGKMAESIAKGVAKSG-VLPPDRICTAVHSNLK 49 (276)
Q Consensus 11 ~kIgiIG~G~mG~~la~~l~~~g-~~~~~~V~v~~~r~~~ 49 (276)
+||.|||+|.-|.++|..|.++| + +|+|+ +|+++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~----~v~v~-Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHL----NVQLF-EAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCC----CEEEE-ecCCc
Confidence 68999999999999999999887 5 89999 88754
Done!