Query 023870
Match_columns 276
No_of_seqs 311 out of 2114
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 07:14:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023870.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023870hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4020 Protein DRE2, required 100.0 4.3E-53 9.2E-58 362.8 13.6 200 54-274 46-256 (257)
2 PF05093 CIAPIN1: Cytokine-ind 100.0 1.2E-49 2.6E-54 303.9 5.8 84 184-267 1-100 (100)
3 COG5636 Uncharacterized conser 100.0 3.5E-44 7.5E-49 305.4 6.9 193 55-271 47-275 (284)
4 COG2226 UbiE Methylase involve 99.5 7.1E-14 1.5E-18 124.4 11.5 97 4-100 49-161 (238)
5 PF01209 Ubie_methyltran: ubiE 99.5 1.7E-13 3.7E-18 122.0 9.3 95 4-98 45-156 (233)
6 PLN02233 ubiquinone biosynthes 99.3 2.4E-11 5.3E-16 109.8 13.5 96 4-99 71-186 (261)
7 PLN02232 ubiquinone biosynthes 99.3 1.5E-11 3.2E-16 103.3 10.3 76 23-98 4-84 (160)
8 PRK11873 arsM arsenite S-adeno 99.2 2E-10 4.3E-15 103.9 14.9 123 3-125 74-228 (272)
9 PF08241 Methyltransf_11: Meth 99.2 5.9E-11 1.3E-15 88.8 8.1 67 25-93 28-95 (95)
10 PLN02244 tocopherol O-methyltr 99.2 1.2E-10 2.7E-15 109.1 12.0 94 5-98 117-226 (340)
11 PTZ00098 phosphoethanolamine N 99.2 2.5E-10 5.5E-15 103.3 13.4 122 3-125 49-200 (263)
12 KOG1540 Ubiquinone biosynthesi 99.1 4.3E-10 9.3E-15 100.1 11.8 95 5-99 99-218 (296)
13 TIGR02752 MenG_heptapren 2-hep 99.1 1E-09 2.3E-14 96.6 13.7 95 4-98 43-154 (231)
14 PRK10258 biotin biosynthesis p 99.1 9.6E-10 2.1E-14 98.2 10.3 101 6-110 42-155 (251)
15 PLN02490 MPBQ/MSBQ methyltrans 99.0 3E-09 6.4E-14 99.7 12.7 142 5-148 112-283 (340)
16 PLN02336 phosphoethanolamine N 99.0 4.9E-09 1.1E-13 102.1 13.8 121 4-124 264-411 (475)
17 PLN02396 hexaprenyldihydroxybe 98.9 5.9E-09 1.3E-13 97.1 8.6 94 5-98 130-238 (322)
18 TIGR00740 methyltransferase, p 98.9 2.9E-08 6.3E-13 88.2 12.2 92 4-97 51-163 (239)
19 PRK15451 tRNA cmo(5)U34 methyl 98.8 3.6E-08 7.7E-13 88.3 12.1 92 4-97 54-166 (247)
20 PRK08317 hypothetical protein; 98.8 7E-08 1.5E-12 84.2 13.2 94 4-97 17-126 (241)
21 KOG4300 Predicted methyltransf 98.8 2.1E-08 4.5E-13 87.0 9.5 86 26-111 109-198 (252)
22 PRK11036 putative S-adenosyl-L 98.8 1.5E-08 3.3E-13 91.0 8.3 94 5-98 43-152 (255)
23 PRK15068 tRNA mo(5)U34 methylt 98.8 3.4E-08 7.3E-13 92.1 10.5 121 6-127 122-274 (322)
24 PF13847 Methyltransf_31: Meth 98.8 5.3E-08 1.1E-12 80.4 10.2 92 5-97 2-112 (152)
25 PRK14103 trans-aconitate 2-met 98.7 4.1E-08 8.8E-13 88.1 8.7 87 4-97 27-128 (255)
26 PRK00216 ubiE ubiquinone/menaq 98.7 3.9E-07 8.4E-12 79.8 14.1 93 5-97 50-160 (239)
27 TIGR02072 BioC biotin biosynth 98.7 1.7E-07 3.7E-12 81.9 11.8 93 7-102 35-142 (240)
28 PF13489 Methyltransf_23: Meth 98.7 1.5E-07 3.3E-12 77.2 9.7 90 4-98 20-118 (161)
29 TIGR00452 methyltransferase, p 98.7 1.2E-07 2.6E-12 88.1 10.2 121 5-126 120-272 (314)
30 COG2227 UbiG 2-polyprenyl-3-me 98.7 3.3E-08 7.1E-13 87.7 5.8 93 6-98 59-164 (243)
31 TIGR00477 tehB tellurite resis 98.7 1.8E-07 3.9E-12 80.9 10.0 90 6-96 30-134 (195)
32 smart00828 PKS_MT Methyltransf 98.6 2E-07 4.3E-12 81.6 10.4 117 9-126 2-143 (224)
33 PRK11207 tellurite resistance 98.6 2.9E-07 6.2E-12 79.8 10.2 90 5-95 29-134 (197)
34 TIGR01934 MenG_MenH_UbiE ubiqu 98.6 1.6E-06 3.5E-11 75.1 14.7 92 5-97 38-145 (223)
35 PF12847 Methyltransf_18: Meth 98.6 4.4E-07 9.6E-12 70.4 9.9 89 6-95 1-111 (112)
36 PRK00107 gidB 16S rRNA methylt 98.6 1.3E-06 2.7E-11 75.5 13.4 107 3-122 42-164 (187)
37 TIGR02716 C20_methyl_CrtF C-20 98.6 9.5E-07 2E-11 81.4 13.0 92 4-97 147-256 (306)
38 PRK01683 trans-aconitate 2-met 98.6 4E-07 8.7E-12 81.6 9.7 89 4-97 29-132 (258)
39 PRK05785 hypothetical protein; 98.5 8.5E-07 1.8E-11 78.6 11.4 77 5-88 50-140 (226)
40 PRK12335 tellurite resistance 98.5 5.6E-07 1.2E-11 82.4 10.2 89 7-96 121-224 (287)
41 PF13649 Methyltransf_25: Meth 98.5 7.6E-08 1.6E-12 74.0 3.5 67 23-89 31-101 (101)
42 PF02353 CMAS: Mycolic acid cy 98.5 5.9E-07 1.3E-11 82.0 9.7 92 3-97 59-168 (273)
43 PRK06922 hypothetical protein; 98.5 6.1E-07 1.3E-11 89.9 9.3 92 6-97 418-539 (677)
44 PRK00121 trmB tRNA (guanine-N( 98.4 2.3E-06 5E-11 74.4 11.1 111 5-122 39-176 (202)
45 TIGR00138 gidB 16S rRNA methyl 98.4 3.6E-06 7.7E-11 72.2 11.7 110 7-125 43-167 (181)
46 PRK04266 fibrillarin; Provisio 98.4 5.3E-06 1.2E-10 73.7 13.1 121 3-130 69-213 (226)
47 PRK11088 rrmA 23S rRNA methylt 98.4 1.2E-06 2.6E-11 79.5 9.1 89 6-104 85-190 (272)
48 TIGR00537 hemK_rel_arch HemK-r 98.4 6.2E-06 1.3E-10 70.0 11.8 109 6-123 19-161 (179)
49 KOG2940 Predicted methyltransf 98.3 4.1E-07 8.9E-12 80.2 3.9 81 26-107 105-186 (325)
50 COG2521 Predicted archaeal met 98.3 6.7E-07 1.5E-11 79.0 5.1 125 3-127 131-277 (287)
51 PLN03075 nicotianamine synthas 98.3 3.6E-06 7.7E-11 77.5 10.1 88 6-95 123-233 (296)
52 PLN02336 phosphoethanolamine N 98.3 4.5E-06 9.9E-11 81.4 11.4 119 6-125 37-180 (475)
53 TIGR01983 UbiG ubiquinone bios 98.3 8.8E-06 1.9E-10 71.0 11.2 92 6-97 45-151 (224)
54 PRK05134 bifunctional 3-demeth 98.3 1.2E-05 2.6E-10 70.9 11.9 93 5-97 47-153 (233)
55 PRK14967 putative methyltransf 98.3 2.8E-05 6.1E-10 68.4 14.1 93 4-97 34-161 (223)
56 PTZ00146 fibrillarin; Provisio 98.3 2.5E-05 5.3E-10 71.8 13.9 121 4-131 130-275 (293)
57 TIGR00091 tRNA (guanine-N(7)-) 98.3 9.1E-06 2E-10 70.2 10.5 92 6-97 16-134 (194)
58 PRK11705 cyclopropane fatty ac 98.2 5.4E-06 1.2E-10 79.1 9.7 89 4-97 165-269 (383)
59 smart00138 MeTrc Methyltransfe 98.2 1.4E-06 3.1E-11 78.9 4.9 54 42-95 186-242 (264)
60 PF08242 Methyltransf_12: Meth 98.2 1.2E-06 2.7E-11 66.7 3.5 66 26-91 30-99 (99)
61 PF03848 TehB: Tellurite resis 98.2 1.4E-05 3.1E-10 69.2 10.2 93 3-97 28-135 (192)
62 PRK08287 cobalt-precorrin-6Y C 98.1 3.5E-05 7.6E-10 65.8 11.0 111 4-125 29-154 (187)
63 TIGR03587 Pse_Me-ase pseudamin 98.1 2E-05 4.4E-10 68.8 9.6 89 3-98 40-145 (204)
64 PRK13944 protein-L-isoaspartat 98.1 2.4E-05 5.3E-10 68.1 9.5 87 4-95 70-173 (205)
65 TIGR02469 CbiT precorrin-6Y C5 98.1 3E-05 6.6E-10 60.7 9.1 90 4-95 17-122 (124)
66 TIGR01177 conserved hypothetic 98.0 3.6E-05 7.9E-10 71.8 10.3 112 3-125 179-313 (329)
67 KOG3045 Predicted RNA methylas 98.0 1.3E-05 2.9E-10 71.9 6.9 77 44-125 213-289 (325)
68 PRK13942 protein-L-isoaspartat 98.0 3.8E-05 8.2E-10 67.3 9.5 87 4-95 74-176 (212)
69 PF05148 Methyltransf_8: Hypot 98.0 1E-05 2.2E-10 70.7 5.7 76 45-125 108-183 (219)
70 COG2230 Cfa Cyclopropane fatty 98.0 3E-05 6.5E-10 70.9 8.8 93 3-98 69-179 (283)
71 PRK06202 hypothetical protein; 98.0 3.5E-05 7.7E-10 68.0 8.7 90 5-98 59-169 (232)
72 PRK11188 rrmJ 23S rRNA methylt 97.9 4.1E-05 9E-10 67.0 8.6 94 3-98 48-168 (209)
73 KOG1270 Methyltransferases [Co 97.9 1.4E-05 3E-10 71.8 5.7 89 7-98 90-198 (282)
74 PF08003 Methyltransf_9: Prote 97.9 5.9E-05 1.3E-09 69.4 9.4 85 43-128 167-268 (315)
75 PRK14968 putative methyltransf 97.9 0.00016 3.5E-09 61.0 11.5 112 5-124 22-170 (188)
76 PRK00377 cbiT cobalt-precorrin 97.9 0.00015 3.3E-09 62.6 11.3 110 4-124 38-166 (198)
77 TIGR03534 RF_mod_PrmC protein- 97.9 0.00021 4.7E-09 63.2 12.1 110 7-125 88-239 (251)
78 TIGR03840 TMPT_Se_Te thiopurin 97.9 0.00012 2.7E-09 64.3 10.4 93 5-97 33-154 (213)
79 COG4106 Tam Trans-aconitate me 97.9 1.2E-05 2.5E-10 70.6 3.5 68 26-98 64-132 (257)
80 TIGR00080 pimt protein-L-isoas 97.8 0.00012 2.5E-09 64.1 9.5 87 4-95 75-177 (215)
81 PRK00517 prmA ribosomal protei 97.8 0.00015 3.3E-09 65.0 10.3 108 4-126 117-237 (250)
82 TIGR02021 BchM-ChlM magnesium 97.8 0.00012 2.6E-09 64.0 9.2 87 5-94 54-157 (219)
83 PF05401 NodS: Nodulation prot 97.8 0.00013 2.7E-09 63.4 8.5 72 24-97 73-148 (201)
84 PRK07580 Mg-protoporphyrin IX 97.8 0.00022 4.8E-09 62.3 10.3 85 5-92 62-163 (230)
85 KOG3010 Methyltransferase [Gen 97.8 6.7E-05 1.4E-09 66.8 6.8 73 25-97 64-139 (261)
86 KOG1541 Predicted protein carb 97.8 0.00019 4.1E-09 63.3 9.3 107 7-122 51-182 (270)
87 PRK14121 tRNA (guanine-N(7)-)- 97.7 0.00018 4E-09 68.6 9.8 92 6-97 122-237 (390)
88 PF13659 Methyltransf_26: Meth 97.7 0.00012 2.6E-09 57.1 6.7 90 7-96 1-116 (117)
89 TIGR00406 prmA ribosomal prote 97.7 0.00021 4.6E-09 65.5 8.9 90 4-97 157-261 (288)
90 PRK13255 thiopurine S-methyltr 97.6 0.00047 1E-08 60.9 10.3 90 5-94 36-154 (218)
91 PRK09489 rsmC 16S ribosomal RN 97.6 0.00027 5.8E-09 66.6 9.3 89 7-97 197-305 (342)
92 PF00891 Methyltransf_2: O-met 97.6 0.00028 6E-09 62.6 8.7 85 5-97 99-201 (241)
93 PF05175 MTS: Methyltransferas 97.6 0.00066 1.4E-08 57.3 10.4 91 6-97 31-142 (170)
94 PRK00312 pcm protein-L-isoaspa 97.6 0.00053 1.2E-08 59.7 9.8 88 4-96 76-176 (212)
95 PF07021 MetW: Methionine bios 97.6 0.00026 5.6E-09 61.2 7.2 112 2-124 9-130 (193)
96 PRK00811 spermidine synthase; 97.5 0.00086 1.9E-08 61.4 10.5 93 5-97 75-193 (283)
97 PLN02585 magnesium protoporphy 97.5 0.0014 3.1E-08 61.0 11.7 83 6-92 144-247 (315)
98 PRK09328 N5-glutamine S-adenos 97.5 0.0021 4.7E-08 57.7 12.4 112 5-125 107-260 (275)
99 COG4123 Predicted O-methyltran 97.5 0.0018 3.9E-08 58.3 11.6 135 3-145 41-212 (248)
100 PRK01581 speE spermidine synth 97.5 0.0011 2.5E-08 62.7 10.8 116 5-123 149-293 (374)
101 TIGR02081 metW methionine bios 97.4 0.00039 8.5E-09 59.7 7.0 79 3-87 10-104 (194)
102 KOG1269 SAM-dependent methyltr 97.4 0.00025 5.4E-09 67.2 6.1 96 3-98 107-218 (364)
103 TIGR00438 rrmJ cell division p 97.4 0.00081 1.8E-08 57.5 8.6 91 3-97 29-148 (188)
104 PF01135 PCMT: Protein-L-isoas 97.4 0.00049 1.1E-08 60.4 7.3 88 4-96 70-173 (209)
105 PRK10901 16S rRNA methyltransf 97.4 0.0026 5.6E-08 61.6 12.8 94 4-97 242-374 (427)
106 cd02440 AdoMet_MTases S-adenos 97.4 0.0016 3.5E-08 47.6 8.9 54 41-94 47-103 (107)
107 TIGR03438 probable methyltrans 97.4 0.0011 2.4E-08 61.1 9.7 94 4-97 61-179 (301)
108 PRK15001 SAM-dependent 23S rib 97.4 0.0014 3.1E-08 62.5 10.4 89 7-96 229-341 (378)
109 PRK14901 16S rRNA methyltransf 97.3 0.0027 5.9E-08 61.5 12.4 94 4-97 250-386 (434)
110 PF03141 Methyltransf_29: Puta 97.3 0.00022 4.8E-09 69.4 4.7 72 50-121 172-247 (506)
111 COG2519 GCD14 tRNA(1-methylade 97.3 0.0022 4.8E-08 57.6 10.4 113 3-127 91-220 (256)
112 PRK03612 spermidine synthase; 97.3 0.0013 2.8E-08 65.3 9.7 113 5-120 296-437 (521)
113 TIGR00563 rsmB ribosomal RNA s 97.3 0.0034 7.3E-08 60.7 12.2 95 4-98 236-371 (426)
114 PRK14966 unknown domain/N5-glu 97.3 0.0037 8.1E-08 60.3 12.2 114 4-125 249-403 (423)
115 COG2518 Pcm Protein-L-isoaspar 97.3 0.0023 5E-08 56.1 9.6 89 3-96 69-170 (209)
116 PRK07402 precorrin-6B methylas 97.3 0.0019 4.2E-08 55.5 9.1 91 4-97 38-144 (196)
117 COG2264 PrmA Ribosomal protein 97.2 0.0028 6E-08 58.5 10.5 116 3-127 159-288 (300)
118 KOG2361 Predicted methyltransf 97.2 0.0016 3.4E-08 58.2 8.4 74 52-125 137-235 (264)
119 TIGR03533 L3_gln_methyl protei 97.2 0.0056 1.2E-07 56.1 12.3 107 6-122 121-269 (284)
120 PRK13943 protein-L-isoaspartat 97.2 0.002 4.3E-08 60.2 9.2 87 4-95 78-180 (322)
121 TIGR00536 hemK_fam HemK family 97.2 0.0056 1.2E-07 56.0 11.8 109 8-125 116-267 (284)
122 PRK10611 chemotaxis methyltran 97.1 0.00053 1.1E-08 63.1 4.8 53 43-95 206-262 (287)
123 PRK14904 16S rRNA methyltransf 97.1 0.0038 8.3E-08 60.7 10.2 94 4-98 248-380 (445)
124 PLN02366 spermidine synthase 97.1 0.0025 5.4E-08 59.2 8.3 91 5-95 90-206 (308)
125 PRK14903 16S rRNA methyltransf 97.0 0.0079 1.7E-07 58.4 11.9 95 4-98 235-369 (431)
126 PF08704 GCD14: tRNA methyltra 97.0 0.0054 1.2E-07 55.3 9.9 114 3-127 37-171 (247)
127 PF01739 CheR: CheR methyltran 97.0 0.00099 2.2E-08 57.9 4.9 54 42-95 119-175 (196)
128 PF05891 Methyltransf_PK: AdoM 97.0 0.0012 2.5E-08 58.2 5.2 101 26-126 88-200 (218)
129 TIGR00446 nop2p NOL1/NOP2/sun 97.0 0.008 1.7E-07 54.4 10.8 94 4-97 69-201 (264)
130 PRK13256 thiopurine S-methyltr 97.0 0.0065 1.4E-07 54.0 9.7 93 5-97 42-165 (226)
131 KOG1331 Predicted methyltransf 96.8 0.00099 2.1E-08 60.7 3.4 55 44-98 88-146 (293)
132 PHA03411 putative methyltransf 96.8 0.0081 1.8E-07 54.9 9.3 112 6-123 64-210 (279)
133 PRK04457 spermidine synthase; 96.8 0.0097 2.1E-07 53.9 9.8 94 5-98 65-180 (262)
134 PRK14902 16S rRNA methyltransf 96.8 0.018 4E-07 55.9 12.2 93 4-97 248-381 (444)
135 COG4798 Predicted methyltransf 96.8 0.0074 1.6E-07 52.4 8.1 119 2-124 44-202 (238)
136 COG4627 Uncharacterized protei 96.7 0.00042 9.1E-09 57.9 0.3 55 43-97 31-88 (185)
137 PF03291 Pox_MCEL: mRNA cappin 96.6 0.013 2.8E-07 55.0 9.7 92 6-97 62-188 (331)
138 PRK00536 speE spermidine synth 96.6 0.02 4.3E-07 52.0 10.4 106 7-123 73-195 (262)
139 PRK11805 N5-glutamine S-adenos 96.6 0.012 2.6E-07 54.6 9.1 88 8-96 135-264 (307)
140 PF06325 PrmA: Ribosomal prote 96.5 0.017 3.6E-07 53.5 9.3 111 4-126 159-282 (295)
141 PF06080 DUF938: Protein of un 96.5 0.013 2.8E-07 51.3 8.0 41 57-97 100-143 (204)
142 TIGR00417 speE spermidine synt 96.5 0.021 4.6E-07 51.8 9.8 90 6-95 72-186 (270)
143 PF11968 DUF3321: Putative met 96.5 0.0053 1.2E-07 54.0 5.4 82 45-126 87-180 (219)
144 COG1041 Predicted DNA modifica 96.4 0.013 2.9E-07 54.9 8.2 113 2-126 193-329 (347)
145 smart00650 rADc Ribosomal RNA 96.4 0.013 2.9E-07 49.1 7.4 89 4-95 11-113 (169)
146 PF01564 Spermine_synth: Sperm 96.3 0.046 1E-06 49.1 10.6 113 5-120 75-213 (246)
147 PRK01544 bifunctional N5-gluta 96.3 0.047 1E-06 54.2 11.4 110 7-125 139-291 (506)
148 COG2242 CobL Precorrin-6B meth 96.2 0.076 1.7E-06 45.8 10.8 109 3-121 31-154 (187)
149 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.1 0.025 5.4E-07 51.3 7.8 80 45-124 138-236 (256)
150 PF01269 Fibrillarin: Fibrilla 96.1 0.081 1.7E-06 46.9 10.8 124 3-134 70-219 (229)
151 PF07942 N2227: N2227-like pro 96.1 0.0098 2.1E-07 54.2 5.1 84 42-125 145-240 (270)
152 PF05219 DREV: DREV methyltran 96.0 0.024 5.2E-07 51.3 7.3 83 6-96 94-189 (265)
153 PF02390 Methyltransf_4: Putat 96.0 0.074 1.6E-06 46.1 10.3 56 41-96 67-134 (195)
154 COG4976 Predicted methyltransf 96.0 0.013 2.8E-07 52.3 5.2 116 8-127 127-265 (287)
155 PLN02823 spermine synthase 95.9 0.031 6.8E-07 52.6 8.0 90 6-95 103-220 (336)
156 COG2813 RsmC 16S RNA G1207 met 95.9 0.06 1.3E-06 49.7 9.5 89 7-97 159-268 (300)
157 COG1352 CheR Methylase of chem 95.9 0.014 3.1E-07 53.2 5.4 53 43-95 186-241 (268)
158 KOG1975 mRNA cap methyltransfe 95.9 0.022 4.8E-07 53.0 6.4 94 4-97 115-239 (389)
159 TIGR03704 PrmC_rel_meth putati 95.8 0.14 3E-06 46.1 11.6 105 8-122 88-235 (251)
160 PF05724 TPMT: Thiopurine S-me 95.8 0.056 1.2E-06 47.7 8.8 89 4-92 35-152 (218)
161 PF06859 Bin3: Bicoid-interact 95.7 0.0051 1.1E-07 48.5 1.6 37 59-95 1-44 (110)
162 PF03059 NAS: Nicotianamine sy 95.6 0.047 1E-06 50.0 7.7 87 8-95 122-230 (276)
163 COG0421 SpeE Spermidine syntha 95.6 0.048 1E-06 50.1 7.7 88 9-96 79-191 (282)
164 KOG1271 Methyltransferases [Ge 95.5 0.075 1.6E-06 45.9 7.9 113 6-126 67-204 (227)
165 COG0500 SmtA SAM-dependent met 95.4 0.085 1.9E-06 40.0 7.4 56 43-98 100-158 (257)
166 PLN02781 Probable caffeoyl-CoA 95.4 0.058 1.3E-06 48.0 7.2 88 5-95 67-178 (234)
167 PF02527 GidB: rRNA small subu 95.2 0.21 4.6E-06 43.0 9.8 84 9-96 51-149 (184)
168 KOG1709 Guanidinoacetate methy 95.1 0.072 1.6E-06 47.1 6.7 93 5-97 100-208 (271)
169 COG0220 Predicted S-adenosylme 95.0 0.14 2.9E-06 45.7 8.4 67 30-96 86-165 (227)
170 PF05430 Methyltransf_30: S-ad 94.6 0.027 5.9E-07 45.4 2.7 72 41-123 31-107 (124)
171 KOG2352 Predicted spermine/spe 94.6 0.072 1.6E-06 52.0 6.0 57 41-97 96-163 (482)
172 PRK15128 23S rRNA m(5)C1962 me 94.6 0.4 8.6E-06 46.2 11.1 93 5-97 219-341 (396)
173 KOG2899 Predicted methyltransf 94.6 0.043 9.4E-07 49.3 4.0 43 53-95 160-209 (288)
174 PRK13168 rumA 23S rRNA m(5)U19 94.4 0.3 6.6E-06 47.5 9.9 90 4-96 295-401 (443)
175 PF01170 UPF0020: Putative RNA 94.3 0.11 2.4E-06 44.3 6.0 69 26-95 71-150 (179)
176 PF03269 DUF268: Caenorhabditi 94.3 0.043 9.3E-07 46.3 3.2 71 57-127 61-145 (177)
177 PRK11783 rlmL 23S rRNA m(2)G24 94.2 0.2 4.4E-06 51.6 8.7 93 5-97 537-658 (702)
178 PLN02672 methionine S-methyltr 93.7 0.66 1.4E-05 50.0 11.5 113 7-128 119-304 (1082)
179 PF01861 DUF43: Protein of unk 93.7 0.72 1.6E-05 41.4 10.0 115 6-125 44-176 (243)
180 PF05185 PRMT5: PRMT5 arginine 93.4 0.42 9.2E-06 46.7 8.8 52 40-92 240-294 (448)
181 COG4262 Predicted spermidine s 93.2 0.35 7.5E-06 46.1 7.5 117 3-122 286-431 (508)
182 COG0357 GidB Predicted S-adeno 93.1 0.98 2.1E-05 39.9 9.9 110 7-124 68-192 (215)
183 PRK11933 yebU rRNA (cytosine-C 92.7 0.63 1.4E-05 45.8 9.0 94 4-97 111-244 (470)
184 PRK13699 putative methylase; P 92.6 0.23 5E-06 44.1 5.3 72 45-124 4-93 (227)
185 PF12147 Methyltransf_20: Puta 92.4 0.87 1.9E-05 42.1 8.7 101 26-126 171-297 (311)
186 TIGR00479 rumA 23S rRNA (uraci 92.2 1.1 2.5E-05 43.2 10.0 90 4-95 290-396 (431)
187 KOG3178 Hydroxyindole-O-methyl 92.2 0.55 1.2E-05 44.2 7.4 52 43-97 223-277 (342)
188 COG4122 Predicted O-methyltran 92.1 0.33 7.1E-06 43.0 5.6 70 26-98 94-169 (219)
189 PRK10909 rsmD 16S rRNA m(2)G96 92.0 1.1 2.3E-05 39.1 8.6 93 5-97 52-161 (199)
190 PRK01544 bifunctional N5-gluta 91.8 0.61 1.3E-05 46.3 7.8 55 42-96 398-463 (506)
191 PF03141 Methyltransf_29: Puta 91.6 0.15 3.3E-06 50.1 3.2 47 51-97 419-469 (506)
192 KOG1661 Protein-L-isoaspartate 91.6 0.98 2.1E-05 39.9 7.8 88 3-96 79-194 (237)
193 PLN02476 O-methyltransferase 91.4 0.69 1.5E-05 42.4 7.1 89 5-96 117-229 (278)
194 PLN02668 indole-3-acetate carb 91.3 2.3 5E-05 40.8 10.7 74 54-127 157-278 (386)
195 PHA03412 putative methyltransf 90.8 0.93 2E-05 40.7 7.1 79 7-90 50-158 (241)
196 KOG1499 Protein arginine N-met 90.5 0.75 1.6E-05 43.3 6.5 86 6-92 60-164 (346)
197 PRK11524 putative methyltransf 90.4 0.33 7.3E-06 44.3 4.1 52 44-95 10-80 (284)
198 COG2890 HemK Methylase of poly 90.1 4 8.6E-05 37.4 10.9 102 9-120 113-255 (280)
199 COG1889 NOP1 Fibrillarin-like 89.6 9.3 0.0002 33.7 12.0 120 4-131 74-218 (231)
200 PF09243 Rsm22: Mitochondrial 89.4 3 6.4E-05 38.0 9.4 110 8-124 35-165 (274)
201 PRK14896 ksgA 16S ribosomal RN 88.5 3.3 7.1E-05 37.2 9.0 65 4-71 27-103 (258)
202 PF01596 Methyltransf_3: O-met 88.1 1.7 3.7E-05 38.0 6.7 69 26-97 80-157 (205)
203 KOG1500 Protein arginine N-met 88.0 1.8 3.9E-05 40.9 7.0 86 7-93 178-280 (517)
204 PF06962 rRNA_methylase: Putat 87.5 1.4 3E-05 36.3 5.4 74 24-97 7-94 (140)
205 PRK03522 rumB 23S rRNA methylu 86.7 3.4 7.4E-05 38.2 8.2 90 6-97 173-276 (315)
206 COG1092 Predicted SAM-dependen 85.9 1.5 3.2E-05 42.2 5.4 76 23-98 247-339 (393)
207 PF11899 DUF3419: Protein of u 85.9 1.7 3.7E-05 41.7 5.8 59 41-99 275-338 (380)
208 PF10294 Methyltransf_16: Puta 85.8 3.1 6.7E-05 35.1 6.8 42 56-97 116-158 (173)
209 TIGR00755 ksgA dimethyladenosi 85.6 5 0.00011 35.8 8.5 83 4-93 27-124 (253)
210 KOG1596 Fibrillarin and relate 84.5 23 0.00049 32.2 11.8 118 4-130 154-298 (317)
211 PLN02589 caffeoyl-CoA O-methyl 83.7 1.9 4.1E-05 38.8 4.8 69 26-96 114-191 (247)
212 KOG2798 Putative trehalase [Ca 82.6 1.9 4.2E-05 40.3 4.4 68 58-125 258-335 (369)
213 PRK01747 mnmC bifunctional tRN 82.3 2.2 4.7E-05 43.6 5.2 69 43-122 149-222 (662)
214 PF02475 Met_10: Met-10+ like- 82.0 7.2 0.00016 34.0 7.6 86 3-92 98-199 (200)
215 KOG3201 Uncharacterized conser 79.6 2.6 5.6E-05 35.9 3.8 63 55-123 99-162 (201)
216 PF10672 Methyltrans_SAM: S-ad 78.2 3.3 7.1E-05 38.2 4.5 75 24-98 154-241 (286)
217 PF03492 Methyltransf_7: SAM d 77.5 44 0.00094 31.4 11.9 79 48-126 96-221 (334)
218 TIGR02085 meth_trns_rumB 23S r 77.2 11 0.00023 35.9 7.9 89 6-96 233-335 (374)
219 COG3963 Phospholipid N-methylt 76.8 19 0.00041 30.9 8.2 58 41-98 94-159 (194)
220 PRK11783 rlmL 23S rRNA m(2)G24 76.5 5.8 0.00013 41.0 6.2 74 23-96 263-348 (702)
221 COG0116 Predicted N6-adenine-s 76.2 7.1 0.00015 37.4 6.2 73 24-96 262-345 (381)
222 PRK00274 ksgA 16S ribosomal RN 76.1 6.4 0.00014 35.6 5.8 64 4-69 40-115 (272)
223 COG0144 Sun tRNA and rRNA cyto 75.8 17 0.00037 34.4 8.7 94 4-97 154-290 (355)
224 COG5459 Predicted rRNA methyla 74.2 9.8 0.00021 36.4 6.4 47 52-98 177-228 (484)
225 PTZ00338 dimethyladenosine tra 73.4 12 0.00026 34.6 6.8 67 4-72 34-114 (294)
226 KOG0822 Protein kinase inhibit 72.1 7.7 0.00017 38.8 5.4 56 39-94 419-477 (649)
227 PF03602 Cons_hypoth95: Conser 71.8 8.3 0.00018 33.0 5.1 92 6-97 42-155 (183)
228 PF14740 DUF4471: Domain of un 71.6 9.3 0.0002 35.3 5.6 64 57-125 220-287 (289)
229 KOG3507 DNA-directed RNA polym 71.5 1.6 3.4E-05 30.5 0.4 20 235-254 21-46 (62)
230 COG0293 FtsJ 23S rRNA methylas 71.3 24 0.00053 30.9 7.9 95 2-98 41-162 (205)
231 KOG1663 O-methyltransferase [S 71.3 11 0.00024 33.7 5.8 52 41-95 125-183 (237)
232 KOG3987 Uncharacterized conser 70.8 4.9 0.00011 35.6 3.4 40 57-96 167-208 (288)
233 COG2520 Predicted methyltransf 70.7 42 0.00092 31.8 9.9 114 3-120 185-313 (341)
234 PRK04338 N(2),N(2)-dimethylgua 69.2 15 0.00033 35.1 6.8 84 8-94 59-157 (382)
235 COG0742 N6-adenine-specific me 68.6 37 0.00081 29.3 8.4 92 6-97 43-156 (187)
236 KOG1562 Spermidine synthase [A 68.4 16 0.00035 34.1 6.3 58 38-95 172-236 (337)
237 PF14801 GCD14_N: tRNA methylt 68.3 2.5 5.3E-05 29.0 0.8 13 258-270 5-17 (54)
238 TIGR03439 methyl_EasF probable 68.1 12 0.00027 34.9 5.8 70 26-95 114-197 (319)
239 cd05565 PTS_IIB_lactose PTS_II 67.9 15 0.00032 28.4 5.2 77 9-95 2-78 (99)
240 PF06557 DUF1122: Protein of u 67.4 12 0.00027 31.6 5.0 70 75-148 66-142 (170)
241 PF10354 DUF2431: Domain of un 64.1 18 0.00039 30.5 5.5 75 48-127 60-152 (166)
242 TIGR00095 RNA methyltransferas 63.7 62 0.0013 27.6 8.9 91 6-96 49-160 (189)
243 COG0541 Ffh Signal recognition 62.9 46 0.001 32.6 8.6 107 5-121 126-245 (451)
244 PF06283 ThuA: Trehalose utili 61.9 57 0.0012 28.1 8.5 82 9-95 1-88 (217)
245 PF13909 zf-H2C2_5: C2H2-type 61.7 3.4 7.3E-05 22.9 0.5 11 246-256 1-11 (24)
246 TIGR01753 flav_short flavodoxi 61.4 76 0.0017 24.7 8.9 108 10-124 1-115 (140)
247 PF01555 N6_N4_Mtase: DNA meth 60.9 5.9 0.00013 33.7 2.1 23 75-97 36-58 (231)
248 PF08123 DOT1: Histone methyla 59.7 19 0.00041 31.5 5.0 88 4-93 40-156 (205)
249 KOG2915 tRNA(1-methyladenosine 59.4 1E+02 0.0023 28.5 9.7 115 3-128 102-236 (314)
250 COG1064 AdhP Zn-dependent alco 58.8 35 0.00076 32.3 6.9 33 59-97 229-261 (339)
251 PF13578 Methyltransf_24: Meth 58.6 3.9 8.4E-05 31.0 0.5 54 41-95 49-105 (106)
252 KOG1099 SAM-dependent methyltr 57.2 15 0.00032 33.2 3.9 55 43-97 91-165 (294)
253 COG2263 Predicted RNA methylas 55.9 1.4E+02 0.003 26.1 10.0 106 7-126 46-167 (198)
254 cd05564 PTS_IIB_chitobiose_lic 54.7 22 0.00047 27.0 4.1 78 9-96 1-79 (96)
255 COG3897 Predicted methyltransf 54.7 1.1E+02 0.0023 27.1 8.6 88 6-97 79-181 (218)
256 TIGR01754 flav_RNR ribonucleot 53.9 70 0.0015 25.5 7.2 58 8-69 1-60 (140)
257 TIGR00853 pts-lac PTS system, 51.1 28 0.00061 26.4 4.2 71 9-89 5-75 (95)
258 PF04672 Methyltransf_19: S-ad 50.3 48 0.0011 30.3 6.2 57 43-99 123-194 (267)
259 PF01728 FtsJ: FtsJ-like methy 49.4 33 0.00071 28.6 4.8 41 58-98 90-142 (181)
260 COG1568 Predicted methyltransf 47.7 95 0.0021 28.9 7.6 111 7-124 153-285 (354)
261 PF05566 Pox_vIL-18BP: Orthopo 47.4 5.3 0.00011 31.5 -0.4 13 245-259 36-49 (126)
262 PF11604 CusF_Ec: Copper bindi 45.6 14 0.0003 26.5 1.6 11 258-268 42-52 (70)
263 PF01189 Nol1_Nop2_Fmu: NOL1/N 45.1 24 0.00052 32.2 3.5 92 5-96 84-220 (283)
264 KOG2904 Predicted methyltransf 43.8 1.1E+02 0.0024 28.4 7.4 75 23-97 179-287 (328)
265 PF01558 POR: Pyruvate ferredo 43.1 48 0.001 27.5 4.8 38 53-97 50-88 (173)
266 PRK10862 SoxR reducing system 43.0 25 0.00055 29.2 3.0 11 258-268 58-68 (154)
267 PF05484 LRV_FeS: LRV protein 42.5 13 0.00029 25.8 1.0 15 242-256 8-22 (57)
268 PRK00432 30S ribosomal protein 41.7 14 0.0003 24.9 1.0 11 244-254 36-46 (50)
269 TIGR00006 S-adenosyl-methyltra 41.4 28 0.00061 32.4 3.3 23 75-97 220-242 (305)
270 TIGR01755 flav_wrbA NAD(P)H:qu 41.3 2.3E+02 0.0049 24.2 9.3 25 9-33 2-26 (197)
271 COG0275 Predicted S-adenosylme 40.5 25 0.00054 32.8 2.8 23 75-97 224-246 (314)
272 PRK06756 flavodoxin; Provision 39.5 2E+02 0.0043 23.0 11.3 110 8-124 2-119 (148)
273 PRK09271 flavodoxin; Provision 39.3 2E+02 0.0042 23.6 7.9 74 8-85 1-82 (160)
274 KOG0820 Ribosomal RNA adenine 39.2 1.1E+02 0.0024 28.4 6.6 66 3-70 55-134 (315)
275 PF04246 RseC_MucC: Positive r 38.8 38 0.00082 27.2 3.4 13 257-269 50-62 (135)
276 KOG2539 Mitochondrial/chloropl 38.7 75 0.0016 31.4 5.9 48 52-99 266-319 (491)
277 COG4635 HemG Flavodoxin [Energ 38.6 2.5E+02 0.0054 23.9 9.1 82 8-95 1-89 (175)
278 PF11575 FhuF_C: FhuF 2Fe-2S C 38.5 21 0.00044 19.9 1.2 12 243-254 11-22 (22)
279 PF11253 DUF3052: Protein of u 37.0 1.1E+02 0.0024 24.7 5.7 69 57-127 43-111 (127)
280 KOG0024 Sorbitol dehydrogenase 36.7 1.5E+02 0.0033 28.0 7.3 88 3-99 166-277 (354)
281 cd05794 S1_EF-P_repeat_2 S1_EF 36.6 24 0.00052 24.4 1.6 15 256-270 34-49 (56)
282 PRK00050 16S rRNA m(4)C1402 me 36.3 37 0.0008 31.5 3.2 23 75-97 216-238 (296)
283 cd05567 PTS_IIB_mannitol PTS_I 35.4 1.4E+02 0.0031 21.7 5.9 52 9-67 2-53 (87)
284 PRK10310 PTS system galactitol 34.7 96 0.0021 23.3 4.9 55 9-67 4-58 (94)
285 PF01795 Methyltransf_5: MraW 34.2 32 0.00069 32.1 2.5 23 75-97 221-243 (310)
286 PRK11727 23S rRNA mA1618 methy 33.9 4E+02 0.0087 24.9 11.2 66 6-71 114-201 (321)
287 COG3086 RseC Positive regulato 32.8 19 0.00041 29.9 0.6 12 257-268 57-68 (150)
288 cd08298 CAD2 Cinnamyl alcohol 32.7 1.6E+02 0.0034 26.5 6.8 33 58-95 224-256 (329)
289 PRK00050 16S rRNA m(4)C1402 me 32.4 72 0.0016 29.5 4.5 74 5-79 18-113 (296)
290 smart00659 RPOLCX RNA polymera 32.1 31 0.00068 22.5 1.5 18 237-254 5-28 (44)
291 KOG2906 RNA polymerase III sub 31.8 19 0.0004 27.9 0.4 10 245-254 21-30 (105)
292 COG4121 Uncharacterized conser 31.6 83 0.0018 28.5 4.6 71 43-124 148-226 (252)
293 smart00739 KOW KOW (Kyprides, 31.6 35 0.00077 19.0 1.5 15 258-272 1-15 (28)
294 PF02384 N6_Mtase: N-6 DNA Met 30.2 1E+02 0.0023 27.9 5.2 77 44-122 108-208 (311)
295 PRK05031 tRNA (uracil-5-)-meth 29.4 1.8E+02 0.004 27.4 6.8 85 8-96 208-321 (362)
296 COG4353 Uncharacterized conser 29.2 74 0.0016 27.0 3.6 69 75-147 73-148 (192)
297 COG5379 BtaA S-adenosylmethion 29.2 68 0.0015 30.1 3.7 56 43-98 309-369 (414)
298 TIGR00959 ffh signal recogniti 29.0 3.4E+02 0.0073 26.5 8.7 41 57-97 180-223 (428)
299 PHA01519 hypothetical protein 29.0 24 0.00053 27.9 0.7 13 252-264 21-33 (115)
300 PF09926 DUF2158: Uncharacteri 29.0 36 0.00078 23.2 1.4 11 259-269 1-11 (53)
301 KOG3420 Predicted RNA methylas 29.0 45 0.00098 28.1 2.3 46 24-69 79-124 (185)
302 PF12225 MTHFR_C: Methylene-te 28.8 27 0.00058 27.0 0.9 12 234-245 23-34 (97)
303 PRK09489 rsmC 16S ribosomal RN 28.7 68 0.0015 30.2 3.7 40 58-97 75-114 (342)
304 TIGR00478 tly hemolysin TlyA f 28.6 1.5E+02 0.0032 26.3 5.7 30 58-95 142-171 (228)
305 PRK09590 celB cellobiose phosp 27.6 1.1E+02 0.0023 23.7 4.1 77 9-95 3-82 (104)
306 COG2813 RsmC 16S RNA G1207 met 27.5 1.5E+02 0.0032 27.7 5.6 39 59-97 37-75 (300)
307 COG2093 DNA-directed RNA polym 27.1 15 0.00033 26.0 -0.7 8 202-209 3-10 (64)
308 PRK08537 2-oxoglutarate ferred 27.0 1.7E+02 0.0037 24.4 5.6 31 58-95 66-96 (177)
309 TIGR02143 trmA_only tRNA (urac 26.9 2.4E+02 0.0052 26.5 7.1 85 8-96 199-312 (353)
310 TIGR03601 B_an_ocin probable h 26.7 42 0.0009 24.3 1.5 6 246-251 60-65 (79)
311 TIGR00282 metallophosphoestera 26.6 1.6E+02 0.0034 26.8 5.6 28 8-35 1-28 (266)
312 cd06844 STAS Sulphate Transpor 26.4 1.7E+02 0.0036 21.7 5.0 38 75-123 57-95 (100)
313 PRK09880 L-idonate 5-dehydroge 26.1 1.7E+02 0.0036 26.8 5.9 33 59-96 235-267 (343)
314 PF14258 DUF4350: Domain of un 25.8 2.3E+02 0.005 19.5 5.6 52 40-94 18-69 (70)
315 PF02150 RNA_POL_M_15KD: RNA p 25.5 29 0.00063 21.4 0.5 8 247-254 22-29 (35)
316 PRK03767 NAD(P)H:quinone oxido 25.3 4.2E+02 0.0091 22.4 9.3 25 9-33 3-27 (200)
317 cd08234 threonine_DH_like L-th 25.2 2.3E+02 0.0049 25.4 6.5 35 57-96 224-258 (334)
318 PRK05568 flavodoxin; Provision 24.2 3.5E+02 0.0076 21.1 9.7 106 9-124 3-115 (142)
319 PF04816 DUF633: Family of unk 24.1 2.2E+02 0.0047 24.8 5.9 88 27-126 32-123 (205)
320 cd00133 PTS_IIB PTS_IIB: subun 24.1 2.4E+02 0.0052 19.2 5.8 54 10-68 2-55 (84)
321 KOG1122 tRNA and rRNA cytosine 23.8 3.6E+02 0.0077 26.6 7.6 23 75-97 351-373 (460)
322 TIGR02175 PorC_KorC 2-oxoacid: 23.7 1.4E+02 0.0031 24.9 4.5 33 56-95 63-97 (177)
323 TIGR00308 TRM1 tRNA(guanine-26 23.6 1E+02 0.0022 29.5 4.0 64 28-94 81-146 (374)
324 PF03604 DNA_RNApol_7kD: DNA d 22.9 58 0.0013 19.8 1.4 13 242-254 14-26 (32)
325 PRK10867 signal recognition pa 22.7 3.6E+02 0.0077 26.4 7.6 41 57-97 181-224 (433)
326 PF12353 eIF3g: Eukaryotic tra 22.1 51 0.0011 26.6 1.4 23 232-256 104-126 (128)
327 COG0030 KsgA Dimethyladenosine 21.3 4E+02 0.0086 24.2 7.1 66 4-70 28-106 (259)
328 cd08242 MDR_like Medium chain 21.3 2.8E+02 0.0061 24.7 6.3 33 57-94 212-244 (319)
329 PF12511 DUF3716: Protein of u 21.0 44 0.00095 23.1 0.7 17 233-249 40-57 (60)
330 COG5561 Predicted metal-bindin 20.9 41 0.00088 25.7 0.5 9 246-254 34-42 (101)
331 smart00259 ZnF_A20 A20-like zi 20.9 54 0.0012 19.0 0.9 14 247-260 3-18 (26)
332 cd08255 2-desacetyl-2-hydroxye 20.5 3.6E+02 0.0079 23.3 6.7 33 58-95 158-190 (277)
333 PF11312 DUF3115: Protein of u 20.4 42 0.0009 31.4 0.6 58 40-97 174-244 (315)
334 PRK00103 rRNA large subunit me 20.1 3.3E+02 0.0072 22.7 5.9 79 4-86 64-147 (157)
No 1
>KOG4020 consensus Protein DRE2, required for cell viability [Function unknown]
Probab=100.00 E-value=4.3e-53 Score=362.83 Aligned_cols=200 Identities=39% Similarity=0.573 Sum_probs=136.3
Q ss_pred CCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhhhcccccC
Q 023870 54 PVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVP 133 (276)
Q Consensus 54 p~~~~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~~~~~~~~ 133 (276)
.++.++||+.+... .+...-.+....+..|+|+|.+.+.+..- ... .+.....+.|+..+......-.+.
T Consensus 46 t~~~~~~e~~~~e~--a~~~~~~V~~l~~~~l~P~gtl~v~s~~g----~~~----~~l~~~~i~g~~~~~~~s~d~~s~ 115 (257)
T KOG4020|consen 46 TLENARYELLTPEA--ATLSGLKVKSLLRASLKPEGTLSVLSHIG----HAD----DLLLFVKITGEKDYCWISPDVSSA 115 (257)
T ss_pred cccccceeccchhh--ccccccchhhhhhcccCccceEehhhhcc----chh----hHHHHHHHhCCccccccCcccccc
Confidence 34577888555433 12222256666778999999999887542 111 344567888888753322111000
Q ss_pred CceeEEEEeeccCCCCcCCccccccCc--------ccccccc--CCCCCCccCccccCCccccCCCCCCCCC-CCCCCCc
Q 023870 134 AEVVSFGVKGKKPTWKIGSSFAIKKAP--------KSLAKLQ--VDDDSDLIDEDTLLTEEDLKKPQLPSVG-DCEVGST 202 (276)
Q Consensus 134 ~~~~~~~i~akKP~~~~g~~~~~~~~~--------~~~~~~~--~~~d~~lided~Ll~~~d~~~p~~~~~~-~C~~~~~ 202 (276)
+.+ |++....++..+.... ++....+ .|.++|+||||+||++||+.+|++.+.. .|++++|
T Consensus 116 ~ql--------kl~~~K~ss~~~q~a~k~~~~knl~s~sand~s~d~~~dlide~elldee~~~k~~~~~~~a~~~~~kK 187 (257)
T KOG4020|consen 116 NQL--------KLSITKKSSPSLQSASKNAAAKNLWSLSANDMSDDLRQDLIDEEELLDEEDLKKPDPASLRASCSPGKK 187 (257)
T ss_pred ccc--------cccceeccCcccccccccHHHHHhhhhhccccccchhhhccChhhccCHhhcCCCCccccccCCCCccc
Confidence 111 2222222322221111 1111122 2334799999999999999999988776 8999999
Q ss_pred ccCCCCCccchHHHHHHHHhcCCCccccCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEecCccccc
Q 023870 203 RKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFLVA 274 (276)
Q Consensus 203 ~kack~ctcG~ae~~~~~~~~~~~~~~~~~~~ssCg~C~lGDAFRC~~CPy~G~PaFkpGe~v~l~~~~l~~ 274 (276)
||||||||||+||++|.|.. ......+++|+||||||||||||+||||||||||||||+|.|+++.+..
T Consensus 188 kkaCk~CtcGl~Ee~E~Eks---~~q~s~~~~s~CGnCylGdaFrCs~CPylG~PafkPGe~v~ls~~~~~~ 256 (257)
T KOG4020|consen 188 KKACKNCTCGLAEEEEKEKS---REQISSNPKSACGNCYLGDAFRCSGCPYLGMPAFKPGEKVLLSDNSDKE 256 (257)
T ss_pred chhhhcCCcccHHHHHhhhh---hhhhccCcccccCcccccccceecCCCcCCCCCCCCCCeEEeccccccc
Confidence 99999999999999997742 2223457999999999999999999999999999999999999987653
No 2
>PF05093 CIAPIN1: Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis; InterPro: IPR007785 Anamorsin, subsequently named CIAPIN1 for cytokine-induced anti-apoptosis inhibitor 1, in humans is the homologue of yeast Dre2, a conserved soluble eukaryotic Fe-S cluster protein, that functions in cytosolic Fe-S protein biogenesis. It is found in both the cytoplasm and in the mitochondrial intermembrane space (IMS) []. CIAPIN1 is found to be up-regulated in hepatocellular cancer, is considered to be a downstream effector of the receptor tyrosine kinase-Ras signalling pathway, and is essential in mouse definitive haematopoiesis []. In addition, it has also anti-apoptotic effects in the cell. It is involved in negative control of cell death upon cytokine withdrawal and promotes development of hematopoietic cells [].
Probab=100.00 E-value=1.2e-49 Score=303.92 Aligned_cols=84 Identities=61% Similarity=1.085 Sum_probs=71.9
Q ss_pred cccCCCCCCCCCCCCCC--CcccCCCCCccchHHHHHHHHhcC---------CCccc-----cCCCCCCCCCCCCCCccc
Q 023870 184 EDLKKPQLPSVGDCEVG--STRKACKNCICGRAEAEEKVEKLG---------LTMDQ-----LKNPQSACGSCGLGDAFR 247 (276)
Q Consensus 184 ~d~~~p~~~~~~~C~~~--~~~kack~ctcG~ae~~~~~~~~~---------~~~~~-----~~~~~ssCg~C~lGDAFR 247 (276)
|||++|.+..+.+|+++ +||||||||||||||+++++.+.. ++.++ +.+++|||||||||||||
T Consensus 1 eDlkkp~~~~~~~C~~~~~kkrrACKnCTCGlaE~~e~e~~~~~~~~~~~~~~~~~~l~e~~~~~~~ssCGsC~LGDAFR 80 (100)
T PF05093_consen 1 EDLKKPDLVSPKDCGPGCKKKRRACKNCTCGLAEEEEAEKKNARAAQQKALKFTEDELTEITVEGKKSSCGSCYLGDAFR 80 (100)
T ss_pred CCcccCCCcccccccCCccccccccccCCcchHHHhcchhhhhhhhhhhhcccccchhhhhhcccccCccccccccccce
Confidence 68999998888899977 999999999999999998765321 22222 346899999999999999
Q ss_pred cCCCCCCCCCCCCCCCeEEe
Q 023870 248 CGTCPYKGLPPFKLGEKVSL 267 (276)
Q Consensus 248 C~~CPy~G~PaFkpGe~v~l 267 (276)
|+||||||||||||||+|+|
T Consensus 81 Ca~CPYlGlPaFkpGe~V~l 100 (100)
T PF05093_consen 81 CAGCPYLGLPAFKPGEKVKL 100 (100)
T ss_pred ecCCCcCCCCCCCCCCeecC
Confidence 99999999999999999987
No 3
>COG5636 Uncharacterized conserved protein, contains Zn-ribbon-like motif [Function unknown]
Probab=100.00 E-value=3.5e-44 Score=305.36 Aligned_cols=193 Identities=32% Similarity=0.461 Sum_probs=122.0
Q ss_pred CCCCceeEEEeccccccCCh--HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhhhccccc
Q 023870 55 VESFSIDTVLSISSSHELPG--DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVV 132 (276)
Q Consensus 55 ~~~~sfD~V~s~~~l~~~~~--~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~~~~~~~ 132 (276)
.+-+.||.+++..-...|.. ...|++..--|.|||.|-..--...... .+.....++|...+... .++.
T Consensus 47 ~~IN~~D~~~~~mD~~~~n~Tv~~~L~k~~tnl~~G~~L~~~~~A~~s~~-------n~~~~A~~S~~~I~~~t--~~~~ 117 (284)
T COG5636 47 EIINEPDYCWIKMDSSKLNQTVSIPLKKKKTNLQSGSKLPTFKKASSSTS-------NLPKKADHSRQPIVKET--DSFK 117 (284)
T ss_pred hhccCCceEEEEcccchhhccccchhhhhhcccCCCCcccceeccccccc-------cccchhhhcCCceeecC--cccc
Confidence 34568888887543322322 4567777778999999965443321111 23333444554433222 1122
Q ss_pred CCceeEEEEeeccCCCCcCCccccccCcc---------------c--cccccCCCCCCccCccccCCccccCCCCCCCCC
Q 023870 133 PAEVVSFGVKGKKPTWKIGSSFAIKKAPK---------------S--LAKLQVDDDSDLIDEDTLLTEEDLKKPQLPSVG 195 (276)
Q Consensus 133 ~~~~~~~~i~akKP~~~~g~~~~~~~~~~---------------~--~~~~~~~~d~~lided~Ll~~~d~~~p~~~~~~ 195 (276)
+.++ .+ .+.|.+.+.+ + ..-+..|+|+++|+||+||+|+--.+.+. ..
T Consensus 118 ~~~~------------k~-~t~P~~~~~~d~~~edk~~~~~~l~S~~q~~~~~dtd~~~i~edEllde~s~d~~i~--~~ 182 (284)
T COG5636 118 PPSF------------KM-TTEPKVYRVVDDLMEDKEELRKLLRSKAQYMMRKDTDPRTIMEDELLDEDSEDKAIQ--RS 182 (284)
T ss_pred CCCc------------cc-eecceEEeecccccccHHHHHHHHhhhhHhhhccCCChhhhhhhhhhccccccceee--cc
Confidence 1111 11 0112111110 0 00123577889999999999953222221 24
Q ss_pred CCCC--CCcccCCCCCccchHHHHHHH-------HhcCCCccccCC--------CCCCCCCCCCCCccccCCCCCCCCCC
Q 023870 196 DCEV--GSTRKACKNCICGRAEAEEKV-------EKLGLTMDQLKN--------PQSACGSCGLGDAFRCGTCPYKGLPP 258 (276)
Q Consensus 196 ~C~~--~~~~kack~ctcG~ae~~~~~-------~~~~~~~~~~~~--------~~ssCg~C~lGDAFRC~~CPy~G~Pa 258 (276)
.|.+ ++|+|||||||||++|+||.+ +.+|||+.++.+ ++|+||||||||||||+|||||||||
T Consensus 183 ec~p~~~kKKrACKdCTCGlkE~eE~E~~rt~Q~~~VK~Te~~~~e~~~~i~~K~Vs~CGnCylGDAFRCSGCPylGlPa 262 (284)
T COG5636 183 ECPPSKTKKKRACKDCTCGLKEEEENEIVRTRQDKVVKFTEDELTEIDFTIDGKKVSACGNCYLGDAFRCSGCPYLGLPA 262 (284)
T ss_pred cCCCCcchhhhhcccCCccchhhhhhhhhhhhhhhheeccccceeeeeeeeccccccccccccccccceecCCCccCCCC
Confidence 6875 589999999999999999854 357888776542 47999999999999999999999999
Q ss_pred CCCCCeEEecCcc
Q 023870 259 FKLGEKVSLSSNF 271 (276)
Q Consensus 259 FkpGe~v~l~~~~ 271 (276)
|+||+.|.+..|.
T Consensus 263 f~PGd~v~~~~nl 275 (284)
T COG5636 263 FEPGDVVSFSMNL 275 (284)
T ss_pred CCCCceeeeeccc
Confidence 9999999887653
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.53 E-value=7.1e-14 Score=124.42 Aligned_cols=97 Identities=23% Similarity=0.265 Sum_probs=83.8
Q ss_pred CCCCCcEEEEccCCCCcHH--------------HHHHHHHHHHHHhhhhCCCC-eEEEeccCCCCCCCCCceeEEEeccc
Q 023870 4 GKMQSAVLALSEDKILPVS--------------AVLNAIRDLGDEAVEQCDPQ-IITQASSLSQLPVESFSIDTVLSISS 68 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~--------------~v~~~m~~~A~~~~~~~~~~-v~~~~~d~~~lp~~~~sfD~V~s~~~ 68 (276)
+++|++||+|..|.+--+. ++.+.|++.|+++....+.. ++|+++|+++|||++++||+|++.+.
T Consensus 49 ~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fg 128 (238)
T COG2226 49 IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFG 128 (238)
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeeh
Confidence 4479999999988863321 23389999999998775544 99999999999999999999999999
Q ss_pred cccCCh-HHHHHHHHHhccCCcEEEEEecCCCC
Q 023870 69 SHELPG-DQLLEEISRVLKPGGTILIYKKLTSD 100 (276)
Q Consensus 69 l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~ 100 (276)
++++++ +.+|+|++|||||||++++.+.....
T Consensus 129 lrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 129 LRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred hhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 999999 99999999999999999999987643
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.47 E-value=1.7e-13 Score=122.01 Aligned_cols=95 Identities=20% Similarity=0.255 Sum_probs=70.9
Q ss_pred CCCCCcEEEEccCCCCcHHH---------------HHHHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEecc
Q 023870 4 GKMQSAVLALSEDKILPVSA---------------VLNAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSIS 67 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~---------------v~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~ 67 (276)
.+.|.+||++..|.+.-... +.+.|++.|+++....+. ++.++++|++++||++++||+|++.+
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 56789999999888643222 239999999998876543 69999999999999999999999999
Q ss_pred ccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870 68 SSHELPG-DQLLEEISRVLKPGGTILIYKKLT 98 (276)
Q Consensus 68 ~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~ 98 (276)
.++.+++ ..+++|++|+|||||+|++.++..
T Consensus 125 glrn~~d~~~~l~E~~RVLkPGG~l~ile~~~ 156 (233)
T PF01209_consen 125 GLRNFPDRERALREMYRVLKPGGRLVILEFSK 156 (233)
T ss_dssp -GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred hHHhhCCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence 9999998 899999999999999999999875
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.32 E-value=2.4e-11 Score=109.83 Aligned_cols=96 Identities=21% Similarity=0.188 Sum_probs=78.8
Q ss_pred CCCCCcEEEEccCCCCcHH---------------HHHHHHHHHHHHhhhh----CCCCeEEEeccCCCCCCCCCceeEEE
Q 023870 4 GKMQSAVLALSEDKILPVS---------------AVLNAIRDLGDEAVEQ----CDPQIITQASSLSQLPVESFSIDTVL 64 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~---------------~v~~~m~~~A~~~~~~----~~~~v~~~~~d~~~lp~~~~sfD~V~ 64 (276)
++.|++||+++.|.+.... ++.+.|++.|+++... ...++.+++++++++|+++++||+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 5678999999988874321 1227888888766431 22358899999999999999999999
Q ss_pred eccccccCCh-HHHHHHHHHhccCCcEEEEEecCCC
Q 023870 65 SISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTS 99 (276)
Q Consensus 65 s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~ 99 (276)
+.+++|++++ ..+++|++|+|||||+|++.++...
T Consensus 151 ~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 151 MGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred EecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence 9999999988 8999999999999999999998753
No 7
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.31 E-value=1.5e-11 Score=103.29 Aligned_cols=76 Identities=17% Similarity=0.121 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhhhhC----CCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870 23 AVLNAIRDLGDEAVEQC----DPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 23 ~v~~~m~~~A~~~~~~~----~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
++.+.|++.|+++.... ..++.++++|++++|+++++||+|++.+++|++++ ..++++++|+|||||.|++.++.
T Consensus 4 D~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 4 DFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred cCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEECC
Confidence 45678888887665322 23589999999999999999999999999999988 89999999999999999999886
Q ss_pred C
Q 023870 98 T 98 (276)
Q Consensus 98 ~ 98 (276)
.
T Consensus 84 ~ 84 (160)
T PLN02232 84 K 84 (160)
T ss_pred C
Confidence 5
No 8
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.24 E-value=2e-10 Score=103.92 Aligned_cols=123 Identities=20% Similarity=0.249 Sum_probs=92.1
Q ss_pred CCCCCCcEEEEccCCCCcHH---------------HHHHHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEec
Q 023870 3 TGKMQSAVLALSEDKILPVS---------------AVLNAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSI 66 (276)
Q Consensus 3 ~~~~g~~vL~v~~~~~~~~~---------------~v~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~ 66 (276)
.++.|++||+++.|.+..+. ++.+.|++.|+++....+. ++.+..++++.+++++++||+|++.
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEc
Confidence 36789999999988864311 1227888888887655443 5889999999999999999999999
Q ss_pred cccccCCh-HHHHHHHHHhccCCcEEEEEecCCCC-c-hhHHH-------------HHHHHHHHHHHCCCcchhh
Q 023870 67 SSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSD-K-GDVDK-------------AISALEGKLLLAGFLDAQR 125 (276)
Q Consensus 67 ~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~-~-~~~~~-------------~~~~l~~~l~laGF~~v~~ 125 (276)
.++|++++ ..++++++|+|||||+|++.++.... . ..+.. ..+.+...+..+||..+..
T Consensus 154 ~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i 228 (272)
T PRK11873 154 CVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITI 228 (272)
T ss_pred CcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEE
Confidence 99999887 88999999999999999998764321 1 01100 1235667788899987643
No 9
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.21 E-value=5.9e-11 Score=88.80 Aligned_cols=67 Identities=30% Similarity=0.440 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEE
Q 023870 25 LNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILI 93 (276)
Q Consensus 25 ~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i 93 (276)
.+.|++.++++.... .+.+.+++++.+|+++++||+|++..++||+++ ..++++++|+|||||+++|
T Consensus 28 ~~~~~~~~~~~~~~~--~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 28 SEEMLEQARKRLKNE--GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -HHHHHHHHHHTTTS--TEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHhccccc--CchheeehHHhCccccccccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 366777777765433 355999999999999999999999999999977 8999999999999999986
No 10
>PLN02244 tocopherol O-methyltransferase
Probab=99.21 E-value=1.2e-10 Score=109.10 Aligned_cols=94 Identities=18% Similarity=0.217 Sum_probs=78.8
Q ss_pred CCCCcEEEEccCCCCcHHHH-------------HHHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEecccc
Q 023870 5 KMQSAVLALSEDKILPVSAV-------------LNAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISSS 69 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~~v-------------~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~l 69 (276)
+.+.+||+|+.|.+..+..+ .+.|++.+++++...+. ++.++++|+.++|+++++||+|++..++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 67889999999987543322 27788888776655443 5899999999999999999999999999
Q ss_pred ccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870 70 HELPG-DQLLEEISRVLKPGGTILIYKKLT 98 (276)
Q Consensus 70 ~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~ 98 (276)
+|+++ ..++++++|+|||||+|++.++..
T Consensus 197 ~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 197 EHMPDKRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 99988 889999999999999999988753
No 11
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.20 E-value=2.5e-10 Score=103.32 Aligned_cols=122 Identities=15% Similarity=0.150 Sum_probs=91.4
Q ss_pred CCCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccc
Q 023870 3 TGKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSS 69 (276)
Q Consensus 3 ~~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l 69 (276)
.++++.+||.|+.|.+..+..+. +.|++.|+++... ..++.+..+|+...|+++++||+|++..++
T Consensus 49 ~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l 127 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-KNKIEFEANDILKKDFPENTFDMIYSRDAI 127 (263)
T ss_pred CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-CCceEEEECCcccCCCCCCCeEEEEEhhhH
Confidence 36789999999999876544332 6778888776543 345889999999999999999999998887
Q ss_pred ccCC--h-HHHHHHHHHhccCCcEEEEEecCCCCchh----HHH----------HHHHHHHHHHHCCCcchhh
Q 023870 70 HELP--G-DQLLEEISRVLKPGGTILIYKKLTSDKGD----VDK----------AISALEGKLLLAGFLDAQR 125 (276)
Q Consensus 70 ~~~~--~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~----~~~----------~~~~l~~~l~laGF~~v~~ 125 (276)
+|++ + ..++++++|+|||||+|++.++....... ... ....+...|..+||..+..
T Consensus 128 ~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 200 (263)
T PTZ00098 128 LHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVA 200 (263)
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeE
Confidence 7775 4 78999999999999999999875432111 111 1135566788888887654
No 12
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.15 E-value=4.3e-10 Score=100.10 Aligned_cols=95 Identities=17% Similarity=0.166 Sum_probs=77.2
Q ss_pred CCCCcEEEEccCCCCc----H----------------HHHHHHHHHHHHHhhhhC----CCCeEEEeccCCCCCCCCCce
Q 023870 5 KMQSAVLALSEDKILP----V----------------SAVLNAIRDLGDEAVEQC----DPQIITQASSLSQLPVESFSI 60 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~----~----------------~~v~~~m~~~A~~~~~~~----~~~v~~~~~d~~~lp~~~~sf 60 (276)
..|++||++..|.+-- + -++.+.|++.+++|+... ...+.|+.+|+++|||++++|
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 4578889887776411 1 123378999988877432 334899999999999999999
Q ss_pred eEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCC
Q 023870 61 DTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTS 99 (276)
Q Consensus 61 D~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~ 99 (276)
|..++.+.+..+++ +.+|+|+||||||||+|++.++.+.
T Consensus 179 D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv 218 (296)
T KOG1540|consen 179 DAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKV 218 (296)
T ss_pred eeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEcccc
Confidence 99999999988887 9999999999999999999998763
No 13
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.13 E-value=1e-09 Score=96.57 Aligned_cols=95 Identities=20% Similarity=0.255 Sum_probs=77.8
Q ss_pred CCCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEecc
Q 023870 4 GKMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSIS 67 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~ 67 (276)
++.|.+||+++.|.+..+..+. +.|++.++++....+. ++.++.++++.+++++++||+|++.+
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 122 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGF 122 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEec
Confidence 5678999999998875433222 6788888777654443 48899999999999999999999999
Q ss_pred ccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870 68 SSHELPG-DQLLEEISRVLKPGGTILIYKKLT 98 (276)
Q Consensus 68 ~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~ 98 (276)
.+|++++ ..++++++|+|||||++++.+...
T Consensus 123 ~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 123 GLRNVPDYMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred ccccCCCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 9999887 889999999999999999887654
No 14
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.06 E-value=9.6e-10 Score=98.24 Aligned_cols=101 Identities=16% Similarity=0.134 Sum_probs=80.6
Q ss_pred CCCcEEEEccCCCCcHHH------------HHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC
Q 023870 6 MQSAVLALSEDKILPVSA------------VLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP 73 (276)
Q Consensus 6 ~g~~vL~v~~~~~~~~~~------------v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~ 73 (276)
.+.+||+++.|.+.-... +.+.|++.++++.. ...++.+|++.+|+++++||+|+++.++||++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~----~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~ 117 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA----ADHYLAGDIESLPLATATFDLAWSNLAVQWCG 117 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC----CCCEEEcCcccCcCCCCcEEEEEECchhhhcC
Confidence 467899999988643222 22778888876532 24678899999999999999999999999998
Q ss_pred h-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHH
Q 023870 74 G-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISA 110 (276)
Q Consensus 74 ~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~ 110 (276)
+ ..++.+++|+|||||.|++..+..++..++...|..
T Consensus 118 d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~ 155 (251)
T PRK10258 118 NLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQA 155 (251)
T ss_pred CHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHH
Confidence 7 899999999999999999999887766666555544
No 15
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.03 E-value=3e-09 Score=99.71 Aligned_cols=142 Identities=15% Similarity=0.125 Sum_probs=98.1
Q ss_pred CCCCcEEEEccCCCCcHHHH--------------HHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870 5 KMQSAVLALSEDKILPVSAV--------------LNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH 70 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~~v--------------~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~ 70 (276)
+.+.+||.++.|.+.-...+ .+.|++.|+++... .++.++.+|++++++++++||+|++..++|
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~--~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~ 189 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc--cCCeEEeccHHhCCCCCCceeEEEEcChhh
Confidence 46789999998886432222 26788888776432 347789999999999999999999999999
Q ss_pred cCCh-HHHHHHHHHhccCCcEEEEEecCCCC--chh-HHH------HHHHHHHHHHHCCCcchhhhhcccccCC-----c
Q 023870 71 ELPG-DQLLEEISRVLKPGGTILIYKKLTSD--KGD-VDK------AISALEGKLLLAGFLDAQRIQLKSVVPA-----E 135 (276)
Q Consensus 71 ~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~--~~~-~~~------~~~~l~~~l~laGF~~v~~~~~~~~~~~-----~ 135 (276)
++++ ..++++++|+|||||++++....... ... ... ..+++...+..+||..++.....+.... +
T Consensus 190 ~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~~~~~~~~~ 269 (340)
T PLN02490 190 YWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGPKWYRGVRRHG 269 (340)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcChhhcccccccc
Confidence 9887 88999999999999999887543211 000 000 1246677899999997654432221111 1
Q ss_pred -eeEEEEeeccCCC
Q 023870 136 -VVSFGVKGKKPTW 148 (276)
Q Consensus 136 -~~~~~i~akKP~~ 148 (276)
+-...++++||..
T Consensus 270 ~~~~~~v~~~k~~~ 283 (340)
T PLN02490 270 LIMGCSVTGVKPAS 283 (340)
T ss_pred ceeeEEEEEecccc
Confidence 1345578888764
No 16
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.01 E-value=4.9e-09 Score=102.14 Aligned_cols=121 Identities=18% Similarity=0.103 Sum_probs=90.9
Q ss_pred CCCCCcEEEEccCCCCcHHHH-------------HHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870 4 GKMQSAVLALSEDKILPVSAV-------------LNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH 70 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~v-------------~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~ 70 (276)
++.+.+||+|+.|.+..+..+ .+.|++.|+++.......+.+.++|+..+++++++||+|++..+++
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~ 343 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTIL 343 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCccc
Confidence 467889999999987542222 2778888877665445568999999999999999999999999999
Q ss_pred cCCh-HHHHHHHHHhccCCcEEEEEecCCCCc---hhHHH----------HHHHHHHHHHHCCCcchh
Q 023870 71 ELPG-DQLLEEISRVLKPGGTILIYKKLTSDK---GDVDK----------AISALEGKLLLAGFLDAQ 124 (276)
Q Consensus 71 ~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~---~~~~~----------~~~~l~~~l~laGF~~v~ 124 (276)
|+++ ..++++++|+|||||+|++.++..... ..... ..+.+...+..+||..+.
T Consensus 344 h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~ 411 (475)
T PLN02336 344 HIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVI 411 (475)
T ss_pred ccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeee
Confidence 9988 899999999999999999998754211 11111 123456677888888653
No 17
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.88 E-value=5.9e-09 Score=97.14 Aligned_cols=94 Identities=12% Similarity=0.103 Sum_probs=78.2
Q ss_pred CCCCcEEEEccCCCCcHHH------------HHHHHHHHHHHhhhhCC--CCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870 5 KMQSAVLALSEDKILPVSA------------VLNAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSISSSH 70 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~~------------v~~~m~~~A~~~~~~~~--~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~ 70 (276)
..|.+||+|+.|.+..+.. +.+.|++.|+++..... .++.+++++++++++++++||+|++..+++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 3677999999999865432 23888888887654332 358899999999998889999999999999
Q ss_pred cCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870 71 ELPG-DQLLEEISRVLKPGGTILIYKKLT 98 (276)
Q Consensus 71 ~~~~-~~~l~ei~rvLKPgG~l~i~~~~~ 98 (276)
|+.+ ..++++++|+|||||.|++.+...
T Consensus 210 Hv~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 210 HVANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred hcCCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 9988 999999999999999999998653
No 18
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.87 E-value=2.9e-08 Score=88.20 Aligned_cols=92 Identities=14% Similarity=0.174 Sum_probs=74.1
Q ss_pred CCCCCcEEEEccCCCCcHHHH----------------HHHHHHHHHHhhhhCC--CCeEEEeccCCCCCCCCCceeEEEe
Q 023870 4 GKMQSAVLALSEDKILPVSAV----------------LNAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLS 65 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~v----------------~~~m~~~A~~~~~~~~--~~v~~~~~d~~~lp~~~~sfD~V~s 65 (276)
++.+.+||+++.|.+..+..+ .+.|++.|+++....+ .++.++++++..++++ .+|+|++
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~ 128 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVIL 128 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEee
Confidence 467889999999887543211 2788999988765533 3588999999998876 4899999
Q ss_pred ccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 023870 66 ISSSHELPG---DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 66 ~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
.+++||+++ ..++++++|+|||||.|++.++.
T Consensus 129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 999999874 67999999999999999999864
No 19
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.85 E-value=3.6e-08 Score=88.34 Aligned_cols=92 Identities=15% Similarity=0.191 Sum_probs=74.9
Q ss_pred CCCCCcEEEEccCCCCcHHH----------------HHHHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEe
Q 023870 4 GKMQSAVLALSEDKILPVSA----------------VLNAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLS 65 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~----------------v~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s 65 (276)
++.+.+||+++.|.+..... ..+.|++.|+++....+. ++.++++++..+|++ .||+|++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~ 131 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVL 131 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence 56889999999988754321 228999999888765443 588999999988875 4999999
Q ss_pred ccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 023870 66 ISSSHELPG---DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 66 ~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
++++|++++ ..++++++|+|||||.|++.+..
T Consensus 132 ~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 132 NFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred hhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 999999875 57999999999999999999854
No 20
>PRK08317 hypothetical protein; Provisional
Probab=98.83 E-value=7e-08 Score=84.17 Aligned_cols=94 Identities=23% Similarity=0.266 Sum_probs=75.4
Q ss_pred CCCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccc
Q 023870 4 GKMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISS 68 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~ 68 (276)
++.+++||.++.|.+.-+..+. +.|++.++++......++.+..+++..++++.++||+|++...
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 96 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRV 96 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEech
Confidence 5678999999998875444333 3455666665333445688999999999999999999999999
Q ss_pred cccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870 69 SHELPG-DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 69 l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
++++.+ ..++++++++|||||.+++.+..
T Consensus 97 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 97 LQHLEDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred hhccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 999887 88999999999999999988753
No 21
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.83 E-value=2.1e-08 Score=87.01 Aligned_cols=86 Identities=20% Similarity=0.350 Sum_probs=66.7
Q ss_pred HHHHHHHHHhhhh-CCCCeE-EEeccCCCCC-CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCc
Q 023870 26 NAIRDLGDEAVEQ-CDPQII-TQASSLSQLP-VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDK 101 (276)
Q Consensus 26 ~~m~~~A~~~~~~-~~~~v~-~~~~d~~~lp-~~~~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~ 101 (276)
+.|.+++.+++.. ...++. |+.++.+++| +++.|||+|++.+.++...+ .+.|+++.|+|||||++++.++..+.-
T Consensus 109 ~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y 188 (252)
T KOG4300|consen 109 EKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEY 188 (252)
T ss_pred HHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccc
Confidence 5555555554433 234566 8999999999 99999999999999998888 899999999999999999999987533
Q ss_pred hhHHHHHHHH
Q 023870 102 GDVDKAISAL 111 (276)
Q Consensus 102 ~~~~~~~~~l 111 (276)
+-+...|++.
T Consensus 189 ~~~n~i~q~v 198 (252)
T KOG4300|consen 189 GFWNRILQQV 198 (252)
T ss_pred hHHHHHHHHH
Confidence 3345555443
No 22
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.80 E-value=1.5e-08 Score=90.96 Aligned_cols=94 Identities=13% Similarity=0.106 Sum_probs=76.0
Q ss_pred CCCCcEEEEccCCCCcHHHH------------HHHHHHHHHHhhhhCCC--CeEEEeccCCCCC-CCCCceeEEEecccc
Q 023870 5 KMQSAVLALSEDKILPVSAV------------LNAIRDLGDEAVEQCDP--QIITQASSLSQLP-VESFSIDTVLSISSS 69 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp-~~~~sfD~V~s~~~l 69 (276)
+.+.+||.++.|.+.-+..+ .+.|++.|+++....+. ++.++++++.+++ +.+++||+|++..++
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 45678999999987543322 28899999887766553 5789999998774 678899999999999
Q ss_pred ccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870 70 HELPG-DQLLEEISRVLKPGGTILIYKKLT 98 (276)
Q Consensus 70 ~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~ 98 (276)
||+.+ ..++++++|+|||||+|++..+..
T Consensus 123 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 123 EWVADPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred HhhCCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 99987 889999999999999999876553
No 23
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.79 E-value=3.4e-08 Score=92.07 Aligned_cols=121 Identities=20% Similarity=0.199 Sum_probs=85.4
Q ss_pred CCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhh--hCCCCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870 6 MQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVE--QCDPQIITQASSLSQLPVESFSIDTVLSISSSH 70 (276)
Q Consensus 6 ~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~--~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~ 70 (276)
.|.+||+|+.|.+.-+..|. ..|+..++.... ....++.++.++++++|+ +++||+|++..++|
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~ 200 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLY 200 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhh
Confidence 47889999999876544343 345544332211 123468899999999998 88999999999999
Q ss_pred cCCh-HHHHHHHHHhccCCcEEEEEecCCCC-----chhHHH-----------HHHHHHHHHHHCCCcchhhhh
Q 023870 71 ELPG-DQLLEEISRVLKPGGTILIYKKLTSD-----KGDVDK-----------AISALEGKLLLAGFLDAQRIQ 127 (276)
Q Consensus 71 ~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~-----~~~~~~-----------~~~~l~~~l~laGF~~v~~~~ 127 (276)
|+.+ ..++++++|+|||||.|++.++.... ..+... ....+...|..+||..++...
T Consensus 201 H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 201 HRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVD 274 (322)
T ss_pred ccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEe
Confidence 9887 88999999999999999987643110 000000 134677889999999876543
No 24
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.78 E-value=5.3e-08 Score=80.45 Aligned_cols=92 Identities=22% Similarity=0.360 Sum_probs=77.1
Q ss_pred CCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCC--CCCCceeEEEec
Q 023870 5 KMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDP-QIITQASSLSQLP--VESFSIDTVLSI 66 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp--~~~~sfD~V~s~ 66 (276)
+.+.+||+++.|.+.....+. +.|++.|++++...+. ++.+.++|+.+++ ++ +.||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 567899999999875533333 7889999887766655 4999999999988 66 899999999
Q ss_pred cccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870 67 SSSHELPG-DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 67 ~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
.++|++.+ ..+++++++.||++|.+++.+..
T Consensus 81 ~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999998 78999999999999999999876
No 25
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.73 E-value=4.1e-08 Score=88.13 Aligned_cols=87 Identities=15% Similarity=0.089 Sum_probs=70.3
Q ss_pred CCCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccc
Q 023870 4 GKMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSS 69 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l 69 (276)
.+.+.+||+++.|.+.-...+. +.|++.|+++ .+.++++|+++++ ++++||+|+++.++
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~-~~~~fD~v~~~~~l 99 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------GVDARTGDVRDWK-PKPDTDVVVSNAAL 99 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------CCcEEEcChhhCC-CCCCceEEEEehhh
Confidence 3578899999999875443332 5677776542 3678889998875 56799999999999
Q ss_pred ccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870 70 HELPG-DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 70 ~~~~~-~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
||+++ ..++++++++|||||+|++..+.
T Consensus 100 ~~~~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 100 QWVPEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred hhCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 99988 88999999999999999987654
No 26
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.71 E-value=3.9e-07 Score=79.83 Aligned_cols=93 Identities=25% Similarity=0.311 Sum_probs=73.1
Q ss_pred CCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhC--CCCeEEEeccCCCCCCCCCceeEEEecc
Q 023870 5 KMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSIS 67 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~--~~~v~~~~~d~~~lp~~~~sfD~V~s~~ 67 (276)
+.+.+||.++.|.+.-+..+. +.|++.++++.... ..++.+..+++..++++.++||+|++..
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAF 129 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEec
Confidence 457899999988865433222 46667777665432 3457889999999888888999999999
Q ss_pred ccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870 68 SSHELPG-DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 68 ~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
.+|++.+ ..++.++.++|+|||++++.+..
T Consensus 130 ~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 160 (239)
T PRK00216 130 GLRNVPDIDKALREMYRVLKPGGRLVILEFS 160 (239)
T ss_pred ccccCCCHHHHHHHHHHhccCCcEEEEEEec
Confidence 8998887 88999999999999999988754
No 27
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.71 E-value=1.7e-07 Score=81.93 Aligned_cols=93 Identities=20% Similarity=0.220 Sum_probs=73.5
Q ss_pred CCcEEEEccCCCCcHHHH--------------HHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccC
Q 023870 7 QSAVLALSEDKILPVSAV--------------LNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL 72 (276)
Q Consensus 7 g~~vL~v~~~~~~~~~~v--------------~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~ 72 (276)
+.+||.++.|.+.-...+ .+.|++.++++.. .++.++.++++.+++++++||+|++..++||+
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~ 111 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS---ENVQFICGDAEKLPLEDSSFDLIVSNLALQWC 111 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC---CCCeEEecchhhCCCCCCceeEEEEhhhhhhc
Confidence 468999988886432222 2556666665532 35788999999999999999999999999999
Q ss_pred Ch-HHHHHHHHHhccCCcEEEEEecCCCCch
Q 023870 73 PG-DQLLEEISRVLKPGGTILIYKKLTSDKG 102 (276)
Q Consensus 73 ~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~ 102 (276)
.+ ..++.+++++|||||.|++.++......
T Consensus 112 ~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~ 142 (240)
T TIGR02072 112 DDLSQALSELARVLKPGGLLAFSTFGPGTLH 142 (240)
T ss_pred cCHHHHHHHHHHHcCCCcEEEEEeCCccCHH
Confidence 77 8899999999999999999988765443
No 28
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.67 E-value=1.5e-07 Score=77.22 Aligned_cols=90 Identities=24% Similarity=0.313 Sum_probs=63.2
Q ss_pred CCCCCcEEEEccCCCCcHHHHHHHHHHHHHHhhhhCC--------CCeEEEeccCCCCCCCCCceeEEEeccccccCCh-
Q 023870 4 GKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCD--------PQIITQASSLSQLPVESFSIDTVLSISSSHELPG- 74 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~v~~~m~~~A~~~~~~~~--------~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~- 74 (276)
.+.+.+||.++.|.+.-+ ..|..... ++.... ..+.....+....++++++||+|+++.++||+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~----~~l~~~~~-~~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~ 94 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFL----RALAKRGF-EVTGVDISPQMIEKRNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDP 94 (161)
T ss_dssp TTTTSEEEEESSTTSHHH----HHHHHTTS-EEEEEESSHHHHHHTTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSHH
T ss_pred cCCCCEEEEEcCCCCHHH----HHHHHhCC-EEEEEECCHHHHhhhhhhhhhhhhhhhhccccchhhHhhHHHHhhcccH
Confidence 578999999999997433 23311100 000000 1122223333455678899999999999999998
Q ss_pred HHHHHHHHHhccCCcEEEEEecCC
Q 023870 75 DQLLEEISRVLKPGGTILIYKKLT 98 (276)
Q Consensus 75 ~~~l~ei~rvLKPgG~l~i~~~~~ 98 (276)
..+|++++++|||||++++.++..
T Consensus 95 ~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 95 EEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCC
Confidence 999999999999999999999874
No 29
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.67 E-value=1.2e-07 Score=88.08 Aligned_cols=121 Identities=17% Similarity=0.158 Sum_probs=83.2
Q ss_pred CCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhh--hCCCCeEEEeccCCCCCCCCCceeEEEecccc
Q 023870 5 KMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVE--QCDPQIITQASSLSQLPVESFSIDTVLSISSS 69 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~--~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l 69 (276)
..|.+||+|+.|.+.-...+. +.|+..++.... .....+.+...+++++|.. .+||+|+++.++
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL 198 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVL 198 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchh
Confidence 457889999998875433332 456654332111 1224577788889988864 489999999999
Q ss_pred ccCCh-HHHHHHHHHhccCCcEEEEEecCCC-Cc-------hhHHH--------HHHHHHHHHHHCCCcchhhh
Q 023870 70 HELPG-DQLLEEISRVLKPGGTILIYKKLTS-DK-------GDVDK--------AISALEGKLLLAGFLDAQRI 126 (276)
Q Consensus 70 ~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~-~~-------~~~~~--------~~~~l~~~l~laGF~~v~~~ 126 (276)
+|+++ ..+|++++|+|||||.|++.+..-. .. ....+ ....+...|..+||.+++..
T Consensus 199 ~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~ 272 (314)
T TIGR00452 199 YHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRIL 272 (314)
T ss_pred hccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEE
Confidence 99987 7899999999999999998764311 00 00110 12466778899999987644
No 30
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.66 E-value=3.3e-08 Score=87.67 Aligned_cols=93 Identities=13% Similarity=0.177 Sum_probs=81.1
Q ss_pred CCCcEEEEccCCCCcHH------------HHHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC
Q 023870 6 MQSAVLALSEDKILPVS------------AVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP 73 (276)
Q Consensus 6 ~g~~vL~v~~~~~~~~~------------~v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~ 73 (276)
.|.+||+|+.|.+.-++ ++.+.+++.|+.++...+..+.|.+..++++....++||+|+|.-+++|++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~ 138 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP 138 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence 68899999888875433 445899999998888888888899999999887778999999999999999
Q ss_pred h-HHHHHHHHHhccCCcEEEEEecCC
Q 023870 74 G-DQLLEEISRVLKPGGTILIYKKLT 98 (276)
Q Consensus 74 ~-~~~l~ei~rvLKPgG~l~i~~~~~ 98 (276)
+ +.+++.+.+.+||||.+++++...
T Consensus 139 dp~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 139 DPESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred CHHHHHHHHHHHcCCCcEEEEecccc
Confidence 8 889999999999999999998763
No 31
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.65 E-value=1.8e-07 Score=80.90 Aligned_cols=90 Identities=14% Similarity=0.070 Sum_probs=70.9
Q ss_pred CCCcEEEEccCCCCcHHHH------------HHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC
Q 023870 6 MQSAVLALSEDKILPVSAV------------LNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP 73 (276)
Q Consensus 6 ~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~ 73 (276)
.+.+||.++.|.+..+..+ .+.|++.+++++...+..+.+...++...+++ ++||+|+++.++|+++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~ 108 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFLQ 108 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEecccccCC
Confidence 4568999999987653322 27888888777766666677888888777765 5799999999999886
Q ss_pred h---HHHHHHHHHhccCCcEEEEEec
Q 023870 74 G---DQLLEEISRVLKPGGTILIYKK 96 (276)
Q Consensus 74 ~---~~~l~ei~rvLKPgG~l~i~~~ 96 (276)
. ..++++++|+|||||++++.++
T Consensus 109 ~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 109 AGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 3 7899999999999999777654
No 32
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.65 E-value=2e-07 Score=81.62 Aligned_cols=117 Identities=15% Similarity=0.143 Sum_probs=82.0
Q ss_pred cEEEEccCCCCcHHHH--------------HHHHHHHHHHhhhhCC--CCeEEEeccCCCCCCCCCceeEEEeccccccC
Q 023870 9 AVLALSEDKILPVSAV--------------LNAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSISSSHEL 72 (276)
Q Consensus 9 ~vL~v~~~~~~~~~~v--------------~~~m~~~A~~~~~~~~--~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~ 72 (276)
+||.|+.|.+..+..+ .+.|++.++++....+ .++.+...|+...|++ ++||+|++..++||+
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~ 80 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHI 80 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHhC
Confidence 5778877766543322 2566677777765544 3478888998776765 489999999999999
Q ss_pred Ch-HHHHHHHHHhccCCcEEEEEecCCCCchh-----HH---HHHHHHHHHHHHCCCcchhhh
Q 023870 73 PG-DQLLEEISRVLKPGGTILIYKKLTSDKGD-----VD---KAISALEGKLLLAGFLDAQRI 126 (276)
Q Consensus 73 ~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~-----~~---~~~~~l~~~l~laGF~~v~~~ 126 (276)
.+ ..++++++++|||||++++.++....... .. -....+...+..+||..++..
T Consensus 81 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 81 KDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 87 89999999999999999998864311000 00 012355667888999876544
No 33
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.62 E-value=2.9e-07 Score=79.78 Aligned_cols=90 Identities=19% Similarity=0.100 Sum_probs=70.4
Q ss_pred CCCCcEEEEccCCCCcHHHH------------HHHHHHHHHHhhhhCCCC-eEEEeccCCCCCCCCCceeEEEecccccc
Q 023870 5 KMQSAVLALSEDKILPVSAV------------LNAIRDLGDEAVEQCDPQ-IITQASSLSQLPVESFSIDTVLSISSSHE 71 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~~~~~~~-v~~~~~d~~~lp~~~~sfD~V~s~~~l~~ 71 (276)
..+.+||.++.|.+..+..+ .+.|++.+++++...+.. +.+..+|+.+++++ .+||+|+++.++|+
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 107 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMF 107 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhh
Confidence 35678999999987654322 277888888776665544 78888999888775 57999999999988
Q ss_pred CCh---HHHHHHHHHhccCCcEEEEEe
Q 023870 72 LPG---DQLLEEISRVLKPGGTILIYK 95 (276)
Q Consensus 72 ~~~---~~~l~ei~rvLKPgG~l~i~~ 95 (276)
++. ..++++++|+|||||++++..
T Consensus 108 ~~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 108 LEAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 763 789999999999999975543
No 34
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.60 E-value=1.6e-06 Score=75.06 Aligned_cols=92 Identities=22% Similarity=0.230 Sum_probs=72.0
Q ss_pred CCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccc
Q 023870 5 KMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSS 69 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l 69 (276)
..+.+||.++.|.+.-...+. +.+++.++++.. ...++.++.+++.+++++.+.||+|++...+
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEALPFEDNSFDAVTIAFGL 116 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence 367889999888765433222 456666655543 3345788899999998888899999999999
Q ss_pred ccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870 70 HELPG-DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 70 ~~~~~-~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
|+..+ ..++++++++|+|||++++.+..
T Consensus 117 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 117 RNVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred CCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 98887 88999999999999999988754
No 35
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.60 E-value=4.4e-07 Score=70.36 Aligned_cols=89 Identities=22% Similarity=0.227 Sum_probs=67.2
Q ss_pred CCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhh--hCCCCeEEEeccC-CCCCCCCCceeEEEecc-
Q 023870 6 MQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVE--QCDPQIITQASSL-SQLPVESFSIDTVLSIS- 67 (276)
Q Consensus 6 ~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~--~~~~~v~~~~~d~-~~lp~~~~sfD~V~s~~- 67 (276)
+|.+||+++.|.+.-...+. +.|++.|+++.. ....++.++++|+ ....+ .+.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence 57899999999875533222 789999988873 3456799999999 33333 44699999988
Q ss_pred ccccCC---h-HHHHHHHHHhccCCcEEEEEe
Q 023870 68 SSHELP---G-DQLLEEISRVLKPGGTILIYK 95 (276)
Q Consensus 68 ~l~~~~---~-~~~l~ei~rvLKPgG~l~i~~ 95 (276)
.++++. . ..+++++++.|+|||+|++.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 555333 2 789999999999999999875
No 36
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.59 E-value=1.3e-06 Score=75.48 Aligned_cols=107 Identities=17% Similarity=0.112 Sum_probs=80.2
Q ss_pred CCCCCCcEEEEccCCCCcHHHH--------------HHHHHHHHHHhhhhCCCC-eEEEeccCCCCCCCCCceeEEEecc
Q 023870 3 TGKMQSAVLALSEDKILPVSAV--------------LNAIRDLGDEAVEQCDPQ-IITQASSLSQLPVESFSIDTVLSIS 67 (276)
Q Consensus 3 ~~~~g~~vL~v~~~~~~~~~~v--------------~~~m~~~A~~~~~~~~~~-v~~~~~d~~~lp~~~~sfD~V~s~~ 67 (276)
.++.|.+||+++.|.+..+..+ .+.|++.|++++...+.. ++++.+++++++. .++||+|++..
T Consensus 42 ~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 42 YLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA 120 (187)
T ss_pred hcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc
Confidence 4567899999999988643322 278888888877766653 8999999998887 77999999864
Q ss_pred ccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcc
Q 023870 68 SSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD 122 (276)
Q Consensus 68 ~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~ 122 (276)
+.+ +.++++++++|||||+|++..... .. ..+......+|..-
T Consensus 121 ----~~~~~~~l~~~~~~LkpGG~lv~~~~~~-----~~---~~l~~~~~~~~~~~ 164 (187)
T PRK00107 121 ----VASLSDLVELCLPLLKPGGRFLALKGRD-----PE---EEIAELPKALGGKV 164 (187)
T ss_pred ----ccCHHHHHHHHHHhcCCCeEEEEEeCCC-----hH---HHHHHHHHhcCceE
Confidence 233 789999999999999999987542 11 13444566668763
No 37
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.57 E-value=9.5e-07 Score=81.41 Aligned_cols=92 Identities=14% Similarity=0.084 Sum_probs=71.6
Q ss_pred CCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEeccc
Q 023870 4 GKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISS 68 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~ 68 (276)
++.+++||+|+.|.+.-+..+. +.|++.+++++...+. +++++.+|+...+++. +|+|+....
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~ 224 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRI 224 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhh
Confidence 4677899999988875433232 5678888777766553 4889999998766653 699998888
Q ss_pred cccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 023870 69 SHELPG---DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 69 l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
+|++.+ ..++++++++|||||+|++.+..
T Consensus 225 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 256 (306)
T TIGR02716 225 LYSANEQLSTIMCKKAFDAMRSGGRLLILDMV 256 (306)
T ss_pred hhcCChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 888865 46999999999999999999863
No 38
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.55 E-value=4e-07 Score=81.56 Aligned_cols=89 Identities=15% Similarity=0.176 Sum_probs=70.7
Q ss_pred CCCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccc
Q 023870 4 GKMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSS 69 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l 69 (276)
++.+.+||.++.|.+.-...+. +.|++.|+++. .++.++.+|+..+. +..+||+|+++.++
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----~~~~~~~~d~~~~~-~~~~fD~v~~~~~l 103 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----PDCQFVEADIASWQ-PPQALDLIFANASL 103 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC----CCCeEEECchhccC-CCCCccEEEEccCh
Confidence 4678899999998875432222 67788777663 34778889998765 45699999999999
Q ss_pred ccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870 70 HELPG-DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 70 ~~~~~-~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
||+++ ..++++++++|||||+|++..+.
T Consensus 104 ~~~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 104 QWLPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred hhCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 99988 88999999999999999987543
No 39
>PRK05785 hypothetical protein; Provisional
Probab=98.54 E-value=8.5e-07 Score=78.60 Aligned_cols=77 Identities=19% Similarity=0.170 Sum_probs=62.9
Q ss_pred CCCCcEEEEccCCCCcHHHH-------------HHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870 5 KMQSAVLALSEDKILPVSAV-------------LNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE 71 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~~v-------------~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~ 71 (276)
..+.+||+++.|.+.....+ .+.|++.|+++. .+++++++++|+++++||+|++.+++|+
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~-------~~~~~d~~~lp~~d~sfD~v~~~~~l~~ 122 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD-------DKVVGSFEALPFRDKSFDVVMSSFALHA 122 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc-------ceEEechhhCCCCCCCEEEEEecChhhc
Confidence 35789999999987543222 277888776541 3578999999999999999999999999
Q ss_pred CCh-HHHHHHHHHhccCC
Q 023870 72 LPG-DQLLEEISRVLKPG 88 (276)
Q Consensus 72 ~~~-~~~l~ei~rvLKPg 88 (276)
+++ +.+++|++|+|||.
T Consensus 123 ~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 123 SDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred cCCHHHHHHHHHHHhcCc
Confidence 988 89999999999994
No 40
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.53 E-value=5.6e-07 Score=82.37 Aligned_cols=89 Identities=17% Similarity=0.101 Sum_probs=72.0
Q ss_pred CCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh
Q 023870 7 QSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG 74 (276)
Q Consensus 7 g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~ 74 (276)
+.+||+++.|.+..+.-+. +.|++.+++++...+.++.+...|+...++ +++||+|++..++|+++.
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~ 199 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNR 199 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCCH
Confidence 4499999999987643332 788888888777777788888888887766 678999999999998863
Q ss_pred ---HHHHHHHHHhccCCcEEEEEec
Q 023870 75 ---DQLLEEISRVLKPGGTILIYKK 96 (276)
Q Consensus 75 ---~~~l~ei~rvLKPgG~l~i~~~ 96 (276)
..++++++|+|+|||++++..+
T Consensus 200 ~~~~~~l~~~~~~LkpgG~~l~v~~ 224 (287)
T PRK12335 200 ERIPAIIKNMQEHTNPGGYNLIVCA 224 (287)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 7899999999999999776543
No 41
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.52 E-value=7.6e-08 Score=74.05 Aligned_cols=67 Identities=25% Similarity=0.434 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEec-cccccCCh---HHHHHHHHHhccCCc
Q 023870 23 AVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSI-SSSHELPG---DQLLEEISRVLKPGG 89 (276)
Q Consensus 23 ~v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~-~~l~~~~~---~~~l~ei~rvLKPgG 89 (276)
++.+.|++.++++....+.++.++++|+.++++.+++||+|++. .+++|+.+ ..++++++++|||||
T Consensus 31 D~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 31 DISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp ES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 34578888888887766778999999999999999999999995 44888875 789999999999998
No 42
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.51 E-value=5.9e-07 Score=81.96 Aligned_cols=92 Identities=18% Similarity=0.232 Sum_probs=67.7
Q ss_pred CCCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCC--eEEEeccCCCCCCCCCceeEEEecc
Q 023870 3 TGKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQ--IITQASSLSQLPVESFSIDTVLSIS 67 (276)
Q Consensus 3 ~~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~--v~~~~~d~~~lp~~~~sfD~V~s~~ 67 (276)
.+++|++||+|+.|-+..+..+. +...+.+++++...++. +.+...|..+++. +||.|+|+-
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~ 135 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIE 135 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEES
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEEEe
Confidence 47899999999999876644333 55677788877777653 8888888877654 999999999
Q ss_pred ccccCC--h-HHHHHHHHHhccCCcEEEEEecC
Q 023870 68 SSHELP--G-DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 68 ~l~~~~--~-~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
++.|+. + +.++++++|+|||||++++....
T Consensus 136 ~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 136 MFEHVGRKNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp EGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred chhhcChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 999885 3 89999999999999999988764
No 43
>PRK06922 hypothetical protein; Provisional
Probab=98.47 E-value=6.1e-07 Score=89.95 Aligned_cols=92 Identities=21% Similarity=0.212 Sum_probs=73.8
Q ss_pred CCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCCCeEEEeccCCCCC--CCCCceeEEEecccc
Q 023870 6 MQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDPQIITQASSLSQLP--VESFSIDTVLSISSS 69 (276)
Q Consensus 6 ~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp--~~~~sfD~V~s~~~l 69 (276)
.|.+||+++.|.+..+..+. +.|++.|+++....+.++.++++|+.++| +++++||+|+++..+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 57899999999875433222 57888888776555566788889998888 889999999999888
Q ss_pred ccCC-------------h-HHHHHHHHHhccCCcEEEEEecC
Q 023870 70 HELP-------------G-DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 70 ~~~~-------------~-~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
|++. + ..++++++|+|||||++++.+..
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 8652 2 68999999999999999999853
No 44
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.43 E-value=2.3e-06 Score=74.44 Aligned_cols=111 Identities=14% Similarity=0.019 Sum_probs=79.8
Q ss_pred CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCC-CCeEEEeccC-CCCC--CCCCceeEEEec
Q 023870 5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCD-PQIITQASSL-SQLP--VESFSIDTVLSI 66 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~-~~v~~~~~d~-~~lp--~~~~sfD~V~s~ 66 (276)
+.+..||.++.|.+.....+. +.|++.|+++....+ .++.++++++ +.++ +++++||+|+++
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 357789999888875433222 667888877665544 3588999999 7777 788899999997
Q ss_pred cccccCC---------hHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcc
Q 023870 67 SSSHELP---------GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD 122 (276)
Q Consensus 67 ~~l~~~~---------~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~ 122 (276)
+...|.. ...++++++++|||||.|++..... .....+...+..+||..
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~-------~~~~~~~~~~~~~g~~~ 176 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE-------GYAEYMLEVLSAEGGFL 176 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH-------HHHHHHHHHHHhCcccc
Confidence 6554432 2679999999999999999987542 11224556677788754
No 45
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.42 E-value=3.6e-06 Score=72.18 Aligned_cols=110 Identities=17% Similarity=0.142 Sum_probs=76.8
Q ss_pred CCcEEEEccCCCCcHHH--------------HHHHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870 7 QSAVLALSEDKILPVSA--------------VLNAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSISSSHE 71 (276)
Q Consensus 7 g~~vL~v~~~~~~~~~~--------------v~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~ 71 (276)
|.+||+++.|.+..+.. ..+.|++++++++...+. ++.++++++++++ ..++||+|++.. +++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~~ 120 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LAS 120 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-hhC
Confidence 88999999988754221 126777777776655554 4899999999875 367999999865 332
Q ss_pred CChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhh
Q 023870 72 LPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125 (276)
Q Consensus 72 ~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~ 125 (276)
+ ..+++.++++|||||++++..... ...+ +..+...+...||..+..
T Consensus 121 ~--~~~~~~~~~~LkpgG~lvi~~~~~-~~~~----~~~~~e~~~~~~~~~~~~ 167 (181)
T TIGR00138 121 L--NVLLELTLNLLKVGGYFLAYKGKK-YLDE----IEEAKRKCQVLGVEPLEV 167 (181)
T ss_pred H--HHHHHHHHHhcCCCCEEEEEcCCC-cHHH----HHHHHHhhhhcCceEeec
Confidence 2 578899999999999999885432 1111 224445677788876543
No 46
>PRK04266 fibrillarin; Provisional
Probab=98.41 E-value=5.3e-06 Score=73.65 Aligned_cols=121 Identities=19% Similarity=0.123 Sum_probs=76.5
Q ss_pred CCCCCCcEEEEccCCCCc---HHHH-----------HHHHHHHHHHhhhhCCCCeEEEeccCCCC----CCCCCceeEEE
Q 023870 3 TGKMQSAVLALSEDKILP---VSAV-----------LNAIRDLGDEAVEQCDPQIITQASSLSQL----PVESFSIDTVL 64 (276)
Q Consensus 3 ~~~~g~~vL~v~~~~~~~---~~~v-----------~~~m~~~A~~~~~~~~~~v~~~~~d~~~l----p~~~~sfD~V~ 64 (276)
.+++|++||.++.|.+.- +... .+.|++.+.+++... .++.++.+|+... ++. ++||+|+
T Consensus 69 ~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~~D~i~ 146 (226)
T PRK04266 69 PIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-KNIIPILADARKPERYAHVV-EKVDVIY 146 (226)
T ss_pred CCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-CCcEEEECCCCCcchhhhcc-ccCCEEE
Confidence 357899999999887642 1111 266666554443322 4578888888652 233 5699999
Q ss_pred eccccccCChHHHHHHHHHhccCCcEEEEE------ecCCCCchhHHHHHHHHHHHHHHCCCcchhhhhccc
Q 023870 65 SISSSHELPGDQLLEEISRVLKPGGTILIY------KKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKS 130 (276)
Q Consensus 65 s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~------~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~~~~~ 130 (276)
+.....+ ....++++++|+|||||+|++. ++... .....+.....+..+||..++.....+
T Consensus 147 ~d~~~p~-~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~----~~~~~~~~~~~l~~aGF~~i~~~~l~p 213 (226)
T PRK04266 147 QDVAQPN-QAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKD----PKEIFKEEIRKLEEGGFEILEVVDLEP 213 (226)
T ss_pred ECCCChh-HHHHHHHHHHHhcCCCcEEEEEEecccccCcCC----HHHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 6533111 1145789999999999999993 33321 112223455789999999877665443
No 47
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.41 E-value=1.2e-06 Score=79.46 Aligned_cols=89 Identities=21% Similarity=0.295 Sum_probs=66.4
Q ss_pred CCCcEEEEccCCCCcHHH-----------------HHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccc
Q 023870 6 MQSAVLALSEDKILPVSA-----------------VLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISS 68 (276)
Q Consensus 6 ~g~~vL~v~~~~~~~~~~-----------------v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~ 68 (276)
.+.+||.++.|.+.-... +.+.|++.|+++. .++.+.++++.++|+++++||+|++++.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----~~~~~~~~d~~~lp~~~~sfD~I~~~~~ 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----PQVTFCVASSHRLPFADQSLDAIIRIYA 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----CCCeEEEeecccCCCcCCceeEEEEecC
Confidence 346789998887643222 2255777765542 4578899999999999999999998764
Q ss_pred cccCChHHHHHHHHHhccCCcEEEEEecCCCCchhH
Q 023870 69 SHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDV 104 (276)
Q Consensus 69 l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~ 104 (276)
. ..+++++|+|||||+|++..+...++.++
T Consensus 161 ~------~~~~e~~rvLkpgG~li~~~p~~~~l~el 190 (272)
T PRK11088 161 P------CKAEELARVVKPGGIVITVTPGPRHLFEL 190 (272)
T ss_pred C------CCHHHHHhhccCCCEEEEEeCCCcchHHH
Confidence 2 34689999999999999998876554443
No 48
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.36 E-value=6.2e-06 Score=70.02 Aligned_cols=109 Identities=17% Similarity=0.131 Sum_probs=77.7
Q ss_pred CCCcEEEEccCCCCcHHH------------HHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC
Q 023870 6 MQSAVLALSEDKILPVSA------------VLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP 73 (276)
Q Consensus 6 ~g~~vL~v~~~~~~~~~~------------v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~ 73 (276)
.+.+||.++.|.+.-+.. +.+.|++.++++....+..+.++.+|+...+ ..+||+|+++..+++.+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCCc
Confidence 456789998887643222 2278888888877666667888888886644 45999999987765443
Q ss_pred h----------------------HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcch
Q 023870 74 G----------------------DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA 123 (276)
Q Consensus 74 ~----------------------~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v 123 (276)
+ ..++++++|+|||||++++........ ..+...+...||...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~-------~~~~~~l~~~gf~~~ 161 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGE-------PDTFDKLDERGFRYE 161 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCCh-------HHHHHHHHhCCCeEE
Confidence 2 357999999999999999987653211 144566788898743
No 49
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.33 E-value=4.1e-07 Score=80.24 Aligned_cols=81 Identities=12% Similarity=0.018 Sum_probs=66.9
Q ss_pred HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCchhH
Q 023870 26 NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDKGDV 104 (276)
Q Consensus 26 ~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~ 104 (276)
--|++.++. ++..+..+++.++|.+.|+|.+++||+|+++.++||..+ +..+.++..+|||.|.|+-+.++..+++++
T Consensus 105 ~~M~~s~~~-~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyEL 183 (325)
T KOG2940|consen 105 YDMIKSCRD-AQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYEL 183 (325)
T ss_pred hHHHHHhhc-cCCCceEEEEEecchhcccccccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHHhccccHHHH
Confidence 456655533 223344577889999999999999999999999999998 999999999999999999999888788777
Q ss_pred HHH
Q 023870 105 DKA 107 (276)
Q Consensus 105 ~~~ 107 (276)
+.+
T Consensus 184 R~s 186 (325)
T KOG2940|consen 184 RCS 186 (325)
T ss_pred HHH
Confidence 653
No 50
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.33 E-value=6.7e-07 Score=79.02 Aligned_cols=125 Identities=17% Similarity=0.172 Sum_probs=78.9
Q ss_pred CCCCCCcEEEEccCCCCcH-HHHH------------HHHHHHHHHhh--hh-CCCCeEEEeccCCCC--CCCCCceeEEE
Q 023870 3 TGKMQSAVLALSEDKILPV-SAVL------------NAIRDLGDEAV--EQ-CDPQIITQASSLSQL--PVESFSIDTVL 64 (276)
Q Consensus 3 ~~~~g~~vL~v~~~~~~~~-~~v~------------~~m~~~A~~~~--~~-~~~~v~~~~~d~~~l--p~~~~sfD~V~ 64 (276)
+++.|.+||+.-.|-+-.+ +.+. +..+++|.-+- .. ....+..+.+|+.++ .|++++||+|+
T Consensus 131 ~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 131 KVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred ccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 4677999999988876332 1111 11112221100 00 112367788888655 58999999998
Q ss_pred ec---ccc-ccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhhh
Q 023870 65 SI---SSS-HELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQ 127 (276)
Q Consensus 65 s~---~~l-~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~~ 127 (276)
-- +++ -++...++..|++|+|||||+++.....++....-......+-+.|...||..+....
T Consensus 211 HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~ 277 (287)
T COG2521 211 HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVR 277 (287)
T ss_pred eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeeh
Confidence 62 211 2344589999999999999999999887764321111223566789999999876554
No 51
>PLN03075 nicotianamine synthase; Provisional
Probab=98.32 E-value=3.6e-06 Score=77.47 Aligned_cols=88 Identities=11% Similarity=0.262 Sum_probs=67.9
Q ss_pred CCCcEEEEccCCCCcHHH-----------------HHHHHHHHHHHhhhh-CC--CCeEEEeccCCCCCCCCCceeEEEe
Q 023870 6 MQSAVLALSEDKILPVSA-----------------VLNAIRDLGDEAVEQ-CD--PQIITQASSLSQLPVESFSIDTVLS 65 (276)
Q Consensus 6 ~g~~vL~v~~~~~~~~~~-----------------v~~~m~~~A~~~~~~-~~--~~v~~~~~d~~~lp~~~~sfD~V~s 65 (276)
...+|+.|+.|.. |... +.+.|.+.|++.+.. .+ ..+.|.++|+.+++-....||+|++
T Consensus 123 ~p~~VldIGcGpg-pltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPL-PLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCc-HHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 6788999999954 2111 126778888887643 33 3599999999876434578999999
Q ss_pred ccccccCC--h-HHHHHHHHHhccCCcEEEEEe
Q 023870 66 ISSSHELP--G-DQLLEEISRVLKPGGTILIYK 95 (276)
Q Consensus 66 ~~~l~~~~--~-~~~l~ei~rvLKPgG~l~i~~ 95 (276)
. ++|++. + .+++.++++.|+|||.|++..
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9 777773 4 899999999999999999987
No 52
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.32 E-value=4.5e-06 Score=81.40 Aligned_cols=119 Identities=15% Similarity=0.105 Sum_probs=83.2
Q ss_pred CCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCC--CCCCCCCceeEEEecccccc
Q 023870 6 MQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLS--QLPVESFSIDTVLSISSSHE 71 (276)
Q Consensus 6 ~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~--~lp~~~~sfD~V~s~~~l~~ 71 (276)
.+.+||.++.|.+.....+. +.|++.+++.. ....++.++++++. .+++++++||+|++..++||
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~-~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~ 115 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESIN-GHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMY 115 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHh-ccCCceEEEEecccccccCCCCCCEEEEehhhhHHh
Confidence 46789999999875433222 66776654422 22345888899986 56888899999999999999
Q ss_pred CCh---HHHHHHHHHhccCCcEEEEEecCCCCchh--------HHHHHHHHHHHHHHCCCcchhh
Q 023870 72 LPG---DQLLEEISRVLKPGGTILIYKKLTSDKGD--------VDKAISALEGKLLLAGFLDAQR 125 (276)
Q Consensus 72 ~~~---~~~l~ei~rvLKPgG~l~i~~~~~~~~~~--------~~~~~~~l~~~l~laGF~~v~~ 125 (276)
+++ ..++++++|+|||||+|++.+.......+ .-.....+.+.+..+||.....
T Consensus 116 l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 180 (475)
T PLN02336 116 LSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDG 180 (475)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCC
Confidence 986 67999999999999999998754321100 0011234556688888886543
No 53
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.28 E-value=8.8e-06 Score=71.01 Aligned_cols=92 Identities=16% Similarity=0.220 Sum_probs=71.7
Q ss_pred CCCcEEEEccCCCCcHHHH------------HHHHHHHHHHhhhhCCC-CeEEEeccCCCCCCC-CCceeEEEecccccc
Q 023870 6 MQSAVLALSEDKILPVSAV------------LNAIRDLGDEAVEQCDP-QIITQASSLSQLPVE-SFSIDTVLSISSSHE 71 (276)
Q Consensus 6 ~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~-~~sfD~V~s~~~l~~ 71 (276)
.+.+||.++.|.+.-...+ .+.|++.++++....+. ++.+..+++..++.. .++||+|++...+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~ 124 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH 124 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence 4788999998876533322 15677777776655555 578888888877654 378999999998998
Q ss_pred CCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870 72 LPG-DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 72 ~~~-~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
+.+ ..+++++.++|+|||.+++..+.
T Consensus 125 ~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 125 VPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 887 88999999999999999988764
No 54
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.27 E-value=1.2e-05 Score=70.85 Aligned_cols=93 Identities=12% Similarity=0.165 Sum_probs=71.4
Q ss_pred CCCCcEEEEccCCCCcHHHH------------HHHHHHHHHHhhhhCCCCeEEEeccCCCCC-CCCCceeEEEecccccc
Q 023870 5 KMQSAVLALSEDKILPVSAV------------LNAIRDLGDEAVEQCDPQIITQASSLSQLP-VESFSIDTVLSISSSHE 71 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp-~~~~sfD~V~s~~~l~~ 71 (276)
..+.+||.++.|.+.....+ .+.+++.++++....+..+.+...++..++ ...+.||+|++...+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 46788999998876443323 256667777666555556778888887765 34579999999988888
Q ss_pred CCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870 72 LPG-DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 72 ~~~-~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
+++ ..+++.+.++|+|||++++..+.
T Consensus 127 ~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 127 VPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 877 88999999999999999998764
No 55
>PRK14967 putative methyltransferase; Provisional
Probab=98.26 E-value=2.8e-05 Score=68.42 Aligned_cols=93 Identities=18% Similarity=0.152 Sum_probs=65.3
Q ss_pred CCCCCcEEEEccCCCCcHHH-------------HHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870 4 GKMQSAVLALSEDKILPVSA-------------VLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH 70 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~-------------v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~ 70 (276)
++.|++||.++.|.+.-+.. +.+.|++.+++++...+.++.++.+|+.. .+++++||+|+++..++
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCC
Confidence 46788999998887532211 22677787777766656667888888865 35678999999975432
Q ss_pred cCC----------------------hHHHHHHHHHhccCCcEEEEEecC
Q 023870 71 ELP----------------------GDQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 71 ~~~----------------------~~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
... -..++++++++|||||+|++....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 110 035778899999999999986543
No 56
>PTZ00146 fibrillarin; Provisional
Probab=98.26 E-value=2.5e-05 Score=71.80 Aligned_cols=121 Identities=17% Similarity=0.175 Sum_probs=76.0
Q ss_pred CCCCCcEEEEccCCCCc---HHHHH------------H----HHHHHHHHhhhhCCCCeEEEeccCCC---CCCCCCcee
Q 023870 4 GKMQSAVLALSEDKILP---VSAVL------------N----AIRDLGDEAVEQCDPQIITQASSLSQ---LPVESFSID 61 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~---~~~v~------------~----~m~~~A~~~~~~~~~~v~~~~~d~~~---lp~~~~sfD 61 (276)
+++|++||++..+...- +.+++ + .|+++++++ .+|.++++|+.. +.+..++||
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-----~NI~~I~~Da~~p~~y~~~~~~vD 204 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-----PNIVPIIEDARYPQKYRMLVPMVD 204 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-----CCCEEEECCccChhhhhcccCCCC
Confidence 68899999998887653 22222 2 244444433 457888888853 222346899
Q ss_pred EEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCc--hhHHHHHHHHHHHHHHCCCcchhhhhcccc
Q 023870 62 TVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDK--GDVDKAISALEGKLLLAGFLDAQRIQLKSV 131 (276)
Q Consensus 62 ~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~--~~~~~~~~~l~~~l~laGF~~v~~~~~~~~ 131 (276)
+|++..+. ... ..++.+++++|||||+|+|........ .+....+++-...|..+||..++.....|.
T Consensus 205 vV~~Dva~--pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py 275 (293)
T PTZ00146 205 VIFADVAQ--PDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPF 275 (293)
T ss_pred EEEEeCCC--cchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCc
Confidence 99987642 222 567778999999999999943222111 122232333236789999998777655443
No 57
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.25 E-value=9.1e-06 Score=70.16 Aligned_cols=92 Identities=15% Similarity=0.075 Sum_probs=67.8
Q ss_pred CCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCC---CCCCceeEEEecc
Q 023870 6 MQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDP-QIITQASSLSQLP---VESFSIDTVLSIS 67 (276)
Q Consensus 6 ~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp---~~~~sfD~V~s~~ 67 (276)
.+..+|.|+.|.+.-+..+. ..|++.|++++...+. ++.++++|+..++ +++++||.|++++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 45678888888865433222 6677777776655544 5899999997654 5667999999987
Q ss_pred ccccCCh---------HHHHHHHHHhccCCcEEEEEecC
Q 023870 68 SSHELPG---------DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 68 ~l~~~~~---------~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
..+|... ..++++++|+|||||.|++.+..
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 6555321 57999999999999999988744
No 58
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.24 E-value=5.4e-06 Score=79.10 Aligned_cols=89 Identities=17% Similarity=0.117 Sum_probs=70.1
Q ss_pred CCCCCcEEEEccCCCCcHHHH-------------HHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870 4 GKMQSAVLALSEDKILPVSAV-------------LNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH 70 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~v-------------~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~ 70 (276)
+++|++||+|+.|.+..+..+ .+.|++.|++++. +..+.+...+...+ +++||+|+++..++
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l~v~~~~~D~~~l---~~~fD~Ivs~~~~e 239 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GLPVEIRLQDYRDL---NGQFDRIVSVGMFE 239 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cCeEEEEECchhhc---CCCCCEEEEeCchh
Confidence 578999999998876543322 2778888887763 34577777887665 46899999998888
Q ss_pred cCCh---HHHHHHHHHhccCCcEEEEEecC
Q 023870 71 ELPG---DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 71 ~~~~---~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
|+.. ..++++++|+|||||++++....
T Consensus 240 hvg~~~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 240 HVGPKNYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred hCChHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 8853 68999999999999999998754
No 59
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.21 E-value=1.4e-06 Score=78.94 Aligned_cols=54 Identities=17% Similarity=0.213 Sum_probs=49.0
Q ss_pred CeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEe
Q 023870 42 QIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYK 95 (276)
Q Consensus 42 ~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~ 95 (276)
.|.|.++|+.+.+++.++||+|++.++++|+++ ..++++++++|+|||+|++..
T Consensus 186 ~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 186 RVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred cCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 478999999998888899999999999999974 579999999999999999865
No 60
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.20 E-value=1.2e-06 Score=66.73 Aligned_cols=66 Identities=23% Similarity=0.309 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhhhCCC-CeEEEeccCCCCC--CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEE
Q 023870 26 NAIRDLGDEAVEQCDP-QIITQASSLSQLP--VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTI 91 (276)
Q Consensus 26 ~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp--~~~~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l 91 (276)
+.|++.++++...... ..........+.. ...++||+|+++.++||+++ ..+++.++++|||||+|
T Consensus 30 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 30 PSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp SSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred HHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 4566666666655442 3333333333322 12369999999999999987 99999999999999986
No 61
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.19 E-value=1.4e-05 Score=69.24 Aligned_cols=93 Identities=19% Similarity=0.140 Sum_probs=67.4
Q ss_pred CCCCCCcEEEEccCCCCcHH------------HHHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870 3 TGKMQSAVLALSEDKILPVS------------AVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH 70 (276)
Q Consensus 3 ~~~~g~~vL~v~~~~~~~~~------------~v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~ 70 (276)
.++ +.++|+++.|.+.++- +..+..++.+++.+...++.|.+.+.|+++..++ ..||+|++..+++
T Consensus 28 ~~~-~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~ 105 (192)
T PF03848_consen 28 LLK-PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFM 105 (192)
T ss_dssp TS--SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGG
T ss_pred hcC-CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEec
Confidence 344 4589999999987632 1115555656666666778899999999988885 6899999988888
Q ss_pred cCCh---HHHHHHHHHhccCCcEEEEEecC
Q 023870 71 ELPG---DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 71 ~~~~---~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
+++. +.+++.+...++|||++++....
T Consensus 106 fL~~~~~~~i~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 106 FLQRELRPQIIENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp GS-GGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred cCCHHHHHHHHHHHHhhcCCcEEEEEEEec
Confidence 8875 67899999999999999886553
No 62
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.11 E-value=3.5e-05 Score=65.84 Aligned_cols=111 Identities=12% Similarity=0.077 Sum_probs=77.0
Q ss_pred CCCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEeccc
Q 023870 4 GKMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSISS 68 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~~ 68 (276)
+..+.+||.++.|.+.....+. +.|++.+++++...+. ++.++.+++. .++ ..+||+|++...
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~~ 106 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADAIFIGGS 106 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCEEEECCC
Confidence 4678899999999875432221 6778888776655443 4788888774 344 358999998754
Q ss_pred cccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhh
Q 023870 69 SHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125 (276)
Q Consensus 69 l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~ 125 (276)
.+++ ..++.+++++|+|||+|++...... . ...+...+..+||..++.
T Consensus 107 ~~~~--~~~l~~~~~~Lk~gG~lv~~~~~~~---~----~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 107 GGNL--TAIIDWSLAHLHPGGRLVLTFILLE---N----LHSALAHLEKCGVSELDC 154 (187)
T ss_pred ccCH--HHHHHHHHHhcCCCeEEEEEEecHh---h----HHHHHHHHHHCCCCcceE
Confidence 3322 5688999999999999998764321 1 125556788899976653
No 63
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.10 E-value=2e-05 Score=68.80 Aligned_cols=89 Identities=18% Similarity=0.146 Sum_probs=69.3
Q ss_pred CCCCCCcEEEEccCCCCcHHHH--------------HHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccc
Q 023870 3 TGKMQSAVLALSEDKILPVSAV--------------LNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISS 68 (276)
Q Consensus 3 ~~~~g~~vL~v~~~~~~~~~~v--------------~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~ 68 (276)
.++.+..||.++.|.+..+..+ .+.|++.|+++. ..+.+.++++.+ |+++++||+|++..+
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~----~~~~~~~~d~~~-~~~~~sfD~V~~~~v 114 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL----PNINIIQGSLFD-PFKDNFFDLVLTKGV 114 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC----CCCcEEEeeccC-CCCCCCEEEEEECCh
Confidence 3567889999999998654333 267888887653 346677888888 899999999999999
Q ss_pred cccCCh---HHHHHHHHHhccCCcEEEEEecCC
Q 023870 69 SHELPG---DQLLEEISRVLKPGGTILIYKKLT 98 (276)
Q Consensus 69 l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~~ 98 (276)
++|+++ ..++++++|++ ++++++.++..
T Consensus 115 L~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 115 LIHINPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred hhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 988864 78999999998 57888887643
No 64
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.07 E-value=2.4e-05 Score=68.09 Aligned_cols=87 Identities=11% Similarity=0.190 Sum_probs=65.6
Q ss_pred CCCCCcEEEEccCCCCcHHH---------------HHHHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEec
Q 023870 4 GKMQSAVLALSEDKILPVSA---------------VLNAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSI 66 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~---------------v~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~ 66 (276)
++.|++||.++.|.+..... +.+.|.+.|++++...+. ++.++.+|+........+||+|++.
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 149 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVT 149 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEc
Confidence 46789999999988754221 227788888877766554 3788999998755456799999998
Q ss_pred cccccCChHHHHHHHHHhccCCcEEEEEe
Q 023870 67 SSSHELPGDQLLEEISRVLKPGGTILIYK 95 (276)
Q Consensus 67 ~~l~~~~~~~~l~ei~rvLKPgG~l~i~~ 95 (276)
.+.++++ .++++.|+|||+|++..
T Consensus 150 ~~~~~~~-----~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 150 AAASTIP-----SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCcchhh-----HHHHHhcCcCcEEEEEE
Confidence 8776554 57889999999998765
No 65
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.07 E-value=3e-05 Score=60.66 Aligned_cols=90 Identities=18% Similarity=0.158 Sum_probs=63.7
Q ss_pred CCCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCC-CeEEEeccCCC-CCCCCCceeEEEecc
Q 023870 4 GKMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDP-QIITQASSLSQ-LPVESFSIDTVLSIS 67 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~-lp~~~~sfD~V~s~~ 67 (276)
+..+.+||.++.|.+..+..+. +.|.+.+++++...+. ++.++.+++.. ++....+||+|++..
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGG 96 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECC
Confidence 3467889999998875533222 6667777766554433 47777787764 344456899999876
Q ss_pred ccccCChHHHHHHHHHhccCCcEEEEEe
Q 023870 68 SSHELPGDQLLEEISRVLKPGGTILIYK 95 (276)
Q Consensus 68 ~l~~~~~~~~l~ei~rvLKPgG~l~i~~ 95 (276)
..+.. .+++++++|.|||||+|++..
T Consensus 97 ~~~~~--~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 97 SGGLL--QEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred cchhH--HHHHHHHHHHcCCCCEEEEEe
Confidence 44322 589999999999999999764
No 66
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.02 E-value=3.6e-05 Score=71.81 Aligned_cols=112 Identities=19% Similarity=0.072 Sum_probs=80.4
Q ss_pred CCCCCCcEEEEccCCCCcH-H-----------HHHHHHHHHHHHhhhhCCCC-eEEEeccCCCCCCCCCceeEEEecccc
Q 023870 3 TGKMQSAVLALSEDKILPV-S-----------AVLNAIRDLGDEAVEQCDPQ-IITQASSLSQLPVESFSIDTVLSISSS 69 (276)
Q Consensus 3 ~~~~g~~vL~v~~~~~~~~-~-----------~v~~~m~~~A~~~~~~~~~~-v~~~~~d~~~lp~~~~sfD~V~s~~~l 69 (276)
.++.|..||+...|.+.-+ . ++.+.|++.++.++...+.. +.+..+|+.++|+++++||+|++...+
T Consensus 179 ~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 179 RVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPY 258 (329)
T ss_pred CCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCC
Confidence 3577888999988876431 1 22277888887776655543 678899999999988999999996432
Q ss_pred c--------cCCh--HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhh
Q 023870 70 H--------ELPG--DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125 (276)
Q Consensus 70 ~--------~~~~--~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~ 125 (276)
. .... ..++++++|+|||||++++..+... .+...+..+|| .++.
T Consensus 259 g~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~----------~~~~~~~~~g~-i~~~ 313 (329)
T TIGR01177 259 GRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI----------DLESLAEDAFR-VVKR 313 (329)
T ss_pred cCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC----------CHHHHHhhcCc-chhe
Confidence 1 1112 6799999999999999998876531 23345888999 4443
No 67
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.02 E-value=1.3e-05 Score=71.90 Aligned_cols=77 Identities=25% Similarity=0.312 Sum_probs=61.1
Q ss_pred EEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcch
Q 023870 44 ITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA 123 (276)
Q Consensus 44 ~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v 123 (276)
.++.+|+.++|++++|.|+++...++....-..++.|++|+|||||.++|.+...... +.+ .+.+.+..-||-..
T Consensus 213 ~V~~cDm~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~-dv~----~f~r~l~~lGF~~~ 287 (325)
T KOG3045|consen 213 RVIACDMRNVPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKSRFS-DVK----GFVRALTKLGFDVK 287 (325)
T ss_pred ceeeccccCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhhhcc-cHH----HHHHHHHHcCCeee
Confidence 3567899999999999999998877665544889999999999999999999764311 222 46778999999865
Q ss_pred hh
Q 023870 124 QR 125 (276)
Q Consensus 124 ~~ 125 (276)
+.
T Consensus 288 ~~ 289 (325)
T KOG3045|consen 288 HK 289 (325)
T ss_pred eh
Confidence 44
No 68
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.01 E-value=3.8e-05 Score=67.33 Aligned_cols=87 Identities=11% Similarity=0.109 Sum_probs=66.4
Q ss_pred CCCCCcEEEEccCCCCcHHH---------------HHHHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEecc
Q 023870 4 GKMQSAVLALSEDKILPVSA---------------VLNAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSIS 67 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~---------------v~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~ 67 (276)
++.|++||.++.|.+..... +.+.|.+.|+++....+. ++.++.+|+.....+...||+|++..
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~ 153 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA 153 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECC
Confidence 57899999999997754221 227788888887766554 48999999887666678999999877
Q ss_pred ccccCChHHHHHHHHHhccCCcEEEEEe
Q 023870 68 SSHELPGDQLLEEISRVLKPGGTILIYK 95 (276)
Q Consensus 68 ~l~~~~~~~~l~ei~rvLKPgG~l~i~~ 95 (276)
..+++ ...+++.|||||+|++..
T Consensus 154 ~~~~~-----~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 154 AGPDI-----PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred Ccccc-----hHHHHHhhCCCcEEEEEE
Confidence 65544 356788999999998764
No 69
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.00 E-value=1e-05 Score=70.72 Aligned_cols=76 Identities=25% Similarity=0.313 Sum_probs=52.4
Q ss_pred EEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchh
Q 023870 45 TQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ 124 (276)
Q Consensus 45 ~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~ 124 (276)
+..+|+.++|++++++|+++...++....-..++.|.+|+|||||.|.|.+...... .. +.....+..-||....
T Consensus 108 Vtacdia~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~-~~----~~F~~~~~~~GF~~~~ 182 (219)
T PF05148_consen 108 VTACDIANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRFE-NV----KQFIKALKKLGFKLKS 182 (219)
T ss_dssp EEES-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S--H----HHHHHHHHCTTEEEEE
T ss_pred EEEecCccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccCc-CH----HHHHHHHHHCCCeEEe
Confidence 466999999999999999998887766544899999999999999999999864311 12 2555668888998655
Q ss_pred h
Q 023870 125 R 125 (276)
Q Consensus 125 ~ 125 (276)
.
T Consensus 183 ~ 183 (219)
T PF05148_consen 183 K 183 (219)
T ss_dssp E
T ss_pred c
Confidence 3
No 70
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.99 E-value=3e-05 Score=70.86 Aligned_cols=93 Identities=12% Similarity=0.137 Sum_probs=73.3
Q ss_pred CCCCCCcEEEEccCCCCcHHH-------------HHHHHHHHHHHhhhhCCCC--eEEEeccCCCCCCCCCceeEEEecc
Q 023870 3 TGKMQSAVLALSEDKILPVSA-------------VLNAIRDLGDEAVEQCDPQ--IITQASSLSQLPVESFSIDTVLSIS 67 (276)
Q Consensus 3 ~~~~g~~vL~v~~~~~~~~~~-------------v~~~m~~~A~~~~~~~~~~--v~~~~~d~~~lp~~~~sfD~V~s~~ 67 (276)
.+++|++||.|+.|-+.-+.- +.+.+.+.+++++...+.. +++...|..++. +.||.|+|+-
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvg 145 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVG 145 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeehh
Confidence 479999999999988654221 2277888888888777765 677666666653 4499999999
Q ss_pred ccccCCh---HHHHHHHHHhccCCcEEEEEecCC
Q 023870 68 SSHELPG---DQLLEEISRVLKPGGTILIYKKLT 98 (276)
Q Consensus 68 ~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~~ 98 (276)
+++|+.. +.+++.++++|+|||++++.....
T Consensus 146 mfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~ 179 (283)
T COG2230 146 MFEHVGKENYDDFFKKVYALLKPGGRMLLHSITG 179 (283)
T ss_pred hHHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence 9988864 899999999999999998887653
No 71
>PRK06202 hypothetical protein; Provisional
Probab=97.97 E-value=3.5e-05 Score=68.04 Aligned_cols=90 Identities=12% Similarity=0.024 Sum_probs=67.3
Q ss_pred CCCCcEEEEccCCCCcHHH------------------HHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEec
Q 023870 5 KMQSAVLALSEDKILPVSA------------------VLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSI 66 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~~------------------v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~ 66 (276)
+.+.+||+++.|.+.-... +.+.|++.|+++.... ++.+...+...+++++++||+|+++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP--GVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC--CCeEEEEecccccccCCCccEEEEC
Confidence 4567899999988743211 1378888887764332 3566667777788888899999999
Q ss_pred cccccCCh---HHHHHHHHHhccCCcEEEEEecCC
Q 023870 67 SSSHELPG---DQLLEEISRVLKPGGTILIYKKLT 98 (276)
Q Consensus 67 ~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~~ 98 (276)
.++||+++ ..++++++|+++ |.+++.+...
T Consensus 137 ~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~ 169 (232)
T PRK06202 137 HFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIR 169 (232)
T ss_pred CeeecCChHHHHHHHHHHHHhcC--eeEEEecccc
Confidence 99999987 469999999998 6677776653
No 72
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.95 E-value=4.1e-05 Score=67.04 Aligned_cols=94 Identities=16% Similarity=0.040 Sum_probs=63.4
Q ss_pred CCCCCCcEEEEccCCCCcHHHHHHHHHHHHHHhhh-------hCCCCeEEEeccCCCCC--------CCCCceeEEEecc
Q 023870 3 TGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVE-------QCDPQIITQASSLSQLP--------VESFSIDTVLSIS 67 (276)
Q Consensus 3 ~~~~g~~vL~v~~~~~~~~~~v~~~m~~~A~~~~~-------~~~~~v~~~~~d~~~lp--------~~~~sfD~V~s~~ 67 (276)
.++.|+.||+++.|.+.-...+.+.+-. ...+- ..-.++.++++|+.+.+ +...+||+|++..
T Consensus 48 ~~~~~~~VLDlG~GtG~~t~~l~~~~~~--~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~ 125 (209)
T PRK11188 48 LFKPGMTVVDLGAAPGGWSQYAVTQIGD--KGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDM 125 (209)
T ss_pred cCCCCCEEEEEcccCCHHHHHHHHHcCC--CceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCC
Confidence 3688999999999986422112111100 00000 01124788999998853 6788999999987
Q ss_pred ccccCCh------------HHHHHHHHHhccCCcEEEEEecCC
Q 023870 68 SSHELPG------------DQLLEEISRVLKPGGTILIYKKLT 98 (276)
Q Consensus 68 ~l~~~~~------------~~~l~ei~rvLKPgG~l~i~~~~~ 98 (276)
+.++..+ ..+|++++++|||||.|++..+..
T Consensus 126 ~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 126 APNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred CCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 6665432 358999999999999999988764
No 73
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.95 E-value=1.4e-05 Score=71.84 Aligned_cols=89 Identities=15% Similarity=0.201 Sum_probs=67.3
Q ss_pred CCcEEEEccCCCCcHH------------HHHHHHHHHHHHhhhhC---CC----CeEEEeccCCCCCCCCCceeEEEecc
Q 023870 7 QSAVLALSEDKILPVS------------AVLNAIRDLGDEAVEQC---DP----QIITQASSLSQLPVESFSIDTVLSIS 67 (276)
Q Consensus 7 g~~vL~v~~~~~~~~~------------~v~~~m~~~A~~~~~~~---~~----~v~~~~~d~~~lp~~~~sfD~V~s~~ 67 (276)
|+++|+|+.|.++-++ ++++.|++.|+++.... +. ++++...+++.+. ..||+|+++.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeHH
Confidence 5778888888765422 55699999998874321 22 2445556666653 3499999999
Q ss_pred ccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870 68 SSHELPG-DQLLEEISRVLKPGGTILIYKKLT 98 (276)
Q Consensus 68 ~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~ 98 (276)
+++|+.+ ++++..+.+.|||||.+++++...
T Consensus 167 vleHV~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 167 VLEHVKDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HHHHHhCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 9999987 999999999999999999998653
No 74
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.92 E-value=5.9e-05 Score=69.41 Aligned_cols=85 Identities=22% Similarity=0.356 Sum_probs=63.4
Q ss_pred eEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC-CC----c---hh---HHH----
Q 023870 43 IITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT-SD----K---GD---VDK---- 106 (276)
Q Consensus 43 v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~-~~----~---~~---~~~---- 106 (276)
+.++-..++++|. .+.||+|++..+++|..+ -..|.++...|+|||.+++.+..- +. + .. .+.
T Consensus 167 ~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~Fi 245 (315)
T PF08003_consen 167 VFELPLGVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFI 245 (315)
T ss_pred EEEcCcchhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEe
Confidence 3333356888887 789999999999988876 889999999999999999877531 10 0 00 011
Q ss_pred -HHHHHHHHHHHCCCcchhhhhc
Q 023870 107 -AISALEGKLLLAGFLDAQRIQL 128 (276)
Q Consensus 107 -~~~~l~~~l~laGF~~v~~~~~ 128 (276)
+...|...|..+||.+++....
T Consensus 246 Ps~~~L~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 246 PSVAALKNWLERAGFKDVRCVDV 268 (315)
T ss_pred CCHHHHHHHHHHcCCceEEEecC
Confidence 1357888999999999887653
No 75
>PRK14968 putative methyltransferase; Provisional
Probab=97.92 E-value=0.00016 Score=60.99 Aligned_cols=112 Identities=20% Similarity=0.199 Sum_probs=74.5
Q ss_pred CCCCcEEEEccCCCCcHHHH------------HHHHHHHHHHhhhhCCCC---eEEEeccCCCCCCCCCceeEEEecccc
Q 023870 5 KMQSAVLALSEDKILPVSAV------------LNAIRDLGDEAVEQCDPQ---IITQASSLSQLPVESFSIDTVLSISSS 69 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~~~~~~~---v~~~~~d~~~lp~~~~sfD~V~s~~~l 69 (276)
..|.++|.++.|.+.-+..+ .+.|.+.+++++...+.. +.++.+|+.+ ++...+||+|+++..+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPY 100 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCc
Confidence 56778999988887543322 267777777766544433 7788888765 4556689999986543
Q ss_pred ccC---------------------Ch-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchh
Q 023870 70 HEL---------------------PG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ 124 (276)
Q Consensus 70 ~~~---------------------~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~ 124 (276)
... .. ..+++++.++|||||.+++...... .. ..+...+..+||....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~---~~----~~l~~~~~~~g~~~~~ 170 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT---GE----DEVLEYLEKLGFEAEV 170 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC---CH----HHHHHHHHHCCCeeee
Confidence 220 01 4579999999999999988765421 11 1455677888997543
No 76
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.90 E-value=0.00015 Score=62.61 Aligned_cols=110 Identities=13% Similarity=0.116 Sum_probs=74.6
Q ss_pred CCCCCcEEEEccCCCCcHH---------------HHHHHHHHHHHHhhhhCC--CCeEEEeccCCCC-CCCCCceeEEEe
Q 023870 4 GKMQSAVLALSEDKILPVS---------------AVLNAIRDLGDEAVEQCD--PQIITQASSLSQL-PVESFSIDTVLS 65 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~---------------~v~~~m~~~A~~~~~~~~--~~v~~~~~d~~~l-p~~~~sfD~V~s 65 (276)
+.+|..||+++.|.+.-+. ++.+.|++.+++++...+ .++.++.+++.+. +.....||.|++
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 5678899999888863211 112778888887766555 3578888888653 333468999998
Q ss_pred ccccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchh
Q 023870 66 ISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ 124 (276)
Q Consensus 66 ~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~ 124 (276)
... ... ..++.++.++|||||++++.... ... .+.+...|...|| +.+
T Consensus 118 ~~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~---~~~----~~~~~~~l~~~g~-~~~ 166 (198)
T PRK00377 118 GGG---SEKLKEIISASWEIIKKGGRIVIDAIL---LET----VNNALSALENIGF-NLE 166 (198)
T ss_pred CCC---cccHHHHHHHHHHHcCCCcEEEEEeec---HHH----HHHHHHHHHHcCC-CeE
Confidence 542 223 67899999999999999874432 111 2355566788999 443
No 77
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.88 E-value=0.00021 Score=63.17 Aligned_cols=110 Identities=19% Similarity=0.209 Sum_probs=75.5
Q ss_pred CCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCCC-eEEEeccCCCCCCCCCceeEEEecccccc
Q 023870 7 QSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDPQ-IITQASSLSQLPVESFSIDTVLSISSSHE 71 (276)
Q Consensus 7 g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~~-v~~~~~d~~~lp~~~~sfD~V~s~~~l~~ 71 (276)
+.+||.++.|.+.....+. +.|++.+++++...+.. +.++.+++.. +++.++||+|+++..++.
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCc
Confidence 4578999888875432222 67777777776655544 8889999876 567789999998643321
Q ss_pred ------CCh---------------------HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchh
Q 023870 72 ------LPG---------------------DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ 124 (276)
Q Consensus 72 ------~~~---------------------~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~ 124 (276)
+.. ..++.++.++|+|||.+++..... . .+.+...+..+||..+.
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~-----~---~~~~~~~l~~~gf~~v~ 238 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYD-----Q---GEAVRALFEAAGFADVE 238 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECcc-----H---HHHHHHHHHhCCCCceE
Confidence 110 257889999999999999865321 1 12556678889998765
Q ss_pred h
Q 023870 125 R 125 (276)
Q Consensus 125 ~ 125 (276)
.
T Consensus 239 ~ 239 (251)
T TIGR03534 239 T 239 (251)
T ss_pred E
Confidence 4
No 78
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.88 E-value=0.00012 Score=64.33 Aligned_cols=93 Identities=14% Similarity=0.055 Sum_probs=66.7
Q ss_pred CCCCcEEEEccCCCCcHHH------------HHHHHHHHHHHhhh-------------hCCCCeEEEeccCCCCCCC-CC
Q 023870 5 KMQSAVLALSEDKILPVSA------------VLNAIRDLGDEAVE-------------QCDPQIITQASSLSQLPVE-SF 58 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~~------------v~~~m~~~A~~~~~-------------~~~~~v~~~~~d~~~lp~~-~~ 58 (276)
+.|.+||+++.|.+..+.- +++.+++.+.+... ..+..|.+.++|+.+++.. ..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 5678999999999866432 22555665422110 0234588999999888743 45
Q ss_pred ceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 023870 59 SIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 59 sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
.||.|+-...+|+++. ...++.+.++|||||++++....
T Consensus 113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred CcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 7999999888888875 66999999999999987666543
No 79
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.86 E-value=1.2e-05 Score=70.58 Aligned_cols=68 Identities=18% Similarity=0.262 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870 26 NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT 98 (276)
Q Consensus 26 ~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~ 98 (276)
+.|++.|+.+. ++++|..+|+.++. ++..+|+++++.++||+++ ..+|..+...|.|||.|.++.+..
T Consensus 64 ~~Mla~Aa~rl----p~~~f~~aDl~~w~-p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 64 PAMLAKAAQRL----PDATFEEADLRTWK-PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred HHHHHHHHHhC----CCCceecccHhhcC-CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence 88999887763 67899999999885 5778999999999999999 999999999999999999998763
No 80
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.83 E-value=0.00012 Score=64.15 Aligned_cols=87 Identities=13% Similarity=0.133 Sum_probs=64.9
Q ss_pred CCCCCcEEEEccCCCCcHHHH---------------HHHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEecc
Q 023870 4 GKMQSAVLALSEDKILPVSAV---------------LNAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSIS 67 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~v---------------~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~ 67 (276)
++.|.+||.++.|.+..+..+ .+.|.+.|++++...+. ++.++.+|+.........||+|++..
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~ 154 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTA 154 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcC
Confidence 578899999999977542211 26778888887766654 48899999876554557899999876
Q ss_pred ccccCChHHHHHHHHHhccCCcEEEEEe
Q 023870 68 SSHELPGDQLLEEISRVLKPGGTILIYK 95 (276)
Q Consensus 68 ~l~~~~~~~~l~ei~rvLKPgG~l~i~~ 95 (276)
...++ ...+++.|||||+|++..
T Consensus 155 ~~~~~-----~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 155 AGPKI-----PEALIDQLKEGGILVMPV 177 (215)
T ss_pred Ccccc-----cHHHHHhcCcCcEEEEEE
Confidence 55443 456889999999998764
No 81
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.83 E-value=0.00015 Score=65.05 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=70.3
Q ss_pred CCCCCcEEEEccCCCCcHH-------------HHHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870 4 GKMQSAVLALSEDKILPVS-------------AVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH 70 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~-------------~v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~ 70 (276)
+..|.+||+++.|.+.-+. ++.+.|++.|+++....+..... .++..+.+||+|+++...+
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~------~~~~~~~~fD~Vvani~~~ 190 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNV------YLPQGDLKADVIVANILAN 190 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceE------EEccCCCCcCEEEEcCcHH
Confidence 4678999999998864321 11177888887776555442111 1122222799999875322
Q ss_pred cCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhh
Q 023870 71 ELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI 126 (276)
Q Consensus 71 ~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~ 126 (276)
.+ ..++.+++++|||||+|+++..... ....+...+...||..+...
T Consensus 191 ~~--~~l~~~~~~~LkpgG~lilsgi~~~-------~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 191 PL--LELAPDLARLLKPGGRLILSGILEE-------QADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred HH--HHHHHHHHHhcCCCcEEEEEECcHh-------hHHHHHHHHHHCCCEEEEEE
Confidence 11 5788999999999999999875521 12256667888999865543
No 82
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.81 E-value=0.00012 Score=63.97 Aligned_cols=87 Identities=13% Similarity=0.080 Sum_probs=67.7
Q ss_pred CCCCcEEEEccCCCCcHHHH------------HHHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870 5 KMQSAVLALSEDKILPVSAV------------LNAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISSSH 70 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~l~ 70 (276)
..+.+||+++.|.+.-...+ .+.|++.|+++....+. ++.+.++++.+++ ++||+|++...++
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~ 130 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLI 130 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHH
Confidence 45889999999887543322 27889988887765543 5889999998876 7899999988887
Q ss_pred cCCh---HHHHHHHHHhccCCcEEEEE
Q 023870 71 ELPG---DQLLEEISRVLKPGGTILIY 94 (276)
Q Consensus 71 ~~~~---~~~l~ei~rvLKPgG~l~i~ 94 (276)
+++. ..+++++++++++++.+.+.
T Consensus 131 ~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 131 HYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 7764 67899999999987776654
No 83
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.77 E-value=0.00013 Score=63.36 Aligned_cols=72 Identities=13% Similarity=0.144 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh----HHHHHHHHHhccCCcEEEEEecC
Q 023870 24 VLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG----DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 24 v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~----~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
+.+..+++|++|.... .+|.|+++++... .|.+.||+|+.+-+++++.+ ..++..+...|+|||.|++..+.
T Consensus 73 is~~Al~~Ar~Rl~~~-~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 73 ISPRALARARERLAGL-PHVEWIQADVPEF-WPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp S-HHHHHHHHHHTTT--SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred CCHHHHHHHHHhcCCC-CCeEEEECcCCCC-CCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 4467788888887643 5699999999764 57899999999999999864 56889999999999999999875
No 84
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.77 E-value=0.00022 Score=62.30 Aligned_cols=85 Identities=11% Similarity=0.043 Sum_probs=62.3
Q ss_pred CCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870 5 KMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISSSH 70 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~l~ 70 (276)
..+.+||.|+.|.+.-...+. +.|++.|+++....+. ++.+..+++ +..+++||+|++..++|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL---ESLLGRFDTVVCLDVLI 138 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc---hhccCCcCEEEEcchhh
Confidence 567899999999875443332 7888888887665544 588888874 44468899999999988
Q ss_pred cCCh---HHHHHHHHHhccCCcEEE
Q 023870 71 ELPG---DQLLEEISRVLKPGGTIL 92 (276)
Q Consensus 71 ~~~~---~~~l~ei~rvLKPgG~l~ 92 (276)
|+++ ..+++++.+.+++++.+.
T Consensus 139 ~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 139 HYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred cCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 7764 568888888776554443
No 85
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.77 E-value=6.7e-05 Score=66.77 Aligned_cols=73 Identities=16% Similarity=0.240 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhhhh--CCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCc-EEEEEecC
Q 023870 25 LNAIRDLGDEAVEQ--CDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGG-TILIYKKL 97 (276)
Q Consensus 25 ~~~m~~~A~~~~~~--~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG-~l~i~~~~ 97 (276)
.+.|+++|++.-.. .+........++..|--.++|.|+|++...+||+..++++++++|+||+.| .+.++...
T Consensus 64 s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 64 SEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred CHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 38899988765221 122222222233333334999999999999999998999999999998866 77777655
No 86
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.75 E-value=0.00019 Score=63.28 Aligned_cols=107 Identities=18% Similarity=0.159 Sum_probs=76.0
Q ss_pred CCcEEEEccCCCCcHH------------HHHHHHHHHHHHhhhhCCCCeEEEeccC-CCCCCCCCceeEEEeccccccCC
Q 023870 7 QSAVLALSEDKILPVS------------AVLNAIRDLGDEAVEQCDPQIITQASSL-SQLPVESFSIDTVLSISSSHELP 73 (276)
Q Consensus 7 g~~vL~v~~~~~~~~~------------~v~~~m~~~A~~~~~~~~~~v~~~~~d~-~~lp~~~~sfD~V~s~~~l~~~~ 73 (276)
..-+|+|+.|.++... ++.+.|++.|.++--+ + .++.+|+ +-+||..++||.|+++.+++|+=
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~e-g---dlil~DMG~GlpfrpGtFDg~ISISAvQWLc 126 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELE-G---DLILCDMGEGLPFRPGTFDGVISISAVQWLC 126 (270)
T ss_pred CcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhh-c---CeeeeecCCCCCCCCCccceEEEeeeeeeec
Confidence 3456777777765533 4559999998764211 1 3455666 68899999999999998887741
Q ss_pred -------h-----HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcc
Q 023870 74 -------G-----DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD 122 (276)
Q Consensus 74 -------~-----~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~ 122 (276)
+ ..++..++.+|++|++.+++-...+ ....+-+.+..+.+||--
T Consensus 127 nA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen-----~~q~d~i~~~a~~aGF~G 182 (270)
T KOG1541|consen 127 NADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPEN-----EAQIDMIMQQAMKAGFGG 182 (270)
T ss_pred ccCccccChHHHHHHHhhhhhhhhccCceeEEEecccc-----hHHHHHHHHHHHhhccCC
Confidence 1 3468889999999999998875432 222335667788999973
No 87
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.74 E-value=0.00018 Score=68.60 Aligned_cols=92 Identities=15% Similarity=0.116 Sum_probs=68.6
Q ss_pred CCCcEEEEccCCCCcHHHH--------------HHHHHHHHHHhhhhCCC-CeEEEeccCCCC--CCCCCceeEEEeccc
Q 023870 6 MQSAVLALSEDKILPVSAV--------------LNAIRDLGDEAVEQCDP-QIITQASSLSQL--PVESFSIDTVLSISS 68 (276)
Q Consensus 6 ~g~~vL~v~~~~~~~~~~v--------------~~~m~~~A~~~~~~~~~-~v~~~~~d~~~l--p~~~~sfD~V~s~~~ 68 (276)
.+..+|.|+.|.+.-+..+ ...|++.+.+++...+. ++.++++|+..+ .+++++||.|++++.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 3567899988886442222 25677777776666554 488999998754 578999999999876
Q ss_pred cccCCh-------HHHHHHHHHhccCCcEEEEEecC
Q 023870 69 SHELPG-------DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 69 l~~~~~-------~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
..|... ..++.+++|+|||||.+.+.+-.
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 655322 57999999999999999998744
No 88
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.70 E-value=0.00012 Score=57.10 Aligned_cols=90 Identities=18% Similarity=0.218 Sum_probs=63.5
Q ss_pred CCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCC--CCCCceeEEEecccc
Q 023870 7 QSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDP--QIITQASSLSQLP--VESFSIDTVLSISSS 69 (276)
Q Consensus 7 g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp--~~~~sfD~V~s~~~l 69 (276)
|.+||.+..|.+.-+..+. +...+.++.+....+. ++.++++|+..+. +++++||+|+++-.+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 5677888777764322222 5566777777665543 5899999998775 889999999997655
Q ss_pred ccCC--------h-HHHHHHHHHhccCCcEEEEEec
Q 023870 70 HELP--------G-DQLLEEISRVLKPGGTILIYKK 96 (276)
Q Consensus 70 ~~~~--------~-~~~l~ei~rvLKPgG~l~i~~~ 96 (276)
.... . ..+++++.++|||||.+++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 4321 2 6789999999999999998764
No 89
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=97.67 E-value=0.00021 Score=65.52 Aligned_cols=90 Identities=14% Similarity=0.121 Sum_probs=63.0
Q ss_pred CCCCCcEEEEccCCCCcHHHH-------------HHHHHHHHHHhhhhCCCC--eEEEeccCCCCCCCCCceeEEEeccc
Q 023870 4 GKMQSAVLALSEDKILPVSAV-------------LNAIRDLGDEAVEQCDPQ--IITQASSLSQLPVESFSIDTVLSISS 68 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~v-------------~~~m~~~A~~~~~~~~~~--v~~~~~d~~~lp~~~~sfD~V~s~~~ 68 (276)
.+.|.+||+++.|.+.-+..+ .+.|++.|+++....+.. +.+..++. .++..++||+|+++..
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~--~~~~~~~fDlVvan~~ 234 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYL--EQPIEGKADVIVANIL 234 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccc--ccccCCCceEEEEecC
Confidence 467899999999987532222 167788887776654433 44444442 3345679999999754
Q ss_pred cccCChHHHHHHHHHhccCCcEEEEEecC
Q 023870 69 SHELPGDQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 69 l~~~~~~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
.+.+ ..++.+++++|||||+|+++...
T Consensus 235 ~~~l--~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 235 AEVI--KELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred HHHH--HHHHHHHHHHcCCCcEEEEEeCc
Confidence 3322 57899999999999999998765
No 90
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.64 E-value=0.00047 Score=60.86 Aligned_cols=90 Identities=16% Similarity=0.111 Sum_probs=63.0
Q ss_pred CCCCcEEEEccCCCCcHHHH------------HHHHHHHHHH-h-hh-----------hCCCCeEEEeccCCCCCCC-CC
Q 023870 5 KMQSAVLALSEDKILPVSAV------------LNAIRDLGDE-A-VE-----------QCDPQIITQASSLSQLPVE-SF 58 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~-~-~~-----------~~~~~v~~~~~d~~~lp~~-~~ 58 (276)
..+.+||+++.|.+..+.-+ .+..++.+.+ + .. .....|.+.++|+.+++.. ..
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 56789999999997653322 2444443321 1 10 0134588899999888543 35
Q ss_pred ceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEE
Q 023870 59 SIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIY 94 (276)
Q Consensus 59 sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~ 94 (276)
.||.|+-...+++++. ..+++.++++|||||++++.
T Consensus 116 ~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 116 DVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred CeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 8999999888888875 78999999999999975553
No 91
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.64 E-value=0.00027 Score=66.58 Aligned_cols=89 Identities=16% Similarity=0.098 Sum_probs=65.5
Q ss_pred CCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccC
Q 023870 7 QSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL 72 (276)
Q Consensus 7 g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~ 72 (276)
..+||+++.|.+.-+..+. +.|++.|++.....+....++.+|+... ..+.||+|+++..+|+.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD--IKGRFDMIISNPPFHDG 274 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc--cCCCccEEEECCCccCC
Confidence 3479999988875432222 5788888877766666666676776542 36789999999888863
Q ss_pred C-----h-HHHHHHHHHhccCCcEEEEEecC
Q 023870 73 P-----G-DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 73 ~-----~-~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
. . ..+++++.+.|||||.|++....
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 2 2 78999999999999999887654
No 92
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.62 E-value=0.00028 Score=62.62 Aligned_cols=85 Identities=18% Similarity=0.209 Sum_probs=64.7
Q ss_pred CCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870 5 KMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE 71 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~ 71 (276)
+....|++|+.|.+.-+..+. +.+++.+++ ..+|+++.+|+. -++|. +|+|+....+|.
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-----~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~ 170 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-----ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHD 170 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-----TTTEEEEES-TT-TCCSS--ESEEEEESSGGG
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-----ccccccccccHH-hhhcc--ccceeeehhhhh
Confidence 344578999999875444343 555555544 367999999997 57776 999999999999
Q ss_pred CCh---HHHHHHHHHhccCC--cEEEEEecC
Q 023870 72 LPG---DQLLEEISRVLKPG--GTILIYKKL 97 (276)
Q Consensus 72 ~~~---~~~l~ei~rvLKPg--G~l~i~~~~ 97 (276)
|++ ..+|+.+++.|+|| |+|+|.+..
T Consensus 171 ~~d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 171 WSDEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp S-HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred cchHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 987 77999999999999 999999875
No 93
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.60 E-value=0.00066 Score=57.28 Aligned_cols=91 Identities=20% Similarity=0.213 Sum_probs=64.6
Q ss_pred CCCcEEEEccCCCCcHHHH--------------HHHHHHHHHHhhhhCCCC-eEEEeccCCCCCCCCCceeEEEeccccc
Q 023870 6 MQSAVLALSEDKILPVSAV--------------LNAIRDLGDEAVEQCDPQ-IITQASSLSQLPVESFSIDTVLSISSSH 70 (276)
Q Consensus 6 ~g~~vL~v~~~~~~~~~~v--------------~~~m~~~A~~~~~~~~~~-v~~~~~d~~~lp~~~~sfD~V~s~~~l~ 70 (276)
.+.+||.++.|.+.-+-.+ .+.+++.+++.+...+.. +.++.+|+.. +++..+||+|+++-.+|
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccc-cccccceeEEEEccchh
Confidence 4678899988886321111 167778888877776666 8888888754 34478999999988766
Q ss_pred cCCh------HHHHHHHHHhccCCcEEEEEecC
Q 023870 71 ELPG------DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 71 ~~~~------~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
.-.. ..++.+..+.|||||.|++....
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 5432 77899999999999999776543
No 94
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.59 E-value=0.00053 Score=59.67 Aligned_cols=88 Identities=13% Similarity=0.080 Sum_probs=63.6
Q ss_pred CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870 4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSISSSH 70 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~~l~ 70 (276)
++.+++||.++.|.+.....+. +.|++.++++....+. ++.+..+++.....+.+.||+|++....+
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~ 155 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAP 155 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCch
Confidence 4678999999999875432221 5677778777665554 38888888765322357899999977655
Q ss_pred cCChHHHHHHHHHhccCCcEEEEEec
Q 023870 71 ELPGDQLLEEISRVLKPGGTILIYKK 96 (276)
Q Consensus 71 ~~~~~~~l~ei~rvLKPgG~l~i~~~ 96 (276)
++ ..++++.|+|||++++...
T Consensus 156 ~~-----~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 156 EI-----PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred hh-----hHHHHHhcCCCcEEEEEEc
Confidence 44 4568899999999998765
No 95
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.56 E-value=0.00026 Score=61.17 Aligned_cols=112 Identities=19% Similarity=0.161 Sum_probs=70.2
Q ss_pred CCCCCCCcEEEEccCCCCcHHHHHHHHH------HHHHHhhhh-CCCCeEEEeccCC-CC-CCCCCceeEEEeccccccC
Q 023870 2 DTGKMQSAVLALSEDKILPVSAVLNAIR------DLGDEAVEQ-CDPQIITQASSLS-QL-PVESFSIDTVLSISSSHEL 72 (276)
Q Consensus 2 ~~~~~g~~vL~v~~~~~~~~~~v~~~m~------~~A~~~~~~-~~~~v~~~~~d~~-~l-p~~~~sfD~V~s~~~l~~~ 72 (276)
+-+++|.+||+++.|.+.-+..+.+... ++..+++.+ -...+.++++|++ .| .|++.+||+|+.+.+++++
T Consensus 9 ~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~ 88 (193)
T PF07021_consen 9 EWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV 88 (193)
T ss_pred HHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH
Confidence 3578999999999998654433332110 000111110 0122567889986 45 4999999999999999998
Q ss_pred Ch-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchh
Q 023870 73 PG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ 124 (276)
Q Consensus 73 ~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~ 124 (276)
.. ..+|.|+.|+ |...+++-+.-+ .| ..+..+.+.|=+.+.
T Consensus 89 ~~P~~vL~EmlRV---gr~~IVsFPNFg-------~W-~~R~~l~~~GrmPvt 130 (193)
T PF07021_consen 89 RRPDEVLEEMLRV---GRRAIVSFPNFG-------HW-RNRLQLLLRGRMPVT 130 (193)
T ss_pred hHHHHHHHHHHHh---cCeEEEEecChH-------HH-HHHHHHHhcCCCCCC
Confidence 87 8899999888 445565554321 12 223356666766544
No 96
>PRK00811 spermidine synthase; Provisional
Probab=97.50 E-value=0.00086 Score=61.44 Aligned_cols=93 Identities=16% Similarity=0.172 Sum_probs=66.2
Q ss_pred CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhh------CCCCeEEEeccCCC-CCCCCCceeEE
Q 023870 5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQ------CDPQIITQASSLSQ-LPVESFSIDTV 63 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~------~~~~v~~~~~d~~~-lp~~~~sfD~V 63 (276)
+...+||+++.|.+.-++.+. +.|++.|++.... .+.++.++.+|+.. +....++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 456789999988765444333 7788888776542 24568888898764 33356799999
Q ss_pred EeccccccCC-----hHHHHHHHHHhccCCcEEEEEecC
Q 023870 64 LSISSSHELP-----GDQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 64 ~s~~~l~~~~-----~~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
++-..-.+.+ ..++++.+++.|+|||.+++....
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 9865433322 267899999999999999986443
No 97
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.48 E-value=0.0014 Score=60.97 Aligned_cols=83 Identities=16% Similarity=0.116 Sum_probs=58.0
Q ss_pred CCCcEEEEccCCCCcHHHH------------HHHHHHHHHHhhhhC------CCCeEEEeccCCCCCCCCCceeEEEecc
Q 023870 6 MQSAVLALSEDKILPVSAV------------LNAIRDLGDEAVEQC------DPQIITQASSLSQLPVESFSIDTVLSIS 67 (276)
Q Consensus 6 ~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~~~~------~~~v~~~~~d~~~lp~~~~sfD~V~s~~ 67 (276)
.|.+||+++.|.+.....+ .+.|++.|+++.... ...+.|..+|++.+ +++||+|++..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~ 220 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLD 220 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcC
Confidence 4789999999987543222 378999988876543 23477888887664 57899999999
Q ss_pred ccccCCh---HHHHHHHHHhccCCcEEE
Q 023870 68 SSHELPG---DQLLEEISRVLKPGGTIL 92 (276)
Q Consensus 68 ~l~~~~~---~~~l~ei~rvLKPgG~l~ 92 (276)
+++|+++ ..+++.+.+ +.+||.++
T Consensus 221 vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 221 VLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred EEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 8888875 345565554 45555544
No 98
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.46 E-value=0.0021 Score=57.74 Aligned_cols=112 Identities=21% Similarity=0.226 Sum_probs=72.5
Q ss_pred CCCCcEEEEccCCCCcHHHH--------------HHHHHHHHHHhhh-hCCCCeEEEeccCCCCCCCCCceeEEEecccc
Q 023870 5 KMQSAVLALSEDKILPVSAV--------------LNAIRDLGDEAVE-QCDPQIITQASSLSQLPVESFSIDTVLSISSS 69 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~~v--------------~~~m~~~A~~~~~-~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l 69 (276)
..+.+||.++.|.+.....+ .+.|++.|+++.. ....++.++.+|+.. +++.++||+|+++..+
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPY 185 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCc
Confidence 45678999988876442222 2567777777665 233458888888854 3446799999985322
Q ss_pred cc------C--------------------Ch-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcc
Q 023870 70 HE------L--------------------PG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD 122 (276)
Q Consensus 70 ~~------~--------------------~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~ 122 (276)
.. + .. ..++.++.++|||||++++.... ... +.+...+..+||..
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~-----~~~---~~~~~~l~~~gf~~ 257 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY-----DQG---EAVRALLAAAGFAD 257 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc-----hHH---HHHHHHHHhCCCce
Confidence 10 0 01 45778888999999999985422 111 24556677899986
Q ss_pred hhh
Q 023870 123 AQR 125 (276)
Q Consensus 123 v~~ 125 (276)
++.
T Consensus 258 v~~ 260 (275)
T PRK09328 258 VET 260 (275)
T ss_pred eEE
Confidence 554
No 99
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.46 E-value=0.0018 Score=58.28 Aligned_cols=135 Identities=11% Similarity=0.146 Sum_probs=86.2
Q ss_pred CCCCCCcEEEEccCCCCc-H-------------HHHHHHHHHHHHHhhhhCC--CCeEEEeccCCCCC--CCCCceeEEE
Q 023870 3 TGKMQSAVLALSEDKILP-V-------------SAVLNAIRDLGDEAVEQCD--PQIITQASSLSQLP--VESFSIDTVL 64 (276)
Q Consensus 3 ~~~~g~~vL~v~~~~~~~-~-------------~~v~~~m~~~A~~~~~~~~--~~v~~~~~d~~~lp--~~~~sfD~V~ 64 (276)
.++...++|+++.|.+.- + -.+.+.|.++|++.+...+ .++.++++|+.++. +..++||+|+
T Consensus 41 ~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii 120 (248)
T COG4123 41 PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLII 120 (248)
T ss_pred ccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEE
Confidence 345578889998877632 1 0123888899988876644 45899999998774 4556899999
Q ss_pred ecccc----------------cc-CC-h-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhh
Q 023870 65 SISSS----------------HE-LP-G-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125 (276)
Q Consensus 65 s~~~l----------------~~-~~-~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~ 125 (276)
|+-.+ +| .. + +++++-..++|||||+|++.-... .+ ..+...+...+|.....
T Consensus 121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e----rl----~ei~~~l~~~~~~~k~i 192 (248)
T COG4123 121 CNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE----RL----AEIIELLKSYNLEPKRI 192 (248)
T ss_pred eCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH----HH----HHHHHHHHhcCCCceEE
Confidence 96321 11 22 2 789999999999999999886431 12 24455667667765443
Q ss_pred hhcccccCCceeEEEEeecc
Q 023870 126 IQLKSVVPAEVVSFGVKGKK 145 (276)
Q Consensus 126 ~~~~~~~~~~~~~~~i~akK 145 (276)
..+.|........+.+.+.|
T Consensus 193 ~~V~p~~~k~A~~vLv~~~k 212 (248)
T COG4123 193 QFVYPKIGKAANRVLVEAIK 212 (248)
T ss_pred EEecCCCCCcceEEEEEEec
Confidence 33222211223455566665
No 100
>PRK01581 speE spermidine synthase; Validated
Probab=97.46 E-value=0.0011 Score=62.70 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=76.3
Q ss_pred CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHh--h------hhCCCCeEEEeccCCC-CCCCCCcee
Q 023870 5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEA--V------EQCDPQIITQASSLSQ-LPVESFSID 61 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~--~------~~~~~~v~~~~~d~~~-lp~~~~sfD 61 (276)
..-.+||+++.|.+..++.+. +.|++.|++. . ...+.++.++.+|+.. +.-..+.||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 345689999988764444333 7788888751 1 1134678888888865 444567899
Q ss_pred EEEeccccc------cCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcch
Q 023870 62 TVLSISSSH------ELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA 123 (276)
Q Consensus 62 ~V~s~~~l~------~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v 123 (276)
+|++-..-. .+...++++.+++.|+|||.|+++...+. ........+...+..+||...
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~---~~~~~~~~i~~tL~~af~~v~ 293 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPA---DAPLVYWSIGNTIEHAGLTVK 293 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChh---hhHHHHHHHHHHHHHhCCceE
Confidence 999864211 12237899999999999999988754431 112222346677888888654
No 101
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.44 E-value=0.00039 Score=59.71 Aligned_cols=79 Identities=16% Similarity=0.050 Sum_probs=57.8
Q ss_pred CCCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEEEeccCCC-C-CCCCCceeEEEecc
Q 023870 3 TGKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIITQASSLSQ-L-PVESFSIDTVLSIS 67 (276)
Q Consensus 3 ~~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~~~~d~~~-l-p~~~~sfD~V~s~~ 67 (276)
.++.+.+||.++.|.+.-...+. +.|++.+++ ..+.++++++.+ + ++++++||+|+++.
T Consensus 10 ~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~------~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 10 LIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA------RGVNVIQGDLDEGLEAFPDKSFDYVILSQ 83 (194)
T ss_pred hcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH------cCCeEEEEEhhhcccccCCCCcCEEEEhh
Confidence 46778899999988874432221 344444432 135677788865 5 47888999999999
Q ss_pred ccccCCh-HHHHHHHHHhccC
Q 023870 68 SSHELPG-DQLLEEISRVLKP 87 (276)
Q Consensus 68 ~l~~~~~-~~~l~ei~rvLKP 87 (276)
++||+++ ..++++++|++++
T Consensus 84 ~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 84 TLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred HhHcCcCHHHHHHHHHHhCCe
Confidence 9999988 8899999998765
No 102
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.43 E-value=0.00025 Score=67.24 Aligned_cols=96 Identities=21% Similarity=0.249 Sum_probs=69.0
Q ss_pred CCCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhh--CCCCeEEEeccCCCCCCCCCceeEEEecc
Q 023870 3 TGKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQ--CDPQIITQASSLSQLPVESFSIDTVLSIS 67 (276)
Q Consensus 3 ~~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~--~~~~v~~~~~d~~~lp~~~~sfD~V~s~~ 67 (276)
..++|+.++.+.-+...+.+-+- +.-..++...... ......++.+++-+.|+++++||.+.++-
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 45677888888888776643222 1111111111111 11223458889999999999999999999
Q ss_pred ccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870 68 SSHELPG-DQLLEEISRVLKPGGTILIYKKLT 98 (276)
Q Consensus 68 ~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~ 98 (276)
+.+|.++ ..+++|++|++||||+++..+|..
T Consensus 187 ~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~ 218 (364)
T KOG1269|consen 187 VVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIK 218 (364)
T ss_pred ecccCCcHHHHHHHHhcccCCCceEEeHHHHH
Confidence 9999998 999999999999999999998753
No 103
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.42 E-value=0.00081 Score=57.47 Aligned_cols=91 Identities=16% Similarity=0.002 Sum_probs=57.7
Q ss_pred CCCCCCcEEEEccCCCCcHHHHHHHHHHHHHH--hhh-----h--CCCCeEEEeccCCCCC--------CCCCceeEEEe
Q 023870 3 TGKMQSAVLALSEDKILPVSAVLNAIRDLGDE--AVE-----Q--CDPQIITQASSLSQLP--------VESFSIDTVLS 65 (276)
Q Consensus 3 ~~~~g~~vL~v~~~~~~~~~~v~~~m~~~A~~--~~~-----~--~~~~v~~~~~d~~~lp--------~~~~sfD~V~s 65 (276)
.++.|++||.++.|.+.-.. .+.+.... ++- . ....+.++++++.+.+ ++.++||+|++
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~----~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~ 104 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQ----VAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMS 104 (188)
T ss_pred ccCCCCEEEEecCCCCHHHH----HHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEc
Confidence 46789999999999874222 22221111 000 0 1124667778876643 46778999998
Q ss_pred ccccc----cCC-------h-HHHHHHHHHhccCCcEEEEEecC
Q 023870 66 ISSSH----ELP-------G-DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 66 ~~~l~----~~~-------~-~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
..+.+ |.. . +.++.+++++|+|||++++..+.
T Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 105 DAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred CCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 54321 111 1 57899999999999999997654
No 104
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=97.41 E-value=0.00049 Score=60.41 Aligned_cols=88 Identities=16% Similarity=0.191 Sum_probs=60.4
Q ss_pred CCCCCcEEEEccCCCCcHH---HHH------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEecc
Q 023870 4 GKMQSAVLALSEDKILPVS---AVL------------NAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSIS 67 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~---~v~------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~ 67 (276)
+++|++||.|+.|.+-... .++ +.+.+.|+++....+. ++.++.+|....--....||.|+...
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~ 149 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVTA 149 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEESS
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEee
Confidence 7899999999999864422 221 6677788888776665 58899999865433456899999987
Q ss_pred ccccCChHHHHHHHHHhccCCcEEEEEec
Q 023870 68 SSHELPGDQLLEEISRVLKPGGTILIYKK 96 (276)
Q Consensus 68 ~l~~~~~~~~l~ei~rvLKPgG~l~i~~~ 96 (276)
+...++ ..+.+.||+||++++-..
T Consensus 150 a~~~ip-----~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 150 AVPEIP-----EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp BBSS-------HHHHHTEEEEEEEEEEES
T ss_pred ccchHH-----HHHHHhcCCCcEEEEEEc
Confidence 765544 457888999999997653
No 105
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.40 E-value=0.0026 Score=61.59 Aligned_cols=94 Identities=15% Similarity=0.106 Sum_probs=67.1
Q ss_pred CCCCCcEEEEccCCCCcHHHH--------------HHHHHHHHHHhhhhCCCCeEEEeccCCCCC--CCCCceeEEEecc
Q 023870 4 GKMQSAVLALSEDKILPVSAV--------------LNAIRDLGDEAVEQCDPQIITQASSLSQLP--VESFSIDTVLSIS 67 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~v--------------~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp--~~~~sfD~V~s~~ 67 (276)
.+.|++||++..|.+.-...+ .+.|++.+++++...+..+.++.+|+..++ ++.++||.|++..
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 467899999988876432212 266778888877777777788999998764 3467899999532
Q ss_pred c------------cccCCh-----------HHHHHHHHHhccCCcEEEEEecC
Q 023870 68 S------------SHELPG-----------DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 68 ~------------l~~~~~-----------~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
. +.|... ..++.+++++|||||+|++++-+
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 1 112111 36899999999999999988864
No 106
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.39 E-value=0.0016 Score=47.60 Aligned_cols=54 Identities=28% Similarity=0.485 Sum_probs=44.7
Q ss_pred CCeEEEeccCCCCCC-CCCceeEEEecccccc-CCh-HHHHHHHHHhccCCcEEEEE
Q 023870 41 PQIITQASSLSQLPV-ESFSIDTVLSISSSHE-LPG-DQLLEEISRVLKPGGTILIY 94 (276)
Q Consensus 41 ~~v~~~~~d~~~lp~-~~~sfD~V~s~~~l~~-~~~-~~~l~ei~rvLKPgG~l~i~ 94 (276)
..+.+...++.+... ....||+|++...+++ ... ..+++.+.+.|+|||.+++.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 47 DNVEVLKGDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred cceEEEEcChhhhccccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 457888888887654 5678999999988877 444 88999999999999999875
No 107
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.38 E-value=0.0011 Score=61.11 Aligned_cols=94 Identities=15% Similarity=0.127 Sum_probs=64.9
Q ss_pred CCCCCcEEEEccCCCCcHHH---------------HHHHHHHHHHHhhhhCC--CCeEEEeccCCC-CCCCCCc----ee
Q 023870 4 GKMQSAVLALSEDKILPVSA---------------VLNAIRDLGDEAVEQCD--PQIITQASSLSQ-LPVESFS----ID 61 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~---------------v~~~m~~~A~~~~~~~~--~~v~~~~~d~~~-lp~~~~s----fD 61 (276)
++.+..||.++.|.+.-... +.+.|++.++++..... .++.++++|+.+ ++++... ..
T Consensus 61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeE
Confidence 45677889998888753222 33678888877765533 457788999876 4554433 23
Q ss_pred EEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 023870 62 TVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 62 ~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
++++.+++++++. ..+|++++++|+|||.|++....
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccC
Confidence 3444456777764 67899999999999999886544
No 108
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=97.37 E-value=0.0014 Score=62.51 Aligned_cols=89 Identities=18% Similarity=0.169 Sum_probs=63.5
Q ss_pred CCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhCCC----CeEEEeccCCCCCCCCCceeEEEeccc
Q 023870 7 QSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQCDP----QIITQASSLSQLPVESFSIDTVLSISS 68 (276)
Q Consensus 7 g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~~~----~v~~~~~d~~~lp~~~~sfD~V~s~~~ 68 (276)
+.+||+++.|.+.-...+. +.|++.|++++...+. ++.+..+|+.. .++..+||+|+++-.
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPP 307 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPP 307 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-cCCCCCEEEEEECcC
Confidence 4589999888864322221 5788888776654332 46777777743 234568999999877
Q ss_pred cccCC---h---HHHHHHHHHhccCCcEEEEEec
Q 023870 69 SHELP---G---DQLLEEISRVLKPGGTILIYKK 96 (276)
Q Consensus 69 l~~~~---~---~~~l~ei~rvLKPgG~l~i~~~ 96 (276)
+|... + .+++.+++++|||||.|++...
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 76542 2 6789999999999999998864
No 109
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.35 E-value=0.0027 Score=61.54 Aligned_cols=94 Identities=19% Similarity=0.139 Sum_probs=67.0
Q ss_pred CCCCCcEEEEccCCCCcHH---------------HHHHHHHHHHHHhhhhCCC-CeEEEeccCCCCC----CCCCceeEE
Q 023870 4 GKMQSAVLALSEDKILPVS---------------AVLNAIRDLGDEAVEQCDP-QIITQASSLSQLP----VESFSIDTV 63 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~---------------~v~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp----~~~~sfD~V 63 (276)
.+.|++||++..+.+.-.. ++.+.|++.+++++...+. ++.++.+|+..++ +..++||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 4678999999887753211 2237777778777776665 4888899998776 456799999
Q ss_pred Eecc------ccccCC-----------------hHHHHHHHHHhccCCcEEEEEecC
Q 023870 64 LSIS------SSHELP-----------------GDQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 64 ~s~~------~l~~~~-----------------~~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
++-. +++..+ ..++|.+++++|||||+|+.++-.
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 9621 222211 146799999999999999988754
No 110
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.34 E-value=0.00022 Score=69.40 Aligned_cols=72 Identities=25% Similarity=0.296 Sum_probs=50.9
Q ss_pred CCCCCCCCCceeEEEecccc-ccCCh-HHHHHHHHHhccCCcEEEEEecCCC--CchhHHHHHHHHHHHHHHCCCc
Q 023870 50 LSQLPVESFSIDTVLSISSS-HELPG-DQLLEEISRVLKPGGTILIYKKLTS--DKGDVDKAISALEGKLLLAGFL 121 (276)
Q Consensus 50 ~~~lp~~~~sfD~V~s~~~l-~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~--~~~~~~~~~~~l~~~l~laGF~ 121 (276)
-..|||++++||+|.|.-.+ .|... .-+|-|+.|+|+|||+|+++.+... +..+....|..++...+.--+.
T Consensus 172 s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~ 247 (506)
T PF03141_consen 172 SQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWK 247 (506)
T ss_pred cccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999986544 45444 6789999999999999998876533 2234555666665544444443
No 111
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.32 E-value=0.0022 Score=57.61 Aligned_cols=113 Identities=19% Similarity=0.247 Sum_probs=79.7
Q ss_pred CCCCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEe
Q 023870 3 TGKMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLS 65 (276)
Q Consensus 3 ~~~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s 65 (276)
.+.+|.+|+-.+-|.+.-...+. +...+.|+++....+. .+.+..+|+.+.-+++ .||+|+.
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~L 169 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVFL 169 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEEEE
Confidence 47889999999888763322111 5566778887766443 3778889998876655 9999987
Q ss_pred ccccccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhhh
Q 023870 66 ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQ 127 (276)
Q Consensus 66 ~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~~ 127 (276)
=..- +-.++..++++|||||.+.+..+.- ....+ +...|...||++++.++
T Consensus 170 Dmp~----PW~~le~~~~~Lkpgg~~~~y~P~v---eQv~k----t~~~l~~~g~~~ie~~E 220 (256)
T COG2519 170 DLPD----PWNVLEHVSDALKPGGVVVVYSPTV---EQVEK----TVEALRERGFVDIEAVE 220 (256)
T ss_pred cCCC----hHHHHHHHHHHhCCCcEEEEEcCCH---HHHHH----HHHHHHhcCccchhhhe
Confidence 5421 2578999999999999999998762 22333 33445666999988765
No 112
>PRK03612 spermidine synthase; Provisional
Probab=97.30 E-value=0.0013 Score=65.29 Aligned_cols=113 Identities=20% Similarity=0.254 Sum_probs=76.2
Q ss_pred CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHh--hhh------CCCCeEEEeccCCC-CCCCCCcee
Q 023870 5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEA--VEQ------CDPQIITQASSLSQ-LPVESFSID 61 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~--~~~------~~~~v~~~~~d~~~-lp~~~~sfD 61 (276)
+...+||+++.|.+.-.+.+. +.|++.+++. ... .+++++++.+|+.. +....++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 556789999888765433322 7788888772 211 23568888898865 333457999
Q ss_pred EEEeccccccCC------hHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCC
Q 023870 62 TVLSISSSHELP------GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGF 120 (276)
Q Consensus 62 ~V~s~~~l~~~~------~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF 120 (276)
+|++.....+.+ .+++++.+++.|||||.++++...+.. . .+....+.+.+...||
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~--~-~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYF--A-PKAFWSIEATLEAAGL 437 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCccc--c-hHHHHHHHHHHHHcCC
Confidence 999975433322 257999999999999999987644321 1 2223466777888999
No 113
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.29 E-value=0.0034 Score=60.73 Aligned_cols=95 Identities=16% Similarity=0.103 Sum_probs=64.5
Q ss_pred CCCCCcEEEEccCCCCcH---H-----------HHHHHHHHHHHHhhhhCCCCeE--EEeccCCCCCC--CCCceeEEEe
Q 023870 4 GKMQSAVLALSEDKILPV---S-----------AVLNAIRDLGDEAVEQCDPQII--TQASSLSQLPV--ESFSIDTVLS 65 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~---~-----------~v~~~m~~~A~~~~~~~~~~v~--~~~~d~~~lp~--~~~sfD~V~s 65 (276)
.+.|..||++..+.+.-. . ++.+.|++.+++++...+..+. +..++....++ +.++||.|++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 457889999988776221 1 1226777778777777666543 36666655544 5678999995
Q ss_pred c------cccccCCh-----------------HHHHHHHHHhccCCcEEEEEecCC
Q 023870 66 I------SSSHELPG-----------------DQLLEEISRVLKPGGTILIYKKLT 98 (276)
Q Consensus 66 ~------~~l~~~~~-----------------~~~l~ei~rvLKPgG~l~i~~~~~ 98 (276)
- ..++..++ .++|.+++++|||||+|++++.+-
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 2 12222221 469999999999999999998764
No 114
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=97.28 E-value=0.0037 Score=60.27 Aligned_cols=114 Identities=15% Similarity=0.122 Sum_probs=75.7
Q ss_pred CCCCCcEEEEccCCCCcHH--------------HHHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCC-CCceeEEEeccc
Q 023870 4 GKMQSAVLALSEDKILPVS--------------AVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVE-SFSIDTVLSISS 68 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~--------------~v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~-~~sfD~V~s~~~ 68 (276)
++.+.+||+++.|.+.-+. ++.+.|++.|++++...+.++.++++|+.+..++ ..+||+|+++-.
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPP 328 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPP 328 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCC
Confidence 4566789999888763321 1227899999888777667789999998654433 458999999653
Q ss_pred ccc------------------C---Ch-----HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcc
Q 023870 69 SHE------------------L---PG-----DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD 122 (276)
Q Consensus 69 l~~------------------~---~~-----~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~ 122 (276)
... + .+ ..+++++.+.|+|||.+++..... .. +.+...+...||..
T Consensus 329 YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~-----Q~---e~V~~ll~~~Gf~~ 400 (423)
T PRK14966 329 YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD-----QG---AAVRGVLAENGFSG 400 (423)
T ss_pred CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc-----HH---HHHHHHHHHCCCcE
Confidence 210 0 01 356667778999999988654321 11 15556677789976
Q ss_pred hhh
Q 023870 123 AQR 125 (276)
Q Consensus 123 v~~ 125 (276)
++.
T Consensus 401 v~v 403 (423)
T PRK14966 401 VET 403 (423)
T ss_pred EEE
Confidence 544
No 115
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0023 Score=56.09 Aligned_cols=89 Identities=18% Similarity=0.225 Sum_probs=67.2
Q ss_pred CCCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEecccc
Q 023870 3 TGKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSISSS 69 (276)
Q Consensus 3 ~~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~~l 69 (276)
-+++|++||-|+.|.+=.+..|. +.+.+.|+++....+. +|.+.++|...-=-+...||.|+...+.
T Consensus 69 ~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa 148 (209)
T COG2518 69 ELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAA 148 (209)
T ss_pred CCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEeecc
Confidence 36899999999999875533333 5556678887777776 5899999986532234789999988776
Q ss_pred ccCChHHHHHHHHHhccCCcEEEEEec
Q 023870 70 HELPGDQLLEEISRVLKPGGTILIYKK 96 (276)
Q Consensus 70 ~~~~~~~~l~ei~rvLKPgG~l~i~~~ 96 (276)
..+| ..+.+-|||||++++-..
T Consensus 149 ~~vP-----~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 149 PEVP-----EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCC-----HHHHHhcccCCEEEEEEc
Confidence 6665 457788999999998775
No 116
>PRK07402 precorrin-6B methylase; Provisional
Probab=97.25 E-value=0.0019 Score=55.50 Aligned_cols=91 Identities=14% Similarity=0.120 Sum_probs=62.0
Q ss_pred CCCCCcEEEEccCCCCcHHHH--------------HHHHHHHHHHhhhhCCC-CeEEEeccCCC-CCCCCCceeEEEecc
Q 023870 4 GKMQSAVLALSEDKILPVSAV--------------LNAIRDLGDEAVEQCDP-QIITQASSLSQ-LPVESFSIDTVLSIS 67 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~v--------------~~~m~~~A~~~~~~~~~-~v~~~~~d~~~-lp~~~~sfD~V~s~~ 67 (276)
++.|..||.++.|.+.-...+ .+.|++.+++++...+. +++++.+++.. ++.-...+|.|+...
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~ 117 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG 117 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC
Confidence 457889999999887532211 17788888877655443 48888888754 332223467665432
Q ss_pred ccccCChHHHHHHHHHhccCCcEEEEEecC
Q 023870 68 SSHELPGDQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 68 ~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
. ..-..++++++++|+|||+|++....
T Consensus 118 ~---~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 118 G---RPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred C---cCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 1 11268999999999999999998764
No 117
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.0028 Score=58.52 Aligned_cols=116 Identities=19% Similarity=0.207 Sum_probs=74.2
Q ss_pred CCCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCC-CceeEEEeccc
Q 023870 3 TGKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVES-FSIDTVLSISS 68 (276)
Q Consensus 3 ~~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~-~sfD~V~s~~~ 68 (276)
.++.|.+||+++.|.+.-+..+. +..++.|++++...+..-.....-...+..+. ..||+|+++-.
T Consensus 159 ~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANIL 238 (300)
T COG2264 159 LLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANIL 238 (300)
T ss_pred hhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhh
Confidence 45689999999999875433222 55566677766655544111111122233444 59999999752
Q ss_pred cccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhhh
Q 023870 69 SHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQ 127 (276)
Q Consensus 69 l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~~ 127 (276)
.+- -..+..++++.|||||+++++--. ....+.+...+..+||..+....
T Consensus 239 A~v--l~~La~~~~~~lkpgg~lIlSGIl-------~~q~~~V~~a~~~~gf~v~~~~~ 288 (300)
T COG2264 239 AEV--LVELAPDIKRLLKPGGRLILSGIL-------EDQAESVAEAYEQAGFEVVEVLE 288 (300)
T ss_pred HHH--HHHHHHHHHHHcCCCceEEEEeeh-------HhHHHHHHHHHHhCCCeEeEEEe
Confidence 211 157889999999999999988533 12223566678889998766543
No 118
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.23 E-value=0.0016 Score=58.17 Aligned_cols=74 Identities=23% Similarity=0.311 Sum_probs=56.1
Q ss_pred CCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecCCCCchhHHH----------------------
Q 023870 52 QLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKLTSDKGDVDK---------------------- 106 (276)
Q Consensus 52 ~lp~~~~sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~---------------------- 106 (276)
.-|...+++|+|++++++..++. +.++..++++|||||.+++.+.+...+..++-
T Consensus 137 ~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF 216 (264)
T KOG2361|consen 137 KEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFF 216 (264)
T ss_pred cCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeec
Confidence 44678999999999999888875 88999999999999999999886431100000
Q ss_pred HHHHHHHHHHHCCCcchhh
Q 023870 107 AISALEGKLLLAGFLDAQR 125 (276)
Q Consensus 107 ~~~~l~~~l~laGF~~v~~ 125 (276)
..+.|...+..+||..++.
T Consensus 217 ~~eeL~~~f~~agf~~~~~ 235 (264)
T KOG2361|consen 217 TEEELDELFTKAGFEEVQL 235 (264)
T ss_pred cHHHHHHHHHhcccchhcc
Confidence 1246667789999987764
No 119
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.22 E-value=0.0056 Score=56.13 Aligned_cols=107 Identities=16% Similarity=0.127 Sum_probs=70.6
Q ss_pred CCCcEEEEccCCCCcHH--------------HHHHHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEecccc
Q 023870 6 MQSAVLALSEDKILPVS--------------AVLNAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISSS 69 (276)
Q Consensus 6 ~g~~vL~v~~~~~~~~~--------------~v~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~l 69 (276)
.+.+||+++.|.+.-+. ++.+.|++.|++++...+. ++.++.+|+.. +++..+||+|+++-..
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 35689999888864321 1227788888887766554 48899999853 3456689999986221
Q ss_pred -------------ccCC------------h-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcc
Q 023870 70 -------------HELP------------G-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD 122 (276)
Q Consensus 70 -------------~~~~------------~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~ 122 (276)
++.+ . ..+++++.+.|+|||++++..... . ..+...+..+||.-
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~-----~----~~v~~~~~~~~~~~ 269 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNS-----M----EALEEAYPDVPFTW 269 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcC-----H----HHHHHHHHhCCCce
Confidence 1111 1 467888999999999999766431 1 14455566677764
No 120
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.20 E-value=0.002 Score=60.24 Aligned_cols=87 Identities=15% Similarity=0.088 Sum_probs=62.8
Q ss_pred CCCCCcEEEEccCCCCcHH---------------HHHHHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEecc
Q 023870 4 GKMQSAVLALSEDKILPVS---------------AVLNAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSIS 67 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~---------------~v~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~ 67 (276)
++.|++||.++.|.+.-+. +..+.|++.|++++...+. ++.++.+|+...+.....||+|++..
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~ 157 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTV 157 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECC
Confidence 5688999999998753211 1226788888877665554 47888999877665567899999876
Q ss_pred ccccCChHHHHHHHHHhccCCcEEEEEe
Q 023870 68 SSHELPGDQLLEEISRVLKPGGTILIYK 95 (276)
Q Consensus 68 ~l~~~~~~~~l~ei~rvLKPgG~l~i~~ 95 (276)
..+.+ ...+.+.|+|||++++..
T Consensus 158 g~~~i-----p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 158 GVDEV-----PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred chHHh-----HHHHHHhcCCCCEEEEEe
Confidence 54433 345789999999998764
No 121
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.17 E-value=0.0056 Score=55.97 Aligned_cols=109 Identities=20% Similarity=0.174 Sum_probs=70.4
Q ss_pred CcEEEEccCCCCcHHHH--------------HHHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEeccc---
Q 023870 8 SAVLALSEDKILPVSAV--------------LNAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISS--- 68 (276)
Q Consensus 8 ~~vL~v~~~~~~~~~~v--------------~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~--- 68 (276)
.+||+++.|.+..+..+ .+.+++.|++++...+. ++.++++|+.. +++...||+|+++-.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence 57999988886432212 26678888887765554 38899998865 455558999999621
Q ss_pred ----------cccCC------------h-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHH-HCCCcchh
Q 023870 69 ----------SHELP------------G-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLL-LAGFLDAQ 124 (276)
Q Consensus 69 ----------l~~~~------------~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~-laGF~~v~ 124 (276)
.+|.+ . ..++.++.+.|+|||.|++..... ... .+...+. ..||..++
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~-----q~~---~~~~~~~~~~~~~~~~ 266 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW-----QQK---SLKELLRIKFTWYDVE 266 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc-----HHH---HHHHHHHhcCCCceeE
Confidence 11111 1 467888999999999998766431 111 3333444 36887654
Q ss_pred h
Q 023870 125 R 125 (276)
Q Consensus 125 ~ 125 (276)
.
T Consensus 267 ~ 267 (284)
T TIGR00536 267 N 267 (284)
T ss_pred E
Confidence 4
No 122
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.15 E-value=0.00053 Score=63.06 Aligned_cols=53 Identities=15% Similarity=0.173 Sum_probs=45.3
Q ss_pred eEEEeccCCCCCCC-CCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEe
Q 023870 43 IITQASSLSQLPVE-SFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYK 95 (276)
Q Consensus 43 v~~~~~d~~~lp~~-~~sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~ 95 (276)
|.|.+.++.+.+++ .+.||+|+|.+++.++.. ..+++.+++.|+|||+|++..
T Consensus 206 V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 206 VDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred CEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 78888998876554 678999999999888864 789999999999999988664
No 123
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=97.07 E-value=0.0038 Score=60.73 Aligned_cols=94 Identities=17% Similarity=0.099 Sum_probs=66.6
Q ss_pred CCCCCcEEEEccCCCCc---HH------------HHHHHHHHHHHHhhhhCCCC-eEEEeccCCCCCCCCCceeEEEec-
Q 023870 4 GKMQSAVLALSEDKILP---VS------------AVLNAIRDLGDEAVEQCDPQ-IITQASSLSQLPVESFSIDTVLSI- 66 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~---~~------------~v~~~m~~~A~~~~~~~~~~-v~~~~~d~~~lp~~~~sfD~V~s~- 66 (276)
...|++||++..|.+.- +. ++.+.|++.+++++...+.. +.++.+|+..++ ++++||+|+.-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~ 326 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDA 326 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcC
Confidence 35788999998887631 11 12277788888877766654 788999998775 56789999952
Q ss_pred ---c--cc------ccC-C--------h--HHHHHHHHHhccCCcEEEEEecCC
Q 023870 67 ---S--SS------HEL-P--------G--DQLLEEISRVLKPGGTILIYKKLT 98 (276)
Q Consensus 67 ---~--~l------~~~-~--------~--~~~l~ei~rvLKPgG~l~i~~~~~ 98 (276)
. .+ .|. . . ..+|.+++++|||||+|++++-+-
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 1 11 111 1 1 358999999999999999998664
No 124
>PLN02366 spermidine synthase
Probab=97.06 E-value=0.0025 Score=59.23 Aligned_cols=91 Identities=16% Similarity=0.238 Sum_probs=63.3
Q ss_pred CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhh-----CCCCeEEEeccCCCC--CCCCCceeEE
Q 023870 5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQ-----CDPQIITQASSLSQL--PVESFSIDTV 63 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~-----~~~~v~~~~~d~~~l--p~~~~sfD~V 63 (276)
+...+||+|+.|.+.-++.+. +.|++.+++.... .+.+++++.+|+... ..+.+.||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 567889999988765444333 4678888776532 245688998986432 1235789999
Q ss_pred EeccccccCC-----hHHHHHHHHHhccCCcEEEEEe
Q 023870 64 LSISSSHELP-----GDQLLEEISRVLKPGGTILIYK 95 (276)
Q Consensus 64 ~s~~~l~~~~-----~~~~l~ei~rvLKPgG~l~i~~ 95 (276)
++-..-.+.+ ..++++.+++.|+|||.|+++.
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 9854332222 2679999999999999998754
No 125
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.03 E-value=0.0079 Score=58.37 Aligned_cols=95 Identities=14% Similarity=0.078 Sum_probs=66.9
Q ss_pred CCCCCcEEEEccCCCCcHH---------------HHHHHHHHHHHHhhhhCCCC-eEEEeccCCCCC-CCCCceeEEEec
Q 023870 4 GKMQSAVLALSEDKILPVS---------------AVLNAIRDLGDEAVEQCDPQ-IITQASSLSQLP-VESFSIDTVLSI 66 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~---------------~v~~~m~~~A~~~~~~~~~~-v~~~~~d~~~lp-~~~~sfD~V~s~ 66 (276)
++.|.+||++..+.+.-.- ++.+.|++.+++++...+.. +.+.++|+..++ +..++||.|++-
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 4678899999877763211 12267778888777766654 788899988776 556789999962
Q ss_pred c---ccccC---C----------------h-HHHHHHHHHhccCCcEEEEEecCC
Q 023870 67 S---SSHEL---P----------------G-DQLLEEISRVLKPGGTILIYKKLT 98 (276)
Q Consensus 67 ~---~l~~~---~----------------~-~~~l~ei~rvLKPgG~l~i~~~~~ 98 (276)
. .+..+ + . .++|.++++.|||||+++.++-+-
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 1 11111 1 1 456889999999999999988764
No 126
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.02 E-value=0.0054 Score=55.25 Aligned_cols=114 Identities=16% Similarity=0.187 Sum_probs=74.2
Q ss_pred CCCCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCC--CeEEEeccCCCCCCC---CCceeE
Q 023870 3 TGKMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDP--QIITQASSLSQLPVE---SFSIDT 62 (276)
Q Consensus 3 ~~~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~---~~sfD~ 62 (276)
.+++|++|+=.+.|.+.-...+. +...+.|++.....+. .+.+...|+..-.|+ ++.||.
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Da 116 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDA 116 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEE
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccE
Confidence 47899999999888874322222 5556777777776665 488899998654443 368999
Q ss_pred EEeccccccCChHHHHHHHHHhc-cCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhhh
Q 023870 63 VLSISSSHELPGDQLLEEISRVL-KPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQ 127 (276)
Q Consensus 63 V~s~~~l~~~~~~~~l~ei~rvL-KPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~~ 127 (276)
|+.=..-- -.++..+.++| ||||+|.+..+. +.+. +.+...|...||.+++..+
T Consensus 117 vfLDlp~P----w~~i~~~~~~L~~~gG~i~~fsP~------ieQv-~~~~~~L~~~gf~~i~~~E 171 (247)
T PF08704_consen 117 VFLDLPDP----WEAIPHAKRALKKPGGRICCFSPC------IEQV-QKTVEALREHGFTDIETVE 171 (247)
T ss_dssp EEEESSSG----GGGHHHHHHHE-EEEEEEEEEESS------HHHH-HHHHHHHHHTTEEEEEEEE
T ss_pred EEEeCCCH----HHHHHHHHHHHhcCCceEEEECCC------HHHH-HHHHHHHHHCCCeeeEEEE
Confidence 98754322 35789999999 999999998876 2221 1344567888999887654
No 127
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.00 E-value=0.00099 Score=57.94 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=37.8
Q ss_pred CeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEe
Q 023870 42 QIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYK 95 (276)
Q Consensus 42 ~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~ 95 (276)
.|.|.+.++.+.+.+.+.||+|+|.+++.++.. ..+++.+++.|+|||+|++..
T Consensus 119 ~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 119 MVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred ceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 488999998885556789999999999999886 789999999999999999865
No 128
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.00 E-value=0.0012 Score=58.24 Aligned_cols=101 Identities=16% Similarity=0.173 Sum_probs=64.3
Q ss_pred HHHHHHHHHhhhhCCCC-eEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecCCCCc
Q 023870 26 NAIRDLGDEAVEQCDPQ-IITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKLTSDK 101 (276)
Q Consensus 26 ~~m~~~A~~~~~~~~~~-v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~~~~~ 101 (276)
+..++.|++........ ..+.+..+++..-+...||+|++-..+.|+.+ -++|+.+...|+|+|.+++.+......
T Consensus 88 ~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~ 167 (218)
T PF05891_consen 88 EKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSG 167 (218)
T ss_dssp HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSS
T ss_pred HHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCC
Confidence 55566666554432233 45666778777655679999999999999987 678999999999999999998654211
Q ss_pred --------hhHHHHHHHHHHHHHHCCCcchhhh
Q 023870 102 --------GDVDKAISALEGKLLLAGFLDAQRI 126 (276)
Q Consensus 102 --------~~~~~~~~~l~~~l~laGF~~v~~~ 126 (276)
..+.+..+.+.+.+..||+.-+...
T Consensus 168 ~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 168 FDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp EEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred CcccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 1112223466777899999876644
No 129
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.99 E-value=0.008 Score=54.43 Aligned_cols=94 Identities=12% Similarity=0.092 Sum_probs=64.7
Q ss_pred CCCCCcEEEEccCCCCcHH---------------HHHHHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEecc
Q 023870 4 GKMQSAVLALSEDKILPVS---------------AVLNAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSIS 67 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~---------------~v~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~ 67 (276)
+++|++||++..+.+.-.- ++.+.|++.+++++...+. ++.+..+|+..++.....||+|+.-.
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 4678899999887653211 2226677777777766654 47888888887766566799999632
Q ss_pred c------cc--------cC-------C-h-HHHHHHHHHhccCCcEEEEEecC
Q 023870 68 S------SH--------EL-------P-G-DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 68 ~------l~--------~~-------~-~-~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
. +. +. . . .++|.++.+.|||||+|+.++-+
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 1 10 10 0 1 45899999999999999988754
No 130
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=96.96 E-value=0.0065 Score=54.04 Aligned_cols=93 Identities=12% Similarity=-0.073 Sum_probs=66.1
Q ss_pred CCCCcEEEEccCCCCcHHHH------------HHHHHHHHHHhh-------------hhCCCCeEEEeccCCCCCCC---
Q 023870 5 KMQSAVLALSEDKILPVSAV------------LNAIRDLGDEAV-------------EQCDPQIITQASSLSQLPVE--- 56 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~-------------~~~~~~v~~~~~d~~~lp~~--- 56 (276)
..|.+||+...|.+..+.-+ .+..++.+.+.. ...+..+.+.++|+-+++..
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~ 121 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN 121 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence 35689999999986543211 133344332210 11245689999999988642
Q ss_pred CCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 023870 57 SFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 57 ~~sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
.+.||+|+-...++.++. ....+.++++|+|||.+++....
T Consensus 122 ~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 122 LPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred cCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 257999999888888886 78999999999999999887653
No 131
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=96.82 E-value=0.00099 Score=60.70 Aligned_cols=55 Identities=36% Similarity=0.526 Sum_probs=50.4
Q ss_pred EEEeccCCCCCCCCCceeEEEeccccccCCh----HHHHHHHHHhccCCcEEEEEecCC
Q 023870 44 ITQASSLSQLPVESFSIDTVLSISSSHELPG----DQLLEEISRVLKPGGTILIYKKLT 98 (276)
Q Consensus 44 ~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~----~~~l~ei~rvLKPgG~l~i~~~~~ 98 (276)
....+|+.++|+.+.+||.++++.++||+.. ..+++|+.|+|+|||...++.|..
T Consensus 88 ~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 88 NVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred eeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 5677999999999999999999999999875 779999999999999999999874
No 132
>PHA03411 putative methyltransferase; Provisional
Probab=96.81 E-value=0.0081 Score=54.92 Aligned_cols=112 Identities=13% Similarity=0.046 Sum_probs=74.0
Q ss_pred CCCcEEEEccCCCCcHHHH--------------HHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870 6 MQSAVLALSEDKILPVSAV--------------LNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE 71 (276)
Q Consensus 6 ~g~~vL~v~~~~~~~~~~v--------------~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~ 71 (276)
.+.+||.++.|.+.....+ .+.|++.++++. .++.++.+|+..+.. ..+||+|+++-.+++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~----~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~ 138 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL----PEAEWITSDVFEFES-NEKFDVVISNPPFGK 138 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----cCCEEEECchhhhcc-cCCCcEEEEcCCccc
Confidence 4568999988887553222 267777776653 357889999987653 468999999776655
Q ss_pred CCh---------------------HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcch
Q 023870 72 LPG---------------------DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA 123 (276)
Q Consensus 72 ~~~---------------------~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v 123 (276)
.+. ..++....++|+|+|.+++.-.+.. ...-.-..++.++.|..+||+..
T Consensus 139 l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~-~y~~sl~~~~y~~~l~~~g~~~~ 210 (279)
T PHA03411 139 INTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP-YYDGTMKSNKYLKWSKQTGLVTY 210 (279)
T ss_pred cCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc-cccccCCHHHHHHHHHhcCcEec
Confidence 321 2456777889999998877644321 10000112366778999999854
No 133
>PRK04457 spermidine synthase; Provisional
Probab=96.80 E-value=0.0097 Score=53.93 Aligned_cols=94 Identities=9% Similarity=0.077 Sum_probs=64.3
Q ss_pred CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhC--CCCeEEEeccCCC-CCCCCCceeEEEecc
Q 023870 5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQC--DPQIITQASSLSQ-LPVESFSIDTVLSIS 67 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~--~~~v~~~~~d~~~-lp~~~~sfD~V~s~~ 67 (276)
+...+||+|+.|.+.-+..+. +.|++.|++..... ..++.++.+|+.. +.-..++||+|+.-.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 456789999888765322221 78888888765432 3568888898753 232346899999742
Q ss_pred c-cccC----ChHHHHHHHHHhccCCcEEEEEecCC
Q 023870 68 S-SHEL----PGDQLLEEISRVLKPGGTILIYKKLT 98 (276)
Q Consensus 68 ~-l~~~----~~~~~l~ei~rvLKPgG~l~i~~~~~ 98 (276)
. .... ...++++++.++|+|||+|++..+..
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 1 1111 22799999999999999999976653
No 134
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.78 E-value=0.018 Score=55.92 Aligned_cols=93 Identities=18% Similarity=0.154 Sum_probs=63.4
Q ss_pred CCCCCcEEEEccCCCCcHHHH---------------HHHHHHHHHHhhhhCCC-CeEEEeccCCCCC--CCCCceeEEEe
Q 023870 4 GKMQSAVLALSEDKILPVSAV---------------LNAIRDLGDEAVEQCDP-QIITQASSLSQLP--VESFSIDTVLS 65 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~v---------------~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp--~~~~sfD~V~s 65 (276)
++.|++||++..+.+.-...+ .+.|++.+++++...+. ++.++.+|+..++ ++ ++||+|++
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~ 326 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILV 326 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEE
Confidence 467889999988876422111 15667777777766654 3888999987763 33 78999997
Q ss_pred cccc------ccCC----------------h-HHHHHHHHHhccCCcEEEEEecC
Q 023870 66 ISSS------HELP----------------G-DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 66 ~~~l------~~~~----------------~-~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
.... .+.+ . ..+|.+++++|||||+|+.++-.
T Consensus 327 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 327 DAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred cCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 4321 1000 0 35799999999999999977644
No 135
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.77 E-value=0.0074 Score=52.42 Aligned_cols=119 Identities=18% Similarity=0.188 Sum_probs=67.6
Q ss_pred CCCCCCCcEEEEccCCCCcHHHH-------------------------HHHHHHHHHHhhhhCCCCeEEEeccCCCCCCC
Q 023870 2 DTGKMQSAVLALSEDKILPVSAV-------------------------LNAIRDLGDEAVEQCDPQIITQASSLSQLPVE 56 (276)
Q Consensus 2 ~~~~~g~~vL~v~~~~~~~~~~v-------------------------~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~ 56 (276)
..+|+|+.|..+|.|.+-=-+.+ ...|...+++.. . -+++.+-..+-.++ +
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~-~--aN~e~~~~~~~A~~-~ 119 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV-Y--ANVEVIGKPLVALG-A 119 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh-h--hhhhhhCCcccccC-C
Confidence 46899999999999875210101 133333333321 1 12223333344444 4
Q ss_pred CCceeEEEeccccccC------Ch--HHHHHHHHHhccCCcEEEEEecCCCC---chhH----HHHHHHHHHHHHHCCCc
Q 023870 57 SFSIDTVLSISSSHEL------PG--DQLLEEISRVLKPGGTILIYKKLTSD---KGDV----DKAISALEGKLLLAGFL 121 (276)
Q Consensus 57 ~~sfD~V~s~~~l~~~------~~--~~~l~ei~rvLKPgG~l~i~~~~~~~---~~~~----~~~~~~l~~~l~laGF~ 121 (276)
.+..|+++.....|-+ +. ..+.+++++.|||||.+.+.++.... ..+. +.....+..+...+||.
T Consensus 120 pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFk 199 (238)
T COG4798 120 PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFK 199 (238)
T ss_pred CCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcce
Confidence 5566666654433222 22 78999999999999999999986421 1110 01123566788899998
Q ss_pred chh
Q 023870 122 DAQ 124 (276)
Q Consensus 122 ~v~ 124 (276)
-..
T Consensus 200 l~a 202 (238)
T COG4798 200 LEA 202 (238)
T ss_pred eee
Confidence 543
No 136
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.73 E-value=0.00042 Score=57.90 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=43.8
Q ss_pred eEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 023870 43 IITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 43 v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
+.++.-.....+|.++|.|+|++..++.|+.- ..++++++|+|||||+|-+..+.
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence 33333333466899999999999888777653 78999999999999999999775
No 137
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.65 E-value=0.013 Score=54.98 Aligned_cols=92 Identities=21% Similarity=0.083 Sum_probs=59.9
Q ss_pred CCCcEEEEccCCCCcHHH-------------HHHHHHHHHHHhhhh-------C----CCCeEEEeccCCCC----CCCC
Q 023870 6 MQSAVLALSEDKILPVSA-------------VLNAIRDLGDEAVEQ-------C----DPQIITQASSLSQL----PVES 57 (276)
Q Consensus 6 ~g~~vL~v~~~~~~~~~~-------------v~~~m~~~A~~~~~~-------~----~~~v~~~~~d~~~l----p~~~ 57 (276)
.+..||++..|.+..+.. +...-++.|++|..+ . .....++.+|.... -+++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 789999999987765332 224445556666511 1 12356777766432 1333
Q ss_pred --CceeEEEeccccccCC-h----HHHHHHHHHhccCCcEEEEEecC
Q 023870 58 --FSIDTVLSISSSHELP-G----DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 58 --~sfD~V~s~~~l~~~~-~----~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
..||+|-+.+++|+.- + +.+|..+.+.|||||+|+.+.+.
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 5999999999998843 2 67999999999999999999875
No 138
>PRK00536 speE spermidine synthase; Provisional
Probab=96.61 E-value=0.02 Score=52.03 Aligned_cols=106 Identities=13% Similarity=0.095 Sum_probs=67.7
Q ss_pred CCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhh-----hCCCCeEEEeccCCCCCCCCCceeEEEecccc
Q 023870 7 QSAVLALSEDKILPVSAVL------------NAIRDLGDEAVE-----QCDPQIITQASSLSQLPVESFSIDTVLSISSS 69 (276)
Q Consensus 7 g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~-----~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l 69 (276)
=.+||+++.|-+.-++.+. +.+++.+++-.. -.+++++.+.. +. .-..++||+|+.=..
T Consensus 73 pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~~~~~~fDVIIvDs~- 148 (262)
T PRK00536 73 LKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--DLDIKKYDLIICLQE- 148 (262)
T ss_pred CCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--hccCCcCCEEEEcCC-
Confidence 3689999998877777666 667777766322 23556665532 21 112468999997532
Q ss_pred ccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcch
Q 023870 70 HELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA 123 (276)
Q Consensus 70 ~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v 123 (276)
.++++++.++|+|+|||.++.+..++... ......+.+.+.. .|..+
T Consensus 149 ---~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~---~~~~~~i~~~l~~-~F~~v 195 (262)
T PRK00536 149 ---PDIHKIDGLKRMLKEDGVFISVAKHPLLE---HVSMQNALKNMGD-FFSIA 195 (262)
T ss_pred ---CChHHHHHHHHhcCCCcEEEECCCCcccC---HHHHHHHHHHHHh-hCCce
Confidence 34788999999999999999886543211 2222344445554 56543
No 139
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.61 E-value=0.012 Score=54.63 Aligned_cols=88 Identities=15% Similarity=0.170 Sum_probs=61.0
Q ss_pred CcEEEEccCCCCcHHH--------------HHHHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEecccc--
Q 023870 8 SAVLALSEDKILPVSA--------------VLNAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISSS-- 69 (276)
Q Consensus 8 ~~vL~v~~~~~~~~~~--------------v~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~l-- 69 (276)
.+||+++.|.+.-+.. +.+.|++.|++++...+. ++.++.+|+.. +++..+||+|+++-..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCC
Confidence 5799998888643221 227788888887766554 48899999754 3345689999986311
Q ss_pred -----------ccCC-----------h--HHHHHHHHHhccCCcEEEEEec
Q 023870 70 -----------HELP-----------G--DQLLEEISRVLKPGGTILIYKK 96 (276)
Q Consensus 70 -----------~~~~-----------~--~~~l~ei~rvLKPgG~l~i~~~ 96 (276)
++.+ . ..+++++.+.|+|||++++...
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1111 1 4678899999999999998653
No 140
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=96.52 E-value=0.017 Score=53.46 Aligned_cols=111 Identities=19% Similarity=0.120 Sum_probs=66.5
Q ss_pred CCCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870 4 GKMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH 70 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~ 70 (276)
.+.|.+||+++.|.++-+-... +..++.|++++...+....+.... ...+....||+|+++-...
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~--~~~~~~~~~dlvvANI~~~ 236 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSL--SEDLVEGKFDLVVANILAD 236 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC--TSCTCCS-EEEEEEES-HH
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE--ecccccccCCEEEECCCHH
Confidence 5678999999999875421111 455666777666555442222222 2233458999999975332
Q ss_pred cCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhh
Q 023870 71 ELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI 126 (276)
Q Consensus 71 ~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~ 126 (276)
-+ ..++..+.+.|+|||+|+++-... .... .+...+.. ||..++..
T Consensus 237 vL--~~l~~~~~~~l~~~G~lIlSGIl~---~~~~----~v~~a~~~-g~~~~~~~ 282 (295)
T PF06325_consen 237 VL--LELAPDIASLLKPGGYLILSGILE---EQED----EVIEAYKQ-GFELVEER 282 (295)
T ss_dssp HH--HHHHHHCHHHEEEEEEEEEEEEEG---GGHH----HHHHHHHT-TEEEEEEE
T ss_pred HH--HHHHHHHHHhhCCCCEEEEccccH---HHHH----HHHHHHHC-CCEEEEEE
Confidence 11 567888999999999999986542 1111 44445554 99865543
No 141
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.51 E-value=0.013 Score=51.29 Aligned_cols=41 Identities=32% Similarity=0.590 Sum_probs=36.7
Q ss_pred CCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 023870 57 SFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 57 ~~sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
..+||+|++++++|..+- +.+++...++|+|||.|+++-+.
T Consensus 100 ~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF 143 (204)
T PF06080_consen 100 PESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPF 143 (204)
T ss_pred CCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCc
Confidence 569999999999998874 88999999999999999998764
No 142
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=96.48 E-value=0.021 Score=51.78 Aligned_cols=90 Identities=17% Similarity=0.202 Sum_probs=58.7
Q ss_pred CCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhC-----CCCeEEEeccCCC-CCCCCCceeEEEe
Q 023870 6 MQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQC-----DPQIITQASSLSQ-LPVESFSIDTVLS 65 (276)
Q Consensus 6 ~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~-----~~~v~~~~~d~~~-lp~~~~sfD~V~s 65 (276)
...+||+++.|.+.-++.+. +.|++.+++..... ..++.++.+|+.. +.-..++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 45599999888764333332 55677776654321 2456677676533 2223578999998
Q ss_pred ccccccCC-----hHHHHHHHHHhccCCcEEEEEe
Q 023870 66 ISSSHELP-----GDQLLEEISRVLKPGGTILIYK 95 (276)
Q Consensus 66 ~~~l~~~~-----~~~~l~ei~rvLKPgG~l~i~~ 95 (276)
......-+ ..++++.+++.|+|||.+++..
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 55422211 3688999999999999999874
No 143
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.46 E-value=0.0053 Score=54.02 Aligned_cols=82 Identities=16% Similarity=0.185 Sum_probs=59.4
Q ss_pred EEeccCCCCCCC---CCceeEEEeccccccCCh----HHHHHHHHHhccCCcE-----EEEEecCCCCchhHHHHHHHHH
Q 023870 45 TQASSLSQLPVE---SFSIDTVLSISSSHELPG----DQLLEEISRVLKPGGT-----ILIYKKLTSDKGDVDKAISALE 112 (276)
Q Consensus 45 ~~~~d~~~lp~~---~~sfD~V~s~~~l~~~~~----~~~l~ei~rvLKPgG~-----l~i~~~~~~~~~~~~~~~~~l~ 112 (276)
..+.|+-+.|+| ++.||+|.++.++.++|+ -+.+..+++.|+|+|. |++..+.+-....--...+.+.
T Consensus 87 I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~ 166 (219)
T PF11968_consen 87 ILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLR 166 (219)
T ss_pred ceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHH
Confidence 355677777764 779999999999999996 5699999999999999 9888876421100000112556
Q ss_pred HHHHHCCCcchhhh
Q 023870 113 GKLLLAGFLDAQRI 126 (276)
Q Consensus 113 ~~l~laGF~~v~~~ 126 (276)
..+..-||..+...
T Consensus 167 ~im~~LGf~~~~~~ 180 (219)
T PF11968_consen 167 EIMESLGFTRVKYK 180 (219)
T ss_pred HHHHhCCcEEEEEE
Confidence 67899999987654
No 144
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.43 E-value=0.013 Score=54.94 Aligned_cols=113 Identities=21% Similarity=0.143 Sum_probs=77.6
Q ss_pred CCCCCCCcEEEEccCCCCc------------HHHHHHHHHHHHHHhhhhCCCC-eEEEec-cCCCCCCCCCceeEEEecc
Q 023870 2 DTGKMQSAVLALSEDKILP------------VSAVLNAIRDLGDEAVEQCDPQ-IITQAS-SLSQLPVESFSIDTVLSIS 67 (276)
Q Consensus 2 ~~~~~g~~vL~v~~~~~~~------------~~~v~~~m~~~A~~~~~~~~~~-v~~~~~-d~~~lp~~~~sfD~V~s~~ 67 (276)
..++.|..||+=-.|.+.= ..++.+.|.+-|+.+....+.. ..+... |+..+||++++||.|++=.
T Consensus 193 a~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 193 ARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred hccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 3567777777643333211 2366789999888888776643 444444 9999999999999999832
Q ss_pred c------ccc--CCh--HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhh
Q 023870 68 S------SHE--LPG--DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI 126 (276)
Q Consensus 68 ~------l~~--~~~--~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~ 126 (276)
. ..- +.. .++|..++++||+||++++..+. .-...+...||..+...
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~------------~~~~~~~~~~f~v~~~~ 329 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR------------DPRHELEELGFKVLGRF 329 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC------------cchhhHhhcCceEEEEE
Confidence 1 111 223 78999999999999999998763 11335777888865543
No 145
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=96.40 E-value=0.013 Score=49.12 Aligned_cols=89 Identities=9% Similarity=0.023 Sum_probs=61.3
Q ss_pred CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870 4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE 71 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~ 71 (276)
+..|..||.++.|.+.-...+. +.|.+.++++... ..++.++.+|+.++++++..||.|+++..+|.
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~-~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~~ 89 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA-ADNLTVIHGDALKFDLPKLQPYKVVGNLPYNI 89 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc-CCCEEEEECchhcCCccccCCCEEEECCCccc
Confidence 3567789999998864433232 5677777766543 34688999999999988878999999876654
Q ss_pred CChHHHHHHHHHh--ccCCcEEEEEe
Q 023870 72 LPGDQLLEEISRV--LKPGGTILIYK 95 (276)
Q Consensus 72 ~~~~~~l~ei~rv--LKPgG~l~i~~ 95 (276)
. ...+..+.+. +.++|.|+++.
T Consensus 90 ~--~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 90 S--TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred H--HHHHHHHHhcCCCcceEEEEEEH
Confidence 2 3444444433 44788887765
No 146
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.29 E-value=0.046 Score=49.10 Aligned_cols=113 Identities=12% Similarity=0.087 Sum_probs=70.4
Q ss_pred CCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhh-----CCCCeEEEeccCCCC-CCCCC-ceeEE
Q 023870 5 KMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQ-----CDPQIITQASSLSQL-PVESF-SIDTV 63 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~-----~~~~v~~~~~d~~~l-p~~~~-sfD~V 63 (276)
+...+||+++.|.+..++.+. +.+++.+++-... .+.+++.+.+|+... .-... .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 356789999988876555443 6777777664432 346788888887532 22233 89999
Q ss_pred Eecccc-----ccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCC
Q 023870 64 LSISSS-----HELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGF 120 (276)
Q Consensus 64 ~s~~~l-----~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF 120 (276)
+.-..- ..+-..++++.+.+.|+|||.+++........ ......+.+.++....
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~---~~~~~~i~~tl~~~F~ 213 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLH---PELFKSILKTLRSVFP 213 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTT---HHHHHHHHHHHHTTSS
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccc---hHHHHHHHHHHHHhCC
Confidence 973221 11224799999999999999999887443211 1222344455555444
No 147
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.26 E-value=0.047 Score=54.16 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=70.3
Q ss_pred CCcEEEEccCCCCcHHH--------------HHHHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEeccccc
Q 023870 7 QSAVLALSEDKILPVSA--------------VLNAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISSSH 70 (276)
Q Consensus 7 g~~vL~v~~~~~~~~~~--------------v~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~l~ 70 (276)
+.+||.++.|.+.-+.. +.+.|++.|++++...+. ++.++.+|+.. +++.++||+|+++-...
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCC
Confidence 46799998888643221 227788888887765553 47888888743 34466899999953211
Q ss_pred --------------cCC------------h-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcch
Q 023870 71 --------------ELP------------G-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA 123 (276)
Q Consensus 71 --------------~~~------------~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v 123 (276)
+.+ . ..++.++.++|+|||.|++..... .. +.+...+...||..+
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~-----q~---~~v~~~~~~~g~~~~ 289 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK-----QE---EAVTQIFLDHGYNIE 289 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc-----hH---HHHHHHHHhcCCCce
Confidence 100 0 346678889999999998754321 11 145555677898755
Q ss_pred hh
Q 023870 124 QR 125 (276)
Q Consensus 124 ~~ 125 (276)
..
T Consensus 290 ~~ 291 (506)
T PRK01544 290 SV 291 (506)
T ss_pred EE
Confidence 43
No 148
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=96.18 E-value=0.076 Score=45.77 Aligned_cols=109 Identities=12% Similarity=0.059 Sum_probs=71.9
Q ss_pred CCCCCCcEEEEccCCCCc-HHHHH-------------HHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEecc
Q 023870 3 TGKMQSAVLALSEDKILP-VSAVL-------------NAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSIS 67 (276)
Q Consensus 3 ~~~~g~~vL~v~~~~~~~-~~~v~-------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~ 67 (276)
.+++|+.+++|+.|.+.- ++-+. +.+++..++++...+. ++..+.+++-..--...+||.|+..-
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGG 110 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGG 110 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECC
Confidence 367899999998888632 22221 4456666666655554 48888888864321223899999876
Q ss_pred ccccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCc
Q 023870 68 SSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL 121 (276)
Q Consensus 68 ~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~ 121 (276)
. - .-+.+|+.+...|||||+++..-... + ....+...+...||.
T Consensus 111 g-~--~i~~ile~~~~~l~~ggrlV~naitl---E----~~~~a~~~~~~~g~~ 154 (187)
T COG2242 111 G-G--NIEEILEAAWERLKPGGRLVANAITL---E----TLAKALEALEQLGGR 154 (187)
T ss_pred C-C--CHHHHHHHHHHHcCcCCeEEEEeecH---H----HHHHHHHHHHHcCCc
Confidence 5 2 23689999999999999999776442 1 112444567777774
No 149
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.09 E-value=0.025 Score=51.25 Aligned_cols=80 Identities=24% Similarity=0.248 Sum_probs=51.0
Q ss_pred EEeccCCCC-CCCC-----CceeEEEeccccccCC----h-HHHHHHHHHhccCCcEEEEEecCCCCc--------hhHH
Q 023870 45 TQASSLSQL-PVES-----FSIDTVLSISSSHELP----G-DQLLEEISRVLKPGGTILIYKKLTSDK--------GDVD 105 (276)
Q Consensus 45 ~~~~d~~~l-p~~~-----~sfD~V~s~~~l~~~~----~-~~~l~ei~rvLKPgG~l~i~~~~~~~~--------~~~~ 105 (276)
++..|+.+. |+.. ..||+|++++.+...- . ..+++.+.+.|||||.|++......+. ..+.
T Consensus 138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~ 217 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLP 217 (256)
T ss_dssp EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---
T ss_pred EEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEeccccc
Confidence 455677654 3433 2599999987654322 2 789999999999999999887654321 1122
Q ss_pred HHHHHHHHHHHHCCCcchh
Q 023870 106 KAISALEGKLLLAGFLDAQ 124 (276)
Q Consensus 106 ~~~~~l~~~l~laGF~~v~ 124 (276)
-..+.++..|..+||....
T Consensus 218 l~ee~v~~al~~aG~~i~~ 236 (256)
T PF01234_consen 218 LNEEFVREALEEAGFDIED 236 (256)
T ss_dssp B-HHHHHHHHHHTTEEEEE
T ss_pred CCHHHHHHHHHHcCCEEEe
Confidence 2235778889999997543
No 150
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.09 E-value=0.081 Score=46.93 Aligned_cols=124 Identities=23% Similarity=0.251 Sum_probs=76.9
Q ss_pred CCCCCCcEEEEccCCCCcHHH---HH----------------HHHHHHHHHhhhhCCCCeEEEeccCCCC---CCCCCce
Q 023870 3 TGKMQSAVLALSEDKILPVSA---VL----------------NAIRDLGDEAVEQCDPQIITQASSLSQL---PVESFSI 60 (276)
Q Consensus 3 ~~~~g~~vL~v~~~~~~~~~~---v~----------------~~m~~~A~~~~~~~~~~v~~~~~d~~~l---p~~~~sf 60 (276)
-+++|.+||.++-..++.+.. ++ ..++++|++| .+|.-+.+|+..- ..--+.+
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-----~NIiPIl~DAr~P~~Y~~lv~~V 144 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-----PNIIPILEDARHPEKYRMLVEMV 144 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-----TTEEEEES-TTSGGGGTTTS--E
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-----CceeeeeccCCChHHhhcccccc
Confidence 367899999998877665443 33 2445667766 7788788888642 1123489
Q ss_pred eEEEeccccccCCh--HHHHHHHHHhccCCcEEEEEecCCC--CchhHHHHHHHHHHHHHHCCCcchhhhhcccccCC
Q 023870 61 DTVLSISSSHELPG--DQLLEEISRVLKPGGTILIYKKLTS--DKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPA 134 (276)
Q Consensus 61 D~V~s~~~l~~~~~--~~~l~ei~rvLKPgG~l~i~~~~~~--~~~~~~~~~~~l~~~l~laGF~~v~~~~~~~~~~~ 134 (276)
|+|++-.+ .++ +-++......||+||.+++.--... +..+...+++.-...|+..||...+.....|+..+
T Consensus 145 DvI~~DVa---Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy~~d 219 (229)
T PF01269_consen 145 DVIFQDVA---QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLEPYERD 219 (229)
T ss_dssp EEEEEE-S---STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTTSTT
T ss_pred cEEEecCC---ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccCCCCCC
Confidence 99988543 233 5677778889999999998864321 11233455666667788889998777766555433
No 151
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.05 E-value=0.0098 Score=54.22 Aligned_cols=84 Identities=18% Similarity=0.195 Sum_probs=58.5
Q ss_pred CeEEEeccCCCCCCCC---CceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCchh--------HHHHHH
Q 023870 42 QIITQASSLSQLPVES---FSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDKGD--------VDKAIS 109 (276)
Q Consensus 42 ~v~~~~~d~~~lp~~~---~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~--------~~~~~~ 109 (276)
++....||+..+..++ ++||+|++.+-+---++ -+.+..|+++|||||.++=.-+..-+..+ +.-+++
T Consensus 145 ~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~e 224 (270)
T PF07942_consen 145 NLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLE 224 (270)
T ss_pred ceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHH
Confidence 4677788887776555 79999999876655556 78999999999999966533221111111 333467
Q ss_pred HHHHHHHHCCCcchhh
Q 023870 110 ALEGKLLLAGFLDAQR 125 (276)
Q Consensus 110 ~l~~~l~laGF~~v~~ 125 (276)
++.......||..+..
T Consensus 225 Ei~~l~~~~GF~~~~~ 240 (270)
T PF07942_consen 225 EIKELIEKLGFEIEKE 240 (270)
T ss_pred HHHHHHHHCCCEEEEE
Confidence 8888888999997654
No 152
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=96.03 E-value=0.024 Score=51.31 Aligned_cols=83 Identities=16% Similarity=0.213 Sum_probs=53.4
Q ss_pred CCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC
Q 023870 6 MQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP 73 (276)
Q Consensus 6 ~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~ 73 (276)
...++|+|+-|-+.--..|. ..|+.+.++ .+-.+.. ..++.-.+..||+|.+.+.+-...
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~----kg~~vl~----~~~w~~~~~~fDvIscLNvLDRc~ 165 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSK----KGFTVLD----IDDWQQTDFKFDVISCLNVLDRCD 165 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHh----CCCeEEe----hhhhhccCCceEEEeehhhhhccC
Confidence 34568999766642112222 445444333 3333322 222333356899999999986655
Q ss_pred h-HHHHHHHHHhccCCcEEEEEec
Q 023870 74 G-DQLLEEISRVLKPGGTILIYKK 96 (276)
Q Consensus 74 ~-~~~l~ei~rvLKPgG~l~i~~~ 96 (276)
. ..+|++|++.|+|+|++++...
T Consensus 166 ~P~~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 166 RPLTLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred CHHHHHHHHHHHhCCCCEEEEEEE
Confidence 4 8899999999999999988754
No 153
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=96.03 E-value=0.074 Score=46.08 Aligned_cols=56 Identities=21% Similarity=0.256 Sum_probs=42.0
Q ss_pred CCeEEEeccCCC-CC--CCCCceeEEEeccccccC---------ChHHHHHHHHHhccCCcEEEEEec
Q 023870 41 PQIITQASSLSQ-LP--VESFSIDTVLSISSSHEL---------PGDQLLEEISRVLKPGGTILIYKK 96 (276)
Q Consensus 41 ~~v~~~~~d~~~-lp--~~~~sfD~V~s~~~l~~~---------~~~~~l~ei~rvLKPgG~l~i~~~ 96 (276)
.++.++.+++.. ++ ++++++|.|+.++.--|. ..+.++.+++++|+|||.|.+.+-
T Consensus 67 ~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 67 KNVRFLRGDARELLRRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp SSEEEEES-CTTHHHHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred cceEEEEccHHHHHhhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 458899999877 33 567999999998853332 237899999999999999999874
No 154
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.97 E-value=0.013 Score=52.25 Aligned_cols=116 Identities=15% Similarity=0.111 Sum_probs=77.4
Q ss_pred CcEEEEccCCCCc---HHH---------HHHHHHHHHHHhhhhCCCCeEEEeccCC-CCC-CCCCceeEEEeccccccCC
Q 023870 8 SAVLALSEDKILP---VSA---------VLNAIRDLGDEAVEQCDPQIITQASSLS-QLP-VESFSIDTVLSISSSHELP 73 (276)
Q Consensus 8 ~~vL~v~~~~~~~---~~~---------v~~~m~~~A~~~~~~~~~~v~~~~~d~~-~lp-~~~~sfD~V~s~~~l~~~~ 73 (276)
.++|+++.|.++. +++ +++.|+++|+++--.. ...++++. -++ ...+.||+|++.-++.++-
T Consensus 127 ~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD----~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG 202 (287)
T COG4976 127 RRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYD----TLYVAEAVLFLEDLTQERFDLIVAADVLPYLG 202 (287)
T ss_pred ceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchH----HHHHHHHHHHhhhccCCcccchhhhhHHHhhc
Confidence 4567777777654 343 4488999988763211 12334443 233 5678999999999888888
Q ss_pred h-HHHHHHHHHhccCCcEEEEEecCCCC-----chhHHH---HHHHHHHHHHHCCCcchhhhh
Q 023870 74 G-DQLLEEISRVLKPGGTILIYKKLTSD-----KGDVDK---AISALEGKLLLAGFLDAQRIQ 127 (276)
Q Consensus 74 ~-~~~l~ei~rvLKPgG~l~i~~~~~~~-----~~~~~~---~~~~l~~~l~laGF~~v~~~~ 127 (276)
+ +.++.-+...|+|||.|.|+.-.... +.+..+ .-+.+...+...||..++...
T Consensus 203 ~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ 265 (287)
T COG4976 203 ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIED 265 (287)
T ss_pred chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeec
Confidence 7 88999999999999999998643221 112111 123566778999998766543
No 155
>PLN02823 spermine synthase
Probab=95.92 E-value=0.031 Score=52.56 Aligned_cols=90 Identities=16% Similarity=0.233 Sum_probs=61.9
Q ss_pred CCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhh-----CCCCeEEEeccCCC-CCCCCCceeEEEe
Q 023870 6 MQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQ-----CDPQIITQASSLSQ-LPVESFSIDTVLS 65 (276)
Q Consensus 6 ~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~-----~~~~v~~~~~d~~~-lp~~~~sfD~V~s 65 (276)
...+||+++.|.+.-++.+. +.+++.|++.... .+.+++++.+|+.. +.-..++||+|+.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 34689999888764433332 7778888776532 24568888888754 3445678999998
Q ss_pred cccc-------ccCChHHHHH-HHHHhccCCcEEEEEe
Q 023870 66 ISSS-------HELPGDQLLE-EISRVLKPGGTILIYK 95 (276)
Q Consensus 66 ~~~l-------~~~~~~~~l~-ei~rvLKPgG~l~i~~ 95 (276)
-..- ..+-..++++ .+.+.|+|||.++++.
T Consensus 183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 4321 1223468888 8999999999988764
No 156
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=95.91 E-value=0.06 Score=49.71 Aligned_cols=89 Identities=22% Similarity=0.229 Sum_probs=61.1
Q ss_pred CCcEEEEccCCCCcHH--------------HHHHHHHHHHHHhhhhCCCCe-EEEeccCCCCCCCCCceeEEEecccccc
Q 023870 7 QSAVLALSEDKILPVS--------------AVLNAIRDLGDEAVEQCDPQI-ITQASSLSQLPVESFSIDTVLSISSSHE 71 (276)
Q Consensus 7 g~~vL~v~~~~~~~~~--------------~v~~~m~~~A~~~~~~~~~~v-~~~~~d~~~lp~~~~sfD~V~s~~~l~~ 71 (276)
+-+||+++.|-+.-.. ++....++.|++.+...++.. .+..+++-+ +..+ +||+|+++-.+|.
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-~v~~-kfd~IisNPPfh~ 236 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE-PVEG-KFDLIISNPPFHA 236 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc-cccc-cccEEEeCCCccC
Confidence 3389999998864321 111445666777766655553 444555433 4444 9999999988875
Q ss_pred CCh------HHHHHHHHHhccCCcEEEEEecC
Q 023870 72 LPG------DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 72 ~~~------~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
=.. .+++.+..+.|++||.|.|.-..
T Consensus 237 G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~ 268 (300)
T COG2813 237 GKAVVHSLAQEIIAAAARHLKPGGELWIVANR 268 (300)
T ss_pred CcchhHHHHHHHHHHHHHhhccCCEEEEEEcC
Confidence 322 58999999999999999888763
No 157
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=95.89 E-value=0.014 Score=53.15 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=44.7
Q ss_pred eEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEe
Q 023870 43 IITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYK 95 (276)
Q Consensus 43 v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~ 95 (276)
|.|.+.++..-++..+.||+|+|-+++-++.. .+++..++..|+|||.|++-.
T Consensus 186 V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 186 VRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred cEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 67777777665545678999999999988875 789999999999999999865
No 158
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=95.85 E-value=0.022 Score=53.02 Aligned_cols=94 Identities=17% Similarity=0.070 Sum_probs=63.7
Q ss_pred CCCCCcEEEEccCCCCcH-------------HHHHHHHHHHHHHhhhhC-------CCCeEEEeccCC------CCCCCC
Q 023870 4 GKMQSAVLALSEDKILPV-------------SAVLNAIRDLGDEAVEQC-------DPQIITQASSLS------QLPVES 57 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~-------------~~v~~~m~~~A~~~~~~~-------~~~v~~~~~d~~------~lp~~~ 57 (276)
.++++-||.++.|.+..+ .++.+..++.|++|...- -..+.|+.+|-. .+++++
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 356666777666655432 144466666676665321 123677777643 345567
Q ss_pred CceeEEEeccccccC-Ch----HHHHHHHHHhccCCcEEEEEecC
Q 023870 58 FSIDTVLSISSSHEL-PG----DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 58 ~sfD~V~s~~~l~~~-~~----~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
.+||+|-+-+++|+. .+ +.+|+.+.+.|||||+|+-+.+.
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence 779999998888873 32 67899999999999999988865
No 159
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=95.84 E-value=0.14 Score=46.06 Aligned_cols=105 Identities=14% Similarity=0.130 Sum_probs=66.2
Q ss_pred CcEEEEccCCCCcHH--------------HHHHHHHHHHHHhhhhCCCCeEEEeccCCC-CCC-CCCceeEEEeccccc-
Q 023870 8 SAVLALSEDKILPVS--------------AVLNAIRDLGDEAVEQCDPQIITQASSLSQ-LPV-ESFSIDTVLSISSSH- 70 (276)
Q Consensus 8 ~~vL~v~~~~~~~~~--------------~v~~~m~~~A~~~~~~~~~~v~~~~~d~~~-lp~-~~~sfD~V~s~~~l~- 70 (276)
.+||++..|.+.-+- ++.+.|++.|++++...+ +.++++|+.+ ++- ....||+|+++-...
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~--~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG--GTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 478999888763211 122678888887765544 4677888764 221 135799999875321
Q ss_pred -------------cCC--------h-----HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcc
Q 023870 71 -------------ELP--------G-----DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD 122 (276)
Q Consensus 71 -------------~~~--------~-----~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~ 122 (276)
+.+ + ..++..+.++|||||+|++..... .. ..+...+...||..
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~----~~----~~v~~~l~~~g~~~ 235 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER----QA----PLAVEAFARAGLIA 235 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc----hH----HHHHHHHHHCCCCc
Confidence 100 0 366777789999999999876431 11 14556677788863
No 160
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=95.83 E-value=0.056 Score=47.71 Aligned_cols=89 Identities=20% Similarity=0.192 Sum_probs=60.2
Q ss_pred CCCCCcEEEEccCCCCcHHHHH------------HHHHHHH-HHhhh-h-----------CCCCeEEEeccCCCCCCCC-
Q 023870 4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLG-DEAVE-Q-----------CDPQIITQASSLSQLPVES- 57 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A-~~~~~-~-----------~~~~v~~~~~d~~~lp~~~- 57 (276)
.+++.+||+...|.+..+.-+. +..++.+ +++.. . ...+|.+.++|+-+++-..
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~ 114 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV 114 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH
T ss_pred CCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc
Confidence 5677889999998875533222 4444444 22111 0 1224788999998886543
Q ss_pred CceeEEEeccccccCCh---HHHHHHHHHhccCCcEEE
Q 023870 58 FSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTIL 92 (276)
Q Consensus 58 ~sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~ 92 (276)
+.||+|+=...++-++. +...+.++++|+|||+++
T Consensus 115 g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~l 152 (218)
T PF05724_consen 115 GKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGL 152 (218)
T ss_dssp HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEE
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEE
Confidence 47999998888888875 789999999999999943
No 161
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.72 E-value=0.0051 Score=48.47 Aligned_cols=37 Identities=22% Similarity=0.519 Sum_probs=29.4
Q ss_pred ceeEEEeccccccCC----h---HHHHHHHHHhccCCcEEEEEe
Q 023870 59 SIDTVLSISSSHELP----G---DQLLEEISRVLKPGGTILIYK 95 (276)
Q Consensus 59 sfD~V~s~~~l~~~~----~---~~~l~ei~rvLKPgG~l~i~~ 95 (276)
.||+|+|.++.-|++ | ..+++.+++.|+|||.|++..
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 499999988877765 2 568999999999999999764
No 162
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.65 E-value=0.047 Score=50.00 Aligned_cols=87 Identities=15% Similarity=0.313 Sum_probs=50.1
Q ss_pred CcEEEEccCCCCcHHHHH-----------------HHHHHHHHHhhh---hCCCCeEEEeccCCCCCCCCCceeEEEecc
Q 023870 8 SAVLALSEDKILPVSAVL-----------------NAIRDLGDEAVE---QCDPQIITQASSLSQLPVESFSIDTVLSIS 67 (276)
Q Consensus 8 ~~vL~v~~~~~~~~~~v~-----------------~~m~~~A~~~~~---~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~ 67 (276)
.+|+.|+.|. .|...+. +...+++++-+. ..+..+.|+.+|+...+..-..||+|+...
T Consensus 122 ~rVaFIGSGP-LPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 122 SRVAFIGSGP-LPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp -EEEEE---S-S-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred ceEEEEcCCC-cchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 3899999987 6743333 344555655444 234568999999988877777999998644
Q ss_pred cc--ccCChHHHHHHHHHhccCCcEEEEEe
Q 023870 68 SS--HELPGDQLLEEISRVLKPGGTILIYK 95 (276)
Q Consensus 68 ~l--~~~~~~~~l~ei~rvLKPgG~l~i~~ 95 (276)
.. ..-+-.+++.++.+.++||..+++..
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 22 11223899999999999999999884
No 163
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=95.62 E-value=0.048 Score=50.09 Aligned_cols=88 Identities=18% Similarity=0.192 Sum_probs=64.8
Q ss_pred cEEEEccCCCCcHHHHH--------------HHHHHHHHHhhhhC-----CCCeEEEeccCCCC-CCCCCceeEEEeccc
Q 023870 9 AVLALSEDKILPVSAVL--------------NAIRDLGDEAVEQC-----DPQIITQASSLSQL-PVESFSIDTVLSISS 68 (276)
Q Consensus 9 ~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~~~~-----~~~v~~~~~d~~~l-p~~~~sfD~V~s~~~ 68 (276)
+||+|+.|.+.-++.+. +.+++.+++..... .+++..+.+|.-+. .-...+||+|+.-..
T Consensus 79 ~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~t 158 (282)
T COG0421 79 RVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDST 158 (282)
T ss_pred eEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcCC
Confidence 89999999887666555 78888888865432 36688888887544 322338999998543
Q ss_pred cc-----cCChHHHHHHHHHhccCCcEEEEEec
Q 023870 69 SH-----ELPGDQLLEEISRVLKPGGTILIYKK 96 (276)
Q Consensus 69 l~-----~~~~~~~l~ei~rvLKPgG~l~i~~~ 96 (276)
-. .+...++++.++|.|+++|.++.+..
T Consensus 159 dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~ 191 (282)
T COG0421 159 DPVGPAEALFTEEFYEGCRRALKEDGIFVAQAG 191 (282)
T ss_pred CCCCcccccCCHHHHHHHHHhcCCCcEEEEecC
Confidence 22 22248999999999999999999843
No 164
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=95.49 E-value=0.075 Score=45.89 Aligned_cols=113 Identities=19% Similarity=0.131 Sum_probs=72.1
Q ss_pred CCCcEEEEccCCCCcHH--------------HHHHHHHHHHHHhhhhCCCC--eEEEeccCCCCCCCCCceeEEEeccc-
Q 023870 6 MQSAVLALSEDKILPVS--------------AVLNAIRDLGDEAVEQCDPQ--IITQASSLSQLPVESFSIDTVLSISS- 68 (276)
Q Consensus 6 ~g~~vL~v~~~~~~~~~--------------~v~~~m~~~A~~~~~~~~~~--v~~~~~d~~~lp~~~~sfD~V~s~~~- 68 (276)
.-++||+++.|-+.-+. +..+...++|+..++..+.. |+|.+.|+.+-.+-...||+|+---+
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence 34488888776542221 22366666666655555443 99999999987888899999986332
Q ss_pred ----ccc-CCh---HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhh
Q 023870 69 ----SHE-LPG---DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI 126 (276)
Q Consensus 69 ----l~~-~~~---~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~ 126 (276)
++- -+. ...+..+.++|+|||+|+|..=.. +. ++|.....-.||.-....
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~-T~-------dELv~~f~~~~f~~~~tv 204 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF-TK-------DELVEEFENFNFEYLSTV 204 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc-cH-------HHHHHHHhcCCeEEEEee
Confidence 221 111 346778899999999999875321 11 255556666667654433
No 165
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=95.39 E-value=0.085 Score=39.97 Aligned_cols=56 Identities=36% Similarity=0.504 Sum_probs=43.0
Q ss_pred eEEEeccCCC--CCCCC-CceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCC
Q 023870 43 IITQASSLSQ--LPVES-FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLT 98 (276)
Q Consensus 43 v~~~~~d~~~--lp~~~-~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~ 98 (276)
+.+..++... +++.. ..||++......++......+.++.++|+|+|.+++.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 100 VDFVVADALGGVLPFEDSASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred eEEEEeccccCCCCCCCCCceeEEeeeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 5677777765 78887 59999943444444434789999999999999999998764
No 166
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=95.36 E-value=0.058 Score=48.00 Aligned_cols=88 Identities=14% Similarity=0.131 Sum_probs=60.7
Q ss_pred CCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCC--CeEEEeccCCCC-C-C----CCCcee
Q 023870 5 KMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDP--QIITQASSLSQL-P-V----ESFSID 61 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~l-p-~----~~~sfD 61 (276)
....+||-++.+.+..+-.+. +.+.+.|++.....+. ++.++.+++.+. + + +..+||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 456678888776664311111 6777788887776654 488999988653 2 1 246899
Q ss_pred EEEeccccccCCh-HHHHHHHHHhccCCcEEEEEe
Q 023870 62 TVLSISSSHELPG-DQLLEEISRVLKPGGTILIYK 95 (276)
Q Consensus 62 ~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~ 95 (276)
+|+.-..- +. ...+.++.+.|||||.+++-+
T Consensus 147 ~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 147 FAFVDADK---PNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEEECCCH---HHHHHHHHHHHHhcCCCeEEEEEc
Confidence 99885321 22 578899999999999988765
No 167
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=95.16 E-value=0.21 Score=42.99 Aligned_cols=84 Identities=26% Similarity=0.351 Sum_probs=56.2
Q ss_pred cEEEEccCCCCcHHHHH-----------HHHH---HHHHHhhhhCCCC-eEEEeccCCCCCCCCCceeEEEeccccccCC
Q 023870 9 AVLALSEDKILPVSAVL-----------NAIR---DLGDEAVEQCDPQ-IITQASSLSQLPVESFSIDTVLSISSSHELP 73 (276)
Q Consensus 9 ~vL~v~~~~~~~~~~v~-----------~~m~---~~A~~~~~~~~~~-v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~ 73 (276)
++++|+.|.+.|.-.+. +.+. ...+.-+...++. +.++.+++++ +....+||+|++.... +
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~---~ 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVA---P 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSS---S
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhc---C
Confidence 79999999999843222 1111 1112222333444 8899999999 6668899999997642 1
Q ss_pred hHHHHHHHHHhccCCcEEEEEec
Q 023870 74 GDQLLEEISRVLKPGGTILIYKK 96 (276)
Q Consensus 74 ~~~~l~ei~rvLKPgG~l~i~~~ 96 (276)
-..++.-+.+.|++||++++.-.
T Consensus 127 l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 127 LDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp HHHHHHHHGGGEEEEEEEEEEES
T ss_pred HHHHHHHHHHhcCCCCEEEEEcC
Confidence 25788889999999999998764
No 168
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=95.08 E-value=0.072 Score=47.11 Aligned_cols=93 Identities=12% Similarity=0.095 Sum_probs=56.8
Q ss_pred CCCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEEEeccCCCC--CCCCCceeEEEecccc
Q 023870 5 KMQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIITQASSLSQL--PVESFSIDTVLSISSS 69 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~~~~d~~~l--p~~~~sfD~V~s~~~l 69 (276)
..|-+||=|+=|.++-..-++ +...++-+...-.+..+|..+.+.-++. .+++.+||.|+.-.-.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 357788888766654211121 2222323222222224466666666543 3779999999985433
Q ss_pred ccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870 70 HELPG-DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 70 ~~~~~-~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
.+..+ ..+.+.+.|.|||+|+|.+.+..
T Consensus 180 e~yEdl~~~hqh~~rLLkP~gv~SyfNg~ 208 (271)
T KOG1709|consen 180 ELYEDLRHFHQHVVRLLKPEGVFSYFNGL 208 (271)
T ss_pred hHHHHHHHHHHHHhhhcCCCceEEEecCc
Confidence 33444 78889999999999999877643
No 169
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=95.01 E-value=0.14 Score=45.66 Aligned_cols=67 Identities=13% Similarity=0.144 Sum_probs=50.4
Q ss_pred HHHHHhhhhCCC-CeEEEeccCCCC---CCCCCceeEEEeccccccC---------ChHHHHHHHHHhccCCcEEEEEec
Q 023870 30 DLGDEAVEQCDP-QIITQASSLSQL---PVESFSIDTVLSISSSHEL---------PGDQLLEEISRVLKPGGTILIYKK 96 (276)
Q Consensus 30 ~~A~~~~~~~~~-~v~~~~~d~~~l---p~~~~sfD~V~s~~~l~~~---------~~~~~l~ei~rvLKPgG~l~i~~~ 96 (276)
..+.+++.+.++ ++..+..|+..+ =+++++.|-|+.++.=-|. ....+++.+.++|||||.|.+.+-
T Consensus 86 ~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 86 AKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred HHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 334455666677 889998988754 2455599999998864332 237899999999999999998874
No 170
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=94.63 E-value=0.027 Score=45.42 Aligned_cols=72 Identities=25% Similarity=0.343 Sum_probs=46.8
Q ss_pred CCeEEEeccCCC-CCCCCCceeEEEec-cccccCC---hHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHH
Q 023870 41 PQIITQASSLSQ-LPVESFSIDTVLSI-SSSHELP---GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKL 115 (276)
Q Consensus 41 ~~v~~~~~d~~~-lp~~~~sfD~V~s~-~~l~~~~---~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l 115 (276)
..+....+|+.. ++--...||+|+.- ++...-+ +.+++++++|.++|||.|...... ..+++.|
T Consensus 31 v~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a-----------~~Vr~~L 99 (124)
T PF05430_consen 31 VTLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSSA-----------GAVRRAL 99 (124)
T ss_dssp EEEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--B-----------HHHHHHH
T ss_pred EEEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeech-----------HHHHHHH
Confidence 346677788753 34334799999873 3322222 278999999999999998865533 1677899
Q ss_pred HHCCCcch
Q 023870 116 LLAGFLDA 123 (276)
Q Consensus 116 ~laGF~~v 123 (276)
..+||...
T Consensus 100 ~~aGF~v~ 107 (124)
T PF05430_consen 100 QQAGFEVE 107 (124)
T ss_dssp HHCTEEEE
T ss_pred HHcCCEEE
Confidence 99999853
No 171
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=94.61 E-value=0.072 Score=52.03 Aligned_cols=57 Identities=30% Similarity=0.465 Sum_probs=47.2
Q ss_pred CCeEEEeccCCCCCCCCCceeEEEeccccccCC---------h--HHHHHHHHHhccCCcEEEEEecC
Q 023870 41 PQIITQASSLSQLPVESFSIDTVLSISSSHELP---------G--DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 41 ~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~---------~--~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
..+.+...++..+.|++++||+|+....++.+. . ...+.+++|+|+|||+++..+..
T Consensus 96 ~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 96 PEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred cceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 557899999999999999999999977665432 1 45678999999999999888773
No 172
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=94.59 E-value=0.4 Score=46.15 Aligned_cols=93 Identities=16% Similarity=0.090 Sum_probs=61.2
Q ss_pred CCCCcEEEEccCCCCc-HH------------HHHHHHHHHHHHhhhhCCC---CeEEEeccCCCCC--C--CCCceeEEE
Q 023870 5 KMQSAVLALSEDKILP-VS------------AVLNAIRDLGDEAVEQCDP---QIITQASSLSQLP--V--ESFSIDTVL 64 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~-~~------------~v~~~m~~~A~~~~~~~~~---~v~~~~~d~~~lp--~--~~~sfD~V~ 64 (276)
..|.+||.+..+.+.- +. ++.+.+++.|++++...+. ++.++++|+...- + ...+||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4578899998777532 11 1227788888887766553 4789999986541 2 245899999
Q ss_pred eccccccC---------Ch-HHHHHHHHHhccCCcEEEEEecC
Q 023870 65 SISSSHEL---------PG-DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 65 s~~~l~~~---------~~-~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
+.-....- .+ ..++....++|+|||.|+...-+
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 86432111 11 34555678999999999976643
No 173
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=94.56 E-value=0.043 Score=49.27 Aligned_cols=43 Identities=23% Similarity=0.448 Sum_probs=34.2
Q ss_pred CCCCCCceeEEEeccccccCC----h---HHHHHHHHHhccCCcEEEEEe
Q 023870 53 LPVESFSIDTVLSISSSHELP----G---DQLLEEISRVLKPGGTILIYK 95 (276)
Q Consensus 53 lp~~~~sfD~V~s~~~l~~~~----~---~~~l~ei~rvLKPgG~l~i~~ 95 (276)
+.+....||+|+|.+...|++ + ..+++.|++.|.|||+|++-.
T Consensus 160 l~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 160 LDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred hhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 356678999999977655543 3 789999999999999999654
No 174
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=94.39 E-value=0.3 Score=47.45 Aligned_cols=90 Identities=13% Similarity=0.107 Sum_probs=62.5
Q ss_pred CCCCCcEEEEccCCCCcHHHH------------HHHHHHHHHHhhhhCCC-CeEEEeccCCC----CCCCCCceeEEEec
Q 023870 4 GKMQSAVLALSEDKILPVSAV------------LNAIRDLGDEAVEQCDP-QIITQASSLSQ----LPVESFSIDTVLSI 66 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~~~~~~-~v~~~~~d~~~----lp~~~~sfD~V~s~ 66 (276)
+..|.+||++..|.+.-+..+ .+.|++.|++++...+. ++.++.+|+.+ +++.+++||+|++.
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 356789999999987542222 28888888887765554 48899999864 34556789999986
Q ss_pred cccccCChHHHHHHHHHhccCCcEEEEEec
Q 023870 67 SSSHELPGDQLLEEISRVLKPGGTILIYKK 96 (276)
Q Consensus 67 ~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~ 96 (276)
-..... ...+..+.+ ++|++.++++..
T Consensus 375 PPr~g~--~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 375 PPRAGA--AEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred cCCcCh--HHHHHHHHh-cCCCeEEEEEeC
Confidence 543322 355655555 699999998863
No 175
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=94.32 E-value=0.11 Score=44.26 Aligned_cols=69 Identities=22% Similarity=0.282 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhhhCCCC--eEEEeccCCCCCCCCCceeEEEecccccc-C------Ch--HHHHHHHHHhccCCcEEEEE
Q 023870 26 NAIRDLGDEAVEQCDPQ--IITQASSLSQLPVESFSIDTVLSISSSHE-L------PG--DQLLEEISRVLKPGGTILIY 94 (276)
Q Consensus 26 ~~m~~~A~~~~~~~~~~--v~~~~~d~~~lp~~~~sfD~V~s~~~l~~-~------~~--~~~l~ei~rvLKPgG~l~i~ 94 (276)
+.|++.|++++...+.. +.+.+.|+..+++.++++|+|++...+-. + .. ..+++++.|+|++ ..+++.
T Consensus 71 ~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~ 149 (179)
T PF01170_consen 71 PKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLT 149 (179)
T ss_dssp HHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEE
T ss_pred HHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEE
Confidence 46677777777666653 88999999999988899999999764321 1 11 5678899999999 334433
Q ss_pred e
Q 023870 95 K 95 (276)
Q Consensus 95 ~ 95 (276)
.
T Consensus 150 ~ 150 (179)
T PF01170_consen 150 T 150 (179)
T ss_dssp E
T ss_pred E
Confidence 3
No 176
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=94.27 E-value=0.043 Score=46.32 Aligned_cols=71 Identities=20% Similarity=0.258 Sum_probs=51.2
Q ss_pred CCceeEEEeccccccC------------ChHHHHHHHHHhccCCcEEEEEecCCC-C-chhHHHHHHHHHHHHHHCCCcc
Q 023870 57 SFSIDTVLSISSSHEL------------PGDQLLEEISRVLKPGGTILIYKKLTS-D-KGDVDKAISALEGKLLLAGFLD 122 (276)
Q Consensus 57 ~~sfD~V~s~~~l~~~------------~~~~~l~ei~rvLKPgG~l~i~~~~~~-~-~~~~~~~~~~l~~~l~laGF~~ 122 (276)
.++||.+.+..++.|+ .+...+.++.++|||||.|++..+.-. . .....++...++..+.+.||.-
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~ 140 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEW 140 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEE
Confidence 5679999998877553 126788999999999999999987532 1 1223344556677899999987
Q ss_pred hhhhh
Q 023870 123 AQRIQ 127 (276)
Q Consensus 123 v~~~~ 127 (276)
+....
T Consensus 141 i~tfs 145 (177)
T PF03269_consen 141 IDTFS 145 (177)
T ss_pred Eeeec
Confidence 76543
No 177
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=94.23 E-value=0.2 Score=51.61 Aligned_cols=93 Identities=13% Similarity=0.106 Sum_probs=62.3
Q ss_pred CCCCcEEEEccCCCCcHH-------------HHHHHHHHHHHHhhhhCCC---CeEEEeccCCCC-CCCCCceeEEEecc
Q 023870 5 KMQSAVLALSEDKILPVS-------------AVLNAIRDLGDEAVEQCDP---QIITQASSLSQL-PVESFSIDTVLSIS 67 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~-------------~v~~~m~~~A~~~~~~~~~---~v~~~~~d~~~l-p~~~~sfD~V~s~~ 67 (276)
..|.+||.+..+.+.-+- ++.+.+++.|++++...+. ++.++++|+.+. .-...+||+|++.-
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 357889998777753211 2237788888887765543 488999997542 11146899999853
Q ss_pred ccc-------c----CCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870 68 SSH-------E----LPG-DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 68 ~l~-------~----~~~-~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
... . ..+ ..++..+.++|+|||.|++....
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 210 1 112 56888899999999999887644
No 178
>PLN02672 methionine S-methyltransferase
Probab=93.68 E-value=0.66 Score=49.99 Aligned_cols=113 Identities=14% Similarity=0.030 Sum_probs=72.3
Q ss_pred CCcEEEEccCCCCcHH--------------HHHHHHHHHHHHhhhhCC-----------------CCeEEEeccCCCCCC
Q 023870 7 QSAVLALSEDKILPVS--------------AVLNAIRDLGDEAVEQCD-----------------PQIITQASSLSQLPV 55 (276)
Q Consensus 7 g~~vL~v~~~~~~~~~--------------~v~~~m~~~A~~~~~~~~-----------------~~v~~~~~d~~~lp~ 55 (276)
|.+||+++.|.+.-+- ++.+.+++.|++++...+ .++.++++|+.+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~- 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC- 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc-
Confidence 4578999888753211 222778888877765421 24889999986532
Q ss_pred CC--CceeEEEecccc---------------c------c-------C------Ch-----HHHHHHHHHhccCCcEEEEE
Q 023870 56 ES--FSIDTVLSISSS---------------H------E-------L------PG-----DQLLEEISRVLKPGGTILIY 94 (276)
Q Consensus 56 ~~--~sfD~V~s~~~l---------------~------~-------~------~~-----~~~l~ei~rvLKPgG~l~i~ 94 (276)
.. ..||+|+++-.. | | + .+ +.++.+..++|||||.+++-
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 32 269999996321 0 0 0 11 46777888899999999876
Q ss_pred ecCCCCchhHHHHHHHHH-HHHHHCCCcchhhhhc
Q 023870 95 KKLTSDKGDVDKAISALE-GKLLLAGFLDAQRIQL 128 (276)
Q Consensus 95 ~~~~~~~~~~~~~~~~l~-~~l~laGF~~v~~~~~ 128 (276)
.... ... .+. +.+...||..+..++.
T Consensus 278 iG~~-----q~~---~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 278 MGGR-----PGQ---AVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred ECcc-----HHH---HHHHHHHHHCCCCeeEEeee
Confidence 6431 122 455 4677799998776654
No 179
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=93.65 E-value=0.72 Score=41.39 Aligned_cols=115 Identities=16% Similarity=0.128 Sum_probs=63.0
Q ss_pred CCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCC---CCceeEEEecccc
Q 023870 6 MQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVE---SFSIDTVLSISSS 69 (276)
Q Consensus 6 ~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~---~~sfD~V~s~~~l 69 (276)
.|.++|+++|+--+.+.... +.+++.-++.+...+.+++.+..|+.+ |+| .+.||++++--..
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~-~LP~~~~~~fD~f~TDPPy 122 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRD-PLPEELRGKFDVFFTDPPY 122 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS----TTTSS-BSEEEE---S
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccc-cCCHHHhcCCCEEEeCCCC
Confidence 47789999988765533222 666676666666667889998898864 444 4789999985321
Q ss_pred ccCCh-HHHHHHHHHhccCCc-EEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhh
Q 023870 70 HELPG-DQLLEEISRVLKPGG-TILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125 (276)
Q Consensus 70 ~~~~~-~~~l~ei~rvLKPgG-~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~ 125 (276)
. ... .-+++.-...||.-| ..++.-... ......|..+++.+...||+....
T Consensus 123 T-~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~---~~s~~~~~~~Q~~l~~~gl~i~di 176 (243)
T PF01861_consen 123 T-PEGLKLFLSRGIEALKGEGCAGYFGFTHK---EASPDKWLEVQRFLLEMGLVITDI 176 (243)
T ss_dssp S-HHHHHHHHHHHHHTB-STT-EEEEEE-TT---T--HHHHHHHHHHHHTS--EEEEE
T ss_pred C-HHHHHHHHHHHHHHhCCCCceEEEEEecC---cCcHHHHHHHHHHHHHCCcCHHHH
Confidence 1 122 678889999999766 444433221 123445778888999999985443
No 180
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=93.35 E-value=0.42 Score=46.74 Aligned_cols=52 Identities=15% Similarity=0.288 Sum_probs=36.9
Q ss_pred CCCeEEEeccCCCCCCCCCceeEEEeccccccCC---hHHHHHHHHHhccCCcEEE
Q 023870 40 DPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTIL 92 (276)
Q Consensus 40 ~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~---~~~~l~ei~rvLKPgG~l~ 92 (276)
+..|+++.++++++..+. .+|+|+|-..-.... ..+.|....|.|||+|.++
T Consensus 240 ~~~V~vi~~d~r~v~lpe-kvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 240 GDKVTVIHGDMREVELPE-KVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp TTTEEEEES-TTTSCHSS--EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred CCeEEEEeCcccCCCCCC-ceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 456999999999998765 999999943211111 2678888999999999885
No 181
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=93.24 E-value=0.35 Score=46.06 Aligned_cols=117 Identities=17% Similarity=0.152 Sum_probs=78.6
Q ss_pred CCCCCCcEEEEccCCCCcHHHHH--------------HHHHHHHHHhh-----h---hCCCCeEEEeccCCCC-CCCCCc
Q 023870 3 TGKMQSAVLALSEDKILPVSAVL--------------NAIRDLGDEAV-----E---QCDPQIITQASSLSQL-PVESFS 59 (276)
Q Consensus 3 ~~~~g~~vL~v~~~~~~~~~~v~--------------~~m~~~A~~~~-----~---~~~~~v~~~~~d~~~l-p~~~~s 59 (276)
.++.--+||+++.|.++.++.+. +.|++.+++.. . -.++++.++..|+-+. --..+.
T Consensus 286 ~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~ 365 (508)
T COG4262 286 SVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADM 365 (508)
T ss_pred cccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccc
Confidence 35566789999988887766554 88999887321 1 1245688887877654 334569
Q ss_pred eeEEEecc------ccccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcc
Q 023870 60 IDTVLSIS------SSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD 122 (276)
Q Consensus 60 fD~V~s~~------~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~ 122 (276)
||.|+.-. ++--+.+.++..-+.|.|+++|.++++-.++-...+ ..| .+...++.+||..
T Consensus 366 fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~--vfw-~i~aTik~AG~~~ 431 (508)
T COG4262 366 FDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPR--VFW-RIDATIKSAGYRV 431 (508)
T ss_pred ccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCc--eee-eehhHHHhCccee
Confidence 99998733 222233478899999999999999998766532111 112 3456789999874
No 182
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=93.08 E-value=0.98 Score=39.89 Aligned_cols=110 Identities=20% Similarity=0.190 Sum_probs=68.2
Q ss_pred CCcEEEEccCCCCcHHHHH-----------HHHHH---HHHHhhhhCCCC-eEEEeccCCCCCCCCCceeEEEecccccc
Q 023870 7 QSAVLALSEDKILPVSAVL-----------NAIRD---LGDEAVEQCDPQ-IITQASSLSQLPVESFSIDTVLSISSSHE 71 (276)
Q Consensus 7 g~~vL~v~~~~~~~~~~v~-----------~~m~~---~A~~~~~~~~~~-v~~~~~d~~~lp~~~~sfD~V~s~~~l~~ 71 (276)
+.++++|+.|.+.|.-.+- +...+ .-+......+++ ++++.+++|++.-....||+|++.....
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 6899999999998843211 11111 123333345665 8999999998864322299999965321
Q ss_pred CChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchh
Q 023870 72 LPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ 124 (276)
Q Consensus 72 ~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~ 124 (276)
-..++.-....+|+||.++..-+.. ....+.+.+......||....
T Consensus 147 --L~~l~e~~~pllk~~g~~~~~k~~~-----~~~e~~e~~~a~~~~~~~~~~ 192 (215)
T COG0357 147 --LNVLLELCLPLLKVGGGFLAYKGLA-----GKDELPEAEKAILPLGGQVEK 192 (215)
T ss_pred --hHHHHHHHHHhcccCCcchhhhHHh-----hhhhHHHHHHHHHhhcCcEEE
Confidence 1456666788999999986554332 122233556667777776543
No 183
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=92.74 E-value=0.63 Score=45.83 Aligned_cols=94 Identities=14% Similarity=0.161 Sum_probs=56.8
Q ss_pred CCCCCcEEEEccCCCCcHHHHHH---------------HHHHHHHHhhhhCCCC-eEEEeccCCCCC-CCCCceeEEEe-
Q 023870 4 GKMQSAVLALSEDKILPVSAVLN---------------AIRDLGDEAVEQCDPQ-IITQASSLSQLP-VESFSIDTVLS- 65 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~v~~---------------~m~~~A~~~~~~~~~~-v~~~~~d~~~lp-~~~~sfD~V~s- 65 (276)
.++|++||++....+.=.-.+.. .-++..++++...+.. +.+...|...++ ...+.||.|+.
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 36889999986655422222222 2233345555555654 666667776553 33467999994
Q ss_pred ---ccc--c--------ccC-------Ch--HHHHHHHHHhccCCcEEEEEecC
Q 023870 66 ---ISS--S--------HEL-------PG--DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 66 ---~~~--l--------~~~-------~~--~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
+.. + .|- .. .++|...++.|||||+|+.++=+
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 211 1 111 01 56888899999999999877644
No 184
>PRK13699 putative methylase; Provisional
Probab=92.63 E-value=0.23 Score=44.06 Aligned_cols=72 Identities=17% Similarity=0.173 Sum_probs=43.2
Q ss_pred EEeccCCCC--CCCCCceeEEEeccccc----c-----C-----Ch--HHHHHHHHHhccCCcEEEEEecCCCCchhHHH
Q 023870 45 TQASSLSQL--PVESFSIDTVLSISSSH----E-----L-----PG--DQLLEEISRVLKPGGTILIYKKLTSDKGDVDK 106 (276)
Q Consensus 45 ~~~~d~~~l--p~~~~sfD~V~s~~~l~----~-----~-----~~--~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~ 106 (276)
...+|..++ .++++++|+|+.--... . + .. ..++.|++|+|||||.+++..... ...
T Consensus 4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~----~~~- 78 (227)
T PRK13699 4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN----RVD- 78 (227)
T ss_pred EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc----cHH-
Confidence 344555433 57788888888742110 0 0 01 578899999999999998643221 111
Q ss_pred HHHHHHHHHHHCCCcchh
Q 023870 107 AISALEGKLLLAGFLDAQ 124 (276)
Q Consensus 107 ~~~~l~~~l~laGF~~v~ 124 (276)
.+...+..+||.-.+
T Consensus 79 ---~~~~al~~~GF~l~~ 93 (227)
T PRK13699 79 ---RFMAAWKNAGFSVVG 93 (227)
T ss_pred ---HHHHHHHHCCCEEee
Confidence 333456788997543
No 185
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=92.37 E-value=0.87 Score=42.08 Aligned_cols=101 Identities=11% Similarity=0.123 Sum_probs=65.1
Q ss_pred HHHHHHHHHhhhhCCCC--eEEEeccCCCC-CCC--CCceeEEEeccccccCCh----HHHHHHHHHhccCCcEEEEEe-
Q 023870 26 NAIRDLGDEAVEQCDPQ--IITQASSLSQL-PVE--SFSIDTVLSISSSHELPG----DQLLEEISRVLKPGGTILIYK- 95 (276)
Q Consensus 26 ~~m~~~A~~~~~~~~~~--v~~~~~d~~~l-p~~--~~sfD~V~s~~~l~~~~~----~~~l~ei~rvLKPgG~l~i~~- 95 (276)
+.-++..++.+...++. ++|.++|+-+. .+. .-..++++.+-.+..+++ ...++-+++++.|||+++...
T Consensus 171 ~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQ 250 (311)
T PF12147_consen 171 PINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQ 250 (311)
T ss_pred HHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCC
Confidence 33445555655565654 48999987543 122 335688888777777776 446778999999999999876
Q ss_pred -cCCCC----------ch--hH---HHHHHHHHHHHHHCCCcchhhh
Q 023870 96 -KLTSD----------KG--DV---DKAISALEGKLLLAGFLDAQRI 126 (276)
Q Consensus 96 -~~~~~----------~~--~~---~~~~~~l~~~l~laGF~~v~~~ 126 (276)
|++.- .+ .+ +++-.++......|||..++..
T Consensus 251 PwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~~q~ 297 (311)
T PF12147_consen 251 PWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKIDQR 297 (311)
T ss_pred CCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchhhhe
Confidence 54321 00 00 1122467778899999977654
No 186
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=92.24 E-value=1.1 Score=43.18 Aligned_cols=90 Identities=13% Similarity=0.055 Sum_probs=60.3
Q ss_pred CCCCCcEEEEccCCCCcHHHH------------HHHHHHHHHHhhhhCCC-CeEEEeccCCCC----CCCCCceeEEEec
Q 023870 4 GKMQSAVLALSEDKILPVSAV------------LNAIRDLGDEAVEQCDP-QIITQASSLSQL----PVESFSIDTVLSI 66 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~~~~~~-~v~~~~~d~~~l----p~~~~sfD~V~s~ 66 (276)
++.+.+||++..|.+.-+-.+ .+.|++.|++++...+. ++.++.+|+... ++...+||+|+..
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 356788999999887442212 27788888887665554 488999998652 3445689999875
Q ss_pred cccccCChHHHHHHHHHhccCCcEEEEEe
Q 023870 67 SSSHELPGDQLLEEISRVLKPGGTILIYK 95 (276)
Q Consensus 67 ~~l~~~~~~~~l~ei~rvLKPgG~l~i~~ 95 (276)
-.-..+ ...+++.+.+ ++|++.++++.
T Consensus 370 PPr~G~-~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 370 PPRKGC-AAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred cCCCCC-CHHHHHHHHh-cCCCEEEEEcC
Confidence 432111 2567776654 89998887764
No 187
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=92.19 E-value=0.55 Score=44.17 Aligned_cols=52 Identities=19% Similarity=0.296 Sum_probs=42.2
Q ss_pred eEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 023870 43 IITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 43 v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
|..+.+|+-+- .|. -|+|+.-..+|+|.| -++|+.++..|+|||++++.+..
T Consensus 223 V~~v~gdmfq~-~P~--~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V 277 (342)
T KOG3178|consen 223 VEHVAGDMFQD-TPK--GDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENV 277 (342)
T ss_pred cceeccccccc-CCC--cCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 66677777533 343 349999999999997 78999999999999999999873
No 188
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=92.10 E-value=0.33 Score=42.99 Aligned_cols=70 Identities=20% Similarity=0.215 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhhhCCCC--eEEEe-ccCC-CCC-CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 023870 26 NAIRDLGDEAVEQCDPQ--IITQA-SSLS-QLP-VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT 98 (276)
Q Consensus 26 ~~m~~~A~~~~~~~~~~--v~~~~-~d~~-~lp-~~~~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~ 98 (276)
+.+.+.|++.....+.. ++.+. +|.. .+. +..++||+|+.=.. =.+ +.++..+.+.|+|||.+++-+...
T Consensus 94 ~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFIDad---K~~yp~~le~~~~lLr~GGliv~DNvl~ 169 (219)
T COG4122 94 EERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFIDAD---KADYPEYLERALPLLRPGGLIVADNVLF 169 (219)
T ss_pred HHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEEeCC---hhhCHHHHHHHHHHhCCCcEEEEeeccc
Confidence 78888898888777654 66666 3543 222 45789999998432 122 789999999999999999887654
No 189
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=92.00 E-value=1.1 Score=39.08 Aligned_cols=93 Identities=8% Similarity=-0.041 Sum_probs=58.4
Q ss_pred CCCCcEEEEccCCCCcH-HHHH------------HHHHHHHHHhhhhCCC-CeEEEeccCCC-CCCCCCceeEEEecccc
Q 023870 5 KMQSAVLALSEDKILPV-SAVL------------NAIRDLGDEAVEQCDP-QIITQASSLSQ-LPVESFSIDTVLSISSS 69 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~-~~v~------------~~m~~~A~~~~~~~~~-~v~~~~~d~~~-lp~~~~sfD~V~s~~~l 69 (276)
..|.+||++..|.+.-. ..+. +.+.+.+++.++..+. ++.++.+|+.. ++....+||+|++.-.+
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 35788999988875321 1111 4555666666655443 47888888764 33334579999997664
Q ss_pred ccCChHHHHHHHHH--hccCCcEEEEEecC
Q 023870 70 HELPGDQLLEEISR--VLKPGGTILIYKKL 97 (276)
Q Consensus 70 ~~~~~~~~l~ei~r--vLKPgG~l~i~~~~ 97 (276)
+.--...++..+.+ +|+|+|.+++....
T Consensus 132 ~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 132 RKGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 32112556666655 37999988877654
No 190
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=91.84 E-value=0.61 Score=46.31 Aligned_cols=55 Identities=13% Similarity=0.203 Sum_probs=42.3
Q ss_pred CeEEEeccCCCC--CCCCCceeEEEeccccccC---------ChHHHHHHHHHhccCCcEEEEEec
Q 023870 42 QIITQASSLSQL--PVESFSIDTVLSISSSHEL---------PGDQLLEEISRVLKPGGTILIYKK 96 (276)
Q Consensus 42 ~v~~~~~d~~~l--p~~~~sfD~V~s~~~l~~~---------~~~~~l~ei~rvLKPgG~l~i~~~ 96 (276)
++.++..++..+ -|+++++|.|+.++.--|. ..+.++..++++|||||.|.+.+-
T Consensus 398 N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 398 NFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred eEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 466666676533 3788999999998864442 238899999999999999998874
No 191
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=91.63 E-value=0.15 Score=50.06 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=36.8
Q ss_pred CCCCCCCCceeEEEeccccccCCh----HHHHHHHHHhccCCcEEEEEecC
Q 023870 51 SQLPVESFSIDTVLSISSSHELPG----DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 51 ~~lp~~~~sfD~V~s~~~l~~~~~----~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
|.++.=+.+||+|.+...+..+.+ ..+|-|+-|+|+|+|.++|.+..
T Consensus 419 E~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~ 469 (506)
T PF03141_consen 419 EAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV 469 (506)
T ss_pred hccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH
Confidence 445555789999998765544332 78999999999999999999854
No 192
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.57 E-value=0.98 Score=39.89 Aligned_cols=88 Identities=15% Similarity=0.183 Sum_probs=60.1
Q ss_pred CCCCCCcEEEEccCCCCcHHHHH-----------------HHHHHHHHHhhhhC-----------CCCeEEEeccCCCCC
Q 023870 3 TGKMQSAVLALSEDKILPVSAVL-----------------NAIRDLGDEAVEQC-----------DPQIITQASSLSQLP 54 (276)
Q Consensus 3 ~~~~g~~vL~v~~~~~~~~~~v~-----------------~~m~~~A~~~~~~~-----------~~~v~~~~~d~~~lp 54 (276)
.+++|.+.|.++.|.+- +..+. +.+.+++++++... ...+.++.+|....-
T Consensus 79 ~L~pG~s~LdvGsGSGY-Lt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~ 157 (237)
T KOG1661|consen 79 HLQPGASFLDVGSGSGY-LTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGY 157 (237)
T ss_pred hhccCcceeecCCCccH-HHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccC
Confidence 46788888888777652 11121 34445555544321 234678899998887
Q ss_pred CCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEec
Q 023870 55 VESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK 96 (276)
Q Consensus 55 ~~~~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~ 96 (276)
-+.+.||.|..-.+. ++..+++...|+|||++++-..
T Consensus 158 ~e~a~YDaIhvGAaa-----~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 158 AEQAPYDAIHVGAAA-----SELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred CccCCcceEEEccCc-----cccHHHHHHhhccCCeEEEeec
Confidence 778899999987543 3556889999999999997653
No 193
>PLN02476 O-methyltransferase
Probab=91.43 E-value=0.69 Score=42.45 Aligned_cols=89 Identities=12% Similarity=0.107 Sum_probs=60.2
Q ss_pred CCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCC--CeEEEeccCCC-CC-C----CCCcee
Q 023870 5 KMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDP--QIITQASSLSQ-LP-V----ESFSID 61 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~-lp-~----~~~sfD 61 (276)
....+||-++.+.+...-.+. +.+.+.|++.....+. +|.++.+++.+ |+ + ..++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 445677777777654321111 5667778877776665 48888898754 32 2 146899
Q ss_pred EEEeccccccCCh-HHHHHHHHHhccCCcEEEEEec
Q 023870 62 TVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKK 96 (276)
Q Consensus 62 ~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~ 96 (276)
.|+.=..- .. ...+..+.+.|+|||.+++-+.
T Consensus 197 ~VFIDa~K---~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 197 FAFVDADK---RMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred EEEECCCH---HHHHHHHHHHHHhcCCCcEEEEecC
Confidence 99985421 12 6788999999999999987654
No 194
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=91.28 E-value=2.3 Score=40.82 Aligned_cols=74 Identities=18% Similarity=0.184 Sum_probs=47.5
Q ss_pred CCCCCceeEEEeccccccCCh-HH--------------------------------------HHHHHHHhccCCcEEEEE
Q 023870 54 PVESFSIDTVLSISSSHELPG-DQ--------------------------------------LLEEISRVLKPGGTILIY 94 (276)
Q Consensus 54 p~~~~sfD~V~s~~~l~~~~~-~~--------------------------------------~l~ei~rvLKPgG~l~i~ 94 (276)
=||+++.+++++++++||+.. ++ +|+-=++-|+|||++++.
T Consensus 157 LfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~ 236 (386)
T PLN02668 157 LFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLV 236 (386)
T ss_pred ccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEE
Confidence 378999999999999999763 11 122224568899999999
Q ss_pred ecCCCCc----hh-HHHHH----HHHHHHHHHCCCcchhhhh
Q 023870 95 KKLTSDK----GD-VDKAI----SALEGKLLLAGFLDAQRIQ 127 (276)
Q Consensus 95 ~~~~~~~----~~-~~~~~----~~l~~~l~laGF~~v~~~~ 127 (276)
..+.... .+ ....| ......|..-|.++.+...
T Consensus 237 ~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~d 278 (386)
T PLN02668 237 CLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRD 278 (386)
T ss_pred EecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHh
Confidence 8664211 11 12222 2334567788888766553
No 195
>PHA03412 putative methyltransferase; Provisional
Probab=90.84 E-value=0.93 Score=40.70 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=50.9
Q ss_pred CCcEEEEccCCCCcHHHHH-----------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccc
Q 023870 7 QSAVLALSEDKILPVSAVL-----------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSS 69 (276)
Q Consensus 7 g~~vL~v~~~~~~~~~~v~-----------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l 69 (276)
+.+||++..|.+.-+..+. +.|.++|++.. ..+.++.+|+...++ +.+||+|+++-.+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~----~~~~~~~~D~~~~~~-~~~FDlIIsNPPY 124 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV----PEATWINADALTTEF-DTLFDMAISNPPF 124 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc----cCCEEEEcchhcccc-cCCccEEEECCCC
Confidence 5688888777763322222 44456665543 347788899987665 5689999997543
Q ss_pred ccC--------C---h--HHHHHHHHHhccCCcE
Q 023870 70 HEL--------P---G--DQLLEEISRVLKPGGT 90 (276)
Q Consensus 70 ~~~--------~---~--~~~l~ei~rvLKPgG~ 90 (276)
+-. + . ..++....|++++|+.
T Consensus 125 ~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 125 GKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 311 1 1 5688888887777765
No 196
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=90.50 E-value=0.75 Score=43.30 Aligned_cols=86 Identities=20% Similarity=0.213 Sum_probs=58.6
Q ss_pred CCCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCC--eEEEeccCCCCCCCCCceeEEEeccccc
Q 023870 6 MQSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQ--IITQASSLSQLPVESFSIDTVLSISSSH 70 (276)
Q Consensus 6 ~g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~--v~~~~~d~~~lp~~~~sfD~V~s~~~l~ 70 (276)
.+-.||+|+.|.+.- .-+- ..|.+.|++.+...+.. |+++++.++++.+|-..+|+|++-+.-+
T Consensus 60 ~dK~VlDVGcGtGIL-S~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGIL-SMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHH-HHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 345678888776532 1111 45556676665554443 7899999999888889999999976544
Q ss_pred cCC--h--HHHHHHHHHhccCCcEEE
Q 023870 71 ELP--G--DQLLEEISRVLKPGGTIL 92 (276)
Q Consensus 71 ~~~--~--~~~l~ei~rvLKPgG~l~ 92 (276)
++- + ..+|-.=-+.|+|||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEc
Confidence 332 1 455555568999999986
No 197
>PRK11524 putative methyltransferase; Provisional
Probab=90.39 E-value=0.33 Score=44.31 Aligned_cols=52 Identities=21% Similarity=0.209 Sum_probs=36.0
Q ss_pred EEEeccCCCC--CCCCCceeEEEeccccc-------c---C-----Ch--HHHHHHHHHhccCCcEEEEEe
Q 023870 44 ITQASSLSQL--PVESFSIDTVLSISSSH-------E---L-----PG--DQLLEEISRVLKPGGTILIYK 95 (276)
Q Consensus 44 ~~~~~d~~~l--p~~~~sfD~V~s~~~l~-------~---~-----~~--~~~l~ei~rvLKPgG~l~i~~ 95 (276)
.++.+|..+. .+++++||+|++.-.+. . + .. ..++.+++|+|||||.|++..
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 4566776553 46788999999842210 0 0 01 468999999999999999864
No 198
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=90.11 E-value=4 Score=37.37 Aligned_cols=102 Identities=23% Similarity=0.313 Sum_probs=64.0
Q ss_pred cEEEEccCCCCcHH--------------HHHHHHHHHHHHhhhhCCC-CeEEEeccCCCCCCCCCceeEEEecccc--c-
Q 023870 9 AVLALSEDKILPVS--------------AVLNAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSISSS--H- 70 (276)
Q Consensus 9 ~vL~v~~~~~~~~~--------------~v~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~~~~sfD~V~s~~~l--~- 70 (276)
+||+++.|.+.-+- ++.+..++.|++++...+. ++.++++++-. ++.. .||+|+++-.+ .
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~-~~~~-~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE-PLRG-KFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc-ccCC-ceeEEEeCCCCCCCc
Confidence 58888887764321 2226667788888777663 34555554432 2323 99999997421 0
Q ss_pred ----------c------------CCh-HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCC
Q 023870 71 ----------E------------LPG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGF 120 (276)
Q Consensus 71 ----------~------------~~~-~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF 120 (276)
+ +.- ..++.++.+.|+|||.+++...... . ..+...+...||
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q-----~---~~v~~~~~~~~~ 255 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQ-----G---EAVKALFEDTGF 255 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCc-----H---HHHHHHHHhcCC
Confidence 0 001 5678888999999999987764321 1 156667888884
No 199
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=89.61 E-value=9.3 Score=33.72 Aligned_cols=120 Identities=23% Similarity=0.223 Sum_probs=76.3
Q ss_pred CCCCCcEEEEccCCCCcHHHHH------------------HHHHHHHHHhhhhCCCCeEEEeccCCCC---CCCCCceeE
Q 023870 4 GKMQSAVLALSEDKILPVSAVL------------------NAIRDLGDEAVEQCDPQIITQASSLSQL---PVESFSIDT 62 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~v~------------------~~m~~~A~~~~~~~~~~v~~~~~d~~~l---p~~~~sfD~ 62 (276)
++.|.+||.++-..++.+.+|. ..++..+++| .++.-+.+|+..- .+-=+..|+
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R-----~Ni~PIL~DA~~P~~Y~~~Ve~VDv 148 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR-----PNIIPILEDARKPEKYRHLVEKVDV 148 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC-----CCceeeecccCCcHHhhhhcccccE
Confidence 6789999999877776655444 3345556655 5666677777532 122345888
Q ss_pred EEeccccccCCh--HHHHHHHHHhccCCcEEEEEecCCC--CchhHHHHHHHHHHHHHHCCCcchhhhhcccc
Q 023870 63 VLSISSSHELPG--DQLLEEISRVLKPGGTILIYKKLTS--DKGDVDKAISALEGKLLLAGFLDAQRIQLKSV 131 (276)
Q Consensus 63 V~s~~~l~~~~~--~~~l~ei~rvLKPgG~l~i~~~~~~--~~~~~~~~~~~l~~~l~laGF~~v~~~~~~~~ 131 (276)
|+.--+ .++ +-+...+...||+||.+++.--..+ +-.+...++......|...||...+.....|.
T Consensus 149 iy~DVA---Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~LePy 218 (231)
T COG1889 149 IYQDVA---QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLEPY 218 (231)
T ss_pred EEEecC---CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccCCc
Confidence 876322 233 5577788999999998777654322 22334555555566788899887766655443
No 200
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=89.40 E-value=3 Score=38.01 Aligned_cols=110 Identities=16% Similarity=0.174 Sum_probs=62.6
Q ss_pred CcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCC-C-eEEEeccC-CCCCCCCCceeEEEecccc
Q 023870 8 SAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDP-Q-IITQASSL-SQLPVESFSIDTVLSISSS 69 (276)
Q Consensus 8 ~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~-~-v~~~~~d~-~~lp~~~~sfD~V~s~~~l 69 (276)
.+||+++.|.++.+..+. +.|+++++.-...... . ..+..... +..++. ..|+|++.+++
T Consensus 35 ~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~s~~L 112 (274)
T PF09243_consen 35 RSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDLVIASYVL 112 (274)
T ss_pred ceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCcEEEEehhh
Confidence 478888888765433222 6677776664332211 1 11111111 122332 33999999998
Q ss_pred ccCCh---HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchh
Q 023870 70 HELPG---DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ 124 (276)
Q Consensus 70 ~~~~~---~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~ 124 (276)
..+++ ..+++.+.+.+.+ .|++.+++.. ... +....++..|...||..+.
T Consensus 113 ~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~--~Gf-~~i~~aR~~l~~~~~~v~A 165 (274)
T PF09243_consen 113 NELPSAARAELVRSLWNKTAP--VLVLVEPGTP--AGF-RRIAEARDQLLEKGAHVVA 165 (274)
T ss_pred hcCCchHHHHHHHHHHHhccC--cEEEEcCCCh--HHH-HHHHHHHHHHhhCCCceEC
Confidence 88876 4566666666554 9999998742 222 2233556667777777554
No 201
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=88.50 E-value=3.3 Score=37.19 Aligned_cols=65 Identities=8% Similarity=0.018 Sum_probs=47.4
Q ss_pred CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccccc
Q 023870 4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE 71 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~ 71 (276)
+..|+.||.++.|.+.-...+. +.|.+.++++... ..++.++.+|+..++++ .||.|+++..++.
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~-~~~v~ii~~D~~~~~~~--~~d~Vv~NlPy~i 103 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA-AGNVEIIEGDALKVDLP--EFNKVVSNLPYQI 103 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc-CCCEEEEEeccccCCch--hceEEEEcCCccc
Confidence 4578899999999975433333 5677777766543 34688999999988876 4899999877653
No 202
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=88.14 E-value=1.7 Score=37.97 Aligned_cols=69 Identities=20% Similarity=0.285 Sum_probs=47.8
Q ss_pred HHHHHHHHHhhhhCCC--CeEEEeccCCC-CC-C----CCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEec
Q 023870 26 NAIRDLGDEAVEQCDP--QIITQASSLSQ-LP-V----ESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKK 96 (276)
Q Consensus 26 ~~m~~~A~~~~~~~~~--~v~~~~~d~~~-lp-~----~~~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~ 96 (276)
+.+.+.|++.....+. +|+++.+++.+ ++ + +.+.||+|+.=..- .. ...+..+.+.|+|||.+++-+.
T Consensus 80 ~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 80 PERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADK---RNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp HHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTG---GGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccc---cchhhHHHHHhhhccCCeEEEEccc
Confidence 5566777776666554 58999998754 22 1 13589999985422 12 5678889999999999998764
Q ss_pred C
Q 023870 97 L 97 (276)
Q Consensus 97 ~ 97 (276)
.
T Consensus 157 l 157 (205)
T PF01596_consen 157 L 157 (205)
T ss_dssp T
T ss_pred c
Confidence 3
No 203
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=87.98 E-value=1.8 Score=40.92 Aligned_cols=86 Identities=14% Similarity=0.196 Sum_probs=56.1
Q ss_pred CCcEEEEccCCCCcH-HHH-----------HHHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEeccccccC
Q 023870 7 QSAVLALSEDKILPV-SAV-----------LNAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISSSHEL 72 (276)
Q Consensus 7 g~~vL~v~~~~~~~~-~~v-----------~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~ 72 (276)
|--||+|+.|.++-+ =.. ...|.++|++.+...++ +|.++.+.++++.+| +..|+|++--.-..+
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~mL 256 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGYML 256 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchhhh
Confidence 334688887775421 001 16788888887665543 488899999999886 579999984322222
Q ss_pred ChH---HHHHHHHHhccCCcEEEE
Q 023870 73 PGD---QLLEEISRVLKPGGTILI 93 (276)
Q Consensus 73 ~~~---~~l~ei~rvLKPgG~l~i 93 (276)
-++ +..-...|.|||.|.++=
T Consensus 257 ~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 257 VNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred hhHHHHHHHHHHHhhcCCCCcccC
Confidence 232 233346799999999863
No 204
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=87.53 E-value=1.4 Score=36.32 Aligned_cols=74 Identities=19% Similarity=0.198 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhhhhCCC--CeEEEeccCCCCC--CCCCceeEEEecccc-----ccCC---h--HHHHHHHHHhccCCc
Q 023870 24 VLNAIRDLGDEAVEQCDP--QIITQASSLSQLP--VESFSIDTVLSISSS-----HELP---G--DQLLEEISRVLKPGG 89 (276)
Q Consensus 24 v~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp--~~~~sfD~V~s~~~l-----~~~~---~--~~~l~ei~rvLKPgG 89 (276)
+++..++..+++..+.+. ++.++..+=+++. ++.+.+|+|+.+... |.+. + -.++..+.+.|+|||
T Consensus 7 IQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~lL~~gG 86 (140)
T PF06962_consen 7 IQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALELLKPGG 86 (140)
T ss_dssp S-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHHEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHhhccCC
Confidence 455666667777766543 4787777666664 233589999887642 2221 1 568899999999999
Q ss_pred EEEEEecC
Q 023870 90 TILIYKKL 97 (276)
Q Consensus 90 ~l~i~~~~ 97 (276)
.+.+....
T Consensus 87 ~i~iv~Y~ 94 (140)
T PF06962_consen 87 IITIVVYP 94 (140)
T ss_dssp EEEEEE--
T ss_pred EEEEEEeC
Confidence 99887643
No 205
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=86.69 E-value=3.4 Score=38.21 Aligned_cols=90 Identities=10% Similarity=-0.042 Sum_probs=59.3
Q ss_pred CCCcEEEEccCCCCcHH------------HHHHHHHHHHHHhhhhCCC-CeEEEeccCCCCCC-CCCceeEEEecccccc
Q 023870 6 MQSAVLALSEDKILPVS------------AVLNAIRDLGDEAVEQCDP-QIITQASSLSQLPV-ESFSIDTVLSISSSHE 71 (276)
Q Consensus 6 ~g~~vL~v~~~~~~~~~------------~v~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~-~~~sfD~V~s~~~l~~ 71 (276)
.+.+||++..|.+.-+. ++.+.|++.|++++...+. ++.++++|+..+.. ..+.||+|+..-.-..
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~G 252 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRRG 252 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCCC
Confidence 46789999988864321 2227888888887766665 48999999987543 3457999998744221
Q ss_pred CChHHHHHHHHHhccCCcEEEEEecC
Q 023870 72 LPGDQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 72 ~~~~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
+. ..++ ++...++|++.++++...
T Consensus 253 ~~-~~~~-~~l~~~~~~~ivyvsc~p 276 (315)
T PRK03522 253 IG-KELC-DYLSQMAPRFILYSSCNA 276 (315)
T ss_pred cc-HHHH-HHHHHcCCCeEEEEECCc
Confidence 21 2333 444557888888877644
No 206
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=85.94 E-value=1.5 Score=42.24 Aligned_cols=76 Identities=14% Similarity=0.120 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhhhhCCC---CeEEEeccCCCC-CC---CCCceeEEEec---cc---cccC---Ch-HHHHHHHHHhc
Q 023870 23 AVLNAIRDLGDEAVEQCDP---QIITQASSLSQL-PV---ESFSIDTVLSI---SS---SHEL---PG-DQLLEEISRVL 85 (276)
Q Consensus 23 ~v~~~m~~~A~~~~~~~~~---~v~~~~~d~~~l-p~---~~~sfD~V~s~---~~---l~~~---~~-~~~l~ei~rvL 85 (276)
++....++.|+++..-.+. .+.|+++|+-.. .. ....||+|+.= ++ -..+ .+ ..++....++|
T Consensus 247 D~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL 326 (393)
T COG1092 247 DLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLL 326 (393)
T ss_pred eccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHc
Confidence 4557778888887765553 378999987433 22 23499999972 11 1112 23 67888999999
Q ss_pred cCCcEEEEEecCC
Q 023870 86 KPGGTILIYKKLT 98 (276)
Q Consensus 86 KPgG~l~i~~~~~ 98 (276)
+|||.+++++-..
T Consensus 327 ~pgG~l~~~s~~~ 339 (393)
T COG1092 327 APGGTLVTSSCSR 339 (393)
T ss_pred CCCCEEEEEecCC
Confidence 9999999988664
No 207
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=85.86 E-value=1.7 Score=41.68 Aligned_cols=59 Identities=14% Similarity=0.236 Sum_probs=49.6
Q ss_pred CCeEEEeccCCCC--CCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecCCC
Q 023870 41 PQIITQASSLSQL--PVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKLTS 99 (276)
Q Consensus 41 ~~v~~~~~d~~~l--p~~~~sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~~~ 99 (276)
.++.++.+++.+. ..++++||.++.+-.+.|+++ .+.+++|.|.++|||++++......
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 4578888888754 257899999999888889886 7899999999999999999987643
No 208
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=85.76 E-value=3.1 Score=35.09 Aligned_cols=42 Identities=29% Similarity=0.437 Sum_probs=29.7
Q ss_pred CCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870 56 ESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 56 ~~~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
....||+|+..-.++.-.. +.+++-+.+.|+|+|.+++....
T Consensus 116 ~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 116 EPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp S-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred ccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 4568999999877665444 88999999999999997776643
No 209
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=85.61 E-value=5 Score=35.78 Aligned_cols=83 Identities=10% Similarity=0.057 Sum_probs=53.1
Q ss_pred CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCcee---EEEeccc
Q 023870 4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSID---TVLSISS 68 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD---~V~s~~~ 68 (276)
+..++.||.++.|.+.-...+. +.|.+.++++... ..++.++.+|+..++++ +|| +|+++..
T Consensus 27 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~-~~~v~v~~~D~~~~~~~--~~d~~~~vvsNlP 103 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL-YERLEVIEGDALKVDLP--DFPKQLKVVSNLP 103 (253)
T ss_pred CCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc-CCcEEEEECchhcCChh--HcCCcceEEEcCC
Confidence 3567899999999875433333 5666766655432 35688899999998876 577 7777766
Q ss_pred cccCChHHHHHHHHHhccCCcEEEE
Q 023870 69 SHELPGDQLLEEISRVLKPGGTILI 93 (276)
Q Consensus 69 l~~~~~~~~l~ei~rvLKPgG~l~i 93 (276)
+|. ....+.++.. .+++...+
T Consensus 104 y~i--~~~il~~ll~--~~~~~~~~ 124 (253)
T TIGR00755 104 YNI--SSPLIFKLLE--KPKFRLAV 124 (253)
T ss_pred hhh--HHHHHHHHhc--cCCCceEE
Confidence 542 2344444444 45544433
No 210
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=84.49 E-value=23 Score=32.23 Aligned_cols=118 Identities=19% Similarity=0.171 Sum_probs=68.6
Q ss_pred CCCCCcEEEEccCCCCcHH---HHH----------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCC----CCCce
Q 023870 4 GKMQSAVLALSEDKILPVS---AVL----------------NAIRDLGDEAVEQCDPQIITQASSLSQLPV----ESFSI 60 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~---~v~----------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~----~~~sf 60 (276)
+++|.+||.+.-...+.+. +++ ..++.+|++| .+|.-+.-|+.. |. --...
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-----tNiiPIiEDArh-P~KYRmlVgmV 227 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-----TNIIPIIEDARH-PAKYRMLVGMV 227 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-----CCceeeeccCCC-chheeeeeeeE
Confidence 6899999999877766543 333 4556778776 666666556543 22 12367
Q ss_pred eEEEeccccccCCh--HHHHHHHHHhccCCcEEEEEecCCCCc--hhHHHHHHHHHHHHHHCCCcchhhhhccc
Q 023870 61 DTVLSISSSHELPG--DQLLEEISRVLKPGGTILIYKKLTSDK--GDVDKAISALEGKLLLAGFLDAQRIQLKS 130 (276)
Q Consensus 61 D~V~s~~~l~~~~~--~~~l~ei~rvLKPgG~l~i~~~~~~~~--~~~~~~~~~l~~~l~laGF~~v~~~~~~~ 130 (276)
|+|++-.+ -++ +.+.-...-.||+||-|+++....-.. -.....++.-.+.|+..-|...+.+...|
T Consensus 228 DvIFaDva---qpdq~RivaLNA~~FLk~gGhfvisikancidstv~ae~vFa~Ev~klqee~lkP~EqvtLEP 298 (317)
T KOG1596|consen 228 DVIFADVA---QPDQARIVALNAQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQEEQLKPKEQVTLEP 298 (317)
T ss_pred EEEeccCC---CchhhhhhhhhhhhhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHhccCchheecccc
Confidence 88877432 123 344445778899999999987654211 11122233333445555555544443333
No 211
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=83.71 E-value=1.9 Score=38.85 Aligned_cols=69 Identities=13% Similarity=0.129 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhhhCC--CCeEEEeccCCC-CC-CC-----CCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEec
Q 023870 26 NAIRDLGDEAVEQCD--PQIITQASSLSQ-LP-VE-----SFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK 96 (276)
Q Consensus 26 ~~m~~~A~~~~~~~~--~~v~~~~~d~~~-lp-~~-----~~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~ 96 (276)
+.+.+.|++.....+ .+|.++.+++.+ |+ +. .++||+|+.=..-... ...+..+.+.|+|||.+++-+.
T Consensus 114 ~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDadK~~Y--~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 114 RENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKDNY--INYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred HHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCCHHHh--HHHHHHHHHhcCCCeEEEEcCC
Confidence 455667777766665 358899898754 23 11 3689999985321111 5678888999999999887543
No 212
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=82.62 E-value=1.9 Score=40.29 Aligned_cols=68 Identities=19% Similarity=0.225 Sum_probs=45.1
Q ss_pred CceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC-------CC--chhHHHHHHHHHHHHHHCCCcchhh
Q 023870 58 FSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT-------SD--KGDVDKAISALEGKLLLAGFLDAQR 125 (276)
Q Consensus 58 ~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~~~~-------~~--~~~~~~~~~~l~~~l~laGF~~v~~ 125 (276)
++||+|+..+-+..-++ -+.+..|+.+|||||.++=.-+.. +. ...+.-+.+.+.+-...-||.....
T Consensus 258 ~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke 335 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKE 335 (369)
T ss_pred CccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEe
Confidence 46999998765544455 789999999999999986432211 11 0112234557777788899986544
No 213
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=82.28 E-value=2.2 Score=43.63 Aligned_cols=69 Identities=19% Similarity=0.253 Sum_probs=47.9
Q ss_pred eEEEeccCCC-CCCCCCceeEEEe-ccccccCCh---HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHH
Q 023870 43 IITQASSLSQ-LPVESFSIDTVLS-ISSSHELPG---DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLL 117 (276)
Q Consensus 43 v~~~~~d~~~-lp~~~~sfD~V~s-~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~l 117 (276)
+....+|+.+ ++--...||+|+. -++...-+. .+++++|+|.++|||+|.-.+.. ..+++.|..
T Consensus 149 l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~a-----------~~vr~~l~~ 217 (662)
T PRK01747 149 LDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFTSA-----------GFVRRGLQE 217 (662)
T ss_pred EEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEeehH-----------HHHHHHHHH
Confidence 4466777753 3322356999986 333333333 78999999999999999866532 167778999
Q ss_pred CCCcc
Q 023870 118 AGFLD 122 (276)
Q Consensus 118 aGF~~ 122 (276)
+||..
T Consensus 218 ~GF~v 222 (662)
T PRK01747 218 AGFTV 222 (662)
T ss_pred cCCee
Confidence 99974
No 214
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=82.00 E-value=7.2 Score=33.99 Aligned_cols=86 Identities=15% Similarity=0.056 Sum_probs=48.1
Q ss_pred CCCCCCcEEEEccCCCCc---HHHH-----------HHHHHHHHHHhhhhCC--CCeEEEeccCCCCCCCCCceeEEEec
Q 023870 3 TGKMQSAVLALSEDKILP---VSAV-----------LNAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSI 66 (276)
Q Consensus 3 ~~~~g~~vL~v~~~~~~~---~~~v-----------~~~m~~~A~~~~~~~~--~~v~~~~~d~~~lp~~~~sfD~V~s~ 66 (276)
.++.|+.|++.-.|.+.= +... .+...+..++.+...+ ..+....+|...+.- ...||.|++.
T Consensus 98 ~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~ 176 (200)
T PF02475_consen 98 LVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMN 176 (200)
T ss_dssp C--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE-
T ss_pred cCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEEC
Confidence 467888899887777521 1110 0233344444333333 347888999987755 8899999987
Q ss_pred cccccCChHHHHHHHHHhccCCcEEE
Q 023870 67 SSSHELPGDQLLEEISRVLKPGGTIL 92 (276)
Q Consensus 67 ~~l~~~~~~~~l~ei~rvLKPgG~l~ 92 (276)
...+. ..+|..+.+.+|+||.+.
T Consensus 177 lp~~~---~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 177 LPESS---LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -TSSG---GGGHHHHHHHEEEEEEEE
T ss_pred ChHHH---HHHHHHHHHHhcCCcEEE
Confidence 64221 357889999999999875
No 215
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.65 E-value=2.6 Score=35.92 Aligned_cols=63 Identities=17% Similarity=0.336 Sum_probs=43.0
Q ss_pred CCCCceeEEEeccccccCC-hHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcch
Q 023870 55 VESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA 123 (276)
Q Consensus 55 ~~~~sfD~V~s~~~l~~~~-~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v 123 (276)
...++||+|++.--+..-. -..+..-|.+.|+|.|.-++..+..+ ++++....+....||...
T Consensus 99 ~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg------~sL~kF~de~~~~gf~v~ 162 (201)
T KOG3201|consen 99 QEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRG------QSLQKFLDEVGTVGFTVC 162 (201)
T ss_pred HhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCccc------chHHHHHHHHHhceeEEE
Confidence 3466999999864322111 16788999999999999877765432 233466677888888743
No 216
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=78.19 E-value=3.3 Score=38.17 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhhhCC---CCeEEEeccCCC-CC-C-CCCceeEEEec---cccccCC---h-HHHHHHHHHhccCCcE
Q 023870 24 VLNAIRDLGDEAVEQCD---PQIITQASSLSQ-LP-V-ESFSIDTVLSI---SSSHELP---G-DQLLEEISRVLKPGGT 90 (276)
Q Consensus 24 v~~~m~~~A~~~~~~~~---~~v~~~~~d~~~-lp-~-~~~sfD~V~s~---~~l~~~~---~-~~~l~ei~rvLKPgG~ 90 (276)
+...+++.++++....+ ..+.|+++|+-. +. + ....||+|+.= +.-..+. + ..++..+.++|+|||.
T Consensus 154 ~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~ 233 (286)
T PF10672_consen 154 SSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGL 233 (286)
T ss_dssp S-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 34777787877765544 247889888754 22 1 24689999982 2211111 3 6788899999999999
Q ss_pred EEEEecCC
Q 023870 91 ILIYKKLT 98 (276)
Q Consensus 91 l~i~~~~~ 98 (276)
|++..-++
T Consensus 234 l~~~scs~ 241 (286)
T PF10672_consen 234 LLTCSCSH 241 (286)
T ss_dssp EEEEE--T
T ss_pred EEEEcCCc
Confidence 98877654
No 217
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=77.48 E-value=44 Score=31.39 Aligned_cols=79 Identities=16% Similarity=0.187 Sum_probs=43.4
Q ss_pred ccCCCCCCCCCceeEEEeccccccCCh------H-------------------H---------------HHHHHHHhccC
Q 023870 48 SSLSQLPVESFSIDTVLSISSSHELPG------D-------------------Q---------------LLEEISRVLKP 87 (276)
Q Consensus 48 ~d~~~lp~~~~sfD~V~s~~~l~~~~~------~-------------------~---------------~l~ei~rvLKP 87 (276)
++...-=||++|.|+++|.+++||+.. . . +|+.=++-|+|
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~ 175 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP 175 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred chhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence 444444489999999999999999541 1 1 11122456889
Q ss_pred CcEEEEEecCCCCc----h---hHHHHHHHHHHHHHHCCCcchhhh
Q 023870 88 GGTILIYKKLTSDK----G---DVDKAISALEGKLLLAGFLDAQRI 126 (276)
Q Consensus 88 gG~l~i~~~~~~~~----~---~~~~~~~~l~~~l~laGF~~v~~~ 126 (276)
||++++...+.... . .+-......-..|..-|.++.+..
T Consensus 176 GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~ 221 (334)
T PF03492_consen 176 GGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKV 221 (334)
T ss_dssp EEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCC
T ss_pred CcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHh
Confidence 99999998764321 1 112223344456777888876554
No 218
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=77.19 E-value=11 Score=35.89 Aligned_cols=89 Identities=9% Similarity=-0.012 Sum_probs=57.6
Q ss_pred CCCcEEEEccCCCCcHH------------HHHHHHHHHHHHhhhhCCC-CeEEEeccCCCCCC-CCCceeEEEecccccc
Q 023870 6 MQSAVLALSEDKILPVS------------AVLNAIRDLGDEAVEQCDP-QIITQASSLSQLPV-ESFSIDTVLSISSSHE 71 (276)
Q Consensus 6 ~g~~vL~v~~~~~~~~~------------~v~~~m~~~A~~~~~~~~~-~v~~~~~d~~~lp~-~~~sfD~V~s~~~l~~ 71 (276)
.+.+||++..|.+.-+- ++.+.+++.|++++...+. ++.+..+|+..... ....||+|+..-....
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G 312 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRG 312 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCC
Confidence 45688999888863211 1126677777777665554 58899999865421 2246999988644322
Q ss_pred CChHHHHHHHHHhccCCcEEEEEec
Q 023870 72 LPGDQLLEEISRVLKPGGTILIYKK 96 (276)
Q Consensus 72 ~~~~~~l~ei~rvLKPgG~l~i~~~ 96 (276)
+ ...++..+. .++|++.++++..
T Consensus 313 ~-~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 313 I-GKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred C-cHHHHHHHH-hcCCCeEEEEEeC
Confidence 2 156666665 4799998888763
No 219
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=76.77 E-value=19 Score=30.95 Aligned_cols=58 Identities=19% Similarity=0.195 Sum_probs=46.1
Q ss_pred CCeEEEeccCCCCC-----CCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecCC
Q 023870 41 PQIITQASSLSQLP-----VESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKLT 98 (276)
Q Consensus 41 ~~v~~~~~d~~~lp-----~~~~sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~~ 98 (276)
..+.++.+|+..+. +....||.|+|...+-.++. -+.|+++...|.+||.|+-.+.++
T Consensus 94 p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 94 PGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred CCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 44567778777664 56778999999888777774 678999999999999998877663
No 220
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=76.48 E-value=5.8 Score=41.04 Aligned_cols=74 Identities=15% Similarity=0.142 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhhhhCCCC--eEEEeccCCCCCCCC--CceeEEEecccccc-CC---h-HHHHHHHHHhcc---CCcE
Q 023870 23 AVLNAIRDLGDEAVEQCDPQ--IITQASSLSQLPVES--FSIDTVLSISSSHE-LP---G-DQLLEEISRVLK---PGGT 90 (276)
Q Consensus 23 ~v~~~m~~~A~~~~~~~~~~--v~~~~~d~~~lp~~~--~sfD~V~s~~~l~~-~~---~-~~~l~ei~rvLK---PgG~ 90 (276)
++.+.|++.|++++...+.. +.+.++|+.+++.+. ++||+|+++-.+-. +. + ..++.++.+.|| +|+.
T Consensus 263 Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~ 342 (702)
T PRK11783 263 DIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWN 342 (702)
T ss_pred ECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCe
Confidence 34577888888887776653 789999998886543 57999999865421 21 1 344455444444 8988
Q ss_pred EEEEec
Q 023870 91 ILIYKK 96 (276)
Q Consensus 91 l~i~~~ 96 (276)
+++...
T Consensus 343 ~~llt~ 348 (702)
T PRK11783 343 AALFSS 348 (702)
T ss_pred EEEEeC
Confidence 877765
No 221
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=76.20 E-value=7.1 Score=37.41 Aligned_cols=73 Identities=11% Similarity=0.024 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhhhCCCC--eEEEeccCCCCCCCCCceeEEEecccccc-CCh--------HHHHHHHHHhccCCcEEE
Q 023870 24 VLNAIRDLGDEAVEQCDPQ--IITQASSLSQLPVESFSIDTVLSISSSHE-LPG--------DQLLEEISRVLKPGGTIL 92 (276)
Q Consensus 24 v~~~m~~~A~~~~~~~~~~--v~~~~~d~~~lp~~~~sfD~V~s~~~l~~-~~~--------~~~l~ei~rvLKPgG~l~ 92 (276)
+-..|++.|+.++..+++. |.|.++|+..++-+-..+|+|+++-..-. +.+ +.+.+.+.+.++--++++
T Consensus 262 id~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v 341 (381)
T COG0116 262 IDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYV 341 (381)
T ss_pred CCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEE
Confidence 3467888888888877766 99999999988654489999999864311 111 344445556666667777
Q ss_pred EEec
Q 023870 93 IYKK 96 (276)
Q Consensus 93 i~~~ 96 (276)
++..
T Consensus 342 ~tt~ 345 (381)
T COG0116 342 FTTS 345 (381)
T ss_pred EEcc
Confidence 7764
No 222
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=76.08 E-value=6.4 Score=35.62 Aligned_cols=64 Identities=8% Similarity=0.036 Sum_probs=45.6
Q ss_pred CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccc
Q 023870 4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSS 69 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l 69 (276)
++.|.+||.++.|.+.-...+. +.|.+.++++... .++.++++|+..+++++-.++.|+++..+
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~--~~v~~i~~D~~~~~~~~~~~~~vv~NlPY 115 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE--DNLTIIEGDALKVDLSELQPLKVVANLPY 115 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc--CceEEEEChhhcCCHHHcCcceEEEeCCc
Confidence 4678899999999864433222 6778877765432 56899999999988765336888887653
No 223
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=75.83 E-value=17 Score=34.43 Aligned_cols=94 Identities=17% Similarity=0.168 Sum_probs=52.9
Q ss_pred CCCCCcEEEEccCCCCcHHHHHHHHH----------------HHHHHhhhhCCCC-eEEEeccCCCCC---CCCCceeEE
Q 023870 4 GKMQSAVLALSEDKILPVSAVLNAIR----------------DLGDEAVEQCDPQ-IITQASSLSQLP---VESFSIDTV 63 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~v~~~m~----------------~~A~~~~~~~~~~-v~~~~~d~~~lp---~~~~sfD~V 63 (276)
.++|..||+.--..+.=...+...|. +..++++...+.. +.....|...++ ...+.||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 46778888875444322223333332 2233444455554 455566655443 223359999
Q ss_pred Eecc------cc------cc---------CCh--HHHHHHHHHhccCCcEEEEEecC
Q 023870 64 LSIS------SS------HE---------LPG--DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 64 ~s~~------~l------~~---------~~~--~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
+.=. ++ -| +.. .++|...+++|||||.|+.++=+
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 9611 11 01 111 56888999999999999988744
No 224
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=74.15 E-value=9.8 Score=36.35 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=32.9
Q ss_pred CCCCC-CCceeEEEeccccccCCh----HHHHHHHHHhccCCcEEEEEecCC
Q 023870 52 QLPVE-SFSIDTVLSISSSHELPG----DQLLEEISRVLKPGGTILIYKKLT 98 (276)
Q Consensus 52 ~lp~~-~~sfD~V~s~~~l~~~~~----~~~l~ei~rvLKPgG~l~i~~~~~ 98 (276)
-++++ ...|++|+...-+.+..+ ...+..+..++.|||.|+|.+.+.
T Consensus 177 Rl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 177 RLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred ccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 34444 346887776654433322 448899999999999999999773
No 225
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=73.38 E-value=12 Score=34.56 Aligned_cols=67 Identities=7% Similarity=-0.033 Sum_probs=46.7
Q ss_pred CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCC--CCeEEEeccCCCCCCCCCceeEEEecccc
Q 023870 4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSISSS 69 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~--~~v~~~~~d~~~lp~~~~sfD~V~s~~~l 69 (276)
+..|+.||.|+.|.+.-...+. +.|.+.++++....+ .+++++.+|+...+++ .||+|+++..+
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--~~d~VvaNlPY 111 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP--YFDVCVANVPY 111 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc--ccCEEEecCCc
Confidence 4678899999999864322222 567777777665433 4588999999877654 68999987765
Q ss_pred ccC
Q 023870 70 HEL 72 (276)
Q Consensus 70 ~~~ 72 (276)
+.-
T Consensus 112 ~Is 114 (294)
T PTZ00338 112 QIS 114 (294)
T ss_pred ccC
Confidence 543
No 226
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=72.13 E-value=7.7 Score=38.80 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=41.4
Q ss_pred CCCCeEEEeccCCCCCCCCCceeEEEecccccc-CC--hHHHHHHHHHhccCCcEEEEE
Q 023870 39 CDPQIITQASSLSQLPVESFSIDTVLSISSSHE-LP--GDQLLEEISRVLKPGGTILIY 94 (276)
Q Consensus 39 ~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~-~~--~~~~l~ei~rvLKPgG~l~i~ 94 (276)
.+.+|+.+..|+..++-|....|++++-..-.+ -. .++.|.-+.+.|||.|..+=+
T Consensus 419 W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 419 WDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred hcCeeEEEeccccccCCchhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 445688889999999855689999998432111 11 278999999999999887643
No 227
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=71.80 E-value=8.3 Score=32.97 Aligned_cols=92 Identities=17% Similarity=0.109 Sum_probs=52.2
Q ss_pred CCCcEEEEccCCC-CcHHHHH------------HHHHHHHHHhhhhCCC--CeEEEeccCC-CCC---CCCCceeEEEec
Q 023870 6 MQSAVLALSEDKI-LPVSAVL------------NAIRDLGDEAVEQCDP--QIITQASSLS-QLP---VESFSIDTVLSI 66 (276)
Q Consensus 6 ~g~~vL~v~~~~~-~~~~~v~------------~~m~~~A~~~~~~~~~--~v~~~~~d~~-~lp---~~~~sfD~V~s~ 66 (276)
.|.+||++-.|.+ ..++.+. ....+..+++++..+. .+..+..|.. .++ .....||+|+.-
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD 121 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD 121 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence 4778888876665 2344444 2333334444444332 3666666643 332 247899999986
Q ss_pred cccccCCh-HHHHHHHH--HhccCCcEEEEEecC
Q 023870 67 SSSHELPG-DQLLEEIS--RVLKPGGTILIYKKL 97 (276)
Q Consensus 67 ~~l~~~~~-~~~l~ei~--rvLKPgG~l~i~~~~ 97 (276)
-.+..-.. ..++..+. .+|+++|.+++....
T Consensus 122 PPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 122 PPYAKGLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp -STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred CCcccchHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 44443332 56777776 899999998877654
No 228
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=71.63 E-value=9.3 Score=35.31 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=41.1
Q ss_pred CCceeEEEecccc-ccCChHHHHHHHHHhccCCcEEEEEecCC--C-CchhHHHHHHHHHHHHHHCCCcchhh
Q 023870 57 SFSIDTVLSISSS-HELPGDQLLEEISRVLKPGGTILIYKKLT--S-DKGDVDKAISALEGKLLLAGFLDAQR 125 (276)
Q Consensus 57 ~~sfD~V~s~~~l-~~~~~~~~l~ei~rvLKPgG~l~i~~~~~--~-~~~~~~~~~~~l~~~l~laGF~~v~~ 125 (276)
.+.||+|+..+.. |.+.+ ++.++++|+|.|++-+..- . .........+.+...+..+||.....
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p-----~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p~~~ 287 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKP-----ELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKPVTN 287 (289)
T ss_pred cCCCCEEEEhhhhHhhcch-----HHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCccccc
Confidence 5579999865543 43332 3888999999998776321 0 11223333457778899999987543
No 229
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=71.48 E-value=1.6 Score=30.49 Aligned_cols=20 Identities=50% Similarity=1.326 Sum_probs=16.0
Q ss_pred CCCCCCC------CCCccccCCCCCC
Q 023870 235 SACGSCG------LGDAFRCGTCPYK 254 (276)
Q Consensus 235 ssCg~C~------lGDAFRC~~CPy~ 254 (276)
--||-|. -||+|||--|-|+
T Consensus 21 YiCgdC~~en~lk~~D~irCReCG~R 46 (62)
T KOG3507|consen 21 YICGDCGQENTLKRGDVIRCRECGYR 46 (62)
T ss_pred EEeccccccccccCCCcEehhhcchH
Confidence 4577775 4999999999886
No 230
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=71.31 E-value=24 Score=30.91 Aligned_cols=95 Identities=18% Similarity=0.120 Sum_probs=55.3
Q ss_pred CCCCCCCcEEEEccCCCCcHHHHHHHHHHHHHHhhh-------hCCCCeEEEeccCCCC--------CCCCCceeEEEec
Q 023870 2 DTGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVE-------QCDPQIITQASSLSQL--------PVESFSIDTVLSI 66 (276)
Q Consensus 2 ~~~~~g~~vL~v~~~~~~~~~~v~~~m~~~A~~~~~-------~~~~~v~~~~~d~~~l--------p~~~~sfD~V~s~ 66 (276)
.+++.|+.|++++...+.=+......+.. +.++- .....|.++++|+..- .+....+|+|+|=
T Consensus 41 ~i~~~~~~ViDLGAAPGgWsQva~~~~~~--~~~ivavDi~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD 118 (205)
T COG0293 41 KLFKPGMVVVDLGAAPGGWSQVAAKKLGA--GGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSD 118 (205)
T ss_pred CeecCCCEEEEcCCCCCcHHHHHHHHhCC--CCcEEEEECcccccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEec
Confidence 35788999999976664322111111111 00010 1113478888888653 2445568999973
Q ss_pred ccc--------ccCCh----HHHHHHHHHhccCCcEEEEEecCC
Q 023870 67 SSS--------HELPG----DQLLEEISRVLKPGGTILIYKKLT 98 (276)
Q Consensus 67 ~~l--------~~~~~----~~~l~ei~rvLKPgG~l~i~~~~~ 98 (276)
++. +|... ..++.-...+|+|||.|++..+..
T Consensus 119 ~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 119 MAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred CCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 321 22111 455666778999999999998764
No 231
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=71.25 E-value=11 Score=33.72 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=38.1
Q ss_pred CCeEEEeccCC-CC-----CCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEe
Q 023870 41 PQIITQASSLS-QL-----PVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYK 95 (276)
Q Consensus 41 ~~v~~~~~d~~-~l-----p~~~~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~ 95 (276)
.+|.++++.+. .| ..+.++||.++.= +|=.+ ...+.++.+.||+||.|++-+
T Consensus 125 ~KI~~i~g~a~esLd~l~~~~~~~tfDfaFvD---adK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 125 HKITFIEGPALESLDELLADGESGTFDFAFVD---ADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred ceeeeeecchhhhHHHHHhcCCCCceeEEEEc---cchHHHHHHHHHHHhhcccccEEEEec
Confidence 34888888764 33 2467899999874 22222 578899999999999999876
No 232
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=70.83 E-value=4.9 Score=35.64 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=32.1
Q ss_pred CCceeEEEeccccccCC-hHHHHHHHHHhccC-CcEEEEEec
Q 023870 57 SFSIDTVLSISSSHELP-GDQLLEEISRVLKP-GGTILIYKK 96 (276)
Q Consensus 57 ~~sfD~V~s~~~l~~~~-~~~~l~ei~rvLKP-gG~l~i~~~ 96 (276)
+-.||+|.+.+.+.-.. +-.+|..|+.+|.| +|++++.-.
T Consensus 167 ~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLV 208 (288)
T KOG3987|consen 167 DVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALV 208 (288)
T ss_pred CceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEE
Confidence 44799999988775444 47899999999999 999887643
No 233
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=70.67 E-value=42 Score=31.75 Aligned_cols=114 Identities=14% Similarity=0.165 Sum_probs=72.8
Q ss_pred CCCCCCcEEEEccCCC---CcHH----------HHHHHHHHHHHHhhhhCCC--CeEEEeccCCCCCCCCCceeEEEecc
Q 023870 3 TGKMQSAVLALSEDKI---LPVS----------AVLNAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSIS 67 (276)
Q Consensus 3 ~~~~g~~vL~v~~~~~---~~~~----------~v~~~m~~~A~~~~~~~~~--~v~~~~~d~~~lp~~~~sfD~V~s~~ 67 (276)
.++.|..|++.-.|.+ +|+. ++.+...+..++++...+. .+..+++|....+.....||.|+..+
T Consensus 185 ~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~ 264 (341)
T COG2520 185 LVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL 264 (341)
T ss_pred hhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC
Confidence 3566888888877764 1111 1114445555554443333 37789999988876668999999876
Q ss_pred ccccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCC
Q 023870 68 SSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGF 120 (276)
Q Consensus 68 ~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF 120 (276)
... ..+++....+.+|+||.+.+.+..+..... ......+.......|+
T Consensus 265 p~~---a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~-~~~~~~i~~~~~~~~~ 313 (341)
T COG2520 265 PKS---AHEFLPLALELLKDGGIIHYYEFVPEDDIE-ERPEKRIKSAARKGGY 313 (341)
T ss_pred CCc---chhhHHHHHHHhhcCcEEEEEeccchhhcc-cchHHHHHHHHhhccC
Confidence 421 156888899999999999999987643211 0122355555555665
No 234
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=69.17 E-value=15 Score=35.14 Aligned_cols=84 Identities=15% Similarity=0.048 Sum_probs=53.0
Q ss_pred CcEEEEccCCCCcHHH--------------HHHHHHHHHHHhhhhCCCC-eEEEeccCCCCCCCCCceeEEEeccccccC
Q 023870 8 SAVLALSEDKILPVSA--------------VLNAIRDLGDEAVEQCDPQ-IITQASSLSQLPVESFSIDTVLSISSSHEL 72 (276)
Q Consensus 8 ~~vL~v~~~~~~~~~~--------------v~~~m~~~A~~~~~~~~~~-v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~ 72 (276)
.+||++..|.+.-+-. +.+...+.+++++...+.. +.+..+|+..+-.....||+|+..- . ..
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-Gs 136 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-GS 136 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C-CC
Confidence 4677777666533111 1145556666665544443 5678888865422145799998842 1 11
Q ss_pred ChHHHHHHHHHhccCCcEEEEE
Q 023870 73 PGDQLLEEISRVLKPGGTILIY 94 (276)
Q Consensus 73 ~~~~~l~ei~rvLKPgG~l~i~ 94 (276)
...++....+.+++||.++++
T Consensus 137 -~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 137 -PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -cHHHHHHHHHHhcCCCEEEEE
Confidence 257888878889999999998
No 235
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=68.62 E-value=37 Score=29.33 Aligned_cols=92 Identities=16% Similarity=0.092 Sum_probs=54.3
Q ss_pred CCCcEEEEccCCC-CcHHHHH------------HHHHHHHHHhhhhCC--CCeEEEeccCCCC-C-CCC-CceeEEEecc
Q 023870 6 MQSAVLALSEDKI-LPVSAVL------------NAIRDLGDEAVEQCD--PQIITQASSLSQL-P-VES-FSIDTVLSIS 67 (276)
Q Consensus 6 ~g~~vL~v~~~~~-~~~~~v~------------~~m~~~A~~~~~~~~--~~v~~~~~d~~~l-p-~~~-~sfD~V~s~~ 67 (276)
.|.+||++-.|.+ +.++.+. .......+++++..+ ..+..+..|+... + ... +.||+|+.=-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 4788988865554 4455555 233344455555544 4566677776632 2 222 2599999855
Q ss_pred cccc--CChHHHHHH--HHHhccCCcEEEEEecC
Q 023870 68 SSHE--LPGDQLLEE--ISRVLKPGGTILIYKKL 97 (276)
Q Consensus 68 ~l~~--~~~~~~l~e--i~rvLKPgG~l~i~~~~ 97 (276)
.+++ +.....+.. -..+|+|+|.+++-...
T Consensus 123 Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 123 PYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred CCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 4442 211333333 46889999999987754
No 236
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=68.43 E-value=16 Score=34.06 Aligned_cols=58 Identities=12% Similarity=0.065 Sum_probs=40.8
Q ss_pred hCCCCeEEEeccCCCC--CCCCCceeEEEeccccccCC-----hHHHHHHHHHhccCCcEEEEEe
Q 023870 38 QCDPQIITQASSLSQL--PVESFSIDTVLSISSSHELP-----GDQLLEEISRVLKPGGTILIYK 95 (276)
Q Consensus 38 ~~~~~v~~~~~d~~~l--p~~~~sfD~V~s~~~l~~~~-----~~~~l~ei~rvLKPgG~l~i~~ 95 (276)
..+.+|..+.+|.-.+ .+..+.||+|+.-..-...+ .+..+.-+.+.||++|+++.+.
T Consensus 172 y~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 172 YEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred cCCCceEEEeccHHHHHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 3566788888876433 24578999998743322222 1567888999999999999875
No 237
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=68.29 E-value=2.5 Score=29.01 Aligned_cols=13 Identities=38% Similarity=0.943 Sum_probs=8.5
Q ss_pred CCCCCCeEEecCc
Q 023870 258 PFKLGEKVSLSSN 270 (276)
Q Consensus 258 aFkpGe~v~l~~~ 270 (276)
||++||+|+|.+.
T Consensus 5 pf~~GdrVQlTD~ 17 (54)
T PF14801_consen 5 PFRAGDRVQLTDP 17 (54)
T ss_dssp S--TT-EEEEEET
T ss_pred CCCCCCEEEEccC
Confidence 8999999999864
No 238
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=68.15 E-value=12 Score=34.90 Aligned_cols=70 Identities=14% Similarity=0.072 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhh-hCCCCeE--EEeccCCC----CCC--CCCceeEEEec-cccccCCh---HHHHHHHHH-hccCCcEE
Q 023870 26 NAIRDLGDEAVE-QCDPQII--TQASSLSQ----LPV--ESFSIDTVLSI-SSSHELPG---DQLLEEISR-VLKPGGTI 91 (276)
Q Consensus 26 ~~m~~~A~~~~~-~~~~~v~--~~~~d~~~----lp~--~~~sfD~V~s~-~~l~~~~~---~~~l~ei~r-vLKPgG~l 91 (276)
..+++.+.+++. ...+.+. -+.++..+ ++- ......+|+.. +++..++. ..+|+++++ .|+|||.|
T Consensus 114 ~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~l 193 (319)
T TIGR03439 114 RSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSF 193 (319)
T ss_pred HHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEE
Confidence 445555555555 3334344 36776644 221 22346666654 46666664 679999999 99999999
Q ss_pred EEEe
Q 023870 92 LIYK 95 (276)
Q Consensus 92 ~i~~ 95 (276)
++..
T Consensus 194 LiG~ 197 (319)
T TIGR03439 194 LIGL 197 (319)
T ss_pred EEec
Confidence 8864
No 239
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=67.90 E-value=15 Score=28.37 Aligned_cols=77 Identities=16% Similarity=0.087 Sum_probs=52.7
Q ss_pred cEEEEccCCCCcHHHHHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCC
Q 023870 9 AVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPG 88 (276)
Q Consensus 9 ~vL~v~~~~~~~~~~v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPg 88 (276)
++|++-.+. -.+.-+.+.|.+.++++ +..+.+.+....+++-.-+.||+|+..--. .-.+.++...+.+-
T Consensus 2 ~Ill~C~~G-aSSs~la~km~~~a~~~----gi~~~i~a~~~~e~~~~~~~~Dvill~PQv-----~~~~~~i~~~~~~~ 71 (99)
T cd05565 2 NVLVLCAGG-GTSGLLANALNKGAKER----GVPLEAAAGAYGSHYDMIPDYDLVILAPQM-----ASYYDELKKDTDRL 71 (99)
T ss_pred EEEEECCCC-CCHHHHHHHHHHHHHHC----CCcEEEEEeeHHHHHHhccCCCEEEEcChH-----HHHHHHHHHHhhhc
Confidence 467776444 45677889999888764 566777777777776556679988875322 33577788888887
Q ss_pred cEEEEEe
Q 023870 89 GTILIYK 95 (276)
Q Consensus 89 G~l~i~~ 95 (276)
|.-+...
T Consensus 72 ~ipv~~I 78 (99)
T cd05565 72 GIKLVTT 78 (99)
T ss_pred CCCEEEe
Confidence 7755443
No 240
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=67.44 E-value=12 Score=31.58 Aligned_cols=70 Identities=26% Similarity=0.292 Sum_probs=35.7
Q ss_pred HHHHHHHHHhccCCcEEEEEecCCC-CchhH----HHHHHHHHHHHHHCCCcchhhhhcccccCCce--eEEEEeeccCC
Q 023870 75 DQLLEEISRVLKPGGTILIYKKLTS-DKGDV----DKAISALEGKLLLAGFLDAQRIQLKSVVPAEV--VSFGVKGKKPT 147 (276)
Q Consensus 75 ~~~l~ei~rvLKPgG~l~i~~~~~~-~~~~~----~~~~~~l~~~l~laGF~~v~~~~~~~~~~~~~--~~~~i~akKP~ 147 (276)
..++.-+++.|.|||+|++.-.... +...+ .-....|-..|..+||+-...|.. |.+. ....++|.||-
T Consensus 66 ~~l~~~~~~~l~pg~~lfVeY~~D~eT~~~L~~G~pp~~TrLG~~Ll~~GFtwfKdWYf----PEG~~EGg~KlQa~Kpl 141 (170)
T PF06557_consen 66 DELYKLFSRYLEPGGRLFVEYVEDRETRRQLQRGVPPAETRLGFSLLKAGFTWFKDWYF----PEGGMEGGPKLQAEKPL 141 (170)
T ss_dssp HHHHHHHHTT----SEEEEE-TT-HHHHHHHHTT--GGGSHHHHHHHTTT--EEEEEE------TTTSTT-EEEEEE--S
T ss_pred HHHHHHHHHHhhhcCeEEEEEecCHHHHHHHHcCCCcccchhHHHHHhCCcEEEeeeec----cCccccCCceeeeecCC
Confidence 6789999999999999998754321 11111 001124567899999998777753 2222 44567888885
Q ss_pred C
Q 023870 148 W 148 (276)
Q Consensus 148 ~ 148 (276)
-
T Consensus 142 ~ 142 (170)
T PF06557_consen 142 N 142 (170)
T ss_dssp S
T ss_pred C
Confidence 3
No 241
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=64.06 E-value=18 Score=30.46 Aligned_cols=75 Identities=16% Similarity=0.217 Sum_probs=48.7
Q ss_pred ccCCCCC----CCCCceeEEEecccccc---------C--C-h--HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHH
Q 023870 48 SSLSQLP----VESFSIDTVLSISSSHE---------L--P-G--DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAIS 109 (276)
Q Consensus 48 ~d~~~lp----~~~~sfD~V~s~~~l~~---------~--~-~--~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~ 109 (276)
.|+..+. +....||.|+-++.... + + . ..++....++|+++|.+.++-..... . ..|
T Consensus 60 VDat~l~~~~~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p---y-~~W- 134 (166)
T PF10354_consen 60 VDATKLHKHFRLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP---Y-DSW- 134 (166)
T ss_pred CCCCcccccccccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC---C-ccc-
Confidence 4555553 35689999999876433 1 0 1 56788889999999999988654211 1 123
Q ss_pred HHHHHHHHCCCcchhhhh
Q 023870 110 ALEGKLLLAGFLDAQRIQ 127 (276)
Q Consensus 110 ~l~~~l~laGF~~v~~~~ 127 (276)
++......+||+-.....
T Consensus 135 ~i~~lA~~~gl~l~~~~~ 152 (166)
T PF10354_consen 135 NIEELAAEAGLVLVRKVP 152 (166)
T ss_pred cHHHHHHhcCCEEEEEec
Confidence 344567778998665543
No 242
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=63.73 E-value=62 Score=27.57 Aligned_cols=91 Identities=13% Similarity=0.008 Sum_probs=50.6
Q ss_pred CCCcEEEEccCCCCc-HHHHH------------HHHHHHHHHhhhhCCC--CeEEEeccCCC-CC-C-CCC-ceeEEEec
Q 023870 6 MQSAVLALSEDKILP-VSAVL------------NAIRDLGDEAVEQCDP--QIITQASSLSQ-LP-V-ESF-SIDTVLSI 66 (276)
Q Consensus 6 ~g~~vL~v~~~~~~~-~~~v~------------~~m~~~A~~~~~~~~~--~v~~~~~d~~~-lp-~-~~~-sfD~V~s~ 66 (276)
.|.+||++..|.+.- ++... ..+.+.+++.+...+. ++.++.+|+.. +. + ... .||+|+.-
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 478899998887632 22121 4555556555544433 47788888843 22 2 122 47887774
Q ss_pred cccccCChHHHHHHHHH--hccCCcEEEEEec
Q 023870 67 SSSHELPGDQLLEEISR--VLKPGGTILIYKK 96 (276)
Q Consensus 67 ~~l~~~~~~~~l~ei~r--vLKPgG~l~i~~~ 96 (276)
-.+..-....++..+.+ +|+++|.+++...
T Consensus 129 PPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 129 PPFFNGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred cCCCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 33322112455555543 6888887776543
No 243
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=62.85 E-value=46 Score=32.57 Aligned_cols=107 Identities=20% Similarity=0.305 Sum_probs=64.9
Q ss_pred CCCCcEEEEccCCCCcHHHHHHHHHHHHHHhhhhCCCCeEEEeccCCCCC----------CCCCceeEEEecc-ccccCC
Q 023870 5 KMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP----------VESFSIDTVLSIS-SSHELP 73 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~~v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp----------~~~~sfD~V~s~~-~l~~~~ 73 (276)
+.|-+||+|..+.-.|+ .++....++++ ..+.|....-+.-| +..+.||+|+.=. .-|++.
T Consensus 126 k~~~kvllVaaD~~RpA--A~eQL~~La~q------~~v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~id 197 (451)
T COG0541 126 KKGKKVLLVAADTYRPA--AIEQLKQLAEQ------VGVPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHID 197 (451)
T ss_pred HcCCceEEEecccCChH--HHHHHHHHHHH------cCCceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccccc
Confidence 46889999988887775 34555555543 22333222222222 3466799998744 445554
Q ss_pred h--HHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCc
Q 023870 74 G--DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL 121 (276)
Q Consensus 74 ~--~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~ 121 (276)
. -.=+.+|+++++|.=.|++.+..-+ ++......++...+-+.|.+
T Consensus 198 e~Lm~El~~Ik~~~~P~E~llVvDam~G--QdA~~~A~aF~e~l~itGvI 245 (451)
T COG0541 198 EELMDELKEIKEVINPDETLLVVDAMIG--QDAVNTAKAFNEALGITGVI 245 (451)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEecccc--hHHHHHHHHHhhhcCCceEE
Confidence 3 3345678999999999999997643 22222233555666667766
No 244
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=61.87 E-value=57 Score=28.12 Aligned_cols=82 Identities=18% Similarity=0.181 Sum_probs=42.6
Q ss_pred cEEEEccCC-C-Cc--HHHHHHHHHHHHHHhhhhCCCCeEEEeccCCCCCC-CCCceeEEEeccccc-cCChHHHHHHHH
Q 023870 9 AVLALSEDK-I-LP--VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPV-ESFSIDTVLSISSSH-ELPGDQLLEEIS 82 (276)
Q Consensus 9 ~vL~v~~~~-~-~~--~~~v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~-~~~sfD~V~s~~~l~-~~~~~~~l~ei~ 82 (276)
+||+++.+. . .+ .....+.|.++.++. .+..+.+ ..+...+.- .-..||+|+...... .+ +.+..+.+.
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~---~~~~v~~-~~~~~~~~~~~L~~~Dvvv~~~~~~~~l-~~~~~~al~ 75 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEES---EGFEVTV-TEDPDDLTPENLKGYDVVVFYNTGGDEL-TDEQRAALR 75 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHT---TCEEEEE-CCSGGCTSHHCHCT-SEEEEE-SSCCGS--HHHHHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccC---CCEEEEE-EeCcccCChhHhcCCCEEEEECCCCCcC-CHHHHHHHH
Confidence 688888773 2 22 234445555555432 2222332 222222211 125899999876653 23 356677788
Q ss_pred HhccCCcEEEEEe
Q 023870 83 RVLKPGGTILIYK 95 (276)
Q Consensus 83 rvLKPgG~l~i~~ 95 (276)
+.++.||-|+..-
T Consensus 76 ~~v~~Ggglv~lH 88 (217)
T PF06283_consen 76 DYVENGGGLVGLH 88 (217)
T ss_dssp HHHHTT-EEEEEG
T ss_pred HHHHcCCCEEEEc
Confidence 8888888888766
No 245
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=61.72 E-value=3.4 Score=22.87 Aligned_cols=11 Identities=27% Similarity=1.029 Sum_probs=7.4
Q ss_pred cccCCCCCCCC
Q 023870 246 FRCGTCPYKGL 256 (276)
Q Consensus 246 FRC~~CPy~G~ 256 (276)
|||.-|||...
T Consensus 1 y~C~~C~y~t~ 11 (24)
T PF13909_consen 1 YKCPHCSYSTS 11 (24)
T ss_dssp EE-SSSS-EES
T ss_pred CCCCCCCCcCC
Confidence 79999999753
No 246
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=61.36 E-value=76 Score=24.72 Aligned_cols=108 Identities=18% Similarity=0.140 Sum_probs=52.4
Q ss_pred EEEEccCCCCcHHHHHHHHHHHHHHhhhhCCCCeEEEeccCCCCCC-CCCceeEEEecccccc---CC-h--HHHHHHHH
Q 023870 10 VLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPV-ESFSIDTVLSISSSHE---LP-G--DQLLEEIS 82 (276)
Q Consensus 10 vL~v~~~~~~~~~~v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~-~~~sfD~V~s~~~l~~---~~-~--~~~l~ei~ 82 (276)
|++++.....+.+.|.+.+.+.++. .+..+.. .++.+.+. .-..+|.|+.....++ .+ . ..++..+.
T Consensus 1 v~Iiy~S~tGnT~~~A~~i~~~~~~----~g~~v~~--~~~~~~~~~~l~~~d~iilgspty~~g~~p~~~~~~f~~~l~ 74 (140)
T TIGR01753 1 ILIVYASMTGNTEEMANIIAEGLKE----AGAEVDL--LEVADADAEDLLSYDAVLLGCSTWGDEDLEQDDFEPFFEELE 74 (140)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHh----cCCeEEE--EEcccCCHHHHhcCCEEEEEcCCCCCCCCCcchHHHHHHHhh
Confidence 3555555556677777777765543 2333332 23333321 2235898887665543 22 1 34555444
Q ss_pred HhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchh
Q 023870 83 RVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ 124 (276)
Q Consensus 83 rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~ 124 (276)
+. ...|+-+..-...++..+...+...+...|...|+..+.
T Consensus 75 ~~-~~~gk~~~vfgt~g~~~~f~~~~~~~~~~l~~~g~~~v~ 115 (140)
T TIGR01753 75 DI-DLGGKKVALFGSGDWGYEFCEAVDDWEERLKEAGATIIA 115 (140)
T ss_pred hC-CCCCCEEEEEecCCCCchhhHHHHHHHHHHHHCCCEEec
Confidence 32 123432222111111111334455677777778887643
No 247
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=60.88 E-value=5.9 Score=33.67 Aligned_cols=23 Identities=48% Similarity=0.820 Sum_probs=19.6
Q ss_pred HHHHHHHHHhccCCcEEEEEecC
Q 023870 75 DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 75 ~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
..++.+++|+|||||.+++....
T Consensus 36 ~~~~~~~~rvLk~~g~~~i~~~~ 58 (231)
T PF01555_consen 36 EEWLKECYRVLKPGGSIFIFIDD 58 (231)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE-C
T ss_pred HHHHHHHHhhcCCCeeEEEEecc
Confidence 67899999999999999887644
No 248
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=59.72 E-value=19 Score=31.47 Aligned_cols=88 Identities=13% Similarity=0.072 Sum_probs=42.9
Q ss_pred CCCCCcEEEEccCCCCcHHHHH---------------------HHHHHHHHHhhhhCC---CCeEEEeccCCCCCCCC--
Q 023870 4 GKMQSAVLALSEDKILPVSAVL---------------------NAIRDLGDEAVEQCD---PQIITQASSLSQLPVES-- 57 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~v~---------------------~~m~~~A~~~~~~~~---~~v~~~~~d~~~lp~~~-- 57 (276)
++.++-.++++.|.+..+-.+. ..+.+..+++....+ .++.+..+|+.+.++..
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~ 119 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI 119 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh
Confidence 4567778899888874421111 112222222222222 34677788876654321
Q ss_pred -CceeEEEeccccccCCh--HHHHHHHHHhccCCcEEEE
Q 023870 58 -FSIDTVLSISSSHELPG--DQLLEEISRVLKPGGTILI 93 (276)
Q Consensus 58 -~sfD~V~s~~~l~~~~~--~~~l~ei~rvLKPgG~l~i 93 (276)
..-|+|++++.. +.+ ...|.++..-||+|-+++.
T Consensus 120 ~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 120 WSDADVVFVNNTC--FDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp GHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred hcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEEE
Confidence 356899988753 232 5566888889999888763
No 249
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=59.40 E-value=1e+02 Score=28.51 Aligned_cols=115 Identities=13% Similarity=0.157 Sum_probs=68.3
Q ss_pred CCCCCCcEEEEccCCCCcHHHHHHHH---------------HHHHHHhhhh--CCCCeEEEeccCCCCCCC--CCceeEE
Q 023870 3 TGKMQSAVLALSEDKILPVSAVLNAI---------------RDLGDEAVEQ--CDPQIITQASSLSQLPVE--SFSIDTV 63 (276)
Q Consensus 3 ~~~~g~~vL~v~~~~~~~~~~v~~~m---------------~~~A~~~~~~--~~~~v~~~~~d~~~lp~~--~~sfD~V 63 (276)
.+.+|+.|+=.+.|.+.-+-.+...+ .+.|.+--.. .+.++.+..-|+...-|. +..+|.|
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaV 181 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAV 181 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceE
Confidence 46789999988888875433333222 1222222222 344577777888776654 5679999
Q ss_pred EeccccccCChHHHHHHHHHhccCCc-EEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhhhc
Q 023870 64 LSISSSHELPGDQLLEEISRVLKPGG-TILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQL 128 (276)
Q Consensus 64 ~s~~~l~~~~~~~~l~ei~rvLKPgG-~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~~~ 128 (276)
+.-...-| .++..++.+||-+| +|.-..+. +.+. +.-...|...||+++.....
T Consensus 182 FLDlPaPw----~AiPha~~~lk~~g~r~csFSPC------IEQv-qrtce~l~~~gf~~i~~vEv 236 (314)
T KOG2915|consen 182 FLDLPAPW----EAIPHAAKILKDEGGRLCSFSPC------IEQV-QRTCEALRSLGFIEIETVEV 236 (314)
T ss_pred EEcCCChh----hhhhhhHHHhhhcCceEEeccHH------HHHH-HHHHHHHHhCCCceEEEEEe
Confidence 87554333 46777888999877 44433222 2111 12334577889999876653
No 250
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=58.81 E-value=35 Score=32.27 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=26.3
Q ss_pred ceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecC
Q 023870 59 SIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 59 sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
.||+|+.... ...+....+.||+||++++.-..
T Consensus 229 ~~d~ii~tv~------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 229 IADAIIDTVG------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred hCcEEEECCC------hhhHHHHHHHHhcCCEEEEECCC
Confidence 3999988654 35688899999999999887544
No 251
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=58.62 E-value=3.9 Score=30.99 Aligned_cols=54 Identities=19% Similarity=0.221 Sum_probs=34.8
Q ss_pred CCeEEEeccCCCC--CCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEe
Q 023870 41 PQIITQASSLSQL--PVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYK 95 (276)
Q Consensus 41 ~~v~~~~~d~~~l--p~~~~sfD~V~s~~~l~~~~~-~~~l~ei~rvLKPgG~l~i~~ 95 (276)
.+++++.++.... .++...||+|+.=.. |..+. ...+..+.+.|+|||.+++-+
T Consensus 49 ~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 49 DRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp BTEEEEES-THHHHHHHHH--EEEEEEES----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CeEEEEEcCcHHHHHHcCCCCEEEEEECCC-CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 3488888887533 244679999987442 33333 667888999999999998764
No 252
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=57.20 E-value=15 Score=33.15 Aligned_cols=55 Identities=22% Similarity=0.244 Sum_probs=39.0
Q ss_pred eEEEeccCCCC--------CCCCCceeEEEec-----cccccCCh-------HHHHHHHHHhccCCcEEEEEecC
Q 023870 43 IITQASSLSQL--------PVESFSIDTVLSI-----SSSHELPG-------DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 43 v~~~~~d~~~l--------p~~~~sfD~V~s~-----~~l~~~~~-------~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
|..+++|+.+. -|..+.-|+|+|- ..+|.+.. -.+|+-..++|||||.|+-..+.
T Consensus 91 V~qlq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifR 165 (294)
T KOG1099|consen 91 VIQLQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFR 165 (294)
T ss_pred eEEeecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhc
Confidence 56677887764 3667789999983 45666553 24556678999999999866654
No 253
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=55.87 E-value=1.4e+02 Score=26.05 Aligned_cols=106 Identities=10% Similarity=-0.010 Sum_probs=67.0
Q ss_pred CCcEEEEccCCCCcHH-------------HHHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccC-
Q 023870 7 QSAVLALSEDKILPVS-------------AVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL- 72 (276)
Q Consensus 7 g~~vL~v~~~~~~~~~-------------~v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~- 72 (276)
|..|++++.|.+.-+- ++-..+++.+++++......+.|+.+|+.... ..||.|+.+-.+-.+
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~~~ 122 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFGSQR 122 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCcccc
Confidence 3457777777653211 11277888888887776677999999998874 468888876543211
Q ss_pred --ChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhh
Q 023870 73 --PGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI 126 (276)
Q Consensus 73 --~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~ 126 (276)
.|..++....++- .++.+-+..++ .+.+++....+||+..+.+
T Consensus 123 rhaDr~Fl~~Ale~s----~vVYsiH~a~~-------~~f~~~~~~~~G~~v~~~~ 167 (198)
T COG2263 123 RHADRPFLLKALEIS----DVVYSIHKAGS-------RDFVEKFAADLGGTVTHIE 167 (198)
T ss_pred ccCCHHHHHHHHHhh----heEEEeecccc-------HHHHHHHHHhcCCeEEEEE
Confidence 3478888877774 33333333221 2256677888898766544
No 254
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=54.71 E-value=22 Score=26.98 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=44.4
Q ss_pred cEEEEccCCCCcHHHHHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccC-
Q 023870 9 AVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKP- 87 (276)
Q Consensus 9 ~vL~v~~~~~~~~~~v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~~~~l~ei~rvLKP- 87 (276)
++|++..+.... .-|...|.+.+++ .+..+.+...++.++.-....||+|+..--+ ...+.++.+...+
T Consensus 1 kIl~~Cg~G~sT-S~~~~ki~~~~~~----~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv-----~~~~~~i~~~~~~~ 70 (96)
T cd05564 1 KILLVCSAGMST-SILVKKMKKAAEK----RGIDAEIEAVPESELEEYIDDADVVLLGPQV-----RYMLDEVKKKAAEY 70 (96)
T ss_pred CEEEEcCCCchH-HHHHHHHHHHHHH----CCCceEEEEecHHHHHHhcCCCCEEEEChhH-----HHHHHHHHHHhccC
Confidence 466775555443 4566666666554 3566777777776654334579999876311 2345666654443
Q ss_pred CcEEEEEec
Q 023870 88 GGTILIYKK 96 (276)
Q Consensus 88 gG~l~i~~~ 96 (276)
+-.+.+.++
T Consensus 71 ~~pv~~I~~ 79 (96)
T cd05564 71 GIPVAVIDM 79 (96)
T ss_pred CCcEEEcCh
Confidence 444554443
No 255
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=54.71 E-value=1.1e+02 Score=27.09 Aligned_cols=88 Identities=15% Similarity=0.050 Sum_probs=49.4
Q ss_pred CCCcEEEEccCCCCcH-HHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccC
Q 023870 6 MQSAVLALSEDKILPV-SAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL 72 (276)
Q Consensus 6 ~g~~vL~v~~~~~~~~-~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~ 72 (276)
.|-+||.++.+.++++ ..+. +......+-++...+..+.+...++-- ++..||+|+..-.+..-
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~~ 155 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYNH 155 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecCc
Confidence 5788999999988762 1111 111111222333344556665554433 67799999986554333
Q ss_pred Ch-HHHHHHHHHhccCCcEEE-EEecC
Q 023870 73 PG-DQLLEEISRVLKPGGTIL-IYKKL 97 (276)
Q Consensus 73 ~~-~~~l~ei~rvLKPgG~l~-i~~~~ 97 (276)
+- ..++. +.+.|+..|.-+ +-++.
T Consensus 156 ~~a~~l~~-~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 156 TEADRLIP-WKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred hHHHHHHH-HHHHHHhCCCEEEEeCCC
Confidence 32 55666 666666656554 44443
No 256
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=53.86 E-value=70 Score=25.54 Aligned_cols=58 Identities=14% Similarity=0.079 Sum_probs=31.9
Q ss_pred CcEEEEccCCCCcHHHHHHHHHHHHHHhhhhCCCCeE--EEeccCCCCCCCCCceeEEEecccc
Q 023870 8 SAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQII--TQASSLSQLPVESFSIDTVLSISSS 69 (276)
Q Consensus 8 ~~vL~v~~~~~~~~~~v~~~m~~~A~~~~~~~~~~v~--~~~~d~~~lp~~~~sfD~V~s~~~l 69 (276)
++++++......+.+.|.+.|.+..+.. +..+. +...++...+.....||.|+.....
T Consensus 1 M~i~IiY~S~tGnTe~iA~~ia~~l~~~----g~~v~~~~~~~~~~~~~~~~~~~d~iilgs~t 60 (140)
T TIGR01754 1 MRILLAYLSLSGNTEEVAFMIQDYLQKD----GHEVDILHRIGTLADAPLDPENYDLVFLGTWT 60 (140)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhhC----CeeEEecccccccccCcCChhhCCEEEEEcCe
Confidence 3677777766667777777777665432 22232 1112222233334468888876543
No 257
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=51.08 E-value=28 Score=26.41 Aligned_cols=71 Identities=17% Similarity=0.198 Sum_probs=42.8
Q ss_pred cEEEEccCCCCcHHHHHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCC
Q 023870 9 AVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPG 88 (276)
Q Consensus 9 ~vL~v~~~~~~~~~~v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPg 88 (276)
++|++..+... ..-+...|.+.+++ .+..+.+.+.++.+++-....||+|+..--+ ...+.++.+.+.+-
T Consensus 5 ~ILl~C~~G~s-SS~l~~k~~~~~~~----~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi-----~~~~~~i~~~~~~~ 74 (95)
T TIGR00853 5 NILLLCAAGMS-TSLLVNKMNKAAEE----YGVPVKIAAGSYGAAGEKLDDADVVLLAPQV-----AYMLPDLKKETDKK 74 (95)
T ss_pred EEEEECCCchh-HHHHHHHHHHHHHH----CCCcEEEEEecHHHHHhhcCCCCEEEECchH-----HHHHHHHHHHhhhc
Confidence 57777655543 44566777776655 3566777777766654334578999876322 22355666665543
Q ss_pred c
Q 023870 89 G 89 (276)
Q Consensus 89 G 89 (276)
|
T Consensus 75 ~ 75 (95)
T TIGR00853 75 G 75 (95)
T ss_pred C
Confidence 3
No 258
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=50.29 E-value=48 Score=30.27 Aligned_cols=57 Identities=18% Similarity=0.250 Sum_probs=34.8
Q ss_pred eEEEeccCCCCC--C----CCCcee-----EEEeccccccCCh----HHHHHHHHHhccCCcEEEEEecCCC
Q 023870 43 IITQASSLSQLP--V----ESFSID-----TVLSISSSHELPG----DQLLEEISRVLKPGGTILIYKKLTS 99 (276)
Q Consensus 43 v~~~~~d~~~lp--~----~~~sfD-----~V~s~~~l~~~~~----~~~l~ei~rvLKPgG~l~i~~~~~~ 99 (276)
..++++|+.+.. + -.+-+| .|+.+..+||+++ ..+++.++..|-||.+|+++.....
T Consensus 123 t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 123 TAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp EEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred EEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 678899886531 1 123344 3556777899875 7899999999999999999987653
No 259
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=49.43 E-value=33 Score=28.56 Aligned_cols=41 Identities=32% Similarity=0.242 Sum_probs=25.4
Q ss_pred CceeEEEecccc----c----cCCh----HHHHHHHHHhccCCcEEEEEecCC
Q 023870 58 FSIDTVLSISSS----H----ELPG----DQLLEEISRVLKPGGTILIYKKLT 98 (276)
Q Consensus 58 ~sfD~V~s~~~l----~----~~~~----~~~l~ei~rvLKPgG~l~i~~~~~ 98 (276)
..||+|++=.+. + +... ...+.-+.+.|||||.|++..+..
T Consensus 90 ~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~ 142 (181)
T PF01728_consen 90 EKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG 142 (181)
T ss_dssp CSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred cCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence 689999984421 1 1111 334445567899999999988763
No 260
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=47.70 E-value=95 Score=28.91 Aligned_cols=111 Identities=12% Similarity=0.159 Sum_probs=68.8
Q ss_pred CCcEEEEccCCCCcHHHHH-------------HHHHHHHHHhhhhCCCC-eEEEeccCCCCCCC---CCceeEEEecccc
Q 023870 7 QSAVLALSEDKILPVSAVL-------------NAIRDLGDEAVEQCDPQ-IITQASSLSQLPVE---SFSIDTVLSISSS 69 (276)
Q Consensus 7 g~~vL~v~~~~~~~~~~v~-------------~~m~~~A~~~~~~~~~~-v~~~~~d~~~lp~~---~~sfD~V~s~~~l 69 (276)
|-.+++++|+--..+..+. +.+++.-++-+++.+.+ +....-|+.+ ||| ...||+.+.--.
T Consensus 153 gK~I~vvGDDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~-plpe~~~~kFDvfiTDPp- 230 (354)
T COG1568 153 GKEIFVVGDDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRN-PLPEDLKRKFDVFITDPP- 230 (354)
T ss_pred CCeEEEEcCchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcc-cChHHHHhhCCeeecCch-
Confidence 4458888877655544443 55666666655666665 6666667754 555 457998876321
Q ss_pred ccCCh-HHHHHHHHHhccCC---cEEEEEecCCCCchhHHHHHHHHHH-HHHHCCCcchh
Q 023870 70 HELPG-DQLLEEISRVLKPG---GTILIYKKLTSDKGDVDKAISALEG-KLLLAGFLDAQ 124 (276)
Q Consensus 70 ~~~~~-~~~l~ei~rvLKPg---G~l~i~~~~~~~~~~~~~~~~~l~~-~l~laGF~~v~ 124 (276)
..+.. ..++..=...||-- |+|.++.... ...-|..+++ ...--||+-..
T Consensus 231 eTi~alk~FlgRGI~tLkg~~~aGyfgiT~res-----sidkW~eiQr~lIn~~gvVITd 285 (354)
T COG1568 231 ETIKALKLFLGRGIATLKGEGCAGYFGITRRES-----SIDKWREIQRILINEMGVVITD 285 (354)
T ss_pred hhHHHHHHHHhccHHHhcCCCccceEeeeeccc-----cHHHHHHHHHHHHHhcCeeeHh
Confidence 22223 55666667778766 8888776432 2334777777 56778888543
No 261
>PF05566 Pox_vIL-18BP: Orthopoxvirus interleukin 18 binding protein; InterPro: IPR008791 Interleukin-18 (IL-18) is a proinflammatory cytokine that plays a key role in the activation of natural killer and T helper 1 cell responses principally by inducing interferon-gamma (IFN-gamma). Several poxvirus genes encode proteins with sequence similarity to IL-18BPs. It has been shown that vaccinia, ectromelia and cowpox viruses secrete from infected cells a soluble IL-18BP (vIL-18BP) that may modulate the host antiviral response. The expression of vIL-18BPs by distinct poxvirus genera that cause local or general viral dissemination, or persistent or acute infections in the host, emphasises the importance of IL-18 in response to viral infections [].; PDB: 3F62_A.
Probab=47.40 E-value=5.3 Score=31.49 Aligned_cols=13 Identities=46% Similarity=1.382 Sum_probs=9.9
Q ss_pred ccccCCC-CCCCCCCC
Q 023870 245 AFRCGTC-PYKGLPPF 259 (276)
Q Consensus 245 AFRC~~C-Py~G~PaF 259 (276)
-|||+|| -| ||-|
T Consensus 36 ~fhCsGcv~~--~peF 49 (126)
T PF05566_consen 36 EFHCSGCVKY--MPEF 49 (126)
T ss_dssp EEEEEEEE-S--STTS
T ss_pred eEEEechhhh--Cccc
Confidence 5999999 66 6777
No 262
>PF11604 CusF_Ec: Copper binding periplasmic protein CusF; InterPro: IPR021647 CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein []. ; PDB: 2L55_A 2VB3_X 1ZEQ_X 2QCP_X 3E6Z_X 2VB2_X.
Probab=45.63 E-value=14 Score=26.46 Aligned_cols=11 Identities=36% Similarity=0.622 Sum_probs=7.1
Q ss_pred CCCCCCeEEec
Q 023870 258 PFKLGEKVSLS 268 (276)
Q Consensus 258 aFkpGe~v~l~ 268 (276)
.||||++|.+.
T Consensus 42 ~l~~Gd~V~F~ 52 (70)
T PF11604_consen 42 GLKPGDKVRFT 52 (70)
T ss_dssp S-STT-EEEEE
T ss_pred cCCCCCEEEEE
Confidence 48899999875
No 263
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=45.12 E-value=24 Score=32.24 Aligned_cols=92 Identities=18% Similarity=0.244 Sum_probs=51.4
Q ss_pred CCCCcEEEEccCCCCcHHHHHHHHH---------------HHHHHhhhhCCCC-eEEEeccCCCC-C-CCCCceeEEEec
Q 023870 5 KMQSAVLALSEDKILPVSAVLNAIR---------------DLGDEAVEQCDPQ-IITQASSLSQL-P-VESFSIDTVLSI 66 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~~v~~~m~---------------~~A~~~~~~~~~~-v~~~~~d~~~l-p-~~~~sfD~V~s~ 66 (276)
..|..||++-...+.=...+.+.|. ...+++....+.. +.....|.... + .....||.|+.=
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcC
Confidence 4667777765544322223333331 2223334444544 56665676655 2 334469999971
Q ss_pred ---cc---ccc---------------CCh--HHHHHHHHHhc----cCCcEEEEEec
Q 023870 67 ---SS---SHE---------------LPG--DQLLEEISRVL----KPGGTILIYKK 96 (276)
Q Consensus 67 ---~~---l~~---------------~~~--~~~l~ei~rvL----KPgG~l~i~~~ 96 (276)
+. +.. +.. .++|...++.+ ||||+++.++=
T Consensus 164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 11 110 111 56888999999 99999998873
No 264
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=43.85 E-value=1.1e+02 Score=28.44 Aligned_cols=75 Identities=20% Similarity=0.146 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhhhhCCCC--eEEE----eccC-CCCCCCCCceeEEEecccccc------------------------
Q 023870 23 AVLNAIRDLGDEAVEQCDPQ--IITQ----ASSL-SQLPVESFSIDTVLSISSSHE------------------------ 71 (276)
Q Consensus 23 ~v~~~m~~~A~~~~~~~~~~--v~~~----~~d~-~~lp~~~~sfD~V~s~~~l~~------------------------ 71 (276)
++..+.+..|.++++...+. +..+ ..+. ...++..+.+|+++++-.+-.
T Consensus 179 D~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~ 258 (328)
T KOG2904|consen 179 DVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGL 258 (328)
T ss_pred eccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhcccc
Confidence 34467777777766654332 3333 2332 234567889999999742100
Q ss_pred --CCh-HHHHHHHHHhccCCcEEEEEecC
Q 023870 72 --LPG-DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 72 --~~~-~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
... ..++.-+.|.|+|||.+.+....
T Consensus 259 eG~~~~~~~~~~a~R~Lq~gg~~~le~~~ 287 (328)
T KOG2904|consen 259 EGYDNLVHYWLLATRMLQPGGFEQLELVE 287 (328)
T ss_pred chhHHHHHHHHhhHhhcccCCeEEEEecc
Confidence 001 23455678999999999887653
No 265
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=43.08 E-value=48 Score=27.50 Aligned_cols=38 Identities=29% Similarity=0.520 Sum_probs=28.2
Q ss_pred CCCCC-CceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecC
Q 023870 53 LPVES-FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 53 lp~~~-~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
.+.+. ..+|++++.. +..+......|||||.+++-...
T Consensus 50 ~~~~~~~~~Dilv~l~-------~~~~~~~~~~l~~~g~vi~ns~~ 88 (173)
T PF01558_consen 50 IPSPPVGEADILVALD-------PEALERHLKGLKPGGVVIINSSL 88 (173)
T ss_dssp SSSS-TSSESEEEESS-------HHHHHHCGTTCETTEEEEEETTT
T ss_pred ccCcccCCCCEEEEcC-------HHHHHHHhcCcCcCeEEEEECCC
Confidence 34444 7999999873 35566888999999999987743
No 266
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=43.00 E-value=25 Score=29.23 Aligned_cols=11 Identities=45% Similarity=0.761 Sum_probs=9.2
Q ss_pred CCCCCCeEEec
Q 023870 258 PFKLGEKVSLS 268 (276)
Q Consensus 258 aFkpGe~v~l~ 268 (276)
.+++|++|.|.
T Consensus 58 ~~~vGD~V~v~ 68 (154)
T PRK10862 58 PLVPGQKVELG 68 (154)
T ss_pred CCCCCCEEEEe
Confidence 36999999886
No 267
>PF05484 LRV_FeS: LRV protein FeS4 cluster; InterPro: IPR008665 This iron sulphur cluster is found at the N terminus of some proteins containing leucine-repeat variant (LRV) repeats (IPR004830 from INTERPRO). These proteins have a two-domain structure, composed of a small N-terminal domain containing a cluster of four Cys residues that houses the 4Fe:4S cluster, and a larger C-terminal domain containing the LRV repeats []. Biochemical studies revealed that the 4Fe:4S cluster is sensitive to oxygen, but does not appear to have reversible redox activity.; PDB: 1LRV_A.
Probab=42.48 E-value=13 Score=25.77 Aligned_cols=15 Identities=33% Similarity=0.866 Sum_probs=7.9
Q ss_pred CCCccccCCCCCCCC
Q 023870 242 LGDAFRCGTCPYKGL 256 (276)
Q Consensus 242 lGDAFRC~~CPy~G~ 256 (276)
.|=+-.|++|||..+
T Consensus 8 ~G~~vdC~~C~h~~l 22 (57)
T PF05484_consen 8 QGPPVDCAGCPHRDL 22 (57)
T ss_dssp ------TTTSTTCCC
T ss_pred CCCCcCCCCCcchhh
Confidence 477889999999964
No 268
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=41.75 E-value=14 Score=24.89 Aligned_cols=11 Identities=45% Similarity=1.340 Sum_probs=8.6
Q ss_pred CccccCCCCCC
Q 023870 244 DAFRCGTCPYK 254 (276)
Q Consensus 244 DAFRC~~CPy~ 254 (276)
|.|+|..|+|-
T Consensus 36 ~r~~C~~Cgyt 46 (50)
T PRK00432 36 DRWHCGKCGYT 46 (50)
T ss_pred CcEECCCcCCE
Confidence 68888888873
No 269
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=41.37 E-value=28 Score=32.40 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=21.3
Q ss_pred HHHHHHHHHhccCCcEEEEEecC
Q 023870 75 DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 75 ~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
..+|..+..+|+|||+|++..+.
T Consensus 220 ~~~L~~~~~~L~~gGrl~VISfH 242 (305)
T TIGR00006 220 EEALQFAPNLLAPGGRLSIISFH 242 (305)
T ss_pred HHHHHHHHHHhcCCCEEEEEecC
Confidence 78899999999999999999886
No 270
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=41.26 E-value=2.3e+02 Score=24.19 Aligned_cols=25 Identities=16% Similarity=0.101 Sum_probs=16.3
Q ss_pred cEEEEccCCCCcHHHHHHHHHHHHH
Q 023870 9 AVLALSEDKILPVSAVLNAIRDLGD 33 (276)
Q Consensus 9 ~vL~v~~~~~~~~~~v~~~m~~~A~ 33 (276)
+||+|....-.+.+.|.+.+.+-++
T Consensus 2 kilIiY~S~~G~T~~lA~~ia~g~~ 26 (197)
T TIGR01755 2 KVLVLYYSMYGHIETMARAVAEGAR 26 (197)
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 5777766665666667766666553
No 271
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=40.51 E-value=25 Score=32.78 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=21.5
Q ss_pred HHHHHHHHHhccCCcEEEEEecC
Q 023870 75 DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 75 ~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
+.+|..+.++|+|||+|.+..+.
T Consensus 224 ~~~L~~a~~~L~~gGRl~VIsFH 246 (314)
T COG0275 224 EEALEAALDLLKPGGRLAVISFH 246 (314)
T ss_pred HHHHHHHHHhhCCCcEEEEEEec
Confidence 78999999999999999999886
No 272
>PRK06756 flavodoxin; Provisional
Probab=39.46 E-value=2e+02 Score=22.99 Aligned_cols=110 Identities=13% Similarity=0.050 Sum_probs=56.9
Q ss_pred CcEEEEccCCCCcHHHHHHHHHHHHHHhhhhCCCCeEEEeccCCCCC--CCCCceeEEEecccccc---CCh--HHHHHH
Q 023870 8 SAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP--VESFSIDTVLSISSSHE---LPG--DQLLEE 80 (276)
Q Consensus 8 ~~vL~v~~~~~~~~~~v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp--~~~~sfD~V~s~~~l~~---~~~--~~~l~e 80 (276)
++|++++.....+-+.|.+.|.+..++ .+..+.. .++.+.+ ..-..||.|+.....+. ++. ..++.+
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~~----~g~~v~~--~~~~~~~~~~~~~~~d~vi~gspt~~~g~~p~~~~~fl~~ 75 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIRE----TENEIEV--IDIMDSPEASILEQYDGIILGAYTWGDGDLPDDFLDFYDA 75 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHhh----cCCeEEE--eehhccCCHHHHhcCCeEEEEeCCCCCCCCcHHHHHHHHH
Confidence 367888776666677777777665432 2333332 2333322 12346898887655443 332 445555
Q ss_pred HHHhccCCcEEEEEecCCCCchh-HHHHHHHHHHHHHHCCCcchh
Q 023870 81 ISRVLKPGGTILIYKKLTSDKGD-VDKAISALEGKLLLAGFLDAQ 124 (276)
Q Consensus 81 i~rvLKPgG~l~i~~~~~~~~~~-~~~~~~~l~~~l~laGF~~v~ 124 (276)
+.+ +...|+-+..-...++.+. ...+...+...|...||..+.
T Consensus 76 l~~-~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~ 119 (148)
T PRK06756 76 MDS-IDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVL 119 (148)
T ss_pred Hhc-CCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcC
Confidence 432 2334533322211111111 234455777888889988654
No 273
>PRK09271 flavodoxin; Provisional
Probab=39.34 E-value=2e+02 Score=23.58 Aligned_cols=74 Identities=14% Similarity=0.176 Sum_probs=40.8
Q ss_pred CcEEEEccCCCCcHHHHHHHHHHHHHHhhhhCCCCeEEEecc---CCCCCCCCCceeEEEeccccc---cCCh--HHHHH
Q 023870 8 SAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASS---LSQLPVESFSIDTVLSISSSH---ELPG--DQLLE 79 (276)
Q Consensus 8 ~~vL~v~~~~~~~~~~v~~~m~~~A~~~~~~~~~~v~~~~~d---~~~lp~~~~sfD~V~s~~~l~---~~~~--~~~l~ 79 (276)
++|++++.....+.+.|.+.+.+..++ .+..+.....+ +..++..-..+|+|+.....+ .+++ ..++.
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~----~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~ 76 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEE----AGHEVDWVETDVQTLAEYPLDPEDYDLYLLGTWTDNAGRTPPEMKRFIA 76 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHh----CCCeeEEEecccccccccccCcccCCEEEEECcccCCCcCCHHHHHHHH
Confidence 468888777767777777777766543 23333322221 222233344688887655322 2443 56666
Q ss_pred HHHHhc
Q 023870 80 EISRVL 85 (276)
Q Consensus 80 ei~rvL 85 (276)
.+...+
T Consensus 77 ~l~~~~ 82 (160)
T PRK09271 77 ELAETI 82 (160)
T ss_pred HHHHHh
Confidence 665543
No 274
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=39.23 E-value=1.1e+02 Score=28.39 Aligned_cols=66 Identities=11% Similarity=0.012 Sum_probs=43.9
Q ss_pred CCCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCC--CCeEEEeccCCCCCCCCCceeEEEeccc
Q 023870 3 TGKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSISS 68 (276)
Q Consensus 3 ~~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~--~~v~~~~~d~~~lp~~~~sfD~V~s~~~ 68 (276)
.+++++-||=++.|.+.--..+. +.|+...+++.+... ...+++.+|.-..++| .||+++++..
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~fd~cVsNlP 132 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RFDGCVSNLP 132 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--ccceeeccCC
Confidence 47889999999999863111111 445555555554433 3478889999887765 8999999765
Q ss_pred cc
Q 023870 69 SH 70 (276)
Q Consensus 69 l~ 70 (276)
++
T Consensus 133 yq 134 (315)
T KOG0820|consen 133 YQ 134 (315)
T ss_pred cc
Confidence 44
No 275
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=38.77 E-value=38 Score=27.17 Aligned_cols=13 Identities=23% Similarity=0.368 Sum_probs=9.9
Q ss_pred CCCCCCCeEEecC
Q 023870 257 PPFKLGEKVSLSS 269 (276)
Q Consensus 257 PaFkpGe~v~l~~ 269 (276)
...||||.|.+.-
T Consensus 50 ~~~~~GD~V~v~i 62 (135)
T PF04246_consen 50 IGAKVGDRVEVEI 62 (135)
T ss_pred CCCCCCCEEEEEe
Confidence 4578999998863
No 276
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=38.75 E-value=75 Score=31.42 Aligned_cols=48 Identities=25% Similarity=0.282 Sum_probs=35.3
Q ss_pred CCCCCC-CceeEEEeccccccCCh-----HHHHHHHHHhccCCcEEEEEecCCC
Q 023870 52 QLPVES-FSIDTVLSISSSHELPG-----DQLLEEISRVLKPGGTILIYKKLTS 99 (276)
Q Consensus 52 ~lp~~~-~sfD~V~s~~~l~~~~~-----~~~l~ei~rvLKPgG~l~i~~~~~~ 99 (276)
-+|... +.||+|++...+|++.+ ...-+.+.+..++||.+++.+.+..
T Consensus 266 ~~pi~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 266 RLPIDIKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred cCCCCcccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 345544 45999999998888764 3344556778899999999987754
No 277
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=38.58 E-value=2.5e+02 Score=23.92 Aligned_cols=82 Identities=15% Similarity=0.088 Sum_probs=45.5
Q ss_pred CcEEEEccCCCCcHHHHHHHHHHHHHHhhhhCCCCeEEEeccCCCCC-CCCCceeEEEeccccc--cCCh--HHHHHHHH
Q 023870 8 SAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP-VESFSIDTVLSISSSH--ELPG--DQLLEEIS 82 (276)
Q Consensus 8 ~~vL~v~~~~~~~~~~v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp-~~~~sfD~V~s~~~l~--~~~~--~~~l~ei~ 82 (276)
+++|++.......-+.+-+.+....++ .|..+.. .|+.... ..-+.||.|+...+++ |++. .+++..-.
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e----~g~qvdi--~dl~~~~~~~l~~ydavVIgAsI~~~h~~~~~~~Fv~k~~ 74 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRE----SGIQVDI--QDLHAVEEPALEDYDAVVIGASIRYGHFHEAVQSFVKKHA 74 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhh----cCCeeee--eehhhhhccChhhCceEEEecchhhhhhHHHHHHHHHHHH
Confidence 467888766655544444444333332 2333333 2332222 3456899999766543 3443 77888887
Q ss_pred Hhc--cCCcEEEEEe
Q 023870 83 RVL--KPGGTILIYK 95 (276)
Q Consensus 83 rvL--KPgG~l~i~~ 95 (276)
..| ||...|.+.-
T Consensus 75 e~L~~kP~A~f~vnl 89 (175)
T COG4635 75 EALSTKPSAFFSVNL 89 (175)
T ss_pred HHHhcCCceEEEeeh
Confidence 777 5666655443
No 278
>PF11575 FhuF_C: FhuF 2Fe-2S C-terminal domain; InterPro: IPR024726 Ferric iron reductase (FhuF) is involved in the reduction of ferric iron in cytoplasmic ferrioxamine B []. This entry represents the C-terminal domain that contains 4 conserved cysteine residues found to be part of a 2Fe-2S cluster [].; GO: 0051537 2 iron, 2 sulfur cluster binding
Probab=38.48 E-value=21 Score=19.90 Aligned_cols=12 Identities=42% Similarity=0.822 Sum_probs=8.0
Q ss_pred CCccccCCCCCC
Q 023870 243 GDAFRCGTCPYK 254 (276)
Q Consensus 243 GDAFRC~~CPy~ 254 (276)
-++-.|++||-+
T Consensus 11 ~~~~~C~~CP~~ 22 (22)
T PF11575_consen 11 PGGGYCGTCPLL 22 (22)
T ss_pred CCCCccCCCCCC
Confidence 455668888853
No 279
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=37.04 E-value=1.1e+02 Score=24.74 Aligned_cols=69 Identities=17% Similarity=0.159 Sum_probs=44.9
Q ss_pred CCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchhhhh
Q 023870 57 SFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQ 127 (276)
Q Consensus 57 ~~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~~~~ 127 (276)
++-.|+|+.-+--.--.-...|--+.+.|..+|.+.+.++.++..+... .+.+......+|++......
T Consensus 43 ddvvD~vllWwR~~DgDL~D~LvDa~~~L~d~G~IWvltPK~gr~g~V~--~~~I~eaA~taGL~~t~~~~ 111 (127)
T PF11253_consen 43 DDVVDVVLLWWRDDDGDLVDALVDARTNLADDGVIWVLTPKAGRPGHVE--PSDIREAAPTAGLVQTKSCA 111 (127)
T ss_pred cccccEEEEEEECCcchHHHHHHHHHhhhcCCCEEEEEccCCCCCCCCC--HHHHHHHHhhcCCeeeeeec
Confidence 4457777653211100116678888999999999999998776433221 13567788999999766543
No 280
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=36.72 E-value=1.5e+02 Score=28.05 Aligned_cols=88 Identities=16% Similarity=0.175 Sum_probs=52.1
Q ss_pred CCCCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCCCeEEEeccCCC---------CCCCCC
Q 023870 3 TGKMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDPQIITQASSLSQ---------LPVESF 58 (276)
Q Consensus 3 ~~~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~~v~~~~~d~~~---------lp~~~~ 58 (276)
.++.|++||+++.|.+.-..-.+ +.-+++|++ .+..+......... --+...
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~ 241 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK----FGATVTDPSSHKSSPQELAELVEKALGKK 241 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH----hCCeEEeeccccccHHHHHHHHHhhcccc
Confidence 57899999999888753211111 222344433 23332222222111 123445
Q ss_pred ceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCC
Q 023870 59 SIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS 99 (276)
Q Consensus 59 sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~ 99 (276)
.||+.+....++ ..++-....||+||.+++..+++.
T Consensus 242 ~~d~~~dCsG~~-----~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 242 QPDVTFDCSGAE-----VTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred CCCeEEEccCch-----HHHHHHHHHhccCCEEEEeccCCC
Confidence 588888765443 557777899999999999988764
No 281
>cd05794 S1_EF-P_repeat_2 S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P
Probab=36.58 E-value=24 Score=24.42 Aligned_cols=15 Identities=40% Similarity=0.782 Sum_probs=11.5
Q ss_pred CCCC-CCCCeEEecCc
Q 023870 256 LPPF-KLGEKVSLSSN 270 (276)
Q Consensus 256 ~PaF-kpGe~v~l~~~ 270 (276)
-|.| +.||+|+++.+
T Consensus 34 VP~FI~~Gd~I~V~T~ 49 (56)
T cd05794 34 VPLFIKEGEKIKVDTR 49 (56)
T ss_pred cCCeecCCCEEEEECC
Confidence 4778 88888888754
No 282
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=36.27 E-value=37 Score=31.46 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=21.2
Q ss_pred HHHHHHHHHhccCCcEEEEEecC
Q 023870 75 DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 75 ~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
..+|..+..+|+|||++++..+.
T Consensus 216 ~~~L~~~~~~L~~gGrl~visfH 238 (296)
T PRK00050 216 ERALEAALDLLKPGGRLAVISFH 238 (296)
T ss_pred HHHHHHHHHHhcCCCEEEEEecC
Confidence 77899999999999999999886
No 283
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=35.43 E-value=1.4e+02 Score=21.71 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=29.7
Q ss_pred cEEEEccCCCCcHHHHHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecc
Q 023870 9 AVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSIS 67 (276)
Q Consensus 9 ~vL~v~~~~~~~~~~v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~ 67 (276)
+++++-+.....+.-+...+.+..++ .+....+...++..+. +.+|+|++..
T Consensus 2 kilvvCg~G~gtS~ml~~ki~~~~~~----~~~~~~v~~~~~~~~~---~~~Dliitt~ 53 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLRKKLKK----AGLEIPVTNSAIDELP---SDADLVVTHA 53 (87)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHH----CCCceEEEEcchhhCC---CCCCEEEECh
Confidence 46666544333233234444444432 3455566667777665 6799999875
No 284
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=34.69 E-value=96 Score=23.32 Aligned_cols=55 Identities=4% Similarity=0.104 Sum_probs=30.1
Q ss_pred cEEEEccCCCCcHHHHHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecc
Q 023870 9 AVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSIS 67 (276)
Q Consensus 9 ~vL~v~~~~~~~~~~v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~ 67 (276)
++|++-......+--+...+.+..++ .+..+.+.+.++.+++-....+|+|++..
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~----~gi~~~v~~~~~~e~~~~~~~~D~iv~t~ 58 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQS----HNIPVELIQCRVNEIETYMDGVHLICTTA 58 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHH----CCCeEEEEEecHHHHhhhcCCCCEEEECC
Confidence 46666333322222224555554433 45667777777766543226789998764
No 285
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=34.23 E-value=32 Score=32.11 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=21.5
Q ss_pred HHHHHHHHHhccCCcEEEEEecC
Q 023870 75 DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 75 ~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
+.+|..+..+|+|||++++..+.
T Consensus 221 ~~~L~~a~~~L~~gGrl~VISFH 243 (310)
T PF01795_consen 221 ERGLEAAPDLLKPGGRLVVISFH 243 (310)
T ss_dssp HHHHHHHHHHEEEEEEEEEEESS
T ss_pred HHHHHHHHHHhcCCcEEEEEEec
Confidence 78999999999999999999987
No 286
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=33.93 E-value=4e+02 Score=24.92 Aligned_cols=66 Identities=12% Similarity=0.038 Sum_probs=40.1
Q ss_pred CCCcEEEEccCCCC--c------------HHHHHHHHHHHHHHhhhhC-CC--CeEEE-eccCCCCC----CCCCceeEE
Q 023870 6 MQSAVLALSEDKIL--P------------VSAVLNAIRDLGDEAVEQC-DP--QIITQ-ASSLSQLP----VESFSIDTV 63 (276)
Q Consensus 6 ~g~~vL~v~~~~~~--~------------~~~v~~~m~~~A~~~~~~~-~~--~v~~~-~~d~~~lp----~~~~sfD~V 63 (276)
.+.++|+|+.|... + +-++.+.+++.|++.+... +. .|.+. +.+...+. .+.+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 45788999888641 1 0122367788888877655 33 35553 33333321 246789999
Q ss_pred Eecccccc
Q 023870 64 LSISSSHE 71 (276)
Q Consensus 64 ~s~~~l~~ 71 (276)
+|+-.+|.
T Consensus 194 vcNPPf~~ 201 (321)
T PRK11727 194 LCNPPFHA 201 (321)
T ss_pred EeCCCCcC
Confidence 99876654
No 287
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=32.78 E-value=19 Score=29.89 Aligned_cols=12 Identities=42% Similarity=0.764 Sum_probs=9.8
Q ss_pred CCCCCCCeEEec
Q 023870 257 PPFKLGEKVSLS 268 (276)
Q Consensus 257 PaFkpGe~v~l~ 268 (276)
=|.+|||+|.|.
T Consensus 57 ~pL~~Gq~VeiG 68 (150)
T COG3086 57 EPLEPGQKVELG 68 (150)
T ss_pred CcCCCCCEEEEc
Confidence 368999999885
No 288
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=32.66 E-value=1.6e+02 Score=26.48 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=23.9
Q ss_pred CceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEe
Q 023870 58 FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 95 (276)
Q Consensus 58 ~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~ 95 (276)
..+|+++.... ....+.++.+.|+++|++++..
T Consensus 224 ~~vD~vi~~~~-----~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 224 EPLDAAIIFAP-----VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred CcccEEEEcCC-----cHHHHHHHHHHhhcCCEEEEEc
Confidence 45787765321 1357899999999999999754
No 289
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=32.40 E-value=72 Score=29.54 Aligned_cols=74 Identities=14% Similarity=0.034 Sum_probs=49.3
Q ss_pred CCCCcEEEEccCCCCcHHHHH---------------HHHHHHHHHhhhhCCCCeEEEeccCCCCC--CCCC--ceeEEEe
Q 023870 5 KMQSAVLALSEDKILPVSAVL---------------NAIRDLGDEAVEQCDPQIITQASSLSQLP--VESF--SIDTVLS 65 (276)
Q Consensus 5 ~~g~~vL~v~~~~~~~~~~v~---------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp--~~~~--sfD~V~s 65 (276)
++|..+++.|-|.+.....+. +.|++.|+++... ..++.+++++..++. ++.+ +||.|+.
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~ 96 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNLKEVLAEGLGKVDGILL 96 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHHHHHHHcCCCccCEEEE
Confidence 567788999888876644333 7788888877654 456899999988764 2222 7999998
Q ss_pred cc--ccccCCh-HHHHH
Q 023870 66 IS--SSHELPG-DQLLE 79 (276)
Q Consensus 66 ~~--~l~~~~~-~~~l~ 79 (276)
-. +.+++.+ +..++
T Consensus 97 DLGvSs~Qld~~~RGFS 113 (296)
T PRK00050 97 DLGVSSPQLDDAERGFS 113 (296)
T ss_pred CCCccccccCCCcCCcc
Confidence 54 2344444 44443
No 290
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=32.11 E-value=31 Score=22.50 Aligned_cols=18 Identities=50% Similarity=1.359 Sum_probs=13.4
Q ss_pred CCCCCC------CCccccCCCCCC
Q 023870 237 CGSCGL------GDAFRCGTCPYK 254 (276)
Q Consensus 237 Cg~C~l------GDAFRC~~CPy~ 254 (276)
||+|.- +|..||--|=|.
T Consensus 5 C~~Cg~~~~~~~~~~irC~~CG~r 28 (44)
T smart00659 5 CGECGRENEIKSKDVVRCRECGYR 28 (44)
T ss_pred CCCCCCEeecCCCCceECCCCCce
Confidence 566653 899999888765
No 291
>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]
Probab=31.82 E-value=19 Score=27.90 Aligned_cols=10 Identities=60% Similarity=1.477 Sum_probs=9.3
Q ss_pred ccccCCCCCC
Q 023870 245 AFRCGTCPYK 254 (276)
Q Consensus 245 AFRC~~CPy~ 254 (276)
.|-|.+|||.
T Consensus 21 rf~C~tCpY~ 30 (105)
T KOG2906|consen 21 RFSCRTCPYV 30 (105)
T ss_pred eEEcCCCCce
Confidence 6999999997
No 292
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=31.64 E-value=83 Score=28.51 Aligned_cols=71 Identities=18% Similarity=0.179 Sum_probs=46.8
Q ss_pred eEEEeccCC-CCCCCCC---ceeEEEec-cccccCC---hHHHHHHHHHhccCCcEEEEEecCCCCchhHHHHHHHHHHH
Q 023870 43 IITQASSLS-QLPVESF---SIDTVLSI-SSSHELP---GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGK 114 (276)
Q Consensus 43 v~~~~~d~~-~lp~~~~---sfD~V~s~-~~l~~~~---~~~~l~ei~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~ 114 (276)
...+.+|+. .+|--+. .+|+++.- ++..--| ..+++.++++..+|||++.-.... ..+++.
T Consensus 148 l~l~~gd~~~~~p~~~~~~~~~dAwflDgFsP~kNP~mW~~e~l~~~a~~~~~~~~l~t~ssA-----------~~vRr~ 216 (252)
T COG4121 148 LGLVIGDAGDGIPPVPRRRPGTDAWFLDGFRPVKNPEMWEDELLNLMARIPYRDPTLATFAAA-----------IAVRRR 216 (252)
T ss_pred eeeeeeehhhcCCcccccccCccEEecCCccccCChhhccHHHHHHHHhhcCCCCceechHHH-----------HHHHHH
Confidence 556677774 3443344 68998862 2211111 268999999999999999833211 156788
Q ss_pred HHHCCCcchh
Q 023870 115 LLLAGFLDAQ 124 (276)
Q Consensus 115 l~laGF~~v~ 124 (276)
|..+||....
T Consensus 217 L~~aGF~v~~ 226 (252)
T COG4121 217 LEQAGFTVEK 226 (252)
T ss_pred HHHcCceeee
Confidence 9999998654
No 293
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=31.58 E-value=35 Score=19.01 Aligned_cols=15 Identities=20% Similarity=0.483 Sum_probs=11.8
Q ss_pred CCCCCCeEEecCccc
Q 023870 258 PFKLGEKVSLSSNFL 272 (276)
Q Consensus 258 aFkpGe~v~l~~~~l 272 (276)
.|++|++|.+....+
T Consensus 1 ~~~~G~~V~I~~G~~ 15 (28)
T smart00739 1 KFEVGDTVRVIAGPF 15 (28)
T ss_pred CCCCCCEEEEeECCC
Confidence 489999999876544
No 294
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=30.24 E-value=1e+02 Score=27.93 Aligned_cols=77 Identities=16% Similarity=0.138 Sum_probs=42.2
Q ss_pred EEEeccCCCCCC-C-CCceeEEEeccccccC------------------C--h--HHHHHHHHHhccCCcEEEEEecCCC
Q 023870 44 ITQASSLSQLPV-E-SFSIDTVLSISSSHEL------------------P--G--DQLLEEISRVLKPGGTILIYKKLTS 99 (276)
Q Consensus 44 ~~~~~d~~~lp~-~-~~sfD~V~s~~~l~~~------------------~--~--~~~l~ei~rvLKPgG~l~i~~~~~~ 99 (276)
....+|.-..+. . ...||+|+++-.+-.. + . -.++..+.+.||+||++.+..+..
T Consensus 108 ~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~- 186 (311)
T PF02384_consen 108 NIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG- 186 (311)
T ss_dssp EEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH-
T ss_pred cccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch-
Confidence 355566544333 2 5789999996432111 0 1 258899999999999998777542
Q ss_pred CchhHHHHHHHHHHHHHHCCCcc
Q 023870 100 DKGDVDKAISALEGKLLLAGFLD 122 (276)
Q Consensus 100 ~~~~~~~~~~~l~~~l~laGF~~ 122 (276)
.+.. ......+++.|...+.+.
T Consensus 187 ~L~~-~~~~~~iR~~ll~~~~i~ 208 (311)
T PF02384_consen 187 FLFS-SSSEKKIRKYLLENGYIE 208 (311)
T ss_dssp HHHG-STHHHHHHHHHHHHEEEE
T ss_pred hhhc-cchHHHHHHHHHhhchhh
Confidence 1100 001235666676666654
No 295
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=29.40 E-value=1.8e+02 Score=27.41 Aligned_cols=85 Identities=12% Similarity=0.062 Sum_probs=52.7
Q ss_pred CcEEEEccCCCCcHHHH------------HHHHHHHHHHhhhhCCC-CeEEEeccCCCC-C-CC--------------CC
Q 023870 8 SAVLALSEDKILPVSAV------------LNAIRDLGDEAVEQCDP-QIITQASSLSQL-P-VE--------------SF 58 (276)
Q Consensus 8 ~~vL~v~~~~~~~~~~v------------~~~m~~~A~~~~~~~~~-~v~~~~~d~~~l-p-~~--------------~~ 58 (276)
.+||++..|.+.-+-.+ ...|++.|++++...+. ++.++.+|+.+. + +. ..
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~ 287 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSY 287 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccCC
Confidence 56999988886322112 16777888877765555 588999998653 1 11 22
Q ss_pred ceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEec
Q 023870 59 SIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK 96 (276)
Q Consensus 59 sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~ 96 (276)
.||+|+.--.-..+ ...+++.+.+ |++.++++..
T Consensus 288 ~~D~v~lDPPR~G~-~~~~l~~l~~---~~~ivyvSC~ 321 (362)
T PRK05031 288 NFSTIFVDPPRAGL-DDETLKLVQA---YERILYISCN 321 (362)
T ss_pred CCCEEEECCCCCCC-cHHHHHHHHc---cCCEEEEEeC
Confidence 58999885432211 1455565554 7888887763
No 296
>COG4353 Uncharacterized conserved protein [Function unknown]
Probab=29.19 E-value=74 Score=26.97 Aligned_cols=69 Identities=22% Similarity=0.265 Sum_probs=42.8
Q ss_pred HHHHHHHHHhccCCcEEEEEecCCC-CchhHHH----HHHHHHHHHHHCCCcchhhhhcccccCCce--eEEEEeeccCC
Q 023870 75 DQLLEEISRVLKPGGTILIYKKLTS-DKGDVDK----AISALEGKLLLAGFLDAQRIQLKSVVPAEV--VSFGVKGKKPT 147 (276)
Q Consensus 75 ~~~l~ei~rvLKPgG~l~i~~~~~~-~~~~~~~----~~~~l~~~l~laGF~~v~~~~~~~~~~~~~--~~~~i~akKP~ 147 (276)
..++.-+++.|-|||.|++.-.... +...+.+ ..+.|--.|..+||+-...|.. |.+. ..-.++|.||-
T Consensus 73 ~~l~~~l~~~lspg~~lfVeYv~DrET~~~lqkG~~p~atrLGfeL~k~GftwfkdWY~----PEG~mEGg~KlQAeKp~ 148 (192)
T COG4353 73 VKLYKVLYNFLSPGGKLFVEYVRDRETRYRLQKGKPPVATRLGFELLKAGFTWFKDWYF----PEGGMEGGPKLQAEKPI 148 (192)
T ss_pred HHHHHHHHHhcCCCCceEEEEEechhHHHHHHcCCCCccchhhHHHHhCcceeeeeeec----cCccccccccccccCCC
Confidence 5788889999999999987654321 2211111 1234556789999997776653 2222 22346778875
No 297
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=29.17 E-value=68 Score=30.08 Aligned_cols=56 Identities=14% Similarity=0.268 Sum_probs=46.2
Q ss_pred eEEEeccCCCCC--CCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecCC
Q 023870 43 IITQASSLSQLP--VESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKLT 98 (276)
Q Consensus 43 v~~~~~d~~~lp--~~~~sfD~V~s~~~l~~~~~---~~~l~ei~rvLKPgG~l~i~~~~~ 98 (276)
|..+.+++..+- -+.+++|.++..-+-.|+++ ++++.+|.|-+.||..+++.+...
T Consensus 309 V~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRtaae 369 (414)
T COG5379 309 VAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRTAAE 369 (414)
T ss_pred eeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEecccc
Confidence 667777775543 36789999998888888886 889999999999999999988653
No 298
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=29.02 E-value=3.4e+02 Score=26.50 Aligned_cols=41 Identities=17% Similarity=0.319 Sum_probs=28.4
Q ss_pred CCceeEEEecccc-ccCCh--HHHHHHHHHhccCCcEEEEEecC
Q 023870 57 SFSIDTVLSISSS-HELPG--DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 57 ~~sfD~V~s~~~l-~~~~~--~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
.+.||+|+.=.+- ++... -.-+.++.++++|.+++++.+..
T Consensus 180 ~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~ 223 (428)
T TIGR00959 180 ENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAM 223 (428)
T ss_pred hcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEecc
Confidence 4568988874433 33333 44566778899999999888854
No 299
>PHA01519 hypothetical protein
Probab=29.01 E-value=24 Score=27.86 Aligned_cols=13 Identities=31% Similarity=0.281 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCe
Q 023870 252 PYKGLPPFKLGEK 264 (276)
Q Consensus 252 Py~G~PaFkpGe~ 264 (276)
++.|+|+||||+.
T Consensus 21 ~~~g~~~~~~~~~ 33 (115)
T PHA01519 21 IFKGLWACKPETS 33 (115)
T ss_pred HhccCcccccccc
Confidence 5679999999975
No 300
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=28.99 E-value=36 Score=23.21 Aligned_cols=11 Identities=55% Similarity=0.924 Sum_probs=9.7
Q ss_pred CCCCCeEEecC
Q 023870 259 FKLGEKVSLSS 269 (276)
Q Consensus 259 FkpGe~v~l~~ 269 (276)
||+|+.|+|-+
T Consensus 1 f~~GDvV~LKS 11 (53)
T PF09926_consen 1 FKIGDVVQLKS 11 (53)
T ss_pred CCCCCEEEEcc
Confidence 89999999964
No 301
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=28.99 E-value=45 Score=28.07 Aligned_cols=46 Identities=13% Similarity=0.050 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEecccc
Q 023870 24 VLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSS 69 (276)
Q Consensus 24 v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l 69 (276)
+-+..++++++++....+++.++++++..+-+....||.++.+-.+
T Consensus 79 IdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 79 IDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred cCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 3478888888888887888899999999998888999999987654
No 302
>PF12225 MTHFR_C: Methylene-tetrahydrofolate reductase C terminal; InterPro: IPR022026 This family is found in bacteria and archaea, and is approximately 100 amino acids in length. There is a conserved NGPCGG sequence motif. This family is the C-terminal of methylene-tetrahydrofolate reductase. This protein reduces FAD using the reducing equivalents from reduced FAD, subsequently reduces tetrahydrofolate. The C-terminal of MTHFR contains the FAD binding site and is the catalytic portion of the enzyme.
Probab=28.81 E-value=27 Score=26.97 Aligned_cols=12 Identities=58% Similarity=1.179 Sum_probs=10.4
Q ss_pred CCCCCCCCCCCc
Q 023870 234 QSACGSCGLGDA 245 (276)
Q Consensus 234 ~ssCg~C~lGDA 245 (276)
=.+||.|+|++-
T Consensus 23 C~~CG~C~L~~T 34 (97)
T PF12225_consen 23 CRACGDCVLGDT 34 (97)
T ss_pred CCCCCCcccccc
Confidence 589999999983
No 303
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=28.68 E-value=68 Score=30.21 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=29.6
Q ss_pred CceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecC
Q 023870 58 FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 58 ~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
..||.|+....-..-..+-.|.++.+.|+|||.+++.-..
T Consensus 75 ~~~d~~~~~~pk~k~~~~~~l~~~~~~l~~g~~i~~~G~~ 114 (342)
T PRK09489 75 ADCDTLIYYWPKNKQEAQFQLMNLLSLLPVGTDIFVVGEN 114 (342)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEEEEec
Confidence 5799988765432222267889999999999999987644
No 304
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=28.60 E-value=1.5e+02 Score=26.34 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=21.0
Q ss_pred CceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEe
Q 023870 58 FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 95 (276)
Q Consensus 58 ~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~ 95 (276)
..||+++++.. ..+..+.+.|+| |.+++.-
T Consensus 142 ~~~DvsfiS~~-------~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 142 ATFDVSFISLI-------SILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred eeeeEEEeehH-------hHHHHHHHHhCc-CeEEEEc
Confidence 36787766543 247889999999 7776543
No 305
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=27.64 E-value=1.1e+02 Score=23.72 Aligned_cols=77 Identities=10% Similarity=0.078 Sum_probs=44.4
Q ss_pred cEEEEccCCCCcHHHHHHHHHHHHHHhhhhCCCCeEEEeccCCCCCC--CCCceeEEEeccccccCChHHHHHHHHHhcc
Q 023870 9 AVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPV--ESFSIDTVLSISSSHELPGDQLLEEISRVLK 86 (276)
Q Consensus 9 ~vL~v~~~~~~~~~~v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~--~~~sfD~V~s~~~l~~~~~~~~l~ei~rvLK 86 (276)
++|++-.+.. ...-+...|.+.+++ .+..+.+.+.++.+++- ....||+|+..--. +-.+.++...+.
T Consensus 3 kILlvCg~G~-STSlla~k~k~~~~e----~gi~~~i~a~~~~e~~~~~~~~~~DvIll~PQi-----~~~~~~i~~~~~ 72 (104)
T PRK09590 3 KALIICAAGM-SSSMMAKKTTEYLKE----QGKDIEVDAITATEGEKAIAAAEYDLYLVSPQT-----KMYFKQFEEAGA 72 (104)
T ss_pred EEEEECCCch-HHHHHHHHHHHHHHH----CCCceEEEEecHHHHHHhhccCCCCEEEEChHH-----HHHHHHHHHHhh
Confidence 4666644443 344566777666655 35667776676666542 23469999876311 234566777776
Q ss_pred CCcE-EEEEe
Q 023870 87 PGGT-ILIYK 95 (276)
Q Consensus 87 PgG~-l~i~~ 95 (276)
+.|. +.+.+
T Consensus 73 ~~~ipv~~I~ 82 (104)
T PRK09590 73 KVGKPVVQIP 82 (104)
T ss_pred hcCCCEEEeC
Confidence 5544 44444
No 306
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=27.47 E-value=1.5e+02 Score=27.65 Aligned_cols=39 Identities=26% Similarity=0.401 Sum_probs=31.3
Q ss_pred ceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecC
Q 023870 59 SIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 59 sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
.||+|+....-|--..+..|.++++.|.|||.+++.-..
T Consensus 37 ~~d~~l~~~pK~~~e~e~qLa~ll~~~~~g~~i~v~g~~ 75 (300)
T COG2813 37 DFDAVLLYWPKHKAEAEFQLAQLLARLPPGGEIVVVGEK 75 (300)
T ss_pred CCCEEEEEccCchHHHHHHHHHHHhhCCCCCeEEEEecc
Confidence 899999876555444477899999999999999987543
No 307
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=27.07 E-value=15 Score=25.96 Aligned_cols=8 Identities=88% Similarity=1.601 Sum_probs=6.6
Q ss_pred cccCCCCC
Q 023870 202 TRKACKNC 209 (276)
Q Consensus 202 ~~kack~c 209 (276)
..||||||
T Consensus 3 ~~kAC~~C 10 (64)
T COG2093 3 TEKACKNC 10 (64)
T ss_pred hhHHHhhc
Confidence 46899998
No 308
>PRK08537 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated
Probab=26.99 E-value=1.7e+02 Score=24.36 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=22.2
Q ss_pred CceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEe
Q 023870 58 FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 95 (276)
Q Consensus 58 ~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~ 95 (276)
...|++++.. +..+.....-|||||++++-.
T Consensus 66 ~~~D~lval~-------~~~~~~~~~~l~~~g~vi~n~ 96 (177)
T PRK08537 66 ISPDILVAMS-------QEAYDKYLDDLKEGGTVIVDP 96 (177)
T ss_pred CCCCEEEEeC-------HHHHHHHHhccCCCeEEEEEC
Confidence 4578888764 233456678899999998764
No 309
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=26.92 E-value=2.4e+02 Score=26.54 Aligned_cols=85 Identities=9% Similarity=0.026 Sum_probs=52.1
Q ss_pred CcEEEEccCCCCcHHH------------HHHHHHHHHHHhhhhCCC-CeEEEeccCCCC-C-------C---C-----CC
Q 023870 8 SAVLALSEDKILPVSA------------VLNAIRDLGDEAVEQCDP-QIITQASSLSQL-P-------V---E-----SF 58 (276)
Q Consensus 8 ~~vL~v~~~~~~~~~~------------v~~~m~~~A~~~~~~~~~-~v~~~~~d~~~l-p-------~---~-----~~ 58 (276)
.+||.+..|.+.-+-. ..+.|++.|++++...+. ++.++.+|+..+ + + . ..
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSY 278 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccC
Confidence 4699998888632111 127788888887766555 488999988753 1 1 0 12
Q ss_pred ceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEec
Q 023870 59 SIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK 96 (276)
Q Consensus 59 sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~ 96 (276)
.||+|+.--.-..+ ...++..+.+ |++.++++..
T Consensus 279 ~~d~v~lDPPR~G~-~~~~l~~l~~---~~~ivYvsC~ 312 (353)
T TIGR02143 279 NCSTIFVDPPRAGL-DPDTCKLVQA---YERILYISCN 312 (353)
T ss_pred CCCEEEECCCCCCC-cHHHHHHHHc---CCcEEEEEcC
Confidence 37988874331111 1455555544 7888888763
No 310
>TIGR03601 B_an_ocin probable heterocycle-containing bacteriocin, BA_2677 family. Numerous bacteria encode systems for producing bacteriocins by extensive modification of ribosomally produced precursors. These proteins are recognizable in part by proximity to the modification proteins, and in part by small size, with leader peptide-like N-terminal sequence followed by low-complexity sequence rich in Cys, Gly, and/or Ser. This protein family represents a probable member of the class, though previously unrecognized because it is not encoded adjacent to its modification proteins.
Probab=26.65 E-value=42 Score=24.27 Aligned_cols=6 Identities=67% Similarity=1.553 Sum_probs=2.5
Q ss_pred cccCCC
Q 023870 246 FRCGTC 251 (276)
Q Consensus 246 FRC~~C 251 (276)
|||.+|
T Consensus 60 ~rCgGC 65 (79)
T TIGR03601 60 GRCGGC 65 (79)
T ss_pred ccccCc
Confidence 444444
No 311
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=26.59 E-value=1.6e+02 Score=26.83 Aligned_cols=28 Identities=4% Similarity=-0.184 Sum_probs=22.3
Q ss_pred CcEEEEccCCCCcHHHHHHHHHHHHHHh
Q 023870 8 SAVLALSEDKILPVSAVLNAIRDLGDEA 35 (276)
Q Consensus 8 ~~vL~v~~~~~~~~~~v~~~m~~~A~~~ 35 (276)
+++|.++|=.+.+.+.++..++...++.
T Consensus 1 m~ilfiGDi~G~~Gr~~l~~~L~~lk~~ 28 (266)
T TIGR00282 1 IKFLFIGDVYGKAGRKIVKNNLPQLKSK 28 (266)
T ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 4789999999888888888887776654
No 312
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=26.36 E-value=1.7e+02 Score=21.69 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=25.7
Q ss_pred HHHHHHHHHhcc-CCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcch
Q 023870 75 DQLLEEISRVLK-PGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA 123 (276)
Q Consensus 75 ~~~l~ei~rvLK-PgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v 123 (276)
-..|.++++.++ .|+.+++....+ .+.+.+..+||...
T Consensus 57 l~~L~~l~~~~~~~g~~l~l~~~~~-----------~v~~~l~~~gl~~~ 95 (100)
T cd06844 57 TGVLLERSRLAEAVGGQFVLTGISP-----------AVRITLTESGLDKG 95 (100)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCH-----------HHHHHHHHhCchhh
Confidence 455666666554 688898887652 55567888888753
No 313
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=26.08 E-value=1.7e+02 Score=26.84 Aligned_cols=33 Identities=12% Similarity=0.173 Sum_probs=24.6
Q ss_pred ceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEec
Q 023870 59 SIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK 96 (276)
Q Consensus 59 sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~ 96 (276)
.||+|+-... ....+....+.|++||++++.-.
T Consensus 235 ~~D~vid~~G-----~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 235 YFDVSFEVSG-----HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CCCEEEECCC-----CHHHHHHHHHHhhcCCEEEEEcc
Confidence 4788876542 23567889999999999987754
No 314
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=25.79 E-value=2.3e+02 Score=19.54 Aligned_cols=52 Identities=13% Similarity=0.192 Sum_probs=29.8
Q ss_pred CCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEE
Q 023870 40 DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIY 94 (276)
Q Consensus 40 ~~~v~~~~~d~~~lp~~~~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~ 94 (276)
+..+.......+.++-.+.+ ++.+.....+....-++++.+.+..||.+++.
T Consensus 18 g~~v~~~~~~~~~l~~~~~t---ll~i~~~~~~~~~~~~~~l~~~v~~G~~lvl~ 69 (70)
T PF14258_consen 18 GVKVERWRKPYEALEADDGT---LLVIGPDLRLSEPEEAEALLEWVEAGNTLVLA 69 (70)
T ss_pred CCeeEEecccHHHhCCCCCE---EEEEeCCCCCCchHHHHHHHHHHHcCCEEEEe
Confidence 45555444445555433333 33322222232236678899999999999975
No 315
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=25.51 E-value=29 Score=21.42 Aligned_cols=8 Identities=50% Similarity=1.302 Sum_probs=5.9
Q ss_pred ccCCCCCC
Q 023870 247 RCGTCPYK 254 (276)
Q Consensus 247 RC~~CPy~ 254 (276)
+|.+|||.
T Consensus 22 ~C~~C~Y~ 29 (35)
T PF02150_consen 22 ACRTCGYE 29 (35)
T ss_dssp EESSSS-E
T ss_pred CCCCCCCc
Confidence 79999995
No 316
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=25.29 E-value=4.2e+02 Score=22.42 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=16.0
Q ss_pred cEEEEccCCCCcHHHHHHHHHHHHH
Q 023870 9 AVLALSEDKILPVSAVLNAIRDLGD 33 (276)
Q Consensus 9 ~vL~v~~~~~~~~~~v~~~m~~~A~ 33 (276)
+|++|....-.+.+.|.+.+.+.++
T Consensus 3 kilIvy~S~~G~T~~lA~~ia~g~~ 27 (200)
T PRK03767 3 KVLVLYYSMYGHIETMAEAVAEGAR 27 (200)
T ss_pred eEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 6777766665556666666666554
No 317
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=25.23 E-value=2.3e+02 Score=25.43 Aligned_cols=35 Identities=23% Similarity=0.478 Sum_probs=25.4
Q ss_pred CCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEec
Q 023870 57 SFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK 96 (276)
Q Consensus 57 ~~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~~ 96 (276)
...+|+|+.... ....+.++.+.|+++|+++....
T Consensus 224 ~~~vd~v~~~~~-----~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 224 PYGFDVVIEATG-----VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred CCCCcEEEECCC-----ChHHHHHHHHHHhcCCEEEEEec
Confidence 345888876432 13578889999999999987654
No 318
>PRK05568 flavodoxin; Provisional
Probab=24.19 E-value=3.5e+02 Score=21.13 Aligned_cols=106 Identities=15% Similarity=0.042 Sum_probs=52.7
Q ss_pred cEEEEccCCCCcHHHHHHHHHHHHHHhhhhCCCCeEEEeccCCCCCC-CCCceeEEEeccccccCC-----h-HHHHHHH
Q 023870 9 AVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPV-ESFSIDTVLSISSSHELP-----G-DQLLEEI 81 (276)
Q Consensus 9 ~vL~v~~~~~~~~~~v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~-~~~sfD~V~s~~~l~~~~-----~-~~~l~ei 81 (276)
+++++......+-+.|.+.+.+.+++ .+..+.. .++.+.+. .-..+|.|+..+..++.. . ..++.++
T Consensus 3 ~~~IvY~S~~GnT~~~a~~i~~~~~~----~g~~v~~--~~~~~~~~~~~~~~d~iilgsp~y~~~~~~~~~~~~f~~~~ 76 (142)
T PRK05568 3 KINIIYWSGTGNTEAMANLIAEGAKE----NGAEVKL--LNVSEASVDDVKGADVVALGSPAMGDEVLEEGEMEPFVESI 76 (142)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHH----CCCeEEE--EECCCCCHHHHHhCCEEEEECCccCcccccchhHHHHHHHh
Confidence 57777766666777777777775533 2333333 24444332 234688888765543321 2 4555555
Q ss_pred HHhccCCcEEEEEecCCCCchhHHHHHHHHHHHHHHCCCcchh
Q 023870 82 SRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ 124 (276)
Q Consensus 82 ~rvLKPgG~l~i~~~~~~~~~~~~~~~~~l~~~l~laGF~~v~ 124 (276)
...++..-.+++...+.+ .. .....+...+...||..+.
T Consensus 77 ~~~~~~k~~~~f~t~G~~-~~---~~~~~~~~~l~~~g~~~~~ 115 (142)
T PRK05568 77 SSLVKGKKLVLFGSYGWG-DG---EWMRDWVERMEGYGANLVN 115 (142)
T ss_pred hhhhCCCEEEEEEccCCC-CC---hHHHHHHHHHHHCCCEEeC
Confidence 433331112233332211 01 1223555566777776544
No 319
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=24.12 E-value=2.2e+02 Score=24.75 Aligned_cols=88 Identities=13% Similarity=0.073 Sum_probs=49.1
Q ss_pred HHHHHHHHhhhhCC--CCeEEEeccCCCCCCCCCc-eeEEEeccc-cccCChHHHHHHHHHhccCCcEEEEEecCCCCch
Q 023870 27 AIRDLGDEAVEQCD--PQIITQASSLSQLPVESFS-IDTVLSISS-SHELPGDQLLEEISRVLKPGGTILIYKKLTSDKG 102 (276)
Q Consensus 27 ~m~~~A~~~~~~~~--~~v~~~~~d~~~lp~~~~s-fD~V~s~~~-l~~~~~~~~l~ei~rvLKPgG~l~i~~~~~~~~~ 102 (276)
.-++.|++.+...+ ..+.+..+|..+ +++.+. .|+|+..-+ -.. -.+.|.+....++..-.|+++....
T Consensus 32 gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGMGG~l--I~~ILe~~~~~~~~~~~lILqP~~~---- 104 (205)
T PF04816_consen 32 GPLEKAKENIAKYGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAGMGGEL--IIEILEAGPEKLSSAKRLILQPNTH---- 104 (205)
T ss_dssp HHHHHHHHHHHHTT-TTTEEEEE-SGGG-G--GGG---EEEEEEE-HHH--HHHHHHHTGGGGTT--EEEEEESS-----
T ss_pred HHHHHHHHHHHHcCCcccEEEEECCccc-ccCCCCCCCEEEEecCCHHH--HHHHHHhhHHHhccCCeEEEeCCCC----
Confidence 33445555555544 348888888543 233433 788776432 110 1456777777777777888876542
Q ss_pred hHHHHHHHHHHHHHHCCCcchhhh
Q 023870 103 DVDKAISALEGKLLLAGFLDAQRI 126 (276)
Q Consensus 103 ~~~~~~~~l~~~l~laGF~~v~~~ 126 (276)
...++++|..+||.-+.+.
T Consensus 105 -----~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 105 -----AYELRRWLYENGFEIIDED 123 (205)
T ss_dssp -----HHHHHHHHHHTTEEEEEEE
T ss_pred -----hHHHHHHHHHCCCEEEEeE
Confidence 1267889999999866554
No 320
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=24.06 E-value=2.4e+02 Score=19.22 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=27.0
Q ss_pred EEEEccCCCCcHHHHHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCCceeEEEeccc
Q 023870 10 VLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISS 68 (276)
Q Consensus 10 vL~v~~~~~~~~~~v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~s~~~ 68 (276)
++++.+.....+.-+...+.+.. ...+....+...++..+ .....||+|++...
T Consensus 2 il~vc~~G~~~s~~l~~~l~~~~----~~~~~~~~~~~~~~~~~-~~~~~~dliitt~~ 55 (84)
T cd00133 2 ILVVCGSGIGSSSMLAEKLEKAA----KELGIEVKVEAQGLSEV-IDLADADLIISTVP 55 (84)
T ss_pred EEEECCCcHhHHHHHHHHHHHHH----HHCCCeEEEEEcccchh-hhcCCccEEEECCc
Confidence 55555444222332334444433 33344344444445443 44578999998764
No 321
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=23.83 E-value=3.6e+02 Score=26.56 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=19.3
Q ss_pred HHHHHHHHHhccCCcEEEEEecC
Q 023870 75 DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 75 ~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
.++|-.....++|||+|+.++=+
T Consensus 351 r~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 351 RELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred HHHHHHHHhhccCCcEEEEEeee
Confidence 57788889999999999988744
No 322
>TIGR02175 PorC_KorC 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes the gamma subunit. In Pyrococcus furious, enzymes active on pyruvate and 2-ketoisovalerate share a common gamma subunit.
Probab=23.69 E-value=1.4e+02 Score=24.91 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=22.8
Q ss_pred CCCceeEEEeccccccCChHHHHHH--HHHhccCCcEEEEEe
Q 023870 56 ESFSIDTVLSISSSHELPGDQLLEE--ISRVLKPGGTILIYK 95 (276)
Q Consensus 56 ~~~sfD~V~s~~~l~~~~~~~~l~e--i~rvLKPgG~l~i~~ 95 (276)
+....|++++... ..+.. ..+.|+|||.+++..
T Consensus 63 ~~~~~D~lva~~~-------~~~~~~~~~~~l~~gg~ii~d~ 97 (177)
T TIGR02175 63 QIYEPDYVVVLDP-------TLLKTVNVTAGLKEDGILIVNT 97 (177)
T ss_pred ccCCCCEEEEcCH-------HHhCccchhhCcCCCeEEEEEC
Confidence 4567888888652 23332 567799999998764
No 323
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=23.65 E-value=1e+02 Score=29.50 Aligned_cols=64 Identities=8% Similarity=-0.001 Sum_probs=41.5
Q ss_pred HHHHHHHhhhhCCC-CeEEEeccCCCCC-CCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEE
Q 023870 28 IRDLGDEAVEQCDP-QIITQASSLSQLP-VESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIY 94 (276)
Q Consensus 28 m~~~A~~~~~~~~~-~v~~~~~d~~~lp-~~~~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~ 94 (276)
..+.+++++...+. ++.+..+|+..+- .....||+|..-- + .. ...++..+.+.+++||.|+++
T Consensus 81 Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f-Gs-~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 81 AVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F-GT-PAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred HHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-CC-cHHHHHHHHHhcccCCEEEEE
Confidence 33444444433333 3677778876542 2235799998742 2 11 257999999999999999988
No 324
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=22.93 E-value=58 Score=19.79 Aligned_cols=13 Identities=38% Similarity=0.902 Sum_probs=9.2
Q ss_pred CCCccccCCCCCC
Q 023870 242 LGDAFRCGTCPYK 254 (276)
Q Consensus 242 lGDAFRC~~CPy~ 254 (276)
-+|+-||--|=|+
T Consensus 14 ~~~~irC~~CG~R 26 (32)
T PF03604_consen 14 PGDPIRCPECGHR 26 (32)
T ss_dssp TSSTSSBSSSS-S
T ss_pred CCCcEECCcCCCe
Confidence 3788888888764
No 325
>PRK10867 signal recognition particle protein; Provisional
Probab=22.66 E-value=3.6e+02 Score=26.40 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=28.4
Q ss_pred CCceeEEEecccc-ccCCh--HHHHHHHHHhccCCcEEEEEecC
Q 023870 57 SFSIDTVLSISSS-HELPG--DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 57 ~~sfD~V~s~~~l-~~~~~--~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
...||+|+.=.+- ++... -.-+..+.++++|...+++.+..
T Consensus 181 ~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~ 224 (433)
T PRK10867 181 ENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAM 224 (433)
T ss_pred hcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecc
Confidence 3569999875443 33333 44567788888999998888754
No 326
>PF12353 eIF3g: Eukaryotic translation initiation factor 3 subunit G ; InterPro: IPR024675 At least eleven different protein factors are involved in initiation of protein synthesis in eukaryotes. Binding of initiator tRNA and mRNA to the 40S subunit requires the presence of the translation initiation factors eIF-2 and eIF-3, with eIF-3 being particularly important for 80S ribosome dissociation and mRNA binding []. eIF-3 is the most complex translation inititation factor, consisting of about 13 putative subunits and having a molecular weight of between 550 - 700 kDa in mammalian cells. Subunits are designated eIF-3a - eIF-3m; the large number of subunits means that the interactions between the individual subunits that make up the eIF-3 complex are complex and varied. Subunit G is required for eIF3 integrity. This entry represents a domain of approximately 130 amino acids in length found at the N terminus of eukaryotic translation initiation factor 3 subunit G. This domain is commonly found in association with the RNA recognition domain PF00076 from PFAM.
Probab=22.09 E-value=51 Score=26.63 Aligned_cols=23 Identities=35% Similarity=0.923 Sum_probs=18.7
Q ss_pred CCCCCCCCCCCCCccccCCCCCCCC
Q 023870 232 NPQSACGSCGLGDAFRCGTCPYKGL 256 (276)
Q Consensus 232 ~~~ssCg~C~lGDAFRC~~CPy~G~ 256 (276)
...=.|-.|- ||-|- +.|||.++
T Consensus 104 ~~~v~CR~Ck-GdH~T-~~CPyKd~ 126 (128)
T PF12353_consen 104 KSKVKCRICK-GDHWT-SKCPYKDT 126 (128)
T ss_pred CceEEeCCCC-CCccc-ccCCcccc
Confidence 4467899996 99996 78999864
No 327
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=21.31 E-value=4e+02 Score=24.22 Aligned_cols=66 Identities=9% Similarity=-0.004 Sum_probs=42.6
Q ss_pred CCCCCcEEEEccCCCCcHHHHH------------HHHHHHHHHhhhhCCCCeEEEeccCCCCCCCCC-ceeEEEeccccc
Q 023870 4 GKMQSAVLALSEDKILPVSAVL------------NAIRDLGDEAVEQCDPQIITQASSLSQLPVESF-SIDTVLSISSSH 70 (276)
Q Consensus 4 ~~~g~~vL~v~~~~~~~~~~v~------------~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~~~-sfD~V~s~~~l~ 70 (276)
+..+++|+=|+.|.+.-=..+. ..|.+..+++.. ...+++.+.+|+...+++.. .++.|+++..++
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~-~~~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY~ 106 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA-PYDNLTVINGDALKFDFPSLAQPYKVVANLPYN 106 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc-cccceEEEeCchhcCcchhhcCCCEEEEcCCCc
Confidence 4558899999999863211111 333333333322 23558889999999998765 688899987654
No 328
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=21.29 E-value=2.8e+02 Score=24.69 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=24.1
Q ss_pred CCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEE
Q 023870 57 SFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIY 94 (276)
Q Consensus 57 ~~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~ 94 (276)
...||+|+-... ....+..+.+.|+++|++++.
T Consensus 212 ~~~~d~vid~~g-----~~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 212 GGGFDVVVEATG-----SPSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred CCCCCEEEECCC-----ChHHHHHHHHHhhcCCEEEEE
Confidence 346888876431 235678889999999999874
No 329
>PF12511 DUF3716: Protein of unknown function (DUF3716) ; InterPro: IPR022190 This domain family is found in eukaryotes, and is approximately 60 amino acids in length.
Probab=21.03 E-value=44 Score=23.05 Aligned_cols=17 Identities=29% Similarity=0.667 Sum_probs=11.9
Q ss_pred CCCCCCCCCCCCcc-ccC
Q 023870 233 PQSACGSCGLGDAF-RCG 249 (276)
Q Consensus 233 ~~ssCg~C~lGDAF-RC~ 249 (276)
..++|+||+..+-= ||+
T Consensus 40 ~~gaCaNC~~~~~~~~CS 57 (60)
T PF12511_consen 40 FNGACANCKWNGQGSRCS 57 (60)
T ss_pred cCCcccCceeCCCCCcCc
Confidence 47899999877643 443
No 330
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=20.91 E-value=41 Score=25.68 Aligned_cols=9 Identities=44% Similarity=1.316 Sum_probs=7.0
Q ss_pred cccCCCCCC
Q 023870 246 FRCGTCPYK 254 (276)
Q Consensus 246 FRC~~CPy~ 254 (276)
|||.+||=+
T Consensus 34 ~tCGgCpGr 42 (101)
T COG5561 34 ITCGGCPGR 42 (101)
T ss_pred EEcCCCCcc
Confidence 689999854
No 331
>smart00259 ZnF_A20 A20-like zinc fingers. A20- (an inhibitor of cell death)-like zinc fingers. The zinc finger mediates self-association in A20. These fingers also mediate IL-1-induced NF-kappaB activation.
Probab=20.90 E-value=54 Score=18.99 Aligned_cols=14 Identities=29% Similarity=0.816 Sum_probs=11.8
Q ss_pred ccC--CCCCCCCCCCC
Q 023870 247 RCG--TCPYKGLPPFK 260 (276)
Q Consensus 247 RC~--~CPy~G~PaFk 260 (276)
+|. +|.|-|-|+++
T Consensus 3 ~C~~~~CgF~G~~~t~ 18 (26)
T smart00259 3 KCRRPGCGFFGNPATE 18 (26)
T ss_pred ccccCCCCCcCChhhc
Confidence 477 99999999875
No 332
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=20.48 E-value=3.6e+02 Score=23.32 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=23.5
Q ss_pred CceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEe
Q 023870 58 FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 95 (276)
Q Consensus 58 ~sfD~V~s~~~l~~~~~~~~l~ei~rvLKPgG~l~i~~ 95 (276)
..+|+|+.... ....+.+..+.|+++|+++..-
T Consensus 158 ~~~d~vl~~~~-----~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 158 RGADVVIEASG-----SPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred CCCCEEEEccC-----ChHHHHHHHHHhcCCcEEEEEe
Confidence 35788775421 1346788999999999998654
No 333
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=20.36 E-value=42 Score=31.42 Aligned_cols=58 Identities=16% Similarity=0.224 Sum_probs=43.6
Q ss_pred CCCeEEEeccCCCCCCCC-------CceeEEEeccccccC-----Ch-HHHHHHHHHhccCCcEEEEEecC
Q 023870 40 DPQIITQASSLSQLPVES-------FSIDTVLSISSSHEL-----PG-DQLLEEISRVLKPGGTILIYKKL 97 (276)
Q Consensus 40 ~~~v~~~~~d~~~lp~~~-------~sfD~V~s~~~l~~~-----~~-~~~l~ei~rvLKPgG~l~i~~~~ 97 (276)
...+.|.+.|+..+.-++ .+.++|...++++.+ .. ..+|..+..+++||-.|.|.+..
T Consensus 174 ~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 174 RFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred ceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 355889999998776432 356888777665443 22 78999999999999999999854
No 334
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=20.10 E-value=3.3e+02 Score=22.66 Aligned_cols=79 Identities=18% Similarity=0.120 Sum_probs=42.9
Q ss_pred CCCCCcEEEE-ccCCCCcHHHHHHHHHHHHHHhhhhCCCCeEEEeccCCCCCCC-CCceeEEEeccccccCCh---HHHH
Q 023870 4 GKMQSAVLAL-SEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVE-SFSIDTVLSISSSHELPG---DQLL 78 (276)
Q Consensus 4 ~~~g~~vL~v-~~~~~~~~~~v~~~m~~~A~~~~~~~~~~v~~~~~d~~~lp~~-~~sfD~V~s~~~l~~~~~---~~~l 78 (276)
++.++.+.++ -.|....+..+.+.+.+.... ...++.|+.|...-++-. ....|.+++...+.+-+. --++
T Consensus 64 l~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~----g~~~i~F~IGGa~G~~~~v~~~a~~~lSLS~mTfpH~larlvL~ 139 (157)
T PRK00103 64 LPKGARVIALDERGKQLSSEEFAQELERWRDD----GRSDVAFVIGGADGLSPAVKKRADQSLSLSKLTLPHQLVRVLLA 139 (157)
T ss_pred CCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhc----CCccEEEEEcCccccCHHHHHhcCceEEeccCCCcHHHHHHHHH
Confidence 3445543322 233334466666666553211 113588988876544311 234677777666655554 4577
Q ss_pred HHHHHhcc
Q 023870 79 EEISRVLK 86 (276)
Q Consensus 79 ~ei~rvLK 86 (276)
.++||..+
T Consensus 140 EQlYRa~t 147 (157)
T PRK00103 140 EQLYRAWS 147 (157)
T ss_pred HHHHHHHH
Confidence 88888754
Done!