BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023869
         (276 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3NTL|A Chain A, Crystal Structure Of Glucose-1-Phosphatase (Agpe) From
           Enterobacter Cloacae
 pdb|3NTL|B Chain B, Crystal Structure Of Glucose-1-Phosphatase (Agpe) From
           Enterobacter Cloacae
          Length = 398

 Score = 33.1 bits (74), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 27  ACDRRVHHANKLASKHPRFNLV----SPSYKESPLCDICQERRALLFCQ 71
            CD  VHH  K+ +  P FN V    SP ++E  L  +  ER+ +   +
Sbjct: 107 GCDVPVHHQEKMGTMDPTFNPVITDNSPEFREKALKAMETERQKMQLTE 155


>pdb|3GRI|A Chain A, The Crystal Structure Of A Dihydroorotase From
           Staphylococcus Aureus
 pdb|3GRI|B Chain B, The Crystal Structure Of A Dihydroorotase From
           Staphylococcus Aureus
          Length = 424

 Score = 28.5 bits (62), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 31/86 (36%), Gaps = 3/86 (3%)

Query: 5   CDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDICQER 64
           C V  KE   V   A  A + V  +   HH        P  N +   YK +P     ++R
Sbjct: 229 CHVSTKESVRVIRDAKRAGIHVTAEVTPHHLLLTEDDIPGNNAI---YKXNPPLRSTEDR 285

Query: 65  RALLFCQEDRAILCRECDIPIHKASE 90
            ALL    D  I C   D   H   E
Sbjct: 286 EALLEGLLDGTIDCIATDHAPHARDE 311


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,650,460
Number of Sequences: 62578
Number of extensions: 222543
Number of successful extensions: 461
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 455
Number of HSP's gapped (non-prelim): 7
length of query: 276
length of database: 14,973,337
effective HSP length: 97
effective length of query: 179
effective length of database: 8,903,271
effective search space: 1593685509
effective search space used: 1593685509
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)