Query 023868
Match_columns 276
No_of_seqs 76 out of 78
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 14:09:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023868.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023868hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2oara1 f.16.1.1 (A:10-118) Ga 31.3 22 0.0016 26.4 3.8 31 83-113 62-92 (109)
2 d2uuia1 f.56.1.1 (A:2-147) Leu 12.5 2.6E+02 0.019 20.7 6.8 23 87-109 8-30 (146)
3 d2e74f1 f.23.25.1 (F:1-32) Pet 10.0 1.8E+02 0.013 17.4 3.8 10 215-224 21-30 (32)
4 d2hyda2 f.37.1.1 (A:1-323) Put 9.9 2.3E+02 0.017 20.5 5.3 20 95-114 171-190 (323)
5 d2pila_ d.24.1.1 (A:) Pilin Gc 9.6 2.3E+02 0.017 18.7 4.9 30 87-116 6-35 (158)
6 d1wpga4 f.33.1.1 (A:1-124,A:24 9.4 4.8E+02 0.035 21.7 8.2 33 127-159 26-58 (472)
7 d2vv5a3 f.34.1.1 (A:27-112) Me 9.3 2.4E+02 0.018 18.3 8.5 53 155-208 6-59 (86)
8 d2axtj1 f.23.32.1 (J:7-40) Pho 6.3 1.9E+02 0.014 17.6 2.7 17 87-103 9-25 (34)
9 d1v2xa_ c.116.1.1 (A:) tRNA (G 5.9 3.9E+02 0.028 19.8 5.1 32 98-136 158-189 (191)
10 d1xmec1 f.23.9.1 (C:2-34) Bact 5.8 2E+02 0.014 17.3 2.5 19 85-103 14-32 (33)
No 1
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=31.33 E-value=22 Score=26.44 Aligned_cols=31 Identities=16% Similarity=0.124 Sum_probs=20.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023868 83 SSLQVATSVLLTGAISVFLFRALRRRAKRAK 113 (276)
Q Consensus 83 splQ~a~sv~ltg~i~vfl~R~~rrRa~rAk 113 (276)
.-+|....++.++++.+|++-..-.|.||.+
T Consensus 62 ~fi~a~InFlIiA~vv~F~vvk~~n~~~~k~ 92 (109)
T d2oara1 62 VLLSAAINFFLIAFAVYFLVVLPYNTLRKKG 92 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3588888999888877666543344444433
No 2
>d2uuia1 f.56.1.1 (A:2-147) Leukotriene C4 synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.49 E-value=2.6e+02 Score=20.69 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023868 87 VATSVLLTGAISVFLFRALRRRA 109 (276)
Q Consensus 87 ~a~sv~ltg~i~vfl~R~~rrRa 109 (276)
.+.+++....-.||-+|+.+.|.
T Consensus 8 a~vt~l~~i~~~~~s~~V~~~R~ 30 (146)
T d2uuia1 8 AAVTLLGVLLQAYFSLQVISARR 30 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455566677777665
No 3
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=9.97 E-value=1.8e+02 Score=17.38 Aligned_cols=10 Identities=30% Similarity=0.497 Sum_probs=5.1
Q ss_pred HHHHHHHHHH
Q 023868 215 SVGLFLYSGQ 224 (276)
Q Consensus 215 alGL~LLaIQ 224 (276)
++|-.+|-||
T Consensus 21 glgalllkiq 30 (32)
T d2e74f1 21 GLGVLLLKIQ 30 (32)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhc
Confidence 4445555554
No 4
>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}
Probab=9.89 E-value=2.3e+02 Score=20.53 Aligned_cols=20 Identities=5% Similarity=0.042 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 023868 95 GAISVFLFRALRRRAKRAKE 114 (276)
Q Consensus 95 g~i~vfl~R~~rrRa~rAke 114 (276)
..+.++..+.+.||.++..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~ 190 (323)
T d2hyda2 171 FPFYILTVYVFFGRLRKLTR 190 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccccchhH
Confidence 33444445555665555544
No 5
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=9.57 E-value=2.3e+02 Score=18.67 Aligned_cols=30 Identities=13% Similarity=0.244 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023868 87 VATSVLLTGAISVFLFRALRRRAKRAKELK 116 (276)
Q Consensus 87 ~a~sv~ltg~i~vfl~R~~rrRa~rAke~r 116 (276)
...-|+.+|.++.+.+..+++-.+|+|..+
T Consensus 6 LlVViaIIgILaaia~P~~~~~~~~a~~~~ 35 (158)
T d2pila_ 6 LMIVIAIVGILAAVALPAYQDYTARAQVSE 35 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677788888888888888777777544
No 6
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=9.35 E-value=4.8e+02 Score=21.75 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=27.3
Q ss_pred cHHHHHHHhhhcCCCCCCCCCCChhHHHHHHHH
Q 023868 127 KDEALDNLKALGSSSIDAKGPPSPVQALLGGLT 159 (276)
Q Consensus 127 ~ee~~e~lka~~~~~i~~q~~~tPLq~L~GAli 159 (276)
++|+.+.++.-+.++.+.+++++.++.+.....
T Consensus 26 ~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~~~~ 58 (472)
T d1wpga4 26 PDQVKRHLEKYGHNELPAEEGKSLWELVIEQFE 58 (472)
T ss_dssp HHHHHHHHHHSCCSSCCCCCCCCHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHh
Confidence 467788888889999999999999998887653
No 7
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=9.29 E-value=2.4e+02 Score=18.29 Aligned_cols=53 Identities=11% Similarity=0.214 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-ccCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 023868 155 LGGLTAGVIAIILYKFTTTIEAA-LNRQTISDNFSVRQITITIRTIVNGLCYLAT 208 (276)
Q Consensus 155 ~GAliAgvlA~llY~LT~sI~as-F~~p~~SdN~~A~~Ia~aVRTLVvGL~yLAT 208 (276)
+.+++-..++|.+.++..++... +.+... |.....-+...+|.++..++.+..
T Consensus 6 l~~l~il~i~~~i~~~i~~~~~~~~~~~~~-~~~~~~~i~~~~~~~i~~i~~~~~ 59 (86)
T d2vv5a3 6 VAALAIIIVGLIIARMISNAVNRLMISRKI-DATVADFLSALVRYGIIAFTLIAA 59 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666655555443 344333 344355577777777766655543
No 8
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.30 E-value=1.9e+02 Score=17.61 Aligned_cols=17 Identities=6% Similarity=0.272 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023868 87 VATSVLLTGAISVFLFR 103 (276)
Q Consensus 87 ~a~sv~ltg~i~vfl~R 103 (276)
+++|.+.++.+.+||.-
T Consensus 9 tv~G~~vi~~vG~FfYG 25 (34)
T d2axtj1 9 TVAGMGVIVIVGLFFYG 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ehhhhhhHhheeeeeee
Confidence 56788888888888864
No 9
>d1v2xa_ c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH {Thermus thermophilus [TaxId: 274]}
Probab=5.89 E-value=3.9e+02 Score=19.80 Aligned_cols=32 Identities=31% Similarity=0.351 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCccHHHHHHHhh
Q 023868 98 SVFLFRALRRRAKRAKELKFRSSGAKKSLKDEALDNLKA 136 (276)
Q Consensus 98 ~vfl~R~~rrRa~rAke~r~rs~g~~k~~~ee~~e~lka 136 (276)
+++++-..|+|-++--.. ++...+++++.|.+
T Consensus 158 ~I~lyE~~rq~~~~g~~~-------~~~~~~~~~~~l~~ 189 (191)
T d1v2xa_ 158 AVILFEAQRQRLKAGLYD-------RPRLDPELYQKVLA 189 (191)
T ss_dssp HHHHHHHHHHHHHHTGGG-------SCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCC-------CCCCCHHHHHHHHh
Confidence 345666666665442222 35666777777654
No 10
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=5.85 E-value=2e+02 Score=17.31 Aligned_cols=19 Identities=32% Similarity=0.509 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 023868 85 LQVATSVLLTGAISVFLFR 103 (276)
Q Consensus 85 lQ~a~sv~ltg~i~vfl~R 103 (276)
|-...-|...|..+|||.|
T Consensus 14 l~l~ilvfw~gv~avf~ar 32 (33)
T d1xmec1 14 LTLTILVFWLGVYAVFFAR 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcc
Done!