Query 023871
Match_columns 276
No_of_seqs 178 out of 243
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 07:15:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023871.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023871hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03098 LPA1 LOW PSII ACCUMUL 99.2 5.2E-11 1.1E-15 117.6 7.5 62 215-276 75-136 (453)
2 KOG0553 TPR repeat-containing 99.0 1.1E-09 2.3E-14 103.6 6.7 64 210-276 76-139 (304)
3 PF13414 TPR_11: TPR repeat; P 98.9 1.6E-09 3.5E-14 77.6 5.5 58 215-275 3-61 (69)
4 KOG0550 Molecular chaperone (D 98.8 1.1E-08 2.3E-13 100.8 7.5 82 189-274 215-309 (486)
5 KOG4234 TPR repeat-containing 98.7 3E-08 6.6E-13 90.9 7.1 62 213-274 93-156 (271)
6 PF00595 PDZ: PDZ domain (Also 98.6 7.7E-08 1.7E-12 72.0 6.6 74 88-166 1-81 (81)
7 PF13432 TPR_16: Tetratricopep 98.6 1.4E-07 3.1E-12 67.1 6.1 54 219-275 1-54 (65)
8 KOG0548 Molecular co-chaperone 98.5 3.1E-07 6.7E-12 92.4 8.5 87 186-275 326-415 (539)
9 PRK15359 type III secretion sy 98.5 3.3E-07 7.2E-12 76.3 6.9 83 185-275 32-115 (144)
10 KOG0547 Translocase of outer m 98.4 3.2E-07 6.9E-12 92.2 6.4 59 212-273 112-170 (606)
11 PF12895 Apc3: Anaphase-promot 98.4 5.5E-07 1.2E-11 67.6 5.5 78 190-276 2-82 (84)
12 PF14559 TPR_19: Tetratricopep 98.4 4.7E-07 1E-11 64.4 4.3 49 225-276 1-49 (68)
13 PF13424 TPR_12: Tetratricopep 98.3 3E-06 6.6E-11 62.1 6.4 59 217-275 7-69 (78)
14 PRK02603 photosystem I assembl 98.2 3.8E-06 8.2E-11 70.9 7.5 56 219-274 39-94 (172)
15 TIGR00990 3a0801s09 mitochondr 98.2 3.2E-06 6.8E-11 84.6 8.1 79 189-275 139-217 (615)
16 PF13371 TPR_9: Tetratricopept 98.2 2.3E-06 5E-11 61.7 5.1 51 223-276 3-53 (73)
17 PLN03088 SGT1, suppressor of 98.2 4.1E-06 8.9E-11 79.7 6.8 85 184-276 9-94 (356)
18 KOG0624 dsRNA-activated protei 98.2 2.5E-06 5.3E-11 83.5 5.4 86 184-273 230-328 (504)
19 cd00992 PDZ_signaling PDZ doma 98.1 1.4E-05 3E-10 58.8 8.1 67 92-165 11-81 (82)
20 PRK15363 pathogenicity island 98.1 7E-06 1.5E-10 71.6 7.4 79 189-275 47-126 (157)
21 CHL00033 ycf3 photosystem I as 98.1 1E-05 2.2E-10 67.7 7.8 62 214-275 34-95 (168)
22 TIGR02795 tol_pal_ybgF tol-pal 98.1 1.5E-05 3.3E-10 60.5 7.5 88 188-276 13-100 (119)
23 PLN03088 SGT1, suppressor of 98.1 1.3E-05 2.7E-10 76.4 8.4 56 217-275 4-59 (356)
24 PRK11189 lipoprotein NlpI; Pro 98.1 9.7E-06 2.1E-10 74.6 7.3 80 189-276 76-156 (296)
25 PRK15359 type III secretion sy 98.1 1.3E-05 2.8E-10 66.7 7.0 68 203-275 14-81 (144)
26 cd00189 TPR Tetratricopeptide 98.0 1.1E-05 2.3E-10 55.1 5.5 83 185-275 8-91 (100)
27 cd00136 PDZ PDZ domain, also c 98.0 2.1E-05 4.6E-10 56.6 7.0 66 93-165 1-69 (70)
28 TIGR02552 LcrH_SycD type III s 98.0 2.9E-05 6.3E-10 61.4 7.9 79 189-275 29-108 (135)
29 KOG4648 Uncharacterized conser 98.0 5.6E-06 1.2E-10 81.1 4.6 59 211-272 93-151 (536)
30 TIGR02795 tol_pal_ybgF tol-pal 98.0 1.7E-05 3.6E-10 60.3 6.2 61 216-276 3-63 (119)
31 TIGR00990 3a0801s09 mitochondr 97.9 3.1E-05 6.7E-10 77.5 8.8 57 215-275 127-183 (615)
32 TIGR02552 LcrH_SycD type III s 97.9 1.9E-05 4.1E-10 62.5 5.7 68 205-275 6-74 (135)
33 TIGR03302 OM_YfiO outer membra 97.9 6.1E-05 1.3E-09 65.3 8.4 57 219-275 170-226 (235)
34 smart00228 PDZ Domain present 97.9 0.0001 2.2E-09 54.0 8.3 74 88-168 4-84 (85)
35 PF13180 PDZ_2: PDZ domain; PD 97.9 4.5E-05 9.8E-10 57.5 6.3 67 95-168 3-72 (82)
36 PF00515 TPR_1: Tetratricopept 97.8 3E-05 6.4E-10 49.1 4.3 33 216-248 2-34 (34)
37 KOG0551 Hsp90 co-chaperone CNS 97.8 2.4E-05 5.3E-10 75.9 5.7 60 214-273 80-140 (390)
38 KOG0548 Molecular co-chaperone 97.8 1.6E-05 3.5E-10 80.3 4.3 55 216-273 3-57 (539)
39 TIGR03302 OM_YfiO outer membra 97.8 6.7E-05 1.4E-09 65.0 7.1 73 188-265 44-120 (235)
40 PF09976 TPR_21: Tetratricopep 97.8 0.00018 4E-09 59.2 9.0 58 219-276 52-109 (145)
41 cd00189 TPR Tetratricopeptide 97.8 0.00011 2.5E-09 50.0 6.5 55 218-275 3-57 (100)
42 KOG4626 O-linked N-acetylgluco 97.7 1.6E-05 3.4E-10 82.4 2.9 99 174-275 196-309 (966)
43 PF12895 Apc3: Anaphase-promot 97.7 3.9E-05 8.5E-10 57.5 3.9 48 227-275 1-48 (84)
44 PRK15363 pathogenicity island 97.7 9.7E-05 2.1E-09 64.5 6.8 61 212-275 32-92 (157)
45 PF13431 TPR_17: Tetratricopep 97.7 3.4E-05 7.4E-10 50.5 3.0 34 237-273 1-34 (34)
46 KOG3571 Dishevelled 3 and rela 97.7 0.00015 3.4E-09 73.3 8.7 89 81-171 245-342 (626)
47 PF07719 TPR_2: Tetratricopept 97.7 8.2E-05 1.8E-09 46.4 4.2 33 216-248 2-34 (34)
48 TIGR02521 type_IV_pilW type IV 97.6 0.00046 9.9E-09 56.3 8.8 55 220-275 104-158 (234)
49 PRK02603 photosystem I assembl 97.6 0.00034 7.4E-09 59.0 8.3 75 186-268 44-122 (172)
50 KOG4555 TPR repeat-containing 97.6 0.00018 3.9E-09 62.8 6.6 65 202-276 37-101 (175)
51 PRK12370 invasion protein regu 97.6 0.00013 2.8E-09 72.9 6.5 71 203-276 325-396 (553)
52 PRK11189 lipoprotein NlpI; Pro 97.5 0.00025 5.4E-09 65.4 7.4 58 215-275 64-121 (296)
53 cd00990 PDZ_glycyl_aminopeptid 97.5 0.00031 6.7E-09 51.9 6.5 65 95-168 3-67 (80)
54 KOG0543 FKBP-type peptidyl-pro 97.5 0.00022 4.7E-09 70.2 6.7 62 213-274 206-279 (397)
55 TIGR02521 type_IV_pilW type IV 97.5 0.0013 2.7E-08 53.7 10.2 56 218-276 138-193 (234)
56 PF13525 YfiO: Outer membrane 97.5 0.00025 5.5E-09 62.0 6.5 61 215-275 5-65 (203)
57 PRK10866 outer membrane biogen 97.5 0.00031 6.6E-09 63.9 7.3 87 177-266 29-120 (243)
58 PRK10370 formate-dependent nit 97.5 0.00038 8.2E-09 61.2 7.5 71 203-276 94-168 (198)
59 CHL00033 ycf3 photosystem I as 97.5 0.00071 1.5E-08 56.6 8.7 83 185-275 43-136 (168)
60 PRK15179 Vi polysaccharide bio 97.4 0.00035 7.7E-09 72.8 8.0 84 184-275 93-177 (694)
61 KOG1125 TPR repeat-containing 97.4 8.7E-05 1.9E-09 75.6 3.1 55 218-275 467-521 (579)
62 PRK09782 bacteriophage N4 rece 97.4 0.00047 1E-08 74.4 8.2 55 219-276 647-701 (987)
63 PRK10803 tol-pal system protei 97.4 0.00054 1.2E-08 63.5 7.4 86 188-276 154-241 (263)
64 PRK09782 bacteriophage N4 rece 97.4 0.00043 9.3E-09 74.7 7.6 79 190-276 589-667 (987)
65 cd00988 PDZ_CTP_protease PDZ d 97.4 0.0011 2.5E-08 49.2 7.7 66 95-168 4-72 (85)
66 KOG0550 Molecular chaperone (D 97.3 0.00015 3.3E-09 72.1 3.5 66 205-273 39-104 (486)
67 KOG4642 Chaperone-dependent E3 97.3 0.00016 3.4E-09 67.9 3.4 56 215-273 10-65 (284)
68 KOG4626 O-linked N-acetylgluco 97.3 0.00037 8.1E-09 72.5 6.4 82 194-275 298-411 (966)
69 PRK10866 outer membrane biogen 97.2 0.0018 3.9E-08 59.0 9.0 63 214-276 31-93 (243)
70 PF12688 TPR_5: Tetratrico pep 97.2 0.0012 2.7E-08 54.7 7.0 87 184-275 8-98 (120)
71 PF12688 TPR_5: Tetratrico pep 97.2 0.0033 7.2E-08 52.1 9.6 60 217-276 3-62 (120)
72 PRK12370 invasion protein regu 97.2 0.00098 2.1E-08 66.6 7.4 73 203-275 359-464 (553)
73 cd00987 PDZ_serine_protease PD 97.2 0.0012 2.7E-08 49.2 6.0 58 104-168 23-82 (90)
74 PF13428 TPR_14: Tetratricopep 97.1 0.0012 2.6E-08 44.6 5.0 41 217-260 3-43 (44)
75 PRK15179 Vi polysaccharide bio 97.1 0.0014 3.1E-08 68.4 7.7 81 189-276 132-212 (694)
76 PF13512 TPR_18: Tetratricopep 97.1 0.0018 3.8E-08 55.8 7.0 86 177-267 7-99 (142)
77 TIGR02917 PEP_TPR_lipo putativ 97.0 0.0014 2.9E-08 64.2 6.8 85 184-276 29-114 (899)
78 PRK10803 tol-pal system protei 97.0 0.0016 3.4E-08 60.5 6.6 60 216-275 143-203 (263)
79 KOG0545 Aryl-hydrocarbon recep 97.0 0.0013 2.8E-08 62.4 6.0 56 219-274 182-252 (329)
80 PRK11447 cellulose synthase su 97.0 0.0035 7.5E-08 68.0 10.1 55 219-276 465-519 (1157)
81 PRK15174 Vi polysaccharide exp 97.0 0.0026 5.6E-08 65.3 8.4 55 218-275 287-341 (656)
82 PRK10370 formate-dependent nit 96.9 0.0025 5.4E-08 56.1 6.8 71 203-276 60-134 (198)
83 cd00991 PDZ_archaeal_metallopr 96.9 0.0035 7.5E-08 47.2 6.6 58 104-168 9-68 (79)
84 PF13432 TPR_16: Tetratricopep 96.9 0.0021 4.6E-08 45.4 5.1 60 185-249 5-65 (65)
85 PRK15174 Vi polysaccharide exp 96.9 0.0023 5E-08 65.6 7.3 82 186-275 85-167 (656)
86 cd05804 StaR_like StaR_like; a 96.9 0.0026 5.7E-08 57.9 6.8 85 187-276 124-210 (355)
87 COG3063 PilF Tfp pilus assembl 96.9 0.0021 4.7E-08 59.8 6.2 72 203-275 90-162 (250)
88 KOG1173 Anaphase-promoting com 96.9 0.002 4.4E-08 66.1 6.3 55 218-275 458-512 (611)
89 KOG2376 Signal recognition par 96.8 0.0025 5.4E-08 65.7 6.8 57 220-276 115-199 (652)
90 PRK11788 tetratricopeptide rep 96.8 0.0062 1.3E-07 56.0 8.4 56 220-275 146-203 (389)
91 PF09295 ChAPs: ChAPs (Chs5p-A 96.8 0.005 1.1E-07 60.6 8.1 55 219-276 238-292 (395)
92 TIGR02917 PEP_TPR_lipo putativ 96.8 0.0045 9.7E-08 60.6 7.6 55 218-275 739-793 (899)
93 PF13181 TPR_8: Tetratricopept 96.7 0.002 4.3E-08 40.3 3.5 33 216-248 2-34 (34)
94 PF13414 TPR_11: TPR repeat; P 96.7 0.0017 3.6E-08 46.3 3.4 54 188-246 14-69 (69)
95 PRK11447 cellulose synthase su 96.7 0.0037 8.1E-08 67.7 7.3 78 187-275 583-660 (1157)
96 cd00989 PDZ_metalloprotease PD 96.6 0.0086 1.9E-07 43.8 6.8 56 106-168 13-69 (79)
97 PF13429 TPR_15: Tetratricopep 96.6 0.0086 1.9E-07 53.7 8.0 88 185-275 154-271 (280)
98 PF14938 SNAP: Soluble NSF att 96.6 0.0089 1.9E-07 54.8 8.0 58 219-276 118-179 (282)
99 PF13512 TPR_18: Tetratricopep 96.6 0.0068 1.5E-07 52.3 6.7 62 215-276 10-71 (142)
100 PRK11788 tetratricopeptide rep 96.5 0.0072 1.6E-07 55.6 6.9 87 185-276 43-131 (389)
101 PRK15331 chaperone protein Sic 96.5 0.005 1.1E-07 54.4 5.4 77 189-276 49-129 (165)
102 smart00028 TPR Tetratricopepti 96.4 0.0069 1.5E-07 34.2 3.9 32 217-248 3-34 (34)
103 cd05804 StaR_like StaR_like; a 96.4 0.0071 1.5E-07 55.1 5.9 54 220-276 119-172 (355)
104 KOG4814 Uncharacterized conser 96.4 0.0085 1.8E-07 62.7 7.0 73 203-275 337-417 (872)
105 KOG0553 TPR repeat-containing 96.3 0.0085 1.8E-07 57.4 6.5 69 203-274 102-171 (304)
106 PRK10049 pgaA outer membrane p 96.3 0.013 2.8E-07 61.0 8.2 54 219-275 120-173 (765)
107 PF13371 TPR_9: Tetratricopept 96.3 0.012 2.5E-07 42.2 5.5 58 189-251 7-65 (73)
108 KOG4234 TPR repeat-containing 96.3 0.013 2.8E-07 54.5 7.0 93 178-275 92-191 (271)
109 PRK15331 chaperone protein Sic 96.2 0.016 3.5E-07 51.2 7.0 58 215-275 37-94 (165)
110 KOG0543 FKBP-type peptidyl-pro 96.2 0.039 8.4E-07 54.7 10.3 54 219-275 261-314 (397)
111 PRK11186 carboxy-terminal prot 96.1 0.014 3.1E-07 61.0 7.4 72 95-168 246-320 (667)
112 PF13525 YfiO: Outer membrane 96.1 0.02 4.3E-07 50.2 7.1 75 189-266 17-93 (203)
113 COG0793 Prc Periplasmic protea 96.1 0.011 2.3E-07 58.3 5.9 92 83-179 87-182 (406)
114 PF14559 TPR_19: Tetratricopep 96.1 0.015 3.3E-07 41.0 5.1 61 190-255 4-65 (68)
115 cd00986 PDZ_LON_protease PDZ d 96.0 0.023 4.9E-07 42.2 6.1 55 106-168 9-65 (79)
116 TIGR00225 prc C-terminal pepti 95.9 0.023 4.9E-07 53.7 7.0 68 95-168 53-121 (334)
117 KOG0376 Serine-threonine phosp 95.9 0.005 1.1E-07 62.0 2.5 57 215-274 4-60 (476)
118 KOG0624 dsRNA-activated protei 95.8 0.016 3.6E-07 57.3 5.6 54 219-275 42-95 (504)
119 PF13429 TPR_15: Tetratricopep 95.8 0.02 4.2E-07 51.5 5.7 61 215-275 146-237 (280)
120 KOG1155 Anaphase-promoting com 95.7 0.034 7.5E-07 56.5 7.7 73 203-275 351-455 (559)
121 PRK10049 pgaA outer membrane p 95.7 0.038 8.3E-07 57.6 8.3 79 189-275 371-450 (765)
122 TIGR02037 degP_htrA_DO peripla 95.6 0.022 4.7E-07 55.5 5.9 67 95-168 236-315 (428)
123 KOG2076 RNA polymerase III tra 95.5 0.043 9.3E-07 58.9 8.0 83 184-276 421-507 (895)
124 KOG0609 Calcium/calmodulin-dep 95.5 0.022 4.8E-07 58.2 5.6 73 92-168 133-205 (542)
125 KOG1128 Uncharacterized conser 95.5 0.025 5.5E-07 59.6 6.1 78 190-275 498-576 (777)
126 PRK10747 putative protoheme IX 95.5 0.039 8.5E-07 53.0 7.0 51 222-275 160-210 (398)
127 TIGR02037 degP_htrA_DO peripla 95.5 0.025 5.4E-07 55.1 5.7 57 105-168 362-420 (428)
128 KOG1126 DNA-binding cell divis 95.5 0.021 4.7E-07 59.3 5.4 52 222-276 530-581 (638)
129 PF00515 TPR_1: Tetratricopept 95.5 0.012 2.7E-07 36.9 2.4 25 252-276 1-25 (34)
130 PF13176 TPR_7: Tetratricopept 95.5 0.0085 1.8E-07 39.1 1.6 28 218-245 2-29 (36)
131 COG4105 ComL DNA uptake lipopr 95.4 0.047 1E-06 51.3 6.8 61 215-275 34-94 (254)
132 PF10579 Rapsyn_N: Rapsyn N-te 95.3 0.067 1.5E-06 42.4 6.5 58 216-273 7-64 (80)
133 KOG1125 TPR repeat-containing 95.3 0.028 6.1E-07 57.8 5.6 78 195-275 408-487 (579)
134 PF04733 Coatomer_E: Coatomer 95.3 0.067 1.4E-06 50.2 7.6 75 189-272 179-255 (290)
135 COG4783 Putative Zn-dependent 95.3 0.079 1.7E-06 53.7 8.5 51 222-275 347-397 (484)
136 KOG3785 Uncharacterized conser 95.2 0.024 5.3E-07 56.4 4.7 47 224-274 66-113 (557)
137 PLN00049 carboxyl-terminal pro 95.2 0.062 1.3E-06 52.2 7.4 69 95-168 87-161 (389)
138 PF03704 BTAD: Bacterial trans 95.1 0.13 2.7E-06 41.9 7.9 63 210-275 56-119 (146)
139 PRK10139 serine endoprotease; 95.1 0.044 9.6E-07 54.6 6.1 58 105-169 390-447 (455)
140 TIGR02038 protease_degS peripl 95.1 0.037 8.1E-07 53.0 5.4 57 105-168 278-336 (351)
141 KOG3550 Receptor targeting pro 95.1 0.059 1.3E-06 48.0 6.1 76 87-166 92-172 (207)
142 PF14938 SNAP: Soluble NSF att 95.0 0.18 3.9E-06 46.3 9.4 92 183-275 120-219 (282)
143 COG5010 TadD Flp pilus assembl 95.0 0.089 1.9E-06 49.5 7.4 85 184-275 107-191 (257)
144 PRK10139 serine endoprotease; 94.9 0.053 1.1E-06 54.0 6.2 58 104-168 289-348 (455)
145 PLN02789 farnesyltranstransfer 94.9 0.081 1.8E-06 50.4 7.1 54 218-274 109-164 (320)
146 KOG4340 Uncharacterized conser 94.8 0.025 5.4E-07 55.3 3.5 54 218-274 147-200 (459)
147 COG3063 PilF Tfp pilus assembl 94.7 0.092 2E-06 49.2 6.8 69 203-274 56-125 (250)
148 TIGR00540 hemY_coli hemY prote 94.7 0.096 2.1E-06 50.3 7.1 52 222-276 160-211 (409)
149 KOG1126 DNA-binding cell divis 94.7 0.034 7.4E-07 57.8 4.2 68 205-275 478-546 (638)
150 KOG3553 Tax interaction protei 94.7 0.023 5.1E-07 47.3 2.4 31 104-135 58-88 (124)
151 PRK10898 serine endoprotease; 94.6 0.074 1.6E-06 51.1 6.1 57 105-168 279-337 (353)
152 KOG1892 Actin filament-binding 94.5 0.057 1.2E-06 58.9 5.5 51 84-135 932-990 (1629)
153 KOG2076 RNA polymerase III tra 94.5 0.067 1.5E-06 57.5 6.0 64 207-273 131-194 (895)
154 KOG3209 WW domain-containing p 94.5 0.14 3.1E-06 54.4 8.1 88 79-170 892-984 (984)
155 PLN02789 farnesyltranstransfer 94.4 0.08 1.7E-06 50.4 5.8 59 204-265 130-189 (320)
156 COG5010 TadD Flp pilus assembl 94.4 0.1 2.2E-06 49.1 6.4 81 185-274 74-156 (257)
157 PRK10942 serine endoprotease; 94.4 0.083 1.8E-06 52.9 6.2 58 104-168 310-369 (473)
158 COG2956 Predicted N-acetylgluc 94.4 0.13 2.8E-06 50.6 7.1 71 203-275 194-272 (389)
159 PF14853 Fis1_TPR_C: Fis1 C-te 94.4 0.22 4.7E-06 36.1 6.7 37 218-254 4-40 (53)
160 PRK14574 hmsH outer membrane p 94.4 0.1 2.2E-06 55.9 7.0 52 222-276 109-160 (822)
161 PRK10942 serine endoprotease; 94.4 0.086 1.9E-06 52.8 6.1 59 105-170 408-466 (473)
162 KOG1840 Kinesin light chain [C 94.3 0.14 3.1E-06 52.1 7.7 56 220-275 246-306 (508)
163 PF09976 TPR_21: Tetratricopep 94.3 0.34 7.3E-06 39.8 8.6 65 212-276 8-72 (145)
164 PRK10747 putative protoheme IX 94.2 0.56 1.2E-05 45.1 11.2 88 184-275 270-384 (398)
165 PF07719 TPR_2: Tetratricopept 94.2 0.043 9.4E-07 33.8 2.4 24 253-276 2-25 (34)
166 PF13174 TPR_6: Tetratricopept 94.2 0.067 1.4E-06 32.7 3.2 30 218-247 3-32 (33)
167 PF06552 TOM20_plant: Plant sp 94.0 0.094 2E-06 47.3 5.0 49 216-267 26-84 (186)
168 PF13424 TPR_12: Tetratricopep 93.9 0.17 3.8E-06 36.7 5.5 61 184-244 12-75 (78)
169 KOG1308 Hsp70-interacting prot 93.8 0.04 8.6E-07 54.1 2.5 52 221-275 120-171 (377)
170 KOG1840 Kinesin light chain [C 93.8 0.33 7.2E-06 49.6 9.1 73 203-275 304-390 (508)
171 PRK10153 DNA-binding transcrip 93.7 0.13 2.9E-06 52.1 6.0 52 221-276 426-477 (517)
172 PRK10779 zinc metallopeptidase 93.7 0.24 5.2E-06 49.0 7.6 57 106-169 222-279 (449)
173 TIGR01713 typeII_sec_gspC gene 93.6 0.15 3.3E-06 47.4 5.9 67 95-168 179-249 (259)
174 KOG3580 Tight junction protein 93.6 0.06 1.3E-06 56.4 3.5 43 93-136 417-459 (1027)
175 COG3975 Predicted protease wit 93.5 0.12 2.6E-06 53.1 5.3 53 95-151 453-505 (558)
176 KOG1129 TPR repeat-containing 93.5 0.093 2E-06 51.9 4.4 80 196-275 338-418 (478)
177 COG4785 NlpI Lipoprotein NlpI, 93.5 0.16 3.4E-06 48.0 5.6 97 176-275 57-156 (297)
178 PRK11906 transcriptional regul 93.3 0.14 3.1E-06 51.6 5.6 54 220-276 343-396 (458)
179 KOG3532 Predicted protein kina 93.3 0.19 4E-06 53.4 6.4 71 91-168 384-454 (1051)
180 KOG4162 Predicted calmodulin-b 93.2 0.16 3.4E-06 54.1 5.8 61 215-275 684-777 (799)
181 PF13174 TPR_6: Tetratricopept 93.0 0.056 1.2E-06 33.0 1.4 23 254-276 2-24 (33)
182 PF13181 TPR_8: Tetratricopept 92.8 0.098 2.1E-06 32.5 2.3 24 253-276 2-25 (34)
183 PF12862 Apc5: Anaphase-promot 92.7 0.15 3.3E-06 39.7 3.8 52 225-276 8-65 (94)
184 TIGR00054 RIP metalloprotease 92.6 0.25 5.4E-06 48.6 5.9 58 105-169 203-261 (420)
185 KOG0547 Translocase of outer m 92.5 0.13 2.9E-06 52.7 4.0 67 205-274 383-450 (606)
186 KOG2003 TPR repeat-containing 92.4 0.07 1.5E-06 54.7 1.9 54 219-275 494-547 (840)
187 PF10300 DUF3808: Protein of u 92.3 0.82 1.8E-05 45.6 9.3 87 185-275 275-370 (468)
188 PF11817 Foie-gras_1: Foie gra 92.1 1.1 2.3E-05 40.8 9.0 72 203-274 166-240 (247)
189 KOG3060 Uncharacterized conser 92.0 0.52 1.1E-05 45.0 6.9 55 222-276 93-178 (289)
190 COG4783 Putative Zn-dependent 91.7 0.7 1.5E-05 47.1 7.9 55 217-274 376-430 (484)
191 COG1729 Uncharacterized protei 91.6 0.43 9.3E-06 45.1 6.1 57 219-275 182-238 (262)
192 PRK14574 hmsH outer membrane p 91.5 0.41 8.9E-06 51.3 6.5 46 227-275 80-125 (822)
193 KOG3785 Uncharacterized conser 91.4 0.43 9.3E-06 47.9 6.0 47 226-275 162-208 (557)
194 KOG1128 Uncharacterized conser 91.3 0.29 6.2E-06 52.0 4.9 69 204-275 472-542 (777)
195 COG1729 Uncharacterized protei 91.2 0.33 7.2E-06 45.8 4.8 58 218-275 144-201 (262)
196 PF10602 RPN7: 26S proteasome 91.1 2.4 5.2E-05 37.1 9.8 58 218-275 39-96 (177)
197 PF13374 TPR_10: Tetratricopep 91.0 0.44 9.4E-06 30.2 3.9 27 218-244 5-31 (42)
198 PF10300 DUF3808: Protein of u 91.0 0.4 8.6E-06 47.9 5.4 57 219-275 271-328 (468)
199 PRK10153 DNA-binding transcrip 90.8 0.42 9E-06 48.6 5.5 68 203-272 441-508 (517)
200 KOG3209 WW domain-containing p 90.7 0.6 1.3E-05 49.9 6.6 81 83-169 647-736 (984)
201 PF13176 TPR_7: Tetratricopept 90.7 0.2 4.3E-06 32.5 2.1 23 254-276 1-23 (36)
202 KOG2003 TPR repeat-containing 90.7 0.15 3.3E-06 52.3 2.3 70 193-270 253-327 (840)
203 TIGR00054 RIP metalloprotease 90.3 0.28 6E-06 48.3 3.6 56 105-167 128-183 (420)
204 KOG3580 Tight junction protein 90.1 0.41 8.8E-06 50.4 4.7 76 92-171 197-281 (1027)
205 PRK10779 zinc metallopeptidase 90.0 0.36 7.8E-06 47.7 4.2 56 106-168 127-184 (449)
206 PF12569 NARP1: NMDA receptor- 90.0 0.89 1.9E-05 46.4 7.0 52 222-276 201-252 (517)
207 KOG2002 TPR-containing nuclear 89.9 0.16 3.6E-06 55.1 1.8 54 220-276 651-704 (1018)
208 KOG3542 cAMP-regulated guanine 89.9 0.2 4.4E-06 53.3 2.4 48 87-135 537-591 (1283)
209 KOG3605 Beta amyloid precursor 89.8 0.16 3.6E-06 53.4 1.7 58 79-136 639-704 (829)
210 KOG1155 Anaphase-promoting com 89.2 1.1 2.4E-05 46.0 6.9 82 189-273 298-385 (559)
211 KOG3129 26S proteasome regulat 89.0 0.49 1.1E-05 43.9 3.9 32 106-138 140-171 (231)
212 KOG1173 Anaphase-promoting com 88.8 0.74 1.6E-05 47.9 5.4 92 184-275 370-478 (611)
213 PRK10941 hypothetical protein; 88.7 0.86 1.9E-05 42.8 5.4 49 225-276 191-239 (269)
214 cd02681 MIT_calpain7_1 MIT: do 88.5 0.95 2.1E-05 35.1 4.7 32 212-243 3-34 (76)
215 KOG3606 Cell polarity protein 88.5 1.2 2.7E-05 43.0 6.3 69 91-163 169-248 (358)
216 COG4235 Cytochrome c biogenesi 88.3 1.3 2.9E-05 42.4 6.4 43 230-275 208-250 (287)
217 smart00745 MIT Microtubule Int 87.7 3.4 7.3E-05 30.8 7.1 25 218-242 11-35 (77)
218 PF04212 MIT: MIT (microtubule 87.5 1.8 3.8E-05 31.9 5.5 27 217-243 7-33 (69)
219 PF12968 DUF3856: Domain of Un 87.3 2.3 5.1E-05 36.8 6.7 74 202-275 29-123 (144)
220 smart00028 TPR Tetratricopepti 87.3 0.47 1E-05 26.3 1.8 23 253-275 2-24 (34)
221 KOG1130 Predicted G-alpha GTPa 87.1 1.4 3.1E-05 45.0 6.1 54 220-273 22-76 (639)
222 COG4105 ComL DNA uptake lipopr 87.0 2.2 4.7E-05 40.3 7.0 74 184-265 41-121 (254)
223 PF13374 TPR_10: Tetratricopep 86.9 0.61 1.3E-05 29.5 2.4 24 252-275 2-25 (42)
224 cd02682 MIT_AAA_Arch MIT: doma 86.9 1.2 2.6E-05 34.7 4.4 37 213-249 4-47 (75)
225 KOG0276 Vesicle coat complex C 86.8 1.9 4E-05 45.7 7.0 158 118-276 522-745 (794)
226 PF14685 Tricorn_PDZ: Tricorn 86.5 2.8 6.1E-05 33.4 6.4 69 95-170 3-81 (88)
227 KOG1156 N-terminal acetyltrans 86.4 1.1 2.4E-05 47.2 5.2 50 218-270 78-127 (700)
228 PRK14720 transcript cleavage f 86.3 3.1 6.8E-05 45.5 8.6 66 205-274 106-171 (906)
229 PRK04841 transcriptional regul 86.2 3.4 7.5E-05 42.9 8.6 56 220-275 536-596 (903)
230 PF15015 NYD-SP12_N: Spermatog 86.2 1.8 3.8E-05 44.3 6.2 72 203-274 164-250 (569)
231 COG0265 DegQ Trypsin-like seri 86.1 1.1 2.3E-05 42.5 4.5 58 106-171 271-330 (347)
232 KOG3938 RGS-GAIP interacting p 86.0 0.94 2E-05 43.6 4.0 76 89-168 133-210 (334)
233 COG0457 NrfG FOG: TPR repeat [ 85.9 8.5 0.00018 28.9 8.5 29 220-248 100-128 (291)
234 TIGR00540 hemY_coli hemY prote 85.6 2.1 4.6E-05 41.2 6.3 51 220-274 340-392 (409)
235 cd02683 MIT_1 MIT: domain cont 85.6 4 8.6E-05 31.5 6.7 33 217-249 8-47 (77)
236 PF07720 TPR_3: Tetratricopept 85.5 1.8 3.8E-05 29.0 4.1 33 216-248 2-36 (36)
237 PF12968 DUF3856: Domain of Un 85.3 7.2 0.00016 33.9 8.7 58 218-275 12-78 (144)
238 PF04733 Coatomer_E: Coatomer 85.3 2 4.3E-05 40.4 5.9 45 229-276 181-225 (290)
239 KOG1130 Predicted G-alpha GTPa 85.2 1.3 2.7E-05 45.4 4.7 87 189-275 240-338 (639)
240 COG3118 Thioredoxin domain-con 85.2 2 4.3E-05 41.6 5.8 58 215-275 134-191 (304)
241 PLN03098 LPA1 LOW PSII ACCUMUL 84.9 1 2.2E-05 45.7 3.9 53 187-244 85-141 (453)
242 PF08631 SPO22: Meiosis protei 84.6 6.7 0.00015 36.1 8.9 62 213-274 33-106 (278)
243 COG0457 NrfG FOG: TPR repeat [ 84.1 4.8 0.0001 30.2 6.4 53 220-274 172-224 (291)
244 cd02656 MIT MIT: domain contai 83.6 6.3 0.00014 29.4 6.9 27 217-243 8-34 (75)
245 PF14561 TPR_20: Tetratricopep 83.6 1.8 3.9E-05 34.1 4.1 31 218-248 25-55 (90)
246 PF03745 DUF309: Domain of unk 83.5 8 0.00017 28.7 7.3 58 218-275 2-62 (62)
247 TIGR02860 spore_IV_B stage IV 83.5 1.9 4E-05 43.1 5.0 67 94-169 97-171 (402)
248 KOG3081 Vesicle coat complex C 83.2 7.8 0.00017 37.4 8.8 90 183-276 127-231 (299)
249 TIGR03279 cyano_FeS_chp putati 83.1 1.5 3.2E-05 44.2 4.2 35 109-147 2-36 (433)
250 KOG1127 TPR repeat-containing 83.1 2.4 5.2E-05 47.0 6.0 81 189-276 574-654 (1238)
251 KOG4555 TPR repeat-containing 82.8 7.7 0.00017 34.4 8.0 82 189-275 55-138 (175)
252 PLN03081 pentatricopeptide (PP 82.7 5.2 0.00011 41.1 8.1 45 225-275 370-414 (697)
253 KOG4151 Myosin assembly protei 82.6 1.1 2.4E-05 47.8 3.2 51 217-267 55-106 (748)
254 PF02064 MAS20: MAS20 protein 82.5 5.9 0.00013 33.4 6.9 35 217-251 65-99 (121)
255 cd02678 MIT_VPS4 MIT: domain c 82.4 7.3 0.00016 29.4 6.9 29 215-243 6-34 (75)
256 cd02684 MIT_2 MIT: domain cont 82.0 3.6 7.9E-05 31.5 5.1 29 215-243 6-34 (75)
257 KOG3552 FERM domain protein FR 81.8 3.2 6.9E-05 45.8 6.3 74 87-168 59-132 (1298)
258 PLN03081 pentatricopeptide (PP 81.4 2.4 5.1E-05 43.5 5.1 48 225-275 504-551 (697)
259 PF13431 TPR_17: Tetratricopep 81.3 1.4 2.9E-05 28.6 2.2 32 205-236 2-34 (34)
260 KOG0551 Hsp90 co-chaperone CNS 81.2 3.2 6.8E-05 41.2 5.6 52 220-274 124-175 (390)
261 cd02680 MIT_calpain7_2 MIT: do 81.0 2.4 5.2E-05 33.0 3.8 29 216-244 7-35 (75)
262 COG3629 DnrI DNA-binding trans 80.2 44 0.00095 32.0 12.7 133 140-275 49-210 (280)
263 PF06552 TOM20_plant: Plant sp 80.1 2.5 5.5E-05 38.3 4.2 48 203-250 56-115 (186)
264 KOG3651 Protein kinase C, alph 80.1 6.9 0.00015 38.5 7.4 77 95-175 18-96 (429)
265 KOG0546 HSP90 co-chaperone CPR 79.6 0.64 1.4E-05 45.9 0.3 143 80-242 94-249 (372)
266 KOG0376 Serine-threonine phosp 79.4 0.85 1.8E-05 46.4 1.1 71 203-276 25-96 (476)
267 PF12569 NARP1: NMDA receptor- 78.7 8.8 0.00019 39.3 8.1 68 188-262 15-82 (517)
268 COG2976 Uncharacterized protei 78.7 7 0.00015 36.0 6.6 57 220-276 94-150 (207)
269 PLN03077 Protein ECB2; Provisi 78.5 4.4 9.6E-05 42.6 6.1 53 218-274 557-611 (857)
270 KOG2796 Uncharacterized conser 78.5 1.7 3.6E-05 42.3 2.7 51 223-276 260-310 (366)
271 PLN03218 maturation of RBCL 1; 77.9 13 0.00028 41.3 9.6 47 225-275 694-742 (1060)
272 KOG2376 Signal recognition par 77.3 4.7 0.0001 42.4 5.7 59 218-276 15-103 (652)
273 COG2912 Uncharacterized conser 76.8 12 0.00025 35.7 7.8 87 177-275 146-238 (269)
274 PF07721 TPR_4: Tetratricopept 76.0 3.1 6.8E-05 25.2 2.5 24 253-276 2-25 (26)
275 PF13428 TPR_14: Tetratricopep 75.4 2.8 6.2E-05 27.9 2.4 24 253-276 2-25 (44)
276 COG4700 Uncharacterized protei 75.3 12 0.00026 34.9 7.2 54 219-275 93-147 (251)
277 PRK14720 transcript cleavage f 74.8 5.8 0.00013 43.5 5.8 87 183-276 37-140 (906)
278 KOG1308 Hsp70-interacting prot 74.6 0.85 1.8E-05 45.1 -0.4 79 189-275 126-205 (377)
279 PF11874 DUF3394: Domain of un 74.0 7.1 0.00015 35.2 5.3 40 95-136 113-152 (183)
280 PF04495 GRASP55_65: GRASP55/6 73.3 10 0.00023 32.3 5.9 69 93-168 26-101 (138)
281 KOG2002 TPR-containing nuclear 72.6 5.8 0.00013 43.7 5.1 43 221-266 348-390 (1018)
282 PRK04841 transcriptional regul 72.5 8.8 0.00019 40.0 6.3 55 221-275 458-514 (903)
283 cd02677 MIT_SNX15 MIT: domain 71.8 6.1 0.00013 30.4 3.8 26 217-242 8-33 (75)
284 COG3071 HemY Uncharacterized e 71.0 16 0.00034 36.8 7.4 54 219-275 157-210 (400)
285 PLN03218 maturation of RBCL 1; 69.6 16 0.00034 40.7 7.7 50 222-275 726-777 (1060)
286 PLN03077 Protein ECB2; Provisi 69.5 27 0.00059 36.8 9.2 45 225-276 534-578 (857)
287 KOG2053 Mitochondrial inherita 69.2 21 0.00045 39.3 8.3 55 219-276 47-101 (932)
288 KOG1129 TPR repeat-containing 69.0 2.6 5.7E-05 42.0 1.5 49 224-275 333-381 (478)
289 PF04184 ST7: ST7 protein; In 68.1 12 0.00027 38.7 6.1 55 220-275 264-318 (539)
290 KOG1127 TPR repeat-containing 67.3 10 0.00022 42.3 5.6 91 185-275 1008-1098(1238)
291 PF14863 Alkyl_sulf_dimr: Alky 66.9 9.7 0.00021 32.7 4.4 51 216-269 71-121 (141)
292 KOG1310 WD40 repeat protein [G 66.9 7.3 0.00016 41.0 4.2 70 203-275 395-468 (758)
293 PF12862 Apc5: Anaphase-promot 65.9 17 0.00036 28.2 5.2 59 190-248 11-74 (94)
294 PLN00207 polyribonucleotide nu 65.8 29 0.00063 38.2 8.7 17 124-140 108-124 (891)
295 KOG4642 Chaperone-dependent E3 63.8 12 0.00025 35.9 4.7 69 204-275 32-101 (284)
296 COG3031 PulC Type II secretory 63.5 9.3 0.0002 36.4 3.9 46 119-169 221-266 (275)
297 TIGR02710 CRISPR-associated pr 63.2 23 0.0005 35.3 6.8 57 220-276 135-195 (380)
298 TIGR00985 3a0801s04tom mitocho 63.1 25 0.00054 30.8 6.3 34 217-250 92-126 (148)
299 KOG3549 Syntrophins (type gamm 62.6 18 0.00039 36.4 5.8 81 80-164 49-135 (505)
300 KOG1156 N-terminal acetyltrans 62.2 14 0.00031 39.3 5.4 54 219-275 45-98 (700)
301 cd02679 MIT_spastin MIT: domai 60.8 18 0.00039 28.4 4.5 30 213-242 6-35 (79)
302 KOG1174 Anaphase-promoting com 60.4 14 0.00031 38.0 4.8 35 214-248 299-333 (564)
303 PF01436 NHL: NHL repeat; Int 58.9 10 0.00022 23.5 2.3 19 91-111 1-19 (28)
304 smart00386 HAT HAT (Half-A-TPR 57.3 18 0.00038 21.2 3.2 22 229-250 1-22 (33)
305 PF14346 DUF4398: Domain of un 57.1 44 0.00094 26.3 6.3 60 213-276 43-102 (103)
306 COG3480 SdrC Predicted secrete 56.6 28 0.00061 34.3 6.0 59 106-172 131-191 (342)
307 COG2956 Predicted N-acetylgluc 56.4 53 0.0012 32.8 7.9 32 217-248 142-174 (389)
308 PRK09681 putative type II secr 56.4 30 0.00065 33.1 6.1 67 97-168 196-265 (276)
309 KOG3824 Huntingtin interacting 56.4 22 0.00048 35.5 5.3 32 218-249 119-150 (472)
310 COG2976 Uncharacterized protei 56.3 82 0.0018 29.2 8.6 120 129-249 29-193 (207)
311 KOG3081 Vesicle coat complex C 56.3 29 0.00063 33.6 5.9 49 222-273 214-262 (299)
312 cd03701 IF2_IF5B_II IF2_IF5B_I 56.3 10 0.00022 30.1 2.5 37 95-138 2-40 (95)
313 PF02259 FAT: FAT domain; Int 55.8 92 0.002 28.2 9.0 44 219-265 256-305 (352)
314 KOG1585 Protein required for f 55.0 96 0.0021 30.1 9.1 56 219-274 114-172 (308)
315 PF14853 Fis1_TPR_C: Fis1 C-te 54.4 12 0.00026 27.1 2.4 23 253-275 2-24 (53)
316 PF08631 SPO22: Meiosis protei 54.3 13 0.00029 34.1 3.3 24 219-242 250-273 (278)
317 PF13041 PPR_2: PPR repeat fam 53.9 40 0.00088 22.6 4.9 27 224-250 12-40 (50)
318 PF12854 PPR_1: PPR repeat 53.0 20 0.00044 23.0 3.1 29 244-276 3-31 (34)
319 PRK04778 septation ring format 52.9 31 0.00068 35.4 6.0 42 216-257 520-563 (569)
320 PF04010 DUF357: Protein of un 52.4 14 0.00031 28.5 2.7 50 192-241 6-61 (75)
321 TIGR00756 PPR pentatricopeptid 52.1 29 0.00063 20.4 3.6 24 224-247 9-34 (35)
322 PF14561 TPR_20: Tetratricopep 51.1 32 0.00069 27.0 4.6 38 234-275 7-45 (90)
323 PF09670 Cas_Cas02710: CRISPR- 50.8 53 0.0012 32.1 7.0 54 220-275 136-192 (379)
324 PF09295 ChAPs: ChAPs (Chs5p-A 49.9 78 0.0017 31.5 8.0 70 203-275 183-257 (395)
325 COG3071 HemY Uncharacterized e 49.5 1E+02 0.0022 31.2 8.6 50 220-273 333-382 (400)
326 KOG4340 Uncharacterized conser 49.0 19 0.0004 35.9 3.5 48 224-274 19-66 (459)
327 COG4785 NlpI Lipoprotein NlpI, 48.7 31 0.00067 33.0 4.7 55 218-275 68-122 (297)
328 KOG3551 Syntrophins (type beta 48.6 23 0.0005 36.0 4.1 65 87-155 86-156 (506)
329 KOG1586 Protein required for f 48.6 70 0.0015 30.8 7.1 78 190-267 127-210 (288)
330 KOG0545 Aryl-hydrocarbon recep 48.3 86 0.0019 30.5 7.7 128 144-274 129-286 (329)
331 PRK03987 translation initiatio 48.3 2.4E+02 0.0052 26.5 10.9 147 85-264 10-170 (262)
332 COG4976 Predicted methyltransf 47.7 20 0.00043 34.4 3.3 46 203-248 16-62 (287)
333 smart00652 eIF1a eukaryotic tr 46.9 54 0.0012 25.7 5.2 52 85-145 5-58 (83)
334 KOG0739 AAA+-type ATPase [Post 46.6 50 0.0011 33.1 5.9 27 217-243 12-38 (439)
335 COG0361 InfA Translation initi 45.5 47 0.001 26.1 4.6 57 85-150 7-67 (75)
336 PF09986 DUF2225: Uncharacteri 45.4 64 0.0014 29.2 6.2 55 220-274 130-187 (214)
337 PRK04012 translation initiatio 45.2 64 0.0014 26.4 5.6 54 84-146 20-75 (100)
338 PF03704 BTAD: Bacterial trans 45.1 1.5E+02 0.0032 23.8 7.8 60 216-275 7-85 (146)
339 KOG4056 Translocase of outer m 43.2 97 0.0021 27.2 6.6 34 217-250 83-116 (143)
340 KOG1174 Anaphase-promoting com 43.2 52 0.0011 34.0 5.7 53 218-273 337-389 (564)
341 PRK10941 hypothetical protein; 42.6 53 0.0011 31.0 5.4 70 177-251 173-251 (269)
342 KOG3364 Membrane protein invol 42.5 50 0.0011 29.1 4.8 43 229-273 49-92 (149)
343 PRK03760 hypothetical protein; 42.2 42 0.00091 27.9 4.1 37 92-132 78-114 (117)
344 PF10516 SHNi-TPR: SHNi-TPR; 42.2 28 0.0006 23.7 2.5 25 221-245 7-31 (38)
345 KOG2997 F-box protein FBX9 [Ge 41.9 42 0.0009 33.3 4.7 40 210-249 14-53 (366)
346 cd05793 S1_IF1A S1_IF1A: Trans 41.3 68 0.0015 24.8 4.9 37 100-145 17-53 (77)
347 cd04456 S1_IF1A_like S1_IF1A_l 41.2 43 0.00094 26.0 3.8 46 90-144 5-52 (78)
348 PRK14533 groES co-chaperonin G 40.2 47 0.001 26.6 4.0 27 107-134 38-64 (91)
349 PF05168 HEPN: HEPN domain; I 38.9 1.7E+02 0.0037 22.1 7.0 35 209-243 2-36 (118)
350 KOG4563 Cell cycle-regulated h 38.6 66 0.0014 32.4 5.5 60 213-272 39-103 (400)
351 PF02259 FAT: FAT domain; Int 38.5 1.6E+02 0.0035 26.6 7.7 65 211-275 142-207 (352)
352 PF06160 EzrA: Septation ring 38.2 52 0.0011 33.9 4.9 35 217-251 517-553 (560)
353 KOG1464 COP9 signalosome, subu 38.2 60 0.0013 32.1 5.1 43 230-272 42-85 (440)
354 PF09986 DUF2225: Uncharacteri 37.9 87 0.0019 28.3 5.8 28 218-245 168-195 (214)
355 PF02643 DUF192: Uncharacteriz 37.1 26 0.00055 28.4 2.1 27 103-131 79-105 (108)
356 PF09613 HrpB1_HrpK: Bacterial 36.8 1E+02 0.0022 27.4 5.8 47 219-268 48-94 (160)
357 PF10602 RPN7: 26S proteasome 36.2 2.5E+02 0.0055 24.4 8.3 85 189-274 48-135 (177)
358 KOG3364 Membrane protein invol 36.1 44 0.00095 29.5 3.5 33 218-250 74-106 (149)
359 cd03702 IF2_mtIF2_II This fami 35.6 49 0.0011 26.5 3.5 44 95-145 2-49 (95)
360 KOG1585 Protein required for f 35.5 75 0.0016 30.8 5.2 24 253-276 91-115 (308)
361 KOG1738 Membrane-associated gu 35.2 32 0.00069 36.5 2.9 43 93-135 210-255 (638)
362 PF01176 eIF-1a: Translation i 34.8 55 0.0012 24.2 3.4 45 86-132 4-50 (65)
363 KOG2610 Uncharacterized conser 34.7 58 0.0013 33.0 4.5 46 226-274 186-231 (491)
364 PTZ00414 10 kDa heat shock pro 34.7 60 0.0013 26.7 3.8 24 108-132 48-71 (100)
365 KOG3060 Uncharacterized conser 34.6 1.4E+02 0.003 29.0 6.8 35 215-249 154-188 (289)
366 TIGR03362 VI_chp_7 type VI sec 34.3 1.6E+02 0.0035 28.2 7.3 58 218-275 216-273 (301)
367 PF07079 DUF1347: Protein of u 33.7 1.4E+02 0.003 31.2 7.0 54 218-275 465-518 (549)
368 TIGR03504 FimV_Cterm FimV C-te 33.7 26 0.00056 24.5 1.4 22 255-276 2-23 (44)
369 PF05843 Suf: Suppressor of fo 33.7 41 0.00088 31.1 3.1 55 218-275 38-93 (280)
370 cd03703 aeIF5B_II aeIF5B_II: T 33.3 68 0.0015 26.7 4.0 36 96-138 3-40 (110)
371 KOG1320 Serine protease [Postt 33.1 1.1E+02 0.0024 31.5 6.2 59 106-171 399-458 (473)
372 PF07219 HemY_N: HemY protein 32.8 2.6E+02 0.0055 22.3 8.5 33 216-248 60-92 (108)
373 PF06957 COPI_C: Coatomer (COP 32.7 70 0.0015 32.4 4.7 26 219-244 208-233 (422)
374 PRK10316 hypothetical protein; 32.7 1.6E+02 0.0035 27.3 6.7 60 213-275 125-192 (209)
375 PRK00364 groES co-chaperonin G 32.4 69 0.0015 25.6 3.8 11 123-133 58-68 (95)
376 KOG4162 Predicted calmodulin-b 32.3 1.7E+02 0.0036 32.1 7.6 38 232-272 461-498 (799)
377 PF13812 PPR_3: Pentatricopept 30.7 92 0.002 18.5 3.4 19 224-242 10-28 (34)
378 COG4235 Cytochrome c biogenesi 30.3 1E+02 0.0022 29.8 5.1 31 219-249 231-261 (287)
379 COG1430 Uncharacterized conser 30.2 58 0.0013 27.7 3.2 40 93-134 82-121 (126)
380 KOG0495 HAT repeat protein [RN 29.7 1.1E+02 0.0024 33.4 5.8 47 219-268 821-867 (913)
381 cd00320 cpn10 Chaperonin 10 Kd 28.8 98 0.0021 24.6 4.1 29 106-134 36-68 (93)
382 TIGR03504 FimV_Cterm FimV C-te 28.6 1.7E+02 0.0037 20.4 4.8 29 220-249 4-32 (44)
383 KOG4648 Uncharacterized conser 28.3 1.4E+02 0.0031 30.5 5.9 33 220-252 170-202 (536)
384 PF04053 Coatomer_WDAD: Coatom 27.8 4.5E+02 0.0097 26.6 9.5 148 116-275 196-370 (443)
385 PRK11906 transcriptional regul 27.8 75 0.0016 32.6 4.0 45 205-249 361-406 (458)
386 KOG1421 Predicted signaling-as 27.6 79 0.0017 34.5 4.3 32 103-136 301-332 (955)
387 PF10752 DUF2533: Protein of u 27.5 1.3E+02 0.0029 24.2 4.6 37 203-239 16-54 (84)
388 PF01959 DHQS: 3-dehydroquinat 27.5 2.3E+02 0.005 28.3 7.2 52 83-136 278-338 (354)
389 KOG4507 Uncharacterized conser 27.3 89 0.0019 33.8 4.5 42 219-260 680-721 (886)
390 TIGR00739 yajC preprotein tran 27.2 46 0.00099 26.2 1.9 41 123-168 37-77 (84)
391 PF10255 Paf67: RNA polymerase 27.1 44 0.00095 33.6 2.2 46 227-275 134-187 (404)
392 KOG0546 HSP90 co-chaperone CPR 26.2 1E+02 0.0022 30.9 4.5 34 218-251 312-345 (372)
393 KOG2063 Vacuolar assembly/sort 26.2 2.7E+02 0.0059 30.9 8.1 107 130-242 254-373 (877)
394 PF01333 Apocytochr_F_C: Apocy 26.1 83 0.0018 26.8 3.4 37 86-135 23-59 (118)
395 PF00244 14-3-3: 14-3-3 protei 25.5 1.6E+02 0.0035 26.9 5.5 44 216-259 2-50 (236)
396 COG4014 Uncharacterized protei 24.9 55 0.0012 26.9 2.0 56 124-189 9-66 (97)
397 PRK06531 yajC preprotein trans 24.7 49 0.0011 27.7 1.8 41 123-168 36-77 (113)
398 PRK13184 pknD serine/threonine 23.8 1.9E+02 0.0041 32.2 6.4 70 203-276 496-576 (932)
399 PF04212 MIT: MIT (microtubule 23.6 1.6E+02 0.0034 21.4 4.1 22 229-250 26-47 (69)
400 PF01535 PPR: PPR repeat; Int 23.4 56 0.0012 19.0 1.4 21 255-275 3-23 (31)
401 TIGR00523 eIF-1A eukaryotic/ar 22.6 2.2E+02 0.0048 23.2 5.1 46 85-132 19-66 (99)
402 PF10938 YfdX: YfdX protein; 22.3 1.8E+02 0.004 25.0 4.9 60 215-275 75-140 (155)
403 PF08626 TRAPPC9-Trs120: Trans 22.1 86 0.0019 35.3 3.5 51 218-268 245-298 (1185)
404 KOG0495 HAT repeat protein [RN 21.9 2.6E+02 0.0057 30.7 6.8 59 184-248 658-718 (913)
405 KOG2709 Uncharacterized conser 21.9 1.5E+02 0.0032 30.8 4.8 41 203-243 10-50 (560)
406 TIGR03095 rusti_cyanin rusticy 21.3 1.2E+02 0.0026 26.0 3.6 43 91-133 6-65 (148)
407 TIGR02604 Piru_Ver_Nterm putat 20.8 1.8E+02 0.0039 27.7 5.0 20 91-112 13-32 (367)
408 PF02699 YajC: Preprotein tran 20.7 33 0.00072 26.7 0.0 17 123-139 36-52 (82)
409 PF11846 DUF3366: Domain of un 20.6 1.8E+02 0.0039 25.0 4.5 25 222-246 151-175 (193)
410 COG4941 Predicted RNA polymera 20.6 1.8E+02 0.0039 29.4 5.0 39 220-258 370-408 (415)
411 KOG1586 Protein required for f 20.3 2.4E+02 0.0052 27.3 5.5 9 267-275 88-96 (288)
412 PF08969 USP8_dimer: USP8 dime 20.1 2.4E+02 0.0052 22.6 4.9 35 211-245 34-68 (115)
No 1
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=99.16 E-value=5.2e-11 Score=117.62 Aligned_cols=62 Identities=29% Similarity=0.508 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
.+.+++.|++|+++|+|++|++.|++||+++|++.+.+.+|||+||||+++|++++|+++|+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~Lr 136 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLR 136 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56788999999999999999999999999999998877899999999999999999999874
No 2
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=1.1e-09 Score=103.63 Aligned_cols=64 Identities=30% Similarity=0.331 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 210 EQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 210 elkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
+-+.++|+.+.+||.+.+.++|++||.+|++||+++|++. +.|+|||.+|++||+++.||+..|
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA---VyycNRAAAy~~Lg~~~~AVkDce 139 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA---VYYCNRAAAYSKLGEYEDAVKDCE 139 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc---hHHHHHHHHHHHhcchHHHHHHHH
Confidence 6777888889999999999999999999999999999995 789999999999999999998754
No 3
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.94 E-value=1.6e-09 Score=77.64 Aligned_cols=58 Identities=28% Similarity=0.357 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcC-ChhHHHhhh
Q 023871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN-QVPLLLALI 275 (276)
Q Consensus 215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLg-q~~eAI~aL 275 (276)
++.|+..|+.++..|+|++|+..|++||+++|++. .+|+|++.||.++| ++++|+..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~---~~~~~~g~~~~~~~~~~~~A~~~~ 61 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA---EAYYNLGLAYMKLGKDYEEAIEDF 61 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH---HHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhCccHHHHHHHH
Confidence 45688999999999999999999999999999996 59999999999999 799999876
No 4
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.1e-08 Score=100.80 Aligned_cols=82 Identities=16% Similarity=0.233 Sum_probs=70.5
Q ss_pred cCCCcchhHHHHHH------------HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH-HHHH
Q 023871 189 NSGVISNRVREIQM------------QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES-SVAS 255 (276)
Q Consensus 189 ~~G~i~~al~Eiq~------------~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~-a~A~ 255 (276)
-.+|++++.+|+|+ ..|...|+|++.+ .+||.+|+.|+|..|.++|+.||.++|++-+. +.+|
T Consensus 215 y~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k----~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY 290 (486)
T KOG0550|consen 215 YNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKK----ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLY 290 (486)
T ss_pred cccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHH----hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHH
Confidence 57999999999999 4466666666665 99999999999999999999999999998655 7788
Q ss_pred HHHhHHHHhcCChhHHHhh
Q 023871 256 YNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 256 YN~AcCyaKLgq~~eAI~a 274 (276)
+|+|.++.+||+..+||..
T Consensus 291 ~nra~v~~rLgrl~eaisd 309 (486)
T KOG0550|consen 291 GNRALVNIRLGRLREAISD 309 (486)
T ss_pred HHhHhhhcccCCchhhhhh
Confidence 8888888888888888764
No 5
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=3e-08 Score=90.87 Aligned_cols=62 Identities=29% Similarity=0.414 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh--hHHHHHHHHhHHHHhcCChhHHHhh
Q 023871 213 ERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE--ESSVASYNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 213 kqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~--e~a~A~YN~AcCyaKLgq~~eAI~a 274 (276)
.++..++.+||.||+.|+|++|..+|..||++||.-. +.+.+|.|+|.|..||++|+.||+.
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~d 156 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIED 156 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHH
Confidence 4455677999999999999999999999999999864 3489999999999999999999964
No 6
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=98.65 E-value=7.7e-08 Score=72.05 Aligned_cols=74 Identities=23% Similarity=0.618 Sum_probs=59.2
Q ss_pred EEEecC----cceeEEeeeCCC---CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCc
Q 023871 88 EVEIEQ----PYGLKFAKGRDG---GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP 160 (276)
Q Consensus 88 ~V~l~K----PLGl~f~e~~dG---gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gp 160 (276)
+|+|.| |+|+.+..+.+. ++||.+|.|+|.|+++| |++||+|+.+... .+ .--..-+++..|+...++
T Consensus 1 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~---~v-~~~~~~~~~~~l~~~~~~ 75 (81)
T PF00595_consen 1 QVTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAG-LKVGDRILEINGQ---SV-RGMSHDEVVQLLKSASNP 75 (81)
T ss_dssp EEEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHT-SSTTEEEEEETTE---ES-TTSBHHHHHHHHHHSTSE
T ss_pred CEEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcc-cchhhhhheeCCE---eC-CCCCHHHHHHHHHCCCCc
Confidence 355555 999999998774 99999999999999999 9999999998763 11 112344678889988889
Q ss_pred eEEEEe
Q 023871 161 LLMKMQ 166 (276)
Q Consensus 161 v~L~l~ 166 (276)
|.|+++
T Consensus 76 v~L~V~ 81 (81)
T PF00595_consen 76 VTLTVQ 81 (81)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999875
No 7
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.58 E-value=1.4e-07 Score=67.09 Aligned_cols=54 Identities=24% Similarity=0.278 Sum_probs=49.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+..|..+++.|+|++|+..|+++|...|++. .+|+..+.||..+|++++|+..+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~---~a~~~lg~~~~~~g~~~~A~~~~ 54 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNP---EAWYLLGRILYQQGRYDEALAYY 54 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHH---HHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHcCCHHHHHHHH
Confidence 3678999999999999999999999999986 68999999999999999999865
No 8
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=3.1e-07 Score=92.37 Aligned_cols=87 Identities=20% Similarity=0.334 Sum_probs=64.0
Q ss_pred HhhcCCCcchhHHHHHH--HHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHH
Q 023871 186 AERNSGVISNRVREIQM--QNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY 262 (276)
Q Consensus 186 ~~r~~G~i~~al~Eiq~--~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCy 262 (276)
.|+-.+++.+++++.-+ ..+.+..-+... +++....||.+|+.|+|.+|+..|++||..+|++. .+|+|+|.||
T Consensus 326 te~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da---~lYsNRAac~ 402 (539)
T KOG0548|consen 326 TEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDA---RLYSNRAACY 402 (539)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchh---HHHHHHHHHH
Confidence 34444555555555444 112222222222 34456889999999999999999999999999995 7999999999
Q ss_pred HhcCChhHHHhhh
Q 023871 263 SKLNQVPLLLALI 275 (276)
Q Consensus 263 aKLgq~~eAI~aL 275 (276)
.+|+++..|+...
T Consensus 403 ~kL~~~~~aL~Da 415 (539)
T KOG0548|consen 403 LKLGEYPEALKDA 415 (539)
T ss_pred HHHhhHHHHHHHH
Confidence 9999999999753
No 9
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.49 E-value=3.3e-07 Score=76.25 Aligned_cols=83 Identities=12% Similarity=0.083 Sum_probs=67.8
Q ss_pred HHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871 185 RAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS 263 (276)
Q Consensus 185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya 263 (276)
.+-...|++++++..++. .-.+... .+.++..|..+...|+|++|+..|++|+.++|++. .+|+|++.||.
T Consensus 32 ~~~~~~g~~~~A~~~~~~-----al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~---~a~~~lg~~l~ 103 (144)
T PRK15359 32 YASWQEGDYSRAVIDFSW-----LVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP---EPVYQTGVCLK 103 (144)
T ss_pred HHHHHcCCHHHHHHHHHH-----HHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHH
Confidence 334477888888655554 4444333 34567999999999999999999999999999996 68999999999
Q ss_pred hcCChhHHHhhh
Q 023871 264 KLNQVPLLLALI 275 (276)
Q Consensus 264 KLgq~~eAI~aL 275 (276)
++|++++|+.++
T Consensus 104 ~~g~~~eAi~~~ 115 (144)
T PRK15359 104 MMGEPGLAREAF 115 (144)
T ss_pred HcCCHHHHHHHH
Confidence 999999999876
No 10
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=3.2e-07 Score=92.16 Aligned_cols=59 Identities=19% Similarity=0.304 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHh
Q 023871 212 KERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLA 273 (276)
Q Consensus 212 kkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~ 273 (276)
.+.+...+++||..|+.|.|++||..|+.||++||+++ .-|.|+|+||..+|+|++-++
T Consensus 112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~ep---iFYsNraAcY~~lgd~~~Vie 170 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEP---IFYSNRAACYESLGDWEKVIE 170 (606)
T ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCc---hhhhhHHHHHHHHhhHHHHHH
Confidence 44455677999999999999999999999999999985 679999999999999998765
No 11
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.40 E-value=5.5e-07 Score=67.57 Aligned_cols=78 Identities=23% Similarity=0.277 Sum_probs=59.2
Q ss_pred CCCcchhHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcC
Q 023871 190 SGVISNRVREIQMQNYMKKKEQKE---RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN 266 (276)
Q Consensus 190 ~G~i~~al~Eiq~~nYkk~Kelkk---qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLg 266 (276)
.|++++++..+. +.-+... ...-++..|..+|+.|+|++|+..+++ +..+|.+. ..+|-.|.||.++|
T Consensus 2 ~~~y~~Ai~~~~-----k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~---~~~~l~a~~~~~l~ 72 (84)
T PF12895_consen 2 QGNYENAIKYYE-----KLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNP---DIHYLLARCLLKLG 72 (84)
T ss_dssp TT-HHHHHHHHH-----HHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHH---HHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHH-----HHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCH---HHHHHHHHHHHHhC
Confidence 567777755544 3333333 233467789999999999999999999 88888774 46778899999999
Q ss_pred ChhHHHhhhC
Q 023871 267 QVPLLLALIE 276 (276)
Q Consensus 267 q~~eAI~aLE 276 (276)
++++||.+|+
T Consensus 73 ~y~eAi~~l~ 82 (84)
T PF12895_consen 73 KYEEAIKALE 82 (84)
T ss_dssp -HHHHHHHHH
T ss_pred CHHHHHHHHh
Confidence 9999999885
No 12
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.37 E-value=4.7e-07 Score=64.44 Aligned_cols=49 Identities=33% Similarity=0.425 Sum_probs=44.2
Q ss_pred HHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 225 LYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 225 Lfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
|++.|+|++|+..|+++++.+|++. .++++.|-||.++|++++|...|+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~l~ 49 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNP---EARLLLAQCYLKQGQYDEAEELLE 49 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSH---HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5789999999999999999999986 589999999999999999998763
No 13
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.25 E-value=3e-06 Score=62.09 Aligned_cols=59 Identities=17% Similarity=0.219 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcC----CCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 217 QDLREGLQLYRTGKYEVAREKFESVLGS----KPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i----~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
-..+-|..++..|+|++|+..|++||++ .++.+..+.+++|++.||..+|++++|++.+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 69 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYY 69 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3457899999999999999999999954 2334456899999999999999999999875
No 14
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.24 E-value=3.8e-06 Score=70.90 Aligned_cols=56 Identities=25% Similarity=0.412 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a 274 (276)
+..|..+...|+|++|+..|++|+.+.|+..+...+++|+|.||.++|++++|+..
T Consensus 39 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 94 (172)
T PRK02603 39 YRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEY 94 (172)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45555555555555555555555555444332234455555555555555555544
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.23 E-value=3.2e-06 Score=84.55 Aligned_cols=79 Identities=18% Similarity=0.093 Sum_probs=64.8
Q ss_pred cCCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCCh
Q 023871 189 NSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV 268 (276)
Q Consensus 189 ~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~ 268 (276)
..|++++++. .|.++-++.....-+.+.|..++++|+|++||..|++||+++|++. .+|++++.||..+|++
T Consensus 139 ~~~~~~~Ai~-----~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~---~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 139 RNKDFNKAIK-----LYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYS---KALNRRANAYDGLGKY 210 (615)
T ss_pred HcCCHHHHHH-----HHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHcCCH
Confidence 5677777744 4555666666555577899999999999999999999999999985 6899999999999999
Q ss_pred hHHHhhh
Q 023871 269 PLLLALI 275 (276)
Q Consensus 269 ~eAI~aL 275 (276)
++|+..+
T Consensus 211 ~eA~~~~ 217 (615)
T TIGR00990 211 ADALLDL 217 (615)
T ss_pred HHHHHHH
Confidence 9998754
No 16
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.22 E-value=2.3e-06 Score=61.66 Aligned_cols=51 Identities=24% Similarity=0.212 Sum_probs=46.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 223 LQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 223 naLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
+.+++.++|++|+..++++|.++|++. .+|+++|.||.++|++++|++.|+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~~a~~~~~~g~~~~A~~~l~ 53 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDP---ELWLQRARCLFQLGRYEEALEDLE 53 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccc---hhhHHHHHHHHHhccHHHHHHHHH
Confidence 456899999999999999999999986 689999999999999999998874
No 17
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.16 E-value=4.1e-06 Score=79.69 Aligned_cols=85 Identities=13% Similarity=0.086 Sum_probs=68.7
Q ss_pred HHHhhcCCCcchhHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHH
Q 023871 184 IRAERNSGVISNRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY 262 (276)
Q Consensus 184 ~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCy 262 (276)
...-...|+++.++ ..|.++-++.... ..++..|..+.+.|+|++|+..|++||.++|++. .+|++++.||
T Consensus 9 a~~a~~~~~~~~Ai-----~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~---~a~~~lg~~~ 80 (356)
T PLN03088 9 AKEAFVDDDFALAV-----DLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLA---KAYLRKGTAC 80 (356)
T ss_pred HHHHHHcCCHHHHH-----HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH---HHHHHHHHHH
Confidence 34444678888884 4466666666553 4467999999999999999999999999999885 5899999999
Q ss_pred HhcCChhHHHhhhC
Q 023871 263 SKLNQVPLLLALIE 276 (276)
Q Consensus 263 aKLgq~~eAI~aLE 276 (276)
.++|++++|+..|+
T Consensus 81 ~~lg~~~eA~~~~~ 94 (356)
T PLN03088 81 MKLEEYQTAKAALE 94 (356)
T ss_pred HHhCCHHHHHHHHH
Confidence 99999999998874
No 18
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.16 E-value=2.5e-06 Score=83.47 Aligned_cols=86 Identities=19% Similarity=0.145 Sum_probs=71.0
Q ss_pred HHHhhcCCCcchhHHHHHH------------HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH
Q 023871 184 IRAERNSGVISNRVREIQM------------QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES 251 (276)
Q Consensus 184 ~~~~r~~G~i~~al~Eiq~------------~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~ 251 (276)
-.-.--.|+++++|++||+ ++||+.|++.|+. +.+.++-..++|-+|++.++++|..+|...++
T Consensus 230 s~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~l----es~e~~ie~~~~t~cle~ge~vlk~ep~~~~i 305 (504)
T KOG0624|consen 230 SQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSL----ESAEQAIEEKHWTECLEAGEKVLKNEPEETMI 305 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHH----HHHHHHHhhhhHHHHHHHHHHHHhcCCcccce
Confidence 3455589999999999999 8899999999999 78888899999999999999999999996544
Q ss_pred -HHHHHHHhHHHHhcCChhHHHh
Q 023871 252 -SVASYNVACCYSKLNQVPLLLA 273 (276)
Q Consensus 252 -a~A~YN~AcCyaKLgq~~eAI~ 273 (276)
...+--+|.||...|++-+||.
T Consensus 306 r~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 306 RYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred eeeeeheeeecccccCCHHHHHH
Confidence 3345556777777777777664
No 19
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.15 E-value=1.4e-05 Score=58.81 Aligned_cols=67 Identities=22% Similarity=0.568 Sum_probs=53.5
Q ss_pred cCcceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecc--cchhHHHHhhcccCceEEEE
Q 023871 92 EQPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA--EYGRTMYTIRQRVGPLLMKM 165 (276)
Q Consensus 92 ~KPLGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~--~~g~~~~air~r~gpv~L~l 165 (276)
.+|+|+.+....+ ++++|..|.+++.|+++| |++||+|+.+-.. +.. ++..++..++...+++.|.+
T Consensus 11 ~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~------~i~~~~~~~~~~~l~~~~~~v~l~v 81 (82)
T cd00992 11 GGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGG-LRVGDRILEVNGV------SVEGLTHEEAVELLKNSGDEVTLTV 81 (82)
T ss_pred CCCcCEEEeCcccCCCCeEEEEECCCChHHhCC-CCCCCEEEEECCE------EcCccCHHHHHHHHHhCCCeEEEEE
Confidence 4679999988754 699999999999999988 9999999997653 444 56677778887666777765
No 20
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.14 E-value=7e-06 Score=71.56 Aligned_cols=79 Identities=14% Similarity=0.079 Sum_probs=64.8
Q ss_pred cCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCC
Q 023871 189 NSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ 267 (276)
Q Consensus 189 ~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq 267 (276)
..|+++.|.+-||- .-.+... .+-|+.-|..+...|+|++||..|.+|+.++||++ .+++|.+-||.++|+
T Consensus 47 ~~G~l~~A~~~f~~-----L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp---~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 47 EVKEFAGAARLFQL-----LTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP---QAPWAAAECYLACDN 118 (157)
T ss_pred HCCCHHHHHHHHHH-----HHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc---hHHHHHHHHHHHcCC
Confidence 67888887554444 2222222 35588999999999999999999999999999997 689999999999999
Q ss_pred hhHHHhhh
Q 023871 268 VPLLLALI 275 (276)
Q Consensus 268 ~~eAI~aL 275 (276)
.+.|.+++
T Consensus 119 ~~~A~~aF 126 (157)
T PRK15363 119 VCYAIKAL 126 (157)
T ss_pred HHHHHHHH
Confidence 99999876
No 21
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.12 E-value=1e-05 Score=67.73 Aligned_cols=62 Identities=16% Similarity=0.212 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 214 qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
++..++..|..++..|+|++|+..|++||.+.|+......+|+|+|+||.++|++++|+..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44556788888888888888888888888887765444568888888888888888888765
No 22
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.09 E-value=1.5e-05 Score=60.50 Aligned_cols=88 Identities=17% Similarity=0.181 Sum_probs=66.0
Q ss_pred hcCCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCC
Q 023871 188 RNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ 267 (276)
Q Consensus 188 r~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq 267 (276)
-..|++++++..++.---+.... .......+..|..+++.|+|++|+..|++++...|+......++++.+-||.++++
T Consensus 13 ~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 91 (119)
T TIGR02795 13 LKAGDYADAIQAFQAFLKKYPKS-TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGD 91 (119)
T ss_pred HHcCCHHHHHHHHHHHHHHCCCc-cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCC
Confidence 35688888876665521110000 00122356789999999999999999999999999976556789999999999999
Q ss_pred hhHHHhhhC
Q 023871 268 VPLLLALIE 276 (276)
Q Consensus 268 ~~eAI~aLE 276 (276)
+++|+..++
T Consensus 92 ~~~A~~~~~ 100 (119)
T TIGR02795 92 KEKAKATLQ 100 (119)
T ss_pred hHHHHHHHH
Confidence 999998763
No 23
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.08 E-value=1.3e-05 Score=76.41 Aligned_cols=56 Identities=11% Similarity=0.083 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+++.+|+.+|..|+|++|+..|++||.++|++. .+|+|+|.||.++|++++|+..+
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~---~a~~~~a~~~~~~g~~~eAl~~~ 59 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA---ELYADRAQANIKLGNFTEAVADA 59 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHH
Confidence 456889999999999999999999999999985 58999999999999999999876
No 24
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.07 E-value=9.7e-06 Score=74.63 Aligned_cols=80 Identities=19% Similarity=0.183 Sum_probs=65.3
Q ss_pred cCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCC
Q 023871 189 NSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ 267 (276)
Q Consensus 189 ~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq 267 (276)
..|+.+.++ ..|+++.++... .+.++..|..+...|+|++|+..|++||+++|++. .+|+|++.||..+|+
T Consensus 76 ~~g~~~~A~-----~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~---~a~~~lg~~l~~~g~ 147 (296)
T PRK11189 76 SLGLRALAR-----NDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---YAYLNRGIALYYGGR 147 (296)
T ss_pred HCCCHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCC
Confidence 445555553 346666666554 35578999999999999999999999999999985 689999999999999
Q ss_pred hhHHHhhhC
Q 023871 268 VPLLLALIE 276 (276)
Q Consensus 268 ~~eAI~aLE 276 (276)
+++|++.++
T Consensus 148 ~~eA~~~~~ 156 (296)
T PRK11189 148 YELAQDDLL 156 (296)
T ss_pred HHHHHHHHH
Confidence 999998763
No 25
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.05 E-value=1.3e-05 Score=66.73 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=59.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 203 QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 203 ~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.-|.++-++... .++..|..+++.|+|++|+..|++++.++|++. .+|+|++.|+.++|++++|+..+
T Consensus 14 ~~~~~al~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~---~a~~~lg~~~~~~g~~~~A~~~y 81 (144)
T PRK15359 14 DILKQLLSVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSW---RAHIALAGTWMMLKEYTTAINFY 81 (144)
T ss_pred HHHHHHHHcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHHhhHHHHHHHH
Confidence 456666666555 366789999999999999999999999999996 68999999999999999999876
No 26
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.05 E-value=1.1e-05 Score=55.11 Aligned_cols=83 Identities=23% Similarity=0.263 Sum_probs=60.5
Q ss_pred HHhhcCCCcchhHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871 185 RAERNSGVISNRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS 263 (276)
Q Consensus 185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya 263 (276)
......|++++++..++. ..++...- .-++..|..++..++|++|+..|++++.+.|.+. .++++++.||.
T Consensus 8 ~~~~~~~~~~~A~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~ 79 (100)
T cd00189 8 NLYYKLGDYDEALEYYEK-----ALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA---KAYYNLGLAYY 79 (100)
T ss_pred HHHHHHhcHHHHHHHHHH-----HHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch---hHHHHHHHHHH
Confidence 334456666666544433 22222221 3467888888999999999999999999888875 57899999999
Q ss_pred hcCChhHHHhhh
Q 023871 264 KLNQVPLLLALI 275 (276)
Q Consensus 264 KLgq~~eAI~aL 275 (276)
.+|+++.|+..+
T Consensus 80 ~~~~~~~a~~~~ 91 (100)
T cd00189 80 KLGKYEEALEAY 91 (100)
T ss_pred HHHhHHHHHHHH
Confidence 999999988765
No 27
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.03 E-value=2.1e-05 Score=56.59 Aligned_cols=66 Identities=21% Similarity=0.474 Sum_probs=51.0
Q ss_pred CcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccc--hhHHHHhhccc-CceEEEE
Q 023871 93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY--GRTMYTIRQRV-GPLLMKM 165 (276)
Q Consensus 93 KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~--g~~~~air~r~-gpv~L~l 165 (276)
.|+|+.+....+++++|..|.+++.|+++| |++||+|+.+-.. +..+. ..+...|+... .++.|++
T Consensus 1 ~~~G~~~~~~~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~------~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 1 GGLGFSIRGGTEGGVVVLSVEPGSPAERAG-LQAGDVILAVNGT------DVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CCccEEEecCCCCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCE------ECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 478999998877799999999999999988 9999999998543 23333 45666777655 5667665
No 28
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.01 E-value=2.9e-05 Score=61.43 Aligned_cols=79 Identities=14% Similarity=0.120 Sum_probs=62.1
Q ss_pred cCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCC
Q 023871 189 NSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ 267 (276)
Q Consensus 189 ~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq 267 (276)
..|++++++..++. .-++... .+.++..|..+++.|+|++|+..|++++.++|++. ..||++|-||.++|+
T Consensus 29 ~~~~~~~A~~~~~~-----~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 29 QQGRYDEALKLFQL-----LAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDP---RPYFHAAECLLALGE 100 (135)
T ss_pred HcccHHHHHHHHHH-----HHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHcCC
Confidence 56777777655543 2222221 24467889999999999999999999999999985 589999999999999
Q ss_pred hhHHHhhh
Q 023871 268 VPLLLALI 275 (276)
Q Consensus 268 ~~eAI~aL 275 (276)
+++|+..+
T Consensus 101 ~~~A~~~~ 108 (135)
T TIGR02552 101 PESALKAL 108 (135)
T ss_pred HHHHHHHH
Confidence 99998765
No 29
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.01 E-value=5.6e-06 Score=81.14 Aligned_cols=59 Identities=20% Similarity=0.265 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHH
Q 023871 211 QKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLL 272 (276)
Q Consensus 211 lkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI 272 (276)
|..+..+.+++||++|++|.|+|||++|.+++++.|.++ +.|-|+|..|.++..+-.|-
T Consensus 93 LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~Np---V~~~NRA~AYlk~K~FA~AE 151 (536)
T KOG4648|consen 93 LLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNP---VYHINRALAYLKQKSFAQAE 151 (536)
T ss_pred HHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCc---cchhhHHHHHHHHHHHHHHH
Confidence 344444566889999999999999999999999999875 78999999999998876553
No 30
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.00 E-value=1.7e-05 Score=60.30 Aligned_cols=61 Identities=18% Similarity=0.212 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
+..+..|..+++.|+|++|+..|++++...|++.....++++++.||.+.|++++|+..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 63 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFL 63 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3467899999999999999999999999999876556789999999999999999998763
No 31
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.95 E-value=3.1e-05 Score=77.54 Aligned_cols=57 Identities=21% Similarity=0.312 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
++..++.|+.+|+.|+|++||..|++||.++|+. ..|+|+|.||.++|++++||+.+
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~----~~~~n~a~~~~~l~~~~~Ai~~~ 183 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP----VYYSNRAACHNALGDWEKVVEDT 183 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch----HHHHHHHHHHHHhCCHHHHHHHH
Confidence 4455688999999999999999999999999974 57999999999999999999875
No 32
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.94 E-value=1.9e-05 Score=62.48 Aligned_cols=68 Identities=18% Similarity=0.228 Sum_probs=57.2
Q ss_pred HhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 205 YMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 205 Ykk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
|++.-++.... +..+..|..+++.|+|++|+..|++++.++|++. .+|++++.||.+++++++|+..+
T Consensus 6 ~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~ 74 (135)
T TIGR02552 6 LKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS---RYWLGLAACCQMLKEYEEAIDAY 74 (135)
T ss_pred HHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555443 3456899999999999999999999999999985 68999999999999999999765
No 33
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.88 E-value=6.1e-05 Score=65.28 Aligned_cols=57 Identities=23% Similarity=0.251 Sum_probs=51.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
...|..+++.|+|++|+..|++++...|+.+....++++++.+|.++|++++|+..+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~ 226 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAA 226 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 366777899999999999999999999998777889999999999999999999865
No 34
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=97.87 E-value=0.0001 Score=53.95 Aligned_cols=74 Identities=24% Similarity=0.532 Sum_probs=51.5
Q ss_pred EEEecC---cceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccch--hHHHHhhcccCc
Q 023871 88 EVEIEQ---PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYG--RTMYTIRQRVGP 160 (276)
Q Consensus 88 ~V~l~K---PLGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g--~~~~air~r~gp 160 (276)
.+++.| ++|+.+..... .+++|..|.+++.|+++| +++||+|+.+-.. +..+.- .....++....+
T Consensus 4 ~~~~~~~~~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~------~v~~~~~~~~~~~~~~~~~~ 76 (85)
T smart00228 4 LVELEKGGGGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAG-LKVGDVILEVNGT------SVEGLTHLEAVDLLKKAGGK 76 (85)
T ss_pred EEEEEECCCcccEEEECCCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE------ECCCCCHHHHHHHHHhCCCe
Confidence 444444 48888887644 689999999999999999 9999999998652 222221 122233333348
Q ss_pred eEEEEeec
Q 023871 161 LLMKMQKR 168 (276)
Q Consensus 161 v~L~l~R~ 168 (276)
+.|.+.|+
T Consensus 77 ~~l~i~r~ 84 (85)
T smart00228 77 VTLTVLRG 84 (85)
T ss_pred EEEEEEeC
Confidence 88888875
No 35
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=97.85 E-value=4.5e-05 Score=57.53 Aligned_cols=67 Identities=21% Similarity=0.384 Sum_probs=50.6
Q ss_pred ceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhh--cccCceEEEEeec
Q 023871 95 YGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR--QRVGPLLMKMQKR 168 (276)
Q Consensus 95 LGl~f~e~~d-Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air--~r~gpv~L~l~R~ 168 (276)
||+.|....+ ++++|.+|.+++.|+++| |++||+|+++-.. .+ .+.......+. ....++.|++.|.
T Consensus 3 lGv~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~---~v---~~~~~~~~~l~~~~~g~~v~l~v~R~ 72 (82)
T PF13180_consen 3 LGVTVQNLSDTGGVVVVSVIPGSPAAKAG-LQPGDIILAINGK---PV---NSSEDLVNILSKGKPGDTVTLTVLRD 72 (82)
T ss_dssp -SEEEEECSCSSSEEEEEESTTSHHHHTT-S-TTEEEEEETTE---ES---SSHHHHHHHHHCSSTTSEEEEEEEET
T ss_pred ECeEEEEccCCCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCE---Ec---CCHHHHHHHHHhCCCCCEEEEEEEEC
Confidence 6889988765 699999999999999999 9999999997653 22 44455555553 3356789999994
No 36
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.84 E-value=3e-05 Score=49.05 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh
Q 023871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTP 248 (276)
Q Consensus 216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~ 248 (276)
+.|+..|..++.+|+|++|+..|++||+++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 468899999999999999999999999999985
No 37
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=2.4e-05 Score=75.89 Aligned_cols=60 Identities=22% Similarity=0.204 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH-HHHHHHHhHHHHhcCChhHHHh
Q 023871 214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES-SVASYNVACCYSKLNQVPLLLA 273 (276)
Q Consensus 214 qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~-a~A~YN~AcCyaKLgq~~eAI~ 273 (276)
+++.-+++||.+|+.++|..|+.+|++.|..+-.++.. +++|.|+|+|+.-+|++..||.
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~ 140 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALN 140 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44455589999999999999999999999665444444 8999999999999999999885
No 38
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=1.6e-05 Score=80.30 Aligned_cols=55 Identities=22% Similarity=0.281 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHh
Q 023871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLA 273 (276)
Q Consensus 216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~ 273 (276)
++.++.||++|..|+|+.||..|+.||.++|.+ .++|.|+..||++++++++|+.
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~n---hvlySnrsaa~a~~~~~~~al~ 57 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTN---HVLYSNRSAAYASLGSYEKALK 57 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCc---cchhcchHHHHHHHhhHHHHHH
Confidence 456789999999999999999999999999997 4899999999999999999986
No 39
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.79 E-value=6.7e-05 Score=65.04 Aligned_cols=73 Identities=14% Similarity=0.216 Sum_probs=47.5
Q ss_pred hcCCCcchhHHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871 188 RNSGVISNRVREIQMQNYMKKKEQKE----RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS 263 (276)
Q Consensus 188 r~~G~i~~al~Eiq~~nYkk~Kelkk----qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya 263 (276)
-..|+++.++..+++ ..+... ..+.++..|..+++.|+|++|+..|++++...|++.+...++|+++-||.
T Consensus 44 ~~~~~~~~A~~~~~~-----~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~ 118 (235)
T TIGR03302 44 LDSGDYTEAIKYFEA-----LESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNY 118 (235)
T ss_pred HHcCCHHHHHHHHHH-----HHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHH
Confidence 366777777554443 222221 11235677777777888888888888888777777665567777777776
Q ss_pred hc
Q 023871 264 KL 265 (276)
Q Consensus 264 KL 265 (276)
++
T Consensus 119 ~~ 120 (235)
T TIGR03302 119 NQ 120 (235)
T ss_pred Hh
Confidence 54
No 40
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.76 E-value=0.00018 Score=59.16 Aligned_cols=58 Identities=26% Similarity=0.378 Sum_probs=52.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
+..|..++..|+|++|+..|+.+++..|++.-...+++++|.|+..+|++++|+..|+
T Consensus 52 l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~ 109 (145)
T PF09976_consen 52 LQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQ 109 (145)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4788889999999999999999998888876667899999999999999999999874
No 41
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.76 E-value=0.00011 Score=49.97 Aligned_cols=55 Identities=33% Similarity=0.404 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
++..|..++..|+|++|+..|++++...|++. .++++++.||..++++++|++.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~ 57 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA---DAYYNLAAAYYKLGKYEEALEDY 57 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999885 68999999999999999999876
No 42
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.75 E-value=1.6e-05 Score=82.42 Aligned_cols=99 Identities=22% Similarity=0.288 Sum_probs=83.4
Q ss_pred cccccchHH--HHHHhh----------cCCCcchhHHHHHH--HHHhhHHHHHHHHHHH-HHHHHHHHHcCCHHHHHHHH
Q 023871 174 QTGELSEKE--IIRAER----------NSGVISNRVREIQM--QNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKF 238 (276)
Q Consensus 174 ~~~~~~e~~--~~~~~r----------~~G~i~~al~Eiq~--~nYkk~Kelkkqae~~-~~eGnaLfk~grYeEAI~~Y 238 (276)
..|+|.|+- -.+|-+ |+|.+=++--||+. ++|.++-+|+.-.-++ ++-||.+-..+.|++|+.+|
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y 275 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCY 275 (966)
T ss_pred hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHH
Confidence 456677664 246655 67777666667776 8899999999887665 69999999999999999999
Q ss_pred HHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 239 ESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 239 e~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.+||.+-|++. ++|.|+||.|..+|++|.||+..
T Consensus 276 ~rAl~lrpn~A---~a~gNla~iYyeqG~ldlAI~~Y 309 (966)
T KOG4626|consen 276 LRALNLRPNHA---VAHGNLACIYYEQGLLDLAIDTY 309 (966)
T ss_pred HHHHhcCCcch---hhccceEEEEeccccHHHHHHHH
Confidence 99999999994 79999999999999999999865
No 43
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.71 E-value=3.9e-05 Score=57.47 Aligned_cols=48 Identities=31% Similarity=0.493 Sum_probs=41.2
Q ss_pred HcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 227 RTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 227 k~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
..|+|++||..|+++++.+|++. ....+|++|-||.++|++++|+..|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~ 48 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGKYEEAIELL 48 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 36899999999999999999643 3468999999999999999999876
No 44
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.71 E-value=9.7e-05 Score=64.50 Aligned_cols=61 Identities=10% Similarity=0.015 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 212 KERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 212 kkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.+..+..+.-|..|+..|+|++|...|+-...++|.+. .-|||.+.|+-.+|+|++||++.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~---~y~~gLG~~~Q~~g~~~~AI~aY 92 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSF---DYWFRLGECCQAQKHWGEAIYAY 92 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHHhhHHHHHHHH
Confidence 34567778999999999999999999999999999996 57999999999999999999875
No 45
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.70 E-value=3.4e-05 Score=50.51 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=31.3
Q ss_pred HHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHh
Q 023871 237 KFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLA 273 (276)
Q Consensus 237 ~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~ 273 (276)
.|++||+++|++. .+|+|.|.+|..+|++++|++
T Consensus 1 ~y~kAie~~P~n~---~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNA---EAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCH---HHHHHHHHHHHHCcCHHhhcC
Confidence 4899999999996 699999999999999999974
No 46
>KOG3571 consensus Dishevelled 3 and related proteins [General function prediction only]
Probab=97.68 E-value=0.00015 Score=73.30 Aligned_cols=89 Identities=22% Similarity=0.416 Sum_probs=69.7
Q ss_pred ccccceEEEEecC---c-ceeEEee----eCCCCeEEEEeCCCCCcccccCcccCCEEEEeecc-cCCcceecccchhHH
Q 023871 81 EEKYEEYEVEIEQ---P-YGLKFAK----GRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV-FGTEIWPAAEYGRTM 151 (276)
Q Consensus 81 ~~~~~~y~V~l~K---P-LGl~f~e----~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~-fGdevw~a~~~g~~~ 151 (276)
-|..+-++|+|.= | |||.+-- ..||||||.+|.+||.-++.|.|.+||.|+.|..+ |+. ..-++-=+++
T Consensus 245 smslnIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFEN--mSNd~AVrvL 322 (626)
T KOG3571|consen 245 SMSLNIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFEN--MSNDQAVRVL 322 (626)
T ss_pred ccceeEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhh--cCchHHHHHH
Confidence 3567888888863 5 9988743 36889999999999999999999999999999875 552 1222223667
Q ss_pred HHhhcccCceEEEEeecCCC
Q 023871 152 YTIRQRVGPLLMKMQKRYGK 171 (276)
Q Consensus 152 ~air~r~gpv~L~l~R~~~~ 171 (276)
.-|-++.||+.|...+++-+
T Consensus 323 REaV~~~gPi~ltvAk~~DP 342 (626)
T KOG3571|consen 323 REAVSRPGPIKLTVAKCWDP 342 (626)
T ss_pred HHHhccCCCeEEEEeeccCC
Confidence 66678999999999998764
No 47
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.66 E-value=8.2e-05 Score=46.41 Aligned_cols=33 Identities=36% Similarity=0.450 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh
Q 023871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTP 248 (276)
Q Consensus 216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~ 248 (276)
+-++..|..+++.|+|++|+..|++||.++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 457889999999999999999999999999985
No 48
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.59 E-value=0.00046 Score=56.30 Aligned_cols=55 Identities=22% Similarity=0.266 Sum_probs=29.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
..|..++..|+|++|+..|++++...+. .....+++|++.||..+|++++|+..+
T Consensus 104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 104 NYGTFLCQQGKYEQAMQQFEQAIEDPLY-PQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4455555555555555555555543221 111245666666777777766666554
No 49
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.59 E-value=0.00034 Score=59.02 Aligned_cols=75 Identities=19% Similarity=0.224 Sum_probs=59.1
Q ss_pred HhhcCCCcchhHHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHH
Q 023871 186 AERNSGVISNRVREIQMQNYMKKKEQKE----RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACC 261 (276)
Q Consensus 186 ~~r~~G~i~~al~Eiq~~nYkk~Kelkk----qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcC 261 (276)
.....|++++++..+++ +.++.. ....++..|..+++.|+|++|+..|++||.+.|++. .++++++.|
T Consensus 44 ~~~~~g~~~~A~~~~~~-----al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~ 115 (172)
T PRK02603 44 SAQADGEYAEALENYEE-----ALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP---SALNNIAVI 115 (172)
T ss_pred HHHHcCCHHHHHHHHHH-----HHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHH
Confidence 34477999998766665 322221 134567999999999999999999999999999985 679999999
Q ss_pred HHhcCCh
Q 023871 262 YSKLNQV 268 (276)
Q Consensus 262 yaKLgq~ 268 (276)
|..+++.
T Consensus 116 ~~~~g~~ 122 (172)
T PRK02603 116 YHKRGEK 122 (172)
T ss_pred HHHcCCh
Confidence 9998884
No 50
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.58 E-value=0.00018 Score=62.83 Aligned_cols=65 Identities=20% Similarity=0.134 Sum_probs=58.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 202 MQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 202 ~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
.+-|+..++|+-+ |..+.+.|+.++||+.|.+||.++|+.. .+|.|+|-.|-.+|+.++|++.|+
T Consensus 37 ~~~~e~S~~LEl~-------~valaE~g~Ld~AlE~F~qal~l~P~ra---SayNNRAQa~RLq~~~e~ALdDLn 101 (175)
T KOG4555|consen 37 TQAIKASRELELK-------AIALAEAGDLDGALELFGQALCLAPERA---SAYNNRAQALRLQGDDEEALDDLN 101 (175)
T ss_pred hHHHHHHHHHHHH-------HHHHHhccchHHHHHHHHHHHHhcccch---HhhccHHHHHHHcCChHHHHHHHH
Confidence 3678888887755 6899999999999999999999999985 789999999999999999999875
No 51
>PRK12370 invasion protein regulator; Provisional
Probab=97.57 E-value=0.00013 Score=72.87 Aligned_cols=71 Identities=17% Similarity=0.061 Sum_probs=55.9
Q ss_pred HHHhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 203 QNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 203 ~nYkk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
..++++-++...- +-+...|..+...|+|++|+..|++||+++|++. .+|++.+.+|..+|++++|+..++
T Consensus 325 ~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~---~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 325 EHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISA---DIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3344555554432 2345678888899999999999999999999996 579999999999999999998764
No 52
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.54 E-value=0.00025 Score=65.37 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+.-+++.|..+...|++++|+..|++||+++|++. .+|+|++..|..+|++++|++++
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~---~a~~~lg~~~~~~g~~~~A~~~~ 121 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMA---DAYNYLGIYLTQAGNFDAAYEAF 121 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHCCCHHHHHHHH
Confidence 34578999999999999999999999999999986 68999999999999999999875
No 53
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.53 E-value=0.00031 Score=51.89 Aligned_cols=65 Identities=18% Similarity=0.322 Sum_probs=47.4
Q ss_pred ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeec
Q 023871 95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR 168 (276)
Q Consensus 95 LGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~ 168 (276)
+|+.|.. .+|++.|..|.+++.|+++| |++||+|+.+-.. +..++...+...+ ....+.|.+.|.
T Consensus 3 ~G~~~~~-~~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~------~v~~~~~~l~~~~-~~~~v~l~v~r~ 67 (80)
T cd00990 3 LGLTLDK-EEGLGKVTFVRDDSPADKAG-LVAGDELVAVNGW------RVDALQDRLKEYQ-AGDPVELTVFRD 67 (80)
T ss_pred ccEEEEc-cCCcEEEEEECCCChHHHhC-CCCCCEEEEECCE------EhHHHHHHHHhcC-CCCEEEEEEEEC
Confidence 6888865 46789999999999999999 9999999998642 3333333343332 234678888773
No 54
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00022 Score=70.21 Aligned_cols=62 Identities=21% Similarity=0.465 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-C------CChhh-----HHHHHHHHhHHHHhcCChhHHHhh
Q 023871 213 ERREQDLREGLQLYRTGKYEVAREKFESVLGS-K------PTPEE-----SSVASYNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 213 kqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i-~------P~~~e-----~a~A~YN~AcCyaKLgq~~eAI~a 274 (276)
+++..-+..||.+|+.|+|..|+..|++|+.. + +++.. .-.+|.|+|.||.|++.|.+||.+
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~ 279 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIES 279 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHH
Confidence 33344458999999999999999999999933 2 11111 156799999999999999999975
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.49 E-value=0.0013 Score=53.72 Aligned_cols=56 Identities=20% Similarity=0.185 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
+...|..++..|+|++|+..|++++..+|++. .++++++.+|.++|++++|+..++
T Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~ 193 (234)
T TIGR02521 138 LENAGLCALKAGDFDKAEKYLTRALQIDPQRP---ESLLELAELYYLRGQYKDARAYLE 193 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCh---HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45678888999999999999999999999875 578999999999999999988663
No 56
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.49 E-value=0.00025 Score=62.03 Aligned_cols=61 Identities=23% Similarity=0.292 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.+.++..|..+++.|+|++|+..|++.+..-|+.+-...+++.+|-||.++|++++|+..+
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~ 65 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAY 65 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4556777888888888888888888888777777666677788888888888888877654
No 57
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.49 E-value=0.00031 Score=63.93 Aligned_cols=87 Identities=14% Similarity=0.209 Sum_probs=68.5
Q ss_pred ccchHHH-HHHhh--cCCCcchhHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH
Q 023871 177 ELSEKEI-IRAER--NSGVISNRVREIQM--QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES 251 (276)
Q Consensus 177 ~~~e~~~-~~~~r--~~G~i~~al~Eiq~--~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~ 251 (276)
+.++.+. .++++ ..|++++++..++. ..|... ..-.+ ..+.-|..+|+.++|++|+..|++.+...|++++.
T Consensus 29 ~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~--a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~ 105 (243)
T PRK10866 29 DNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQ--VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI 105 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch
Confidence 4577765 45555 78999999888777 445544 22222 25788999999999999999999999999999988
Q ss_pred HHHHHHHhHHHHhcC
Q 023871 252 SVASYNVACCYSKLN 266 (276)
Q Consensus 252 a~A~YN~AcCyaKLg 266 (276)
..++|.++-|+..++
T Consensus 106 ~~a~Y~~g~~~~~~~ 120 (243)
T PRK10866 106 DYVLYMRGLTNMALD 120 (243)
T ss_pred HHHHHHHHHhhhhcc
Confidence 999999999987665
No 58
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.48 E-value=0.00038 Score=61.23 Aligned_cols=71 Identities=15% Similarity=0.110 Sum_probs=57.9
Q ss_pred HHHhhHHHHHHHH-HHHHHHHHHH-HHcCC--HHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 203 QNYMKKKEQKERR-EQDLREGLQL-YRTGK--YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 203 ~nYkk~Kelkkqa-e~~~~eGnaL-fk~gr--YeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
..|.++.++...- +-+..-|..+ +..|+ +++|+..|++||..+|++. .+++|.|.+|.++|++++|+..++
T Consensus 94 ~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~---~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 94 LAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEV---TALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCh---hHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566666666653 3356778887 67787 5999999999999999996 589999999999999999998763
No 59
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.47 E-value=0.00071 Score=56.62 Aligned_cols=83 Identities=16% Similarity=0.079 Sum_probs=61.6
Q ss_pred HHhhcCCCcchhHHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhH
Q 023871 185 RAERNSGVISNRVREIQMQNYMKKKEQKE----RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC 260 (276)
Q Consensus 185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkk----qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~Ac 260 (276)
..-+..|++++++..++. +.++.. ....+++-|..+...|++++|+..|++||.++|++. ..|.|++.
T Consensus 43 ~~~~~~g~~~~A~~~~~~-----al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~---~~~~~la~ 114 (168)
T CHL00033 43 MSAQSEGEYAEALQNYYE-----AMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP---QALNNMAV 114 (168)
T ss_pred HHHHHcCCHHHHHHHHHH-----HHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH---HHHHHHHH
Confidence 344477888888665554 433322 223567899999999999999999999999999886 35677777
Q ss_pred HHH-------hcCChhHHHhhh
Q 023871 261 CYS-------KLNQVPLLLALI 275 (276)
Q Consensus 261 Cya-------KLgq~~eAI~aL 275 (276)
+|. ++|++++|+..+
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHH
Confidence 777 888988776543
No 60
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.45 E-value=0.00035 Score=72.83 Aligned_cols=84 Identities=11% Similarity=0.000 Sum_probs=53.4
Q ss_pred HHHhhcCCCcchhHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHH
Q 023871 184 IRAERNSGVISNRVREIQMQNYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY 262 (276)
Q Consensus 184 ~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkqae~-~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCy 262 (276)
.+.+...|.++++.. .+.++-++..+-.. .++.+..|++.+++++|+..++++|..+|++. .+++++|.|.
T Consensus 93 a~i~~~~g~~~ea~~-----~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~---~~~~~~a~~l 164 (694)
T PRK15179 93 ARALEAAHRSDEGLA-----VWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA---REILLEAKSW 164 (694)
T ss_pred HHHHHHcCCcHHHHH-----HHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH---HHHHHHHHHH
Confidence 477778899999844 44555555555433 34666666666666666666666666666664 4566666666
Q ss_pred HhcCChhHHHhhh
Q 023871 263 SKLNQVPLLLALI 275 (276)
Q Consensus 263 aKLgq~~eAI~aL 275 (276)
.++|++++|++++
T Consensus 165 ~~~g~~~~A~~~y 177 (694)
T PRK15179 165 DEIGQSEQADACF 177 (694)
T ss_pred HHhcchHHHHHHH
Confidence 6666666666554
No 61
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.43 E-value=8.7e-05 Score=75.61 Aligned_cols=55 Identities=18% Similarity=0.148 Sum_probs=43.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
|-+-|=+|.+..+++|||..|++||++.|.+ ..++||++.||..+|-+++|+..|
T Consensus 467 WNRLGAtLAN~~~s~EAIsAY~rALqLqP~y---VR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 467 WNRLGATLANGNRSEEAISAYNRALQLQPGY---VRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHhhHHhcCCcccHHHHHHHHHHHhcCCCe---eeeehhhhhhhhhhhhHHHHHHHH
Confidence 4566666666677777777777777777766 378999999999999999999875
No 62
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.38 E-value=0.00047 Score=74.41 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
.+-|..|.+.|++++|+..|++||+++|++. .+++|+|.||..+|++++|+..++
T Consensus 647 ~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~---~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 647 AALGYALWDSGDIAQSREMLERAHKGLPDDP---ALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4666667777777777777777777777775 578888888888888888887663
No 63
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.37 E-value=0.00054 Score=63.51 Aligned_cols=86 Identities=16% Similarity=0.206 Sum_probs=69.6
Q ss_pred hcCCCcchhHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhc
Q 023871 188 RNSGVISNRVREIQM--QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL 265 (276)
Q Consensus 188 r~~G~i~~al~Eiq~--~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKL 265 (276)
...|++++++..|+. ..|-... -..+..+--|..+|..|+|++|+..|.+++...|+.+....++|+++.||..+
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~---~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~ 230 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDST---YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDK 230 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHc
Confidence 356899999888777 2232221 01123468899999999999999999999999999888889999999999999
Q ss_pred CChhHHHhhhC
Q 023871 266 NQVPLLLALIE 276 (276)
Q Consensus 266 gq~~eAI~aLE 276 (276)
|++++|+..|+
T Consensus 231 g~~~~A~~~~~ 241 (263)
T PRK10803 231 GDTAKAKAVYQ 241 (263)
T ss_pred CCHHHHHHHHH
Confidence 99999998763
No 64
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.37 E-value=0.00043 Score=74.75 Aligned_cols=79 Identities=6% Similarity=0.040 Sum_probs=63.8
Q ss_pred CCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChh
Q 023871 190 SGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVP 269 (276)
Q Consensus 190 ~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~ 269 (276)
.|++++++ ..|.++.++....+.+++.|..+.+.|++++|+..|++||.++|++. .+++|.+.++..+|+++
T Consensus 589 ~Gr~~eAl-----~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~---~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 589 PGQPELAL-----NDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS---NYQAALGYALWDSGDIA 660 (987)
T ss_pred CCCHHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHH
Confidence 35555553 34555555555555567889999999999999999999999999996 58999999999999999
Q ss_pred HHHhhhC
Q 023871 270 LLLALIE 276 (276)
Q Consensus 270 eAI~aLE 276 (276)
+|++.++
T Consensus 661 eAi~~l~ 667 (987)
T PRK09782 661 QSREMLE 667 (987)
T ss_pred HHHHHHH
Confidence 9998763
No 65
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.36 E-value=0.0011 Score=49.25 Aligned_cols=66 Identities=24% Similarity=0.477 Sum_probs=49.1
Q ss_pred ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccc--hhHHHHhhcc-cCceEEEEeec
Q 023871 95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY--GRTMYTIRQR-VGPLLMKMQKR 168 (276)
Q Consensus 95 LGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~--g~~~~air~r-~gpv~L~l~R~ 168 (276)
||+.|.. ++++++|..|.+++.|+++| +++||+|+.+-.. +..+. ..+...++.. ..++.|.+.|.
T Consensus 4 lG~~~~~-~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~------~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 4 IGLELKY-DDGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGE------PVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred EEEEEEE-cCCeEEEEEecCCCCHHHcC-CCCCCEEEEECCE------EcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 7888865 46789999999999999998 9999999998643 22233 3445555543 45678999886
No 66
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00015 Score=72.07 Aligned_cols=66 Identities=20% Similarity=0.246 Sum_probs=58.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHh
Q 023871 205 YMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLA 273 (276)
Q Consensus 205 Ykk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~ 273 (276)
|.--.+...++++.+.+|++.++..+|.+||..|+.|++++|++ +..|.|+|.||..++++++|+-
T Consensus 39 ~s~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~---a~yy~nRAa~~m~~~~~~~a~~ 104 (486)
T KOG0550|consen 39 YSFSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN---ASYYSNRAATLMMLGRFEEALG 104 (486)
T ss_pred ccccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc---hhhhchhHHHHHHHHhHhhccc
Confidence 44445666788888999999999999999999999999999999 4679999999999999998863
No 67
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.00016 Score=67.88 Aligned_cols=56 Identities=21% Similarity=0.217 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHh
Q 023871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLA 273 (276)
Q Consensus 215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~ 273 (276)
+++..+.||.+|..++|.+||+.|.+||.++|+.. .=|-|+|.||.|+.+|+.+..
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~---~Y~tnralchlk~~~~~~v~~ 65 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVA---SYYTNRALCHLKLKHWEPVEE 65 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhcCCCcc---hhhhhHHHHHHHhhhhhhhhh
Confidence 44556889999999999999999999999999995 347899999999999987643
No 68
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.33 E-value=0.00037 Score=72.53 Aligned_cols=82 Identities=15% Similarity=0.171 Sum_probs=68.0
Q ss_pred chhHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCChh-----------------------
Q 023871 194 SNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPE----------------------- 249 (276)
Q Consensus 194 ~~al~Eiq~~nYkk~Kelkkqae~~~-~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~----------------------- 249 (276)
+.++-++....|+|+-++..-..+++ +-||+|-..|+..||.++|.+||.++|+..
T Consensus 298 eqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly 377 (966)
T KOG4626|consen 298 EQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLY 377 (966)
T ss_pred ccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHH
Confidence 55566666788999999998888876 889999999999999999999999999852
Q ss_pred --------hHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 250 --------ESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 250 --------e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+.+.++.|.|..|-++|++++||.+.
T Consensus 378 ~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Y 411 (966)
T KOG4626|consen 378 LKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCY 411 (966)
T ss_pred HHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHH
Confidence 24677888888888888888888764
No 69
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.23 E-value=0.0018 Score=58.97 Aligned_cols=63 Identities=19% Similarity=0.224 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 214 qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
..++++..|..+++.|+|++|+..|++++...|..+....+.++.|-||.+++++++|+..+|
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e 93 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAID 93 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 345578999999999999999999999999999998778889999999999999999998764
No 70
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.21 E-value=0.0012 Score=54.73 Aligned_cols=87 Identities=17% Similarity=0.160 Sum_probs=69.7
Q ss_pred HHHhhcCCCcchhHHHHHHHHHhhHHHH---HHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHh
Q 023871 184 IRAERNSGVISNRVREIQMQNYMKKKEQ---KERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVA 259 (276)
Q Consensus 184 ~~~~r~~G~i~~al~Eiq~~nYkk~Kel---kkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~A 259 (276)
..+-...|+.+++ .+.|.++-+. ..++ +-.++-|-.+..+|+|++|+..+++++...|+++-...+++..|
T Consensus 8 A~a~d~~G~~~~A-----i~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 8 AWAHDSLGREEEA-----IPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred HHHHHhcCCHHHH-----HHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 4555678888888 5667777664 2333 45689999999999999999999999988888655567788899
Q ss_pred HHHHhcCChhHHHhhh
Q 023871 260 CCYSKLNQVPLLLALI 275 (276)
Q Consensus 260 cCyaKLgq~~eAI~aL 275 (276)
-|...+|++++|++.|
T Consensus 83 l~L~~~gr~~eAl~~~ 98 (120)
T PF12688_consen 83 LALYNLGRPKEALEWL 98 (120)
T ss_pred HHHHHCCCHHHHHHHH
Confidence 9999999999999865
No 71
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.20 E-value=0.0033 Score=52.14 Aligned_cols=60 Identities=18% Similarity=0.124 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
-+|+.|-.+...|+.++||..|++||+..++......++-+.+.+|-.+|++++|+..|+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~ 62 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLE 62 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 357889999999999999999999998877777667899999999999999999998774
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=97.18 E-value=0.00098 Score=66.64 Aligned_cols=73 Identities=15% Similarity=0.113 Sum_probs=50.8
Q ss_pred HHHhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhh-------------------------------
Q 023871 203 QNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE------------------------------- 250 (276)
Q Consensus 203 ~nYkk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e------------------------------- 250 (276)
..|+++.++...- ..++..|..++..|+|++|+..|++|+.++|++..
T Consensus 359 ~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p 438 (553)
T PRK12370 359 LLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQ 438 (553)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccc
Confidence 3455555555542 34567788888999999999999999999998521
Q ss_pred -HHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 251 -SSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 251 -~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
...+++|.++||..+|++++|+..+
T Consensus 439 ~~~~~~~~la~~l~~~G~~~eA~~~~ 464 (553)
T PRK12370 439 DNPILLSMQVMFLSLKGKHELARKLT 464 (553)
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 0123667777777777777777654
No 73
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.16 E-value=0.0012 Score=49.18 Aligned_cols=58 Identities=19% Similarity=0.378 Sum_probs=44.8
Q ss_pred CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc--cCceEEEEeec
Q 023871 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VGPLLMKMQKR 168 (276)
Q Consensus 104 dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r--~gpv~L~l~R~ 168 (276)
.+|++|.+|.+++.|+++| |+.||+|+.+... +..+......++... ..++.|++.|.
T Consensus 23 ~~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~------~i~~~~~~~~~l~~~~~~~~i~l~v~r~ 82 (90)
T cd00987 23 TKGVLVASVDPGSPAAKAG-LKPGDVILAVNGK------PVKSVADLRRALAELKPGDKVTLTVLRG 82 (90)
T ss_pred CCEEEEEEECCCCHHHHcC-CCcCCEEEEECCE------ECCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence 4589999999999999999 9999999998643 444555555556543 56789999874
No 74
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.10 E-value=0.0012 Score=44.57 Aligned_cols=41 Identities=20% Similarity=0.086 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhH
Q 023871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC 260 (276)
Q Consensus 217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~Ac 260 (276)
-++.-|..+...|++++|+..|+++|+.+|++. .+|++.+-
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~---~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDP---EAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH---HHHHHhhh
Confidence 456788899999999999999999999999997 46776653
No 75
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.08 E-value=0.0014 Score=68.37 Aligned_cols=81 Identities=16% Similarity=0.058 Sum_probs=60.0
Q ss_pred cCCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCCh
Q 023871 189 NSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV 268 (276)
Q Consensus 189 ~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~ 268 (276)
..+.+++|+.+++..--...... +..+..|..|.+.|+|++|++.|+++|.-.|+.. .+|.+.|.++-+.|+.
T Consensus 132 ~~~~~eeA~~~~~~~l~~~p~~~----~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~---~~~~~~a~~l~~~G~~ 204 (694)
T PRK15179 132 RQQGIEAGRAEIELYFSGGSSSA----REILLEAKSWDEIGQSEQADACFERLSRQHPEFE---NGYVGWAQSLTRRGAL 204 (694)
T ss_pred HhccHHHHHHHHHHHhhcCCCCH----HHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCCH
Confidence 45555566555554211111111 2224788889999999999999999999888775 6899999999999999
Q ss_pred hHHHhhhC
Q 023871 269 PLLLALIE 276 (276)
Q Consensus 269 ~eAI~aLE 276 (276)
++|+.+++
T Consensus 205 ~~A~~~~~ 212 (694)
T PRK15179 205 WRARDVLQ 212 (694)
T ss_pred HHHHHHHH
Confidence 99998864
No 76
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.08 E-value=0.0018 Score=55.84 Aligned_cols=86 Identities=16% Similarity=0.334 Sum_probs=64.8
Q ss_pred ccchHHHH-HHhh--cCCCcchhHHHHHH---HH-HhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh
Q 023871 177 ELSEKEII-RAER--NSGVISNRVREIQM---QN-YMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE 249 (276)
Q Consensus 177 ~~~e~~~~-~~~r--~~G~i~~al~Eiq~---~n-Ykk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~ 249 (276)
++|+.+.. .++- ..|+++.+.+.+.. .+ |..-. -+.|+ +-|-+.|+.++|++|++.|++=|.+.|+.+
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya-~qAqL----~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYA-EQAQL----DLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCccc-HHHHH----HHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 45666643 3333 67888888777776 11 11111 13333 778899999999999999999999999999
Q ss_pred hHHHHHHHHhHHHHhcCC
Q 023871 250 ESSVASYNVACCYSKLNQ 267 (276)
Q Consensus 250 e~a~A~YN~AcCyaKLgq 267 (276)
....++|-++.||..+..
T Consensus 82 ~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 82 NVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred CccHHHHHHHHHHHHHhh
Confidence 989999999999999876
No 77
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.05 E-value=0.0014 Score=64.21 Aligned_cols=85 Identities=11% Similarity=0.105 Sum_probs=67.4
Q ss_pred HHHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHH
Q 023871 184 IRAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY 262 (276)
Q Consensus 184 ~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCy 262 (276)
.+...+.|+++.++..++ +..++... .+.++..|..++..|+|++|+..|+++++..|++. .+++.++.||
T Consensus 29 a~~~~~~~~~~~A~~~~~-----~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~a~~~ 100 (899)
T TIGR02917 29 AKSYLQKNKYKAAIIQLK-----NALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKN---QVLPLLARAY 100 (899)
T ss_pred HHHHHHcCChHhHHHHHH-----HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChh---hhHHHHHHHH
Confidence 455668999999955554 44444443 34567899999999999999999999999998875 4678899999
Q ss_pred HhcCChhHHHhhhC
Q 023871 263 SKLNQVPLLLALIE 276 (276)
Q Consensus 263 aKLgq~~eAI~aLE 276 (276)
..+|++++|+..++
T Consensus 101 ~~~g~~~~a~~~~~ 114 (899)
T TIGR02917 101 LLQGKFQQVLDELP 114 (899)
T ss_pred HHCCCHHHHHHhhc
Confidence 99999999998763
No 78
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.02 E-value=0.0016 Score=60.45 Aligned_cols=60 Identities=12% Similarity=0.087 Sum_probs=54.5
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 216 EQDLREGLQL-YRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 216 e~~~~eGnaL-fk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
..+++.|..| ++.|+|++|+..|++.+...|+......++|-++-+|..+|++++|+..+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f 203 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYF 203 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5578999998 77899999999999999999998766789999999999999999999865
No 79
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0013 Score=62.43 Aligned_cols=56 Identities=25% Similarity=0.375 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHc--------CCCChhh-------HHHHHHHHhHHHHhcCChhHHHhh
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLG--------SKPTPEE-------SSVASYNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~--------i~P~~~e-------~a~A~YN~AcCyaKLgq~~eAI~a 274 (276)
.++||.||++|+|.||+++|..|+. -+|-+++ ..-++.|-|-|+++.|++-++++.
T Consensus 182 ~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh 252 (329)
T KOG0545|consen 182 HQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEH 252 (329)
T ss_pred HHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHH
Confidence 4899999999999999999999983 2465543 256799999999999999998864
No 80
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.01 E-value=0.0035 Score=68.00 Aligned_cols=55 Identities=22% Similarity=0.179 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
...|..+...|+|++|+..|++||.++|++. .++|++|.+|.++|++++|+..++
T Consensus 465 ~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~---~~~~~LA~~~~~~G~~~~A~~~l~ 519 (1157)
T PRK11447 465 AQQAEALENQGKWAQAAELQRQRLALDPGSV---WLTYRLAQDLRQAGQRSQADALMR 519 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3567778899999999999999999999986 479999999999999999998763
No 81
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.98 E-value=0.0026 Score=65.26 Aligned_cols=55 Identities=18% Similarity=0.067 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+...|..+.+.|+|++|+..|++|+.++|++. .+++|.+.+|.++|++++|+..+
T Consensus 287 ~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~---~a~~~La~~l~~~G~~~eA~~~l 341 (656)
T PRK15174 287 VTLYADALIRTGQNEKAIPLLQQSLATHPDLP---YVRAMYARALRQVGQYTAASDEF 341 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHH
Confidence 34667777888888888888888888888875 46778888888888888887765
No 82
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.93 E-value=0.0025 Score=56.09 Aligned_cols=71 Identities=17% Similarity=0.109 Sum_probs=57.9
Q ss_pred HHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHH-HhcCC--hhHHHhhhC
Q 023871 203 QNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY-SKLNQ--VPLLLALIE 276 (276)
Q Consensus 203 ~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCy-aKLgq--~~eAI~aLE 276 (276)
..++++-++... .+.|+.-|..+...|+|++|+..|++|+.++|++. .++++.|.|+ ...|+ .++|++.|+
T Consensus 60 ~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~---~~~~~lA~aL~~~~g~~~~~~A~~~l~ 134 (198)
T PRK10370 60 QALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENA---ELYAALATVLYYQAGQHMTPQTREMID 134 (198)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 445565555544 46789999999999999999999999999999996 5899999984 77787 488887763
No 83
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=96.92 E-value=0.0035 Score=47.19 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=44.5
Q ss_pred CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc--cCceEEEEeec
Q 023871 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VGPLLMKMQKR 168 (276)
Q Consensus 104 dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r--~gpv~L~l~R~ 168 (276)
..|+.|..|.+++.|+++| |++||+|+.+-. ++..++......+... ..++.|.+.|.
T Consensus 9 ~~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing------~~v~~~~d~~~~l~~~~~g~~v~l~v~r~ 68 (79)
T cd00991 9 VAGVVIVGVIVGSPAENAV-LHTGDVIYSING------TPITTLEDFMEALKPTKPGEVITVTVLPS 68 (79)
T ss_pred CCcEEEEEECCCChHHhcC-CCCCCEEEEECC------EEcCCHHHHHHHHhcCCCCCEEEEEEEEC
Confidence 4589999999999999999 999999999853 3555555566666643 45688888873
No 84
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.92 E-value=0.0021 Score=45.44 Aligned_cols=60 Identities=23% Similarity=0.299 Sum_probs=43.4
Q ss_pred HHhhcCCCcchhHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh
Q 023871 185 RAERNSGVISNRVREIQMQNYMKKKEQKE-RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE 249 (276)
Q Consensus 185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkk-qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~ 249 (276)
+.--..|++++++..++. ..+... -.+-++..|..++..|+|++|+..|+++++++|+++
T Consensus 5 ~~~~~~g~~~~A~~~~~~-----~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQ-----ALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHCTHHHHHHHHHHH-----HHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHcCCHHHHHHHHHH-----HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 334467888888666665 222222 234567999999999999999999999999999974
No 85
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.91 E-value=0.0023 Score=65.65 Aligned_cols=82 Identities=11% Similarity=-0.060 Sum_probs=58.8
Q ss_pred HhhcCCCcchhHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh
Q 023871 186 AERNSGVISNRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK 264 (276)
Q Consensus 186 ~~r~~G~i~~al~Eiq~~nYkk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK 264 (276)
+.+..|++++++ ..|++..++.... +.++..|..+...|++++|+..|++||+++|++. .+|++++.+|..
T Consensus 85 ~~l~~g~~~~A~-----~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~---~a~~~la~~l~~ 156 (656)
T PRK15174 85 SPLASSQPDAVL-----QVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNS---QIFALHLRTLVL 156 (656)
T ss_pred hHhhcCCHHHHH-----HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHH
Confidence 334556666663 3444555544432 3356778888889999999999999999888885 478888888888
Q ss_pred cCChhHHHhhh
Q 023871 265 LNQVPLLLALI 275 (276)
Q Consensus 265 Lgq~~eAI~aL 275 (276)
+|++++|+..+
T Consensus 157 ~g~~~eA~~~~ 167 (656)
T PRK15174 157 MDKELQAISLA 167 (656)
T ss_pred CCChHHHHHHH
Confidence 88888887754
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.89 E-value=0.0026 Score=57.91 Aligned_cols=85 Identities=12% Similarity=0.022 Sum_probs=62.2
Q ss_pred hhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH-HHHHHHHhHHHHh
Q 023871 187 ERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES-SVASYNVACCYSK 264 (276)
Q Consensus 187 ~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~-a~A~YN~AcCyaK 264 (276)
-...|+++.+... |++.-++... ..-.+.-|..++..|++++|+..|+++|...|.+... ...|++.|.||..
T Consensus 124 ~~~~G~~~~A~~~-----~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 124 LEEAGQYDRAEEA-----ARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHcCCHHHHHHH-----HHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 3456666666433 3344333333 2334677889999999999999999999988865333 4568899999999
Q ss_pred cCChhHHHhhhC
Q 023871 265 LNQVPLLLALIE 276 (276)
Q Consensus 265 Lgq~~eAI~aLE 276 (276)
+|++++|+..++
T Consensus 199 ~G~~~~A~~~~~ 210 (355)
T cd05804 199 RGDYEAALAIYD 210 (355)
T ss_pred CCCHHHHHHHHH
Confidence 999999998763
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.89 E-value=0.0021 Score=59.85 Aligned_cols=72 Identities=24% Similarity=0.225 Sum_probs=55.5
Q ss_pred HHHhhHHHHHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 203 QNYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 203 ~nYkk~Kelkkqae~-~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
..|+|+..+..+--+ .-+=|-=|+..|+|++|...|++||. +|.+++.+..|-|..-|-++.||.+.|-+.|
T Consensus 90 e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l 162 (250)
T COG3063 90 ESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYL 162 (250)
T ss_pred HHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHH
Confidence 445555555555423 23445556788999999999999995 6888888899999999999999999987765
No 88
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.002 Score=66.06 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=50.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+.+-|...-++++|++||..|++||.++|.+. ..|.-++-||+.+|+++.||+.+
T Consensus 458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~---~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 458 LNNLGHAYRKLNKYEEAIDYYQKALLLSPKDA---STHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHcCCCch---hHHHHHHHHHHHhcChHHHHHHH
Confidence 46889999999999999999999999999996 57889999999999999999875
No 89
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.0025 Score=65.74 Aligned_cols=57 Identities=23% Similarity=0.346 Sum_probs=46.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCCh---------------------------hh-HHHHHHHHhHHHHhcCChhHH
Q 023871 220 REGLQLYRTGKYEVAREKFESVLGSKPTP---------------------------EE-SSVASYNVACCYSKLNQVPLL 271 (276)
Q Consensus 220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~---------------------------~e-~a~A~YN~AcCyaKLgq~~eA 271 (276)
-+|..+|++|+|++|++.|...+...-++ ++ .....||.||.++-.|+|.+|
T Consensus 115 L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA 194 (652)
T KOG2376|consen 115 LRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQA 194 (652)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHH
Confidence 45667999999999999999987544332 12 256799999999999999999
Q ss_pred HhhhC
Q 023871 272 LALIE 276 (276)
Q Consensus 272 I~aLE 276 (276)
++.||
T Consensus 195 ~elL~ 199 (652)
T KOG2376|consen 195 IELLE 199 (652)
T ss_pred HHHHH
Confidence 99985
No 90
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.78 E-value=0.0062 Score=56.04 Aligned_cols=56 Identities=9% Similarity=-0.122 Sum_probs=32.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCChhh--HHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEE--SSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e--~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
..+..+.+.|+|++|+..|++++...|++.. ....+++++.+|.++|++++|+..+
T Consensus 146 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 146 QLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3444445566666666666666655554432 1334556666666777777766654
No 91
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.77 E-value=0.005 Score=60.59 Aligned_cols=55 Identities=24% Similarity=0.277 Sum_probs=50.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
...+.-|.+.++|+.|+....+|..+.|++. ..||..|-||.++|+++.|+.+|+
T Consensus 238 ~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f---~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 238 NLQAEFLLSKKKYELALEIAKKAVELSPSEF---ETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCchhH---HHHHHHHHHHHhcCCHHHHHHHHh
Confidence 4566667899999999999999999999995 689999999999999999998875
No 92
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.75 E-value=0.0045 Score=60.64 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=36.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
++..|..+.+.|++++|+..|++++...|++. .++++++.+|.++|++++|+..+
T Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~ 793 (899)
T TIGR02917 739 AIKLHRALLASGNTAEAVKTLEAWLKTHPNDA---VLRTALAELYLAQKDYDKAIKHY 793 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCcCHHHHHHHH
Confidence 34455556666666666666666666666654 46777777777777777776654
No 93
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.75 E-value=0.002 Score=40.33 Aligned_cols=33 Identities=33% Similarity=0.364 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh
Q 023871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTP 248 (276)
Q Consensus 216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~ 248 (276)
+-++..|..+.++|+|++|+..|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 457788999999999999999999999999953
No 94
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.74 E-value=0.0017 Score=46.29 Aligned_cols=54 Identities=28% Similarity=0.373 Sum_probs=43.4
Q ss_pred hcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCC
Q 023871 188 RNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTG-KYEVAREKFESVLGSKP 246 (276)
Q Consensus 188 r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~g-rYeEAI~~Ye~AL~i~P 246 (276)
...|++++++ ..|+++.++... ..-+++.|..+++.| +|++|+..|++||+++|
T Consensus 14 ~~~~~~~~A~-----~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 14 FQQGDYEEAI-----EYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHTTHHHHHH-----HHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHcCCHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3677888884 556666666654 345789999999999 79999999999999998
No 95
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.70 E-value=0.0037 Score=67.73 Aligned_cols=78 Identities=19% Similarity=0.174 Sum_probs=49.0
Q ss_pred hhcCCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcC
Q 023871 187 ERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN 266 (276)
Q Consensus 187 ~r~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLg 266 (276)
-+..|++++++.-++.. .......+..|..+.+.|+|++|+..|+++|+++|++. .+++|++.+|..+|
T Consensus 583 l~~~G~~~eA~~~l~~~--------p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~---~a~~~la~~~~~~g 651 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQQ--------PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNA---DARLGLIEVDIAQG 651 (1157)
T ss_pred HHHCCCHHHHHHHHHhC--------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCC
Confidence 34667777776555520 00111234556666777777777777777777777764 46777777777777
Q ss_pred ChhHHHhhh
Q 023871 267 QVPLLLALI 275 (276)
Q Consensus 267 q~~eAI~aL 275 (276)
++++|++.|
T Consensus 652 ~~~eA~~~l 660 (1157)
T PRK11447 652 DLAAARAQL 660 (1157)
T ss_pred CHHHHHHHH
Confidence 777776654
No 96
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=96.65 E-value=0.0086 Score=43.78 Aligned_cols=56 Identities=21% Similarity=0.481 Sum_probs=43.3
Q ss_pred CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc-cCceEEEEeec
Q 023871 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR-VGPLLMKMQKR 168 (276)
Q Consensus 106 gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r-~gpv~L~l~R~ 168 (276)
.+.|..|.+++.|+++| |++||+|+.+... +..++......+... ...+.|.+.|.
T Consensus 13 ~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~------~i~~~~~~~~~l~~~~~~~~~l~v~r~ 69 (79)
T cd00989 13 EPVIGEVVPGSPAAKAG-LKAGDRILAINGQ------KIKSWEDLVDAVQENPGKPLTLTVERN 69 (79)
T ss_pred CcEEEeECCCCHHHHcC-CCCCCEEEEECCE------ECCCHHHHHHHHHHCCCceEEEEEEEC
Confidence 58999999999999999 9999999998653 455555566666554 45788888773
No 97
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.63 E-value=0.0086 Score=53.73 Aligned_cols=88 Identities=18% Similarity=0.138 Sum_probs=55.0
Q ss_pred HHhhcCCCcchhHHHHHH----------------------HHHhhHHHHHHHHHH--------HHHHHHHHHHcCCHHHH
Q 023871 185 RAERNSGVISNRVREIQM----------------------QNYMKKKEQKERREQ--------DLREGLQLYRTGKYEVA 234 (276)
Q Consensus 185 ~~~r~~G~i~~al~Eiq~----------------------~nYkk~Kelkkqae~--------~~~eGnaLfk~grYeEA 234 (276)
......|+.++++.-++. ..+.+.+++-+.... |..-|..++.+|+|++|
T Consensus 154 ~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~A 233 (280)
T PF13429_consen 154 EIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEA 233 (280)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccc
Confidence 334578888888887777 234444444443322 24567788999999999
Q ss_pred HHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 235 REKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 235 I~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+..|++++...|+++ ..+.+.|-++.+.|+.++|++..
T Consensus 234 l~~~~~~~~~~p~d~---~~~~~~a~~l~~~g~~~~A~~~~ 271 (280)
T PF13429_consen 234 LEYLEKALKLNPDDP---LWLLAYADALEQAGRKDEALRLR 271 (280)
T ss_dssp HHHHHHHHHHSTT-H---HHHHHHHHHHT------------
T ss_pred ccccccccccccccc---ccccccccccccccccccccccc
Confidence 999999999999997 57889999999999999998753
No 98
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.59 E-value=0.0089 Score=54.79 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=41.9
Q ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHcC---CCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 219 LREGLQLYRT-GKYEVAREKFESVLGS---KPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 219 ~~eGnaLfk~-grYeEAI~~Ye~AL~i---~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
.+-|..+.+. |+|++|+..|++|+++ +........++-+.|.++++++++++|++.+|
T Consensus 118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e 179 (282)
T PF14938_consen 118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYE 179 (282)
T ss_dssp HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3445555556 8999999999999954 23333347788999999999999999998864
No 99
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.58 E-value=0.0068 Score=52.27 Aligned_cols=62 Identities=21% Similarity=0.260 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
..+++++|.++++.|+|++|+..|+....--|-.+-...+..+++-+|.+.+++++|+..++
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~ 71 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYD 71 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 35688999999999999999999999998888877667899999999999999999998764
No 100
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.51 E-value=0.0072 Score=55.64 Aligned_cols=87 Identities=14% Similarity=0.008 Sum_probs=63.7
Q ss_pred HHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhh-HHHHHHHHhHHH
Q 023871 185 RAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE-SSVASYNVACCY 262 (276)
Q Consensus 185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e-~a~A~YN~AcCy 262 (276)
......|++++++..++. ..++... .+-+...|..++..|+|++|+..|++++...+.... ...++++++.+|
T Consensus 43 ~~~~~~~~~~~A~~~~~~-----al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIE-----MLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHhcCChHHHHHHHHH-----HHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 444577888888666665 3333222 233567888889999999999999999975443322 246799999999
Q ss_pred HhcCChhHHHhhhC
Q 023871 263 SKLNQVPLLLALIE 276 (276)
Q Consensus 263 aKLgq~~eAI~aLE 276 (276)
.+.|++++|+..++
T Consensus 118 ~~~g~~~~A~~~~~ 131 (389)
T PRK11788 118 LKAGLLDRAEELFL 131 (389)
T ss_pred HHCCCHHHHHHHHH
Confidence 99999999998763
No 101
>PRK15331 chaperone protein SicA; Provisional
Probab=96.50 E-value=0.005 Score=54.37 Aligned_cols=77 Identities=8% Similarity=0.065 Sum_probs=59.6
Q ss_pred cCCCcchhHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh
Q 023871 189 NSGVISNRVREIQM----QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK 264 (276)
Q Consensus 189 ~~G~i~~al~Eiq~----~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK 264 (276)
..|+++.|.+-||- .+|. .+=|+.-|-....+|+|++||..|.-|..++++++ ...|..+-||..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n--------~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp---~p~f~agqC~l~ 117 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYN--------PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY---RPVFFTGQCQLL 117 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC---CccchHHHHHHH
Confidence 78888888888876 2222 11133444444667999999999999999999886 568999999999
Q ss_pred cCChhHHHhhhC
Q 023871 265 LNQVPLLLALIE 276 (276)
Q Consensus 265 Lgq~~eAI~aLE 276 (276)
+|+.+.|..+++
T Consensus 118 l~~~~~A~~~f~ 129 (165)
T PRK15331 118 MRKAAKARQCFE 129 (165)
T ss_pred hCCHHHHHHHHH
Confidence 999999998874
No 102
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.38 E-value=0.0069 Score=34.21 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh
Q 023871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTP 248 (276)
Q Consensus 217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~ 248 (276)
.++..|..++..++|++|+..|++++.++|++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 35688999999999999999999999998863
No 103
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.37 E-value=0.0071 Score=55.10 Aligned_cols=54 Identities=22% Similarity=0.213 Sum_probs=48.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
..|..+...|+|++|+..|++++++.|++. .++++.+.+|..+|++++|+..|+
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~---~~~~~la~i~~~~g~~~eA~~~l~ 172 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDA---WAVHAVAHVLEMQGRFKEGIAFME 172 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCc---HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456677899999999999999999999995 579999999999999999998763
No 104
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.0085 Score=62.74 Aligned_cols=73 Identities=16% Similarity=0.240 Sum_probs=58.7
Q ss_pred HHHhhHHHHHHHHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHcCCCChh---hHHHHHHHHhHHHHhcCChhHHHhh
Q 023871 203 QNYMKKKEQKERREQD-----LREGLQLYRTGKYEVAREKFESVLGSKPTPE---ESSVASYNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 203 ~nYkk~Kelkkqae~~-----~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~---e~a~A~YN~AcCyaKLgq~~eAI~a 274 (276)
.+..--++|-+.+-.| -+.+-.+|+..+|..++..|..-|.-=|.+. ..+..+-|.||||++|.|.|.|++.
T Consensus 337 ~~~~t~~~lTkE~~~~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~ 416 (872)
T KOG4814|consen 337 ENFSTQMELTKEAISCIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEV 416 (872)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4556667777776655 3788889999999999999999994444432 3388999999999999999999986
Q ss_pred h
Q 023871 275 I 275 (276)
Q Consensus 275 L 275 (276)
.
T Consensus 417 ~ 417 (872)
T KOG4814|consen 417 Y 417 (872)
T ss_pred H
Confidence 5
No 105
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.35 E-value=0.0085 Score=57.42 Aligned_cols=69 Identities=20% Similarity=0.194 Sum_probs=42.5
Q ss_pred HHHhhHHHHHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871 203 QNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 203 ~nYkk~Kelkkqae~~-~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a 274 (276)
+.|-++-+|...---. .+++-++-++|.|+.||.--+.||.+||.+ +.+|.-+...|+-+|++++|+++
T Consensus 102 ~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y---skay~RLG~A~~~~gk~~~A~~a 171 (304)
T KOG0553|consen 102 DKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY---SKAYGRLGLAYLALGKYEEAIEA 171 (304)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH---HHHHHHHHHHHHccCcHHHHHHH
Confidence 4455555554332111 266666666777777777777777777666 35666677777777777776665
No 106
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.31 E-value=0.013 Score=61.00 Aligned_cols=54 Identities=13% Similarity=0.038 Sum_probs=27.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+..|..+...|++++|+..|+++|++.|++. .++++.+.++.+.++.++|+..|
T Consensus 120 ~~la~~l~~~g~~~~Al~~l~~al~~~P~~~---~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 120 LALAYVYKRAGRHWDELRAMTQALPRAPQTQ---QYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCChHHHHHHH
Confidence 3444444555555555555555555555553 24444555555555555555443
No 107
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.28 E-value=0.012 Score=42.21 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=43.8
Q ss_pred cCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH
Q 023871 189 NSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES 251 (276)
Q Consensus 189 ~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~ 251 (276)
..+++++++ ..+.+..++... ..-++..|..+++.|+|++|+..|+++|+.+|++...
T Consensus 7 ~~~~~~~A~-----~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 7 QQEDYEEAL-----EVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred hCCCHHHHH-----HHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 345555553 344555555444 3556799999999999999999999999999998754
No 108
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.28 E-value=0.013 Score=54.49 Aligned_cols=93 Identities=19% Similarity=0.178 Sum_probs=69.3
Q ss_pred cchHHHHHHhh----cCCCcchhHHHHHHH--HHhhHHHHHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhh
Q 023871 178 LSEKEIIRAER----NSGVISNRVREIQMQ--NYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEE 250 (276)
Q Consensus 178 ~~e~~~~~~~r----~~G~i~~al~Eiq~~--nYkk~Kelkkqae~-~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e 250 (276)
+++...+++|- ..|+++++....++. .+--.-. +.+.- .-++|-++.+++.|+.||.--.+||++.|.+.
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~--e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~- 168 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST--EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYE- 168 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH--HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH-
Confidence 44555566666 568999987766661 1111111 11212 23899999999999999999999999999996
Q ss_pred HHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 251 SSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 251 ~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.|.--+|-.|.++.++++||+.+
T Consensus 169 --kAl~RRAeayek~ek~eealeDy 191 (271)
T KOG4234|consen 169 --KALERRAEAYEKMEKYEEALEDY 191 (271)
T ss_pred --HHHHHHHHHHHhhhhHHHHHHHH
Confidence 67889999999999999999864
No 109
>PRK15331 chaperone protein SicA; Provisional
Probab=96.21 E-value=0.016 Score=51.21 Aligned_cols=58 Identities=12% Similarity=0.081 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.+..+.-|-.+|+.|+|++|...|.-..-.+|.+.++ |...|+||-.+++++.||++.
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y---~~GLaa~~Q~~k~y~~Ai~~Y 94 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDY---TMGLAAVCQLKKQFQKACDLY 94 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999999999999999765 899999999999999999863
No 110
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.039 Score=54.72 Aligned_cols=54 Identities=20% Similarity=0.148 Sum_probs=49.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.+-+.-+-|+++|.+||.+-+++|+++|++. .|+|-++.||+.+++++.|+..+
T Consensus 261 lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~---KALyRrG~A~l~~~e~~~A~~df 314 (397)
T KOG0543|consen 261 LNLAACYLKLKEYKEAIESCNKVLELDPNNV---KALYRRGQALLALGEYDLARDDF 314 (397)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhcCCCch---hHHHHHHHHHHhhccHHHHHHHH
Confidence 3666777899999999999999999999996 79999999999999999999765
No 111
>PRK11186 carboxy-terminal protease; Provisional
Probab=96.13 E-value=0.014 Score=60.99 Aligned_cols=72 Identities=21% Similarity=0.319 Sum_probs=51.5
Q ss_pred ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccc--hhHHHHhhccc-CceEEEEeec
Q 023871 95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY--GRTMYTIRQRV-GPLLMKMQKR 168 (276)
Q Consensus 95 LGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~--g~~~~air~r~-gpv~L~l~R~ 168 (276)
+|+.+.. .+|+++|..|.|||.|++++.|++||+|++|.. =|.++.+..+. ..+...|+... ..|.|++.|.
T Consensus 246 IGa~l~~-~~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~-~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~ 320 (667)
T PRK11186 246 IGAVLQM-DDDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQ-DGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA 320 (667)
T ss_pred EEEEEEE-eCCeEEEEEccCCChHHHhCCCCCCCEEEEECC-CCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence 4777766 467899999999999999955999999999972 12334433322 25677787444 4568888874
No 112
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.10 E-value=0.02 Score=50.17 Aligned_cols=75 Identities=19% Similarity=0.305 Sum_probs=53.7
Q ss_pred cCCCcchhHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcC
Q 023871 189 NSGVISNRVREIQM--QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN 266 (276)
Q Consensus 189 ~~G~i~~al~Eiq~--~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLg 266 (276)
..|++++++..+.. ..|-..... . +..+.-|..+|+.|+|++|+..|++-+..-|+.+....++|.++-|+.++.
T Consensus 17 ~~g~y~~Ai~~f~~l~~~~P~s~~a-~--~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~ 93 (203)
T PF13525_consen 17 QQGDYEEAIKLFEKLIDRYPNSPYA-P--QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQI 93 (203)
T ss_dssp HCT-HHHHHHHHHHHHHH-TTSTTH-H--HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHH-H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhC
Confidence 77888888777666 222221111 1 124688999999999999999999999999999888899999999987763
No 113
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=96.09 E-value=0.011 Score=58.33 Aligned_cols=92 Identities=18% Similarity=0.330 Sum_probs=63.1
Q ss_pred ccceEEEEecCcc---eeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccC
Q 023871 83 KYEEYEVEIEQPY---GLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG 159 (276)
Q Consensus 83 ~~~~y~V~l~KPL---Gl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~g 159 (276)
....+..++...+ |+.+...++|++.|.++.+|+-|+|+| |++||.|+.|- |..+-... +..+...||.+.|
T Consensus 87 ~~~~~~~~~~~~~~GiG~~i~~~~~~~~~V~s~~~~~PA~kag-i~~GD~I~~Id---G~~~~~~~-~~~av~~irG~~G 161 (406)
T COG0793 87 DAAEFRTDTSGEFGGIGIELQMEDIGGVKVVSPIDGSPAAKAG-IKPGDVIIKID---GKSVGGVS-LDEAVKLIRGKPG 161 (406)
T ss_pred HHHHhhhhccccccceeEEEEEecCCCcEEEecCCCChHHHcC-CCCCCEEEEEC---CEEccCCC-HHHHHHHhCCCCC
Confidence 3344555555554 478877666999999999999999999 99999999998 32222221 1345667776554
Q ss_pred -ceEEEEeecCCCcccccccc
Q 023871 160 -PLLMKMQKRYGKMEQTGELS 179 (276)
Q Consensus 160 -pv~L~l~R~~~~~~~~~~~~ 179 (276)
+|.|++.|.-+.-...-.++
T Consensus 162 t~V~L~i~r~~~~k~~~v~l~ 182 (406)
T COG0793 162 TKVTLTILRAGGGKPFTVTLT 182 (406)
T ss_pred CeEEEEEEEcCCCceeEEEEE
Confidence 67999999844433333344
No 114
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.06 E-value=0.015 Score=41.03 Aligned_cols=61 Identities=20% Similarity=0.232 Sum_probs=42.7
Q ss_pred CCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHH
Q 023871 190 SGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVAS 255 (276)
Q Consensus 190 ~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~ 255 (276)
.|++++|+.. |++.-+.... .+-++.-|..+++.|+|++|...+++++..+|+++.+..++
T Consensus 4 ~~~~~~A~~~-----~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 4 QGDYDEAIEL-----LEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp TTHHHHHHHH-----HHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred ccCHHHHHHH-----HHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 4566666444 4444444443 23356889999999999999999999999999987654443
No 115
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=96.02 E-value=0.023 Score=42.24 Aligned_cols=55 Identities=20% Similarity=0.399 Sum_probs=41.6
Q ss_pred CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-c-cCceEEEEeec
Q 023871 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPLLMKMQKR 168 (276)
Q Consensus 106 gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-r-~gpv~L~l~R~ 168 (276)
|+.|..|.+++.|+. | |++||+|+.+-. ++..++..+..++.. + ..++.|.+.|.
T Consensus 9 Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing------~~v~~~~~~~~~l~~~~~~~~v~l~v~r~ 65 (79)
T cd00986 9 GVYVTSVVEGMPAAG-K-LKAGDHIIAVDG------KPFKEAEELIDYIQSKKEGDTVKLKVKRE 65 (79)
T ss_pred CEEEEEECCCCchhh-C-CCCCCEEEEECC------EECCCHHHHHHHHHhCCCCCEEEEEEEEC
Confidence 699999999998885 7 999999999854 355555556666663 3 44688888874
No 116
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=95.91 E-value=0.023 Score=53.69 Aligned_cols=68 Identities=19% Similarity=0.323 Sum_probs=47.9
Q ss_pred ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc-cCceEEEEeec
Q 023871 95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR-VGPLLMKMQKR 168 (276)
Q Consensus 95 LGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r-~gpv~L~l~R~ 168 (276)
+|+.+.. .+++++|..|.+++.|+++| |++||+|+++... .+-.. .+..+...++.. ..++.|++.|.
T Consensus 53 lG~~~~~-~~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~---~v~~~-~~~~~~~~l~~~~g~~v~l~v~R~ 121 (334)
T TIGR00225 53 IGIQVGM-DDGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGK---SVAGM-SLDDAVALIRGKKGTKVSLEILRA 121 (334)
T ss_pred EEEEEEE-ECCEEEEEEeCCCChHHHcC-CCCCCEEEEECCE---ECCCC-CHHHHHHhccCCCCCEEEEEEEeC
Confidence 7888866 46799999999999999999 9999999998653 22110 122344444432 34678888775
No 117
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.85 E-value=0.005 Score=62.00 Aligned_cols=57 Identities=16% Similarity=0.099 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a 274 (276)
+++..++++.+|+.+.|+.|+..|.+||+++||.. ..+.|+|..|.|.+.+..|+..
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca---~~~anRa~a~lK~e~~~~Al~D 60 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCA---IYFANRALAHLKVESFGGALHD 60 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcce---eeechhhhhheeechhhhHHHH
Confidence 34455788999999999999999999999999984 4577888888888887777653
No 118
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=95.78 E-value=0.016 Score=57.33 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
++-|++|+..|+|.+||.-|..|++.+|+++ .+.|.+|.+|+-+|+-..||..|
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y---~aifrRaT~yLAmGksk~al~Dl 95 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNY---QAIFRRATVYLAMGKSKAALQDL 95 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhH---HHHHHHHHHHhhhcCCccchhhH
Confidence 4889999999999999999999999999996 68999999999999998888766
No 119
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=95.76 E-value=0.02 Score=51.46 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhh-------------------------------HHHHHHHHhHHHH
Q 023871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE-------------------------------SSVASYNVACCYS 263 (276)
Q Consensus 215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e-------------------------------~a~A~YN~AcCya 263 (276)
..-|+..|.-+.+.|++++|+..|++||.++|++.+ ....|...|.||.
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~ 225 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYL 225 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhc
Confidence 344678888889999999999999999999999632 0234566777777
Q ss_pred hcCChhHHHhhh
Q 023871 264 KLNQVPLLLALI 275 (276)
Q Consensus 264 KLgq~~eAI~aL 275 (276)
.+|+.++|+..+
T Consensus 226 ~lg~~~~Al~~~ 237 (280)
T PF13429_consen 226 QLGRYEEALEYL 237 (280)
T ss_dssp HHT-HHHHHHHH
T ss_pred cccccccccccc
Confidence 777777777655
No 120
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.034 Score=56.49 Aligned_cols=73 Identities=14% Similarity=0.155 Sum_probs=59.5
Q ss_pred HHHhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh-------------------------------h
Q 023871 203 QNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE-------------------------------E 250 (276)
Q Consensus 203 ~nYkk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~-------------------------------e 250 (276)
-.||++.+|++.- ..|--.|-+..++++-..||.+|..|+++||.|. .
T Consensus 351 ~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn 430 (559)
T KOG1155|consen 351 MYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN 430 (559)
T ss_pred HHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC
Confidence 4578888888875 5678899999999999999999999999999872 1
Q ss_pred HHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 251 SSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 251 ~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.+..|--.+-||.|+++.++||.+.
T Consensus 431 DsRlw~aLG~CY~kl~~~~eAiKCy 455 (559)
T KOG1155|consen 431 DSRLWVALGECYEKLNRLEEAIKCY 455 (559)
T ss_pred chHHHHHHHHHHHHhccHHHHHHHH
Confidence 2345566677999999999999874
No 121
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=95.71 E-value=0.038 Score=57.60 Aligned_cols=79 Identities=10% Similarity=-0.043 Sum_probs=61.9
Q ss_pred cCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCC
Q 023871 189 NSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ 267 (276)
Q Consensus 189 ~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq 267 (276)
..|+.++++..++. ..++... .+-++..|..+...|++++|+..|++||+++|++. .+++..|-++.++++
T Consensus 371 ~~g~~~eA~~~l~~-----al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~---~l~~~~a~~al~~~~ 442 (765)
T PRK10049 371 YSNDLPQAEMRARE-----LAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNI---NLEVEQAWTALDLQE 442 (765)
T ss_pred HcCCHHHHHHHHHH-----HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHhCC
Confidence 56777777665554 2221111 12346888888999999999999999999999996 489999999999999
Q ss_pred hhHHHhhh
Q 023871 268 VPLLLALI 275 (276)
Q Consensus 268 ~~eAI~aL 275 (276)
+++|...+
T Consensus 443 ~~~A~~~~ 450 (765)
T PRK10049 443 WRQMDVLT 450 (765)
T ss_pred HHHHHHHH
Confidence 99999876
No 122
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=95.63 E-value=0.022 Score=55.52 Aligned_cols=67 Identities=18% Similarity=0.442 Sum_probs=48.6
Q ss_pred ceeEEeeeC-----------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-c-cCce
Q 023871 95 YGLKFAKGR-----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPL 161 (276)
Q Consensus 95 LGl~f~e~~-----------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-r-~gpv 161 (276)
|||.+..-. ..|++|.+|.+++.|+++| |++||+|+++-.. +..++.....++.. . ...+
T Consensus 236 lGi~~~~~~~~~~~~lgl~~~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~------~i~~~~~~~~~l~~~~~g~~v 308 (428)
T TIGR02037 236 LGVTIQEVTSDLAKSLGLEKQRGALVAQVLPGSPAEKAG-LKAGDVILSVNGK------PISSFADLRRAIGTLKPGKKV 308 (428)
T ss_pred CceEeecCCHHHHHHcCCCCCCceEEEEccCCCChHHcC-CCCCCEEEEECCE------EcCCHHHHHHHHHhcCCCCEE
Confidence 788876532 3589999999999999999 9999999998642 34444444455543 2 3467
Q ss_pred EEEEeec
Q 023871 162 LMKMQKR 168 (276)
Q Consensus 162 ~L~l~R~ 168 (276)
.|++.|.
T Consensus 309 ~l~v~R~ 315 (428)
T TIGR02037 309 TLGILRK 315 (428)
T ss_pred EEEEEEC
Confidence 8888874
No 123
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.53 E-value=0.043 Score=58.89 Aligned_cols=83 Identities=24% Similarity=0.214 Sum_probs=63.3
Q ss_pred HHHhhcCCCcchhHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHh
Q 023871 184 IRAERNSGVISNRVREIQM----QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVA 259 (276)
Q Consensus 184 ~~~~r~~G~i~~al~Eiq~----~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~A 259 (276)
.++=-+.|++..+++-+=. +-|.. .--|+..|.=+-.+|.|++|+..|++||.++|++. .+..-+|
T Consensus 421 a~al~~~~~~~~Al~~l~~i~~~~~~~~-------~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~---D~Ri~La 490 (895)
T KOG2076|consen 421 ADALTNIGKYKEALRLLSPITNREGYQN-------AFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNL---DARITLA 490 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHhcCccccc-------hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCch---hhhhhHH
Confidence 4444466666666655444 22222 22467778888889999999999999999999996 4677889
Q ss_pred HHHHhcCChhHHHhhhC
Q 023871 260 CCYSKLNQVPLLLALIE 276 (276)
Q Consensus 260 cCyaKLgq~~eAI~aLE 276 (276)
..|.++|+.++|++.||
T Consensus 491 sl~~~~g~~EkalEtL~ 507 (895)
T KOG2076|consen 491 SLYQQLGNHEKALETLE 507 (895)
T ss_pred HHHHhcCCHHHHHHHHh
Confidence 99999999999999886
No 124
>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]
Probab=95.53 E-value=0.022 Score=58.20 Aligned_cols=73 Identities=22% Similarity=0.396 Sum_probs=56.1
Q ss_pred cCcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeec
Q 023871 92 EQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR 168 (276)
Q Consensus 92 ~KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~ 168 (276)
.-|||+++....++.++|+.|..||.++++|.+.+||.|.-+-.+ . ......-++...++.-.|++++++-=.
T Consensus 133 ~eplG~Tik~~e~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi---~-v~~~~~~e~q~~l~~~~G~itfkiiP~ 205 (542)
T KOG0609|consen 133 GEPLGATIRVEEDTKVVVARIMHGGMADRQGLLHVGDEILEVNGI---S-VANKSPEELQELLRNSRGSITFKIIPS 205 (542)
T ss_pred CCccceEEEeccCCccEEeeeccCCcchhccceeeccchheecCe---e-cccCCHHHHHHHHHhCCCcEEEEEccc
Confidence 348999999877779999999999999999999999999988754 1 112234456667776668888876443
No 125
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=95.52 E-value=0.025 Score=59.63 Aligned_cols=78 Identities=14% Similarity=0.126 Sum_probs=58.3
Q ss_pred CCCcchhHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCCh
Q 023871 190 SGVISNRVREIQMQNYMKKKEQKE-RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV 268 (276)
Q Consensus 190 ~G~i~~al~Eiq~~nYkk~Kelkk-qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~ 268 (276)
.++++++.+|++. ..++.. +..-|+..|-..-++++++.|...|...+.++|++. .+|.|.+|.|.++++-
T Consensus 498 ~~~fs~~~~hle~-----sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~---eaWnNls~ayi~~~~k 569 (777)
T KOG1128|consen 498 NKDFSEADKHLER-----SLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNA---EAWNNLSTAYIRLKKK 569 (777)
T ss_pred chhHHHHHHHHHH-----HhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCch---hhhhhhhHHHHHHhhh
Confidence 3555555555443 333333 346688889888999999999999999999999986 4899999999999988
Q ss_pred hHHHhhh
Q 023871 269 PLLLALI 275 (276)
Q Consensus 269 ~eAI~aL 275 (276)
.+|-..|
T Consensus 570 ~ra~~~l 576 (777)
T KOG1128|consen 570 KRAFRKL 576 (777)
T ss_pred HHHHHHH
Confidence 8776544
No 126
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=95.50 E-value=0.039 Score=52.98 Aligned_cols=51 Identities=14% Similarity=0.105 Sum_probs=44.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 222 GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 222 GnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+......|+|++|+..++++++..|++. .+++-.+-+|.++|+|++|++.|
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~---~al~ll~~~~~~~gdw~~a~~~l 210 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHP---EVLRLAEQAYIRTGAWSSLLDIL 210 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHHhHHHHHHHH
Confidence 4455778999999999999999999997 47778899999999999999665
No 127
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=95.50 E-value=0.025 Score=55.13 Aligned_cols=57 Identities=18% Similarity=0.391 Sum_probs=44.1
Q ss_pred CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc--ccCceEEEEeec
Q 023871 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ--RVGPLLMKMQKR 168 (276)
Q Consensus 105 Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~--r~gpv~L~l~R~ 168 (276)
.|++|.+|.+++.|+++| +++||+|+.+... +..++-....+|+. ..+++.|.+.|.
T Consensus 362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~------~V~s~~d~~~~l~~~~~g~~v~l~v~R~ 420 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAG-LQPGDVILSVNQQ------PVSSVAELRKVLDRAKKGGRVALLILRG 420 (428)
T ss_pred CceEEEEeCCCCHHHHcC-CCCCCEEEEECCE------EcCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence 589999999999999999 9999999998642 44444444555553 356789999885
No 128
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.47 E-value=0.021 Score=59.29 Aligned_cols=52 Identities=17% Similarity=0.186 Sum_probs=33.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 222 GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 222 GnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
|..+.+.|++++||..|++|+-++|.++ ...|++|..+.-++++++|+.-||
T Consensus 530 g~~~~~~k~~d~AL~~~~~A~~ld~kn~---l~~~~~~~il~~~~~~~eal~~LE 581 (638)
T KOG1126|consen 530 GRIQHQLKRKDKALQLYEKAIHLDPKNP---LCKYHRASILFSLGRYVEALQELE 581 (638)
T ss_pred hHHHHHhhhhhHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhhcchHHHHHHHH
Confidence 4444455555555555555555555553 457777777888888888877765
No 129
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.47 E-value=0.012 Score=36.87 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=21.4
Q ss_pred HHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 252 SVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 252 a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
+.+|||++.||..++++++|+.+++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~ 25 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQ 25 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHH
Confidence 3689999999999999999998763
No 130
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.46 E-value=0.0085 Score=39.06 Aligned_cols=28 Identities=29% Similarity=0.264 Sum_probs=22.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCC
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSK 245 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~ 245 (276)
+.+-|+.+.+.|+|++|+..|++||.+.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3567889999999999999999977544
No 131
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.37 E-value=0.047 Score=51.30 Aligned_cols=61 Identities=31% Similarity=0.378 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+..|+++|++..+.|+|++|+..|++...--|..+....+....+-.|.|.+++++|+..+
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~ 94 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYI 94 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3566777777777777777777777777666766655667777777777777777777654
No 132
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.33 E-value=0.067 Score=42.35 Aligned_cols=58 Identities=19% Similarity=0.229 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHh
Q 023871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLA 273 (276)
Q Consensus 216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~ 273 (276)
..-+++|+.||...+.++||..+++||..-++.++...++--.+-.|.-.|++.+.++
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456999999999999999999999998888877666777777888888888888765
No 133
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.31 E-value=0.028 Score=57.83 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHH
Q 023871 195 NRVREIQMQNYMKKKEQKERREQDLREGLQL--YRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLL 272 (276)
Q Consensus 195 ~al~Eiq~~nYkk~Kelkkqae~~~~eGnaL--fk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI 272 (276)
.-+.||++.+-.-+.++..+..-.++.|+-. +-.|.|+.||++|+.||..+|+++ .+|--..+..+.-.+..+||
T Consensus 408 ~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~---~lWNRLGAtLAN~~~s~EAI 484 (579)
T KOG1125|consen 408 SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDY---LLWNRLGATLANGNRSEEAI 484 (579)
T ss_pred HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchH---HHHHHhhHHhcCCcccHHHH
Confidence 4567777777666666664333345555544 456999999999999999999996 67888899999999999999
Q ss_pred hhh
Q 023871 273 ALI 275 (276)
Q Consensus 273 ~aL 275 (276)
.+.
T Consensus 485 sAY 487 (579)
T KOG1125|consen 485 SAY 487 (579)
T ss_pred HHH
Confidence 874
No 134
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=95.27 E-value=0.067 Score=50.19 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=53.4
Q ss_pred cCCCcchhHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcC
Q 023871 189 NSGVISNRVREIQM--QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN 266 (276)
Q Consensus 189 ~~G~i~~al~Eiq~--~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLg 266 (276)
+.+.+.+++.-|++ +.|..- ..-..-.+..+..+|+|+||....++||+.+|+++ .++.|+++|...+|
T Consensus 179 g~e~~~~A~y~f~El~~~~~~t------~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~---d~LaNliv~~~~~g 249 (290)
T PF04733_consen 179 GGEKYQDAFYIFEELSDKFGST------PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP---DTLANLIVCSLHLG 249 (290)
T ss_dssp TTTCCCHHHHHHHHHHCCS--S------HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH---HHHHHHHHHHHHTT
T ss_pred CchhHHHHHHHHHHHHhccCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH---HHHHHHHHHHHHhC
Confidence 55678888888877 222111 11122456677899999999999999999999997 48999999999999
Q ss_pred ChhHHH
Q 023871 267 QVPLLL 272 (276)
Q Consensus 267 q~~eAI 272 (276)
+..+++
T Consensus 250 k~~~~~ 255 (290)
T PF04733_consen 250 KPTEAA 255 (290)
T ss_dssp -TCHHH
T ss_pred CChhHH
Confidence 995544
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.27 E-value=0.079 Score=53.70 Aligned_cols=51 Identities=20% Similarity=0.226 Sum_probs=41.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 222 GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 222 GnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+..+++.+++.+|++.|.+|+..+|+.. .+++|.|-.|.+.|+.++||..|
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l~P~~~---~l~~~~a~all~~g~~~eai~~L 397 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALALDPNSP---LLQLNLAQALLKGGKPQEAIRIL 397 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCcc---HHHHHHHHHHHhcCChHHHHHHH
Confidence 4444677777777777888888888763 78999999999999999999876
No 136
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.23 E-value=0.024 Score=56.41 Aligned_cols=47 Identities=21% Similarity=0.341 Sum_probs=39.3
Q ss_pred HHHHcCCHHHHHHHHHHHHcC-CCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871 224 QLYRTGKYEVAREKFESVLGS-KPTPEESSVASYNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 224 aLfk~grYeEAI~~Ye~AL~i-~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a 274 (276)
-.|.+|+|++|++.|+-+... +|+. ..+-|.|||+--||++.+|-..
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~~~~~~----el~vnLAcc~FyLg~Y~eA~~~ 113 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNKDDAPA----ELGVNLACCKFYLGQYIEAKSI 113 (557)
T ss_pred HHHhhccHHHHHHHHHHHhccCCCCc----ccchhHHHHHHHHHHHHHHHHH
Confidence 348999999999999999953 3333 5899999999999999998654
No 137
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=95.20 E-value=0.062 Score=52.23 Aligned_cols=69 Identities=23% Similarity=0.358 Sum_probs=45.4
Q ss_pred ceeEEeeeC--CC---CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-ccCceEEEEeec
Q 023871 95 YGLKFAKGR--DG---GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-RVGPLLMKMQKR 168 (276)
Q Consensus 95 LGl~f~e~~--dG---gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-r~gpv~L~l~R~ 168 (276)
+|+.+.... +| ++.|..|.+++.|+++| |++||+|++|... .+=. .....+...++. ...++.|.+.|.
T Consensus 87 iG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~---~v~~-~~~~~~~~~l~g~~g~~v~ltv~r~ 161 (389)
T PLN00049 87 VGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGT---STEG-LSLYEAADRLQGPEGSSVELTLRRG 161 (389)
T ss_pred EEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCE---ECCC-CCHHHHHHHHhcCCCCEEEEEEEEC
Confidence 566665432 22 89999999999999999 9999999998753 2210 011233444543 234678888774
No 138
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.12 E-value=0.13 Score=41.90 Aligned_cols=63 Identities=21% Similarity=0.163 Sum_probs=47.1
Q ss_pred HHHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 210 EQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 210 elkkqae~~~-~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.++.+.-++. .-+..+...|+|++|+...++++.++|-++ .+|.-.-.||..+|+..+|+...
T Consensus 56 ~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E---~~~~~lm~~~~~~g~~~~A~~~Y 119 (146)
T PF03704_consen 56 RLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDE---EAYRLLMRALAAQGRRAEALRVY 119 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H---HHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHCcCHHHHHHHH
Confidence 3444443333 333445789999999999999999999987 58999999999999999998764
No 139
>PRK10139 serine endoprotease; Provisional
Probab=95.10 E-value=0.044 Score=54.56 Aligned_cols=58 Identities=14% Similarity=0.248 Sum_probs=45.4
Q ss_pred CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeecC
Q 023871 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRY 169 (276)
Q Consensus 105 Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~~ 169 (276)
.|++|..|.+++.|+++| +++||+|+.+.. ++...+-..+..|+.+.+++.|.+.|.-
T Consensus 390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing------~~v~~~~~~~~~l~~~~~~v~l~v~R~g 447 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNR------DRVNSIAEMRKVLAAKPAIIALQIVRGN 447 (455)
T ss_pred CceEEEEeCCCChHHHcC-CCCCCEEEEECC------EEcCCHHHHHHHHHhCCCeEEEEEEECC
Confidence 389999999999999999 999999999864 3444444555566655578999998853
No 140
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=95.07 E-value=0.037 Score=52.98 Aligned_cols=57 Identities=19% Similarity=0.304 Sum_probs=42.7
Q ss_pred CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc--ccCceEEEEeec
Q 023871 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ--RVGPLLMKMQKR 168 (276)
Q Consensus 105 Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~--r~gpv~L~l~R~ 168 (276)
.|++|..|.+++.|+++| |++||+|+.+-. ++..+......++.. ..+++.|++.|.
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing------~~V~s~~dl~~~l~~~~~g~~v~l~v~R~ 336 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDG------KDVIGAEELMDRIAETRPGSKVMVTVLRQ 336 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECC------EEcCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence 589999999999999999 999999999854 234444444445543 245688888884
No 141
>KOG3550 consensus Receptor targeting protein Lin-7 [Extracellular structures]
Probab=95.05 E-value=0.059 Score=47.98 Aligned_cols=76 Identities=25% Similarity=0.474 Sum_probs=54.0
Q ss_pred EEEEecCc---ceeEEeee--CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCce
Q 023871 87 YEVEIEQP---YGLKFAKG--RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL 161 (276)
Q Consensus 87 y~V~l~KP---LGl~f~e~--~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv 161 (276)
-.|+|+|- ||..+--+ -+--|||..|-|||-|++-|.++-||+|+.|..+-= ....--.....++.-.|+|
T Consensus 92 rvvelpktdeglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsv----ege~hekavellkaa~gsv 167 (207)
T KOG3550|consen 92 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV----EGEHHEKAVELLKAAVGSV 167 (207)
T ss_pred ceeecCccccccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceee----cchhhHHHHHHHHHhcCcE
Confidence 57888885 55544333 233899999999999999999999999999886411 1112223445667778999
Q ss_pred EEEEe
Q 023871 162 LMKMQ 166 (276)
Q Consensus 162 ~L~l~ 166 (276)
.|++.
T Consensus 168 klvvr 172 (207)
T KOG3550|consen 168 KLVVR 172 (207)
T ss_pred EEEEe
Confidence 88764
No 142
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.00 E-value=0.18 Score=46.26 Aligned_cols=92 Identities=14% Similarity=0.128 Sum_probs=55.3
Q ss_pred HHHHhhcC-CCcchhHHHHHH--HHHhhHHHHHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHcCCCChh----hHHHH
Q 023871 183 IIRAERNS-GVISNRVREIQM--QNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPE----ESSVA 254 (276)
Q Consensus 183 ~~~~~r~~-G~i~~al~Eiq~--~nYkk~Kelkkqae~~-~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~----e~a~A 254 (276)
+.+.-.+. |++++++...+. ..|..-. ......+. .+-|.-+.++|+|++|+..|+++....-+.. .....
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 34444566 888888655555 2233222 12222233 3455555889999999999999997654432 12344
Q ss_pred HHHHhHHHHhcCChhHHHhhh
Q 023871 255 SYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 255 ~YN~AcCyaKLgq~~eAI~aL 275 (276)
+.+...||+..|++..|-.+|
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~ 219 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKAL 219 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 668888999999998887665
No 143
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=94.97 E-value=0.089 Score=49.54 Aligned_cols=85 Identities=14% Similarity=0.162 Sum_probs=58.4
Q ss_pred HHHhhcCCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871 184 IRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS 263 (276)
Q Consensus 184 ~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya 263 (276)
+|+-=..||++.++.++|+.--.+..+ .+-|-..|..|-+.||.++|-.-|.+||++.|+++ ....|++--|.
T Consensus 107 gk~~~~~g~~~~A~~~~rkA~~l~p~d----~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p---~~~nNlgms~~ 179 (257)
T COG5010 107 GKNQIRNGNFGEAVSVLRKAARLAPTD----WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEP---SIANNLGMSLL 179 (257)
T ss_pred HHHHHHhcchHHHHHHHHHHhccCCCC----hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCc---hhhhhHHHHHH
Confidence 455556778888877777622221111 22344778888888888888888888888888876 46777777777
Q ss_pred hcCChhHHHhhh
Q 023871 264 KLNQVPLLLALI 275 (276)
Q Consensus 264 KLgq~~eAI~aL 275 (276)
..|+.+.|...|
T Consensus 180 L~gd~~~A~~ll 191 (257)
T COG5010 180 LRGDLEDAETLL 191 (257)
T ss_pred HcCCHHHHHHHH
Confidence 777777776654
No 144
>PRK10139 serine endoprotease; Provisional
Probab=94.95 E-value=0.053 Score=54.01 Aligned_cols=58 Identities=12% Similarity=0.314 Sum_probs=41.5
Q ss_pred CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-c-cCceEEEEeec
Q 023871 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPLLMKMQKR 168 (276)
Q Consensus 104 dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-r-~gpv~L~l~R~ 168 (276)
..|++|.+|.+++.|+++| |++||+|+.+-.. .+-. +......|.. + ...+.|++.|.
T Consensus 289 ~~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~---~V~s---~~dl~~~l~~~~~g~~v~l~V~R~ 348 (455)
T PRK10139 289 QRGAFVSEVLPNSGSAKAG-VKAGDIITSLNGK---PLNS---FAELRSRIATTEPGTKVKLGLLRN 348 (455)
T ss_pred CCceEEEEECCCChHHHCC-CCCCCEEEEECCE---ECCC---HHHHHHHHHhcCCCCEEEEEEEEC
Confidence 3589999999999999999 9999999998643 3433 3444444443 2 33577778773
No 145
>PLN02789 farnesyltranstransferase
Probab=94.89 E-value=0.081 Score=50.41 Aligned_cols=54 Identities=11% Similarity=-0.119 Sum_probs=34.2
Q ss_pred HHHHHHHHHHcCCH--HHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871 218 DLREGLQLYRTGKY--EVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 218 ~~~eGnaLfk~grY--eEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a 274 (276)
|+.++..+.+.+++ +++++.++++|+++|++. .+|++++-++.+++++++||+.
T Consensus 109 W~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy---~AW~~R~w~l~~l~~~~eeL~~ 164 (320)
T PLN02789 109 WHHRRWLAEKLGPDAANKELEFTRKILSLDAKNY---HAWSHRQWVLRTLGGWEDELEY 164 (320)
T ss_pred hHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhhhHHHHHHH
Confidence 34445555555542 566666666666666664 4677777777777777777664
No 146
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.83 E-value=0.025 Score=55.32 Aligned_cols=54 Identities=28% Similarity=0.389 Sum_probs=47.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a 274 (276)
.++.|--+|+.|+||+|+.+|+.||+.-.-.+ -.-||+|.||..-+|++.|++.
T Consensus 147 ~in~gCllykegqyEaAvqkFqaAlqvsGyqp---llAYniALaHy~~~qyasALk~ 200 (459)
T KOG4340|consen 147 QINLGCLLYKEGQYEAAVQKFQAALQVSGYQP---LLAYNLALAHYSSRQYASALKH 200 (459)
T ss_pred hccchheeeccccHHHHHHHHHHHHhhcCCCc---hhHHHHHHHHHhhhhHHHHHHH
Confidence 36888889999999999999999998766554 4689999999999999999875
No 147
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.74 E-value=0.092 Score=49.19 Aligned_cols=69 Identities=14% Similarity=0.124 Sum_probs=45.7
Q ss_pred HHHhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871 203 QNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 203 ~nYkk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a 274 (276)
.|..|+.+..+.- ..|.-++.-..+.|+-+-|-+.|++||.++|++. ..+-|=..-...+|++++|..-
T Consensus 56 ~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G---dVLNNYG~FLC~qg~~~eA~q~ 125 (250)
T COG3063 56 KNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG---DVLNNYGAFLCAQGRPEEAMQQ 125 (250)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc---chhhhhhHHHHhCCChHHHHHH
Confidence 3333444443332 2345666666777888888888888888888876 3677777777778888877653
No 148
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=94.69 E-value=0.096 Score=50.34 Aligned_cols=52 Identities=15% Similarity=0.136 Sum_probs=45.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 222 GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 222 GnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
+..+...|+|++|+..++..++..|++. .+++-.+-+|..+|+|++|++.|+
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~---~~l~ll~~~~~~~~d~~~a~~~l~ 211 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHK---EVLKLAEEAYIRSGAWQALDDIID 211 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5555678999999999999999999997 578889999999999999988763
No 149
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.68 E-value=0.034 Score=57.83 Aligned_cols=68 Identities=18% Similarity=0.183 Sum_probs=37.0
Q ss_pred HhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 205 YMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 205 Ykk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
|+++-.+..+- +.|+--|....|+++||.|.--|++|++|+|.+. +..+-+...|-++|+.|+|++.+
T Consensus 478 fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns---vi~~~~g~~~~~~k~~d~AL~~~ 546 (638)
T KOG1126|consen 478 FRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS---VILCHIGRIQHQLKRKDKALQLY 546 (638)
T ss_pred HHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccch---hHHhhhhHHHHHhhhhhHHHHHH
Confidence 33333333332 4556666666666666666666666666666652 44444555555555555555544
No 150
>KOG3553 consensus Tax interaction protein TIP1 [Cell wall/membrane/envelope biogenesis]
Probab=94.65 E-value=0.023 Score=47.35 Aligned_cols=31 Identities=29% Similarity=0.673 Sum_probs=28.7
Q ss_pred CCCeEEEEeCCCCCcccccCcccCCEEEEeec
Q 023871 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSA 135 (276)
Q Consensus 104 dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa 135 (276)
|-||||+.|..|+.|+.+| ++.+|+|+-|..
T Consensus 58 D~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG 88 (124)
T KOG3553|consen 58 DKGIYVTRVSEGSPAEIAG-LRIHDKILQVNG 88 (124)
T ss_pred CccEEEEEeccCChhhhhc-ceecceEEEecC
Confidence 5599999999999999999 999999999874
No 151
>PRK10898 serine endoprotease; Provisional
Probab=94.61 E-value=0.074 Score=51.14 Aligned_cols=57 Identities=21% Similarity=0.353 Sum_probs=41.2
Q ss_pred CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-c-cCceEEEEeec
Q 023871 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPLLMKMQKR 168 (276)
Q Consensus 105 Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-r-~gpv~L~l~R~ 168 (276)
.|++|.+|.+++.|+++| |++||+|+.+-.. .+ .+....+..+.. + ...+.|++.|.
T Consensus 279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~---~V---~s~~~l~~~l~~~~~g~~v~l~v~R~ 337 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNK---PA---ISALETMDQVAEIRPGSVIPVVVMRD 337 (353)
T ss_pred CeEEEEEECCCChHHHcC-CCCCCEEEEECCE---Ec---CCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence 599999999999999999 9999999997542 33 333333444442 2 34578888874
No 152
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=94.52 E-value=0.057 Score=58.89 Aligned_cols=51 Identities=33% Similarity=0.654 Sum_probs=42.3
Q ss_pred cceEEEEecCcce----eEEeeeCCC----CeEEEEeCCCCCcccccCcccCCEEEEeec
Q 023871 84 YEEYEVEIEQPYG----LKFAKGRDG----GTYIDAIAPGGSADKTGMFQVGDKVLATSA 135 (276)
Q Consensus 84 ~~~y~V~l~KPLG----l~f~e~~dG----gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa 135 (276)
-+-..|+|.|==| |+-+++ -| ||||..|++||.|+..|.++.||+|+.|-.
T Consensus 932 pei~~vtL~KnnGmGLSIVAAkG-aGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG 990 (1629)
T KOG1892|consen 932 PEIITVTLKKNNGMGLSIVAAKG-AGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDG 990 (1629)
T ss_pred CceEEEEEeccCCceEEEEeecc-CCccccceEEEEeccCCccccccccccCceeeeecC
Confidence 3568999999866 333554 23 999999999999999999999999998865
No 153
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=94.51 E-value=0.067 Score=57.47 Aligned_cols=64 Identities=23% Similarity=0.304 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHh
Q 023871 207 KKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLA 273 (276)
Q Consensus 207 k~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~ 273 (276)
+++++.+....++.+||-||..|++++|+..+..++..+|.+. .+||-++-||-++|+.+.++.
T Consensus 131 ~~~~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~---~ay~tL~~IyEqrGd~eK~l~ 194 (895)
T KOG2076|consen 131 GKSKLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNP---IAYYTLGEIYEQRGDIEKALN 194 (895)
T ss_pred cccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccch---hhHHHHHHHHHHcccHHHHHH
Confidence 3455666677788999999999999999999999999999996 699999999999999998875
No 154
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=94.46 E-value=0.14 Score=54.36 Aligned_cols=88 Identities=22% Similarity=0.381 Sum_probs=63.2
Q ss_pred ccccccceEEEEecC-c--ceeEEeeeCCC--CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHH
Q 023871 79 EQEEKYEEYEVEIEQ-P--YGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYT 153 (276)
Q Consensus 79 ~~~~~~~~y~V~l~K-P--LGl~f~e~~dG--gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~a 153 (276)
.-.++.+-|.|+|+| + .|..+--++.+ ..||-.+.++|-|.+.|.++|||+|+-+..- --.-..-.+.+-.
T Consensus 892 r~~qn~~~~~VelErG~kGFGFSiRGGreynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGe----sTkgmtH~rAIel 967 (984)
T KOG3209|consen 892 RMSQNGDLYTVELERGAKGFGFSIRGGREYNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGE----STKGMTHDRAIEL 967 (984)
T ss_pred cccccCCeeEEEeeccccccceEeecccccccceEEEEeccCCCccccCceeecceEEEecCc----ccCCCcHHHHHHH
Confidence 345667889999986 3 34444444444 8999999999999999999999999987642 1111233366778
Q ss_pred hhcccCceEEEEeecCC
Q 023871 154 IRQRVGPLLMKMQKRYG 170 (276)
Q Consensus 154 ir~r~gpv~L~l~R~~~ 170 (276)
|++...-|.|.|.|..|
T Consensus 968 Ik~gg~~vll~Lr~g~g 984 (984)
T KOG3209|consen 968 IKQGGRRVLLLLRRGTG 984 (984)
T ss_pred HHhCCeEEEEEeccCCC
Confidence 88877677777777543
No 155
>PLN02789 farnesyltranstransferase
Probab=94.43 E-value=0.08 Score=50.44 Aligned_cols=59 Identities=12% Similarity=-0.050 Sum_probs=45.1
Q ss_pred HHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhc
Q 023871 204 NYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL 265 (276)
Q Consensus 204 nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKL 265 (276)
++.++-++..+ ...|..+|..+...|+|++||+.|+++|+++|++. .||+++.-+..++
T Consensus 130 ~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~---sAW~~R~~vl~~~ 189 (320)
T PLN02789 130 FTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN---SAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch---hHHHHHHHHHHhc
Confidence 34444444444 34577888888888999999999999999999885 5899998887776
No 156
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=94.43 E-value=0.1 Score=49.15 Aligned_cols=81 Identities=19% Similarity=0.105 Sum_probs=60.0
Q ss_pred HHhhcCCCcchhHHHHHH-HH-HhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHH
Q 023871 185 RAERNSGVISNRVREIQM-QN-YMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY 262 (276)
Q Consensus 185 ~~~r~~G~i~~al~Eiq~-~n-Ykk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCy 262 (276)
++.+-.|+-+.++.=.+. -. |.+ ..+-....|..++..|+|.+|+..+.+|+.+.|++. .+|.=.+.||
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~~~~~------d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~---~~~~~lgaal 144 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAIAYPK------DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW---EAWNLLGAAL 144 (257)
T ss_pred HHHHhcccccchHHHHhhhhccCcc------cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCCh---hhhhHHHHHH
Confidence 455556666666554444 11 222 222233478899999999999999999999999996 5899999999
Q ss_pred HhcCChhHHHhh
Q 023871 263 SKLNQVPLLLAL 274 (276)
Q Consensus 263 aKLgq~~eAI~a 274 (276)
.++|+.++|-..
T Consensus 145 dq~Gr~~~Ar~a 156 (257)
T COG5010 145 DQLGRFDEARRA 156 (257)
T ss_pred HHccChhHHHHH
Confidence 999999998543
No 157
>PRK10942 serine endoprotease; Provisional
Probab=94.42 E-value=0.083 Score=52.89 Aligned_cols=58 Identities=17% Similarity=0.386 Sum_probs=41.9
Q ss_pred CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc--cCceEEEEeec
Q 023871 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VGPLLMKMQKR 168 (276)
Q Consensus 104 dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r--~gpv~L~l~R~ 168 (276)
..|++|..|.+++.|+++| |+.||+|+.+... +..++.....++... ...+.|.+.|.
T Consensus 310 ~~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~------~V~s~~dl~~~l~~~~~g~~v~l~v~R~ 369 (473)
T PRK10942 310 QRGAFVSQVLPNSSAAKAG-IKAGDVITSLNGK------PISSFAALRAQVGTMPVGSKLTLGLLRD 369 (473)
T ss_pred CCceEEEEECCCChHHHcC-CCCCCEEEEECCE------ECCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence 3599999999999999999 9999999998642 334444444444422 34578888774
No 158
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=94.39 E-value=0.13 Score=50.59 Aligned_cols=71 Identities=23% Similarity=0.259 Sum_probs=52.7
Q ss_pred HHHhhHHHHHHHHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871 203 QNYMKKKEQKERREQ--------DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 203 ~nYkk~Kelkkqae~--------~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a 274 (276)
.+..+++++.+++-+ -+-.|.-....|+|+.|+..++.+++.+|++- ....--...||.++|+.++++.-
T Consensus 194 ~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl--~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 194 SDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL--SEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH--HHHHHHHHHHHHHhCCHHHHHHH
Confidence 334455555554422 36778888899999999999999999999973 23455567899999999998754
Q ss_pred h
Q 023871 275 I 275 (276)
Q Consensus 275 L 275 (276)
|
T Consensus 272 L 272 (389)
T COG2956 272 L 272 (389)
T ss_pred H
Confidence 3
No 159
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.39 E-value=0.22 Score=36.14 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=29.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHH
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVA 254 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A 254 (276)
.+--++..|++|+|++|...-+.+|+++|++.....+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 4567889999999999999999999999999754333
No 160
>PRK14574 hmsH outer membrane protein; Provisional
Probab=94.37 E-value=0.1 Score=55.89 Aligned_cols=52 Identities=12% Similarity=0.119 Sum_probs=44.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 222 GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 222 GnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
|..+..+|+|++|++.|+++|+.+|++++ +++-+|..|..+++.++|++.++
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~---~l~gLa~~y~~~~q~~eAl~~l~ 160 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPD---LISGMIMTQADAGRGGVVLKQAT 160 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHhhcCCHHHHHHHHH
Confidence 44556789999999999999999999964 55677999999999999998753
No 161
>PRK10942 serine endoprotease; Provisional
Probab=94.36 E-value=0.086 Score=52.77 Aligned_cols=59 Identities=17% Similarity=0.357 Sum_probs=45.2
Q ss_pred CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeecCC
Q 023871 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYG 170 (276)
Q Consensus 105 Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~~~ 170 (276)
.+++|.+|.+++.|+++| +++||+|+.+... .+. ++.....+++....++.|.+.|.-.
T Consensus 408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~---~V~---s~~dl~~~l~~~~~~v~l~V~R~g~ 466 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQ---PVK---NIAELRKILDSKPSVLALNIQRGDS 466 (473)
T ss_pred CCeEEEEeCCCChHHHcC-CCCCCEEEEECCE---EcC---CHHHHHHHHHhCCCeEEEEEEECCE
Confidence 389999999999999999 9999999998642 444 4444455555555788999988543
No 162
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=94.33 E-value=0.14 Score=52.12 Aligned_cols=56 Identities=20% Similarity=0.172 Sum_probs=48.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCC-----CChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 220 REGLQLYRTGKYEVAREKFESVLGSK-----PTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 220 ~eGnaLfk~grYeEAI~~Ye~AL~i~-----P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.-|+-+-.+++|.+|+..|++||++- ++++..+..+.|+|-.|.+.|++++|-..+
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~ 306 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYC 306 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHH
Confidence 36778889999999999999999653 666777889999999999999999997765
No 163
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=94.29 E-value=0.34 Score=39.80 Aligned_cols=65 Identities=17% Similarity=0.142 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 212 KERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 212 kkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
..++...+......+..+++..+-..++..+...|+..-...++..+|.++...|++++|+..|+
T Consensus 8 ~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~ 72 (145)
T PF09976_consen 8 AEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALE 72 (145)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33455678889999999999999999999999999986557889999999999999999999874
No 164
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=94.23 E-value=0.56 Score=45.13 Aligned_cols=88 Identities=14% Similarity=0.064 Sum_probs=63.6
Q ss_pred HHHhhcCCCcchhHHHHHH-----------HHH-----hhHHHHHHHHHHH-----------HHHHHHHHHcCCHHHHHH
Q 023871 184 IRAERNSGVISNRVREIQM-----------QNY-----MKKKEQKERREQD-----------LREGLQLYRTGKYEVARE 236 (276)
Q Consensus 184 ~~~~r~~G~i~~al~Eiq~-----------~nY-----kk~Kelkkqae~~-----------~~eGnaLfk~grYeEAI~ 236 (276)
.++-...|+.+++.+.++. ..| .+..+..+..+.| +..|..+.+.++|++|.+
T Consensus 270 A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~ 349 (398)
T PRK10747 270 AEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASL 349 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3455577888888887777 001 1112222222222 456778889999999999
Q ss_pred HHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 237 KFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 237 ~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.|++++++.|++. .+.-.+.++.++|+.++|.++.
T Consensus 350 ~le~al~~~P~~~----~~~~La~~~~~~g~~~~A~~~~ 384 (398)
T PRK10747 350 AFRAALKQRPDAY----DYAWLADALDRLHKPEEAAAMR 384 (398)
T ss_pred HHHHHHhcCCCHH----HHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999985 4667899999999999998764
No 165
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.18 E-value=0.043 Score=33.84 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.8
Q ss_pred HHHHHHhHHHHhcCChhHHHhhhC
Q 023871 253 VASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 253 ~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
.+|++++.||.++|++++|+++++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~ 25 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFE 25 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 579999999999999999998763
No 166
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.16 E-value=0.067 Score=32.66 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=24.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCC
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPT 247 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~ 247 (276)
.+..|..+++.|++++|+..|++++..-|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 467788888888999999999888887776
No 167
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.97 E-value=0.094 Score=47.30 Aligned_cols=49 Identities=24% Similarity=0.220 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHc----------CCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCC
Q 023871 216 EQDLREGLQLYRT----------GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ 267 (276)
Q Consensus 216 e~~~~eGnaLfk~----------grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq 267 (276)
+.+++-|.+|..+ ..|++||.+|++||.|+|+.. .|+||.+.+|+-++.
T Consensus 26 dnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~h---dAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 26 DNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKH---DALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-H---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchH---HHHHHHHHHHHHHHh
Confidence 4456778777433 568999999999999999996 589999988887765
No 168
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.90 E-value=0.17 Score=36.71 Aligned_cols=61 Identities=20% Similarity=0.181 Sum_probs=40.8
Q ss_pred HHHhhcCCCcchhHHHHHHHH--HhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 023871 184 IRAERNSGVISNRVREIQMQN--YMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGS 244 (276)
Q Consensus 184 ~~~~r~~G~i~~al~Eiq~~n--Ykk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i 244 (276)
...-+..|++++|+..+++.- ++.-..-..+ +.-..+-|..+...|+|++|+..|++|+++
T Consensus 12 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 12 ARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345568889999966666521 1111111122 344578899999999999999999999975
No 169
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.83 E-value=0.04 Score=54.08 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=41.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 221 EGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 221 eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.+.+.+..|.+++||+.|++|+.++|... ..|-++|-+|+||.++..||..+
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a---~l~~kr~sv~lkl~kp~~airD~ 171 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLA---ILYAKRASVFLKLKKPNAAIRDC 171 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchh---hhcccccceeeeccCCchhhhhh
Confidence 34556677778999999999999888884 67888888888888888888654
No 170
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=93.79 E-value=0.33 Score=49.56 Aligned_cols=73 Identities=18% Similarity=0.082 Sum_probs=56.7
Q ss_pred HHHhhHHHHHHH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-----CCChhhHHHHHHHHhHHHHhcCCh
Q 023871 203 QNYMKKKEQKER---------REQDLREGLQLYRTGKYEVAREKFESVLGS-----KPTPEESSVASYNVACCYSKLNQV 268 (276)
Q Consensus 203 ~nYkk~Kelkkq---------ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i-----~P~~~e~a~A~YN~AcCyaKLgq~ 268 (276)
..|+++.++.++ +....+.+..+...++|++|+..|.++|++ .+++...+..+.|.|-||.+.|++
T Consensus 304 ~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~ 383 (508)
T KOG1840|consen 304 EYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKY 383 (508)
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcch
Confidence 667777777776 122346777778889999999999999954 234445577899999999999999
Q ss_pred hHHHhhh
Q 023871 269 PLLLALI 275 (276)
Q Consensus 269 ~eAI~aL 275 (276)
++|.+.+
T Consensus 384 ~ea~~~~ 390 (508)
T KOG1840|consen 384 KEAEELY 390 (508)
T ss_pred hHHHHHH
Confidence 9998765
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=93.67 E-value=0.13 Score=52.07 Aligned_cols=52 Identities=12% Similarity=0.031 Sum_probs=44.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 221 EGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 221 eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
.|..+...|+|++|+..|++||+++|+. .+|...+.+|...|+.++|++.++
T Consensus 426 la~~~~~~g~~~~A~~~l~rAl~L~ps~----~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 426 LAVQALVKGKTDEAYQAINKAIDLEMSW----LNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCH----HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444457899999999999999999963 589999999999999999998763
No 172
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=93.66 E-value=0.24 Score=49.00 Aligned_cols=57 Identities=19% Similarity=0.473 Sum_probs=43.8
Q ss_pred CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhccc-CceEEEEeecC
Q 023871 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV-GPLLMKMQKRY 169 (276)
Q Consensus 106 gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~-gpv~L~l~R~~ 169 (276)
++.|.+|.+++.|+++| +++||+|+.+.. ++..++.+....++.+. .++.+.+.|.-
T Consensus 222 ~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing------~~V~s~~dl~~~l~~~~~~~v~l~v~R~g 279 (449)
T PRK10779 222 EPVLAEVQPNSAASKAG-LQAGDRIVKVDG------QPLTQWQTFVTLVRDNPGKPLALEIERQG 279 (449)
T ss_pred CcEEEeeCCCCHHHHcC-CCCCCEEEEECC------EEcCCHHHHHHHHHhCCCCEEEEEEEECC
Confidence 58999999999999999 999999999854 35555555555665443 46788888754
No 173
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=93.65 E-value=0.15 Score=47.40 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=47.0
Q ss_pred ceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-cc-CceEEEEeec
Q 023871 95 YGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-RV-GPLLMKMQKR 168 (276)
Q Consensus 95 LGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-r~-gpv~L~l~R~ 168 (276)
+|+.-....+ -|+.|..+.+++-|++.| |+.||+|+.+-.. +..+....+..+.. +. ..+.|.++|.
T Consensus 179 lgi~p~~~~g~~~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~------~i~~~~~~~~~l~~~~~~~~v~l~V~R~ 249 (259)
T TIGR01713 179 IRLSPVMKNDKLEGYRLNPGKDPSLFYKSG-LQDGDIAVALNGL------DLRDPEQAFQALQMLREETNLTLTVERD 249 (259)
T ss_pred EeEEEEEeCCceeEEEEEecCCCCHHHHcC-CCCCCEEEEECCE------EcCCHHHHHHHHHhcCCCCeEEEEEEEC
Confidence 4555433221 299999999999999999 9999999998753 34444444554453 23 4789999984
No 174
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=93.62 E-value=0.06 Score=56.38 Aligned_cols=43 Identities=33% Similarity=0.695 Sum_probs=40.3
Q ss_pred CcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecc
Q 023871 93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136 (276)
Q Consensus 93 KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~ 136 (276)
+-.||.|+-++|=||||..|-+|+.|++.| |+.||+|+.|.-+
T Consensus 417 dSvGLRLAGGNDVGIFVaGvqegspA~~eG-lqEGDQIL~VN~v 459 (1027)
T KOG3580|consen 417 DSVGLRLAGGNDVGIFVAGVQEGSPAEQEG-LQEGDQILKVNTV 459 (1027)
T ss_pred CeeeeEeccCCceeEEEeecccCCchhhcc-ccccceeEEeccc
Confidence 468999999999999999999999999999 9999999999875
No 175
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=93.52 E-value=0.12 Score=53.13 Aligned_cols=53 Identities=28% Similarity=0.490 Sum_probs=41.1
Q ss_pred ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHH
Q 023871 95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTM 151 (276)
Q Consensus 95 LGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~ 151 (276)
||+++.. ..|+..|..|.+||.|.++| |.+||+|+++... +.-|.-...+..|
T Consensus 453 LGl~v~~-~~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~--s~~l~~~~~~d~i 505 (558)
T COG3975 453 LGLKVKS-EGGHEKITFVFPGGPAYKAG-LSPGDKIVAINGI--SDQLDRYKVNDKI 505 (558)
T ss_pred cceEecc-cCCeeEEEecCCCChhHhcc-CCCccEEEEEcCc--cccccccccccce
Confidence 7888877 57799999999999999999 9999999999875 3334434444333
No 176
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.51 E-value=0.093 Score=51.92 Aligned_cols=80 Identities=13% Similarity=0.182 Sum_probs=63.9
Q ss_pred hHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871 196 RVREIQMQNYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 196 al~Eiq~~nYkk~Kelkkqae~-~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a 274 (276)
.-.|+.+..|+|...+-.+--+ ..+-|+=.+..++|+-++.+|++||.+--++.+.+..|||+..+-.-.|++..|-.+
T Consensus 338 ~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rc 417 (478)
T KOG1129|consen 338 NNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRC 417 (478)
T ss_pred CChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHH
Confidence 3455666889998888777544 458888889999999999999999988777766788999999888888888777665
Q ss_pred h
Q 023871 275 I 275 (276)
Q Consensus 275 L 275 (276)
+
T Consensus 418 f 418 (478)
T KOG1129|consen 418 F 418 (478)
T ss_pred H
Confidence 4
No 177
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.46 E-value=0.16 Score=48.02 Aligned_cols=97 Identities=21% Similarity=0.215 Sum_probs=75.8
Q ss_pred cccchHH--HHHHhhcCCCcchhHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHH
Q 023871 176 GELSEKE--IIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESS 252 (276)
Q Consensus 176 ~~~~e~~--~~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~-~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a 252 (276)
+.|+..| ++--||.-=--+-+|+-....-+.+...+....-+.+ =-|+=+-..|+|+.|++.|+..|++||.+.
T Consensus 57 ~~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~--- 133 (297)
T COG4785 57 RALTDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--- 133 (297)
T ss_pred ccCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch---
Confidence 4566555 4566775555566777777777888888877654444 567888899999999999999999999986
Q ss_pred HHHHHHhHHHHhcCChhHHHhhh
Q 023871 253 VASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 253 ~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.++-|++..+.--|.++.|.+.+
T Consensus 134 Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 134 YAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred HHHhccceeeeecCchHhhHHHH
Confidence 79999999999999988887643
No 178
>PRK11906 transcriptional regulator; Provisional
Probab=93.35 E-value=0.14 Score=51.64 Aligned_cols=54 Identities=17% Similarity=0.030 Sum_probs=47.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
..|..+.-.++++.|+..|++|+.++||.. .+||-.+..+..-|+.++|++.+|
T Consensus 343 ~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A---~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 343 IMGLITGLSGQAKVSHILFEQAKIHSTDIA---SLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHhhcchhhHHHHHHHHhhcCCccH---HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666677889999999999999999995 789999999999999999998764
No 179
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=93.31 E-value=0.19 Score=53.44 Aligned_cols=71 Identities=21% Similarity=0.377 Sum_probs=58.0
Q ss_pred ecCcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeec
Q 023871 91 IEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR 168 (276)
Q Consensus 91 l~KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~ 168 (276)
..-|.||+|.++.+--|-|..|.|..-|+|+. +++||+|+|+-. .|+...-++-..++.-.|+|+.-.+|.
T Consensus 384 ~s~~ig~vf~~~~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~------~pi~s~~q~~~~~~s~~~~~~~l~~~~ 454 (1051)
T KOG3532|consen 384 VSSPIGLVFDKNTNRAVKVCTVEDNSLADKAA-FKPGDVLVAINN------VPIRSERQATRFLQSTTGDLTVLVERS 454 (1051)
T ss_pred ccCceeEEEecCCceEEEEEEecCCChhhHhc-CCCcceEEEecC------ccchhHHHHHHHHHhcccceEEEEeec
Confidence 35699999999877799999999999999998 999999999864 366666666666677788887666663
No 180
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=93.20 E-value=0.16 Score=54.08 Aligned_cols=61 Identities=23% Similarity=0.229 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhh---------------------------------HHHHHHHHhHH
Q 023871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE---------------------------------SSVASYNVACC 261 (276)
Q Consensus 215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e---------------------------------~a~A~YN~AcC 261 (276)
..-++..|..+-..|.++||...|..||.++|++.. -..+||+.+|.
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v 763 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEV 763 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 355788899999999999999999999999999610 15789999999
Q ss_pred HHhcCChhHHHhhh
Q 023871 262 YSKLNQVPLLLALI 275 (276)
Q Consensus 262 yaKLgq~~eAI~aL 275 (276)
+-++|+.++|.+++
T Consensus 764 ~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 764 FKKLGDSKQAAECF 777 (799)
T ss_pred HHHccchHHHHHHH
Confidence 99999999999875
No 181
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.97 E-value=0.056 Score=32.99 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=21.1
Q ss_pred HHHHHhHHHHhcCChhHHHhhhC
Q 023871 254 ASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 254 A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
|+|++|.||.++|++++|++.++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~ 24 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQ 24 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHH
Confidence 79999999999999999998763
No 182
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.81 E-value=0.098 Score=32.49 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.8
Q ss_pred HHHHHHhHHHHhcCChhHHHhhhC
Q 023871 253 VASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 253 ~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
.+|++++.||.++|++++|++.++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~ 25 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFE 25 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 579999999999999999998763
No 183
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.67 E-value=0.15 Score=39.67 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=42.2
Q ss_pred HHHcCCHHHHHHHHHHHHcCCCChh------hHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 225 LYRTGKYEVAREKFESVLGSKPTPE------ESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 225 Lfk~grYeEAI~~Ye~AL~i~P~~~------e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
..+.|+|.+|++...+.++...... ....+..|+|.++...|++++|+..|+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~ 65 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALE 65 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3578999999998888886554332 347889999999999999999998874
No 184
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=92.55 E-value=0.25 Score=48.60 Aligned_cols=58 Identities=12% Similarity=0.267 Sum_probs=43.9
Q ss_pred CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc-cCceEEEEeecC
Q 023871 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR-VGPLLMKMQKRY 169 (276)
Q Consensus 105 Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r-~gpv~L~l~R~~ 169 (276)
-++.|.+|.+++.|+++| +++||+|+.+... +..++.++..+++.. ..++.+.++|.-
T Consensus 203 ~g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~------~V~s~~dl~~~l~~~~~~~v~l~v~R~g 261 (420)
T TIGR00054 203 IEPVLSDVTPNSPAEKAG-LKEGDYIQSINGE------KLRSWTDFVSAVKENPGKSMDIKVERNG 261 (420)
T ss_pred cCcEEEEECCCCHHHHcC-CCCCCEEEEECCE------ECCCHHHHHHHHHhCCCCceEEEEEECC
Confidence 378999999999999999 9999999998642 444555555566543 446888888754
No 185
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.49 E-value=0.13 Score=52.73 Aligned_cols=67 Identities=13% Similarity=0.268 Sum_probs=53.0
Q ss_pred HhhHHHHHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871 205 YMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 205 Ykk~Kelkkqae~-~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a 274 (276)
+.++-.|.++--+ -+.+|.-.|-+++|++|++-|++|+.++|++. .+|-.+||...++++++++..-
T Consensus 383 F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~---~~~iQl~~a~Yr~~k~~~~m~~ 450 (606)
T KOG0547|consen 383 FNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENA---YAYIQLCCALYRQHKIAESMKT 450 (606)
T ss_pred HHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhh---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444322 36889899999999999999999999999994 7888999999999999887654
No 186
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.44 E-value=0.07 Score=54.66 Aligned_cols=54 Identities=17% Similarity=0.251 Sum_probs=46.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.+.||..|-.|+|+.|.+.|..||.-+..- ..|+||+...|-++|++++|+++.
T Consensus 494 ~nkgn~~f~ngd~dka~~~ykeal~ndasc---~ealfniglt~e~~~~ldeald~f 547 (840)
T KOG2003|consen 494 TNKGNIAFANGDLDKAAEFYKEALNNDASC---TEALFNIGLTAEALGNLDEALDCF 547 (840)
T ss_pred hcCCceeeecCcHHHHHHHHHHHHcCchHH---HHHHHHhcccHHHhcCHHHHHHHH
Confidence 467888899999999999999999755444 358999999999999999999874
No 187
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.34 E-value=0.82 Score=45.65 Aligned_cols=87 Identities=16% Similarity=0.166 Sum_probs=64.4
Q ss_pred HHhhcCCCcchhHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHH
Q 023871 185 RAERNSGVISNRVREIQMQNYMKKKEQKERREQ--DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY 262 (276)
Q Consensus 185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkqae~--~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCy 262 (276)
|-+|..|++++|+.-++..- ..+..-+|... .++.|..+.-+.+|++|...|.+-++...-.. +.-.|=.||||
T Consensus 275 R~~~~~g~~~~Ai~~~~~a~--~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSk--a~Y~Y~~a~c~ 350 (468)
T PF10300_consen 275 RLERLKGNLEEAIESFERAI--ESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSK--AFYAYLAAACL 350 (468)
T ss_pred HHHHHhcCHHHHHHHHHHhc--cchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHH--HHHHHHHHHHH
Confidence 66778999999999888633 11122223322 46899999999999999999999998554432 34478899999
Q ss_pred HhcCCh-------hHHHhhh
Q 023871 263 SKLNQV-------PLLLALI 275 (276)
Q Consensus 263 aKLgq~-------~eAI~aL 275 (276)
..+++. ++|.+.+
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~ 370 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELF 370 (468)
T ss_pred HhhccchhhhhhHHHHHHHH
Confidence 999999 7776654
No 188
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=92.07 E-value=1.1 Score=40.80 Aligned_cols=72 Identities=17% Similarity=0.226 Sum_probs=56.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh---hhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871 203 QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTP---EESSVASYNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 203 ~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~---~e~a~A~YN~AcCyaKLgq~~eAI~a 274 (276)
..|++.+..+....-..+-|.++|+.|+|++|+..|+.++..--.+ .-...+.-+..-|+.++|+.+..|..
T Consensus 166 ~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 166 EQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6677777766666667899999999999999999999996442222 22256788889999999999987753
No 189
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.95 E-value=0.52 Score=45.03 Aligned_cols=55 Identities=27% Similarity=0.285 Sum_probs=47.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCChh-------------------------------hHHHHHHHHhHHHHhcCChhH
Q 023871 222 GLQLYRTGKYEVAREKFESVLGSKPTPE-------------------------------ESSVASYNVACCYSKLNQVPL 270 (276)
Q Consensus 222 GnaLfk~grYeEAI~~Ye~AL~i~P~~~-------------------------------e~a~A~YN~AcCyaKLgq~~e 270 (276)
|..|-..|+|++|++.|++.|+-||++. ..+.||.-.|--|.-.|+++.
T Consensus 93 am~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~k 172 (289)
T KOG3060|consen 93 AMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEK 172 (289)
T ss_pred HHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHH
Confidence 4456678999999999999999999871 127789999999999999999
Q ss_pred HHhhhC
Q 023871 271 LLALIE 276 (276)
Q Consensus 271 AI~aLE 276 (276)
|+-|||
T Consensus 173 A~fClE 178 (289)
T KOG3060|consen 173 AAFCLE 178 (289)
T ss_pred HHHHHH
Confidence 998886
No 190
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=91.69 E-value=0.7 Score=47.08 Aligned_cols=55 Identities=20% Similarity=0.127 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a 274 (276)
-++.-|++|++.|++++||..-+..+.-+|+++ ..|+-.|-.|..+|+..+|..+
T Consensus 376 l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp---~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 376 LQLNLAQALLKGGKPQEAIRILNRYLFNDPEDP---NGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc---hHHHHHHHHHHHhCchHHHHHH
Confidence 357999999999999999999999999999986 3566666666666666555543
No 191
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.64 E-value=0.43 Score=45.09 Aligned_cols=57 Identities=23% Similarity=0.291 Sum_probs=42.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
|=-|+.+|..|+|++|...|..+..--|+.+....+++-++.|...++|.++|-..|
T Consensus 182 yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl 238 (262)
T COG1729 182 YWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATL 238 (262)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHH
Confidence 445677777788888888888887777777666677888888888888888776654
No 192
>PRK14574 hmsH outer membrane protein; Provisional
Probab=91.49 E-value=0.41 Score=51.34 Aligned_cols=46 Identities=17% Similarity=0.109 Sum_probs=25.5
Q ss_pred HcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 227 RTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 227 k~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
..|++++|+..+++++ +|++.. ..+.-..|..|..+|+++.|++.+
T Consensus 80 ~~G~~~~A~~~~eka~--~p~n~~-~~~llalA~ly~~~gdyd~Aiely 125 (822)
T PRK14574 80 WAGRDQEVIDVYERYQ--SSMNIS-SRGLASAARAYRNEKRWDQALALW 125 (822)
T ss_pred HcCCcHHHHHHHHHhc--cCCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4455555555555555 222211 134444566777777777777765
No 193
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.41 E-value=0.43 Score=47.89 Aligned_cols=47 Identities=23% Similarity=0.376 Sum_probs=39.2
Q ss_pred HHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 226 YRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 226 fk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
|---.|+|||+.|.++|..+|++. .+--|+|.||.|+.-++-+-+.|
T Consensus 162 YmR~HYQeAIdvYkrvL~dn~ey~---alNVy~ALCyyKlDYydvsqevl 208 (557)
T KOG3785|consen 162 YMRMHYQEAIDVYKRVLQDNPEYI---ALNVYMALCYYKLDYYDVSQEVL 208 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcChhhh---hhHHHHHHHHHhcchhhhHHHHH
Confidence 555789999999999999888874 56789999999999888765543
No 194
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=91.26 E-value=0.29 Score=52.02 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=53.4
Q ss_pred HHhhHHHHHHHHHH-HH-HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 204 NYMKKKEQKERREQ-DL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 204 nYkk~Kelkkqae~-~~-~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.|-|+-|+-++... +. --|+-.+..++|++|...++..|+++|=.. ..||+..||+.++++++.|+++.
T Consensus 472 ~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~---~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 472 LYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQL---GTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccch---hHHHhccHHHHHHhhhHHHHHHH
Confidence 36777777776521 11 112223556999999999999999999886 57999999999999999999863
No 195
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.19 E-value=0.33 Score=45.82 Aligned_cols=58 Identities=17% Similarity=0.260 Sum_probs=54.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.|+-+..|++.|+|.+|...|..=+.-=|+..-...|+|=..-|+..+|++++|...+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f 201 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIF 201 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHH
Confidence 7899999999999999999999999999999877899999999999999999998753
No 196
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.09 E-value=2.4 Score=37.05 Aligned_cols=58 Identities=12% Similarity=0.002 Sum_probs=46.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+.+.|.-+++.|++++|+..|.++.+-+.........+.|+.....-.++|......+
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i 96 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYI 96 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3577777889999999999999999888777666667788888888888887765543
No 197
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.00 E-value=0.44 Score=30.17 Aligned_cols=27 Identities=26% Similarity=0.165 Sum_probs=22.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGS 244 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i 244 (276)
+.+-|+.++..|+|++|+..|++|+++
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 457788899999999999999999964
No 198
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.96 E-value=0.4 Score=47.89 Aligned_cols=57 Identities=19% Similarity=0.182 Sum_probs=48.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH-HHHHHHHhHHHHhcCChhHHHhhh
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEES-SVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~-a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+.+|.-+...|+.++||+.|++|+....+-... ..++|.++.||.-+.+|++|.+..
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 467777888999999999999999766655544 778999999999999999998764
No 199
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=90.84 E-value=0.42 Score=48.56 Aligned_cols=68 Identities=12% Similarity=0.060 Sum_probs=47.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHH
Q 023871 203 QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLL 272 (276)
Q Consensus 203 ~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI 272 (276)
..|.|+-+++.-....+..|..+...|++++|++.|++|+.++|.++.+ .|+--..-|+.++.++-++
T Consensus 441 ~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~--~~~~~~~f~~~~~~~~~~~ 508 (517)
T PRK10153 441 QAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL--YWIENLVFQTSVETVVPYL 508 (517)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH--HHHHhccccccHHHHHHHH
Confidence 5566777777655555677888888999999999999999999998742 2222223444444444433
No 200
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=90.74 E-value=0.6 Score=49.88 Aligned_cols=81 Identities=25% Similarity=0.484 Sum_probs=58.8
Q ss_pred ccceEEEEe-cCcceeEEee-eCC--C-CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccc--hhHHHHhh
Q 023871 83 KYEEYEVEI-EQPYGLKFAK-GRD--G-GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY--GRTMYTIR 155 (276)
Q Consensus 83 ~~~~y~V~l-~KPLGl~f~e-~~d--G-gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~--g~~~~air 155 (276)
+..+..|.| .||.|.-|-- +.| | -|||-.|.++|.|++.|.++.||.|+.|-.. |+.+- -.|+..+.
T Consensus 647 pdk~ldV~L~rkesGFGFRiLGG~ep~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~------pV~GksH~~vv~Lm~ 720 (984)
T KOG3209|consen 647 PDKELDVFLRRKESGFGFRILGGDEPGQPIYIGAIVPLGAAEEDGRLREGDELVCIDGI------PVEGKSHSEVVDLME 720 (984)
T ss_pred CccceeEEEEeeccccceEEecCCCCCCeeEEeeeeecccccccCcccCCCeEEEecCe------eccCccHHHHHHHHH
Confidence 336677776 5788876643 223 3 8999999999999999999999999998763 22221 23444444
Q ss_pred --cccCceEEEEeecC
Q 023871 156 --QRVGPLLMKMQKRY 169 (276)
Q Consensus 156 --~r~gpv~L~l~R~~ 169 (276)
.|+|-|.|.+.|+.
T Consensus 721 ~AArnghV~LtVRRkv 736 (984)
T KOG3209|consen 721 AAARNGHVNLTVRRKV 736 (984)
T ss_pred HHHhcCceEEEEeeee
Confidence 67999999998863
No 201
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.72 E-value=0.2 Score=32.53 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=19.7
Q ss_pred HHHHHhHHHHhcCChhHHHhhhC
Q 023871 254 ASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 254 A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
+|.|+|.+|.++|+|++|++.+|
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~ 23 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYE 23 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHH
Confidence 58999999999999999998753
No 202
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.71 E-value=0.15 Score=52.29 Aligned_cols=70 Identities=19% Similarity=0.306 Sum_probs=52.7
Q ss_pred cchhHHHHHH-----HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCC
Q 023871 193 ISNRVREIQM-----QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ 267 (276)
Q Consensus 193 i~~al~Eiq~-----~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq 267 (276)
++++++..|| +.-.|-+.+|.. .+-|.++.+.|+|++||..|+-.++..||- .+-||.-.||.-.|+
T Consensus 253 fskaikfyrmaldqvpsink~~rikil----~nigvtfiq~gqy~dainsfdh~m~~~pn~----~a~~nl~i~~f~i~d 324 (840)
T KOG2003|consen 253 FSKAIKFYRMALDQVPSINKDMRIKIL----NNIGVTFIQAGQYDDAINSFDHCMEEAPNF----IAALNLIICAFAIGD 324 (840)
T ss_pred HHHHHHHHHHHHhhccccchhhHHHHH----hhcCeeEEecccchhhHhhHHHHHHhCccH----HhhhhhhhhheecCc
Confidence 3455555555 333333333333 378889999999999999999999999998 578999999998887
Q ss_pred hhH
Q 023871 268 VPL 270 (276)
Q Consensus 268 ~~e 270 (276)
.+.
T Consensus 325 ~ek 327 (840)
T KOG2003|consen 325 AEK 327 (840)
T ss_pred HHH
Confidence 654
No 203
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=90.29 E-value=0.28 Score=48.26 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=39.3
Q ss_pred CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEee
Q 023871 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQK 167 (276)
Q Consensus 105 Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R 167 (276)
-+++|.+|.|++.|+++| +++||+|+.+-.. .+=..+++. ..|....+++.+.+.|
T Consensus 128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~---~v~~~~dl~---~~ia~~~~~v~~~I~r 183 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGN---KIPGFKDVR---QQIADIAGEPMVEILA 183 (420)
T ss_pred CCceeeccCCCCHHHHcC-CCCCCEEEEECCE---EcCCHHHHH---HHHHhhcccceEEEEE
Confidence 478899999999999999 9999999998653 222223333 2333223777777766
No 204
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=90.12 E-value=0.41 Score=50.44 Aligned_cols=76 Identities=20% Similarity=0.328 Sum_probs=61.6
Q ss_pred cCcceeEEeeeCC--------C-CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceE
Q 023871 92 EQPYGLKFAKGRD--------G-GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL 162 (276)
Q Consensus 92 ~KPLGl~f~e~~d--------G-gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~ 162 (276)
++|.++.|-..++ | .|||.+|...|=|++.|.|+.||+|+.+..+.-..| .+-.+...|...-|.+.
T Consensus 197 ~~p~kv~LvKsR~nEEyGlrLgSqIFvKeit~~gLAardgnlqEGDiiLkINGtvteNm----SLtDar~LIEkS~GKL~ 272 (1027)
T KOG3580|consen 197 PGPIKVLLVKSRANEEYGLRLGSQIFVKEITRTGLAARDGNLQEGDIILKINGTVTENM----SLTDARKLIEKSRGKLQ 272 (1027)
T ss_pred CCcceEEEEeeccchhhcccccchhhhhhhcccchhhccCCcccccEEEEECcEeeccc----cchhHHHHHHhccCceE
Confidence 4677877766543 2 799999999999999999999999999887654433 45556888888899999
Q ss_pred EEEeecCCC
Q 023871 163 MKMQKRYGK 171 (276)
Q Consensus 163 L~l~R~~~~ 171 (276)
|.+.|--+.
T Consensus 273 lvVlRD~~q 281 (1027)
T KOG3580|consen 273 LVVLRDSQQ 281 (1027)
T ss_pred EEEEecCCc
Confidence 999997766
No 205
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=90.02 E-value=0.36 Score=47.74 Aligned_cols=56 Identities=11% Similarity=0.204 Sum_probs=39.4
Q ss_pred CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc--cCceEEEEeec
Q 023871 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VGPLLMKMQKR 168 (276)
Q Consensus 106 gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r--~gpv~L~l~R~ 168 (276)
..+|.+|.|++-|+++| +++||+|+.+-.. +.++..+....+..+ ...+.+++.|.
T Consensus 127 ~~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~------~V~~~~~l~~~v~~~~~g~~v~v~v~R~ 184 (449)
T PRK10779 127 RPVVGEIAPNSIAAQAQ-IAPGTELKAVDGI------ETPDWDAVRLALVSKIGDESTTITVAPF 184 (449)
T ss_pred CccccccCCCCHHHHcC-CCCCCEEEEECCE------EcCCHHHHHHHHHhhccCCceEEEEEeC
Confidence 45799999999999999 9999999998653 444444333333322 23577777774
No 206
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=90.00 E-value=0.89 Score=46.43 Aligned_cols=52 Identities=17% Similarity=0.152 Sum_probs=44.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 222 GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 222 GnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
+.-+-..|+|++|+...++||+..|...+ .|+-+|.+|-..|++++|.+.+|
T Consensus 201 Aqhyd~~g~~~~Al~~Id~aI~htPt~~e---ly~~KarilKh~G~~~~Aa~~~~ 252 (517)
T PF12569_consen 201 AQHYDYLGDYEKALEYIDKAIEHTPTLVE---LYMTKARILKHAGDLKEAAEAMD 252 (517)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHHCCCHHHHHHHHH
Confidence 44445789999999999999999999864 79999999999999999998764
No 207
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=89.89 E-value=0.16 Score=55.13 Aligned_cols=54 Identities=26% Similarity=0.393 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
--|.-|...|++.+|++.|.++-+.=-+. ...|-|+|.||.-+|||-.||+..|
T Consensus 651 GIgiVLA~kg~~~~A~dIFsqVrEa~~~~---~dv~lNlah~~~e~~qy~~AIqmYe 704 (1018)
T KOG2002|consen 651 GIGIVLAEKGRFSEARDIFSQVREATSDF---EDVWLNLAHCYVEQGQYRLAIQMYE 704 (1018)
T ss_pred chhhhhhhccCchHHHHHHHHHHHHHhhC---CceeeeHHHHHHHHHHHHHHHHHHH
Confidence 34555667777777777777776322111 2468999999999999999998653
No 208
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=89.88 E-value=0.2 Score=53.27 Aligned_cols=48 Identities=25% Similarity=0.641 Sum_probs=39.5
Q ss_pred EEEEecC-----cceeEEeee-CCC-CeEEEEeCCCCCcccccCcccCCEEEEeec
Q 023871 87 YEVEIEQ-----PYGLKFAKG-RDG-GTYIDAIAPGGSADKTGMFQVGDKVLATSA 135 (276)
Q Consensus 87 y~V~l~K-----PLGl~f~e~-~dG-gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa 135 (276)
-+|.|.| ||-+.+--+ ..| ||||++|.||..|+..| ++-||++.-|..
T Consensus 537 RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pgskAa~~G-lKRgDqilEVNg 591 (1283)
T KOG3542|consen 537 RQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREG-LKRGDQILEVNG 591 (1283)
T ss_pred eeEEEecccccCCceeEeccCccccceeEEeeecCCchHHHhh-hhhhhhhhhccc
Confidence 4666766 666676655 567 99999999999999999 999999998764
No 209
>KOG3605 consensus Beta amyloid precursor-binding protein [General function prediction only]
Probab=89.85 E-value=0.16 Score=53.41 Aligned_cols=58 Identities=22% Similarity=0.424 Sum_probs=46.0
Q ss_pred ccccccceEEEEecC----cceeEEeeeCCC----CeEEEEeCCCCCcccccCcccCCEEEEeecc
Q 023871 79 EQEEKYEEYEVEIEQ----PYGLKFAKGRDG----GTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136 (276)
Q Consensus 79 ~~~~~~~~y~V~l~K----PLGl~f~e~~dG----gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~ 136 (276)
-|.+.-+.-+|-|+| +||+++-|+.=| -|+|+-+..+|.|+++|++.+||+|+++..+
T Consensus 639 ~FakkE~qKEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~ 704 (829)
T KOG3605|consen 639 HFAKKENQKEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGT 704 (829)
T ss_pred HhhhhcccceeeeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCc
Confidence 344444555666766 788888886444 7889999999999999999999999998764
No 210
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=89.24 E-value=1.1 Score=46.01 Aligned_cols=82 Identities=15% Similarity=0.053 Sum_probs=48.3
Q ss_pred cCCCcchhHHHHHHH---HHh--hHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHH
Q 023871 189 NSGVISNRVREIQMQ---NYM--KKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY 262 (276)
Q Consensus 189 ~~G~i~~al~Eiq~~---nYk--k~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCy 262 (276)
+.+-+++.|-=-+.+ .|. ..-++.|-+ |.+.--||=.--.++-|.|+..|.+||.++|+.. .+|-=+..=|
T Consensus 298 dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~---~aWTLmGHEy 374 (559)
T KOG1155|consen 298 DMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYL---SAWTLMGHEY 374 (559)
T ss_pred hHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchh---HHHHHhhHHH
Confidence 555566666544441 222 233444444 4455667766666788899999999999999873 3444444444
Q ss_pred HhcCChhHHHh
Q 023871 263 SKLNQVPLLLA 273 (276)
Q Consensus 263 aKLgq~~eAI~ 273 (276)
.-+.+...||+
T Consensus 375 vEmKNt~AAi~ 385 (559)
T KOG1155|consen 375 VEMKNTHAAIE 385 (559)
T ss_pred HHhcccHHHHH
Confidence 44444444444
No 211
>KOG3129 consensus 26S proteasome regulatory complex, subunit PSMD9 [Posttranslational modification, protein turnover, chaperones]
Probab=89.02 E-value=0.49 Score=43.88 Aligned_cols=32 Identities=34% Similarity=0.633 Sum_probs=28.2
Q ss_pred CeEEEEeCCCCCcccccCcccCCEEEEeecccC
Q 023871 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFG 138 (276)
Q Consensus 106 gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fG 138 (276)
-++|.+|+|++-|+++| +++||.|+-+..+-+
T Consensus 140 Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV~s 171 (231)
T KOG3129|consen 140 FAVVDSVVPGSPADEAG-LCVGDEILKFGNVHS 171 (231)
T ss_pred eEEEeecCCCChhhhhC-cccCceEEEeccccc
Confidence 68899999999999999 999999999666533
No 212
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=88.78 E-value=0.74 Score=47.86 Aligned_cols=92 Identities=16% Similarity=0.104 Sum_probs=69.0
Q ss_pred HHHhh-cCCCcc----hhHHHHHHHHHhhHHHHHHHHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHcCCCC---
Q 023871 184 IRAER-NSGVIS----NRVREIQMQNYMKKKEQKERREQ--------DLREGLQLYRTGKYEVAREKFESVLGSKPT--- 247 (276)
Q Consensus 184 ~~~~r-~~G~i~----~al~Eiq~~nYkk~Kelkkqae~--------~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~--- 247 (276)
.+|-| =.|.+. -+++..|+.|++.+.+--.|+-. .++.|.-.|+.+.|.+|+.+|..+|+.-++
T Consensus 370 ~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~ 449 (611)
T KOG1173|consen 370 FTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN 449 (611)
T ss_pred HHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc
Confidence 35566 344443 46677788888888887777632 268899999999999999999999943332
Q ss_pred -hhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 248 -PEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 248 -~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
...-...+-|++..|-|++++++||..+
T Consensus 450 e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 450 EKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred cccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 2212567999999999999999999864
No 213
>PRK10941 hypothetical protein; Provisional
Probab=88.65 E-value=0.86 Score=42.81 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=32.5
Q ss_pred HHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 225 LYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 225 Lfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
+.+.++|+.|+.+-+..|.+.|+++ .-+--++-+|.++|.+..|+..||
T Consensus 191 ~~~~~~~~~AL~~~e~ll~l~P~dp---~e~RDRGll~~qL~c~~~A~~DL~ 239 (269)
T PRK10941 191 LMEEKQMELALRASEALLQFDPEDP---YEIRDRGLIYAQLDCEHVALSDLS 239 (269)
T ss_pred HHHcCcHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCcHHHHHHHH
Confidence 3566777777777777777777764 235556667777777777766654
No 214
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=88.51 E-value=0.95 Score=35.14 Aligned_cols=32 Identities=19% Similarity=0.141 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023871 212 KERREQDLREGLQLYRTGKYEVAREKFESVLG 243 (276)
Q Consensus 212 kkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~ 243 (276)
..++-+...+|.++-+.|+|++||..|..|++
T Consensus 3 e~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 3 ERDAVQFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34445566888999999999999999999984
No 215
>KOG3606 consensus Cell polarity protein PAR6 [Signal transduction mechanisms]
Probab=88.49 E-value=1.2 Score=42.96 Aligned_cols=69 Identities=26% Similarity=0.522 Sum_probs=47.6
Q ss_pred ecCcceeEEeeeC------C-----CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccC
Q 023871 91 IEQPYGLKFAKGR------D-----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG 159 (276)
Q Consensus 91 l~KPLGl~f~e~~------d-----Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~g 159 (276)
-+||||.-+-.+. . .||||..++|||=|+.+|.+.|-|.|+-|..+ ||- -..+.||-.++-.-+-
T Consensus 169 ~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGI---EVa-GKTLDQVTDMMvANsh 244 (358)
T KOG3606|consen 169 SEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGI---EVA-GKTLDQVTDMMVANSH 244 (358)
T ss_pred CCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCE---Eec-cccHHHHHHHHhhccc
Confidence 3799997664431 2 39999999999999999999999999998764 221 2344555444443344
Q ss_pred ceEE
Q 023871 160 PLLM 163 (276)
Q Consensus 160 pv~L 163 (276)
.+-+
T Consensus 245 NLIi 248 (358)
T KOG3606|consen 245 NLII 248 (358)
T ss_pred ceEE
Confidence 4433
No 216
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=88.29 E-value=1.3 Score=42.39 Aligned_cols=43 Identities=16% Similarity=-0.022 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 230 KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 230 rYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.-.+|...|++||.+||++. .+.|-.|.-+...|++.+|+...
T Consensus 208 ~ta~a~~ll~~al~~D~~~i---ral~lLA~~afe~g~~~~A~~~W 250 (287)
T COG4235 208 MTAKARALLRQALALDPANI---RALSLLAFAAFEQGDYAEAAAAW 250 (287)
T ss_pred ccHHHHHHHHHHHhcCCccH---HHHHHHHHHHHHcccHHHHHHHH
Confidence 44555666666666666664 67888999999999999998754
No 217
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=87.65 E-value=3.4 Score=30.80 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=19.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVL 242 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL 242 (276)
.+..|++.-+.|+|++|+..|.+|+
T Consensus 11 li~~Av~~d~~g~~~eAl~~Y~~a~ 35 (77)
T smart00745 11 LISKALKADEAGDYEEALELYKKAI 35 (77)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456677777899999998888876
No 218
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=87.51 E-value=1.8 Score=31.86 Aligned_cols=27 Identities=19% Similarity=0.404 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023871 217 QDLREGLQLYRTGKYEVAREKFESVLG 243 (276)
Q Consensus 217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~ 243 (276)
..+.+|..+-+.|+|++|+..|.+|++
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345778888899999999999999873
No 219
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=87.26 E-value=2.3 Score=36.82 Aligned_cols=74 Identities=15% Similarity=0.131 Sum_probs=54.5
Q ss_pred HHHHhhHHHHHHHH--HHHHH-H----------HHHHHHcCCHHHHHHHHHHHH-------cCCCChhhH-HHHHHHHhH
Q 023871 202 MQNYMKKKEQKERR--EQDLR-E----------GLQLYRTGKYEVAREKFESVL-------GSKPTPEES-SVASYNVAC 260 (276)
Q Consensus 202 ~~nYkk~Kelkkqa--e~~~~-e----------GnaLfk~grYeEAI~~Ye~AL-------~i~P~~~e~-a~A~YN~Ac 260 (276)
.+.|+++++.-... +++++ . .-++..+|+|++||.+-+.|| ++.-+.... ..+-+|+|.
T Consensus 29 a~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~ 108 (144)
T PF12968_consen 29 AASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAV 108 (144)
T ss_dssp HHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHH
Confidence 48899999987763 44432 1 234568999999999999999 666776655 677899999
Q ss_pred HHHhcCChhHHHhhh
Q 023871 261 CYSKLNQVPLLLALI 275 (276)
Q Consensus 261 CyaKLgq~~eAI~aL 275 (276)
..--+|..++|+..+
T Consensus 109 Al~~~Gr~~eA~~~f 123 (144)
T PF12968_consen 109 ALEGLGRKEEALKEF 123 (144)
T ss_dssp HHHHTT-HHHHHHHH
T ss_pred HHHhcCChHHHHHHH
Confidence 999999999998764
No 220
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=87.26 E-value=0.47 Score=26.28 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.8
Q ss_pred HHHHHHhHHHHhcCChhHHHhhh
Q 023871 253 VASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 253 ~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.+|++++-||..++++++|+..+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~ 24 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYY 24 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHH
Confidence 47899999999999999999865
No 221
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=87.15 E-value=1.4 Score=45.03 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=48.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH-HHHHHHHhHHHHhcCChhHHHh
Q 023871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEES-SVASYNVACCYSKLNQVPLLLA 273 (276)
Q Consensus 220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~-a~A~YN~AcCyaKLgq~~eAI~ 273 (276)
.+|..|++.|+|+..++.|+.||+.-.++-.. +.+|+...-.|..|++|+.|++
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~ 76 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALK 76 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHh
Confidence 78999999999999999999999988887554 7789999999999999999985
No 222
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=87.01 E-value=2.2 Score=40.32 Aligned_cols=74 Identities=18% Similarity=0.288 Sum_probs=58.4
Q ss_pred HHHhhcCCCcchhHHHHHH---HH----HhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHH
Q 023871 184 IRAERNSGVISNRVREIQM---QN----YMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASY 256 (276)
Q Consensus 184 ~~~~r~~G~i~~al~Eiq~---~n----Ykk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~Y 256 (276)
.-.+=+.||+++|.+++.. ++ |. .+.+ +.-+-+.|+.++|++|+...++=|.+-|+.++...++|
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~----~qa~----l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYS----EQAQ----LDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCccc----HHHH----HHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 4445588899999887766 11 32 1222 37788899999999999999999999999999999999
Q ss_pred HHhHHHHhc
Q 023871 257 NVACCYSKL 265 (276)
Q Consensus 257 N~AcCyaKL 265 (276)
=++.||...
T Consensus 113 lkgLs~~~~ 121 (254)
T COG4105 113 LKGLSYFFQ 121 (254)
T ss_pred HHHHHHhcc
Confidence 999987653
No 223
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.94 E-value=0.61 Score=29.47 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.5
Q ss_pred HHHHHHHhHHHHhcCChhHHHhhh
Q 023871 252 SVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 252 a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+.++.|+|.+|..+|++++|+..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~ 25 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELL 25 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHH
Confidence 467999999999999999999865
No 224
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=86.90 E-value=1.2 Score=34.70 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-------CCCChh
Q 023871 213 ERREQDLREGLQLYRTGKYEVAREKFESVLG-------SKPTPE 249 (276)
Q Consensus 213 kqae~~~~eGnaLfk~grYeEAI~~Ye~AL~-------i~P~~~ 249 (276)
..+.....++.++-+.|+|++||.+|+.|++ ..||+.
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~ 47 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSP 47 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChH
Confidence 3344456788899999999999999998873 467764
No 225
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.81 E-value=1.9 Score=45.68 Aligned_cols=158 Identities=18% Similarity=0.166 Sum_probs=100.7
Q ss_pred cccccCcccCCEEEEeecc------cCCcceecccchhHHHHhh--cccCceEEE----------------------Eee
Q 023871 118 ADKTGMFQVGDKVLATSAV------FGTEIWPAAEYGRTMYTIR--QRVGPLLMK----------------------MQK 167 (276)
Q Consensus 118 A~k~G~i~vGD~l~~~Sa~------fGdevw~a~~~g~~~~air--~r~gpv~L~----------------------l~R 167 (276)
+-++| +=|||.+++++++ .|+++.....+.++||.+. .+-.-+||. |.|
T Consensus 522 ~v~tg-~WvgD~fiytts~nrlnY~vgGe~~~v~h~~~~mylLgy~~~~~rvYL~Dke~nVi~y~l~l~vleyqt~vmrr 600 (794)
T KOG0276|consen 522 SVKTG-KWVGDCFIYTTSNNRLNYLVGGETYTVAHLDRIMYLLGYVANDNRVYLHDKELNVISYKILLEVLEYQTLVLRR 600 (794)
T ss_pred heeec-eeeeeEEEEeecccceeEEcCCceEEEEEeccchhheeeeecCCEEEEeecccceEeEeeehHHHHHHHHhhhc
Confidence 34566 7799999999995 7899999999999999988 555556663 223
Q ss_pred cCCCcccccccchHHH-HHHhh---cCCCcchhHHHH-----------HHHHHhhHHHHHHHH---HHHHHHHHHHHHcC
Q 023871 168 RYGKMEQTGELSEKEI-IRAER---NSGVISNRVREI-----------QMQNYMKKKEQKERR---EQDLREGLQLYRTG 229 (276)
Q Consensus 168 ~~~~~~~~~~~~e~~~-~~~~r---~~G~i~~al~Ei-----------q~~nYkk~Kelkkqa---e~~~~eGnaLfk~g 229 (276)
-+...+....-=+|++ -|.-| ..|-.+++|.=- |...|+-+.+|..++ ..|.+-|....+.+
T Consensus 601 d~~~a~~vLp~I~k~~rt~va~Fle~~g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la~e~~s~~Kw~~Lg~~al~~~ 680 (794)
T KOG0276|consen 601 DLEVADGVLPTIPKEIRTKVAHFLESQGMKEQALELSTDPDQRFELALKLGRLDIAFDLAVEANSEVKWRQLGDAALSAG 680 (794)
T ss_pred cccccccccccCchhhhhhHHhHhhhccchHhhhhcCCChhhhhhhhhhcCcHHHHHHHHHhhcchHHHHHHHHHHhhcc
Confidence 2222211111112221 22222 455555554311 113355555554444 23778888889999
Q ss_pred CHHHHHHHHHHHHcCC--------CChhh---------HHHHHHHHh-HHHHhcCChhHHHhhhC
Q 023871 230 KYEVAREKFESVLGSK--------PTPEE---------SSVASYNVA-CCYSKLNQVPLLLALIE 276 (276)
Q Consensus 230 rYeEAI~~Ye~AL~i~--------P~~~e---------~a~A~YN~A-cCyaKLgq~~eAI~aLE 276 (276)
++.-|-++|.+|-+.- -.+.+ ......|.| .||.++|+++++++.|+
T Consensus 681 ~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 681 ELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred cchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHH
Confidence 9999999999986543 22222 133377877 59999999999999874
No 226
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=86.47 E-value=2.8 Score=33.41 Aligned_cols=69 Identities=26% Similarity=0.459 Sum_probs=41.4
Q ss_pred ceeEEeeeCCCCeEEEEeCCCCCcc--------ccc-CcccCCEEEEeecccCCcceecccchhHHHHhhcccC-ceEEE
Q 023871 95 YGLKFAKGRDGGTYIDAIAPGGSAD--------KTG-MFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG-PLLMK 164 (276)
Q Consensus 95 LGl~f~e~~dGgv~V~~v~~ggnA~--------k~G-~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~g-pv~L~ 164 (276)
||..|.-. +|+.-|..|-+|-+-. +.| .|++||.|++|-.. +|=+..++... +..+.| .|.|.
T Consensus 3 LGAd~~~~-~~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~---~v~~~~~~~~l---L~~~agk~V~Lt 75 (88)
T PF14685_consen 3 LGADFSYD-NGGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQ---PVTADANPYRL---LEGKAGKQVLLT 75 (88)
T ss_dssp -SEEEEEE-TTEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTE---E-BTTB-HHHH---HHTTTTSEEEEE
T ss_pred cceEEEEc-CCEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCE---ECCCCCCHHHH---hcccCCCEEEEE
Confidence 78888887 6888899998874433 344 57899999998753 55555554433 344444 78999
Q ss_pred EeecCC
Q 023871 165 MQKRYG 170 (276)
Q Consensus 165 l~R~~~ 170 (276)
+.++.+
T Consensus 76 v~~~~~ 81 (88)
T PF14685_consen 76 VNRKPG 81 (88)
T ss_dssp EE-STT
T ss_pred EecCCC
Confidence 999776
No 227
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=86.43 E-value=1.1 Score=47.23 Aligned_cols=50 Identities=12% Similarity=-0.004 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhH
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPL 270 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~e 270 (276)
|+.-|+-.-..++|+|||.+|..||.++||+. .+|+-.|.-.+++++++-
T Consensus 78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~---qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL---QILRDLSLLQIQMRDYEG 127 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHHHhhhh
Confidence 56667766788999999999999999999984 345555555555555443
No 228
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=86.27 E-value=3.1 Score=45.47 Aligned_cols=66 Identities=8% Similarity=-0.035 Sum_probs=52.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871 205 YMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 205 Ykk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a 274 (276)
|++..+.-.+....+..|..+-++|++++|++.|+++|.++|++. .+.-|.|--|+.. +.+.|++.
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~---~aLNn~AY~~ae~-dL~KA~~m 171 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNP---EIVKKLATSYEEE-DKEKAITY 171 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHh-hHHHHHHH
Confidence 333333333333456777778899999999999999999999996 5899999999999 99999864
No 229
>PRK04841 transcriptional regulator MalT; Provisional
Probab=86.17 E-value=3.4 Score=42.95 Aligned_cols=56 Identities=11% Similarity=-0.054 Sum_probs=35.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCCh-----hhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 220 REGLQLYRTGKYEVAREKFESVLGSKPTP-----EESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~-----~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
..|..++..|++++|...+++++++.... .....++.+.|.++..+|++++|...+
T Consensus 536 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 596 (903)
T PRK04841 536 QQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCA 596 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 44566677788888888888887542211 111234566777777777777776544
No 230
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=86.16 E-value=1.8 Score=44.28 Aligned_cols=72 Identities=22% Similarity=0.345 Sum_probs=55.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh-----------hhH----HHHHHHHhHHHHhcCC
Q 023871 203 QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTP-----------EES----SVASYNVACCYSKLNQ 267 (276)
Q Consensus 203 ~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~-----------~e~----a~A~YN~AcCyaKLgq 267 (276)
+|+.-.-.+.+-.+-++.+|-..|+++.|-.|+..|..||++|-+. .++ +-.--.+..||+++++
T Consensus 164 ~~~s~~PqiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rk 243 (569)
T PF15015_consen 164 PNFSFLPQIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRK 243 (569)
T ss_pred CCcccChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCC
Confidence 3444555666777777899999999999999999999999988543 233 2234567899999999
Q ss_pred hhHHHhh
Q 023871 268 VPLLLAL 274 (276)
Q Consensus 268 ~~eAI~a 274 (276)
.+.|+..
T Consensus 244 pdlALnh 250 (569)
T PF15015_consen 244 PDLALNH 250 (569)
T ss_pred CchHHHH
Confidence 9999864
No 231
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=86.11 E-value=1.1 Score=42.46 Aligned_cols=58 Identities=28% Similarity=0.516 Sum_probs=42.8
Q ss_pred CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhh-cccC-ceEEEEeecCCC
Q 023871 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR-QRVG-PLLMKMQKRYGK 171 (276)
Q Consensus 106 gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air-~r~g-pv~L~l~R~~~~ 171 (276)
|++|..|.+++.|+++| ++.||+|+.+.. +++......+..+. .+.| .+.+++.|. |+
T Consensus 271 G~~V~~v~~~spa~~ag-i~~Gdii~~vng------~~v~~~~~l~~~v~~~~~g~~v~~~~~r~-g~ 330 (347)
T COG0265 271 GAVVLGVLPGSPAAKAG-IKAGDIITAVNG------KPVASLSDLVAAVASNRPGDEVALKLLRG-GK 330 (347)
T ss_pred ceEEEecCCCChHHHcC-CCCCCEEEEECC------EEccCHHHHHHHHhccCCCCEEEEEEEEC-CE
Confidence 59999999999999999 999999999875 23334443344333 2233 679999997 54
No 232
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.04 E-value=0.94 Score=43.59 Aligned_cols=76 Identities=22% Similarity=0.372 Sum_probs=57.4
Q ss_pred EEecCcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccch--hHHHHhhcccCceEEEEe
Q 023871 89 VEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYG--RTMYTIRQRVGPLLMKMQ 166 (276)
Q Consensus 89 V~l~KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g--~~~~air~r~gpv~L~l~ 166 (276)
|.-.+-|||.+..+.-|++||..|.+|+=-++-..|+|||.|-++.. ..|.--+-|. +.+.-| .|..+++|+|-
T Consensus 133 ~KsedalGlTITDNG~GyAFIKrIkegsvidri~~i~VGd~IEaiNg---e~ivG~RHYeVArmLKel-~rge~ftlrLi 208 (334)
T KOG3938|consen 133 VKSEDALGLTITDNGAGYAFIKRIKEGSVIDRIEAICVGDHIEAING---ESIVGKRHYEVARMLKEL-PRGETFTLRLI 208 (334)
T ss_pred EecccccceEEeeCCcceeeeEeecCCchhhhhhheeHHhHHHhhcC---ccccchhHHHHHHHHHhc-ccCCeeEEEee
Confidence 34456799999998899999999999999998889999999988763 3444444443 344333 45788899886
Q ss_pred ec
Q 023871 167 KR 168 (276)
Q Consensus 167 R~ 168 (276)
-|
T Consensus 209 eP 210 (334)
T KOG3938|consen 209 EP 210 (334)
T ss_pred cc
Confidence 65
No 233
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=85.92 E-value=8.5 Score=28.88 Aligned_cols=29 Identities=45% Similarity=0.584 Sum_probs=14.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCCh
Q 023871 220 REGLQLYRTGKYEVAREKFESVLGSKPTP 248 (276)
Q Consensus 220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~ 248 (276)
..|......++|++|+..+.+++...++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (291)
T COG0457 100 NLGLLLEALGKYEEALELLEKALALDPDP 128 (291)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHcCCCCc
Confidence 44444445555555555555555544443
No 234
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=85.61 E-value=2.1 Score=41.22 Aligned_cols=51 Identities=14% Similarity=0.184 Sum_probs=41.1
Q ss_pred HHHHHHHHcCCHHHHHHHHH--HHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871 220 REGLQLYRTGKYEVAREKFE--SVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 220 ~eGnaLfk~grYeEAI~~Ye--~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a 274 (276)
.-|--+++.|+|++|...|+ .+++..|++.. +...+..+.++|+.++|.+.
T Consensus 340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~----~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 340 ALGQLLMKHGEFIEAADAFKNVAACKEQLDAND----LAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH----HHHHHHHHHHcCCHHHHHHH
Confidence 34666689999999999999 67788998853 44669999999999988764
No 235
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=85.58 E-value=4 Score=31.51 Aligned_cols=33 Identities=12% Similarity=0.274 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-------cCCCChh
Q 023871 217 QDLREGLQLYRTGKYEVAREKFESVL-------GSKPTPE 249 (276)
Q Consensus 217 ~~~~eGnaLfk~grYeEAI~~Ye~AL-------~i~P~~~ 249 (276)
+.+.+|+++-+.|+|++||.+|.+|| ..+||+.
T Consensus 8 ~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~ 47 (77)
T cd02683 8 EVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEA 47 (77)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHH
Confidence 44577888889999999999988887 3467653
No 236
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=85.46 E-value=1.8 Score=29.02 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH--HHHcCCCCh
Q 023871 216 EQDLREGLQLYRTGKYEVAREKFE--SVLGSKPTP 248 (276)
Q Consensus 216 e~~~~eGnaLfk~grYeEAI~~Ye--~AL~i~P~~ 248 (276)
+.|+.-|-.++..|+|++|+..|. -+..++|+|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 456677888899999999999954 666777654
No 237
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=85.35 E-value=7.2 Score=33.87 Aligned_cols=58 Identities=12% Similarity=0.119 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHc----CCCChh-----hHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLG----SKPTPE-----ESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~----i~P~~~-----e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
++-+|....+.|-|++|-..|.+|++ |.|+.. ..+-+|--.+-.+.+||.+++++.+-
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA 78 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSA 78 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 34667777799999999999999994 445432 12667888899999999999998763
No 238
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=85.26 E-value=2 Score=40.37 Aligned_cols=45 Identities=22% Similarity=0.186 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 229 GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 229 grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
..|++|+-.|+...+..|... ..+.-+|+|+..+|+|++|.+.|+
T Consensus 181 e~~~~A~y~f~El~~~~~~t~---~~lng~A~~~l~~~~~~eAe~~L~ 225 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTP---KLLNGLAVCHLQLGHYEEAEELLE 225 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SH---HHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCH---HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 379999999999777666554 567789999999999999998773
No 239
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=85.22 E-value=1.3 Score=45.37 Aligned_cols=87 Identities=11% Similarity=0.057 Sum_probs=65.7
Q ss_pred cCCCcchhHHHHHH--HHHhhHHHHHHHH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH---HHHHH
Q 023871 189 NSGVISNRVREIQM--QNYMKKKEQKERR-------EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES---SVASY 256 (276)
Q Consensus 189 ~~G~i~~al~Eiq~--~nYkk~Kelkkqa-------e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~---a~A~Y 256 (276)
|.||-.-=+-+|.- ++||+.-.|-.+. ..+|--||+++-.++|+.||+.+.+-|.|.-+-.+. ..+.|
T Consensus 240 NlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Racw 319 (639)
T KOG1130|consen 240 NLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACW 319 (639)
T ss_pred ccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 66665544444443 8899877665543 235788999999999999999999999776554332 67788
Q ss_pred HHhHHHHhcCChhHHHhhh
Q 023871 257 NVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 257 N~AcCyaKLgq~~eAI~aL 275 (276)
-.+..|..+|+.+.|+.-+
T Consensus 320 SLgna~~alg~h~kAl~fa 338 (639)
T KOG1130|consen 320 SLGNAFNALGEHRKALYFA 338 (639)
T ss_pred HHHHHHHhhhhHHHHHHHH
Confidence 8999999999999998654
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.20 E-value=2 Score=41.58 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.++.+.++.++...|++.+|...|..||+..|++. .+..-.|.||...|+.++|-..|
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~---~~~~~la~~~l~~g~~e~A~~iL 191 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENS---EAKLLLAECLLAAGDVEAAQAIL 191 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccc---hHHHHHHHHHHHcCChHHHHHHH
Confidence 34567999999999999999999999999999995 46777899999999999887665
No 241
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=84.86 E-value=1 Score=45.66 Aligned_cols=53 Identities=8% Similarity=0.040 Sum_probs=42.4
Q ss_pred hhcCCCcchhHHHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 023871 187 ERNSGVISNRVREIQMQNYMKKKEQKERRE----QDLREGLQLYRTGKYEVAREKFESVLGS 244 (276)
Q Consensus 187 ~r~~G~i~~al~Eiq~~nYkk~Kelkkqae----~~~~eGnaLfk~grYeEAI~~Ye~AL~i 244 (276)
-...|++++++ ..|.++.+++..-. .+++.|..+.++|++++|++.|++||++
T Consensus 85 L~~lGryeEAI-----a~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 85 LFSKGRVKDAL-----AQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHcCCHHHHH-----HHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34678888884 55666667666632 3789999999999999999999999987
No 242
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=84.63 E-value=6.7 Score=36.09 Aligned_cols=62 Identities=16% Similarity=0.034 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCC----C------ChhhH-HHHHHHHhHHHHhcCChhHHHhh
Q 023871 213 ERREQDLREGLQLYRTG-KYEVAREKFESVLGSK----P------TPEES-SVASYNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 213 kqae~~~~eGnaLfk~g-rYeEAI~~Ye~AL~i~----P------~~~e~-a~A~YN~AcCyaKLgq~~eAI~a 274 (276)
.-.+-.++-|..+++.+ +|++|+.+.++|+++. + +..+. ...+.-+|.||...+..+....+
T Consensus 33 ~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka 106 (278)
T PF08631_consen 33 ELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKA 106 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 34455689999999999 9999999999999873 1 12222 67788999999998887654443
No 243
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=84.09 E-value=4.8 Score=30.23 Aligned_cols=53 Identities=30% Similarity=0.322 Sum_probs=34.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a 274 (276)
..+..+...+++++|+..+.+++...|+. ....+++.+.+|...++++.|+..
T Consensus 172 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~ 224 (291)
T COG0457 172 ALGALLEALGRYEEALELLEKALKLNPDD--DAEALLNLGLLYLKLGKYEEALEY 224 (291)
T ss_pred HhhhHHHHhcCHHHHHHHHHHHHhhCccc--chHHHHHhhHHHHHcccHHHHHHH
Confidence 33344556677777777777777666662 124677777777777777766654
No 244
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=83.64 E-value=6.3 Score=29.38 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023871 217 QDLREGLQLYRTGKYEVAREKFESVLG 243 (276)
Q Consensus 217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~ 243 (276)
..+..|...-+.|+|++|+..|..|++
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344667788888999999999998873
No 245
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=83.62 E-value=1.8 Score=34.11 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTP 248 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~ 248 (276)
.+.-|..+...|+|++|++.+-.++..+|++
T Consensus 25 r~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 25 RYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 3566666666677777777666666666655
No 246
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=83.54 E-value=8 Score=28.72 Aligned_cols=58 Identities=21% Similarity=0.295 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCC-hhhH--HHHHHHHhHHHHhcCChhHHHhhh
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPT-PEES--SVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~-~~e~--a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.+..|..||+.|+|=||-+..|.+-...|. .... ..++.-.|.-|.+.|+.+-|...|
T Consensus 2 ~~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 2 ALEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 568999999999999999999999955443 3333 334555566677888888887643
No 247
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=83.45 E-value=1.9 Score=43.11 Aligned_cols=67 Identities=15% Similarity=0.320 Sum_probs=41.3
Q ss_pred cceeEEeeeCCCCeEEEEeCC--------CCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEE
Q 023871 94 PYGLKFAKGRDGGTYIDAIAP--------GGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKM 165 (276)
Q Consensus 94 PLGl~f~e~~dGgv~V~~v~~--------ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l 165 (276)
|.||.+. .-||+|..... ++.|+++| |++||+|+.+-. ..+...+++-..+... ...++.|.+
T Consensus 97 ~iGI~l~---t~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING---~~V~s~~DL~~iL~~~--~g~~V~LtV 167 (402)
T TIGR02860 97 SIGVKLN---TKGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKING---EKIKNMDDLANLINKA--GGEKLTLTI 167 (402)
T ss_pred EEEEEEe---cCEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECC---EECCCHHHHHHHHHhC--CCCeEEEEE
Confidence 5566654 33666655432 35577778 999999999864 3454445544444333 245788888
Q ss_pred eecC
Q 023871 166 QKRY 169 (276)
Q Consensus 166 ~R~~ 169 (276)
.|.-
T Consensus 168 ~R~G 171 (402)
T TIGR02860 168 ERGG 171 (402)
T ss_pred EECC
Confidence 7743
No 248
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.16 E-value=7.8 Score=37.42 Aligned_cols=90 Identities=17% Similarity=0.185 Sum_probs=59.7
Q ss_pred HHHHhhcCCCcchhHHHHHH----HHHhhHHHHHHHH----HHHH--HHHHHHH----HcCCHHHHHHHHHHHHc-CCCC
Q 023871 183 IIRAERNSGVISNRVREIQM----QNYMKKKEQKERR----EQDL--REGLQLY----RTGKYEVAREKFESVLG-SKPT 247 (276)
Q Consensus 183 ~~~~~r~~G~i~~al~Eiq~----~nYkk~Kelkkqa----e~~~--~eGnaLf----k~grYeEAI~~Ye~AL~-i~P~ 247 (276)
.+|+.|..+++|...-.+|. .-..-+++.-++. +++. +-+.++- ..+.+++|.=.|+.-=+ ..|+
T Consensus 127 Al~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T 206 (299)
T KOG3081|consen 127 ALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPT 206 (299)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCC
Confidence 58888888888888766665 2222222222221 2322 3444442 23679999999998886 6666
Q ss_pred hhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 248 PEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 248 ~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
. ...--+||||..+++|++|...|+
T Consensus 207 ~----~llnG~Av~~l~~~~~eeAe~lL~ 231 (299)
T KOG3081|consen 207 P----LLLNGQAVCHLQLGRYEEAESLLE 231 (299)
T ss_pred h----HHHccHHHHHHHhcCHHHHHHHHH
Confidence 6 467789999999999999987764
No 249
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=83.13 E-value=1.5 Score=44.23 Aligned_cols=35 Identities=29% Similarity=0.573 Sum_probs=27.2
Q ss_pred EEEeCCCCCcccccCcccCCEEEEeecccCCcceecccc
Q 023871 109 IDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY 147 (276)
Q Consensus 109 V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~ 147 (276)
|..|.|++-|+++| |++||+|+++-. ..+.+..+|
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsING---~~V~Dw~D~ 36 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSING---VAPRDLIDY 36 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEECC---EECCCHHHH
Confidence 56789999999999 999999999864 344443343
No 250
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=83.06 E-value=2.4 Score=46.97 Aligned_cols=81 Identities=16% Similarity=0.103 Sum_probs=64.1
Q ss_pred cCCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCCh
Q 023871 189 NSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV 268 (276)
Q Consensus 189 ~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~ 268 (276)
+.++.+.++-|||..-.--.| .-+-|.--|.+.-..|+|.-|+..|++|..++|..- .+.|-+|.--.-+|++
T Consensus 574 ea~n~h~aV~~fQsALR~dPk----D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~---y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTDPK----DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK---YGRFKEAVMECDNGKY 646 (1238)
T ss_pred CccchhhHHHHHHHHhcCCch----hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH---HHHHHHHHHHHHhhhH
Confidence 567777777777774333332 234577888888899999999999999999999984 6789999999999999
Q ss_pred hHHHhhhC
Q 023871 269 PLLLALIE 276 (276)
Q Consensus 269 ~eAI~aLE 276 (276)
++|++.|+
T Consensus 647 keald~l~ 654 (1238)
T KOG1127|consen 647 KEALDALG 654 (1238)
T ss_pred HHHHHHHH
Confidence 99998774
No 251
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=82.83 E-value=7.7 Score=34.42 Aligned_cols=82 Identities=13% Similarity=0.049 Sum_probs=62.9
Q ss_pred cCCCcchhHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCCh-hhHHHHHHHHhHHHHhcC
Q 023871 189 NSGVISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTP-EESSVASYNVACCYSKLN 266 (276)
Q Consensus 189 ~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~-~eGnaLfk~grYeEAI~~Ye~AL~i~P~~-~e~a~A~YN~AcCyaKLg 266 (276)
..|+.+.++.-| .++-.+-.++-.++ +++.++-=.|+-++|++-.++||++..+- ...-.+|..++.-|-++|
T Consensus 55 E~g~Ld~AlE~F-----~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 55 EAGDLDGALELF-----GQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred hccchHHHHHHH-----HHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 468888886554 45667776665655 77888878899999999999999876443 333667999999999999
Q ss_pred ChhHHHhhh
Q 023871 267 QVPLLLALI 275 (276)
Q Consensus 267 q~~eAI~aL 275 (276)
+-+.|-...
T Consensus 130 ~dd~AR~DF 138 (175)
T KOG4555|consen 130 NDDAARADF 138 (175)
T ss_pred chHHHHHhH
Confidence 998886543
No 252
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=82.67 E-value=5.2 Score=41.06 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=32.3
Q ss_pred HHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 225 LYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 225 Lfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+.+.|++++|...|++..+ ||. ..|..+..+|++.|++++|++.+
T Consensus 370 y~k~G~~~~A~~vf~~m~~--~d~----~t~n~lI~~y~~~G~~~~A~~lf 414 (697)
T PLN03081 370 YSKWGRMEDARNVFDRMPR--KNL----ISWNALIAGYGNHGRGTKAVEMF 414 (697)
T ss_pred HHHCCCHHHHHHHHHhCCC--CCe----eeHHHHHHHHHHcCCHHHHHHHH
Confidence 3567888888888887653 443 46777778888888888887765
No 253
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=82.62 E-value=1.1 Score=47.83 Aligned_cols=51 Identities=24% Similarity=0.376 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh-hHHHHHHHHhHHHHhcCC
Q 023871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPE-ESSVASYNVACCYSKLNQ 267 (276)
Q Consensus 217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~-e~a~A~YN~AcCyaKLgq 267 (276)
+++.+||.+|+.++|++|.-.|..++.+-|.+. ..+..+.|++.||++++-
T Consensus 55 ~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l 106 (748)
T KOG4151|consen 55 ELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGL 106 (748)
T ss_pred HHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCc
Confidence 455889999999999999999999999988654 448889999999987653
No 254
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=82.47 E-value=5.9 Score=33.44 Aligned_cols=35 Identities=40% Similarity=0.550 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH
Q 023871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES 251 (276)
Q Consensus 217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~ 251 (276)
+-++.|..|...|++++|+..|-.||.++|+..+.
T Consensus 65 ~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~L 99 (121)
T PF02064_consen 65 QQVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAEL 99 (121)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHH
Confidence 34588999999999999999999999999998653
No 255
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=82.35 E-value=7.3 Score=29.40 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023871 215 REQDLREGLQLYRTGKYEVAREKFESVLG 243 (276)
Q Consensus 215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~ 243 (276)
+-..+.+|...-+.|+|++|+..|.+|++
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456778888899999999999999874
No 256
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=81.97 E-value=3.6 Score=31.51 Aligned_cols=29 Identities=14% Similarity=0.059 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023871 215 REQDLREGLQLYRTGKYEVAREKFESVLG 243 (276)
Q Consensus 215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~ 243 (276)
+-+.+.+|++.-+.|+|++|+.+|.+||+
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34556778888999999999999999884
No 257
>KOG3552 consensus FERM domain protein FRM-8 [General function prediction only]
Probab=81.83 E-value=3.2 Score=45.83 Aligned_cols=74 Identities=20% Similarity=0.320 Sum_probs=60.5
Q ss_pred EEEEecCcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEe
Q 023871 87 YEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQ 166 (276)
Q Consensus 87 y~V~l~KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~ 166 (276)
.+.+..--||.-|-.+ --|.|..|.+||.+. |++.+||+|+++. +|=..+.--.+|+..+|.--..|.|.+-
T Consensus 59 vq~~r~~~lGFgfvag--rPviVr~VT~GGps~--GKL~PGDQIl~vN----~Epv~daprervIdlvRace~sv~ltV~ 130 (1298)
T KOG3552|consen 59 VQLQRNASLGFGFVAG--RPVIVRFVTEGGPSI--GKLQPGDQILAVN----GEPVKDAPRERVIDLVRACESSVNLTVC 130 (1298)
T ss_pred hhhhccccccceeecC--CceEEEEecCCCCcc--ccccCCCeEEEec----CcccccccHHHHHHHHHHHhhhcceEEe
Confidence 4556666788888776 679999999999976 8999999999965 4666666667899999977788999888
Q ss_pred ec
Q 023871 167 KR 168 (276)
Q Consensus 167 R~ 168 (276)
++
T Consensus 131 qP 132 (1298)
T KOG3552|consen 131 QP 132 (1298)
T ss_pred cc
Confidence 86
No 258
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=81.42 E-value=2.4 Score=43.55 Aligned_cols=48 Identities=13% Similarity=0.085 Sum_probs=38.9
Q ss_pred HHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 225 LYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 225 Lfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
....|+++.|...+++.++++|++.. .|.-+.-+|++.|+|++|.+.+
T Consensus 504 ~~~~g~~~~a~~~~~~l~~~~p~~~~---~y~~L~~~y~~~G~~~~A~~v~ 551 (697)
T PLN03081 504 CRIHKNLELGRLAAEKLYGMGPEKLN---NYVVLLNLYNSSGRQAEAAKVV 551 (697)
T ss_pred HHHcCCcHHHHHHHHHHhCCCCCCCc---chHHHHHHHHhCCCHHHHHHHH
Confidence 35779999999999999999998753 3445556899999999998765
No 259
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=81.32 E-value=1.4 Score=28.63 Aligned_cols=32 Identities=25% Similarity=0.179 Sum_probs=26.4
Q ss_pred HhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHH
Q 023871 205 YMKKKEQKER-REQDLREGLQLYRTGKYEVARE 236 (276)
Q Consensus 205 Ykk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~ 236 (276)
|+|+-++... .+.+++-|+.+...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 6777777776 3667899999999999999973
No 260
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=81.23 E-value=3.2 Score=41.21 Aligned_cols=52 Identities=21% Similarity=0.201 Sum_probs=46.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a 274 (276)
+++-+.+..|+|..||.--.+||.++|.+- .|+|--|-|+..|+.+++|+.-
T Consensus 124 NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~---Ka~~R~Akc~~eLe~~~~a~nw 175 (390)
T KOG0551|consen 124 NRAAAQLYLGNYRSALNDCSAALKLKPTHL---KAYIRGAKCLLELERFAEAVNW 175 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcchh---hhhhhhhHHHHHHHHHHHHHHH
Confidence 666677889999999999999999999995 7999999999999998888753
No 261
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=80.96 E-value=2.4 Score=32.97 Aligned_cols=29 Identities=14% Similarity=0.094 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 023871 216 EQDLREGLQLYRTGKYEVAREKFESVLGS 244 (276)
Q Consensus 216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i 244 (276)
-..+..|+..-+.|+|++|+..|..||+.
T Consensus 7 i~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 7 HFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 34456778888999999999999999954
No 262
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=80.20 E-value=44 Score=31.99 Aligned_cols=133 Identities=14% Similarity=0.153 Sum_probs=83.5
Q ss_pred cceecccch-------hHHHHhhcc--cCceEEEEeecCCCccccccc-chHHHHHHhhcCCCcchhHHHHHHH------
Q 023871 140 EIWPAAEYG-------RTMYTIRQR--VGPLLMKMQKRYGKMEQTGEL-SEKEIIRAERNSGVISNRVREIQMQ------ 203 (276)
Q Consensus 140 evw~a~~~g-------~~~~air~r--~gpv~L~l~R~~~~~~~~~~~-~e~~~~~~~r~~G~i~~al~Eiq~~------ 203 (276)
=+|+..+=- ++++-+|.- .++.-|--+++.=.+.-++++ .+...|.+++..|..-...-++++.
T Consensus 49 llWe~~~~~~Ar~nLR~~l~~lRk~l~~~~~il~t~~~~~~L~~~~~~~iD~~~F~~~~~a~~~~~~~~~~~~~~~~~~~ 128 (280)
T COG3629 49 LLWEDSDPSRARANLRTTLHNLRKLLGDGDVILATEGPGVTLNPGADITIDAGRFEAEARAGLKARAGLRFEQAGELLSE 128 (280)
T ss_pred hccCCCChhHHHHHHHHHHHHHHHhcCCcceeeecCCCceEecCccceeecHHHHHHhHhcccchhhhHHHHHHHHHhhc
Confidence 478754422 345545522 355555555543334444554 6666777777666655555444441
Q ss_pred --------HHhhHHHHHHHHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhH
Q 023871 204 --------NYMKKKEQKERREQD-----LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPL 270 (276)
Q Consensus 204 --------nYkk~Kelkkqae~~-----~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~e 270 (276)
++.=.-++....+++ .+.+.++...|+++.++...++-+..+|-++ .+|+-.=..|.+-|....
T Consensus 129 g~~~~d~~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E---~~~~~lm~~y~~~g~~~~ 205 (280)
T COG3629 129 GPVLGDDRFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDE---PAYLRLMEAYLVNGRQSA 205 (280)
T ss_pred CCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccch---HHHHHHHHHHHHcCCchH
Confidence 222223333333333 2344455778999999999999999999986 578888888999999999
Q ss_pred HHhhh
Q 023871 271 LLALI 275 (276)
Q Consensus 271 AI~aL 275 (276)
||..+
T Consensus 206 ai~~y 210 (280)
T COG3629 206 AIRAY 210 (280)
T ss_pred HHHHH
Confidence 98875
No 263
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.08 E-value=2.5 Score=38.26 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=32.6
Q ss_pred HHHhhHHHHHHHHHH-HHHHHHHHHHcC-----------CHHHHHHHHHHHHcCCCChhh
Q 023871 203 QNYMKKKEQKERREQ-DLREGLQLYRTG-----------KYEVAREKFESVLGSKPTPEE 250 (276)
Q Consensus 203 ~nYkk~Kelkkqae~-~~~eGnaLfk~g-----------rYeEAI~~Ye~AL~i~P~~~e 250 (276)
.-|..+-.++...-+ .+.-||++...+ -|+.|..+|++|.+.+|++..
T Consensus 56 sK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 56 SKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp HHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 446666666666533 468888886443 389999999999999999963
No 264
>KOG3651 consensus Protein kinase C, alpha binding protein [Signal transduction mechanisms]
Probab=80.07 E-value=6.9 Score=38.54 Aligned_cols=77 Identities=17% Similarity=0.228 Sum_probs=54.2
Q ss_pred ceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeecCCCc
Q 023871 95 YGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKM 172 (276)
Q Consensus 95 LGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~~~~~ 172 (276)
.||.+.-+.- .-+||+.|-.+..|++.|.|+.||.|++|.++ .|- -..--.|-.+|..--++|.+..-+--++.
T Consensus 18 iGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~---svK-GktKveVAkmIQ~~~~eV~IhyNKL~adp 93 (429)
T KOG3651|consen 18 IGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGI---SVK-GKTKVEVAKMIQVSLNEVKIHYNKLEADP 93 (429)
T ss_pred eeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecce---eec-CccHHHHHHHHHHhccceEEEehhcccCc
Confidence 4666543311 16899999999999999999999999999864 110 01111456688888999999877666655
Q ss_pred ccc
Q 023871 173 EQT 175 (276)
Q Consensus 173 ~~~ 175 (276)
..+
T Consensus 94 ~qG 96 (429)
T KOG3651|consen 94 TQG 96 (429)
T ss_pred ccC
Confidence 443
No 265
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=79.57 E-value=0.64 Score=45.90 Aligned_cols=143 Identities=22% Similarity=0.351 Sum_probs=76.7
Q ss_pred cccccceEEEEecCcceeEEeee---CCC-CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhh
Q 023871 80 QEEKYEEYEVEIEQPYGLKFAKG---RDG-GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR 155 (276)
Q Consensus 80 ~~~~~~~y~V~l~KPLGl~f~e~---~dG-gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air 155 (276)
+.-.-|-|++.=+||.=|..+-. .+| .-||+.+ |-++=+ | =.| |||. |..-..+=+.|--+.
T Consensus 94 ~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~-p~PHLd--G-----kHV-----VFGq-VI~G~~VVr~IEn~~ 159 (372)
T KOG0546|consen 94 EKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTV-PTPHLD--G-----KHV-----VFGQ-VIKGKEVVREIENLE 159 (372)
T ss_pred cccccccceeccCcchhhhhhcCCCCCCCcceEEeCC-CCCCcC--C-----cee-----EEee-EeechhHHHHHhccc
Confidence 44556778999999987777653 456 5555544 334422 2 222 3552 222111112232222
Q ss_pred --cccCceEEEEeecCCCcccccccchH----HHHHHhh---cCCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 023871 156 --QRVGPLLMKMQKRYGKMEQTGELSEK----EIIRAER---NSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLY 226 (276)
Q Consensus 156 --~r~gpv~L~l~R~~~~~~~~~~~~e~----~~~~~~r---~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLf 226 (276)
..+-|+.-+.-..- |+|.++ +.+.++. ..+.++...+.-+.--++.-.+..+..+.-.+.|+..|
T Consensus 160 ~d~~skP~~dV~I~dC------Gel~~~~~~~~~~~a~~~~~sgd~~~d~p~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 233 (372)
T KOG0546|consen 160 TDEESKPLADVVISDC------GELVKKSKVKEDAGASEPDETGDSYEDYPKDDRSWDDKDFDKALEREEKKKNIGNKEF 233 (372)
T ss_pred cccCCCCccceEeccc------ccccccccccccccCCCCCCCCCcccccccccccccccccchhhhhhhhhhccchhhh
Confidence 22334444443333 444444 4455554 33344444434344333333333333444458999999
Q ss_pred HcCCHHHHHHHHHHHH
Q 023871 227 RTGKYEVAREKFESVL 242 (276)
Q Consensus 227 k~grYeEAI~~Ye~AL 242 (276)
+.++|++|+..|.+++
T Consensus 234 kk~~~~~a~~k~~k~~ 249 (372)
T KOG0546|consen 234 KKQRYREALAKYRKAL 249 (372)
T ss_pred hhccHhHHHHHHHHHh
Confidence 9999999999999999
No 266
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=79.37 E-value=0.85 Score=46.39 Aligned_cols=71 Identities=15% Similarity=0.017 Sum_probs=57.9
Q ss_pred HHHhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 203 QNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 203 ~nYkk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
-.|.|+-+++.-- .=+=+++.+..+.++|.+|+.-+.+|++++|.+. .+||-+|..+.+++++.+|+..||
T Consensus 25 dlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~---K~Y~rrg~a~m~l~~~~~A~~~l~ 96 (476)
T KOG0376|consen 25 DLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYI---KAYVRRGTAVMALGEFKKALLDLE 96 (476)
T ss_pred HHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhh---heeeeccHHHHhHHHHHHHHHHHH
Confidence 5677776666622 1122777888999999999999999999999884 799999999999999999998875
No 267
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=78.72 E-value=8.8 Score=39.33 Aligned_cols=68 Identities=10% Similarity=0.181 Sum_probs=46.2
Q ss_pred hcCCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHH
Q 023871 188 RNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY 262 (276)
Q Consensus 188 r~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCy 262 (276)
...|+++++|.+.... .+.+--+..-.-.+|.-+.++|++++|...|..-|+.+|++..| |....+|.
T Consensus 15 ~e~g~~~~AL~~L~~~----~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Y---y~~L~~~~ 82 (517)
T PF12569_consen 15 EEAGDYEEALEHLEKN----EKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDY---YRGLEEAL 82 (517)
T ss_pred HHCCCHHHHHHHHHhh----hhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH---HHHHHHHH
Confidence 4789999999998651 11111111111245677899999999999999999999999654 33444444
No 268
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.71 E-value=7 Score=36.03 Aligned_cols=57 Identities=9% Similarity=0.100 Sum_probs=42.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
..+-+.+..+++++|+.....+|...-|..--..+-.++|.+...++++|+|+..|+
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~ 150 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLD 150 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 455566778888888888888886444333236778888888888888888888774
No 269
>PLN03077 Protein ECB2; Provisional
Probab=78.54 E-value=4.4 Score=42.60 Aligned_cols=53 Identities=21% Similarity=0.152 Sum_probs=30.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH--cCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVL--GSKPTPEESSVASYNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL--~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a 274 (276)
|-.-...+.+.|++++|+..|++.+ .+.||.. .+..+-.+|++.|.+++|++.
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~----T~~~ll~a~~~~g~v~ea~~~ 611 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV----TFISLLCACSRSGMVTQGLEY 611 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc----cHHHHHHHHhhcChHHHHHHH
Confidence 3344455567788888888888776 4567753 222223344445555555543
No 270
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.51 E-value=1.7 Score=42.28 Aligned_cols=51 Identities=24% Similarity=0.307 Sum_probs=44.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 223 LQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 223 naLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
.-+-..++|-+|...|++.+..||.++ .+--|+|.|..-+|+..+||.-+|
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~---~a~NnKALcllYlg~l~DAiK~~e 310 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNA---VANNNKALCLLYLGKLKDALKQLE 310 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCch---hhhchHHHHHHHHHHHHHHHHHHH
Confidence 333567999999999999999999996 678899999999999999998765
No 271
>PLN03218 maturation of RBCL 1; Provisional
Probab=77.87 E-value=13 Score=41.30 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=30.3
Q ss_pred HHHcCCHHHHHHHHHHHH--cCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 225 LYRTGKYEVAREKFESVL--GSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 225 Lfk~grYeEAI~~Ye~AL--~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+.+.|++++|+..|++.. .+.|+. ..|..+..+|.+.|++++|++.+
T Consensus 694 y~k~G~~eeA~~lf~eM~~~g~~Pdv----vtyN~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 694 CSNAKNWKKALELYEDIKSIKLRPTV----STMNALITALCEGNQLPKALEVL 742 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHCCCHHHHHHHH
Confidence 356677777777777665 345554 35666666777777777776654
No 272
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.32 E-value=4.7 Score=42.42 Aligned_cols=59 Identities=22% Similarity=0.260 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh------------------------------hHHHHHHHHhHHHHhcCC
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPE------------------------------ESSVASYNVACCYSKLNQ 267 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~------------------------------e~a~A~YN~AcCyaKLgq 267 (276)
++-+-|..-+.++|++|+..-++.|.+-|++. .+..-++-+|-|+.++++
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHccc
Confidence 34455555566667777766666666666542 112223588999999999
Q ss_pred hhHHHhhhC
Q 023871 268 VPLLLALIE 276 (276)
Q Consensus 268 ~~eAI~aLE 276 (276)
.|+|+..|+
T Consensus 95 ~Dealk~~~ 103 (652)
T KOG2376|consen 95 LDEALKTLK 103 (652)
T ss_pred HHHHHHHHh
Confidence 999998764
No 273
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=76.79 E-value=12 Score=35.75 Aligned_cols=87 Identities=17% Similarity=0.127 Sum_probs=52.2
Q ss_pred ccchHH-HHHHhhcCCCcchhHHHHHH-----HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhh
Q 023871 177 ELSEKE-IIRAERNSGVISNRVREIQM-----QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE 250 (276)
Q Consensus 177 ~~~e~~-~~~~~r~~G~i~~al~Eiq~-----~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e 250 (276)
-++..+ -.++.++.|..++.+.+.=. ..+.|-..+.+. .+...++++.|+..-++.|.++|+++
T Consensus 146 ~l~~~~l~~~l~~~~~~~ael~~~~L~~a~~~~il~rll~~lk~---------~~~~e~~~~~al~~~~r~l~l~P~dp- 215 (269)
T COG2912 146 TLSQHELQEWLKGTIGPSAELLPEDLKQASNREILSRLLRNLKA---------ALLRELQWELALRVAERLLDLNPEDP- 215 (269)
T ss_pred cccHHHHHHHHHhccCcHhhhhhhhhhhccHHHHHHHHHHHHHH---------HHHHhhchHHHHHHHHHHHhhCCCCh-
Confidence 344444 46777788866666554433 112222222222 24567888888888888888888875
Q ss_pred HHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 251 SSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 251 ~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.-+--++..|+++|-..-|++.|
T Consensus 216 --~eirDrGliY~ql~c~~vAl~dl 238 (269)
T COG2912 216 --YEIRDRGLIYAQLGCYHVALEDL 238 (269)
T ss_pred --hhccCcHHHHHhcCCchhhHHHH
Confidence 23555666677777666666655
No 274
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.98 E-value=3.1 Score=25.23 Aligned_cols=24 Identities=13% Similarity=-0.040 Sum_probs=16.9
Q ss_pred HHHHHHhHHHHhcCChhHHHhhhC
Q 023871 253 VASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 253 ~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
.++++.|-.|..+|++++|...|+
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356777777777777777776654
No 275
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=75.41 E-value=2.8 Score=27.93 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=21.6
Q ss_pred HHHHHHhHHHHhcCChhHHHhhhC
Q 023871 253 VASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 253 ~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
.+|++.|-.|..+|++++|++.|+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~ 25 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLR 25 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 479999999999999999998874
No 276
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=75.33 E-value=12 Score=34.94 Aligned_cols=54 Identities=15% Similarity=0.163 Sum_probs=32.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-cCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 219 LREGLQLYRTGKYEVAREKFESVL-GSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL-~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
++-|++|.++|||.||...|+++| .+=-++. ...--+|....-+++.-+|...|
T Consensus 93 ~rLa~al~elGr~~EA~~hy~qalsG~fA~d~---a~lLglA~Aqfa~~~~A~a~~tL 147 (251)
T COG4700 93 YRLANALAELGRYHEAVPHYQQALSGIFAHDA---AMLLGLAQAQFAIQEFAAAQQTL 147 (251)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHhccccCCCH---HHHHHHHHHHHhhccHHHHHHHH
Confidence 567888888888888888888888 4433332 23334444444444444444433
No 277
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=74.82 E-value=5.8 Score=43.49 Aligned_cols=87 Identities=15% Similarity=0.128 Sum_probs=55.9
Q ss_pred HHHHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh------------
Q 023871 183 IIRAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE------------ 249 (276)
Q Consensus 183 ~~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~------------ 249 (276)
.+.+..+.++++++++...+ ..+..+. .+-.+-.|.-+++.+++.+|... .++++-+.+.
T Consensus 37 Li~~~~~~~~~deai~i~~~-----~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i 109 (906)
T PRK14720 37 LIDAYKSENLTDEAKDICEE-----HLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKI 109 (906)
T ss_pred HHHHHHhcCCHHHHHHHHHH-----HHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHH
Confidence 34555566666666555442 1111111 22345677755777778877777 7776655542
Q ss_pred ----hHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 250 ----ESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 250 ----e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
+-..|++.+|-||-++|+.++|+.++|
T Consensus 110 ~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~ye 140 (906)
T PRK14720 110 LLYGENKLALRTLAEAYAKLNENKKLKGVWE 140 (906)
T ss_pred HhhhhhhHHHHHHHHHHHHcCChHHHHHHHH
Confidence 113689999999999999999998764
No 278
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.60 E-value=0.85 Score=45.06 Aligned_cols=79 Identities=9% Similarity=0.003 Sum_probs=59.1
Q ss_pred cCCCcchhHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCC
Q 023871 189 NSGVISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ 267 (276)
Q Consensus 189 ~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~-~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq 267 (276)
|.|+...++ ..|-+++++..-....+ .+|..+-++++...||.-|+.||+|+|+.. .-|-=+...+..||+
T Consensus 126 n~G~~~~ai-----~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa---~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 126 NDGEFDTAI-----ELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA---KGYKFRGYAERLLGN 197 (377)
T ss_pred cCcchhhhh-----cccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccc---cccchhhHHHHHhhc
Confidence 667766663 56777788777765654 788888999999999999999999999974 222233344667888
Q ss_pred hhHHHhhh
Q 023871 268 VPLLLALI 275 (276)
Q Consensus 268 ~~eAI~aL 275 (276)
|++|-..|
T Consensus 198 ~e~aa~dl 205 (377)
T KOG1308|consen 198 WEEAAHDL 205 (377)
T ss_pred hHHHHHHH
Confidence 88887655
No 279
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=73.98 E-value=7.1 Score=35.24 Aligned_cols=40 Identities=20% Similarity=0.374 Sum_probs=35.1
Q ss_pred ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecc
Q 023871 95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136 (276)
Q Consensus 95 LGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~ 136 (276)
.||.+.+ .||.+.|+.|..|+.|+++| +.-|++|+.+..-
T Consensus 113 ~GL~l~~-e~~~~~Vd~v~fgS~A~~~g-~d~d~~I~~v~v~ 152 (183)
T PF11874_consen 113 AGLTLME-EGGKVIVDEVEFGSPAEKAG-IDFDWEITEVEVP 152 (183)
T ss_pred CCCEEEe-eCCEEEEEecCCCCHHHHcC-CCCCcEEEEEEec
Confidence 5788877 57899999999999999999 9999999988753
No 280
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=73.28 E-value=10 Score=32.31 Aligned_cols=69 Identities=14% Similarity=0.213 Sum_probs=42.0
Q ss_pred CcceeEE--eeeC---CCCeEEEEeCCCCCcccccCccc-CCEEEEeec-ccCCcceecccchhHHHHhhcccCceEEEE
Q 023871 93 QPYGLKF--AKGR---DGGTYIDAIAPGGSADKTGMFQV-GDKVLATSA-VFGTEIWPAAEYGRTMYTIRQRVGPLLMKM 165 (276)
Q Consensus 93 KPLGl~f--~e~~---dGgv~V~~v~~ggnA~k~G~i~v-GD~l~~~Sa-~fGdevw~a~~~g~~~~air~r~gpv~L~l 165 (276)
..||+.+ +... ..+.-|..|.|++-|+++| +++ .|.|+++.. .|. ..++|...+.+ ....++.|.+
T Consensus 26 g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~----~~~~l~~~v~~--~~~~~l~L~V 98 (138)
T PF04495_consen 26 GLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLD----DEDDLFELVEA--NENKPLQLYV 98 (138)
T ss_dssp SSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE------STCHHHHHHHH--TTTS-EEEEE
T ss_pred CCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecC----CHHHHHHHHHH--cCCCcEEEEE
Confidence 4677554 4433 4488999999999999999 665 799999764 232 35566554432 3355788877
Q ss_pred eec
Q 023871 166 QKR 168 (276)
Q Consensus 166 ~R~ 168 (276)
...
T Consensus 99 yns 101 (138)
T PF04495_consen 99 YNS 101 (138)
T ss_dssp EET
T ss_pred EEC
Confidence 653
No 281
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=72.55 E-value=5.8 Score=43.72 Aligned_cols=43 Identities=26% Similarity=0.356 Sum_probs=23.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcC
Q 023871 221 EGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN 266 (276)
Q Consensus 221 eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLg 266 (276)
-|....+.|++++|+-+|++++...|++.+ ..+=.+|-|+..+
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~e---tm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYE---TMKILGCLYAHSA 390 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHH---HHHHHHhHHHhhh
Confidence 344444556666666666666666666543 3444555555554
No 282
>PRK04841 transcriptional regulator MalT; Provisional
Probab=72.46 E-value=8.8 Score=39.99 Aligned_cols=55 Identities=18% Similarity=0.063 Sum_probs=40.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcCCCChhh--HHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 221 EGLQLYRTGKYEVAREKFESVLGSKPTPEE--SSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 221 eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e--~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.|..++..|+|++|...+++||+..|.... ...++.+.+.++..+|++++|+..+
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~ 514 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMM 514 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455567889999999999999875554322 2456778888888888888887654
No 283
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=71.85 E-value=6.1 Score=30.41 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023871 217 QDLREGLQLYRTGKYEVAREKFESVL 242 (276)
Q Consensus 217 ~~~~eGnaLfk~grYeEAI~~Ye~AL 242 (276)
+.+.+|++.-+.|+|++|+..|..+|
T Consensus 8 ~l~~~Ave~d~~~~y~eA~~~Y~~~i 33 (75)
T cd02677 8 ELIRLALEKEEEGDYEAAFEFYRAGV 33 (75)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34566777778889998888888887
No 284
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=70.97 E-value=16 Score=36.76 Aligned_cols=54 Identities=26% Similarity=0.340 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+.++.-+-..|+|+.|...-++++++.|.+++ ..-=..-||..+|.|++.+..|
T Consensus 157 ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~---vlrLa~r~y~~~g~~~~ll~~l 210 (400)
T COG3071 157 LTRARLLLNRRDYPAARENVDQLLEMTPRHPE---VLRLALRAYIRLGAWQALLAIL 210 (400)
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHhCcCChH---HHHHHHHHHHHhccHHHHHHHH
Confidence 45556667889999999999999999999985 4455678999999999887655
No 285
>PLN03218 maturation of RBCL 1; Provisional
Probab=69.58 E-value=16 Score=40.70 Aligned_cols=50 Identities=14% Similarity=0.083 Sum_probs=40.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHH--cCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 222 GLQLYRTGKYEVAREKFESVL--GSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 222 GnaLfk~grYeEAI~~Ye~AL--~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
...+.+.|++++|+..|++.. .+.||.. .|..+-.+|.+.|++++|.+.+
T Consensus 726 I~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~----Ty~sLL~a~~k~G~le~A~~l~ 777 (1060)
T PLN03218 726 ITALCEGNQLPKALEVLSEMKRLGLCPNTI----TYSILLVASERKDDADVGLDLL 777 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHCCCHHHHHHHH
Confidence 344568999999999999877 5778874 5667777888999999998765
No 286
>PLN03077 Protein ECB2; Provisional
Probab=69.53 E-value=27 Score=36.83 Aligned_cols=45 Identities=18% Similarity=0.224 Sum_probs=38.3
Q ss_pred HHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 225 LYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 225 Lfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
+.+.|++++|+..|++. .||. .+|..+..+|++.|+.++|++.++
T Consensus 534 y~k~G~~~~A~~~f~~~---~~d~----~s~n~lI~~~~~~G~~~~A~~lf~ 578 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSH---EKDV----VSWNILLTGYVAHGKGSMAVELFN 578 (857)
T ss_pred HHHcCCHHHHHHHHHhc---CCCh----hhHHHHHHHHHHcCCHHHHHHHHH
Confidence 46789999999999986 5554 678889999999999999998763
No 287
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=69.23 E-value=21 Score=39.30 Aligned_cols=55 Identities=25% Similarity=0.321 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
.-+|+.|+++|+++||+.+-+..-...|++.. ..-=.-.||-.+++.++|+...|
T Consensus 47 vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~---tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 47 VLKALSLFRLGKGDEALKLLEALYGLKGTDDL---TLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred HHHHHHHHHhcCchhHHHHHhhhccCCCCchH---HHHHHHHHHHHHhhhhHHHHHHH
Confidence 36788889999999999666655566677543 33444568999999999887653
No 288
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.97 E-value=2.6 Score=42.03 Aligned_cols=49 Identities=16% Similarity=0.227 Sum_probs=35.2
Q ss_pred HHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 224 QLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 224 aLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
..|..++-|-|+..|.+.|++--.++ .++.|++.|+.--+|+|-++.+.
T Consensus 333 ~yfY~~~PE~AlryYRRiLqmG~~sp---eLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 333 GYFYDNNPEMALRYYRRILQMGAQSP---ELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred ccccCCChHHHHHHHHHHHHhcCCCh---HHHhhHHHHHHhhcchhhhHHHH
Confidence 34555666666666666665555554 47999999999999999888765
No 289
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=68.12 E-value=12 Score=38.71 Aligned_cols=55 Identities=18% Similarity=0.185 Sum_probs=45.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+-|.-+-++|+.+|||..|...|...|.... ...+||.--|++-++.+.++-..|
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~-l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDN-LNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccch-hhHHHHHHHHHHhcCCHHHHHHHH
Confidence 4456667999999999999999987776432 468999999999999999886655
No 290
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=67.25 E-value=10 Score=42.33 Aligned_cols=91 Identities=21% Similarity=0.180 Sum_probs=60.4
Q ss_pred HHhhcCCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh
Q 023871 185 RAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK 264 (276)
Q Consensus 185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK 264 (276)
+++++.|.+.-++.|+-.+---..++=.+..|+...-.+.+|=.++|+++++.|++||.+--++.+..++..-.+-|--+
T Consensus 1008 vak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~ 1087 (1238)
T KOG1127|consen 1008 VAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGL 1087 (1238)
T ss_pred hhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhh
Confidence 36667777777777766211111111111123334455566889999999999999998877766656778888888888
Q ss_pred cCChhHHHhhh
Q 023871 265 LNQVPLLLALI 275 (276)
Q Consensus 265 Lgq~~eAI~aL 275 (276)
.++-+.|...|
T Consensus 1088 ~~~k~~A~~lL 1098 (1238)
T KOG1127|consen 1088 ARQKNDAQFLL 1098 (1238)
T ss_pred cccchHHHHHH
Confidence 88888776543
No 291
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=66.94 E-value=9.7 Score=32.70 Aligned_cols=51 Identities=22% Similarity=0.251 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChh
Q 023871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVP 269 (276)
Q Consensus 216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~ 269 (276)
+..++++.+++..|+|+-|+..-+.++..+|++.+ +..=+|-+|-+++.-.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~---ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEE---ARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HH---HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHHHHHhc
Confidence 34467888899999999999999999999999964 5555666666665443
No 292
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=66.91 E-value=7.3 Score=41.02 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=44.3
Q ss_pred HHHhhHHHHHHHHHHHH-HHHHHHHH---cCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 203 QNYMKKKEQKERREQDL-REGLQLYR---TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 203 ~nYkk~Kelkkqae~~~-~eGnaLfk---~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
..|.+.-.--+++...+ +++-.+.+ .|+--.|+.--..||.++|-. .+|||-+|.|.-.|+.+.+|+++.
T Consensus 395 ~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~---~kah~~la~aL~el~r~~eal~~~ 468 (758)
T KOG1310|consen 395 SHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI---QKAHFRLARALNELTRYLEALSCH 468 (758)
T ss_pred HHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH---HHHHHHHHHHHHHHhhHHHhhhhH
Confidence 44554444334433332 33333332 245555666666777777766 579999999999999999998864
No 293
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=65.87 E-value=17 Score=28.18 Aligned_cols=59 Identities=20% Similarity=0.159 Sum_probs=39.3
Q ss_pred CCCcchhHHHHHHHH-HhhHHHHH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh
Q 023871 190 SGVISNRVREIQMQN-YMKKKEQK----ERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTP 248 (276)
Q Consensus 190 ~G~i~~al~Eiq~~n-Ykk~Kelk----kqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~ 248 (276)
.||+..++...+..+ |.+..... .-...++..|......|++++|+..+++|+.+--..
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 477778877777633 21111111 112335678888899999999999999999775544
No 294
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional
Probab=65.82 E-value=29 Score=38.20 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=12.5
Q ss_pred cccCCEEEEeecccCCc
Q 023871 124 FQVGDKVLATSAVFGTE 140 (276)
Q Consensus 124 i~vGD~l~~~Sa~fGde 140 (276)
++-||+++.++++..++
T Consensus 108 v~~g~t~vl~t~~~~~~ 124 (891)
T PLN00207 108 VTDGETIVYTSVCLADV 124 (891)
T ss_pred EEECCeEEEEEEEeccC
Confidence 35599999998876443
No 295
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=63.76 E-value=12 Score=35.92 Aligned_cols=69 Identities=12% Similarity=0.060 Sum_probs=56.8
Q ss_pred HHhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 204 NYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 204 nYkk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.|.|+-.+...- -=+-++++.+++..+|+-+...-.+||++.||.- .++|=...|.+....+++||..|
T Consensus 32 ~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~v---k~h~flg~~~l~s~~~~eaI~~L 101 (284)
T KOG4642|consen 32 CYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLV---KAHYFLGQWLLQSKGYDEAIKVL 101 (284)
T ss_pred HHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHH---HHHHHHHHHHHhhccccHHHHHH
Confidence 455555555443 2244888899999999999999999999999984 78999999999999999999876
No 296
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=63.47 E-value=9.3 Score=36.41 Aligned_cols=46 Identities=22% Similarity=0.337 Sum_probs=33.2
Q ss_pred ccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeecC
Q 023871 119 DKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRY 169 (276)
Q Consensus 119 ~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~~ 169 (276)
+++| ++.||+.+++.-. ++-+-++.-+.|..++. ...+.|.+.|+-
T Consensus 221 ~~sg-lq~GDIavaiNnl---dltdp~~m~~llq~l~~-m~s~qlTv~R~G 266 (275)
T COG3031 221 YKSG-LQRGDIAVAINNL---DLTDPEDMFRLLQMLRN-MPSLQLTVIRRG 266 (275)
T ss_pred hhhc-CCCcceEEEecCc---ccCCHHHHHHHHHhhhc-CcceEEEEEecC
Confidence 5677 9999999998754 45555555566777775 566888888854
No 297
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=63.20 E-value=23 Score=35.27 Aligned_cols=57 Identities=12% Similarity=0.081 Sum_probs=41.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCC--ChhhHHHHHHHHhHHHHhcC--ChhHHHhhhC
Q 023871 220 REGLQLYRTGKYEVAREKFESVLGSKP--TPEESSVASYNVACCYSKLN--QVPLLLALIE 276 (276)
Q Consensus 220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P--~~~e~a~A~YN~AcCyaKLg--q~~eAI~aLE 276 (276)
..+.++|+.++|..|+..|++++.-.+ +.......+.++|-||..=. ++++|.+.|+
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 345678999999999999999995554 33334678899999987644 4456666653
No 298
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=63.13 E-value=25 Score=30.77 Aligned_cols=34 Identities=24% Similarity=0.432 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCChhh
Q 023871 217 QDLREGLQLYRTG-KYEVAREKFESVLGSKPTPEE 250 (276)
Q Consensus 217 ~~~~eGnaLfk~g-rYeEAI~~Ye~AL~i~P~~~e 250 (276)
+-+..|..|...| ++++|...|-+||.++|+..+
T Consensus 92 ~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~ 126 (148)
T TIGR00985 92 QEVQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQ 126 (148)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHH
Confidence 3468899999999 999999999999999999864
No 299
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=62.63 E-value=18 Score=36.40 Aligned_cols=81 Identities=22% Similarity=0.292 Sum_probs=56.8
Q ss_pred cccccceEEEEecCc----ceeEEeeeCCC--CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHH
Q 023871 80 QEEKYEEYEVEIEQP----YGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYT 153 (276)
Q Consensus 80 ~~~~~~~y~V~l~KP----LGl~f~e~~dG--gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~a 153 (276)
.+|..+|-+|+|.+- |||.+.-+..- -|.|..|-++-.|+-+|++=|||-|+.|... -..+-.-..+...
T Consensus 49 ~p~~s~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi----~v~~c~HeevV~i 124 (505)
T KOG3549|consen 49 PPMESKERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGI----YVTACPHEEVVNI 124 (505)
T ss_pred CCccCCceeEEEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccE----EeecCChHHHHHH
Confidence 345567788888763 56766555332 7899999999999999999999999998763 2223333345666
Q ss_pred hhcccCceEEE
Q 023871 154 IRQRVGPLLMK 164 (276)
Q Consensus 154 ir~r~gpv~L~ 164 (276)
+|+-...|+|.
T Consensus 125 LRNAGdeVtlT 135 (505)
T KOG3549|consen 125 LRNAGDEVTLT 135 (505)
T ss_pred HHhcCCEEEEE
Confidence 67655666665
No 300
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=62.25 E-value=14 Score=39.32 Aligned_cols=54 Identities=19% Similarity=0.027 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
--.|+.|..+|+-+||...-..+|..++... ++|+-.+..|--..++++||.+.
T Consensus 45 AmkGL~L~~lg~~~ea~~~vr~glr~d~~S~---vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 45 AMKGLTLNCLGKKEEAYELVRLGLRNDLKSH---VCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HhccchhhcccchHHHHHHHHHHhccCcccc---hhHHHHHHHHhhhhhHHHHHHHH
Confidence 3679999999999999999999999888885 78998888888899999998864
No 301
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=60.79 E-value=18 Score=28.38 Aligned_cols=30 Identities=17% Similarity=0.219 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023871 213 ERREQDLREGLQLYRTGKYEVAREKFESVL 242 (276)
Q Consensus 213 kqae~~~~eGnaLfk~grYeEAI~~Ye~AL 242 (276)
+++-+-++.|+.+-+.|+.++||..|.+++
T Consensus 6 ~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi 35 (79)
T cd02679 6 KQAFEEISKALRADEWGDKEQALAHYRKGL 35 (79)
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 344455688899988999999999999998
No 302
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=60.37 E-value=14 Score=37.97 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh
Q 023871 214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTP 248 (276)
Q Consensus 214 qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~ 248 (276)
.++.|+-.|--+|..++|+.|+..-++++.++|++
T Consensus 299 ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~ 333 (564)
T KOG1174|consen 299 TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRN 333 (564)
T ss_pred chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCccc
Confidence 46778888888888888888888888888888886
No 303
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=58.85 E-value=10 Score=23.55 Aligned_cols=19 Identities=26% Similarity=0.607 Sum_probs=16.2
Q ss_pred ecCcceeEEeeeCCCCeEEEE
Q 023871 91 IEQPYGLKFAKGRDGGTYIDA 111 (276)
Q Consensus 91 l~KPLGl~f~e~~dGgv~V~~ 111 (276)
+..|.||.+. .+|.+||.+
T Consensus 1 f~~P~gvav~--~~g~i~VaD 19 (28)
T PF01436_consen 1 FNYPHGVAVD--SDGNIYVAD 19 (28)
T ss_dssp BSSEEEEEEE--TTSEEEEEE
T ss_pred CcCCcEEEEe--CCCCEEEEE
Confidence 3579999998 799999987
No 304
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=57.31 E-value=18 Score=21.17 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHHcCCCChhh
Q 023871 229 GKYEVAREKFESVLGSKPTPEE 250 (276)
Q Consensus 229 grYeEAI~~Ye~AL~i~P~~~e 250 (276)
|+++.|-..|+++|...|....
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~ 22 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVE 22 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChH
Confidence 5788999999999999997754
No 305
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=57.14 E-value=44 Score=26.33 Aligned_cols=60 Identities=17% Similarity=0.178 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 213 ERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 213 kqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
..+++.++.|..++..|+|++|......|... .+.+.+......+-....+....++.|+
T Consensus 43 ~~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~~----A~~A~~~a~~~~~~~~~~~~~~~~~~l~ 102 (103)
T PF14346_consen 43 KEAREKLQRAKAALDDGDYERARRLAEQAQAD----AELAEAKAEAAKAQAERQEAEQEIEQLR 102 (103)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455667888889999999999999999853 3345566667777777777776666653
No 306
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=56.57 E-value=28 Score=34.30 Aligned_cols=59 Identities=14% Similarity=0.338 Sum_probs=40.1
Q ss_pred CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhh-cccCc-eEEEEeecCCCc
Q 023871 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR-QRVGP-LLMKMQKRYGKM 172 (276)
Q Consensus 106 gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air-~r~gp-v~L~l~R~~~~~ 172 (276)
||||..+..++-|. |++++||.|+++-.. +....++.+.-++ .+.|+ |+++.+|..++.
T Consensus 131 gvyv~~v~~~~~~~--gkl~~gD~i~avdg~------~f~s~~e~i~~v~~~k~Gd~VtI~~~r~~~~~ 191 (342)
T COG3480 131 GVYVLSVIDNSPFK--GKLEAGDTIIAVDGE------PFTSSDELIDYVSSKKPGDEVTIDYERHNETP 191 (342)
T ss_pred eEEEEEccCCcchh--ceeccCCeEEeeCCe------ecCCHHHHHHHHhccCCCCeEEEEEEeccCCC
Confidence 89999998887754 789999999998753 1223333333333 44544 588888866653
No 307
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=56.44 E-value=53 Score=32.83 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=17.1
Q ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHcCCCCh
Q 023871 217 QDLREGLQLY-RTGKYEVAREKFESVLGSKPTP 248 (276)
Q Consensus 217 ~~~~eGnaLf-k~grYeEAI~~Ye~AL~i~P~~ 248 (276)
.+.+.-+..| +..+|+.||+.-++-..+.|..
T Consensus 142 ~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~ 174 (389)
T COG2956 142 GALQQLLNIYQATREWEKAIDVAERLVKLGGQT 174 (389)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc
Confidence 3444444443 3466666666666666555554
No 308
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=56.38 E-value=30 Score=33.08 Aligned_cols=67 Identities=18% Similarity=0.324 Sum_probs=45.4
Q ss_pred eEEeeeCCCCeEEEEeCCCCCc---ccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeec
Q 023871 97 LKFAKGRDGGTYIDAIAPGGSA---DKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR 168 (276)
Q Consensus 97 l~f~e~~dGgv~V~~v~~ggnA---~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~ 168 (276)
|.|..-..+|+.==.|.||+++ ...| ++.||+++++-.. +|=+...-.++|..++. ...++|.++|.
T Consensus 196 i~lsPv~~~Gl~GYrl~Pgkd~~lF~~~G-Lq~GDva~sING~---dL~D~~qa~~l~~~L~~-~tei~ltVeRd 265 (276)
T PRK09681 196 IQLTPVRKEGIVGYAVKPGADRSLFDASG-FKEGDIAIALNQQ---DFTDPRAMIALMRQLPS-MDSIQLTVLRK 265 (276)
T ss_pred EEEEEEeeCCceEEEECCCCcHHHHHHcC-CCCCCEEEEeCCe---eCCCHHHHHHHHHHhcc-CCeEEEEEEEC
Confidence 4455542333444567898876 4677 9999999999865 45445554566666665 66789999994
No 309
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=56.35 E-value=22 Score=35.54 Aligned_cols=32 Identities=31% Similarity=0.358 Sum_probs=20.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPE 249 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~ 249 (276)
+.+.+..+++.|+-|.|...|+-||.++|+++
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p 150 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNP 150 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCH
Confidence 34555666666666666666666666666653
No 310
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.34 E-value=82 Score=29.20 Aligned_cols=120 Identities=18% Similarity=0.270 Sum_probs=73.5
Q ss_pred EEEEeecccCCcceecccch----------hHHHHhhcccCc---eEEEEeecCCCcccccccchHHHHHHhhcCCCcch
Q 023871 129 KVLATSAVFGTEIWPAAEYG----------RTMYTIRQRVGP---LLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISN 195 (276)
Q Consensus 129 ~l~~~Sa~fGdevw~a~~~g----------~~~~air~r~gp---v~L~l~R~~~~~~~~~~~~e~~~~~~~r~~G~i~~ 195 (276)
+|+++-+.||=..|.....+ .++.++..+... .-=+|.-.||.-.. +.|.-=+.++++=+.|++++
T Consensus 29 viLg~~~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Y-a~laaL~lAk~~ve~~~~d~ 107 (207)
T COG2976 29 VILGLGGLFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIY-AVLAALELAKAEVEANNLDK 107 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHH-HHHHHHHHHHHHHhhccHHH
Confidence 35566778888888766555 344455432110 00123333433222 34555556788888999999
Q ss_pred hHHHHHH-------HH------------------HhhHHHHHHHH-HH------HHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023871 196 RVREIQM-------QN------------------YMKKKEQKERR-EQ------DLREGLQLYRTGKYEVAREKFESVLG 243 (276)
Q Consensus 196 al~Eiq~-------~n------------------Ykk~Kelkkqa-e~------~~~eGnaLfk~grYeEAI~~Ye~AL~ 243 (276)
+..+.+. .+ |..+.++..+. ++ +.-+|-.|...|+-++|+..|++||+
T Consensus 108 A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~ 187 (207)
T COG2976 108 AEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALE 187 (207)
T ss_pred HHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHH
Confidence 9888885 22 33333333332 11 23578888899999999999999998
Q ss_pred CCCChh
Q 023871 244 SKPTPE 249 (276)
Q Consensus 244 i~P~~~ 249 (276)
+.++..
T Consensus 188 ~~~s~~ 193 (207)
T COG2976 188 SDASPA 193 (207)
T ss_pred ccCChH
Confidence 876664
No 311
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.27 E-value=29 Score=33.64 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=41.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHh
Q 023871 222 GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLA 273 (276)
Q Consensus 222 GnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~ 273 (276)
++-...++||+||...-+.||.-++++++ .+-|.-.|-..+|+-.++.+
T Consensus 214 Av~~l~~~~~eeAe~lL~eaL~kd~~dpe---tL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 214 AVCHLQLGRYEEAESLLEEALDKDAKDPE---TLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred HHHHHHhcCHHHHHHHHHHHHhccCCCHH---HHHHHHHHHHHhCCChHHHH
Confidence 34447899999999999999999999985 78899999888888766543
No 312
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=56.26 E-value=10 Score=30.07 Aligned_cols=37 Identities=24% Similarity=0.496 Sum_probs=27.1
Q ss_pred ceeEEeee-CCC-CeEEEEeCCCCCcccccCcccCCEEEEeecccC
Q 023871 95 YGLKFAKG-RDG-GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFG 138 (276)
Q Consensus 95 LGl~f~e~-~dG-gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fG 138 (276)
-|.++|.. ..| |.+.+-|. +.|.+++||.|++=+. +|
T Consensus 2 ~g~ViE~~~~~g~G~vatviV------~~GtL~~Gd~iv~G~~-~G 40 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIV------QNGTLKKGDVIVAGGT-YG 40 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEE------EcCeEecCCEEEECCc-cc
Confidence 36777776 344 78888887 5677999999998553 44
No 313
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=55.79 E-value=92 Score=28.20 Aligned_cols=44 Identities=18% Similarity=-0.001 Sum_probs=32.6
Q ss_pred HHHHHHHHHc------CCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhc
Q 023871 219 LREGLQLYRT------GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL 265 (276)
Q Consensus 219 ~~eGnaLfk~------grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKL 265 (276)
+..|.=.... +.+++++..|..|+.++|+.. .+||+.|..+-++
T Consensus 256 l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 256 LLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE---KAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH---HHHHHHHHHHHHH
Confidence 3445444445 899999999999999999986 3666666666554
No 314
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.03 E-value=96 Score=30.13 Aligned_cols=56 Identities=9% Similarity=0.008 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCCh---hhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTP---EESSVASYNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~---~e~a~A~YN~AcCyaKLgq~~eAI~a 274 (276)
++++-.+-+.-+-++||..|+++|.+=-++ ......+--.+..+.+++++++|-.+
T Consensus 114 leKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a 172 (308)
T KOG1585|consen 114 LEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATA 172 (308)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHH
Confidence 333334445556666666666666432222 12233344555667777777776543
No 315
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=54.43 E-value=12 Score=27.10 Aligned_cols=23 Identities=17% Similarity=-0.006 Sum_probs=19.4
Q ss_pred HHHHHHhHHHHhcCChhHHHhhh
Q 023871 253 VASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 253 ~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
..+|..|-.|.|+|+++.|...+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~ 24 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYC 24 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHH
Confidence 46899999999999999998764
No 316
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=54.31 E-value=13 Score=34.15 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 023871 219 LREGLQLYRTGKYEVAREKFESVL 242 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL 242 (276)
-+.|..+|+.++|++|+.+|+-+|
T Consensus 250 W~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 250 WNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHH
Confidence 488999999999999999999887
No 317
>PF13041 PPR_2: PPR repeat family
Probab=53.88 E-value=40 Score=22.61 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=22.9
Q ss_pred HHHHcCCHHHHHHHHHHHH--cCCCChhh
Q 023871 224 QLYRTGKYEVAREKFESVL--GSKPTPEE 250 (276)
Q Consensus 224 aLfk~grYeEAI~~Ye~AL--~i~P~~~e 250 (276)
.+.+.|++++|+..|++.. .+.||..-
T Consensus 12 ~~~~~~~~~~a~~l~~~M~~~g~~P~~~T 40 (50)
T PF13041_consen 12 GYCKAGKFEEALKLFKEMKKRGIKPDSYT 40 (50)
T ss_pred HHHHCcCHHHHHHHHHHHHHcCCCCCHHH
Confidence 3478999999999999999 67888753
No 318
>PF12854 PPR_1: PPR repeat
Probab=53.02 E-value=20 Score=23.00 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=21.1
Q ss_pred CCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 244 SKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 244 i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
+.||. ..|--+=.+|.+.|++++|++.|+
T Consensus 3 ~~Pd~----~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 3 CEPDV----VTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred CCCcH----hHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45665 345556778899999999988764
No 319
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=52.86 E-value=31 Score=35.42 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-cCCCChhhH-HHHHHH
Q 023871 216 EQDLREGLQLYRTGKYEVAREKFESVL-GSKPTPEES-SVASYN 257 (276)
Q Consensus 216 e~~~~eGnaLfk~grYeEAI~~Ye~AL-~i~P~~~e~-a~A~YN 257 (276)
...+.+|..+|+.++|.+|++.-..|| .++|...+. ...||+
T Consensus 520 ~~~f~~Ae~lF~~~~Y~~al~~~~~alE~vePG~~~ri~~~y~~ 563 (569)
T PRK04778 520 AEALNEAERLFREYDYKAALEIIATALEKVEPGVTKRIEDSYEK 563 (569)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhhCCcHHHHHHHHHHh
Confidence 445689999999999999999999999 889997665 344443
No 320
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=52.44 E-value=14 Score=28.51 Aligned_cols=50 Identities=22% Similarity=0.304 Sum_probs=37.1
Q ss_pred CcchhHHHHHH------HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023871 192 VISNRVREIQM------QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESV 241 (276)
Q Consensus 192 ~i~~al~Eiq~------~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~A 241 (276)
.++++|+.+.. +.+....++...++.-++.|.-.++.|++..|+.+|.=|
T Consensus 6 ~l~~al~~i~~~~~~~s~~~~~a~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa 61 (75)
T PF04010_consen 6 MLEEALESIEIAPPEGSPLYDAAEEILEMAESYLEDGKYFLEKGDYVNALACFSYA 61 (75)
T ss_dssp HHHHHHHHCC-----TS---HCHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34555666552 678889999999999999999999999999999987643
No 321
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=52.11 E-value=29 Score=20.41 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=18.7
Q ss_pred HHHHcCCHHHHHHHHHHHH--cCCCC
Q 023871 224 QLYRTGKYEVAREKFESVL--GSKPT 247 (276)
Q Consensus 224 aLfk~grYeEAI~~Ye~AL--~i~P~ 247 (276)
.+.+.|++++|+..|.+.. .+.||
T Consensus 9 ~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 9 GLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3578899999999999877 44454
No 322
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=51.15 E-value=32 Score=26.99 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCCCCh-hhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 234 AREKFESVLGSKPTP-EESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 234 AI~~Ye~AL~i~P~~-~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.++..+++++.+|++ . +.|..|.+|..-|++++|++.|
T Consensus 7 ~~~al~~~~a~~P~D~~----ar~~lA~~~~~~g~~e~Al~~L 45 (90)
T PF14561_consen 7 DIAALEAALAANPDDLD----ARYALADALLAAGDYEEALDQL 45 (90)
T ss_dssp HHHHHHHHHHHSTT-HH----HHHHHHHHHHHTT-HHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHH----HHHHHHHHHHHCCCHHHHHHHH
Confidence 467788899889987 7 6899999999999999999865
No 323
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=50.77 E-value=53 Score=32.13 Aligned_cols=54 Identities=17% Similarity=0.194 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcC-CCChhhHHHHHHHHhHHHHhcC--ChhHHHhhh
Q 023871 220 REGLQLYRTGKYEVAREKFESVLGS-KPTPEESSVASYNVACCYSKLN--QVPLLLALI 275 (276)
Q Consensus 220 ~eGnaLfk~grYeEAI~~Ye~AL~i-~P~~~e~a~A~YN~AcCyaKLg--q~~eAI~aL 275 (276)
.++.++|+.++|..|...|+..+.- .++.. ...+.++|-||..=. ++++|.+.|
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l 192 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRRLPGREE--YQRYKDLCEGYDAWDRFDHKEALEYL 192 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCchhh--HHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 5567788888888888888888863 44433 356777777776543 344555554
No 324
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=49.87 E-value=78 Score=31.54 Aligned_cols=70 Identities=14% Similarity=0.004 Sum_probs=49.8
Q ss_pred HHHhhHHHHHHHHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 203 QNYMKKKEQKERRE-----QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 203 ~nYkk~Kelkkqae-----~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+.|..+.++.++.. -++--+..+...++..+|+...+++|...|++. .++.-.|.++.+.++++.|+..+
T Consensus 183 ~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~---~LL~~Qa~fLl~k~~~~lAL~iA 257 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDS---ELLNLQAEFLLSKKKYELALEIA 257 (395)
T ss_pred ccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCCHHHHHHHH
Confidence 33555555444432 223344444567888999999999998888884 57888899999999999998764
No 325
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=49.48 E-value=1e+02 Score=31.24 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=41.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHh
Q 023871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLA 273 (276)
Q Consensus 220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~ 273 (276)
--|.-.++.+.|.+|-..|+.||+..|+..+ +--.|..|.++|+..+|-+
T Consensus 333 tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~----~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 333 TLGRLALKNKLWGKASEALEAALKLRPSASD----YAELADALDQLGEPEEAEQ 382 (400)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcCCChhh----HHHHHHHHHHcCChHHHHH
Confidence 3466668999999999999999999999853 4556788999999888754
No 326
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.04 E-value=19 Score=35.93 Aligned_cols=48 Identities=23% Similarity=0.365 Sum_probs=28.7
Q ss_pred HHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871 224 QLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 224 aLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a 274 (276)
+|.+..+|++||.+...-++-.|... .+..-.+-||....++.+|.++
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~r---AgLSlLgyCYY~~Q~f~~AA~C 66 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSR---AGLSLLGYCYYRLQEFALAAEC 66 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccch---HHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888778653 2334444444444444444333
No 327
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=48.65 E-value=31 Score=33.01 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.+++|+-.-..|-+.-|---|+++|++.|+-++ ++-....-+..-|+++.|.++.
T Consensus 68 ~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~---vfNyLG~Yl~~a~~fdaa~eaF 122 (297)
T COG4785 68 LFERGVLYDSLGLRALARNDFSQALAIRPDMPE---VFNYLGIYLTQAGNFDAAYEAF 122 (297)
T ss_pred HHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHH---HHHHHHHHHHhcccchHHHHHh
Confidence 578898888889999999999999999999874 5666777788889999998874
No 328
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=48.64 E-value=23 Score=36.00 Aligned_cols=65 Identities=25% Similarity=0.471 Sum_probs=48.1
Q ss_pred EEEEecC----cceeEEeeeCCC--CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhh
Q 023871 87 YEVEIEQ----PYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR 155 (276)
Q Consensus 87 y~V~l~K----PLGl~f~e~~dG--gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air 155 (276)
-.|.+-| =|||.+.-+++. -|.|..|-+|-.||.++.+-+||.|+.|. |.++-++.- .+...+++
T Consensus 86 R~V~V~K~d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVN---G~dL~~AtH-deAVqaLK 156 (506)
T KOG3551|consen 86 RRVRVVKQDAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVN---GEDLRDATH-DEAVQALK 156 (506)
T ss_pred ceeEEEEecCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEec---chhhhhcch-HHHHHHHH
Confidence 4555555 378888777444 89999999999999999999999999876 556666533 33444555
No 329
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.63 E-value=70 Score=30.83 Aligned_cols=78 Identities=14% Similarity=0.089 Sum_probs=40.3
Q ss_pred CCCcchhHHHHHH-HHHhhHHHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHcCCCCh--hhH-HH-HHHHHhHHHH
Q 023871 190 SGVISNRVREIQM-QNYMKKKEQKERREQDLREGLQL-YRTGKYEVAREKFESVLGSKPTP--EES-SV-ASYNVACCYS 263 (276)
Q Consensus 190 ~G~i~~al~Eiq~-~nYkk~Kelkkqae~~~~eGnaL-fk~grYeEAI~~Ye~AL~i~P~~--~e~-a~-A~YN~AcCya 263 (276)
.-++++++.|.+. .-|=+--+...-+..++-..-.+ ..+++|+.||..|+++....-++ -.+ .. =+.-.+.||.
T Consensus 127 l~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl 206 (288)
T KOG1586|consen 127 LQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHL 206 (288)
T ss_pred HHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhH
Confidence 3445555555544 11222233333333332222222 57899999999999998443333 222 11 1455667776
Q ss_pred hcCC
Q 023871 264 KLNQ 267 (276)
Q Consensus 264 KLgq 267 (276)
--.+
T Consensus 207 ~~~D 210 (288)
T KOG1586|consen 207 CKAD 210 (288)
T ss_pred hccc
Confidence 6333
No 330
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=48.34 E-value=86 Score=30.53 Aligned_cols=128 Identities=16% Similarity=0.146 Sum_probs=79.3
Q ss_pred cccch-hHHHHhhcccCceEEEEe--ecCCC--cc-cccccchHHHHHHhh----------cCCCcchhHHHHHHHH-Hh
Q 023871 144 AAEYG-RTMYTIRQRVGPLLMKMQ--KRYGK--ME-QTGELSEKEIIRAER----------NSGVISNRVREIQMQN-YM 206 (276)
Q Consensus 144 a~~~g-~~~~air~r~gpv~L~l~--R~~~~--~~-~~~~~~e~~~~~~~r----------~~G~i~~al~Eiq~~n-Yk 206 (276)
..++| .-+..+.+.+.|+.+.++ .-+.| .+ ..--||+.|+++|.- ..|++.++..--|+.- ..
T Consensus 129 ~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l 208 (329)
T KOG0545|consen 129 YHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQRETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICL 208 (329)
T ss_pred hcCCChhhHHHHhhCCCceEeehhhhhccCchhhccccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHH
Confidence 34444 234555666778766543 22333 22 223678888887753 3566666655555521 22
Q ss_pred hHHHHHHHH--HHHH-----------HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHh
Q 023871 207 KKKEQKERR--EQDL-----------REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLA 273 (276)
Q Consensus 207 k~Kelkkqa--e~~~-----------~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~ 273 (276)
+-..++++. .+|+ +-..=+.+.|+|-++++--..+|...|.+- .|+|-+|..|+-.=+.++|-.
T Consensus 209 ~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv---KA~frRakAhaa~Wn~~eA~~ 285 (329)
T KOG0545|consen 209 RNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV---KAYFRRAKAHAAVWNEAEAKA 285 (329)
T ss_pred HHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH---HHHHHHHHHHHhhcCHHHHHH
Confidence 223333332 2342 223333467999999999999999999985 799999999998877777754
Q ss_pred h
Q 023871 274 L 274 (276)
Q Consensus 274 a 274 (276)
.
T Consensus 286 D 286 (329)
T KOG0545|consen 286 D 286 (329)
T ss_pred H
Confidence 4
No 331
>PRK03987 translation initiation factor IF-2 subunit alpha; Validated
Probab=48.31 E-value=2.4e+02 Score=26.54 Aligned_cols=147 Identities=16% Similarity=0.141 Sum_probs=70.5
Q ss_pred ceEEEEec--CcceeEEeee----CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhccc
Q 023871 85 EEYEVEIE--QPYGLKFAKG----RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV 158 (276)
Q Consensus 85 ~~y~V~l~--KPLGl~f~e~----~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~ 158 (276)
+.+..++. ++.|+.+.-. .+|-+-+.++..+-.-.-...+++||.|...=-. .+. ..
T Consensus 10 diV~G~V~~I~~~G~fV~L~e~~gieGlI~iSEls~~~i~~i~~~~kvGd~V~vkVi~-------VD~----------~k 72 (262)
T PRK03987 10 ELVVGTVKEVKDFGAFVTLDEYPGKEGFIHISEVASGWVKNIRDHVKEGQKVVCKVIR-------VDP----------RK 72 (262)
T ss_pred CEEEEEEEEEECCEEEEEECCCCCcEEEEEHHHcCcccccCHHHhCCCCCEEEEEEEE-------Eec----------cc
Confidence 34444443 6777666553 2344445555544332223357889988874211 111 23
Q ss_pred CceEEEEeecCCCcccccccchHHHHHHhhcCCCcchhHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHcCCHHHHHHH
Q 023871 159 GPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREK 237 (276)
Q Consensus 159 gpv~L~l~R~~~~~~~~~~~~e~~~~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkqae~~-~~eGnaLfk~grYeEAI~~ 237 (276)
+.+.|.+.+-. . -..++.+..-++...+.+=++++.+.. ....+++ ..-|..|++. |..+++.
T Consensus 73 ~~I~LSlK~v~----~---~e~~~~~~~~~~~~~~~~il~~~a~~~-------~~~~e~~~~~~~~~l~~~--yg~~y~a 136 (262)
T PRK03987 73 GHIDLSLKRVN----E---HQRREKIQEWKNEQKADKWLELAAEKL-------GKSLEEAWEEVGYKLEDE--FGDLYDA 136 (262)
T ss_pred CeEEEEEEecc----c---chHHHHHHHHHHHhhHhhHHHHHHHHc-------CCCHHHHHHHHHHHHHHH--hCcHHHH
Confidence 44566655421 0 011122222223333444444444321 1223332 2334455443 7789999
Q ss_pred HHHHHcCCCCh-------hhHHHHHHHHhHHHHh
Q 023871 238 FESVLGSKPTP-------EESSVASYNVACCYSK 264 (276)
Q Consensus 238 Ye~AL~i~P~~-------~e~a~A~YN~AcCyaK 264 (276)
|+.|...+|+. .+...+..+.+.=+.+
T Consensus 137 f~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 170 (262)
T PRK03987 137 FEEAAIEGEEALDDLGVPEEWADALVEIARENIE 170 (262)
T ss_pred HHHHHhcChhhhccCCCCHHHHHHHHHHHHHhCC
Confidence 99988766653 2334455555544433
No 332
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=47.70 E-value=20 Score=34.36 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=35.5
Q ss_pred HHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh
Q 023871 203 QNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTP 248 (276)
Q Consensus 203 ~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~ 248 (276)
.-|.++.++-.+ +.-|++.|.-.-+.|+.+.|...|++.|+++|++
T Consensus 16 ely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 16 ELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred HHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 456677776555 3457777777788888899999999999999887
No 333
>smart00652 eIF1a eukaryotic translation initiation factor 1A.
Probab=46.86 E-value=54 Score=25.75 Aligned_cols=52 Identities=19% Similarity=0.178 Sum_probs=35.9
Q ss_pred ceEEEEecCcce--eEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecc
Q 023871 85 EEYEVEIEQPYG--LKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA 145 (276)
Q Consensus 85 ~~y~V~l~KPLG--l~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~ 145 (276)
++....+.+.+| +.--+..||..++..|...= -+.--|+.||.|+- ++||.+
T Consensus 5 ~q~~g~V~~~lG~~~~~V~~~dG~~~la~ipgK~--Rk~iwI~~GD~VlV-------e~~~~~ 58 (83)
T smart00652 5 GQEIAQVVKMLGNGRLEVMCADGKERLARIPGKM--RKKVWIRRGDIVLV-------DPWDFQ 58 (83)
T ss_pred CcEEEEEEEEcCCCEEEEEECCCCEEEEEEchhh--cccEEEcCCCEEEE-------EecCCC
Confidence 446677777777 33345579999998888543 34556999999987 566644
No 334
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=46.56 E-value=50 Score=33.05 Aligned_cols=27 Identities=15% Similarity=0.258 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023871 217 QDLREGLQLYRTGKYEVAREKFESVLG 243 (276)
Q Consensus 217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~ 243 (276)
+....+...-+.++|++|+..|..||+
T Consensus 12 ~lv~kA~~eD~a~nY~eA~~lY~~ale 38 (439)
T KOG0739|consen 12 DLVKKAIDEDNAKNYEEALRLYQNALE 38 (439)
T ss_pred HHHHHHhhhcchhchHHHHHHHHHHHH
Confidence 334555666678899999999988885
No 335
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=45.48 E-value=47 Score=26.09 Aligned_cols=57 Identities=21% Similarity=0.232 Sum_probs=36.6
Q ss_pred ceEEEEecCcce---eEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecc-cchhH
Q 023871 85 EEYEVEIEQPYG---LKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA-EYGRT 150 (276)
Q Consensus 85 ~~y~V~l~KPLG---l~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~-~~g~~ 150 (276)
.+.+=++.+.|| +.+. -.||.+...-|.-...=.+- .|.+||+|+- ++||.+ .-|++
T Consensus 7 ~e~~g~V~e~L~~~~f~v~-~edg~~~~ahI~GKmr~~~i-~I~~GD~V~V-------e~~~~d~~kg~I 67 (75)
T COG0361 7 IEMEGTVIEMLPNGRFRVE-LENGHERLAHISGKMRKNRI-RILPGDVVLV-------ELSPYDLTKGRI 67 (75)
T ss_pred cEEEEEEEEecCCCEEEEE-ecCCcEEEEEccCcchheeE-EeCCCCEEEE-------EecccccccccE
Confidence 456667777777 3333 36777777777644442233 4889999997 888877 44444
No 336
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=45.37 E-value=64 Score=29.21 Aligned_cols=55 Identities=11% Similarity=0.003 Sum_probs=39.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCC--hh-hHHHHHHHHhHHHHhcCChhHHHhh
Q 023871 220 REGLQLYRTGKYEVAREKFESVLGSKPT--PE-ESSVASYNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~--~~-e~a~A~YN~AcCyaKLgq~~eAI~a 274 (276)
..++.-....=++.|+..|++|++.+.. .. ....+.|=++--+-++|+.++|+.-
T Consensus 130 ~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~ 187 (214)
T PF09986_consen 130 DLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRW 187 (214)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3333344556678899999999955543 22 2267888899999999999998864
No 337
>PRK04012 translation initiation factor IF-1A; Provisional
Probab=45.20 E-value=64 Score=26.35 Aligned_cols=54 Identities=22% Similarity=0.194 Sum_probs=36.4
Q ss_pred cceEEEEecCcce--eEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceeccc
Q 023871 84 YEEYEVEIEQPYG--LKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE 146 (276)
Q Consensus 84 ~~~y~V~l~KPLG--l~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~ 146 (276)
-++....+.+.+| +.--+..||..++..|... --+.--|.+||.|+. ++|+.+.
T Consensus 20 e~e~~g~V~~~lG~~~~~V~~~dG~~~la~i~GK--~Rk~IwI~~GD~VlV-------e~~~~~~ 75 (100)
T PRK04012 20 EGEVFGVVEQMLGANRVRVRCMDGVERMGRIPGK--MKKRMWIREGDVVIV-------APWDFQD 75 (100)
T ss_pred CCEEEEEEEEEcCCCEEEEEeCCCCEEEEEEchh--hcccEEecCCCEEEE-------EecccCC
Confidence 3567777777777 3333557888888888743 334446899999987 5777653
No 338
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=45.06 E-value=1.5e+02 Score=23.79 Aligned_cols=60 Identities=25% Similarity=0.099 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh-------------------hhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTP-------------------EESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~-------------------~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+..+..|..+-..++-++++..+++|+++-.-+ ..+..+....+-++...|++++|+..+
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 85 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL 85 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 344567777888899999999999999764211 112455667777888999999998765
No 339
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.24 E-value=97 Score=27.21 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhh
Q 023871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE 250 (276)
Q Consensus 217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e 250 (276)
+-++.|.+|+..|+++++.+.+-.||.++|....
T Consensus 83 qqv~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaq 116 (143)
T KOG4056|consen 83 QQVQLGEELLAQGNEEEGAEHLANAIVVCGQPAQ 116 (143)
T ss_pred HHHHhHHHHHHccCHHHHHHHHHHHHhhcCCHHH
Confidence 3458899999999999999999999999999754
No 340
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=43.23 E-value=52 Score=34.02 Aligned_cols=53 Identities=13% Similarity=-0.035 Sum_probs=46.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHh
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLA 273 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~ 273 (276)
.+-+|+.|-+.||.++|+..|..|.-+-|-.- .+|--.-.||+-.+.+.||+.
T Consensus 337 lilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL---~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 337 LILKGRLLIALERHTQAVIAFRTAQMLAPYRL---EIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred HHhccHHHHhccchHHHHHHHHHHHhcchhhH---HHHHHHHHHHHhhchHHHHHH
Confidence 46889999999999999999999999999885 366677789999999999874
No 341
>PRK10941 hypothetical protein; Provisional
Probab=42.59 E-value=53 Score=30.96 Aligned_cols=70 Identities=14% Similarity=0.061 Sum_probs=47.1
Q ss_pred ccchHHHH-HHhh-------cCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC
Q 023871 177 ELSEKEII-RAER-------NSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPT 247 (276)
Q Consensus 177 ~~~e~~~~-~~~r-------~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~ 247 (276)
..+-.+++ |.-| ..++++.+++=+.. ...+... ..++-++|..++++|.+..|+.-++.-|+.||+
T Consensus 173 ~a~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~-----ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 173 EADNIEVIRKLLDTLKAALMEEKQMELALRASEA-----LLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH-----HHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 44556654 5555 45555555443333 1111111 234568999999999999999999999999999
Q ss_pred hhhH
Q 023871 248 PEES 251 (276)
Q Consensus 248 ~~e~ 251 (276)
++..
T Consensus 248 dp~a 251 (269)
T PRK10941 248 DPIS 251 (269)
T ss_pred chhH
Confidence 9754
No 342
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=42.51 E-value=50 Score=29.11 Aligned_cols=43 Identities=16% Similarity=0.161 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHc-CCCChhhHHHHHHHHhHHHHhcCChhHHHh
Q 023871 229 GKYEVAREKFESVLG-SKPTPEESSVASYNVACCYSKLNQVPLLLA 273 (276)
Q Consensus 229 grYeEAI~~Ye~AL~-i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~ 273 (276)
.+.++-|..++..+. -.|+.. ....|.+|--|++++|++.++.
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~~r--Re~lyYLAvg~yRlkeY~~s~~ 92 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPERR--RECLYYLAVGHYRLKEYSKSLR 92 (149)
T ss_pred HHHHHhHHHHHHHhhhcCcccc--hhhhhhhHHHHHHHhhHHHHHH
Confidence 455666677777765 333322 4556667777777777776654
No 343
>PRK03760 hypothetical protein; Provisional
Probab=42.21 E-value=42 Score=27.87 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=25.0
Q ss_pred cCcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEE
Q 023871 92 EQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132 (276)
Q Consensus 92 ~KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~ 132 (276)
-+|.- +-....+-.||-|+..| -+++.| |++||+|..
T Consensus 78 ~~P~~--~~~~~~~a~~VLEl~aG-~~~~~g-i~~Gd~v~~ 114 (117)
T PRK03760 78 LKPWR--IYVPKKPARYIIEGPVG-KIRVLK-VEVGDEIEW 114 (117)
T ss_pred CCCcc--ccCCCccceEEEEeCCC-hHHHcC-CCCCCEEEE
Confidence 36653 22334567899998755 566677 999999953
No 344
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=42.20 E-value=28 Score=23.67 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=20.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcCC
Q 023871 221 EGLQLYRTGKYEVAREKFESVLGSK 245 (276)
Q Consensus 221 eGnaLfk~grYeEAI~~Ye~AL~i~ 245 (276)
-|.--...++|++|+.-|+++|++.
T Consensus 7 Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 7 LGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3455567899999999999999753
No 345
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=41.94 E-value=42 Score=33.35 Aligned_cols=40 Identities=13% Similarity=0.051 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh
Q 023871 210 EQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE 249 (276)
Q Consensus 210 elkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~ 249 (276)
-+.+++...+..|...-+.|..-+||..|..||++-||-+
T Consensus 14 ~~~kkA~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~diE 53 (366)
T KOG2997|consen 14 PLAKKAIALYEKAVLKEQDGSLYDAINFYRDALQIVPDIE 53 (366)
T ss_pred hHHHHHHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCchHH
Confidence 3455666778899999999999999999999999999975
No 346
>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=41.31 E-value=68 Score=24.82 Aligned_cols=37 Identities=24% Similarity=0.233 Sum_probs=25.5
Q ss_pred eeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecc
Q 023871 100 AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA 145 (276)
Q Consensus 100 ~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~ 145 (276)
-+..||..++..|...=. +.--|.+||.|+- ++||.+
T Consensus 17 V~~~~g~~~la~i~gK~r--k~iwI~~GD~V~V-------e~~~~d 53 (77)
T cd05793 17 VRCFDGKKRLCRIRGKMR--KRVWINEGDIVLV-------APWDFQ 53 (77)
T ss_pred EEECCCCEEEEEEchhhc--ccEEEcCCCEEEE-------Eecccc
Confidence 344688888887774432 4446899999987 577764
No 347
>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain. IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=41.16 E-value=43 Score=26.03 Aligned_cols=46 Identities=15% Similarity=0.134 Sum_probs=29.5
Q ss_pred EecCcce--eEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceec
Q 023871 90 EIEQPYG--LKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPA 144 (276)
Q Consensus 90 ~l~KPLG--l~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a 144 (276)
.+.+++| +.--+..||..+...|... --+.--|+.||.|+. ++||.
T Consensus 5 ~V~~~lG~~~~~V~~~dg~~~l~~i~gK--~Rk~iwI~~GD~VlV-------~~~~~ 52 (78)
T cd04456 5 RVLRMLGNNRHEVECADGQRRLVSIPGK--LRKNIWIKRGDFLIV-------DPIEE 52 (78)
T ss_pred EEEEECCCCEEEEEECCCCEEEEEEchh--hccCEEEcCCCEEEE-------Eeccc
Confidence 3444444 3333446888888888743 334446899999988 56765
No 348
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=40.24 E-value=47 Score=26.61 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=16.8
Q ss_pred eEEEEeCCCCCcccccCcccCCEEEEee
Q 023871 107 TYIDAIAPGGSADKTGMFQVGDKVLATS 134 (276)
Q Consensus 107 v~V~~v~~ggnA~k~G~i~vGD~l~~~S 134 (276)
..|.+|.||.. .....+++||+|++-.
T Consensus 38 G~VvavG~g~~-~~~~~Vk~GD~Vl~~~ 64 (91)
T PRK14533 38 AEVVAVGKLDD-EEDFDIKVGDKVIFSK 64 (91)
T ss_pred EEEEEECCCCc-cccccccCCCEEEEcc
Confidence 34556666533 2244699999999743
No 349
>PF05168 HEPN: HEPN domain; InterPro: IPR007842 The HEPN (higher eukaryotes and prokaryotes nucleotide-binding) domain is a region of 110 residues found in the C terminus of sacsin, a chaperonin implicated in an early-onset neurodegenerative disease in human, and in many bacterial and archeabacterial proteins. There are three classes of proteins with HEPN domain: Single-domain HEPN proteins found in many bacteria. Two-domain proteins with N-terminal nucleotidyltransferase (NT) and C- terminal HEPN domains. This N-terminal NT domain belongs to a large family of NTs, which includes several classes of enzymes that are responsible for some types of bacterial resistance to aminoglycosides. These enzymes deactivate various antibiotics by transferring a nucleotidyl group to the drug. A multidomain sacsin protein in genomes of fish and mammals. The HEPN domain is located at the C terminus of the protein, directly after the DnaJ domain (see PDOC00553 from PROSITEDOC). The crystal structure of the HEPN domain from the TM0613 protein of Thermotoga maritima indicates that it is structurally similar to the C-terminal all- alpha-helical domain of kanamycin nucleotidyltransferases (KNTases). It is composed of five alpha helices, three of which form an up- and-down helical bundle, with a pair of short helices on the side. The distant structural similarity suggests that the HEPN domain might be involved in nucleotide binding [].; PDB: 1O3U_A 1WOL_A 3O10_D 2HSB_A 1UFB_A.
Probab=38.95 E-value=1.7e+02 Score=22.12 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023871 209 KEQKERREQDLREGLQLYRTGKYEVAREKFESVLG 243 (276)
Q Consensus 209 Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~ 243 (276)
+....+++..++.+..+++.|+|..|+-....|++
T Consensus 2 ~~~~~~A~~~l~~A~~~~~~~~~~~a~~~a~~a~e 36 (118)
T PF05168_consen 2 QDWLEKAEEDLKAAEILLEEGDYNWAVFHAYQAVE 36 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34556777788889999999999988777666653
No 350
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=38.59 E-value=66 Score=32.43 Aligned_cols=60 Identities=10% Similarity=0.014 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh-----hHHHHHHHHhHHHHhcCChhHHH
Q 023871 213 ERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE-----ESSVASYNVACCYSKLNQVPLLL 272 (276)
Q Consensus 213 kqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~-----e~a~A~YN~AcCyaKLgq~~eAI 272 (276)
+.+++.+.-|+.++..++|+.|.+.|..|+.++-..+ +...++|--...++++++.+.++
T Consensus 39 ~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 39 KTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345556999999999999999999999998875532 23556666667777777766655
No 351
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=38.46 E-value=1.6e+02 Score=26.64 Aligned_cols=65 Identities=12% Similarity=0.101 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhh-HHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 211 QKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE-SSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 211 lkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e-~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
......-|+.-+....+.|+|+-|.....++...++.... .....+-.|...-..|+.++|+..|
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L 207 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKL 207 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHH
Confidence 4445566788888889999999999999999987643321 2334555666666677777777765
No 352
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=38.25 E-value=52 Score=33.90 Aligned_cols=35 Identities=29% Similarity=0.407 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHH-cCCCChhhH
Q 023871 217 QDLREGLQLYRT-GKYEVAREKFESVL-GSKPTPEES 251 (276)
Q Consensus 217 ~~~~eGnaLfk~-grYeEAI~~Ye~AL-~i~P~~~e~ 251 (276)
.++.+|..+|.. ++|++|++.-..|| .++|...+.
T Consensus 517 ~al~~Ae~~F~~~~~Y~~ALe~i~~alE~vePG~~~r 553 (560)
T PF06160_consen 517 EALTEAEDLFRNEYDYEKALETIATALEKVEPGAYKR 553 (560)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 345889999999 99999999999999 889997654
No 353
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.21 E-value=60 Score=32.14 Aligned_cols=43 Identities=16% Similarity=0.046 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHcCCCChhhH-HHHHHHHhHHHHhcCChhHHH
Q 023871 230 KYEVAREKFESVLGSKPTPEES-SVASYNVACCYSKLNQVPLLL 272 (276)
Q Consensus 230 rYeEAI~~Ye~AL~i~P~~~e~-a~A~YN~AcCyaKLgq~~eAI 272 (276)
..++||..|+++|+++|+-.+- ..|+-..-..+.+++++++-+
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm 85 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMM 85 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHH
Confidence 4566666666666666665544 445555555555555555543
No 354
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=37.89 E-value=87 Score=28.33 Aligned_cols=28 Identities=36% Similarity=0.419 Sum_probs=23.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCC
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSK 245 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~ 245 (276)
++--|.-.++.|+|++|+.+|.+++...
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3456666689999999999999999654
No 355
>PF02643 DUF192: Uncharacterized ACR, COG1430; InterPro: IPR003795 This entry describes proteins of unknown function.; PDB: 3M7A_B 3PJY_B.
Probab=37.07 E-value=26 Score=28.35 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=17.4
Q ss_pred CCCCeEEEEeCCCCCcccccCcccCCEEE
Q 023871 103 RDGGTYIDAIAPGGSADKTGMFQVGDKVL 131 (276)
Q Consensus 103 ~dGgv~V~~v~~ggnA~k~G~i~vGD~l~ 131 (276)
..+.-||-|+.+| .+++-| |++||+|.
T Consensus 79 ~~~a~~vLE~~aG-~~~~~~-i~~Gd~v~ 105 (108)
T PF02643_consen 79 YKPARYVLELPAG-WFEKLG-IKVGDRVR 105 (108)
T ss_dssp CCEECEEEEEETT-HHHHHT---TT-EEE
T ss_pred CCccCEEEEcCCC-chhhcC-CCCCCEEE
Confidence 3556788888865 456667 99999986
No 356
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=36.80 E-value=1e+02 Score=27.37 Aligned_cols=47 Identities=19% Similarity=0.190 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCCh
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV 268 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~ 268 (276)
.-+|.-+-..|+|.+|+..++.+.+-.|..+ .+.-=.|+|+..+++.
T Consensus 48 ~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p---~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 48 LFDGWLHIVRGDWDDALRLLRELEERAPGFP---YAKALLALCLYALGDP 94 (160)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhccCCCCh---HHHHHHHHHHHHcCCh
Confidence 4678888999999999999999877777765 4555678888888764
No 357
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=36.16 E-value=2.5e+02 Score=24.40 Aligned_cols=85 Identities=7% Similarity=-0.102 Sum_probs=46.0
Q ss_pred cCCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--CChhhH-HHHHHHHhHHHHhc
Q 023871 189 NSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSK--PTPEES-SVASYNVACCYSKL 265 (276)
Q Consensus 189 ~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~--P~~~e~-a~A~YN~AcCyaKL 265 (276)
..|++++|++.... .+.++--.....+-++.--...+..++|.......++|-.+- +.+.+. ..+..-.+..+...
T Consensus 48 ~~Gd~~~A~k~y~~-~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~ 126 (177)
T PF10602_consen 48 KIGDLEEALKAYSR-ARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQ 126 (177)
T ss_pred HhhhHHHHHHHHHH-HhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHh
Confidence 67777777776665 333333333344333344444466677777777667666332 223222 33444445555566
Q ss_pred CChhHHHhh
Q 023871 266 NQVPLLLAL 274 (276)
Q Consensus 266 gq~~eAI~a 274 (276)
+++..|...
T Consensus 127 r~f~~AA~~ 135 (177)
T PF10602_consen 127 RDFKEAAEL 135 (177)
T ss_pred chHHHHHHH
Confidence 777776554
No 358
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=36.08 E-value=44 Score=29.47 Aligned_cols=33 Identities=15% Similarity=0.269 Sum_probs=28.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhh
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEE 250 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e 250 (276)
.+=-+...|+.|+|+.++..-+.-|+++|++..
T Consensus 74 lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 74 LYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 356677889999999999999999999999964
No 359
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=35.62 E-value=49 Score=26.47 Aligned_cols=44 Identities=20% Similarity=0.506 Sum_probs=29.3
Q ss_pred ceeEEeee-CCC-CeEEEEeCCCCCcccccCcccCCEEEEeecccC--Ccceecc
Q 023871 95 YGLKFAKG-RDG-GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFG--TEIWPAA 145 (276)
Q Consensus 95 LGl~f~e~-~dG-gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fG--devw~a~ 145 (276)
-|+++|.. ..| |.+.+-|. +.|.+++||.|++=++ +| .-||+..
T Consensus 2 ~g~VlE~~~~~g~G~vatviV------~~GtL~~Gd~iv~G~~-~gkVr~l~d~~ 49 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLV------QNGTLKVGDVLVAGTT-YGKVRAMFDEN 49 (95)
T ss_pred eEEEEEEEecCCCCccEEEEE------EcCeEeCCCEEEEccc-ccEEEEEECCC
Confidence 36777776 334 77777777 5567999999998553 55 3344433
No 360
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.47 E-value=75 Score=30.84 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=13.6
Q ss_pred HHHHHHhHH-HHhcCChhHHHhhhC
Q 023871 253 VASYNVACC-YSKLNQVPLLLALIE 276 (276)
Q Consensus 253 ~A~YN~AcC-yaKLgq~~eAI~aLE 276 (276)
+-+||+||| |...|-.+-|-.+||
T Consensus 91 vdl~eKAs~lY~E~GspdtAAmale 115 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDTAAMALE 115 (308)
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHH
Confidence 446676666 455566655555543
No 361
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=35.21 E-value=32 Score=36.55 Aligned_cols=43 Identities=28% Similarity=0.338 Sum_probs=40.0
Q ss_pred Cc---ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeec
Q 023871 93 QP---YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSA 135 (276)
Q Consensus 93 KP---LGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa 135 (276)
|| +|+.+.-.-||-.+|..+.++.-|+....|..||.|+.+--
T Consensus 210 kp~eglg~~I~Ssydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~ 255 (638)
T KOG1738|consen 210 SPSEGLGLYIDSSYDGPHVTSKIFEQSPADYRQKILDGDEVLQINE 255 (638)
T ss_pred CcccCCceEEeeecCCceeccccccCChHHHhhcccCccceeeecc
Confidence 78 89999998999999999999999999999999999998764
No 362
>PF01176 eIF-1a: Translation initiation factor 1A / IF-1; InterPro: IPR006196 The S1 domain of around 70 amino acids, originally identified in ribosomal protein S1, is found in a large number of RNA-associated proteins. It has been shown that S1 proteins bind RNA through their S1 domains with some degree of sequence specificity. This type of S1 domain is found in translation initiation factor 1. The solution structure of one S1 RNA-binding domain from Escherichia coli polynucleotide phosphorylase has been determined []. It displays some similarity with the cold shock domain (CSD) (IPR002059 from INTERPRO). Both the S1 and the CSD domain consist of an antiparallel beta barrel of the same topology with 5 beta strands. This fold is also shared by many other proteins of unrelated function and is known as the OB fold. However, the S1 and CSD fold can be distinguished from the other OB folds by the presence of a short 3(10) helix at the end of strand 3. This unique feature is likely to form a part of the DNA/RNA-binding site. This entry is specific for bacterial, chloroplastic and eukaryotic IF-1 type S1 domains.; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1JT8_A 3I4O_A 1AH9_A 1ZO1_W 1D7Q_A 2OQK_A 2DGY_A 1HR0_W.
Probab=34.81 E-value=55 Score=24.18 Aligned_cols=45 Identities=24% Similarity=0.189 Sum_probs=27.2
Q ss_pred eEEEEecCcce--eEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEE
Q 023871 86 EYEVEIEQPYG--LKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132 (276)
Q Consensus 86 ~y~V~l~KPLG--l~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~ 132 (276)
+....+.+++| +.--+..||......|... --+.=-|+.||.|+-
T Consensus 4 e~~~~V~~~lG~~~~~V~~~dg~~~l~~i~gK--~r~~iwI~~GD~V~V 50 (65)
T PF01176_consen 4 EVIGRVTEMLGNNLFEVECEDGEERLARIPGK--FRKRIWIKRGDFVLV 50 (65)
T ss_dssp EEEEEEEEEESSSEEEEEETTSEEEEEEE-HH--HHTCC---TTEEEEE
T ss_pred EEEEEEEEECCCCEEEEEeCCCCEEEEEeccc--eeeeEecCCCCEEEE
Confidence 45566667777 3334457888888888744 444457999999876
No 363
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.72 E-value=58 Score=32.98 Aligned_cols=46 Identities=15% Similarity=-0.019 Sum_probs=33.7
Q ss_pred HHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871 226 YRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 226 fk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a 274 (276)
-+.|-|++|-..-++||+++|.+- =++.-+|.++-..++++++++-
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~---Wa~Ha~aHVlem~~r~Keg~eF 231 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDC---WASHAKAHVLEMNGRHKEGKEF 231 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcch---HHHHHHHHHHHhcchhhhHHHH
Confidence 467999999999999999999983 3444455555556666666653
No 364
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=34.72 E-value=60 Score=26.68 Aligned_cols=24 Identities=33% Similarity=0.327 Sum_probs=14.7
Q ss_pred EEEEeCCCCCcccccCcccCCEEEE
Q 023871 108 YIDAIAPGGSADKTGMFQVGDKVLA 132 (276)
Q Consensus 108 ~V~~v~~ggnA~k~G~i~vGD~l~~ 132 (276)
-|.+|.+|..-. ...|++||+|++
T Consensus 48 ~VvAVG~G~~~~-~~~Vk~GD~Vl~ 71 (100)
T PTZ00414 48 TVVAVAAATKDW-TPTVKVGDTVLL 71 (100)
T ss_pred EEEEECCCCccc-cceecCCCEEEE
Confidence 344555553221 335999999997
No 365
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.63 E-value=1.4e+02 Score=28.98 Aligned_cols=35 Identities=20% Similarity=0.107 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh
Q 023871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE 249 (276)
Q Consensus 215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~ 249 (276)
.|.|.+-++-.+..|+|+.|.=+||+.+=+.|-++
T Consensus 154 ~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~ 188 (289)
T KOG3060|consen 154 QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP 188 (289)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH
Confidence 35577778888899999999999999999999874
No 366
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=34.33 E-value=1.6e+02 Score=28.25 Aligned_cols=58 Identities=19% Similarity=0.132 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
...++.+++..+..++|+...+..+...++..+......=+|..+..-|+.+-|+..|
T Consensus 216 ~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll 273 (301)
T TIGR03362 216 LREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLY 273 (301)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3477899999999999999999988777776665566666777777777777776654
No 367
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=33.73 E-value=1.4e+02 Score=31.22 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=42.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
...+|.=||..|+|.+|+..-.=...+.|... ++-=...|..-...+++|...|
T Consensus 465 ~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~----~~RLlGl~l~e~k~Y~eA~~~l 518 (549)
T PF07079_consen 465 FLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQ----AYRLLGLCLMENKRYQEAWEYL 518 (549)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCcHH----HHHHHHHHHHHHhhHHHHHHHH
Confidence 45778888999999999988777779999663 5666677777777788877654
No 368
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=33.70 E-value=26 Score=24.51 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=17.7
Q ss_pred HHHHhHHHHhcCChhHHHhhhC
Q 023871 255 SYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 255 ~YN~AcCyaKLgq~~eAI~aLE 276 (276)
.+|.|..|..+|+.+.|.+.||
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~ 23 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLE 23 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHH
Confidence 5788888888888888887764
No 369
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=33.67 E-value=41 Score=31.12 Aligned_cols=55 Identities=24% Similarity=0.146 Sum_probs=29.1
Q ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 218 DLREGLQLYR-TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 218 ~~~eGnaLfk-~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
++.-|.--+. .++.+-|...|+.+|..-|++.++ |..=.-...++++.+.|-..+
T Consensus 38 y~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~---~~~Y~~~l~~~~d~~~aR~lf 93 (280)
T PF05843_consen 38 YVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDF---WLEYLDFLIKLNDINNARALF 93 (280)
T ss_dssp HHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHH---HHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHhCcHHHHHHHH
Confidence 3444444455 455555888888888777776543 222223445666666654433
No 370
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=33.26 E-value=68 Score=26.75 Aligned_cols=36 Identities=31% Similarity=0.505 Sum_probs=25.1
Q ss_pred eeEEeee-CCC-CeEEEEeCCCCCcccccCcccCCEEEEeecccC
Q 023871 96 GLKFAKG-RDG-GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFG 138 (276)
Q Consensus 96 Gl~f~e~-~dG-gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fG 138 (276)
|.++|-. ..| |..++-|.- .|.+++||+|+..+. +|
T Consensus 3 gtVlEvk~~~G~G~t~dvIl~------~GtL~~GD~Iv~g~~-~G 40 (110)
T cd03703 3 GTVLEVKEEEGLGTTIDVILY------DGTLREGDTIVVCGL-NG 40 (110)
T ss_pred EEEEEEEEcCCCceEEEEEEE------CCeEecCCEEEEccC-CC
Confidence 5566655 345 777788874 456999999998763 44
No 371
>KOG1320 consensus Serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=33.06 E-value=1.1e+02 Score=31.54 Aligned_cols=59 Identities=15% Similarity=0.278 Sum_probs=44.0
Q ss_pred CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc-cCceEEEEeecCCC
Q 023871 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR-VGPLLMKMQKRYGK 171 (276)
Q Consensus 106 gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r-~gpv~L~l~R~~~~ 171 (276)
+|+|.+|-||+-+...+ +..||+|+++... +....+.++..|+.- .++....|.|+..+
T Consensus 399 ~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~------~V~n~~~l~~~i~~~~~~~~v~vl~~~~~e 458 (473)
T KOG1320|consen 399 LVLVSQVLPGSINGGYG-LKPGDQVVKVNGK------PVKNLKHLYELIEECSTEDKVAVLDRRSAE 458 (473)
T ss_pred EEEEEEeccCCCccccc-ccCCCEEEEECCE------EeechHHHHHHHHhcCcCceEEEEEecCcc
Confidence 69999999999999777 9999999998764 455666667777742 23456667776554
No 372
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=32.76 E-value=2.6e+02 Score=22.33 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh
Q 023871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTP 248 (276)
Q Consensus 216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~ 248 (276)
..+..+|+..+-.|||+.|-....++-+..++.
T Consensus 60 ~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~ 92 (108)
T PF07219_consen 60 QRALSRGLIALAEGDWQRAEKLLAKAAKLSDNP 92 (108)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence 356799999999999999999999997664444
No 373
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=32.74 E-value=70 Score=32.39 Aligned_cols=26 Identities=50% Similarity=0.814 Sum_probs=22.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcC
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLGS 244 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~i 244 (276)
++.|.++|..|++++|+..|..+|-.
T Consensus 208 Lk~gyk~~t~gKF~eA~~~Fr~iL~~ 233 (422)
T PF06957_consen 208 LKEGYKLFTAGKFEEAIEIFRSILHS 233 (422)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 48899999999999999999999943
No 374
>PRK10316 hypothetical protein; Provisional
Probab=32.66 E-value=1.6e+02 Score=27.35 Aligned_cols=60 Identities=12% Similarity=0.037 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--------CChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 213 ERREQDLREGLQLYRTGKYEVAREKFESVLGSK--------PTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 213 kqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~--------P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
...+.++..+|+..+.|+..+|++...-| .++ |-.. ...--++|....+.|++.+|-..|
T Consensus 125 p~K~~Ava~AN~~Lk~Gd~~~A~e~LklA-gvdv~~~~al~PL~q--T~~~V~~A~~ll~~gkyyeA~~aL 192 (209)
T PRK10316 125 PEKEAAIKIANEKMAKGDKKGAMEELRLA-GVGVMENQYLMPLKQ--TRNAVADAQKLLDKGKYYEANLAL 192 (209)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHc-CcchhhHhHhcCchh--hHHHHHHHHHHHhCCChhHHHHHH
Confidence 34556788889999999999998764322 222 2221 223457788888888888887665
No 375
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=32.36 E-value=69 Score=25.58 Aligned_cols=11 Identities=55% Similarity=0.622 Sum_probs=9.2
Q ss_pred CcccCCEEEEe
Q 023871 123 MFQVGDKVLAT 133 (276)
Q Consensus 123 ~i~vGD~l~~~ 133 (276)
.|++||+|++-
T Consensus 58 ~vk~GD~Vlf~ 68 (95)
T PRK00364 58 DVKVGDKVLFG 68 (95)
T ss_pred ccCCCCEEEEc
Confidence 58999999974
No 376
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=32.28 E-value=1.7e+02 Score=32.13 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHH
Q 023871 232 EVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLL 272 (276)
Q Consensus 232 eEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI 272 (276)
.+++..+++|++.+|+|+ .+-|+.|-=|+-+++++.|+
T Consensus 461 ~kslqale~av~~d~~dp---~~if~lalq~A~~R~l~sAl 498 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDP---LVIFYLALQYAEQRQLTSAL 498 (799)
T ss_pred HHHHHHHHHHHhcCCCCc---hHHHHHHHHHHHHHhHHHHH
Confidence 345555666666666554 34444444444444444444
No 377
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=30.73 E-value=92 Score=18.49 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=15.5
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 023871 224 QLYRTGKYEVAREKFESVL 242 (276)
Q Consensus 224 aLfk~grYeEAI~~Ye~AL 242 (276)
.+.+.|+++.|+..|+.-.
T Consensus 10 a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 10 ACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 3478899999999998765
No 378
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=30.25 E-value=1e+02 Score=29.84 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=25.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCChh
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPE 249 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~ 249 (276)
.=-|..+|+.|+|.+|+..++.-|++.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 3446667999999999999999997776654
No 379
>COG1430 Uncharacterized conserved protein [Function unknown]
Probab=30.23 E-value=58 Score=27.75 Aligned_cols=40 Identities=25% Similarity=0.358 Sum_probs=24.5
Q ss_pred CcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEee
Q 023871 93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (276)
Q Consensus 93 KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~S 134 (276)
+|....--....+.-||-|+..| -+++.| |+|||+|....
T Consensus 82 ~P~~~~~~~~~~~~~yvLEl~~G-~~~~~~-i~vGd~v~~~~ 121 (126)
T COG1430 82 VPWSTYPCKSYGPVRYVLELPAG-WAARLG-IKVGDRVEFRP 121 (126)
T ss_pred cccccCCCCCCCCccEEEEecCC-chhhcC-CccCCEEEecc
Confidence 44443333332333688888755 455566 99999998643
No 380
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=29.73 E-value=1.1e+02 Score=33.37 Aligned_cols=47 Identities=21% Similarity=0.118 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCCh
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV 268 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~ 268 (276)
+.-|.-++...+|+.|.++|++|+.++|++.+ +|.+--.-++..|.-
T Consensus 821 laia~lfw~e~k~~kar~Wf~Ravk~d~d~GD---~wa~fykfel~hG~e 867 (913)
T KOG0495|consen 821 LAIAKLFWSEKKIEKAREWFERAVKKDPDNGD---AWAWFYKFELRHGTE 867 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCccch---HHHHHHHHHHHhCCH
Confidence 45566668889999999999999999999975 555555566666643
No 381
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=28.84 E-value=98 Score=24.58 Aligned_cols=29 Identities=31% Similarity=0.369 Sum_probs=16.5
Q ss_pred CeEEEEeCCCCCc----ccccCcccCCEEEEee
Q 023871 106 GTYIDAIAPGGSA----DKTGMFQVGDKVLATS 134 (276)
Q Consensus 106 gv~V~~v~~ggnA----~k~G~i~vGD~l~~~S 134 (276)
...|.+|.||--. .....+++||+|++--
T Consensus 36 ~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~ 68 (93)
T cd00320 36 EGKVVAVGPGRRNENGERVPLSVKVGDKVLFPK 68 (93)
T ss_pred EEEEEEECCCeECCCCCCccccccCCCEEEECC
Confidence 3445566665210 1123599999999744
No 382
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=28.64 E-value=1.7e+02 Score=20.38 Aligned_cols=29 Identities=24% Similarity=0.236 Sum_probs=24.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCChh
Q 023871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPE 249 (276)
Q Consensus 220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~ 249 (276)
+-+.++.+.|+++.|...-+.+|. +++.+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~-~~~~~ 32 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIE-EGDEA 32 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH-cCCHH
Confidence 567788999999999999999994 45543
No 383
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=28.25 E-value=1.4e+02 Score=30.45 Aligned_cols=33 Identities=24% Similarity=0.197 Sum_probs=27.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHH
Q 023871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESS 252 (276)
Q Consensus 220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a 252 (276)
++|-+-+.+|..+||-.-|+.+|.++|+..|..
T Consensus 170 RR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 170 RRMQARESLGNNMEAKKDCETVLALEPKNIELK 202 (536)
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHH
Confidence 455555789999999999999999999987653
No 384
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=27.82 E-value=4.5e+02 Score=26.57 Aligned_cols=148 Identities=18% Similarity=0.123 Sum_probs=69.6
Q ss_pred CCcccccCcccCCEEEEeecc-----cCCcceecccchhHHHHhhccc--CceEEEEeecCCCcccccccchHHHHHHhh
Q 023871 116 GSADKTGMFQVGDKVLATSAV-----FGTEIWPAAEYGRTMYTIRQRV--GPLLMKMQKRYGKMEQTGELSEKEIIRAER 188 (276)
Q Consensus 116 gnA~k~G~i~vGD~l~~~Sa~-----fGdevw~a~~~g~~~~air~r~--gpv~L~l~R~~~~~~~~~~~~e~~~~~~~r 188 (276)
...-|+| +=+||++++|+.. .|++.--...+...+|.++-.. +-|+ -+-|...-....-+++|=+ ++.-=
T Consensus 196 ~~~IkSg-~W~~d~fiYtT~~~lkYl~~Ge~~~i~~ld~~~yllgy~~~~~~ly-~~Dr~~~v~~~~ld~~~~~-fk~av 272 (443)
T PF04053_consen 196 SERIKSG-CWVEDCFIYTTSNHLKYLVNGETGIIAHLDKPLYLLGYLPKENRLY-LIDRDGNVISYELDLSELE-FKTAV 272 (443)
T ss_dssp -S--SEE-EEETTEEEEE-TTEEEEEETTEEEEEEE-SS--EEEEEETTTTEEE-EE-TT--EEEEE--HHHHH-HHHHH
T ss_pred cceeEEE-EEEcCEEEEEcCCeEEEEEcCCcceEEEcCCceEEEEEEccCCEEE-EEECCCCEEEEEECHHHHH-HHHHH
Confidence 3456788 7789999999984 5666666667777888887544 4333 3445444445555566654 22222
Q ss_pred cCCCcchhHHHHHHHHHh-hHHHHHHHHHHHHHHHHH-HHHcCCHHHHHH-------HHHHHHcCC-----------CCh
Q 023871 189 NSGVISNRVREIQMQNYM-KKKEQKERREQDLREGLQ-LYRTGKYEVARE-------KFESVLGSK-----------PTP 248 (276)
Q Consensus 189 ~~G~i~~al~Eiq~~nYk-k~Kelkkqae~~~~eGna-Lfk~grYeEAI~-------~Ye~AL~i~-----------P~~ 248 (276)
-.+++++.++.++..+.. +.- +. ..+.... |.+.|.++.|+. .|+-||++. .++
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~--~~----~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~ 346 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIP--KD----QGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDD 346 (443)
T ss_dssp HTT-HHH-----HHHHTGGG----HH----HHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCST
T ss_pred HcCChhhhhhhhhhhhhcccCC--hh----HHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCc
Confidence 335666655555421111 000 00 0011111 134455555443 244443321 122
Q ss_pred hhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 249 EESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 249 ~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+ .-|-.++-....+|+++-|.+|+
T Consensus 347 ~---~~W~~Lg~~AL~~g~~~lAe~c~ 370 (443)
T PF04053_consen 347 P---EKWKQLGDEALRQGNIELAEECY 370 (443)
T ss_dssp H---HHHHHHHHHHHHTTBHHHHHHHH
T ss_pred H---HHHHHHHHHHHHcCCHHHHHHHH
Confidence 2 36888888888999998888775
No 385
>PRK11906 transcriptional regulator; Provisional
Probab=27.80 E-value=75 Score=32.60 Aligned_cols=45 Identities=18% Similarity=0.163 Sum_probs=36.2
Q ss_pred HhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh
Q 023871 205 YMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE 249 (276)
Q Consensus 205 Ykk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~ 249 (276)
++++..|.... ..++-.|.-++-.|+.++|++..++||.++|.-.
T Consensus 361 f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 361 FEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred HHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence 56666666553 3357888888999999999999999999999863
No 386
>KOG1421 consensus Predicted signaling-associated protein (contains a PDZ domain) [General function prediction only]
Probab=27.56 E-value=79 Score=34.54 Aligned_cols=32 Identities=31% Similarity=0.596 Sum_probs=27.9
Q ss_pred CCCCeEEEEeCCCCCcccccCcccCCEEEEeecc
Q 023871 103 RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136 (276)
Q Consensus 103 ~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~ 136 (276)
+-|-..|..|.++|-|+|. ++.||+|+++-.+
T Consensus 301 ~tgmLvV~~vL~~gpa~k~--Le~GDillavN~t 332 (955)
T KOG1421|consen 301 RTGMLVVETVLPEGPAEKK--LEPGDILLAVNST 332 (955)
T ss_pred cceeEEEEEeccCCchhhc--cCCCcEEEEEcce
Confidence 5678899999999999976 7999999999853
No 387
>PF10752 DUF2533: Protein of unknown function (DUF2533) ; InterPro: IPR019688 This entry represents proteins with unknown function, and appear to be restricted to Bacillus spp.
Probab=27.53 E-value=1.3e+02 Score=24.19 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=28.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCH--HHHHHHHH
Q 023871 203 QNYMKKKEQKERREQDLREGLQLYRTGKY--EVAREKFE 239 (276)
Q Consensus 203 ~nYkk~Kelkkqae~~~~eGnaLfk~grY--eEAI~~Ye 239 (276)
+.-|+-.+|..++|.+++++..+.+.|.- -++|.--+
T Consensus 16 ~~~k~F~~Le~~RE~aIeeav~~c~~g~pFs~d~IN~vT 54 (84)
T PF10752_consen 16 AIIKQFLQLEQQREAAIEEAVSLCKQGEPFSTDKINEVT 54 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcHHHHHHHH
Confidence 55778889999999999999999998863 34444333
No 388
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=27.51 E-value=2.3e+02 Score=28.28 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=35.1
Q ss_pred ccceEEEEecCcceeEEeeeCCC---CeEE------EEeCCCCCcccccCcccCCEEEEeecc
Q 023871 83 KYEEYEVEIEQPYGLKFAKGRDG---GTYI------DAIAPGGSADKTGMFQVGDKVLATSAV 136 (276)
Q Consensus 83 ~~~~y~V~l~KPLGl~f~e~~dG---gv~V------~~v~~ggnA~k~G~i~vGD~l~~~Sa~ 136 (276)
...+..+| .|||=++=++. +| .+++ --+.|+|..----.+++||+|...-..
T Consensus 278 ~VGRvKIE-~RPLllIeA~~-~g~~~svilQnaetIRlv~p~G~~vsVt~Lk~GD~vL~~~~~ 338 (354)
T PF01959_consen 278 IVGRVKIE-RRPLLLIEAEA-DGKRISVILQNAETIRLVGPDGEPVSVTELKPGDEVLVYLEE 338 (354)
T ss_pred EeeEEEEe-ecceEEEEEEe-CCeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEEEEecC
Confidence 34556777 78998877776 55 3333 235677775544469999999987654
No 389
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=27.30 E-value=89 Score=33.77 Aligned_cols=42 Identities=19% Similarity=0.134 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhH
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC 260 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~Ac 260 (276)
+-.|+...-+.+.+.||..|.+||+.+|+..+...-+--++|
T Consensus 680 ~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 680 LSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 456677777788999999999999999999876555666666
No 390
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=27.19 E-value=46 Score=26.17 Aligned_cols=41 Identities=24% Similarity=0.232 Sum_probs=25.6
Q ss_pred CcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeec
Q 023871 123 MFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR 168 (276)
Q Consensus 123 ~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~ 168 (276)
.+++||.|+-+|..+|.-+.-.+++- -+.. +..+.+++.|.
T Consensus 37 ~L~~Gd~VvT~gGi~G~V~~i~d~~v----~vei-~~g~~i~~~r~ 77 (84)
T TIGR00739 37 SLKKGDKVLTIGGIIGTVTKIAENTI----VIEL-NDNTEITFSKN 77 (84)
T ss_pred hCCCCCEEEECCCeEEEEEEEeCCEE----EEEE-CCCeEEEEEhH
Confidence 48999999999999995333222211 2222 23477777763
No 391
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=27.09 E-value=44 Score=33.57 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=33.6
Q ss_pred HcCCHHHHHHHHHHHHcCCCChh-------h-HHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 227 RTGKYEVAREKFESVLGSKPTPE-------E-SSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 227 k~grYeEAI~~Ye~AL~i~P~~~-------e-~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
=+|+|..||..-+. ++.+.. . ....+|..+.||..++++.+||..+
T Consensus 134 LLGDY~~Alk~l~~---idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f 187 (404)
T PF10255_consen 134 LLGDYYQALKVLEN---IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTF 187 (404)
T ss_pred hccCHHHHHHHhhc---cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999876432 333321 1 1345999999999999999999875
No 392
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=26.22 E-value=1e+02 Score=30.90 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=27.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEES 251 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~ 251 (276)
.+.+|++.....+|++|+..++.|....|++.++
T Consensus 312 ~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i 345 (372)
T KOG0546|consen 312 HYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAI 345 (372)
T ss_pred HHHHHhHHHhhhchhhhHHHHHHhhccCcchHHH
Confidence 4577888888888888888888888888888655
No 393
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.17 E-value=2.7e+02 Score=30.95 Aligned_cols=107 Identities=16% Similarity=0.140 Sum_probs=57.9
Q ss_pred EEEeecccCCcceecccchhHHHHh-hcccCceEEEEee------c-CCCcccccccc--hHHHHHHhhcCCCcchhHHH
Q 023871 130 VLATSAVFGTEIWPAAEYGRTMYTI-RQRVGPLLMKMQK------R-YGKMEQTGELS--EKEIIRAERNSGVISNRVRE 199 (276)
Q Consensus 130 l~~~Sa~fGdevw~a~~~g~~~~ai-r~r~gpv~L~l~R------~-~~~~~~~~~~~--e~~~~~~~r~~G~i~~al~E 199 (276)
|+|++.. -.|+|...+. +-+..| ....++..+.-.+ . .+-|.- ..++ ++|+...- ...+++.++.=
T Consensus 254 lIa~~~~-~veI~s~~~~-qlvQSI~~~~~~~~l~s~~~~i~~~~~~s~v~~L-~p~~~~~~qi~~lL-~~k~fe~ai~L 329 (877)
T KOG2063|consen 254 LIALLDR-SVEIRSKLDG-QLVQSITPLSNGRSLLSAHNGIIFVASLSNVWIL-VPVSNFEKQIQDLL-QEKSFEEAISL 329 (877)
T ss_pred EEEEccc-cEEEEeccCH-HHhhccccccccceeeecCCcEEEEEeccceEEE-EeccchHHHHHHHH-HhhhHHHHHHH
Confidence 5666665 5689998886 444445 3333333332222 2 222221 1222 45543222 22237777777
Q ss_pred HHHHH---HhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023871 200 IQMQN---YMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVL 242 (276)
Q Consensus 200 iq~~n---Ykk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL 242 (276)
++..+ =+++..+...+ ....|..+|.+|+|++|...|++.-
T Consensus 330 ~e~~~~~~p~~~~~i~~~~--~l~~a~~lf~q~~f~ea~~~F~~~~ 373 (877)
T KOG2063|consen 330 AEILDSPNPKEKRQISCIK--ILIDAFELFLQKQFEEAMSLFEKSE 373 (877)
T ss_pred HhccCCCChHHHHHHHHHH--HHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 77633 23333332222 2233899999999999999998764
No 394
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=26.13 E-value=83 Score=26.81 Aligned_cols=37 Identities=35% Similarity=0.539 Sum_probs=24.3
Q ss_pred eEEEEecCcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeec
Q 023871 86 EYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSA 135 (276)
Q Consensus 86 ~y~V~l~KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa 135 (276)
.|+|+|. ..||...++.|.+|..= .+++||.|.+=-.
T Consensus 23 g~~vtI~---------~~dG~~v~~~IP~GpeL----iV~eG~~V~~dqp 59 (118)
T PF01333_consen 23 GYEVTIE---------TSDGETVVETIPAGPEL----IVSEGQSVKADQP 59 (118)
T ss_dssp EEEEEEE---------TTTSEEEEEEEESSS-B----S--TT-EETTT-B
T ss_pred CEEEEEE---------CCCCCEEEEecCCCCeE----EEcCCCEEecCCc
Confidence 3888774 36888999999999773 4888999876333
No 395
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=25.51 E-value=1.6e+02 Score=26.88 Aligned_cols=44 Identities=25% Similarity=0.241 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh--hhH---HHHHHHHh
Q 023871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTP--EES---SVASYNVA 259 (276)
Q Consensus 216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~--~e~---a~A~YN~A 259 (276)
++.+..+.-..+.+||++.+....+++.++|+- .|. ++|+-|.-
T Consensus 2 e~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i 50 (236)
T PF00244_consen 2 EELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVI 50 (236)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcc
Confidence 455667777789999999999999999887753 332 55555543
No 396
>COG4014 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.85 E-value=55 Score=26.86 Aligned_cols=56 Identities=25% Similarity=0.294 Sum_probs=34.3
Q ss_pred cccCCEEEEeecccCCcceecccchhHHHHhh-cccCceEEEEeecCCCc-ccccccchHHHHHHhhc
Q 023871 124 FQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR-QRVGPLLMKMQKRYGKM-EQTGELSEKEIIRAERN 189 (276)
Q Consensus 124 i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air-~r~gpv~L~l~R~~~~~-~~~~~~~e~~~~~~~r~ 189 (276)
..|||-|.+|.. ...|++ +.|+ ...|.+-.+|+-..==. ..-.+..+|..+|++|.
T Consensus 9 ~~VG~avrYvnT---------gTvgrV-~dIkkdEdG~~WV~LdstdLwYre~~le~vdKse~ke~re 66 (97)
T COG4014 9 DKVGDAVRYVNT---------GTVGRV-VDIKKDEDGDIWVVLDSTDLWYREHYLEVVDKSEIKEERE 66 (97)
T ss_pred hhhcceEEEeec---------CceeeE-EEEEeecCCceEEEEecCCceecccceeeecchhhHHHhh
Confidence 348888999863 234443 3455 55888888877521101 23346788988887773
No 397
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=24.69 E-value=49 Score=27.69 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=25.6
Q ss_pred CcccCCEEEEeecccCCcceeccc-chhHHHHhhcccCceEEEEeec
Q 023871 123 MFQVGDKVLATSAVFGTEIWPAAE-YGRTMYTIRQRVGPLLMKMQKR 168 (276)
Q Consensus 123 ~i~vGD~l~~~Sa~fGdevw~a~~-~g~~~~air~r~gpv~L~l~R~ 168 (276)
.+++||.|+-++.++|. |-..++ ... |......+.+++.|.
T Consensus 36 sLk~GD~VvT~GGi~G~-V~~I~~~~~~----v~le~~gv~i~v~r~ 77 (113)
T PRK06531 36 AIQKGDEVVTIGGLYGT-VDEVDTEAKT----IVLDVDGVYLTFELA 77 (113)
T ss_pred hcCCCCEEEECCCcEEE-EEEEecCCCE----EEEEECCEEEEEEhh
Confidence 48999999999999995 333332 111 121223477777774
No 398
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=23.81 E-value=1.9e+02 Score=32.23 Aligned_cols=70 Identities=23% Similarity=0.311 Sum_probs=48.4
Q ss_pred HHHhhHHHHH----HHHHHHHHHHHHHHH----cC---CHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHH
Q 023871 203 QNYMKKKEQK----ERREQDLREGLQLYR----TG---KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLL 271 (276)
Q Consensus 203 ~nYkk~Kelk----kqae~~~~eGnaLfk----~g---rYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eA 271 (276)
-+|+|..+-- +-.|..++-|.++-. .| .+++||..|++--....-.-| |--+|.+|-.+|+++|=
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 571 (932)
T PRK13184 496 IFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLE----YLGKALVYQRLGEYNEE 571 (932)
T ss_pred HHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchH----HHhHHHHHHHhhhHHHH
Confidence 3455554442 234556777877732 23 589999999987765443322 77899999999999999
Q ss_pred HhhhC
Q 023871 272 LALIE 276 (276)
Q Consensus 272 I~aLE 276 (276)
|.+|+
T Consensus 572 ~~~~~ 576 (932)
T PRK13184 572 IKSLL 576 (932)
T ss_pred HHHHH
Confidence 99875
No 399
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=23.55 E-value=1.6e+02 Score=21.43 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHHHHcCCCChhh
Q 023871 229 GKYEVAREKFESVLGSKPTPEE 250 (276)
Q Consensus 229 grYeEAI~~Ye~AL~i~P~~~e 250 (276)
.-|.+|+..+..++..+|+...
T Consensus 26 ~~Y~~ai~~l~~~~~~~~~~~~ 47 (69)
T PF04212_consen 26 ELYKEAIEYLMQALKSESNPER 47 (69)
T ss_dssp HHHHHHHHHHHHHHHHSTTHHH
T ss_pred HHHHHHHHHHHHHhccCCCHHH
Confidence 3578999999999988887643
No 400
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=23.36 E-value=56 Score=18.97 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=13.4
Q ss_pred HHHHhHHHHhcCChhHHHhhh
Q 023871 255 SYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 255 ~YN~AcCyaKLgq~~eAI~aL 275 (276)
|..+=.+|.+.|++++|.+.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~ 23 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVF 23 (31)
T ss_pred HHHHHHHHHccchHHHHHHHH
Confidence 445556777777777776643
No 401
>TIGR00523 eIF-1A eukaryotic/archaeal initiation factor 1A. Recommended nomenclature: eIF-1A for eukaryotes, aIF-1A for Archaea. Also called eIF-4C
Probab=22.56 E-value=2.2e+02 Score=23.19 Aligned_cols=46 Identities=28% Similarity=0.182 Sum_probs=31.7
Q ss_pred ceEEEEecCcce--eEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEE
Q 023871 85 EEYEVEIEQPYG--LKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132 (276)
Q Consensus 85 ~~y~V~l~KPLG--l~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~ 132 (276)
++....+.+.+| +.--+..||..++..|...= -+.--|..||.|+-
T Consensus 19 ~e~~g~V~~~lG~~~~~V~~~dG~~~la~i~GK~--Rk~iwI~~GD~VlV 66 (99)
T TIGR00523 19 GEILGVIEQMLGAGRVKVRCLDGKTRLGRIPGKL--KKRIWIREGDVVIV 66 (99)
T ss_pred CEEEEEEEEEcCCCEEEEEeCCCCEEEEEEchhh--cccEEecCCCEEEE
Confidence 567777777777 33334568888888887442 24446899999986
No 402
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=22.27 E-value=1.8e+02 Score=25.05 Aligned_cols=60 Identities=15% Similarity=0.101 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh------hhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTP------EESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~------~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.+.++..++.+.+.|+.++|...-.-+= .+-+. -......-+.|.-+...|++++|-.+|
T Consensus 75 ~~~ai~~a~~~l~~g~~~~A~~~L~~~~-~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL 140 (155)
T PF10938_consen 75 KKAAIKTANELLKKGDKQAAREILKLAG-SEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAAL 140 (155)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHTT--EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhc-ccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3456689999999999999998766543 22221 112345678999999999999998876
No 403
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=22.06 E-value=86 Score=35.27 Aligned_cols=51 Identities=14% Similarity=0.180 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH---HHHHHHHhHHHHhcCCh
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEES---SVASYNVACCYSKLNQV 268 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~---a~A~YN~AcCyaKLgq~ 268 (276)
.+-.|.=.-..|+|.+|+..|..|+++--...++ +.|+-.+|+|...++..
T Consensus 245 ~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~ 298 (1185)
T PF08626_consen 245 QKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWL 298 (1185)
T ss_pred hhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhcc
Confidence 3467777788999999999999999654332222 78899999998877654
No 404
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=21.95 E-value=2.6e+02 Score=30.71 Aligned_cols=59 Identities=17% Similarity=0.135 Sum_probs=35.9
Q ss_pred HHHhhcCCCcchhHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh
Q 023871 184 IRAERNSGVISNRVREIQM--QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTP 248 (276)
Q Consensus 184 ~~~~r~~G~i~~al~Eiq~--~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~ 248 (276)
+.-||-.|+++++++-..+ ..|--.-++ |...|.-.-+.++.+.|-+.|.+-+..||+.
T Consensus 658 ~~~er~ld~~eeA~rllEe~lk~fp~f~Kl------~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ 718 (913)
T KOG0495|consen 658 ANLERYLDNVEEALRLLEEALKSFPDFHKL------WLMLGQIEEQMENIEMAREAYLQGTKKCPNS 718 (913)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHhCCchHHH------HHHHhHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 4678888998888877744 112211111 2333544555667777777777777777765
No 405
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.87 E-value=1.5e+02 Score=30.82 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=31.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023871 203 QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLG 243 (276)
Q Consensus 203 ~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~ 243 (276)
+-|+..++.-+.+=..++.|+-.-+.+++++|+..|+++|.
T Consensus 10 ~~~a~Ir~ayk~A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~ 50 (560)
T KOG2709|consen 10 PDTAQIRAAYKGAYASVEQGLCYDEVNDWENALAMYEKGLN 50 (560)
T ss_pred hHHHHHHHHHHHHHHHHHhhcchhhhcCHHHHHHHHHHHHH
Confidence 34555555555555556888888899999999999999993
No 406
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=21.31 E-value=1.2e+02 Score=25.96 Aligned_cols=43 Identities=19% Similarity=0.107 Sum_probs=30.5
Q ss_pred ecCcceeEEeee-----CCC---CeEEEEeCCCCCcccccC---------cccCCEEEEe
Q 023871 91 IEQPYGLKFAKG-----RDG---GTYIDAIAPGGSADKTGM---------FQVGDKVLAT 133 (276)
Q Consensus 91 l~KPLGl~f~e~-----~dG---gv~V~~v~~ggnA~k~G~---------i~vGD~l~~~ 133 (276)
+.|+-|++++.+ +|| .||...+.|+-+-..=.. ++.||.|.-+
T Consensus 6 ~~~~~~~~~~~~~~~v~~~g~~v~v~~~~~~~~~~~~~f~~~~~~~P~I~v~~Gd~V~v~ 65 (148)
T TIGR03095 6 NETDPGVQVSVSGSTIYYNNSTTLVVAAGPMPGPSMYSFEIHDLKNPTIVIPEGVTVHFT 65 (148)
T ss_pred cccCCCcEEecCCCEEEEcCCEEEEEEEEcCCCCCceeEEecCCCCCEEEEcCCCEEEEE
Confidence 457778777763 456 678888888887754432 5899998873
No 407
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=20.82 E-value=1.8e+02 Score=27.73 Aligned_cols=20 Identities=15% Similarity=0.411 Sum_probs=13.5
Q ss_pred ecCcceeEEeeeCCCCeEEEEe
Q 023871 91 IEQPYGLKFAKGRDGGTYIDAI 112 (276)
Q Consensus 91 l~KPLGl~f~e~~dGgv~V~~v 112 (276)
|.+|.+|.|.+ +|.+||.+-
T Consensus 13 ~~~P~~ia~d~--~G~l~V~e~ 32 (367)
T TIGR02604 13 LRNPIAVCFDE--RGRLWVAEG 32 (367)
T ss_pred cCCCceeeECC--CCCEEEEeC
Confidence 56777777744 677777765
No 408
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=20.66 E-value=33 Score=26.66 Aligned_cols=17 Identities=29% Similarity=0.710 Sum_probs=0.0
Q ss_pred CcccCCEEEEeecccCC
Q 023871 123 MFQVGDKVLATSAVFGT 139 (276)
Q Consensus 123 ~i~vGD~l~~~Sa~fGd 139 (276)
.+++||.|+-+|..+|.
T Consensus 36 ~Lk~Gd~VvT~gGi~G~ 52 (82)
T PF02699_consen 36 SLKPGDEVVTIGGIYGT 52 (82)
T ss_dssp -----------------
T ss_pred cCCCCCEEEECCcEEEE
Confidence 48999999999999993
No 409
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=20.62 E-value=1.8e+02 Score=25.00 Aligned_cols=25 Identities=28% Similarity=0.211 Sum_probs=13.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcCCC
Q 023871 222 GLQLYRTGKYEVAREKFESVLGSKP 246 (276)
Q Consensus 222 GnaLfk~grYeEAI~~Ye~AL~i~P 246 (276)
++.+..+|+.++|-....++..+=|
T Consensus 151 a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 151 ALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 5555555555555555555555555
No 410
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=20.61 E-value=1.8e+02 Score=29.42 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=30.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 023871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNV 258 (276)
Q Consensus 220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~ 258 (276)
.+|--|.++|+-+||-+.|++|+++.++..|..-+.-.+
T Consensus 370 ~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~ 408 (415)
T COG4941 370 ARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRL 408 (415)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 455667799999999999999999999988754443333
No 411
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.27 E-value=2.4e+02 Score=27.32 Aligned_cols=9 Identities=0% Similarity=-0.093 Sum_probs=4.3
Q ss_pred ChhHHHhhh
Q 023871 267 QVPLLLALI 275 (276)
Q Consensus 267 q~~eAI~aL 275 (276)
+.++|+.+|
T Consensus 88 ~~~eAv~cL 96 (288)
T KOG1586|consen 88 DPEEAVNCL 96 (288)
T ss_pred ChHHHHHHH
Confidence 444444444
No 412
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=20.07 E-value=2.4e+02 Score=22.63 Aligned_cols=35 Identities=20% Similarity=0.093 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC
Q 023871 211 QKERREQDLREGLQLYRTGKYEVAREKFESVLGSK 245 (276)
Q Consensus 211 lkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~ 245 (276)
.-..+..++++|...+..|+.+.|.-.|-+.+.+-
T Consensus 34 y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~ 68 (115)
T PF08969_consen 34 YLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLV 68 (115)
T ss_dssp HHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 44455666788889999999999999999988543
Done!