Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>023868
MLQTHHLLSLNFPFTVSHHPQKLNFLQKPTISLSAFPRRRPLIEPYCLAQAQEPTTNITA
PTTSEEGPVELPQSIFATTDEPSSLQVATSVLLTGAISVFLFRALRRRAKRAKELKFRSS
GAKKSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLTAGVIAIILYKFTTTIEAALNR
QTISDNFSVRQITITIRTIVNGLCYLATFVFGINSVGLFLYSGQLALNSFTEDSSSSKET
ENIGEQQSGSLNSTAENATDTELNSGKEDQSSDSRQ

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  023868
        (276 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2083676 - symbol:AT3G15110 "AT3G15110" species...   515  2.0e-49   1


>TAIR|locus:2083676 [details] [associations]
            symbol:AT3G15110 "AT3G15110" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009535
            EMBL:BT024491 IPI:IPI00547061 RefSeq:NP_566500.1 UniGene:At.39107
            STRING:Q2HIU0 PaxDb:Q2HIU0 PRIDE:Q2HIU0 EnsemblPlants:AT3G15110.1
            GeneID:820741 KEGG:ath:AT3G15110 TAIR:At3g15110 eggNOG:NOG258586
            HOGENOM:HOG000005768 InParanoid:Q2HIU0 OMA:GICYLAT PhylomeDB:Q2HIU0
            ProtClustDB:CLSN2688392 Genevestigator:Q2HIU0 InterPro:IPR021434
            Pfam:PF11282 Uniprot:Q2HIU0
        Length = 266

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 134/285 (47%), Positives = 168/285 (58%)

Query:     1 MLQTHHLLSLNFPFTVSHHPQKLNFLQKPTISLSAFPRRRPLIEPYCLAQAQEPTTNITA 60
             +LQ+H  L  + P+ +   P +L     P  SLS+F R RP I    L+  +E   ++  
Sbjct:     3 VLQSHQCL-FSLPYRL--RPTRLI---SPIHSLSSFTRIRPGI--IRLSAVKE-IADVAE 53

Query:    61 PTTSEEGPVELP----------QSIFATTDEPSSLQVATSVLLTGAISVXXXXXXXXXXX 110
                 E+GP+ELP           SIFAT+D+P+ LQ+ATSVLLTGAI+V           
Sbjct:    54 --VEEDGPIELPTSSTSPFSSTNSIFATSDDPTPLQLATSVLLTGAITVFLIRSVRRRAK 111

Query:   111 XXXXXXXXSSGAKKSLKDEALDNLKALGSSSIDA-KGPPSPVQALLGGLTAGVIAIILYK 169
                     S+GAKKSLK+EA+DNLKAL S+ I+     PS  QA LG + AGVIA+ILYK
Sbjct:   112 RAKELTFRSTGAKKSLKEEAMDNLKALSSTPIEGGNSTPSAAQAFLGAIAAGVIALILYK 171

Query:   170 FTTTIEAALNRQTISDNFSVRQXXXXXXXXVNGLCYLATFVFGINSVGLFLYSGQLALNS 229
             FT T+E+ LNRQTISDNFSVRQ        +NG+CYLATFVFG+N+ GL LYSGQLA N 
Sbjct:   172 FTVTVESGLNRQTISDNFSVRQITVTVRTIINGICYLATFVFGLNAFGLLLYSGQLAFN- 230

Query:   230 FTEDSSSS--KETENIGEQQSGSLNSTAENATDTELNSGKEDQSS 272
               EDS+    K T   G+  SG  NS        E+N   EDQSS
Sbjct:   231 --EDSAEENMKATTQPGDSSSGD-NS--------EVNKSNEDQSS 264


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.126   0.343    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      276       249   0.00080  114 3  11 23  0.39    34
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  557 (59 KB)
  Total size of DFA:  142 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.64u 0.17s 21.81t   Elapsed:  00:00:01
  Total cpu time:  21.64u 0.17s 21.81t   Elapsed:  00:00:01
  Start:  Sat May 11 00:43:38 2013   End:  Sat May 11 00:43:39 2013

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