Query 023868
Match_columns 276
No_of_seqs 76 out of 78
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 07:14:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023868.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023868hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11282 DUF3082: Protein of u 100.0 1.8E-31 3.9E-36 208.4 11.8 81 147-227 1-82 (82)
2 PF03899 ATP_synt_I: ATP synth 85.5 13 0.00028 27.7 9.5 68 151-219 27-96 (100)
3 PF02990 EMP70: Endomembrane p 71.9 12 0.00026 37.5 6.8 75 90-171 210-284 (521)
4 PRK11281 hypothetical protein; 71.5 26 0.00056 39.1 9.7 81 151-233 836-930 (1113)
5 PF01102 Glycophorin_A: Glycop 70.0 4.2 9E-05 34.5 2.7 24 87-113 73-96 (122)
6 PF06305 DUF1049: Protein of u 68.1 12 0.00027 26.8 4.5 21 65-88 3-23 (68)
7 PRK12772 bifunctional flagella 66.6 1.7E+02 0.0037 30.5 15.2 33 82-114 213-245 (609)
8 PF01384 PHO4: Phosphate trans 66.5 22 0.00048 33.7 7.1 71 154-224 127-207 (326)
9 COG1963 Uncharacterized protei 57.4 67 0.0014 28.7 7.8 25 147-171 127-151 (153)
10 PF06679 DUF1180: Protein of u 57.2 9.3 0.0002 33.8 2.6 37 85-121 94-133 (163)
11 smart00831 Cation_ATPase_N Cat 56.5 39 0.00084 23.8 5.3 36 125-160 10-46 (64)
12 COG1862 YajC Preprotein transl 56.2 17 0.00037 29.7 3.8 34 82-115 6-40 (97)
13 TIGR03142 cytochro_ccmI cytoch 53.0 74 0.0016 25.8 7.0 22 149-170 92-113 (117)
14 PF10011 DUF2254: Predicted me 53.0 74 0.0016 30.6 8.1 70 153-225 9-80 (371)
15 COG3192 EutH Ethanolamine util 53.0 42 0.00092 33.4 6.5 30 199-228 205-234 (389)
16 PF14012 DUF4229: Protein of u 52.1 34 0.00074 26.1 4.6 31 86-116 35-65 (69)
17 PF05454 DAG1: Dystroglycan (D 51.7 4.9 0.00011 38.4 0.0 47 84-133 152-201 (290)
18 PF10011 DUF2254: Predicted me 51.1 82 0.0018 30.3 8.1 84 147-230 43-153 (371)
19 KOG1277 Endosomal membrane pro 48.9 30 0.00065 36.1 5.0 27 88-114 234-261 (593)
20 PRK13955 mscL large-conductanc 48.7 60 0.0013 28.0 6.1 25 83-107 68-92 (130)
21 PF06295 DUF1043: Protein of u 48.4 21 0.00045 29.8 3.2 30 87-116 2-31 (128)
22 PF03918 CcmH: Cytochrome C bi 47.5 6.2 0.00013 34.0 0.0 38 90-136 108-145 (148)
23 PRK10929 putative mechanosensi 46.5 1.5E+02 0.0033 33.3 10.2 85 146-232 829-926 (1109)
24 PF11460 DUF3007: Protein of u 46.2 59 0.0013 27.3 5.5 42 94-136 47-100 (104)
25 TIGR00220 mscL large conductan 45.3 70 0.0015 27.4 6.0 28 83-111 70-97 (127)
26 PF02417 Chromate_transp: Chro 45.1 1.9E+02 0.0042 24.5 13.3 112 84-213 2-130 (169)
27 PF10779 XhlA: Haemolysin XhlA 44.5 19 0.00041 27.1 2.2 17 151-167 54-70 (71)
28 PF12273 RCR: Chitin synthesis 42.9 28 0.00061 28.6 3.2 6 90-95 6-11 (130)
29 PRK11677 hypothetical protein; 42.8 39 0.00084 29.1 4.1 29 88-116 7-35 (134)
30 PF03381 CDC50: LEM3 (ligand-e 41.8 36 0.00079 31.7 4.1 36 197-233 241-276 (278)
31 PLN02598 omega-6 fatty acid de 39.6 1.9E+02 0.004 29.0 8.8 54 106-164 56-110 (421)
32 PF11862 DUF3382: Domain of un 38.5 1.3E+02 0.0027 24.1 6.1 25 89-113 44-68 (101)
33 PF04145 Ctr: Ctr copper trans 37.9 91 0.002 24.9 5.4 37 75-111 15-53 (144)
34 COG4325 Predicted membrane pro 37.7 1.3E+02 0.0028 31.0 7.3 21 207-227 165-185 (464)
35 TIGR00927 2A1904 K+-dependent 37.0 2.3E+02 0.005 32.2 9.6 42 70-111 441-489 (1096)
36 PRK06531 yajC preprotein trans 35.9 45 0.00097 28.0 3.3 19 96-114 14-32 (113)
37 KOG2629 Peroxisomal membrane a 34.9 1.4E+02 0.0031 29.2 7.0 20 157-176 90-109 (300)
38 PF11377 DUF3180: Protein of u 34.8 2.2E+02 0.0048 24.1 7.4 27 83-109 29-55 (138)
39 TIGR02854 spore_II_GA sigma-E 33.8 82 0.0018 29.5 5.1 23 146-168 29-51 (288)
40 COG2245 Predicted membrane pro 33.1 1.9E+02 0.004 26.6 7.0 70 156-229 97-167 (182)
41 PRK10334 mechanosensitive chan 32.7 4.2E+02 0.0092 24.8 10.3 51 155-206 32-83 (286)
42 PF13807 GNVR: G-rich domain o 32.6 2.1E+02 0.0045 21.6 6.2 25 146-170 55-79 (82)
43 PTZ00382 Variant-specific surf 32.0 11 0.00024 30.3 -0.8 6 91-96 76-81 (96)
44 PF04695 Pex14_N: Peroxisomal 31.5 40 0.00087 28.2 2.4 24 152-175 109-132 (136)
45 PF03616 Glt_symporter: Sodium 31.4 5E+02 0.011 25.3 10.1 21 90-110 167-187 (368)
46 PRK14740 kdbF potassium-transp 31.1 63 0.0014 21.8 2.8 21 152-172 5-25 (29)
47 COG4280 Predicted membrane pro 31.1 88 0.0019 29.6 4.7 28 82-110 63-90 (236)
48 PF01594 UPF0118: Domain of un 30.6 4E+02 0.0087 23.9 10.5 40 187-226 182-221 (327)
49 COG5500 Predicted integral mem 30.4 89 0.0019 27.8 4.4 49 150-198 6-55 (159)
50 PRK06287 cobalt transport prot 30.2 51 0.0011 27.1 2.7 26 83-108 79-104 (107)
51 PF02535 Zip: ZIP Zinc transpo 30.0 4E+02 0.0087 23.7 11.4 24 87-110 7-30 (317)
52 PRK13954 mscL large-conductanc 29.9 1.3E+02 0.0028 25.7 5.2 25 83-107 65-89 (119)
53 PF01384 PHO4: Phosphate trans 29.6 5E+02 0.011 24.7 11.4 26 89-114 128-153 (326)
54 COG3088 CcmH Uncharacterized p 29.4 69 0.0015 28.6 3.6 41 88-138 110-150 (153)
55 PRK10983 putative inner membra 29.4 3.5E+02 0.0077 26.1 8.7 37 188-224 203-239 (368)
56 PF03699 UPF0182: Uncharacteri 29.1 5.7E+02 0.012 28.0 10.8 55 153-211 204-262 (774)
57 KOG3225 Mitochondrial import i 29.1 91 0.002 28.3 4.3 79 151-235 44-122 (168)
58 KOG3491 Predicted membrane pro 28.9 1.3E+02 0.0028 23.5 4.5 31 142-174 31-61 (65)
59 PF06724 DUF1206: Domain of Un 28.8 1.1E+02 0.0023 22.7 4.1 65 92-178 9-73 (73)
60 PF11821 DUF3341: Protein of u 28.8 3.9E+02 0.0084 23.8 8.2 40 146-185 49-91 (173)
61 PF08114 PMP1_2: ATPase proteo 28.4 1E+02 0.0022 22.4 3.7 20 89-108 17-36 (43)
62 PF07857 DUF1632: CEO family ( 28.4 3.4E+02 0.0074 25.5 8.1 31 146-176 52-96 (254)
63 PF14316 DUF4381: Domain of un 28.0 1.3E+02 0.0028 25.1 4.9 29 82-110 19-47 (146)
64 PF11368 DUF3169: Protein of u 28.0 2.8E+02 0.0062 25.0 7.4 56 151-211 13-68 (248)
65 PF00690 Cation_ATPase_N: Cati 28.0 1.1E+02 0.0023 22.2 3.8 35 127-161 23-57 (69)
66 PRK13415 flagella biosynthesis 27.8 67 0.0015 30.0 3.4 30 84-113 68-97 (219)
67 PRK05585 yajC preprotein trans 27.3 73 0.0016 26.2 3.2 15 101-115 35-49 (106)
68 PRK11114 cellulose synthase re 27.2 77 0.0017 33.5 4.1 26 87-112 728-753 (756)
69 PF01569 PAP2: PAP2 superfamil 27.1 41 0.00089 25.6 1.6 30 80-109 99-128 (129)
70 PF03419 Peptidase_U4: Sporula 27.1 1.5E+02 0.0033 27.3 5.6 22 146-167 29-50 (293)
71 PF08369 PCP_red: Proto-chloro 26.9 96 0.0021 21.9 3.3 29 105-134 16-44 (45)
72 PF13268 DUF4059: Protein of u 26.4 65 0.0014 25.6 2.6 25 90-114 18-42 (72)
73 PRK05274 2-keto-3-deoxyglucona 26.3 64 0.0014 31.2 3.1 40 75-114 281-320 (326)
74 COG1585 Membrane protein impli 26.3 48 0.001 28.3 2.0 34 81-114 45-78 (140)
75 TIGR00739 yajC preprotein tran 26.1 67 0.0014 25.3 2.7 16 100-115 19-34 (84)
76 PF06697 DUF1191: Protein of u 26.0 47 0.001 31.9 2.1 30 87-116 219-250 (278)
77 PRK05886 yajC preprotein trans 25.3 87 0.0019 26.2 3.3 10 105-114 22-31 (109)
78 PRK09400 secE preprotein trans 25.1 3.1E+02 0.0066 20.7 6.7 47 101-173 13-59 (61)
79 COG2851 CitM H+/citrate sympor 24.7 6.1E+02 0.013 26.2 9.5 34 83-117 179-212 (433)
80 PF11346 DUF3149: Protein of u 24.6 1.3E+02 0.0027 21.6 3.5 32 82-113 10-41 (42)
81 PRK10714 undecaprenyl phosphat 24.5 5.8E+02 0.013 23.8 10.7 30 83-112 132-171 (325)
82 PF06081 DUF939: Bacterial pro 24.1 4.2E+02 0.0092 22.1 9.0 84 151-234 8-97 (141)
83 PRK12460 2-keto-3-deoxyglucona 24.1 88 0.0019 30.5 3.6 35 78-112 276-310 (312)
84 PF02699 YajC: Preprotein tran 24.0 1.3E+02 0.0027 23.4 3.8 11 104-114 19-29 (82)
85 PF03812 KdgT: 2-keto-3-deoxyg 23.9 80 0.0017 30.9 3.2 35 76-110 280-314 (314)
86 PF09945 DUF2177: Predicted me 23.9 1.3E+02 0.0027 25.8 4.1 29 145-173 68-96 (128)
87 cd02437 CCC1_like_1 CCC1-relat 23.8 4.7E+02 0.01 22.5 10.3 23 87-109 38-60 (175)
88 PF15086 UPF0542: Uncharacteri 23.3 68 0.0015 25.7 2.2 25 91-115 34-58 (74)
89 TIGR00844 c_cpa1 na(+)/h(+) an 23.3 4E+02 0.0086 29.4 8.5 25 151-175 210-234 (810)
90 PF14163 SieB: Superinfection 23.2 2E+02 0.0043 24.0 5.1 14 125-138 78-91 (151)
91 PF06295 DUF1043: Protein of u 23.0 73 0.0016 26.5 2.5 21 153-173 2-22 (128)
92 COG3086 RseC Positive regulato 22.8 1.2E+02 0.0026 27.1 3.8 30 85-114 104-133 (150)
93 PF14264 Glucos_trans_II: Gluc 22.4 5.9E+02 0.013 23.1 12.2 23 156-178 175-197 (319)
94 PF12575 DUF3753: Protein of u 22.3 3.9E+02 0.0084 21.3 6.2 47 124-170 17-67 (72)
95 PF03219 TLC: TLC ATP/ADP tran 22.2 8.4E+02 0.018 24.8 13.1 81 83-171 220-302 (491)
96 TIGR01010 BexC_CtrB_KpsE polys 22.1 2.9E+02 0.0064 25.9 6.5 28 146-173 328-355 (362)
97 PF04346 EutH: Ethanolamine ut 22.1 7.8E+02 0.017 24.7 9.6 35 194-228 188-222 (354)
98 PF02681 DUF212: Divergent PAP 22.0 2.4E+02 0.0052 24.6 5.5 21 144-164 121-141 (141)
99 TIGR03262 PhnU2 putative 2-ami 21.7 7.9E+02 0.017 24.3 11.3 14 95-108 246-259 (546)
100 COG1963 Uncharacterized protei 21.6 1.1E+02 0.0023 27.5 3.3 24 82-105 128-151 (153)
101 PF04246 RseC_MucC: Positive r 21.4 1E+02 0.0023 25.1 3.1 30 85-114 97-126 (135)
102 PRK05886 yajC preprotein trans 21.2 1.2E+02 0.0025 25.5 3.3 26 91-116 11-36 (109)
103 PF02699 YajC: Preprotein tran 21.1 1.3E+02 0.0028 23.3 3.4 26 91-116 9-34 (82)
104 PHA02758 hypothetical protein; 20.8 2.9E+02 0.0063 26.8 6.2 47 189-235 9-55 (321)
105 PF04240 DUF422: Protein of un 20.8 76 0.0016 28.7 2.3 28 83-110 142-169 (214)
106 PF07406 NICE-3: NICE-3 protei 20.8 2.4E+02 0.0053 25.4 5.5 57 88-145 14-77 (186)
107 PRK13952 mscL large-conductanc 20.3 2.4E+02 0.0053 24.6 5.2 28 83-111 87-114 (142)
108 PF03899 ATP_synt_I: ATP synth 20.0 2.3E+02 0.005 20.9 4.5 30 85-114 23-52 (100)
No 1
>PF11282 DUF3082: Protein of unknown function (DUF3082); InterPro: IPR021434 This family of proteins has no known function.
Probab=99.97 E-value=1.8e-31 Score=208.45 Aligned_cols=81 Identities=44% Similarity=0.739 Sum_probs=78.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023868 147 PPSPVQALLGGLTAGVIAIILYKFTTTIEAALN-RQTISDNFSVRQITITIRTIVNGLCYLATFVFGINSVGLFLYSGQL 225 (276)
Q Consensus 147 ~~tPLq~L~GAliAgvlA~llY~LT~sI~asF~-~p~~SdN~~A~~Ia~aVRTLVvGL~yLATFiFa~~alGL~LLaIQL 225 (276)
+|||+|||+||++||++||++|++|++|+++|+ +|..+||+.|+||+++|||+|+|+||||||+||++++||++|++|+
T Consensus 1 ~~~Pl~~l~Ga~~ag~la~~ly~lt~~i~~~fa~~p~~s~~~~a~~Ia~~vRTlv~Gl~~LaTfiF~~~~lGL~ll~iql 80 (82)
T PF11282_consen 1 KPTPLRCLSGALIAGGLAYGLYFLTTSIAASFASKPIHSSNYIAQNIASAVRTLVVGLCYLATFIFGFVALGLFLLFIQL 80 (82)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999995 8888999999999999999999999999999999999999999999
Q ss_pred hh
Q 023868 226 AL 227 (276)
Q Consensus 226 l~ 227 (276)
++
T Consensus 81 l~ 82 (82)
T PF11282_consen 81 LF 82 (82)
T ss_pred hC
Confidence 85
No 2
>PF03899 ATP_synt_I: ATP synthase I chain; InterPro: IPR005598 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The atp operon of most prokaryotes contains the structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein of unknown function. A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex []. A role in magnesium uptake has also been suggested []. More information about this protein can be found at Protein of the Month: ATP synthases [].
Probab=85.50 E-value=13 Score=27.72 Aligned_cols=68 Identities=22% Similarity=0.310 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 023868 151 VQALLGGLTAGVIAIILYKFTTTIEAALNRQTISDNFSVRQITITIRTIVNGLCYLATFVF--GINSVGLF 219 (276)
Q Consensus 151 Lq~L~GAliAgvlA~llY~LT~sI~asF~~p~~SdN~~A~~Ia~aVRTLVvGL~yLATFiF--a~~alGL~ 219 (276)
+.++.|++++..-.+.+.+.........++ ...........+..+|-++.++.+...+-+ .++-+|++
T Consensus 27 ~s~~~G~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~R~~l~~~~~~~~~~~~~~~~~~~~~ 96 (100)
T PF03899_consen 27 LSFLLGGLISLLNFFLLARRVFRLAGALAM-DPGRAVRAMYLGYFIRLALTILLFILAFKFPPELNPIALL 96 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 456666666665555555555444444333 122233335688999999999988888888 56665554
No 3
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=71.93 E-value=12 Score=37.46 Aligned_cols=75 Identities=20% Similarity=0.306 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCccHHHHHHHhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 023868 90 SVLLTGAISVFLFRALRRRAKRAKELKFRSSGAKKSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLTAGVIAIILYK 169 (276)
Q Consensus 90 sv~ltg~i~vfl~R~~rrRa~rAke~r~rs~g~~k~~~ee~~e~lka~~~~~i~~q~~~tPLq~L~GAliAgvlA~llY~ 169 (276)
-++|++++++.+.|.+||-.+|-.++. ...++++...-|.+...---+++.+.-+.+++|+-+=.++..++.-
T Consensus 210 vl~L~~~v~~Il~R~l~~D~~~y~~~~-------~~~~~~ee~GWKlvhgDVFR~P~~~~lls~lvG~G~Qll~~~~~~~ 282 (521)
T PF02990_consen 210 VLFLSGLVAIILLRTLRRDISRYNDED-------SEEDDQEESGWKLVHGDVFRPPKHPMLLSALVGTGIQLLFMALVTL 282 (521)
T ss_pred HHHHHHHHHHHHHHHhhcccccccccc-------cccccccccchhhhhHHHhcCcCCchHHHhHhcchhhhhHHHHHHH
Confidence 456688999999999998777665422 0012222333444432222344577788889888776666555544
Q ss_pred HH
Q 023868 170 FT 171 (276)
Q Consensus 170 LT 171 (276)
+.
T Consensus 283 ~~ 284 (521)
T PF02990_consen 283 FF 284 (521)
T ss_pred HH
Confidence 43
No 4
>PRK11281 hypothetical protein; Provisional
Probab=71.54 E-value=26 Score=39.09 Aligned_cols=81 Identities=21% Similarity=0.228 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCCCCchHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHH
Q 023868 151 VQALLGGLTAGVIAIILYKFTTTIEAAL--NRQTISDNFSVRQITITIRTIVNGLCYLATF------------VFGINSV 216 (276)
Q Consensus 151 Lq~L~GAliAgvlA~llY~LT~sI~asF--~~p~~SdN~~A~~Ia~aVRTLVvGL~yLATF------------iFa~~al 216 (276)
+.-++.+++-++++|.++.+...+.... .+-..+ ......|...+|.+++.++.+..+ ++|..|+
T Consensus 836 l~~Ll~allIl~i~~~l~r~l~~ll~~~~~~rl~l~-~~~~~~i~~li~y~I~~i~iliaL~~lGi~~t~L~~l~gaLgV 914 (1113)
T PRK11281 836 LGNLLFALIILVVTYVLVRNLPGLLEVLVLSRLNLR-QGTSYAITTLLTYIIIAVGAVTAFSTLGVSWDKLQWLVAALSV 914 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-chHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 3345555555666666666666555432 222222 233566777788777777766554 6788888
Q ss_pred HHHHHHHHHhhhhcccC
Q 023868 217 GLFLYSGQLALNSFTED 233 (276)
Q Consensus 217 GL~LLaIQLl~q~lt~~ 233 (276)
|+ .+|.|-.+.++.++
T Consensus 915 gI-GfglQ~ilsNfISG 930 (1113)
T PRK11281 915 GL-GFGLQEIFANFVSG 930 (1113)
T ss_pred HH-HHHHHHHHHHHHHH
Confidence 84 46778777666543
No 5
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=69.95 E-value=4.2 Score=34.48 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023868 87 VATSVLLTGAISVFLFRALRRRAKRAK 113 (276)
Q Consensus 87 ~a~sv~ltg~i~vfl~R~~rrRa~rAk 113 (276)
|.+||++++++.+|+ +|||.||.+
T Consensus 73 v~aGvIg~Illi~y~---irR~~Kk~~ 96 (122)
T PF01102_consen 73 VMAGVIGIILLISYC---IRRLRKKSS 96 (122)
T ss_dssp HHHHHHHHHHHHHHH---HHHHS----
T ss_pred HHHHHHHHHHHHHHH---HHHHhccCC
Confidence 345555555444444 455555543
No 6
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=68.12 E-value=12 Score=26.83 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=9.8
Q ss_pred CCCccccCCCcccCCCCCChhhHH
Q 023868 65 EEGPVELPQSIFATTDEPSSLQVA 88 (276)
Q Consensus 65 ~~gp~el~~~~~~~~d~~splQ~a 88 (276)
+++||.+.= +|. +.+.|+-+.
T Consensus 3 N~~~V~v~~-~~~--~~~~pl~l~ 23 (68)
T PF06305_consen 3 NTQPVTVNF-LFG--QFPLPLGLL 23 (68)
T ss_pred CCceEEEEE-Eee--eccchHHHH
Confidence 455666652 221 222676654
No 7
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=66.65 E-value=1.7e+02 Score=30.54 Aligned_cols=33 Identities=0% Similarity=0.015 Sum_probs=25.2
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023868 82 PSSLQVATSVLLTGAISVFLFRALRRRAKRAKE 114 (276)
Q Consensus 82 ~splQ~a~sv~ltg~i~vfl~R~~rrRa~rAke 114 (276)
.-|+++..|+++..+..-++...+.+...+--+
T Consensus 213 g~Plki~~gl~~l~l~lp~l~~~~~~~~~~~~~ 245 (609)
T PRK12772 213 GLPIKILVGLTAFVIALPLFLKVISSAFSNLPD 245 (609)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999998888888888777776665544
No 8
>PF01384 PHO4: Phosphate transporter family; InterPro: IPR001204 The PHO-4 family of transporters includes the phosphate-repressible phosphate permease (PHO-4) from Neurospora crassa which is probably a sodium-phosphate symporter []. This family also includes the human leukemia virus receptor.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate ion transport, 0016020 membrane
Probab=66.53 E-value=22 Score=33.72 Aligned_cols=71 Identities=17% Similarity=0.131 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchH------HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q 023868 154 LLGGLTAGVIAIILYKFTTTIEAALNRQTISDNF------SVRQITITIRTIVNGLCYLATFVFGIN----SVGLFLYSG 223 (276)
Q Consensus 154 L~GAliAgvlA~llY~LT~sI~asF~~p~~SdN~------~A~~Ia~aVRTLVvGL~yLATFiFa~~----alGL~LLaI 223 (276)
++-=+++++++|++|.+...+.....++...... .-.+.-..+|.+.+..+.+..|.+|.| ++|.+....
T Consensus 127 v~sPlia~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~sa~~~sfahGaND~~naig~~~~~~ 206 (326)
T PF01384_consen 127 VISPLIAFILAYILYRLIRRIFLRRKNPVKRALRPLPILFFDPRVEKIFRFLQILSAAFVSFAHGANDVANAIGPLAAIL 206 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4445677888888998888887643222111100 123566778999999999999999999 999988777
Q ss_pred H
Q 023868 224 Q 224 (276)
Q Consensus 224 Q 224 (276)
.
T Consensus 207 ~ 207 (326)
T PF01384_consen 207 I 207 (326)
T ss_pred H
Confidence 6
No 9
>COG1963 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.36 E-value=67 Score=28.73 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=23.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHH
Q 023868 147 PPSPVQALLGGLTAGVIAIILYKFT 171 (276)
Q Consensus 147 ~~tPLq~L~GAliAgvlA~llY~LT 171 (276)
.-+|++.+.|.++..+++|++|.+.
T Consensus 127 GH~p~eV~~G~~lGI~i~~i~~~~~ 151 (153)
T COG1963 127 GHTPLEVFAGLLLGILIAWIFYAFF 151 (153)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999999764
No 10
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=57.17 E-value=9.3 Score=33.84 Aligned_cols=37 Identities=32% Similarity=0.339 Sum_probs=23.5
Q ss_pred hhHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhhcccC
Q 023868 85 LQVATSVL---LTGAISVFLFRALRRRAKRAKELKFRSSG 121 (276)
Q Consensus 85 lQ~a~sv~---ltg~i~vfl~R~~rrRa~rAke~r~rs~g 121 (276)
+|-++-|+ -..+|.+|++|.+|=|-+..|+-|+..-+
T Consensus 94 l~R~~~Vl~g~s~l~i~yfvir~~R~r~~~rktRkYgvl~ 133 (163)
T PF06679_consen 94 LKRALYVLVGLSALAILYFVIRTFRLRRRNRKTRKYGVLT 133 (163)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhccccccceeecccC
Confidence 78766443 23456788999998776555554554433
No 11
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=56.49 E-value=39 Score=23.79 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=27.0
Q ss_pred Ccc-HHHHHHHhhhcCCCCCCCCCCChhHHHHHHHHH
Q 023868 125 SLK-DEALDNLKALGSSSIDAKGPPSPVQALLGGLTA 160 (276)
Q Consensus 125 ~~~-ee~~e~lka~~~~~i~~q~~~tPLq~L~GAliA 160 (276)
.++ +|+.+.++..+.++++.+++++.++.++..+.-
T Consensus 10 GLs~~~v~~r~~~~G~N~l~~~~~~s~~~~~l~~~~~ 46 (64)
T smart00831 10 GLSSEEAARRLERYGPNELPPPKKRSPLLRFLRQFHN 46 (64)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHh
Confidence 444 356666777788888888889999999988743
No 12
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=56.19 E-value=17 Score=29.75 Aligned_cols=34 Identities=35% Similarity=0.442 Sum_probs=22.6
Q ss_pred CChhhHHHHHHHHHHHHHH-HHHHHHHHHHHhhhh
Q 023868 82 PSSLQVATSVLLTGAISVF-LFRALRRRAKRAKEL 115 (276)
Q Consensus 82 ~splQ~a~sv~ltg~i~vf-l~R~~rrRa~rAke~ 115 (276)
++.++...-+++..++.+| +.|--|||.|+-+|+
T Consensus 6 ~~~~~~ll~~vl~~~ifyFli~RPQrKr~K~~~~m 40 (97)
T COG1862 6 GSGLVLLLPLVLIFAIFYFLIIRPQRKRMKEHQEL 40 (97)
T ss_pred cccHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 4567777777777777776 556666666666653
No 13
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=53.03 E-value=74 Score=25.81 Aligned_cols=22 Identities=32% Similarity=0.243 Sum_probs=15.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHH
Q 023868 149 SPVQALLGGLTAGVIAIILYKF 170 (276)
Q Consensus 149 tPLq~L~GAliAgvlA~llY~L 170 (276)
+.+-.+.|++.-.++++++|.-
T Consensus 92 ~~~~~~~~~~~lp~~a~~lY~~ 113 (117)
T TIGR03142 92 GRLAALVVVLLLPVLALGLYLK 113 (117)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777888888874
No 14
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=52.97 E-value=74 Score=30.63 Aligned_cols=70 Identities=24% Similarity=0.220 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023868 153 ALLGGLTAGVIAIILYKFTTTIEAAL--NRQTISDNFSVRQITITIRTIVNGLCYLATFVFGINSVGLFLYSGQL 225 (276)
Q Consensus 153 ~L~GAliAgvlA~llY~LT~sI~asF--~~p~~SdN~~A~~Ia~aVRTLVvGL~yLATFiFa~~alGL~LLaIQL 225 (276)
..+.++.|.+++++++++-..+.... .-...-+...|+. .+-|+.-+|..++||+|.++-+-|-+.+-|.
T Consensus 9 P~l~~~~av~la~~~~~ld~~~~~~~~~~~~~~~~~~~ar~---lLstia~smitv~~~~fSi~~val~~assq~ 80 (371)
T PF10011_consen 9 PLLYAVLAVVLAFLTPYLDRLLPDSGLLPFFFLIGPDGART---LLSTIAGSMITVTGFVFSITLVALQLASSQF 80 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45566777777777777766655321 1122233344444 4567788888999999988777666666654
No 15
>COG3192 EutH Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=52.95 E-value=42 Score=33.41 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023868 199 IVNGLCYLATFVFGINSVGLFLYSGQLALN 228 (276)
Q Consensus 199 LVvGL~yLATFiFa~~alGL~LLaIQLl~q 228 (276)
.+.|.-+.+.++-+++.+||.+..+|-+-.
T Consensus 205 Mi~gF~iFgk~v~~vi~igLaa~ivq~ltG 234 (389)
T COG3192 205 MITGFQIFGKFVVAVITIGLAAAIVQFLTG 234 (389)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467778899999999999999999997655
No 16
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=52.14 E-value=34 Score=26.08 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023868 86 QVATSVLLTGAISVFLFRALRRRAKRAKELK 116 (276)
Q Consensus 86 Q~a~sv~ltg~i~vfl~R~~rrRa~rAke~r 116 (276)
=..++++..+.+++++||-.|+|+...=+.+
T Consensus 35 ~~l~A~vis~~lS~~ll~~~R~~~~~~ia~~ 65 (69)
T PF14012_consen 35 AALLALVISMPLSYVLLRRLRDRASADIAAR 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788899999999999999998776544
No 17
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=51.74 E-value=4.9 Score=38.41 Aligned_cols=47 Identities=23% Similarity=0.492 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhcccCCCCCccHHHHHH
Q 023868 84 SLQVATSVLLTGAISVFLFRALRRRAKRAK---ELKFRSSGAKKSLKDEALDN 133 (276)
Q Consensus 84 plQ~a~sv~ltg~i~vfl~R~~rrRa~rAk---e~r~rs~g~~k~~~ee~~e~ 133 (276)
++=+++-+++.|+|+..++| |||-.|.+ +-.||+-|. .=+..+++|+
T Consensus 152 aVVI~~iLLIA~iIa~icyr--rkR~GK~~~ee~~~f~~KGi-PvIF~dElee 201 (290)
T PF05454_consen 152 AVVIAAILLIAGIIACICYR--RKRKGKMSLEEQKTFISKGI-PVIFQDELEE 201 (290)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhh--hhhccccccchhHHHHhcCC-ceeccccccc
Confidence 34456667778888899999 88877776 345777773 3334444444
No 18
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=51.06 E-value=82 Score=30.33 Aligned_cols=84 Identities=25% Similarity=0.337 Sum_probs=45.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCCC----chHH----HH-HHHHHHHHHH----------------
Q 023868 147 PPSPVQALLGGLTAGVIAIILYKFTTTIEAA-LNRQTIS----DNFS----VR-QITITIRTIV---------------- 200 (276)
Q Consensus 147 ~~tPLq~L~GAliAgvlA~llY~LT~sI~as-F~~p~~S----dN~~----A~-~Ia~aVRTLV---------------- 200 (276)
.+.-.+.+++++.++.++..-.-|+..+.+. .+...++ .|+. .| -++.-+=|.+
T Consensus 43 ~~~~ar~lLstia~smitv~~~~fSi~~val~~assq~sPR~l~~f~~d~~~q~vLg~Figtfvy~l~~l~~i~~~~~~~ 122 (371)
T PF10011_consen 43 GPDGARTLLSTIAGSMITVTGFVFSITLVALQLASSQFSPRLLRNFMRDRVTQVVLGTFIGTFVYSLLVLIAIRSGDYGS 122 (371)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcccccccc
Confidence 3444567778888888888888887777763 2221111 1211 11 1222222221
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 023868 201 -NGLCYLATFVFGINSVGLFLYSGQLALNSF 230 (276)
Q Consensus 201 -vGL~yLATFiFa~~alGL~LLaIQLl~q~l 230 (276)
-.++.+.+.++++.++++++++|+-+.+.+
T Consensus 123 ~p~~~~~~a~~l~i~~v~~li~fI~~i~~~i 153 (371)
T PF10011_consen 123 VPRLSVFIALALAILSVVLLIYFIHHIARSI 153 (371)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 133445566667777888888887665543
No 19
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.86 E-value=30 Score=36.11 Aligned_cols=27 Identities=33% Similarity=0.605 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hhh
Q 023868 88 ATSVLLTGAISVFLFRALRRRAKR-AKE 114 (276)
Q Consensus 88 a~sv~ltg~i~vfl~R~~rrRa~r-Ake 114 (276)
..-++|+|+++..|.|.+|+-..| |||
T Consensus 234 mmVifLvGlvamILMRtLrnDyarY~~d 261 (593)
T KOG1277|consen 234 MMVIFLVGLVAMILMRTLRNDYARYAKD 261 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456789999999999999986544 444
No 20
>PRK13955 mscL large-conductance mechanosensitive channel; Provisional
Probab=48.69 E-value=60 Score=27.99 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=20.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHH
Q 023868 83 SSLQVATSVLLTGAISVFLFRALRR 107 (276)
Q Consensus 83 splQ~a~sv~ltg~i~vfl~R~~rr 107 (276)
+-|+....+++++++.+++.+.+.|
T Consensus 68 ~fl~avInFlIiA~vvF~ivk~~nk 92 (130)
T PRK13955 68 NFIQTIFDFLIIAASIFMFVKVFNK 92 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688899999999999888887664
No 21
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=48.44 E-value=21 Score=29.78 Aligned_cols=30 Identities=10% Similarity=0.160 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023868 87 VATSVLLTGAISVFLFRALRRRAKRAKELK 116 (276)
Q Consensus 87 ~a~sv~ltg~i~vfl~R~~rrRa~rAke~r 116 (276)
+.++++.-++|++++.|+..++.++.++++
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~~~~q~~l~ 31 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSNQQKQAKLE 31 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccchhhHHHHH
Confidence 356777778899999999998877665543
No 22
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=47.47 E-value=6.2 Score=33.98 Aligned_cols=38 Identities=37% Similarity=0.470 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCccHHHHHHHhh
Q 023868 90 SVLLTGAISVFLFRALRRRAKRAKELKFRSSGAKKSLKDEALDNLKA 136 (276)
Q Consensus 90 sv~ltg~i~vfl~R~~rrRa~rAke~r~rs~g~~k~~~ee~~e~lka 136 (276)
-+++.++..++++|.+|||.+++.+ ..+++|+.+.|++
T Consensus 108 P~~~l~~g~~~~~~~~rr~~~~~~~---------~~ls~~e~~rl~~ 145 (148)
T PF03918_consen 108 PFLLLLLGGALLFRRLRRWRRRAAQ---------EELSEEERRRLDA 145 (148)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCC---------CCCCHHHHHHHHH
Confidence 3455666777788888888777765 3566666666654
No 23
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=46.52 E-value=1.5e+02 Score=33.35 Aligned_cols=85 Identities=16% Similarity=0.105 Sum_probs=41.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCCCchHHHHHHHHHHHHHHHHHHHHHHH------------HHH
Q 023868 146 GPPSPVQALLGGLTAGVIAIILYKFTTTIEA-ALNRQTISDNFSVRQITITIRTIVNGLCYLATF------------VFG 212 (276)
Q Consensus 146 ~~~tPLq~L~GAliAgvlA~llY~LT~sI~a-sF~~p~~SdN~~A~~Ia~aVRTLVvGL~yLATF------------iFa 212 (276)
.+.|..+.+. |++-+++++.+.+.-.++.. .+.+..--+.-...-|+..+|.+++.++.+..+ +.|
T Consensus 829 ~~itl~~ll~-AllIliv~~~l~r~l~~lle~~l~~~~~l~~~~~~~i~~l~~y~I~~ig~l~~L~~lGI~~t~l~al~g 907 (1109)
T PRK10929 829 QPITLGSVLI-AILVFIITTQLVRNLPALLELALLQHLDLTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVA 907 (1109)
T ss_pred eeeeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 4455544433 44444444444444444333 342222223334566777777777665544432 244
Q ss_pred HHHHHHHHHHHHHhhhhccc
Q 023868 213 INSVGLFLYSGQLALNSFTE 232 (276)
Q Consensus 213 ~~alGL~LLaIQLl~q~lt~ 232 (276)
..|+| +.+|.|=.+.++.+
T Consensus 908 alGVg-IGfAlQ~ilsNfiS 926 (1109)
T PRK10929 908 ALGVG-LGFGLQEIFANFIS 926 (1109)
T ss_pred HHHHH-HHHHHHHHHHHHHH
Confidence 55555 44666666555543
No 24
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=46.20 E-value=59 Score=27.33 Aligned_cols=42 Identities=31% Similarity=0.542 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHH---------HHHHHHhhhhhhcccCC-C--CCccHHHHHHHhh
Q 023868 94 TGAISVFLFRAL---------RRRAKRAKELKFRSSGA-K--KSLKDEALDNLKA 136 (276)
Q Consensus 94 tg~i~vfl~R~~---------rrRa~rAke~r~rs~g~-~--k~~~ee~~e~lka 136 (276)
.|-++-|+||++ |||.++|=+ +++-.-- | .++++|+++.|.+
T Consensus 47 vgW~~sYlfRV~t~~MTy~~Q~k~Ye~a~~-~~~~~~lqkRle~l~~eE~~~L~~ 100 (104)
T PF11460_consen 47 VGWVSSYLFRVVTGKMTYMQQRKDYEEAVD-QLTNEELQKRLEELSPEELEALQA 100 (104)
T ss_pred HHHHhHHHhhhccCCCcHHHHHHHHHHHHH-HHhHHHHHHHHHhCCHHHHHHHHH
Confidence 344444889987 456666552 1110000 1 2677777776654
No 25
>TIGR00220 mscL large conductance mechanosensitive channel protein. Protein encodes a channel which opens in response to a membrane stretch force. Probably serves as an osmotic gauge. Carboxy terminus tends to be more divergent across species with a high degree of sequence conservation found at the N-terminus.
Probab=45.30 E-value=70 Score=27.39 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=21.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023868 83 SSLQVATSVLLTGAISVFLFRALRRRAKR 111 (276)
Q Consensus 83 splQ~a~sv~ltg~i~vfl~R~~rrRa~r 111 (276)
+-++....+++++++.+++.+.+. |.+|
T Consensus 70 ~fl~avInFlIiA~vvf~~vk~~~-k~~~ 97 (127)
T TIGR00220 70 EFIQNIINFLIIAFAIFMIIKAIN-KLRR 97 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 457888889999999988888775 3444
No 26
>PF02417 Chromate_transp: Chromate transporter; InterPro: IPR003370 This entry represents chromate transporters (CHR) [, ]. These proteins reduce chromate accumulation and are essential for chromate resistance. They are composed of one or two copies of this region. The short-chain CHR proteins form heterodimer transporters which efflux chromate ions from the cytoplasm, while the long chain CHR proteins appear to have arisen from a gene fusion event of two short chain transporters[].; GO: 0015109 chromate transmembrane transporter activity, 0015703 chromate transport
Probab=45.07 E-value=1.9e+02 Score=24.51 Aligned_cols=112 Identities=21% Similarity=0.248 Sum_probs=65.7
Q ss_pred hhhHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhhhcccCCCCCccHHHHHHHhhhcCCCCCCCCCCChhHH------
Q 023868 84 SLQVATSVLLTGAISV----FLFRALRRRAKRAKELKFRSSGAKKSLKDEALDNLKALGSSSIDAKGPPSPVQA------ 153 (276)
Q Consensus 84 plQ~a~sv~ltg~i~v----fl~R~~rrRa~rAke~r~rs~g~~k~~~ee~~e~lka~~~~~i~~q~~~tPLq~------ 153 (276)
-+|....+..+|+.++ -....+||+.-..+ +-++||+..+.-++. |.-|+|..+
T Consensus 2 l~~Lf~~f~~ig~~~FGGg~a~i~~~~~~~V~~~----------~wlt~~~f~~~~al~------q~~PGP~~~n~a~~i 65 (169)
T PF02417_consen 2 LLELFWSFFKIGLFSFGGGYAIIPLIQREFVERR----------GWLTEEEFLEGLALA------QALPGPIAINLATFI 65 (169)
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhHcc----------CCCCHHHHHHHHHHH------HcCCChHHHHHHHHH
Confidence 3455555666665542 34666777665332 589999998888865 455667665
Q ss_pred ------HHHHHHHHHHHH-HHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023868 154 ------LLGGLTAGVIAI-ILYKFTTTIEAALNRQTISDNFSVRQITITIRTIVNGLCYLATFVFGI 213 (276)
Q Consensus 154 ------L~GAliAgvlA~-llY~LT~sI~asF~~p~~SdN~~A~~Ia~aVRTLVvGL~yLATFiFa~ 213 (276)
+.||++|+.--+ ..+-++..+...+.+ +.+|..++.+-..+|-.++|+...++.-++-
T Consensus 66 G~~~~G~~Gai~a~~~~~lP~~l~~~~~~~~~~~--~~~~~~v~~~l~g~~~~~~gli~~~~~~l~~ 130 (169)
T PF02417_consen 66 GYRLAGFLGAIVATIGFILPSFLLILLLSPLYSR--FRENPWVQAFLKGVRPAVVGLILAAAIKLAK 130 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444433211 122222222222222 4446668888899999999988877765543
No 27
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=44.51 E-value=19 Score=27.05 Aligned_cols=17 Identities=18% Similarity=0.589 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHH
Q 023868 151 VQALLGGLTAGVIAIIL 167 (276)
Q Consensus 151 Lq~L~GAliAgvlA~ll 167 (276)
+++++||++++++++++
T Consensus 54 ~r~iiGaiI~~i~~~i~ 70 (71)
T PF10779_consen 54 WRTIIGAIITAIIYLII 70 (71)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56777777777766654
No 28
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=42.89 E-value=28 Score=28.56 Aligned_cols=6 Identities=0% Similarity=0.573 Sum_probs=2.2
Q ss_pred HHHHHH
Q 023868 90 SVLLTG 95 (276)
Q Consensus 90 sv~ltg 95 (276)
.|++..
T Consensus 6 ~iii~~ 11 (130)
T PF12273_consen 6 AIIIVA 11 (130)
T ss_pred HHHHHH
Confidence 333333
No 29
>PRK11677 hypothetical protein; Provisional
Probab=42.78 E-value=39 Score=29.11 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023868 88 ATSVLLTGAISVFLFRALRRRAKRAKELK 116 (276)
Q Consensus 88 a~sv~ltg~i~vfl~R~~rrRa~rAke~r 116 (276)
..+++.-++|++|+.|.+.+..++.+++.
T Consensus 7 ~i~livG~iiG~~~~R~~~~~~~~q~~le 35 (134)
T PRK11677 7 LIGLVVGIIIGAVAMRFGNRKLRQQQALQ 35 (134)
T ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHHH
Confidence 46677777888999998888777666543
No 30
>PF03381 CDC50: LEM3 (ligand-effect modulator 3) family / CDC50 family; InterPro: IPR005045 Members of this family have no known function. They have predicted transmembrane helices.; GO: 0016020 membrane
Probab=41.81 E-value=36 Score=31.72 Aligned_cols=36 Identities=11% Similarity=0.088 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 023868 197 RTIVNGLCYLATFVFGINSVGLFLYSGQLALNSFTED 233 (276)
Q Consensus 197 RTLVvGL~yLATFiFa~~alGL~LLaIQLl~q~lt~~ 233 (276)
|...+|++||..+.+.++ +|++++.+++...|=.|+
T Consensus 241 kn~~Lgi~ylvvg~i~~v-~~i~~~~~~~~~~r~~gD 276 (278)
T PF03381_consen 241 KNYFLGIAYLVVGGICLV-LAIIFLIIHYFKPRKLGD 276 (278)
T ss_pred cccHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCCCC
Confidence 889999999999988775 688888888886665554
No 31
>PLN02598 omega-6 fatty acid desaturase
Probab=39.55 E-value=1.9e+02 Score=29.00 Aligned_cols=54 Identities=11% Similarity=-0.023 Sum_probs=35.6
Q ss_pred HHHHHHhhhhhhcccCCCCCccHHHHHHHhhhcCCCCCCC-CCCChhHHHHHHHHHHHHH
Q 023868 106 RRRAKRAKELKFRSSGAKKSLKDEALDNLKALGSSSIDAK-GPPSPVQALLGGLTAGVIA 164 (276)
Q Consensus 106 rrRa~rAke~r~rs~g~~k~~~ee~~e~lka~~~~~i~~q-~~~tPLq~L~GAliAgvlA 164 (276)
..|.+-|++..||.-|-.+ -++-.+.++|..- +.. -+++|++.+..-+...++.
T Consensus 56 ~~~~~~~~~~~~~~~~~~~-~~~~tl~~i~~ai----P~~~F~~s~~rs~~~l~~~i~~~ 110 (421)
T PLN02598 56 EERKQLAESYGFTQIGEPL-PDNVTLKDVVKTL----PKEVFEIDDFKAWKTVAITVTSY 110 (421)
T ss_pred HHHHHHHHhhChhhcCCcC-CCCcCHHHHHHhC----CHHHcCCCHHHHHHHHHHHHHHH
Confidence 7899999999999999322 2333454455432 333 6888999887655555443
No 32
>PF11862 DUF3382: Domain of unknown function (DUF3382); InterPro: IPR021807 This entry represents the N-terminal domain of the LivHM type high-affinity branched-chain amino acid transport system permease proteins. The domain is about 100 amino acids in length, and is found associated with PF02653 from PFAM.
Probab=38.46 E-value=1.3e+02 Score=24.12 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 023868 89 TSVLLTGAISVFLFRALRRRAKRAK 113 (276)
Q Consensus 89 ~sv~ltg~i~vfl~R~~rrRa~rAk 113 (276)
...+..+++.+|++.++|.+..+..
T Consensus 44 ~~~V~~~~~~~Fl~qL~r~~~~~~~ 68 (101)
T PF11862_consen 44 AWWVAVAAAGRFLFQLFRPWLARRF 68 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567788999999999988887443
No 33
>PF04145 Ctr: Ctr copper transporter family; InterPro: IPR007274 The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation. A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionines probably coordinate copper during the process of metal transport.; GO: 0005375 copper ion transmembrane transporter activity, 0035434 copper ion transmembrane transport, 0016021 integral to membrane; PDB: 2LS4_A 2LS2_A 2LS3_A.
Probab=37.94 E-value=91 Score=24.94 Aligned_cols=37 Identities=27% Similarity=0.360 Sum_probs=12.8
Q ss_pred cccCCCCCChhhHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 023868 75 IFATTDEPSSLQVATSVLLTGAISVF--LFRALRRRAKR 111 (276)
Q Consensus 75 ~~~~~d~~splQ~a~sv~ltg~i~vf--l~R~~rrRa~r 111 (276)
+|..=.--|+-|-+.+.+...+++++ ++|.+|+|..+
T Consensus 15 LF~~W~~~s~~~~~~sci~~f~lav~~e~L~~~r~~~~~ 53 (144)
T PF04145_consen 15 LFKSWKPSSAGAYVGSCIGVFLLAVLYEFLKALRRRLER 53 (144)
T ss_dssp ----------HHHHHHHHHHHHHHHHTTT----------
T ss_pred EeCCcEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443445777888888777777776 35666666554
No 34
>COG4325 Predicted membrane protein [Function unknown]
Probab=37.74 E-value=1.3e+02 Score=31.01 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 023868 207 ATFVFGINSVGLFLYSGQLAL 227 (276)
Q Consensus 207 ATFiFa~~alGL~LLaIQLl~ 227 (276)
+.+.++|+++|+++|++..+.
T Consensus 165 v~lLlaiisig~~iyfl~~l~ 185 (464)
T COG4325 165 VSLLLAIISIGALIYFLHHLM 185 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445667888999999998877
No 35
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=36.97 E-value=2.3e+02 Score=32.19 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=19.7
Q ss_pred ccCCCcccCCCCCChhhH------HHH-HHHHHHHHHHHHHHHHHHHHH
Q 023868 70 ELPQSIFATTDEPSSLQV------ATS-VLLTGAISVFLFRALRRRAKR 111 (276)
Q Consensus 70 el~~~~~~~~d~~splQ~------a~s-v~ltg~i~vfl~R~~rrRa~r 111 (276)
|.|+++|..++...-.=+ ... +++...+.-||...+.+=+++
T Consensus 441 efP~d~fti~~R~~g~VVL~l~~liy~Fv~LaIv~dDyFVPSLe~IAek 489 (1096)
T TIGR00927 441 EYPPDLFSVEERRQGWVVLHIFGMMYVFVALAIVCDEYFVPALGVITDK 489 (1096)
T ss_pred hCCcccccccccccceeHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 456667766555433211 111 122333345667776665543
No 36
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=35.87 E-value=45 Score=28.00 Aligned_cols=19 Identities=16% Similarity=0.434 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 023868 96 AISVFLFRALRRRAKRAKE 114 (276)
Q Consensus 96 ~i~vfl~R~~rrRa~rAke 114 (276)
++.||++|-=|||.|+.++
T Consensus 14 ~i~yf~iRPQkKr~Ke~~e 32 (113)
T PRK06531 14 GLIFFMQRQQKKQAQERQN 32 (113)
T ss_pred HHHHheechHHHHHHHHHH
Confidence 3345555555555555555
No 37
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.86 E-value=1.4e+02 Score=29.17 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023868 157 GLTAGVIAIILYKFTTTIEA 176 (276)
Q Consensus 157 AliAgvlA~llY~LT~sI~a 176 (276)
|++.++|+|+.|.|..+-..
T Consensus 90 Avi~aGi~y~~y~~~K~YV~ 109 (300)
T KOG2629|consen 90 AVILAGIAYAAYRFVKSYVL 109 (300)
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 56666699999999988666
No 38
>PF11377 DUF3180: Protein of unknown function (DUF3180); InterPro: IPR021517 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=34.80 E-value=2.2e+02 Score=24.14 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=19.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023868 83 SSLQVATSVLLTGAISVFLFRALRRRA 109 (276)
Q Consensus 83 splQ~a~sv~ltg~i~vfl~R~~rrRa 109 (276)
-|.=....+++.+++.+++-..+|||.
T Consensus 29 ~p~~~~~~l~~la~~~~~~a~~vr~~~ 55 (138)
T PF11377_consen 29 IPWTAGVTLLVLAAVELWLAWQVRRRI 55 (138)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456667777777778888888887
No 39
>TIGR02854 spore_II_GA sigma-E processing peptidase SpoIIGA. Members of this protein family are the stage II sporulation protein SpoIIGA. This protein acts as an activating protease for Sigma-E, one of several specialized sigma factors of the sporulation process in Bacillus subtilis and related endospore-forming bacteria.
Probab=33.82 E-value=82 Score=29.46 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=16.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHH
Q 023868 146 GPPSPVQALLGGLTAGVIAIILY 168 (276)
Q Consensus 146 ~~~tPLq~L~GAliAgvlA~llY 168 (276)
.+.+..|.+.||+++.+.+.+++
T Consensus 29 ~~~~~~Rll~ga~iGa~~~~~~~ 51 (288)
T TIGR02854 29 DKVSQWRLLLAALIGSLYVLFMF 51 (288)
T ss_pred ccchHHHHHHHHHHHHHHHHHHH
Confidence 35667788888888887776553
No 40
>COG2245 Predicted membrane protein [Function unknown]
Probab=33.09 E-value=1.9e+02 Score=26.65 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023868 156 GGLTAGVIAIILYKFTTTIEAALNRQTISDNFSVRQITIT-IRTIVNGLCYLATFVFGINSVGLFLYSGQLALNS 229 (276)
Q Consensus 156 GAliAgvlA~llY~LT~sI~asF~~p~~SdN~~A~~Ia~a-VRTLVvGL~yLATFiFa~~alGL~LLaIQLl~q~ 229 (276)
-++.+++-+|...+...-|.++|.|+.+. -.++...+. +|| -|+.|.---+-.++.+|++.+.+-..+.-
T Consensus 97 ~~l~~~Lag~Vi~wIl~Iisayf~kkale--ala~~tgv~~F~~--agl~Y~iGaiLlIV~vG~iIi~Ia~IL~i 167 (182)
T COG2245 97 SALGSFLAGFVILWILYIISAYFQKKALE--ALAQYTGVDLFRT--AGLLYFIGAILLIVAVGLIIILIAAILEI 167 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhCccHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777777777888766432 123333332 355 37888888888999999998887766553
No 41
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=32.69 E-value=4.2e+02 Score=24.83 Aligned_cols=51 Identities=12% Similarity=0.211 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-cCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 023868 155 LGGLTAGVIAIILYKFTTTIEAAL-NRQTISDNFSVRQITITIRTIVNGLCYL 206 (276)
Q Consensus 155 ~GAliAgvlA~llY~LT~sI~asF-~~p~~SdN~~A~~Ia~aVRTLVvGL~yL 206 (276)
+-+++-.+++|.++++..++.... .+... +.....-+...+|.++..++.+
T Consensus 32 ~~al~il~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~ 83 (286)
T PRK10334 32 VAALAIIIVGLIIARMISNAVNRLMISRKI-DATVADFLSALVRYGIIAFTLI 83 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666655543 33223 2333555677777776655544
No 42
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=32.56 E-value=2.1e+02 Score=21.58 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=15.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHH
Q 023868 146 GPPSPVQALLGGLTAGVIAIILYKF 170 (276)
Q Consensus 146 ~~~tPLq~L~GAliAgvlA~llY~L 170 (276)
.|..++-+.+|.++++++|+++..+
T Consensus 55 ~P~~~lil~l~~~~Gl~lgi~~~~~ 79 (82)
T PF13807_consen 55 SPKRALILALGLFLGLILGIGLAFL 79 (82)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666777777777766544
No 43
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=32.03 E-value=11 Score=30.30 Aligned_cols=6 Identities=33% Similarity=0.617 Sum_probs=2.2
Q ss_pred HHHHHH
Q 023868 91 VLLTGA 96 (276)
Q Consensus 91 v~ltg~ 96 (276)
|++.|+
T Consensus 76 ~~~v~~ 81 (96)
T PTZ00382 76 VAVVGG 81 (96)
T ss_pred hhHHHH
Confidence 333333
No 44
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=31.46 E-value=40 Score=28.25 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023868 152 QALLGGLTAGVIAIILYKFTTTIE 175 (276)
Q Consensus 152 q~L~GAliAgvlA~llY~LT~sI~ 175 (276)
..++++...+++++++|.++....
T Consensus 109 ~~~~~a~~~~Gl~~~~y~~~k~~v 132 (136)
T PF04695_consen 109 DVFITAYAFGGLGYGLYGLSKKYV 132 (136)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567888889999999999887654
No 45
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=31.40 E-value=5e+02 Score=25.26 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023868 90 SVLLTGAISVFLFRALRRRAK 110 (276)
Q Consensus 90 sv~ltg~i~vfl~R~~rrRa~ 110 (276)
|++.-+.|+.-+.+.+-||.+
T Consensus 167 Glv~G~liGgpi~~~lirk~~ 187 (368)
T PF03616_consen 167 GLVVGGLIGGPIANWLIRKGK 187 (368)
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 344445666666666666655
No 46
>PRK14740 kdbF potassium-transporting ATPase subunit F; Provisional
Probab=31.15 E-value=63 Score=21.81 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023868 152 QALLGGLTAGVIAIILYKFTT 172 (276)
Q Consensus 152 q~L~GAliAgvlA~llY~LT~ 172 (276)
--++||+.++++.|++|.|-.
T Consensus 5 ~wls~a~a~~Lf~YLv~ALlR 25 (29)
T PRK14740 5 DWLSLALATGLFVYLLVALLR 25 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 458899999999999998753
No 47
>COG4280 Predicted membrane protein [Function unknown]
Probab=31.08 E-value=88 Score=29.59 Aligned_cols=28 Identities=29% Similarity=0.211 Sum_probs=18.3
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023868 82 PSSLQVATSVLLTGAISVFLFRALRRRAK 110 (276)
Q Consensus 82 ~splQ~a~sv~ltg~i~vfl~R~~rrRa~ 110 (276)
-+++|.+.||++.-+ ++=..|+-+||.+
T Consensus 63 ln~lqiv~gvLLllF-G~rw~Rsavrr~a 90 (236)
T COG4280 63 LNYLQIVSGVLLLLF-GYRWIRSAVRRFA 90 (236)
T ss_pred chHHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 378999999987532 3444555555554
No 48
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=30.61 E-value=4e+02 Score=23.91 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023868 187 FSVRQITITIRTIVNGLCYLATFVFGINSVGLFLYSGQLA 226 (276)
Q Consensus 187 ~~A~~Ia~aVRTLVvGL~yLATFiFa~~alGL~LLaIQLl 226 (276)
.....+...++..+.|.+.++.+.+.+.++|+.++++...
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~gi~~~ 221 (327)
T PF01594_consen 182 EILRKIDQSLSAYLKGQLILALIQGVLTFIGFSIFGIPYA 221 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3477788999999999999999999999999999988654
No 49
>COG5500 Predicted integral membrane protein [Function unknown]
Probab=30.44 E-value=89 Score=27.82 Aligned_cols=49 Identities=24% Similarity=0.457 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHH-HHHHHHH
Q 023868 150 PVQALLGGLTAGVIAIILYKFTTTIEAALNRQTISDNFSVRQ-ITITIRT 198 (276)
Q Consensus 150 PLq~L~GAliAgvlA~llY~LT~sI~asF~~p~~SdN~~A~~-Ia~aVRT 198 (276)
|--.+..++=+|++|-+++.|++-|-+.+++=.....+.|-| |-++|-+
T Consensus 6 paL~~~AaiGsGlmaGvFFaFS~fvM~ALaRLpp~QGiAAMnsINitvin 55 (159)
T COG5500 6 PALELFAAIGSGLMAGVFFAFSTFVMNALARLPPTQGIAAMNSINITVIN 55 (159)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHhcCCCcchhhHhheeeEEEeC
Confidence 444567777788999999999999988886544444443333 4444433
No 50
>PRK06287 cobalt transport protein CbiN; Validated
Probab=30.20 E-value=51 Score=27.12 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=19.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHH
Q 023868 83 SSLQVATSVLLTGAISVFLFRALRRR 108 (276)
Q Consensus 83 splQ~a~sv~ltg~i~vfl~R~~rrR 108 (276)
+.+=-..||++|.++++.+.|.+|||
T Consensus 79 ~ilsgiiGv~i~l~l~~~~~~~l~r~ 104 (107)
T PRK06287 79 EIIAMVIGTLLVLALAYGVGKIFKKK 104 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44445678888888888888888877
No 51
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=30.01 E-value=4e+02 Score=23.73 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023868 87 VATSVLLTGAISVFLFRALRRRAK 110 (276)
Q Consensus 87 ~a~sv~ltg~i~vfl~R~~rrRa~ 110 (276)
.+..+.++++++.++--.++|+-+
T Consensus 7 ~~~~i~~~s~lg~~~P~~~~~~~~ 30 (317)
T PF02535_consen 7 AILAIFIVSLLGGLLPLLIRKFSK 30 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355667777777777777766655
No 52
>PRK13954 mscL large-conductance mechanosensitive channel; Provisional
Probab=29.95 E-value=1.3e+02 Score=25.66 Aligned_cols=25 Identities=4% Similarity=0.056 Sum_probs=20.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHH
Q 023868 83 SSLQVATSVLLTGAISVFLFRALRR 107 (276)
Q Consensus 83 splQ~a~sv~ltg~i~vfl~R~~rr 107 (276)
.-+|.....++++++.+++.+.+.|
T Consensus 65 ~fl~avinFlIiA~vvF~~vk~~~k 89 (119)
T PRK13954 65 LFIQSVIDFIIIAFALFIFVKIANT 89 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588899999999998888887765
No 53
>PF01384 PHO4: Phosphate transporter family; InterPro: IPR001204 The PHO-4 family of transporters includes the phosphate-repressible phosphate permease (PHO-4) from Neurospora crassa which is probably a sodium-phosphate symporter []. This family also includes the human leukemia virus receptor.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate ion transport, 0016020 membrane
Probab=29.58 E-value=5e+02 Score=24.75 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023868 89 TSVLLTGAISVFLFRALRRRAKRAKE 114 (276)
Q Consensus 89 ~sv~ltg~i~vfl~R~~rrRa~rAke 114 (276)
.+-++.+++++.+++.+||..+|.|.
T Consensus 128 ~sPlia~~~a~~l~~~~~~~~~~~~~ 153 (326)
T PF01384_consen 128 ISPLIAFILAYILYRLIRRIFLRRKN 153 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34556677888888888888876553
No 54
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=29.44 E-value=69 Score=28.58 Aligned_cols=41 Identities=29% Similarity=0.306 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCccHHHHHHHhhhc
Q 023868 88 ATSVLLTGAISVFLFRALRRRAKRAKELKFRSSGAKKSLKDEALDNLKALG 138 (276)
Q Consensus 88 a~sv~ltg~i~vfl~R~~rrRa~rAke~r~rs~g~~k~~~ee~~e~lka~~ 138 (276)
.+=|+++.+-+|+++|..|||-+.+ ...+.+|+.+.+.+..
T Consensus 110 ~~Pv~llllG~~~~~~~~rrr~~~~----------~~~Ls~ee~~rl~~ll 150 (153)
T COG3088 110 GLPVVLLLLGGVLLVRRARRRVREP----------PQTLSAEEEARLARLL 150 (153)
T ss_pred HhHHHHHHHHHHHHHHHHhhhhccC----------CCCCChhHHHHHHHHh
Confidence 3456677777788888888886511 2467777666666543
No 55
>PRK10983 putative inner membrane protein; Provisional
Probab=29.38 E-value=3.5e+02 Score=26.11 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023868 188 SVRQITITIRTIVNGLCYLATFVFGINSVGLFLYSGQ 224 (276)
Q Consensus 188 ~A~~Ia~aVRTLVvGL~yLATFiFa~~alGL~LLaIQ 224 (276)
.+..+..++|..+.|....|-..-.+.++|+.++++.
T Consensus 203 ~~~~~~~~i~~~~~G~~l~a~i~gvl~~ig~~i~gvp 239 (368)
T PRK10983 203 AVLLAAQAIRAVALGVVVTALVQAVLGGIGLAISGVP 239 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4677899999999998877777777777777766654
No 56
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=29.11 E-value=5.7e+02 Score=28.01 Aligned_cols=55 Identities=16% Similarity=0.128 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----ccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023868 153 ALLGGLTAGVIAIILYKFTTTIEAA----LNRQTISDNFSVRQITITIRTIVNGLCYLATFVF 211 (276)
Q Consensus 153 ~L~GAliAgvlA~llY~LT~sI~as----F~~p~~SdN~~A~~Ia~aVRTLVvGL~yLATFiF 211 (276)
++++|++..++|+..|.-.-.+.-+ +..+-+.| .++..-.++++.++|.++..+|
T Consensus 204 ~~L~~~~~l~~a~~y~L~ry~Ll~s~~g~v~GagYtD----v~a~Lp~~~il~~i~~~~A~~~ 262 (774)
T PF03699_consen 204 SILLALFFLLKAVGYWLDRYELLYSQRGVVYGAGYTD----VHATLPAYTILAVIALLCAVLF 262 (774)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHeecCCCeEeCCCcee----eeeHHHHHHHHHHHHHHHHHHH
Confidence 3567777888888777655444443 23343443 3333334444444444444333
No 57
>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.09 E-value=91 Score=28.28 Aligned_cols=79 Identities=19% Similarity=0.189 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 023868 151 VQALLGGLTAGVIAIILYKFTTTIEAALNRQTISDNFSVRQITITIRTIVNGLCYLATFVFGINSVGLFLYSGQLALNSF 230 (276)
Q Consensus 151 Lq~L~GAliAgvlA~llY~LT~sI~asF~~p~~SdN~~A~~Ia~aVRTLVvGL~yLATFiFa~~alGL~LLaIQLl~q~l 230 (276)
.++..++++.++++.++=-|+.++..--.-|.++.+...+|+ +.++.-....|.=+ |..+||+.-+.+-+++++
T Consensus 44 ~Ka~~sgV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~--~kdMg~r~~s~~kn----F~~iGlvfsg~Ec~iE~~ 117 (168)
T KOG3225|consen 44 VKAVKSGVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQV--AKDMGQRSGSYAKN----FAIIGLVFSGVECLIESF 117 (168)
T ss_pred HHHHHhhccccchhhhHHhhhhhcccCCCCCchhhhhhHHHH--HHHHHhhhcchhhh----hhhhhhhehhHHHHHHHH
Confidence 344444444444444444444444433334788899988888 66777777666544 457899999999999998
Q ss_pred ccCCC
Q 023868 231 TEDSS 235 (276)
Q Consensus 231 t~~~~ 235 (276)
..+.|
T Consensus 118 RAK~D 122 (168)
T KOG3225|consen 118 RAKSD 122 (168)
T ss_pred Hhhhc
Confidence 87655
No 58
>KOG3491 consensus Predicted membrane protein [Function unknown]
Probab=28.86 E-value=1.3e+02 Score=23.50 Aligned_cols=31 Identities=29% Similarity=0.323 Sum_probs=23.9
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 023868 142 IDAKGPPSPVQALLGGLTAGVIAIILYKFTTTI 174 (276)
Q Consensus 142 i~~q~~~tPLq~L~GAliAgvlA~llY~LT~sI 174 (276)
.+.+-++.|+ |+|=.+=.+++-.++++-+.+
T Consensus 31 ~e~kypvgPw--LlglFvFVVcGSa~FqIIr~~ 61 (65)
T KOG3491|consen 31 KEKKYPVGPW--LLGLFVFVVCGSALFQIIRTA 61 (65)
T ss_pred ccccCCcchH--HHHHHHHHhhcHHHHHHHHHH
Confidence 4455678886 788888888898998887665
No 59
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=28.82 E-value=1.1e+02 Score=22.69 Aligned_cols=65 Identities=22% Similarity=0.312 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCccHHHHHHHhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 023868 92 LLTGAISVFLFRALRRRAKRAKELKFRSSGAKKSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLTAGVIAIILYKFT 171 (276)
Q Consensus 92 ~ltg~i~vfl~R~~rrRa~rAke~r~rs~g~~k~~~ee~~e~lka~~~~~i~~q~~~tPLq~L~GAliAgvlA~llY~LT 171 (276)
+.-+.++++.++.... .+ +.+..-.+++.+.|... | -=+.+++.+-.+++++++|++-
T Consensus 9 ivy~~lg~~a~~~a~~-~~----------~~~~~~~~~~~~~l~~~---------p--~G~~ll~~vg~gli~~gi~~~~ 66 (73)
T PF06724_consen 9 IVYGALGYLALQAALG-GG----------GSSDQGSQGALAWLLEQ---------P--FGRWLLGAVGLGLIGYGIWQFV 66 (73)
T ss_pred HHHHHHHHHHHHHHHh-cC----------CCCCCCHHHHHHHHHhC---------C--CcHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777665543 11 11345556666655441 1 2267999999999999999998
Q ss_pred HHHHHhc
Q 023868 172 TTIEAAL 178 (276)
Q Consensus 172 ~sI~asF 178 (276)
+++-..|
T Consensus 67 ~a~~~~f 73 (73)
T PF06724_consen 67 KAVYRRF 73 (73)
T ss_pred HHHHhhC
Confidence 8876543
No 60
>PF11821 DUF3341: Protein of unknown function (DUF3341); InterPro: IPR021776 This family of proteins are functionally uncharacterised. This family is found in bacteria. Proteins in this family are about 170 amino acids in length.
Probab=28.82 E-value=3.9e+02 Score=23.84 Aligned_cols=40 Identities=30% Similarity=0.363 Sum_probs=31.7
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCCCc
Q 023868 146 GPPSPVQALLGGLTAGVIAIILYKFTTTIEAAL---NRQTISD 185 (276)
Q Consensus 146 ~~~tPLq~L~GAliAgvlA~llY~LT~sI~asF---~~p~~Sd 185 (276)
...=|+-+|.|+++++..|+++-+.|..+.--. .||.+|=
T Consensus 49 ~s~l~~~~l~~Gl~G~~~~~~l~~~t~~~dyP~~iGGKP~~S~ 91 (173)
T PF11821_consen 49 RSRLPWIALVGGLTGFATAFLLQWYTNAVDYPLNIGGKPLFSW 91 (173)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhcccceecCCCCCCCC
Confidence 455688899999999999999998888876433 4887764
No 61
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=28.39 E-value=1e+02 Score=22.45 Aligned_cols=20 Identities=20% Similarity=0.582 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023868 89 TSVLLTGAISVFLFRALRRR 108 (276)
Q Consensus 89 ~sv~ltg~i~vfl~R~~rrR 108 (276)
.+++-.|.++.|.+|-.+.|
T Consensus 17 Vglv~i~iva~~iYRKw~aR 36 (43)
T PF08114_consen 17 VGLVGIGIVALFIYRKWQAR 36 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888887766
No 62
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=28.35 E-value=3.4e+02 Score=25.50 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=23.8
Q ss_pred CCCChhHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Q 023868 146 GPPSPVQALLGGL--------------TAGVIAIILYKFTTTIEA 176 (276)
Q Consensus 146 ~~~tPLq~L~GAl--------------iAgvlA~llY~LT~sI~a 176 (276)
++-.|+-.|.|++ +..++|.++|.-++-+..
T Consensus 52 p~f~p~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~G 96 (254)
T PF07857_consen 52 PPFYPWAMLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTG 96 (254)
T ss_pred CcceeHHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHH
Confidence 4678888888887 566788888887776665
No 63
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=28.05 E-value=1.3e+02 Score=25.05 Aligned_cols=29 Identities=21% Similarity=0.131 Sum_probs=16.2
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023868 82 PSSLQVATSVLLTGAISVFLFRALRRRAK 110 (276)
Q Consensus 82 ~splQ~a~sv~ltg~i~vfl~R~~rrRa~ 110 (276)
++|-=-...+++.+++++++++..|||-+
T Consensus 19 ~a~GWwll~~lll~~~~~~~~~~~r~~~~ 47 (146)
T PF14316_consen 19 LAPGWWLLLALLLLLLILLLWRLWRRWRR 47 (146)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45544455555566666666665555543
No 64
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=28.02 E-value=2.8e+02 Score=24.97 Aligned_cols=56 Identities=27% Similarity=0.387 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023868 151 VQALLGGLTAGVIAIILYKFTTTIEAALNRQTISDNFSVRQITITIRTIVNGLCYLATFVF 211 (276)
Q Consensus 151 Lq~L~GAliAgvlA~llY~LT~sI~asF~~p~~SdN~~A~~Ia~aVRTLVvGL~yLATFiF 211 (276)
...++|++++|++|+..-.+. ...+....+... ....-..+=++++.++++.|+.|
T Consensus 13 ~~illg~~iGg~~G~~~~~~~----~~~~~~~~~~~~-~~~~~~~i~~~~~~i~~~~~~~~ 68 (248)
T PF11368_consen 13 LLILLGGLIGGFIGFFIGRIG----NLLDNISFSTFF-NIPWISFIALLIIIILFLLTFYF 68 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----hhhcccchHHHH-HHHHHHHHHHHHHHHHHHHHHHH
No 65
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=28.00 E-value=1.1e+02 Score=22.15 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=28.3
Q ss_pred cHHHHHHHhhhcCCCCCCCCCCChhHHHHHHHHHH
Q 023868 127 KDEALDNLKALGSSSIDAKGPPSPVQALLGGLTAG 161 (276)
Q Consensus 127 ~ee~~e~lka~~~~~i~~q~~~tPLq~L~GAliAg 161 (276)
.+|+.+.++..+.+.++.+++++.++.++......
T Consensus 23 ~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~f~~~ 57 (69)
T PF00690_consen 23 SEEVEERRKKYGPNELPEPKKKSLWRIFLKQFKNP 57 (69)
T ss_dssp HHHHHHHHHHHSSSSTTTTTSSSHHHHHHHHTTSH
T ss_pred HHHHHHHHHhcccccccccccCcHHHHHHHHHHhH
Confidence 36667777788899999999999999998886443
No 66
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=27.80 E-value=67 Score=29.99 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023868 84 SLQVATSVLLTGAISVFLFRALRRRAKRAK 113 (276)
Q Consensus 84 plQ~a~sv~ltg~i~vfl~R~~rrRa~rAk 113 (276)
-+|+..++++..+..+++.|.+.||.+-.+
T Consensus 68 l~qmi~aL~~VI~Liy~l~rwL~rR~~~~~ 97 (219)
T PRK13415 68 FVKLIGATLFVIFLIYALVKWLNKRNRLLK 97 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 589999999999999999999999977653
No 67
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=27.29 E-value=73 Score=26.16 Aligned_cols=15 Identities=27% Similarity=0.576 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhhhh
Q 023868 101 LFRALRRRAKRAKEL 115 (276)
Q Consensus 101 l~R~~rrRa~rAke~ 115 (276)
.+|--|||.|+.+|.
T Consensus 35 ~~RpqkK~~k~~~~~ 49 (106)
T PRK05585 35 IIRPQQKRQKEHKKM 49 (106)
T ss_pred hccHHHHHHHHHHHH
Confidence 346666666666553
No 68
>PRK11114 cellulose synthase regulator protein; Provisional
Probab=27.18 E-value=77 Score=33.51 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023868 87 VATSVLLTGAISVFLFRALRRRAKRA 112 (276)
Q Consensus 87 ~a~sv~ltg~i~vfl~R~~rrRa~rA 112 (276)
...+++...++++-++|++|+|++|.
T Consensus 728 ~~~~~~~~~l~~~~~~~~Lr~~~~rR 753 (756)
T PRK11114 728 ALLAALSVLLLALVLWRLLRRIARRR 753 (756)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777788889999999999885
No 69
>PF01569 PAP2: PAP2 superfamily This family includes the following Prosite family; InterPro: IPR000326 This entry represents type 2 phosphatidic acid phosphatase (PAP2; 3.1.3.4 from EC) enzymes, such as phosphatidylglycerophosphatase B 3.1.3.27 from EC from Escherichia coli. PAP2 enzymes have a core structure consisting of a 5-helical bundle, where the beginning of the third helix binds the cofactor []. PAP2 enzymes catalyse the dephosphorylation of phosphatidate, yielding diacylglycerol and inorganic phosphate []. In eukaryotic cells, PAP activity has a central role in the synthesis of phospholipids and triacylglycerol through its product diacylglycerol, and it also generates and/or degrades lipid-signalling molecules that are related to phosphatidate. Other related enzymes have a similar core structure, including haloperoxidases such as bromoperoxidase (contains one core bundle, but forms a dimer), chloroperoxidases (contains two core bundles arranged as in other family dimers), bacitracin transport permease from Bacillus licheniformis, glucose-6-phosphatase from rat. The vanadium-dependent haloperoxidases exclusively catalyse the oxidation of halides, and act as histidine phosphatases, using histidine for the nucleophilic attack in the first step of the reaction []. Amino acid residues involved in binding phosphate/vanadate are conserved between the two families, supporting a proposal that vanadium passes through a tetrahedral intermediate during the reaction mechanism.; GO: 0003824 catalytic activity, 0016020 membrane; PDB: 1QI9_B 1IW8_A 1EOI_A 1D2T_A 1QHB_D 1UP8_C 2IPB_A 1VNS_A 1VNF_A 1VNE_A ....
Probab=27.10 E-value=41 Score=25.58 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=24.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023868 80 DEPSSLQVATSVLLTGAISVFLFRALRRRA 109 (276)
Q Consensus 80 d~~splQ~a~sv~ltg~i~vfl~R~~rrRa 109 (276)
.--.+.|+..|.++..++.+++.+..+||.
T Consensus 99 g~H~~~Dvi~G~~lg~~~~~~~~~~~~~~~ 128 (129)
T PF01569_consen 99 GAHFFSDVIAGILLGILIAYLFYRVYKKRR 128 (129)
T ss_dssp TSS-HHHHHHHHHHHHHHHHHHCCHCHHH-
T ss_pred CeEehHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 344688999999999999999999998885
No 70
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=27.09 E-value=1.5e+02 Score=27.31 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=15.3
Q ss_pred CCCChhHHHHHHHHHHHHHHHH
Q 023868 146 GPPSPVQALLGGLTAGVIAIIL 167 (276)
Q Consensus 146 ~~~tPLq~L~GAliAgvlA~ll 167 (276)
.+.++.|.+.||+++.+.+.++
T Consensus 29 ~~~~~~Rll~~A~~Gal~~~~~ 50 (293)
T PF03419_consen 29 RRASRWRLLLGAAIGALYSLLI 50 (293)
T ss_pred CCCcHHHHHHHHHHHHHHHHHH
Confidence 3566778888888877776443
No 71
>PF08369 PCP_red: Proto-chlorophyllide reductase 57 kD subunit; InterPro: IPR013580 This domain is found in bacteria and plant chloroplast proteins. It often appears at the C-terminal of nitrogenase component 1 type oxidoreductases (IPR000510 from INTERPRO) and sometimes independently in bacterial proteins such as the proto-chlorophyllide reductase subunit B of the cyanobacterium Synechocystis. This domain is also associated with chlorophyllide reductase subunit Z, converts chlorophylls (Chl) into bacteriochlorophylls (BChl) by reducing ring B of the tetrapyrrole.; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0055114 oxidation-reduction process; PDB: 2KRU_A 2L09_A.
Probab=26.86 E-value=96 Score=21.88 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=18.8
Q ss_pred HHHHHHHhhhhhhcccCCCCCccHHHHHHH
Q 023868 105 LRRRAKRAKELKFRSSGAKKSLKDEALDNL 134 (276)
Q Consensus 105 ~rrRa~rAke~r~rs~g~~k~~~ee~~e~l 134 (276)
+|+|+|++-|.--|..| .+.+..|.++..
T Consensus 16 vR~~~r~~~E~~Ar~~G-~~~IT~e~v~~A 44 (45)
T PF08369_consen 16 VRKKLRDAAEKYARERG-YDEITVEVVDAA 44 (45)
T ss_dssp HHHHHHHHHHHHHHHCT--SEE-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-CCeECHHHHHhh
Confidence 45899988886656666 566777766654
No 72
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=26.40 E-value=65 Score=25.62 Aligned_cols=25 Identities=40% Similarity=0.469 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 023868 90 SVLLTGAISVFLFRALRRRAKRAKE 114 (276)
Q Consensus 90 sv~ltg~i~vfl~R~~rrRa~rAke 114 (276)
-+++...+.|.+.|..||.-|-+||
T Consensus 18 i~V~~~~~~wi~~Ra~~~~DKT~~e 42 (72)
T PF13268_consen 18 ILVLLVSGIWILWRALRKKDKTAKE 42 (72)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcHHH
Confidence 3344445678888888887777776
No 73
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=26.31 E-value=64 Score=31.17 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=33.4
Q ss_pred cccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023868 75 IFATTDEPSSLQVATSVLLTGAISVFLFRALRRRAKRAKE 114 (276)
Q Consensus 75 ~~~~~d~~splQ~a~sv~ltg~i~vfl~R~~rrRa~rAke 114 (276)
.+...++.+..|+|+.|++|.++.=++...+-||.++.+.
T Consensus 281 ~~~~~~~~at~~VA~~vivt~il~P~l~~~~~k~~~~~~~ 320 (326)
T PRK05274 281 SFAPFAPAATAQVAAAVIVTAILAPILTAWWSKRVGKRAA 320 (326)
T ss_pred ccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 4455688889999999999999999999999888886553
No 74
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=26.27 E-value=48 Score=28.31 Aligned_cols=34 Identities=24% Similarity=0.195 Sum_probs=27.9
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023868 81 EPSSLQVATSVLLTGAISVFLFRALRRRAKRAKE 114 (276)
Q Consensus 81 ~~splQ~a~sv~ltg~i~vfl~R~~rrRa~rAke 114 (276)
-+.++|.+.-..+..+..++.-|.+|||-++-++
T Consensus 45 ~~~~~q~v~f~~lsv~~~~l~rr~~~~~~~~~~~ 78 (140)
T COG1585 45 LSWWLQLVLFAILSVLLALLGRRFVRRRLKPSDG 78 (140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Confidence 4568999999999998888888888888777664
No 75
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=26.13 E-value=67 Score=25.26 Aligned_cols=16 Identities=38% Similarity=0.644 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhhhh
Q 023868 100 FLFRALRRRAKRAKEL 115 (276)
Q Consensus 100 fl~R~~rrRa~rAke~ 115 (276)
|++|--|||.|+-+|.
T Consensus 19 ~~~rpqkK~~k~~~~m 34 (84)
T TIGR00739 19 LIIRPQRKRRKAHKKL 34 (84)
T ss_pred heechHHHHHHHHHHH
Confidence 4446667776666653
No 76
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=26.01 E-value=47 Score=31.93 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHhhhhh
Q 023868 87 VATSVLLTGAISVFLFRAL--RRRAKRAKELK 116 (276)
Q Consensus 87 ~a~sv~ltg~i~vfl~R~~--rrRa~rAke~r 116 (276)
++.|+++.|+++++.+..+ +||.|+++=||
T Consensus 219 ~~~G~~~L~ll~~lv~~~vr~krk~k~~eMEr 250 (278)
T PF06697_consen 219 VVGGVVLLGLLSLLVAMLVRYKRKKKIEEMER 250 (278)
T ss_pred ehHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 5788888888866555544 34444444444
No 77
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=25.26 E-value=87 Score=26.21 Aligned_cols=10 Identities=30% Similarity=0.388 Sum_probs=4.5
Q ss_pred HHHHHHHhhh
Q 023868 105 LRRRAKRAKE 114 (276)
Q Consensus 105 ~rrRa~rAke 114 (276)
.|+.-||+||
T Consensus 22 iRPQkKr~K~ 31 (109)
T PRK05886 22 SRRQRKAMQA 31 (109)
T ss_pred ccHHHHHHHH
Confidence 4444444443
No 78
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=25.07 E-value=3.1e+02 Score=20.75 Aligned_cols=47 Identities=32% Similarity=0.396 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCCccHHHHHHHhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 023868 101 LFRALRRRAKRAKELKFRSSGAKKSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLTAGVIAIILYKFTTT 173 (276)
Q Consensus 101 l~R~~rrRa~rAke~r~rs~g~~k~~~ee~~e~lka~~~~~i~~q~~~tPLq~L~GAliAgvlA~llY~LT~s 173 (276)
|++--+|=.|+++ |+..||=..-.|+ +.+|=++-|.+||+.+-+.+-
T Consensus 13 f~~d~~rvl~~~~----------KPd~~Ef~~ia~~----------------~~iG~~i~G~iGf~Ikli~~~ 59 (61)
T PRK09400 13 FLEDYKRVLKVAR----------KPTREEFLLVAKV----------------TGLGILLIGLIGFIIYLIMTL 59 (61)
T ss_pred HHHHHHHHHHHhc----------CCCHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555 6777776655554 679999999999998877653
No 79
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=24.70 E-value=6.1e+02 Score=26.21 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=27.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 023868 83 SSLQVATSVLLTGAISVFLFRALRRRAKRAKELKF 117 (276)
Q Consensus 83 splQ~a~sv~ltg~i~vfl~R~~rrRa~rAke~r~ 117 (276)
-|.|.+ |+++..+++|++-|.=|||..++...+.
T Consensus 179 iP~~i~-Gl~~vl~lA~~lG~kErkRlg~~~~~~~ 212 (433)
T COG2851 179 IPIQII-GLVLVLALAWLLGKKERKRLGVIDLSEE 212 (433)
T ss_pred hHHHHH-HHHHHHHHHHHhhHHHHHHhhhccCchh
Confidence 578875 6777777999999999999999887443
No 80
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=24.56 E-value=1.3e+02 Score=21.56 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=24.9
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023868 82 PSSLQVATSVLLTGAISVFLFRALRRRAKRAK 113 (276)
Q Consensus 82 ~splQ~a~sv~ltg~i~vfl~R~~rrRa~rAk 113 (276)
+.-|--....++|..+.+|+.|.+.|..++++
T Consensus 10 ~vGL~Sl~vI~~~igm~~~~~~~F~~k~~~~~ 41 (42)
T PF11346_consen 10 DVGLMSLIVIVFTIGMGVFFIRYFIRKMKEDE 41 (42)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 34456667778888999999999998877654
No 81
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=24.49 E-value=5.8e+02 Score=23.78 Aligned_cols=30 Identities=27% Similarity=0.265 Sum_probs=16.8
Q ss_pred ChhhHHHHHHHHHHHHHHH----------HHHHHHHHHHh
Q 023868 83 SSLQVATSVLLTGAISVFL----------FRALRRRAKRA 112 (276)
Q Consensus 83 splQ~a~sv~ltg~i~vfl----------~R~~rrRa~rA 112 (276)
+++...++-++..++..++ ||.++|++-++
T Consensus 132 ~~~r~~~s~~~~~l~~~~~g~~~~d~~~gfr~~~r~~~~~ 171 (325)
T PRK10714 132 SWFRKTASKMINRLIQRTTGKAMGDYGCMLRAYRRHIVDA 171 (325)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCCCcCeEEEcHHHHHH
Confidence 5666666656555554442 45666666554
No 82
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.15 E-value=4.2e+02 Score=22.07 Aligned_cols=84 Identities=20% Similarity=0.239 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHHHH---HHHHHHHHHhcc-CCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023868 151 VQALLGGLTAGVIAIIL---YKFTTTIEAALN-RQTISD--NFSVRQITITIRTIVNGLCYLATFVFGINSVGLFLYSGQ 224 (276)
Q Consensus 151 Lq~L~GAliAgvlA~ll---Y~LT~sI~asF~-~p~~Sd--N~~A~~Ia~aVRTLVvGL~yLATFiFa~~alGL~LLaIQ 224 (276)
+|+=+++.+|..+|..+ |-+...|.+-+. .|+..+ ....+++...+=..++|+.+...+-+...++|++++-.-
T Consensus 8 iKtaiA~~la~~ia~~l~~~~~~~A~i~Ail~~q~T~~~S~~~~~~Ri~~~~iG~~~a~~~~~~~g~~~~~~~l~v~i~i 87 (141)
T PF06081_consen 8 IKTAIAAFLAILIAQLLGLQYPFFAPIAAILSMQPTVYRSLKQGLNRILGTLIGALLALLFFLILGYNPLSIGLAVIITI 87 (141)
T ss_pred HHHHHHHHHHHHHHHHHCCCchHHHHHHHhheeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHH
Confidence 34556666666666544 233445555554 444433 455667777777788888877777777788888877666
Q ss_pred HhhhhcccCC
Q 023868 225 LALNSFTEDS 234 (276)
Q Consensus 225 Ll~q~lt~~~ 234 (276)
.+.+++.-++
T Consensus 88 ~~~~~l~~~~ 97 (141)
T PF06081_consen 88 PICNWLKLGE 97 (141)
T ss_pred HHHHHhCCCC
Confidence 6666655443
No 83
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=24.06 E-value=88 Score=30.53 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=28.7
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023868 78 TTDEPSSLQVATSVLLTGAISVFLFRALRRRAKRA 112 (276)
Q Consensus 78 ~~d~~splQ~a~sv~ltg~i~vfl~R~~rrRa~rA 112 (276)
+--+.-.-|+|++|+.|....=++...+-||.++.
T Consensus 276 ~~~~~Ataqvaa~vivTail~P~~t~~~~k~~~~~ 310 (312)
T PRK12460 276 PVAAAATAQVAASVIVTAILTPLLTSWVAKKEAKK 310 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33445668999999999999999999998887753
No 84
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=23.98 E-value=1.3e+02 Score=23.40 Aligned_cols=11 Identities=36% Similarity=0.555 Sum_probs=4.2
Q ss_pred HHHHHHHHhhh
Q 023868 104 ALRRRAKRAKE 114 (276)
Q Consensus 104 ~~rrRa~rAke 114 (276)
..|.+-||.||
T Consensus 19 ~~rpqkk~~k~ 29 (82)
T PF02699_consen 19 MIRPQKKQQKE 29 (82)
T ss_dssp THHHHHHHHHH
T ss_pred eecHHHHHHHH
Confidence 33333333333
No 85
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=23.89 E-value=80 Score=30.94 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=28.9
Q ss_pred ccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023868 76 FATTDEPSSLQVATSVLLTGAISVFLFRALRRRAK 110 (276)
Q Consensus 76 ~~~~d~~splQ~a~sv~ltg~i~vfl~R~~rrRa~ 110 (276)
|++--+...-|+|++|+.|.++.=++...+-||.|
T Consensus 280 ~~~~~~~ATaQvAaavIvTail~P~lt~~~~kr~k 314 (314)
T PF03812_consen 280 FAPYAASATAQVAAAVIVTAILTPILTSWWAKRFK 314 (314)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44444455689999999999999999999999975
No 86
>PF09945 DUF2177: Predicted membrane protein (DUF2177); InterPro: IPR018687 This family of putative membrane proteins has no known function.
Probab=23.87 E-value=1.3e+02 Score=25.84 Aligned_cols=29 Identities=31% Similarity=0.280 Sum_probs=25.5
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 023868 145 KGPPSPVQALLGGLTAGVIAIILYKFTTT 173 (276)
Q Consensus 145 q~~~tPLq~L~GAliAgvlA~llY~LT~s 173 (276)
-.+.+|.+++..++.=|.++|+.|.||+-
T Consensus 68 l~~~s~~~a~~~GallGl~~YgtYdlTN~ 96 (128)
T PF09945_consen 68 LAAGSWLRALLYGALLGLFAYGTYDLTNL 96 (128)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 35678999999999999999999999973
No 87
>cd02437 CCC1_like_1 CCC1-related protein family. CCC1_like_1: This is a protein family closely related to CCC1, a family of proteins involved in iron and manganese transport. Yeast CCC1 is a vacuole transmembrane protein responsible for the iron and manganese accumulation in vacuole.
Probab=23.84 E-value=4.7e+02 Score=22.52 Aligned_cols=23 Identities=17% Similarity=-0.058 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023868 87 VATSVLLTGAISVFLFRALRRRA 109 (276)
Q Consensus 87 ~a~sv~ltg~i~vfl~R~~rrRa 109 (276)
...+.++.|+++--+-..+-.|+
T Consensus 38 ~Gla~~iA~a~Sma~g~yvs~~~ 60 (175)
T cd02437 38 AGLGGAFALGISNGLGAAVAEEG 60 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666777666655554444
No 88
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=23.35 E-value=68 Score=25.66 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 023868 91 VLLTGAISVFLFRALRRRAKRAKEL 115 (276)
Q Consensus 91 v~ltg~i~vfl~R~~rrRa~rAke~ 115 (276)
++++|+++|.|.+-+.|+-++.|.-
T Consensus 34 fiisa~lSwkLaK~ie~~ere~K~k 58 (74)
T PF15086_consen 34 FIISAVLSWKLAKAIEKEEREKKKK 58 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999988887753
No 89
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=23.29 E-value=4e+02 Score=29.39 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 023868 151 VQALLGGLTAGVIAIILYKFTTTIE 175 (276)
Q Consensus 151 Lq~L~GAliAgvlA~llY~LT~sI~ 175 (276)
++|+.|.++++++||++-++...+.
T Consensus 210 ~~i~~GiliG~vvG~l~~~Ll~~l~ 234 (810)
T TIGR00844 210 WECIFGSILGCIIGYCGRKAIRFAE 234 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888888888888888776654
No 90
>PF14163 SieB: Superinfection exclusion protein B
Probab=23.18 E-value=2e+02 Score=24.02 Aligned_cols=14 Identities=29% Similarity=0.223 Sum_probs=9.5
Q ss_pred CccHHHHHHHhhhc
Q 023868 125 SLKDEALDNLKALG 138 (276)
Q Consensus 125 ~~~ee~~e~lka~~ 138 (276)
+++++++.=|+..-
T Consensus 78 ~Lt~~EkavL~~~~ 91 (151)
T PF14163_consen 78 SLTPEEKAVLREFY 91 (151)
T ss_pred hCCHHHHHHHHHHH
Confidence 67777776666654
No 91
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.03 E-value=73 Score=26.54 Aligned_cols=21 Identities=19% Similarity=0.453 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023868 153 ALLGGLTAGVIAIILYKFTTT 173 (276)
Q Consensus 153 ~L~GAliAgvlA~llY~LT~s 173 (276)
+++|.+++++|||++.+++.+
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~ 22 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSS 22 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhcc
Confidence 478888999999998888763
No 92
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=22.81 E-value=1.2e+02 Score=27.09 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023868 85 LQVATSVLLTGAISVFLFRALRRRAKRAKE 114 (276)
Q Consensus 85 lQ~a~sv~ltg~i~vfl~R~~rrRa~rAke 114 (276)
++++++.++-++.+|++.|..+||-++..+
T Consensus 104 ~~~~~~~~lg~~l~fl~~r~ysRkl~~~~~ 133 (150)
T COG3086 104 LIVIFGAFLGLALGFLLARRYSRKLAKRTE 133 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 567777777788888888888888776554
No 93
>PF14264 Glucos_trans_II: Glucosyl transferase GtrII
Probab=22.44 E-value=5.9e+02 Score=23.09 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 023868 156 GGLTAGVIAIILYKFTTTIEAAL 178 (276)
Q Consensus 156 GAliAgvlA~llY~LT~sI~asF 178 (276)
-.+...++|+++|.+..++....
T Consensus 175 ~~~~~~~~g~~lY~i~~k~~~~~ 197 (319)
T PF14264_consen 175 KSLAVLIIGLLLYFIINKIILYL 197 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888999999999886554
No 94
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=22.25 E-value=3.9e+02 Score=21.27 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=29.7
Q ss_pred CCccHHHHHHHhhhcCCCCCCC-CCCC---hhHHHHHHHHHHHHHHHHHHH
Q 023868 124 KSLKDEALDNLKALGSSSIDAK-GPPS---PVQALLGGLTAGVIAIILYKF 170 (276)
Q Consensus 124 k~~~ee~~e~lka~~~~~i~~q-~~~t---PLq~L~GAliAgvlA~llY~L 170 (276)
++..|+=+|..|.+.+...+.. ...+ -+..++.++++.++..++-.+
T Consensus 17 ddDf~~Fi~vVksVltdk~~~~~~~~~~~~~~~~~ii~ii~v~ii~~l~fl 67 (72)
T PF12575_consen 17 DDDFNNFINVVKSVLTDKKKLKNNKNNKNFNWIILIISIIFVLIIVLLTFL 67 (72)
T ss_pred HHHHHHHHHHHHHHHcCCccccccCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888875554322 2222 244688888888888777444
No 95
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=22.25 E-value=8.4e+02 Score=24.83 Aligned_cols=81 Identities=21% Similarity=0.176 Sum_probs=44.8
Q ss_pred Chhh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hcccCCCCCccHHHHHHHhhhcCCCCCCCCCCChhHHHHHHHHH
Q 023868 83 SSLQ-VATSVLLTGAISVFLFRALRRRAKRAKELK-FRSSGAKKSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLTA 160 (276)
Q Consensus 83 splQ-~a~sv~ltg~i~vfl~R~~rrRa~rAke~r-~rs~g~~k~~~ee~~e~lka~~~~~i~~q~~~tPLq~L~GAliA 160 (276)
..++ ..+.|++.|.+..++.|.++|+.-...+.. -.....||..|---.|.+|-+..++ -+.|+..-+++
T Consensus 220 ~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~~~~~~~kk~k~k~s~~es~k~l~kS~--------yL~~Ia~lvi~ 291 (491)
T PF03219_consen 220 LSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFYPSAKKKKKKKPKMSLKESFKLLLKSK--------YLLCIALLVIA 291 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchhhhcccccCCCccHHHHHHHHHhCH--------HHHHHHHHHHH
Confidence 3455 445677889999999999999885444321 0111113334444456666665332 45555555555
Q ss_pred HHHHHHHHHHH
Q 023868 161 GVIAIILYKFT 171 (276)
Q Consensus 161 gvlA~llY~LT 171 (276)
-.++.-+-+.+
T Consensus 292 Ygi~inLvE~~ 302 (491)
T PF03219_consen 292 YGISINLVEVV 302 (491)
T ss_pred HHHHHHHHHHH
Confidence 55544444433
No 96
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=22.14 E-value=2.9e+02 Score=25.89 Aligned_cols=28 Identities=11% Similarity=0.050 Sum_probs=14.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 023868 146 GPPSPVQALLGGLTAGVIAIILYKFTTT 173 (276)
Q Consensus 146 ~~~tPLq~L~GAliAgvlA~llY~LT~s 173 (276)
..|.+...+.++++.|++.|+...+...
T Consensus 328 ~~P~~~~~l~~~~~~gl~l~~~~~l~~~ 355 (362)
T TIGR01010 328 LEPYRLYNILATFVILLILYGVLSLLLA 355 (362)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555455555555555555444443
No 97
>PF04346 EutH: Ethanolamine utilisation protein, EutH; InterPro: IPR007441 EutH is a bacterial membrane protein whose molecular function is unknown. It has been suggested that it may act as an ethanolamine transporter, responsible for carrying ethanolamine from the periplasm to the cytoplasm [].; GO: 0006810 transport, 0016021 integral to membrane
Probab=22.05 E-value=7.8e+02 Score=24.69 Aligned_cols=35 Identities=11% Similarity=0.207 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023868 194 ITIRTIVNGLCYLATFVFGINSVGLFLYSGQLALN 228 (276)
Q Consensus 194 ~aVRTLVvGL~yLATFiFa~~alGL~LLaIQLl~q 228 (276)
..=+..+.|.-+++.++-.++.+||++..+|.+..
T Consensus 188 ~~p~~mIkgF~~fGk~i~~~~~igL~~~~~e~~tG 222 (354)
T PF04346_consen 188 FFPEKMIKGFNIFGKFIVILITIGLAAAIVEYLTG 222 (354)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33478899999999999999999999999998876
No 98
>PF02681 DUF212: Divergent PAP2 family; InterPro: IPR003832 This family is related to the acid phosphatase/vanadium-dependent haloperoxidases; members of this group are uncharacterised.
Probab=22.00 E-value=2.4e+02 Score=24.61 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=17.1
Q ss_pred CCCCCChhHHHHHHHHHHHHH
Q 023868 144 AKGPPSPVQALLGGLTAGVIA 164 (276)
Q Consensus 144 ~q~~~tPLq~L~GAliAgvlA 164 (276)
+--.-||++.+.|+++..++|
T Consensus 121 E~lGHtp~EV~~G~llGi~vA 141 (141)
T PF02681_consen 121 ELLGHTPLEVFAGALLGIVVA 141 (141)
T ss_pred ccCCCCHHHHHHHHHHHHhhC
Confidence 335789999999999987764
No 99
>TIGR03262 PhnU2 putative 2-aminoethylphosphonate ABC transporter, permease protein.
Probab=21.68 E-value=7.9e+02 Score=24.27 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q 023868 95 GAISVFLFRALRRR 108 (276)
Q Consensus 95 g~i~vfl~R~~rrR 108 (276)
.++.+++.|.++||
T Consensus 246 ~~~~~~~~~~~~~~ 259 (546)
T TIGR03262 246 ALLAFGIDRAIQRR 259 (546)
T ss_pred HHHHHHHHHHHHhc
Confidence 34444445556655
No 100
>COG1963 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.56 E-value=1.1e+02 Score=27.46 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHH
Q 023868 82 PSSLQVATSVLLTGAISVFLFRAL 105 (276)
Q Consensus 82 ~splQ~a~sv~ltg~i~vfl~R~~ 105 (276)
-+|+||-+|+++-.+++|.+.+.+
T Consensus 128 H~p~eV~~G~~lGI~i~~i~~~~~ 151 (153)
T COG1963 128 HTPLEVFAGLLLGILIAWIFYAFF 151 (153)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999887654
No 101
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=21.38 E-value=1e+02 Score=25.10 Aligned_cols=30 Identities=27% Similarity=0.352 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023868 85 LQVATSVLLTGAISVFLFRALRRRAKRAKE 114 (276)
Q Consensus 85 lQ~a~sv~ltg~i~vfl~R~~rrRa~rAke 114 (276)
+..+.+-++..++++++.|.++||.++..+
T Consensus 97 ~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~ 126 (135)
T PF04246_consen 97 LWAILGGLLGLALGFLILRLFDRRLKKKSK 126 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Confidence 334444455566778888888888776544
No 102
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=21.20 E-value=1.2e+02 Score=25.46 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023868 91 VLLTGAISVFLFRALRRRAKRAKELK 116 (276)
Q Consensus 91 v~ltg~i~vfl~R~~rrRa~rAke~r 116 (276)
+++.++..+|+.|-=|||.|+.++.+
T Consensus 11 v~i~~i~yF~~iRPQkKr~K~~~~m~ 36 (109)
T PRK05886 11 LLIMGGFMYFASRRQRKAMQATIDLH 36 (109)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 34455566778899999999999855
No 103
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=21.12 E-value=1.3e+02 Score=23.32 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023868 91 VLLTGAISVFLFRALRRRAKRAKELK 116 (276)
Q Consensus 91 v~ltg~i~vfl~R~~rrRa~rAke~r 116 (276)
+++.++..+|..|-=|||.|+.++..
T Consensus 9 v~~~~i~yf~~~rpqkk~~k~~~~m~ 34 (82)
T PF02699_consen 9 VIIFVIFYFLMIRPQKKQQKEHQEML 34 (82)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTGG
T ss_pred HHHHHHHhhheecHHHHHHHHHHHHH
Confidence 45666667778999999999999954
No 104
>PHA02758 hypothetical protein; Provisional
Probab=20.84 E-value=2.9e+02 Score=26.81 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Q 023868 189 VRQITITIRTIVNGLCYLATFVFGINSVGLFLYSGQLALNSFTEDSS 235 (276)
Q Consensus 189 A~~Ia~aVRTLVvGL~yLATFiFa~~alGL~LLaIQLl~q~lt~~~~ 235 (276)
|.-.+.++-+.++|.+-+.--.|.+.+-||..|++.-+++.+.-+-.
T Consensus 9 ~svea~aisiaiv~fail~fslfsil~aglaflgi~ai~~sw~ld~~ 55 (321)
T PHA02758 9 ASVEAAAISIAIVGFAILEFSLFSILAAGLAFLGILAIFDSWGLDAA 55 (321)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 33456677788899999999999999999999999999998875443
No 105
>PF04240 DUF422: Protein of unknown function (DUF422); InterPro: IPR007354 The proteins in this entry are predicted to be an integral membrane proteins.
Probab=20.84 E-value=76 Score=28.71 Aligned_cols=28 Identities=36% Similarity=0.295 Sum_probs=23.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023868 83 SSLQVATSVLLTGAISVFLFRALRRRAK 110 (276)
Q Consensus 83 splQ~a~sv~ltg~i~vfl~R~~rrRa~ 110 (276)
-|+||=.|=.+++++...++|.+-||.+
T Consensus 142 iPl~Nf~GW~~v~~i~~~~~~~~~~~~~ 169 (214)
T PF04240_consen 142 IPLSNFLGWFLVSFIFMALLRLLFRRAK 169 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7999999999999999888887655543
No 106
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=20.83 E-value=2.4e+02 Score=25.40 Aligned_cols=57 Identities=25% Similarity=0.291 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-------ccCCCCCccHHHHHHHhhhcCCCCCCC
Q 023868 88 ATSVLLTGAISVFLFRALRRRAKRAKELKFR-------SSGAKKSLKDEALDNLKALGSSSIDAK 145 (276)
Q Consensus 88 a~sv~ltg~i~vfl~R~~rrRa~rAke~r~r-------s~g~~k~~~ee~~e~lka~~~~~i~~q 145 (276)
..-++|.+++.|.+|=..+|+.-|=+- |.| ..|+.|++++|-...|..+.+-..+++
T Consensus 14 vlv~a~g~l~~vllfIfaKRQI~Rf~l-rsrrgphvp~G~~a~K~lk~eIe~rL~~v~~i~~EP~ 77 (186)
T PF07406_consen 14 VLVIAYGSLVFVLLFIFAKRQIMRFAL-RSRRGPHVPVGHGAPKSLKEEIERRLSRVQKIKYEPQ 77 (186)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHHH-hccCCCcccccCCCcHhHHHHHHHHHhhhhheeecCc
Confidence 333445555556666666666655442 333 225689999998877777776555554
No 107
>PRK13952 mscL large-conductance mechanosensitive channel; Provisional
Probab=20.31 E-value=2.4e+02 Score=24.57 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=21.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023868 83 SSLQVATSVLLTGAISVFLFRALRRRAKR 111 (276)
Q Consensus 83 splQ~a~sv~ltg~i~vfl~R~~rrRa~r 111 (276)
.-+|+...++.++++.+++.+.+.| .+|
T Consensus 87 ~fl~avInFlIiA~vvf~ivk~~nk-~~~ 114 (142)
T PRK13952 87 NFITVLINFLILAFIIFLMVKAINR-LRR 114 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence 4588899999999999888887753 443
No 108
>PF03899 ATP_synt_I: ATP synthase I chain; InterPro: IPR005598 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The atp operon of most prokaryotes contains the structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein of unknown function. A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex []. A role in magnesium uptake has also been suggested []. More information about this protein can be found at Protein of the Month: ATP synthases [].
Probab=20.02 E-value=2.3e+02 Score=20.94 Aligned_cols=30 Identities=43% Similarity=0.442 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023868 85 LQVATSVLLTGAISVFLFRALRRRAKRAKE 114 (276)
Q Consensus 85 lQ~a~sv~ltg~i~vfl~R~~rrRa~rAke 114 (276)
.+.+.|+++-+++++.-++.+.+|.+|-++
T Consensus 23 ~~~~~s~~~G~~i~~~~~~~~~~~~~~~~~ 52 (100)
T PF03899_consen 23 WPVALSFLLGGLISLLNFFLLARRVFRLAG 52 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 358899999999999999999999966553
Done!