Query 023869
Match_columns 276
No_of_seqs 172 out of 558
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 14:10:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023869.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023869hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jun_A Midline-1; B-BOX, TRIM, 99.0 3.9E-10 1.3E-14 87.0 6.0 93 2-101 3-100 (101)
2 2dja_A Midline-2; tripartite m 96.1 0.004 1.4E-07 46.3 3.6 60 39-103 2-61 (84)
3 2did_A Tripartite motif protei 95.1 0.015 5.3E-07 39.8 3.1 43 55-103 8-50 (53)
4 2d8u_A Ubiquitin ligase TRIM63 95.0 0.011 3.8E-07 41.7 2.3 44 55-103 8-51 (64)
5 2yvr_A Transcription intermedi 94.6 0.017 5.8E-07 39.0 2.3 43 55-103 6-48 (50)
6 3ddt_A E3 ubiquitin-protein li 94.3 0.019 6.6E-07 38.6 2.0 42 55-101 6-47 (48)
7 2jun_A Midline-1; B-BOX, TRIM, 94.0 0.019 6.5E-07 43.6 1.7 44 55-98 3-49 (101)
8 1fre_A Nuclear factor XNF7; zi 93.8 0.032 1.1E-06 36.3 2.2 28 56-84 4-31 (42)
9 2egm_A Tripartite motif-contai 93.4 0.025 8.7E-07 39.8 1.4 38 46-84 9-46 (57)
10 2yrg_A Tripartite motif-contai 93.3 0.07 2.4E-06 37.6 3.5 43 55-103 14-56 (59)
11 2ffw_A Midline-1; B-BOX, ring 92.7 0.077 2.6E-06 39.7 3.2 44 2-45 30-76 (78)
12 2csv_A Tripartite motif protei 92.7 0.055 1.9E-06 39.2 2.3 56 39-103 4-59 (72)
13 2ffw_A Midline-1; B-BOX, ring 90.5 0.091 3.1E-06 39.2 1.5 45 54-98 29-76 (78)
14 2fc7_A ZZZ3 protein; structure 83.9 2.1 7.2E-05 32.4 5.6 47 56-102 22-75 (82)
15 4hc9_A Trans-acting T-cell-spe 78.2 1.3 4.6E-05 35.6 2.9 82 2-85 5-90 (115)
16 2did_A Tripartite motif protei 72.5 3.1 0.00011 28.0 3.2 39 3-48 9-48 (53)
17 2d8v_A Zinc finger FYVE domain 68.0 4.7 0.00016 30.1 3.5 49 53-103 6-55 (67)
18 1fre_A Nuclear factor XNF7; zi 63.6 2.9 0.0001 26.7 1.5 31 3-34 4-35 (42)
19 2yrg_A Tripartite motif-contai 63.1 6.1 0.00021 27.5 3.2 39 3-48 15-54 (59)
20 2yvr_A Transcription intermedi 61.3 7.3 0.00025 25.7 3.2 40 3-48 7-46 (50)
21 3ddt_A E3 ubiquitin-protein li 55.3 7.9 0.00027 25.4 2.5 31 4-34 8-39 (48)
22 2d8u_A Ubiquitin ligase TRIM63 53.8 8 0.00027 26.6 2.5 41 3-49 9-50 (64)
23 2egm_A Tripartite motif-contai 52.6 6.5 0.00022 27.2 1.8 31 3-34 19-50 (57)
24 2dja_A Midline-2; tripartite m 52.0 11 0.00037 27.3 3.1 39 4-48 20-59 (84)
25 2e5r_A Dystrobrevin alpha; ZZ 51.4 8.8 0.0003 27.5 2.4 43 56-98 12-58 (63)
26 2d8v_A Zinc finger FYVE domain 46.7 19 0.00066 26.7 3.6 47 3-51 9-56 (67)
27 1z60_A TFIIH basal transcripti 44.9 7.5 0.00026 28.0 1.1 32 4-35 17-51 (59)
28 3shb_A E3 ubiquitin-protein li 41.4 21 0.00072 26.5 3.2 38 20-63 39-76 (77)
29 2csv_A Tripartite motif protei 39.1 20 0.00068 25.4 2.7 31 3-34 19-49 (72)
30 2lri_C Autoimmune regulator; Z 38.7 15 0.0005 26.5 1.9 47 3-64 13-59 (66)
31 1z60_A TFIIH basal transcripti 37.0 8 0.00028 27.8 0.3 32 57-88 17-51 (59)
32 3jst_A Putative pterin-4-alpha 36.8 12 0.00041 28.8 1.3 17 169-186 9-25 (97)
33 3pfq_A PKC-B, PKC-beta, protei 36.5 16 0.00054 36.1 2.4 74 4-85 50-148 (674)
34 1mm2_A MI2-beta; PHD, zinc fin 35.8 34 0.0012 23.9 3.4 48 3-65 10-57 (61)
35 2jrp_A Putative cytoplasmic pr 35.7 23 0.00078 27.1 2.6 57 1-83 1-59 (81)
36 1v6g_A Actin binding LIM prote 31.9 19 0.00066 25.5 1.6 64 14-84 3-72 (81)
37 1qxf_A GR2, 30S ribosomal prot 31.8 12 0.0004 27.8 0.4 31 1-32 6-36 (66)
38 3o36_A Transcription intermedi 31.6 33 0.0011 28.5 3.2 47 3-64 5-51 (184)
39 4gne_A Histone-lysine N-methyl 31.1 47 0.0016 26.2 3.9 65 3-84 16-86 (107)
40 2v6u_A Pterin-4A-carbinolamine 30.9 17 0.00059 28.3 1.3 18 168-186 11-28 (104)
41 2ebb_A Pterin-4-alpha-carbinol 30.7 17 0.00058 28.2 1.2 17 169-186 6-22 (101)
42 2ysm_A Myeloid/lymphoid or mix 30.6 40 0.0014 25.7 3.4 68 3-88 8-82 (111)
43 3u5c_b RP61, YS20, 40S ribosom 29.9 17 0.00058 28.0 1.0 31 1-32 33-63 (82)
44 1f62_A Transcription factor WS 29.2 34 0.0012 22.6 2.4 49 4-64 2-50 (51)
45 3j20_W 30S ribosomal protein S 28.6 15 0.0005 27.0 0.5 31 1-32 14-44 (63)
46 2xzm_6 RPS27E; ribosome, trans 27.7 15 0.0005 28.3 0.3 30 1-31 31-60 (81)
47 3iz6_X 40S ribosomal protein S 26.9 16 0.00056 28.3 0.5 31 1-32 35-65 (86)
48 3asl_A E3 ubiquitin-protein li 26.0 56 0.0019 23.5 3.2 17 19-35 30-46 (70)
49 2pv0_B DNA (cytosine-5)-methyl 25.5 35 0.0012 32.7 2.6 72 2-84 50-124 (386)
50 2e6s_A E3 ubiquitin-protein li 25.0 60 0.002 23.9 3.3 17 19-35 38-54 (77)
51 2yqq_A Zinc finger HIT domain- 24.7 30 0.001 24.6 1.5 27 56-83 13-40 (56)
52 2xzl_A ATP-dependent helicase 23.5 22 0.00074 36.5 0.8 109 2-112 11-133 (802)
53 2fc7_A ZZZ3 protein; structure 23.1 1.4E+02 0.005 22.1 5.2 32 2-33 21-59 (82)
54 1x4s_A Protein FON, zinc finge 22.9 27 0.00092 25.2 1.0 29 4-33 13-45 (59)
55 1fp0_A KAP-1 corepressor; PHD 22.6 77 0.0027 24.2 3.6 47 3-64 26-72 (88)
56 3u5n_A E3 ubiquitin-protein li 22.6 48 0.0017 28.1 2.7 47 3-64 8-54 (207)
57 2yql_A PHD finger protein 21A; 22.0 52 0.0018 22.3 2.3 46 3-63 10-55 (56)
58 2dj7_A Actin-binding LIM prote 21.8 37 0.0013 24.3 1.6 58 20-83 13-70 (80)
59 1tot_A CREB-binding protein; z 21.8 37 0.0013 23.4 1.5 31 2-32 6-38 (52)
60 2wjy_A Regulator of nonsense t 21.6 26 0.00089 36.0 0.9 109 2-111 6-130 (800)
61 2yt5_A Metal-response element- 20.5 36 0.0012 23.7 1.2 54 3-65 7-62 (66)
62 1x6a_A LIMK-2, LIM domain kina 20.4 55 0.0019 23.0 2.2 62 15-83 4-72 (81)
63 2yqq_A Zinc finger HIT domain- 20.4 45 0.0015 23.7 1.7 25 4-29 14-39 (56)
64 1faq_A RAF-1; transferase, ser 20.4 35 0.0012 22.5 1.1 26 3-35 15-40 (52)
65 1v5n_A PDI-like hypothetical p 20.1 37 0.0013 25.6 1.3 25 4-34 49-73 (89)
No 1
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=99.01 E-value=3.9e-10 Score=87.04 Aligned_cols=93 Identities=23% Similarity=0.528 Sum_probs=75.3
Q ss_pred CccccccCC---CCceEEeccCccccchhhhhccccCccccCCcccc-cccCCCCCCCCccccccCcceeEecccccccc
Q 023869 2 KIWCDVCDK---EEASVFCSADEAALCVACDRRVHHANKLASKHPRF-NLVSPSYKESPLCDICQERRALLFCQEDRAIL 77 (276)
Q Consensus 2 ~~~Cd~C~~---a~A~vyC~aD~A~LC~~CD~~VHsAN~La~rH~Rv-pL~~p~~k~~pLCDvCqs~pA~vfC~~D~A~L 77 (276)
++.|++|.. .+|+.+|..+.+.||..|...+|..++.+.+|..+ |+.. .......|+.|+..+..+||..|...+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~-~~~~~~~C~~H~~e~l~~fC~~~~~~i 81 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPD-SHIRGLMCLEHEDEKVNMYCVTDDQLI 81 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCS-CCSSCCCCSSCSSSCCCEEETTTTEEE
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccc-cCccCCcCcCcCCCcceEECCCCCCcc
Confidence 468999984 68999999999999999999999988888899987 4332 123456899999999999999999999
Q ss_pred cccccc-CcccCCCccCCcceeeec
Q 023869 78 CRECDI-PIHKASEYTKKHNRFLLT 101 (276)
Q Consensus 78 C~~CD~-~~HsAN~la~rH~RvpL~ 101 (276)
|..|.. ..| +.|...+|.
T Consensus 82 C~~C~~~~~H------~~H~~~~l~ 100 (101)
T 2jun_A 82 CALCKLVGRH------RDHQVAALS 100 (101)
T ss_dssp CHHHHHHTTT------SSSCBCCCC
T ss_pred chhcCCCCCc------CCCCeecCC
Confidence 999987 334 346655553
No 2
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=96.13 E-value=0.004 Score=46.28 Aligned_cols=60 Identities=15% Similarity=0.298 Sum_probs=43.4
Q ss_pred cCCcccccccCCCCCCCCccccccCcceeEeccccccccccccccCcccCCCccCCcceeeecCc
Q 023869 39 ASKHPRFNLVSPSYKESPLCDICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGV 103 (276)
Q Consensus 39 a~rH~RvpL~~p~~k~~pLCDvCqs~pA~vfC~~D~A~LC~~CD~~~HsAN~la~rH~RvpL~g~ 103 (276)
+.+|..+............|+.|+..+..+||..|...+|..|...+. .+.|..++|..+
T Consensus 2 ~~~H~l~~p~~~~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~-----H~~H~~~~l~ea 61 (84)
T 2dja_A 2 SSGSSGVEPVPDTHLRGITCLDHENEKVNMYCVSDDQLICALCKLVGR-----HRDHQVASLNDR 61 (84)
T ss_dssp CCCCCCCCCCCCCCSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTST-----TTTCCBCCCCSS
T ss_pred CCCCcccCCCCCCCCCCCcCcCcCCccccEEcCCCCceEcccCcCCCC-----CCCCCccCHHHH
Confidence 356777654321123456899998889999999999999999988432 246777777665
No 3
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=95.06 E-value=0.015 Score=39.78 Aligned_cols=43 Identities=30% Similarity=0.588 Sum_probs=35.2
Q ss_pred CCccccccCcceeEeccccccccccccccCcccCCCccCCcceeeecCc
Q 023869 55 SPLCDICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGV 103 (276)
Q Consensus 55 ~pLCDvCqs~pA~vfC~~D~A~LC~~CD~~~HsAN~la~rH~RvpL~g~ 103 (276)
...|..|+ ++..+||..|...+|..|..... .+.|..++|..+
T Consensus 8 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~-----H~~H~~~~l~ea 50 (53)
T 2did_A 8 ESLCPQHH-EALSLFCYEDQEAVCLICAISHT-----HRAHTVVPLSGP 50 (53)
T ss_dssp CCBCTTTC-CBCCEEESSSCSEECHHHHTSST-----TTTSCEEECCCT
T ss_pred CCcChhhC-CeeeEEeCCCCeEEeccccCCCC-----CCCCcEeeHHHH
Confidence 45899998 78999999999999999987432 257888888765
No 4
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=95.01 E-value=0.011 Score=41.65 Aligned_cols=44 Identities=18% Similarity=0.388 Sum_probs=35.7
Q ss_pred CCccccccCcceeEeccccccccccccccCcccCCCccCCcceeeecCc
Q 023869 55 SPLCDICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGV 103 (276)
Q Consensus 55 ~pLCDvCqs~pA~vfC~~D~A~LC~~CD~~~HsAN~la~rH~RvpL~g~ 103 (276)
...|+.|...+..+||..|...+|..|...+.| +.|..+||..+
T Consensus 8 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H-----~~H~~~~l~~a 51 (64)
T 2d8u_A 8 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH-----KACEVAPLQSV 51 (64)
T ss_dssp CCCCSSCTTCCCCSEESSSCCCCCSHHHHSSST-----TSSCEECTTTC
T ss_pred CCcCcCcCCCccceEcCcCCceeCccccCCCcC-----CCCCeeCHHHH
Confidence 468999988899999999999999999875322 36777777765
No 5
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=94.58 E-value=0.017 Score=39.03 Aligned_cols=43 Identities=26% Similarity=0.703 Sum_probs=35.1
Q ss_pred CCccccccCcceeEeccccccccccccccCcccCCCccCCcceeeecCc
Q 023869 55 SPLCDICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGV 103 (276)
Q Consensus 55 ~pLCDvCqs~pA~vfC~~D~A~LC~~CD~~~HsAN~la~rH~RvpL~g~ 103 (276)
...|..|...+..+||..|...+|..|....| +.|...+|..+
T Consensus 6 ~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H------~~H~~~~l~ea 48 (50)
T 2yvr_A 6 TVYCNVHKHEPLVLFCESCDTLTCRDCQLNAH------KDHQYQFLEDA 48 (50)
T ss_dssp SCBCSSSTTCBCCEEETTTTEEECHHHHHTTT------TTCCEEETTC-
T ss_pred CCcCcCCCCCCEEEEeCCCCEEEecccCCCcC------CCCceecHHHH
Confidence 36899998889999999999999999987533 47888887765
No 6
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=94.30 E-value=0.019 Score=38.60 Aligned_cols=42 Identities=17% Similarity=0.381 Sum_probs=32.8
Q ss_pred CCccccccCcceeEeccccccccccccccCcccCCCccCCcceeeec
Q 023869 55 SPLCDICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLT 101 (276)
Q Consensus 55 ~pLCDvCqs~pA~vfC~~D~A~LC~~CD~~~HsAN~la~rH~RvpL~ 101 (276)
..+|..|+.++..+||..|...+|..|.... ..+.|..+||.
T Consensus 6 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~-----~H~~H~~~~l~ 47 (48)
T 3ddt_A 6 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFG-----IHKACEVAPLQ 47 (48)
T ss_dssp SCBCSSSTTSBCCEEETTTTEEECHHHHHHS-----TTTTSCEEECC
T ss_pred CCcCCCCCCccccEEcCCCCeeEcccccCCC-----cCCCCcEEeCC
Confidence 4689999888899999999999999997532 12467766664
No 7
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.99 E-value=0.019 Score=43.59 Aligned_cols=44 Identities=23% Similarity=0.466 Sum_probs=37.8
Q ss_pred CCccccccC---cceeEeccccccccccccccCcccCCCccCCccee
Q 023869 55 SPLCDICQE---RRALLFCQEDRAILCRECDIPIHKASEYTKKHNRF 98 (276)
Q Consensus 55 ~pLCDvCqs---~pA~vfC~~D~A~LC~~CD~~~HsAN~la~rH~Rv 98 (276)
...|++|.. .+|..+|..|...+|..|....|..+....+|.++
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~ 49 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 49 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence 368999984 68999999999999999999888877777788765
No 8
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=93.76 E-value=0.032 Score=36.30 Aligned_cols=28 Identities=25% Similarity=0.625 Sum_probs=25.0
Q ss_pred CccccccCcceeEeccccccccccccccC
Q 023869 56 PLCDICQERRALLFCQEDRAILCRECDIP 84 (276)
Q Consensus 56 pLCDvCqs~pA~vfC~~D~A~LC~~CD~~ 84 (276)
.+|..|+ ++..+||..|...+|..|...
T Consensus 4 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~ 31 (42)
T 1fre_A 4 EKCSEHD-ERLKLYCKDDGTLSCVICRDS 31 (42)
T ss_dssp CCCCSSC-SSCCCCCCSSSSSSCCTTSSC
T ss_pred ccchhhC-CeeeEEeCCCCeEEeccCCCC
Confidence 5799997 778999999999999999874
No 9
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.43 E-value=0.025 Score=39.75 Aligned_cols=38 Identities=21% Similarity=0.430 Sum_probs=29.7
Q ss_pred cccCCCCCCCCccccccCcceeEeccccccccccccccC
Q 023869 46 NLVSPSYKESPLCDICQERRALLFCQEDRAILCRECDIP 84 (276)
Q Consensus 46 pL~~p~~k~~pLCDvCqs~pA~vfC~~D~A~LC~~CD~~ 84 (276)
|...+......+|..|+ ++..+||..|...+|..|...
T Consensus 9 ~~~~~~~~~~~~C~~H~-e~L~lfC~~d~~~iC~~C~~~ 46 (57)
T 2egm_A 9 PGRGSRVTDQGICPKHQ-EALKLFCEVDEEAICVVCRES 46 (57)
T ss_dssp CCCCCSCCTTSBCTTTC-CBCCEEETTTTEEECHHHHHS
T ss_pred CCcCccccccCcChhhC-ceeeEEcCCCCcEEecccCCC
Confidence 33333344556899995 789999999999999999874
No 10
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.29 E-value=0.07 Score=37.64 Aligned_cols=43 Identities=30% Similarity=0.617 Sum_probs=34.7
Q ss_pred CCccccccCcceeEeccccccccccccccCcccCCCccCCcceeeecCc
Q 023869 55 SPLCDICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGV 103 (276)
Q Consensus 55 ~pLCDvCqs~pA~vfC~~D~A~LC~~CD~~~HsAN~la~rH~RvpL~g~ 103 (276)
..+|..|+ ++..+||..|...+|..|.... ..+.|..++|..+
T Consensus 14 ~~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~-----eH~~H~~~~l~ea 56 (59)
T 2yrg_A 14 VDHCARHG-EKLLLFCQEDGKVICWLCERSQ-----EHRGHHTFPTSGP 56 (59)
T ss_dssp SSBCTTTC-CBCCEEETTTCSEECHHHHTST-----TTTTCCEEECCSS
T ss_pred CccChhhC-ceeeeecCCCCcEEecccCCCC-----cCCCCcEeeHHHH
Confidence 46899997 5789999999999999998743 2357888888765
No 11
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=92.73 E-value=0.077 Score=39.65 Aligned_cols=44 Identities=27% Similarity=0.583 Sum_probs=37.1
Q ss_pred CccccccCC---CCceEEeccCccccchhhhhccccCccccCCcccc
Q 023869 2 KIWCDVCDK---EEASVFCSADEAALCVACDRRVHHANKLASKHPRF 45 (276)
Q Consensus 2 ~~~Cd~C~~---a~A~vyC~aD~A~LC~~CD~~VHsAN~La~rH~Rv 45 (276)
.+.||+|.. .+|+..|....+.||..|=+..|...+.+.+|.=+
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~ 76 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 76 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence 368999985 68999999999999999988888877777788643
No 12
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=92.65 E-value=0.055 Score=39.20 Aligned_cols=56 Identities=23% Similarity=0.431 Sum_probs=39.9
Q ss_pred cCCcccccccCCCCCCCCccccccCcceeEeccccccccccccccCcccCCCccCCcceeeecCc
Q 023869 39 ASKHPRFNLVSPSYKESPLCDICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGV 103 (276)
Q Consensus 39 a~rH~RvpL~~p~~k~~pLCDvCqs~pA~vfC~~D~A~LC~~CD~~~HsAN~la~rH~RvpL~g~ 103 (276)
+.+|+-+.-. .......|+.|+ ++..+||..|...+|..|....| +.|..++|..+
T Consensus 4 ~~~H~L~~p~--~~~~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H------~~H~~~~l~ea 59 (72)
T 2csv_A 4 GSSGQLLEPI--RDFEARKCPVHG-KTMELFCQTDQTCICYLCMFQEH------KNHSTVTVEEA 59 (72)
T ss_dssp SCCCCCCCCS--SSSSCCBCTTTC-CBCCEEESSSCCEECHHHHHTTT------SSSCEEEHHHH
T ss_pred ccCCcccCCc--cccccCcCcccC-CceEEEeCCCCeEEccccCCCCC------CCCCEecHHHH
Confidence 3456654321 123456899995 88999999999999999987333 47888887665
No 13
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=90.54 E-value=0.091 Score=39.23 Aligned_cols=45 Identities=24% Similarity=0.482 Sum_probs=37.1
Q ss_pred CCCccccccC---cceeEeccccccccccccccCcccCCCccCCccee
Q 023869 54 ESPLCDICQE---RRALLFCQEDRAILCRECDIPIHKASEYTKKHNRF 98 (276)
Q Consensus 54 ~~pLCDvCqs---~pA~vfC~~D~A~LC~~CD~~~HsAN~la~rH~Rv 98 (276)
....|++|.. .+|...|..|.+.+|..|-...|...+..++|..+
T Consensus 29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~ 76 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 76 (78)
T ss_dssp CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred CCccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence 3579999986 67999999999999999988767777777788643
No 14
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=83.85 E-value=2.1 Score=32.44 Aligned_cols=47 Identities=19% Similarity=0.325 Sum_probs=34.9
Q ss_pred CccccccCccee---Eecccccc----ccccccccCcccCCCccCCcceeeecC
Q 023869 56 PLCDICQERRAL---LFCQEDRA----ILCRECDIPIHKASEYTKKHNRFLLTG 102 (276)
Q Consensus 56 pLCDvCqs~pA~---vfC~~D~A----~LC~~CD~~~HsAN~la~rH~RvpL~g 102 (276)
..||.|+..+.. +.|..|.- -||..|-..+.....+...|.-..+..
T Consensus 22 ~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~ 75 (82)
T 2fc7_A 22 FKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYR 75 (82)
T ss_dssp CCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECS
T ss_pred CCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeC
Confidence 489999987654 78999975 699999988765555556776555543
No 15
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=78.16 E-value=1.3 Score=35.59 Aligned_cols=82 Identities=20% Similarity=0.390 Sum_probs=55.0
Q ss_pred CccccccCCCCceEEeccCc-cccchhhh--hccccCccccCCcccccccCCCCCCCCccccccCcceeEecccc-cccc
Q 023869 2 KIWCDVCDKEEASVFCSADE-AALCVACD--RRVHHANKLASKHPRFNLVSPSYKESPLCDICQERRALLFCQED-RAIL 77 (276)
Q Consensus 2 ~~~Cd~C~~a~A~vyC~aD~-A~LC~~CD--~~VHsAN~La~rH~RvpL~~p~~k~~pLCDvCqs~pA~vfC~~D-~A~L 77 (276)
...|..|+.....+|=..+. -.||.+|. .+.|..|....+-.+-. .........|..|+.....++-... ...|
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~KpKKR~--~~~~~~~~~C~~C~t~~tp~WRr~~~g~~l 82 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRL--SAARRAGTSCANCQTTTTTLWRRNANGDPV 82 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSCCCCC--CCCCCTTCCCTTTCCSCCSSCEECTTSCEE
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccccccccc--cccccccccCCCcCCCCcceeEECCCCCCc
Confidence 45799999877666666554 47999999 66777776544333211 1223456799999988776666443 4689
Q ss_pred ccccccCc
Q 023869 78 CRECDIPI 85 (276)
Q Consensus 78 C~~CD~~~ 85 (276)
|..|-+..
T Consensus 83 CNaCgl~~ 90 (115)
T 4hc9_A 83 CNACGLYY 90 (115)
T ss_dssp CHHHHHHH
T ss_pred chHHHHHH
Confidence 99998754
No 16
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=72.55 E-value=3.1 Score=27.98 Aligned_cols=39 Identities=31% Similarity=0.632 Sum_probs=29.6
Q ss_pred ccccccCCCCceEEeccCccccchhhhh-ccccCccccCCccccccc
Q 023869 3 IWCDVCDKEEASVFCSADEAALCVACDR-RVHHANKLASKHPRFNLV 48 (276)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~VHsAN~La~rH~RvpL~ 48 (276)
..|..-+ .+-.+||..|...+|..|.. .-|. .|..+||.
T Consensus 9 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ 48 (53)
T 2did_A 9 SLCPQHH-EALSLFCYEDQEAVCLICAISHTHR------AHTVVPLS 48 (53)
T ss_dssp CBCTTTC-CBCCEEESSSCSEECHHHHTSSTTT------TSCEEECC
T ss_pred CcChhhC-CeeeEEeCCCCeEEeccccCCCCCC------CCcEeeHH
Confidence 4677776 67889999999999999986 4553 56666554
No 17
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=67.98 E-value=4.7 Score=30.05 Aligned_cols=49 Identities=27% Similarity=0.374 Sum_probs=40.3
Q ss_pred CCCCccccccCcceeEecccc-ccccccccccCcccCCCccCCcceeeecCc
Q 023869 53 KESPLCDICQERRALLFCQED-RAILCRECDIPIHKASEYTKKHNRFLLTGV 103 (276)
Q Consensus 53 k~~pLCDvCqs~pA~vfC~~D-~A~LC~~CD~~~HsAN~la~rH~RvpL~g~ 103 (276)
...+.|-+|... |.+.|..| .-..|..|-...|- ....+.|+.+++..-
T Consensus 6 ee~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~-~~d~r~Hk~v~y~~~ 55 (67)
T 2d8v_A 6 SGLPWCCICNED-ATLRCAGCDGDLYCARCFREGHD-NFDLKEHQTSPYHPR 55 (67)
T ss_dssp CCCSSCTTTCSC-CCEEETTTTSEEECSSHHHHHTT-TSSTTTCCEECCCCS
T ss_pred cCCCeeEEeCCC-CeEEecCCCCceehHHHHHHHcc-chhhhccceeeccCC
Confidence 346789999997 99999999 57999999999995 456789998887443
No 18
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=63.55 E-value=2.9 Score=26.68 Aligned_cols=31 Identities=29% Similarity=0.602 Sum_probs=24.2
Q ss_pred ccccccCCCCceEEeccCccccchhhhh-cccc
Q 023869 3 IWCDVCDKEEASVFCSADEAALCVACDR-RVHH 34 (276)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~VHs 34 (276)
..|..-+ .+-.+||..|...+|..|.. .-|.
T Consensus 4 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~ 35 (42)
T 1fre_A 4 EKCSEHD-ERLKLYCKDDGTLSCVICRDSLKHA 35 (42)
T ss_dssp CCCCSSC-SSCCCCCCSSSSSSCCTTSSCSSCT
T ss_pred ccchhhC-CeeeEEeCCCCeEEeccCCCCCCCC
Confidence 3576665 57789999999999999976 4453
No 19
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.15 E-value=6.1 Score=27.45 Aligned_cols=39 Identities=28% Similarity=0.616 Sum_probs=28.7
Q ss_pred ccccccCCCCceEEeccCccccchhhhh-ccccCccccCCccccccc
Q 023869 3 IWCDVCDKEEASVFCSADEAALCVACDR-RVHHANKLASKHPRFNLV 48 (276)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~VHsAN~La~rH~RvpL~ 48 (276)
..|..-+ .+-.+||..|...+|..|.. .-|. .|..+||.
T Consensus 15 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH~------~H~~~~l~ 54 (59)
T 2yrg_A 15 DHCARHG-EKLLLFCQEDGKVICWLCERSQEHR------GHHTFPTS 54 (59)
T ss_dssp SBCTTTC-CBCCEEETTTCSEECHHHHTSTTTT------TCCEEECC
T ss_pred ccChhhC-ceeeeecCCCCcEEecccCCCCcCC------CCcEeeHH
Confidence 3576665 46789999999999999986 4553 45555553
No 20
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=61.28 E-value=7.3 Score=25.68 Aligned_cols=40 Identities=25% Similarity=0.596 Sum_probs=30.0
Q ss_pred ccccccCCCCceEEeccCccccchhhhhccccCccccCCccccccc
Q 023869 3 IWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLV 48 (276)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~VHsAN~La~rH~RvpL~ 48 (276)
..|..-...+-.+||..|...+|..|-..-|. .|.-++|.
T Consensus 7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~------~H~~~~l~ 46 (50)
T 2yvr_A 7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK------DHQYQFLE 46 (50)
T ss_dssp CBCSSSTTCBCCEEETTTTEEECHHHHHTTTT------TCCEEETT
T ss_pred CcCcCCCCCCEEEEeCCCCEEEecccCCCcCC------CCceecHH
Confidence 45777755678899999999999999875553 56666553
No 21
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=55.27 E-value=7.9 Score=25.42 Aligned_cols=31 Identities=23% Similarity=0.655 Sum_probs=23.3
Q ss_pred cccccCCCCceEEeccCccccchhhh-hcccc
Q 023869 4 WCDVCDKEEASVFCSADEAALCVACD-RRVHH 34 (276)
Q Consensus 4 ~Cd~C~~a~A~vyC~aD~A~LC~~CD-~~VHs 34 (276)
.|..-...+-.+||..|...+|..|- ..-|.
T Consensus 8 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~ 39 (48)
T 3ddt_A 8 MCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK 39 (48)
T ss_dssp BCSSSTTSBCCEEETTTTEEECHHHHHHSTTT
T ss_pred cCCCCCCccccEEcCCCCeeEcccccCCCcCC
Confidence 45554445678999999999999996 44565
No 22
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=53.83 E-value=8 Score=26.62 Aligned_cols=41 Identities=22% Similarity=0.463 Sum_probs=30.3
Q ss_pred ccccccCCCCceEEeccCccccchhhhh-ccccCccccCCcccccccC
Q 023869 3 IWCDVCDKEEASVFCSADEAALCVACDR-RVHHANKLASKHPRFNLVS 49 (276)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~VHsAN~La~rH~RvpL~~ 49 (276)
..|..-...+-.+||..|...+|..|.. .-|. .|.-+||..
T Consensus 9 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~~ 50 (64)
T 2d8u_A 9 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQS 50 (64)
T ss_dssp CCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTT
T ss_pred CcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHHH
Confidence 3577775567889999999999999975 4564 466666543
No 23
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.58 E-value=6.5 Score=27.16 Aligned_cols=31 Identities=39% Similarity=0.816 Sum_probs=24.7
Q ss_pred ccccccCCCCceEEeccCccccchhhhh-cccc
Q 023869 3 IWCDVCDKEEASVFCSADEAALCVACDR-RVHH 34 (276)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~VHs 34 (276)
..|..-+ ..-.+||..|.+.+|..|.. .-|.
T Consensus 19 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH~ 50 (57)
T 2egm_A 19 GICPKHQ-EALKLFCEVDEEAICVVCRESRSHK 50 (57)
T ss_dssp SBCTTTC-CBCCEEETTTTEEECHHHHHSHHHH
T ss_pred CcChhhC-ceeeEEcCCCCcEEecccCCCCCCC
Confidence 3577774 67889999999999999986 4554
No 24
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=51.98 E-value=11 Score=27.33 Aligned_cols=39 Identities=23% Similarity=0.554 Sum_probs=29.0
Q ss_pred cccccCCCCceEEeccCccccchhhhh-ccccCccccCCccccccc
Q 023869 4 WCDVCDKEEASVFCSADEAALCVACDR-RVHHANKLASKHPRFNLV 48 (276)
Q Consensus 4 ~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~VHsAN~La~rH~RvpL~ 48 (276)
.|..-...+-.+||..|...+|..|-. .-|. .|.-++|.
T Consensus 20 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ 59 (84)
T 2dja_A 20 TCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLN 59 (84)
T ss_dssp CCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCC
T ss_pred cCcCcCCccccEEcCCCCceEcccCcCCCCCC------CCCccCHH
Confidence 566665567899999999999999986 5553 45555553
No 25
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.38 E-value=8.8 Score=27.52 Aligned_cols=43 Identities=21% Similarity=0.395 Sum_probs=31.5
Q ss_pred CccccccCcc---eeEeccccc-cccccccccCcccCCCccCCccee
Q 023869 56 PLCDICQERR---ALLFCQEDR-AILCRECDIPIHKASEYTKKHNRF 98 (276)
Q Consensus 56 pLCDvCqs~p---A~vfC~~D~-A~LC~~CD~~~HsAN~la~rH~Rv 98 (276)
..||.|+..+ ..+.|..|. --||..|-..+...+.+...|.-+
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~ 58 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMK 58 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEE
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEE
Confidence 4899999775 347888885 569999988876665555566443
No 26
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=46.73 E-value=19 Score=26.75 Aligned_cols=47 Identities=23% Similarity=0.516 Sum_probs=38.0
Q ss_pred ccccccCCCCceEEeccC-ccccchhhhhccccCccccCCcccccccCCC
Q 023869 3 IWCDVCDKEEASVFCSAD-EAALCVACDRRVHHANKLASKHPRFNLVSPS 51 (276)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD-~A~LC~~CD~~VHsAN~La~rH~RvpL~~p~ 51 (276)
+.|-+|..- |++-|... .-.+|.+|=+..|. ..=.+.|+.+++..|.
T Consensus 9 pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~-~~d~r~Hk~v~y~~~~ 56 (67)
T 2d8v_A 9 PWCCICNED-ATLRCAGCDGDLYCARCFREGHD-NFDLKEHQTSPYHPRR 56 (67)
T ss_dssp SSCTTTCSC-CCEEETTTTSEEECSSHHHHHTT-TSSTTTCCEECCCCSS
T ss_pred CeeEEeCCC-CeEEecCCCCceehHHHHHHHcc-chhhhccceeeccCCC
Confidence 579999965 99999866 67899999999995 4556789988876544
No 27
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=44.90 E-value=7.5 Score=27.99 Aligned_cols=32 Identities=31% Similarity=0.711 Sum_probs=25.4
Q ss_pred cccccCCCCc---eEEeccCccccchhhhhccccC
Q 023869 4 WCDVCDKEEA---SVFCSADEAALCVACDRRVHHA 35 (276)
Q Consensus 4 ~Cd~C~~a~A---~vyC~aD~A~LC~~CD~~VHsA 35 (276)
.|-.|+..-. ++-|......+|.+||.-||..
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhh
Confidence 4777776532 4559999999999999999964
No 28
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=41.38 E-value=21 Score=26.52 Aligned_cols=38 Identities=24% Similarity=0.394 Sum_probs=20.2
Q ss_pred CccccchhhhhccccCccccCCcccccccCCCCCCCCccccccC
Q 023869 20 DEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDICQE 63 (276)
Q Consensus 20 D~A~LC~~CD~~VHsAN~La~rH~RvpL~~p~~k~~pLCDvCqs 63 (276)
+...+|..||+..|.. -+ ..||........++|..|..
T Consensus 39 ~~ll~CD~C~~~yH~~-----Cl-~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 39 DKQLMCDECDMAFHIY-----CL-DPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp GGEEECTTTCCEEETT-----TS-SSCCSSCCSSSCCCCTTTC-
T ss_pred cceeEeCCCCCccCcc-----cC-CCcccCCCCCCceECcCccc
Confidence 4567788888888863 11 12333222222377777653
No 29
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=39.06 E-value=20 Score=25.36 Aligned_cols=31 Identities=26% Similarity=0.643 Sum_probs=24.7
Q ss_pred ccccccCCCCceEEeccCccccchhhhhcccc
Q 023869 3 IWCDVCDKEEASVFCSADEAALCVACDRRVHH 34 (276)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~VHs 34 (276)
..|..-+ .+-.+||..|...+|..|-..-|.
T Consensus 19 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H~ 49 (72)
T 2csv_A 19 RKCPVHG-KTMELFCQTDQTCICYLCMFQEHK 49 (72)
T ss_dssp CBCTTTC-CBCCEEESSSCCEECHHHHHTTTS
T ss_pred CcCcccC-CceEEEeCCCCeEEccccCCCCCC
Confidence 3577764 678899999999999999765554
No 30
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=38.72 E-value=15 Score=26.51 Aligned_cols=47 Identities=21% Similarity=0.383 Sum_probs=29.3
Q ss_pred ccccccCCCCceEEeccCccccchhhhhccccCccccCCcccccccCCCCCCCCccccccCc
Q 023869 3 IWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDICQER 64 (276)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~VHsAN~La~rH~RvpL~~p~~k~~pLCDvCqs~ 64 (276)
..|.+|++. +...+|..|++..|.. -| +.+|.. .+...++|..|...
T Consensus 13 ~~C~vC~~~--------~~ll~Cd~C~~~~H~~-----Cl-~P~l~~-~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 13 ARCGVCGDG--------TDVLRCTHCAAAFHWR-----CH-FPAGTS-RPGTGLRCRSCSGD 59 (66)
T ss_dssp CCCTTTSCC--------TTCEECSSSCCEECHH-----HH-CTTTCC-CCSSSCCCTTTTTC
T ss_pred CCcCCCCCC--------CeEEECCCCCCceecc-----cC-CCccCc-CCCCCEECccccCC
Confidence 368999853 4577888999888863 11 223322 12345888888653
No 31
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=37.02 E-value=8 Score=27.82 Aligned_cols=32 Identities=25% Similarity=0.731 Sum_probs=24.0
Q ss_pred ccccccCcce---eEeccccccccccccccCcccC
Q 023869 57 LCDICQERRA---LLFCQEDRAILCRECDIPIHKA 88 (276)
Q Consensus 57 LCDvCqs~pA---~vfC~~D~A~LC~~CD~~~HsA 88 (276)
.|-.|+..-. .+.|..|...+|.+||+-+|..
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhh
Confidence 4666665432 4679999999999999998854
No 32
>3jst_A Putative pterin-4-alpha-carbinolamine dehydratase; lyase, structural genomics, seattle structural genomics CENT infectious disease, ssgcid; 2.10A {Brucella melitensis} SCOP: d.74.1.0
Probab=36.84 E-value=12 Score=28.78 Aligned_cols=17 Identities=41% Similarity=0.743 Sum_probs=13.8
Q ss_pred cchhHHhhhcCCCccccc
Q 023869 169 SSISEYLMETLPGWRVDD 186 (276)
Q Consensus 169 ssiseyl~~~~pgw~v~d 186 (276)
.-|.++| +.||||+++|
T Consensus 9 ~ei~~~L-~~l~gW~~~~ 25 (97)
T 3jst_A 9 SEMNEAL-RALDGWQKVD 25 (97)
T ss_dssp HHHHHHH-HTSTTCEECT
T ss_pred HHHHHHh-hcCCCCeEeC
Confidence 4588898 5789999975
No 33
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=36.46 E-value=16 Score=36.15 Aligned_cols=74 Identities=18% Similarity=0.438 Sum_probs=21.1
Q ss_pred cccccCCCCceEEeccCccccchhhhhccccCccccCCccccccc----------------C----CCCCCCCccccccC
Q 023869 4 WCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLV----------------S----PSYKESPLCDICQE 63 (276)
Q Consensus 4 ~Cd~C~~a~A~vyC~aD~A~LC~~CD~~VHsAN~La~rH~RvpL~----------------~----p~~k~~pLCDvCqs 63 (276)
.|+.|+.- +|=..-.+.-|..|...+|.. .|..++.. | ........|+.|+.
T Consensus 50 ~C~~C~~~---i~g~~~qg~~C~~C~~~~H~~-----C~~~v~~~c~~~~~~~~~~~~~~~h~~~~~~~~~~~~C~~C~~ 121 (674)
T 3pfq_A 50 FCSHCTDF---IWGFGKQGFQCQVCSFVVHKR-----CHEFVTFSCPGADKGPASDDPRSKHKFKIHTYSSPTFCDHCGS 121 (674)
T ss_dssp ------------------------------------------------------------CCCCCEECCSSCCCCSSSCS
T ss_pred cccccccc---ccccCCceeECCCCCCCcChh-----hcCcCcccCCCcccccccccccCCcceeecCCCCCCCCCcccc
Confidence 68888863 222244567777788777762 22222210 0 01134579999977
Q ss_pred cc-----eeEeccccccccccccccCc
Q 023869 64 RR-----ALLFCQEDRAILCRECDIPI 85 (276)
Q Consensus 64 ~p-----A~vfC~~D~A~LC~~CD~~~ 85 (276)
.- -.+.|..|...+-..|...+
T Consensus 122 ~l~g~~~qg~~C~~C~~~~H~~C~~~v 148 (674)
T 3pfq_A 122 LLYGLIHQGMKCDTCMMNVHKRCVMNV 148 (674)
T ss_dssp CCBBSSSCEECCSSSCCCBCSSTTSSS
T ss_pred ccchhhcCccccccCCcchhhhhhhcc
Confidence 52 35667776666655555443
No 34
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=35.78 E-value=34 Score=23.89 Aligned_cols=48 Identities=23% Similarity=0.354 Sum_probs=29.7
Q ss_pred ccccccCCCCceEEeccCccccchhhhhccccCccccCCcccccccCCCCCCCCccccccCcc
Q 023869 3 IWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDICQERR 65 (276)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~VHsAN~La~rH~RvpL~~p~~k~~pLCDvCqs~p 65 (276)
..|.+|+. .+.-.+|..|++..|.. -+. .||... +...+.|..|..++
T Consensus 10 ~~C~vC~~--------~g~ll~Cd~C~~~fH~~-----Cl~-ppl~~~-p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 10 EFCRVCKD--------GGELLCCDTCPSSYHIH-----CLN-PPLPEI-PNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCTTTCC--------CSSCBCCSSSCCCBCSS-----SSS-SCCSSC-CSSCCCCTTTTTTC
T ss_pred CcCCCCCC--------CCCEEEcCCCCHHHccc-----ccC-CCcCcC-CCCccCChhhcCch
Confidence 46888885 35678899999998864 111 122211 23457888876653
No 35
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=35.71 E-value=23 Score=27.07 Aligned_cols=57 Identities=21% Similarity=0.494 Sum_probs=32.3
Q ss_pred CCccccccCCCCceEEeccCccccchhhhhccccCccccCCcccccccCCCCCCCCccccccCcceeEeccccc--cccc
Q 023869 1 MKIWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDICQERRALLFCQEDR--AILC 78 (276)
Q Consensus 1 M~~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~VHsAN~La~rH~RvpL~~p~~k~~pLCDvCqs~pA~vfC~~D~--A~LC 78 (276)
|...|-.|+..... ...-..|..|+..+-- ...|+.|+..-.. |..|. ..+|
T Consensus 1 M~~~CP~C~~~l~~----~~~~~~C~~C~~~~~~--------------------~afCPeCgq~Le~--lkACGA~~yFC 54 (81)
T 2jrp_A 1 MEITCPVCHHALER----NGDTAHCETCAKDFSL--------------------QALCPDCRQPLQV--LKACGAVDYFC 54 (81)
T ss_dssp CCCCCSSSCSCCEE----CSSEEECTTTCCEEEE--------------------EEECSSSCSCCCE--EEETTEEEECC
T ss_pred CCCCCCCCCCcccc----CCCceECccccccCCC--------------------cccCcchhhHHHH--HHhcCCcCeee
Confidence 77888899865442 2334457777653211 1366667665444 44443 3566
Q ss_pred ccccc
Q 023869 79 RECDI 83 (276)
Q Consensus 79 ~~CD~ 83 (276)
..|.-
T Consensus 55 ~~C~~ 59 (81)
T 2jrp_A 55 QNGHG 59 (81)
T ss_dssp TTTTC
T ss_pred ccCCC
Confidence 66643
No 36
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.94 E-value=19 Score=25.51 Aligned_cols=64 Identities=17% Similarity=0.476 Sum_probs=34.5
Q ss_pred eEEeccC----ccccchhhhhccccCccccCCcccccccCCCCCCCCccccccCcce--eEeccccccccccccccC
Q 023869 14 SVFCSAD----EAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDICQERRA--LLFCQEDRAILCRECDIP 84 (276)
Q Consensus 14 ~vyC~aD----~A~LC~~CD~~VHsAN~La~rH~RvpL~~p~~k~~pLCDvCqs~pA--~vfC~~D~A~LC~~CD~~ 84 (276)
.+||..| -+..|..|+..|.. ..+...-..+ |+ .=-.|..|+..-. ..|-.....++|..|...
T Consensus 3 ~~yC~~dy~~~~~~~C~~C~~~I~~-~~v~a~~~~w---H~---~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~ 72 (81)
T 1v6g_A 3 SGSSGLDYQRLYGTRCFSCDQFIEG-EVVSALGKTY---HP---DCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLP 72 (81)
T ss_dssp CCCCCSCGGGSCCCBCTTTCCBCCS-CCEEETTEEE---CT---TTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSC
T ss_pred CCcchHHHHhHhCCcCccccCEecc-ceEEECCcee---Cc---cCCccccCCCCCCCCCEEEeCCCCEEChhhhcc
Confidence 4678777 25689999998873 3222211111 11 1246777766532 333334444577777544
No 37
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=31.85 E-value=12 Score=27.84 Aligned_cols=31 Identities=29% Similarity=0.723 Sum_probs=26.2
Q ss_pred CCccccccCCCCceEEeccCccccchhhhhcc
Q 023869 1 MKIWCDVCDKEEASVFCSADEAALCVACDRRV 32 (276)
Q Consensus 1 M~~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~V 32 (276)
|++.|.-|. +.-+||=.+-...+|..|...+
T Consensus 6 m~VKCp~C~-niq~VFShA~tvV~C~~Cg~~L 36 (66)
T 1qxf_A 6 VKVKCPDCE-HEQVIFDHPSTIVKCIICGRTV 36 (66)
T ss_dssp EEEECTTTC-CEEEEESSCSSCEECSSSCCEE
T ss_pred EEEECCCCC-CceEEEecCceEEEcccCCCEE
Confidence 788999999 5788999999999999997544
No 38
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=31.55 E-value=33 Score=28.51 Aligned_cols=47 Identities=26% Similarity=0.593 Sum_probs=27.8
Q ss_pred ccccccCCCCceEEeccCccccchhhhhccccCccccCCcccccccCCCCCCCCccccccCc
Q 023869 3 IWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDICQER 64 (276)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~VHsAN~La~rH~RvpL~~p~~k~~pLCDvCqs~ 64 (276)
..|.+|+.. ++..+|..|++..|.. .|. .+|.. .+...+.|..|...
T Consensus 5 ~~C~~C~~~--------g~ll~Cd~C~~~~H~~-----C~~-p~l~~-~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 5 DWCAVCQNG--------GELLCCEKCPKVFHLS-----CHV-PTLTN-FPSGEWICTFCRDL 51 (184)
T ss_dssp SSCTTTCCC--------SSCEECSSSSCEECTT-----TSS-SCCSS-CCSSCCCCTTTSCS
T ss_pred CccccCCCC--------CeeeecCCCCcccCcc-----ccC-CCCCC-CCCCCEECccccCc
Confidence 368899854 4567788899888853 221 12221 12345777776653
No 39
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=31.08 E-value=47 Score=26.18 Aligned_cols=65 Identities=23% Similarity=0.437 Sum_probs=39.9
Q ss_pred ccccccCCCCceEEeccCccccch--hhhhccccCccccCCcccccccCCCCCCCCcccccc----CcceeEeccccccc
Q 023869 3 IWCDVCDKEEASVFCSADEAALCV--ACDRRVHHANKLASKHPRFNLVSPSYKESPLCDICQ----ERRALLFCQEDRAI 76 (276)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~--~CD~~VHsAN~La~rH~RvpL~~p~~k~~pLCDvCq----s~pA~vfC~~D~A~ 76 (276)
..|.+|+. ..+..+|. .|++-.|.. =| . |.+. ++..++|..|. .+++.++|..|-..
T Consensus 16 ~~C~~C~~--------~G~ll~CD~~~Cp~~fH~~-Cl-~------L~~~-P~g~W~Cp~c~C~~C~k~~~~~C~~Cp~s 78 (107)
T 4gne_A 16 DYCFQCGD--------GGELVMCDKKDCPKAYHLL-CL-N------LTQP-PYGKWECPWHQCDECSSAAVSFCEFCPHS 78 (107)
T ss_dssp SSCTTTCC--------CSEEEECCSTTCCCEECTG-GG-T------CSSC-CSSCCCCGGGBCTTTCSBCCEECSSSSCE
T ss_pred CCCCcCCC--------CCcEeEECCCCCCcccccc-cC-c------CCcC-CCCCEECCCCCCCcCCCCCCcCcCCCCcc
Confidence 35777874 24566777 799877753 22 1 2221 23356666442 33456889999888
Q ss_pred cccccccC
Q 023869 77 LCRECDIP 84 (276)
Q Consensus 77 LC~~CD~~ 84 (276)
+|.+|...
T Consensus 79 fC~~c~~g 86 (107)
T 4gne_A 79 FCKDHEKG 86 (107)
T ss_dssp ECTTTCTT
T ss_pred hhhhccCC
Confidence 88887543
No 40
>2v6u_A Pterin-4A-carbinolamine dehydratase; lyase, enzyme; 1.6A {Toxoplasma gondii} PDB: 2v6s_A 2v6t_A*
Probab=30.89 E-value=17 Score=28.26 Aligned_cols=18 Identities=22% Similarity=0.673 Sum_probs=14.4
Q ss_pred CcchhHHhhhcCCCccccc
Q 023869 168 TSSISEYLMETLPGWRVDD 186 (276)
Q Consensus 168 ~ssiseyl~~~~pgw~v~d 186 (276)
..-|.++| +.||||+++|
T Consensus 11 ~~ei~~~L-~~l~gW~~~~ 28 (104)
T 2v6u_A 11 SARLLQLH-KTVPQWHLTD 28 (104)
T ss_dssp CHHHHHHH-TTSTTSEECG
T ss_pred HHHHHHHh-hcCCCCeEeC
Confidence 35688999 5789999876
No 41
>2ebb_A Pterin-4-alpha-carbinolamine dehydratase; coenzyme biosyntheses, GK1984, structural genomics, NPPSFA; 1.60A {Geobacillus kaustophilus}
Probab=30.70 E-value=17 Score=28.19 Aligned_cols=17 Identities=29% Similarity=0.769 Sum_probs=13.3
Q ss_pred cchhHHhhhcCCCccccc
Q 023869 169 SSISEYLMETLPGWRVDD 186 (276)
Q Consensus 169 ssiseyl~~~~pgw~v~d 186 (276)
.-|.++| +.||||+++|
T Consensus 6 ~ei~~~L-~~l~gW~~~~ 22 (101)
T 2ebb_A 6 EEVQALL-EKADGWKLAD 22 (101)
T ss_dssp HHHHHHH-HTSTTCEEET
T ss_pred HHHHHHh-hcCCCCeECC
Confidence 3477888 5889999875
No 42
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=30.64 E-value=40 Score=25.73 Aligned_cols=68 Identities=25% Similarity=0.586 Sum_probs=37.3
Q ss_pred ccccccCCCCceEEeccCccccchhhhhccccCccccCCcccccccCCCCCCCCccccccCcceeEecccc-------cc
Q 023869 3 IWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDICQERRALLFCQED-------RA 75 (276)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~VHsAN~La~rH~RvpL~~p~~k~~pLCDvCqs~pA~vfC~~D-------~A 75 (276)
..|.+|++.--. +.-.+|..|.+..|..= | .- ++ .+.....+.|..|. +|..| ..
T Consensus 8 ~~C~~C~~~g~~-----~~ll~C~~C~~~~H~~C-l-~~----~~-~~~~~~~W~C~~C~------~C~~C~~~~~~~~l 69 (111)
T 2ysm_A 8 ANCAVCDSPGDL-----LDQFFCTTCGQHYHGMC-L-DI----AV-TPLKRAGWQCPECK------VCQNCKQSGEDSKM 69 (111)
T ss_dssp SCBTTTCCCCCT-----TTSEECSSSCCEECTTT-T-TC----CC-CTTTSTTCCCTTTC------CCTTTCCCSCCTTE
T ss_pred CCCcCCCCCCCC-----cCCeECCCCCCCcChHH-h-CC----cc-ccccccCccCCcCC------cccccCccCCCCCe
Confidence 468888864211 22367889998888641 1 10 00 11122356666554 23222 37
Q ss_pred ccccccccCcccC
Q 023869 76 ILCRECDIPIHKA 88 (276)
Q Consensus 76 ~LC~~CD~~~HsA 88 (276)
.+|..|+...|..
T Consensus 70 l~Cd~C~~~yH~~ 82 (111)
T 2ysm_A 70 LVCDTCDKGYHTF 82 (111)
T ss_dssp EECSSSCCEEEGG
T ss_pred eECCCCCcHHhHH
Confidence 8888888776643
No 43
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=29.86 E-value=17 Score=27.99 Aligned_cols=31 Identities=26% Similarity=0.590 Sum_probs=25.9
Q ss_pred CCccccccCCCCceEEeccCccccchhhhhcc
Q 023869 1 MKIWCDVCDKEEASVFCSADEAALCVACDRRV 32 (276)
Q Consensus 1 M~~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~V 32 (276)
|++.|..|+ +.-+||=++-...+|..|...+
T Consensus 33 m~VkCp~C~-~~q~VFSha~t~V~C~~Cg~~L 63 (82)
T 3u5c_b 33 LDVKCPGCL-NITTVFSHAQTAVTCESCSTIL 63 (82)
T ss_dssp EEEECTTSC-SCEEEESBCSSCCCCSSSCCCC
T ss_pred EEEECCCCC-CeeEEEecCCeEEEccccCCEE
Confidence 778999999 5788999999999999996443
No 44
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=29.22 E-value=34 Score=22.61 Aligned_cols=49 Identities=31% Similarity=0.539 Sum_probs=29.5
Q ss_pred cccccCCCCceEEeccCccccchhhhhccccCccccCCcccccccCCCCCCCCccccccCc
Q 023869 4 WCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDICQER 64 (276)
Q Consensus 4 ~Cd~C~~a~A~vyC~aD~A~LC~~CD~~VHsAN~La~rH~RvpL~~p~~k~~pLCDvCqs~ 64 (276)
.|.+|++.. ..+.-.+|..|++..|.. =| ..+|... ++..+.|..|..+
T Consensus 2 ~C~vC~~~~-----~~~~ll~Cd~C~~~~H~~-Cl-----~p~l~~~-P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKG-----EDDKLILCDECNKAFHLF-CL-----RPALYEV-PDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSS-----CCSCCEECTTTCCEECHH-HH-----CTTCCSC-CSSCCSCTTTSCC
T ss_pred CCCCCCCCC-----CCCCEEECCCCChhhCcc-cC-----CCCcCCC-CCCcEECcCcccc
Confidence 588888653 245678899999988863 11 0122211 2345788887653
No 45
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.64 E-value=15 Score=27.05 Aligned_cols=31 Identities=23% Similarity=0.611 Sum_probs=25.6
Q ss_pred CCccccccCCCCceEEeccCccccchhhhhcc
Q 023869 1 MKIWCDVCDKEEASVFCSADEAALCVACDRRV 32 (276)
Q Consensus 1 M~~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~V 32 (276)
|++.|.-|. +.-+||=++-...+|..|...+
T Consensus 14 m~VkCp~C~-~~q~VFSha~t~V~C~~Cgt~L 44 (63)
T 3j20_W 14 LRVKCIDCG-NEQIVFSHPATKVRCLICGATL 44 (63)
T ss_dssp EEEECSSSC-CEEEEESSCSSCEECSSSCCEE
T ss_pred EEEECCCCC-CeeEEEecCCeEEEccCcCCEE
Confidence 788999999 4778898999999999997544
No 46
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=27.73 E-value=15 Score=28.30 Aligned_cols=30 Identities=23% Similarity=0.650 Sum_probs=25.0
Q ss_pred CCccccccCCCCceEEeccCccccchhhhhc
Q 023869 1 MKIWCDVCDKEEASVFCSADEAALCVACDRR 31 (276)
Q Consensus 1 M~~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~ 31 (276)
|++.|.-|+ +.-+||=++-...+|..|...
T Consensus 31 m~VkCp~C~-n~q~VFShA~t~V~C~~Cg~~ 60 (81)
T 2xzm_6 31 MDVKCAQCQ-NIQMIFSNAQSTIICEKCSAI 60 (81)
T ss_dssp EEEECSSSC-CEEEEETTCSSCEECSSSCCE
T ss_pred EEeECCCCC-CeeEEEecCccEEEccCCCCE
Confidence 788999999 578888888888888888644
No 47
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=26.93 E-value=16 Score=28.30 Aligned_cols=31 Identities=23% Similarity=0.616 Sum_probs=25.4
Q ss_pred CCccccccCCCCceEEeccCccccchhhhhcc
Q 023869 1 MKIWCDVCDKEEASVFCSADEAALCVACDRRV 32 (276)
Q Consensus 1 M~~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~V 32 (276)
|++.|.-|. +.-+||=++-...+|..|...+
T Consensus 35 m~VkCp~C~-~~~~VFShA~t~V~C~~CgtvL 65 (86)
T 3iz6_X 35 MDVKCQGCF-NITTVFSHSQTVVVCPGCQTVL 65 (86)
T ss_dssp EEEECTTTC-CEEEEETTCSSCCCCSSSCCCC
T ss_pred eEEECCCCC-CeeEEEecCCcEEEccCCCCEe
Confidence 678899998 5788898999999999996443
No 48
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=26.00 E-value=56 Score=23.52 Aligned_cols=17 Identities=29% Similarity=0.624 Sum_probs=12.6
Q ss_pred cCccccchhhhhccccC
Q 023869 19 ADEAALCVACDRRVHHA 35 (276)
Q Consensus 19 aD~A~LC~~CD~~VHsA 35 (276)
.+...+|..|++..|..
T Consensus 30 ~~~ll~CD~C~~~yH~~ 46 (70)
T 3asl_A 30 PDKQLMCDECDMAFHIY 46 (70)
T ss_dssp GGGEEECTTTCCEEEGG
T ss_pred CCCEEEcCCCCCceecc
Confidence 34567888999888863
No 49
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=25.48 E-value=35 Score=32.72 Aligned_cols=72 Identities=22% Similarity=0.392 Sum_probs=47.0
Q ss_pred CccccccCCCCceEEeccC-ccccchhhhhccccCccccCCcccccccCCCCCCCCccccccCcceeEecc--ccccccc
Q 023869 2 KIWCDVCDKEEASVFCSAD-EAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDICQERRALLFCQ--EDRAILC 78 (276)
Q Consensus 2 ~~~Cd~C~~a~A~vyC~aD-~A~LC~~CD~~VHsAN~La~rH~RvpL~~p~~k~~pLCDvCqs~pA~vfC~--~D~A~LC 78 (276)
+..|-.|++. ..++.+-- ...+|..|-...+..+.... ... ..-.|..|....-.+-|. .|....|
T Consensus 50 e~~C~~CG~~-~~~~~HPl~~v~lC~~Ck~~y~~~~f~~D---------~DG-~~~yCr~C~~Gg~l~~Cdn~~C~r~FC 118 (386)
T 2pv0_B 50 EDICICCGSL-QVHTQHPLFEGGICAPCKDKFLDALFLYD---------DDG-YQSYCSICCSGETLLICGNPDCTRCYC 118 (386)
T ss_dssp GGSBTTTCCS-CCCSBCSSBSSBCCHHHHHHHHTTTTCBC---------SSS-SBCSCTTTCCCSSCEECCSTTCCCEEC
T ss_pred cceeCCCCCc-CccccCCCcCcchhhHHHHHHhccCcccC---------CCC-CcccceEcCCCCeEEEeCCCCCCcchH
Confidence 4578888865 33333322 57788888777776543211 011 124888999888888888 8888899
Q ss_pred cccccC
Q 023869 79 RECDIP 84 (276)
Q Consensus 79 ~~CD~~ 84 (276)
..|...
T Consensus 119 ~~Ci~~ 124 (386)
T 2pv0_B 119 FECVDS 124 (386)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999754
No 50
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.97 E-value=60 Score=23.92 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=11.9
Q ss_pred cCccccchhhhhccccC
Q 023869 19 ADEAALCVACDRRVHHA 35 (276)
Q Consensus 19 aD~A~LC~~CD~~VHsA 35 (276)
.+.-.+|..|++..|..
T Consensus 38 ~~~ll~CD~C~~~yH~~ 54 (77)
T 2e6s_A 38 PNMQLLCDECNVAYHIY 54 (77)
T ss_dssp STTEEECSSSCCEEETT
T ss_pred CCCEEEcCCCCcccccc
Confidence 34567788888887763
No 51
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.66 E-value=30 Score=24.64 Aligned_cols=27 Identities=30% Similarity=0.572 Sum_probs=23.4
Q ss_pred CccccccCcceeEeccccccccc-ccccc
Q 023869 56 PLCDICQERRALLFCQEDRAILC-RECDI 83 (276)
Q Consensus 56 pLCDvCqs~pA~vfC~~D~A~LC-~~CD~ 83 (276)
.+|.+|+. ++.+.|..|.+..| ..|-.
T Consensus 13 ~~C~vC~~-~~kY~CPrC~~~yCSl~C~k 40 (56)
T 2yqq_A 13 VVCVICLE-KPKYRCPACRVPYCSVVCFR 40 (56)
T ss_dssp CCCTTTCS-CCSEECTTTCCEESSHHHHH
T ss_pred CccCcCcC-CCeeeCCCCCCCeeCHHHHH
Confidence 48999999 99999999999998 56644
No 52
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=23.53 E-value=22 Score=36.54 Aligned_cols=109 Identities=19% Similarity=0.340 Sum_probs=65.5
Q ss_pred CccccccCCC--CceEEeccCccccchhhhhc--cccCccccC-CcccccccCCCC--CCCCccccccCcceeE--e--c
Q 023869 2 KIWCDVCDKE--EASVFCSADEAALCVACDRR--VHHANKLAS-KHPRFNLVSPSY--KESPLCDICQERRALL--F--C 70 (276)
Q Consensus 2 ~~~Cd~C~~a--~A~vyC~aD~A~LC~~CD~~--VHsAN~La~-rH~RvpL~~p~~--k~~pLCDvCqs~pA~v--f--C 70 (276)
++.|.+|+-. ..+|.|..+.-.+|..=+.. -|--|-|.+ ||.-|.|+.-++ ....-|-.|+.+...+ | .
T Consensus 11 ~~~c~yc~~~~~~~~~~c~~~~~wfcn~~~~~~~shi~~hl~~~~~~~~~l~~~~~~~~~~~~c~~c~~~n~f~lg~~~~ 90 (802)
T 2xzl_A 11 DNSCAYCGIDSAKCVIKCNSCKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVLECYNCGRKNVFLLGFVSA 90 (802)
T ss_dssp -CCCTTTCCCCTTTEEEETTTCCEEECCCSSSSSCHHHHHHHHHTCCCEEECTTSSSCSCBCCCSSSCCCCTTTEEEEC-
T ss_pred hhhCcccCCCCCceEEEeCCCCcEecCCCCCCCccHHHHHHHHccCCeeeccCCCCCCCceeEeecCCCCceeeeeeeec
Confidence 3579999976 88999999999999954422 344444444 888888843332 4467899999988755 2 2
Q ss_pred cccc--cccccc-cccCcccCCCccCCcceeeecCccccCCcccc
Q 023869 71 QEDR--AILCRE-CDIPIHKASEYTKKHNRFLLTGVKLTASASVT 112 (276)
Q Consensus 71 ~~D~--A~LC~~-CD~~~HsAN~la~rH~RvpL~g~~~s~~~~~~ 112 (276)
..+. +.||+. |-... ..|- ...+=--.|++-+.-+|-+..
T Consensus 91 ~~~~~~~~~cr~~c~~~~-~~~~-~~~~~~~~i~~~~~~~~~~~~ 133 (802)
T 2xzl_A 91 KSEAVVVLLCRIPCAQTK-NANW-DTDQWQPLIEDRQLLSWVAEQ 133 (802)
T ss_dssp -----CEEEETTTTTTCC----C-CGGGCEESBCSSSBCTTTSCC
T ss_pred cCCceEEEEeCCcccchh-hcCC-cHhhCceeecccccchhhccC
Confidence 3344 577874 85431 1111 112223346666666776643
No 53
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=23.09 E-value=1.4e+02 Score=22.12 Aligned_cols=32 Identities=25% Similarity=0.578 Sum_probs=23.6
Q ss_pred CccccccCCCC---ceEEeccCc----cccchhhhhccc
Q 023869 2 KIWCDVCDKEE---ASVFCSADE----AALCVACDRRVH 33 (276)
Q Consensus 2 ~~~Cd~C~~a~---A~vyC~aD~----A~LC~~CD~~VH 33 (276)
.+.||.|+..+ -.+.|.... --||..|-..-+
T Consensus 21 ~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~ 59 (82)
T 2fc7_A 21 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLH 59 (82)
T ss_dssp SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCC
T ss_pred cCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCcc
Confidence 35899999754 568887665 469999976543
No 54
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=22.91 E-value=27 Score=25.25 Aligned_cols=29 Identities=31% Similarity=0.669 Sum_probs=24.9
Q ss_pred cccccCC---CCceEEeccCccccch-hhhhccc
Q 023869 4 WCDVCDK---EEASVFCSADEAALCV-ACDRRVH 33 (276)
Q Consensus 4 ~Cd~C~~---a~A~vyC~aD~A~LC~-~CD~~VH 33 (276)
+|.+|.. .++..-|....+..|. .|=+ .|
T Consensus 13 ~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k-~H 45 (59)
T 1x4s_A 13 PCGFCPAGEVQPARYTCPRCNAPYCSLRCYR-TH 45 (59)
T ss_dssp EECSSCTTCCEEECEECTTTCCEESSHHHHH-HH
T ss_pred cCcCCCCCcCCCccccCcCCCCCccChHHHH-HH
Confidence 7999985 7899999999999998 8865 44
No 55
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=22.64 E-value=77 Score=24.22 Aligned_cols=47 Identities=26% Similarity=0.486 Sum_probs=27.8
Q ss_pred ccccccCCCCceEEeccCccccchhhhhccccCccccCCcccccccCCCCCCCCccccccCc
Q 023869 3 IWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDICQER 64 (276)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~VHsAN~La~rH~RvpL~~p~~k~~pLCDvCqs~ 64 (276)
..|.+|++. +.-.+|..|++..|.. -+ .-||.. .+...|.|..|...
T Consensus 26 ~~C~vC~~~--------g~LL~CD~C~~~fH~~-----Cl-~PpL~~-~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 26 TICRVCQKP--------GDLVMCNQCEFCFHLD-----CH-LPALQD-VPGEEWSCSLCHVL 72 (88)
T ss_dssp SCCSSSCSS--------SCCEECTTSSCEECTT-----SS-STTCCC-CCSSSCCCCSCCCC
T ss_pred CcCcCcCCC--------CCEEECCCCCCceecc-----cC-CCCCCC-CcCCCcCCccccCC
Confidence 468888864 3567788999988864 11 112222 12345777666543
No 56
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=22.58 E-value=48 Score=28.09 Aligned_cols=47 Identities=26% Similarity=0.606 Sum_probs=27.7
Q ss_pred ccccccCCCCceEEeccCccccchhhhhccccCccccCCcccccccCCCCCCCCccccccCc
Q 023869 3 IWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDICQER 64 (276)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~VHsAN~La~rH~RvpL~~p~~k~~pLCDvCqs~ 64 (276)
..|.+|+.. +...+|..|++..|.. .|. .||.. .+...|.|..|...
T Consensus 8 ~~C~~C~~~--------g~ll~Cd~C~~~~H~~-----Cl~-p~l~~-~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 8 DWCAVCQNG--------GDLLCCEKCPKVFHLT-----CHV-PTLLS-FPSGDWICTFCRDI 54 (207)
T ss_dssp SSBTTTCCC--------EEEEECSSSSCEECTT-----TSS-SCCSS-CCSSCCCCTTTSCS
T ss_pred CCCCCCCCC--------CceEEcCCCCCccCCc-----cCC-CCCCC-CCCCCEEeCceeCc
Confidence 368888854 2466788899888863 221 12221 12345788777654
No 57
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.97 E-value=52 Score=22.33 Aligned_cols=46 Identities=28% Similarity=0.519 Sum_probs=28.3
Q ss_pred ccccccCCCCceEEeccCccccchhhhhccccCccccCCcccccccCCCCCCCCccccccC
Q 023869 3 IWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDICQE 63 (276)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~VHsAN~La~rH~RvpL~~p~~k~~pLCDvCqs 63 (276)
..|.+|++. +.-.+|..|++..|.. -+. .||.. .++..+.|..|..
T Consensus 10 ~~C~vC~~~--------g~ll~Cd~C~~~~H~~-----Cl~-ppl~~-~p~g~W~C~~C~~ 55 (56)
T 2yql_A 10 DFCSVCRKS--------GQLLMCDTCSRVYHLD-----CLD-PPLKT-IPKGMWICPRCQD 55 (56)
T ss_dssp CSCSSSCCS--------SCCEECSSSSCEECSS-----SSS-SCCCS-CCCSSCCCHHHHC
T ss_pred CCCccCCCC--------CeEEEcCCCCcceECc-----cCC-CCcCC-CCCCceEChhhhC
Confidence 468899864 4677888999888864 111 12221 1234578877754
No 58
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.85 E-value=37 Score=24.34 Aligned_cols=58 Identities=14% Similarity=0.314 Sum_probs=30.7
Q ss_pred CccccchhhhhccccCccccCCcccccccCCCCCCCCccccccCcceeEecccccccccccccc
Q 023869 20 DEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDICQERRALLFCQEDRAILCRECDI 83 (276)
Q Consensus 20 D~A~LC~~CD~~VHsAN~La~rH~RvpL~~p~~k~~pLCDvCqs~pA~vfC~~D~A~LC~~CD~ 83 (276)
..+..|..|+..|.....+...-... |+ .=-.|..|+..-..-|-..+..++|..|-.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~w---H~---~CF~C~~C~~~L~~~~~~~~g~~yC~~~y~ 70 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLALDKQW---HV---SCFKCQTCSVILTGEYISKDGVPYCESDYH 70 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEETTEEE---CT---TTCBCSSSCCBCSSCCEEETTEEECTTHHH
T ss_pred CCCCCCcCcCCeeCCCeEEEECCccc---cc---ccCCcCcCCCCcCCCeEEECCEEECHHHHH
Confidence 45678899988887443332211111 11 124676776543333445566677766643
No 59
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=21.80 E-value=37 Score=23.37 Aligned_cols=31 Identities=26% Similarity=0.609 Sum_probs=23.0
Q ss_pred CccccccCCC-CceEEeccCccc-cchhhhhcc
Q 023869 2 KIWCDVCDKE-EASVFCSADEAA-LCVACDRRV 32 (276)
Q Consensus 2 ~~~Cd~C~~a-~A~vyC~aD~A~-LC~~CD~~V 32 (276)
...||.|.+. ...+.|.....+ ||..|=..-
T Consensus 6 ~~~Cd~C~~~ig~R~~C~~C~dyDLC~~C~~~~ 38 (52)
T 1tot_A 6 VYTCNECKHHVETRWHCTVCEDYDLCINCYNTK 38 (52)
T ss_dssp CEEETTTTEEESSEEEESSSSSCEECHHHHHHH
T ss_pred EEECCCCCCCCcceEEcCCCCCchhHHHHHhCC
Confidence 4579999975 366889877655 999996543
No 60
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=21.60 E-value=26 Score=35.99 Aligned_cols=109 Identities=18% Similarity=0.282 Sum_probs=63.2
Q ss_pred CccccccCCC--CceEEeccCccccchhhhhc--cccCccccC-CcccccccCCC--CCCCCccccccCcceeE----ec
Q 023869 2 KIWCDVCDKE--EASVFCSADEAALCVACDRR--VHHANKLAS-KHPRFNLVSPS--YKESPLCDICQERRALL----FC 70 (276)
Q Consensus 2 ~~~Cd~C~~a--~A~vyC~aD~A~LC~~CD~~--VHsAN~La~-rH~RvpL~~p~--~k~~pLCDvCqs~pA~v----fC 70 (276)
++.|.+|+-. ..++.|..+.-.+|..-... -|--|-|.+ ||.-|.|+.-+ .....-|-.|+.+..++ -.
T Consensus 6 ~~~c~~c~~~~~~~~~~~~~~~~~fcn~~~~~~~shi~~h~~~~~~~~~~~~~~~~~~~~~~ec~~c~~~n~f~lg~~~~ 85 (800)
T 2wjy_A 6 IHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA 85 (800)
T ss_dssp TTSCTTTCCCCGGGEEEETTTTEEEESCCTTSSSCHHHHHHHHHTCCCEEECTTSTTCSCBCCCTTTCCCCTTTCEEEC-
T ss_pred chhccccCCCCCCeEEEcCCCCCccccCCCCCcccHHHHHHHHccCceEecCCCCCCCCceEEEeccCCCceeeeeceec
Confidence 3579999977 88999999999999955422 343444444 88888874322 24567899999987754 23
Q ss_pred cccc--ccccc-ccccCcc--cCCCccCCcceeeecCccccCCccc
Q 023869 71 QEDR--AILCR-ECDIPIH--KASEYTKKHNRFLLTGVKLTASASV 111 (276)
Q Consensus 71 ~~D~--A~LC~-~CD~~~H--sAN~la~rH~RvpL~g~~~s~~~~~ 111 (276)
..+. +.||+ .|-...- ..|-.. .+=--.+++-+.-+|-+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ 130 (800)
T 2wjy_A 86 KADSVVVLLCRQPCASQSSLKDINWDS-SQWQPLIQDRCFLSWLVK 130 (800)
T ss_dssp ----CCEECCTTTTSSTTC-----------CEESBCSSSBCTTTSC
T ss_pred ccCceEEEEecCcccccchhhccCCCH-HhcccccccccccHhhcC
Confidence 3355 47887 5744310 001111 222233666666666653
No 61
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=20.50 E-value=36 Score=23.66 Aligned_cols=54 Identities=24% Similarity=0.461 Sum_probs=30.9
Q ss_pred ccccccCCCCceEEeccCccccchhhhhccccCccccCCcccccccC--CCCCCCCccccccCcc
Q 023869 3 IWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVS--PSYKESPLCDICQERR 65 (276)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~VHsAN~La~rH~RvpL~~--p~~k~~pLCDvCqs~p 65 (276)
..|.+|+..... ..+.-.+|..|+...|.. -|. .||.. ..+...++|..|....
T Consensus 7 ~~C~vC~~~~~~---~~~~ll~Cd~C~~~~H~~-----C~~-p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 7 GVCTICQEEYSE---APNEMVICDKCGQGYHQL-----CHT-PHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCBSSSCCCCCB---TTBCEEECSSSCCEEETT-----TSS-SCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCC---CCCCEEECCCCChHHHhh-----hCC-CcccccccCCCCCEECCCCcCcc
Confidence 578999864211 234667888999999964 111 12211 0023468888876544
No 62
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.40 E-value=55 Score=22.98 Aligned_cols=62 Identities=13% Similarity=0.305 Sum_probs=34.1
Q ss_pred EEeccCc----cccchhhhhccccCccccCCcccccccCCCCCCCCccccccCcce--eEec-ccccccccccccc
Q 023869 15 VFCSADE----AALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDICQERRA--LLFC-QEDRAILCRECDI 83 (276)
Q Consensus 15 vyC~aD~----A~LC~~CD~~VHsAN~La~rH~RvpL~~p~~k~~pLCDvCqs~pA--~vfC-~~D~A~LC~~CD~ 83 (276)
.||..|- +..|..|+..|- ...+...-..+ | ..=-.|..|...-. ..|. ..+..++|..|-.
T Consensus 4 ~yC~~~y~~~~~~~C~~C~~~I~-~~~~~a~~~~~---H---~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~ 72 (81)
T 1x6a_A 4 GSSGKDYWGKFGEFCHGCSLLMT-GPFMVAGEFKY---H---PECFACMSCKVIIEDGDAYALVQHATLYCGKCHN 72 (81)
T ss_dssp CCCCCCSSCCSSCBCTTTCCBCC-SCCBCCTTCCB---C---TTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHH
T ss_pred ccchhHHhhhcCCcCccCCCCcC-ceEEEECCcee---c---cccCCccCCCCccCCCCcEEEeeCCEEECHHHHH
Confidence 4666553 457999999888 33322211111 1 11246777776543 3454 3566777777643
No 63
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.39 E-value=45 Score=23.72 Aligned_cols=25 Identities=24% Similarity=0.595 Sum_probs=22.7
Q ss_pred cccccCCCCceEEeccCccccch-hhh
Q 023869 4 WCDVCDKEEASVFCSADEAALCV-ACD 29 (276)
Q Consensus 4 ~Cd~C~~a~A~vyC~aD~A~LC~-~CD 29 (276)
+|++|+. ++..-|....+..|. .|=
T Consensus 14 ~C~vC~~-~~kY~CPrC~~~yCSl~C~ 39 (56)
T 2yqq_A 14 VCVICLE-KPKYRCPACRVPYCSVVCF 39 (56)
T ss_dssp CCTTTCS-CCSEECTTTCCEESSHHHH
T ss_pred ccCcCcC-CCeeeCCCCCCCeeCHHHH
Confidence 5999999 999999999999998 663
No 64
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=20.37 E-value=35 Score=22.50 Aligned_cols=26 Identities=27% Similarity=0.811 Sum_probs=21.1
Q ss_pred ccccccCCCCceEEeccCccccchhhhhccccC
Q 023869 3 IWCDVCDKEEASVFCSADEAALCVACDRRVHHA 35 (276)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~VHsA 35 (276)
..|+.|++. ++ .+..|..|...+|..
T Consensus 15 t~C~~C~~~---l~----qG~~C~~C~~~~H~~ 40 (52)
T 1faq_A 15 AFCDICQKF---LL----NGFRCQTCGYKFHEH 40 (52)
T ss_dssp EECTTSSSE---EC----SEEECTTTTCCBCST
T ss_pred cCCCCcccc---cc----cCCEeCCCCCeEChh
Confidence 479999873 44 789999999999974
No 65
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=20.07 E-value=37 Score=25.63 Aligned_cols=25 Identities=32% Similarity=0.627 Sum_probs=17.4
Q ss_pred cccccCCCCceEEeccCccccchhhhhcccc
Q 023869 4 WCDVCDKEEASVFCSADEAALCVACDRRVHH 34 (276)
Q Consensus 4 ~Cd~C~~a~A~vyC~aD~A~LC~~CD~~VHs 34 (276)
.|+.|+.... .-.+-|..||..+|-
T Consensus 49 ~C~~C~~~~~------~~~Y~C~~C~f~lH~ 73 (89)
T 1v5n_A 49 TCDKCEEEGT------IWSYHCDECDFDLHA 73 (89)
T ss_dssp CCTTTSCCCC------SCEEECTTTCCCCCH
T ss_pred EeCCCCCcCC------CcEEEcCCCCCeEcH
Confidence 6888887532 334677788888775
Done!