Query 023871
Match_columns 276
No_of_seqs 178 out of 243
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 14:11:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023871.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023871hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gcn_A Protein STI-1; structur 99.0 7.9E-10 2.7E-14 85.8 7.7 58 215-275 8-65 (127)
2 4gco_A Protein STI-1; structur 99.0 6.4E-10 2.2E-14 86.7 7.2 80 189-276 25-105 (126)
3 2hr2_A Hypothetical protein; a 99.0 5.4E-10 1.8E-14 95.2 7.3 65 211-275 7-80 (159)
4 3gyz_A Chaperone protein IPGC; 98.9 1.6E-09 5.5E-14 88.6 6.8 84 185-276 44-128 (151)
5 2hr2_A Hypothetical protein; a 98.9 2.5E-09 8.4E-14 91.1 7.6 81 188-276 22-126 (159)
6 4gco_A Protein STI-1; structur 98.9 4.7E-09 1.6E-13 81.7 7.2 58 215-275 13-70 (126)
7 3k9i_A BH0479 protein; putativ 98.8 6.8E-09 2.3E-13 78.2 7.0 79 189-275 2-84 (117)
8 2l6j_A TPR repeat-containing p 98.8 7.9E-09 2.7E-13 74.5 6.7 83 188-275 15-101 (111)
9 3upv_A Heat shock protein STI1 98.8 9.9E-09 3.4E-13 77.1 7.2 81 187-275 14-95 (126)
10 3upv_A Heat shock protein STI1 98.7 3.7E-08 1.3E-12 73.9 8.4 59 214-275 3-61 (126)
11 3rkv_A Putative peptidylprolyl 98.7 5.6E-08 1.9E-12 76.4 9.3 81 188-276 22-121 (162)
12 3vtx_A MAMA; tetratricopeptide 98.7 4.8E-08 1.7E-12 77.1 8.9 56 217-275 109-164 (184)
13 2xcb_A PCRH, regulatory protei 98.7 3.7E-08 1.3E-12 76.5 8.0 83 186-276 27-110 (142)
14 2vgx_A Chaperone SYCD; alterna 98.7 3.6E-08 1.2E-12 78.5 8.0 84 185-276 29-113 (148)
15 4gcn_A Protein STI-1; structur 98.7 5.3E-09 1.8E-13 81.1 3.1 82 189-275 20-106 (127)
16 3rkv_A Putative peptidylprolyl 98.7 2.9E-08 1E-12 78.0 7.3 63 213-275 9-86 (162)
17 3sz7_A HSC70 cochaperone (SGT) 98.7 5.3E-08 1.8E-12 76.7 8.3 83 185-275 19-102 (164)
18 3ma5_A Tetratricopeptide repea 98.7 3.4E-08 1.2E-12 73.3 6.5 58 216-276 8-65 (100)
19 3gyz_A Chaperone protein IPGC; 98.7 1.4E-08 4.8E-13 83.0 4.4 70 203-275 23-93 (151)
20 2qg1_A Multiple PDZ domain pro 98.7 7.6E-08 2.6E-12 72.0 7.8 82 84-169 3-89 (92)
21 4ga2_A E3 SUMO-protein ligase 98.6 4.1E-08 1.4E-12 77.9 6.4 67 204-273 53-120 (150)
22 2xev_A YBGF; tetratricopeptide 98.6 5.9E-08 2E-12 71.9 6.7 87 185-276 10-100 (129)
23 2vwr_A Ligand of NUMB protein 98.6 1.2E-07 4E-12 71.5 8.3 82 84-169 2-89 (95)
24 1hxi_A PEX5, peroxisome target 98.6 5.7E-08 1.9E-12 74.8 6.5 84 185-276 25-109 (121)
25 3sz7_A HSC70 cochaperone (SGT) 98.6 8.5E-08 2.9E-12 75.5 7.1 59 214-275 10-68 (164)
26 2kck_A TPR repeat; tetratricop 98.6 1.8E-07 6.3E-12 66.2 7.6 84 184-275 13-100 (112)
27 2jil_A GRIP1 protein, glutamat 98.6 2E-07 6.9E-12 70.3 8.1 80 85-170 3-93 (97)
28 2dba_A Smooth muscle cell asso 98.6 1.8E-07 6.1E-12 70.0 7.7 84 184-275 35-122 (148)
29 3q49_B STIP1 homology and U bo 98.6 2.3E-07 7.7E-12 69.4 8.2 84 184-275 16-100 (137)
30 2qkv_A Inactivation-NO-after-p 98.5 2E-07 6.7E-12 71.0 7.6 84 81-169 4-91 (96)
31 1n7e_A AMPA receptor interacti 98.5 2.7E-07 9.3E-12 69.9 8.2 81 85-169 5-90 (97)
32 2kc7_A BFR218_protein; tetratr 98.5 1.1E-07 3.6E-12 68.5 5.6 54 219-275 4-58 (99)
33 1wha_A KIAA0147 protein, scrib 98.5 4.9E-07 1.7E-11 69.5 9.7 84 83-170 5-99 (105)
34 2yhc_A BAMD, UPF0169 lipoprote 98.5 2.7E-07 9.3E-12 76.8 8.7 89 187-275 106-207 (225)
35 2yt7_A Amyloid beta A4 precurs 98.5 7.5E-07 2.6E-11 68.3 10.5 80 86-169 10-99 (101)
36 4ga2_A E3 SUMO-protein ligase 98.5 8.3E-08 2.9E-12 76.1 5.2 79 189-275 9-88 (150)
37 2ejy_A 55 kDa erythrocyte memb 98.5 2.8E-07 9.7E-12 71.7 7.8 78 87-168 14-95 (97)
38 2vgx_A Chaperone SYCD; alterna 98.5 1.3E-07 4.3E-12 75.3 5.8 68 205-275 10-78 (148)
39 2iwn_A Multiple PDZ domain pro 98.5 3.9E-07 1.3E-11 68.0 8.0 81 84-168 3-92 (97)
40 2dba_A Smooth muscle cell asso 98.5 1.9E-07 6.4E-12 69.8 6.2 61 215-275 28-88 (148)
41 3q49_B STIP1 homology and U bo 98.5 2.5E-07 8.5E-12 69.2 6.7 58 215-275 9-66 (137)
42 2la8_A Inactivation-NO-after-p 98.5 9.8E-07 3.3E-11 69.0 10.3 81 85-170 2-86 (106)
43 1q7x_A PDZ2B domain of PTP-BAS 98.5 6.5E-07 2.2E-11 69.0 8.9 85 82-170 6-103 (108)
44 2opg_A Multiple PDZ domain pro 98.5 8E-07 2.7E-11 67.1 9.2 80 85-170 4-91 (98)
45 1m5z_A GRIP, AMPA receptor int 98.5 7.1E-07 2.4E-11 66.5 8.7 81 83-168 4-90 (91)
46 3vtx_A MAMA; tetratricopeptide 98.5 2E-07 6.9E-12 73.5 6.0 55 218-275 8-62 (184)
47 2l6j_A TPR repeat-containing p 98.5 2.5E-07 8.7E-12 66.5 6.0 58 215-275 4-61 (111)
48 1hxi_A PEX5, peroxisome target 98.5 2.4E-07 8.2E-12 71.3 6.3 57 217-276 19-75 (121)
49 3i4w_A Disks large homolog 4; 98.5 5.5E-07 1.9E-11 68.5 8.2 83 82-168 8-94 (104)
50 3cbz_A Dishevelled-2; PDZ doma 98.5 5.5E-07 1.9E-11 70.1 8.4 82 85-170 5-97 (108)
51 2xcb_A PCRH, regulatory protei 98.5 3.5E-07 1.2E-11 70.9 7.2 58 215-275 18-75 (142)
52 2dmz_A INAD-like protein; PDZ 98.5 6.2E-07 2.1E-11 71.3 8.7 85 82-170 12-107 (129)
53 1elw_A TPR1-domain of HOP; HOP 98.5 5.7E-07 1.9E-11 64.0 7.6 83 185-275 12-95 (118)
54 1i16_A Interleukin 16, LCF; cy 98.5 1.2E-06 4.1E-11 70.5 10.3 84 82-169 26-118 (130)
55 1na3_A Designed protein CTPR2; 98.5 4.1E-07 1.4E-11 63.4 6.7 56 217-275 11-66 (91)
56 3urz_A Uncharacterized protein 98.4 6.5E-07 2.2E-11 74.0 8.9 81 188-276 15-112 (208)
57 1wf8_A Neurabin-I; PDZ domain, 98.4 5.8E-07 2E-11 69.3 8.0 85 82-170 6-101 (107)
58 2xev_A YBGF; tetratricopeptide 98.4 3.3E-07 1.1E-11 67.8 6.4 58 218-275 5-62 (129)
59 1kwa_A Hcask/LIN-2 protein; PD 98.4 3.7E-07 1.3E-11 68.7 6.7 76 88-169 4-85 (88)
60 4i17_A Hypothetical protein; T 98.4 4.1E-07 1.4E-11 74.4 7.5 82 186-275 16-99 (228)
61 3gge_A PDZ domain-containing p 98.4 3.8E-07 1.3E-11 72.1 7.0 79 85-169 5-90 (95)
62 2fbn_A 70 kDa peptidylprolyl i 98.4 5.6E-07 1.9E-11 72.9 8.2 63 213-275 36-111 (198)
63 1uhp_A Hypothetical protein KI 98.4 1E-06 3.5E-11 67.9 9.3 86 83-172 6-104 (107)
64 2i1n_A Discs, large homolog 3; 98.4 9.9E-07 3.4E-11 67.2 9.1 84 84-171 3-96 (102)
65 3b76_A E3 ubiquitin-protein li 98.4 7.4E-07 2.5E-11 71.2 8.7 87 79-169 18-113 (118)
66 2fcf_A Multiple PDZ domain pro 98.4 9E-07 3.1E-11 67.4 8.7 79 85-169 4-99 (103)
67 1wi2_A Riken cDNA 2700099C19; 98.4 1E-06 3.5E-11 67.7 9.1 84 83-172 13-102 (104)
68 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 6.4E-07 2.2E-11 84.1 9.1 84 189-275 280-374 (457)
69 2jre_A C60-1 PDZ domain peptid 98.4 9.1E-07 3.1E-11 68.0 8.2 85 81-169 8-104 (108)
70 4gyw_A UDP-N-acetylglucosamine 98.4 4.4E-07 1.5E-11 91.8 8.1 70 203-275 64-134 (723)
71 1d5g_A Human phosphatase HPTP1 98.4 1.4E-06 4.6E-11 65.6 8.8 79 85-169 5-93 (96)
72 2r4h_A Membrane-associated gua 98.4 1E-06 3.6E-11 68.8 8.4 86 79-168 18-108 (112)
73 2he4_A Na(+)/H(+) exchange reg 98.4 1.3E-06 4.4E-11 65.1 8.5 78 87-171 6-89 (90)
74 2lni_A Stress-induced-phosphop 98.4 5.6E-07 1.9E-11 65.8 6.4 84 185-276 24-108 (133)
75 1p5q_A FKBP52, FK506-binding p 98.4 3.7E-07 1.3E-11 82.0 6.6 85 189-276 159-254 (336)
76 1a17_A Serine/threonine protei 98.4 1.1E-06 3.8E-11 66.8 8.3 81 187-275 23-104 (166)
77 2fbn_A 70 kDa peptidylprolyl i 98.4 3.3E-06 1.1E-10 68.3 11.5 82 189-275 50-145 (198)
78 2if4_A ATFKBP42; FKBP-like, al 98.4 6.6E-07 2.3E-11 80.6 7.8 85 189-276 191-288 (338)
79 2kat_A Uncharacterized protein 98.4 6.3E-07 2.2E-11 66.5 6.4 58 216-276 20-77 (115)
80 1ueq_A Membrane associated gua 98.4 1.3E-06 4.3E-11 69.4 8.4 84 82-169 16-106 (123)
81 1hh8_A P67PHOX, NCF-2, neutrop 98.4 1.1E-06 3.8E-11 70.4 8.2 86 185-275 45-144 (213)
82 2ehr_A INAD-like protein; PDZ 98.4 3.1E-06 1.1E-10 66.2 10.5 84 85-172 15-113 (117)
83 1elw_A TPR1-domain of HOP; HOP 98.4 6.8E-07 2.3E-11 63.6 6.1 59 214-275 3-61 (118)
84 2dlu_A INAD-like protein; PDZ 98.4 2.4E-06 8.3E-11 66.1 9.7 82 85-170 15-99 (111)
85 2lni_A Stress-induced-phosphop 98.4 8.2E-07 2.8E-11 64.9 6.7 57 216-275 17-73 (133)
86 2awx_A Synapse associated prot 98.4 1.5E-06 5E-11 66.8 8.4 81 86-170 4-94 (105)
87 2d90_A PDZ domain containing p 98.4 1.6E-06 5.4E-11 66.2 8.4 82 85-171 6-91 (102)
88 1ihg_A Cyclophilin 40; ppiase 98.4 1.9E-06 6.5E-11 79.3 10.4 80 189-276 235-331 (370)
89 1qav_A Alpha-1 syntrophin (res 98.4 1.1E-06 3.8E-11 65.5 7.3 80 85-168 4-89 (90)
90 2pa1_A PDZ and LIM domain prot 98.3 1.3E-06 4.5E-11 64.7 7.6 75 87-168 4-84 (87)
91 1v62_A KIAA1719 protein; struc 98.3 8.8E-07 3E-11 69.9 6.9 81 86-170 16-103 (117)
92 1hh8_A P67PHOX, NCF-2, neutrop 98.3 5.2E-07 1.8E-11 72.3 5.7 79 187-275 16-94 (213)
93 2o2t_A Multiple PDZ domain pro 98.3 5E-07 1.7E-11 70.6 5.3 83 84-169 19-110 (117)
94 2vyi_A SGTA protein; chaperone 98.3 2.1E-06 7.1E-11 61.9 8.2 83 185-275 20-103 (131)
95 1va8_A Maguk P55 subfamily mem 98.3 1.7E-06 5.8E-11 67.7 8.3 80 85-169 25-108 (113)
96 1um1_A KIAA1849 protein, RSGI 98.3 2.5E-06 8.7E-11 65.9 9.2 80 85-168 8-95 (110)
97 2d92_A INAD-like protein; PDZ 98.3 1.6E-06 5.4E-11 67.3 8.0 82 85-170 15-106 (108)
98 2db5_A INAD-like protein; PDZ 98.3 1.1E-06 3.8E-11 69.9 7.3 85 85-172 25-118 (128)
99 2jik_A Synaptojanin-2 binding 98.3 2.6E-06 9E-11 64.7 9.0 81 85-169 7-97 (101)
100 2w4f_A Protein LAP4; structura 98.3 1.8E-06 6.1E-11 64.9 8.0 80 84-168 2-92 (97)
101 1elr_A TPR2A-domain of HOP; HO 98.3 1.3E-06 4.5E-11 63.2 6.9 58 215-275 4-61 (131)
102 2pl2_A Hypothetical conserved 98.3 5.3E-07 1.8E-11 75.1 5.4 80 189-276 130-209 (217)
103 2dm8_A INAD-like protein; PDZ 98.3 1.2E-06 4.1E-11 68.2 7.1 84 85-172 17-106 (116)
104 3qky_A Outer membrane assembly 98.3 1.1E-06 3.9E-11 73.6 7.3 60 216-275 16-75 (261)
105 2eno_A Synaptojanin-2-binding 98.3 2.6E-06 9E-11 67.0 8.9 86 81-170 13-108 (120)
106 2byg_A Channel associated prot 98.3 2.2E-06 7.7E-11 67.8 8.5 82 83-168 22-113 (117)
107 1qau_A Neuronal nitric oxide s 98.3 2.8E-06 9.7E-11 65.6 8.6 80 85-170 1-88 (112)
108 2koj_A Partitioning defective 98.3 2.9E-06 9.8E-11 65.5 8.6 82 83-170 9-102 (111)
109 2fe5_A Presynaptic protein SAP 98.3 3E-06 1E-10 63.3 8.4 80 85-168 3-92 (94)
110 2fne_A Multiple PDZ domain pro 98.3 1.5E-06 5.3E-11 68.9 7.2 80 85-168 25-112 (117)
111 2kck_A TPR repeat; tetratricop 98.3 7.2E-07 2.5E-11 63.1 4.7 55 218-275 9-63 (112)
112 2yhc_A BAMD, UPF0169 lipoprote 98.3 1.1E-06 3.7E-11 73.2 6.5 59 217-275 6-64 (225)
113 1ihj_A INAD; intermolecular di 98.3 1.9E-06 6.5E-11 65.0 7.3 78 87-168 7-96 (98)
114 1elr_A TPR2A-domain of HOP; HO 98.3 1E-06 3.5E-11 63.8 5.5 86 185-275 12-102 (131)
115 2eeh_A PDZ domain-containing p 98.3 2.6E-06 8.9E-11 64.9 8.0 78 87-170 12-95 (100)
116 2e7k_A Maguk P55 subfamily mem 98.3 9.7E-07 3.3E-11 66.8 5.6 77 87-169 8-88 (91)
117 1a17_A Serine/threonine protei 98.3 2.3E-06 7.8E-11 65.1 7.7 60 213-275 11-70 (166)
118 1wg6_A Hypothetical protein (r 98.3 2.4E-06 8.4E-11 68.5 8.1 82 85-170 25-123 (127)
119 2djt_A Unnamed protein product 98.3 2.1E-06 7.2E-11 65.6 7.4 82 83-168 9-97 (104)
120 2daz_A INAD-like protein; PDZ 98.3 2.6E-06 8.9E-11 67.5 8.1 84 83-170 23-112 (124)
121 1uep_A Membrane associated gua 98.3 1.9E-06 6.5E-11 66.1 7.1 83 83-169 7-96 (103)
122 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 1E-06 3.5E-11 82.7 6.7 71 205-275 257-340 (457)
123 1rgw_A ZAsp protein; PDZ, cyph 98.3 1.6E-06 5.5E-11 63.6 6.4 78 86-168 2-83 (85)
124 3axa_A Afadin, nectin-3, prote 98.3 3.4E-06 1.2E-10 64.7 8.4 85 82-170 8-99 (106)
125 2g5m_B Neurabin-2; spinophilin 98.3 1.7E-06 5.7E-11 67.2 6.7 83 84-170 3-96 (113)
126 1tp5_A Presynaptic density pro 98.3 2.4E-06 8.2E-11 66.9 7.6 86 81-170 10-99 (119)
127 1qqe_A Vesicular transport pro 98.3 3.1E-06 1.1E-10 73.5 9.1 80 191-275 132-222 (292)
128 4i17_A Hypothetical protein; T 98.3 1.5E-06 5.2E-11 71.0 6.7 57 216-275 8-65 (228)
129 3ro3_A PINS homolog, G-protein 98.3 2.6E-06 8.8E-11 63.1 7.3 91 185-275 17-112 (164)
130 3uq3_A Heat shock protein STI1 98.3 4.3E-06 1.5E-10 67.4 9.2 57 216-275 140-196 (258)
131 1na0_A Designed protein CTPR3; 98.2 4.1E-06 1.4E-10 59.9 8.1 84 184-275 16-100 (125)
132 1mfg_A ERB-B2 interacting prot 98.2 6.3E-06 2.2E-10 61.9 9.4 79 85-169 3-93 (95)
133 2q9v_A Membrane-associated gua 98.2 2.7E-06 9.2E-11 63.2 7.2 80 85-168 2-88 (90)
134 3fp2_A TPR repeat-containing p 98.2 6.5E-07 2.2E-11 80.8 4.5 80 188-275 36-116 (537)
135 2uzc_A Human pdlim5, PDZ and L 98.2 2.6E-06 8.9E-11 63.0 6.9 78 86-168 4-85 (88)
136 3egg_C Spinophilin; PP1, serin 98.2 2.7E-06 9.3E-11 72.3 7.9 81 83-167 78-169 (170)
137 1x5q_A LAP4 protein; PDZ domai 98.2 8.2E-06 2.8E-10 63.0 9.9 82 82-168 12-104 (110)
138 2vyi_A SGTA protein; chaperone 98.2 3.6E-06 1.2E-10 60.6 7.4 59 214-275 11-69 (131)
139 3qky_A Outer membrane assembly 98.2 1.9E-06 6.6E-11 72.2 6.7 90 185-275 23-120 (261)
140 1zu2_A Mitochondrial import re 98.2 6.5E-07 2.2E-11 76.1 3.9 70 203-275 23-114 (158)
141 1p5q_A FKBP52, FK506-binding p 98.2 2.2E-06 7.4E-11 77.0 7.4 72 204-275 135-219 (336)
142 2pl2_A Hypothetical conserved 98.2 2.5E-06 8.6E-11 70.9 7.2 57 216-275 6-62 (217)
143 2i04_A Membrane-associated gua 98.2 5.2E-06 1.8E-10 61.0 8.2 77 87-167 2-85 (85)
144 2edp_A Fragment, shroom family 98.2 1.8E-06 6.3E-11 66.0 5.9 83 82-169 8-94 (100)
145 2c2l_A CHIP, carboxy terminus 98.2 2E-06 6.8E-11 75.0 6.8 83 185-275 12-95 (281)
146 2c2l_A CHIP, carboxy terminus 98.2 3.6E-06 1.2E-10 73.4 8.4 57 216-275 5-61 (281)
147 3ieg_A DNAJ homolog subfamily 98.2 7E-06 2.4E-10 69.0 9.9 55 220-274 239-294 (359)
148 3urz_A Uncharacterized protein 98.2 1.4E-06 4.7E-11 72.1 5.4 58 215-275 4-77 (208)
149 4gyw_A UDP-N-acetylglucosamine 98.2 1.8E-06 6E-11 87.5 7.3 70 203-275 98-168 (723)
150 2iwq_A Multiple PDZ domain pro 98.2 5.3E-06 1.8E-10 66.4 8.7 79 85-169 24-119 (123)
151 2pkt_A PDZ and LIM domain prot 98.2 4.3E-06 1.5E-10 62.4 7.5 76 87-169 5-86 (91)
152 1whd_A RGS3, regulator of G-pr 98.2 1.9E-06 6.4E-11 66.0 5.6 85 80-171 10-97 (100)
153 1n7t_A 99-MER peptide of densi 98.2 4.7E-06 1.6E-10 63.6 7.9 83 81-169 7-101 (103)
154 2vz5_A TAX1-binding protein 3; 98.2 4.8E-06 1.6E-10 68.1 8.4 83 80-169 18-124 (139)
155 2dls_A PDZ-rhogef, RHO guanine 98.2 1E-05 3.5E-10 60.9 9.6 78 85-170 8-88 (93)
156 2kom_A Partitioning defective 98.2 6E-06 2E-10 65.6 8.6 82 83-168 28-119 (121)
157 1wao_1 Serine/threonine protei 98.2 2.5E-06 8.5E-11 81.0 7.4 79 189-275 18-97 (477)
158 3edt_B KLC 2, kinesin light ch 98.2 5.7E-06 1.9E-10 67.2 8.5 87 189-275 13-108 (283)
159 2kv8_A RGS12, regulator of G-p 98.2 3E-06 1E-10 62.2 6.2 78 86-170 3-83 (83)
160 2h6f_A Protein farnesyltransfe 98.2 2.1E-06 7.2E-11 80.0 6.5 55 218-275 169-223 (382)
161 1nf3_C PAR-6B; semi-CRIB motif 98.2 3.3E-06 1.1E-10 67.6 6.8 80 85-168 29-124 (128)
162 3u4t_A TPR repeat-containing p 98.2 9.6E-06 3.3E-10 66.7 9.7 56 218-276 77-132 (272)
163 3l4f_D SH3 and multiple ankyri 98.2 8.5E-06 2.9E-10 65.9 9.2 81 87-172 29-127 (132)
164 1wf7_A Enigma homologue protei 98.2 2.1E-06 7E-11 65.8 5.2 81 85-170 5-89 (103)
165 1um7_A Synapse-associated prot 98.2 2.5E-06 8.7E-11 65.7 5.8 84 82-169 12-99 (113)
166 3tsv_A Tight junction protein 98.2 7.6E-06 2.6E-10 65.6 8.7 70 92-168 38-111 (124)
167 1uit_A Human discs large 5 pro 98.2 4.5E-06 1.5E-10 65.3 7.2 80 88-172 22-104 (117)
168 1g9o_A NHE-RF; PDZ domain, com 98.2 6.4E-06 2.2E-10 61.2 7.7 78 88-170 6-87 (91)
169 2h2b_A Tight junction protein 98.2 1.2E-05 4E-10 61.6 9.3 82 82-169 4-97 (107)
170 3ro3_A PINS homolog, G-protein 98.1 1.3E-05 4.5E-10 59.2 9.1 91 185-275 57-152 (164)
171 1xnf_A Lipoprotein NLPI; TPR, 98.1 4.8E-06 1.6E-10 68.2 7.4 84 184-275 50-134 (275)
172 1wh1_A KIAA1095 protein; PDZ d 98.1 5.3E-06 1.8E-10 65.9 7.4 83 83-171 17-109 (124)
173 1wfv_A Membrane associated gua 98.1 1.4E-06 4.8E-11 66.1 3.9 85 83-171 9-98 (103)
174 2iwo_A Multiple PDZ domain pro 98.1 4.3E-06 1.5E-10 66.5 6.9 84 82-169 21-113 (120)
175 2h6f_A Protein farnesyltransfe 98.1 1.3E-06 4.3E-11 81.4 4.2 79 189-275 109-189 (382)
176 3hpk_A Protein interacting wit 98.1 1E-05 3.5E-10 64.0 8.8 82 85-170 19-106 (125)
177 2csj_A TJP2 protein; PDZ domai 98.1 1.2E-05 4E-10 63.0 9.0 84 80-169 9-104 (117)
178 3r68_A Na(+)/H(+) exchange reg 98.1 6.9E-06 2.4E-10 61.4 7.3 80 87-171 7-90 (95)
179 2gw1_A Mitochondrial precursor 98.1 4.2E-06 1.4E-10 74.6 7.1 81 187-275 16-96 (514)
180 3edt_B KLC 2, kinesin light ch 98.1 1.2E-05 4.2E-10 65.2 9.2 92 184-275 50-150 (283)
181 1xnf_A Lipoprotein NLPI; TPR, 98.1 4.4E-06 1.5E-10 68.5 6.6 79 189-275 17-100 (275)
182 2q3g_A PDZ and LIM domain prot 98.1 9E-06 3.1E-10 60.4 7.5 80 85-169 3-86 (89)
183 3o46_A Maguk P55 subfamily mem 98.1 5.7E-06 1.9E-10 62.1 6.5 73 93-169 15-88 (93)
184 2y4t_A DNAJ homolog subfamily 98.1 1.9E-05 6.4E-10 69.8 10.8 89 187-275 221-318 (450)
185 2kpk_A Membrane-associated gua 98.1 5.7E-06 2E-10 66.2 6.7 81 85-169 18-105 (129)
186 2dkr_A LIN-7 homolog B; LIN-7B 98.1 6.7E-06 2.3E-10 61.3 6.7 78 88-169 8-90 (93)
187 3uq3_A Heat shock protein STI1 98.1 9.5E-06 3.2E-10 65.4 8.1 81 187-275 149-230 (258)
188 1ihg_A Cyclophilin 40; ppiase 98.1 3.6E-06 1.2E-10 77.5 6.3 65 211-275 219-296 (370)
189 1v5q_A GRIP1 homolog, glutamat 98.1 1.2E-05 4.2E-10 63.6 8.5 88 80-171 10-109 (122)
190 2if4_A ATFKBP42; FKBP-like, al 98.1 2.1E-06 7.2E-11 77.3 4.6 62 214-275 178-253 (338)
191 2rcz_A Tight junction protein 98.1 5.5E-06 1.9E-10 59.6 5.9 67 92-168 12-80 (81)
192 1uew_A Membrane associated gua 98.1 1.3E-05 4.4E-10 62.5 8.4 82 83-169 8-103 (114)
193 3sfj_A TAX1-binding protein 3; 98.1 8.1E-06 2.8E-10 62.1 7.1 70 94-168 20-104 (104)
194 3e17_A Tight junction protein 98.1 8.9E-06 3E-10 61.1 7.1 70 94-171 14-83 (88)
195 1qqe_A Vesicular transport pro 98.1 6E-06 2E-10 71.7 7.0 84 187-275 87-181 (292)
196 4eqf_A PEX5-related protein; a 98.1 7.7E-06 2.6E-10 70.9 7.6 84 184-275 72-156 (365)
197 1ujd_A KIAA0559 protein; PDZ d 98.1 1.5E-05 5E-10 62.7 8.6 86 81-170 8-110 (117)
198 3cyy_A Tight junction protein 98.1 1.1E-05 3.7E-10 59.8 7.4 66 93-168 15-82 (92)
199 3ieg_A DNAJ homolog subfamily 98.1 1.3E-05 4.4E-10 67.4 8.5 87 187-276 244-330 (359)
200 1wfg_A Regulating synaptic mem 98.1 7.5E-06 2.6E-10 66.1 6.7 71 94-168 49-126 (131)
201 1q3o_A Shank1; PDZ, GKAP, pept 98.1 1.8E-05 6.1E-10 61.1 8.6 77 86-169 8-104 (109)
202 2r5s_A Uncharacterized protein 98.1 2.5E-06 8.6E-11 68.1 3.8 57 217-276 8-64 (176)
203 4eqf_A PEX5-related protein; a 98.0 7E-06 2.4E-10 71.1 6.8 79 189-275 225-304 (365)
204 2ifu_A Gamma-SNAP; membrane fu 98.0 6.4E-06 2.2E-10 72.0 6.6 87 188-275 87-178 (307)
205 2v5f_A Prolyl 4-hydroxylase su 98.0 5.3E-06 1.8E-10 62.8 5.3 61 215-275 5-69 (104)
206 2e2e_A Formate-dependent nitri 98.0 1.4E-05 4.6E-10 63.0 7.8 83 185-275 52-138 (177)
207 3r0h_A INAD, inactivation-NO-a 98.0 1.8E-05 6.1E-10 66.5 9.1 84 85-173 113-200 (206)
208 3gw4_A Uncharacterized protein 98.0 1.9E-05 6.5E-10 62.1 8.7 91 185-275 34-130 (203)
209 2ego_A General receptor for ph 98.0 1.5E-05 5.3E-10 60.1 7.8 76 85-167 4-94 (96)
210 2dc2_A GOPC, golgi associated 98.0 9.9E-06 3.4E-10 62.3 6.8 82 86-171 10-97 (103)
211 4amh_A Disks large homolog 1; 98.0 1.2E-05 4.2E-10 62.2 7.3 75 92-170 12-93 (106)
212 1na0_A Designed protein CTPR3; 98.0 1.2E-05 4E-10 57.4 6.7 57 216-275 10-66 (125)
213 2gw1_A Mitochondrial precursor 98.0 9.7E-06 3.3E-10 72.3 7.5 60 213-276 4-63 (514)
214 2cs5_A Tyrosine-protein phosph 98.0 1E-05 3.5E-10 63.4 6.8 81 85-169 15-106 (119)
215 3as5_A MAMA; tetratricopeptide 98.0 1.5E-05 5E-10 60.6 7.5 56 217-275 112-167 (186)
216 2eaq_A LIM domain only protein 98.0 9.2E-06 3.2E-10 60.3 6.0 69 94-168 18-88 (90)
217 1uju_A Scribble; PDZ domain, c 98.0 7.8E-06 2.7E-10 63.3 5.8 81 87-171 11-106 (111)
218 3bpu_A Membrane-associated gua 98.0 3.4E-05 1.2E-09 57.1 9.0 77 85-168 3-85 (88)
219 2qfc_A PLCR protein; TPR, HTH, 98.0 8E-06 2.7E-10 70.4 6.3 88 188-275 126-219 (293)
220 1fch_A Peroxisomal targeting s 98.0 1.4E-05 4.7E-10 68.5 7.7 83 185-275 225-308 (368)
221 2v90_A PDZ domain-containing p 98.0 1.6E-05 5.4E-10 59.8 7.1 72 93-171 14-91 (96)
222 1w3b_A UDP-N-acetylglucosamine 98.0 1E-05 3.4E-10 70.9 6.9 56 217-275 69-124 (388)
223 1b8q_A Protein (neuronal nitri 98.0 1.1E-05 3.9E-10 63.8 6.5 83 83-171 6-96 (127)
224 4e34_A Golgi-associated PDZ an 98.0 1.5E-05 5.1E-10 58.8 6.8 77 87-167 4-86 (87)
225 2vsp_A PDZ domain-containing p 98.0 7.5E-06 2.6E-10 61.2 5.2 78 87-169 5-86 (91)
226 3u3w_A Transcriptional activat 98.0 5.7E-06 2E-10 71.3 5.1 90 186-275 164-260 (293)
227 3r0h_A INAD, inactivation-NO-a 98.0 2.8E-05 9.5E-10 65.4 9.0 83 83-169 16-108 (206)
228 2edz_A PDZ domain-containing p 98.0 2.6E-05 9E-10 60.7 8.2 79 85-168 13-96 (114)
229 1vb7_A PDZ and LIM domain 2; P 98.0 9.8E-06 3.3E-10 61.0 5.6 75 87-168 8-88 (94)
230 2fo7_A Synthetic consensus TPR 98.0 2.1E-05 7.2E-10 56.3 7.1 81 187-275 45-126 (136)
231 3hym_B Cell division cycle pro 98.0 1.2E-05 4.1E-10 67.2 6.6 56 217-275 238-293 (330)
232 2gzv_A PRKCA-binding protein; 98.0 2.6E-05 9E-10 61.5 8.1 72 94-169 37-110 (114)
233 3k1r_A Harmonin; protein-prote 98.0 1.5E-05 5.2E-10 67.6 7.3 76 85-168 84-167 (192)
234 3as5_A MAMA; tetratricopeptide 98.0 2.5E-05 8.5E-10 59.3 7.7 84 184-275 49-133 (186)
235 1x6d_A Interleukin-16; PDZ dom 98.0 1.5E-05 5.2E-10 62.4 6.7 85 81-169 11-103 (119)
236 3nf1_A KLC 1, kinesin light ch 98.0 3.3E-05 1.1E-09 64.0 9.0 92 184-275 34-134 (311)
237 2jxo_A Ezrin-radixin-moesin-bi 98.0 2E-05 6.7E-10 59.5 7.0 74 87-167 11-91 (98)
238 2eei_A PDZ domain-containing p 98.0 9.5E-06 3.3E-10 62.1 5.3 80 87-171 10-93 (106)
239 1uf1_A KIAA1526 protein; PDZ d 98.0 3.2E-05 1.1E-09 61.4 8.5 80 87-172 24-107 (128)
240 3ngh_A PDZ domain-containing p 98.0 1.1E-05 3.7E-10 61.8 5.6 71 93-168 13-84 (106)
241 1na3_A Designed protein CTPR2; 97.9 3.2E-05 1.1E-09 53.6 7.5 74 185-266 17-91 (91)
242 2fo7_A Synthetic consensus TPR 97.9 2.5E-05 8.7E-10 55.8 7.1 80 188-275 12-92 (136)
243 3gsl_A Disks large homolog 4; 97.9 2.9E-05 9.9E-10 64.0 8.4 82 84-169 4-95 (196)
244 1uez_A KIAA1526 protein; PDZ d 97.9 1.1E-05 3.9E-10 61.3 5.4 78 85-168 8-92 (101)
245 3u4t_A TPR repeat-containing p 97.9 7.6E-06 2.6E-10 67.3 4.7 85 186-276 12-98 (272)
246 3nf1_A KLC 1, kinesin light ch 97.9 4.3E-05 1.5E-09 63.2 9.2 86 185-275 77-176 (311)
247 2vq2_A PILW, putative fimbrial 97.9 3.2E-05 1.1E-09 60.9 8.0 54 220-274 81-135 (225)
248 2vq2_A PILW, putative fimbrial 97.9 3.3E-05 1.1E-09 60.9 8.1 83 185-275 16-100 (225)
249 2ho1_A Type 4 fimbrial biogene 97.9 4E-05 1.4E-09 62.5 8.7 55 218-275 108-164 (252)
250 2e2e_A Formate-dependent nitri 97.9 9E-06 3.1E-10 64.0 4.6 79 189-275 22-104 (177)
251 3nfk_A Tyrosine-protein phosph 97.9 2.9E-05 9.8E-10 59.5 7.3 79 85-167 17-106 (107)
252 2vsy_A XCC0866; transferase, g 97.9 1.4E-05 4.7E-10 75.4 6.7 53 219-274 61-113 (568)
253 2vsy_A XCC0866; transferase, g 97.9 1.3E-05 4.6E-10 75.5 6.6 78 191-276 3-81 (568)
254 3cv0_A Peroxisome targeting si 97.9 3.1E-05 1.1E-09 64.6 8.1 82 186-275 181-263 (327)
255 1fch_A Peroxisomal targeting s 97.9 2.3E-05 8E-10 67.1 7.5 85 183-275 70-155 (368)
256 2ifu_A Gamma-SNAP; membrane fu 97.9 1.2E-05 4.2E-10 70.2 5.8 81 191-276 129-219 (307)
257 3k9i_A BH0479 protein; putativ 97.9 5.6E-06 1.9E-10 62.0 3.1 50 227-276 2-51 (117)
258 3qou_A Protein YBBN; thioredox 97.9 2.2E-05 7.5E-10 68.4 7.3 58 216-276 118-175 (287)
259 2f5y_A Regulator of G-protein 97.9 3E-05 1E-09 58.0 7.0 76 88-170 6-84 (91)
260 2eeg_A PDZ and LIM domain prot 97.9 1.7E-05 5.7E-10 59.7 5.7 78 86-168 9-90 (94)
261 1ujv_A Membrane associated gua 97.9 6.4E-05 2.2E-09 57.3 9.0 79 83-169 8-91 (96)
262 3ulq_A Response regulator aspa 97.9 1.7E-05 5.8E-10 70.2 6.5 89 187-275 153-247 (383)
263 3hym_B Cell division cycle pro 97.9 4.2E-05 1.4E-09 63.8 8.6 56 217-275 92-148 (330)
264 3fp2_A TPR repeat-containing p 97.9 3E-05 1E-09 70.0 8.1 64 209-275 19-82 (537)
265 2q7f_A YRRB protein; TPR, prot 97.9 3E-05 1E-09 62.3 7.1 54 219-275 163-216 (243)
266 3ro2_A PINS homolog, G-protein 97.9 2.8E-05 9.5E-10 64.1 7.1 87 189-275 17-106 (338)
267 3qe1_A Sorting nexin-27, G pro 97.9 4.6E-05 1.6E-09 58.3 7.8 79 87-170 8-103 (107)
268 1x5n_A Harmonin; PDZ domain, u 97.9 5.6E-05 1.9E-09 58.6 8.3 73 92-170 26-100 (114)
269 2q7f_A YRRB protein; TPR, prot 97.9 4.6E-05 1.6E-09 61.1 8.1 55 218-275 128-182 (243)
270 2qfc_A PLCR protein; TPR, HTH, 97.9 8.5E-06 2.9E-10 70.2 4.0 83 186-273 164-258 (293)
271 3ulq_A Response regulator aspa 97.9 3.7E-05 1.2E-09 68.0 8.1 90 186-275 193-287 (383)
272 1wi4_A Synip, syntaxin binding 97.9 5.1E-05 1.8E-09 59.2 8.0 80 85-168 15-104 (109)
273 1v5l_A PDZ and LIM domain 3; a 97.8 1.2E-05 4.2E-10 61.6 4.2 74 89-169 11-88 (103)
274 1w3b_A UDP-N-acetylglucosamine 97.8 5.4E-05 1.8E-09 66.3 8.7 53 219-274 241-293 (388)
275 2pzi_A Probable serine/threoni 97.8 1.2E-05 4E-10 79.4 5.0 72 204-275 455-557 (681)
276 4a1s_A PINS, partner of inscut 97.8 3.6E-05 1.2E-09 67.4 7.4 89 187-275 58-149 (411)
277 2z17_A Pleckstrin homology SEC 97.8 2E-05 6.8E-10 60.4 5.1 71 87-164 17-102 (104)
278 3cv0_A Peroxisome targeting si 97.8 5.6E-05 1.9E-09 63.0 8.2 84 184-275 28-112 (327)
279 3qww_A SET and MYND domain-con 97.8 6.7E-05 2.3E-09 71.7 9.8 88 184-276 305-406 (433)
280 3u3w_A Transcriptional activat 97.8 2.8E-05 9.7E-10 66.9 6.5 58 218-275 158-219 (293)
281 2r5s_A Uncharacterized protein 97.8 4.3E-05 1.5E-09 60.9 7.1 72 203-275 95-167 (176)
282 2xpi_A Anaphase-promoting comp 97.8 8.1E-05 2.8E-09 68.5 9.8 59 215-276 516-574 (597)
283 2d8i_A T-cell lymphoma invasio 97.8 4.8E-05 1.7E-09 60.5 7.2 85 80-171 10-103 (114)
284 2pzi_A Probable serine/threoni 97.8 1.2E-05 4.2E-10 79.2 4.4 58 216-276 434-491 (681)
285 3gsl_A Disks large homolog 4; 97.8 5.8E-05 2E-09 62.1 7.7 81 86-170 101-191 (196)
286 3q15_A PSP28, response regulat 97.8 3.7E-05 1.2E-09 68.2 6.9 88 188-275 152-245 (378)
287 2y4t_A DNAJ homolog subfamily 97.8 3.6E-05 1.2E-09 68.0 6.9 57 217-276 297-353 (450)
288 2ho1_A Type 4 fimbrial biogene 97.8 8.2E-05 2.8E-09 60.6 8.5 55 218-275 144-198 (252)
289 4abn_A Tetratricopeptide repea 97.8 3.9E-05 1.3E-09 72.0 7.4 81 186-275 111-202 (474)
290 3gw4_A Uncharacterized protein 97.8 3.5E-05 1.2E-09 60.5 6.0 90 186-275 75-170 (203)
291 4abn_A Tetratricopeptide repea 97.8 2.4E-05 8.1E-10 73.4 5.9 71 205-275 202-281 (474)
292 1v6b_A Harmonin isoform A1; st 97.8 8.5E-05 2.9E-09 58.6 8.2 81 87-171 22-109 (118)
293 2pzd_A Serine protease HTRA2; 97.8 5.6E-05 1.9E-09 58.5 7.0 57 104-168 34-90 (113)
294 3kzd_A TIAM-1, T-lymphoma inva 97.7 7.8E-05 2.7E-09 58.3 7.3 79 82-167 3-90 (94)
295 3q15_A PSP28, response regulat 97.7 6.1E-05 2.1E-09 66.8 7.4 82 186-275 191-284 (378)
296 3mkr_A Coatomer subunit epsilo 97.7 0.00014 4.6E-09 64.0 9.6 52 218-272 203-254 (291)
297 3shw_A Tight junction protein 97.7 6.1E-05 2.1E-09 73.7 8.1 75 88-167 4-82 (468)
298 1z87_A Alpha-1-syntrophin; pro 97.7 6.7E-05 2.3E-09 68.3 7.8 85 82-170 74-164 (263)
299 3sf4_A G-protein-signaling mod 97.7 5.7E-05 1.9E-09 65.0 6.9 89 187-275 19-110 (406)
300 1p1d_A PDZ45, glutamate recept 97.7 0.0001 3.5E-09 62.1 8.2 81 85-169 6-98 (196)
301 2vsv_A Rhophilin-2; scaffold p 97.7 0.00011 3.7E-09 58.2 7.6 76 88-170 26-105 (109)
302 3ro2_A PINS homolog, G-protein 97.7 6.4E-05 2.2E-09 61.9 6.4 87 189-275 195-286 (338)
303 4a1s_A PINS, partner of inscut 97.7 7E-05 2.4E-09 65.5 7.0 82 189-275 235-326 (411)
304 1ufx_A KIAA1526 protein; PDZ d 97.7 7.7E-05 2.6E-09 57.7 6.3 80 86-169 7-97 (103)
305 2yub_A LIMK-2, LIM domain kina 97.7 0.00015 5E-09 57.9 8.1 70 94-170 28-106 (118)
306 2qbw_A PDZ-fibronectin fusion 97.7 0.00014 4.9E-09 60.6 8.3 71 93-169 2-82 (195)
307 2qt5_A Glutamate receptor-inte 97.6 0.00016 5.4E-09 60.9 8.4 78 85-168 7-92 (200)
308 3qou_A Protein YBBN; thioredox 97.6 0.0002 6.7E-09 62.4 9.2 83 189-276 129-243 (287)
309 3tsz_A Tight junction protein 97.6 0.00011 3.8E-09 69.7 8.3 73 91-168 17-91 (391)
310 2qt5_A Glutamate receptor-inte 97.6 0.00014 4.9E-09 61.1 8.0 78 85-168 106-194 (200)
311 1wao_1 Serine/threonine protei 97.6 7.1E-06 2.4E-10 77.8 -0.1 57 216-275 7-63 (477)
312 3n71_A Histone lysine methyltr 97.6 0.0002 6.9E-09 69.5 10.0 87 184-275 316-416 (490)
313 2kjd_A Sodium/hydrogen exchang 97.6 0.00019 6.4E-09 56.6 8.0 75 87-168 11-92 (128)
314 3sf4_A G-protein-signaling mod 97.6 0.00023 8E-09 61.1 9.1 83 188-275 238-330 (406)
315 3mkr_A Coatomer subunit epsilo 97.6 0.00011 3.9E-09 64.5 6.8 47 227-276 178-224 (291)
316 3khf_A Microtubule-associated 97.6 8.4E-05 2.9E-09 56.1 5.1 71 93-168 13-92 (99)
317 2edv_A FERM and PDZ domain-con 97.6 9.1E-05 3.1E-09 56.2 5.2 77 85-169 8-89 (96)
318 1p1d_A PDZ45, glutamate recept 97.5 0.00022 7.6E-09 60.0 7.7 77 86-168 108-194 (196)
319 2xkx_A Disks large homolog 4; 97.5 0.00023 7.7E-09 72.1 8.9 83 85-171 307-393 (721)
320 1wif_A RSGI RUH-020, riken cDN 97.5 0.00011 3.9E-09 59.8 5.4 83 85-172 27-114 (126)
321 1w9e_A Syntenin 1; cell adhesi 97.5 0.00025 8.4E-09 58.4 7.4 72 87-166 6-84 (166)
322 4g1t_A Interferon-induced prot 97.5 0.0001 3.4E-09 65.9 5.0 56 220-275 56-117 (472)
323 4g1t_A Interferon-induced prot 97.4 0.0002 6.8E-09 64.0 6.5 79 189-275 106-198 (472)
324 2xpi_A Anaphase-promoting comp 97.4 0.00027 9.3E-09 64.9 7.5 53 218-273 410-462 (597)
325 2kc7_A BFR218_protein; tetratr 97.4 0.00023 8E-09 50.7 5.1 60 186-250 9-70 (99)
326 3qik_A Phosphatidylinositol 3, 97.4 0.00016 5.4E-09 57.7 4.5 70 92-167 27-99 (101)
327 1r6j_A Syntenin 1; PDZ, membra 97.3 0.0005 1.7E-08 52.2 6.8 73 86-168 5-81 (82)
328 1y7n_A Amyloid beta A4 precurs 97.3 0.0003 1E-08 53.3 5.3 64 94-167 25-88 (90)
329 2yuy_A RHO GTPase activating p 97.3 7E-05 2.4E-09 59.5 1.5 61 105-170 61-121 (126)
330 2ond_A Cleavage stimulation fa 97.3 0.00052 1.8E-08 59.5 7.1 71 203-275 85-157 (308)
331 2lob_A Golgi-associated PDZ an 96.4 4.1E-05 1.4E-09 60.4 0.0 75 86-165 28-109 (112)
332 2xkx_A Disks large homolog 4; 97.3 0.00054 1.8E-08 69.3 8.1 82 83-168 57-148 (721)
333 1vae_A Rhophilin 2, rhophilin, 97.2 0.00026 9E-09 55.7 4.3 72 93-171 26-98 (111)
334 3suz_A Amyloid beta A4 precurs 97.2 0.00021 7E-09 67.5 3.9 79 86-170 205-295 (388)
335 3rle_A Golgi reassembly-stacki 97.1 0.0013 4.4E-08 56.5 8.2 80 94-180 96-181 (209)
336 2l97_A HTRA, putative serine p 97.1 0.0012 4.2E-08 53.1 7.4 57 104-168 56-114 (134)
337 1ouv_A Conserved hypothetical 97.1 0.0011 3.7E-08 55.4 7.2 54 217-275 76-137 (273)
338 1ouv_A Conserved hypothetical 97.1 0.001 3.5E-08 55.5 6.8 43 228-275 163-209 (273)
339 2p3w_A Probable serine proteas 97.1 0.0014 4.6E-08 50.6 6.9 58 104-169 34-91 (112)
340 3bee_A Putative YFRE protein; 97.1 0.0011 3.6E-08 50.3 6.1 46 203-248 30-76 (93)
341 2krg_A Na(+)/H(+) exchange reg 97.0 0.0004 1.4E-08 61.1 4.1 76 87-167 11-91 (216)
342 1hz4_A MALT regulatory protein 97.0 0.00085 2.9E-08 58.5 6.2 84 187-275 63-158 (373)
343 3n71_A Histone lysine methyltr 97.0 0.0018 6.1E-08 62.8 9.0 66 210-275 304-374 (490)
344 2kat_A Uncharacterized protein 97.0 0.00032 1.1E-08 51.7 2.9 41 232-275 2-42 (115)
345 1hz4_A MALT regulatory protein 97.0 0.0036 1.2E-07 54.5 10.1 83 188-275 104-197 (373)
346 4f3v_A ESX-1 secretion system 97.0 0.00072 2.5E-08 61.9 5.5 56 218-275 174-231 (282)
347 4b4t_Q 26S proteasome regulato 97.0 0.0013 4.6E-08 57.9 7.1 58 218-275 7-78 (434)
348 1y8t_A Hypothetical protein RV 97.0 0.0019 6.4E-08 58.6 8.1 70 95-171 231-303 (324)
349 2kl1_A YLBL protein; structure 97.0 0.0011 3.9E-08 50.2 5.4 57 104-168 4-62 (94)
350 3i18_A LMO2051 protein; alpha- 96.9 0.0014 4.8E-08 50.0 5.7 58 103-168 5-64 (100)
351 3qwp_A SET and MYND domain-con 96.9 0.0015 5E-08 62.0 7.1 58 218-275 332-394 (429)
352 4fgm_A Aminopeptidase N family 96.9 0.00081 2.8E-08 67.2 5.4 68 94-168 486-553 (597)
353 2i6v_A General secretion pathw 96.9 0.00066 2.3E-08 50.5 3.5 68 93-168 5-77 (87)
354 3ffl_A Anaphase-promoting comp 96.9 0.0012 4.2E-08 57.0 5.5 60 217-276 65-146 (167)
355 2kjp_A Uncharacterized protein 96.9 0.00055 1.9E-08 52.1 3.0 55 106-168 2-58 (91)
356 1te0_A Protease DEGS; two doma 96.9 0.0022 7.6E-08 58.2 7.5 67 95-168 223-302 (318)
357 1zu2_A Mitochondrial import re 96.8 0.00094 3.2E-08 56.6 4.1 49 203-251 67-127 (158)
358 3id1_A Regulator of sigma E pr 96.8 0.0017 5.7E-08 49.4 5.0 57 107-170 4-62 (95)
359 3qww_A SET and MYND domain-con 96.7 0.0038 1.3E-07 59.6 8.5 57 219-275 302-363 (433)
360 2ond_A Cleavage stimulation fa 96.7 0.0039 1.3E-07 54.0 7.5 70 203-275 37-122 (308)
361 1dce_A Protein (RAB geranylger 96.7 0.0033 1.1E-07 61.5 7.8 83 184-273 35-130 (567)
362 4f3v_A ESX-1 secretion system 96.6 0.0043 1.5E-07 56.8 7.2 126 144-276 64-195 (282)
363 2i4s_A General secretion pathw 96.5 0.0029 9.8E-08 48.7 5.0 58 106-168 38-95 (105)
364 3qwp_A SET and MYND domain-con 96.5 0.0067 2.3E-07 57.5 8.5 59 217-275 289-352 (429)
365 1fc6_A Photosystem II D1 prote 96.4 0.0058 2E-07 57.1 7.3 69 95-170 87-160 (388)
366 1lcy_A HTRA2 serine protease; 96.4 0.0066 2.3E-07 55.4 7.1 56 105-168 256-311 (325)
367 3dra_A Protein farnesyltransfe 96.4 0.0096 3.3E-07 54.3 8.2 97 172-275 26-133 (306)
368 2zpm_A Regulator of sigma E pr 96.3 0.0029 1E-07 46.6 3.6 55 107-168 6-61 (91)
369 2v5f_A Prolyl 4-hydroxylase su 96.3 0.011 3.9E-07 44.2 6.9 63 189-259 17-87 (104)
370 3bee_A Putative YFRE protein; 96.2 0.013 4.5E-07 44.2 6.9 57 216-275 7-66 (93)
371 3rjv_A Putative SEL1 repeat pr 96.2 0.017 5.9E-07 47.7 8.0 57 218-275 88-152 (212)
372 3stj_A Protease DEGQ; serine p 96.1 0.0056 1.9E-07 56.8 5.4 68 95-169 242-322 (345)
373 4a8c_A Periplasmic PH-dependen 96.1 0.0077 2.6E-07 57.4 6.4 58 105-169 363-420 (436)
374 3soe_A Membrane-associated gua 96.0 0.03 1E-06 44.9 8.6 78 85-170 12-94 (113)
375 2hga_A Conserved protein MTH13 96.0 0.015 5.3E-07 46.6 6.7 59 100-167 20-80 (125)
376 2ooe_A Cleavage stimulation fa 95.9 0.033 1.1E-06 51.7 9.6 47 227-276 403-449 (530)
377 3rjv_A Putative SEL1 repeat pr 95.9 0.0094 3.2E-07 49.2 5.3 53 217-275 52-112 (212)
378 1dce_A Protein (RAB geranylger 95.9 0.012 4E-07 57.7 6.6 69 203-274 94-166 (567)
379 3rle_A Golgi reassembly-stacki 95.9 0.0087 3E-07 51.3 5.0 57 106-168 17-75 (209)
380 3qo6_A Protease DO-like 1, chl 95.9 0.0082 2.8E-07 55.3 5.2 68 95-169 235-321 (348)
381 1pc2_A Mitochondria fission pr 95.8 0.0073 2.5E-07 51.0 4.1 32 218-249 74-105 (152)
382 3pv2_A DEGQ; trypsin fold, PDZ 95.6 0.012 4.3E-07 56.4 5.3 57 105-168 386-442 (451)
383 1xi4_A Clathrin heavy chain; a 95.5 0.051 1.7E-06 60.3 10.4 77 191-275 1076-1157(1630)
384 3ma5_A Tetratricopeptide repea 95.5 0.0085 2.9E-07 43.8 3.1 60 185-249 15-75 (100)
385 1w9e_A Syntenin 1; cell adhesi 95.5 0.014 4.8E-07 47.7 4.7 45 85-135 88-136 (166)
386 4a8c_A Periplasmic PH-dependen 95.5 0.017 5.7E-07 55.1 5.8 58 105-169 263-322 (436)
387 4b4t_Q 26S proteasome regulato 95.3 0.031 1.1E-06 49.1 6.7 57 219-275 139-198 (434)
388 3k50_A Putative S41 protease; 95.3 0.025 8.5E-07 54.0 6.4 56 106-169 91-146 (403)
389 3pv2_A DEGQ; trypsin fold, PDZ 95.3 0.015 5.2E-07 55.8 4.8 58 105-169 282-341 (451)
390 2ooe_A Cleavage stimulation fa 95.2 0.041 1.4E-06 51.1 7.3 70 203-275 259-344 (530)
391 3num_A Serine protease HTRA1; 95.0 0.004 1.4E-07 56.8 0.0 57 104-168 253-309 (332)
392 3dra_A Protein farnesyltransfe 95.0 0.031 1.1E-06 50.9 5.7 76 192-275 84-169 (306)
393 1pc2_A Mitochondria fission pr 94.9 0.076 2.6E-06 44.8 7.6 57 217-275 34-94 (152)
394 1ky9_A Protease DO, DEGP, HTRA 94.7 0.0053 1.8E-07 59.0 0.0 67 95-168 372-439 (448)
395 1klx_A Cysteine rich protein B 94.7 0.086 2.9E-06 41.1 7.0 55 216-275 58-120 (138)
396 1xi4_A Clathrin heavy chain; a 94.7 0.099 3.4E-06 58.0 9.6 82 183-275 1140-1244(1630)
397 2xm6_A Protein corresponding t 94.5 0.062 2.1E-06 49.4 6.4 53 218-275 366-426 (490)
398 1b89_A Protein (clathrin heavy 94.4 0.056 1.9E-06 52.7 6.3 39 203-241 136-174 (449)
399 3q7a_A Farnesyltransferase alp 94.4 0.059 2E-06 50.6 6.2 101 168-275 43-148 (349)
400 4gns_B Protein CSD3, chitin bi 94.1 0.065 2.2E-06 55.3 6.3 50 224-276 346-395 (754)
401 3dss_A Geranylgeranyl transfer 94.0 0.082 2.8E-06 49.1 6.3 56 217-275 110-168 (331)
402 1k32_A Tricorn protease; prote 93.9 0.099 3.4E-06 53.3 7.2 69 94-170 738-816 (1045)
403 3e4b_A ALGK; tetratricopeptide 93.9 0.067 2.3E-06 49.7 5.4 39 230-274 232-273 (452)
404 1b89_A Protein (clathrin heavy 93.7 0.024 8.3E-07 55.3 2.3 48 217-275 124-171 (449)
405 2xm6_A Protein corresponding t 93.3 0.15 5.1E-06 46.8 6.8 53 218-275 114-174 (490)
406 3ly7_A Transcriptional activat 93.0 0.11 3.7E-06 49.6 5.4 50 223-276 285-334 (372)
407 3mv2_B Coatomer subunit epsilo 92.9 0.21 7.3E-06 46.1 7.1 43 229-275 192-234 (310)
408 1ky9_A Protease DO, DEGP, HTRA 92.6 0.079 2.7E-06 50.8 3.9 57 105-168 286-344 (448)
409 3dss_A Geranylgeranyl transfer 92.6 0.18 6.1E-06 46.8 6.2 54 219-275 33-97 (331)
410 3suz_A Amyloid beta A4 precurs 92.1 0.027 9.2E-07 53.0 0.0 55 108-167 318-372 (388)
411 3q7a_A Farnesyltransferase alp 91.9 0.11 3.9E-06 48.6 3.9 64 203-269 110-176 (349)
412 4fln_A Protease DO-like 2, chl 91.8 0.32 1.1E-05 48.3 7.2 39 95-135 255-305 (539)
413 3mv2_B Coatomer subunit epsilo 91.6 0.28 9.4E-06 45.4 6.1 54 219-275 104-159 (310)
414 1klx_A Cysteine rich protein B 91.0 0.58 2E-05 36.3 6.6 50 221-275 31-84 (138)
415 3e4b_A ALGK; tetratricopeptide 90.7 0.38 1.3E-05 44.5 6.2 40 230-275 302-345 (452)
416 1nzn_A CGI-135 protein, fissio 90.5 0.5 1.7E-05 38.7 6.1 38 214-251 73-110 (126)
417 2w2u_A Hypothetical P60 katani 89.8 1.4 4.7E-05 33.4 7.6 33 211-243 15-47 (83)
418 2vkj_A TM1634; membrane protei 89.3 1.2 4.2E-05 35.5 7.1 52 213-264 51-102 (106)
419 2v6y_A AAA family ATPase, P60 89.0 1.4 4.8E-05 33.1 7.1 30 214-243 10-39 (83)
420 3ax2_A Mitochondrial import re 86.4 3.3 0.00011 31.1 7.6 35 216-250 18-52 (73)
421 3o48_A Mitochondria fission 1 86.0 1.6 5.6E-05 36.2 6.4 38 214-251 77-114 (134)
422 4a5x_A MITD1, MIT domain-conta 84.5 1.5 5.1E-05 33.4 5.1 29 215-243 16-44 (86)
423 1y8m_A FIS1; mitochondria, unk 83.6 3.2 0.00011 34.8 7.2 36 216-251 78-113 (144)
424 2cpt_A SKD1 protein, vacuolar 83.3 4.3 0.00015 32.5 7.5 29 215-243 18-46 (117)
425 3ly7_A Transcriptional activat 81.0 0.89 3.1E-05 43.3 3.1 31 219-249 314-344 (372)
426 2ff4_A Probable regulatory pro 80.8 4.8 0.00017 37.2 8.0 84 189-275 127-228 (388)
427 1wfd_A Hypothetical protein 15 80.6 2.5 8.7E-05 32.4 5.1 30 214-243 14-43 (93)
428 3u64_A Protein TP_0956; tetrat 80.3 3.8 0.00013 38.2 7.0 71 203-276 184-264 (301)
429 1nzn_A CGI-135 protein, fissio 79.8 2.1 7E-05 35.0 4.6 56 218-275 38-97 (126)
430 2v6x_A Vacuolar protein sortin 79.4 3.1 0.00011 31.0 5.1 29 216-244 14-42 (85)
431 3o48_A Mitochondria fission 1 78.1 1.4 4.9E-05 36.6 3.1 54 220-275 45-101 (134)
432 2ijq_A Hypothetical protein; s 76.9 9 0.00031 32.5 7.8 61 215-275 32-98 (161)
433 1y8m_A FIS1; mitochondria, unk 76.2 2.8 9.4E-05 35.3 4.4 55 219-275 43-100 (144)
434 1om2_A Protein (mitochondrial 71.1 7.3 0.00025 30.6 5.4 33 217-249 22-54 (95)
435 3mkq_A Coatomer beta'-subunit; 70.0 5 0.00017 38.3 5.1 61 215-275 681-759 (814)
436 2crb_A Nuclear receptor bindin 69.2 4.3 0.00015 32.2 3.7 23 220-242 20-42 (97)
437 4g26_A Pentatricopeptide repea 69.0 7.8 0.00027 37.1 6.2 47 225-275 150-198 (501)
438 2cwy_A Hypothetical protein TT 62.9 13 0.00043 28.6 5.2 50 219-268 5-57 (94)
439 2pmr_A Uncharacterized protein 61.0 6.3 0.00021 30.4 3.1 57 185-241 8-65 (87)
440 3kae_A CDC27, possible protein 59.1 11 0.00039 33.6 4.9 49 220-276 38-86 (242)
441 4e6h_A MRNA 3'-END-processing 58.5 7.7 0.00026 39.0 4.2 70 203-275 330-401 (679)
442 4b4t_R RPN7, 26S proteasome re 58.5 5.7 0.00019 37.2 3.0 54 220-273 136-189 (429)
443 3u64_A Protein TP_0956; tetrat 58.2 4.5 0.00015 37.7 2.2 54 190-248 217-273 (301)
444 3ffl_A Anaphase-promoting comp 57.2 32 0.0011 29.3 7.2 57 219-275 24-86 (167)
445 4g26_A Pentatricopeptide repea 56.6 16 0.00055 34.8 5.9 48 224-275 114-163 (501)
446 2dl1_A Spartin; SPG20, MIT, st 54.7 24 0.00084 28.6 5.8 43 205-247 12-61 (116)
447 4e6h_A MRNA 3'-END-processing 54.4 8.1 0.00028 38.9 3.5 52 220-274 474-526 (679)
448 4fhn_B Nucleoporin NUP120; pro 54.0 18 0.00061 38.1 6.2 87 189-275 854-961 (1139)
449 4fln_A Protease DO-like 2, chl 51.6 19 0.00064 35.7 5.6 58 106-171 416-473 (539)
450 1jt8_A EIF-1A, probable transl 49.5 12 0.00041 29.5 3.1 52 85-145 20-73 (102)
451 2dgy_A MGC11102 protein; EIF-1 45.6 28 0.00097 27.7 4.8 52 85-145 15-68 (111)
452 2uy1_A Cleavage stimulation fa 45.1 90 0.0031 29.4 9.0 43 231-276 195-237 (493)
453 2rpa_A Katanin P60 ATPase-cont 44.9 17 0.00059 27.4 3.2 25 219-243 16-40 (78)
454 3eab_A Spastin; spastin, MIT, 44.6 25 0.00086 27.3 4.2 39 204-242 5-46 (89)
455 2ymb_A MITD1, MIT domain-conta 43.8 4.9 0.00017 36.6 0.0 27 217-243 25-51 (257)
456 3spa_A Mtrpol, DNA-directed RN 43.5 42 0.0014 36.5 7.0 48 224-275 174-224 (1134)
457 3mv2_A Coatomer subunit alpha; 43.3 26 0.0009 32.9 4.9 25 219-243 118-142 (325)
458 3mkr_B Coatomer subunit alpha; 42.1 28 0.00097 32.6 4.9 25 219-243 106-130 (320)
459 4h7y_A Dual specificity protei 38.7 72 0.0025 27.2 6.5 69 191-268 74-143 (161)
460 3pjy_A Hypothetical signal pep 38.3 14 0.00048 30.3 2.0 26 105-132 101-126 (136)
461 2zan_A Vacuolar protein sortin 34.2 8.5 0.00029 36.2 0.0 27 217-243 13-39 (444)
462 2hsb_A Hypothetical UPF0332 pr 33.1 88 0.003 23.6 5.8 29 208-236 5-33 (126)
463 2cfu_A SDSA1; SDS-hydrolase, l 32.2 53 0.0018 32.8 5.4 49 217-268 451-499 (658)
464 1wfd_A Hypothetical protein 15 31.8 70 0.0024 24.2 4.9 21 230-250 37-57 (93)
465 2ff4_A Probable regulatory pro 31.2 1.4E+02 0.0049 27.2 7.8 58 218-275 118-194 (388)
466 2j3t_D Trafficking protein par 30.6 1.8E+02 0.0061 25.7 8.0 74 84-168 25-101 (219)
467 2oo2_A Hypothetical protein AF 29.9 14 0.00048 28.5 0.6 34 208-241 28-61 (86)
468 3m7a_A Uncharacterized protein 29.5 20 0.00068 29.6 1.5 24 106-131 116-139 (140)
469 2uy1_A Cleavage stimulation fa 28.1 81 0.0028 29.7 5.7 35 215-249 14-48 (493)
470 3lvg_A Clathrin heavy chain 1; 26.9 2.3 7.8E-05 43.1 -5.5 44 220-274 149-192 (624)
471 1d7q_A Translation initiation 26.6 1.2E+02 0.0041 25.3 5.8 52 85-145 31-84 (143)
472 1vc3_B L-aspartate-alpha-decar 25.5 58 0.002 25.7 3.4 18 117-134 48-65 (96)
473 4a5x_A MITD1, MIT domain-conta 25.0 98 0.0034 23.1 4.6 23 228-250 36-58 (86)
474 2w2u_A Hypothetical P60 katani 24.1 45 0.0015 24.9 2.5 46 203-248 14-59 (83)
475 1pqh_A Aspartate 1-decarboxyla 23.4 1.3E+02 0.0043 25.3 5.3 18 117-134 89-106 (143)
476 3mv2_A Coatomer subunit alpha; 23.0 4.4E+02 0.015 24.6 9.5 44 219-262 210-254 (325)
477 2dl1_A Spartin; SPG20, MIT, st 22.1 1.9E+02 0.0066 23.3 6.0 18 220-237 39-58 (116)
478 1uhe_A Aspartate 1-decarboxyla 22.0 41 0.0014 26.6 1.9 17 118-134 47-63 (97)
479 3dor_A Protein CT_858, CPAF; m 21.6 1E+02 0.0034 31.1 5.1 37 95-136 86-122 (583)
480 1p3h_A 10 kDa chaperonin; beta 20.9 66 0.0023 25.1 3.0 12 123-134 61-72 (99)
481 3plx_B Aspartate 1-decarboxyla 20.6 45 0.0015 26.6 1.9 18 117-134 47-64 (102)
482 1ufb_A TT1696 protein; structu 20.4 1.7E+02 0.0058 22.1 5.3 34 208-241 4-37 (127)
483 2kpp_A LIN0431 protein; soluti 20.2 1.2E+02 0.004 24.2 4.3 47 86-132 30-79 (114)
No 1
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.01 E-value=7.9e-10 Score=85.83 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+..+.+.|+.+|+.|+|++||..|++||+++|++. .+|+|+|.||.++|++++|++.+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~---~~~~nlg~~~~~~~~~~~A~~~~ 65 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNI---TFYNNKAAVYFEEKKFAECVQFC 65 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHhHHHHHHHhhhHHHHHHHH
Confidence 34456899999999999999999999999999985 68999999999999999999865
No 2
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.00 E-value=6.4e-10 Score=86.66 Aligned_cols=80 Identities=9% Similarity=0.076 Sum_probs=65.7
Q ss_pred cCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCC
Q 023871 189 NSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ 267 (276)
Q Consensus 189 ~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq 267 (276)
..|++++|+ ..|.++-++... ..-++..|..++++|+|++|+..|++||+++|++. .+|+|++.||..+|+
T Consensus 25 ~~g~~~~A~-----~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~a~~~lg~~~~~~~~ 96 (126)
T 4gco_A 25 KKGDYPTAM-----RHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI---KGYIRKAACLVAMRE 96 (126)
T ss_dssp HTTCHHHHH-----HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTC
T ss_pred HcCCHHHHH-----HHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh---HHHHHHHHHHHHCCC
Confidence 667777774 455666666655 45578999999999999999999999999999985 589999999999999
Q ss_pred hhHHHhhhC
Q 023871 268 VPLLLALIE 276 (276)
Q Consensus 268 ~~eAI~aLE 276 (276)
+++|++.++
T Consensus 97 ~~~A~~~~~ 105 (126)
T 4gco_A 97 WSKAQRAYE 105 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998763
No 3
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.00 E-value=5.4e-10 Score=95.16 Aligned_cols=65 Identities=12% Similarity=0.085 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh-------hh--HHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 211 QKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTP-------EE--SSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 211 lkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~-------~e--~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
...++..+++.|+.+|+.|+|++||.+|++||+++|++ .. .+.+|+|++.|+.++|++++||.+.
T Consensus 7 ~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~ 80 (159)
T 2hr2_A 7 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSA 80 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 35578889999999999999999999999999999993 21 2459999999999999999999875
No 4
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.92 E-value=1.6e-09 Score=88.56 Aligned_cols=84 Identities=8% Similarity=-0.032 Sum_probs=70.2
Q ss_pred HHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871 185 RAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS 263 (276)
Q Consensus 185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya 263 (276)
..-...|++++++.. |+++-++... ..-|+..|..++..|+|++|+..|++|+.++|++. .+|||++.||.
T Consensus 44 ~~~~~~g~~~eA~~~-----~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~---~~~~~lg~~~~ 115 (151)
T 3gyz_A 44 YDFYNKGRIEEAEVF-----FRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY---TPVFHTGQCQL 115 (151)
T ss_dssp HHHHHTTCHHHHHHH-----HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC---HHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHH-----HHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc---HHHHHHHHHHH
Confidence 344478888888554 4555555554 45688999999999999999999999999999996 58999999999
Q ss_pred hcCChhHHHhhhC
Q 023871 264 KLNQVPLLLALIE 276 (276)
Q Consensus 264 KLgq~~eAI~aLE 276 (276)
++|++++|+.+++
T Consensus 116 ~lg~~~eA~~~~~ 128 (151)
T 3gyz_A 116 RLKAPLKAKECFE 128 (151)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 9999999998863
No 5
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.90 E-value=2.5e-09 Score=91.09 Aligned_cols=81 Identities=11% Similarity=0.004 Sum_probs=68.8
Q ss_pred hcCCCcchhHHHHHHHHHhhHHHHHHH-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-------CCC
Q 023871 188 RNSGVISNRVREIQMQNYMKKKEQKER-------------REQDLREGLQLYRTGKYEVAREKFESVLGS-------KPT 247 (276)
Q Consensus 188 r~~G~i~~al~Eiq~~nYkk~Kelkkq-------------ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i-------~P~ 247 (276)
...|++++++ ..|.++-++... ..-|.+.|..+.++|+|++||..|++||++ +|+
T Consensus 22 ~~~g~~eeAi-----~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 22 LVAGEYDEAA-----ANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHTCHHHHH-----HHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHCCCHHHHH-----HHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 3678888884 556666666655 236889999999999999999999999999 999
Q ss_pred hhhHHHHH----HHHhHHHHhcCChhHHHhhhC
Q 023871 248 PEESSVAS----YNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 248 ~~e~a~A~----YN~AcCyaKLgq~~eAI~aLE 276 (276)
+. .+| ||++.|+..+|++++|+.+++
T Consensus 97 ~~---~A~~~~~~~rG~aL~~lgr~eEAl~~y~ 126 (159)
T 2hr2_A 97 EG---KLWISAVYSRALALDGLGRGAEAMPEFK 126 (159)
T ss_dssp HH---HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hH---HHHHHHHHhHHHHHHHCCCHHHHHHHHH
Confidence 86 567 999999999999999999863
No 6
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.86 E-value=4.7e-09 Score=81.71 Aligned_cols=58 Identities=19% Similarity=0.379 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
++.+++.|+.+|+.|+|++|+..|++||+++|++. .+|+|+|.||.++|++++|++.+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~A~~~~ 70 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA---ILYSNRAACLTKLMEFQRALDDC 70 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHhhHHHhhccHHHHHHHH
Confidence 45677999999999999999999999999999996 68999999999999999999876
No 7
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.83 E-value=6.8e-09 Score=78.16 Aligned_cols=79 Identities=19% Similarity=0.159 Sum_probs=62.7
Q ss_pred cCCCcchhHHHHHHHHHhhHHHH----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh
Q 023871 189 NSGVISNRVREIQMQNYMKKKEQ----KERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK 264 (276)
Q Consensus 189 ~~G~i~~al~Eiq~~nYkk~Kel----kkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK 264 (276)
..|++++++. .|+++.++ .....-++..|..++..|+|++|+..|++||+++|++. .+++|++.||.+
T Consensus 2 ~~g~~~~A~~-----~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~ 73 (117)
T 3k9i_A 2 VLGLEAQAVP-----YYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ---ALRVFYAMVLYN 73 (117)
T ss_dssp -----CCCHH-----HHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHH
T ss_pred CCCcHHHHHH-----HHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch---HHHHHHHHHHHH
Confidence 3577788854 45555555 33345678999999999999999999999999999995 689999999999
Q ss_pred cCChhHHHhhh
Q 023871 265 LNQVPLLLALI 275 (276)
Q Consensus 265 Lgq~~eAI~aL 275 (276)
+|++++|+..|
T Consensus 74 ~g~~~~A~~~~ 84 (117)
T 3k9i_A 74 LGRYEQGVELL 84 (117)
T ss_dssp HTCHHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 99999999876
No 8
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.82 E-value=7.9e-09 Score=74.54 Aligned_cols=83 Identities=16% Similarity=0.195 Sum_probs=46.1
Q ss_pred hcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhh---HHHHHHHHhHHHH
Q 023871 188 RNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYS 263 (276)
Q Consensus 188 r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e---~a~A~YN~AcCya 263 (276)
...|++++++. .|+++.++... ..-+++.|..+++.|+|++|+..|++||.++|++.. ...++++++.||.
T Consensus 15 ~~~~~~~~A~~-----~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 89 (111)
T 2l6j_A 15 FKQGLYREAVH-----CYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQG 89 (111)
T ss_dssp HTTTCHHHHHH-----HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHH-----HHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 35555555533 33344444332 233556666666666666666666666666666521 1455666666666
Q ss_pred hcCChhHHHhhh
Q 023871 264 KLNQVPLLLALI 275 (276)
Q Consensus 264 KLgq~~eAI~aL 275 (276)
.+|++++|+..+
T Consensus 90 ~~~~~~~a~~~~ 101 (111)
T 2l6j_A 90 AVGSVQIPVVEV 101 (111)
T ss_dssp HHHCCCCCSSSS
T ss_pred HHHhHhhhHhHH
Confidence 666666665544
No 9
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.81 E-value=9.9e-09 Score=77.07 Aligned_cols=81 Identities=11% Similarity=0.041 Sum_probs=66.6
Q ss_pred hhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhc
Q 023871 187 ERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL 265 (276)
Q Consensus 187 ~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKL 265 (276)
-...|++++++. .|.++-++... ..-++..|..+++.|+|++|+..|++||.++|++. .+|+|++.||.++
T Consensus 14 ~~~~~~~~~A~~-----~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~ 85 (126)
T 3upv_A 14 YFTKSDWPNAVK-----AYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV---RAYIRKATAQIAV 85 (126)
T ss_dssp HHHTTCHHHHHH-----HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHH-----HHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHH
Confidence 347788888844 45555555544 35578999999999999999999999999999985 6899999999999
Q ss_pred CChhHHHhhh
Q 023871 266 NQVPLLLALI 275 (276)
Q Consensus 266 gq~~eAI~aL 275 (276)
|++++|+..+
T Consensus 86 ~~~~~A~~~~ 95 (126)
T 3upv_A 86 KEYASALETL 95 (126)
T ss_dssp TCHHHHHHHH
T ss_pred hCHHHHHHHH
Confidence 9999999876
No 10
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.74 E-value=3.7e-08 Score=73.89 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 214 qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.++.+++.|+.+++.|+|++|+..|++||.++|++. .+|+|+|.||.++|++++|+..+
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~ 61 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA---RGYSNRAAALAKLMSFPEAIADC 61 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhcCHHHHHHHH
Confidence 356788999999999999999999999999999985 68999999999999999999876
No 11
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.72 E-value=5.6e-08 Score=76.41 Aligned_cols=81 Identities=11% Similarity=-0.037 Sum_probs=66.5
Q ss_pred hcCCCcchhHHHHHHHHHhhHHHH------------------HHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh
Q 023871 188 RNSGVISNRVREIQMQNYMKKKEQ------------------KER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTP 248 (276)
Q Consensus 188 r~~G~i~~al~Eiq~~nYkk~Kel------------------kkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~ 248 (276)
...|++++++..++. +-++ ... ..-+.+.|..++++|+|++|+..|++||.++|++
T Consensus 22 ~~~~~~~~A~~~y~~-----al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~ 96 (162)
T 3rkv_A 22 FVQKDYKEAIDAYRD-----ALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETN 96 (162)
T ss_dssp HHTTCHHHHHHHHHH-----HHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHcCCHHHHHHHHHH-----HHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc
Confidence 378888888665554 4443 222 2346799999999999999999999999999998
Q ss_pred hhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 249 EESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 249 ~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
. .+||+++.||..+|++++|+..++
T Consensus 97 ~---~a~~~~g~~~~~~g~~~~A~~~~~ 121 (162)
T 3rkv_A 97 E---KALFRRAKARIAAWKLDEAEEDLK 121 (162)
T ss_dssp H---HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred h---HHHHHHHHHHHHHhcHHHHHHHHH
Confidence 5 699999999999999999998763
No 12
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.72 E-value=4.8e-08 Score=77.15 Aligned_cols=56 Identities=18% Similarity=0.152 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.++..|..+++.|+|++|+..|+++|+++|++. .+|+|++.||.++|++++|+..+
T Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~ 164 (184)
T 3vtx_A 109 AYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFI---RAYQSIGLAYEGKGLRDEAVKYF 164 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHhcchhh---hHHHHHHHHHHHCCCHHHHHHHH
Confidence 357889999999999999999999999999986 58999999999999999999876
No 13
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.71 E-value=3.7e-08 Score=76.46 Aligned_cols=83 Identities=13% Similarity=0.006 Sum_probs=68.0
Q ss_pred HhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh
Q 023871 186 AERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK 264 (276)
Q Consensus 186 ~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK 264 (276)
.-...|++++++..++ +..++... ..-|+..|..++..|+|++|+..|++|+.++|++. .+|+|++.||..
T Consensus 27 ~~~~~g~~~~A~~~~~-----~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~ 98 (142)
T 2xcb_A 27 NQYQAGKWDDAQKIFQ-----ALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP---RFPFHAAECHLQ 98 (142)
T ss_dssp HHHHTTCHHHHHHHHH-----HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---HHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHH-----HHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHH
Confidence 3447888988866654 44444433 34577899999999999999999999999999996 589999999999
Q ss_pred cCChhHHHhhhC
Q 023871 265 LNQVPLLLALIE 276 (276)
Q Consensus 265 Lgq~~eAI~aLE 276 (276)
+|++++|+..++
T Consensus 99 ~g~~~~A~~~~~ 110 (142)
T 2xcb_A 99 LGDLDGAESGFY 110 (142)
T ss_dssp TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 999999998763
No 14
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.71 E-value=3.6e-08 Score=78.51 Aligned_cols=84 Identities=12% Similarity=0.011 Sum_probs=68.5
Q ss_pred HHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871 185 RAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS 263 (276)
Q Consensus 185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya 263 (276)
..-...|++++++..++ ++-++... ..-|+..|..++..|+|++|+..|++|+.++|++. .+|||++.||.
T Consensus 29 ~~~~~~g~~~~A~~~~~-----~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~lg~~~~ 100 (148)
T 2vgx_A 29 FNQYQSGXYEDAHXVFQ-----ALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP---RFPFHAAECLL 100 (148)
T ss_dssp HHHHHTTCHHHHHHHHH-----HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT---HHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHH-----HHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc---hHHHHHHHHHH
Confidence 33447888888865554 44444433 34578999999999999999999999999999986 58999999999
Q ss_pred hcCChhHHHhhhC
Q 023871 264 KLNQVPLLLALIE 276 (276)
Q Consensus 264 KLgq~~eAI~aLE 276 (276)
.+|++++|+..++
T Consensus 101 ~~g~~~~A~~~~~ 113 (148)
T 2vgx_A 101 QXGELAEAESGLF 113 (148)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 9999999998763
No 15
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.71 E-value=5.3e-09 Score=81.12 Aligned_cols=82 Identities=11% Similarity=0.054 Sum_probs=67.1
Q ss_pred cCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh----hHHHHHHHHhHHHH
Q 023871 189 NSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE----ESSVASYNVACCYS 263 (276)
Q Consensus 189 ~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~----e~a~A~YN~AcCya 263 (276)
..|++++|+ ..|.++-++... ..-+.+.|..++++|+|++||..|++||+++|+.. ....+|+|++.||.
T Consensus 20 ~~~~~~~A~-----~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~ 94 (127)
T 4gcn_A 20 KQKDFEKAH-----VHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQ 94 (127)
T ss_dssp HTTCHHHHH-----HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHH-----HHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 566777774 556666666655 34567999999999999999999999999988763 23678999999999
Q ss_pred hcCChhHHHhhh
Q 023871 264 KLNQVPLLLALI 275 (276)
Q Consensus 264 KLgq~~eAI~aL 275 (276)
.++++++|++.+
T Consensus 95 ~~~~~~~A~~~~ 106 (127)
T 4gcn_A 95 KQNDLSLAVQWF 106 (127)
T ss_dssp HTTCHHHHHHHH
T ss_pred HcCCHHHHHHHH
Confidence 999999999865
No 16
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.71 E-value=2.9e-08 Score=78.03 Aligned_cols=63 Identities=17% Similarity=0.259 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--------CCCh-------hhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 213 ERREQDLREGLQLYRTGKYEVAREKFESVLGS--------KPTP-------EESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 213 kqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i--------~P~~-------~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
++++.+++.|+.+|+.|+|++|+..|++||.+ +|.+ +....+|+|+|.||.++|++++|+..+
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~ 86 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS 86 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 34566789999999999999999999999988 4443 223678999999999999999999865
No 17
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.69 E-value=5.3e-08 Score=76.67 Aligned_cols=83 Identities=11% Similarity=-0.080 Sum_probs=68.3
Q ss_pred HHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871 185 RAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS 263 (276)
Q Consensus 185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya 263 (276)
..-...|++++++..++ ++.++... ..-++..|..+++.|+|++|+..|++||.++|++. .+|+|++.||.
T Consensus 19 ~~~~~~g~~~~A~~~~~-----~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~ 90 (164)
T 3sz7_A 19 NAAMARKEYSKAIDLYT-----QALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYS---KAWSRLGLARF 90 (164)
T ss_dssp HHHHHTTCHHHHHHHHH-----HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHH-----HHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHH
Confidence 34447889988865554 44444433 34567999999999999999999999999999985 68999999999
Q ss_pred hcCChhHHHhhh
Q 023871 264 KLNQVPLLLALI 275 (276)
Q Consensus 264 KLgq~~eAI~aL 275 (276)
++|++++|+..+
T Consensus 91 ~~g~~~~A~~~~ 102 (164)
T 3sz7_A 91 DMADYKGAKEAY 102 (164)
T ss_dssp HTTCHHHHHHHH
T ss_pred HccCHHHHHHHH
Confidence 999999999876
No 18
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.67 E-value=3.4e-08 Score=73.32 Aligned_cols=58 Identities=12% Similarity=0.129 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
..++..|..+++.|+|++|+..|++||+++|++. .+|+|++.||.++|++++|++.++
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~lg~~~~~~g~~~~A~~~~~ 65 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYV---GTYYHLGKLYERLDRTDDAIDTYA 65 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT---HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4467999999999999999999999999999986 589999999999999999998763
No 19
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.66 E-value=1.4e-08 Score=82.96 Aligned_cols=70 Identities=13% Similarity=0.033 Sum_probs=61.0
Q ss_pred HHHhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 203 QNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 203 ~nYkk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
..|+++.++...- +.++..|..+++.|+|++|+..|++|+.++|++. .+|+|++.||.++|++++|++++
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~---~~~~~lg~~~~~~g~~~~Ai~~~ 93 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNV---DYIMGLAAIYQIKEQFQQAADLY 93 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHccHHHHHHHH
Confidence 3455666666653 5678999999999999999999999999999996 58999999999999999999876
No 20
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=98.65 E-value=7.6e-08 Score=71.97 Aligned_cols=82 Identities=20% Similarity=0.400 Sum_probs=61.6
Q ss_pred cceEEEEecC----cceeEEeeeC-CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhccc
Q 023871 84 YEEYEVEIEQ----PYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV 158 (276)
Q Consensus 84 ~~~y~V~l~K----PLGl~f~e~~-dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~ 158 (276)
++.++|+|.| ++|+.+.... +.+++|..|.|+|.|+++|.+++||+|+++... .+=. .....+...++...
T Consensus 3 ~~~~~v~l~k~~~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~---~v~~-~~~~~~~~~~~~~~ 78 (92)
T 2qg1_A 3 SDTLTIGLQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGE---DVRN-ATQEAVAALLKCSL 78 (92)
T ss_dssp -CEEEEEEECCTTSCCSEEEECCSSSCSCEEEEECTTSHHHHHTCCCTTCEEEEETTE---ECTT-CCHHHHHHHHHHCC
T ss_pred ceEEEEEEEeCCCCcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECCC-CCHHHHHHHHHcCC
Confidence 4678999987 4889987764 359999999999999999999999999998753 1111 11345566666656
Q ss_pred CceEEEEeecC
Q 023871 159 GPLLMKMQKRY 169 (276)
Q Consensus 159 gpv~L~l~R~~ 169 (276)
+++.|.+.|+-
T Consensus 79 ~~v~l~v~R~~ 89 (92)
T 2qg1_A 79 GTVTLEVGRIS 89 (92)
T ss_dssp SEEEEEEECCC
T ss_pred CeEEEEEEccc
Confidence 78999998853
No 21
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.64 E-value=4.1e-08 Score=77.89 Aligned_cols=67 Identities=15% Similarity=0.015 Sum_probs=38.5
Q ss_pred HHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHh
Q 023871 204 NYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLA 273 (276)
Q Consensus 204 nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~ 273 (276)
.|+++-++... .+.++..|..+++.|+|++|+..|++||+++|++. .+|+|+|.||.++|++++|+.
T Consensus 53 ~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~aa~ 120 (150)
T 4ga2_A 53 YICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQK---DLVLKIAELLCKNDVTDGRAK 120 (150)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHCSSSSHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHH
Confidence 34444444433 23345666666666666666666666666666654 356666666666666655543
No 22
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.63 E-value=5.9e-08 Score=71.92 Aligned_cols=87 Identities=10% Similarity=0.084 Sum_probs=68.7
Q ss_pred HHhhcCCCcchhHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhH
Q 023871 185 RAERNSGVISNRVREIQMQNYMKKKEQKER----REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC 260 (276)
Q Consensus 185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq----ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~Ac 260 (276)
..-...|++++++..++. ..+.... .+.++..|..+++.|+|++|+..|++++...|++.....++++++.
T Consensus 10 ~~~~~~~~~~~A~~~~~~-----~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLS-----FLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHTTCHHHHHHHHHH-----HHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHH-----HHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 344467888888776665 2221111 1346789999999999999999999999999998655678999999
Q ss_pred HHHhcCChhHHHhhhC
Q 023871 261 CYSKLNQVPLLLALIE 276 (276)
Q Consensus 261 CyaKLgq~~eAI~aLE 276 (276)
||.++|++++|+..++
T Consensus 85 ~~~~~g~~~~A~~~~~ 100 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQ 100 (129)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 9999999999998763
No 23
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=98.63 E-value=1.2e-07 Score=71.48 Aligned_cols=82 Identities=18% Similarity=0.287 Sum_probs=61.8
Q ss_pred cceEEEEecCc-----ceeEEeeeC-CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc
Q 023871 84 YEEYEVEIEQP-----YGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR 157 (276)
Q Consensus 84 ~~~y~V~l~KP-----LGl~f~e~~-dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r 157 (276)
++.++|+|.|+ +|+.+.... +.+++|..|.|+|.|+++|.|++||+|+.+... .+= ....-.+...++..
T Consensus 2 ~~~~~v~l~k~~~~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~---~v~-~~~~~~~~~~~~~~ 77 (95)
T 2vwr_A 2 MEILQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGH---DLK-YGTPELAAQIIQAS 77 (95)
T ss_dssp EEEEEEEEECSSTTCCCCEEEEECSSSCSEEEEEECTTSHHHHHCCCCTTCEEEEETTE---ECT-TCCHHHHHHHHHHC
T ss_pred cEEEEEEEEECCCCCcccEEEEeccCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCE---ECC-CCCHHHHHHHHHcC
Confidence 36789999973 899997764 449999999999999999999999999998742 221 11223455566655
Q ss_pred cCceEEEEeecC
Q 023871 158 VGPLLMKMQKRY 169 (276)
Q Consensus 158 ~gpv~L~l~R~~ 169 (276)
..++.|.+.|..
T Consensus 78 g~~v~l~v~R~~ 89 (95)
T 2vwr_A 78 GERVNLTIARPG 89 (95)
T ss_dssp CSEEEEEEEEES
T ss_pred CCEEEEEEEcCC
Confidence 678899999853
No 24
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.62 E-value=5.7e-08 Score=74.84 Aligned_cols=84 Identities=11% Similarity=-0.014 Sum_probs=69.4
Q ss_pred HHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871 185 RAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS 263 (276)
Q Consensus 185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya 263 (276)
..-...|++++++..+ +++-++... .+.|+..|..++..|+|++|+..|++||+++|++. .+|+|++.||.
T Consensus 25 ~~~~~~g~~~~A~~~~-----~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~la~~~~ 96 (121)
T 1hxi_A 25 LSMLKLANLAEAALAF-----EAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI---AVHAALAVSHT 96 (121)
T ss_dssp HHHHHTTCHHHHHHHH-----HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHH-----HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHH
Confidence 4445778888885554 455555443 45678999999999999999999999999999986 58999999999
Q ss_pred hcCChhHHHhhhC
Q 023871 264 KLNQVPLLLALIE 276 (276)
Q Consensus 264 KLgq~~eAI~aLE 276 (276)
++|++++|+..++
T Consensus 97 ~~g~~~~A~~~~~ 109 (121)
T 1hxi_A 97 NEHNANAALASLR 109 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 9999999998763
No 25
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.60 E-value=8.5e-08 Score=75.49 Aligned_cols=59 Identities=19% Similarity=0.144 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 214 qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
..+.++..|+.+++.|+|++|+..|++||.++|++. .+|+|++.||.++|++++|+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~ 68 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP---IYLSNRAAAYSASGQHEKAAEDA 68 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH---HHHHHHHHHHHHccCHHHHHHHH
Confidence 456678999999999999999999999999999985 68999999999999999999876
No 26
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.57 E-value=1.8e-07 Score=66.20 Aligned_cols=84 Identities=13% Similarity=0.057 Sum_probs=66.9
Q ss_pred HHHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC--hhhHHHHHHHHhH
Q 023871 184 IRAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPT--PEESSVASYNVAC 260 (276)
Q Consensus 184 ~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~--~~e~a~A~YN~Ac 260 (276)
...-...|++++++..++ ++.++... ..-++..|..++..|+|++|+..|++++.++|+ +. .+|+++|.
T Consensus 13 ~~~~~~~~~~~~A~~~~~-----~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~~~l~~ 84 (112)
T 2kck_A 13 GVLQYDAGNYTESIDLFE-----KAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK---DVWAAKAD 84 (112)
T ss_dssp HHHHHSSCCHHHHHHHHH-----HHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCH---HHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHH-----HHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchH---HHHHHHHH
Confidence 344557788888855554 33333322 344678999999999999999999999999999 54 68999999
Q ss_pred HHHhc-CChhHHHhhh
Q 023871 261 CYSKL-NQVPLLLALI 275 (276)
Q Consensus 261 CyaKL-gq~~eAI~aL 275 (276)
||.++ |++++|++.|
T Consensus 85 ~~~~~~~~~~~A~~~~ 100 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAE 100 (112)
T ss_dssp HHTTCSSCSHHHHHHH
T ss_pred HHHHHhCCHHHHHHHH
Confidence 99999 9999999876
No 27
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=98.57 E-value=2e-07 Score=70.28 Aligned_cols=80 Identities=20% Similarity=0.388 Sum_probs=63.4
Q ss_pred ceEEEEecC---cceeEEeeeC------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceeccc--chhHHHH
Q 023871 85 EEYEVEIEQ---PYGLKFAKGR------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYT 153 (276)
Q Consensus 85 ~~y~V~l~K---PLGl~f~e~~------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~--~g~~~~a 153 (276)
+.++|+|.| ++|+.+..+. +.+++|..|.|++.|+++|.|++||+|+.+... +..+ +..+...
T Consensus 3 ~~~~v~l~k~~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~------~v~~~~~~~~~~~ 76 (97)
T 2jil_A 3 RTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGI------RLLGTTHAEAMSI 76 (97)
T ss_dssp EEEEEEEECBTTBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTE------ECSSCCHHHHHHH
T ss_pred eEEEEEEEeCCCccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCE------ECCCCCHHHHHHH
Confidence 568888887 6899998764 349999999999999999999999999998742 2233 5566777
Q ss_pred hhcccCceEEEEeecCC
Q 023871 154 IRQRVGPLLMKMQKRYG 170 (276)
Q Consensus 154 ir~r~gpv~L~l~R~~~ 170 (276)
|+....++.|.+.|...
T Consensus 77 l~~~g~~v~l~v~R~~~ 93 (97)
T 2jil_A 77 LKQCGQEAALLIEYDVS 93 (97)
T ss_dssp HHHSCSEEEEEEEEECC
T ss_pred HHcCCCeEEEEEEeCCC
Confidence 77756788999999654
No 28
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=1.8e-07 Score=69.96 Aligned_cols=84 Identities=8% Similarity=-0.003 Sum_probs=69.0
Q ss_pred HHHhhcCCCcchhHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHh
Q 023871 184 IRAERNSGVISNRVREIQMQNYMKKKEQKER----REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVA 259 (276)
Q Consensus 184 ~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq----ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~A 259 (276)
...-...|++++++..++. ..++... ..-++..|..++..|+|++|+..|++++.++|++. .+|++++
T Consensus 35 a~~~~~~~~~~~A~~~~~~-----a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~a 106 (148)
T 2dba_A 35 GNELFKCGDYGGALAAYTQ-----ALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDV---KALYRRS 106 (148)
T ss_dssp HHHHHTTTCHHHHHHHHHH-----HHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCH---HHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHH-----HHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCH---HHHHHHH
Confidence 3445589999999665554 3333322 45678999999999999999999999999999884 6899999
Q ss_pred HHHHhcCChhHHHhhh
Q 023871 260 CCYSKLNQVPLLLALI 275 (276)
Q Consensus 260 cCyaKLgq~~eAI~aL 275 (276)
.||..+|++++|+..+
T Consensus 107 ~~~~~~~~~~~A~~~~ 122 (148)
T 2dba_A 107 QALEKLGRLDQAVLDL 122 (148)
T ss_dssp HHHHHHTCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHH
Confidence 9999999999999876
No 29
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.56 E-value=2.3e-07 Score=69.44 Aligned_cols=84 Identities=8% Similarity=-0.061 Sum_probs=68.3
Q ss_pred HHHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHH
Q 023871 184 IRAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY 262 (276)
Q Consensus 184 ~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCy 262 (276)
...-...|++++++..++. +.++... ..-++..|..++..|+|++|+..|++|+.++|++. .+|+|++.||
T Consensus 16 g~~~~~~~~~~~A~~~~~~-----al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~ 87 (137)
T 3q49_B 16 GNRLFVGRKYPEAAACYGR-----AITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV---KAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHH-----HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHH-----HHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhH---HHHHHHHHHH
Confidence 3445578888888665544 4444333 34567999999999999999999999999999985 5899999999
Q ss_pred HhcCChhHHHhhh
Q 023871 263 SKLNQVPLLLALI 275 (276)
Q Consensus 263 aKLgq~~eAI~aL 275 (276)
.++|++++|+..+
T Consensus 88 ~~~~~~~~A~~~~ 100 (137)
T 3q49_B 88 LEMESYDEAIANL 100 (137)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHHhhHHHHHHHH
Confidence 9999999999876
No 30
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=98.55 E-value=2e-07 Score=70.99 Aligned_cols=84 Identities=14% Similarity=0.247 Sum_probs=62.8
Q ss_pred ccccceEEEEecC----cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc
Q 023871 81 EEKYEEYEVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ 156 (276)
Q Consensus 81 ~~~~~~y~V~l~K----PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~ 156 (276)
+..++.++|+|.| .+|+.+.. .+.+++|..|.|+|.|+++|.|++||+|+++... .+-.. ..-.+...++.
T Consensus 4 ~~~~~~~~v~l~~~~~~glG~~~~~-~~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~---~v~~~-~~~~~~~~~~~ 78 (96)
T 2qkv_A 4 RNSLEKFNVDLMKKAGKELGLSLSP-NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGD---ALEGL-PFQVSYALFKG 78 (96)
T ss_dssp CCCCCCEEEEEECBTTBCCCEEEEE-CSSSEEEEEECTTSCHHHHHHCCTTCEEEEETTE---ECTTC-CHHHHHHHHHT
T ss_pred hHHCceEEEEEEeCCCCCccEEEEe-CCCcEEEEEeCCCChHHhcCCCCCCCEEEEECCE---ECCCC-CHHHHHHHHhc
Confidence 3456778999965 68888766 4568999999999999999999999999998743 22111 12344556666
Q ss_pred ccCceEEEEeecC
Q 023871 157 RVGPLLMKMQKRY 169 (276)
Q Consensus 157 r~gpv~L~l~R~~ 169 (276)
..+++.|.+.|+.
T Consensus 79 ~~~~v~l~v~R~~ 91 (96)
T 2qkv_A 79 ANGKVSMEVTRPK 91 (96)
T ss_dssp CSSEEEEEEECCC
T ss_pred CCCcEEEEEEeCC
Confidence 6688999999864
No 31
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=98.54 E-value=2.7e-07 Score=69.88 Aligned_cols=81 Identities=21% Similarity=0.439 Sum_probs=62.2
Q ss_pred ceEEEEecC---cceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccC
Q 023871 85 EEYEVEIEQ---PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG 159 (276)
Q Consensus 85 ~~y~V~l~K---PLGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~g 159 (276)
+.++|+|.| ++|+.+....+ ++++|..|.|++.|+++|.|++||+|+++-.. .+-. ..+..+...++....
T Consensus 5 ~~~~v~l~~~~~~lG~~i~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~---~v~~-~~~~~~~~~l~~~g~ 80 (97)
T 1n7e_A 5 IIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSS---SLKG-KPLSEAIHLLQMAGE 80 (97)
T ss_dssp CEEEEEEECTTSCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTE---ECTT-CCHHHHHHHHHTCCS
T ss_pred eEEEEEEEeCCCCcCEEEEcccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCE---ECCC-CCHHHHHHHHHcCCC
Confidence 678999987 68899877654 69999999999999999999999999998753 3311 124556667775456
Q ss_pred ceEEEEeecC
Q 023871 160 PLLMKMQKRY 169 (276)
Q Consensus 160 pv~L~l~R~~ 169 (276)
++.|.+.|..
T Consensus 81 ~v~l~v~R~~ 90 (97)
T 1n7e_A 81 TVTLKIKKQT 90 (97)
T ss_dssp EEEEEEECCC
T ss_pred eEEEEEEeCC
Confidence 7899998843
No 32
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.54 E-value=1.1e-07 Score=68.48 Aligned_cols=54 Identities=26% Similarity=0.289 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHH-HHHHHhHHHHhcCChhHHHhhh
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSV-ASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~-A~YN~AcCyaKLgq~~eAI~aL 275 (276)
++.|..+++.|+|++|+..|+++++++|++. . +|+|+|.||.++|++++|+..+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~lg~~~~~~~~~~~A~~~~ 58 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGK---DEAYYLMGNAYRKLGDWQKALNNY 58 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTH---HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH---HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5788899999999999999999999999885 5 8999999999999999998876
No 33
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.54 E-value=4.9e-07 Score=69.55 Aligned_cols=84 Identities=23% Similarity=0.445 Sum_probs=65.0
Q ss_pred ccceEEEEec---CcceeEEeeeCC--------CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHH
Q 023871 83 KYEEYEVEIE---QPYGLKFAKGRD--------GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTM 151 (276)
Q Consensus 83 ~~~~y~V~l~---KPLGl~f~e~~d--------Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~ 151 (276)
..+.++|+|. +++|+.+..+.+ .++||..|.+++.|+++|.|++||+|+.+... .+= ...+..+.
T Consensus 5 ~~~~~~v~l~~~~~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~---~v~-~~~~~~~~ 80 (105)
T 1wha_A 5 SSGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGV---DVT-EARHDHAV 80 (105)
T ss_dssp CCEEEEEEECCCTTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSC---BCT-TCCHHHHH
T ss_pred CCeeEEEEEEeCCCccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCE---ECC-CCCHHHHH
Confidence 4577889885 468899987543 59999999999999999999999999998742 221 11255677
Q ss_pred HHhhcccCceEEEEeecCC
Q 023871 152 YTIRQRVGPLLMKMQKRYG 170 (276)
Q Consensus 152 ~air~r~gpv~L~l~R~~~ 170 (276)
..|+....++.|.+.|...
T Consensus 81 ~~l~~~g~~v~l~v~R~~~ 99 (105)
T 1wha_A 81 SLLTAASPTIALLLEREAG 99 (105)
T ss_dssp HHHTSCCSCEEEEEEECCC
T ss_pred HHHHcCCCeEEEEEEECCC
Confidence 7787667789999999753
No 34
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.53 E-value=2.7e-07 Score=76.81 Aligned_cols=89 Identities=11% Similarity=0.110 Sum_probs=69.5
Q ss_pred hhcCCCcchhHHHHHH-----HH-------HhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHH
Q 023871 187 ERNSGVISNRVREIQM-----QN-------YMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSV 253 (276)
Q Consensus 187 ~r~~G~i~~al~Eiq~-----~n-------Ykk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~ 253 (276)
.++.|++++++..++. ++ +.+...+.... +..+..|..+++.|+|++|+..|+++|+..|+++....
T Consensus 106 ~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 185 (225)
T 2yhc_A 106 DRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRD 185 (225)
T ss_dssp --CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHH
Confidence 3467788888888877 11 22333333332 22357888999999999999999999999999987778
Q ss_pred HHHHHhHHHHhcCChhHHHhhh
Q 023871 254 ASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 254 A~YN~AcCyaKLgq~~eAI~aL 275 (276)
++++++.||.++|++++|++.+
T Consensus 186 a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 186 ALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHH
Confidence 9999999999999999999876
No 35
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=98.53 E-value=7.5e-07 Score=68.31 Aligned_cols=80 Identities=19% Similarity=0.340 Sum_probs=59.1
Q ss_pred eEEEEecC----cceeEEeeeCCC----CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-
Q 023871 86 EYEVEIEQ----PYGLKFAKGRDG----GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ- 156 (276)
Q Consensus 86 ~y~V~l~K----PLGl~f~e~~dG----gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~- 156 (276)
..+|+|.| +||+.+.....| +++|..|.+++.|+++|.|++||+|+++.. ..+ .-..+.++...|+.
T Consensus 10 ~~~v~l~k~~g~~lG~~i~~~~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing---~~v-~~~~~~~~~~~l~~~ 85 (101)
T 2yt7_A 10 CREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAING---TSL-VGLPLAACQAAVRET 85 (101)
T ss_dssp CEEEEEECCTTCCCCEEEEECCCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESS---CBC-TTSCHHHHHHHHHHT
T ss_pred eEEEEEEeCCCCccCEEEEeCCCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECC---EEC-CCCCHHHHHHHHHhC
Confidence 34556553 799999765544 799999999999999777999999999863 344 00234456667775
Q ss_pred -ccCceEEEEeecC
Q 023871 157 -RVGPLLMKMQKRY 169 (276)
Q Consensus 157 -r~gpv~L~l~R~~ 169 (276)
...++.|++.|..
T Consensus 86 ~~g~~v~l~v~R~~ 99 (101)
T 2yt7_A 86 KSQTSVTLSIVHCP 99 (101)
T ss_dssp TTSSEEEEEECCCC
T ss_pred CCCCeEEEEEEeCC
Confidence 4567899999865
No 36
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.52 E-value=8.3e-08 Score=76.12 Aligned_cols=79 Identities=8% Similarity=0.106 Sum_probs=62.7
Q ss_pred cCCCcchhHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCC
Q 023871 189 NSGVISNRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ 267 (276)
Q Consensus 189 ~~G~i~~al~Eiq~~nYkk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq 267 (276)
..|++++++..++ ++-....+. ..++.-|..+++.|+|++|+..|++||+++|++. .+|+|++.||.++|+
T Consensus 9 ~~~~~e~ai~~~~-----~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~---~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 9 SKADVERYIASVQ-----GSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP---KAHRFLGLLYELEEN 80 (150)
T ss_dssp CHHHHHHHHHHHH-----HHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTC
T ss_pred HcChHHHHHHHHH-----HhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCc
Confidence 4455566655444 333333332 3457889999999999999999999999999996 689999999999999
Q ss_pred hhHHHhhh
Q 023871 268 VPLLLALI 275 (276)
Q Consensus 268 ~~eAI~aL 275 (276)
+++|+..+
T Consensus 81 ~~~A~~~~ 88 (150)
T 4ga2_A 81 TDKAVECY 88 (150)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 99999876
No 37
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=98.51 E-value=2.8e-07 Score=71.74 Aligned_cols=78 Identities=17% Similarity=0.340 Sum_probs=59.9
Q ss_pred EEEEecC----cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceE
Q 023871 87 YEVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL 162 (276)
Q Consensus 87 y~V~l~K----PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~ 162 (276)
..|+|.| +||+.+....+++++|..|.|+|.|+++|.|++||+|+.+... .+.. ..+..+...|+...+++.
T Consensus 14 ~~v~l~K~~~~~lG~~l~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~---~v~~-~~~~~~~~~l~~~~~~v~ 89 (97)
T 2ejy_A 14 RLIQFEKVTEEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGT---NVTN-HSVDQLQKAMKETKGMIS 89 (97)
T ss_dssp EEEEEEECSSSCCSEEEEECTTCCEEEEEECSSSHHHHHTCCCTTCEEEEETTB---CCCS-SCSHHHHHHHHHCCEEEE
T ss_pred EEEEEEeCCCCCeeEEEEeCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCE---ECCC-CCHHHHHHHHHcCCCeEE
Confidence 3566665 8899998766789999999999999999999999999998742 3321 124556667776567888
Q ss_pred EEEeec
Q 023871 163 MKMQKR 168 (276)
Q Consensus 163 L~l~R~ 168 (276)
|++.+.
T Consensus 90 L~V~~~ 95 (97)
T 2ejy_A 90 LKVIPN 95 (97)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 888764
No 38
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.51 E-value=1.3e-07 Score=75.30 Aligned_cols=68 Identities=18% Similarity=0.182 Sum_probs=58.4
Q ss_pred HhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 205 YMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 205 Ykk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
|+++.++... .+.++..|..+++.|+|++|+..|++|+.++|++. .+|+|++.||.++|++++|+.++
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~ 78 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS---RFFLGLGACRQAMGQYDLAIHSY 78 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH---HHHHHHHHHHHHHhhHHHHHHHH
Confidence 4555554443 35567999999999999999999999999999986 68999999999999999999876
No 39
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=98.50 E-value=3.9e-07 Score=68.03 Aligned_cols=81 Identities=19% Similarity=0.427 Sum_probs=61.7
Q ss_pred cceEEEEecCc---ceeEEeeeC------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHh
Q 023871 84 YEEYEVEIEQP---YGLKFAKGR------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI 154 (276)
Q Consensus 84 ~~~y~V~l~KP---LGl~f~e~~------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~ai 154 (276)
.+.++|+|.|+ +|+.+.... +++++|..|.+++.|+++|.|++||+|+++... .+= ...+..+...+
T Consensus 3 ~~~~~v~l~~~~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~---~v~-~~~~~~~~~~~ 78 (97)
T 2iwn_A 3 SETFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGT---NLQ-GFTNQQAVEVL 78 (97)
T ss_dssp EEEEEEEEECBTTBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTE---ECT-TSCHHHHHHHH
T ss_pred cEEEEEEEecCCCCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCE---ECC-CCCHHHHHHHH
Confidence 46788999887 899998762 469999999999999999999999999998752 111 01233556666
Q ss_pred hcccCceEEEEeec
Q 023871 155 RQRVGPLLMKMQKR 168 (276)
Q Consensus 155 r~r~gpv~L~l~R~ 168 (276)
+....++.|.+.|.
T Consensus 79 ~~~~~~v~l~v~r~ 92 (97)
T 2iwn_A 79 RHTGQTVLLTLMRR 92 (97)
T ss_dssp HTCCSEEEEEEEEE
T ss_pred HcCCCeEEEEEEeC
Confidence 66567789999874
No 40
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=1.9e-07 Score=69.83 Aligned_cols=61 Identities=30% Similarity=0.396 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.+.++..|..++..|+|++|+..|++++.++|++.....+|+|+|.||.+++++++|+..+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 88 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEA 88 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 3456688999999999999999999999999998666788999999999999999998865
No 41
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.49 E-value=2.5e-07 Score=69.20 Aligned_cols=58 Identities=26% Similarity=0.291 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.+.++..|..+++.|+|++|+..|+++|.++|++. .+|+|++.||.++|++++|+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~ 66 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA---VYYTNRALCYLKMQQPEQALADC 66 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcH---HHHHHHHHHHHHhcCHHHHHHHH
Confidence 45678999999999999999999999999999985 68999999999999999999876
No 42
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=98.48 E-value=9.8e-07 Score=69.02 Aligned_cols=81 Identities=15% Similarity=0.236 Sum_probs=61.3
Q ss_pred ceEEEEec----CcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCc
Q 023871 85 EEYEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP 160 (276)
Q Consensus 85 ~~y~V~l~----KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gp 160 (276)
+.++|+|. ..+|+.+.. .+.|++|..|.|||.|+++|.|++||+|+++... .+-.. ..-.+...++...++
T Consensus 2 ~~~~v~L~k~~~~glG~~i~~-~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~---~v~~~-~~~~~~~~~~~~~~~ 76 (106)
T 2la8_A 2 EKFNVDLMKKAGKELGLSLSP-NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGD---ALEGL-PFQVCYALFKGANGK 76 (106)
T ss_dssp EEEEEEECCBSSSTTCCEEEE-CSSSEEEEECCTTSCHHHHTTCCTTCEEEEESSC---BCSSS-CHHHHHHHHHSCBSC
T ss_pred eEEEEEEEeCCCCccCEEEEe-CCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCE---ECCCC-CHHHHHHHHhCCCCe
Confidence 56888887 358888876 4568999999999999999999999999997643 33221 123445566766788
Q ss_pred eEEEEeecCC
Q 023871 161 LLMKMQKRYG 170 (276)
Q Consensus 161 v~L~l~R~~~ 170 (276)
+.|.+.|+..
T Consensus 77 v~l~v~R~~~ 86 (106)
T 2la8_A 77 VSMEVTRPKP 86 (106)
T ss_dssp EEEEEEECCS
T ss_pred EEEEEEeCCC
Confidence 9999999643
No 43
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.47 E-value=6.5e-07 Score=69.02 Aligned_cols=85 Identities=28% Similarity=0.501 Sum_probs=64.6
Q ss_pred cccceEEEEecC---cceeEEe-----ee-----CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccch
Q 023871 82 EKYEEYEVEIEQ---PYGLKFA-----KG-----RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYG 148 (276)
Q Consensus 82 ~~~~~y~V~l~K---PLGl~f~-----e~-----~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g 148 (276)
.+.+.++|+|.| +||+.+. .+ .++++||..|.++|.|+++|.|++||+|+.+... .+=. ..+-
T Consensus 6 ~~~~~~~v~l~k~~~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~---~v~~-~~~~ 81 (108)
T 1q7x_A 6 KPGDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGV---SLEG-ATHK 81 (108)
T ss_dssp CSSSEEEEEEESSSCSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTE---ECBS-CTTS
T ss_pred CCCcEEEEEEEECCCCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCE---ECCC-CCHH
Confidence 345779999976 7999998 32 2469999999999999999999999999998742 2211 1444
Q ss_pred hHHHHhhcccCceEEEEeecCC
Q 023871 149 RTMYTIRQRVGPLLMKMQKRYG 170 (276)
Q Consensus 149 ~~~~air~r~gpv~L~l~R~~~ 170 (276)
.+...++....++.|.+.|...
T Consensus 82 ~~~~~~~~~g~~v~l~v~R~~~ 103 (108)
T 1q7x_A 82 QAVETLRNTGQVVHLLLEKGQS 103 (108)
T ss_dssp HHHHHHHHTTSEEEEEEECCCC
T ss_pred HHHHHHHcCCCeEEEEEEeCCc
Confidence 5666777656788999998544
No 44
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=98.47 E-value=8e-07 Score=67.09 Aligned_cols=80 Identities=23% Similarity=0.370 Sum_probs=62.0
Q ss_pred ceEEEEecC---cceeEEeeeCC---CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceeccc--chhHHHHhhc
Q 023871 85 EEYEVEIEQ---PYGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIRQ 156 (276)
Q Consensus 85 ~~y~V~l~K---PLGl~f~e~~d---Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~--~g~~~~air~ 156 (276)
++++|+|.| ++|+.+..+.+ ++++|..|.+++.|+++|.|++||+|+++... +..+ +.+++..++.
T Consensus 4 ~~~~v~l~~~~~~lG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~------~v~~~~~~~~~~~~~~ 77 (98)
T 2opg_A 4 CETTIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGI------DLRKATHDEAINVLRQ 77 (98)
T ss_dssp EEEEEEEECBTTBTCEEEEECTTSTTCSEEEEEECTTSHHHHHCCCCTTCEEEEETTE------ECTTCCHHHHHHHHHT
T ss_pred CEEEEEEEECCCcccEEEecCCCCCCCCEEEEEECCCChHHhCCCCCCCCEEEEECCE------ECCCCCHHHHHHHHHh
Confidence 457788865 58899987755 79999999999999999999999999998742 2222 3456667775
Q ss_pred ccCceEEEEeecCC
Q 023871 157 RVGPLLMKMQKRYG 170 (276)
Q Consensus 157 r~gpv~L~l~R~~~ 170 (276)
...++.|.+.|...
T Consensus 78 ~~~~v~l~v~R~~~ 91 (98)
T 2opg_A 78 TPQRVRLTLYRDEA 91 (98)
T ss_dssp CCSEEEEEEEECSS
T ss_pred CCCeEEEEEEcCCC
Confidence 55789999988544
No 45
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=98.47 E-value=7.1e-07 Score=66.49 Aligned_cols=81 Identities=21% Similarity=0.329 Sum_probs=59.8
Q ss_pred ccceEEEEecC-----cceeEEeeeC-CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc
Q 023871 83 KYEEYEVEIEQ-----PYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ 156 (276)
Q Consensus 83 ~~~~y~V~l~K-----PLGl~f~e~~-dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~ 156 (276)
+.+.++|+|.| .+|+.+..+. +.+++|..|.+++.|+++| |++||+|+.+... .+-... .-..+..++.
T Consensus 4 ~~~~~~v~l~k~~~~~~~G~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~---~v~~~~-~~~~~~~~~~ 78 (91)
T 1m5z_A 4 PVELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHV---RTRDFD-CCLVVPLIAE 78 (91)
T ss_dssp CCEEEEEEEECCTTCSSSSEEEEECTTSSCEEEEEECTTSHHHHHT-CCTTCEEEEETTE---ECTTCC-HHHHHHHHHT
T ss_pred CcceEEEEEEECCCCCCccEEEEeccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECCCCC-HHHHHHHHHc
Confidence 45778899986 6899998764 4599999999999999999 9999999998753 221111 1234445555
Q ss_pred ccCceEEEEeec
Q 023871 157 RVGPLLMKMQKR 168 (276)
Q Consensus 157 r~gpv~L~l~R~ 168 (276)
...++.|.+.|.
T Consensus 79 ~g~~v~l~v~R~ 90 (91)
T 1m5z_A 79 SGNKLDLVISRN 90 (91)
T ss_dssp STTEEEEEEEEC
T ss_pred CCCEEEEEEEeC
Confidence 456789999885
No 46
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.47 E-value=2e-07 Score=73.54 Aligned_cols=55 Identities=13% Similarity=0.177 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+++.|+.+++.|+|++|+..|++||+++|++. .+|++++.||.++|++++|+..+
T Consensus 8 y~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~a~~~~ 62 (184)
T 3vtx_A 8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV---ETLLKLGKTYMDIGLPNDAIESL 62 (184)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHH
Confidence 45667777777777777777777777777764 46777777777777777776543
No 47
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.47 E-value=2.5e-07 Score=66.51 Aligned_cols=58 Identities=21% Similarity=0.344 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.+.++..|+.++..|+|++|+..|++||.++|++. .+|+|++.||.++|++++|+..+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~ 61 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNP---VGYSNKAMALIKLGEYTQAIQMC 61 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcCHHHHHHHH
Confidence 45678999999999999999999999999999985 68999999999999999999875
No 48
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.47 E-value=2.4e-07 Score=71.31 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
.++..|..+++.|+|++|+..|++||.++|++. .+|++++.||..+|++++|+.+++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~---~a~~~lg~~~~~~g~~~~A~~~~~ 75 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPERE---EAWRSLGLTQAENEKDGLAIIALN 75 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 367899999999999999999999999999986 689999999999999999998763
No 49
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=98.46 E-value=5.5e-07 Score=68.52 Aligned_cols=83 Identities=23% Similarity=0.415 Sum_probs=61.5
Q ss_pred cccceEEEEecC---cceeEEeeeCCC-CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc
Q 023871 82 EKYEEYEVEIEQ---PYGLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR 157 (276)
Q Consensus 82 ~~~~~y~V~l~K---PLGl~f~e~~dG-gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r 157 (276)
.+.+..+|+|.| ++|+.+..+.++ +++|..|.|++.|+++|.|++||+|+++... .+-. ...-.+...++..
T Consensus 8 ~~~~~~~v~l~k~~~glG~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~---~v~~-~~~~~~~~~~~~~ 83 (104)
T 3i4w_A 8 IPREPRRIVIHRGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGV---DLRN-ASHEQAAIALKNA 83 (104)
T ss_dssp CCSSCEEEEEECBTTBTSEEEEECC-CCCEEEEEECTTSHHHHHCCCCTTEEEEEETTE---ECTT-CCHHHHHHHHHTS
T ss_pred CCCccEEEEEEeCCCccCEEEECCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCE---ECCC-CCHHHHHHHHHcC
Confidence 444567777776 788999887666 9999999999999999999999999998642 3311 1223445566665
Q ss_pred cCceEEEEeec
Q 023871 158 VGPLLMKMQKR 168 (276)
Q Consensus 158 ~gpv~L~l~R~ 168 (276)
..++.|.+.|.
T Consensus 84 ~~~v~l~v~r~ 94 (104)
T 3i4w_A 84 GQTVTIIAQYK 94 (104)
T ss_dssp CSEEEEEEEEC
T ss_pred CCeEEEEEEEC
Confidence 67889999884
No 50
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=98.46 E-value=5.5e-07 Score=70.13 Aligned_cols=82 Identities=23% Similarity=0.432 Sum_probs=63.6
Q ss_pred ceEEEEecC----cceeEEeeeC----CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc
Q 023871 85 EEYEVEIEQ----PYGLKFAKGR----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ 156 (276)
Q Consensus 85 ~~y~V~l~K----PLGl~f~e~~----dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~ 156 (276)
+.++|+|.| +||+.+..+. +.++||..|.|+|.|+++|.|++||+|+.+-.. .+-. ..+..+...|+.
T Consensus 5 ~~~~v~l~k~~~~~lG~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~---~v~~-~~~~~~~~~l~~ 80 (108)
T 3cbz_A 5 NIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDM---NFEN-MSNDDAVRVLRD 80 (108)
T ss_dssp CEEEEEECHHHHCCCCEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTE---ETTS-CCHHHHHHHHHH
T ss_pred eEEEEEEEeCCCCccCEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCE---ECCC-CCHHHHHHHHHh
Confidence 678899885 6999998763 469999999999999999999999999998743 2211 125566777775
Q ss_pred c---cCceEEEEeecCC
Q 023871 157 R---VGPLLMKMQKRYG 170 (276)
Q Consensus 157 r---~gpv~L~l~R~~~ 170 (276)
. .++|.|++.|+.-
T Consensus 81 ~~~~~~~v~l~v~R~~~ 97 (108)
T 3cbz_A 81 IVHKPGPIVLTVAKSGG 97 (108)
T ss_dssp HHTSSSCEEEEEECCCC
T ss_pred cccCCCeEEEEEEeCCC
Confidence 3 6789999999643
No 51
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.46 E-value=3.5e-07 Score=70.90 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.+.++..|..+++.|+|++|+..|++++.++|++. .+|++++.||.++|++++|+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~ 75 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA---RYFLGLGACRQSLGLYEQALQSY 75 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH---HHHHHHHHHHHHHhhHHHHHHHH
Confidence 34567999999999999999999999999999986 58999999999999999999876
No 52
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.46 E-value=6.2e-07 Score=71.32 Aligned_cols=85 Identities=24% Similarity=0.422 Sum_probs=65.5
Q ss_pred cccceEEEEecC----cceeEEeee-------CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhH
Q 023871 82 EKYEEYEVEIEQ----PYGLKFAKG-------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRT 150 (276)
Q Consensus 82 ~~~~~y~V~l~K----PLGl~f~e~-------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~ 150 (276)
...+.++|+|.| +||+.+... .+++++|..|.+++.|+++|.|++||+|+++... .+-. ..+.++
T Consensus 12 ~~~~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~---~v~~-~~~~~~ 87 (129)
T 2dmz_A 12 SLFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGV---NIQG-FANHDV 87 (129)
T ss_dssp CCEEEEEEEECCCTTCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTB---CCTT-CCHHHH
T ss_pred CCCcEEEEEEEeCCCCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCE---ECCC-CCHHHH
Confidence 456889999955 789999874 3469999999999999999999999999998753 2211 114566
Q ss_pred HHHhhcccCceEEEEeecCC
Q 023871 151 MYTIRQRVGPLLMKMQKRYG 170 (276)
Q Consensus 151 ~~air~r~gpv~L~l~R~~~ 170 (276)
..+|+....++.|.+.|.-.
T Consensus 88 ~~~l~~~~~~v~l~v~R~~~ 107 (129)
T 2dmz_A 88 VEVLRNAGQVVHLTLVRRKT 107 (129)
T ss_dssp HHHHHHCCSSEEEEEEEESS
T ss_pred HHHHHcCCCeEEEEEEeCCc
Confidence 67777666788999998654
No 53
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.46 E-value=5.7e-07 Score=63.98 Aligned_cols=83 Identities=13% Similarity=0.027 Sum_probs=66.7
Q ss_pred HHhhcCCCcchhHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871 185 RAERNSGVISNRVREIQMQNYMKKKEQKE-RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS 263 (276)
Q Consensus 185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkk-qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya 263 (276)
..-...|++++++..++. ..++.. ...-++..|..++..|+|++|+..|++++.++|++. .+++|++.||.
T Consensus 12 ~~~~~~~~~~~A~~~~~~-----~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~a~~~~ 83 (118)
T 1elw_A 12 NKALSVGNIDDALQCYSE-----AIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG---KGYSRKAAALE 83 (118)
T ss_dssp HHHHHTTCHHHHHHHHHH-----HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHH-----HHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH---HHHHHHHHHHH
Confidence 444578888888666555 333322 134467889999999999999999999999999875 58999999999
Q ss_pred hcCChhHHHhhh
Q 023871 264 KLNQVPLLLALI 275 (276)
Q Consensus 264 KLgq~~eAI~aL 275 (276)
++|++++|++.+
T Consensus 84 ~~~~~~~A~~~~ 95 (118)
T 1elw_A 84 FLNRFEEAKRTY 95 (118)
T ss_dssp HTTCHHHHHHHH
T ss_pred HHhhHHHHHHHH
Confidence 999999999875
No 54
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=98.45 E-value=1.2e-06 Score=70.46 Aligned_cols=84 Identities=17% Similarity=0.290 Sum_probs=64.1
Q ss_pred cccceEEEEecC---cceeEEeeeCC-----CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHH
Q 023871 82 EKYEEYEVEIEQ---PYGLKFAKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYT 153 (276)
Q Consensus 82 ~~~~~y~V~l~K---PLGl~f~e~~d-----Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~a 153 (276)
.+.+.++|+|.| ++|+.+..+.+ .++||..|.+|+.|+++|.|++||+|+.|-.. .+-.. .+.++...
T Consensus 26 ~~~~~~~v~l~k~~~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~---~v~~~-~~~~~~~~ 101 (130)
T 1i16_A 26 AEATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGT---AMQGL-TRFEAWNI 101 (130)
T ss_dssp SSEEEEEEEEETTSSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSC---BGGGS-CHHHHHHH
T ss_pred CCCcEEEEEEEcCCCccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECCCC-CHHHHHHH
Confidence 345667888887 89999987655 48999999999999999669999999998753 22111 34567778
Q ss_pred hhccc-CceEEEEeecC
Q 023871 154 IRQRV-GPLLMKMQKRY 169 (276)
Q Consensus 154 ir~r~-gpv~L~l~R~~ 169 (276)
|+... .++.|++.|+-
T Consensus 102 l~~~~~~~v~l~v~r~~ 118 (130)
T 1i16_A 102 IKALPDGPVTIVIRRKS 118 (130)
T ss_dssp HHTSCSSEEEEEEEEES
T ss_pred HHhCCCceEEEEEEeCC
Confidence 88654 45999999873
No 55
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.45 E-value=4.1e-07 Score=63.37 Aligned_cols=56 Identities=23% Similarity=0.322 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.++..|..++..|+|++|+..|++|+.++|++. .+|+|++.||.++|++++|+..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~ 66 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA---EAWYNLGNAYYKQGDYDEAIEYY 66 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHhhHHHHHHHH
Confidence 345666777777777777777777777777664 46777777777777777776654
No 56
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.45 E-value=6.5e-07 Score=74.04 Aligned_cols=81 Identities=16% Similarity=0.049 Sum_probs=64.9
Q ss_pred hcCCCcchhHHHHHHHHHhhHHHHHHHH-HHHHH----------------HHHHHHHcCCHHHHHHHHHHHHcCCCChhh
Q 023871 188 RNSGVISNRVREIQMQNYMKKKEQKERR-EQDLR----------------EGLQLYRTGKYEVAREKFESVLGSKPTPEE 250 (276)
Q Consensus 188 r~~G~i~~al~Eiq~~nYkk~Kelkkqa-e~~~~----------------eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e 250 (276)
...|++++++..++. +-++...- +.++. .|..+++.|+|++|+..|++||+++|++.
T Consensus 15 ~~~g~~~~A~~~~~~-----al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~- 88 (208)
T 3urz_A 15 IEAGQNGQAVSYFRQ-----TIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNV- 88 (208)
T ss_dssp HHTTCHHHHHHHHHH-----HHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-
T ss_pred HHCCCHHHHHHHHHH-----HHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH-
Confidence 378899998766654 33333322 22344 89999999999999999999999999996
Q ss_pred HHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 251 SSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 251 ~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
.+|+|++.||..+|++++|+..++
T Consensus 89 --~~~~~lg~~~~~~g~~~~A~~~~~ 112 (208)
T 3urz_A 89 --DCLEACAEMQVCRGQEKDALRMYE 112 (208)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 689999999999999999998763
No 57
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.44 E-value=5.8e-07 Score=69.34 Aligned_cols=85 Identities=18% Similarity=0.356 Sum_probs=63.4
Q ss_pred cccceEEEEecC---cceeEEeee--------CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhH
Q 023871 82 EKYEEYEVEIEQ---PYGLKFAKG--------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRT 150 (276)
Q Consensus 82 ~~~~~y~V~l~K---PLGl~f~e~--------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~ 150 (276)
...+.+.|+|.| +||+.+... .+.++||..|.|++.|+++|.|++||+|+.+... .+=. ...-.+
T Consensus 6 ~~~~~~~v~l~k~~~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~---~v~~-~~~~~~ 81 (107)
T 1wf8_A 6 SGLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGI---SLVG-VTQNFA 81 (107)
T ss_dssp CCEEEEEEEEECBTTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTE---ECBS-CCHHHH
T ss_pred CCceEEEEEEEECCCcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCE---ECCC-CCHHHH
Confidence 356778888855 788998872 2458999999999999999999999999998742 2211 123345
Q ss_pred HHHhhcccCceEEEEeecCC
Q 023871 151 MYTIRQRVGPLLMKMQKRYG 170 (276)
Q Consensus 151 ~~air~r~gpv~L~l~R~~~ 170 (276)
...++....++.|++.|...
T Consensus 82 ~~~~~~~~~~v~l~v~R~~~ 101 (107)
T 1wf8_A 82 ATVLRNTKGNVRFVIGREKP 101 (107)
T ss_dssp HHHHHHCCSEEEEEEEEECC
T ss_pred HHHHhcCCCeEEEEEEeCCC
Confidence 56677656789999998644
No 58
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.44 E-value=3.3e-07 Score=67.80 Aligned_cols=58 Identities=22% Similarity=0.235 Sum_probs=53.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
++..|..+++.|+|++|+..|++++...|++.....++++++.||.++|++++|+..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 62 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQF 62 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 5688999999999999999999999999998766679999999999999999999876
No 59
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=98.44 E-value=3.7e-07 Score=68.71 Aligned_cols=76 Identities=20% Similarity=0.399 Sum_probs=58.7
Q ss_pred EEEecC----cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecc--cchhHHHHhhcccCce
Q 023871 88 EVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA--EYGRTMYTIRQRVGPL 161 (276)
Q Consensus 88 ~V~l~K----PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~--~~g~~~~air~r~gpv 161 (276)
.|+|.| ++|+.+..+.+|+++|..|.++|.|++++.+++||+|+++... +.. .+.++...|+...+++
T Consensus 4 ~V~l~K~~~~~lG~~i~~~~~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~------~v~~~~~~~~~~~l~~~~~~v 77 (88)
T 1kwa_A 4 LVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGI------SVANQTVEQLQKMLREMRGSI 77 (88)
T ss_dssp EEEEEECSSSCCCEEEECSCGGGEEEEEECTTSHHHHHTCCCTTCEEEEETTE------EGGGSCHHHHHHHHHHCCEEE
T ss_pred EEEEEeCCCCceeEEEEeCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE------ECCCCCHHHHHHHHhcCCCcE
Confidence 355544 5899998766789999999999999995559999999998642 233 4556777788766789
Q ss_pred EEEEeecC
Q 023871 162 LMKMQKRY 169 (276)
Q Consensus 162 ~L~l~R~~ 169 (276)
.|++.|+.
T Consensus 78 ~l~v~r~~ 85 (88)
T 1kwa_A 78 TFKIVPSY 85 (88)
T ss_dssp EEEEECCC
T ss_pred EEEEECCc
Confidence 99998854
No 60
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.44 E-value=4.1e-07 Score=74.38 Aligned_cols=82 Identities=11% Similarity=0.086 Sum_probs=67.6
Q ss_pred HhhcCCCcchhHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871 186 AERNSGVISNRVREIQMQNYMKKKEQK--ERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS 263 (276)
Q Consensus 186 ~~r~~G~i~~al~Eiq~~nYkk~Kelk--kqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya 263 (276)
.-...|++++++..+ .++.++. .....++..|..++..|+|++|+..|++|+.++|++. .+|+++|.||.
T Consensus 16 ~~~~~~~~~~A~~~~-----~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~ 87 (228)
T 4i17_A 16 DALNAKNYAVAFEKY-----SEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA---NAYIGKSAAYR 87 (228)
T ss_dssp HHHHTTCHHHHHHHH-----HHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH---HHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHH-----HHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH---HHHHHHHHHHH
Confidence 334788888885554 4455554 2345567899999999999999999999999999985 68999999999
Q ss_pred hcCChhHHHhhh
Q 023871 264 KLNQVPLLLALI 275 (276)
Q Consensus 264 KLgq~~eAI~aL 275 (276)
++|++++|+..+
T Consensus 88 ~~~~~~~A~~~~ 99 (228)
T 4i17_A 88 DMKNNQEYIATL 99 (228)
T ss_dssp HTTCHHHHHHHH
T ss_pred HcccHHHHHHHH
Confidence 999999999876
No 61
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=98.44 E-value=3.8e-07 Score=72.09 Aligned_cols=79 Identities=23% Similarity=0.359 Sum_probs=62.5
Q ss_pred ceEEEEecC---cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcc--eecccchhHHHHhhc--c
Q 023871 85 EEYEVEIEQ---PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEI--WPAAEYGRTMYTIRQ--R 157 (276)
Q Consensus 85 ~~y~V~l~K---PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdev--w~a~~~g~~~~air~--r 157 (276)
+..+|+|.| |||+.+..+.+|.+||..|.+||-|+++|.|.+||.|+.|-.. .| |+- .++...++. .
T Consensus 5 ~~k~V~l~K~~~~LG~tI~~~g~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~---~v~g~~h---~evv~lLk~~~~ 78 (95)
T 3gge_A 5 IEKEVNVYKSEDSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGE---NIVGWRH---YDVAKKLKELKK 78 (95)
T ss_dssp EEEEEEEECCSSCCCEEEECSSSSCCEEEEECTTSHHHHCTTCCTTCEEEEETTE---ECTTCCH---HHHHHHHHHSCT
T ss_pred eEEEEEEEECCCCceEEEEcCCCCcEEEEEEcCCChHHhcCCCCCCCEEEEECCE---EccCCCH---HHHHHHHHhCCC
Confidence 457788876 9999998767789999999999999999999999999998763 22 222 356666674 3
Q ss_pred cCceEEEEeecC
Q 023871 158 VGPLLMKMQKRY 169 (276)
Q Consensus 158 ~gpv~L~l~R~~ 169 (276)
..+++|+|-+|-
T Consensus 79 g~~~~L~lv~p~ 90 (95)
T 3gge_A 79 EELFTMKLIEPK 90 (95)
T ss_dssp TCEEEEEEEEEC
T ss_pred CCEEEEEEECcc
Confidence 457899998874
No 62
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.44 E-value=5.6e-07 Score=72.87 Aligned_cols=63 Identities=21% Similarity=0.262 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH-------------HHHHHHHhHHHHhcCChhHHHhhh
Q 023871 213 ERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES-------------SVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 213 kqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~-------------a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+..+.++..|+.+++.|+|++|+..|++||.+.|++.+. ..+|+|+|.||.++|++++|+..+
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 111 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA 111 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 344567799999999999999999999999998887521 378999999999999999999875
No 63
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.44 E-value=1e-06 Score=67.93 Aligned_cols=86 Identities=16% Similarity=0.388 Sum_probs=64.9
Q ss_pred ccceEEEEecC---cceeEEeeeC----------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchh
Q 023871 83 KYEEYEVEIEQ---PYGLKFAKGR----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGR 149 (276)
Q Consensus 83 ~~~~y~V~l~K---PLGl~f~e~~----------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~ 149 (276)
..+.++|+|.| ++|+.+..+. +.++||..|.+++.|+++|.|++||+|+.+-.. .+ ....+-.
T Consensus 6 ~~~~~~v~l~k~~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~---~v-~~~~~~~ 81 (107)
T 1uhp_A 6 SGKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGR---DL-SRATHDQ 81 (107)
T ss_dssp SSEEEEEEECCSSSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTE---EC-TTCCHHH
T ss_pred CcEEEEEEEEeCCCccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCE---EC-CCCCHHH
Confidence 45778999986 5999997643 459999999999999999449999999997642 22 1223445
Q ss_pred HHHHhhcccCceEEEEeecCCCc
Q 023871 150 TMYTIRQRVGPLLMKMQKRYGKM 172 (276)
Q Consensus 150 ~~~air~r~gpv~L~l~R~~~~~ 172 (276)
++..|+...+++.|.+.|+....
T Consensus 82 ~~~~~~~~~~~v~l~v~R~~~~~ 104 (107)
T 1uhp_A 82 AVEAFKTAKEPIVVQVLRRTSGP 104 (107)
T ss_dssp HHHHHHHCCSSEEEEEEECCSSC
T ss_pred HHHHHHcCCCcEEEEEEeCCCCC
Confidence 66777766678999998865443
No 64
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=98.44 E-value=9.9e-07 Score=67.17 Aligned_cols=84 Identities=25% Similarity=0.413 Sum_probs=63.2
Q ss_pred cceEEEEecC---cceeEEeeeC-------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHH
Q 023871 84 YEEYEVEIEQ---PYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYT 153 (276)
Q Consensus 84 ~~~y~V~l~K---PLGl~f~e~~-------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~a 153 (276)
.+.++|+|.| +||+.+..+. +.+++|..|.++|.|+++|.|++||+|+.+... .+-. ..+..++..
T Consensus 3 ~~~~~v~l~k~~~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~---~v~~-~~~~~~~~~ 78 (102)
T 2i1n_A 3 FKYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEV---DVSE-VVHSRAVEA 78 (102)
T ss_dssp EEEEEEEEECBTTBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTE---ECSS-CCHHHHHHH
T ss_pred ceEEEEEEEECCCcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCE---ECCC-CCHHHHHHH
Confidence 3557788875 6889998753 359999999999999999999999999998742 2211 124456667
Q ss_pred hhcccCceEEEEeecCCC
Q 023871 154 IRQRVGPLLMKMQKRYGK 171 (276)
Q Consensus 154 ir~r~gpv~L~l~R~~~~ 171 (276)
++....++.|.+.|....
T Consensus 79 ~~~~g~~v~l~v~R~~~~ 96 (102)
T 2i1n_A 79 LKEAGPVVRLVVRRRQPP 96 (102)
T ss_dssp HHHSCSEEEEEEEEECCC
T ss_pred HHcCCCeEEEEEEeCCCC
Confidence 776567889999986543
No 65
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=98.44 E-value=7.4e-07 Score=71.20 Aligned_cols=87 Identities=21% Similarity=0.358 Sum_probs=65.0
Q ss_pred ccccccceEEEEecC----cceeEEeeeC-----CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchh
Q 023871 79 EQEEKYEEYEVEIEQ----PYGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGR 149 (276)
Q Consensus 79 ~~~~~~~~y~V~l~K----PLGl~f~e~~-----dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~ 149 (276)
.+-.+.....|+|.| ++|+.+..+. +.++||..|.++|.|+++|.|++||+|+.+... .+- -....+
T Consensus 18 ~~~~~~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~---~v~-~~~~~~ 93 (118)
T 3b76_A 18 LYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGV---ELT-EVSRSE 93 (118)
T ss_dssp CCCEEEEEEEEEEECCTTCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTE---EGG-GSCHHH
T ss_pred cccCCCCcEEEEEEeCCCCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCE---ECC-CCCHHH
Confidence 344455666777754 5889988764 348999999999999999999999999998753 222 114446
Q ss_pred HHHHhhcccCceEEEEeecC
Q 023871 150 TMYTIRQRVGPLLMKMQKRY 169 (276)
Q Consensus 150 ~~~air~r~gpv~L~l~R~~ 169 (276)
+...|+...+.|.|++.|..
T Consensus 94 ~~~~l~~~~~~v~L~v~R~~ 113 (118)
T 3b76_A 94 AVALLKRTSSSIVLKALEVK 113 (118)
T ss_dssp HHHHHHSCCSEEEEEEEEEE
T ss_pred HHHHHHcCCCeEEEEEEECC
Confidence 77788877788999998853
No 66
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=98.44 E-value=9e-07 Score=67.37 Aligned_cols=79 Identities=20% Similarity=0.414 Sum_probs=59.9
Q ss_pred ceEEEEecC----cceeEEeeeCC-----------CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceeccc--c
Q 023871 85 EEYEVEIEQ----PYGLKFAKGRD-----------GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--Y 147 (276)
Q Consensus 85 ~~y~V~l~K----PLGl~f~e~~d-----------Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~--~ 147 (276)
..|.|+|.| .+|+.+....+ ++++|..|.|+|.|+++|.|++||+|+.+... +..+ +
T Consensus 4 dp~~v~l~~~~~~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~------~v~~~~~ 77 (103)
T 2fcf_A 4 QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGM------DLRDASH 77 (103)
T ss_dssp SCEEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTE------ECTTCCH
T ss_pred CCEEEEEEeCCCCceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCE------ECCCCCH
Confidence 347788875 47888865422 58999999999999999999999999998743 2333 5
Q ss_pred hhHHHHhhcccCceEEEEeecC
Q 023871 148 GRTMYTIRQRVGPLLMKMQKRY 169 (276)
Q Consensus 148 g~~~~air~r~gpv~L~l~R~~ 169 (276)
..+...|+...+++.|.+.|.-
T Consensus 78 ~~~~~~l~~~~~~v~l~v~r~~ 99 (103)
T 2fcf_A 78 EQAVEAIRKAGNPVVFMVQSII 99 (103)
T ss_dssp HHHHHHHHTCCSSEEEEEECCC
T ss_pred HHHHHHHHhCCCcEEEEEEECC
Confidence 5677788876779999998854
No 67
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.43 E-value=1e-06 Score=67.72 Aligned_cols=84 Identities=23% Similarity=0.440 Sum_probs=64.2
Q ss_pred ccceEEEEecCc----ceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc
Q 023871 83 KYEEYEVEIEQP----YGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ 156 (276)
Q Consensus 83 ~~~~y~V~l~KP----LGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~ 156 (276)
+....+|+|.|+ +|+.+..+.+ .+++|..|.+++.|+++| |++||+|+++... .+-. ..+..+...|+.
T Consensus 13 ~~~~~~v~l~k~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~---~v~~-~~~~~~~~~l~~ 87 (104)
T 1wi2_A 13 QFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDV---DFQD-IEHSKAVEILKT 87 (104)
T ss_dssp SSCCEEEEECCCTTCCCSEEEECCSSSCCCCEEEEECTTSHHHHHT-CCTTCEEEEETTE---ECSS-CCHHHHHHHHHH
T ss_pred CCCCEEEEEEeCCCCCccEEEEcccCCCCCEEEEEeCCCChHHHcC-CCCCCEEEEECCE---ECCC-CCHHHHHHHHhC
Confidence 345578888764 7899987644 489999999999999999 9999999998753 2211 125667777777
Q ss_pred ccCceEEEEeecCCCc
Q 023871 157 RVGPLLMKMQKRYGKM 172 (276)
Q Consensus 157 r~gpv~L~l~R~~~~~ 172 (276)
..++.|.+.|...+.
T Consensus 88 -~~~v~l~v~r~~~~~ 102 (104)
T 1wi2_A 88 -AREISMRVRFFSGPS 102 (104)
T ss_dssp -SSSEEEEEECCCCSC
T ss_pred -CCEEEEEEEECCCCC
Confidence 688999999976643
No 68
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.42 E-value=6.4e-07 Score=84.09 Aligned_cols=84 Identities=14% Similarity=0.066 Sum_probs=66.6
Q ss_pred cCCCcchhHHHHHH-----HHH-----hhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHH
Q 023871 189 NSGVISNRVREIQM-----QNY-----MKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYN 257 (276)
Q Consensus 189 ~~G~i~~al~Eiq~-----~nY-----kk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN 257 (276)
..|++++|+..++. +.+ ....++... ..-+++.|..++++|+|++|+..|++||+++|++. .+|||
T Consensus 280 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~ 356 (457)
T 1kt0_A 280 KGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE---KGLYR 356 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---HHHHH
T ss_pred hCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH---HHHHH
Confidence 78888888776665 111 111222222 34567999999999999999999999999999985 68999
Q ss_pred HhHHHHhcCChhHHHhhh
Q 023871 258 VACCYSKLNQVPLLLALI 275 (276)
Q Consensus 258 ~AcCyaKLgq~~eAI~aL 275 (276)
+|.||.++|++++|+..+
T Consensus 357 ~g~a~~~~g~~~~A~~~~ 374 (457)
T 1kt0_A 357 RGEAQLLMNEFESAKGDF 374 (457)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHH
Confidence 999999999999999876
No 69
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=98.41 E-value=9.1e-07 Score=68.03 Aligned_cols=85 Identities=21% Similarity=0.427 Sum_probs=63.0
Q ss_pred ccccceEEEEe--cC---cceeEEeee-------CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccch
Q 023871 81 EEKYEEYEVEI--EQ---PYGLKFAKG-------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYG 148 (276)
Q Consensus 81 ~~~~~~y~V~l--~K---PLGl~f~e~-------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g 148 (276)
+...+.++|+| .+ +||+.+... .+.+++|..|.+++.|+++|.|++||+|+++... .+-.. .+.
T Consensus 8 ~~~~~~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~---~v~~~-~~~ 83 (108)
T 2jre_A 8 ASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDV---NVQGM-AQS 83 (108)
T ss_dssp SSSCEEEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTE---ECTTS-CHH
T ss_pred ccCcEEEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCE---ECCCC-CHH
Confidence 34568899999 44 488999764 3459999999999999999999999999998753 22111 244
Q ss_pred hHHHHhhcccCceEEEEeecC
Q 023871 149 RTMYTIRQRVGPLLMKMQKRY 169 (276)
Q Consensus 149 ~~~~air~r~gpv~L~l~R~~ 169 (276)
.+...++....++.|.+.|..
T Consensus 84 ~~~~~l~~~g~~v~l~v~R~~ 104 (108)
T 2jre_A 84 DVVEVLRNAGNPVRLLLIRRL 104 (108)
T ss_dssp HHHHHHHHHCSEEEEEEEECC
T ss_pred HHHHHHHcCCCeEEEEEEeCC
Confidence 556666664567899998853
No 70
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.40 E-value=4.4e-07 Score=91.81 Aligned_cols=70 Identities=14% Similarity=0.101 Sum_probs=43.7
Q ss_pred HHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 203 QNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 203 ~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
..|+++-++... .+.+++.|+.+.++|+|++|+..|++||+++|++. .+|+|++.||.++|++++|++++
T Consensus 64 ~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~---~a~~~Lg~~~~~~g~~~eAi~~~ 134 (723)
T 4gyw_A 64 MHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFA---DAHSNLASIHKDSGNIPEAIASY 134 (723)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHH
Confidence 345555555444 23445666666666777777777777776666664 46667777777777777666654
No 71
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=98.40 E-value=1.4e-06 Score=65.57 Aligned_cols=79 Identities=28% Similarity=0.519 Sum_probs=61.1
Q ss_pred ceEEEEec---CcceeEEeeeC-----CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecc--cchhHHHHh
Q 023871 85 EEYEVEIE---QPYGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA--EYGRTMYTI 154 (276)
Q Consensus 85 ~~y~V~l~---KPLGl~f~e~~-----dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~--~~g~~~~ai 154 (276)
+.|+|+|. .+||+.+..+. +++++|..|.+++.|+++|.|++||+|+.+... +.. .+..+...+
T Consensus 5 ~~~~v~l~k~~~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~------~v~~~~~~~~~~~l 78 (96)
T 1d5g_A 5 DIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGV------SLEGATHKQAVETL 78 (96)
T ss_dssp CEEEEEEECSSSSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTE------ECTTCCHHHHHHHH
T ss_pred CEEEEEEEeCCCCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCE------ECCCCCHHHHHHHH
Confidence 56788886 57899998653 359999999999999999999999999998742 222 344566677
Q ss_pred hcccCceEEEEeecC
Q 023871 155 RQRVGPLLMKMQKRY 169 (276)
Q Consensus 155 r~r~gpv~L~l~R~~ 169 (276)
+....++.|.+.|..
T Consensus 79 ~~~g~~v~l~v~R~~ 93 (96)
T 1d5g_A 79 RNTGQVVHLLLEKGQ 93 (96)
T ss_dssp HSCCSEEEEEEECCS
T ss_pred HcCCCeEEEEEEcCC
Confidence 765567899998854
No 72
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=98.40 E-value=1e-06 Score=68.82 Aligned_cols=86 Identities=20% Similarity=0.377 Sum_probs=61.0
Q ss_pred ccccccceEEEEecC---cceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHH
Q 023871 79 EQEEKYEEYEVEIEQ---PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYT 153 (276)
Q Consensus 79 ~~~~~~~~y~V~l~K---PLGl~f~e~~--dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~a 153 (276)
.+-.+.+.++|+|.| ++|+.+..+. +.+++|..|.+++.|+++|.|++||+|+.+... .+=. ..+..++..
T Consensus 18 ~~~~~~~~~~v~l~~~~~glG~~l~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~---~v~~-~~~~~~~~~ 93 (112)
T 2r4h_A 18 LYFQSMDFYTVELERGAKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGE---TTKN-MKHSRAIEL 93 (112)
T ss_dssp -----CCEEEEEEECBTTBTSEEEEECGGGTCCEEEEEECTTSHHHHTTCCCTTCEEEEETTE---ECTT-CCHHHHHHH
T ss_pred cccCCCceEEEEEEcCCCccCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCE---ECCC-CCHHHHHHH
Confidence 344455678888876 5889887654 459999999999999999999999999998742 2211 123455666
Q ss_pred hhcccCceEEEEeec
Q 023871 154 IRQRVGPLLMKMQKR 168 (276)
Q Consensus 154 ir~r~gpv~L~l~R~ 168 (276)
++....++.|.+.|.
T Consensus 94 l~~~g~~v~l~v~R~ 108 (112)
T 2r4h_A 94 IKNGGRRVRLFLKRG 108 (112)
T ss_dssp HHTTTTEEEEEEECC
T ss_pred HHcCCCeEEEEEEeC
Confidence 665456789999884
No 73
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=98.39 E-value=1.3e-06 Score=65.13 Aligned_cols=78 Identities=15% Similarity=0.376 Sum_probs=60.1
Q ss_pred EEEEecC---cceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccc--hhHHHHhhcccCc
Q 023871 87 YEVEIEQ---PYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY--GRTMYTIRQRVGP 160 (276)
Q Consensus 87 y~V~l~K---PLGl~f~e~~d-Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~--g~~~~air~r~gp 160 (276)
..|+|.| ++|+.+..+.+ .+++|..|.+++.|+++| |++||+|+.+... +..++ ..+...|+....+
T Consensus 6 r~v~l~k~~~g~G~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~------~v~~~~~~~~~~~l~~~~~~ 78 (90)
T 2he4_A 6 RLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQ------NVEGLRHAEVVASIKAREDE 78 (90)
T ss_dssp EEEEEECBTTBCCEEEEECSSSSSEEEEEECTTSHHHHHT-CCTTCEEEEETTE------ECTTSCHHHHHHHHTTSSSE
T ss_pred EEEEEEECCCCccEEEEccCCCCCEEEEEECCCChHHHCC-CCCCCEEEEECCE------ECCCCCHHHHHHHHHcCCCc
Confidence 4566665 48888887654 489999999999999999 9999999998653 23333 5667777766678
Q ss_pred eEEEEeecCCC
Q 023871 161 LLMKMQKRYGK 171 (276)
Q Consensus 161 v~L~l~R~~~~ 171 (276)
+.|.+.|+-.+
T Consensus 79 v~l~v~r~~~~ 89 (90)
T 2he4_A 79 ARLLVVGPSTR 89 (90)
T ss_dssp EEEEEECCCCC
T ss_pred EEEEEEccCCC
Confidence 99999996543
No 74
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.39 E-value=5.6e-07 Score=65.81 Aligned_cols=84 Identities=7% Similarity=0.038 Sum_probs=67.4
Q ss_pred HHhhcCCCcchhHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871 185 RAERNSGVISNRVREIQMQNYMKKKEQKE-RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS 263 (276)
Q Consensus 185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkk-qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya 263 (276)
..-...|++++++..++. ..++.. ...-++..|..++..|+|++|+..|++++.++|++. .+++|+|.||.
T Consensus 24 ~~~~~~~~~~~A~~~~~~-----al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~ 95 (133)
T 2lni_A 24 NECFQKGDYPQAMKHYTE-----AIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI---KGYTRKAAALE 95 (133)
T ss_dssp HHHHHTTCSHHHHHHHHH-----HHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHH-----HHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch---HHHHHHHHHHH
Confidence 444578999999776665 222221 134467889999999999999999999999999975 58999999999
Q ss_pred hcCChhHHHhhhC
Q 023871 264 KLNQVPLLLALIE 276 (276)
Q Consensus 264 KLgq~~eAI~aLE 276 (276)
++|++++|+..++
T Consensus 96 ~~~~~~~A~~~~~ 108 (133)
T 2lni_A 96 AMKDYTKAMDVYQ 108 (133)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HHhhHHHHHHHHH
Confidence 9999999998763
No 75
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.39 E-value=3.7e-07 Score=82.00 Aligned_cols=85 Identities=11% Similarity=0.049 Sum_probs=67.4
Q ss_pred cCCCcchhHHHHHH-----HHH-----hhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHH
Q 023871 189 NSGVISNRVREIQM-----QNY-----MKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYN 257 (276)
Q Consensus 189 ~~G~i~~al~Eiq~-----~nY-----kk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN 257 (276)
..|++++|+..++. +.. ....++... ..-+++.|..+++.|+|++|+..|++||+++|++. .+|||
T Consensus 159 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~ 235 (336)
T 1p5q_A 159 KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE---KGLSR 235 (336)
T ss_dssp HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHH
T ss_pred HCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHH
Confidence 67888888776666 111 122223333 34568999999999999999999999999999985 68999
Q ss_pred HhHHHHhcCChhHHHhhhC
Q 023871 258 VACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 258 ~AcCyaKLgq~~eAI~aLE 276 (276)
+|.||.++|++++|+..++
T Consensus 236 lg~~~~~~g~~~~A~~~~~ 254 (336)
T 1p5q_A 236 RGEAHLAVNDFELARADFQ 254 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 9999999999999998763
No 76
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.39 E-value=1.1e-06 Score=66.79 Aligned_cols=81 Identities=14% Similarity=-0.028 Sum_probs=63.0
Q ss_pred hhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhc
Q 023871 187 ERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL 265 (276)
Q Consensus 187 ~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKL 265 (276)
-...|++++++..++. +.++... .+-++..|..++..|+|++|+..|++++.++|++. .+|+|+|.||.++
T Consensus 23 ~~~~~~~~~A~~~~~~-----al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~a~~~~~~ 94 (166)
T 1a17_A 23 YFKAKDYENAIKFYSQ-----AIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI---KGYYRRAASNMAL 94 (166)
T ss_dssp HHHTTCHHHHHHHHHH-----HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHT
T ss_pred HHHccCHHHHHHHHHH-----HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHh
Confidence 3477888888655544 3333322 34467888889999999999999999999999875 5899999999999
Q ss_pred CChhHHHhhh
Q 023871 266 NQVPLLLALI 275 (276)
Q Consensus 266 gq~~eAI~aL 275 (276)
|++++|+..+
T Consensus 95 ~~~~~A~~~~ 104 (166)
T 1a17_A 95 GKFRAALRDY 104 (166)
T ss_dssp TCHHHHHHHH
T ss_pred ccHHHHHHHH
Confidence 9999998765
No 77
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.39 E-value=3.3e-06 Score=68.32 Aligned_cols=82 Identities=13% Similarity=0.050 Sum_probs=64.5
Q ss_pred cCCCcchhHHHHHHHHH--------------hhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHH
Q 023871 189 NSGVISNRVREIQMQNY--------------MKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVA 254 (276)
Q Consensus 189 ~~G~i~~al~Eiq~~nY--------------kk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A 254 (276)
..|++++++..++..-- ...+.+ ...-+++.|..+++.|+|++|+..|++||.++|++. .+
T Consensus 50 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~ 124 (198)
T 2fbn_A 50 KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNI--EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNV---KA 124 (198)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---HH
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccH---HH
Confidence 67888888776665110 000111 124467899999999999999999999999999885 68
Q ss_pred HHHHhHHHHhcCChhHHHhhh
Q 023871 255 SYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 255 ~YN~AcCyaKLgq~~eAI~aL 275 (276)
++++|.||..+|++++|+..+
T Consensus 125 ~~~lg~~~~~~~~~~~A~~~~ 145 (198)
T 2fbn_A 125 LYKLGVANMYFGFLEEAKENL 145 (198)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHH
Confidence 999999999999999999876
No 78
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.38 E-value=6.6e-07 Score=80.60 Aligned_cols=85 Identities=13% Similarity=0.103 Sum_probs=66.2
Q ss_pred cCCCcchhHHHHHHH-----HH---h---hHHHHHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHH
Q 023871 189 NSGVISNRVREIQMQ-----NY---M---KKKEQKER--REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVAS 255 (276)
Q Consensus 189 ~~G~i~~al~Eiq~~-----nY---k---k~Kelkkq--ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~ 255 (276)
..|++++|+..++.. .+ . +..+.... ..-+++.|..++++|+|++|+..|++||.++|++. .+|
T Consensus 191 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~ 267 (338)
T 2if4_A 191 KEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNP---KAL 267 (338)
T ss_dssp SSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCH---HHH
T ss_pred hcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHH
Confidence 789999998877761 10 0 00111111 12467999999999999999999999999999985 689
Q ss_pred HHHhHHHHhcCChhHHHhhhC
Q 023871 256 YNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 256 YN~AcCyaKLgq~~eAI~aLE 276 (276)
||+|.||..+|++++|+..|+
T Consensus 268 ~~lg~a~~~~g~~~~A~~~l~ 288 (338)
T 2if4_A 268 FRRGKAKAELGQMDSARDDFR 288 (338)
T ss_dssp HHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999998763
No 79
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.37 E-value=6.3e-07 Score=66.45 Aligned_cols=58 Identities=14% Similarity=0.024 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
.-++..|..++..|+|++|+..|++||.++|++. .+|+|++.||.++|++++|+..++
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS---VAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcH---HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4567899999999999999999999999999985 589999999999999999998763
No 80
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.37 E-value=1.3e-06 Score=69.43 Aligned_cols=84 Identities=14% Similarity=0.259 Sum_probs=63.5
Q ss_pred cccceEEEEecCc---ceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc
Q 023871 82 EKYEEYEVEIEQP---YGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ 156 (276)
Q Consensus 82 ~~~~~y~V~l~KP---LGl~f~e~~--dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~ 156 (276)
...+.++|+|.|. +|+.+..+. +++++|..|.+++.|+++|.|++||+|+.+... .+- .....+++..|+.
T Consensus 16 ~~~~~~~v~l~~~~~glG~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~---~v~-~~~~~~~~~~l~~ 91 (123)
T 1ueq_A 16 LKGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEV---CVL-GHTHADVVKLFQS 91 (123)
T ss_dssp CCSEEEEEEEECCTTSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTE---ECT-TSCHHHHHHHHHT
T ss_pred CCCcEEEEEEEeCCCceeEEEecccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCE---ECC-CCCHHHHHHHHHh
Confidence 3446788998874 889888654 458999999999999999999999999998642 111 1134567777776
Q ss_pred c--cCceEEEEeecC
Q 023871 157 R--VGPLLMKMQKRY 169 (276)
Q Consensus 157 r--~gpv~L~l~R~~ 169 (276)
. ..++.|++.|..
T Consensus 92 ~~~g~~v~l~v~R~~ 106 (123)
T 1ueq_A 92 VPIGQSVNLVLCRGY 106 (123)
T ss_dssp SCTTCEEEEEEEESC
T ss_pred CCCCCeEEEEEEeCC
Confidence 3 467999999965
No 81
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.37 E-value=1.1e-06 Score=70.43 Aligned_cols=86 Identities=14% Similarity=0.177 Sum_probs=65.9
Q ss_pred HHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh-------------h
Q 023871 185 RAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE-------------E 250 (276)
Q Consensus 185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~-------------e 250 (276)
..-...|++++++..++ ++.++... ...++..|..++..|+|++|+..|++|+++.|++. .
T Consensus 45 ~~~~~~g~~~~A~~~~~-----~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 119 (213)
T 1hh8_A 45 CMYTILKNMTEAEKAFT-----RSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLF 119 (213)
T ss_dssp HHHHHTTCHHHHHHHHH-----HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEE
T ss_pred HHHHHcCCHHHHHHHHH-----HHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCcc
Confidence 44457788888855544 44443332 34567899999999999999999999999888754 2
Q ss_pred HHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 251 SSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 251 ~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
...+|+|++.||.++|++++|+..+
T Consensus 120 ~~~~~~~l~~~~~~~g~~~~A~~~~ 144 (213)
T 1hh8_A 120 ACEVLYNIAFMYAKKEEWKKAEEQL 144 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHccCHHHHHHHH
Confidence 3578999999999999999999876
No 82
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.37 E-value=3.1e-06 Score=66.19 Aligned_cols=84 Identities=24% Similarity=0.370 Sum_probs=63.0
Q ss_pred ceEEEEecC----cceeEEeeeCC-----------CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchh
Q 023871 85 EEYEVEIEQ----PYGLKFAKGRD-----------GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGR 149 (276)
Q Consensus 85 ~~y~V~l~K----PLGl~f~e~~d-----------Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~ 149 (276)
..++|+|.| +||+.+..+.+ .++||..|.+++.|+++|.|++||+|+.+... .+-.. .+-.
T Consensus 15 ~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~---~v~~~-~~~~ 90 (117)
T 2ehr_A 15 PPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGV---DLQNA-SHSE 90 (117)
T ss_dssp CCEEEEECCCSSSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSC---BCTTC-CHHH
T ss_pred CCEEEEEEeCCCCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCE---ECCCC-CHHH
Confidence 447788865 47888866542 49999999999999999999999999998742 33221 2446
Q ss_pred HHHHhhcccCceEEEEeecCCCc
Q 023871 150 TMYTIRQRVGPLLMKMQKRYGKM 172 (276)
Q Consensus 150 ~~~air~r~gpv~L~l~R~~~~~ 172 (276)
++..|+....++.|.+.|.....
T Consensus 91 ~~~~~~~~g~~v~l~v~r~~~~~ 113 (117)
T 2ehr_A 91 AVEAIKNAGNPVVFIVQSLSSTP 113 (117)
T ss_dssp HHHHHHTSCSSEEEEECCBSCCC
T ss_pred HHHHHHcCCCeEEEEEEECCCCC
Confidence 67777776678999999876543
No 83
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.36 E-value=6.8e-07 Score=63.58 Aligned_cols=59 Identities=14% Similarity=0.115 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 214 qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+.+.++..|..++..|+|++|+..|++++..+|++. .+++++|.||..+|++++|+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~a~~~~~~~~~~~A~~~~ 61 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH---VLYSNRSAAYAKKGDYQKAYEDG 61 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH---HHHHHHHHHHHhhccHHHHHHHH
Confidence 345678999999999999999999999999999885 58999999999999999999875
No 84
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.36 E-value=2.4e-06 Score=66.07 Aligned_cols=82 Identities=23% Similarity=0.394 Sum_probs=61.0
Q ss_pred ceEEEEecC---cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCce
Q 023871 85 EEYEVEIEQ---PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL 161 (276)
Q Consensus 85 ~~y~V~l~K---PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv 161 (276)
+..+|+|.| ++|+.+..+.+.+++|..|.+++.|+++|.|++||+|+.+... .+= ......+...|+.....+
T Consensus 15 ~~~~v~l~~~~~~lG~~l~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~---~v~-~~~~~~~~~~l~~~g~~v 90 (111)
T 2dlu_A 15 HVEEVELINDGSGLGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGT---NVQ-GMTSEQVAQVLRNCGNSV 90 (111)
T ss_dssp EEEEEEEECCSSCCCEEEECCSSSSBEEEEECTTSSHHHHTCCCSSCEEEEESSC---CCT-TSCHHHHHHHHHHHCSEE
T ss_pred ceEEEEEEeCCCccCEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECC-CCCHHHHHHHHHhCCCeE
Confidence 446677764 6899998777789999999999999999999999999998742 221 112344556666545678
Q ss_pred EEEEeecCC
Q 023871 162 LMKMQKRYG 170 (276)
Q Consensus 162 ~L~l~R~~~ 170 (276)
.|.+.|...
T Consensus 91 ~l~v~R~~~ 99 (111)
T 2dlu_A 91 RMLVARDPA 99 (111)
T ss_dssp EEEEEESCT
T ss_pred EEEEEeCCC
Confidence 999988544
No 85
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.36 E-value=8.2e-07 Score=64.91 Aligned_cols=57 Identities=23% Similarity=0.347 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
..++..|..++..|+|++|+..|++++..+|++. .+++++|.||..+|++++|+..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~ 73 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA---KLYSNRAACYTKLLEFQLALKDC 73 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH---HHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHhccHHHHHHHH
Confidence 4577899999999999999999999999999885 68999999999999999999876
No 86
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=98.36 E-value=1.5e-06 Score=66.84 Aligned_cols=81 Identities=26% Similarity=0.445 Sum_probs=60.3
Q ss_pred eEEEEecC---cceeEEeeeC-------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhh
Q 023871 86 EYEVEIEQ---PYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR 155 (276)
Q Consensus 86 ~y~V~l~K---PLGl~f~e~~-------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air 155 (276)
.++|+|.| ++|+.+..+. +.+++|..|.++|.|+++|.|++||+|+.+... .+-. ..+-.++..++
T Consensus 4 ~~~v~l~k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~---~v~~-~~~~~~~~~~~ 79 (105)
T 2awx_A 4 IMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSV---SLEE-VTHEEAVTALK 79 (105)
T ss_dssp EEEEEEECBTTBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTE---ECTT-CBHHHHHHHHH
T ss_pred EEEEEEEECCCCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCE---ECCC-CCHHHHHHHHH
Confidence 46677754 7889998653 249999999999999999999999999998642 2211 13445666777
Q ss_pred cccCceEEEEeecCC
Q 023871 156 QRVGPLLMKMQKRYG 170 (276)
Q Consensus 156 ~r~gpv~L~l~R~~~ 170 (276)
....++.|.+.|...
T Consensus 80 ~~~~~v~l~v~R~~~ 94 (105)
T 2awx_A 80 NTSDFVYLKVAKPTS 94 (105)
T ss_dssp SCCSEEEEEEECCCC
T ss_pred cCCCeEEEEEEcCCC
Confidence 656788999998654
No 87
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.35 E-value=1.6e-06 Score=66.18 Aligned_cols=82 Identities=21% Similarity=0.318 Sum_probs=62.3
Q ss_pred ceEEEEecCc---ceeEEeeeC-CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCc
Q 023871 85 EEYEVEIEQP---YGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP 160 (276)
Q Consensus 85 ~~y~V~l~KP---LGl~f~e~~-dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gp 160 (276)
....|+|.|. +|+.+.... .++++|..|.+++.|+++| |++||+|+.+... .+-.. .+..++..|+....+
T Consensus 6 ~~r~v~l~k~~~g~G~~l~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~---~v~~~-~~~~~~~~l~~~g~~ 80 (102)
T 2d90_A 6 SGRVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGK---SVEAL-DHDGVVEMIRKGGDQ 80 (102)
T ss_dssp SSEEEEEECCSSSSSCEEEECSSSSSEEEECCCTTSTTTTTT-CCTTCEEEEESSC---BCTTS-CHHHHHHHHHHSTTE
T ss_pred CCEEEEEeeCCCCccEEEEeecCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECCCC-CHHHHHHHHHcCCCE
Confidence 3467777775 889998754 3599999999999999999 9999999998753 22221 144566677765678
Q ss_pred eEEEEeecCCC
Q 023871 161 LLMKMQKRYGK 171 (276)
Q Consensus 161 v~L~l~R~~~~ 171 (276)
+.|.+.|+-+.
T Consensus 81 v~l~v~r~~~~ 91 (102)
T 2d90_A 81 TTLLVLDKEAE 91 (102)
T ss_dssp EEEEECSTTCC
T ss_pred EEEEEEECCCc
Confidence 99999987665
No 88
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.35 E-value=1.9e-06 Score=79.35 Aligned_cols=80 Identities=15% Similarity=0.082 Sum_probs=65.3
Q ss_pred cCCCcchhHHHHHHHHHhhHHH----------------HHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH
Q 023871 189 NSGVISNRVREIQMQNYMKKKE----------------QKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES 251 (276)
Q Consensus 189 ~~G~i~~al~Eiq~~nYkk~Ke----------------lkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~ 251 (276)
..|++++|+..++. +.+ +... ..-+.+.|..++++|+|++|+..|++||+++|++.
T Consensus 235 ~~g~~~~Ai~~y~k-----Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~-- 307 (370)
T 1ihg_A 235 KSQNWEMAIKKYTK-----VLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNT-- 307 (370)
T ss_dssp HTTCHHHHHHHHHH-----HHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH--
T ss_pred HhcCHHHHHHHHHH-----HHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhH--
Confidence 67778887665554 333 2222 34467999999999999999999999999999985
Q ss_pred HHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 252 SVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 252 a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
.+||++|.||.++|++++|+..|+
T Consensus 308 -~a~~~lg~~~~~~g~~~eA~~~l~ 331 (370)
T 1ihg_A 308 -KALYRRAQGWQGLKEYDQALADLK 331 (370)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHccCHHHHHHHHH
Confidence 689999999999999999998763
No 89
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=98.35 E-value=1.1e-06 Score=65.49 Aligned_cols=80 Identities=19% Similarity=0.326 Sum_probs=60.0
Q ss_pred ceEEEEecC----cceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhccc
Q 023871 85 EEYEVEIEQ----PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV 158 (276)
Q Consensus 85 ~~y~V~l~K----PLGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~ 158 (276)
..++|+|.| ++|+.+..+.+ .+++|..|.+++.|+++|.+++||+|+.+... .+= ...+.++...++...
T Consensus 4 ~~~~v~l~k~~~~~lG~~i~~~~~~~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~---~v~-~~~~~~~~~~~~~~~ 79 (90)
T 1qav_A 4 QRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGE---DLS-SATHDEAVQALKKTG 79 (90)
T ss_dssp SCEEEEEECCTTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTE---ECT-TCCHHHHHHHHHTCC
T ss_pred ccEEEEEEeCCCCCcCEEEEcccCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCE---ECC-CCCHHHHHHHHHhCC
Confidence 457888877 68999987633 48999999999999999559999999998743 221 113445667777656
Q ss_pred CceEEEEeec
Q 023871 159 GPLLMKMQKR 168 (276)
Q Consensus 159 gpv~L~l~R~ 168 (276)
.++.|.+.|.
T Consensus 80 ~~v~l~v~r~ 89 (90)
T 1qav_A 80 KEVVLEVKYM 89 (90)
T ss_dssp SEEEEEEEEC
T ss_pred CeEEEEEEEe
Confidence 7789988873
No 90
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=98.35 E-value=1.3e-06 Score=64.69 Aligned_cols=75 Identities=24% Similarity=0.466 Sum_probs=57.7
Q ss_pred EEEEecC--cceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceeccc--chhHHHHhhcccCc
Q 023871 87 YEVEIEQ--PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIRQRVGP 160 (276)
Q Consensus 87 y~V~l~K--PLGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~--~g~~~~air~r~gp 160 (276)
++|+++. ++|+.+..+.+ .+++|..|.|++.|+++| +++||+|+.+... +..+ +..+...|+....+
T Consensus 4 ~~v~~~~~~~lG~~l~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~------~v~~~~~~~~~~~l~~~~~~ 76 (87)
T 2pa1_A 4 LTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDAD-LRPGDIIVAINGE------SAEGMLHAEAQSKIRQSPSP 76 (87)
T ss_dssp EEEEECSSSCCSEEEEEEGGGTEEEEEEEECSSSHHHHTT-CCTTCEEEEETTE------ESTTCCHHHHHHHHHTCCSS
T ss_pred EEEEECCCCccCEEEecccCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCE------ECCCCCHHHHHHHHHcCCCe
Confidence 4455544 78899887654 489999999999999999 9999999998653 2233 55667777765589
Q ss_pred eEEEEeec
Q 023871 161 LLMKMQKR 168 (276)
Q Consensus 161 v~L~l~R~ 168 (276)
+.|.+.|.
T Consensus 77 v~l~v~R~ 84 (87)
T 2pa1_A 77 LRLQLDRI 84 (87)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEec
Confidence 99999984
No 91
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.34 E-value=8.8e-07 Score=69.91 Aligned_cols=81 Identities=16% Similarity=0.232 Sum_probs=61.9
Q ss_pred eEEEEecC----cceeEEeeeCC---CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhccc
Q 023871 86 EYEVEIEQ----PYGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV 158 (276)
Q Consensus 86 ~y~V~l~K----PLGl~f~e~~d---Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~ 158 (276)
.++|+|.| +||+.+..+.+ +++||..|.+++.|+++|.|++||+|+.+... .+ .-..+..+...|+...
T Consensus 16 ~~~v~l~k~~~~~lG~~i~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~---~v-~~~~~~~~~~~l~~~g 91 (117)
T 1v62_A 16 PLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGT---SM-EHCSLLEATKLLASIS 91 (117)
T ss_dssp SEEEEEECCTTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTE---ET-TSCCHHHHHHHHHSCS
T ss_pred cEEEEEEcCCCCcccEEEEccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---EC-CCCCHHHHHHHHHhCC
Confidence 46777776 68899887643 46999999999999999999999999998743 23 0123456677777656
Q ss_pred CceEEEEeecCC
Q 023871 159 GPLLMKMQKRYG 170 (276)
Q Consensus 159 gpv~L~l~R~~~ 170 (276)
..+.|++.|..-
T Consensus 92 ~~v~l~v~r~~~ 103 (117)
T 1v62_A 92 EKVRLEILPVPQ 103 (117)
T ss_dssp SEEEEEECCBTT
T ss_pred CeEEEEEEECCC
Confidence 788999998654
No 92
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.34 E-value=5.2e-07 Score=72.34 Aligned_cols=79 Identities=9% Similarity=0.063 Sum_probs=66.3
Q ss_pred hhcCCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcC
Q 023871 187 ERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN 266 (276)
Q Consensus 187 ~r~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLg 266 (276)
-...|++++++..++... .....-++..|..+++.|+|++|+..|++|+.++|++. .+|+|++.||.++|
T Consensus 16 ~~~~~~~~~A~~~~~~a~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 16 AADKKDWKGALDAFSAVQ-------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA---VAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHTTCHHHHHHHHHTSS-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHc-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch---HHHHHHHHHHHHcc
Confidence 346788888877776531 11344678999999999999999999999999999985 68999999999999
Q ss_pred ChhHHHhhh
Q 023871 267 QVPLLLALI 275 (276)
Q Consensus 267 q~~eAI~aL 275 (276)
++++|+..+
T Consensus 86 ~~~~A~~~~ 94 (213)
T 1hh8_A 86 KYDLAIKDL 94 (213)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 999999876
No 93
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=98.34 E-value=5e-07 Score=70.59 Aligned_cols=83 Identities=14% Similarity=0.262 Sum_probs=63.6
Q ss_pred cceEEEEecCc----ceeEEeeeC-----CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHh
Q 023871 84 YEEYEVEIEQP----YGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI 154 (276)
Q Consensus 84 ~~~y~V~l~KP----LGl~f~e~~-----dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~ai 154 (276)
...+.|+|.|+ +|+.+..+. +.+++|..|.++|.|+++|.|++||+|+.+... .+.....+..+..+|
T Consensus 19 ~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~---~v~~~~~~~~~~~~l 95 (117)
T 2o2t_A 19 RHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQ---ALDQTITHQQAISIL 95 (117)
T ss_dssp SCEEEEEEECCSSSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTE---ECCTTSCHHHHHHHH
T ss_pred CeEEEEEEEECCCCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCE---ECCCCCCHHHHHHHH
Confidence 35688898886 788887653 348999999999999999999999999998742 332112455667777
Q ss_pred hcccCceEEEEeecC
Q 023871 155 RQRVGPLLMKMQKRY 169 (276)
Q Consensus 155 r~r~gpv~L~l~R~~ 169 (276)
+.....+.|.+.|..
T Consensus 96 ~~~~~~v~l~v~R~~ 110 (117)
T 2o2t_A 96 QKAKDTVQLVIARGS 110 (117)
T ss_dssp HHCCSEEEEEEESSC
T ss_pred HcCCCEEEEEEEeCC
Confidence 766678899999853
No 94
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.33 E-value=2.1e-06 Score=61.90 Aligned_cols=83 Identities=14% Similarity=0.035 Sum_probs=65.2
Q ss_pred HHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871 185 RAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS 263 (276)
Q Consensus 185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya 263 (276)
..-...|++++++..++. ..++... ..-++..|..++..|+|++|+..|++++.+.|++. .++++++.||.
T Consensus 20 ~~~~~~~~~~~A~~~~~~-----~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~ 91 (131)
T 2vyi_A 20 NEQMKVENFEAAVHFYGK-----AIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS---KAYGRMGLALS 91 (131)
T ss_dssp HHHHHTTCHHHHHHHHHH-----HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHH-----HHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCH---HHHHHHHHHHH
Confidence 334477888888665554 3333221 34467889999999999999999999999999885 58999999999
Q ss_pred hcCChhHHHhhh
Q 023871 264 KLNQVPLLLALI 275 (276)
Q Consensus 264 KLgq~~eAI~aL 275 (276)
++|++++|+..+
T Consensus 92 ~~~~~~~A~~~~ 103 (131)
T 2vyi_A 92 SLNKHVEAVAYY 103 (131)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhCCHHHHHHHH
Confidence 999999999875
No 95
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.33 E-value=1.7e-06 Score=67.71 Aligned_cols=80 Identities=25% Similarity=0.396 Sum_probs=59.7
Q ss_pred ceEEEEecC----cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCc
Q 023871 85 EEYEVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP 160 (276)
Q Consensus 85 ~~y~V~l~K----PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gp 160 (276)
....|+|.| ++|+.+... +++++|..|.+++.|+++|.+++||+|+.+... .+- ...+.++...|+...++
T Consensus 25 ~~~~v~l~k~~~~~lG~~i~~~-~~gv~V~~V~~~spA~~aGll~~GD~I~~vng~---~v~-~~~~~~~~~~l~~~~~~ 99 (113)
T 1va8_A 25 TVKIVRIEKARDIPLGATVRNE-MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGI---EIR-GKDVNEVFDLLSDMHGT 99 (113)
T ss_dssp ECEEEEEEECTTCCCCEEEEEC-SSSEEEEEECTTSHHHHHTCCCTTCEEEEETTE---ECT-TCCHHHHHHHHHHCCEE
T ss_pred ceEEEEEEeCCCCceeEEEEeC-CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCE---ECC-CCCHHHHHHHHHcCCCe
Confidence 335577764 788888764 679999999999999999966999999998642 221 11345677777766678
Q ss_pred eEEEEeecC
Q 023871 161 LLMKMQKRY 169 (276)
Q Consensus 161 v~L~l~R~~ 169 (276)
+.|++.|..
T Consensus 100 v~l~v~r~~ 108 (113)
T 1va8_A 100 LTFVLIPSS 108 (113)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEECC
Confidence 999998743
No 96
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.33 E-value=2.5e-06 Score=65.86 Aligned_cols=80 Identities=25% Similarity=0.448 Sum_probs=61.0
Q ss_pred ceEEEEecC---cceeEEeeeC-----CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc
Q 023871 85 EEYEVEIEQ---PYGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ 156 (276)
Q Consensus 85 ~~y~V~l~K---PLGl~f~e~~-----dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~ 156 (276)
+.++|+|.| ++|+.+..+. +.+++|..|.+++.|+++|.|++||+|+.+... .+=. ..+-.++..++.
T Consensus 8 ~~~~v~l~~~~~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~---~v~~-~~~~~~~~~~~~ 83 (110)
T 1um1_A 8 YVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGS---SLLG-LGYLRAVDLIRH 83 (110)
T ss_dssp CEEEEEEECCTTCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSC---BCSS-CCHHHHHHHHHT
T ss_pred cEEEEEEEECCCccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCE---ECCC-CCHHHHHHHHHc
Confidence 678899865 5889987753 348999999999999999999999999998642 2211 123455666776
Q ss_pred ccCceEEEEeec
Q 023871 157 RVGPLLMKMQKR 168 (276)
Q Consensus 157 r~gpv~L~l~R~ 168 (276)
...++.|.+.|.
T Consensus 84 ~~~~v~l~v~R~ 95 (110)
T 1um1_A 84 GGKKMRFLVAKS 95 (110)
T ss_dssp CCSEEEEEEECC
T ss_pred CCCeEEEEEEeC
Confidence 567889999984
No 97
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.33 E-value=1.6e-06 Score=67.26 Aligned_cols=82 Identities=13% Similarity=0.198 Sum_probs=61.5
Q ss_pred ceEEEEec---CcceeEEeeeC------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhh
Q 023871 85 EEYEVEIE---QPYGLKFAKGR------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR 155 (276)
Q Consensus 85 ~~y~V~l~---KPLGl~f~e~~------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air 155 (276)
+..+|+|. +++|+.+..+. +.++||..|.++|.|+++|.|++||+|+.+-.. .|- ...+..+...|+
T Consensus 15 ~~~~v~l~k~~~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~---~v~-~~~~~~~~~~l~ 90 (108)
T 2d92_A 15 EVKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEY---CLD-NTSLAEAVEILK 90 (108)
T ss_dssp SCEEEEEEECSSCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSC---BCT-TCCHHHHHHHHH
T ss_pred ceEEEEEEECCCccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCE---ECC-CCCHHHHHHHHH
Confidence 33566665 47899987653 358999999999999999999999999998743 331 123556777787
Q ss_pred cc-cCceEEEEeecCC
Q 023871 156 QR-VGPLLMKMQKRYG 170 (276)
Q Consensus 156 ~r-~gpv~L~l~R~~~ 170 (276)
.. .+++.|++.|+..
T Consensus 91 ~~~~~~v~l~v~R~~~ 106 (108)
T 2d92_A 91 AVPPGLVHLGICSGPS 106 (108)
T ss_dssp HSCSEEEEEEEECCCC
T ss_pred hCCCCeEEEEEEcCCC
Confidence 64 5689999999753
No 98
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=98.33 E-value=1.1e-06 Score=69.90 Aligned_cols=85 Identities=16% Similarity=0.276 Sum_probs=63.8
Q ss_pred ceEEEEecC----cceeEEeeeCC-----CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhh
Q 023871 85 EEYEVEIEQ----PYGLKFAKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR 155 (276)
Q Consensus 85 ~~y~V~l~K----PLGl~f~e~~d-----Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air 155 (276)
+..+|+|.| +||+.+..+.+ .++||..|.++|.|+++|.|++||+|+.+... .+.....+..++..|+
T Consensus 25 ~~~~v~l~k~~~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~---~v~~~~~~~~~~~~l~ 101 (128)
T 2db5_A 25 QIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHT---PLDQNISHQQAIALLQ 101 (128)
T ss_dssp EEEEEEEECCSSSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSC---BCSTTSCHHHHHHHHH
T ss_pred ceEEEEEEECCCCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECCCCCCHHHHHHHHH
Confidence 456677765 47888865432 28999999999999999999999999998742 3331235556777787
Q ss_pred cccCceEEEEeecCCCc
Q 023871 156 QRVGPLLMKMQKRYGKM 172 (276)
Q Consensus 156 ~r~gpv~L~l~R~~~~~ 172 (276)
.....|.|.+.|.....
T Consensus 102 ~~~~~v~l~v~r~~~~~ 118 (128)
T 2db5_A 102 QTTGSLRLIVAREPVHT 118 (128)
T ss_dssp HCCSEEEEEEEECCCSS
T ss_pred cCCCeEEEEEEcCCCCC
Confidence 76678899999976543
No 99
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=98.33 E-value=2.6e-06 Score=64.68 Aligned_cols=81 Identities=23% Similarity=0.394 Sum_probs=60.1
Q ss_pred ceEEEEecC---cceeEEeeeC-------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHh
Q 023871 85 EEYEVEIEQ---PYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI 154 (276)
Q Consensus 85 ~~y~V~l~K---PLGl~f~e~~-------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~ai 154 (276)
...+|+|.| ++|+.+..+. +.+++|..|.+++.|+++|.|++||+|+.+... .+=. ..+..+...+
T Consensus 7 ~~~~v~l~~~~~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~---~v~~-~~~~~~~~~~ 82 (101)
T 2jik_A 7 TEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQ---DLKN-LLHQDAVDLF 82 (101)
T ss_dssp EEEEEEEECCTTCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTE---ECSS-CCHHHHHHHH
T ss_pred ccEEEEEEeCCCCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCE---ECCC-CCHHHHHHHH
Confidence 557788865 6889998763 359999999999999999999999999998642 2211 1234556666
Q ss_pred hcccCceEEEEeecC
Q 023871 155 RQRVGPLLMKMQKRY 169 (276)
Q Consensus 155 r~r~gpv~L~l~R~~ 169 (276)
+....++.|.+.|..
T Consensus 83 ~~~g~~v~l~v~R~~ 97 (101)
T 2jik_A 83 RNAGYAVSLRVQHRL 97 (101)
T ss_dssp HTCCSEEEEEEEEES
T ss_pred HhCCCeEEEEEEeCC
Confidence 654567899998853
No 100
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=98.32 E-value=1.8e-06 Score=64.86 Aligned_cols=80 Identities=26% Similarity=0.462 Sum_probs=58.6
Q ss_pred cceEEEEecCc---ceeEEeee--------CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHH
Q 023871 84 YEEYEVEIEQP---YGLKFAKG--------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMY 152 (276)
Q Consensus 84 ~~~y~V~l~KP---LGl~f~e~--------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~ 152 (276)
++++.|++.|. +|+.+..+ .+++++|..|.|++.|+++| |++||+|+.+... .+-....+ ..+.
T Consensus 2 ~~~~~v~~~~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~---~v~~~~~~-~~~~ 76 (97)
T 2w4f_A 2 MEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGV---ALQGAEHH-EAVE 76 (97)
T ss_dssp -CEEEEEEECBTTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHT-CCTTCEEEEETTE---ECTTCCHH-HHHH
T ss_pred ceEEEEEEEeCCCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCE---ECCCcCHH-HHHH
Confidence 46788888775 77888754 24699999999999999999 9999999998753 33323232 2334
Q ss_pred HhhcccCceEEEEeec
Q 023871 153 TIRQRVGPLLMKMQKR 168 (276)
Q Consensus 153 air~r~gpv~L~l~R~ 168 (276)
.++....++.|.+.|.
T Consensus 77 ~~~~~g~~v~l~v~R~ 92 (97)
T 2w4f_A 77 ALRGAGTAVQMRVWRE 92 (97)
T ss_dssp HHHTSCSEEEEEEECC
T ss_pred HHhCCCCeEEEEEEeC
Confidence 4555567889999884
No 101
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.32 E-value=1.3e-06 Score=63.19 Aligned_cols=58 Identities=16% Similarity=0.174 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.+.++..|..++..|+|++|+..|++++..+|++. .+++|+|.||..+|++++|+..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~ 61 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM---TYITNQAAVYFEKGDYNKCRELC 61 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH---HHHHHHHHHHHHhccHHHHHHHH
Confidence 45677899999999999999999999999999885 68999999999999999999875
No 102
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.32 E-value=5.3e-07 Score=75.06 Aligned_cols=80 Identities=9% Similarity=-0.017 Sum_probs=51.5
Q ss_pred cCCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCCh
Q 023871 189 NSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV 268 (276)
Q Consensus 189 ~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~ 268 (276)
..|++++++ ..|+++.++....+-++..|..+...|+|++|+..|+++|+++|++. .+++|++.+|.++|++
T Consensus 130 ~~g~~~~A~-----~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g~~ 201 (217)
T 2pl2_A 130 LLGERDKAE-----ASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL---DLRVRYASALLLKGKA 201 (217)
T ss_dssp HTTCHHHHH-----HHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH---HHHHHHHHHHTC----
T ss_pred HcCChHHHH-----HHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHccCH
Confidence 455555553 44555555552234467889999999999999999999999999886 5899999999999999
Q ss_pred hHHHhhhC
Q 023871 269 PLLLALIE 276 (276)
Q Consensus 269 ~eAI~aLE 276 (276)
++|+..++
T Consensus 202 ~~A~~~~~ 209 (217)
T 2pl2_A 202 EEAARAAA 209 (217)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 99988764
No 103
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.32 E-value=1.2e-06 Score=68.18 Aligned_cols=84 Identities=20% Similarity=0.369 Sum_probs=63.3
Q ss_pred ceEEEEec---CcceeEEeeeCC---CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhccc
Q 023871 85 EEYEVEIE---QPYGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV 158 (276)
Q Consensus 85 ~~y~V~l~---KPLGl~f~e~~d---Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~ 158 (276)
+.+.|+|. .+||+.+..+.+ ++++|..|.+++.|+++|.|++||+|+++... .+-. ..+..++..|+...
T Consensus 17 ~~~~v~l~~~~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~---~v~~-~~~~~~~~~l~~~~ 92 (116)
T 2dm8_A 17 QEMIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGV---DLRN-SSHEEAITALRQTP 92 (116)
T ss_dssp SCEEEEEECCSSCCCCCCBCCTTSSCSSEECCCCCSSSHHHHHTCCCTTCEEEEETTE---ECSS-SCHHHHHHHHHTCC
T ss_pred CEEEEEEEECCCcccEEEeCCCCCCcCCEEEEEECCCChHHhCCCCCCCCEEEEECCE---ECCC-CCHHHHHHHHHhCC
Confidence 45778885 468899987655 69999999999999999999999999998642 2211 11445667777555
Q ss_pred CceEEEEeecCCCc
Q 023871 159 GPLLMKMQKRYGKM 172 (276)
Q Consensus 159 gpv~L~l~R~~~~~ 172 (276)
.++.|.+.|.....
T Consensus 93 ~~v~l~v~R~~~~~ 106 (116)
T 2dm8_A 93 QKVRLVVYRDEAHY 106 (116)
T ss_dssp SEEEEEEECCSSCC
T ss_pred CeEEEEEEeCCccc
Confidence 78999999865543
No 104
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.31 E-value=1.1e-06 Score=73.64 Aligned_cols=60 Identities=23% Similarity=0.346 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+.++..|+.+++.|+|++|+..|+++|...|+++....++|++|.||.++|++++|+..+
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~ 75 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEY 75 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 456788888888888888888888888888887555678888888888888888888765
No 105
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=2.6e-06 Score=67.00 Aligned_cols=86 Identities=22% Similarity=0.361 Sum_probs=63.9
Q ss_pred ccccceEEEEecC---cceeEEeeeC-------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhH
Q 023871 81 EEKYEEYEVEIEQ---PYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRT 150 (276)
Q Consensus 81 ~~~~~~y~V~l~K---PLGl~f~e~~-------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~ 150 (276)
......++|+|.| +||+.+..+. +.+++|..|.+++.|+++|.|++||+|+.+-.. .|-... +-.+
T Consensus 13 ~~~~~~~~v~l~r~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~---~v~~~~-~~~~ 88 (120)
T 2eno_A 13 DYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQ---DLKNLL-HQDA 88 (120)
T ss_dssp CEEEEEEEEEEECCSSSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTE---ECCSCC-HHHH
T ss_pred CCCCceEEEEEEECCCCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCE---ECCCCC-HHHH
Confidence 3445677888876 5889998753 459999999999999999999999999998742 222211 3356
Q ss_pred HHHhhcccCceEEEEeecCC
Q 023871 151 MYTIRQRVGPLLMKMQKRYG 170 (276)
Q Consensus 151 ~~air~r~gpv~L~l~R~~~ 170 (276)
+..++.....+.|.+.|...
T Consensus 89 ~~~~~~~g~~v~l~v~R~~~ 108 (120)
T 2eno_A 89 VDLFRNAGYAVSLRVQHRLQ 108 (120)
T ss_dssp HHHHHHHCSEEEEEEEEEEE
T ss_pred HHHHHcCCCeEEEEEEeCCc
Confidence 66676555678999988654
No 106
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=98.30 E-value=2.2e-06 Score=67.79 Aligned_cols=82 Identities=23% Similarity=0.400 Sum_probs=61.7
Q ss_pred ccceEEEEecC---cceeEEeeeC-------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHH
Q 023871 83 KYEEYEVEIEQ---PYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMY 152 (276)
Q Consensus 83 ~~~~y~V~l~K---PLGl~f~e~~-------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~ 152 (276)
+.+..+|+|.| .+|+.+..+. +.+++|..|.++|.|+++|.|++||+|+.+... .+- ......+..
T Consensus 22 ~~~~~~v~l~k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~---~v~-~~~~~~~~~ 97 (117)
T 2byg_A 22 SMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNY---SLE-EVTHEEAVA 97 (117)
T ss_dssp EEEEEEEEEECBTTBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTE---ECT-TCCHHHHHH
T ss_pred CCceEEEEEEeCCCCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECC-CCCHHHHHH
Confidence 33556677764 7889998653 358999999999999999999999999998752 221 113456777
Q ss_pred HhhcccCceEEEEeec
Q 023871 153 TIRQRVGPLLMKMQKR 168 (276)
Q Consensus 153 air~r~gpv~L~l~R~ 168 (276)
.|+....+|.|++.|.
T Consensus 98 ~l~~~g~~v~l~v~R~ 113 (117)
T 2byg_A 98 ILKNTSEVVYLKVGKP 113 (117)
T ss_dssp HHHTCCSEEEEEEEEE
T ss_pred HHHcCCCeEEEEEEeC
Confidence 7876567889999884
No 107
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=98.29 E-value=2.8e-06 Score=65.63 Aligned_cols=80 Identities=19% Similarity=0.328 Sum_probs=60.7
Q ss_pred ceEEEEecC----cceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceeccc--chhHHHHhhcc
Q 023871 85 EEYEVEIEQ----PYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIRQR 157 (276)
Q Consensus 85 ~~y~V~l~K----PLGl~f~e~~d-Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~--~g~~~~air~r 157 (276)
+.++|+|.| .+|+.+....+ ++++|..|.+++.|+++|.|++||+|+++... +... +..+...++..
T Consensus 1 n~~~v~l~~~~~~glG~~~~~~~~~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~------~v~~~~~~~~~~~l~~~ 74 (112)
T 1qau_A 1 NVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDR------PLVDLSYDSALEVLRGI 74 (112)
T ss_dssp CEEEEEEECBTTTBTSEEEEECSSSSCEEEEEECTTSHHHHHTCCCTTCEEEEETTE------ECTTSCHHHHHHHHHHS
T ss_pred CEEEEEEEcCCCCceeEEEEecCCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCE------ECCCCCHHHHHHHHHhC
Confidence 357888844 58999987653 49999999999999999966999999998743 2223 55566677654
Q ss_pred -cCceEEEEeecCC
Q 023871 158 -VGPLLMKMQKRYG 170 (276)
Q Consensus 158 -~gpv~L~l~R~~~ 170 (276)
..++.|.+.|.-.
T Consensus 75 ~g~~v~l~v~R~g~ 88 (112)
T 1qau_A 75 ASETHVVLILRGPE 88 (112)
T ss_dssp CSSSEEEEEEECCT
T ss_pred CCCcEEEEEEeCCc
Confidence 4688999998643
No 108
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=98.29 E-value=2.9e-06 Score=65.51 Aligned_cols=82 Identities=15% Similarity=0.332 Sum_probs=62.2
Q ss_pred ccceEEEEecC---cceeEEeeeCC-----CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcc--eecccchhHHH
Q 023871 83 KYEEYEVEIEQ---PYGLKFAKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEI--WPAAEYGRTMY 152 (276)
Q Consensus 83 ~~~~y~V~l~K---PLGl~f~e~~d-----Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdev--w~a~~~g~~~~ 152 (276)
..+.+.+++.| ++|+.+....+ ++++|..|.+++.|+++|.|++||+|+.+... .+ |. +..+..
T Consensus 9 ~~~~~~~~l~~~~~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~---~v~~~~---~~~~~~ 82 (111)
T 2koj_A 9 VGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGV---DLAGKS---QEEVVS 82 (111)
T ss_dssp SCEEEEEEEECBTTBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTE---ECTTSC---HHHHHH
T ss_pred cCcEEEEEEEECCCccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCE---ECCCCC---HHHHHH
Confidence 34678888865 68999987643 58999999999999999989999999998753 33 32 345566
Q ss_pred Hhhcc--cCceEEEEeecCC
Q 023871 153 TIRQR--VGPLLMKMQKRYG 170 (276)
Q Consensus 153 air~r--~gpv~L~l~R~~~ 170 (276)
.|+.. ..++.|.+.|.-.
T Consensus 83 ~l~~~~~g~~v~l~v~R~~~ 102 (111)
T 2koj_A 83 LLRSTKMEGTVSLLVFRQEE 102 (111)
T ss_dssp HHHHCCCSSEEEEEEEECCC
T ss_pred HHHhCCCCCeEEEEEEeCCC
Confidence 66653 4678999988543
No 109
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=98.29 E-value=3e-06 Score=63.31 Aligned_cols=80 Identities=26% Similarity=0.456 Sum_probs=58.7
Q ss_pred ceEEEEecC---cceeEEeeeC-------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHh
Q 023871 85 EEYEVEIEQ---PYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI 154 (276)
Q Consensus 85 ~~y~V~l~K---PLGl~f~e~~-------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~ai 154 (276)
+.++|+|.| ++|+.+..+. +.+++|..|.|++.|+++|.|++||+|+++... .+-. ..+..+...+
T Consensus 3 ~~~~v~l~k~~~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~---~v~~-~~~~~~~~~~ 78 (94)
T 2fe5_A 3 TIMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNT---NLQD-VRHEEAVASL 78 (94)
T ss_dssp CEEEEEEECCTTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTE---ECTT-CBHHHHHHHH
T ss_pred EEEEEEEEECCCCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCE---ECCC-CCHHHHHHHH
Confidence 346777754 6899997542 348999999999999999999999999998642 2211 1234556667
Q ss_pred hcccCceEEEEeec
Q 023871 155 RQRVGPLLMKMQKR 168 (276)
Q Consensus 155 r~r~gpv~L~l~R~ 168 (276)
+...+++.|.+.|.
T Consensus 79 ~~~~~~v~l~v~R~ 92 (94)
T 2fe5_A 79 KNTSDMVYLKVAKP 92 (94)
T ss_dssp HTCCSEEEEEEECC
T ss_pred HcCCCeEEEEEEcC
Confidence 75566889999874
No 110
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=98.29 E-value=1.5e-06 Score=68.86 Aligned_cols=80 Identities=15% Similarity=0.320 Sum_probs=61.7
Q ss_pred ceEEEEecC---cceeEEeeeC-----CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc
Q 023871 85 EEYEVEIEQ---PYGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ 156 (276)
Q Consensus 85 ~~y~V~l~K---PLGl~f~e~~-----dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~ 156 (276)
+..+|+|.| ++|+.+..+. +.+++|..|.|+|.|+++|.|++||+|+.+... .+-. ..+..+...|+.
T Consensus 25 ~~~~v~L~k~~~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~---~v~~-~~~~~~~~~l~~ 100 (117)
T 2fne_A 25 QCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQ---SLEG-VTHEEAVAILKR 100 (117)
T ss_dssp EEEEEEECCBTTBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTE---ECTT-CCHHHHHHHHHH
T ss_pred ccEEEEEEeCCCcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCE---ECCC-CCHHHHHHHHHc
Confidence 456788875 6889987653 348999999999999999999999999998742 2211 145567777886
Q ss_pred ccCceEEEEeec
Q 023871 157 RVGPLLMKMQKR 168 (276)
Q Consensus 157 r~gpv~L~l~R~ 168 (276)
..+++.|.+.|.
T Consensus 101 ~~~~v~l~v~R~ 112 (117)
T 2fne_A 101 TKGTVTLMVLSS 112 (117)
T ss_dssp CCSSEEEEEEEC
T ss_pred CCCeEEEEEEeC
Confidence 677899999885
No 111
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.29 E-value=7.2e-07 Score=63.09 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=50.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
++..|..++..|+|++|+..|++++.++|++. .+++|+|.||..+|++++|+..+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~a~~~~~~~~~~~A~~~~ 63 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEES---KYWLMKGKALYNLERYEEAVDCY 63 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH---HHHHHHHHHHHHccCHHHHHHHH
Confidence 45778899999999999999999999999985 58999999999999999999876
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.28 E-value=1.1e-06 Score=73.19 Aligned_cols=59 Identities=20% Similarity=0.228 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.+++.|..+++.|+|++|+..|++++...|+++....++++++.||.++|++++|++.+
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~ 64 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAI 64 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 45566666666666666666666666666665544456666666666666666666654
No 113
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=98.28 E-value=1.9e-06 Score=64.99 Aligned_cols=78 Identities=19% Similarity=0.385 Sum_probs=58.6
Q ss_pred EEEEecC----cceeEEeeeCC--------CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHh
Q 023871 87 YEVEIEQ----PYGLKFAKGRD--------GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI 154 (276)
Q Consensus 87 y~V~l~K----PLGl~f~e~~d--------Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~ai 154 (276)
.+|+|.| ++|+.+..+.+ .+++|..|.+++.|+++|.|++||+|+++... .+-.. ....+...+
T Consensus 7 ~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~---~v~~~-~~~~~~~~l 82 (98)
T 1ihj_A 7 HMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGK---DVRNS-TEQAVIDLI 82 (98)
T ss_dssp EEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTE---ECTTC-CHHHHHHHH
T ss_pred EEEEEEeCCCCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECCCC-CHHHHHHHH
Confidence 5688888 89999976532 28999999999999999999999999998753 22211 123456666
Q ss_pred hcccCceEEEEeec
Q 023871 155 RQRVGPLLMKMQKR 168 (276)
Q Consensus 155 r~r~gpv~L~l~R~ 168 (276)
+....++.|.+.|.
T Consensus 83 ~~~g~~v~l~v~R~ 96 (98)
T 1ihj_A 83 KEADFKIELEIQTF 96 (98)
T ss_dssp HHSCSEEEEEEEEC
T ss_pred hcCCCeEEEEEEeC
Confidence 66566889999884
No 114
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.28 E-value=1e-06 Score=63.80 Aligned_cols=86 Identities=12% Similarity=0.110 Sum_probs=65.9
Q ss_pred HHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh----hHHHHHHHHh
Q 023871 185 RAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE----ESSVASYNVA 259 (276)
Q Consensus 185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~----e~a~A~YN~A 259 (276)
..-...|++++++..++. +.++... ..-++..|..++..|+|++|+..|++++.+.|++. ....+++|+|
T Consensus 12 ~~~~~~~~~~~A~~~~~~-----a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 12 NDAYKKKDFDTALKHYDK-----AKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHTTCHHHHHHHHHH-----HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHH-----HHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 344577888888666554 3332221 33456889999999999999999999998877542 1257899999
Q ss_pred HHHHhcCChhHHHhhh
Q 023871 260 CCYSKLNQVPLLLALI 275 (276)
Q Consensus 260 cCyaKLgq~~eAI~aL 275 (276)
.||.++|++++|++.+
T Consensus 87 ~~~~~~~~~~~A~~~~ 102 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFY 102 (131)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHhccHHHHHHHH
Confidence 9999999999999876
No 115
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.28 E-value=2.6e-06 Score=64.90 Aligned_cols=78 Identities=21% Similarity=0.425 Sum_probs=59.5
Q ss_pred EEEEecCc----ceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCc
Q 023871 87 YEVEIEQP----YGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP 160 (276)
Q Consensus 87 y~V~l~KP----LGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gp 160 (276)
.+|+|.|. ||+.+....+ .+++|..|.+++.|+++| |++||+|+.+... .+-... +-.++..++. ..+
T Consensus 12 ~~v~l~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~ing~---~v~~~~-~~~~~~~~~~-~~~ 85 (100)
T 2eeh_A 12 HSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAG-LCVGDKITEVNGL---SLESTT-MGSAVKVLTS-SSR 85 (100)
T ss_dssp CCEEECCCSSSSCSEEEECCTTTTCCEEEEEECTTSHHHHHT-CCSSCEEEEETTE---ECSSCC-HHHHHHHHHS-CSS
T ss_pred EEEEEEECCCCCccEEEEccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECCCCC-HHHHHHhhcC-CCE
Confidence 44566533 9999987643 489999999999999999 9999999998753 333332 5667777777 688
Q ss_pred eEEEEeecCC
Q 023871 161 LLMKMQKRYG 170 (276)
Q Consensus 161 v~L~l~R~~~ 170 (276)
+.|.+.|.--
T Consensus 86 v~l~v~R~g~ 95 (100)
T 2eeh_A 86 LHMMVRRMGS 95 (100)
T ss_dssp EEEEEEECSC
T ss_pred EEEEEEECCc
Confidence 9999998543
No 116
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=9.7e-07 Score=66.76 Aligned_cols=77 Identities=21% Similarity=0.361 Sum_probs=60.1
Q ss_pred EEEEecC----cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceE
Q 023871 87 YEVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL 162 (276)
Q Consensus 87 y~V~l~K----PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~ 162 (276)
..|+|.| +||+.+.. .+++++|..|.|++.|+++|.+++||+|+.+.. ..+ ...+..+...|+...+++.
T Consensus 8 r~v~l~k~~~~~lG~~i~~-~~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing---~~v--~~~~~~~~~~l~~~~~~v~ 81 (91)
T 2e7k_A 8 RMVGIRKTAGEHLGVTFRV-EGGELVIARILHGGMVAQQGLLHVGDIIKEVNG---QPV--GSDPRALQELLRNASGSVI 81 (91)
T ss_dssp CBCCBCCCTTCCCCEEEEE-SSSSEEEEEECSSSHHHHHCCCCTTCEEEEETT---EEC--TTCHHHHHHHHHTCCSSBC
T ss_pred EEEEEEECCCCcEeEEEEe-cCCCEEEEEECCCCHHHHcCCCCCCCEEEEECC---EEC--CCCHHHHHHHHHcCCCeEE
Confidence 3466654 79999987 467999999999999999988999999999864 344 1345566777776677899
Q ss_pred EEEeecC
Q 023871 163 MKMQKRY 169 (276)
Q Consensus 163 L~l~R~~ 169 (276)
|.+.|.+
T Consensus 82 l~v~~~~ 88 (91)
T 2e7k_A 82 LKILSGP 88 (91)
T ss_dssp EEEECCS
T ss_pred EEEEECC
Confidence 9988753
No 117
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.28 E-value=2.3e-06 Score=65.06 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 213 ERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 213 kqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
...+.++..|..++..|+|++|+..|++++.++|++. .+|+|++.||..+|++++|+..+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~a~~~~~~~~~~~A~~~~ 70 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA---IYYGNRSLAYLRTECYGYALGDA 70 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHcCCHHHHHHHH
Confidence 3456678999999999999999999999999999985 68999999999999999999875
No 118
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=98.27 E-value=2.4e-06 Score=68.49 Aligned_cols=82 Identities=22% Similarity=0.407 Sum_probs=61.0
Q ss_pred ceEEEEec-C---cceeEEeeeCC------CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHh
Q 023871 85 EEYEVEIE-Q---PYGLKFAKGRD------GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI 154 (276)
Q Consensus 85 ~~y~V~l~-K---PLGl~f~e~~d------Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~ai 154 (276)
..++|+|. + +||+.+..+.+ .++||..|.++|.|+++|.|++||+|++|-.. .+-. ..+..++..|
T Consensus 25 ~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~---~v~~-~~~~~~~~~l 100 (127)
T 1wg6_A 25 LTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGE---TLLG-KSNHEAMETL 100 (127)
T ss_dssp EEEEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTE---ESTT-SCHHHHHHHH
T ss_pred eEEEEEEeeCCCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCE---ECCC-CCHHHHHHHH
Confidence 45677776 3 59999987642 48999999999999999999999999998742 2211 1233666777
Q ss_pred hcc-------cCceEEEEeecCC
Q 023871 155 RQR-------VGPLLMKMQKRYG 170 (276)
Q Consensus 155 r~r-------~gpv~L~l~R~~~ 170 (276)
+.. .++|.|++.|..-
T Consensus 101 ~~~~~~~g~~~~~v~l~v~R~~~ 123 (127)
T 1wg6_A 101 RRSMSMEGNIRGMIQLVILRRSG 123 (127)
T ss_dssp HHHHHHHHHHTCEEEEEEEECSC
T ss_pred HHhhccccCCCCEEEEEEEeCCC
Confidence 743 5789999998654
No 119
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.27 E-value=2.1e-06 Score=65.56 Aligned_cols=82 Identities=22% Similarity=0.349 Sum_probs=60.8
Q ss_pred ccceEEEEecC---cceeEEeeeC----CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhh
Q 023871 83 KYEEYEVEIEQ---PYGLKFAKGR----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR 155 (276)
Q Consensus 83 ~~~~y~V~l~K---PLGl~f~e~~----dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air 155 (276)
..+.++|+|.| ++|+.+..+. +++++|..|.+++.|+++|.|++||+|+.+... .+-.. .+..++..++
T Consensus 9 ~~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~---~v~~~-~~~~~~~~~~ 84 (104)
T 2djt_A 9 ASGHFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGE---STQGL-THAQAVERIR 84 (104)
T ss_dssp CCCCEEEEEECCSSSCCEEEECCEETTEECCCEEEEECTTCHHHHHCSCCTTCBEEEETTE---ECTTC-CHHHHHHHHH
T ss_pred CCceEEEEEEeCCCCccEEEEeccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECCCC-CHHHHHHHHH
Confidence 34668888864 6788887642 468999999999999999999999999998753 22111 2445666666
Q ss_pred cccCceEEEEeec
Q 023871 156 QRVGPLLMKMQKR 168 (276)
Q Consensus 156 ~r~gpv~L~l~R~ 168 (276)
....++.|.+.|.
T Consensus 85 ~~g~~v~l~v~R~ 97 (104)
T 2djt_A 85 AGGPQLHLVIRRP 97 (104)
T ss_dssp HTCSEEEEEECCC
T ss_pred cCCCeEEEEEEEC
Confidence 5456789999884
No 120
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.27 E-value=2.6e-06 Score=67.53 Aligned_cols=84 Identities=19% Similarity=0.303 Sum_probs=62.5
Q ss_pred ccceEEEEecC---cceeEEeeeCC---CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc
Q 023871 83 KYEEYEVEIEQ---PYGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ 156 (276)
Q Consensus 83 ~~~~y~V~l~K---PLGl~f~e~~d---Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~ 156 (276)
+.+.++|+|.| +||+.+..+.+ .+++|..|.|+|.|+++|.|++||+|+.+... .+-.. ..-.++..++.
T Consensus 23 ~~~~~~v~l~k~~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~---~v~~~-~~~~~~~~~~~ 98 (124)
T 2daz_A 23 PGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQ---ILYGR-SHQNASAIIKT 98 (124)
T ss_dssp SSEEEEEEEECCSSCCCEEEECBSSTTSCCEEEEEECTTSHHHHHTCCCTTCEECEESSC---BCTTS-CHHHHHHHHHH
T ss_pred CCceEEEEEEeCCCccCEEEeccCCCCcCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECCCC-CHHHHHHHHHc
Confidence 34567888886 78899977643 59999999999999999999999999998642 33111 22345566766
Q ss_pred ccCceEEEEeecCC
Q 023871 157 RVGPLLMKMQKRYG 170 (276)
Q Consensus 157 r~gpv~L~l~R~~~ 170 (276)
..+++.|++.|...
T Consensus 99 ~~~~v~l~v~R~~~ 112 (124)
T 2daz_A 99 APSKVKLVFIRNED 112 (124)
T ss_dssp SCSEEEEEEEECTT
T ss_pred CCCeEEEEEEeCCC
Confidence 56789999998543
No 121
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.27 E-value=1.9e-06 Score=66.11 Aligned_cols=83 Identities=18% Similarity=0.392 Sum_probs=62.6
Q ss_pred ccceEEEEecC---cceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc
Q 023871 83 KYEEYEVEIEQ---PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR 157 (276)
Q Consensus 83 ~~~~y~V~l~K---PLGl~f~e~~--dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r 157 (276)
.++.++|+|.| ++|+.+..+. +.+++|..|.+++.|+++|.|++||+|+++-.. .+- -..+..++..|+..
T Consensus 7 ~~~~~~v~l~~~~~g~G~~i~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~---~v~-~~~~~~~~~~l~~~ 82 (103)
T 1uep_A 7 GYKELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGI---PVA-GKTHRYVIDLMHHA 82 (103)
T ss_dssp SEEEECCEEESSSSSCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTE---ECT-TSCHHHHHHHHHHH
T ss_pred CceEEEEEEEeCCCccCEEEeeecCCCCCeEEEEeCCCChHHhCCCCCCCCEEEEECCE---ECC-CCCHHHHHHHHHhC
Confidence 45677788876 5788887653 458999999999999999999999999998643 221 11345566677754
Q ss_pred --cCceEEEEeecC
Q 023871 158 --VGPLLMKMQKRY 169 (276)
Q Consensus 158 --~gpv~L~l~R~~ 169 (276)
..+|.|++.|..
T Consensus 83 ~~g~~v~l~v~R~~ 96 (103)
T 1uep_A 83 ARNGQVNLTVRRKV 96 (103)
T ss_dssp HHHTEEEEEEEEEC
T ss_pred CCCCcEEEEEEeCC
Confidence 578999999864
No 122
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.27 E-value=1e-06 Score=82.71 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=58.6
Q ss_pred HhhHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh------------hHHHHHHHHhHHHHhcCChhHH
Q 023871 205 YMKKKEQKE-RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE------------ESSVASYNVACCYSKLNQVPLL 271 (276)
Q Consensus 205 Ykk~Kelkk-qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~------------e~a~A~YN~AcCyaKLgq~~eA 271 (276)
|.+..+++. ....+++.|+.+++.|+|++|+..|++||.++|++. ....+|+|+|.||.+++++++|
T Consensus 257 ~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A 336 (457)
T 1kt0_A 257 WEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKA 336 (457)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 444444443 345678999999999999999999999999999872 1257899999999999999999
Q ss_pred Hhhh
Q 023871 272 LALI 275 (276)
Q Consensus 272 I~aL 275 (276)
+..+
T Consensus 337 ~~~~ 340 (457)
T 1kt0_A 337 VECC 340 (457)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 123
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=98.26 E-value=1.6e-06 Score=63.62 Aligned_cols=78 Identities=24% Similarity=0.380 Sum_probs=55.7
Q ss_pred eEEEEecC--cceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCce
Q 023871 86 EYEVEIEQ--PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL 161 (276)
Q Consensus 86 ~y~V~l~K--PLGl~f~e~~--dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv 161 (276)
.+.|+|.+ ++|+.+..+. +.+++|..|.|++.|+++| |++||+|+.+... .+-.. .+..+...++...+++
T Consensus 2 ~~~v~l~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aG-l~~GD~I~~vng~---~v~~~-~~~~~~~~~~~~~~~v 76 (85)
T 1rgw_A 2 AYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQ-LSQGDLVVAIDGV---NTDTM-THLEAQNKIKSASYNL 76 (85)
T ss_dssp EEEEEECCSSCCCEEECCCGGGTSCCBEEEECTTSHHHHSS-CCCCSBEEEETTE---ECTTC-CHHHHHHHHTTCSSCE
T ss_pred cEEEEEeCCCccCEEEEeccCCCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECCCc-CHHHHHHHHHcCCCeE
Confidence 46677765 4677776443 3379999999999999998 9999999998742 22211 2245566666556779
Q ss_pred EEEEeec
Q 023871 162 LMKMQKR 168 (276)
Q Consensus 162 ~L~l~R~ 168 (276)
.|.+.|.
T Consensus 77 ~l~v~R~ 83 (85)
T 1rgw_A 77 SLTLQKS 83 (85)
T ss_dssp EEEEESC
T ss_pred EEEEEeC
Confidence 9999874
No 124
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=98.26 E-value=3.4e-06 Score=64.74 Aligned_cols=85 Identities=19% Similarity=0.330 Sum_probs=60.2
Q ss_pred cccceEEEEec--CcceeEEeee-----CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHh
Q 023871 82 EKYEEYEVEIE--QPYGLKFAKG-----RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI 154 (276)
Q Consensus 82 ~~~~~y~V~l~--KPLGl~f~e~-----~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~ai 154 (276)
.+.+.++|+|. .++|+.+..+ .+.+++|..|.++|.|+++|.|++||+|+.+... .+-. ...-.+...+
T Consensus 8 ~~~~~~~v~l~~~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~---~v~~-~~~~~~~~~~ 83 (106)
T 3axa_A 8 KEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGR---SLVG-LSQERAAELM 83 (106)
T ss_dssp --CCEEEEEEECSSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTE---ECTT-CCHHHHHHHH
T ss_pred CCceEEEEEECCCCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECCC-CCHHHHHHHH
Confidence 34566778773 3567777643 3448999999999999999999999999998743 2211 1234556667
Q ss_pred hcccCceEEEEeecCC
Q 023871 155 RQRVGPLLMKMQKRYG 170 (276)
Q Consensus 155 r~r~gpv~L~l~R~~~ 170 (276)
+....++.|.+.|.-.
T Consensus 84 ~~~g~~v~l~v~R~~~ 99 (106)
T 3axa_A 84 TRTSSVVTLEVAKQGA 99 (106)
T ss_dssp HTCCSEEEEEEECCCS
T ss_pred HcCCCeEEEEEEeCCc
Confidence 6656688999998543
No 125
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=98.26 E-value=1.7e-06 Score=67.20 Aligned_cols=83 Identities=19% Similarity=0.376 Sum_probs=62.3
Q ss_pred cceEEEEecC---cceeEEee---e-----CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHH
Q 023871 84 YEEYEVEIEQ---PYGLKFAK---G-----RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMY 152 (276)
Q Consensus 84 ~~~y~V~l~K---PLGl~f~e---~-----~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~ 152 (276)
.+.++|+|.| ++|+.+.. + .+.++||..|.|+|.|+++|.|++||+|+.+... .+-.. ..-.+..
T Consensus 3 ~~~~~v~l~k~~~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~---~v~~~-~~~~~~~ 78 (113)
T 2g5m_B 3 MELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGT---SLVGV-TQSFAAS 78 (113)
T ss_dssp CEEEEEECCCCSSCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTE---ECSSC-CHHHHHH
T ss_pred eEEEEEEEEeCCCCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECCCC-CHHHHHH
Confidence 4667888864 58898877 2 3459999999999999999999999999998743 23211 2345566
Q ss_pred HhhcccCceEEEEeecCC
Q 023871 153 TIRQRVGPLLMKMQKRYG 170 (276)
Q Consensus 153 air~r~gpv~L~l~R~~~ 170 (276)
.++....++.|.+.|..-
T Consensus 79 ~~~~~g~~v~l~v~R~~~ 96 (113)
T 2g5m_B 79 VLRNTKGRVRFMIGRERP 96 (113)
T ss_dssp HHHHSCSSCEEEEEECCC
T ss_pred HHhcCCCeEEEEEEeCCC
Confidence 677667789999998654
No 126
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=98.26 E-value=2.4e-06 Score=66.87 Aligned_cols=86 Identities=22% Similarity=0.397 Sum_probs=63.2
Q ss_pred ccccceEEEEecCc---ceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc
Q 023871 81 EEKYEEYEVEIEQP---YGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ 156 (276)
Q Consensus 81 ~~~~~~y~V~l~KP---LGl~f~e~~d-Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~ 156 (276)
+.+.+..+|+|.|+ +|+.+....+ ++++|..|.+++.|+++|.|++||+|+++... .+-.... -..+..++.
T Consensus 10 ~~~~~~~~v~l~k~~~glG~~l~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~---~v~~~~~-~~~~~~~~~ 85 (119)
T 1tp5_A 10 DIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGV---DLRNASH-EQAAIALKN 85 (119)
T ss_dssp CCCCSCEEEEEECTTSCCCEEEEECGGGCCEEEEEECTTSHHHHHSCCCTTEEEEEETTE---ECTTCCH-HHHHHHHHT
T ss_pred CCCCccEEEEEEECCCCccEEEecCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECCCCCH-HHHHHHHHc
Confidence 44557788999876 8999987654 59999999999999999999999999998742 2221111 233445555
Q ss_pred ccCceEEEEeecCC
Q 023871 157 RVGPLLMKMQKRYG 170 (276)
Q Consensus 157 r~gpv~L~l~R~~~ 170 (276)
...++.|.+.|+..
T Consensus 86 ~~~~v~l~v~r~~~ 99 (119)
T 1tp5_A 86 AGQTVTIIAQYKPE 99 (119)
T ss_dssp SCSEEEEEEEECHH
T ss_pred CCCeEEEEEEECCc
Confidence 46678999998643
No 127
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.26 E-value=3.1e-06 Score=73.47 Aligned_cols=80 Identities=10% Similarity=-0.005 Sum_probs=63.5
Q ss_pred CCcchhHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH----HHHHHHHh
Q 023871 191 GVISNRVREIQMQNYMKKKEQKER-------REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES----SVASYNVA 259 (276)
Q Consensus 191 G~i~~al~Eiq~~nYkk~Kelkkq-------ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~----a~A~YN~A 259 (276)
|++++++.. |+++.++... ..-+.+-|..+.+.|+|++|+..|++|+.+.|++... ..+++|++
T Consensus 132 g~~~~A~~~-----~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 132 HDYAKAIDC-----YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp CCHHHHHHH-----HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred cCHHHHHHH-----HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 888888554 4455554432 2335678999999999999999999999999987542 34799999
Q ss_pred HHHHhcCChhHHHhhh
Q 023871 260 CCYSKLNQVPLLLALI 275 (276)
Q Consensus 260 cCyaKLgq~~eAI~aL 275 (276)
.||..+|++++|+.++
T Consensus 207 ~~~~~~g~~~~A~~~~ 222 (292)
T 1qqe_A 207 LCQLAATDAVAAARTL 222 (292)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHH
Confidence 9999999999999876
No 128
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.26 E-value=1.5e-06 Score=70.97 Aligned_cols=57 Identities=23% Similarity=0.312 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC-ChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKP-TPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P-~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+.++..|..+++.|+|++|+..|+++|+++| .+. .++||++.||.++|++++|+..+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~ 65 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS---VTAYNCGVCADNIKKYKEAADYF 65 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc---HHHHHHHHHHHHhhcHHHHHHHH
Confidence 4578999999999999999999999999998 654 68999999999999999999876
No 129
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.25 E-value=2.6e-06 Score=63.08 Aligned_cols=91 Identities=13% Similarity=0.091 Sum_probs=60.3
Q ss_pred HHhhcCCCcchhHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC---hhhHHHHHHHHh
Q 023871 185 RAERNSGVISNRVREIQM--QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPT---PEESSVASYNVA 259 (276)
Q Consensus 185 ~~~r~~G~i~~al~Eiq~--~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~---~~e~a~A~YN~A 259 (276)
..-...|++++++..+++ ..+.+.........-....|..++..|+|++|+..|++|+.+.++ ......+++|++
T Consensus 17 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 96 (164)
T 3ro3_A 17 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 96 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 334467888888666655 222222222222334567788888888888888888888866433 233366788888
Q ss_pred HHHHhcCChhHHHhhh
Q 023871 260 CCYSKLNQVPLLLALI 275 (276)
Q Consensus 260 cCyaKLgq~~eAI~aL 275 (276)
.||..+|++++|+..+
T Consensus 97 ~~~~~~~~~~~A~~~~ 112 (164)
T 3ro3_A 97 NTYTLLQDYEKAIDYH 112 (164)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHH
Confidence 8888888888887764
No 130
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.25 E-value=4.3e-06 Score=67.39 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
..++..|..++..|+|++|+..|++++.++|++. .+|++++.||.++|++++|+..+
T Consensus 140 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 140 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA---RGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHhCCHHHHHHHH
Confidence 3356788888889999999999999998888874 57888888888888888888765
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.25 E-value=4.1e-06 Score=59.86 Aligned_cols=84 Identities=21% Similarity=0.226 Sum_probs=65.9
Q ss_pred HHHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHH
Q 023871 184 IRAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY 262 (276)
Q Consensus 184 ~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCy 262 (276)
...-...|++++++..++. ..++... ...++..|..++..|+|++|+..|++++.+.|++. .++++++.||
T Consensus 16 ~~~~~~~~~~~~A~~~~~~-----~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~ 87 (125)
T 1na0_A 16 GNAYYKQGDYDEAIEYYQK-----ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA---EAWYNLGNAY 87 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHH-----HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH-----HHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH---HHHHHHHHHH
Confidence 3445578888888665554 2222221 23467889999999999999999999999999875 5899999999
Q ss_pred HhcCChhHHHhhh
Q 023871 263 SKLNQVPLLLALI 275 (276)
Q Consensus 263 aKLgq~~eAI~aL 275 (276)
.++|++++|+..+
T Consensus 88 ~~~~~~~~A~~~~ 100 (125)
T 1na0_A 88 YKQGDYDEAIEYY 100 (125)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHhcCHHHHHHHH
Confidence 9999999999875
No 132
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=98.24 E-value=6.3e-06 Score=61.90 Aligned_cols=79 Identities=22% Similarity=0.415 Sum_probs=57.2
Q ss_pred ceEEEEecC--cceeEEeeeC----------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHH
Q 023871 85 EEYEVEIEQ--PYGLKFAKGR----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMY 152 (276)
Q Consensus 85 ~~y~V~l~K--PLGl~f~e~~----------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~ 152 (276)
.+++|++.| +||+.+..+. +.+++|..|.|++.|++ | |++||+|+.+... .+=.. ..-+...
T Consensus 3 ~~~~v~l~~~~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~---~v~~~-~~~~~~~ 76 (95)
T 1mfg_A 3 MEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGY---SFINI-EHGQAVS 76 (95)
T ss_dssp EEEEEEEECSSSCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-T-CCTTCEEEEETTE---ECTTC-BHHHHHH
T ss_pred eEEEEEECCCCCCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-C-CCCCCEEEEECCE---EcCCC-CHHHHHH
Confidence 457777776 5888887643 34899999999999999 7 9999999998742 22111 1234555
Q ss_pred HhhcccCceEEEEeecC
Q 023871 153 TIRQRVGPLLMKMQKRY 169 (276)
Q Consensus 153 air~r~gpv~L~l~R~~ 169 (276)
.++....++.|.+.|..
T Consensus 77 ~~~~~~~~v~l~v~R~~ 93 (95)
T 1mfg_A 77 LLKTFQNTVELIIVREV 93 (95)
T ss_dssp HHHHCCSEEEEEEEEEC
T ss_pred HhhcCCCeEEEEEEeCC
Confidence 66655678899999864
No 133
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=98.24 E-value=2.7e-06 Score=63.20 Aligned_cols=80 Identities=19% Similarity=0.378 Sum_probs=57.0
Q ss_pred ceEEEEecC---cceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhccc-
Q 023871 85 EEYEVEIEQ---PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV- 158 (276)
Q Consensus 85 ~~y~V~l~K---PLGl~f~e~~--dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~- 158 (276)
++.+|+|.| .+|+.+..+. +.+++|..|.|+|.|+++|.+++||+|+.+... .+ .-....++...|+...
T Consensus 2 ~~~~v~l~~~~~g~G~~~~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~---~v-~~~~~~~~~~~l~~~~~ 77 (90)
T 2q9v_A 2 MEQDIFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGT---PV-IGKSHQLVVQLMQQAAK 77 (90)
T ss_dssp EEEEEEEECBTTBCCEEEEECSSTTSCEEEEEECTTSHHHHHCCCCTTCEEEEETTE---EC-TTSCHHHHHHHHHHHHH
T ss_pred CcEEEEEEECCCccCEEEEccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCE---EC-CCCCHHHHHHHHHhCCC
Confidence 345666654 4788887652 237999999999999999999999999998743 22 1123345566666543
Q ss_pred -CceEEEEeec
Q 023871 159 -GPLLMKMQKR 168 (276)
Q Consensus 159 -gpv~L~l~R~ 168 (276)
+++.|.+.|.
T Consensus 78 ~~~v~l~v~R~ 88 (90)
T 2q9v_A 78 QGHVNLTVRQT 88 (90)
T ss_dssp HTEEEEEEEEC
T ss_pred CCeEEEEEEec
Confidence 3799999884
No 134
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.24 E-value=6.5e-07 Score=80.82 Aligned_cols=80 Identities=14% Similarity=-0.012 Sum_probs=64.7
Q ss_pred hcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcC
Q 023871 188 RNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN 266 (276)
Q Consensus 188 r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLg 266 (276)
...|++++++..+ +++.++... ..-++..|..+++.|+|++|+..|+++|+++|++. .++++++.||.++|
T Consensus 36 ~~~g~~~~A~~~~-----~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g 107 (537)
T 3fp2_A 36 FTAKNFNEAIKYY-----QYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHS---KALLRRASANESLG 107 (537)
T ss_dssp HHTTCCC-CHHHH-----HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHH-----HHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchH---HHHHHHHHHHHHcC
Confidence 3788899885554 445454433 45567999999999999999999999999999985 58999999999999
Q ss_pred ChhHHHhhh
Q 023871 267 QVPLLLALI 275 (276)
Q Consensus 267 q~~eAI~aL 275 (276)
++++|+..+
T Consensus 108 ~~~~A~~~~ 116 (537)
T 3fp2_A 108 NFTDAMFDL 116 (537)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999999865
No 135
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=98.23 E-value=2.6e-06 Score=63.03 Aligned_cols=78 Identities=24% Similarity=0.462 Sum_probs=56.3
Q ss_pred eEEEEe--cCcceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCce
Q 023871 86 EYEVEI--EQPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL 161 (276)
Q Consensus 86 ~y~V~l--~KPLGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv 161 (276)
.+.|+| +.|+|+.+..+.+ .+++|..|.|++.|+++| |++||+|+++... .+-... +..+...++....++
T Consensus 4 ~~~v~l~~~~~~G~~l~~g~~~~~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~---~v~~~~-~~~~~~~~~~~g~~v 78 (88)
T 2uzc_A 4 NYSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQAN-VRIGDVVLSIDGI---NAQGMT-HLEAQNKIKGCTGSL 78 (88)
T ss_dssp EEEEEEESSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTCEEEEETTE---ECTTCC-HHHHHHHHHTCCSEE
T ss_pred EEEEEEcCCCcccEEEECcCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCE---ECCCCC-HHHHHHHHHhCCCeE
Confidence 345555 4567888876543 389999999999999999 9999999998642 222221 255666777556788
Q ss_pred EEEEeec
Q 023871 162 LMKMQKR 168 (276)
Q Consensus 162 ~L~l~R~ 168 (276)
.|.+.|.
T Consensus 79 ~l~v~R~ 85 (88)
T 2uzc_A 79 NMTLQRE 85 (88)
T ss_dssp EEEEECC
T ss_pred EEEEEeC
Confidence 9999884
No 136
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=98.23 E-value=2.7e-06 Score=72.30 Aligned_cols=81 Identities=19% Similarity=0.377 Sum_probs=62.8
Q ss_pred ccceEEEEecC---cceeEEeee--------CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHH
Q 023871 83 KYEEYEVEIEQ---PYGLKFAKG--------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTM 151 (276)
Q Consensus 83 ~~~~y~V~l~K---PLGl~f~e~--------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~ 151 (276)
..+.++|+|.| +||+.+... .++++||..|.+||.|+++|.|++||+|+.|... .|- -...-.+.
T Consensus 78 ~~~~~~v~l~k~~~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~---~v~-~~~~~~~~ 153 (170)
T 3egg_C 78 RLELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGT---SLV-GVTQSFAA 153 (170)
T ss_dssp TSEEEEEEEECBTTBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTE---ECT-TBCHHHHH
T ss_pred CceEEEEEEEeCCCeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCE---ECC-CCCHHHHH
Confidence 45678899875 899998872 2358999999999999999999999999998753 220 11234567
Q ss_pred HHhhcccCceEEEEee
Q 023871 152 YTIRQRVGPLLMKMQK 167 (276)
Q Consensus 152 ~air~r~gpv~L~l~R 167 (276)
..|+...+.|.|++.|
T Consensus 154 ~~l~~~g~~v~L~V~R 169 (170)
T 3egg_C 154 SVLRNTKGRVRFMIGR 169 (170)
T ss_dssp HHHHHCCSEEEEEEEE
T ss_pred HHHHcCCCEEEEEEEe
Confidence 7778767789999988
No 137
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.23 E-value=8.2e-06 Score=62.97 Aligned_cols=82 Identities=26% Similarity=0.429 Sum_probs=61.0
Q ss_pred cccceEEEEecC---cceeEEeee--------CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhH
Q 023871 82 EKYEEYEVEIEQ---PYGLKFAKG--------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRT 150 (276)
Q Consensus 82 ~~~~~y~V~l~K---PLGl~f~e~--------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~ 150 (276)
.+.+.+.|++.| .+|+.+..+ .+.+++|..|.+++.|+++| |++||+|+.+... .+-....+ ..
T Consensus 12 ~~~~~~~~~l~~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~---~v~~~~~~-~~ 86 (110)
T 1x5q_A 12 IEEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGV---ALQGAEHH-EA 86 (110)
T ss_dssp CCCEEEEEEEECSSSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTE---ECTTCCHH-HH
T ss_pred CCcceEEEEEecCCCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECCCcCHH-HH
Confidence 455788999987 688988754 34699999999999999999 9999999998753 23222222 33
Q ss_pred HHHhhcccCceEEEEeec
Q 023871 151 MYTIRQRVGPLLMKMQKR 168 (276)
Q Consensus 151 ~~air~r~gpv~L~l~R~ 168 (276)
+..++....++.|++.|.
T Consensus 87 ~~~~~~~g~~v~l~v~R~ 104 (110)
T 1x5q_A 87 VEALRGAGTAVQMRVWRE 104 (110)
T ss_dssp HHHHHSCCSEEEEEEEEC
T ss_pred HHHhhCCCCeEEEEEEEC
Confidence 445555567889999985
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.22 E-value=3.6e-06 Score=60.59 Aligned_cols=59 Identities=22% Similarity=0.220 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 214 qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
....++..|..++..|+|++|+..|++++.++|++. .++++++.||..+|++++|+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~a~~~~~~~~~~~A~~~~ 69 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA---VYFCNRAAAYSKLGNYAGAVQDC 69 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhhchHHHHHHH
Confidence 345567999999999999999999999999999885 68999999999999999999876
No 139
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.22 E-value=1.9e-06 Score=72.23 Aligned_cols=90 Identities=13% Similarity=0.175 Sum_probs=70.1
Q ss_pred HHhhcCCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh
Q 023871 185 RAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK 264 (276)
Q Consensus 185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK 264 (276)
..-...|++++++..++..--.... -....+.++..|..+++.|+|++|+..|+++|.+.|+++....++|+++.||.+
T Consensus 23 ~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~ 101 (261)
T 3qky_A 23 MEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYK 101 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHH
Confidence 3344789999998777762110000 000134467899999999999999999999999999887777899999999999
Q ss_pred --------cCChhHHHhhh
Q 023871 265 --------LNQVPLLLALI 275 (276)
Q Consensus 265 --------Lgq~~eAI~aL 275 (276)
+|++++|+..+
T Consensus 102 ~~~~~~~~~~~~~~A~~~~ 120 (261)
T 3qky_A 102 LSPPYELDQTDTRKAIEAF 120 (261)
T ss_dssp HCCCTTSCCHHHHHHHHHH
T ss_pred hcccccccchhHHHHHHHH
Confidence 99999999876
No 140
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.22 E-value=6.5e-07 Score=76.12 Aligned_cols=70 Identities=19% Similarity=0.236 Sum_probs=59.9
Q ss_pred HHHhhHHHHHHH-HHHHHHHHHHHHHcCCH----------HHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcC-----
Q 023871 203 QNYMKKKEQKER-REQDLREGLQLYRTGKY----------EVAREKFESVLGSKPTPEESSVASYNVACCYSKLN----- 266 (276)
Q Consensus 203 ~nYkk~Kelkkq-ae~~~~eGnaLfk~grY----------eEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLg----- 266 (276)
..|+++-++... .+.|++.|+.|.++++| ++||..|++||+++|++. .+|||++.+|..+|
T Consensus 23 ~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~---~A~~~LG~ay~~lg~l~P~ 99 (158)
T 1zu2_A 23 QDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD---EAVWCIGNAYTSFAFLTPD 99 (158)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcH---HHHHHHHHHHHHhcccCcc
Confidence 567777777776 45678899999888775 599999999999999996 68999999999985
Q ss_pred ------ChhHHHhhh
Q 023871 267 ------QVPLLLALI 275 (276)
Q Consensus 267 ------q~~eAI~aL 275 (276)
++++|++++
T Consensus 100 ~~~a~g~~~eA~~~~ 114 (158)
T 1zu2_A 100 ETEAKHNFDLATQFF 114 (158)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhhhccHHHHHHHH
Confidence 899999875
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.22 E-value=2.2e-06 Score=77.00 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=59.0
Q ss_pred HHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh------------hHHHHHHHHhHHHHhcCChhH
Q 023871 204 NYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE------------ESSVASYNVACCYSKLNQVPL 270 (276)
Q Consensus 204 nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~------------e~a~A~YN~AcCyaKLgq~~e 270 (276)
.|++.-+++.. ...++..|+.+++.|+|++|+..|++||.++|++. ....+|+|+|.||.++|++++
T Consensus 135 ~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~ 214 (336)
T 1p5q_A 135 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSA 214 (336)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 34444444443 45678999999999999999999999999999872 115789999999999999999
Q ss_pred HHhhh
Q 023871 271 LLALI 275 (276)
Q Consensus 271 AI~aL 275 (276)
|+..+
T Consensus 215 A~~~~ 219 (336)
T 1p5q_A 215 AIESC 219 (336)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 142
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.22 E-value=2.5e-06 Score=70.94 Aligned_cols=57 Identities=35% Similarity=0.405 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+.++..|..+++.|+|++|+..|++||+++|++. .+|+|++.||.++|++++|+..+
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~lg~~~~~~g~~~~A~~~~ 62 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDP---EALYWLARTQLKLGLVNPALENG 62 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHH
Confidence 3467889999999999999999999999999986 58999999999999999999876
No 143
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=98.21 E-value=5.2e-06 Score=61.03 Aligned_cols=77 Identities=10% Similarity=0.238 Sum_probs=54.4
Q ss_pred EEEEecC---cceeEEeeeCCC--CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc--cC
Q 023871 87 YEVEIEQ---PYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VG 159 (276)
Q Consensus 87 y~V~l~K---PLGl~f~e~~dG--gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r--~g 159 (276)
++|+|.| .+|+.+..+.++ +++|..|.|++.|+++|.+++||+|+.+-.. .+- ......+...|+.. ..
T Consensus 2 ~~v~l~k~~~g~G~~i~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~---~v~-~~~~~~~~~~l~~~~~g~ 77 (85)
T 2i04_A 2 IHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDT---CVL-GHTHAQVVKIFQSIPIGA 77 (85)
T ss_dssp EEEEEECBTTBSSEEEEECCSTTBCEEEEEECTTSHHHHHCCCCTTCEEEEETTE---ECT-TCCHHHHHHHHHTSCTTC
T ss_pred EEEEEEECCCCCCEEEEcccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCE---ECC-CCCHHHHHHHHHhCCCCC
Confidence 4566654 578888765443 7999999999999999999999999998643 221 01234555666653 45
Q ss_pred ceEEEEee
Q 023871 160 PLLMKMQK 167 (276)
Q Consensus 160 pv~L~l~R 167 (276)
++.|.+.|
T Consensus 78 ~v~l~v~R 85 (85)
T 2i04_A 78 SVDLELCR 85 (85)
T ss_dssp EEEEEEEC
T ss_pred eEEEEEEC
Confidence 78888765
No 144
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=1.8e-06 Score=66.02 Aligned_cols=83 Identities=16% Similarity=0.363 Sum_probs=61.6
Q ss_pred cccceEEEEecC--cceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc
Q 023871 82 EKYEEYEVEIEQ--PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR 157 (276)
Q Consensus 82 ~~~~~y~V~l~K--PLGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r 157 (276)
.....+.|++.+ ++|+.+..+.+ .+++|..|.|++.|+++|.|++||+|+.+-.. .+... +-.++..++..
T Consensus 8 ~~~~~~~v~~~~~~~~G~~~~gg~~~~~~v~V~~V~~~spA~~agGL~~GD~I~~ing~---~v~~~--~~~~~~~~~~~ 82 (100)
T 2edp_A 8 GSFQYVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGT---PLYGS--RQEALILIKGS 82 (100)
T ss_dssp CCCEEEEEECCSCSCCCCCEEEEGGGTEEEEECCCCTTSHHHHHTSCCTTCEEEEETTE---ECCSC--SHHHHHHHHTC
T ss_pred CCcEEEEEEECCCCCcCEEEeccCCCCCCeEEEEECCCCHHHHcCCCCCCCEEEEECCE---Eccch--HHHHHHHHHhC
Confidence 345678888864 68888876533 37999999999999999449999999998653 33221 44566777765
Q ss_pred cCceEEEEeecC
Q 023871 158 VGPLLMKMQKRY 169 (276)
Q Consensus 158 ~gpv~L~l~R~~ 169 (276)
..++.|.+.|.-
T Consensus 83 ~~~v~l~v~R~~ 94 (100)
T 2edp_A 83 FRILKLIVRRRN 94 (100)
T ss_dssp CSSCEEEEEECC
T ss_pred CCeEEEEEEeCC
Confidence 678899999864
No 145
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.21 E-value=2e-06 Score=75.01 Aligned_cols=83 Identities=10% Similarity=0.005 Sum_probs=68.2
Q ss_pred HHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871 185 RAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS 263 (276)
Q Consensus 185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya 263 (276)
..-...|++++++ ..|.++.++... ..-+++.|..+++.|+|++|+..|++||+++|++. .+++|+|.+|.
T Consensus 12 ~~~~~~g~~~~A~-----~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~ 83 (281)
T 2c2l_A 12 NRLFVGRKYPEAA-----ACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV---KAHFFLGQCQL 83 (281)
T ss_dssp HHHHHTTCHHHHH-----HHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH---HHHHHHHHHHH
T ss_pred HHHHHcCCHHHHH-----HHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHH
Confidence 3344778888884 455566665553 45578999999999999999999999999999985 68999999999
Q ss_pred hcCChhHHHhhh
Q 023871 264 KLNQVPLLLALI 275 (276)
Q Consensus 264 KLgq~~eAI~aL 275 (276)
.+|++++|+..+
T Consensus 84 ~~g~~~~A~~~~ 95 (281)
T 2c2l_A 84 EMESYDEAIANL 95 (281)
T ss_dssp HTTCHHHHHHHH
T ss_pred HcCCHHHHHHHH
Confidence 999999999876
No 146
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.21 E-value=3.6e-06 Score=73.40 Aligned_cols=57 Identities=26% Similarity=0.300 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+.++..|+.+++.|+|++|+..|++||.++|++. .+|+|+|.||.++|++++|+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~ 61 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA---VYYTNRALCYLKMQQPEQALADC 61 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH---HHHHHHHHHHHHhcCHHHHHHHH
Confidence 4567999999999999999999999999999985 68999999999999999999875
No 147
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.21 E-value=7e-06 Score=68.97 Aligned_cols=55 Identities=25% Similarity=0.433 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH-HHHHHHHhHHHHhcCChhHHHhh
Q 023871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEES-SVASYNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~-a~A~YN~AcCyaKLgq~~eAI~a 274 (276)
..|..+++.|+|++|+..|++++++.|++... ..+++++|.||.++|++++|+..
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 44555555555555555555555555554332 33445555555555555555544
No 148
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.21 E-value=1.4e-06 Score=72.07 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHH----------------HhHHHHhcCChhHHHhhh
Q 023871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYN----------------VACCYSKLNQVPLLLALI 275 (276)
Q Consensus 215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN----------------~AcCyaKLgq~~eAI~aL 275 (276)
.+.++.+|..+++.|+|++|+..|++++.++|++. .+|++ +|.||.++|++++|+..+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 77 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT---EMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFY 77 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH---HHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh---HHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 35678999999999999999999999999999986 46777 999999999999999876
No 149
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.21 E-value=1.8e-06 Score=87.45 Aligned_cols=70 Identities=16% Similarity=0.107 Sum_probs=61.4
Q ss_pred HHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 203 QNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 203 ~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
..|+++-+++.. .+.+++.|..+.++|+|++|+..|++||+++|++. .+|+|++.||..+++|++|++.+
T Consensus 98 ~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~---~a~~~L~~~l~~~g~~~~A~~~~ 168 (723)
T 4gyw_A 98 QCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFP---DAYCNLAHCLQIVCDWTDYDERM 168 (723)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH---HHHHHHHHHHHHTTCCTTHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---HHHhhhhhHHHhcccHHHHHHHH
Confidence 557777777665 35567999999999999999999999999999996 58999999999999999998865
No 150
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=98.20 E-value=5.3e-06 Score=66.40 Aligned_cols=79 Identities=19% Similarity=0.373 Sum_probs=59.8
Q ss_pred ceEEEEecC----cceeEEeee-----------CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceeccc--c
Q 023871 85 EEYEVEIEQ----PYGLKFAKG-----------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--Y 147 (276)
Q Consensus 85 ~~y~V~l~K----PLGl~f~e~-----------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~--~ 147 (276)
..++|++.| .+|+.+... .+.+++|..|.|+|.|+++|.|++||+|+++... +..+ +
T Consensus 24 ~p~~v~l~k~~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~------~v~~~~~ 97 (123)
T 2iwq_A 24 QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGM------DLRDASH 97 (123)
T ss_dssp CCEEEEECCCTTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTE------ECTTCCH
T ss_pred CCEEEEEEecCCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCE------ECCCCCH
Confidence 345666654 578887542 2358999999999999999999999999998753 2333 5
Q ss_pred hhHHHHhhcccCceEEEEeecC
Q 023871 148 GRTMYTIRQRVGPLLMKMQKRY 169 (276)
Q Consensus 148 g~~~~air~r~gpv~L~l~R~~ 169 (276)
.++...|+...+++.|.+.|..
T Consensus 98 ~~~~~~l~~~~~~v~l~v~r~~ 119 (123)
T 2iwq_A 98 EQAVEAIRKAGNPVVFMVQSII 119 (123)
T ss_dssp HHHHHHHHHCCSSEEEEEECCC
T ss_pred HHHHHHHHcCCCeEEEEEEECC
Confidence 5677788866779999998854
No 151
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=98.20 E-value=4.3e-06 Score=62.35 Aligned_cols=76 Identities=17% Similarity=0.394 Sum_probs=56.9
Q ss_pred EEEEec--CcceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccch--hHHHHhhcccCc
Q 023871 87 YEVEIE--QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYG--RTMYTIRQRVGP 160 (276)
Q Consensus 87 y~V~l~--KPLGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g--~~~~air~r~gp 160 (276)
+.|++. .|+|+.+..+.+ .+++|..|.|++.|+++| |++||+|+.+... . ..++. .....++....+
T Consensus 5 ~~v~~~~~~~~G~~l~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~---~---v~~~~~~~~~~~l~~~g~~ 77 (91)
T 2pkt_A 5 QQIDLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALAN-LCIGDVITAIDGE---N---TSNMTHLEAQNRIKGCTDN 77 (91)
T ss_dssp EEEEEESSSCCSEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTCEEEEETTE---E---CTTCCHHHHHHHHHTCSSE
T ss_pred EEEEECCCCCCCEEEEccCCCCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCE---E---CCCCCHHHHHHHHHcCCCe
Confidence 344444 578888877644 489999999999999999 9999999998753 2 23333 556667765678
Q ss_pred eEEEEeecC
Q 023871 161 LLMKMQKRY 169 (276)
Q Consensus 161 v~L~l~R~~ 169 (276)
+.|.+.|.-
T Consensus 78 v~l~v~R~g 86 (91)
T 2pkt_A 78 LTLTVARSE 86 (91)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEECC
Confidence 899999853
No 152
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.20 E-value=1.9e-06 Score=65.97 Aligned_cols=85 Identities=20% Similarity=0.306 Sum_probs=62.5
Q ss_pred cccccceEEEEecCc---ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc
Q 023871 80 QEEKYEEYEVEIEQP---YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ 156 (276)
Q Consensus 80 ~~~~~~~y~V~l~KP---LGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~ 156 (276)
.....+++.|+|.|. +|+.+.. +.+++|..|.+++.|+++| |++||+|+.+-.. .+- ...+..+...|+.
T Consensus 10 ~~~~~~~~~v~l~~~~~g~G~~~~~--~~~~~V~~V~~~spA~~aG-L~~GD~I~~vng~---~v~-~~~~~~~~~~l~~ 82 (100)
T 1whd_A 10 DPENGEKLQITIRRGKDGFGFTICC--DSPVRVQAVDSGGPAERAG-LQQLDTVLQLNER---PVE-HWKCVELAHEIRS 82 (100)
T ss_dssp SCCCCEEEEEEEECCSSSSSCBCCC--SSSCBCCBCCTTSHHHHHT-CCSSCEEEEETTE---ECT-TCCHHHHHHHHHH
T ss_pred CccccceEEEEEECCCCeeeEEEeC--CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECC-CCCHHHHHHHHHc
Confidence 445677888999775 6666654 3689999999999999999 9999999998753 111 1123456667776
Q ss_pred ccCceEEEEeecCCC
Q 023871 157 RVGPLLMKMQKRYGK 171 (276)
Q Consensus 157 r~gpv~L~l~R~~~~ 171 (276)
..+.+.|.+.|..++
T Consensus 83 ~~~~v~l~v~R~~~~ 97 (100)
T 1whd_A 83 CPSEIILLVWRVSGP 97 (100)
T ss_dssp CSSEEEEEEEECCSS
T ss_pred CCCeEEEEEEECCCC
Confidence 567799999987654
No 153
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=98.20 E-value=4.7e-06 Score=63.62 Aligned_cols=83 Identities=22% Similarity=0.403 Sum_probs=59.6
Q ss_pred ccccceEEEEecC--cceeEEeeeC----------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccch
Q 023871 81 EEKYEEYEVEIEQ--PYGLKFAKGR----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYG 148 (276)
Q Consensus 81 ~~~~~~y~V~l~K--PLGl~f~e~~----------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g 148 (276)
+...+.+.|++.| ++|+.+..+. +.+++|..|.|++.|++ | |++||+|+.+... .+=. ...-
T Consensus 7 ~~~~~~~~v~l~~~~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~---~v~~-~~~~ 80 (103)
T 1n7t_A 7 ELAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGY---SFIN-IEHG 80 (103)
T ss_dssp SSSCCCEEEEEECSSCCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-S-CCTTCEEEEETTE---ECSS-CCHH
T ss_pred CcccEEEEEEEccCCCccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-C-CCCCCEEEEECCE---ECCC-CCHH
Confidence 3455667777766 5778887643 44999999999999999 7 9999999998742 2211 1233
Q ss_pred hHHHHhhcccCceEEEEeecC
Q 023871 149 RTMYTIRQRVGPLLMKMQKRY 169 (276)
Q Consensus 149 ~~~~air~r~gpv~L~l~R~~ 169 (276)
.+...++....++.|.+.|..
T Consensus 81 ~~~~~~~~~g~~v~l~v~R~~ 101 (103)
T 1n7t_A 81 QAVSLLKTFQNTVELIIVREV 101 (103)
T ss_dssp HHHHHHHHCCSEEEEEEECCC
T ss_pred HHHHHhhcCCCeEEEEEEecC
Confidence 556666655677899999854
No 154
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=98.19 E-value=4.8e-06 Score=68.11 Aligned_cols=83 Identities=20% Similarity=0.357 Sum_probs=61.4
Q ss_pred cccccceEEEEecC-------cceeEEeeeC--------------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccC
Q 023871 80 QEEKYEEYEVEIEQ-------PYGLKFAKGR--------------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFG 138 (276)
Q Consensus 80 ~~~~~~~y~V~l~K-------PLGl~f~e~~--------------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fG 138 (276)
..+....+.|+|.| +||+.+..+. +.+++|..|.|++.|+++| |++||+|+.+...
T Consensus 18 ~~~~~~~~~v~l~~~~~~~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~-- 94 (139)
T 2vz5_A 18 LYFQSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGW-- 94 (139)
T ss_dssp ----CEEEEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHT-CCTTCEEEEETTE--
T ss_pred ccCCCceEEEEEEEcCCCCcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCE--
Confidence 33444667888888 7999986532 3599999999999999999 9999999998752
Q ss_pred Ccceecc--cchhHHHHhhccc-CceEEEEeecC
Q 023871 139 TEIWPAA--EYGRTMYTIRQRV-GPLLMKMQKRY 169 (276)
Q Consensus 139 devw~a~--~~g~~~~air~r~-gpv~L~l~R~~ 169 (276)
+.. .+..+...|+... .++.|.+.|.-
T Consensus 95 ----~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g 124 (139)
T 2vz5_A 95 ----DMTMVTHDQARKRLTKRSEEVVRLLVTRQS 124 (139)
T ss_dssp ----ECTTCCHHHHHHHHCCTTCSEEEEEEEECC
T ss_pred ----EcCCCCHHHHHHHHHhCCCCEEEEEEEECC
Confidence 222 3556777777655 46899999854
No 155
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=98.19 E-value=1e-05 Score=60.90 Aligned_cols=78 Identities=17% Similarity=0.322 Sum_probs=57.4
Q ss_pred ceEEEEecC---cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCce
Q 023871 85 EEYEVEIEQ---PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL 161 (276)
Q Consensus 85 ~~y~V~l~K---PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv 161 (276)
....|+|.| ++|+.+.. +.+++|..|.+++.|+++| |++||+|+.+... .+-....+ +++..++. ..++
T Consensus 8 ~~r~v~l~~~~~~~G~~l~~--~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~---~v~~~~~~-~~~~~~~~-g~~v 79 (93)
T 2dls_A 8 VQRCVIIQKDQHGFGFTVSG--DRIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGT---MVTNSSHL-EVVKLIKS-GAYV 79 (93)
T ss_dssp CEEEEEEECSSSSCCEEEEC--SSSCEEEEECSSSTTTTTT-CCSSCEEEEETTE---ECSSSCHH-HHHHHHTS-SSEE
T ss_pred CCEEEEEEeCCCceeEEEeC--CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECCCCCHH-HHHHhhcC-CCEE
Confidence 345666665 46777653 5689999999999999999 9999999998753 33333333 56666764 7789
Q ss_pred EEEEeecCC
Q 023871 162 LMKMQKRYG 170 (276)
Q Consensus 162 ~L~l~R~~~ 170 (276)
.|.+.|...
T Consensus 80 ~l~v~R~~~ 88 (93)
T 2dls_A 80 ALTLLGSSS 88 (93)
T ss_dssp EEEEECCCC
T ss_pred EEEEEECCC
Confidence 999999654
No 156
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=98.19 E-value=6e-06 Score=65.57 Aligned_cols=82 Identities=15% Similarity=0.339 Sum_probs=60.7
Q ss_pred ccceEEEEecC---cceeEEeeeCC-----CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHh
Q 023871 83 KYEEYEVEIEQ---PYGLKFAKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI 154 (276)
Q Consensus 83 ~~~~y~V~l~K---PLGl~f~e~~d-----Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~ai 154 (276)
..+.+.|++.+ ++|+.+....+ .+++|..|.|++.|+++|.|++||+|+.+... .+-. ..+..+...|
T Consensus 28 ~~~~~~v~l~~~~~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~---~v~~-~~~~~~~~~l 103 (121)
T 2kom_A 28 IGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGV---DLVG-KSQEEVVSLL 103 (121)
T ss_dssp SCEEEEEEEECCTTCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTE---ECTT-SCHHHHHHHH
T ss_pred CCeEEEEEEEcCCCcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCE---EcCC-CCHHHHHHHH
Confidence 45778888876 47888876643 58999999999999999999999999998753 2211 1134566667
Q ss_pred hcc--cCceEEEEeec
Q 023871 155 RQR--VGPLLMKMQKR 168 (276)
Q Consensus 155 r~r--~gpv~L~l~R~ 168 (276)
+.. ..++.|++.|.
T Consensus 104 ~~~~~g~~v~l~v~R~ 119 (121)
T 2kom_A 104 RSTKMEGTVSLLVFRQ 119 (121)
T ss_dssp HHCCSSCEEEEEEEEC
T ss_pred hcCCCCCEEEEEEEeC
Confidence 753 45789999884
No 157
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.18 E-value=2.5e-06 Score=80.96 Aligned_cols=79 Identities=15% Similarity=0.034 Sum_probs=65.4
Q ss_pred cCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCC
Q 023871 189 NSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ 267 (276)
Q Consensus 189 ~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq 267 (276)
..|++++|+ ..|+++.++... ...+...|..++++|+|++|+..|++||+++|++. .+|+|+|.||.++|+
T Consensus 18 ~~g~~~~A~-----~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 18 KAKDYENAI-----KFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI---KGYYRRAASNMALGK 89 (477)
T ss_dssp TTTCHHHHH-----HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH---HHHHHHHHHHHHHTC
T ss_pred HhCCHHHHH-----HHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCC
Confidence 456777774 456666666554 45577999999999999999999999999999985 689999999999999
Q ss_pred hhHHHhhh
Q 023871 268 VPLLLALI 275 (276)
Q Consensus 268 ~~eAI~aL 275 (276)
+++|++.+
T Consensus 90 ~~eA~~~~ 97 (477)
T 1wao_1 90 FRAALRDY 97 (477)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999876
No 158
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.18 E-value=5.7e-06 Score=67.16 Aligned_cols=87 Identities=14% Similarity=0.043 Sum_probs=67.8
Q ss_pred cCCCcchhHHHHHH--HHHhhHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-----CChhhHHHHHHHHh
Q 023871 189 NSGVISNRVREIQM--QNYMKKKE--QKERREQDLREGLQLYRTGKYEVAREKFESVLGSK-----PTPEESSVASYNVA 259 (276)
Q Consensus 189 ~~G~i~~al~Eiq~--~nYkk~Ke--lkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~-----P~~~e~a~A~YN~A 259 (276)
..|++++++..+++ ..+++... -......+...|..++..|+|++|+..|++|+++. ++++....+++|++
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 46888888777766 33333321 12334556799999999999999999999999875 55566678999999
Q ss_pred HHHHhcCChhHHHhhh
Q 023871 260 CCYSKLNQVPLLLALI 275 (276)
Q Consensus 260 cCyaKLgq~~eAI~aL 275 (276)
.||..+|++++|++.+
T Consensus 93 ~~~~~~g~~~~A~~~~ 108 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLC 108 (283)
T ss_dssp HHHHTTTCHHHHHHHH
T ss_pred HHHHHhccHHHHHHHH
Confidence 9999999999999875
No 159
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=98.18 E-value=3e-06 Score=62.17 Aligned_cols=78 Identities=23% Similarity=0.400 Sum_probs=56.0
Q ss_pred eEEEEecCc---ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceE
Q 023871 86 EYEVEIEQP---YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL 162 (276)
Q Consensus 86 ~y~V~l~KP---LGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~ 162 (276)
..+|+|.|. +|+.+.. +.+++|..|.+++.|+++| |++||+|+.+... .+-... +..++..++...+++.
T Consensus 3 ~r~v~l~~~~~g~G~~~~~--~~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~---~v~~~~-~~~~~~~l~~~~~~v~ 75 (83)
T 2kv8_A 3 VRSVEVARGRAGYGFTLSG--QAPCVLSCVMRGSPADFVG-LRAGDQILAVNEI---NVKKAS-HEDVVKLIGKCSGVLH 75 (83)
T ss_dssp EEEEEECCCSSCCSCBCCC--SSSCBCCBCCTTSTTTTTT-CCTTCEEEEETTE---ECSSCC-HHHHHHHHTTCSSCEE
T ss_pred cEEEEEEeCCCcccEEEEc--CCCeEEEEeCCCChHHHcC-CCCCCEEEEECCE---ECCCCC-HHHHHHHHHhCCCeEE
Confidence 356677654 4555433 4479999999999999999 9999999998743 332221 3566777776567899
Q ss_pred EEEeecCC
Q 023871 163 MKMQKRYG 170 (276)
Q Consensus 163 L~l~R~~~ 170 (276)
|.+.|..|
T Consensus 76 l~v~R~~g 83 (83)
T 2kv8_A 76 MVIAEGVG 83 (83)
T ss_dssp EEEECCCC
T ss_pred EEEEcCCC
Confidence 99999754
No 160
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.17 E-value=2.1e-06 Score=79.95 Aligned_cols=55 Identities=7% Similarity=-0.106 Sum_probs=32.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
|+..|..+..+|+|++|+..|++||+++|++. .+|+|++.||.++|++++|+..+
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~---~a~~~lg~~~~~~g~~~eAl~~~ 223 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNY---HAWQHRQWVIQEFKLWDNELQYV 223 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCCTTHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCccCH---HHHHHHHHHHHHcCChHHHHHHH
Confidence 45555555555555555555555555555553 45666666666666666666543
No 161
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=98.17 E-value=3.3e-06 Score=67.56 Aligned_cols=80 Identities=21% Similarity=0.414 Sum_probs=59.2
Q ss_pred ceEEEEecCc-----ceeEEeeeC-----------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccch
Q 023871 85 EEYEVEIEQP-----YGLKFAKGR-----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYG 148 (276)
Q Consensus 85 ~~y~V~l~KP-----LGl~f~e~~-----------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g 148 (276)
+...|+|.|. ||+.+.... +++++|..|.++|.|+++|.+++||+|+.+... .+ ....+.
T Consensus 29 ~~r~v~l~k~~~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~---~v-~~~~~~ 104 (128)
T 1nf3_C 29 THRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGI---EV-SGKSLD 104 (128)
T ss_dssp TCEEEEECCSSTTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTE---ES-TTCCHH
T ss_pred ccEEEEEEECCCCCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCE---EC-CCCCHH
Confidence 3456677664 888887542 248999999999999999999999999998742 33 112445
Q ss_pred hHHHHhhcccCceEEEEeec
Q 023871 149 RTMYTIRQRVGPLLMKMQKR 168 (276)
Q Consensus 149 ~~~~air~r~gpv~L~l~R~ 168 (276)
.+...|+...+.+.|.+.|.
T Consensus 105 ~~~~~l~~~~~~v~l~v~r~ 124 (128)
T 1nf3_C 105 QVTDMMIANSRNLIITVRPA 124 (128)
T ss_dssp HHHHHHHHTTTSEEEEEECC
T ss_pred HHHHHHHcCCCeEEEEEEEC
Confidence 56677776667899999874
No 162
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.17 E-value=9.6e-06 Score=66.72 Aligned_cols=56 Identities=14% Similarity=0.202 Sum_probs=45.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
++..|..+...|+|++|+..|+++++++|++. .+|++++.||.++|++++|+..++
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~ 132 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL---DMYGQIGSYFYNKGNFPLAIQYME 132 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT---HHHHHHHHHHHHTTCHHHHHHHHG
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHccCHHHHHHHHH
Confidence 56778888888888888888888888888875 578888888888888888887653
No 163
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=98.17 E-value=8.5e-06 Score=65.94 Aligned_cols=81 Identities=17% Similarity=0.313 Sum_probs=59.3
Q ss_pred EEEEecC----cceeEEeeeCCC--------------CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccch
Q 023871 87 YEVEIEQ----PYGLKFAKGRDG--------------GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYG 148 (276)
Q Consensus 87 y~V~l~K----PLGl~f~e~~dG--------------gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g 148 (276)
..|+|.| ++|+.+..+.+. |++|..|.+||.|+++| |++||+|+.+... .+- -....
T Consensus 29 r~v~l~r~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~---~v~-~~~~~ 103 (132)
T 3l4f_D 29 KTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQ---NVV-KVGHR 103 (132)
T ss_dssp CEEEEECCTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGT-CCTTCEEEEESSS---BCT-TSCHH
T ss_pred EEEEEEECCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECC-CCCHH
Confidence 4666665 688888877542 69999999999999999 9999999998742 221 11234
Q ss_pred hHHHHhhcccCceEEEEeecCCCc
Q 023871 149 RTMYTIRQRVGPLLMKMQKRYGKM 172 (276)
Q Consensus 149 ~~~~air~r~gpv~L~l~R~~~~~ 172 (276)
++...|+.....+.|++.|...+.
T Consensus 104 ~~~~~l~~~g~~v~l~v~~~~~~~ 127 (132)
T 3l4f_D 104 QVVNMIRQGGNTLMVKVVMVTRHP 127 (132)
T ss_dssp HHHHHHHHTTTEEEEEEECCCC--
T ss_pred HHHHHHHcCCCEEEEEEEECCCCC
Confidence 667777776678899988865544
No 164
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.16 E-value=2.1e-06 Score=65.79 Aligned_cols=81 Identities=22% Similarity=0.365 Sum_probs=59.4
Q ss_pred ceEEEEec--CcceeEEeeeCCC--CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCc
Q 023871 85 EEYEVEIE--QPYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP 160 (276)
Q Consensus 85 ~~y~V~l~--KPLGl~f~e~~dG--gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gp 160 (276)
++++|+|. .++|+.+..+.+. +++|..|.+++.|+++| |++||+|+.+... .+... ..-..+..++....+
T Consensus 5 ~~~~v~l~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aG-L~~GD~I~~ing~---~v~~~-~~~~~~~~~~~~g~~ 79 (103)
T 1wf7_A 5 SSGSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH-VRIGDVVLSIDGI---SAQGM-THLEAQNKIKACTGS 79 (103)
T ss_dssp CCEEEEEESSSCCSCCEEEETTTTEEEEECCCCTTCHHHHTT-CCTTCBEEEETTE---ECSSC-CHHHHHHHHHHCSSE
T ss_pred CEEEEEEeCCCccCEEEeccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECCCC-CHHHHHHHHHcCCCe
Confidence 55777776 6788888776543 69999999999999999 9999999998743 33222 223445566654567
Q ss_pred eEEEEeecCC
Q 023871 161 LLMKMQKRYG 170 (276)
Q Consensus 161 v~L~l~R~~~ 170 (276)
+.|.+.|...
T Consensus 80 v~l~v~R~g~ 89 (103)
T 1wf7_A 80 LNMTLQRASA 89 (103)
T ss_dssp EEEEECCCSC
T ss_pred EEEEEEeCCC
Confidence 8999988543
No 165
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.16 E-value=2.5e-06 Score=65.71 Aligned_cols=84 Identities=21% Similarity=0.402 Sum_probs=63.1
Q ss_pred cccceEEEEecC---cceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc
Q 023871 82 EKYEEYEVEIEQ---PYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR 157 (276)
Q Consensus 82 ~~~~~y~V~l~K---PLGl~f~e~~d-Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r 157 (276)
...+...|+|.| ++|+.+....+ .+++|..|.+++.|+++|.|++||+|+++-.. .+-.. ....+...++..
T Consensus 12 ~~~~~~~v~l~k~~~glG~~l~~~~~~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~---~v~~~-~~~~~~~~~~~~ 87 (113)
T 1um7_A 12 DAREPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGV---NLRNA-THEQAAAALKRA 87 (113)
T ss_dssp CCCSEEEEEEECCSSCSSBCCBCCSTTCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSC---BCTTC-CHHHHHHHHHSC
T ss_pred CCCceEEEEEEECCCcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECCCC-CHHHHHHHHHhC
Confidence 345678899987 68898877654 59999999999999999989999999998753 22221 123455566655
Q ss_pred cCceEEEEeecC
Q 023871 158 VGPLLMKMQKRY 169 (276)
Q Consensus 158 ~gpv~L~l~R~~ 169 (276)
..++.|.+.|..
T Consensus 88 ~~~v~l~v~r~~ 99 (113)
T 1um7_A 88 GQSVTIVAQYRP 99 (113)
T ss_dssp CSEEEEEEECCH
T ss_pred CCcEEEEEEECc
Confidence 677899998854
No 166
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=98.16 E-value=7.6e-06 Score=65.58 Aligned_cols=70 Identities=21% Similarity=0.416 Sum_probs=54.7
Q ss_pred cCcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccc--hhHHHHhhc--ccCceEEEEee
Q 023871 92 EQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY--GRTMYTIRQ--RVGPLLMKMQK 167 (276)
Q Consensus 92 ~KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~--g~~~~air~--r~gpv~L~l~R 167 (276)
..+||+.+..+.+++++|..|.|++.|+++| |++||+|+++... . ...+ ..+..+|.. ...++.|.++|
T Consensus 38 ~~~lG~~l~~~~~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~---~---v~~~~~~~~~~~l~~~~~g~~v~l~v~R 110 (124)
T 3tsv_A 38 GDSVGLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNV---D---FTNIIREEAVLFLLDLPKGEEVTILAQK 110 (124)
T ss_dssp SSCCCEEEEECTTSCEEEEEECTTCHHHHTT-CCTTEEEEEETTE---E---CSSCCHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred CCceeEEEecCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---E---CCCCCHHHHHHHHHhcCCCCEEEEEEEE
Confidence 4589999988778899999999999999999 9999999998643 2 2233 455565663 34578999988
Q ss_pred c
Q 023871 168 R 168 (276)
Q Consensus 168 ~ 168 (276)
.
T Consensus 111 ~ 111 (124)
T 3tsv_A 111 K 111 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 167
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.16 E-value=4.5e-06 Score=65.26 Aligned_cols=80 Identities=23% Similarity=0.457 Sum_probs=57.4
Q ss_pred EEEecC---cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEE
Q 023871 88 EVEIEQ---PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMK 164 (276)
Q Consensus 88 ~V~l~K---PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~ 164 (276)
.|+|.| ++|+.+....+++++|..|.+++.|+++| |++||+|+.+... .+-....+- ....++....++.|.
T Consensus 22 ~v~l~~~~~~lG~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~Il~vng~---~v~~~~~~~-~~~~~~~~g~~v~l~ 96 (117)
T 1uit_A 22 HVKVQKGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGI---NLRSATEQQ-ARLIIGQQCDTITIL 96 (117)
T ss_dssp EEEEECSSCCCCEEEEECTTSCEEEEEECTTSHHHHHT-CCTTCEECEETTE---ETTTCCHHH-HHHHTTSCCSEEEEE
T ss_pred EEEEEeCCCCccEEEEccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECCCCCHHH-HHHHHHcCCCeEEEE
Confidence 466655 79999988778899999999999999999 9999999998743 332222221 222334445678999
Q ss_pred EeecCCCc
Q 023871 165 MQKRYGKM 172 (276)
Q Consensus 165 l~R~~~~~ 172 (276)
+.|....+
T Consensus 97 v~r~~~~~ 104 (117)
T 1uit_A 97 AQYNPHVH 104 (117)
T ss_dssp ECCCSCCC
T ss_pred EEECCchh
Confidence 99865443
No 168
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=98.16 E-value=6.4e-06 Score=61.24 Aligned_cols=78 Identities=19% Similarity=0.368 Sum_probs=57.4
Q ss_pred EEEec---CcceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEE
Q 023871 88 EVEIE---QPYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLM 163 (276)
Q Consensus 88 ~V~l~---KPLGl~f~e~~d-Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L 163 (276)
.|+|. .++|+.+..+.+ .+++|..|.+++.|+++| |++||+|+.+... .+-. .....+...|+...+.+.+
T Consensus 6 ~v~l~r~~~g~G~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~---~v~~-~~~~~~~~~l~~~~~~~~~ 80 (91)
T 1g9o_A 6 LCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGE---NVEK-ETHQQVVSRIRAALNAVRL 80 (91)
T ss_dssp EEEEECBTTBCCEEEEECTTCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTE---ECTT-CCHHHHHHHHHTCSSEEEE
T ss_pred EEEEEeCCCcccEEEEecCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCE---ECCC-CCHHHHHHHHHcCCCcEEE
Confidence 44454 468899877654 599999999999999999 9999999998753 2211 1244677778876788877
Q ss_pred EEeecCC
Q 023871 164 KMQKRYG 170 (276)
Q Consensus 164 ~l~R~~~ 170 (276)
.+.|+.+
T Consensus 81 ~~~~r~~ 87 (91)
T 1g9o_A 81 LVVDPET 87 (91)
T ss_dssp EEECCCC
T ss_pred EEEcCCc
Confidence 7666554
No 169
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=98.15 E-value=1.2e-05 Score=61.63 Aligned_cols=82 Identities=18% Similarity=0.332 Sum_probs=57.6
Q ss_pred cccceEEEEecCc----ceeEEeeeCC--------CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchh
Q 023871 82 EKYEEYEVEIEQP----YGLKFAKGRD--------GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGR 149 (276)
Q Consensus 82 ~~~~~y~V~l~KP----LGl~f~e~~d--------Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~ 149 (276)
+.++.++|+|.|. +|+.+..+.+ .+++|..|.|++.|+ +| |++||+|+++... .+-....+ .
T Consensus 4 ~~~~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-ag-l~~GD~I~~vng~---~v~~~~~~-~ 77 (107)
T 2h2b_A 4 MIWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQ-LQENDRVAMVNGV---SMDNVEHA-F 77 (107)
T ss_dssp CCEEEEEEEEECBTTTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TT-BCTTCEEEEETTE---ECTTCCHH-H
T ss_pred ccceeEEEEEEeCCCCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hC-CCCCCEEEEECCE---ECCCccHH-H
Confidence 4457788888875 7888886543 499999999999999 77 9999999998743 22222222 2
Q ss_pred HHHHhhcccCceEEEEeecC
Q 023871 150 TMYTIRQRVGPLLMKMQKRY 169 (276)
Q Consensus 150 ~~~air~r~gpv~L~l~R~~ 169 (276)
.+..++....++.|.+.|.-
T Consensus 78 ~~~~~~~~g~~v~l~v~R~~ 97 (107)
T 2h2b_A 78 AVQQLRKSGKNAKITIRRKK 97 (107)
T ss_dssp HHHHHHTCCSEEEEEEEEES
T ss_pred HHHHhhCCCCEEEEEEEECC
Confidence 22233434567899998853
No 170
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.14 E-value=1.3e-05 Score=59.21 Aligned_cols=91 Identities=12% Similarity=0.023 Sum_probs=65.9
Q ss_pred HHhhcCCCcchhHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC---ChhhHHHHHHHHh
Q 023871 185 RAERNSGVISNRVREIQM--QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKP---TPEESSVASYNVA 259 (276)
Q Consensus 185 ~~~r~~G~i~~al~Eiq~--~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P---~~~e~a~A~YN~A 259 (276)
..-...|++++++..++. ..+.+.........-....|..++..|+|++|+..|++++++.+ +......++++++
T Consensus 57 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 136 (164)
T 3ro3_A 57 NAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLG 136 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHH
Confidence 344477888888666655 11222111122244567889999999999999999999997643 3344478899999
Q ss_pred HHHHhcCChhHHHhhh
Q 023871 260 CCYSKLNQVPLLLALI 275 (276)
Q Consensus 260 cCyaKLgq~~eAI~aL 275 (276)
.||..+|++++|++.+
T Consensus 137 ~~~~~~g~~~~A~~~~ 152 (164)
T 3ro3_A 137 NAYTALGNHDQAMHFA 152 (164)
T ss_dssp HHHHHHTCHHHHHHHH
T ss_pred HHHHHccCHHHHHHHH
Confidence 9999999999999876
No 171
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.14 E-value=4.8e-06 Score=68.22 Aligned_cols=84 Identities=19% Similarity=0.112 Sum_probs=65.7
Q ss_pred HHHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHH
Q 023871 184 IRAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY 262 (276)
Q Consensus 184 ~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCy 262 (276)
...-...|++++++..++. +.++... ..-++..|..++..|+|++|+..|++|+.++|++. .+|++++.||
T Consensus 50 ~~~~~~~~~~~~A~~~~~~-----al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~ 121 (275)
T 1xnf_A 50 GVLYDSLGLRALARNDFSQ-----ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---YAHLNRGIAL 121 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHH-----HHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---HHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHH-----HHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc---HHHHHHHHHH
Confidence 3445577888888655544 3333322 34467889999999999999999999999999875 6899999999
Q ss_pred HhcCChhHHHhhh
Q 023871 263 SKLNQVPLLLALI 275 (276)
Q Consensus 263 aKLgq~~eAI~aL 275 (276)
.++|++++|+..+
T Consensus 122 ~~~g~~~~A~~~~ 134 (275)
T 1xnf_A 122 YYGGRDKLAQDDL 134 (275)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHhccHHHHHHHH
Confidence 9999999999875
No 172
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.14 E-value=5.3e-06 Score=65.87 Aligned_cols=83 Identities=20% Similarity=0.336 Sum_probs=61.2
Q ss_pred ccceEEEEecC-----cceeEEeeeCC----CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHH
Q 023871 83 KYEEYEVEIEQ-----PYGLKFAKGRD----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYT 153 (276)
Q Consensus 83 ~~~~y~V~l~K-----PLGl~f~e~~d----Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~a 153 (276)
+.+..+|++.| .||+.+....+ ++++|..|.+++.|+++|.|++||+|+.+... .| ..+..+..+
T Consensus 17 ~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~---~v---~~~~~~~~~ 90 (124)
T 1wh1_A 17 ELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGI---EV---QNREEAVAL 90 (124)
T ss_dssp SCEECCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSC---BC---CSHHHHHHH
T ss_pred cceEEEEEEEecCCCCcccEEEEecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---EC---CCHHHHHHH
Confidence 33444445433 58999987653 79999999999999999989999999998743 33 345566677
Q ss_pred hhcc-cCceEEEEeecCCC
Q 023871 154 IRQR-VGPLLMKMQKRYGK 171 (276)
Q Consensus 154 ir~r-~gpv~L~l~R~~~~ 171 (276)
|+.. ..++.|.+.|.-..
T Consensus 91 l~~~~g~~v~l~v~R~g~~ 109 (124)
T 1wh1_A 91 LTSEENKNFSLLIARPELQ 109 (124)
T ss_dssp HTCSSCCSCCEEEEECSSC
T ss_pred HHhCCCCEEEEEEEECCEE
Confidence 7764 35789999986544
No 173
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.14 E-value=1.4e-06 Score=66.12 Aligned_cols=85 Identities=19% Similarity=0.409 Sum_probs=62.7
Q ss_pred ccceEEEEecC---cceeEEeeeCCC--CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc
Q 023871 83 KYEEYEVEIEQ---PYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR 157 (276)
Q Consensus 83 ~~~~y~V~l~K---PLGl~f~e~~dG--gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r 157 (276)
..+.+.|++.| .+|+.+..+.+. +++|..|.+++.|+++|.|++||+|+.+... .+-.. .+..++..++..
T Consensus 9 ~~~~~~v~l~~~~~g~G~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~---~v~~~-~~~~~~~~~~~~ 84 (103)
T 1wfv_A 9 DFDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGE---STRDM-THARAIELIKSG 84 (103)
T ss_dssp CSCCEECCEECCTTSSSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTE---ECSSC-CHHHHHHHHHHH
T ss_pred CceEEEEEEecCCCcCCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCE---ECCCC-CHHHHHHHHHcC
Confidence 34667888865 588988877553 8999999999999999999999999998753 22211 134556666644
Q ss_pred cCceEEEEeecCCC
Q 023871 158 VGPLLMKMQKRYGK 171 (276)
Q Consensus 158 ~gpv~L~l~R~~~~ 171 (276)
..++.|.+.|....
T Consensus 85 g~~v~l~v~R~~~~ 98 (103)
T 1wfv_A 85 GRRVRLLLKRGTGS 98 (103)
T ss_dssp CSEECEEEECTTCS
T ss_pred CCeEEEEEEECCCC
Confidence 56789999886543
No 174
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=98.14 E-value=4.3e-06 Score=66.53 Aligned_cols=84 Identities=18% Similarity=0.297 Sum_probs=61.3
Q ss_pred cccceEEEEecC----cceeEEeeeCC-----CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHH
Q 023871 82 EKYEEYEVEIEQ----PYGLKFAKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMY 152 (276)
Q Consensus 82 ~~~~~y~V~l~K----PLGl~f~e~~d-----Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~ 152 (276)
.+.+..+|+|.| ++|+.+..+.+ .++||..|.|+|.|+++|.|++||+|+.+-.. .+-. ...-.++.
T Consensus 21 ~~~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~---~v~~-~~~~~~~~ 96 (120)
T 2iwo_A 21 QSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGT---STEG-MTHTQAVN 96 (120)
T ss_dssp ----CEEEEEEC----CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTE---ECTT-CBHHHHHH
T ss_pred CCCCcEEEEEEcCCCCCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCE---ECCC-CCHHHHHH
Confidence 344557788875 78899887643 38999999999999999559999999998753 2211 13446777
Q ss_pred HhhcccCceEEEEeecC
Q 023871 153 TIRQRVGPLLMKMQKRY 169 (276)
Q Consensus 153 air~r~gpv~L~l~R~~ 169 (276)
.|+...+.+.|++.|..
T Consensus 97 ~l~~~~~~v~l~v~r~g 113 (120)
T 2iwo_A 97 LLKNASGSIEMQVVAGG 113 (120)
T ss_dssp HHHHCCSEEEEEEECCT
T ss_pred HHHcCCCeEEEEEEECC
Confidence 88877778999999854
No 175
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.14 E-value=1.3e-06 Score=81.42 Aligned_cols=79 Identities=9% Similarity=-0.061 Sum_probs=51.0
Q ss_pred cCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCC-HHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcC
Q 023871 189 NSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGK-YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN 266 (276)
Q Consensus 189 ~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~gr-YeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLg 266 (276)
..|++++++.. |.++-++... ...|+..|..+..+|+ |++||..|++||.++|++. .+|+|++.||.++|
T Consensus 109 ~~g~~~~Al~~-----~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~---~a~~~~g~~~~~~g 180 (382)
T 2h6f_A 109 RDERSERAFKL-----TRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY---QVWHHRRVLVEWLR 180 (382)
T ss_dssp HTCCCHHHHHH-----HHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHT
T ss_pred HCCChHHHHHH-----HHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHcc
Confidence 56677766443 3444444444 3445677777777775 7777777777777777764 46777777777777
Q ss_pred ChhHHHhhh
Q 023871 267 QVPLLLALI 275 (276)
Q Consensus 267 q~~eAI~aL 275 (276)
++++|+..+
T Consensus 181 ~~~eAl~~~ 189 (382)
T 2h6f_A 181 DPSQELEFI 189 (382)
T ss_dssp CCTTHHHHH
T ss_pred CHHHHHHHH
Confidence 777776654
No 176
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=98.13 E-value=1e-05 Score=64.00 Aligned_cols=82 Identities=16% Similarity=0.207 Sum_probs=63.0
Q ss_pred ceEEEEecC----cceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhccc
Q 023871 85 EEYEVEIEQ----PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV 158 (276)
Q Consensus 85 ~~y~V~l~K----PLGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~ 158 (276)
...+|+|.| .+|+.+..+.+ .+++|..|.+||.|+++|.+++||+|+++... .+ .-..+..+...|+...
T Consensus 19 ~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~---~v-~~~~~~~~~~~l~~~~ 94 (125)
T 3hpk_A 19 VPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGR---SI-KGKTKVEVAKMIQEVK 94 (125)
T ss_dssp EEEEEEEECCTTSCCCEEEEECSSCCSSEEEEEECTTSHHHHHCCCCTTCEEEEETTE---EC-TTCCHHHHHHHHHHSC
T ss_pred CCeEEEEEeCCCCCcCEEEeccCCCCCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCE---EC-CCCCHHHHHHHHHcCC
Confidence 456677777 58999887644 48999999999999999999999999998743 22 1113446677788777
Q ss_pred CceEEEEeecCC
Q 023871 159 GPLLMKMQKRYG 170 (276)
Q Consensus 159 gpv~L~l~R~~~ 170 (276)
+.+.|.+.|..+
T Consensus 95 ~~v~l~v~r~~~ 106 (125)
T 3hpk_A 95 GEVTIHYNKLQA 106 (125)
T ss_dssp SEEEEEEEEECS
T ss_pred CeEEEEEEECCC
Confidence 789999998554
No 177
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.13 E-value=1.2e-05 Score=63.02 Aligned_cols=84 Identities=21% Similarity=0.368 Sum_probs=60.8
Q ss_pred cccccceEEEEec----CcceeEEeeeCC--------CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccc
Q 023871 80 QEEKYEEYEVEIE----QPYGLKFAKGRD--------GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY 147 (276)
Q Consensus 80 ~~~~~~~y~V~l~----KPLGl~f~e~~d--------Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~ 147 (276)
.+...+.++|+|. .++|+.+..+.+ .+++|..|.|++.|+ +| |++||+|+.+... .+-.. ..
T Consensus 9 ~~~~~~~~~v~l~k~~~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~g-L~~GD~I~~Vng~---~v~~~-~~ 82 (117)
T 2csj_A 9 EEVIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GL-LQENDRVVMVNGT---PMEDV-LH 82 (117)
T ss_dssp SCEEEEEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HH-BCTTCEEEEESSC---BCBTC-CH
T ss_pred ccccceEEEEEEEECCCCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-cc-CCCCCEEEEECCE---ECCCc-CH
Confidence 3455677888886 468899887643 389999999999996 66 9999999998742 33111 22
Q ss_pred hhHHHHhhcccCceEEEEeecC
Q 023871 148 GRTMYTIRQRVGPLLMKMQKRY 169 (276)
Q Consensus 148 g~~~~air~r~gpv~L~l~R~~ 169 (276)
-.++.+++....++.|.+.|+.
T Consensus 83 ~~~~~~l~~~~~~v~l~v~R~~ 104 (117)
T 2csj_A 83 SFAVQQLRKSGKIAAIVVKRPR 104 (117)
T ss_dssp HHHHHHHHHSCSEEEEEEEEEE
T ss_pred HHHHHHHhcCCCeEEEEEEECC
Confidence 3456667765678999999854
No 178
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=98.12 E-value=6.9e-06 Score=61.39 Aligned_cols=80 Identities=21% Similarity=0.316 Sum_probs=57.2
Q ss_pred EEEEecC---cceeEEeeeCCC-CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceE
Q 023871 87 YEVEIEQ---PYGLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL 162 (276)
Q Consensus 87 y~V~l~K---PLGl~f~e~~dG-gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~ 162 (276)
-.|+|.| .+|+.+..+.+. +++|..|.+++.|+++| |++||+|+++... .+-. ..+..+...|+...+.+.
T Consensus 7 r~v~l~~~~~~~G~~l~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~ing~---~v~~-~~~~~~~~~l~~~~~~~~ 81 (95)
T 3r68_A 7 RVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGK---SVEA-LDHDGVVEMIRKGGDQTT 81 (95)
T ss_dssp EEEEEECBTTBCSCEEEEC--CCSEEEECCCTTSHHHHHT-CCTTEEEEEETTE---ECTT-CCHHHHHHHHHTTTTEEE
T ss_pred EEEEEecCCCcccEEEEecCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCE---ECCC-CCHHHHHHHHHhCCCeEE
Confidence 3455554 588998876443 99999999999999999 9999999998753 2211 122566777887778888
Q ss_pred EEEeecCCC
Q 023871 163 MKMQKRYGK 171 (276)
Q Consensus 163 L~l~R~~~~ 171 (276)
+.+.|+-++
T Consensus 82 ~~~~r~~~~ 90 (95)
T 3r68_A 82 LLVLDKELE 90 (95)
T ss_dssp EEEEECC--
T ss_pred EEEECCccc
Confidence 888886553
No 179
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.12 E-value=4.2e-06 Score=74.62 Aligned_cols=81 Identities=12% Similarity=-0.039 Sum_probs=64.2
Q ss_pred hhcCCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcC
Q 023871 187 ERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN 266 (276)
Q Consensus 187 ~r~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLg 266 (276)
-...|++++++..++ +..++......++..|..+++.|+|++|+..|+++++++|++. .+|++++.||.++|
T Consensus 16 ~~~~g~~~~A~~~~~-----~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 16 FFRNKKYDDAIKYYN-----WALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYS---KVLLRRASANEGLG 87 (514)
T ss_dssp HHHTSCHHHHHHHHH-----HHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCH---HHHHHHHHHHHHTT
T ss_pred HHHhccHHHHHHHHH-----HHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHH---HHHHHHHHHHHHHh
Confidence 347788888855444 4444444455677889999999999999999999999999885 58999999999999
Q ss_pred ChhHHHhhh
Q 023871 267 QVPLLLALI 275 (276)
Q Consensus 267 q~~eAI~aL 275 (276)
++++|+..+
T Consensus 88 ~~~~A~~~~ 96 (514)
T 2gw1_A 88 KFADAMFDL 96 (514)
T ss_dssp CHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 999998875
No 180
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.11 E-value=1.2e-05 Score=65.15 Aligned_cols=92 Identities=11% Similarity=0.008 Sum_probs=68.6
Q ss_pred HHHhhcCCCcchhHHHHHHHH--HhhH--HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-----CChhhHHHH
Q 023871 184 IRAERNSGVISNRVREIQMQN--YMKK--KEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSK-----PTPEESSVA 254 (276)
Q Consensus 184 ~~~~r~~G~i~~al~Eiq~~n--Ykk~--Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~-----P~~~e~a~A 254 (276)
...-...|++++++..++..- +++. ..-......+...|..++..|+|++|+..|++|+.+. |+++....+
T Consensus 50 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 129 (283)
T 3edt_B 50 ALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQ 129 (283)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 345557888888866655521 1111 0013334456789999999999999999999999873 555556789
Q ss_pred HHHHhHHHHhcCChhHHHhhh
Q 023871 255 SYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 255 ~YN~AcCyaKLgq~~eAI~aL 275 (276)
++|+|.||..+|++++|+..+
T Consensus 130 ~~~la~~~~~~g~~~~A~~~~ 150 (283)
T 3edt_B 130 LNNLALLCQNQGKAEEVEYYY 150 (283)
T ss_dssp HHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999876
No 181
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.11 E-value=4.4e-06 Score=68.46 Aligned_cols=79 Identities=11% Similarity=0.088 Sum_probs=63.4
Q ss_pred cCCCcchhHHHHHHHHHhhHHHH-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871 189 NSGVISNRVREIQMQNYMKKKEQ-----KERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS 263 (276)
Q Consensus 189 ~~G~i~~al~Eiq~~nYkk~Kel-----kkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya 263 (276)
..|++++++..++. ..+. ....+.++..|..++..|+|++|+..|++|+.++|++. .+|+++|.||.
T Consensus 17 ~~~~~~~A~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~ 88 (275)
T 1xnf_A 17 PTLQQEVILARMEQ-----ILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP---EVFNYLGIYLT 88 (275)
T ss_dssp CCHHHHHHHHHHHH-----HHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHH
T ss_pred ccchHHHHHHHHHH-----HHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHH
Confidence 34666666555543 3322 23345678999999999999999999999999999985 58999999999
Q ss_pred hcCChhHHHhhh
Q 023871 264 KLNQVPLLLALI 275 (276)
Q Consensus 264 KLgq~~eAI~aL 275 (276)
.+|++++|+..+
T Consensus 89 ~~~~~~~A~~~~ 100 (275)
T 1xnf_A 89 QAGNFDAAYEAF 100 (275)
T ss_dssp HTTCHHHHHHHH
T ss_pred HccCHHHHHHHH
Confidence 999999999876
No 182
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=98.10 E-value=9e-06 Score=60.36 Aligned_cols=80 Identities=24% Similarity=0.405 Sum_probs=57.0
Q ss_pred ceEEEEecC--cceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCc
Q 023871 85 EEYEVEIEQ--PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP 160 (276)
Q Consensus 85 ~~y~V~l~K--PLGl~f~e~~--dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gp 160 (276)
++++|++++ ++|+.+..+. +.+++|..|.|++.|+++| |++||+|+.+-.. .+-.. .+..++..++....+
T Consensus 3 ~~~~v~~~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~---~v~~~-~~~~~~~~~~~~g~~ 77 (89)
T 2q3g_A 3 DSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGE---NAGSL-THIEAQNKIRACGER 77 (89)
T ss_dssp EEEEEEEESSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTCEEEEETTE---EGGGC-CHHHHHHHHHTCTTE
T ss_pred cEEEEEEcCCCcccEEEECcCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECCCC-CHHHHHHHHHhCCCE
Confidence 446666654 5677776543 3489999999999999999 9999999998643 22211 344566677755667
Q ss_pred eEEEEeecC
Q 023871 161 LLMKMQKRY 169 (276)
Q Consensus 161 v~L~l~R~~ 169 (276)
+.|.+.|..
T Consensus 78 v~l~v~R~~ 86 (89)
T 2q3g_A 78 LSLGLSRAI 86 (89)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEeCC
Confidence 899998853
No 183
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=98.10 E-value=5.7e-06 Score=62.06 Aligned_cols=73 Identities=22% Similarity=0.449 Sum_probs=56.5
Q ss_pred CcceeEEeeeC-CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeecC
Q 023871 93 QPYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRY 169 (276)
Q Consensus 93 KPLGl~f~e~~-dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~~ 169 (276)
.+||+.+.... +++++|..|.++|.|+++|.|++||+|+.+... .+ ....+..+...|+...+++.|++.|..
T Consensus 15 ~~lG~~i~~~~~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~---~v-~~~~~~~~~~~l~~~~~~v~l~v~~~~ 88 (93)
T 3o46_A 15 EPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGI---PV-EDKRPEEIIQILAQSQGAITFKIIPGS 88 (93)
T ss_dssp SCCCEEEEECTTTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTE---ES-TTSCHHHHHHHHHHCCEEEEEEEECC-
T ss_pred CCccEEEEecCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---EC-CCCCHHHHHHHHHhCCCeEEEEEEeCC
Confidence 47999998753 569999999999999999999999999998642 33 113444667778877778999988754
No 184
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.10 E-value=1.9e-05 Score=69.82 Aligned_cols=89 Identities=19% Similarity=0.269 Sum_probs=58.5
Q ss_pred hhcCCCcchhHHHHHHH-----HHhh---HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH-HHHHHH
Q 023871 187 ERNSGVISNRVREIQMQ-----NYMK---KKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES-SVASYN 257 (276)
Q Consensus 187 ~r~~G~i~~al~Eiq~~-----nYkk---~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~-a~A~YN 257 (276)
-...|++++++..++.. .... ....-......+..|..+++.|+|++|+..|++++.+.|++... ..++++
T Consensus 221 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 300 (450)
T 2y4t_A 221 YYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKER 300 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 34667777777766651 1111 11111122233466888888888888888888888888887554 557788
Q ss_pred HhHHHHhcCChhHHHhhh
Q 023871 258 VACCYSKLNQVPLLLALI 275 (276)
Q Consensus 258 ~AcCyaKLgq~~eAI~aL 275 (276)
++.||.++|++++|+..+
T Consensus 301 l~~~~~~~g~~~~A~~~~ 318 (450)
T 2y4t_A 301 ICHCFSKDEKPVEAIRVC 318 (450)
T ss_dssp HHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH
Confidence 888888888888887654
No 185
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=98.09 E-value=5.7e-06 Score=66.24 Aligned_cols=81 Identities=11% Similarity=0.240 Sum_probs=60.0
Q ss_pred ceEEEEecC---cceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc--
Q 023871 85 EEYEVEIEQ---PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR-- 157 (276)
Q Consensus 85 ~~y~V~l~K---PLGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r-- 157 (276)
+.++|+|.| .+|+.+..+.+ .+++|..|.++|.|+++|.|++||+|+.+-.. .+ .-..+..+...|+..
T Consensus 18 ~~~~v~l~~~~~g~G~~i~g~~~~~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~---~v-~~~~~~~~~~~l~~~~~ 93 (129)
T 2kpk_A 18 KFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDT---CV-LGHTHAQVVKIFQSIPI 93 (129)
T ss_dssp EEEEEEEEECSSCCSEEEEEEEETTEEEEEEEECTTSHHHHHSSCCTTCEEEEETTE---EC-TTSCHHHHHHHHHHSCT
T ss_pred cEEEEEEEECCCcccEEEeCccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCE---EC-CCCCHHHHHHHHHhCCC
Confidence 557777765 58888876533 37999999999999999999999999998643 11 111234566677754
Q ss_pred cCceEEEEeecC
Q 023871 158 VGPLLMKMQKRY 169 (276)
Q Consensus 158 ~gpv~L~l~R~~ 169 (276)
..++.|++.|..
T Consensus 94 g~~v~l~v~R~~ 105 (129)
T 2kpk_A 94 GASVDLELCRGY 105 (129)
T ss_dssp TEEEEEEEEECS
T ss_pred CCeEEEEEEeCC
Confidence 456999999965
No 186
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.09 E-value=6.7e-06 Score=61.25 Aligned_cols=78 Identities=22% Similarity=0.451 Sum_probs=57.5
Q ss_pred EEEec---CcceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceE
Q 023871 88 EVEIE---QPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL 162 (276)
Q Consensus 88 ~V~l~---KPLGl~f~e~~--dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~ 162 (276)
.|+|. .++|+.+..+. +++++|..|.+++.|+++|.|++||+|+++... .+-.. .+..++..++...+++.
T Consensus 8 ~v~l~k~~~glG~~l~~~~~~~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~---~v~~~-~~~~~~~~~~~~~~~v~ 83 (93)
T 2dkr_A 8 VVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGV---SVEGE-QHEKAVELLKAAQGSVK 83 (93)
T ss_dssp EEEEECCTTCCCEEEECSSSSSCCCEEEEECTTSHHHHHCCCCTTCBEEEETTE---ECTTS-CHHHHHHHHHHCCSEEE
T ss_pred EEEEEeCCCCccEEEecccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECCCC-CHHHHHHHHHhCCCcEE
Confidence 45554 46889987643 469999999999999999669999999998642 22111 34456667775567899
Q ss_pred EEEeecC
Q 023871 163 MKMQKRY 169 (276)
Q Consensus 163 L~l~R~~ 169 (276)
|.+.|..
T Consensus 84 l~v~r~~ 90 (93)
T 2dkr_A 84 LVVRSGP 90 (93)
T ss_dssp EEECCCC
T ss_pred EEEEeCC
Confidence 9998864
No 187
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.09 E-value=9.5e-06 Score=65.36 Aligned_cols=81 Identities=10% Similarity=-0.003 Sum_probs=64.9
Q ss_pred hhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhc
Q 023871 187 ERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL 265 (276)
Q Consensus 187 ~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKL 265 (276)
-...|++++++..++. +.++... ..-+...|..+++.|+|++|+..|+++++++|++. .+|++++.||.++
T Consensus 149 ~~~~~~~~~A~~~~~~-----a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~l~~~~~~~ 220 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTE-----MIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV---RAYIRKATAQIAV 220 (258)
T ss_dssp HHHTTCHHHHHHHHHH-----HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHH-----HHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHH---HHHHHHHHHHHHH
Confidence 3466777777555444 3333332 34467889999999999999999999999999985 6899999999999
Q ss_pred CChhHHHhhh
Q 023871 266 NQVPLLLALI 275 (276)
Q Consensus 266 gq~~eAI~aL 275 (276)
|++++|+..+
T Consensus 221 g~~~~A~~~~ 230 (258)
T 3uq3_A 221 KEYASALETL 230 (258)
T ss_dssp TCHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 9999999876
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.09 E-value=3.6e-06 Score=77.51 Aligned_cols=65 Identities=15% Similarity=0.154 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh-------------hhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 211 QKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTP-------------EESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 211 lkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~-------------~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.......++..|+.+++.|+|++|+..|++||.+.|+. +....+|+|+|.||.+++++++|++.+
T Consensus 219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~ 296 (370)
T 1ihg_A 219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSC 296 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 33455667899999999999999999999999844331 223678999999999999999999875
No 189
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.09 E-value=1.2e-05 Score=63.55 Aligned_cols=88 Identities=17% Similarity=0.325 Sum_probs=64.8
Q ss_pred cccccceEEEEecC----cceeEEeee------CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchh
Q 023871 80 QEEKYEEYEVEIEQ----PYGLKFAKG------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGR 149 (276)
Q Consensus 80 ~~~~~~~y~V~l~K----PLGl~f~e~------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~ 149 (276)
.-...+.++|+|.| .+|+.+..+ .+..++|..|.+++.|+++|.|++||+|+.+... .+-. ..+.+
T Consensus 10 ~~~~~~~~~v~l~k~~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~---~v~~-~~~~~ 85 (122)
T 1v5q_A 10 QVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGI---PTED-STFEE 85 (122)
T ss_dssp CCCCEEEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTE---ESSS-SCHHH
T ss_pred ccccceeEEEEEEeCCCCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCE---ECCC-CCHHH
Confidence 34456889999975 478888754 2347999999999999999999999999998642 2211 12555
Q ss_pred HHHHhhcc--cCceEEEEeecCCC
Q 023871 150 TMYTIRQR--VGPLLMKMQKRYGK 171 (276)
Q Consensus 150 ~~~air~r--~gpv~L~l~R~~~~ 171 (276)
+...|+.. ..++.|.+.|...+
T Consensus 86 ~~~~l~~~~~g~~v~l~v~R~~~~ 109 (122)
T 1v5q_A 86 ANQLLRDSSITSKVTLEIEFDVAE 109 (122)
T ss_dssp HHHHHHHHTTTTCEEEEEEEECCC
T ss_pred HHHHHHhCCCCCeEEEEEEECCcc
Confidence 66677754 45899999996543
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.09 E-value=2.1e-06 Score=77.31 Aligned_cols=62 Identities=18% Similarity=0.240 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH--------------HHHHHHHhHHHHhcCChhHHHhhh
Q 023871 214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES--------------SVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 214 qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~--------------a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.++.++..|+.+++.|+|++|+..|++||.+.|++..+ ..+|+|+|.||.+++++++|+..+
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~ 253 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHC 253 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34567799999999999999999999999999987521 248999999999999999999875
No 191
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=98.09 E-value=5.5e-06 Score=59.62 Aligned_cols=67 Identities=25% Similarity=0.405 Sum_probs=51.9
Q ss_pred cCcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecc--cchhHHHHhhcccCceEEEEeec
Q 023871 92 EQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA--EYGRTMYTIRQRVGPLLMKMQKR 168 (276)
Q Consensus 92 ~KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~--~~g~~~~air~r~gpv~L~l~R~ 168 (276)
.+++|+.+. ++++|..|.+++.|+++|.|++||+|+.+... +.. .+..+...|+...+++.|.+.|.
T Consensus 12 ~~~~g~~~~----~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~------~v~~~~~~~~~~~l~~~~~~v~l~v~R~ 80 (81)
T 2rcz_A 12 NEEYGLRLA----SHIFVKEISQDSLAARDGNIQEGDVVLKINGT------VTENMSLTDAKTLIERSKGKLKMVVQRD 80 (81)
T ss_dssp TCCCCEEEE----EEEEEEEECTTSHHHHHSSCCTTCEEEEETTE------ECTTCCHHHHHHHHHTSTTEEEEEEEC-
T ss_pred CCCCCEEEe----CCEEEEEECCCChHHHCCCCCCCCEEEEECCE------ECCCCCHHHHHHHHHCCCCeEEEEEEeC
Confidence 457787766 68999999999999999989999999998642 233 45556677776567888888873
No 192
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.08 E-value=1.3e-05 Score=62.49 Aligned_cols=82 Identities=20% Similarity=0.308 Sum_probs=59.6
Q ss_pred ccceEEEEecC----cceeEEeeeC----CC-----CeEEEEeCCCCCccc-ccCcccCCEEEEeecccCCcceecccch
Q 023871 83 KYEEYEVEIEQ----PYGLKFAKGR----DG-----GTYIDAIAPGGSADK-TGMFQVGDKVLATSAVFGTEIWPAAEYG 148 (276)
Q Consensus 83 ~~~~y~V~l~K----PLGl~f~e~~----dG-----gv~V~~v~~ggnA~k-~G~i~vGD~l~~~Sa~fGdevw~a~~~g 148 (276)
..+.++|+|.| ++|+.+.... .| .++|..|.+++.|++ +| |++||+|+++... .+... .+.
T Consensus 8 ~~~~~~v~l~~~~~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~ag-L~~GD~I~~ing~---~v~~~-~~~ 82 (114)
T 1uew_A 8 SLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAK-LKVGDRILAVNGQ---SIINM-PHA 82 (114)
T ss_dssp CCCCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSS-CCTTCBEEEETTB---CTTTS-CHH
T ss_pred cccceEEEEEECCCCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCC-CCCCCEEEEECCE---ECCCC-CHH
Confidence 34667888865 5899997542 22 569999999999999 77 9999999998753 33221 145
Q ss_pred hHHHHhhcccCceEEEEeecC
Q 023871 149 RTMYTIRQRVGPLLMKMQKRY 169 (276)
Q Consensus 149 ~~~~air~r~gpv~L~l~R~~ 169 (276)
.+...|+....++.|.+.|.-
T Consensus 83 ~~~~~l~~~g~~v~l~v~r~~ 103 (114)
T 1uew_A 83 DIVKLIKDAGLSVTLRIIPQE 103 (114)
T ss_dssp HHHHHHHHTTTEEEEEECCCS
T ss_pred HHHHHHHcCCCeEEEEEEeCC
Confidence 666677765677899998853
No 193
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=98.08 E-value=8.1e-06 Score=62.11 Aligned_cols=70 Identities=20% Similarity=0.447 Sum_probs=52.0
Q ss_pred cceeEEeee--------------CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhccc-
Q 023871 94 PYGLKFAKG--------------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV- 158 (276)
Q Consensus 94 PLGl~f~e~--------------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~- 158 (276)
+||+.+.-+ .++|++|..|.|++.|+++| |++||+|+.+... .+-.. .+..+..+++...
T Consensus 20 ~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~---~v~~~-~~~~~~~~l~~~~g 94 (104)
T 3sfj_A 20 ILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGW---DMTMV-THDQARKRLTKRSE 94 (104)
T ss_dssp ECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTE---ECTTC-CHHHHHHHHTCTTC
T ss_pred cccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCE---ECCCC-CHHHHHHHHHhCCC
Confidence 489888732 24589999999999999999 9999999998642 33211 2446677777544
Q ss_pred CceEEEEeec
Q 023871 159 GPLLMKMQKR 168 (276)
Q Consensus 159 gpv~L~l~R~ 168 (276)
.++.|.+.|+
T Consensus 95 ~~v~l~v~R~ 104 (104)
T 3sfj_A 95 EVVRLLVTRQ 104 (104)
T ss_dssp SEEEEEEEEC
T ss_pred CEEEEEEEcC
Confidence 5789988874
No 194
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=98.08 E-value=8.9e-06 Score=61.06 Aligned_cols=70 Identities=19% Similarity=0.334 Sum_probs=53.1
Q ss_pred cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeecCCC
Q 023871 94 PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGK 171 (276)
Q Consensus 94 PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~~~~ 171 (276)
++|+.+. |++||..|.+||.|+++|.+++||+|+.+... .+ ......++...|+...+.+.|++.+....
T Consensus 14 ~~G~~~~----~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~---~v-~~~~~~~~~~~i~~~~~~v~L~v~~~~~~ 83 (88)
T 3e17_A 14 EYGLRLG----SQIFVKEMTRTGLATKDGNLHEGDIILKINGT---VT-ENMSLTDARKLIEKSRGKLQLVVLRDLEH 83 (88)
T ss_dssp CCCEEEE----EEEEEEEECTTSHHHHHCCCCTTCEEEEETTE---EC-TTCCHHHHHHHHHHTTTEEEEEECCC---
T ss_pred CCCEEEe----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---EC-CCCCHHHHHHHHHcCCCeEEEEEeCCCcc
Confidence 5677663 48999999999999999999999999998753 22 11244567788888888999998886543
No 195
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.07 E-value=6e-06 Score=71.68 Aligned_cols=84 Identities=13% Similarity=-0.047 Sum_probs=63.3
Q ss_pred hhcCCCcchhHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCChh---hHHHHH
Q 023871 187 ERNSGVISNRVREIQMQNYMKKKEQKER-------REQDLREGLQLYRT-GKYEVAREKFESVLGSKPTPE---ESSVAS 255 (276)
Q Consensus 187 ~r~~G~i~~al~Eiq~~nYkk~Kelkkq-------ae~~~~eGnaLfk~-grYeEAI~~Ye~AL~i~P~~~---e~a~A~ 255 (276)
-+..|++++++.. |+++-++..+ +..+.+-|..+... |+|++|+..|++||++.|+.. ....++
T Consensus 87 ~~~~g~~~~A~~~-----~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~ 161 (292)
T 1qqe_A 87 FKSGGNSVNAVDS-----LENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCF 161 (292)
T ss_dssp HHHTTCHHHHHHH-----HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHCCCHHHHHHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 3456677776544 4445444433 34456888888885 999999999999999988542 225679
Q ss_pred HHHhHHHHhcCChhHHHhhh
Q 023871 256 YNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 256 YN~AcCyaKLgq~~eAI~aL 275 (276)
.|++.+|.++|++++|+..+
T Consensus 162 ~~lg~~~~~~g~~~~A~~~~ 181 (292)
T 1qqe_A 162 IKCADLKALDGQYIEASDIY 181 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999875
No 196
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.07 E-value=7.7e-06 Score=70.87 Aligned_cols=84 Identities=12% Similarity=0.018 Sum_probs=67.9
Q ss_pred HHHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHH
Q 023871 184 IRAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY 262 (276)
Q Consensus 184 ~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCy 262 (276)
...-...|++++++..++. ..++... ...++..|..+++.|+|++|+..|++|++++|++. .+|++++.||
T Consensus 72 ~~~~~~~g~~~~A~~~~~~-----al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~ 143 (365)
T 4eqf_A 72 GLKRLKEGDLPVTILFMEA-----AILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNL---KALMALAVSY 143 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHH-----HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHH-----HHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHH
Confidence 4445577888888665554 3333322 34567999999999999999999999999999985 6899999999
Q ss_pred HhcCChhHHHhhh
Q 023871 263 SKLNQVPLLLALI 275 (276)
Q Consensus 263 aKLgq~~eAI~aL 275 (276)
..+|++++|+..+
T Consensus 144 ~~~g~~~~A~~~~ 156 (365)
T 4eqf_A 144 TNTSHQQDACEAL 156 (365)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HccccHHHHHHHH
Confidence 9999999999876
No 197
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.07 E-value=1.5e-05 Score=62.71 Aligned_cols=86 Identities=24% Similarity=0.430 Sum_probs=62.7
Q ss_pred ccccceEEEEecC----------cceeEEeeeCC-------CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCccee
Q 023871 81 EEKYEEYEVEIEQ----------PYGLKFAKGRD-------GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWP 143 (276)
Q Consensus 81 ~~~~~~y~V~l~K----------PLGl~f~e~~d-------Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~ 143 (276)
..+....+|+|.| +||+.+..+.+ .++||..|.+++.|+++|.|++||+|+.+... .+-
T Consensus 8 ~~~~~~~~v~l~r~~~~~~~~~~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~---~v~- 83 (117)
T 1ujd_A 8 HYIFPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGI---PLT- 83 (117)
T ss_dssp CCSSCEEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTE---ECT-
T ss_pred CCCCceEEEEEEecCcccCCCCCcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---EcC-
Confidence 3444555666665 46888876533 17999999999999999999999999998743 221
Q ss_pred cccchhHHHHhhcccCceEEEEeecCC
Q 023871 144 AAEYGRTMYTIRQRVGPLLMKMQKRYG 170 (276)
Q Consensus 144 a~~~g~~~~air~r~gpv~L~l~R~~~ 170 (276)
...+-++...|+....++.|.+.|...
T Consensus 84 ~~~~~~~~~~l~~~~~~v~l~v~R~~~ 110 (117)
T 1ujd_A 84 SKTYEEVQSIISQQSGEAEICVRLDLN 110 (117)
T ss_dssp TCCHHHHHHHHSCCSSCEEEEEESSCC
T ss_pred CCCHHHHHHHHhcCCCEEEEEEEECCc
Confidence 112345677788767889999998543
No 198
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=98.07 E-value=1.1e-05 Score=59.81 Aligned_cols=66 Identities=26% Similarity=0.407 Sum_probs=51.7
Q ss_pred CcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecc--cchhHHHHhhcccCceEEEEeec
Q 023871 93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA--EYGRTMYTIRQRVGPLLMKMQKR 168 (276)
Q Consensus 93 KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~--~~g~~~~air~r~gpv~L~l~R~ 168 (276)
+++|+.+. ++++|..|.+++.|+++|.|++||+|+.+... +.. .+..+..+|+...+++.|.+.|.
T Consensus 15 ~~~g~~~~----~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~------~v~~~~~~~~~~~l~~~~~~v~l~v~r~ 82 (92)
T 3cyy_A 15 EEYGLRLA----SHIFVKEISQDSLAARDGNIQEGDVVLKINGT------VTENMSLTDAKTLIERSKGKLKMVVQRD 82 (92)
T ss_dssp SCCCEEEE----EEEEEEEECTTCHHHHSCCCCTTCEEEEETTE------ECTTCCHHHHHHHHHTTTTEEEEEEEC-
T ss_pred CCCCEEEe----CCEEEEEECCCChHHhcCCCCCCCEEEEECCE------ECCCCCHHHHHHHHHcCCCcEEEEEEeC
Confidence 36787775 68999999999999999989999999998742 233 45566677776667889999884
No 199
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.06 E-value=1.3e-05 Score=67.39 Aligned_cols=87 Identities=13% Similarity=-0.053 Sum_probs=63.4
Q ss_pred hhcCCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcC
Q 023871 187 ERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN 266 (276)
Q Consensus 187 ~r~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLg 266 (276)
-...|++++++..++...-...........-+...|..+++.|+|++|+..|+++++++|++. .+|++++.||.++|
T Consensus 244 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g 320 (359)
T 3ieg_A 244 LIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNV---NALKDRAEAYLIEE 320 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHcC
Confidence 345677777766655511111000111112245678899999999999999999999999885 58999999999999
Q ss_pred ChhHHHhhhC
Q 023871 267 QVPLLLALIE 276 (276)
Q Consensus 267 q~~eAI~aLE 276 (276)
++++|+..++
T Consensus 321 ~~~~A~~~~~ 330 (359)
T 3ieg_A 321 MYDEAIQDYE 330 (359)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999998763
No 200
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=98.05 E-value=7.5e-06 Score=66.09 Aligned_cols=71 Identities=21% Similarity=0.324 Sum_probs=52.9
Q ss_pred cceeEEeeeC-----CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhccc--CceEEEEe
Q 023871 94 PYGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV--GPLLMKMQ 166 (276)
Q Consensus 94 PLGl~f~e~~-----dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~--gpv~L~l~ 166 (276)
+||+.+..+. +.++||..|.++|.|+++|.|++||+|+.+-.. .+ .-..+..+...|+... ..|.|++.
T Consensus 49 ~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~---~v-~~~~~~~~~~~l~~~~~g~~v~l~v~ 124 (131)
T 1wfg_A 49 MLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGR---LL-QGATFEEVYNIILESKPEPQVELVVS 124 (131)
T ss_dssp TTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTE---EC-TTCCHHHHHHHHHHTSSSSEEEEEEE
T ss_pred CCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCE---EC-CCCCHHHHHHHHHhcCCCCEEEEEEE
Confidence 4899986542 228999999999999999999999999998743 11 1112356677777542 77899998
Q ss_pred ec
Q 023871 167 KR 168 (276)
Q Consensus 167 R~ 168 (276)
|.
T Consensus 125 R~ 126 (131)
T 1wfg_A 125 RS 126 (131)
T ss_dssp EE
T ss_pred cC
Confidence 85
No 201
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=98.05 E-value=1.8e-05 Score=61.07 Aligned_cols=77 Identities=19% Similarity=0.369 Sum_probs=56.7
Q ss_pred eEEEEec----CcceeEEeeeCC--------------CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccc
Q 023871 86 EYEVEIE----QPYGLKFAKGRD--------------GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY 147 (276)
Q Consensus 86 ~y~V~l~----KPLGl~f~e~~d--------------Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~ 147 (276)
...|+|. .++|+.+..+.+ .|++|..|.+++.|+++| |++||+|+.+... +...+
T Consensus 8 ~~~v~l~~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~------~v~~~ 80 (109)
T 1q3o_A 8 EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQ------NVVKV 80 (109)
T ss_dssp EEEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTE------ECTTC
T ss_pred cEEEEEEECCCCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE------ECCCC
Confidence 3456665 368899877643 179999999999999999 9999999998753 22233
Q ss_pred --hhHHHHhhcccCceEEEEeecC
Q 023871 148 --GRTMYTIRQRVGPLLMKMQKRY 169 (276)
Q Consensus 148 --g~~~~air~r~gpv~L~l~R~~ 169 (276)
..+...|+.....+.|.+.|..
T Consensus 81 ~~~~~~~~l~~~~~~v~l~v~~~~ 104 (109)
T 1q3o_A 81 GHRQVVNMIRQGGNTLMVKVVMVT 104 (109)
T ss_dssp CHHHHHHHHHHTTTEEEEEEEEEE
T ss_pred CHHHHHHHHHhCCCEEEEEEEECC
Confidence 5566667655567888888754
No 202
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.05 E-value=2.5e-06 Score=68.14 Aligned_cols=57 Identities=18% Similarity=0.172 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
..+..|..+...|+|++|+..|++||+++|++. .+|++++.||..+|++++|+..++
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~---~a~~~la~~~~~~g~~~~A~~~~~ 64 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRG---DVKLAKADCLLETKQFELAQELLA 64 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSH---HHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH---HHHHHHHHHHHHCCCHHHHHHHHH
Confidence 356788888999999999999999999999885 589999999999999999988764
No 203
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.04 E-value=7e-06 Score=71.12 Aligned_cols=79 Identities=16% Similarity=0.127 Sum_probs=60.0
Q ss_pred cCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCC
Q 023871 189 NSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ 267 (276)
Q Consensus 189 ~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq 267 (276)
..|++++++.. |+++.++... ..-+...|..+++.|+|++|+..|++||+++|++. .+|+|++.||.++|+
T Consensus 225 ~~g~~~~A~~~-----~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 225 LSGEFNRAIDA-----FNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFI---RSRYNLGISCINLGA 296 (365)
T ss_dssp HHTCHHHHHHH-----HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTC
T ss_pred HCCCHHHHHHH-----HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch---HHHHHHHHHHHHCCC
Confidence 34555555333 3344333332 34467889999999999999999999999999985 689999999999999
Q ss_pred hhHHHhhh
Q 023871 268 VPLLLALI 275 (276)
Q Consensus 268 ~~eAI~aL 275 (276)
+++|+..+
T Consensus 297 ~~~A~~~~ 304 (365)
T 4eqf_A 297 YREAVSNF 304 (365)
T ss_dssp CHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999876
No 204
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.04 E-value=6.4e-06 Score=71.97 Aligned_cols=87 Identities=9% Similarity=0.014 Sum_probs=52.9
Q ss_pred hcCCCcchhHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh---hHHHHHHHHhHHH
Q 023871 188 RNSGVISNRVREIQM--QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE---ESSVASYNVACCY 262 (276)
Q Consensus 188 r~~G~i~~al~Eiq~--~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~---e~a~A~YN~AcCy 262 (276)
+..|++++++..++. ..|.+..........+.+-|..+.. |+|++|+..|++||++.|+.. ....+++|++.+|
T Consensus 87 ~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~ 165 (307)
T 2ifu_A 87 KDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLL 165 (307)
T ss_dssp HHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 356777777555554 2222211112223334566666666 888888888888887765432 2256777888888
Q ss_pred HhcCChhHHHhhh
Q 023871 263 SKLNQVPLLLALI 275 (276)
Q Consensus 263 aKLgq~~eAI~aL 275 (276)
.++|++++|+..+
T Consensus 166 ~~~g~~~~A~~~~ 178 (307)
T 2ifu_A 166 VRQQKFDEAAASL 178 (307)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 8888888877665
No 205
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.04 E-value=5.3e-06 Score=62.83 Aligned_cols=61 Identities=13% Similarity=0.055 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh----hhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTP----EESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~----~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.++++.-|..+|+.|+|+.|+.+|+.||...+++ .....++++.|-||.++|+++.|+..+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~ 69 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLT 69 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 4678999999999999999999999999653221 123578999999999999999999865
No 206
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.04 E-value=1.4e-05 Score=62.97 Aligned_cols=83 Identities=12% Similarity=0.002 Sum_probs=64.9
Q ss_pred HHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHH-HHHcCCH--HHHHHHHHHHHcCCCChhhHHHHHHHHhH
Q 023871 185 RAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQ-LYRTGKY--EVAREKFESVLGSKPTPEESSVASYNVAC 260 (276)
Q Consensus 185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGna-Lfk~grY--eEAI~~Ye~AL~i~P~~~e~a~A~YN~Ac 260 (276)
..-...|++++++.. |+++.++... ..-++..|.. ++..|+| ++|+..|++++.++|++. .+++|+|.
T Consensus 52 ~~~~~~~~~~~A~~~-----~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~ 123 (177)
T 2e2e_A 52 EYYLWQNDYSNSLLA-----YRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEI---TALMLLAS 123 (177)
T ss_dssp HHHHHTTCHHHHHHH-----HHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCH---HHHHHHHH
T ss_pred HHHHHcCCHHHHHHH-----HHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcH---HHHHHHHH
Confidence 444467777777544 4444444432 3446788988 5789999 999999999999999985 58999999
Q ss_pred HHHhcCChhHHHhhh
Q 023871 261 CYSKLNQVPLLLALI 275 (276)
Q Consensus 261 CyaKLgq~~eAI~aL 275 (276)
||..+|++++|+..+
T Consensus 124 ~~~~~g~~~~A~~~~ 138 (177)
T 2e2e_A 124 DAFMQANYAQAIELW 138 (177)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHcccHHHHHHHH
Confidence 999999999999876
No 207
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=98.04 E-value=1.8e-05 Score=66.53 Aligned_cols=84 Identities=14% Similarity=0.241 Sum_probs=63.0
Q ss_pred ceEEEEecC----cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCc
Q 023871 85 EEYEVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP 160 (276)
Q Consensus 85 ~~y~V~l~K----PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gp 160 (276)
..++|++.| .||+.+.. .+.++||..|.+||.|+++|.|++||+|+++... .|-.. .+-.+...++...++
T Consensus 113 ~~~~v~l~~~~~~~lG~~~~~-~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~---~v~~~-~~~~~~~~l~~~~~~ 187 (206)
T 3r0h_A 113 EKFNVDLMKKAGKELGLSLSP-NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGD---ALEGL-PFQVCYALFKGANGK 187 (206)
T ss_dssp EEEEEEEECCTTCCCCEEEEE-CSSCEEEEEECTTSCHHHHHHCCTTCEEEEETTE---ECTTC-CHHHHHHHHHTCCSE
T ss_pred cEEEEEEecCCCCccCeEEEc-CCceEEEEEECCCChHHHcCCCCCCCEEEEECCE---ECCCC-CHHHHHHHHHcCCCe
Confidence 456677643 57888875 3468999999999999999999999999998753 22111 234566777877789
Q ss_pred eEEEEeecCCCcc
Q 023871 161 LLMKMQKRYGKME 173 (276)
Q Consensus 161 v~L~l~R~~~~~~ 173 (276)
+.|.+.|+.....
T Consensus 188 v~L~V~R~~~~~~ 200 (206)
T 3r0h_A 188 VSMEVTRPKPTLR 200 (206)
T ss_dssp EEEEEEEECCCCC
T ss_pred EEEEEEeCCCCCC
Confidence 9999999776543
No 208
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.04 E-value=1.9e-05 Score=62.08 Aligned_cols=91 Identities=14% Similarity=0.088 Sum_probs=67.2
Q ss_pred HHhhcCCCcchhHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC---CCChh-hHHHHHHHH
Q 023871 185 RAERNSGVISNRVREIQM--QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGS---KPTPE-ESSVASYNV 258 (276)
Q Consensus 185 ~~~r~~G~i~~al~Eiq~--~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i---~P~~~-e~a~A~YN~ 258 (276)
......|++++++..+++ ..+++.........-+...|..+...|+|++|+..|++|+++ .|++. ....+++|+
T Consensus 34 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 113 (203)
T 3gw4_A 34 YVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEV 113 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 445578889888776665 222222222233445678899999999999999999999977 55333 447789999
Q ss_pred hHHHHhcCChhHHHhhh
Q 023871 259 ACCYSKLNQVPLLLALI 275 (276)
Q Consensus 259 AcCyaKLgq~~eAI~aL 275 (276)
+.+|..+|++++|+..+
T Consensus 114 g~~~~~~g~~~~A~~~~ 130 (203)
T 3gw4_A 114 ATVALHFGDLAGARQEY 130 (203)
T ss_dssp HHHHHHHTCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHH
Confidence 99999999999998765
No 209
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=98.04 E-value=1.5e-05 Score=60.13 Aligned_cols=76 Identities=12% Similarity=0.232 Sum_probs=55.8
Q ss_pred ceEEEEecC----cceeEEee-------eCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceeccc--chh
Q 023871 85 EEYEVEIEQ----PYGLKFAK-------GRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGR 149 (276)
Q Consensus 85 ~~y~V~l~K----PLGl~f~e-------~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~--~g~ 149 (276)
...+|+|.| ++|+.+.. +.+ .+++|..|.+++.|+++| |++||+|+.+... +... +..
T Consensus 4 ~~r~v~l~k~~~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~------~v~~~~~~~ 76 (96)
T 2ego_A 4 QRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVNGL------NVEGIRHRE 76 (96)
T ss_dssp CEEEEEEECCTTCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTT-CCTTCEEEEETTE------ECTTCCHHH
T ss_pred ccEEEEEEeCCCCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCE------ECCCCCHHH
Confidence 346777765 67888874 222 389999999999999999 9999999998743 2223 456
Q ss_pred HHHHhhcccCceEEEEee
Q 023871 150 TMYTIRQRVGPLLMKMQK 167 (276)
Q Consensus 150 ~~~air~r~gpv~L~l~R 167 (276)
+...|+...+++.|++.+
T Consensus 77 ~~~~l~~~~~~v~l~v~~ 94 (96)
T 2ego_A 77 IVDIIKASGNVLRLETLY 94 (96)
T ss_dssp HHHHHHHTTTEEEEEEEC
T ss_pred HHHHHHhCCCeEEEEEEE
Confidence 666777666788888866
No 210
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=98.03 E-value=9.9e-06 Score=62.34 Aligned_cols=82 Identities=22% Similarity=0.341 Sum_probs=61.0
Q ss_pred eEEEEecC----cceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccC
Q 023871 86 EYEVEIEQ----PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG 159 (276)
Q Consensus 86 ~y~V~l~K----PLGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~g 159 (276)
...|+|.| ++|+.+.-+.+ .+++|..|.++|.|++++.|++||+|+.+... .+-. ..+..+...|+...+
T Consensus 10 ~~~v~l~~~~~~~lG~~l~~g~~~~~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~---~v~~-~~~~~~~~~l~~~~~ 85 (103)
T 2dc2_A 10 IRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGV---NLRD-TKHKEAVTILSQQRG 85 (103)
T ss_dssp EEEEEEECCSSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHHTCCCSSEEEEEETTE---ESTT-SCHHHHHHHHHHCCS
T ss_pred cEEEEEEeCCCCccCEEEEeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCE---ECCC-CCHHHHHHHHHhCCC
Confidence 35677754 68899886633 38999999999999997449999999998743 3311 245567778887778
Q ss_pred ceEEEEeecCCC
Q 023871 160 PLLMKMQKRYGK 171 (276)
Q Consensus 160 pv~L~l~R~~~~ 171 (276)
.+.|++.|.+..
T Consensus 86 ~v~l~v~~~~~~ 97 (103)
T 2dc2_A 86 EIEFEVVYVALE 97 (103)
T ss_dssp EEEEEEEECC--
T ss_pred cEEEEEEecCCc
Confidence 999999997764
No 211
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=98.03 E-value=1.2e-05 Score=62.24 Aligned_cols=75 Identities=27% Similarity=0.445 Sum_probs=57.5
Q ss_pred cCcceeEEeeeC-------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEE
Q 023871 92 EQPYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMK 164 (276)
Q Consensus 92 ~KPLGl~f~e~~-------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~ 164 (276)
..++|+.+.-+. +++++|..|.++|.|+++|.|++||+|+.+... .+- -.....++..++...+++.|+
T Consensus 12 ~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~---~v~-~~~~~~~~~~l~~~~~~v~l~ 87 (106)
T 4amh_A 12 SKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNV---ALE-EVTHEEAVTALKNTSDFVYLK 87 (106)
T ss_dssp CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTE---ECS-SCCHHHHHHHHHSCCSEEEEE
T ss_pred CCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCE---ECC-CCCHHHHHHHHhCCCCeEEEE
Confidence 357898887653 348999999999999999999999999998753 221 123345667778777789999
Q ss_pred EeecCC
Q 023871 165 MQKRYG 170 (276)
Q Consensus 165 l~R~~~ 170 (276)
+.|.-.
T Consensus 88 v~R~~~ 93 (106)
T 4amh_A 88 VAKPGS 93 (106)
T ss_dssp EECCSS
T ss_pred EEeCCC
Confidence 999654
No 212
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.03 E-value=1.2e-05 Score=57.40 Aligned_cols=57 Identities=25% Similarity=0.338 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
..++..|..++..|+|++|+..|++++...|++. .++++++.||..+|++++|+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~ 66 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA---EAWYNLGNAYYKQGDYDEAIEYY 66 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH---HHHHHHHHHHHHhCCHHHHHHHH
Confidence 4567889999999999999999999999999875 58999999999999999999865
No 213
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.02 E-value=9.7e-06 Score=72.30 Aligned_cols=60 Identities=22% Similarity=0.345 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 213 ERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 213 kqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
+.++.++..|+.+++.|+|++|+..|+++|..+|+. .+|++++.||.++|++++|+..++
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~la~~~~~~g~~~~A~~~~~ 63 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDP----VFYSNLSACYVSVGDLKKVVEMST 63 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccH----HHHHhHHHHHHHHhhHHHHHHHHH
Confidence 456678899999999999999999999999999963 689999999999999999998763
No 214
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.02 E-value=1e-05 Score=63.38 Aligned_cols=81 Identities=19% Similarity=0.323 Sum_probs=59.4
Q ss_pred ceEEEEecC----cceeEEeeeCC--CCeEEEEeCCCCCcccc-cCcccCCEEEEeecccCCcceecccchhHHHHhhcc
Q 023871 85 EEYEVEIEQ----PYGLKFAKGRD--GGTYIDAIAPGGSADKT-GMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR 157 (276)
Q Consensus 85 ~~y~V~l~K----PLGl~f~e~~d--Ggv~V~~v~~ggnA~k~-G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r 157 (276)
+...|+|.| ++|+.+..+.+ .+++|..|.++|.|+++ |.|++||+|+.+-.. .|= ...+-++...|+..
T Consensus 15 ~~~~v~l~k~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~---~v~-~~~~~~~~~~~~~~ 90 (119)
T 2cs5_A 15 NLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGR---DIA-EHTHDQVVLFIKAS 90 (119)
T ss_dssp CCEEEEECCCSSSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTB---CTT-SSCHHHHHHHHHHH
T ss_pred CeEEEEEEeCCCCCcCEEEecccCCCCCeEEEEECCCCHHHHhhcCCCCCCEEEEECCE---ECC-CCCHHHHHHHHHhc
Confidence 457788887 68999987643 37999999999999999 349999999998743 221 11344566666654
Q ss_pred c----CceEEEEeecC
Q 023871 158 V----GPLLMKMQKRY 169 (276)
Q Consensus 158 ~----gpv~L~l~R~~ 169 (276)
. .++.|.+.|..
T Consensus 91 ~~~~~~~v~l~v~R~~ 106 (119)
T 2cs5_A 91 CERHSGELMLLVRPNA 106 (119)
T ss_dssp HHCCSSCEEEEEECCC
T ss_pred cccCCCEEEEEEEccc
Confidence 2 48999998853
No 215
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.02 E-value=1.5e-05 Score=60.59 Aligned_cols=56 Identities=21% Similarity=0.388 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
-++..|..++..|+|++|+..|++++...|++. .++++++.||.++|++++|+..+
T Consensus 112 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 112 VRFRLGVALDNLGRFDEAIDSFKIALGLRPNEG---KVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcCccch---HHHHHHHHHHHHcCCHHHHHHHH
Confidence 346777888888888888888888888888774 57888888999999988888765
No 216
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=98.01 E-value=9.2e-06 Score=60.27 Aligned_cols=69 Identities=16% Similarity=0.331 Sum_probs=49.8
Q ss_pred cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc--ccCceEEEEeec
Q 023871 94 PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ--RVGPLLMKMQKR 168 (276)
Q Consensus 94 PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~--r~gpv~L~l~R~ 168 (276)
.+|+.+... .++++|..|.|++.|+++| |++||+|+.+-.. .+. ...+..+..+++. ...++.|.+.|.
T Consensus 18 ~lG~~~~~~-~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~---~v~-~~~~~~~~~~l~~~~~g~~v~l~v~R~ 88 (90)
T 2eaq_A 18 DFGFTIKWD-IPGIFVASVEAGSPAEFSQ-LQVDDEIIAINNT---KFS-YNDSKEWEEAMAKAQETGHLVMDVRRY 88 (90)
T ss_dssp CCSEEEEEE-TTEEEEEEECTTSHHHHTT-CCTTCEEEEETTE---ECC-TTCHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred cccEEEEec-CCCEEEEEECCCChHHHcC-CCCCCEEEEECCE---Ecc-CCCHHHHHHHHHhcCCCCEEEEEEEeC
Confidence 488888754 5689999999999999999 9999999998643 330 0233344445552 256789998874
No 217
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.01 E-value=7.8e-06 Score=63.31 Aligned_cols=81 Identities=20% Similarity=0.384 Sum_probs=60.6
Q ss_pred EEEEec----CcceeEEeeeCC-----------CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHH
Q 023871 87 YEVEIE----QPYGLKFAKGRD-----------GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTM 151 (276)
Q Consensus 87 y~V~l~----KPLGl~f~e~~d-----------Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~ 151 (276)
.+|+|. .+||+.+..+.+ .+++|..|.+++.|+++|.|++||+|+.+... .+-.. .+..++
T Consensus 11 ~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~---~v~~~-~~~~~~ 86 (111)
T 1uju_A 11 RELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQ---SLLGL-THGEAV 86 (111)
T ss_dssp SCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSC---BCTTS-CHHHHH
T ss_pred EEEEEEECCCCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECCCC-CHHHHH
Confidence 445554 468999986542 38999999999999999999999999997743 22211 455677
Q ss_pred HHhhcccCceEEEEeecCCC
Q 023871 152 YTIRQRVGPLLMKMQKRYGK 171 (276)
Q Consensus 152 ~air~r~gpv~L~l~R~~~~ 171 (276)
.+|+....++.|.+.|.+-.
T Consensus 87 ~~l~~~g~~v~l~v~r~~~~ 106 (111)
T 1uju_A 87 QLLRSVGDTLTVLVCDGFES 106 (111)
T ss_dssp HHHSSCSSEEEECCCCCCCC
T ss_pred HHHHcCCCeEEEEEEECCCC
Confidence 77877567889999987643
No 218
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=98.00 E-value=3.4e-05 Score=57.06 Aligned_cols=77 Identities=16% Similarity=0.296 Sum_probs=52.6
Q ss_pred ceEEEEecC---cceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-c-c
Q 023871 85 EEYEVEIEQ---PYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-V 158 (276)
Q Consensus 85 ~~y~V~l~K---PLGl~f~e~~d-Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-r-~ 158 (276)
+.++|+|.| .+|+.+....+ ++++|..| +++.|+ +| |++||+|+++... .+-.. .+..+...|+. . .
T Consensus 3 ~~~~v~l~k~~~g~G~~~~~~~~~~~~~v~~v-~~spA~-aG-l~~GD~I~~vng~---~v~~~-~~~~~~~~l~~~~~g 75 (88)
T 3bpu_A 3 ELITVHIVKGPMGFGFTIADSPGGGGQRVKQI-VDSPRS-RG-LKEGDLIVEVNKK---NVQAL-THNQVVDMLVESPKG 75 (88)
T ss_dssp EEEEEEEECBTTBSSCEEEECTTSSSEEEEEC-CC--CC-TT-CCTTCEEEEETTE---ECTTS-CHHHHHHHHHTSCTT
T ss_pred cEEEEEEEcCCCceeEEEEecCCCCcEEEEEe-cCChhH-hC-CCCCCEEEEECCE---EcCCC-CHHHHHHHHHhCCCC
Confidence 457788866 57888887644 58999887 899888 77 9999999998753 22111 13456666763 2 4
Q ss_pred CceEEEEeec
Q 023871 159 GPLLMKMQKR 168 (276)
Q Consensus 159 gpv~L~l~R~ 168 (276)
.++.|.+.|.
T Consensus 76 ~~v~l~v~R~ 85 (88)
T 3bpu_A 76 SEVTLLVQRQ 85 (88)
T ss_dssp CEEEEEEEEE
T ss_pred CEEEEEEEeC
Confidence 5789998874
No 219
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.00 E-value=8e-06 Score=70.37 Aligned_cols=88 Identities=13% Similarity=-0.022 Sum_probs=62.8
Q ss_pred hcCCCcchhHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---cCCCChhhH-HHHHHHHhHH
Q 023871 188 RNSGVISNRVREIQMQN--YMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVL---GSKPTPEES-SVASYNVACC 261 (276)
Q Consensus 188 r~~G~i~~al~Eiq~~n--Ykk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL---~i~P~~~e~-a~A~YN~AcC 261 (276)
...|++++++..++..- +.+.........-+..-|..++..|+|++|+..|++|| ...|++... ..+++|++.|
T Consensus 126 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~ 205 (293)
T 2qfc_A 126 LKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKA 205 (293)
T ss_dssp HTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHH
Confidence 35667777766655421 11111111123345688999999999999999999999 556766544 3789999999
Q ss_pred HHhcCChhHHHhhh
Q 023871 262 YSKLNQVPLLLALI 275 (276)
Q Consensus 262 yaKLgq~~eAI~aL 275 (276)
|.++|++++|+..+
T Consensus 206 y~~~~~y~~Al~~~ 219 (293)
T 2qfc_A 206 LYLDSRYEESLYQV 219 (293)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHHhhHHHHHHHH
Confidence 99999999999865
No 220
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.00 E-value=1.4e-05 Score=68.50 Aligned_cols=83 Identities=14% Similarity=0.031 Sum_probs=62.7
Q ss_pred HHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871 185 RAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS 263 (276)
Q Consensus 185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya 263 (276)
..-...|++++++..++. ..++... ..-+...|..+.+.|+|++|+..|++++.++|++. .+++|++.||.
T Consensus 225 ~~~~~~g~~~~A~~~~~~-----al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~l~~~~~ 296 (368)
T 1fch_A 225 VLFNLSGEYDKAVDCFTA-----ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI---RSRYNLGISCI 296 (368)
T ss_dssp HHHHHTTCHHHHHHHHHH-----HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHH-----HHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHH
Confidence 344466777777554443 3333322 34467888889999999999999999999999875 58999999999
Q ss_pred hcCChhHHHhhh
Q 023871 264 KLNQVPLLLALI 275 (276)
Q Consensus 264 KLgq~~eAI~aL 275 (276)
++|++++|+..+
T Consensus 297 ~~g~~~~A~~~~ 308 (368)
T 1fch_A 297 NLGAHREAVEHF 308 (368)
T ss_dssp HHTCHHHHHHHH
T ss_pred HCCCHHHHHHHH
Confidence 999999998875
No 221
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=97.99 E-value=1.6e-05 Score=59.79 Aligned_cols=72 Identities=22% Similarity=0.386 Sum_probs=55.0
Q ss_pred CcceeEEeee--CCC--CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceeccc--chhHHHHhhcccCceEEEEe
Q 023871 93 QPYGLKFAKG--RDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIRQRVGPLLMKMQ 166 (276)
Q Consensus 93 KPLGl~f~e~--~dG--gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~--~g~~~~air~r~gpv~L~l~ 166 (276)
.++|+.+... .++ +++|..|.+++.|+++| |++||+|+.+... +..+ +..+...|+....++.|.+.
T Consensus 14 ~~~G~~l~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~------~v~~~~~~~~~~~l~~~g~~v~l~v~ 86 (96)
T 2v90_A 14 QGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGE------SVEGLGHEETVSRIQGQGSCVSLTVV 86 (96)
T ss_dssp TBSCEEEEEEECTTSCEEEEEEEECTTSHHHHTT-CCTTEEEEEETTE------ECTTCCHHHHHHHHHTTTTEEEEEEE
T ss_pred CcccEEEEeccCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCE------ECCCCCHHHHHHHHHcCCCEEEEEEE
Confidence 4688888763 222 89999999999999999 9999999998753 2223 45667777765678899999
Q ss_pred ecCCC
Q 023871 167 KRYGK 171 (276)
Q Consensus 167 R~~~~ 171 (276)
|.-..
T Consensus 87 r~~~~ 91 (96)
T 2v90_A 87 DPEAD 91 (96)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 86443
No 222
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.99 E-value=1e-05 Score=70.93 Aligned_cols=56 Identities=16% Similarity=0.081 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.++..|..+++.|+|++|+..|++|+.++|++. .+|+|++.||.++|++++|+..+
T Consensus 69 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~ 124 (388)
T 1w3b_A 69 AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI---DGYINLAAALVAAGDMEGAVQAY 124 (388)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHSCSSHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchH---HHHHHHHHHHHHcCCHHHHHHHH
Confidence 356777777788888888888888888777764 35666666666666666666543
No 223
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=97.99 E-value=1.1e-05 Score=63.81 Aligned_cols=83 Identities=18% Similarity=0.299 Sum_probs=61.9
Q ss_pred ccceEEEEec----CcceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceeccc--chhHHHHhh
Q 023871 83 KYEEYEVEIE----QPYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIR 155 (276)
Q Consensus 83 ~~~~y~V~l~----KPLGl~f~e~~d-Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~--~g~~~~air 155 (276)
..+.++|+|. ..+|+.+....+ ++++|..|.+++.|+++|.|++||+|+++... +..+ +..+...|+
T Consensus 6 ~~~~~~v~l~~~~~~glG~~~~~~~~~~~~~V~~V~~~spA~~aGll~~GD~I~~ing~------~v~~~~~~~~~~~l~ 79 (127)
T 1b8q_A 6 EPNVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDR------PLVDLSYDSALEVLR 79 (127)
T ss_dssp CCCSEEEEEECTTTSCCSCCEEECTTSSCEEECCCSSSSSHHHHSSCCTTTCCCEETTE------ECSSSCHHHHHHHHH
T ss_pred CCceEEEEEEeCCCCcEeEEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCE------ECCCCCHHHHHHHHH
Confidence 3355777774 368888887644 59999999999999999966999999998742 2333 556677777
Q ss_pred ccc-CceEEEEeecCCC
Q 023871 156 QRV-GPLLMKMQKRYGK 171 (276)
Q Consensus 156 ~r~-gpv~L~l~R~~~~ 171 (276)
... .++.|.+.|.-..
T Consensus 80 ~~~g~~v~l~v~R~g~~ 96 (127)
T 1b8q_A 80 GIASETHVVLILRGPEG 96 (127)
T ss_dssp SCCSSCEEEEEECCCCS
T ss_pred hCCCCeEEEEEEeCCce
Confidence 543 5889999986543
No 224
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=97.99 E-value=1.5e-05 Score=58.78 Aligned_cols=77 Identities=23% Similarity=0.395 Sum_probs=54.8
Q ss_pred EEEEecC----cceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCc
Q 023871 87 YEVEIEQ----PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP 160 (276)
Q Consensus 87 y~V~l~K----PLGl~f~e~~--dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gp 160 (276)
++|+|.| ++|+.+..+. +.+++|..|.|++.|++++.+++||+|+.+... .+-. ..+.++...++...++
T Consensus 4 ~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~~agl~~GD~I~~vng~---~v~~-~~~~~~~~~~~~~~~~ 79 (87)
T 4e34_A 4 RKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGV---NLRD-TKHKEAVTILSQQRGE 79 (87)
T ss_dssp EEEEEECCTTBCCCEEEEEEGGGTEEEEEEEECTTSHHHHHSCCCTTEEEEEETTE---ECTT-CCHHHHHHHHHHCCSE
T ss_pred EEEEEEECCCCcccEEEEccCCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCE---ECCC-CCHHHHHHHHHcCCCe
Confidence 5666665 6888887653 237999999999999995339999999998742 3311 1334566677765667
Q ss_pred eEEEEee
Q 023871 161 LLMKMQK 167 (276)
Q Consensus 161 v~L~l~R 167 (276)
+.|++++
T Consensus 80 v~l~v~~ 86 (87)
T 4e34_A 80 IEFEVVY 86 (87)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8888764
No 225
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=97.99 E-value=7.5e-06 Score=61.16 Aligned_cols=78 Identities=18% Similarity=0.350 Sum_probs=56.2
Q ss_pred EEEEecC---cceeEEeeeC-CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceE
Q 023871 87 YEVEIEQ---PYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL 162 (276)
Q Consensus 87 y~V~l~K---PLGl~f~e~~-dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~ 162 (276)
..|+|.| ++|+.+.... ..+++|..|.|++.|+++| |++||+|+.+... .+- ...+..+...|+....++.
T Consensus 5 r~v~l~k~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~---~v~-~~~~~~~~~~l~~~g~~v~ 79 (91)
T 2vsp_A 5 KLCRLAKGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAG-LEDEDVIIEVNGV---NVL-DEPYEKVVDRIQSSGKNVT 79 (91)
T ss_dssp EEEEEECBTTBTSCCCBCCTTCSCCBC-CCCTTSHHHHTT-CCTTCEEEEETTE---ECT-TSCHHHHHHHHTTSCSEEE
T ss_pred EEEEEEeCCCcccEEEEeccCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCE---ECC-CCCHHHHHHHHHcCCCEEE
Confidence 4566665 4788886643 3589999999999999999 9999999998743 221 1145567777776667889
Q ss_pred EEEeecC
Q 023871 163 MKMQKRY 169 (276)
Q Consensus 163 L~l~R~~ 169 (276)
|.+.|.-
T Consensus 80 l~v~r~~ 86 (91)
T 2vsp_A 80 LLVCGKK 86 (91)
T ss_dssp EEEEC--
T ss_pred EEEEeCC
Confidence 9998853
No 226
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.98 E-value=5.7e-06 Score=71.28 Aligned_cols=90 Identities=10% Similarity=0.093 Sum_probs=64.5
Q ss_pred HhhcCCCcchhHHHHHH--HHHhhH-HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh---hHHHHHHHHh
Q 023871 186 AERNSGVISNRVREIQM--QNYMKK-KEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE---ESSVASYNVA 259 (276)
Q Consensus 186 ~~r~~G~i~~al~Eiq~--~nYkk~-Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~---e~a~A~YN~A 259 (276)
.-...|++++|+..++. ..+++. ........-.++-|..+++.|+|++|+..|++||++.++.. ..+.+|+|++
T Consensus 164 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 243 (293)
T 3u3w_A 164 IYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRG 243 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 34467777777666555 112211 11112223457999999999999999999999998876542 2378999999
Q ss_pred HHHHhcCC-hhHHHhhh
Q 023871 260 CCYSKLNQ-VPLLLALI 275 (276)
Q Consensus 260 cCyaKLgq-~~eAI~aL 275 (276)
.||.++|+ +++|++.+
T Consensus 244 ~~~~~~g~~~~~A~~~~ 260 (293)
T 3u3w_A 244 ECLRKLEYEEAEIEDAY 260 (293)
T ss_dssp HHHHHTTCCHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHH
Confidence 99999995 69998765
No 227
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=97.97 E-value=2.8e-05 Score=65.36 Aligned_cols=83 Identities=12% Similarity=0.204 Sum_probs=60.6
Q ss_pred ccceEEEEecC---cceeEEeeeCC----CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcc--eecccchhHHHH
Q 023871 83 KYEEYEVEIEQ---PYGLKFAKGRD----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEI--WPAAEYGRTMYT 153 (276)
Q Consensus 83 ~~~~y~V~l~K---PLGl~f~e~~d----Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdev--w~a~~~g~~~~a 153 (276)
+-++++|+|.| +||+.+..+.+ .++||..|.|++-|+++|.|++||+|+.+... .+ |... .-.++.+
T Consensus 16 ~~~~~~v~~~~~~~~lG~~i~~g~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~---~v~~~~~~-~~~~~~~ 91 (206)
T 3r0h_A 16 PNKKILIELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGT---PIHVGSMT-TLKVHQL 91 (206)
T ss_dssp TTSCEEEEEECTTSCCCEEEECCSSSSCCSCEEEEEECTTSHHHHHCCCCTTCEEEEETTE---ECCGGGSC-HHHHHHH
T ss_pred CCCEEEEEEEeCCCCcCEEEecccCCCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCE---EcCCCccC-HHHHHHH
Confidence 34667788855 89999976543 37999999999999999999999999998743 22 2232 2344556
Q ss_pred hhcccCc-eEEEEeecC
Q 023871 154 IRQRVGP-LLMKMQKRY 169 (276)
Q Consensus 154 ir~r~gp-v~L~l~R~~ 169 (276)
++...+. +.|.+.|.-
T Consensus 92 ~~~~~~~~v~l~v~R~~ 108 (206)
T 3r0h_A 92 FHTTYEKAVTLTVFRAD 108 (206)
T ss_dssp HHSCCSSEEEEEEECCS
T ss_pred HHhcCCCceEEEEEecc
Confidence 6665555 888888753
No 228
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=97.97 E-value=2.6e-05 Score=60.70 Aligned_cols=79 Identities=23% Similarity=0.340 Sum_probs=57.7
Q ss_pred ceEEEEec----CcceeEEeee-CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccC
Q 023871 85 EEYEVEIE----QPYGLKFAKG-RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG 159 (276)
Q Consensus 85 ~~y~V~l~----KPLGl~f~e~-~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~g 159 (276)
..|.+.|. +.+|+.+.-. ...+++|..|.+++.|+++| |++||+|+.+... .+-. ..+..+...|+....
T Consensus 13 dp~~~~l~~~~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~---~v~~-~~~~~~~~~l~~~g~ 87 (114)
T 2edz_A 13 NPRECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGV---FVDK-EEHAQVVELVRKSGN 87 (114)
T ss_dssp CCEEEEEECCTTCCCSCEEECCTTCCSCEEECCCTTCTTGGGT-CCTTCEEEEESSS---BCSS-SCHHHHHHHHHHTCS
T ss_pred CCEEEEEeCCCCCcccEEEEEecCCCCeEEEEeCCCChHHHcC-CCCCCEEEEECCE---ECCC-CCHHHHHHHHHcCCC
Confidence 33555554 4678877654 34599999999999999999 9999999998743 3322 224556667765567
Q ss_pred ceEEEEeec
Q 023871 160 PLLMKMQKR 168 (276)
Q Consensus 160 pv~L~l~R~ 168 (276)
++.|.+.|.
T Consensus 88 ~v~l~v~R~ 96 (114)
T 2edz_A 88 SVTLLVLDG 96 (114)
T ss_dssp EEEEEEECH
T ss_pred EEEEEEEEC
Confidence 889999883
No 229
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=97.97 E-value=9.8e-06 Score=61.01 Aligned_cols=75 Identities=23% Similarity=0.502 Sum_probs=57.2
Q ss_pred EEEEe--cCcceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccc--hhHHHHhhcccCc
Q 023871 87 YEVEI--EQPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY--GRTMYTIRQRVGP 160 (276)
Q Consensus 87 y~V~l--~KPLGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~--g~~~~air~r~gp 160 (276)
+.|++ ..++|+.+..+.+ .+++|..|.+++.|+++| |++||+|+.+-.. +...+ ..+...|+....+
T Consensus 8 ~~~~~~~~~~lG~~l~~g~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~------~v~~~~~~~~~~~l~~~~~~ 80 (94)
T 1vb7_A 8 LTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQ------SAENMLHAEAQSKIRQSASP 80 (94)
T ss_dssp EEEEECSSSCCSBCCEEETTTTEEEECCCBCTTSSHHHHT-CCTTCEEEEETTE------ECTTCCHHHHHHHHHTCCSS
T ss_pred EEEEecCCCCccEEEecccCCCCCeEEEEECCCCHHHHCC-CCCCCEEEEECCE------ECCCCCHHHHHHHHHhCCCc
Confidence 45555 4568888877644 389999999999999999 9999999998653 22333 5566777765588
Q ss_pred eEEEEeec
Q 023871 161 LLMKMQKR 168 (276)
Q Consensus 161 v~L~l~R~ 168 (276)
+.|.+.|.
T Consensus 81 v~l~v~R~ 88 (94)
T 1vb7_A 81 LRLQLDRS 88 (94)
T ss_dssp EEEEEECC
T ss_pred EEEEEEEC
Confidence 99999985
No 230
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.97 E-value=2.1e-05 Score=56.27 Aligned_cols=81 Identities=22% Similarity=0.263 Sum_probs=60.6
Q ss_pred hhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhc
Q 023871 187 ERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL 265 (276)
Q Consensus 187 ~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKL 265 (276)
-...|++++++..++. ..++... ..-++..|..++..|+|++|+..|++++...|++. .++++++.||.++
T Consensus 45 ~~~~~~~~~A~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~ 116 (136)
T 2fo7_A 45 YYKQGDYDEAIEYYQK-----ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA---EAWYNLGNAYYKQ 116 (136)
T ss_dssp HHHHTCHHHHHHHHHH-----HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHTT
T ss_pred HHHhcCHHHHHHHHHH-----HHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHH
Confidence 3355666666555443 2222211 23356778888999999999999999999999875 5899999999999
Q ss_pred CChhHHHhhh
Q 023871 266 NQVPLLLALI 275 (276)
Q Consensus 266 gq~~eAI~aL 275 (276)
|++++|+..+
T Consensus 117 ~~~~~A~~~~ 126 (136)
T 2fo7_A 117 GDYDEAIEYY 126 (136)
T ss_dssp TCHHHHHHHH
T ss_pred ccHHHHHHHH
Confidence 9999998875
No 231
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.97 E-value=1.2e-05 Score=67.15 Aligned_cols=56 Identities=13% Similarity=0.002 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
-+...|..+++.|+|++|+..|+++++++|++. .+|++++.||.++|++++|+..+
T Consensus 238 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~ 293 (330)
T 3hym_B 238 LLNNLGHVCRKLKKYAEALDYHRQALVLIPQNA---STYSAIGYIHSLMGNFENAVDYF 293 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCS---HHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhCccch---HHHHHHHHHHHHhccHHHHHHHH
Confidence 456888899999999999999999999999985 68999999999999999999876
No 232
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=97.96 E-value=2.6e-05 Score=61.45 Aligned_cols=72 Identities=17% Similarity=0.203 Sum_probs=54.1
Q ss_pred cceeEEeeeCCC--CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeecC
Q 023871 94 PYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRY 169 (276)
Q Consensus 94 PLGl~f~e~~dG--gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~~ 169 (276)
.+|+.+..+.+. +++|..|.+++.|+++|.|++||+|+++... .+ ....+..+...|+...+.+.|.+.+..
T Consensus 37 ~lG~~l~~~~~~~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~---~v-~~~~~~~~~~~l~~~~~~v~l~v~~~~ 110 (114)
T 2gzv_A 37 LIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGR---SI-KGKTKVEVAKMIQEVKGEVTIHYNKLQ 110 (114)
T ss_dssp CCSEEEEECCC--CCEEEEEECTTSHHHHHCCCCTTCEEEEETTE---EC-TTCCHHHHHHHHHHCCSEEEEEEECCC
T ss_pred cEeEEEEeCCCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCE---EC-CCCCHHHHHHHHHcCCCeEEEEEEecc
Confidence 389999876543 7999999999999999999999999998742 33 013445666777765677888887643
No 233
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=97.96 E-value=1.5e-05 Score=67.64 Aligned_cols=76 Identities=25% Similarity=0.434 Sum_probs=59.5
Q ss_pred ceEEEEecC----cceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceeccc--chhHHHHhhc
Q 023871 85 EEYEVEIEQ----PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIRQ 156 (276)
Q Consensus 85 ~~y~V~l~K----PLGl~f~e~~--dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~--~g~~~~air~ 156 (276)
+..+|+|.| ++|+.+..+. ++++||..|.|||.|+++| +++||+|+.+... +..+ +..++..|+.
T Consensus 84 ~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~aG-L~~GD~Il~vng~------~v~~~~~~~~~~~l~~ 156 (192)
T 3k1r_A 84 KLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVG-LQVGDEIVRINGY------SISSCTHEEVINLIRT 156 (192)
T ss_dssp SCEEEEEETTSTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTEEEEEETTE------ECTTCCHHHHHHHHTS
T ss_pred ceEEEEEEeCCCCceeEEEEcccccCCCEEEEEECCCChHHHcC-CCCCCEEEEECCE------ECCCCCHHHHHHHHcC
Confidence 446778765 5888887553 3489999999999999999 9999999998742 2223 4567778888
Q ss_pred ccCceEEEEeec
Q 023871 157 RVGPLLMKMQKR 168 (276)
Q Consensus 157 r~gpv~L~l~R~ 168 (276)
.+++.|++.|.
T Consensus 157 -~~~v~l~v~r~ 167 (192)
T 3k1r_A 157 -EKTVSIKVRHI 167 (192)
T ss_dssp -SSEEEEEEEEC
T ss_pred -CCeEEEEEEEC
Confidence 78899999884
No 234
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.96 E-value=2.5e-05 Score=59.31 Aligned_cols=84 Identities=12% Similarity=0.122 Sum_probs=65.8
Q ss_pred HHHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHH
Q 023871 184 IRAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY 262 (276)
Q Consensus 184 ~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCy 262 (276)
...-...|++++++..++. ..++... ..-++..|..++..|+|++|+..|++++.+.|++. .++++++.||
T Consensus 49 ~~~~~~~~~~~~A~~~~~~-----~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~a~~~ 120 (186)
T 3as5_A 49 GIAYVKTGAVDRGTELLER-----SLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINF---NVRFRLGVAL 120 (186)
T ss_dssp HHHHHHTTCHHHHHHHHHH-----HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH-----HHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhH---HHHHHHHHHH
Confidence 3455578888888655544 3333222 33456888999999999999999999999999875 6899999999
Q ss_pred HhcCChhHHHhhh
Q 023871 263 SKLNQVPLLLALI 275 (276)
Q Consensus 263 aKLgq~~eAI~aL 275 (276)
.++|++++|+..+
T Consensus 121 ~~~~~~~~A~~~~ 133 (186)
T 3as5_A 121 DNLGRFDEAIDSF 133 (186)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCcHHHHHHHH
Confidence 9999999999876
No 235
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=97.96 E-value=1.5e-05 Score=62.38 Aligned_cols=85 Identities=18% Similarity=0.266 Sum_probs=60.6
Q ss_pred ccccceEEEEecC----cceeEEeeeCC---CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHH
Q 023871 81 EEKYEEYEVEIEQ----PYGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYT 153 (276)
Q Consensus 81 ~~~~~~y~V~l~K----PLGl~f~e~~d---Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~a 153 (276)
+...+.+.|.|.| ++|+.+..+.+ .+++|..|.|++.|+++|.|++||+|+.+-.. .|- ...+-.++..
T Consensus 11 ~~~~~~~~v~l~~~~~~~lG~~i~g~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~---~v~-~~~~~~~~~~ 86 (119)
T 1x6d_A 11 KQLDGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGK---SLK-GTTHHDALAI 86 (119)
T ss_dssp SSCTTEEEEEEECCTTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTE---ECS-SCCHHHHHHH
T ss_pred CCCCCeEEEEEEeCCCCccCEEEeCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCE---ECC-CCCHHHHHHH
Confidence 3344567777766 68999977643 48999999999999999999999999997642 221 1134566677
Q ss_pred hhcccCce-EEEEeecC
Q 023871 154 IRQRVGPL-LMKMQKRY 169 (276)
Q Consensus 154 ir~r~gpv-~L~l~R~~ 169 (276)
|+...+.+ .|.+.|..
T Consensus 87 l~~~~~~~~~l~v~R~~ 103 (119)
T 1x6d_A 87 LRQAREPRQAVIVTRKL 103 (119)
T ss_dssp HHHTTSSSEEEEEEECC
T ss_pred HHhCCCCeEEEEEEcCC
Confidence 77555555 46676643
No 236
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.95 E-value=3.3e-05 Score=63.97 Aligned_cols=92 Identities=14% Similarity=0.074 Sum_probs=69.7
Q ss_pred HHHhhcCCCcchhHHHHHHH--HHhhHH--HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-----CChhhHHHH
Q 023871 184 IRAERNSGVISNRVREIQMQ--NYMKKK--EQKERREQDLREGLQLYRTGKYEVAREKFESVLGSK-----PTPEESSVA 254 (276)
Q Consensus 184 ~~~~r~~G~i~~al~Eiq~~--nYkk~K--elkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~-----P~~~e~a~A 254 (276)
...-...|++++++..++.. .+.+.. .-.....-+...|..++..|+|++|+..|++|+.+. ++.+....+
T Consensus 34 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 113 (311)
T 3nf1_A 34 VIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAAT 113 (311)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHH
Confidence 34555889999997776662 222211 122333456788999999999999999999999874 555556789
Q ss_pred HHHHhHHHHhcCChhHHHhhh
Q 023871 255 SYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 255 ~YN~AcCyaKLgq~~eAI~aL 275 (276)
++|++.||..+|++++|+..+
T Consensus 114 ~~~l~~~~~~~g~~~~A~~~~ 134 (311)
T 3nf1_A 114 LNNLAVLYGKRGKYKEAEPLC 134 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999876
No 237
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=97.95 E-value=2e-05 Score=59.48 Aligned_cols=74 Identities=18% Similarity=0.416 Sum_probs=54.1
Q ss_pred EEEEecC---cceeEEeeeC-CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceeccc--chhHHHHhhcccCc
Q 023871 87 YEVEIEQ---PYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIRQRVGP 160 (276)
Q Consensus 87 y~V~l~K---PLGl~f~e~~-dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~--~g~~~~air~r~gp 160 (276)
..|+|.| .+|+.+.... .++++|..|.+++.|+++| |++||+|+.+... +... +..+...|+...+.
T Consensus 11 ~~~~l~~~~~g~G~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~------~v~~~~~~~~~~~l~~~~~~ 83 (98)
T 2jxo_A 11 RLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGV------CMEGKQHGDVVSAIRAGGDE 83 (98)
T ss_dssp EEEEEECTTTCCCEEEECCCSSSCEEEEEECTTSHHHHHT-CCTTCEEEEETTE------ECTTCCHHHHHHHHHTTTTE
T ss_pred EEEEEEeCCCcccEEEEecCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE------ECCCCCHHHHHHHHHhCCCc
Confidence 3455554 4788887654 3599999999999999999 9999999998753 2333 55667777765554
Q ss_pred e-EEEEee
Q 023871 161 L-LMKMQK 167 (276)
Q Consensus 161 v-~L~l~R 167 (276)
+ .|.+.|
T Consensus 84 ~~~l~v~R 91 (98)
T 2jxo_A 84 TKLLVVDR 91 (98)
T ss_dssp EEEEECCH
T ss_pred EEEEEEEC
Confidence 4 577766
No 238
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.95 E-value=9.5e-06 Score=62.07 Aligned_cols=80 Identities=14% Similarity=0.305 Sum_probs=58.2
Q ss_pred EEEEecC---cceeEEeeeC-CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceE
Q 023871 87 YEVEIEQ---PYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL 162 (276)
Q Consensus 87 y~V~l~K---PLGl~f~e~~-dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~ 162 (276)
..|+|.| ++|+.+.... +.+++|..|.+++.|+++| |++||+|+.+... .+ ....+..+...++...+++.
T Consensus 10 r~v~l~k~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~vng~---~v-~~~~~~~~~~~~~~~~~~v~ 84 (106)
T 2eei_A 10 RLCYLVKEGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAG-VLADDHLIEVNGE---NV-EDASHEEVVEKVKKSGSRVM 84 (106)
T ss_dssp EEEEEECCSSSCSCCEECCSSCCSCEECCCCTTSHHHHHT-CCSSEEEEEETTE---EC-TTCCHHHHHHHHHHHCSEEE
T ss_pred EEEEEEECCCCCCEEEEeccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---EC-CCCCHHHHHHHHHhCCCeEE
Confidence 4566665 5788886543 4599999999999999999 9999999998642 22 11123455566665567889
Q ss_pred EEEeecCCC
Q 023871 163 MKMQKRYGK 171 (276)
Q Consensus 163 L~l~R~~~~ 171 (276)
|.+.|+...
T Consensus 85 l~v~r~~~~ 93 (106)
T 2eei_A 85 FLLVDKETD 93 (106)
T ss_dssp EEECCTTTS
T ss_pred EEEEcCchh
Confidence 999887654
No 239
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.95 E-value=3.2e-05 Score=61.39 Aligned_cols=80 Identities=19% Similarity=0.393 Sum_probs=57.4
Q ss_pred EEEEec--CcceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceE
Q 023871 87 YEVEIE--QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL 162 (276)
Q Consensus 87 y~V~l~--KPLGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~ 162 (276)
+.|++. .++|+.+....+ .+++|..|.+++.|+++| |++||+|+.+... .+-.... -.++..++. ..++.
T Consensus 24 v~v~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~---~v~~~~~-~~~~~~~~~-~~~v~ 97 (128)
T 1uf1_A 24 VNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSG-LKVGDQILEVNGR---SFLNILH-DEAVRLLKS-SRHLI 97 (128)
T ss_dssp EEEECCSSCCCCEEEECCTTTTCCCEEEEECTTCHHHHHT-CCTTCEEEEETTE---ECSSCCH-HHHHHHHTT-CSEEE
T ss_pred EEEEECCCCccCEEEECcccCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCE---ECCCCCH-HHHHHHHhc-CCeEE
Confidence 444444 579999877543 389999999999999999 9999999998753 3322222 345666665 46899
Q ss_pred EEEeecCCCc
Q 023871 163 MKMQKRYGKM 172 (276)
Q Consensus 163 L~l~R~~~~~ 172 (276)
|.+.|.--..
T Consensus 98 l~v~R~g~~~ 107 (128)
T 1uf1_A 98 LTVKDVGRLP 107 (128)
T ss_dssp EEEECCSCCS
T ss_pred EEEEECCccc
Confidence 9998854433
No 240
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=97.95 E-value=1.1e-05 Score=61.76 Aligned_cols=71 Identities=25% Similarity=0.384 Sum_probs=52.6
Q ss_pred CcceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeec
Q 023871 93 QPYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR 168 (276)
Q Consensus 93 KPLGl~f~e~~d-Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~ 168 (276)
.++|+.+.-..+ ++++|..|.|++.|+++| +++||+|+.+... .+-.. ..-.+...|+....++.|.+.|.
T Consensus 13 ~~~G~~l~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~---~v~~~-~~~~~~~~l~~~g~~v~l~v~r~ 84 (106)
T 3ngh_A 13 QNYGFFLRIEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGV---FVDKE-EHAQVVELVRKSGNSVTLLVLDG 84 (106)
T ss_dssp CCCCCEEECCTTCCSCEEECCCTTSHHHHTT-CCTTCEEEEETTE---ECTTS-CHHHHHHHHHHTTTEEEEEEECH
T ss_pred CeeCEEEEEEeCCCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCE---ECCCC-CHHHHHHHHHhCCCEEEEEEEEC
Confidence 367887776544 489999999999999999 9999999998742 22111 12356667775567889999884
No 241
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.95 E-value=3.2e-05 Score=53.59 Aligned_cols=74 Identities=22% Similarity=0.227 Sum_probs=57.5
Q ss_pred HHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871 185 RAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS 263 (276)
Q Consensus 185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya 263 (276)
..-...|++++++..++. +.++... ..-++..|..+++.|+|++|+..|+++++++|++. .+++|++.+|.
T Consensus 17 ~~~~~~~~~~~A~~~~~~-----a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~ 88 (91)
T 1na3_A 17 NAYYKQGDYDEAIEYYQK-----ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA---EAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHTTCHHHHHHHHHH-----HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHH-----HHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHH
Confidence 344577888888665554 3333322 34567899999999999999999999999999985 58999999998
Q ss_pred hcC
Q 023871 264 KLN 266 (276)
Q Consensus 264 KLg 266 (276)
++|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 765
No 242
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.94 E-value=2.5e-05 Score=55.82 Aligned_cols=80 Identities=21% Similarity=0.257 Sum_probs=61.9
Q ss_pred hcCCCcchhHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcC
Q 023871 188 RNSGVISNRVREIQMQNYMKKKEQKE-RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN 266 (276)
Q Consensus 188 r~~G~i~~al~Eiq~~nYkk~Kelkk-qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLg 266 (276)
...|++++++..++.. .+... ....++..|..++..|+|++|+..|++++.+.|++. .++++++.||..+|
T Consensus 12 ~~~~~~~~A~~~~~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 12 YKQGDYDEAIEYYQKA-----LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA---EAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHTCHHHHHHHHHHH-----HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHTTT
T ss_pred HHcCcHHHHHHHHHHH-----HHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch---HHHHHHHHHHHHhc
Confidence 3567777776665542 22211 123356778888999999999999999999999875 58999999999999
Q ss_pred ChhHHHhhh
Q 023871 267 QVPLLLALI 275 (276)
Q Consensus 267 q~~eAI~aL 275 (276)
++++|+..+
T Consensus 84 ~~~~A~~~~ 92 (136)
T 2fo7_A 84 DYDEAIEYY 92 (136)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999999876
No 243
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=97.94 E-value=2.9e-05 Score=63.97 Aligned_cols=82 Identities=23% Similarity=0.430 Sum_probs=58.3
Q ss_pred cceEEEEec---CcceeEEeeeC-------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHH
Q 023871 84 YEEYEVEIE---QPYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYT 153 (276)
Q Consensus 84 ~~~y~V~l~---KPLGl~f~e~~-------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~a 153 (276)
++..+|+|. .+||+.+.-+. +.++||..|.|++-|+++|.|++||+|+++... .+..... -..+.+
T Consensus 4 ~~~~~v~l~~~~~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~---~v~~~~~-~~~~~~ 79 (196)
T 3gsl_A 4 MEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEV---DVREVTH-SAAVEA 79 (196)
T ss_dssp EEEEEEEEECBTTBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTE---ECTTCCH-HHHHHH
T ss_pred cEEEEEEEEECCCCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCE---ECCCCCH-HHHHHH
Confidence 355666666 58999998764 359999999999999999999999999998753 2222111 133445
Q ss_pred hhcccCceEEEEeecC
Q 023871 154 IRQRVGPLLMKMQKRY 169 (276)
Q Consensus 154 ir~r~gpv~L~l~R~~ 169 (276)
++.-..++.|.+.|..
T Consensus 80 ~~~~g~~v~l~v~r~~ 95 (196)
T 3gsl_A 80 LKEAGSIVRLYVMRRK 95 (196)
T ss_dssp HHTSCSEEEEEEEEEC
T ss_pred HHhCCCcEEEEEEecC
Confidence 5554566788877754
No 244
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.93 E-value=1.1e-05 Score=61.29 Aligned_cols=78 Identities=21% Similarity=0.430 Sum_probs=55.6
Q ss_pred ceEEEEecC-----cceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc
Q 023871 85 EEYEVEIEQ-----PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR 157 (276)
Q Consensus 85 ~~y~V~l~K-----PLGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r 157 (276)
+..+|+|.| .+|+.+....+ .+++|..|.+++.|+++| |++||+|+.+... .+-.... -.++..++.
T Consensus 8 ~~~~v~l~~~~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~---~v~~~~~-~~~~~~~~~- 81 (101)
T 1uez_A 8 EVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDK---SLARVTH-AEAVKALKG- 81 (101)
T ss_dssp CCEEECCCCCCTTTCSSEEEEECTTTTCCEEEEEECTTSHHHHHT-CCSSCCEEEETTE---ECSSCCH-HHHHHHSSS-
T ss_pred ccEEEEEEECCCCCcccEEEeCCCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECCCcCH-HHHHHhhcC-
Confidence 345566655 68999987643 489999999999999999 9999999998753 2222222 234444443
Q ss_pred cCceEEEEeec
Q 023871 158 VGPLLMKMQKR 168 (276)
Q Consensus 158 ~gpv~L~l~R~ 168 (276)
..++.|++.|.
T Consensus 82 ~~~v~l~v~R~ 92 (101)
T 1uez_A 82 SKKLVLSVYSA 92 (101)
T ss_dssp SSSCCEEECCC
T ss_pred CCeEEEEEEEC
Confidence 45789999874
No 245
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.93 E-value=7.6e-06 Score=67.33 Aligned_cols=85 Identities=15% Similarity=0.108 Sum_probs=65.4
Q ss_pred HhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH-HHHHHHHhHHHH
Q 023871 186 AERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES-SVASYNVACCYS 263 (276)
Q Consensus 186 ~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~-a~A~YN~AcCya 263 (276)
.-...|++++++..+ +++.++... .+.++..|..++..|+|++|+..|+++++ .|++... ..+|++++.||.
T Consensus 12 ~~~~~~~~~~A~~~~-----~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVF-----NKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHTTTCHHHHHHHH-----HHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHH-----HHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHH
Confidence 334778888885544 444444433 24578999999999999999999999999 5555444 778999999999
Q ss_pred hcCChhHHHhhhC
Q 023871 264 KLNQVPLLLALIE 276 (276)
Q Consensus 264 KLgq~~eAI~aLE 276 (276)
.+|++++|+..++
T Consensus 86 ~~~~~~~A~~~~~ 98 (272)
T 3u4t_A 86 KKGQDSLAIQQYQ 98 (272)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcccHHHHHHHHH
Confidence 9999999998763
No 246
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.92 E-value=4.3e-05 Score=63.21 Aligned_cols=86 Identities=9% Similarity=-0.011 Sum_probs=67.4
Q ss_pred HHhhcCCCcchhHHHHHHHHHhhHHHH---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-----CChhh
Q 023871 185 RAERNSGVISNRVREIQMQNYMKKKEQ---------KERREQDLREGLQLYRTGKYEVAREKFESVLGSK-----PTPEE 250 (276)
Q Consensus 185 ~~~r~~G~i~~al~Eiq~~nYkk~Kel---------kkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~-----P~~~e 250 (276)
..-...|++++++..++. +.++ .....-+...|..++..|+|++|+..|++++.+. ++...
T Consensus 77 ~~~~~~g~~~~A~~~~~~-----al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 151 (311)
T 3nf1_A 77 LVYRDQNKYKDAANLLND-----ALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD 151 (311)
T ss_dssp HHHHHTTCHHHHHHHHHH-----HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHCCCHHHHHHHHHH-----HHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 444577888888666554 3333 2233456788999999999999999999999875 55566
Q ss_pred HHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 251 SSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 251 ~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
...+++|+|.||..+|++++|++.+
T Consensus 152 ~~~~~~~la~~~~~~~~~~~A~~~~ 176 (311)
T 3nf1_A 152 VAKQLNNLALLCQNQGKYEEVEYYY 176 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6789999999999999999999876
No 247
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.92 E-value=3.2e-05 Score=60.91 Aligned_cols=54 Identities=24% Similarity=0.265 Sum_probs=23.7
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871 220 REGLQLYRT-GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 220 ~eGnaLfk~-grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a 274 (276)
..|..++.. |+|++|+..|++++. .|.++....++++++.||.++|++++|+..
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 135 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAY 135 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444444444 555555555555554 222211123444444444444444444443
No 248
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.92 E-value=3.3e-05 Score=60.86 Aligned_cols=83 Identities=13% Similarity=0.024 Sum_probs=66.0
Q ss_pred HHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871 185 RAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS 263 (276)
Q Consensus 185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya 263 (276)
..-...|++++++..++. ..++... ..-++..|..++..|+|++|+..|++++.++|++. .++++++.||.
T Consensus 16 ~~~~~~~~~~~A~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~l~~~~~ 87 (225)
T 2vq2_A 16 MEYMRGQDYRQATASIED-----ALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA---EINNNYGWFLC 87 (225)
T ss_dssp HHHHHTTCHHHHHHHHHH-----HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHH-----HHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh---HHHHHHHHHHH
Confidence 344477888888666554 3333222 34466889999999999999999999999999885 58999999999
Q ss_pred hc-CChhHHHhhh
Q 023871 264 KL-NQVPLLLALI 275 (276)
Q Consensus 264 KL-gq~~eAI~aL 275 (276)
.+ |++++|+..+
T Consensus 88 ~~~~~~~~A~~~~ 100 (225)
T 2vq2_A 88 GRLNRPAESMAYF 100 (225)
T ss_dssp TTTCCHHHHHHHH
T ss_pred HhcCcHHHHHHHH
Confidence 99 9999999875
No 249
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.91 E-value=4e-05 Score=62.46 Aligned_cols=55 Identities=16% Similarity=0.086 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHc--CCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLG--SKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~--i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
++..|..++..|+|++|+..|++++. ..|++ ..++++++.||.++|++++|+..+
T Consensus 108 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~ 164 (252)
T 2ho1_A 108 LNNYGGFLYEQKRYEEAYQRLLEASQDTLYPER---SRVFENLGLVSLQMKKPAQAKEYF 164 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTH---HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhCccCccc---HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34555566666666666666666666 34433 345666666666666666666554
No 250
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.91 E-value=9e-06 Score=64.01 Aligned_cols=79 Identities=15% Similarity=0.075 Sum_probs=59.7
Q ss_pred cCCCcchhHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHH-HHhcC
Q 023871 189 NSGVISNRVREIQMQNYMKKKEQKE-RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACC-YSKLN 266 (276)
Q Consensus 189 ~~G~i~~al~Eiq~~nYkk~Kelkk-qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcC-yaKLg 266 (276)
..|++++++..++. +.++.. ..+.++..|..++..|+|++|+..|++|+.++|++. .++++++.| |.+.|
T Consensus 22 ~~~~~~~A~~~~~~-----al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~l~~~~~ 93 (177)
T 2e2e_A 22 SQQNPEAQLQALQD-----KIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA---ELYAALATVLYYQAS 93 (177)
T ss_dssp -----CCCCHHHHH-----HHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCH---HHHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHH-----HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhcC
Confidence 46777888665554 222222 134577899999999999999999999999999985 589999999 88999
Q ss_pred Ch--hHHHhhh
Q 023871 267 QV--PLLLALI 275 (276)
Q Consensus 267 q~--~eAI~aL 275 (276)
++ ++|+..+
T Consensus 94 ~~~~~~A~~~~ 104 (177)
T 2e2e_A 94 QHMTAQTRAMI 104 (177)
T ss_dssp TCCCHHHHHHH
T ss_pred CcchHHHHHHH
Confidence 98 9998876
No 251
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=97.91 E-value=2.9e-05 Score=59.46 Aligned_cols=79 Identities=19% Similarity=0.327 Sum_probs=57.1
Q ss_pred ceEEEEecC----cceeEEeeeCC--CCeEEEEeCCCCCcccccC-cccCCEEEEeecccCCcceecccchhHHHHhhcc
Q 023871 85 EEYEVEIEQ----PYGLKFAKGRD--GGTYIDAIAPGGSADKTGM-FQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR 157 (276)
Q Consensus 85 ~~y~V~l~K----PLGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~-i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r 157 (276)
....|+|.| ++|+.+.-+.+ .+++|..|.|++.|+++|. |++||+|+.+... .+-.. ..-++...|+..
T Consensus 17 ~~~~v~l~~~~~~~~G~~~~gg~~~~~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~---~v~~~-~~~~~~~~i~~~ 92 (107)
T 3nfk_A 17 NLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGR---DIAEH-THDQVVLFIKAS 92 (107)
T ss_dssp CCEEEEECCCTTSCCCEEEEEEGGGTEEEEEEEECTTSHHHHSSSCCCTTCEEEEETTE---ECTTC-CHHHHHHHHHCG
T ss_pred CEEEEEEEcCCCCCCCEEEEccCCCCCCeEEEEECCCCchHHcCCccCCCCEEEEECCE---ECCCC-CHHHHHHHHHhc
Confidence 446777765 77888876543 3799999999999999995 9999999998743 22111 223456666654
Q ss_pred c----CceEEEEee
Q 023871 158 V----GPLLMKMQK 167 (276)
Q Consensus 158 ~----gpv~L~l~R 167 (276)
. ++|.|++.|
T Consensus 93 ~~~~~~~v~l~v~r 106 (107)
T 3nfk_A 93 CERHSGELMLLVRP 106 (107)
T ss_dssp GGSBTTBEEEEEEC
T ss_pred cccCCcEEEEEEEc
Confidence 3 389999887
No 252
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.91 E-value=1.4e-05 Score=75.44 Aligned_cols=53 Identities=11% Similarity=0.028 Sum_probs=25.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a 274 (276)
+..|..++..|+|++|+..|++||+++|++. .+|+|+|.||.++|++++|++.
T Consensus 61 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~ 113 (568)
T 2vsy_A 61 ARLGRVRWTQQRHAEAAVLLQQASDAAPEHP---GIALWLGHALEDAGQAEAAAAA 113 (568)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHH
Confidence 3444444455555555555555555444442 2444444444444444444443
No 253
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.91 E-value=1.3e-05 Score=75.52 Aligned_cols=78 Identities=8% Similarity=-0.072 Sum_probs=54.0
Q ss_pred CCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChh
Q 023871 191 GVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVP 269 (276)
Q Consensus 191 G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~ 269 (276)
|++++++.. |+++.++... .+.++..|..++..|+|++|+..|++||+++|++. .+|+|+|.||.++|+++
T Consensus 3 g~~~~A~~~-----~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~ 74 (568)
T 2vsy_A 3 ADGPRELLQ-----LRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP---EAVARLGRVRWTQQRHA 74 (568)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCH---HHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHH-----HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHH
Confidence 556666433 4444444443 34567999999999999999999999999999985 68999999999999999
Q ss_pred HHHhhhC
Q 023871 270 LLLALIE 276 (276)
Q Consensus 270 eAI~aLE 276 (276)
+|++.++
T Consensus 75 ~A~~~~~ 81 (568)
T 2vsy_A 75 EAAVLLQ 81 (568)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998763
No 254
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.91 E-value=3.1e-05 Score=64.59 Aligned_cols=82 Identities=17% Similarity=0.162 Sum_probs=64.0
Q ss_pred HhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh
Q 023871 186 AERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK 264 (276)
Q Consensus 186 ~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK 264 (276)
.-...|++++++..++. ..++... ..-+...|..++..|+|++|+..|++++.++|++. .+|++++.||.+
T Consensus 181 ~~~~~~~~~~A~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~l~~~~~~ 252 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRR-----AVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYV---RVMYNMAVSYSN 252 (327)
T ss_dssp HHHHTTCHHHHHHHHHH-----HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHH-----HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHH
Confidence 33466777777555544 3232222 23467889999999999999999999999999885 589999999999
Q ss_pred cCChhHHHhhh
Q 023871 265 LNQVPLLLALI 275 (276)
Q Consensus 265 Lgq~~eAI~aL 275 (276)
+|++++|+..+
T Consensus 253 ~g~~~~A~~~~ 263 (327)
T 3cv0_A 253 MSQYDLAAKQL 263 (327)
T ss_dssp TTCHHHHHHHH
T ss_pred hccHHHHHHHH
Confidence 99999999876
No 255
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.91 E-value=2.3e-05 Score=67.07 Aligned_cols=85 Identities=14% Similarity=0.065 Sum_probs=68.2
Q ss_pred HHHHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHH
Q 023871 183 IIRAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACC 261 (276)
Q Consensus 183 ~~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcC 261 (276)
..+.-...|++++++..++. ..++... ..-++..|..++..|+|++|+..|+++++++|++. .++++++.|
T Consensus 70 ~~~~~~~~g~~~~A~~~~~~-----al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~l~~~ 141 (368)
T 1fch_A 70 EGLRRLQEGDLPNAVLLFEA-----AVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ---TALMALAVS 141 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHH-----HHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH-----HHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCH---HHHHHHHHH
Confidence 34555678899998766655 3222222 34467889999999999999999999999999985 589999999
Q ss_pred HHhcCChhHHHhhh
Q 023871 262 YSKLNQVPLLLALI 275 (276)
Q Consensus 262 yaKLgq~~eAI~aL 275 (276)
|..+|++++|+..+
T Consensus 142 ~~~~g~~~~A~~~~ 155 (368)
T 1fch_A 142 FTNESLQRQACEIL 155 (368)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 99999999999876
No 256
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.91 E-value=1.2e-05 Score=70.21 Aligned_cols=81 Identities=11% Similarity=-0.052 Sum_probs=62.2
Q ss_pred CCcchhHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh---hHHHHHHHHhH
Q 023871 191 GVISNRVREIQMQNYMKKKEQKER-------REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE---ESSVASYNVAC 260 (276)
Q Consensus 191 G~i~~al~Eiq~~nYkk~Kelkkq-------ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~---e~a~A~YN~Ac 260 (276)
|++++++..+ +++.++... ..-+.+-|..+.++|+|++|+..|++||.+.|+.. ....++.|++.
T Consensus 129 g~~~~A~~~~-----~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 129 LDLSKAVHLY-----QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp TCHHHHHHHH-----HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-----HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 7777775554 444444432 33456889999999999999999999998876543 23568999999
Q ss_pred HHHhcCChhHHHhhhC
Q 023871 261 CYSKLNQVPLLLALIE 276 (276)
Q Consensus 261 CyaKLgq~~eAI~aLE 276 (276)
||..+|++++|+..++
T Consensus 204 ~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 9999999999998763
No 257
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.90 E-value=5.6e-06 Score=62.00 Aligned_cols=50 Identities=12% Similarity=0.110 Sum_probs=40.2
Q ss_pred HcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 227 RTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 227 k~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
..|+|++|+..|++||++.++++....+|+|++.||.++|++++|+..++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 51 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLA 51 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 46899999999999999976666567899999999999999999998763
No 258
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.90 E-value=2.2e-05 Score=68.45 Aligned_cols=58 Identities=16% Similarity=0.098 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
+..+..|..+...|+|++|+..|++||+++|++. .++++.|.+|..+|++++|+..|+
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~---~a~~~la~~~~~~g~~~~A~~~l~ 175 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG---EIGLLLAETLIALNRSEDAEAVLX 175 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH---HHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch---hHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4567889999999999999999999999999996 589999999999999999998774
No 259
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=97.89 E-value=3e-05 Score=58.01 Aligned_cols=76 Identities=18% Similarity=0.284 Sum_probs=53.5
Q ss_pred EEEecCc---ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEE
Q 023871 88 EVEIEQP---YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMK 164 (276)
Q Consensus 88 ~V~l~KP---LGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~ 164 (276)
.|+|.|. +|+.+.. +.+++|..|.+++.|+++| |++||+|+.+... .+-. ..+..+...|+...+.+.|.
T Consensus 6 ~v~l~~~~~g~G~~l~~--~~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~---~v~~-~~~~~~~~~l~~~~~~v~l~ 78 (91)
T 2f5y_A 6 QITIPRGKDGFGFTICC--DSPVRVQAVDSGGPAERAG-LQQLDTVLQLNER---PVEH-WKCVELAHEIRSCPSEIILL 78 (91)
T ss_dssp EEEEECBTTBTSEEEEC--SSSCEEEEECTTSHHHHHT-CCTTCEEEEETTE---ECTT-CCHHHHHHHHHTCSSEEEEE
T ss_pred EEEEEeCCCCccEEEec--CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECCC-CCHHHHHHHHHcCCCeEEEE
Confidence 4555544 6666643 4579999999999999999 9999999998753 1111 12345566677656678999
Q ss_pred EeecCC
Q 023871 165 MQKRYG 170 (276)
Q Consensus 165 l~R~~~ 170 (276)
+.|...
T Consensus 79 v~R~~~ 84 (91)
T 2f5y_A 79 VWRMVP 84 (91)
T ss_dssp EEECC-
T ss_pred EEeCCC
Confidence 998644
No 260
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.89 E-value=1.7e-05 Score=59.70 Aligned_cols=78 Identities=17% Similarity=0.221 Sum_probs=54.9
Q ss_pred eEEEEec--CcceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCce
Q 023871 86 EYEVEIE--QPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL 161 (276)
Q Consensus 86 ~y~V~l~--KPLGl~f~e~~--dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv 161 (276)
.+.|+|. .|+|+.+..+. +.+++|..|.|++.|+++| |++||+|+++... .+-.. .+-.+...++....++
T Consensus 9 ~~~v~l~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~---~v~~~-~~~~~~~~~~~~g~~v 83 (94)
T 2eeg_A 9 PHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAA-LCPGDLIQAINGE---STELM-THLEAQNRIKGCHDHL 83 (94)
T ss_dssp CEEEEECCSSCCSCCEECCTTTTSCCEECCCCSSSHHHHTT-CCTTCEEEEETTE---ETTTC-CHHHHHHHHHTCCSCE
T ss_pred eEEEEEeCCCccCEEEECccCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECCCC-CHHHHHHHHHcCCCeE
Confidence 3455554 56677776554 3589999999999999999 9999999998743 22111 2334555666545678
Q ss_pred EEEEeec
Q 023871 162 LMKMQKR 168 (276)
Q Consensus 162 ~L~l~R~ 168 (276)
.|.+.|.
T Consensus 84 ~l~v~R~ 90 (94)
T 2eeg_A 84 TLSVSSG 90 (94)
T ss_dssp EEEEECC
T ss_pred EEEEEeC
Confidence 9999884
No 261
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.89 E-value=6.4e-05 Score=57.27 Aligned_cols=79 Identities=11% Similarity=0.154 Sum_probs=56.4
Q ss_pred ccceEEEEecC---cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc--
Q 023871 83 KYEEYEVEIEQ---PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR-- 157 (276)
Q Consensus 83 ~~~~y~V~l~K---PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r-- 157 (276)
..+.+.|+|.| .+|+.+.... .+++|..|.++ |+++| |++||+|+.+... .+-. ..+..+...|+..
T Consensus 8 ~~~~~~v~l~~~~~g~G~~i~~~~-~Gv~V~~v~~~--a~~aG-L~~GD~I~~vng~---~v~~-~~~~~~~~~l~~~~~ 79 (96)
T 1ujv_A 8 QAELMTLTIVKGAQGFGFTIADSP-TGQRVKQILDI--QGCPG-LCEGDLIVEINQQ---NVQN-LSHTEVVDILKDCPI 79 (96)
T ss_dssp CCCCEEEEEECCSSSSSEEEEEET-TEEEEEEESCG--GGSTT-CCSSCEEEEETTE---ECSS-CCHHHHHHHHHHSCT
T ss_pred CceEEEEEEEeCCCceeEEEEcCC-CCEEEEEEecc--cccCC-CCCCCEEEEECCE---ECCC-CCHHHHHHHHHcCCC
Confidence 34668888876 4788886543 36999999994 77787 9999999998742 2211 1235667778863
Q ss_pred cCceEEEEeecC
Q 023871 158 VGPLLMKMQKRY 169 (276)
Q Consensus 158 ~gpv~L~l~R~~ 169 (276)
..++.|.+.|..
T Consensus 80 g~~v~l~v~R~g 91 (96)
T 1ujv_A 80 GSETSLIIHRGS 91 (96)
T ss_dssp TSEEEEEEECCS
T ss_pred CCEEEEEEEECC
Confidence 468999999853
No 262
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.89 E-value=1.7e-05 Score=70.15 Aligned_cols=89 Identities=11% Similarity=0.077 Sum_probs=62.2
Q ss_pred hhcCCCcchhHHHHHH--HHHhhHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC---hhhHHHHHHHHhH
Q 023871 187 ERNSGVISNRVREIQM--QNYMKKKE-QKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPT---PEESSVASYNVAC 260 (276)
Q Consensus 187 ~r~~G~i~~al~Eiq~--~nYkk~Ke-lkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~---~~e~a~A~YN~Ac 260 (276)
-...|++++++..++. ..+++... ......-...-|..+...|+|++|+..|++||++.|+ ......+++|++.
T Consensus 153 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 232 (383)
T 3ulq_A 153 YYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGL 232 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3356777777555544 11222111 1122334568889999999999999999999977553 3344778999999
Q ss_pred HHHhcCChhHHHhhh
Q 023871 261 CYSKLNQVPLLLALI 275 (276)
Q Consensus 261 CyaKLgq~~eAI~aL 275 (276)
||..+|++++|+..+
T Consensus 233 ~y~~~g~~~~A~~~~ 247 (383)
T 3ulq_A 233 CKNSQSQYEDAIPYF 247 (383)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHH
Confidence 999999999999875
No 263
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.89 E-value=4.2e-05 Score=63.83 Aligned_cols=56 Identities=16% Similarity=0.034 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 217 QDLREGLQLYRTG-KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 217 ~~~~eGnaLfk~g-rYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.++..|..++..| +|++|+..|++++.++|++. .+|++++.||..+|++++|+..+
T Consensus 92 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~ 148 (330)
T 3hym_B 92 SWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG---PAWIAYGHSFAVESEHDQAMAAY 148 (330)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCT---HHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccH---HHHHHHHHHHHHccCHHHHHHHH
Confidence 3567788888888 88888888888888888875 46788888888888888887664
No 264
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.89 E-value=3e-05 Score=69.98 Aligned_cols=64 Identities=13% Similarity=0.283 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 209 KEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 209 Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.+....++.++..|+.+++.|+|++|+..|+++|.++|++. .+|+|++.||.++|++++|+..+
T Consensus 19 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~ 82 (537)
T 3fp2_A 19 SQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP---VFYSNISACYISTGDLEKVIEFT 82 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCc---HHHHHHHHHHHHcCCHHHHHHHH
Confidence 33445667789999999999999999999999999999985 68999999999999999999876
No 265
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.87 E-value=3e-05 Score=62.28 Aligned_cols=54 Identities=22% Similarity=0.313 Sum_probs=28.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+..|..+++.|+|++|+..|++++...|++. .++++++.||.++|++++|+..+
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~ 216 (243)
T 2q7f_A 163 FQFGMCLANEGMLDEALSQFAAVTEQDPGHA---DAFYNAGVTYAYKENREKALEML 216 (243)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHccCHHHHHHHH
Confidence 3444444555555555555555555555442 34555555555555555555543
No 266
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.87 E-value=2.8e-05 Score=64.10 Aligned_cols=87 Identities=16% Similarity=0.024 Sum_probs=46.3
Q ss_pred cCCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh--hH-HHHHHHHhHHHHhc
Q 023871 189 NSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE--ES-SVASYNVACCYSKL 265 (276)
Q Consensus 189 ~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~--e~-a~A~YN~AcCyaKL 265 (276)
..|++++++..++..--...........-+...|..++..|+|++|+..|++|+.+.+... .. ..++++++.||..+
T Consensus 17 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 96 (338)
T 3ro2_A 17 KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL 96 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHc
Confidence 5566666644444321111111111123345666666666666666666666665544332 22 55566677777777
Q ss_pred CChhHHHhhh
Q 023871 266 NQVPLLLALI 275 (276)
Q Consensus 266 gq~~eAI~aL 275 (276)
|++++|+..+
T Consensus 97 g~~~~A~~~~ 106 (338)
T 3ro2_A 97 GNFDEAIVCC 106 (338)
T ss_dssp TCHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 7777666654
No 267
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=97.87 E-value=4.6e-05 Score=58.28 Aligned_cols=79 Identities=25% Similarity=0.404 Sum_probs=57.8
Q ss_pred EEEEecC---cceeEEeeeCC---------C-----CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchh
Q 023871 87 YEVEIEQ---PYGLKFAKGRD---------G-----GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGR 149 (276)
Q Consensus 87 y~V~l~K---PLGl~f~e~~d---------G-----gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~ 149 (276)
..|+|.| ++|+.+..+.+ | .+||..|.+++.|+++| |++||+|+.+... .+- ...+-.
T Consensus 8 r~v~l~k~~~g~G~~l~~~~~~~~~~~~~~~~~~~p~~~V~~v~~~spA~~aG-l~~GD~I~~ing~---~v~-~~~~~~ 82 (107)
T 3qe1_A 8 RVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRKGDRILEVNGV---NVE-GATHKQ 82 (107)
T ss_dssp EEEEEECBTTBTCEEEECCSSSCCCCEESSSSEESCCEEEEEECTTSHHHHHT-CCTTCEEEEETTE---ECT-TCCHHH
T ss_pred EEEEEEECCCCCCEEEEcccccCCcceeccccccCCceEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECC-CCCHHH
Confidence 5677776 48888866522 2 34799999999999999 9999999998653 111 114456
Q ss_pred HHHHhhcccCceEEEEeecCC
Q 023871 150 TMYTIRQRVGPLLMKMQKRYG 170 (276)
Q Consensus 150 ~~~air~r~gpv~L~l~R~~~ 170 (276)
+..+|+.....+.|.+.|...
T Consensus 83 ~~~~l~~~g~~v~l~v~r~~~ 103 (107)
T 3qe1_A 83 VVDLIRAGEKELILTVLSVES 103 (107)
T ss_dssp HHHHHHHCSSEEEEEEECSSC
T ss_pred HHHHHHcCCCEEEEEEEcCCC
Confidence 667777667789999998654
No 268
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=97.86 E-value=5.6e-05 Score=58.59 Aligned_cols=73 Identities=16% Similarity=0.411 Sum_probs=53.3
Q ss_pred cCcceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeecC
Q 023871 92 EQPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRY 169 (276)
Q Consensus 92 ~KPLGl~f~e~~--dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~~ 169 (276)
..++|+.+.... +.+++|..|.+++.|+++| |++||+|+.+... .+-... +-.++..++. .+++.|.+.|.-
T Consensus 26 ~~~lG~~l~~~~~~~~gv~V~~V~~~s~A~~aG-L~~GD~Il~vng~---~v~~~~-~~~~~~~~~~-~~~v~l~v~r~~ 99 (114)
T 1x5n_A 26 SRGLGCSISSGPIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGV---DFSNLD-HKEAVNVLKS-SRSLTISIVAAA 99 (114)
T ss_dssp SCCCCEEEEECCSSSCSEEEEEECTTSTTTTTT-CCTTCEEEEETTE---ETTSCC-TTHHHHHHHH-CSSEEEEECSST
T ss_pred CCceeEEEeecCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECCCCC-HHHHHHHHhc-CCeEEEEEEcCC
Confidence 456889998653 3489999999999999999 9999999998753 222221 2335556665 368999998853
Q ss_pred C
Q 023871 170 G 170 (276)
Q Consensus 170 ~ 170 (276)
|
T Consensus 100 g 100 (114)
T 1x5n_A 100 G 100 (114)
T ss_dssp T
T ss_pred C
Confidence 3
No 269
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.86 E-value=4.6e-05 Score=61.14 Aligned_cols=55 Identities=11% Similarity=0.106 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
++..|..+++.|+|++|+..|++++.+.|++. .++++++.+|.++|++++|+..+
T Consensus 128 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 128 FYMLGTVLVKLEQPKLALPYLQRAVELNENDT---EARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCccH---HHHHHHHHHHHHcCCHHHHHHHH
Confidence 34555555666666666666666666666553 35666666666666666666554
No 270
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.86 E-value=8.5e-06 Score=70.18 Aligned_cols=83 Identities=13% Similarity=0.100 Sum_probs=61.1
Q ss_pred HhhcCCCcchhHHHHHHHHHhhHHHHHHH--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh---hHHHH
Q 023871 186 AERNSGVISNRVREIQMQNYMKKKEQKER--------REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE---ESSVA 254 (276)
Q Consensus 186 ~~r~~G~i~~al~Eiq~~nYkk~Kelkkq--------ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~---e~a~A 254 (276)
.-...|++++|+..++. +.++.+. ..-.++.|..+++.|+|++|+..|++||++.++.. ....+
T Consensus 164 ~y~~~~~~~~A~~~~~k-----al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 164 IYAENGYLKKGIDLFEQ-----ILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHTTCHHHHHHHHHH-----HHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHcCCHHHHHHHHHH-----HHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 33467777777555544 3322111 13457999999999999999999999998764321 23678
Q ss_pred HHHHhHHHHhcCChhHH-Hh
Q 023871 255 SYNVACCYSKLNQVPLL-LA 273 (276)
Q Consensus 255 ~YN~AcCyaKLgq~~eA-I~ 273 (276)
++|++.||.++|++++| ..
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~ 258 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIED 258 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999999 44
No 271
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.86 E-value=3.7e-05 Score=68.00 Aligned_cols=90 Identities=12% Similarity=0.012 Sum_probs=63.4
Q ss_pred HhhcCCCcchhHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC--h-hhHHHHHHHHhH
Q 023871 186 AERNSGVISNRVREIQM--QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPT--P-EESSVASYNVAC 260 (276)
Q Consensus 186 ~~r~~G~i~~al~Eiq~--~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~--~-~e~a~A~YN~Ac 260 (276)
.-...|++++|+..++. ..+++...-........+-|..++..|+|++|+..|++||++.+. + +....+++|+|.
T Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 272 (383)
T 3ulq_A 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ 272 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 33466788888665554 112222111222235678999999999999999999999984211 1 223689999999
Q ss_pred HHHhcCChhHHHhhh
Q 023871 261 CYSKLNQVPLLLALI 275 (276)
Q Consensus 261 CyaKLgq~~eAI~aL 275 (276)
||.++|++++|+..+
T Consensus 273 ~~~~~g~~~~A~~~~ 287 (383)
T 3ulq_A 273 IHYKLGKIDKAHEYH 287 (383)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHH
Confidence 999999999999876
No 272
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=97.85 E-value=5.1e-05 Score=59.21 Aligned_cols=80 Identities=20% Similarity=0.382 Sum_probs=56.0
Q ss_pred ceEEEEecC--cceeEEeeeC---CC-CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc-
Q 023871 85 EEYEVEIEQ--PYGLKFAKGR---DG-GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR- 157 (276)
Q Consensus 85 ~~y~V~l~K--PLGl~f~e~~---dG-gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r- 157 (276)
+...|+|.| ++|+.+.-+. .+ ++||..|.++|.|+++|.|++||+|+.+-.. .+-. ..+..+...|+..
T Consensus 15 ~~~~v~l~k~~glG~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~---~~~~-~~~~~~~~~l~~~~ 90 (109)
T 1wi4_A 15 AFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKE---SMIG-VSFEEAKSIITRAK 90 (109)
T ss_dssp TEEEEEECCSSCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTS---CCTT-CCHHHHHHHHHHSC
T ss_pred cEEEEEEeCCCccCEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCE---ECCC-CCHHHHHHHHHccc
Confidence 334555555 6667776532 22 7999999999999999999999999998753 2211 1244666777643
Q ss_pred ---cCceEEEEeec
Q 023871 158 ---VGPLLMKMQKR 168 (276)
Q Consensus 158 ---~gpv~L~l~R~ 168 (276)
..++.|.+.|.
T Consensus 91 ~r~~~~~~l~v~R~ 104 (109)
T 1wi4_A 91 LRSESPWEIAFIRS 104 (109)
T ss_dssp CSSSSCEEEEEECC
T ss_pred cCCCceEEEEEEeC
Confidence 46778888884
No 273
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=97.84 E-value=1.2e-05 Score=61.55 Aligned_cols=74 Identities=22% Similarity=0.314 Sum_probs=57.6
Q ss_pred EEecCcceeEEeeeCCC--CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceeccc--chhHHHHhhcccCceEEE
Q 023871 89 VEIEQPYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIRQRVGPLLMK 164 (276)
Q Consensus 89 V~l~KPLGl~f~e~~dG--gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~--~g~~~~air~r~gpv~L~ 164 (276)
+.=..++|+.+..+.|. +++|..|.+++.|+++| |++||+|+.+... +... +..+...|+....++.|.
T Consensus 11 ~~~~~~lG~~l~~g~~~~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~------~v~~~~~~~~~~~l~~~g~~v~l~ 83 (103)
T 1v5l_A 11 LPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN-LCPGDVILAIDGF------GTESMTHADAQDRIKAASYQLCLK 83 (103)
T ss_dssp EESSSCCSBCCEEETTTTEEEECSCBCTTSTTGGGT-CCTTCBEEEETTE------ECSSCCHHHHHHHHTTCCSEEECE
T ss_pred EcCCCCcCEEEeccccCCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCE------ECCCCCHHHHHHHHHhCCCeEEEE
Confidence 33445789999877543 79999999999999999 9999999998743 2333 566777777667788999
Q ss_pred EeecC
Q 023871 165 MQKRY 169 (276)
Q Consensus 165 l~R~~ 169 (276)
+.|.-
T Consensus 84 v~R~g 88 (103)
T 1v5l_A 84 IDRAE 88 (103)
T ss_dssp ECCCT
T ss_pred EEECC
Confidence 98854
No 274
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.83 E-value=5.4e-05 Score=66.28 Aligned_cols=53 Identities=15% Similarity=0.118 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a 274 (276)
...|..+++.|+|++|+..|+++++++|++. .+|+|++.+|.++|++++|++.
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~ 293 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFP---DAYCNLANALKEKGSVAEAEDC 293 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH---HHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHH
Confidence 3445555555555555555555555555543 2344444444444444444443
No 275
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.83 E-value=1.2e-05 Score=79.38 Aligned_cols=72 Identities=17% Similarity=0.117 Sum_probs=48.5
Q ss_pred HHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhh------------------------------HH
Q 023871 204 NYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE------------------------------SS 252 (276)
Q Consensus 204 nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e------------------------------~a 252 (276)
.|.++-++... .+.++..|+.+++.|+|++|+..|++||+++|++.+ ..
T Consensus 455 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~~~~~~~al~~~P~~~ 534 (681)
T 2pzi_A 455 KLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDEHKFYQTVWSTNDGVI 534 (681)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCTTCHHHHHHHHCTTCH
T ss_pred HHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhCCchH
Confidence 34444444433 234678888888889999999999999888887631 13
Q ss_pred HHHHHHhHHHHhcCChhHHHhhh
Q 023871 253 VASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 253 ~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.+|+|+|.||.++|++++|++.+
T Consensus 535 ~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 535 SAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH
Confidence 45666666666666666666654
No 276
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.83 E-value=3.6e-05 Score=67.36 Aligned_cols=89 Identities=12% Similarity=0.016 Sum_probs=61.8
Q ss_pred hhcCCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC--hhhH-HHHHHHHhHHHH
Q 023871 187 ERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPT--PEES-SVASYNVACCYS 263 (276)
Q Consensus 187 ~r~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~--~~e~-a~A~YN~AcCya 263 (276)
-...|++++++..++..--...........-++..|..++..|+|++|+..|++||++... +... ..++++++.||.
T Consensus 58 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 137 (411)
T 4a1s_A 58 LCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLK 137 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 3478888888665554322221122222345678888888899999999999999876433 3333 677899999999
Q ss_pred hcCChhHHHhhh
Q 023871 264 KLNQVPLLLALI 275 (276)
Q Consensus 264 KLgq~~eAI~aL 275 (276)
.+|++++|+..+
T Consensus 138 ~~g~~~~A~~~~ 149 (411)
T 4a1s_A 138 VMGRFDEAAICC 149 (411)
T ss_dssp HTTCHHHHHHHH
T ss_pred HCCCHHHHHHHH
Confidence 999999998765
No 277
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=97.82 E-value=2e-05 Score=60.35 Aligned_cols=71 Identities=23% Similarity=0.293 Sum_probs=52.9
Q ss_pred EEEEecC----cceeEEeee---------CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecc--cchhHH
Q 023871 87 YEVEIEQ----PYGLKFAKG---------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA--EYGRTM 151 (276)
Q Consensus 87 y~V~l~K----PLGl~f~e~---------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~--~~g~~~ 151 (276)
.+|+|.| ++|+.+... .+.+++|..|.+++.|+++| |++||+|+.+-.. +.. .+.++.
T Consensus 17 ~~v~l~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~------~v~~~~~~~~~ 89 (104)
T 2z17_A 17 KLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANINGV------STEGFTYKQVV 89 (104)
T ss_dssp CEEEEECCTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHT-CCTTCBCCEETTE------ECTTCCHHHHH
T ss_pred eEEEEEeCCCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCE------EcCCCCHHHHH
Confidence 4555665 588988762 23599999999999999999 9999999998642 233 455677
Q ss_pred HHhhcccCceEEE
Q 023871 152 YTIRQRVGPLLMK 164 (276)
Q Consensus 152 ~air~r~gpv~L~ 164 (276)
..|+...+++.|.
T Consensus 90 ~~l~~~~~~v~l~ 102 (104)
T 2z17_A 90 DLIRSSGNLLTIE 102 (104)
T ss_dssp HHHHHTTTEEEEE
T ss_pred HHHHhCCCcEEEE
Confidence 7777666666665
No 278
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.82 E-value=5.6e-05 Score=63.01 Aligned_cols=84 Identities=12% Similarity=-0.016 Sum_probs=67.2
Q ss_pred HHHhhcCCCcchhHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHH
Q 023871 184 IRAERNSGVISNRVREIQMQNYMKKKEQKE-RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY 262 (276)
Q Consensus 184 ~~~~r~~G~i~~al~Eiq~~nYkk~Kelkk-qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCy 262 (276)
...-...|++++++..++. ..+... ....++..|..++..|+|++|+..|+++++++|++. .++++++.||
T Consensus 28 a~~~~~~~~~~~A~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~ 99 (327)
T 3cv0_A 28 GLSMLKLANLAEAALAFEA-----VCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI---AVHAALAVSH 99 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHH-----HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHH-----HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCH---HHHHHHHHHH
Confidence 4455578899998766654 222222 234466889999999999999999999999999885 5899999999
Q ss_pred HhcCChhHHHhhh
Q 023871 263 SKLNQVPLLLALI 275 (276)
Q Consensus 263 aKLgq~~eAI~aL 275 (276)
..+|++++|+..+
T Consensus 100 ~~~~~~~~A~~~~ 112 (327)
T 3cv0_A 100 TNEHNANAALASL 112 (327)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 9999999999875
No 279
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.82 E-value=6.7e-05 Score=71.74 Aligned_cols=88 Identities=8% Similarity=-0.053 Sum_probs=70.6
Q ss_pred HHHhhcCCCcchhHHHHHHHHHhhHHHHHHH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-----CCChh
Q 023871 184 IRAERNSGVISNRVREIQMQNYMKKKEQKER---------REQDLREGLQLYRTGKYEVAREKFESVLGS-----KPTPE 249 (276)
Q Consensus 184 ~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq---------ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i-----~P~~~ 249 (276)
++..++.|+++++ +..|+++.++.++ +....+-|..+..+|+|++|+..|++||++ -|+.+
T Consensus 305 ~~~~~~~g~~~eA-----~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 379 (433)
T 3qww_A 305 FRRAKHYKSPSEL-----LEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL 379 (433)
T ss_dssp HHHHTTTSCHHHH-----HHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHhhhccCHHHH-----HHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 4556678888887 4556666666543 233457788889999999999999999955 58888
Q ss_pred hHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 250 ESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 250 e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
+.+..++|+|..|..+|++++|+..++
T Consensus 380 ~~a~~l~nLa~~~~~qg~~~eA~~~~~ 406 (433)
T 3qww_A 380 NVASMWLKLGRLYMGLENKAAGEKALK 406 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 889999999999999999999998653
No 280
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.81 E-value=2.8e-05 Score=66.90 Aligned_cols=58 Identities=16% Similarity=0.039 Sum_probs=48.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHc----CCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLG----SKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~----i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
...-|+.++..|+|++|+..|++||+ ...+......+++|++.||.++|++++|+..+
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~ 219 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQV 219 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45788889999999999999999994 22344455779999999999999999999865
No 281
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.81 E-value=4.3e-05 Score=60.87 Aligned_cols=72 Identities=14% Similarity=0.054 Sum_probs=58.1
Q ss_pred HHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 203 QNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 203 ~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
..|+++.++... .+-++..|..+...|+|++|+..|+++|.++|+..+ ..+++|.+.||..+|+.++|+..+
T Consensus 95 ~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 95 KRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQD-GEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT-THHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh-HHHHHHHHHHHHHhCCCCcHHHHH
Confidence 345555555443 345678999999999999999999999999998632 258999999999999999998765
No 282
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.81 E-value=8.1e-05 Score=68.45 Aligned_cols=59 Identities=12% Similarity=0.053 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
..-+...|..+++.|+|++|+..|+++++++|++. .+|++++.||.++|++++|++.++
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~ 574 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDA---NVHTAIALVYLHKKIPGLAITHLH 574 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCH---HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34467888889999999999999999999999885 689999999999999999998763
No 283
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=4.8e-05 Score=60.54 Aligned_cols=85 Identities=18% Similarity=0.227 Sum_probs=61.5
Q ss_pred cccccceEEEEecC------cceeEEeee-CC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhH
Q 023871 80 QEEKYEEYEVEIEQ------PYGLKFAKG-RD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRT 150 (276)
Q Consensus 80 ~~~~~~~y~V~l~K------PLGl~f~e~-~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~ 150 (276)
+-.+.+.++|+|.| ++|+.+... .+ .+++|..|.+++.|+++| |++||+|+.+-.. .+-.. .+..+
T Consensus 10 e~~~~~~~~v~l~k~~~~~~~~G~~v~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~Il~Ing~---~v~~~-~~~~~ 84 (114)
T 2d8i_A 10 EICPKVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNR---AADAL-NSSML 84 (114)
T ss_dssp CSSCCEEEEEEEECSCTTTCCCCCEEEEEEETTEEEEEEEECCTTSSHHHHT-CCTTCCEEEESSC---BGGGC-CHHHH
T ss_pred EeccCceEEEEEEeCCCCccccCEEEEecCcCCcCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCE---ECCCc-CHHHH
Confidence 34455678888875 488888753 23 389999999999999999 9999999998743 33221 13345
Q ss_pred HHHhhcccCceEEEEeecCCC
Q 023871 151 MYTIRQRVGPLLMKMQKRYGK 171 (276)
Q Consensus 151 ~~air~r~gpv~L~l~R~~~~ 171 (276)
...|+. .++.|.+.|...+
T Consensus 85 ~~~l~~--~~v~l~v~R~p~~ 103 (114)
T 2d8i_A 85 KDFLSQ--PSLGLLVRTYPEL 103 (114)
T ss_dssp HHHHTS--SEEEEEEEECCCS
T ss_pred HHHHhC--CcEEEEEEECCCC
Confidence 556664 3899999997654
No 284
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.79 E-value=1.2e-05 Score=79.20 Aligned_cols=58 Identities=14% Similarity=-0.046 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
+.++..|..+++.|+|++|+..|++||+++|++. .+|+|++.||.++|++++|++.++
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~lg~~~~~~g~~~~A~~~~~ 491 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW---RLVWYRAVAELLTGDYDSATKHFT 491 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH---HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4567999999999999999999999999999995 689999999999999999998763
No 285
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=97.79 E-value=5.8e-05 Score=62.15 Aligned_cols=81 Identities=26% Similarity=0.445 Sum_probs=59.6
Q ss_pred eEEEEec---CcceeEEeeeC-------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhh
Q 023871 86 EYEVEIE---QPYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR 155 (276)
Q Consensus 86 ~y~V~l~---KPLGl~f~e~~-------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air 155 (276)
.++|++. .++|+.+.... +.++||..|.|+|.|+++|.+++||+|+.+-.. .|= -..+..+...|+
T Consensus 101 ~~~v~l~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~---~v~-~~~~~~~~~~l~ 176 (196)
T 3gsl_A 101 VMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSV---GLE-DVMHEDAVAALK 176 (196)
T ss_dssp EEEEEEEEBTTBSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTE---ECS-SCBHHHHHHHHH
T ss_pred cEEEEEecCCCCceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCC---cCC-CCCHHHHHHHHH
Confidence 3455553 46888886532 348999999999999999999999999998753 221 112556777788
Q ss_pred cccCceEEEEeecCC
Q 023871 156 QRVGPLLMKMQKRYG 170 (276)
Q Consensus 156 ~r~gpv~L~l~R~~~ 170 (276)
....++.|.+.|.-.
T Consensus 177 ~~~~~v~l~v~R~~~ 191 (196)
T 3gsl_A 177 NTYDVVYLKVAKPSN 191 (196)
T ss_dssp SCCEEEEEEEEEESC
T ss_pred cCCCeEEEEEeCCCC
Confidence 777889999998643
No 286
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.79 E-value=3.7e-05 Score=68.25 Aligned_cols=88 Identities=10% Similarity=0.032 Sum_probs=57.4
Q ss_pred hcCCCcchhHHHHHH--HHHhhHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC---ChhhHHHHHHHHhHH
Q 023871 188 RNSGVISNRVREIQM--QNYMKKKE-QKERREQDLREGLQLYRTGKYEVAREKFESVLGSKP---TPEESSVASYNVACC 261 (276)
Q Consensus 188 r~~G~i~~al~Eiq~--~nYkk~Ke-lkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P---~~~e~a~A~YN~AcC 261 (276)
...|+++.++..++. ..+++... ......-...-|..++..|+|++|+..|++||++.+ +......+++|++.|
T Consensus 152 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 231 (378)
T 3q15_A 152 YHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANS 231 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 355666666555544 22222111 112233445788888888999999999999987643 333346788888888
Q ss_pred HHhcCChhHHHhhh
Q 023871 262 YSKLNQVPLLLALI 275 (276)
Q Consensus 262 yaKLgq~~eAI~aL 275 (276)
|..+|++++|+..+
T Consensus 232 y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 232 YDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHTCHHHHHHHH
T ss_pred HHHCCCHHHHHHHH
Confidence 88888888888765
No 287
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.79 E-value=3.6e-05 Score=67.97 Aligned_cols=57 Identities=18% Similarity=-0.034 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
-+...|..+.+.|+|++|+..|++++.++|++. .+|++++.||.++|++++|+..++
T Consensus 297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~ 353 (450)
T 2y4t_A 297 SKERICHCFSKDEKPVEAIRVCSEVLQMEPDNV---NALKDRAEAYLIEEMYDEAIQDYE 353 (450)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhcCHHHHHHHHH
Confidence 456788899999999999999999999999885 689999999999999999998763
No 288
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.79 E-value=8.2e-05 Score=60.61 Aligned_cols=55 Identities=18% Similarity=0.026 Sum_probs=42.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
++..|..+++.|+|++|+..|++++.+.|++. .++++++.+|.++|++++|+..+
T Consensus 144 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~ 198 (252)
T 2ho1_A 144 FENLGLVSLQMKKPAQAKEYFEKSLRLNRNQP---SVALEMADLLYKEREYVPARQYY 198 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHcCCHHHHHHHH
Confidence 45667777788888888888888888877764 46788888888888888887765
No 289
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.78 E-value=3.9e-05 Score=72.01 Aligned_cols=81 Identities=15% Similarity=0.036 Sum_probs=64.2
Q ss_pred HhhcCCCc-chhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871 186 AERNSGVI-SNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS 263 (276)
Q Consensus 186 ~~r~~G~i-~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya 263 (276)
.-...|++ ++++. .|+++.++... .+.++..|..+++.|+|++|+..|++||+++|+. .+|+|++.||.
T Consensus 111 ~~~~~g~~~~~A~~-----~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~lg~~~~ 181 (474)
T 4abn_A 111 ALNVTPDYSPEAEV-----LLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNK----VSLQNLSMVLR 181 (474)
T ss_dssp HHTSSSSCCHHHHH-----HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCH----HHHHHHHHHHT
T ss_pred HHHhccccHHHHHH-----HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCH----HHHHHHHHHHH
Confidence 33467777 77744 44455555444 4557789999999999999999999999999993 68999999999
Q ss_pred hc---------CChhHHHhhh
Q 023871 264 KL---------NQVPLLLALI 275 (276)
Q Consensus 264 KL---------gq~~eAI~aL 275 (276)
.+ |++++|+..+
T Consensus 182 ~~~~~~~~~~~g~~~~A~~~~ 202 (474)
T 4abn_A 182 QLQTDSGDEHSRHVMDSVRQA 202 (474)
T ss_dssp TCCCSCHHHHHHHHHHHHHHH
T ss_pred HhccCChhhhhhhHHHHHHHH
Confidence 99 9999998875
No 290
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.78 E-value=3.5e-05 Score=60.55 Aligned_cols=90 Identities=11% Similarity=-0.011 Sum_probs=63.7
Q ss_pred HhhcCCCcchhHHHHHH--HHHhhHH-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC---ChhhHHHHHHHHh
Q 023871 186 AERNSGVISNRVREIQM--QNYMKKK-EQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKP---TPEESSVASYNVA 259 (276)
Q Consensus 186 ~~r~~G~i~~al~Eiq~--~nYkk~K-elkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P---~~~e~a~A~YN~A 259 (276)
.-...|++++++..+++ ..+++.. .......-....|..++..|+|++|+..|++++.+.+ +......+++|++
T Consensus 75 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 154 (203)
T 3gw4_A 75 VERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLG 154 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 34467888888666555 1122111 0112233456889999999999999999999996643 2233367789999
Q ss_pred HHHHhcCChhHHHhhh
Q 023871 260 CCYSKLNQVPLLLALI 275 (276)
Q Consensus 260 cCyaKLgq~~eAI~aL 275 (276)
.||..+|++++|+..+
T Consensus 155 ~~~~~~g~~~~A~~~~ 170 (203)
T 3gw4_A 155 DLAQQEKNLLEAQQHW 170 (203)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHH
Confidence 9999999999999876
No 291
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.78 E-value=2.4e-05 Score=73.45 Aligned_cols=71 Identities=7% Similarity=-0.168 Sum_probs=46.9
Q ss_pred HhhHHHHHHH-HHHHHHHHHHHHHc--------CCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 205 YMKKKEQKER-REQDLREGLQLYRT--------GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 205 Ykk~Kelkkq-ae~~~~eGnaLfk~--------grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
|+++.++... ...|+..|..++.. |+|++|+..|++||.++|.......+|+|+|.||.++|++++|++.+
T Consensus 202 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 281 (474)
T 4abn_A 202 AKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGF 281 (474)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4444444333 23456777777777 77888888888888887721122357888888888888888887765
No 292
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=97.78 E-value=8.5e-05 Score=58.59 Aligned_cols=81 Identities=16% Similarity=0.204 Sum_probs=55.9
Q ss_pred EEEEecCcceeEEeeeC---CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc----cC
Q 023871 87 YEVEIEQPYGLKFAKGR---DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR----VG 159 (276)
Q Consensus 87 y~V~l~KPLGl~f~e~~---dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r----~g 159 (276)
+.+.-...+|+.+.-+. .|.++|..|.++|.|+++|.|++||+|+++... .+-. ..+.++...|+.. ..
T Consensus 22 ~~~~~~~glG~~i~gg~~~~~~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~---~v~~-~~~~~~~~~l~~~~~~~g~ 97 (118)
T 1v6b_A 22 LRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGK---IVTD-YTLAEAEAALQKAWNQGGD 97 (118)
T ss_dssp EEEESCSCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSC---BCTT-CBHHHHHHHHHHHHHHTCS
T ss_pred EEECCCCccCEEEEcccCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECCC-CCHHHHHHHHHHhhhcCCC
Confidence 44444557888887553 357999999999999999559999999998753 2211 1233444555532 56
Q ss_pred ceEEEEeecCCC
Q 023871 160 PLLMKMQKRYGK 171 (276)
Q Consensus 160 pv~L~l~R~~~~ 171 (276)
++.|++.|....
T Consensus 98 ~v~l~v~r~~~~ 109 (118)
T 1v6b_A 98 WIDLVVAVCPPK 109 (118)
T ss_dssp EEEEEEECCCSC
T ss_pred eEEEEEEeCCcc
Confidence 899999996543
No 293
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=97.77 E-value=5.6e-05 Score=58.48 Aligned_cols=57 Identities=19% Similarity=0.353 Sum_probs=45.6
Q ss_pred CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeec
Q 023871 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR 168 (276)
Q Consensus 104 dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~ 168 (276)
.+|++|..|.+++.|+++| |++||+|+.+... +..++......++. ..++.|.+.|.
T Consensus 34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~------~v~~~~~~~~~l~~-~~~v~l~v~R~ 90 (113)
T 2pzd_A 34 QHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQ------MVQNAEDVYEAVRT-QSQLAVQIRRG 90 (113)
T ss_dssp SSCEEEEEEBTTSHHHHHT-CCTTCEEEEETTE------ECCSHHHHHHHHHH-CSSEEEEEEET
T ss_pred CCCeEEEEeCCCChHHHcC-CCCCCEEEEECCE------ECCCHHHHHHHHhC-CCeEEEEEEEC
Confidence 4699999999999999999 9999999998642 33445556666665 57899999884
No 294
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=97.73 E-value=7.8e-05 Score=58.26 Aligned_cols=79 Identities=22% Similarity=0.342 Sum_probs=53.7
Q ss_pred cccceEEEEecCc------ceeEEeee-CCC--CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHH
Q 023871 82 EKYEEYEVEIEQP------YGLKFAKG-RDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMY 152 (276)
Q Consensus 82 ~~~~~y~V~l~KP------LGl~f~e~-~dG--gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~ 152 (276)
|.++.-.|.|.|+ +|+.+... .+| +++|.+|.|++.|+++| +++||+|+.+... .+ ..-.+..+..
T Consensus 3 ~~~~~~~v~i~k~~~~~~~~Gf~v~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~Il~vng~---~v-~~~~~~~l~~ 77 (94)
T 3kzd_A 3 MGKVTHSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNR---AA-DALNSSMLKD 77 (94)
T ss_dssp -CCEEEEEEEEC------CCSEEEEEECSSSSCEEEEEEECTTSHHHHTT-CCTTCEEEEETTE---EG-GGCCHHHHHH
T ss_pred cccceeEEEEEeCCCCcCCcCEEEEecCCCCcCCeEEEEECCCCHHHHcC-CCCCCEEEEECCE---EC-CCCCHHHHHH
Confidence 4555666666665 78888774 344 89999999999999999 9999999998753 11 1112345556
Q ss_pred HhhcccCceEEEEee
Q 023871 153 TIRQRVGPLLMKMQK 167 (276)
Q Consensus 153 air~r~gpv~L~l~R 167 (276)
++++ .++.|.+..
T Consensus 78 ~l~~--~~l~ltV~~ 90 (94)
T 3kzd_A 78 FLSQ--PSLGLLVRT 90 (94)
T ss_dssp HHHS--SEEEEEEEE
T ss_pred HHhC--CeEEEEEEe
Confidence 6664 446666544
No 295
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.73 E-value=6.1e-05 Score=66.79 Aligned_cols=82 Identities=12% Similarity=0.061 Sum_probs=62.7
Q ss_pred HhhcCCCcchhHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-----CCCChhhHHH
Q 023871 186 AERNSGVISNRVREIQMQNYMKKKEQKE-------RREQDLREGLQLYRTGKYEVAREKFESVLG-----SKPTPEESSV 253 (276)
Q Consensus 186 ~~r~~G~i~~al~Eiq~~nYkk~Kelkk-------qae~~~~eGnaLfk~grYeEAI~~Ye~AL~-----i~P~~~e~a~ 253 (276)
.-...|++++|+..++. +.++.+ ......+-|..++..|+|++|+..|++||+ .+|.. ..
T Consensus 191 ~y~~~~~~~~A~~~~~~-----al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~---~~ 262 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEA-----ALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL---PK 262 (378)
T ss_dssp HHHHTTCHHHHHHHHHH-----HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH---HH
T ss_pred HHHHhCCHHHHHHHHHH-----HHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH---HH
Confidence 34467777777655544 333322 233456889999999999999999999998 45544 57
Q ss_pred HHHHHhHHHHhcCChhHHHhhh
Q 023871 254 ASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 254 A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+++|+|.||.++|++++|+..+
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~ 284 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFI 284 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999999999875
No 296
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.73 E-value=0.00014 Score=63.97 Aligned_cols=52 Identities=13% Similarity=0.131 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHH
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLL 272 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI 272 (276)
+...|..+.+.|+|++|+..|++||+++|++. .+++|++.|+..+|++++++
T Consensus 203 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~---~~l~~l~~~~~~~g~~~eaa 254 (291)
T 3mkr_A 203 LNGQAACHMAQGRWEAAEGVLQEALDKDSGHP---ETLINLVVLSQHLGKPPEVT 254 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCCHHHH
Confidence 34677777888888888888888888888886 47888888888888887654
No 297
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=97.73 E-value=6.1e-05 Score=73.73 Aligned_cols=75 Identities=21% Similarity=0.365 Sum_probs=57.4
Q ss_pred EEEec--CcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc--ccCceEE
Q 023871 88 EVEIE--QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ--RVGPLLM 163 (276)
Q Consensus 88 ~V~l~--KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~--r~gpv~L 163 (276)
.|.+. ++|||.+.-++++|+||..|.+||.|+++| |++||+|+.|... .|- .....+++..|+. -.++|.|
T Consensus 4 ~V~l~k~~~lG~~i~gg~~~Gi~V~~V~~gspA~~aG-L~~GD~Il~VNG~---~v~-~~t~~e~~~~L~~~~~g~~v~L 78 (468)
T 3shw_A 4 LVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNV---DFT-NIIREEAVLFLLDLPKGEEVTI 78 (468)
T ss_dssp EEEEECCSSCCEEEEEETTTEEEEEEECSSSHHHHTT-CCTTEEEEEETTE---ECT-TCCHHHHHHHHHHSCTTSEEEE
T ss_pred EEEEecCCccceEEEccCcCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECC-CCCHHHHHHHHHhcCCCCEEEE
Confidence 35555 489999988888999999999999999999 9999999998753 221 1124456677775 3567888
Q ss_pred EEee
Q 023871 164 KMQK 167 (276)
Q Consensus 164 ~l~R 167 (276)
++.|
T Consensus 79 ~V~r 82 (468)
T 3shw_A 79 LAQK 82 (468)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8888
No 298
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=97.72 E-value=6.7e-05 Score=68.28 Aligned_cols=85 Identities=18% Similarity=0.274 Sum_probs=64.5
Q ss_pred cccceEEEEecC----cceeEEeeeCC--CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhh
Q 023871 82 EKYEEYEVEIEQ----PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR 155 (276)
Q Consensus 82 ~~~~~y~V~l~K----PLGl~f~e~~d--Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air 155 (276)
...+...|+|.| ++|+.+..+.+ .++||..|.+||-|++++.|++||+|+.|-.. .|-. ...-++...|+
T Consensus 74 ~~~~~r~V~L~k~~~~glGf~I~gg~d~~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~---~v~~-~t~~e~v~~l~ 149 (263)
T 1z87_A 74 LLLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGE---DLSS-ATHDEAVQALK 149 (263)
T ss_dssp TSCSSEEECCCTTTTCCCCCEEEEETTTTEEEEEEECCTTSHHHHCTTCCSSCEEEEESSC---BCTT-SCHHHHHHHHH
T ss_pred CCCccEEEEEEeCCCCCEeEEEeeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCE---ECCC-cCHHHHHHHHh
Confidence 344678899987 58899987754 48999999999999995449999999998753 2222 12446777788
Q ss_pred cccCceEEEEeecCC
Q 023871 156 QRVGPLLMKMQKRYG 170 (276)
Q Consensus 156 ~r~gpv~L~l~R~~~ 170 (276)
.-.+.|.|++.|...
T Consensus 150 ~~g~~V~L~V~R~~~ 164 (263)
T 1z87_A 150 KTGKEVVLEVKYMKE 164 (263)
T ss_dssp HCCSCCCEEEECCSS
T ss_pred cCCCeEEEEEEeCcc
Confidence 767789999999644
No 299
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.72 E-value=5.7e-05 Score=64.97 Aligned_cols=89 Identities=16% Similarity=0.014 Sum_probs=61.4
Q ss_pred hhcCCCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh--hhH-HHHHHHHhHHHH
Q 023871 187 ERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTP--EES-SVASYNVACCYS 263 (276)
Q Consensus 187 ~r~~G~i~~al~Eiq~~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~--~e~-a~A~YN~AcCya 263 (276)
-...|++++++..++..--...........-+...|..++..|+|++|+..|++|+.+.+.. ... ..++++++.||.
T Consensus 19 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 98 (406)
T 3sf4_A 19 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK 98 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 34788888886665553222211122223456788888888899999999999988765443 333 667888999999
Q ss_pred hcCChhHHHhhh
Q 023871 264 KLNQVPLLLALI 275 (276)
Q Consensus 264 KLgq~~eAI~aL 275 (276)
.+|++++|+..+
T Consensus 99 ~~g~~~~A~~~~ 110 (406)
T 3sf4_A 99 VLGNFDEAIVCC 110 (406)
T ss_dssp HTTCHHHHHHHH
T ss_pred HcCCHHHHHHHH
Confidence 999999888765
No 300
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=97.71 E-value=0.0001 Score=62.06 Aligned_cols=81 Identities=17% Similarity=0.357 Sum_probs=58.9
Q ss_pred ceEEEEecC----cceeEEeeeC------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHh
Q 023871 85 EEYEVEIEQ----PYGLKFAKGR------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI 154 (276)
Q Consensus 85 ~~y~V~l~K----PLGl~f~e~~------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~ai 154 (276)
+.++|+|.| .+|+.+..+. +.+++|..|.|++-|+++|.|++||+|+++... .+-. ..+..+...|
T Consensus 6 ~~~~v~l~~~~~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~---~v~~-~~~~~~~~~l 81 (196)
T 1p1d_A 6 ETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGI---PTED-STFEEANQLL 81 (196)
T ss_dssp EEEEEEEECBTTTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTB---CSTT-SCHHHHHHHH
T ss_pred EEEEEEEEeCCCCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE---ECCC-CCHHHHHHHH
Confidence 567788866 4889998863 348999999999999999999999999998643 2211 1234455666
Q ss_pred hcc--cCceEEEEeecC
Q 023871 155 RQR--VGPLLMKMQKRY 169 (276)
Q Consensus 155 r~r--~gpv~L~l~R~~ 169 (276)
+.. ..++.|++.|..
T Consensus 82 ~~~~~g~~v~l~v~R~~ 98 (196)
T 1p1d_A 82 RDSSITSKVTLEIEFDV 98 (196)
T ss_dssp HTCCSSSEEEEEEEECS
T ss_pred HhCCCCCeEEEEEEecC
Confidence 644 346788887754
No 301
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=97.70 E-value=0.00011 Score=58.18 Aligned_cols=76 Identities=14% Similarity=0.179 Sum_probs=52.6
Q ss_pred EEEecC---cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccC-ceEE
Q 023871 88 EVEIEQ---PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG-PLLM 163 (276)
Q Consensus 88 ~V~l~K---PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~g-pv~L 163 (276)
.|+|.| ++|+.+ ..+.+++|..|.|++.|+++| |++||+|+.+-.. .+- ......+...|+...+ ++.|
T Consensus 26 ~v~l~k~~~~~G~~l--~~~~~v~V~~V~~gspA~~AG-L~~GD~Il~VnG~---~v~-~~~~~dv~~~i~~~~~~~v~l 98 (109)
T 2vsv_A 26 SIRFTAEEGDLGFTL--RGNAPVQVHFLDPYCSASVAG-AREGDYIVSIQLV---DCK-WLTLSEVMKLLKSFGEDEIEM 98 (109)
T ss_dssp EEEECCGGGCCCEEE--ESSSSCEEEEECTTSHHHHTT-CCTTCEEEEETTE---ECT-TCCHHHHHHHHHTTTTSCEEE
T ss_pred EEEEEeCCCceeEEE--eCCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECC-CCCHHHHHHHHHhCCCCeEEE
Confidence 455554 456555 334579999999999999999 9999999998743 111 0133456667775555 4999
Q ss_pred EEeecCC
Q 023871 164 KMQKRYG 170 (276)
Q Consensus 164 ~l~R~~~ 170 (276)
++.|+..
T Consensus 99 ~V~~~~~ 105 (109)
T 2vsv_A 99 KVVSLLD 105 (109)
T ss_dssp EEESCC-
T ss_pred EEEECCC
Confidence 9988764
No 302
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.69 E-value=6.4e-05 Score=61.91 Aligned_cols=87 Identities=14% Similarity=0.103 Sum_probs=54.9
Q ss_pred cCCCcchhHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh---hhHHHHHHHHhHHHH
Q 023871 189 NSGVISNRVREIQM--QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTP---EESSVASYNVACCYS 263 (276)
Q Consensus 189 ~~G~i~~al~Eiq~--~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~---~e~a~A~YN~AcCya 263 (276)
..|++++++..++. ..+.+..........+...|..++..|+|++|+..|++++.+.|+. .....+++++|.||.
T Consensus 195 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 274 (338)
T 3ro2_A 195 LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 274 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 45666666555544 1111111111122245677888888888888888888888665443 233667888888888
Q ss_pred hcCChhHHHhhh
Q 023871 264 KLNQVPLLLALI 275 (276)
Q Consensus 264 KLgq~~eAI~aL 275 (276)
.+|++++|+..+
T Consensus 275 ~~g~~~~A~~~~ 286 (338)
T 3ro2_A 275 LLQDYEKAIDYH 286 (338)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhcCHHHHHHHH
Confidence 888888887755
No 303
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.68 E-value=7e-05 Score=65.53 Aligned_cols=82 Identities=16% Similarity=0.191 Sum_probs=57.6
Q ss_pred cCCCcchhHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh---hhHHHHHHHH
Q 023871 189 NSGVISNRVREIQMQNYMKKKEQKER-------REQDLREGLQLYRTGKYEVAREKFESVLGSKPTP---EESSVASYNV 258 (276)
Q Consensus 189 ~~G~i~~al~Eiq~~nYkk~Kelkkq-------ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~---~e~a~A~YN~ 258 (276)
..|++++++..+++ +.++... ...+...|..++..|+|++|+..|++|+.+.|+. .....+++++
T Consensus 235 ~~g~~~~A~~~~~~-----al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 309 (411)
T 4a1s_A 235 LLGDFQAAIEHHQE-----RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSL 309 (411)
T ss_dssp HTTCHHHHHHHHHH-----HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHH-----HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56677776555544 3332222 2245678888888999999999999999776643 2236778888
Q ss_pred hHHHHhcCChhHHHhhh
Q 023871 259 ACCYSKLNQVPLLLALI 275 (276)
Q Consensus 259 AcCyaKLgq~~eAI~aL 275 (276)
|.||..+|++++|+..+
T Consensus 310 a~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 310 GNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 88888888888888765
No 304
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.67 E-value=7.7e-05 Score=57.75 Aligned_cols=80 Identities=19% Similarity=0.259 Sum_probs=57.6
Q ss_pred eEEEEecC---cceeEEeeeCCC---CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc---
Q 023871 86 EYEVEIEQ---PYGLKFAKGRDG---GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ--- 156 (276)
Q Consensus 86 ~y~V~l~K---PLGl~f~e~~dG---gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~--- 156 (276)
+..|+|.| ++|+.+.-+.+. .+||..|.+++.|+++|.|++||+|+.+-.. .+ ....+.++...|+.
T Consensus 7 ~~~v~l~k~~~glG~~i~gg~~~~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~---~v-~~~~~~~~~~~l~~~~~ 82 (103)
T 1ufx_A 7 GTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGL---TL-RGKEHREAARIIAEAFK 82 (103)
T ss_dssp SEEEEEECCSSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTE---EC-TTCBHHHHHHHHHHHHH
T ss_pred eEEEEEEcCCCcCCeEEECCCCCCCCcEEEEEeCCCChHHHCCCCCCCCEEEEECCE---EC-CCCCHHHHHHHHHHhcc
Confidence 35677776 788999776553 4699999999999999999999999998642 22 01124455666664
Q ss_pred --ccCceEEEEeecC
Q 023871 157 --RVGPLLMKMQKRY 169 (276)
Q Consensus 157 --r~gpv~L~l~R~~ 169 (276)
...++.|.+.|..
T Consensus 83 ~~~~~~i~l~v~r~~ 97 (103)
T 1ufx_A 83 TKDRDYIDFLVTEFN 97 (103)
T ss_dssp CSSCSEEEEEECCCC
T ss_pred cCCCCeEEEEEEEcc
Confidence 3567888888743
No 305
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.67 E-value=0.00015 Score=57.86 Aligned_cols=70 Identities=11% Similarity=0.194 Sum_probs=51.7
Q ss_pred cceeEEeeeC-----CCCeEEEEeCC--CCCcccccCcccCCEEEEeecccCCcceecccc--hhHHHHhhcccCceEEE
Q 023871 94 PYGLKFAKGR-----DGGTYIDAIAP--GGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY--GRTMYTIRQRVGPLLMK 164 (276)
Q Consensus 94 PLGl~f~e~~-----dGgv~V~~v~~--ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~--g~~~~air~r~gpv~L~ 164 (276)
++|+.|.-.. ..+++|..|.+ ++.|+++| |++||+|+.+... +...+ ..+..+|+....++.|.
T Consensus 28 ~~G~~v~l~~~~~~~~~gv~V~~V~~~~~spA~~aG-L~~GD~Il~Vng~------~v~~~~~~dl~~~l~~~g~~v~l~ 100 (118)
T 2yub_A 28 RRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNA-IHPGDRILEINGT------PVRTLRVEEVEDAIKQTSQTLQLL 100 (118)
T ss_dssp SCSSEEEEECTTSSSCCEEEEEECCTTTSCTTHHHH-CCTTCCEEEESSS------BTTTSCHHHHHHHHHCCSSCEEEE
T ss_pred CceEEEEeccccccCCCcEEEEEecCCCCChHHHcC-CCCCCEEEEECCE------ECCCcCHHHHHHHHHhCCCEEEEE
Confidence 4677766432 35899999999 99999999 9999999998742 23333 55666677555578999
Q ss_pred EeecCC
Q 023871 165 MQKRYG 170 (276)
Q Consensus 165 l~R~~~ 170 (276)
+.|...
T Consensus 101 v~R~g~ 106 (118)
T 2yub_A 101 IEHDPV 106 (118)
T ss_dssp EEECSS
T ss_pred EEECCE
Confidence 988543
No 306
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=97.66 E-value=0.00014 Score=60.57 Aligned_cols=71 Identities=20% Similarity=0.398 Sum_probs=53.0
Q ss_pred CcceeEEeeeC----------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceE
Q 023871 93 QPYGLKFAKGR----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL 162 (276)
Q Consensus 93 KPLGl~f~e~~----------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~ 162 (276)
+.||+.+.-+. +.+++|..|.|++.|++ | |++||+|+.+... .+-.. ..-.++.+++...+.+.
T Consensus 2 ~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~-g-l~~GD~I~~vng~---~v~~~-~~~~~~~~~~~~~~~v~ 75 (195)
T 2qbw_A 2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGY---SFINI-EHGQAVSLLKTFQNTVE 75 (195)
T ss_dssp CCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT-T-CCTTCEEEEETTE---ECTTC-CHHHHHHHHHHCCSEEE
T ss_pred CcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh-C-CCCCCEEEEECCE---ECCCC-CHHHHHHHHHcCCCeEE
Confidence 45788887653 34999999999999999 7 9999999998642 22222 23456667776667899
Q ss_pred EEEeecC
Q 023871 163 MKMQKRY 169 (276)
Q Consensus 163 L~l~R~~ 169 (276)
|.+.|..
T Consensus 76 l~v~r~~ 82 (195)
T 2qbw_A 76 LIIVREV 82 (195)
T ss_dssp EEEEEEC
T ss_pred EEEEEcC
Confidence 9999964
No 307
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=97.65 E-value=0.00016 Score=60.86 Aligned_cols=78 Identities=19% Similarity=0.378 Sum_probs=57.1
Q ss_pred ceEEEEecC----cceeEEeeeC--CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccc--hhHHHHhhc
Q 023871 85 EEYEVEIEQ----PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY--GRTMYTIRQ 156 (276)
Q Consensus 85 ~~y~V~l~K----PLGl~f~e~~--dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~--g~~~~air~ 156 (276)
..+.|+|.| +||+.+..+. +++++|..|.+++.|+++|.|++||+|+++... +..++ -.++..++.
T Consensus 7 ~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~------~v~~~~~~~~~~~~~~ 80 (200)
T 2qt5_A 7 GSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGI------NLAKFRHDEIISLLKN 80 (200)
T ss_dssp EEEEEEEECCTTCCCCEEEECCTTSSSCSEEEEECTTSHHHHTTSCCTTCEEEEETTE------ECTTSCHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCCCEEEecccCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCE------ECCCCCHHHHHHHHHh
Confidence 456777754 7999998763 458999999999999999449999999998753 22233 345555655
Q ss_pred ccCceEEEEeec
Q 023871 157 RVGPLLMKMQKR 168 (276)
Q Consensus 157 r~gpv~L~l~R~ 168 (276)
-..++.|.+.|.
T Consensus 81 ~g~~v~l~v~R~ 92 (200)
T 2qt5_A 81 VGERVVLEVEYE 92 (200)
T ss_dssp CCSEEEEEEEEE
T ss_pred CCCeEEEEEecc
Confidence 455788888875
No 308
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.64 E-value=0.0002 Score=62.38 Aligned_cols=83 Identities=11% Similarity=0.045 Sum_probs=54.8
Q ss_pred cCCCcchhHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh------------------
Q 023871 189 NSGVISNRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE------------------ 249 (276)
Q Consensus 189 ~~G~i~~al~Eiq~~nYkk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~------------------ 249 (276)
..|++++++.. |+++.++...- +.++..|..+...|++++|+..|++++..+|+..
T Consensus 129 ~~g~~~~A~~~-----~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~ 203 (287)
T 3qou_A 129 QESNYTDALPL-----LXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTP 203 (287)
T ss_dssp HTTCHHHHHHH-----HHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCH
T ss_pred hCCCHHHHHHH-----HHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCc
Confidence 56777777444 44444444432 3345667777777777777766666665555421
Q ss_pred -------------hHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 250 -------------ESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 250 -------------e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
+...+++|.|.+|..+|++++|++.|+
T Consensus 204 a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~ 243 (287)
T 3qou_A 204 EIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLF 243 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 013689999999999999999998763
No 309
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=97.64 E-value=0.00011 Score=69.72 Aligned_cols=73 Identities=22% Similarity=0.384 Sum_probs=56.0
Q ss_pred ecCcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-ccC-ceEEEEeec
Q 023871 91 IEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-RVG-PLLMKMQKR 168 (276)
Q Consensus 91 l~KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-r~g-pv~L~l~R~ 168 (276)
-..+||+.+..++++|++|..|.+||.|+++| +++||+|+.+... .+- ......+...|+. ..| ++.|++.|.
T Consensus 17 k~~~lG~~i~gg~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~---~v~-~~~~~e~~~~l~~~~~g~~v~l~v~r~ 91 (391)
T 3tsz_A 17 KGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNV---DFT-NIIREEAVLFLLDLPKGEEVTILAQKK 91 (391)
T ss_dssp CCSSCCEEEEEETTTEEEEEEECTTCHHHHTT-CCTTEEEEEETTE---ECT-TCCHHHHHHHHHHSCTTSEEEEEEEEC
T ss_pred cCCceeEEEEecCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECC-CCCHHHHHHHHHhhcCCCeEEEEEeeC
Confidence 33489999988888999999999999999999 9999999998753 221 1135566677774 344 688888774
No 310
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=97.64 E-value=0.00014 Score=61.09 Aligned_cols=78 Identities=21% Similarity=0.401 Sum_probs=60.2
Q ss_pred ceEEEEecC---cceeEEeeeC------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecc--cchhHHHH
Q 023871 85 EEYEVEIEQ---PYGLKFAKGR------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA--EYGRTMYT 153 (276)
Q Consensus 85 ~~y~V~l~K---PLGl~f~e~~------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~--~~g~~~~a 153 (276)
..+.|++.| ++|+.+..+. ..+++|..|.+++.|+++|.|++||+|+.+... +.. .+..+..+
T Consensus 106 ~~~~v~l~~~~~~lG~~l~~g~~~~~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~------~v~~~~~~~~~~~ 179 (200)
T 2qt5_A 106 RTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGI------RLLGTTHAEAMSI 179 (200)
T ss_dssp EEEEEEEECBTTBCSEEEEEECCSSTTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEETTE------ECTTCCHHHHHHH
T ss_pred eEEEEEEecCCCCeEEEEECCCCCCccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCE------ECCCCCHHHHHHH
Confidence 446666644 5899887653 348999999999999999999999999998642 334 55667777
Q ss_pred hhcccCceEEEEeec
Q 023871 154 IRQRVGPLLMKMQKR 168 (276)
Q Consensus 154 ir~r~gpv~L~l~R~ 168 (276)
|+....++.|.+.|.
T Consensus 180 l~~~~~~v~l~v~R~ 194 (200)
T 2qt5_A 180 LKQCGQEATLLIEYD 194 (200)
T ss_dssp HHTTCSEEEEEEEEE
T ss_pred HHcCCCeEEEEEEEC
Confidence 777567889999985
No 311
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.63 E-value=7.1e-06 Score=77.85 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+.++..|+.+++.|+|++|+..|++||+++|++. .+|+|+|.||.++|++++|++.+
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~ 63 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNA---IYYGNRSLAYLRTECYGYALGDA 63 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH---HHHHHHHHHHHHhcCHHHHHHHH
Confidence 3456778888999999999999999999999985 68999999999999999999875
No 312
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.62 E-value=0.0002 Score=69.47 Aligned_cols=87 Identities=13% Similarity=0.060 Sum_probs=70.2
Q ss_pred HHHhhcCCCcchhHHHHHHHHHhhHHHHHHH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-----CCChh
Q 023871 184 IRAERNSGVISNRVREIQMQNYMKKKEQKER---------REQDLREGLQLYRTGKYEVAREKFESVLGS-----KPTPE 249 (276)
Q Consensus 184 ~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq---------ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i-----~P~~~ 249 (276)
+..-+..|+++++ +..|+++.++.++ +....+-|..+..+|+|++|+..|++||++ -|+.+
T Consensus 316 a~~~~~qg~~~eA-----~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 390 (490)
T 3n71_A 316 IDKARSEGLYHEV-----VKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHHHTTTCHHHH-----HHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHhCCCHHHH-----HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 4445688999888 4556666665543 333457788888999999999999999965 58888
Q ss_pred hHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 250 ESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 250 e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+.+..++|+|..|..+|++++|+..+
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~ 416 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMI 416 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88999999999999999999999865
No 313
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=97.62 E-value=0.00019 Score=56.55 Aligned_cols=75 Identities=17% Similarity=0.403 Sum_probs=55.7
Q ss_pred EEEEec---CcceeEEeeeC-CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceeccc--chhHHHHhhcccCc
Q 023871 87 YEVEIE---QPYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIRQRVGP 160 (276)
Q Consensus 87 y~V~l~---KPLGl~f~e~~-dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~--~g~~~~air~r~gp 160 (276)
..|+|. ..+|+.+.... .++++|..|.+++.|+++| |++||+|+.+... +..+ +..+..+|+...+.
T Consensus 11 r~v~l~~~~~g~G~~l~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~------~v~~~~~~~~~~~l~~~~~~ 83 (128)
T 2kjd_A 11 RLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGV------CMEGKQHGDVVSAIRAGGDE 83 (128)
T ss_dssp EEEEEECCSSSCCEEEEECSSSCSEEEEEECTTSHHHHHT-CCTTCEEEEETTE------ECTTCCHHHHHHHHHTTCSE
T ss_pred EEEEEecCCCcccEEEEecCCCCCEEEEEeCCCChHHHcC-CCCCCEEEEECCE------ECCCCCHHHHHHHHHhCCCC
Confidence 445555 45888887764 3599999999999999999 9999999998753 3333 55677777765554
Q ss_pred -eEEEEeec
Q 023871 161 -LLMKMQKR 168 (276)
Q Consensus 161 -v~L~l~R~ 168 (276)
+.|.+.|.
T Consensus 84 ~~~l~v~R~ 92 (128)
T 2kjd_A 84 TKLLVVDRE 92 (128)
T ss_dssp EEEEEECHH
T ss_pred EEEEEEEeC
Confidence 56888874
No 314
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.61 E-value=0.00023 Score=61.11 Aligned_cols=83 Identities=11% Similarity=0.019 Sum_probs=59.2
Q ss_pred hcCCCcchhHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC---hhhHHHHHHH
Q 023871 188 RNSGVISNRVREIQMQNYMKKKEQKER-------REQDLREGLQLYRTGKYEVAREKFESVLGSKPT---PEESSVASYN 257 (276)
Q Consensus 188 r~~G~i~~al~Eiq~~nYkk~Kelkkq-------ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~---~~e~a~A~YN 257 (276)
...|++++++..++. +.++..+ ..-+...|..+...|+|++|+..|++|+++.++ ......++++
T Consensus 238 ~~~g~~~~A~~~~~~-----al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 312 (406)
T 3sf4_A 238 IFLGEFETASEYYKK-----TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWS 312 (406)
T ss_dssp HHTTCHHHHHHHHHH-----HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHH-----HHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 356666666554444 3333222 334567888888999999999999999977543 3334678999
Q ss_pred HhHHHHhcCChhHHHhhh
Q 023871 258 VACCYSKLNQVPLLLALI 275 (276)
Q Consensus 258 ~AcCyaKLgq~~eAI~aL 275 (276)
+|.||.++|++++|+..+
T Consensus 313 la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 313 LGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 999999999999998765
No 315
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.57 E-value=0.00011 Score=64.45 Aligned_cols=47 Identities=11% Similarity=0.035 Sum_probs=42.3
Q ss_pred HcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 227 RTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 227 k~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
..|+|++|+..|+++++.+|++. .+|+|+|.||.++|++++|+..|+
T Consensus 178 ~~~~~~eA~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~eA~~~l~ 224 (291)
T 3mkr_A 178 GGEKLQDAYYIFQEMADKCSPTL---LLLNGQAACHMAQGRWEAAEGVLQ 224 (291)
T ss_dssp CTTHHHHHHHHHHHHHHHSCCCH---HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35899999999999999999885 689999999999999999998763
No 316
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=97.57 E-value=8.4e-05 Score=56.07 Aligned_cols=71 Identities=13% Similarity=0.189 Sum_probs=50.8
Q ss_pred CcceeEEeeeC----CC-----CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEE
Q 023871 93 QPYGLKFAKGR----DG-----GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLM 163 (276)
Q Consensus 93 KPLGl~f~e~~----dG-----gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L 163 (276)
.++|+.+.... ++ +++|..|.+++.|+++| |++||+|+++... . ........+...|+....++.|
T Consensus 13 ~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~---~-v~~~~~~~~~~~l~~~g~~v~l 87 (99)
T 3khf_A 13 KKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHINGE---S-VLGLVHMDVVELLLKSGNKISL 87 (99)
T ss_dssp CCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHT-CCTTCEEEEETTE---E-CTTCCHHHHHHHHHHSCSEEEE
T ss_pred CCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcC-CCCCCEEEEECCE---E-CCCCCHHHHHHHHhcCCCEEEE
Confidence 45777776542 11 56899999999999999 9999999998642 1 1111444566677755677899
Q ss_pred EEeec
Q 023871 164 KMQKR 168 (276)
Q Consensus 164 ~l~R~ 168 (276)
.+.|.
T Consensus 88 ~v~r~ 92 (99)
T 3khf_A 88 RTTAL 92 (99)
T ss_dssp EEECS
T ss_pred EEEEC
Confidence 98873
No 317
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.56 E-value=9.1e-05 Score=56.19 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=56.0
Q ss_pred ceEEEEecCc-----ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccC
Q 023871 85 EEYEVEIEQP-----YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG 159 (276)
Q Consensus 85 ~~y~V~l~KP-----LGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~g 159 (276)
..++|+|.|. +|+.+.. +.+++|..|.+++.|+ +| |++||+|+.+... .+=. ..+-+++..++....
T Consensus 8 ~~~~v~l~~~~~~~~~G~~l~~--~~~~~V~~V~~~spA~-ag-L~~GD~Il~ing~---~v~~-~~~~~~~~~~~~~g~ 79 (96)
T 2edv_A 8 VRHTVKIDKDTLLQDYGFHISE--SLPLTVVAVTAGGSAH-GK-LFPGDQILQMNNE---PAED-LSWERAVDILREAED 79 (96)
T ss_dssp EEEEEEECCCSSSCSCSBCCCS--SSSCBCCCBCSSSSST-TT-SCTTCBEEEESSC---BSTT-CCHHHHHHHHHHCSS
T ss_pred ccEEEEEEECCCCCcccEEEec--CCCeEEEEECCCCchh-hC-CCCCCEEEEECCE---ECCC-CCHHHHHHHHHcCCC
Confidence 4577888764 5555543 5699999999999995 66 9999999998743 2211 134456667776567
Q ss_pred ceEEEEeecC
Q 023871 160 PLLMKMQKRY 169 (276)
Q Consensus 160 pv~L~l~R~~ 169 (276)
++.|.+.|..
T Consensus 80 ~v~l~v~R~~ 89 (96)
T 2edv_A 80 SLSITVVRCT 89 (96)
T ss_dssp CEEEEEEECC
T ss_pred eEEEEEEECC
Confidence 8999999976
No 318
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=97.53 E-value=0.00022 Score=59.99 Aligned_cols=77 Identities=21% Similarity=0.379 Sum_probs=59.6
Q ss_pred eEEEEecC----cceeEEeeeC----CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceeccc--chhHHHHhh
Q 023871 86 EYEVEIEQ----PYGLKFAKGR----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIR 155 (276)
Q Consensus 86 ~y~V~l~K----PLGl~f~e~~----dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~--~g~~~~air 155 (276)
.+.|++++ .+|+.+.... ..+++|..|.+++.|+++|.+++||+|+.+... +..+ +......|+
T Consensus 108 ~~~v~l~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~------~v~~~~~~~~~~~l~ 181 (196)
T 1p1d_A 108 TFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNI------RLDSCSMEDAVQILQ 181 (196)
T ss_dssp CEEEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTE------EGGGCCHHHHHHHHH
T ss_pred cEEEEecCCCCCCcCEEEECCCCCCCCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCE------ECCCCCHHHHHHHHH
Confidence 46777763 5799887642 358999999999999999989999999998642 2333 556666777
Q ss_pred cccCceEEEEeec
Q 023871 156 QRVGPLLMKMQKR 168 (276)
Q Consensus 156 ~r~gpv~L~l~R~ 168 (276)
....++.|.+.|.
T Consensus 182 ~~~~~v~l~v~R~ 194 (196)
T 1p1d_A 182 QCEDLVKLKIRKD 194 (196)
T ss_dssp HCTTCEEEEEECC
T ss_pred hCCCEEEEEEEeC
Confidence 6678899999884
No 319
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=97.51 E-value=0.00023 Score=72.07 Aligned_cols=83 Identities=23% Similarity=0.412 Sum_probs=63.1
Q ss_pred ceEEEEecC---cceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCc
Q 023871 85 EEYEVEIEQ---PYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP 160 (276)
Q Consensus 85 ~~y~V~l~K---PLGl~f~e~~d-Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gp 160 (276)
+...|+|.| +||+.+..+.+ .+++|..|.+||.|+++|.|++||+|+.|... .|-. ..+.++...|+...++
T Consensus 307 ~~~~v~l~~~~~~lG~~i~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~---~v~~-~~~~e~~~~l~~~~~~ 382 (721)
T 2xkx_A 307 EPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGV---DLRN-ASHEQAAIALKNAGQT 382 (721)
T ss_pred ceEEEEEEECCCCccEEEeccCCCCCeEEEEeCCCChHHhcCCCccCCEEEEECCE---ECCC-CCHHHHHHHHHhcCCe
Confidence 456677765 48888876544 59999999999999999999999999998753 2211 1245677778877788
Q ss_pred eEEEEeecCCC
Q 023871 161 LLMKMQKRYGK 171 (276)
Q Consensus 161 v~L~l~R~~~~ 171 (276)
+.|.+.|....
T Consensus 383 v~L~v~r~~~~ 393 (721)
T 2xkx_A 383 VTIIAQYKPEE 393 (721)
T ss_pred EEEEEEeCchh
Confidence 99999887543
No 320
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=97.50 E-value=0.00011 Score=59.76 Aligned_cols=83 Identities=13% Similarity=0.209 Sum_probs=58.8
Q ss_pred ceEEEEecC---cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-c-cC
Q 023871 85 EEYEVEIEQ---PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VG 159 (276)
Q Consensus 85 ~~y~V~l~K---PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-r-~g 159 (276)
..++++|.| -+|+.+.. .+++++|..|.++|.|+++|.|++||+|+++-.. .|- -..+..+...|+. . ..
T Consensus 27 ~~~~~~l~k~~~glG~~i~~-~~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~---~v~-~~s~~d~~~~l~~~~~G~ 101 (126)
T 1wif_A 27 KVIQTKLTVGNLGLGLVVIQ-NGPYLQISHLINKGAAASDGILQPGDVLISVGHA---NVL-GYTLREFLKLLQNITIGT 101 (126)
T ss_dssp CEEEEEEECCTTCCCCCEEE-ETTEEEECCCCTTSSGGGCSSSCTTCBEEEESSS---CCT-TCCHHHHHHHHTSCCSSC
T ss_pred ceEEEEEecCCceEeEEEEc-CCCcEEEEEECCCCHHHHcCCCCCCCEEEEECCE---EcC-CCCHHHHHHHHhcCCCCC
Confidence 446666654 34555554 3568999999999999999999999999998642 221 1234566777775 3 35
Q ss_pred ceEEEEeecCCCc
Q 023871 160 PLLMKMQKRYGKM 172 (276)
Q Consensus 160 pv~L~l~R~~~~~ 172 (276)
+|.|.+.|.|-.+
T Consensus 102 ~v~l~V~R~~~~i 114 (126)
T 1wif_A 102 VLQIKAYRGFLEI 114 (126)
T ss_dssp EEEEEEESSSSCC
T ss_pred EEEEEEEECCCcc
Confidence 7899999985443
No 321
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=97.49 E-value=0.00025 Score=58.36 Aligned_cols=72 Identities=22% Similarity=0.430 Sum_probs=52.5
Q ss_pred EEEEecC----cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchh--HHHHhhcccC-
Q 023871 87 YEVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGR--TMYTIRQRVG- 159 (276)
Q Consensus 87 y~V~l~K----PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~--~~~air~r~g- 159 (276)
.+|+|.| .||+.+... +++++|..|.|++.|+++| |++||+|+++... +..++.. ....++...+
T Consensus 6 r~v~l~k~~~~~lG~~~~~~-~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~------~v~~~~~~~~~~~~~~~~~~ 77 (166)
T 1w9e_A 6 REVILCKDQDGKIGLRLKSI-DNGIFVQLVQANSPASLVG-LRFGDQVLQINGE------NCAGWSSDKAHKVLKQAFGE 77 (166)
T ss_dssp EEEEEECCTTSCCSEEEEEE-TTEEEEEEECTTSHHHHTT-CCTTCEEEEETTE------ECTTCCHHHHHHHHHHCCSS
T ss_pred EEEEEEeCCCCcEeEEEEeC-CCCEEEEEECCCChHHHcC-CCCCCEEEEECCE------ECCCCCHHHHHHHHhcCCCC
Confidence 5677776 689999874 5789999999999999999 9999999998743 2223332 3334444444
Q ss_pred ceEEEEe
Q 023871 160 PLLMKMQ 166 (276)
Q Consensus 160 pv~L~l~ 166 (276)
++.|++.
T Consensus 78 ~v~l~vr 84 (166)
T 1w9e_A 78 KITMTIR 84 (166)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 7788883
No 322
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.46 E-value=0.0001 Score=65.94 Aligned_cols=56 Identities=16% Similarity=0.023 Sum_probs=47.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCC------hhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 220 REGLQLYRTGKYEVAREKFESVLGSKPT------PEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~------~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.-|...+..|+|++||..|++||++.+. +.....+|+|+|.||..+|++++|+..+
T Consensus 56 ~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~ 117 (472)
T 4g1t_A 56 LLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYV 117 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 4688889999999999999999987432 2233678999999999999999998765
No 323
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.43 E-value=0.0002 Score=64.03 Aligned_cols=79 Identities=23% Similarity=0.195 Sum_probs=51.5
Q ss_pred cCCCcchhHHHHHHHHHhhHHHHHHH---------HHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCChhhHHHHHHH
Q 023871 189 NSGVISNRVREIQMQNYMKKKEQKER---------REQDLREGLQLYR--TGKYEVAREKFESVLGSKPTPEESSVASYN 257 (276)
Q Consensus 189 ~~G~i~~al~Eiq~~nYkk~Kelkkq---------ae~~~~eGnaLfk--~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN 257 (276)
..|+++++ ...|.++.++.++ .+-..+.|..+.+ .++|++|+..|++||+++|++.+ ++++
T Consensus 106 ~~g~~~~A-----~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~---~~~~ 177 (472)
T 4g1t_A 106 HMGRLSDV-----QIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE---FTSG 177 (472)
T ss_dssp HTTCHHHH-----HHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHH---HHHH
T ss_pred HcCChHHH-----HHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHH---HHHH
Confidence 45555555 2446666666553 2334567877754 46799999999999999999874 5555
Q ss_pred HhHHHH---hcCChhHHHhhh
Q 023871 258 VACCYS---KLNQVPLLLALI 275 (276)
Q Consensus 258 ~AcCya---KLgq~~eAI~aL 275 (276)
.+.++. ..++.++|++.+
T Consensus 178 ~~~~~~~l~~~~~~~~al~~~ 198 (472)
T 4g1t_A 178 LAIASYRLDNWPPSQNAIDPL 198 (472)
T ss_dssp HHHHHHHHHHSCCCCCTHHHH
T ss_pred HHHHHHHhcCchHHHHHHHHH
Confidence 555544 445556666543
No 324
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.43 E-value=0.00027 Score=64.94 Aligned_cols=53 Identities=8% Similarity=-0.039 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHh
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLA 273 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~ 273 (276)
|...|..+.+.|+|++|+..|++++++.|++. .+|++++.+|.++|++++|++
T Consensus 410 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~ 462 (597)
T 2xpi_A 410 WIGFAHSFAIEGEHDQAISAYTTAARLFQGTH---LPYLFLGMQHMQLGNILLANE 462 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCS---HHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccch---HHHHHHHHHHHHcCCHHHHHH
Confidence 34455555555555555555555555555442 344444444444444444443
No 325
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.37 E-value=0.00023 Score=50.69 Aligned_cols=60 Identities=15% Similarity=0.237 Sum_probs=44.7
Q ss_pred HhhcCCCcchhHHHHHHHHHhhHHHHHHH-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhh
Q 023871 186 AERNSGVISNRVREIQMQNYMKKKEQKER-RE-QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE 250 (276)
Q Consensus 186 ~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae-~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e 250 (276)
.-...|++++++..++. ..++... .. -++..|..++..|+|++|+..|++||.++|++.+
T Consensus 9 ~~~~~~~~~~A~~~~~~-----al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 70 (99)
T 2kc7_A 9 ELINQGDIENALQALEE-----FLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA 70 (99)
T ss_dssp HHHHHTCHHHHHHHHHH-----HHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred HHHHcCCHHHHHHHHHH-----HHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 33456777777655544 3333322 23 5678999999999999999999999999999864
No 326
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=97.37 E-value=0.00016 Score=57.71 Aligned_cols=70 Identities=17% Similarity=0.349 Sum_probs=49.8
Q ss_pred cCcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhh---cccCceEEEEee
Q 023871 92 EQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR---QRVGPLLMKMQK 167 (276)
Q Consensus 92 ~KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air---~r~gpv~L~l~R 167 (276)
....|+.+.. .++++.|.+|.+|+.|+++| +++||+|+++-.. .+ ....+.++...|+ ...+++.|.+.-
T Consensus 27 ~~g~G~~l~~-~~~~~~I~~V~~gSpA~~AG-L~~GD~I~~Ing~---~v-~~~s~~dv~~~i~~~~~~g~~v~LLV~~ 99 (101)
T 3qik_A 27 EEDYGFDIEE-KNKAVVVKSVQRGSLAEVAG-LQVGRKIYSINED---LV-FLRPFSEVESILNQSFCSRRPLRLLVAT 99 (101)
T ss_dssp SSSSSEEEEE-ETTEEEEEEECTTSHHHHHT-CCTTCBEEEETTE---ES-TTSCHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCcccEEEEc-cCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCE---Ec-CcCCHHHHHHHHHHhhccCCeEEEEEec
Confidence 4456777776 46689999999999999999 9999999998642 22 1223444444444 357888887653
No 327
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=97.34 E-value=0.0005 Score=52.19 Aligned_cols=73 Identities=11% Similarity=0.200 Sum_probs=53.6
Q ss_pred eEEEEecC----cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCce
Q 023871 86 EYEVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL 161 (276)
Q Consensus 86 ~y~V~l~K----PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv 161 (276)
...|+|.| ++|+.+. +| +|..|.+|+.|+++| +++||+|+.|-.. .+ .-....++...||...+.|
T Consensus 5 ~r~v~l~k~~~g~~Gf~i~---~g--~I~~v~~gspA~~aG-l~~GD~Il~VNG~---~v-~~~~~~evv~llr~~g~~V 74 (82)
T 1r6j_A 5 PRTITMHKDSTGHVGFIFK---NG--KITSIVKDSSAARNG-LLTEHNICEINGQ---NV-IGLKDSQIADILSTSGTVV 74 (82)
T ss_dssp CEEEEEECCTTSCCCEEEE---TT--EEEEECTTSHHHHHT-CCSSEEEEEETTE---EC-TTCCHHHHHHHHHHSCSEE
T ss_pred eEEEEEEECCCCCeEEEEE---CC--EEEEecCCCHHHHcC-CCCCCEEEEECCE---Ec-CCCCHHHHHHHHhcCCCEE
Confidence 36788877 5777764 23 489999999999999 8999999998764 22 1223457788889656678
Q ss_pred EEEEeec
Q 023871 162 LMKMQKR 168 (276)
Q Consensus 162 ~L~l~R~ 168 (276)
+|++...
T Consensus 75 ~L~v~p~ 81 (82)
T 1r6j_A 75 TITIMPA 81 (82)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 8887654
No 328
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.30 E-value=0.0003 Score=53.30 Aligned_cols=64 Identities=22% Similarity=0.437 Sum_probs=46.1
Q ss_pred cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEee
Q 023871 94 PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQK 167 (276)
Q Consensus 94 PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R 167 (276)
++|+.+. .| +|..|.++|.|+++| |++||+|+.+... .+- ...+.++...|+....++.|++.+
T Consensus 25 ~lG~~~~---~G--~V~~V~~~spA~~aG-L~~GD~Il~Ing~---~v~-~~~~~~~~~~l~~~g~~v~l~v~p 88 (90)
T 1y7n_A 25 QLGFSVQ---NG--IICSLMRGGIAERGG-VRVGHRIIEINGQ---SVV-ATPHEKIVHILSNAVGEIHMKTMP 88 (90)
T ss_dssp CCCEEEE---TT--EEEEECTTSHHHHHT-CCSSCEEEEETTE---ECT-TSCHHHHHHHHHHCCEEEEEEEEC
T ss_pred ccCeEec---CC--EEEEECCCCHHHHcC-CCCCCEEEEECCE---ECC-CCCHHHHHHHHHcCCCeEEEEEEE
Confidence 4676663 23 999999999999999 9999999998743 331 123456667777556677777764
No 329
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.28 E-value=7e-05 Score=59.50 Aligned_cols=61 Identities=15% Similarity=0.353 Sum_probs=47.0
Q ss_pred CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeecCC
Q 023871 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYG 170 (276)
Q Consensus 105 Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~~~ 170 (276)
.+++|..|.+++.|+++| |++||+|+.+-.. .+- -..+..+...|+....++.|.+.|.-.
T Consensus 61 ~gv~V~~V~~~spA~~aG-L~~GD~I~~ing~---~v~-~~~~~~~~~~l~~~g~~v~l~v~r~~~ 121 (126)
T 2yuy_A 61 DTIFVKQVKEGGPAFEAG-LCTGDRIIKVNGE---SVI-GKTYSQVIALIQNSDTTLELSVMPKDS 121 (126)
T ss_dssp CCCCBCCCCSSSHHHHHT-CCSSCCCCEETTE---ECS-SCCHHHHHHHHHTCTTEEEEECCCCCC
T ss_pred CCEEEEEECCCChHHHcC-CCCCCEEEEECCE---ECC-CCCHHHHHHHHHcCCCEEEEEEEECCC
Confidence 469999999999999999 9999999998742 221 114556777787667788999988543
No 330
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=97.27 E-value=0.00052 Score=59.52 Aligned_cols=71 Identities=7% Similarity=-0.041 Sum_probs=54.0
Q ss_pred HHHhhHHH-HHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 203 QNYMKKKE-QKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 203 ~nYkk~Ke-lkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
..|.++-+ +... ..-|+.-|..+.+.|++++|+..|++||+++|++.+ .+|.|.+.++.++|++++|+..+
T Consensus 85 ~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~~~~~~~~~~A~~~~ 157 (308)
T 2ond_A 85 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--LVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH--HHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc--HHHHHHHHHHHHhcCHHHHHHHH
Confidence 55666666 4443 345778888888889999999999999998888753 27888888888888888887654
No 331
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=96.36 E-value=4.1e-05 Score=60.39 Aligned_cols=75 Identities=24% Similarity=0.436 Sum_probs=49.9
Q ss_pred eEEEEecC----cceeEEeeeCC--CCeEEEEeCCCCCccc-ccCcccCCEEEEeecccCCcceecccchhHHHHhhccc
Q 023871 86 EYEVEIEQ----PYGLKFAKGRD--GGTYIDAIAPGGSADK-TGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV 158 (276)
Q Consensus 86 ~y~V~l~K----PLGl~f~e~~d--Ggv~V~~v~~ggnA~k-~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~ 158 (276)
..+|+|.| ++|+.+..+.+ .+++|..|.++|.|++ +| |++||+|+++... .+= ...+..+...|+...
T Consensus 28 ~~~v~l~k~~~~glG~~l~~g~~~~~gv~V~~V~~~spA~~~aG-L~~GD~Il~ING~---~v~-~~~~~~~~~~l~~~~ 102 (112)
T 2lob_A 28 IRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGG-LHVGDAILAVNGV---NLR-DTKHKEAVTILSQQR 102 (112)
Confidence 34566554 57787776532 3899999999999999 66 9999999998743 231 113344555666544
Q ss_pred CceEEEE
Q 023871 159 GPLLMKM 165 (276)
Q Consensus 159 gpv~L~l 165 (276)
+.+.|++
T Consensus 103 ~~v~l~V 109 (112)
T 2lob_A 103 GEIEFEV 109 (112)
Confidence 5566554
No 332
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=97.26 E-value=0.00054 Score=69.34 Aligned_cols=82 Identities=23% Similarity=0.435 Sum_probs=56.7
Q ss_pred ccceEEEEecC---cceeEEeeeC-------CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHH
Q 023871 83 KYEEYEVEIEQ---PYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMY 152 (276)
Q Consensus 83 ~~~~y~V~l~K---PLGl~f~e~~-------dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~ 152 (276)
.++.++|+|.| +||+.+.-+. +.++||..|.|||-|+++|.|++||+|+.|... .+-.. ....++.
T Consensus 57 ~~~~~~v~l~k~~~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~---~v~~~-~~~~~~~ 132 (721)
T 2xkx_A 57 EMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEV---DVREV-THSAAVE 132 (721)
T ss_pred CceEEEEEEEeCCCCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCE---ECCCC-CHHHHHH
Confidence 34567888875 7888887653 458999999999999999999999999998753 22111 1123445
Q ss_pred HhhcccCceEEEEeec
Q 023871 153 TIRQRVGPLLMKMQKR 168 (276)
Q Consensus 153 air~r~gpv~L~l~R~ 168 (276)
.|+.-...|.|.+.|.
T Consensus 133 ~l~~~g~~v~l~v~R~ 148 (721)
T 2xkx_A 133 ALKEAGSIVRLYVMRR 148 (721)
T ss_pred HhhccccccceEEEec
Confidence 5554344556666554
No 333
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=97.23 E-value=0.00026 Score=55.72 Aligned_cols=72 Identities=17% Similarity=0.201 Sum_probs=51.4
Q ss_pred CcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccC-ceEEEEeecCCC
Q 023871 93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG-PLLMKMQKRYGK 171 (276)
Q Consensus 93 KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~g-pv~L~l~R~~~~ 171 (276)
.++|+.+. .+.+++|..|.+++.|+++| |++||+|+.+-.. .+- ...+.++...|+...+ ++.|++.|+...
T Consensus 26 ~~~G~~l~--~~~~v~V~~V~~~spA~~aG-L~~GD~Il~InG~---~v~-~~~~~d~~~~i~~~~~~~v~l~V~~~~~~ 98 (111)
T 1vae_A 26 GDLGFTLR--GNTPVQVHFLDPHCSASLAG-AKEGDYIVSIQGV---DCK-WLTVSEVMKLLKSFGGEEVEMKVVSLLDS 98 (111)
T ss_dssp SCCSCCEE--SSSSCEECCCCTTSSHHHHH-CCTTCEEEEETTE---ECS-SCCHHHHHHHHHHTTTSEECEEEECEECC
T ss_pred CcccEEEe--CCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCE---ECC-CCCHHHHHHHHHhCCCceEEEEEEecCCC
Confidence 45676663 34579999999999999999 9999999998743 221 1144556667775444 589999887654
No 334
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=97.18 E-value=0.00021 Score=67.46 Aligned_cols=79 Identities=16% Similarity=0.303 Sum_probs=56.3
Q ss_pred eEEEEecC----cceeEEeeeCCC----CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcc--eecccchhHHHHhh
Q 023871 86 EYEVEIEQ----PYGLKFAKGRDG----GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEI--WPAAEYGRTMYTIR 155 (276)
Q Consensus 86 ~y~V~l~K----PLGl~f~e~~dG----gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdev--w~a~~~g~~~~air 155 (276)
.-+|+|.| +||+.+....+| +++|..|.|||-|+++|.|++||+|+.+... .+ |+.. .+...|+
T Consensus 205 ~~~V~i~k~~ge~lG~~i~~~~~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~---~v~~~~~~---~~~~~l~ 278 (388)
T 3suz_A 205 CKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGT---SLVGLPLA---TCQGIIK 278 (388)
T ss_dssp CEEEEECCCSSCCCCCCCBCC---CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTE---ECSSCCST---THHHHTT
T ss_pred ceEEEEECCCCCceeEEEEecCCCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCE---EccCCCHH---HHHHHHH
Confidence 34666665 699998876655 7999999999999999999999999998753 33 3333 3445555
Q ss_pred cc--cCceEEEEeecCC
Q 023871 156 QR--VGPLLMKMQKRYG 170 (276)
Q Consensus 156 ~r--~gpv~L~l~R~~~ 170 (276)
.. ..++.|.+.|...
T Consensus 279 ~~~~~~~v~l~v~r~~~ 295 (388)
T 3suz_A 279 GLKNQTQVKLNIVSCPP 295 (388)
T ss_dssp TCTTCSCEEEEEEECCS
T ss_pred hccCCCccccccccccc
Confidence 42 3458999988543
No 335
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=97.14 E-value=0.0013 Score=56.50 Aligned_cols=80 Identities=10% Similarity=0.068 Sum_probs=55.6
Q ss_pred cceeEEeee-----CCCCeEEEEeCCCCCcccccCccc-CCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEee
Q 023871 94 PYGLKFAKG-----RDGGTYIDAIAPGGSADKTGMFQV-GDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQK 167 (276)
Q Consensus 94 PLGl~f~e~-----~dGgv~V~~v~~ggnA~k~G~i~v-GD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R 167 (276)
.||+.+..- ...|++|.+|.+++.|+++| +++ ||+|+.+. ..+-..+++-..+... ...++.|.+.|
T Consensus 96 ~lGi~~~~~~~~~~~~~Gv~V~~V~~~spA~~aG-l~~~GD~I~~in----g~v~~~~~l~~~l~~~--~g~~v~l~v~r 168 (209)
T 3rle_A 96 LLGVSIRFCSFDGANENVWHVLEVESNSPAALAG-LRPHSDYIIGAD----TVMNESEDLFSLIETH--EAKPLKLYVYN 168 (209)
T ss_dssp SSCEEEEEEECTTGGGSCEEEEEECTTSHHHHHT-CCTTTEEEEEES----SCCCSSSCHHHHHHHT--TTSCEEEEEEE
T ss_pred ccceEEeecChhHccccceEEEEeCCCChHHHCC-CCCCCCEEEECC----CEeCCHHHHHHHHHhC--CCCeEEEEEEE
Confidence 478888642 23689999999999999999 999 99999985 2354455554444332 35579999999
Q ss_pred cCCCcccccccch
Q 023871 168 RYGKMEQTGELSE 180 (276)
Q Consensus 168 ~~~~~~~~~~~~e 180 (276)
.-++....-.++.
T Consensus 169 ~~~~~~~~v~l~p 181 (209)
T 3rle_A 169 TDTDNCREVIITP 181 (209)
T ss_dssp TTTTEEEEEEECC
T ss_pred CCceEEEEEEEEe
Confidence 7665433333443
No 336
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=97.12 E-value=0.0012 Score=53.14 Aligned_cols=57 Identities=7% Similarity=0.071 Sum_probs=42.9
Q ss_pred CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc--cCceEEEEeec
Q 023871 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VGPLLMKMQKR 168 (276)
Q Consensus 104 dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r--~gpv~L~l~R~ 168 (276)
..+++|..|.+++.|+ +| |++||+|+++... +..++.....+|... ..++.|++.|.
T Consensus 56 ~~g~~V~~V~~~spA~-aG-L~~GD~I~~inG~------~v~~~~~l~~~l~~~~~g~~v~l~v~R~ 114 (134)
T 2l97_A 56 TSGVIVRSVQSNMPAN-GH-LEKYDVITKVDDK------EIASSTDLQSALYNHSIGDTIKITYYRN 114 (134)
T ss_dssp CSCEEEEECSTTSGGG-TT-SCSSCEEEEETTE------ECCCHHHHHHHHHHSSTTCEEEEEEEET
T ss_pred CCCEEEEEECCCCchH-HC-CCCCCEEEEECCE------EcCCHHHHHHHHHhCCCCCEEEEEEEEC
Confidence 4689999999999999 88 9999999998743 233444555555543 34789999884
No 337
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.11 E-value=0.0011 Score=55.43 Aligned_cols=54 Identities=9% Similarity=0.025 Sum_probs=34.8
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh----cCChhHHHhhh
Q 023871 217 QDLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVPLLLALI 275 (276)
Q Consensus 217 ~~~~eGnaLfk----~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK----Lgq~~eAI~aL 275 (276)
.++.-|..++. .++|++|+..|++|++.+ + ..+++|++.+|.. .+++++|+..+
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~---~~a~~~lg~~~~~~~~~~~~~~~A~~~~ 137 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--Y---AEGCASLGGIYHDGKVVTRDFKKAVEYF 137 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---HHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--C---ccHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence 34566666666 677777777777776653 2 2467777777777 77777776654
No 338
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.08 E-value=0.001 Score=55.54 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=21.7
Q ss_pred cCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh----cCChhHHHhhh
Q 023871 228 TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVPLLLALI 275 (276)
Q Consensus 228 ~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK----Lgq~~eAI~aL 275 (276)
.++|++|+..|++|++..+ ..+++|++.||.. .+++++|+..+
T Consensus 163 ~~~~~~A~~~~~~a~~~~~-----~~a~~~lg~~~~~g~~~~~~~~~A~~~~ 209 (273)
T 1ouv_A 163 PKDLKKALASYDKACDLKD-----SPGCFNAGNMYHHGEGATKNFKEALARY 209 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHTCSSCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 4455555555555544321 1345555555555 55555555543
No 339
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=97.07 E-value=0.0014 Score=50.63 Aligned_cols=58 Identities=19% Similarity=0.433 Sum_probs=44.5
Q ss_pred CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeecC
Q 023871 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRY 169 (276)
Q Consensus 104 dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~~ 169 (276)
..|++|..|.+++.|+++| |++||+|+++... . ..++.....+++. ..++.|.+.|.-
T Consensus 34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~---~---v~~~~~~~~~l~~-g~~v~l~v~R~g 91 (112)
T 2p3w_A 34 SSGIYVQEVAPNSPSQRGG-IQDGDIIVKVNGR---P---LVDSSELQEAVLT-ESPLLLEVRRGN 91 (112)
T ss_dssp CSSEEEEEECTTSHHHHHT-CCTTCEEEEETTE---E---CCSHHHHHHHHHH-CSSEEEEEEETT
T ss_pred CCCeEEEEECCCChHHHCC-CCCCCEEEEECCE---E---CCCHHHHHHHHhC-CCeEEEEEEECC
Confidence 4689999999999999999 9999999998742 3 3344555555643 567899998853
No 340
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.06 E-value=0.0011 Score=50.26 Aligned_cols=46 Identities=7% Similarity=-0.045 Sum_probs=25.7
Q ss_pred HHHhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh
Q 023871 203 QNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTP 248 (276)
Q Consensus 203 ~nYkk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~ 248 (276)
..++++.++...- +..+-.|+.+|+.|+|++||..|+++|+.+|++
T Consensus 30 ~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 30 LLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred HHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3444555555442 334555666666666666666666666666553
No 341
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=97.05 E-value=0.0004 Score=61.13 Aligned_cols=76 Identities=17% Similarity=0.412 Sum_probs=53.8
Q ss_pred EEEEecC---cceeEEeeeCC-CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCce-
Q 023871 87 YEVEIEQ---PYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL- 161 (276)
Q Consensus 87 y~V~l~K---PLGl~f~e~~d-Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv- 161 (276)
..|+|.| .+|+.+..+.+ ++++|..|.+|+.|+++| |++||+|+.|-.. .|- ...+..+...|+.....+
T Consensus 11 r~v~l~k~~~glG~~l~~~~~~~gv~V~~V~~gSpA~~aG-L~~GD~Il~VNG~---~V~-~~s~~dl~~~l~~~g~~v~ 85 (216)
T 2krg_A 11 RLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGV---CME-GKQHGDVVSAIRAGGDETK 85 (216)
T ss_dssp EEEEEECCSSSSCEEECCCSSSCSCBEEEECTTSHHHHHT-CCTTCBCCEETTE---ECT-TCCTHHHHHHHHHHCSEEE
T ss_pred EEEEEEeCCCCceEEEEecCCCCCeEEEEeCCCChHHHcC-CCCCCEEEEECCE---ECC-CCCHHHHHHHHHhcCCeEE
Confidence 4455554 47788866543 399999999999999999 9999999998642 221 114556666676555567
Q ss_pred EEEEee
Q 023871 162 LMKMQK 167 (276)
Q Consensus 162 ~L~l~R 167 (276)
.|++.|
T Consensus 86 ~l~V~R 91 (216)
T 2krg_A 86 LLVVDR 91 (216)
T ss_dssp EEECCH
T ss_pred EEEEEE
Confidence 777766
No 342
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.05 E-value=0.00085 Score=58.49 Aligned_cols=84 Identities=11% Similarity=-0.024 Sum_probs=59.6
Q ss_pred hhcCCCcchhHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC-----hhhHHHH
Q 023871 187 ERNSGVISNRVREIQMQNYMKKKEQKER-------REQDLREGLQLYRTGKYEVAREKFESVLGSKPT-----PEESSVA 254 (276)
Q Consensus 187 ~r~~G~i~~al~Eiq~~nYkk~Kelkkq-------ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~-----~~e~a~A 254 (276)
....|+++.+...+++ +.++..+ ..-....|..++..|+|++|+..|+++|++.+. .+....+
T Consensus 63 ~~~~g~~~~A~~~~~~-----al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 137 (373)
T 1hz4_A 63 LHCKGELTRSLALMQQ-----TEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFL 137 (373)
T ss_dssp HHHHTCHHHHHHHHHH-----HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHH
T ss_pred HHhcCcHHHHHHHHHH-----HHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHH
Confidence 3456777777554443 3333322 222357788889999999999999999976532 1334678
Q ss_pred HHHHhHHHHhcCChhHHHhhh
Q 023871 255 SYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 255 ~YN~AcCyaKLgq~~eAI~aL 275 (276)
++|++.+|..+|++++|+..+
T Consensus 138 ~~~la~~~~~~g~~~~A~~~~ 158 (373)
T 1hz4_A 138 VRIRAQLLWAWARLDEAEASA 158 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHH
Confidence 899999999999999998765
No 343
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.04 E-value=0.0018 Score=62.85 Aligned_cols=66 Identities=12% Similarity=-0.085 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-----CCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 210 EQKERREQDLREGLQLYRTGKYEVAREKFESVLGS-----KPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 210 elkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i-----~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
++.....+.++++..+..+|+|++|+..|+++|++ -|+++..+..+.|+|..|..+|+|++|+..+
T Consensus 304 ~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~ 374 (490)
T 3n71_A 304 EMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYA 374 (490)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 33444445567777888999999999999999954 4777888999999999999999999998754
No 344
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.04 E-value=0.00032 Score=51.66 Aligned_cols=41 Identities=15% Similarity=0.288 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 232 EVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 232 eEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
++|+..|+++++.+|++. .+|+|++.||..+|++++|+..+
T Consensus 2 ~~a~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~ 42 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNM---LLRFTLGKTYAEHEQFDAALPHL 42 (115)
T ss_dssp CCHHHHHHHHHTTTCCCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHccCHHHHHHHH
Confidence 468999999999999986 68999999999999999999876
No 345
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.04 E-value=0.0036 Score=54.52 Aligned_cols=83 Identities=7% Similarity=-0.055 Sum_probs=61.2
Q ss_pred hcCCCcchhHHHHHHHHHhhHHHHHHH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh--hhHHHHHH
Q 023871 188 RNSGVISNRVREIQMQNYMKKKEQKER---------REQDLREGLQLYRTGKYEVAREKFESVLGSKPTP--EESSVASY 256 (276)
Q Consensus 188 r~~G~i~~al~Eiq~~nYkk~Kelkkq---------ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~--~e~a~A~Y 256 (276)
...|++++++.. |.+..++..+ ..-....|..++..|+|++|+..|+++|.+.|.. .....+++
T Consensus 104 ~~~G~~~~A~~~-----~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 104 FAQGFLQTAWET-----QEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHTTCHHHHHHH-----HHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHCCCHHHHHHH-----HHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 356666666444 4444444322 2223467888899999999999999999888763 22357899
Q ss_pred HHhHHHHhcCChhHHHhhh
Q 023871 257 NVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 257 N~AcCyaKLgq~~eAI~aL 275 (276)
|.+.+|..+|++++|+..|
T Consensus 179 ~la~~~~~~g~~~~A~~~l 197 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQL 197 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999876
No 346
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.00 E-value=0.00072 Score=61.95 Aligned_cols=56 Identities=11% Similarity=0.141 Sum_probs=42.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCC--CChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSK--PTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~--P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.+.-|..+..+|++++|+..|++|+... |.. ...++||++.|+.++|+.++|+..|
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~--~~da~~~~glaL~~lGr~deA~~~l 231 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEAC--ARAIAWYLAMARRSQGNESAAVALL 231 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT--HHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccc--cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4677888888888888888888888433 442 2457888888888888888888766
No 347
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.0013 Score=57.95 Aligned_cols=58 Identities=19% Similarity=0.290 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh--------------hHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPE--------------ESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~--------------e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
-+++|..+++.|+|++|+..|.++|...|+.. ....+++|++..|.++|+|++|++.+
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~ 78 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFI 78 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 35889999999999999999999999888752 22467999999999999999999764
No 348
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=96.99 E-value=0.0019 Score=58.61 Aligned_cols=70 Identities=19% Similarity=0.284 Sum_probs=52.0
Q ss_pred ceeEEeee-CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-c-cCceEEEEeecCCC
Q 023871 95 YGLKFAKG-RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPLLMKMQKRYGK 171 (276)
Q Consensus 95 LGl~f~e~-~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-r-~gpv~L~l~R~~~~ 171 (276)
|||.+... ...+++|..|.+++.|+++| |++||+|+.+... +..++......+.. + ..++.|++.|..|+
T Consensus 231 lGi~~~~~~~~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~------~v~~~~~l~~~l~~~~~g~~v~l~v~R~~g~ 303 (324)
T 1y8t_A 231 LGVQVTNDKDTLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDR------PINSADALVAAVRSKAPGATVALTFQDPSGG 303 (324)
T ss_dssp CCEEEESCSSSSSEEEEEECTTSTTTTTT-CCTTCEEEEETTE------ECCSHHHHHHHHHTSCTTCEEEEEEECSSCC
T ss_pred cceEeeeccCCCceEEEEECCCChHHHcC-CCCCCEEEEECCE------ECCCHHHHHHHHHhcCCCCEEEEEEEECCCC
Confidence 78888764 35689999999999999999 9999999998642 23344455556653 2 34689999885454
No 349
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=96.96 E-value=0.0011 Score=50.19 Aligned_cols=57 Identities=16% Similarity=0.309 Sum_probs=43.4
Q ss_pred CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc--cCceEEEEeec
Q 023871 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VGPLLMKMQKR 168 (276)
Q Consensus 104 dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r--~gpv~L~l~R~ 168 (276)
..|++|..|.+++.|++ | |++||+|+++... .+ .++.....+|+.. ..++.|.+.|.
T Consensus 4 ~~Gv~V~~V~~~spA~~-G-L~~GD~Il~InG~---~v---~~~~~l~~~l~~~~~g~~v~l~v~R~ 62 (94)
T 2kl1_A 4 AKGVYVMSVLPNMPAAG-R-LEAGDRIAAIDGQ---PI---NTSEQIVSYVREKQAGDRVRVTFIRD 62 (94)
T ss_dssp CCCEECCCCCTTSTTBT-T-BCTTCEEEEETTB---CC---CCHHHHHHHHHHSCTTCCEEEEEEET
T ss_pred CCcEEEEEECCCChHHh-C-CCCCCEEEEECCE---EC---CCHHHHHHHHHhCCCCCEEEEEEEEC
Confidence 45799999999999998 8 9999999998743 22 3344556666643 45789999985
No 350
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=96.92 E-value=0.0014 Score=50.01 Aligned_cols=58 Identities=10% Similarity=0.151 Sum_probs=42.5
Q ss_pred CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-c-cCceEEEEeec
Q 023871 103 RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPLLMKMQKR 168 (276)
Q Consensus 103 ~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-r-~gpv~L~l~R~ 168 (276)
...|++|..|.+++.|++ | |++||+|+++-.. .+ ..+.....++.. + ..++.|.+.|.
T Consensus 5 ~~~Gv~V~~V~~~spA~~-G-L~~GD~I~~Ing~---~v---~~~~dl~~~l~~~~~g~~v~l~v~R~ 64 (100)
T 3i18_A 5 TYDGVYVMSVKDDVPAAD-V-LHAGDLITEIDGN---AF---KSSQEFIDYIHSKKVGDTVKINYKHG 64 (100)
T ss_dssp CCCCEEEEEECTTSGGGG-T-CCTTCEEEEETTB---CC---SSHHHHHHHHHTSCTTCEEEEEEEET
T ss_pred eCCCEEEEEeCCCCchHH-C-CCCCCEEEEECCE---EC---CCHHHHHHHHHhCCCCCEEEEEEEEC
Confidence 356999999999999995 7 9999999998643 33 334444555553 2 35789998884
No 351
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.92 E-value=0.0015 Score=62.04 Aligned_cols=58 Identities=10% Similarity=-0.133 Sum_probs=51.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcC-----CCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGS-----KPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i-----~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
..+-|..+..+|+|++|+..|+++|++ -|+.+..+..++|+|..|..+|++++|+..+
T Consensus 332 ~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~ 394 (429)
T 3qwp_A 332 LDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNL 394 (429)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 346677778899999999999999954 5888888999999999999999999999865
No 352
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=96.90 E-value=0.00081 Score=67.20 Aligned_cols=68 Identities=18% Similarity=0.272 Sum_probs=49.8
Q ss_pred cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeec
Q 023871 94 PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR 168 (276)
Q Consensus 94 PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~ 168 (276)
-+|+.+... .||++|..|.+||.|+++| |++||+|+++... .| ..+++-..+...+ ...+|.|.+.|.
T Consensus 486 ~lG~~~~~~-~~gv~V~~V~~~spA~~AG-L~~GD~I~aInG~---~v-~~~~l~~~l~~~~-~g~~v~l~v~R~ 553 (597)
T 4fgm_A 486 NFGAKYKAS-PQGLDVLNVYHDESAYHAG-LSAGDKIIAIDHL---QA-TEQSVKRILERYI-PGDTVTIHAFRR 553 (597)
T ss_dssp CCSEEEEEE-TTEEEEEEECTTSHHHHHT-CCTTCEEEEETTE---EC-CTTTHHHHHTTCC-TTCEEEEEEEET
T ss_pred ccceEEecc-CCeEEEEEeCCCChHHHCC-CCCCCEEEEECCE---EC-CHHHHHHHHHhcC-CCCEEEEEEEEC
Confidence 378888765 4689999999999999999 9999999998743 44 3444444433222 245788888884
No 353
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=96.88 E-value=0.00066 Score=50.49 Aligned_cols=68 Identities=15% Similarity=0.155 Sum_probs=45.9
Q ss_pred CcceeEEeeeCCC---CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc--ccCceEEEEee
Q 023871 93 QPYGLKFAKGRDG---GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ--RVGPLLMKMQK 167 (276)
Q Consensus 93 KPLGl~f~e~~dG---gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~--r~gpv~L~l~R 167 (276)
+-+|+.-... +| |+.|..+.|++.|+++| |++||+|+.+... .+- ++.....++.. ...++.|.+.|
T Consensus 5 ~~~~~~p~~~-~g~~~G~~V~~~~~~s~A~~aG-l~~GD~I~~ing~---~v~---~~~d~~~~~~~~~~g~~v~l~v~R 76 (87)
T 2i6v_A 5 QYVRLSQVKR-DDKVLGYRVSPGKDPVLFESIG-LQDGDMAVALNGL---DLT---DPNVMNTLFQSMNEMTEMSLTVER 76 (87)
T ss_dssp GTEEEEEEEE-TTEEEEEEEEECSCHHHHHHTT-CCTTCEEEEETTE---ETT---CHHHHHHHHHTGGGCSEEEEEEEE
T ss_pred hccceEEEee-CCeEEEEEEEeCCCCCHHHHCC-CCCCCEEEEECCE---ECC---CHHHHHHHHHhcCCCCEEEEEEEE
Confidence 4456555543 45 77788888888889999 9999999998743 333 33333344442 24578999988
Q ss_pred c
Q 023871 168 R 168 (276)
Q Consensus 168 ~ 168 (276)
.
T Consensus 77 ~ 77 (87)
T 2i6v_A 77 D 77 (87)
T ss_dssp T
T ss_pred C
Confidence 4
No 354
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.86 E-value=0.0012 Score=56.96 Aligned_cols=60 Identities=22% Similarity=0.335 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCC---CChh-------------------hHHHHHHHHhHHHHhcCChhHHHhh
Q 023871 217 QDLREGLQLYRTGKYEVAREKFESVLGSK---PTPE-------------------ESSVASYNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~---P~~~-------------------e~a~A~YN~AcCyaKLgq~~eAI~a 274 (276)
-.+--|..+|..++|..|+..|.+||... |+.. ....+.|.+|.||.+++++++||.-
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~ 144 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAI 144 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHH
Confidence 34678999999999999999999998432 1110 0135899999999999999999998
Q ss_pred hC
Q 023871 275 IE 276 (276)
Q Consensus 275 LE 276 (276)
||
T Consensus 145 Le 146 (167)
T 3ffl_A 145 LD 146 (167)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 355
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=96.86 E-value=0.00055 Score=52.05 Aligned_cols=55 Identities=16% Similarity=0.340 Sum_probs=42.1
Q ss_pred CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc--cCceEEEEeec
Q 023871 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VGPLLMKMQKR 168 (276)
Q Consensus 106 gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r--~gpv~L~l~R~ 168 (276)
|++|..|.|++.|++ | |++||+|+++... .+ .++.....+|+.. ..++.|++.|.
T Consensus 2 Gv~V~~V~~~spA~~-G-L~~GD~I~~InG~---~v---~~~~~l~~~l~~~~~g~~v~l~v~R~ 58 (91)
T 2kjp_A 2 GIYASSVVENMPAKG-K-IEVGDKIISADGK---NY---QSAEKLIDYISSKKAGDKVTLKIERE 58 (91)
T ss_dssp CSSCCCCCCSSCCSS-C-CCSSCEEEEETTB---CC---SSHHHHHHHHSSCCSSCEECEEEESS
T ss_pred ceEEEEECCCChHHH-c-CCCCCEEEEECCE---EC---CCHHHHHHHHHcCCCCCEEEEEEEEC
Confidence 688999999999999 8 9999999998743 33 3344566667654 45789999985
No 356
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=96.86 E-value=0.0022 Score=58.19 Aligned_cols=67 Identities=21% Similarity=0.323 Sum_probs=50.1
Q ss_pred ceeEEeee-----------CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-c-cCce
Q 023871 95 YGLKFAKG-----------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPL 161 (276)
Q Consensus 95 LGl~f~e~-----------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-r-~gpv 161 (276)
|||.+..- ...|++|..|.|++.|+++| |++||+|+++... +...+......|+. + ..++
T Consensus 223 lGi~~~~~~~~~~~~~g~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~------~v~~~~~l~~~l~~~~~g~~v 295 (318)
T 1te0_A 223 IGIGGREIAPLHAQGGGIDQLQGIVVNEVSPDGPAANAG-IQVNDLIISVDNK------PAISALETMDQVAEIRPGSVI 295 (318)
T ss_dssp CCEEEEECSCCCSSSSCSSSCCCEEEEEECTTSTTTTTC-CCTTCCEEEETTE------ECCCHHHHHHHHHTSCTTCEE
T ss_pred ceeEeeecchhHHHhccCCCCCcEEEEEeCCCChHHHCC-CCCCCEEEEECCE------EcCCHHHHHHHHHhcCCCCEE
Confidence 68877652 23589999999999999999 9999999998742 23344455666664 3 3578
Q ss_pred EEEEeec
Q 023871 162 LMKMQKR 168 (276)
Q Consensus 162 ~L~l~R~ 168 (276)
.|++.|.
T Consensus 296 ~l~v~R~ 302 (318)
T 1te0_A 296 PVVVMRD 302 (318)
T ss_dssp EEEEESS
T ss_pred EEEEEEC
Confidence 9999885
No 357
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.78 E-value=0.00094 Score=56.61 Aligned_cols=49 Identities=10% Similarity=0.182 Sum_probs=41.6
Q ss_pred HHHhhHHHHHHHH-HHHHHHHHHHHHcC-----------CHHHHHHHHHHHHcCCCChhhH
Q 023871 203 QNYMKKKEQKERR-EQDLREGLQLYRTG-----------KYEVAREKFESVLGSKPTPEES 251 (276)
Q Consensus 203 ~nYkk~Kelkkqa-e~~~~eGnaLfk~g-----------rYeEAI~~Ye~AL~i~P~~~e~ 251 (276)
..|+++-++.... +.+++.|++++.+| +|++|+..|++||+++|++..+
T Consensus 67 ~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 67 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 6688888888764 55789999999875 8999999999999999998654
No 358
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=96.76 E-value=0.0017 Score=49.43 Aligned_cols=57 Identities=11% Similarity=0.201 Sum_probs=42.7
Q ss_pred eEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhccc--CceEEEEeecCC
Q 023871 107 TYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV--GPLLMKMQKRYG 170 (276)
Q Consensus 107 v~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~--gpv~L~l~R~~~ 170 (276)
.+|.+|.+++-|+++| |++||+|+++... . ...+..+..++.... .++.|.+.|.-+
T Consensus 4 p~V~~V~~~spA~~aG-l~~GD~I~~ing~---~---v~~~~d~~~~l~~~~~~~~v~l~v~R~g~ 62 (95)
T 3id1_A 4 PVVGEIAANSIAAEAQ-IAPGTELKAVDGI---E---TPDWDAVRLQLVDKIGDESTTITVAPFGS 62 (95)
T ss_dssp CBEEEECTTSHHHHTT-CCTTCEEEEETTE---E---CSSHHHHHHHHHHTTTCSEEEEEEECTTC
T ss_pred CEEEeeCCCCHHHHcC-CCCCCEEEEECCE---E---CCCHHHHHHHHHHhcCCCcEEEEEEECCC
Confidence 4689999999999999 9999999998642 2 334445555565433 478999999764
No 359
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.74 E-value=0.0038 Score=59.60 Aligned_cols=57 Identities=9% Similarity=-0.167 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcC-----CCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLGS-----KPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~i-----~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
++++....+.|+|++|+..|+++|++ -|+++..+..+.|+|..|..+|+|++|+..+
T Consensus 302 le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~ 363 (433)
T 3qww_A 302 IEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYG 363 (433)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 45555556789999999999999964 5888888999999999999999999998754
No 360
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=96.70 E-value=0.0039 Score=54.00 Aligned_cols=70 Identities=9% Similarity=-0.023 Sum_probs=58.4
Q ss_pred HHHhhHHHHHHH-HHHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHc-CCCChhhHHHHHHHHhHHHHhcC
Q 023871 203 QNYMKKKEQKER-REQDLREGLQLY-------RTGKY-------EVAREKFESVLG-SKPTPEESSVASYNVACCYSKLN 266 (276)
Q Consensus 203 ~nYkk~Kelkkq-ae~~~~eGnaLf-------k~grY-------eEAI~~Ye~AL~-i~P~~~e~a~A~YN~AcCyaKLg 266 (276)
..|.++-++... .+-|++-|..+. +.|++ ++|+..|++||. ++|++. .+|++.+..+.++|
T Consensus 37 ~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~---~~~~~~~~~~~~~~ 113 (308)
T 2ond_A 37 FAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM---LLYFAYADYEESRM 113 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCH---HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHhcC
Confidence 568887777655 456788887775 46886 999999999999 799885 58999999999999
Q ss_pred ChhHHHhhh
Q 023871 267 QVPLLLALI 275 (276)
Q Consensus 267 q~~eAI~aL 275 (276)
++++|++.+
T Consensus 114 ~~~~A~~~~ 122 (308)
T 2ond_A 114 KYEKVHSIY 122 (308)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999999865
No 361
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.70 E-value=0.0033 Score=61.51 Aligned_cols=83 Identities=13% Similarity=-0.001 Sum_probs=37.3
Q ss_pred HHHhhcCCCcchhHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHcCC----------HHHHHHHHHHHHcCCCChhhHH
Q 023871 184 IRAERNSGVISNRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTGK----------YEVAREKFESVLGSKPTPEESS 252 (276)
Q Consensus 184 ~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkqa-e~~~~eGnaLfk~gr----------YeEAI~~Ye~AL~i~P~~~e~a 252 (276)
+++-+..|.+++.. ...|.++-++..+- ..|..+|..+.+.|+ |++|+..|++||..+|+++
T Consensus 35 ~~~~~~~~~~~eea----l~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y--- 107 (567)
T 1dce_A 35 VFQKRQAGELDESV----LELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY--- 107 (567)
T ss_dssp HHHHHHTTCCSHHH----HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH---
T ss_pred HHHHHHcCCCCHHH----HHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCH---
Confidence 34445566665431 12233333333331 234444444444444 5555555555555555443
Q ss_pred HHHHHHhHHHHhcC--ChhHHHh
Q 023871 253 VASYNVACCYSKLN--QVPLLLA 273 (276)
Q Consensus 253 ~A~YN~AcCyaKLg--q~~eAI~ 273 (276)
.+|++++-+..+++ +|+++++
T Consensus 108 ~aW~hR~w~l~~l~~~~~~~el~ 130 (567)
T 1dce_A 108 GTWHHRCWLLSRLPEPNWARELE 130 (567)
T ss_dssp HHHHHHHHHHHTCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHcccccHHHHHH
Confidence 34555555555554 3344443
No 362
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=96.57 E-value=0.0043 Score=56.79 Aligned_cols=126 Identities=8% Similarity=0.056 Sum_probs=86.8
Q ss_pred cccchhHHHHhhcccCceEEEEe-ec-CCCcccccccchHH----HHHHhhcCCCcchhHHHHHHHHHhhHHHHHHHHHH
Q 023871 144 AAEYGRTMYTIRQRVGPLLMKMQ-KR-YGKMEQTGELSEKE----IIRAERNSGVISNRVREIQMQNYMKKKEQKERREQ 217 (276)
Q Consensus 144 a~~~g~~~~air~r~gpv~L~l~-R~-~~~~~~~~~~~e~~----~~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkqae~ 217 (276)
.+.+|.-..++.-..+.+.-.+. -+ ||++++-- -+-.+ -+..--..|+++++...++......-..+ .
T Consensus 64 ~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v-~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-----~ 137 (282)
T 4f3v_A 64 RRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV-TSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-----V 137 (282)
T ss_dssp GGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC-SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-----H
T ss_pred HHHHHHHHHHhcCChhhhhhhhccCCccccccccc-CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-----H
Confidence 34556555566666666666665 33 56665422 11122 13444588999999888877433333333 3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
.+..|+.+++.+||++|+..|+.++...++. ....++||.++++..+|++++|+..|+
T Consensus 138 ~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~-~~~~a~~~LG~al~~LG~~~eAl~~l~ 195 (282)
T 4f3v_A 138 AWMKAVVYGAAERWTDVIDQVKSAGKWPDKF-LAGAAGVAHGVAAANLALFTEAERRLT 195 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhccCCcc-cHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4689999999999999999999998764332 224689999999999999999998864
No 363
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=96.55 E-value=0.0029 Score=48.66 Aligned_cols=58 Identities=10% Similarity=0.178 Sum_probs=39.2
Q ss_pred CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeec
Q 023871 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR 168 (276)
Q Consensus 106 gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~ 168 (276)
|++|..+.|++.|+++| |++||+|+.+-.. .+-...++-..+..++ ...++.|.+.|.
T Consensus 38 G~~V~~~~pas~A~~aG-l~~GDvI~~ing~---~v~~~~d~~~~~~~~~-~g~~v~l~v~R~ 95 (105)
T 2i4s_A 38 GYRVSPGKDPVLFESIG-LQDGDMAVALNGL---DLTDPNVMNTLFQSMN-EMTEMSLTVERD 95 (105)
T ss_dssp EEEEEECSCTHHHHHHT-CCTTCEEEEETTE---ETTSTTHHHHHHHHHT-TCSEEEEEEEET
T ss_pred EEEEecCCCCCHHHHcC-CCCCCEEEEECCE---ECCCHHHHHHHHHhcC-CCCeEEEEEEEC
Confidence 56677777777779999 9999999998743 4433344333333322 245789999884
No 364
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.52 E-value=0.0067 Score=57.50 Aligned_cols=59 Identities=12% Similarity=-0.043 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcC-----CCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 217 QDLREGLQLYRTGKYEVAREKFESVLGS-----KPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i-----~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
++++.-.++.+.|+|++|+..|+++|++ -|+++.....+.|++..|..+|+|++|+...
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~ 352 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYG 352 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4445666778899999999999999965 4777778899999999999999999998754
No 365
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=96.43 E-value=0.0058 Score=57.13 Aligned_cols=69 Identities=16% Similarity=0.249 Sum_probs=49.5
Q ss_pred ceeEEeee--CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceeccc--chhHHHHhhccc-CceEEEEeecC
Q 023871 95 YGLKFAKG--RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIRQRV-GPLLMKMQKRY 169 (276)
Q Consensus 95 LGl~f~e~--~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~--~g~~~~air~r~-gpv~L~l~R~~ 169 (276)
+|+.|... .+++++|..|.+++.|+++| |++||+|+++-.. +..+ ...+...|+... .++.|.+.|.-
T Consensus 87 iG~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~------~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g 159 (388)
T 1fc6_A 87 VGLEITYDGGSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGT------AVKGMSLYDVSDLLQGEADSQVEVVLHAPG 159 (388)
T ss_dssp CSEEEEECTTCSSCEEEEEECTTSHHHHTT-CCTTCEEEEETTE------ECTTCCHHHHHHHHCBSTTCEEEEEEEETT
T ss_pred EEEEEEEeecCCCcEEEEEeCCCChHHHcC-CCCCCEEEEECCE------ECCCCCHHHHHHHHhcCCCCEEEEEEEeCC
Confidence 67777654 25799999999999999999 9999999998753 2222 133455666443 35788888764
Q ss_pred C
Q 023871 170 G 170 (276)
Q Consensus 170 ~ 170 (276)
.
T Consensus 160 ~ 160 (388)
T 1fc6_A 160 A 160 (388)
T ss_dssp E
T ss_pred C
Confidence 4
No 366
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=96.37 E-value=0.0066 Score=55.41 Aligned_cols=56 Identities=20% Similarity=0.375 Sum_probs=44.6
Q ss_pred CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeec
Q 023871 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR 168 (276)
Q Consensus 105 Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~ 168 (276)
.|++|.+|.+++.|+++| |++||+|+.+... .+ .++.+...+|+. ..++.|.+.|.
T Consensus 256 ~gv~V~~V~~~spA~~aG-l~~GDvI~~ing~---~v---~~~~~l~~~l~~-~~~v~l~v~R~ 311 (325)
T 1lcy_A 256 HGVLIHKVILGSPAHRAG-LRPGDVILAIGEQ---MV---QNAEDVYEAVRT-QSQLAVQIRRG 311 (325)
T ss_dssp SCEEEEEECTTSHHHHHT-CCTTCEEEEETTE---EC---CSHHHHHHHHTT-CSSEEEEEEET
T ss_pred CCeEEEEeCcCChHHHCC-CCCCCEEEEECCE---Ec---CCHHHHHHHHhC-CCeEEEEEEEC
Confidence 599999999999999999 9999999998742 33 344455666665 47899999884
No 367
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=96.36 E-value=0.0096 Score=54.32 Aligned_cols=97 Identities=5% Similarity=-0.177 Sum_probs=75.4
Q ss_pred cccccccchHH-HHHHhhcCCCcchhHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCC
Q 023871 172 MEQTGELSEKE-IIRAERNSGVISNRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTG--KYEVAREKFESVLGSKPT 247 (276)
Q Consensus 172 ~~~~~~~~e~~-~~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkqa-e~~~~eGnaLfk~g--rYeEAI~~Ye~AL~i~P~ 247 (276)
+-...+..+.- .+|+-+..|.++.. ....+.++-++...- ..|..+|..|..++ +|++||..++.+|.++|+
T Consensus 26 i~y~~~y~~~~~~~~a~~~~~e~s~~----aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk 101 (306)
T 3dra_A 26 ILYDEDYKQIMGLLLALMKAEEYSER----ALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK 101 (306)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTCCSHH----HHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT
T ss_pred eeeCHHHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc
Confidence 33444444444 58998988888743 134566666666553 56899999999999 999999999999999999
Q ss_pred hhhHHHHHHHHhHHH----Hhc---CChhHHHhhh
Q 023871 248 PEESSVASYNVACCY----SKL---NQVPLLLALI 275 (276)
Q Consensus 248 ~~e~a~A~YN~AcCy----aKL---gq~~eAI~aL 275 (276)
+. .+|+++..|. .++ ++++++++.+
T Consensus 102 ~y---~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~ 133 (306)
T 3dra_A 102 NY---QIWNYRQLIIGQIMELNNNDFDPYREFDIL 133 (306)
T ss_dssp CC---HHHHHHHHHHHHHHHHTTTCCCTHHHHHHH
T ss_pred cH---HHHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence 96 6899999999 888 7888888765
No 368
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=96.30 E-value=0.0029 Score=46.64 Aligned_cols=55 Identities=16% Similarity=0.463 Sum_probs=41.3
Q ss_pred eEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc-cCceEEEEeec
Q 023871 107 TYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR-VGPLLMKMQKR 168 (276)
Q Consensus 107 v~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r-~gpv~L~l~R~ 168 (276)
++|..|.+++.|+++| +++||+|+.+... +..++......+... ..++.|.+.|.
T Consensus 6 ~~V~~v~~~spA~~aG-l~~GD~I~~ing~------~v~~~~~~~~~l~~~~g~~v~l~v~R~ 61 (91)
T 2zpm_A 6 PVLENVQPNSAASXAG-LQAGDRIVXVDGQ------PLTQWVTFVMLVRDNPGXSLALEIERQ 61 (91)
T ss_dssp CBCSEECTTSHHHHTT-CCTTCEEEEETTE------ECCCHHHHHHHHHHCTTCCEEEEEEET
T ss_pred eEEEEECCCChHHhcC-CCCCCEEEEECCe------EcCCHHHHHHHHhcCCCCeEEEEEEEC
Confidence 5788999999999999 9999999998742 333445555566644 34789999884
No 369
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.29 E-value=0.011 Score=44.25 Aligned_cols=63 Identities=13% Similarity=0.042 Sum_probs=45.5
Q ss_pred cCCCcchhHHHHHHHHHhhHHHHH--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHh
Q 023871 189 NSGVISNRVREIQMQNYMKKKEQK--------ERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVA 259 (276)
Q Consensus 189 ~~G~i~~al~Eiq~~nYkk~Kelk--------kqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~A 259 (276)
+.|++..|+.-+++. .++. ....-...-|..++++|+|++|+..|++||.++|++. .+..|+.
T Consensus 17 ~~~~y~~A~~W~~~A-----l~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~---~~~~n~~ 87 (104)
T 2v5f_A 17 TEADYYHTELWMEQA-----LRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ---RANGNLK 87 (104)
T ss_dssp HTTCHHHHHHHHHHH-----HHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHH
T ss_pred HccchHHHHHHHHHH-----HHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---HHHhhHH
Confidence 667777776655552 2221 1122235778999999999999999999999999996 4567766
No 370
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.22 E-value=0.013 Score=44.15 Aligned_cols=57 Identities=18% Similarity=-0.006 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 216 EQDLREGLQLYRTGK---YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 216 e~~~~eGnaLfk~gr---YeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+.+...|..|+-.++ .++|...+++||+++|++. .+++..+..+.+.|++++||..+
T Consensus 7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~---rA~~~lg~~~~~~g~y~~Ai~~w 66 (93)
T 3bee_A 7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNE---AALSLIANDHFISFRFQEAIDTW 66 (93)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCH---HHHHHHHHHHHHcCCHHHHHHHH
Confidence 446688999965544 8999999999999999996 68999999999999999999875
No 371
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.16 E-value=0.017 Score=47.65 Aligned_cols=57 Identities=7% Similarity=-0.032 Sum_probs=39.4
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh----cCChhHHHhhh
Q 023871 218 DLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVPLLLALI 275 (276)
Q Consensus 218 ~~~eGnaLfk----~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK----Lgq~~eAI~aL 275 (276)
+++-|..++. .+++++|+.+|++|++..|.+ ....+++|++.||.. .+++++|+..+
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~-~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESD-AAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH-HHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc-chHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 3455666655 678888888888888877742 113578888888877 77777777654
No 372
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=96.13 E-value=0.0056 Score=56.80 Aligned_cols=68 Identities=16% Similarity=0.329 Sum_probs=50.4
Q ss_pred ceeEEeee-----------CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc--cCce
Q 023871 95 YGLKFAKG-----------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VGPL 161 (276)
Q Consensus 95 LGl~f~e~-----------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r--~gpv 161 (276)
||+.+..- ...|++|.+|.+++.|+++| |++||+|+++-.. +..++......|+.. ..++
T Consensus 242 lGv~~~~~~~~~a~~~gl~~~~G~~V~~V~~~spA~~aG-L~~GDvI~~ing~------~v~~~~~l~~~l~~~~~g~~v 314 (345)
T 3stj_A 242 LGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAG-VKAGDIITSLNGK------PLNSFAELRSRIATTEPGTKV 314 (345)
T ss_dssp CCEEEEECCHHHHHHTTCSCCSSEEEEEECTTSHHHHHT-CCTTCEECEETTE------ECSCHHHHHHHHHTSCTTCEE
T ss_pred cceeeEeecHHHHHhcCCCCCceEEEEEeccCChHHHcC-CCCCCEEEEECCE------ECCCHHHHHHHHHhcCCCCEE
Confidence 67776542 23589999999999999999 9999999997642 334555556666642 4468
Q ss_pred EEEEeecC
Q 023871 162 LMKMQKRY 169 (276)
Q Consensus 162 ~L~l~R~~ 169 (276)
.|++.|.-
T Consensus 315 ~l~v~R~g 322 (345)
T 3stj_A 315 KLGLLRNG 322 (345)
T ss_dssp EEEEEETT
T ss_pred EEEEEECC
Confidence 99999853
No 373
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=96.11 E-value=0.0077 Score=57.38 Aligned_cols=58 Identities=14% Similarity=0.261 Sum_probs=48.3
Q ss_pred CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeecC
Q 023871 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRY 169 (276)
Q Consensus 105 Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~~ 169 (276)
.|++|.+|.+++.|+++| |++||+|+.+... +..++.....+|+...+++.|.+.|.-
T Consensus 363 ~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~------~v~~~~~~~~~l~~~~~~v~l~v~R~g 420 (436)
T 4a8c_A 363 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRD------RVNSIAEMRKVLAAKPAIIALQIVRGN 420 (436)
T ss_pred CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCE------ECCCHHHHHHHHHhCCCeEEEEEEECC
Confidence 489999999999999999 9999999998743 345566677777877789999999853
No 374
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=96.05 E-value=0.03 Score=44.91 Aligned_cols=78 Identities=12% Similarity=0.094 Sum_probs=53.4
Q ss_pred ceEEEEecC---cceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc--cC
Q 023871 85 EEYEVEIEQ---PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VG 159 (276)
Q Consensus 85 ~~y~V~l~K---PLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r--~g 159 (276)
+.++|+|.| .+|+.+..+.. +.+|..|.+. +..+| +++||+|+.+... .|- -....++...|+.. ..
T Consensus 12 ~~~~V~L~Kg~~G~GFsI~~~~~-g~~V~~I~~~--~~~aG-L~~GD~Il~VNG~---~v~-~~~h~evv~~lk~~~~G~ 83 (113)
T 3soe_A 12 LLVTIPLIKGPKGFGFAIADSPT-GQKVKMILDS--QWCQG-LQKGDIIKEIYHQ---NVQ-NLTHLQVVEVLKQFPVGA 83 (113)
T ss_dssp EEEEEEEECBTTBSSEEEEEETT-EEEEEEESCG--GGSTT-CCTTCEEEEETTE---ECT-TSCHHHHHHHHHHSCTTC
T ss_pred CEEEEEEEECCCcccEEEeCCCC-CcEEEEecCh--HHhCC-CCCCCEEEEECCE---ECC-CCCHHHHHHHHHcCCCCC
Confidence 567888876 57888854433 6779999883 55565 9999999998742 221 11334677778853 34
Q ss_pred ceEEEEeecCC
Q 023871 160 PLLMKMQKRYG 170 (276)
Q Consensus 160 pv~L~l~R~~~ 170 (276)
+|.|.+.|.-.
T Consensus 84 ~v~L~V~R~g~ 94 (113)
T 3soe_A 84 DVPLLILRGGP 94 (113)
T ss_dssp EEEEEEEESSC
T ss_pred EEEEEEEECCc
Confidence 79999999543
No 375
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=95.98 E-value=0.015 Score=46.64 Aligned_cols=59 Identities=14% Similarity=0.226 Sum_probs=41.0
Q ss_pred eeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-c-cCceEEEEee
Q 023871 100 AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPLLMKMQK 167 (276)
Q Consensus 100 ~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-r-~gpv~L~l~R 167 (276)
-....++++|..|.+++.|+++ |++||+|+.+-.. . ...+......++. + ..++.|++ |
T Consensus 20 ~~~~~~gv~V~~V~~~spA~~a--L~~GD~Il~InG~---~---v~~~~dl~~~l~~~~~g~~v~l~V-R 80 (125)
T 2hga_A 20 QGHQPDGVQIDSVVPGSPASKV--LTPGLVIESINGM---P---TSNLTTYSAALKTISVGEVINITT-D 80 (125)
T ss_dssp ---CCCCEEEEEECSSSGGGGT--SCTTCEEEEETTE---E---CSSHHHHHHHHTTCCTTCEEEEEE-T
T ss_pred ccCCCCceEEEEECCCChHHHh--cCCCCEEEEECCE---E---cCCHHHHHHHHHhcCCCCEEEEEE-E
Confidence 3335679999999999999988 9999999998642 3 3344444555552 3 34678888 5
No 376
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=95.93 E-value=0.033 Score=51.74 Aligned_cols=47 Identities=21% Similarity=-0.000 Sum_probs=41.3
Q ss_pred HcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 227 RTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 227 k~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
..|++++|+..|++||+.+|++. .+|.+.+.++.++|++++|...+|
T Consensus 403 ~~~~~~~A~~~~e~al~~~p~~~---~~~~~~~~~~~~~g~~~~Ar~~~~ 449 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKYGDIP---EYVLAYIDYLSHLNEDNNTRVLFE 449 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HcCChhHHHHHHHHHHHHCCCCH---HHHHHHHHHHHhCCCHhhHHHHHH
Confidence 58999999999999999999885 578999999999999999887653
No 377
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=95.92 E-value=0.0094 Score=49.24 Aligned_cols=53 Identities=15% Similarity=0.090 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHcC----CHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh----cCChhHHHhhh
Q 023871 217 QDLREGLQLYRTG----KYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVPLLLALI 275 (276)
Q Consensus 217 ~~~~eGnaLfk~g----rYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK----Lgq~~eAI~aL 275 (276)
.++.-|..+.. + ++++|+.+|++|++ +.+ ..+++|++.||.. .+++++|+..+
T Consensus 52 a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 112 (212)
T 3rjv_A 52 ALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGS---KSGEIVLARVLVNRQAGATDVAHAITLL 112 (212)
T ss_dssp HHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTC---HHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCC---HHHHHHHHHHHHcCCCCccCHHHHHHHH
Confidence 34566666655 6 88888888888865 344 3578899988888 88888888765
No 378
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.88 E-value=0.012 Score=57.67 Aligned_cols=69 Identities=9% Similarity=-0.141 Sum_probs=59.0
Q ss_pred HHHhhHHHHHHH-HHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcC-ChhHHHhh
Q 023871 203 QNYMKKKEQKER-REQDLREGLQLYRTG--KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN-QVPLLLAL 274 (276)
Q Consensus 203 ~nYkk~Kelkkq-ae~~~~eGnaLfk~g--rYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLg-q~~eAI~a 274 (276)
.+|.++-+...+ ...|..++..+.+.+ +|++||+.|+++|+++|++. .||+++.-+..+++ .++++++.
T Consensus 94 ~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~---~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 94 GFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF---HCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccc---cHHHHHHHHHHHcCCChHHHHHH
Confidence 556666666555 366899999999999 77999999999999999996 69999999999999 88888875
No 379
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=95.87 E-value=0.0087 Score=51.30 Aligned_cols=57 Identities=9% Similarity=0.127 Sum_probs=39.3
Q ss_pred CeEEEEeCCCCCcccccCcccC-CEEEEeecccCCcceecccchhHHHHhhcc-cCceEEEEeec
Q 023871 106 GTYIDAIAPGGSADKTGMFQVG-DKVLATSAVFGTEIWPAAEYGRTMYTIRQR-VGPLLMKMQKR 168 (276)
Q Consensus 106 gv~V~~v~~ggnA~k~G~i~vG-D~l~~~Sa~fGdevw~a~~~g~~~~air~r-~gpv~L~l~R~ 168 (276)
|++|..|.|++-|+++| |++| |+|+++... .+-...++- ...++.. ..++.|.+.|.
T Consensus 17 G~~V~~V~~~SpA~~AG-L~~G~D~I~~ing~---~v~~~~~~~--~~~~~~~~g~~v~l~v~R~ 75 (209)
T 3rle_A 17 GYHVLRVQENSPGHRAG-LEPFFDFIVSINGS---RLNKDNDTL--KDLLKANVEKPVKMLIYSS 75 (209)
T ss_dssp EEEEEEECTTSHHHHTT-CCTTTEEEEEETTE---ECCSSSSHH--HHHHHHTTTSCEEEEEEET
T ss_pred EEEEEEECCCCHHHHCC-CCcCCeEEEEECCE---ECcCHHHHH--HHHHhcCCCCEEEEEEEec
Confidence 89999999999999999 9999 999998753 222222221 1122222 45678888775
No 380
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=95.86 E-value=0.0082 Score=55.29 Aligned_cols=68 Identities=22% Similarity=0.397 Sum_probs=49.7
Q ss_pred ceeEEeeeCC------CCeEEEEeCCCCCcccccCccc-----------CCEEEEeecccCCcceecccchhHHHHhhc-
Q 023871 95 YGLKFAKGRD------GGTYIDAIAPGGSADKTGMFQV-----------GDKVLATSAVFGTEIWPAAEYGRTMYTIRQ- 156 (276)
Q Consensus 95 LGl~f~e~~d------Ggv~V~~v~~ggnA~k~G~i~v-----------GD~l~~~Sa~fGdevw~a~~~g~~~~air~- 156 (276)
|||.+..... .|++|.+|.+++.|+++| |++ ||+|+++-.. +..++...+.++..
T Consensus 235 lGi~~~~~~~~~~~~~~Gv~V~~V~~~spA~~AG-l~~~~~~~~~~l~~GDvI~~ing~------~v~~~~dl~~~l~~~ 307 (348)
T 3qo6_A 235 LGIKFAPDQSVEQLGVSGVLVLDAPPSGPAGKAG-LQSTKRDGYGRLVLGDIITSVNGT------KVSNGSDLYRILDQC 307 (348)
T ss_dssp CCCEECCTTTTTTTTCSSEEEEECCSSSHHHHHT-CCCCEECSSSCEECCCEECEETTB------CCSSSHHHHHHHTTC
T ss_pred cCcEEccchhhhhcCCceEEEEEecCCChHHHcC-CccccccccCCCCCCCEEEEECCE------EeCCHHHHHHHHHhC
Confidence 6787754321 499999999999999999 888 9999997643 33344556666653
Q ss_pred cc-CceEEEEeecC
Q 023871 157 RV-GPLLMKMQKRY 169 (276)
Q Consensus 157 r~-gpv~L~l~R~~ 169 (276)
+. .++.|++.|.-
T Consensus 308 ~~g~~v~l~v~R~g 321 (348)
T 3qo6_A 308 KVGDEVTVEVLRGD 321 (348)
T ss_dssp CTTCEEEEEEECSS
T ss_pred CCcCEEEEEEEECC
Confidence 33 46899998853
No 381
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.79 E-value=0.0073 Score=51.02 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPE 249 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~ 249 (276)
+|.-|...++.|+|++|+..++++|+++|++.
T Consensus 74 lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 74 VFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 34445555555555555555555555555443
No 382
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=95.56 E-value=0.012 Score=56.43 Aligned_cols=57 Identities=12% Similarity=0.251 Sum_probs=47.2
Q ss_pred CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeec
Q 023871 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR 168 (276)
Q Consensus 105 Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~ 168 (276)
+|++|.+|.+++.|+++| |++||+|+.+... +..++.....+|+....++.|.+.|.
T Consensus 386 ~Gv~V~~V~~gspA~~aG-L~~GD~I~~Vng~------~v~~~~~~~~~l~~~~~~v~l~v~R~ 442 (451)
T 3pv2_A 386 IGVQVVGASENSAGWRAG-IRPGDIIISANKK------PVTDVKSLQTIAQEKKKELLVQVLRG 442 (451)
T ss_dssp EEEEEEEECTTSHHHHHT-CCTTCEEEEETTE------ECCSHHHHHHHTTSSCSCEEEEEEET
T ss_pred CceEEEEECCCCHHHHcC-CCCCCEEEEECCE------ECCCHHHHHHHHhcCCCeEEEEEEEC
Confidence 489999999999999999 9999999998642 44555666777777677899999884
No 383
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.52 E-value=0.051 Score=60.28 Aligned_cols=77 Identities=13% Similarity=0.054 Sum_probs=59.2
Q ss_pred CCcchhHHHHH--HHHHhhHHHHHHHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhc
Q 023871 191 GVISNRVREIQ--MQNYMKKKEQKERR---EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL 265 (276)
Q Consensus 191 G~i~~al~Eiq--~~nYkk~Kelkkqa---e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKL 265 (276)
++.++++...- ..+|.++-+.-.+. +-|++-|.++.+.|+|+|||++|.+| ++. .+|++++-|+.++
T Consensus 1076 ~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~---say~eVa~~~~~l 1147 (1630)
T 1xi4_A 1076 DVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDP---SSYMEVVQAANTS 1147 (1630)
T ss_pred CCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CCh---HHHHHHHHHHHHc
Confidence 45555433332 25677776666553 55899999999999999999999887 443 5799999999999
Q ss_pred CChhHHHhhh
Q 023871 266 NQVPLLLALI 275 (276)
Q Consensus 266 gq~~eAI~aL 275 (276)
|++++||+.|
T Consensus 1148 GkyEEAIeyL 1157 (1630)
T 1xi4_A 1148 GNWEELVKYL 1157 (1630)
T ss_pred CCHHHHHHHH
Confidence 9999999877
No 384
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.50 E-value=0.0085 Score=43.79 Aligned_cols=60 Identities=8% Similarity=0.006 Sum_probs=45.4
Q ss_pred HHhhcCCCcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh
Q 023871 185 RAERNSGVISNRVREIQMQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE 249 (276)
Q Consensus 185 ~~~r~~G~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~ 249 (276)
..-...|++++++..++ ++.++... ..-++..|..+++.|+|++|+..|++||++.|+..
T Consensus 15 ~~~~~~g~~~~A~~~~~-----~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 75 (100)
T 3ma5_A 15 QEHLKHDNASRALALFE-----ELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG 75 (100)
T ss_dssp HHHHHTTCHHHHHHHHH-----HHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHH-----HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence 44457788888865554 44444443 34577999999999999999999999999887654
No 385
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=95.50 E-value=0.014 Score=47.73 Aligned_cols=45 Identities=20% Similarity=0.347 Sum_probs=36.8
Q ss_pred ceEEEEec----CcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeec
Q 023871 85 EEYEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSA 135 (276)
Q Consensus 85 ~~y~V~l~----KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa 135 (276)
.+++++|. ..+|+.+. +| +|..|.+++.|+++| +++||+|+.+..
T Consensus 88 ~~~~v~l~~~~~~~lG~~~~---~g--~v~~v~~~s~a~~aG-l~~GD~I~~ing 136 (166)
T 1w9e_A 88 FERTITMHKDSTGHVGFIFK---NG--KITSIVKDSSAARNG-LLTEHNICEING 136 (166)
T ss_dssp TCEEEEEECCTTSCCSEEEE---TT--EEEEECTTSHHHHTT-CCSSEEEEEETT
T ss_pred CcEEEEEecCCCCcEeEEEe---CC--EEEEEccCCHHHHcC-CCCCCEEEEECC
Confidence 34667776 45788776 34 899999999999999 999999999875
No 386
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=95.46 E-value=0.017 Score=55.06 Aligned_cols=58 Identities=14% Similarity=0.312 Sum_probs=43.2
Q ss_pred CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcc--cCceEEEEeecC
Q 023871 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR--VGPLLMKMQKRY 169 (276)
Q Consensus 105 Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r--~gpv~L~l~R~~ 169 (276)
.|++|.+|.+++-|+++| |++||+|+++... . ..++......+... ...+.|++.|.-
T Consensus 263 ~G~~V~~V~~~spA~~aG-L~~GD~I~~vnG~---~---v~~~~~l~~~l~~~~~g~~v~l~v~R~g 322 (436)
T 4a8c_A 263 RGAFVSEVLPGSGSAKAG-VKAGDIITSLNGK---P---LNSFAELRSRIATTEPGTKVKLGLLRNG 322 (436)
T ss_pred cceEEEEECCCChHHHCC-CCCCCEEEEECCE---E---CCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 589999999999999999 9999999998743 2 33444445555432 357888888853
No 387
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.32 E-value=0.031 Score=49.14 Aligned_cols=57 Identities=12% Similarity=0.094 Sum_probs=46.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCC---ChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLGSKP---TPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P---~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
..-|..++..|+|++|+..+++++.... +......++.+.+.+|..+|+++.|...+
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 198 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASL 198 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 4668888999999999999999994422 22334678999999999999999998765
No 388
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=95.31 E-value=0.025 Score=54.04 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=40.6
Q ss_pred CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeecC
Q 023871 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRY 169 (276)
Q Consensus 106 gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~~ 169 (276)
.++|..|.||+.|+++| |++||+|+++-.. .+-.. . ....|+....+|.|.+.|.-
T Consensus 91 ~~~V~~V~~gsPA~~AG-L~~GD~I~~InG~---~v~~~-~---~~~~l~~~g~~v~l~v~R~g 146 (403)
T 3k50_A 91 NALISYVVPGSPAEEAG-LQRGHWIMMMNGD---YITKK-V---ESELLQGSTRQLQIGVYKEV 146 (403)
T ss_dssp EEEEEEECTTSHHHHTT-CCTTCEEEEETTB---CBCTT-T---GGGGTSCSCEEEEEEEEEEE
T ss_pred eEEEEEeCCCChHHHcC-CCCCCEEEEECCE---Eccch-h---HHHHhhCCCCEEEEEEEeCC
Confidence 48999999999999999 9999999999753 22211 1 23445554446788888764
No 389
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=95.26 E-value=0.015 Score=55.85 Aligned_cols=58 Identities=16% Similarity=0.304 Sum_probs=44.2
Q ss_pred CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-c-cCceEEEEeecC
Q 023871 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPLLMKMQKRY 169 (276)
Q Consensus 105 Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-r-~gpv~L~l~R~~ 169 (276)
.|++|..|.|++.|+++| |++||+|+.+-.. +..++.....+|.. + ...+.|++.|.-
T Consensus 282 ~G~~V~~V~~~spA~~aG-L~~GDvI~~vnG~------~v~~~~~l~~~l~~~~~g~~v~l~V~R~g 341 (451)
T 3pv2_A 282 QGALVSQVNPNSPAELAG-LKAGDIITQINDT------KITQATQVKTTISLLRVGSTVKIIVERDN 341 (451)
T ss_dssp CCEEEEEECTTSHHHHHT-CCTTCEEEEETTE------ECCSHHHHHHHHHTSCTTCEEEEEEEETT
T ss_pred ceEEEEecCCCChHHHcC-CCCCCEEEEECCE------EcCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 689999999999999999 9999999997643 33344555555553 2 356899998853
No 390
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=95.17 E-value=0.041 Score=51.13 Aligned_cols=70 Identities=9% Similarity=-0.026 Sum_probs=44.4
Q ss_pred HHHhhHHHHHHH-HHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHc-CCCChhhHHHHHHHHhHHHHhcC
Q 023871 203 QNYMKKKEQKER-REQDLREGLQLYR-------TGKYE-------VAREKFESVLG-SKPTPEESSVASYNVACCYSKLN 266 (276)
Q Consensus 203 ~nYkk~Kelkkq-ae~~~~eGnaLfk-------~grYe-------EAI~~Ye~AL~-i~P~~~e~a~A~YN~AcCyaKLg 266 (276)
..|.++-++... .+-|+.-|.-+.+ .|+++ +|+..|++|+. ++|++. .+|++.+..+.++|
T Consensus 259 ~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~---~l~~~~~~~~~~~g 335 (530)
T 2ooe_A 259 FAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM---LLYFAYADYEESRM 335 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH---HHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHhcC
Confidence 345555555443 2446666666654 57766 77777777775 677664 46777777777777
Q ss_pred ChhHHHhhh
Q 023871 267 QVPLLLALI 275 (276)
Q Consensus 267 q~~eAI~aL 275 (276)
++++|++.+
T Consensus 336 ~~~~A~~~~ 344 (530)
T 2ooe_A 336 KYEKVHSIY 344 (530)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 777776554
No 391
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=95.02 E-value=0.004 Score=56.82 Aligned_cols=57 Identities=18% Similarity=0.324 Sum_probs=0.0
Q ss_pred CCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeec
Q 023871 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR 168 (276)
Q Consensus 104 dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~ 168 (276)
..|++|.+|.+++.|+++| |++||+|+++-.. .+ .++.....+++. ..++.|++.|.
T Consensus 253 ~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~---~v---~~~~~~~~~l~~-~~~v~l~v~R~ 309 (332)
T 3num_A 253 ISGAYIIEVIPDTPAEAGG-LKENDVIISINGQ---SV---VSANDVSDVIKR-ESTLNMVVRRG 309 (332)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCceEEEEeccCCChHHcC-CCCCCEEEEECCE---EC---CCHHHHHHHHhC-CCeEEEEEEEC
Confidence 3589999999999999999 9999999998643 33 233334444544 45688888884
No 392
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=94.95 E-value=0.031 Score=50.92 Aligned_cols=76 Identities=9% Similarity=-0.060 Sum_probs=55.9
Q ss_pred CcchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHH----HHc---CCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHH
Q 023871 192 VISNRVREIQMQNYMKKKEQKER-REQDLREGLQL----YRT---GKYEVAREKFESVLGSKPTPEESSVASYNVACCYS 263 (276)
Q Consensus 192 ~i~~al~Eiq~~nYkk~Kelkkq-ae~~~~eGnaL----fk~---grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCya 263 (276)
+++++|.-+ .++-++..+ ...|.-++..+ ... ++|+++|..++++|+.+|++. .+|+++.-|..
T Consensus 84 ~~~eeL~~~-----~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny---~aW~~R~~vl~ 155 (306)
T 3dra_A 84 NLYDELDWC-----EEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNH---HVWSYRKWLVD 155 (306)
T ss_dssp CHHHHHHHH-----HHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCH---HHHHHHHHHHH
T ss_pred cHHHHHHHH-----HHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHH
Confidence 555554433 333333333 24566777777 566 899999999999999999996 58999999999
Q ss_pred hcCChh--HHHhhh
Q 023871 264 KLNQVP--LLLALI 275 (276)
Q Consensus 264 KLgq~~--eAI~aL 275 (276)
+++.++ ++++..
T Consensus 156 ~l~~~~~~~EL~~~ 169 (306)
T 3dra_A 156 TFDLHNDAKELSFV 169 (306)
T ss_dssp HTTCTTCHHHHHHH
T ss_pred HhcccChHHHHHHH
Confidence 999998 877653
No 393
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.92 E-value=0.076 Score=44.76 Aligned_cols=57 Identities=12% Similarity=0.084 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHcCC-CChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 217 QDLREGLQLYRTG---KYEVAREKFESVLGSK-PTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 217 ~~~~eGnaLfk~g---rYeEAI~~Ye~AL~i~-P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
..++=|..|.+.+ +++++|..++..+..+ |+. ...++||+|-.|.++++++.|+..+
T Consensus 34 ~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~--~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 34 TQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEE--QRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH--HHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc--hHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3458899999988 8889999999999877 632 2468999999999999999998765
No 394
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=94.74 E-value=0.0053 Score=58.96 Aligned_cols=67 Identities=15% Similarity=0.366 Sum_probs=0.0
Q ss_pred ceeEEeee-CCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeec
Q 023871 95 YGLKFAKG-RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR 168 (276)
Q Consensus 95 LGl~f~e~-~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~ 168 (276)
+|+.+..- ...+++|.+|.+++.|+++| |++||+|+.+... .+ .++.....+|+...+++.|.+.|.
T Consensus 372 ~G~~l~~~~~~~gv~V~~V~~gspA~~aG-L~~GDiI~~vng~---~v---~~~~~l~~~l~~~~~~v~l~v~R~ 439 (448)
T 1ky9_A 372 EGAEMSNKGKDQGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQ---AV---KNIAELRKVLDSKPSVLALNIQRG 439 (448)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cceEeeccCCCCeEEEEEecCCCHHHHcC-CCCCCEEEEECCE---EC---CCHHHHHHHHHcCCCeEEEEEEEC
Confidence 36666432 34589999999999999999 9999999998642 33 334444556666667888888884
No 395
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=94.72 E-value=0.086 Score=41.09 Aligned_cols=55 Identities=5% Similarity=-0.099 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh----cCChhHHHhhh
Q 023871 216 EQDLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVPLLLALI 275 (276)
Q Consensus 216 e~~~~eGnaLfk----~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK----Lgq~~eAI~aL 275 (276)
..+++-|..++. .+++++|+.+|++|.+. .+ ..+++|++.+|.. .+++++|+..+
T Consensus 58 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~---~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 120 (138)
T 1klx_A 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--ND---QDGCLILGYKQYAGKGVVKNEKQAVKTF 120 (138)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CC---HHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence 445678888877 89999999999999976 23 3689999999999 99999998765
No 396
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.66 E-value=0.099 Score=58.03 Aligned_cols=82 Identities=18% Similarity=0.192 Sum_probs=58.7
Q ss_pred HHHHhhcCCCcchhHHHHHH---------------HHHhhHHHHHHH--------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 023871 183 IIRAERNSGVISNRVREIQM---------------QNYMKKKEQKER--------REQDLREGLQLYRTGKYEVAREKFE 239 (276)
Q Consensus 183 ~~~~~r~~G~i~~al~Eiq~---------------~nYkk~Kelkkq--------ae~~~~eGnaLfk~grYeEAI~~Ye 239 (276)
++.+=...|+++++++-.++ ..|-|-.++..- ..++..-|..+++.|+|++|+..|+
T Consensus 1140 Va~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~ 1219 (1630)
T 1xi4_A 1140 VVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYN 1219 (1630)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34445567788888777766 112221111110 1246788999999999999999999
Q ss_pred HHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 240 SVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 240 ~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+| .-|...+.||.++|++++||++-
T Consensus 1220 kA-----------~ny~rLA~tLvkLge~q~AIEaa 1244 (1630)
T 1xi4_A 1220 NV-----------SNFGRLASTLVHLGEYQAAVDGA 1244 (1630)
T ss_pred hh-----------hHHHHHHHHHHHhCCHHHHHHHH
Confidence 97 14899999999999999999863
No 397
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=94.46 E-value=0.062 Score=49.38 Aligned_cols=53 Identities=13% Similarity=0.003 Sum_probs=43.7
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh----cCChhHHHhhh
Q 023871 218 DLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVPLLLALI 275 (276)
Q Consensus 218 ~~~eGnaLfk----~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK----Lgq~~eAI~aL 275 (276)
++.-|..++. .+++++|+.+|++|++.. + ..+++|++.+|.+ .+++++|+..+
T Consensus 366 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 426 (490)
T 2xm6_A 366 QFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--L---SAAQVQLGEIYYYGLGVERDYVQAWAWF 426 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---HHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 4566777777 799999999999999754 2 3589999999999 89999998765
No 398
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=94.40 E-value=0.056 Score=52.74 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=34.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023871 203 QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESV 241 (276)
Q Consensus 203 ~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~A 241 (276)
..|..++..-.+...|..-|..|+++|+|++|++.|.+|
T Consensus 136 g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 136 KMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp -CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHc
Confidence 667777777778788899999999999999999999999
No 399
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=94.37 E-value=0.059 Score=50.59 Aligned_cols=101 Identities=8% Similarity=-0.122 Sum_probs=72.6
Q ss_pred cCCCcccccccchHH-HHHHhhcCCCcchhHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHcC-CHHHHHHHHHHHHcC
Q 023871 168 RYGKMEQTGELSEKE-IIRAERNSGVISNRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTG-KYEVAREKFESVLGS 244 (276)
Q Consensus 168 ~~~~~~~~~~~~e~~-~~~~~r~~G~i~~al~Eiq~~nYkk~Kelkkqa-e~~~~eGnaLfk~g-rYeEAI~~Ye~AL~i 244 (276)
+.-++....+..+.- .+|+-+..+..+.. ....+.++-++...- ..|..++..|...+ +|+++|..++++|..
T Consensus 43 ~~~~i~y~~~y~~~~~~~r~~~~~~e~se~----AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~ 118 (349)
T 3q7a_A 43 PVVPIMYSEEYKDAMDYFRAIAAKEEKSER----ALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ 118 (349)
T ss_dssp CSSCBCCCHHHHHHHHHHHHHHHTTCCSHH----HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CeeeeeeCHHHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 334444444444443 57887777777643 124455555555543 55888999998888 599999999999999
Q ss_pred CCChhhHHHHHHHHhHHHHhc-C-ChhHHHhhh
Q 023871 245 KPTPEESSVASYNVACCYSKL-N-QVPLLLALI 275 (276)
Q Consensus 245 ~P~~~e~a~A~YN~AcCyaKL-g-q~~eAI~aL 275 (276)
+|++. .+|+++..|..++ + +++++++.+
T Consensus 119 nPKny---~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 119 NLKSY---QVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp TCCCH---HHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred CCCcH---HHHHHHHHHHHHhcCCChHHHHHHH
Confidence 99996 6899999999998 7 788887654
No 400
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.08 E-value=0.065 Score=55.29 Aligned_cols=50 Identities=24% Similarity=0.194 Sum_probs=45.1
Q ss_pred HHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 224 QLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 224 aLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
=|-+.|+|+-|+.+-.+|..+.|.+- ..||+.|-||.++|+|+.|+-.|+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF---~tW~~La~vYi~l~d~e~ALLtLN 395 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSF---ESWYNLARCHIKKEEYEKALFAIN 395 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCH---HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhh---HHHHHHHHHHHHhccHHHHHHHHh
Confidence 34578999999999999999999995 699999999999999999997763
No 401
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=93.99 E-value=0.082 Score=49.08 Aligned_cols=56 Identities=11% Similarity=-0.117 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCC-hhHHHhhh
Q 023871 217 QDLREGLQLYRTG--KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ-VPLLLALI 275 (276)
Q Consensus 217 ~~~~eGnaLfk~g--rYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq-~~eAI~aL 275 (276)
.|.-++..+.+.+ +|+++++.++++|+++|.+. .||+++.-+..+++. ++++++..
T Consensus 110 aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy---~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 110 TWHHRCWLLSRLPEPNWARELELCARFLEADERNF---HCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhCcCHHHHHHHH
Confidence 3566777777887 49999999999999999986 589999999999998 57777653
No 402
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=93.92 E-value=0.099 Score=53.31 Aligned_cols=69 Identities=9% Similarity=0.097 Sum_probs=49.9
Q ss_pred cceeEEeeeCCCCeEEEEeCCC--------CCccccc-CcccCCEEEEeecccCCcceecccchhHHHHhhcccC-ceEE
Q 023871 94 PYGLKFAKGRDGGTYIDAIAPG--------GSADKTG-MFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG-PLLM 163 (276)
Q Consensus 94 PLGl~f~e~~dGgv~V~~v~~g--------gnA~k~G-~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~g-pv~L 163 (276)
-+|+.|.. .+|+++|..|.+| +.|+++| .|+ ||+|++|-.. .+ .+...+...|+...| +|.|
T Consensus 738 g~G~~~~~-~~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~---~~---~~~~~~~~~~~~~~g~~v~l 809 (1045)
T 1k32_A 738 RIACDFKL-DGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGE---TV---GAGSNIYRVLSEKAGTSARI 809 (1045)
T ss_dssp BCSEEEEE-ETTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTE---EC---BTTBCHHHHHHTTTTSEEEE
T ss_pred eecEEEEE-eCCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCE---Ec---cchhhHHHhhcCCCCCEEEE
Confidence 46788876 4689999999998 9999999 489 9999998753 22 222244556665544 6799
Q ss_pred EEeecCC
Q 023871 164 KMQKRYG 170 (276)
Q Consensus 164 ~l~R~~~ 170 (276)
++.|.-+
T Consensus 810 ~v~r~~~ 816 (1045)
T 1k32_A 810 RLSGKGG 816 (1045)
T ss_dssp EEECSSS
T ss_pred EEECCCC
Confidence 9988653
No 403
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=93.88 E-value=0.067 Score=49.66 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHcCCCChhhHHHHHHHHhHH-H--HhcCChhHHHhh
Q 023871 230 KYEVAREKFESVLGSKPTPEESSVASYNVACC-Y--SKLNQVPLLLAL 274 (276)
Q Consensus 230 rYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcC-y--aKLgq~~eAI~a 274 (276)
++++|+.+|++|. |.+. .+++|++.+ | ...+++++|+..
T Consensus 232 d~~~A~~~~~~aa---~g~~---~a~~~Lg~~~~~~~~~~d~~~A~~~ 273 (452)
T 3e4b_A 232 DEKTAQALLEKIA---PGYP---ASWVSLAQLLYDFPELGDVEQMMKY 273 (452)
T ss_dssp CHHHHHHHHHHHG---GGST---HHHHHHHHHHHHSGGGCCHHHHHHH
T ss_pred CHHHHHHHHHHHc---CCCH---HHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 4444444444444 3332 345555555 3 345555555544
No 404
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=93.72 E-value=0.024 Score=55.26 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.|..-|..+|..|+|++|+..|+++ + .|.++|-|+.++|++++|+++.
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a-----~------n~~~LA~~L~~Lg~yq~AVea~ 171 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV-----S------NFGRLASTLVHLGEYQAAVDGA 171 (449)
T ss_dssp -------------CTTTHHHHHHHT-----T------CHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-----h------hHHHHHHHHHHhccHHHHHHHH
Confidence 7889999999999999999999988 1 4889999999999999999874
No 405
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=93.33 E-value=0.15 Score=46.79 Aligned_cols=53 Identities=6% Similarity=-0.034 Sum_probs=35.0
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh----cCChhHHHhhh
Q 023871 218 DLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVPLLLALI 275 (276)
Q Consensus 218 ~~~eGnaLfk----~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK----Lgq~~eAI~aL 275 (276)
++.-|..+.. .++|++|+.+|++|++.. + ..+++|++.||.. .+++++|++.+
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--R---DSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---HHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--C---HHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 3455555555 667777777777776542 2 2467778887777 77777777654
No 406
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=93.01 E-value=0.11 Score=49.62 Aligned_cols=50 Identities=6% Similarity=-0.064 Sum_probs=43.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 223 LQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 223 naLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
+.++..|++++|+..+++||.++|+. .+|.-.+.+|...|++++|++.++
T Consensus 285 l~~l~~gd~d~A~~~l~rAl~Ln~s~----~a~~llG~~~~~~G~~~eA~e~~~ 334 (372)
T 3ly7_A 285 VSALVKGKTDESYQAINTGIDLEMSW----LNYVLLGKVYEMKGMNREAADAYL 334 (372)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34456799999999999999999864 467888999999999999998763
No 407
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=92.87 E-value=0.21 Score=46.14 Aligned_cols=43 Identities=9% Similarity=0.040 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 229 GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 229 grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
++|++|+..|+++++..|+.. ....++| ||.++|++++|-..|
T Consensus 192 ~~~q~A~~~f~El~~~~p~~~-~~~lLln---~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 192 ETATSNFYYYEELSQTFPTWK-TQLGLLN---LHLQQRNIAEAQGIV 234 (310)
T ss_dssp STTTHHHHHHHHHHTTSCSHH-HHHHHHH---HHHHHTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCcc-cHHHHHH---HHHHcCCHHHHHHHH
Confidence 499999999999999888721 1357888 999999999998876
No 408
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=92.61 E-value=0.079 Score=50.81 Aligned_cols=57 Identities=18% Similarity=0.373 Sum_probs=42.8
Q ss_pred CCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhc-c-cCceEEEEeec
Q 023871 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ-R-VGPLLMKMQKR 168 (276)
Q Consensus 105 Ggv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~-r-~gpv~L~l~R~ 168 (276)
.|++|.+|.+++.|+++| |++||+|+.+-.. .+ .++.....+|.. + ...+.|++.|.
T Consensus 286 ~G~~V~~V~~gspA~~AG-L~~GDvI~~inG~---~v---~~~~~l~~~l~~~~~g~~v~l~v~R~ 344 (448)
T 1ky9_A 286 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGK---PI---SSFAALRAQVGTMPVGSKLTLGLLRD 344 (448)
T ss_dssp CSEECCCCTTCSSSTTTT-CCTTCEECBSSSS---BC---CSSHHHHHHTTSSBTTCCCEEEEESS
T ss_pred CceEEEEeccCCHHHHcC-CCCCCEEEEECCE---Ec---CCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence 599999999999999999 9999999987642 33 334445555653 2 45678998884
No 409
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=92.60 E-value=0.18 Score=46.81 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=42.4
Q ss_pred HHHHHHHHHcCCHH-HHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCC----------hhHHHhhh
Q 023871 219 LREGLQLYRTGKYE-VAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ----------VPLLLALI 275 (276)
Q Consensus 219 ~~eGnaLfk~grYe-EAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq----------~~eAI~aL 275 (276)
.+.-.+.-+.|.|. +||..++++|.++|++. .+|+++..|...++. +++++..+
T Consensus 33 ~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~y---taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~ 97 (331)
T 3dss_A 33 TQAVFQKRQAGELDESVLELTSQILGANPDFA---TLWNCRREVLQHLETEKSPEESAALVKAELGFL 97 (331)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCH---HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCchhH---HHHHHHHHHHHHhcccccchhhhHHHHHHHHHH
Confidence 34444555677776 89999999999999996 689999999988876 56666543
No 410
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=92.12 E-value=0.027 Score=52.98 Aligned_cols=55 Identities=20% Similarity=0.407 Sum_probs=0.0
Q ss_pred EEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEee
Q 023871 108 YIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQK 167 (276)
Q Consensus 108 ~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R 167 (276)
+|..|.+||.|+++| +++||+|+.+... .|-. .....+..+|+...+.+.|++..
T Consensus 318 ~I~~V~~gs~A~~aG-L~~GD~Il~VNg~---~v~~-~s~~~~~~~l~~~~~~v~L~V~p 372 (388)
T 3suz_A 318 IICSLMRGGIAERGG-VRVGHRIIEINGQ---SVVA-TAHEKIVQALSNSVGEIHMKTMP 372 (388)
T ss_dssp ------------------------------------------------------------
T ss_pred EEEEeecCCHHHHcC-CCCCCEEEEECCE---ECCC-CCHHHHHHHHHhCCCeEEEEEEe
Confidence 899999999999999 9999999998753 2211 11234556667667777777643
No 411
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=91.86 E-value=0.11 Score=48.61 Aligned_cols=64 Identities=14% Similarity=-0.039 Sum_probs=51.4
Q ss_pred HHHhhHHHHHHH-HHHHHHHHHHHHHc-C-CHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChh
Q 023871 203 QNYMKKKEQKER-REQDLREGLQLYRT-G-KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVP 269 (276)
Q Consensus 203 ~nYkk~Kelkkq-ae~~~~eGnaLfk~-g-rYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~ 269 (276)
.++.++-+...+ ...|.-++..+.+. + +++++|+.++++|+.+|++. .||+++.-|..+++.++
T Consensus 110 ~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy---~AW~~R~wvl~~l~~~~ 176 (349)
T 3q7a_A 110 RLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNY---HTWAYLHWLYSHFSTLG 176 (349)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCH---HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcccc
Confidence 334444433333 35688899999887 8 99999999999999999996 69999999999999888
No 412
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=91.75 E-value=0.32 Score=48.32 Aligned_cols=39 Identities=21% Similarity=0.389 Sum_probs=31.6
Q ss_pred ceeEEeee------------CCCCeEEEEeCCCCCcccccCcccCCEEEEeec
Q 023871 95 YGLKFAKG------------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSA 135 (276)
Q Consensus 95 LGl~f~e~------------~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa 135 (276)
||+.+..- ...|++|.+|.|++.|++ + |++||+|+.+..
T Consensus 255 LGv~~~~~~~~~~~~~~~l~~~~Gv~V~~V~~~spA~~-a-l~~GDvI~~idg 305 (539)
T 4fln_A 255 LGVLLQKLENPALRECLKVPTNEGVLVRRVEPTSDASK-V-LKEGDVIVSFDD 305 (539)
T ss_dssp CCEEEEECCCHHHHHHHTCSSSBCEEEEEECTTSGGGG-T-CCTTCEEEEETT
T ss_pred cceEEEecCCHHHHHhcCCCCcCceeeecccCCChHHh-C-ccCCCEEEEECC
Confidence 68877553 235999999999999986 4 999999999764
No 413
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=91.58 E-value=0.28 Score=45.40 Aligned_cols=54 Identities=7% Similarity=-0.105 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCC--ChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLGSKP--TPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P--~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+--|..++..|+|++|+.++++.|+..| ++ ..++.-.+-||+++|+.+.|.+.|
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~---lea~~l~vqi~L~~~r~d~A~k~l 159 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGT---TELLLLAIEVALLNNNVSTASTIF 159 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTH---HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCc---HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4667777889999999999999999887 44 357888999999999999998866
No 414
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=90.97 E-value=0.58 Score=36.28 Aligned_cols=50 Identities=4% Similarity=-0.125 Sum_probs=41.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh----cCChhHHHhhh
Q 023871 221 EGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVPLLLALI 275 (276)
Q Consensus 221 eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK----Lgq~~eAI~aL 275 (276)
-|.-++..+.+++|+.+|++|.+. .+ ..++||++.||.. .+++++|+..+
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~---~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NS---GNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TC---HHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CC---HHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 555556678899999999999986 33 3689999999999 89999998765
No 415
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=90.65 E-value=0.38 Score=44.54 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh----cCChhHHHhhh
Q 023871 230 KYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVPLLLALI 275 (276)
Q Consensus 230 rYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK----Lgq~~eAI~aL 275 (276)
++++|+.+|++|+ |.+. .++||++.||.. ..++++|+..+
T Consensus 302 d~~~A~~~~~~Aa---~g~~---~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 345 (452)
T 3e4b_A 302 DAKAAEAHFEKAV---GREV---AADYYLGQIYRRGYLGKVYPQKALDHL 345 (452)
T ss_dssp CHHHHHHHHHTTT---TTCH---HHHHHHHHHHHTTTTSSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHh---CCCH---HHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence 7777777777776 4443 467777777666 33666665543
No 416
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.51 E-value=0.5 Score=38.68 Aligned_cols=38 Identities=21% Similarity=0.344 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH
Q 023871 214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES 251 (276)
Q Consensus 214 qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~ 251 (276)
+++-.+--|...|++|+|++|+...+..|+++|++...
T Consensus 73 ~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 73 QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 44446788889999999999999999999999988643
No 417
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=89.79 E-value=1.4 Score=33.42 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023871 211 QKERREQDLREGLQLYRTGKYEVAREKFESVLG 243 (276)
Q Consensus 211 lkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~ 243 (276)
+..++-+.+.+|.+.-+.|+|++|+..|..||+
T Consensus 15 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 15 LEEMARKYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444556777888999999999999998884
No 418
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=89.26 E-value=1.2 Score=35.45 Aligned_cols=52 Identities=27% Similarity=0.394 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHh
Q 023871 213 ERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK 264 (276)
Q Consensus 213 kqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaK 264 (276)
++++..+.+|-.+|+.++|.+|+..|++++.+--|....-.+.+...-|--|
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~~i~ki~~fyl~ec~kk 102 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLSDNEEIKKIASFYLEECRKK 102 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccccCHHHHHHHHHHHHHHHHH
Confidence 3455678999999999999999999999994433332222333445555443
No 419
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=89.03 E-value=1.4 Score=33.15 Aligned_cols=30 Identities=13% Similarity=0.097 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023871 214 RREQDLREGLQLYRTGKYEVAREKFESVLG 243 (276)
Q Consensus 214 qae~~~~eGnaLfk~grYeEAI~~Ye~AL~ 243 (276)
++-+.+.+|.+.-+.|+|++|+..|..||+
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444556778899999999999999998884
No 420
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=86.43 E-value=3.3 Score=31.07 Aligned_cols=35 Identities=17% Similarity=0.405 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhh
Q 023871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE 250 (276)
Q Consensus 216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e 250 (276)
-+-+..|..|...|++++|+..|-+||.++|+..+
T Consensus 18 l~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 18 LEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 34468999999999999999999999999999754
No 421
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.00 E-value=1.6 Score=36.23 Aligned_cols=38 Identities=18% Similarity=0.353 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH
Q 023871 214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES 251 (276)
Q Consensus 214 qae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~ 251 (276)
+++-++--|...|++|+|++|+..-+..|+++|++...
T Consensus 77 ~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 77 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 34446788889999999999999999999999998654
No 422
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=84.53 E-value=1.5 Score=33.36 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023871 215 REQDLREGLQLYRTGKYEVAREKFESVLG 243 (276)
Q Consensus 215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~ 243 (276)
+-+.+.+|.++-+.|+|++|+..|..|++
T Consensus 16 A~~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 16 AATVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455777888899999999999999884
No 423
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.59 E-value=3.2 Score=34.85 Aligned_cols=36 Identities=14% Similarity=0.286 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH
Q 023871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES 251 (276)
Q Consensus 216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~ 251 (276)
+-.+--|...|++|+|++|...-+..|+++|++...
T Consensus 78 dcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 78 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 335677888888899999988888888888888644
No 424
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=83.32 E-value=4.3 Score=32.54 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023871 215 REQDLREGLQLYRTGKYEVAREKFESVLG 243 (276)
Q Consensus 215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~ 243 (276)
+...+.+|..+-+.|+|++||..|..|++
T Consensus 18 Ai~lv~~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 18 AIDLASKAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33445566777788999999999998875
No 425
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=80.98 E-value=0.89 Score=43.29 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=27.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCChh
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPE 249 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~ 249 (276)
.-.|..+.-.|++++|++.|++|+.++|..+
T Consensus 314 ~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 314 VLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 4667777789999999999999999999986
No 426
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=80.78 E-value=4.8 Score=37.19 Aligned_cols=84 Identities=11% Similarity=0.023 Sum_probs=60.5
Q ss_pred cCCCcchhHHHHHH-------HH----------HhhHHHHHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcCCCChhh
Q 023871 189 NSGVISNRVREIQM-------QN----------YMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEE 250 (276)
Q Consensus 189 ~~G~i~~al~Eiq~-------~n----------Ykk~Kelkkqae~~~-~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e 250 (276)
..|+.+.++..+++ ++ -...-.+...+..+. ..+..+...|+|++|+...++++..+|-++
T Consensus 127 ~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E- 205 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYRE- 205 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-
T ss_pred hCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-
Confidence 46777777776666 10 011233334443333 344455789999999999999999999886
Q ss_pred HHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 251 SSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 251 ~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.+|.-.-.||...|+..+|++.+
T Consensus 206 --~~~~~lm~al~~~Gr~~~Al~~y 228 (388)
T 2ff4_A 206 --PLWTQLITAYYLSDRQSDALGAY 228 (388)
T ss_dssp --HHHHHHHHHHHTTTCHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHH
Confidence 48899999999999999999764
No 427
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=80.64 E-value=2.5 Score=32.36 Aligned_cols=30 Identities=13% Similarity=0.209 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023871 214 RREQDLREGLQLYRTGKYEVAREKFESVLG 243 (276)
Q Consensus 214 qae~~~~eGnaLfk~grYeEAI~~Ye~AL~ 243 (276)
++-+.+.+|.++-+.|+|++|+..|..|++
T Consensus 14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334455777888889999999999888874
No 428
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=80.33 E-value=3.8 Score=38.17 Aligned_cols=71 Identities=10% Similarity=-0.084 Sum_probs=50.4
Q ss_pred HHHhhHHHHHHHHHH--HH-HHHHHHHHc-----CCHHHHHHHHHHHHcCCCCh-hhHHHHHHHHhHHHHhc-CChhHHH
Q 023871 203 QNYMKKKEQKERREQ--DL-REGLQLYRT-----GKYEVAREKFESVLGSKPTP-EESSVASYNVACCYSKL-NQVPLLL 272 (276)
Q Consensus 203 ~nYkk~Kelkkqae~--~~-~eGnaLfk~-----grYeEAI~~Ye~AL~i~P~~-~e~a~A~YN~AcCyaKL-gq~~eAI 272 (276)
....|+.++.....+ ++ --|.-.++. |+.+.|...|++||+++|+. . ..+|.-|--++.. ++.++|.
T Consensus 184 a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~i---d~~v~YA~~l~~~~gd~~~a~ 260 (301)
T 3u64_A 184 MMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDP---DHHITYADALCIPLNNRAGFD 260 (301)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCS---HHHHHHHHHTTTTTTCHHHHH
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCc---hHHHHHHHHHHHhcCCHHHHH
Confidence 556677777776533 22 233323442 99999999999999999975 4 4677777778774 8888888
Q ss_pred hhhC
Q 023871 273 ALIE 276 (276)
Q Consensus 273 ~aLE 276 (276)
..|+
T Consensus 261 ~~L~ 264 (301)
T 3u64_A 261 EALD 264 (301)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 429
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=79.85 E-value=2.1 Score=35.01 Aligned_cols=56 Identities=16% Similarity=0.103 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCCHHH---HHHHHHHHHcCC-CChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 218 DLREGLQLYRTGKYEV---AREKFESVLGSK-PTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 218 ~~~eGnaLfk~grYeE---AI~~Ye~AL~i~-P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
-++=|..|-+...-.+ +|...+..+..+ |. ....+.|++|-.|.|+|+++.|+..+
T Consensus 38 ~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~--~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 38 QFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH--HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3577777777766655 999999999765 42 22578999999999999999998764
No 430
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=79.37 E-value=3.1 Score=30.96 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 023871 216 EQDLREGLQLYRTGKYEVAREKFESVLGS 244 (276)
Q Consensus 216 e~~~~eGnaLfk~grYeEAI~~Ye~AL~i 244 (276)
...+.+|...-+.|+|++||..|..|++.
T Consensus 14 ~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 14 IELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34456677888899999999999998853
No 431
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=78.11 E-value=1.4 Score=36.60 Aligned_cols=54 Identities=7% Similarity=0.102 Sum_probs=41.4
Q ss_pred HHHHHHHHc---CCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 220 REGLQLYRT---GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 220 ~eGnaLfk~---grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+=|-.|-+. .+..++|...+..+...|.. ....+|.+|-.|.|+|+++.|...+
T Consensus 45 ~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~--~Rd~LYyLAvg~yklgdY~~Ar~y~ 101 (134)
T 3o48_A 45 NYAWGLIKSTDVNDERLGVKILTDIYKEAESR--RRECLYYLTIGCYKLGEYSMAKRYV 101 (134)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG--HHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch--hHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 444555443 35668999999998777644 2578999999999999999998764
No 432
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=76.92 E-value=9 Score=32.48 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh--h-hH--HHHH-HHHhHHHHhcCChhHHHhhh
Q 023871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTP--E-ES--SVAS-YNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~--~-e~--a~A~-YN~AcCyaKLgq~~eAI~aL 275 (276)
..+.+..|..||+.|+|=+|-+.+|.+-...|.. . .. ..++ .-.|+-|.+.||+.-|...|
T Consensus 32 ~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll 98 (161)
T 2ijq_A 32 LRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLF 98 (161)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3456799999999999999999999999665443 2 22 4446 66788888889998887665
No 433
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=76.23 E-value=2.8 Score=35.26 Aligned_cols=55 Identities=7% Similarity=0.116 Sum_probs=42.1
Q ss_pred HHHHHHHHHc---CCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 219 LREGLQLYRT---GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 219 ~~eGnaLfk~---grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
|+=+-.|.+. .+-.++|..++..+...|+.. ..+.|.+|-.|.|+|++++|...+
T Consensus 43 F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~--RdcLYyLAvg~ykl~~Y~~Ar~y~ 100 (144)
T 1y8m_A 43 FNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR--RECLYYLTIGCYKLGEYSMAKRYV 100 (144)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTH--HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccch--hHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3555556554 345578888999888777643 568999999999999999998764
No 434
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=71.10 E-value=7.3 Score=30.58 Aligned_cols=33 Identities=18% Similarity=0.441 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh
Q 023871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPE 249 (276)
Q Consensus 217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~ 249 (276)
+-+..|..|...|++++|+..|-+||.++|+..
T Consensus 22 ~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~ 54 (95)
T 1om2_A 22 EEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 54 (95)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 335889999999999999999999999999964
No 435
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=70.01 E-value=5 Score=38.27 Aligned_cols=61 Identities=15% Similarity=0.108 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--------CCChhh----H-----HHHHHHHhH-HHHhcCChhHHHhhh
Q 023871 215 REQDLREGLQLYRTGKYEVAREKFESVLGS--------KPTPEE----S-----SVASYNVAC-CYSKLNQVPLLLALI 275 (276)
Q Consensus 215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i--------~P~~~e----~-----a~A~YN~Ac-CyaKLgq~~eAI~aL 275 (276)
...|.+-|..+-+.++++.|+.+|.++=.. ...+.+ . ..-.+|.|- ||.++|++++|++.+
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHH
Confidence 345778888888999999999999986211 112111 0 112455555 788888888888764
No 436
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=69.20 E-value=4.3 Score=32.20 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 023871 220 REGLQLYRTGKYEVAREKFESVL 242 (276)
Q Consensus 220 ~eGnaLfk~grYeEAI~~Ye~AL 242 (276)
+++..+.+.|+|+|||++..+|.
T Consensus 20 RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCHHHHHHHHHHHH
Confidence 56788899999999999988876
No 437
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=69.02 E-value=7.8 Score=37.06 Aligned_cols=47 Identities=11% Similarity=0.053 Sum_probs=36.6
Q ss_pred HHHcCCHHHHHHHHHHHH--cCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 225 LYRTGKYEVAREKFESVL--GSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 225 Lfk~grYeEAI~~Ye~AL--~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
+.+.|++++|+..|++.. .+.|+.. .|.-+-.+|++.|++++|.+.|
T Consensus 150 ~~~~g~~~~A~~l~~~M~~~G~~Pd~~----ty~~Li~~~~~~g~~d~A~~ll 198 (501)
T 4g26_A 150 FCRKGDADKAYEVDAHMVESEVVPEEP----ELAALLKVSMDTKNADKVYKTL 198 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCCCHH----HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHhhCCCHHHHHHHH
Confidence 367888899998888887 5677773 4555667888899999988776
No 438
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=62.90 E-value=13 Score=28.58 Aligned_cols=50 Identities=24% Similarity=0.258 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhH---HHHHHHHhHHHHhcCCh
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEES---SVASYNVACCYSKLNQV 268 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~---a~A~YN~AcCyaKLgq~ 268 (276)
+..|..+|+.|+|=+|-+.+|.+-...|.+... -.++.-.|+-|.+.|++
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~ 57 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP 57 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH
Confidence 578999999999999999999999666654221 34455566667677776
No 439
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=60.97 E-value=6.3 Score=30.44 Aligned_cols=57 Identities=11% Similarity=0.088 Sum_probs=45.2
Q ss_pred HHhhcCCCcchhHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023871 185 RAERNSGVISNRVREIQM-QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESV 241 (276)
Q Consensus 185 ~~~r~~G~i~~al~Eiq~-~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~A 241 (276)
|.+|-...++++|+++.- +.+...++....++.-+++|...++.|++..|+.++.=|
T Consensus 8 ki~kYi~~leeaL~~i~~~~l~~~a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa 65 (87)
T 2pmr_A 8 RIEKDLELLEKNLMEMKSIKLSDDEEAVVERALNYRDDSVYYLEKGDHITSFGCITYA 65 (87)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555667777777764 457788899999988999999999999999999987533
No 440
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=59.11 E-value=11 Score=33.55 Aligned_cols=49 Identities=20% Similarity=0.329 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
--+..||-.|.|..|+-...+ -|- ..+.|..+.||-++.+++.|+.+||
T Consensus 38 L~~I~LyyngEY~R~Lf~L~~-----lNT---~Ts~YYk~LCy~klKdYkkA~~~le 86 (242)
T 3kae_A 38 LMSIVLYLNGEYTRALFHLHK-----LNT---CTSKYYESLCYKKKKDYKKAIKSLE 86 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT-----CCB---HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhhhhhhcchHhHHHHHHHh-----cch---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888887777654322 111 3578999999999999999999885
No 441
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=58.54 E-value=7.7 Score=39.04 Aligned_cols=70 Identities=11% Similarity=0.050 Sum_probs=55.1
Q ss_pred HHHhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHH-HHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 203 QNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAR-EKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 203 ~nYkk~Kelkkqa-e~~~~eGnaLfk~grYeEAI-~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
..|.++-.....- +-|+.-+.-+...|+.++|+ ..|++|+..+|+.. .+|...|..+-+.|+++.|-+.+
T Consensus 330 ~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~---~Lwl~~a~~ee~~~~~e~aR~iy 401 (679)
T 4e6h_A 330 YVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSA---VLAFSLSEQYELNTKIPEIETTI 401 (679)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhCCHHHHHHHH
Confidence 4566666655543 34777777777789999998 99999999999874 57889999999999998887654
No 442
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.48 E-value=5.7 Score=37.23 Aligned_cols=54 Identities=11% Similarity=-0.013 Sum_probs=32.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHh
Q 023871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLA 273 (276)
Q Consensus 220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~ 273 (276)
..|.-+++.|+|++|+..|.++..-+....+....+.++..++...++|..+..
T Consensus 136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~ 189 (429)
T 4b4t_R 136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE 189 (429)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 455555666777777777777665554444444455555566666666665544
No 443
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=58.19 E-value=4.5 Score=37.66 Aligned_cols=54 Identities=9% Similarity=0.089 Sum_probs=42.6
Q ss_pred CCCcchhHHHHHHHHHhhHHHHHHH--HHHHHHHHHHHHH-cCCHHHHHHHHHHHHcCCCCh
Q 023871 190 SGVISNRVREIQMQNYMKKKEQKER--REQDLREGLQLYR-TGKYEVAREKFESVLGSKPTP 248 (276)
Q Consensus 190 ~G~i~~al~Eiq~~nYkk~Kelkkq--ae~~~~eGnaLfk-~grYeEAI~~Ye~AL~i~P~~ 248 (276)
.|+.+++ +++|+|+.++... ..-.+.-|.-+.. .|+|++|...+++||..+|..
T Consensus 217 gGd~ekA-----~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 217 GGGMEKA-----HTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp TCCHHHH-----HHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred CCCHHHH-----HHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 4666666 6778888888873 4555677777766 599999999999999999884
No 444
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=57.18 E-value=32 Score=29.34 Aligned_cols=57 Identities=9% Similarity=-0.099 Sum_probs=45.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcC---CCCh--h-hHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLGS---KPTP--E-ESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~i---~P~~--~-e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
++..-.|+..|.|+.|+..++.++.+ +|+. + ..+.++++.|-.+...+++..|...+
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y 86 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKY 86 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 56777889999999999999998854 3442 2 23678889999999999999988654
No 445
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=56.65 E-value=16 Score=34.83 Aligned_cols=48 Identities=8% Similarity=0.025 Sum_probs=38.3
Q ss_pred HHHHcCCHHHHHHHHHHHH--cCCCChhhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 224 QLYRTGKYEVAREKFESVL--GSKPTPEESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 224 aLfk~grYeEAI~~Ye~AL--~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.+.+.|++++|+..|++.. .+.|+.. .|.-+=.+|++.|++++|.+.+
T Consensus 114 ~~~~~g~~~~A~~l~~~M~~~g~~Pd~~----tyn~lI~~~~~~g~~~~A~~l~ 163 (501)
T 4g26_A 114 LAVAKDDPEMAFDMVKQMKAFGIQPRLR----SYGPALFGFCRKGDADKAYEVD 163 (501)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTTCCCCHH----HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCccc----eehHHHHHHHHCCCHHHHHHHH
Confidence 3468899999999999987 5778873 4444556788999999998765
No 446
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.75 E-value=24 Score=28.60 Aligned_cols=43 Identities=14% Similarity=0.137 Sum_probs=27.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-------HHcCCCC
Q 023871 205 YMKKKEQKERREQDLREGLQLYRTGKYEVAREKFES-------VLGSKPT 247 (276)
Q Consensus 205 Ykk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~-------AL~i~P~ 247 (276)
|+..|.-.+++=+.+++|+++-+.|+-+.|+.+|.+ +|.+..+
T Consensus 12 l~~ik~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~ 61 (116)
T 2dl1_A 12 IKIIREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSK 61 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 455555555555666777777777777777666654 5566654
No 447
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=54.37 E-value=8.1 Score=38.88 Aligned_cols=52 Identities=15% Similarity=0.006 Sum_probs=30.7
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871 220 REGLQLYRT-GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 220 ~eGnaLfk~-grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a 274 (276)
.-+.--++. ++++.|...|+++|+..|++..+ |-.-+-....+|+.+.|-..
T Consensus 474 ~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~---w~~y~~fe~~~~~~~~AR~l 526 (679)
T 4e6h_A 474 ENAYIEYHISKDTKTACKVLELGLKYFATDGEY---INKYLDFLIYVNEESQVKSL 526 (679)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHH---HHHHHHHHHhCCCHHHHHHH
Confidence 333333555 45899999999999888887643 22222233445666555443
No 448
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=54.05 E-value=18 Score=38.11 Aligned_cols=87 Identities=14% Similarity=-0.044 Sum_probs=60.0
Q ss_pred cCCCcchhHHHHHHHH---------HhhHHHHHHHHH---------HHHHHHHHHHH-cCCHHHHHHHHHHHHcCC-CCh
Q 023871 189 NSGVISNRVREIQMQN---------YMKKKEQKERRE---------QDLREGLQLYR-TGKYEVAREKFESVLGSK-PTP 248 (276)
Q Consensus 189 ~~G~i~~al~Eiq~~n---------Ykk~Kelkkqae---------~~~~eGnaLfk-~grYeEAI~~Ye~AL~i~-P~~ 248 (276)
..|++++|...|+... ....+.+..-.. .-|.....||+ .+.|+.++..-..||+.. +++
T Consensus 854 ~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~ 933 (1139)
T 4fhn_B 854 KSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDD 933 (1139)
T ss_dssp HTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCC
T ss_pred hcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCC
Confidence 7888888888888721 111111111110 12456667754 699999999999999654 444
Q ss_pred hhH-HHHHHHHhHHHHhcCChhHHHhhh
Q 023871 249 EES-SVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 249 ~e~-a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
.+. ...|.|+=.+++.++++++|-.+|
T Consensus 934 ~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 934 EDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred hhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 443 557999999999999999998876
No 449
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=51.62 E-value=19 Score=35.70 Aligned_cols=58 Identities=7% Similarity=-0.048 Sum_probs=40.5
Q ss_pred CeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecccchhHHHHhhcccCceEEEEeecCCC
Q 023871 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGK 171 (276)
Q Consensus 106 gv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~~~g~~~~air~r~gpv~L~l~R~~~~ 171 (276)
+|.|..|.|++-|+..| +..||+|+.+-.. ++..+.....+|+. +..=+|+|+...+.
T Consensus 416 gVvvs~V~~~s~a~~~g-~~~gdiI~~vNg~------~V~s~~~l~~~l~~-~k~~~l~~~~~~~~ 473 (539)
T 4fln_A 416 IVILSQVLANEVNIGYE-DMNNQQVLKFNGI------PIRNIHHLAHLIDM-CKDKYLVFEFEDNY 473 (539)
T ss_dssp CEEEEEECCCGGGTTCS-SCCSEEEEEETTE------ECCSHHHHHHHHHT-CCSSEEEEEETTSC
T ss_pred EEEEEEecCCchhhhcC-CCCCCEEEeECCE------EcCCHHHHHHHHHH-cCCCeEEEEECCCE
Confidence 89999999999999998 8899999998743 44555555556663 22234455544443
No 450
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=49.45 E-value=12 Score=29.54 Aligned_cols=52 Identities=25% Similarity=0.246 Sum_probs=35.6
Q ss_pred ceEEEEecCcce--eEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecc
Q 023871 85 EEYEVEIEQPYG--LKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA 145 (276)
Q Consensus 85 ~~y~V~l~KPLG--l~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~ 145 (276)
.+....+.+.|| +.--+-.||..+...|... --+.=-|..||+|+- ++||.+
T Consensus 20 ~e~~g~V~~~lgn~~~~V~l~nG~~~la~i~GK--mRk~IwI~~GD~VlV-------e~~~yd 73 (102)
T 1jt8_A 20 NEILGIIEQMLGASRVRVRCLDGKTRLGRIPGR--LKNRIWVREGDVVIV-------KPWEVQ 73 (102)
T ss_dssp CCEEEEEECSSCSSEEEEEEETTEEEEEECCHH--HHHHHCCCSCEEEEE-------CCBCCT
T ss_pred CEEEEEEEEEcCCCEEEEEECCCCEEEEEEccc--ceeeEEecCCCEEEE-------EeccCC
Confidence 667888888888 3333446887777777622 233335889999987 677766
No 451
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.57 E-value=28 Score=27.73 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=36.9
Q ss_pred ceEEEEecCcce--eEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecc
Q 023871 85 EEYEVEIEQPYG--LKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA 145 (276)
Q Consensus 85 ~~y~V~l~KPLG--l~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~ 145 (276)
++....+.++|| +.--+..||..+...|...=. +.=-|..||+|+. ++||.+
T Consensus 15 ge~~g~V~~~lgn~~f~V~l~nG~~~la~i~GK~R--k~IwI~~GD~VlV-------e~~~yd 68 (111)
T 2dgy_A 15 QQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYR--KNIWIKRGDFLIV-------DPIEEG 68 (111)
T ss_dssp SCEEEEEEECCSSSEEEEECTTSCEEEEECCTTCC--SCCCCCSSCEEEE-------EECSSC
T ss_pred CeEEEEEEEeCCCCEEEEEeCCCCEEEEEechhhc--ccEEEcCCCEEEE-------EecccC
Confidence 457777888887 444455789888888875433 4456899999987 567655
No 452
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=45.06 E-value=90 Score=29.38 Aligned_cols=43 Identities=12% Similarity=-0.062 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhhhC
Q 023871 231 YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLALIE 276 (276)
Q Consensus 231 YeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~aLE 276 (276)
.+.+...|+++|...|.++ .+|++-|..+...|+.+.|.+.+|
T Consensus 195 ~~Rv~~~ye~al~~~p~~~---~lW~~ya~~~~~~~~~~~ar~i~e 237 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAE---EVYFFYSEYLIGIGQKEKAKKVVE 237 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCH---HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3456788999998888875 578888888888888888876653
No 453
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=44.85 E-value=17 Score=27.39 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=21.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHc
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLG 243 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~ 243 (276)
...|-+..-.|+|+.|+..|+.|++
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3566777788999999999999994
No 454
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=44.61 E-value=25 Score=27.30 Aligned_cols=39 Identities=13% Similarity=0.125 Sum_probs=30.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHH
Q 023871 204 NYMKKKEQKERREQDLREGLQLYRT---GKYEVAREKFESVL 242 (276)
Q Consensus 204 nYkk~Kelkkqae~~~~eGnaLfk~---grYeEAI~~Ye~AL 242 (276)
++.+.|.-.+++=..++.|++.-.. |+-++|+.+|.+.+
T Consensus 5 ~~~~ik~~h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi 46 (89)
T 3eab_A 5 EAERVRVFHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGI 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHH
Confidence 4566777777877888999999777 88888888887765
No 455
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=43.78 E-value=4.9 Score=36.64 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023871 217 QDLREGLQLYRTGKYEVAREKFESVLG 243 (276)
Q Consensus 217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~ 243 (276)
+.+.+|.++-+.|+|++|+.+|..|++
T Consensus 25 ~lv~~AVe~D~~g~y~eAl~lY~eaIe 51 (257)
T 2ymb_A 25 TVLKRAVELDSESRYPQALVCYQEGID 51 (257)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345667888889999999999999884
No 456
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=43.50 E-value=42 Score=36.47 Aligned_cols=48 Identities=15% Similarity=0.098 Sum_probs=35.7
Q ss_pred HHHHcCCHHHHHHHHHHHH--cCCCChhhHHHHHHHHhHHHHhcCCh-hHHHhhh
Q 023871 224 QLYRTGKYEVAREKFESVL--GSKPTPEESSVASYNVACCYSKLNQV-PLLLALI 275 (276)
Q Consensus 224 aLfk~grYeEAI~~Ye~AL--~i~P~~~e~a~A~YN~AcCyaKLgq~-~eAI~aL 275 (276)
.+.+.|+.++|+..|++.. .+.||.--| --+=.|+.+.|+. ++|.+.|
T Consensus 174 Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY----ntLI~glcK~G~~~e~A~~Ll 224 (1134)
T 3spa_A 174 GWARQGAFKELVYVLFMVKDAGLTPDLLSY----AAALQCMGRQDQDAGTIERCL 224 (1134)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTTCCCCHHHH----HHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCcHHHH----HHHHHHHHhCCCcHHHHHHHH
Confidence 4578999999999999998 778988433 2233378888885 6676654
No 457
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=43.26 E-value=26 Score=32.87 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=23.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHc
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLG 243 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~ 243 (276)
++.|.+++..|+++||+..|..+|-
T Consensus 118 Lk~gyk~~t~gKf~eAl~~Fr~iL~ 142 (325)
T 3mv2_A 118 MNEGYKNFKLNKPDIAIECFREAIY 142 (325)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4789999999999999999999993
No 458
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=42.14 E-value=28 Score=32.56 Aligned_cols=25 Identities=48% Similarity=0.553 Sum_probs=23.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHc
Q 023871 219 LREGLQLYRTGKYEVAREKFESVLG 243 (276)
Q Consensus 219 ~~eGnaLfk~grYeEAI~~Ye~AL~ 243 (276)
++.|.+++..|+++||+..|..+|-
T Consensus 106 Lk~gyk~~t~gKf~eAl~~Fr~iL~ 130 (320)
T 3mkr_B 106 LQLCYQLTTVGKFEEAVEKFRSILL 130 (320)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4889999999999999999999993
No 459
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=38.71 E-value=72 Score=27.22 Aligned_cols=69 Identities=7% Similarity=0.049 Sum_probs=47.7
Q ss_pred CCcchhHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCCh
Q 023871 191 GVISNRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV 268 (276)
Q Consensus 191 G~i~~al~Eiq~~nYkk~Kelkkqa-e~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~ 268 (276)
+|++.+ .+.|+.+..+.++- .-|+.-|.=--..|+...|.....+||.++|.+.+ ..+.|.+..+.|+.
T Consensus 74 ~D~d~a-----R~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~----~le~a~~nl~~~~~ 143 (161)
T 4h7y_A 74 QEPDDA-----RDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE----MLEIALRNLNLQKK 143 (161)
T ss_dssp HCGGGC-----HHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH----HHHHHHHHHHTTCS
T ss_pred cCHHHH-----HHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH----HHHHHHHhhhcCCC
Confidence 455555 46777776665553 33444444334689999999999999999999854 56677777777654
No 460
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Probab=38.27 E-value=14 Score=30.27 Aligned_cols=26 Identities=19% Similarity=0.438 Sum_probs=20.1
Q ss_pred CCeEEEEeCCCCCcccccCcccCCEEEE
Q 023871 105 GGTYIDAIAPGGSADKTGMFQVGDKVLA 132 (276)
Q Consensus 105 Ggv~V~~v~~ggnA~k~G~i~vGD~l~~ 132 (276)
.--||-|+.. |-+++.| |++||+|..
T Consensus 101 ~a~~VLEl~a-G~~~~~g-i~~Gd~v~~ 126 (136)
T 3pjy_A 101 PVAYVLELNA-GTVKRLG-VSPGDRLEG 126 (136)
T ss_dssp CEEEEEEEET-THHHHHT-CCTTCEEEE
T ss_pred ceeEEEEeCc-ChHHhcC-CCCCCEEEE
Confidence 3678888865 4567778 999999974
No 461
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=34.19 E-value=8.5 Score=36.21 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023871 217 QDLREGLQLYRTGKYEVAREKFESVLG 243 (276)
Q Consensus 217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~ 243 (276)
+.+.+|.++-+.|+|++|+.+|..|++
T Consensus 13 ~~~~~Av~~D~~g~~~eA~~~Y~~a~~ 39 (444)
T 2zan_A 13 DLASKAAQEDKAGNYEEALQLYQHAVQ 39 (444)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344666777888999999999998884
No 462
>2hsb_A Hypothetical UPF0332 protein AF0298; DUF103 family, structural genomics, joint center for structu genomics, JCSG; HET: MSE PG4; 1.95A {Archaeoglobus fulgidus}
Probab=33.12 E-value=88 Score=23.64 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 023871 208 KKEQKERREQDLREGLQLYRTGKYEVARE 236 (276)
Q Consensus 208 ~Kelkkqae~~~~eGnaLfk~grYeEAI~ 236 (276)
.+....++++.++.+..+++.|+|..|+.
T Consensus 5 ~~~~l~~A~~~L~~A~~~~~~g~y~~a~~ 33 (126)
T 2hsb_A 5 LELRIRKAEKLVQDAKKEFEMGLYERCCS 33 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 45677888888999999999999997743
No 463
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=32.24 E-value=53 Score=32.78 Aligned_cols=49 Identities=18% Similarity=0.180 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCCh
Q 023871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV 268 (276)
Q Consensus 217 ~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~ 268 (276)
..+.+|.++|..|+|+-|...-+.++..+|++.+ |..=+|-+|-+||..
T Consensus 451 ~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~---a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 451 RLLEQARASYARGEYRWVVEVVNRLVFAEPDNRA---ARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHHHHHh
Confidence 3478899999999999999999999999999964 555566666666543
No 464
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=31.83 E-value=70 Score=24.16 Aligned_cols=21 Identities=14% Similarity=0.184 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHHcCCCChhh
Q 023871 230 KYEVAREKFESVLGSKPTPEE 250 (276)
Q Consensus 230 rYeEAI~~Ye~AL~i~P~~~e 250 (276)
.|.+||+.|..+|..+|+...
T Consensus 37 ~Y~~Aie~l~~alk~e~~~~~ 57 (93)
T 1wfd_A 37 CYQEGIDMLLQVLKGTKESSK 57 (93)
T ss_dssp HHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHH
Confidence 467999999999988888753
No 465
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=31.23 E-value=1.4e+02 Score=27.22 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=42.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCC--------Ch-----------hhHHHHHHHHhHHHHhcCChhHHHhhh
Q 023871 218 DLREGLQLYRTGKYEVAREKFESVLGSKP--------TP-----------EESSVASYNVACCYSKLNQVPLLLALI 275 (276)
Q Consensus 218 ~~~eGnaLfk~grYeEAI~~Ye~AL~i~P--------~~-----------~e~a~A~YN~AcCyaKLgq~~eAI~aL 275 (276)
...+|......|+.++|++.+++||++=- .. ..+..+..-.+.++..+|++++|+..|
T Consensus 118 l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l 194 (388)
T 2ff4_A 118 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL 194 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34566666778999999999999997631 11 112455667788899999999998654
No 466
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=30.63 E-value=1.8e+02 Score=25.71 Aligned_cols=74 Identities=18% Similarity=0.215 Sum_probs=50.4
Q ss_pred cceEEEEecCcceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecc--cCCcceecccchhHHHHhh-cccCc
Q 023871 84 YEEYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV--FGTEIWPAAEYGRTMYTIR-QRVGP 160 (276)
Q Consensus 84 ~~~y~V~l~KPLGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~--fGdevw~a~~~g~~~~air-~r~gp 160 (276)
..+.|-|-.-||.+.+.. .|..+.|..-. +.| |.+|.+++++-+. =|..|=+-+ .++..|- ..+.|
T Consensus 25 ~~~~~~~~~~p~~~~~~~-~~~~~~v~~~~------~d~-~~~~~~~~~~ng~~~~~~~~~d~~---~v~~~iigk~N~P 93 (219)
T 2j3t_D 25 RAEAEKTFSYPLDLLLKL-HDERVLVAFGQ------RDG-IRVGHAVLAINGMDVNGRYTADGK---EVLEYLGNPANYP 93 (219)
T ss_dssp --CEEEEECSSCSSEEEE-CSSSEEEEECC------CTT-CCTTCEEEEETTEECBTTBCTTSS---BHHHHTTCGGGCS
T ss_pred CcceeeeccCCcceeeee-ccceeEEeecc------cCC-ccccceeeecCCccCCCcccccCc---eeeeeeecCCCCc
Confidence 345677888999999988 46778776533 566 9999999998653 333222211 4566554 56999
Q ss_pred eEEEEeec
Q 023871 161 LLMKMQKR 168 (276)
Q Consensus 161 v~L~l~R~ 168 (276)
++++.-.+
T Consensus 94 Lyir~f~~ 101 (219)
T 2j3t_D 94 VSIRFGRP 101 (219)
T ss_dssp EEEEEECC
T ss_pred eEEEecCC
Confidence 99998764
No 467
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=29.87 E-value=14 Score=28.46 Aligned_cols=34 Identities=12% Similarity=-0.014 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023871 208 KKEQKERREQDLREGLQLYRTGKYEVAREKFESV 241 (276)
Q Consensus 208 ~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~A 241 (276)
.++....++.-+++|...++.|++..|+.++.=|
T Consensus 28 a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa 61 (86)
T 2oo2_A 28 DEGFMRNIEAYISDSRYFLEKGDLVRAFECVVWA 61 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5677777878889999999999999999987543
No 468
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=29.52 E-value=20 Score=29.60 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=18.4
Q ss_pred CeEEEEeCCCCCcccccCcccCCEEE
Q 023871 106 GTYIDAIAPGGSADKTGMFQVGDKVL 131 (276)
Q Consensus 106 gv~V~~v~~ggnA~k~G~i~vGD~l~ 131 (276)
--||-|+..| .+++.| |++||+|.
T Consensus 116 a~~VLEl~aG-~~~~~g-i~~Gd~v~ 139 (140)
T 3m7a_A 116 TLAVLEINGG-LAARLG-IKPGDKVE 139 (140)
T ss_dssp CSEEEEEETT-HHHHHT-CCTTCEEE
T ss_pred ccEEEEeCcC-hHHHcC-CCCCCEEe
Confidence 4688888754 567777 99999985
No 469
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=28.09 E-value=81 Score=29.71 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChh
Q 023871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE 249 (276)
Q Consensus 215 ae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~ 249 (276)
++..+++++++|-.|+++.|...|++||...|+..
T Consensus 14 aR~vyer~l~~~P~~~~e~~~~iferal~~~ps~~ 48 (493)
T 2uy1_A 14 PSAIMEHARRLYMSKDYRSLESLFGRCLKKSYNLD 48 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCCCHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHhccCCCHH
Confidence 34567888888888999999999999999999753
No 470
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=26.95 E-value=2.3 Score=43.14 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=36.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHHHhcCChhHHHhh
Q 023871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVPLLLAL 274 (276)
Q Consensus 220 ~eGnaLfk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCyaKLgq~~eAI~a 274 (276)
.-|.++|..|.|+.|.-.|..+ +| |.-.|.|+.+||++++|+++
T Consensus 149 ~VGDrcf~e~lYeAAKilys~i----sN-------~akLAstLV~L~~yq~AVda 192 (624)
T 3lvg_A 149 QVGDRCYDEKMYDAAKLLYNNV----SN-------FGRLASTLVHLGEYQAAVDG 192 (624)
T ss_dssp HHHHHHHHSCCSTTSSTTGGGS----CC-------CTTTSSSSSSCSGGGSSTTT
T ss_pred HHHHHHHHccCHHHHHHHHHhC----cc-------HHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999998888654 22 55689999999999999886
No 471
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=26.58 E-value=1.2e+02 Score=25.25 Aligned_cols=52 Identities=15% Similarity=0.025 Sum_probs=35.7
Q ss_pred ceEEEEecCcce--eEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecccCCcceecc
Q 023871 85 EEYEVEIEQPYG--LKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA 145 (276)
Q Consensus 85 ~~y~V~l~KPLG--l~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~fGdevw~a~ 145 (276)
.+....|.+.|| +.-.+..||..+...|.-. --+.=-|..||+|+- ++||.+
T Consensus 31 ge~~g~V~e~lgn~~f~V~l~nG~~~La~I~GK--mRk~IwI~~GD~VlV-------e~~~yd 84 (143)
T 1d7q_A 31 GQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGK--LRKKVWINTSDIILV-------GLRDYQ 84 (143)
T ss_dssp TEEEEEEEEECSSSEEEEEETTTEEEEEECCSG--GGGSCCCCTTCEEEE-------ECSSSS
T ss_pred CEEEEEEEEEcCCCEEEEEeCCCCEEEEEeccc--ceeeEEecCCCEEEE-------eeccCC
Confidence 456777777777 4444557888888887733 334556899999987 566654
No 472
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=25.55 E-value=58 Score=25.66 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=14.1
Q ss_pred CcccccCcccCCEEEEee
Q 023871 117 SADKTGMFQVGDKVLATS 134 (276)
Q Consensus 117 nA~k~G~i~vGD~l~~~S 134 (276)
|.+.+..+++||+|+-+|
T Consensus 48 NGAAArl~~~GD~vII~a 65 (96)
T 1vc3_B 48 NGAAAHLVKPGDLVILVA 65 (96)
T ss_dssp EGGGGGTCCTTCEEEEEE
T ss_pred chHHHccCCCCCEEEEEE
Confidence 445556789999999888
No 473
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=24.95 E-value=98 Score=23.11 Aligned_cols=23 Identities=13% Similarity=0.070 Sum_probs=18.7
Q ss_pred cCCHHHHHHHHHHHHcCCCChhh
Q 023871 228 TGKYEVAREKFESVLGSKPTPEE 250 (276)
Q Consensus 228 ~grYeEAI~~Ye~AL~i~P~~~e 250 (276)
..-|.+||+.|-.++..+|+...
T Consensus 36 l~lY~~Aie~ll~alk~e~d~~~ 58 (86)
T 4a5x_A 36 LVCYQEGIDLLLQVLKGTKDNTK 58 (86)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCHHH
Confidence 34578999999999998888753
No 474
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=24.10 E-value=45 Score=24.92 Aligned_cols=46 Identities=11% Similarity=-0.034 Sum_probs=28.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCh
Q 023871 203 QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTP 248 (276)
Q Consensus 203 ~nYkk~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~AL~i~P~~ 248 (276)
++..++.++-+++-+.=+.|+---...-|.+||+.|..++..+||.
T Consensus 14 ~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e~d~ 59 (83)
T 2w2u_A 14 MLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDG 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 4455666666665333222222233345779999999999877765
No 475
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=23.40 E-value=1.3e+02 Score=25.30 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=14.5
Q ss_pred CcccccCcccCCEEEEee
Q 023871 117 SADKTGMFQVGDKVLATS 134 (276)
Q Consensus 117 nA~k~G~i~vGD~l~~~S 134 (276)
|.+.+..+++||+|+-+|
T Consensus 89 NGAAArl~~~GD~VII~s 106 (143)
T 1pqh_A 89 NGAAAHCASVGDIVIIAS 106 (143)
T ss_dssp CGGGGGTCCTTCEEEEEE
T ss_pred chHHHccCCCCCEEEEEE
Confidence 555566789999999888
No 476
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=22.95 E-value=4.4e+02 Score=24.59 Aligned_cols=44 Identities=9% Similarity=-0.027 Sum_probs=34.3
Q ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHcCCCChhhHHHHHHHHhHHH
Q 023871 219 LREGLQL-YRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY 262 (276)
Q Consensus 219 ~~eGnaL-fk~grYeEAI~~Ye~AL~i~P~~~e~a~A~YN~AcCy 262 (276)
++.|..+ ||.++|--|-.--.+-|++.|+......|.-=++.|-
T Consensus 210 Lr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce 254 (325)
T 3mv2_A 210 LQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKAD 254 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 4556666 8999999999999999999998766666666666664
No 477
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.14 E-value=1.9e+02 Score=23.26 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=7.6
Q ss_pred HHHHHHHHcC--CHHHHHHH
Q 023871 220 REGLQLYRTG--KYEVAREK 237 (276)
Q Consensus 220 ~eGnaLfk~g--rYeEAI~~ 237 (276)
..|+++|+.| .++.+|..
T Consensus 39 ~~Al~lYk~GI~eLe~Gl~I 58 (116)
T 2dl1_A 39 EEAKNYYKQGIGHLLRGISI 58 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 4444444432 34444443
No 478
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=22.01 E-value=41 Score=26.57 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=13.1
Q ss_pred cccccCcccCCEEEEee
Q 023871 118 ADKTGMFQVGDKVLATS 134 (276)
Q Consensus 118 A~k~G~i~vGD~l~~~S 134 (276)
.+.+..+++||+|+-+|
T Consensus 47 GAAArl~~~GD~vII~a 63 (97)
T 1uhe_A 47 GAAARKVAIGDVVIILA 63 (97)
T ss_dssp GGGGGGCCTTCEEEEEE
T ss_pred hHHHccCCCCCEEEEEE
Confidence 34455679999999888
No 479
>3dor_A Protein CT_858, CPAF; mature CPAF, dimer, transferase; 2.20A {Chlamydia trachomatis} PDB: 3dpm_A* 3dpn_A 3dja_A
Probab=21.61 E-value=1e+02 Score=31.14 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=28.0
Q ss_pred ceeEEeeeCCCCeEEEEeCCCCCcccccCcccCCEEEEeecc
Q 023871 95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136 (276)
Q Consensus 95 LGl~f~e~~dGgv~V~~v~~ggnA~k~G~i~vGD~l~~~Sa~ 136 (276)
+|+.+....||.+||..+....+ .|.+||.|+.+...
T Consensus 86 ~Pf~vki~iDG~i~V~dv~~~~s-----~I~vGdEIlsING~ 122 (583)
T 3dor_A 86 LPYTVQKSSDGRFYFVDIMTFSS-----EIRVGDELLEVDGA 122 (583)
T ss_dssp CSEEEEECTTSCEEEEEECSSCC-----SSCTTCEEEEETTE
T ss_pred CCeEEEEEECCcEEEEecccccc-----CCCCCCEEEEECCc
Confidence 46777767899999988743322 39999999998874
No 480
>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A
Probab=20.94 E-value=66 Score=25.11 Aligned_cols=12 Identities=25% Similarity=0.335 Sum_probs=9.8
Q ss_pred CcccCCEEEEee
Q 023871 123 MFQVGDKVLATS 134 (276)
Q Consensus 123 ~i~vGD~l~~~S 134 (276)
.+++||+|++--
T Consensus 61 ~VkvGD~Vlf~k 72 (99)
T 1p3h_A 61 DVAEGDTVIYSK 72 (99)
T ss_dssp SCCTTCEEEEEC
T ss_pred ccCCCCEEEECC
Confidence 599999999843
No 481
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=20.64 E-value=45 Score=26.56 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=13.7
Q ss_pred CcccccCcccCCEEEEee
Q 023871 117 SADKTGMFQVGDKVLATS 134 (276)
Q Consensus 117 nA~k~G~i~vGD~l~~~S 134 (276)
|.+.+..+++||+|+-+|
T Consensus 47 NGAAArl~~~GD~vII~a 64 (102)
T 3plx_B 47 NGAAARLAEVGDKVIIMS 64 (102)
T ss_dssp EGGGGGGCCTTCEEEEEE
T ss_pred CcHHHhccCCCCEEEEEE
Confidence 344455679999999988
No 482
>1ufb_A TT1696 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.90A {Thermus thermophilus} SCOP: a.24.16.3
Probab=20.41 E-value=1.7e+02 Score=22.15 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023871 208 KKEQKERREQDLREGLQLYRTGKYEVAREKFESV 241 (276)
Q Consensus 208 ~Kelkkqae~~~~eGnaLfk~grYeEAI~~Ye~A 241 (276)
.+....++++.++.+..+++.|+|+.|.-.-.+|
T Consensus 4 ~~~w~~~A~~~L~~A~~~~~~g~y~~a~f~a~qa 37 (127)
T 1ufb_A 4 ARDWLEQARHNLRHAQGSLGLGDYAWACFAAQQA 37 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 4456677777888888888999988665444333
No 483
>2kpp_A LIN0431 protein; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG, function; NMR {Listeria innocua}
Probab=20.23 E-value=1.2e+02 Score=24.16 Aligned_cols=47 Identities=15% Similarity=0.162 Sum_probs=33.6
Q ss_pred eEEEEecCcce-eEEeeeCCCCeEEEEeC-CCCCcccccCc-ccCCEEEE
Q 023871 86 EYEVEIEQPYG-LKFAKGRDGGTYIDAIA-PGGSADKTGMF-QVGDKVLA 132 (276)
Q Consensus 86 ~y~V~l~KPLG-l~f~e~~dGgv~V~~v~-~ggnA~k~G~i-~vGD~l~~ 132 (276)
.++++++-+.| ...=+-.||+|.|.+-. |.--.-+.|-| ++|+.++-
T Consensus 30 ~~~i~i~~~~G~~n~IeIkdg~vrv~es~CPdkiCv~~GwIsk~Gq~IVC 79 (114)
T 2kpp_A 30 NEQFTIKGKGAQYNLMEVDGERIRIKEDNSPDQVGVKMGWKSKAGDTIVC 79 (114)
T ss_dssp EEEEEEEEETTEEEEEEEESSCEEEEEECCSSCHHHHHCSBCSTTCEEEE
T ss_pred ceEEEEecCCCCEEEEEEECCEEEEEECCCCCeehhhcCCcCCCCCEEEE
Confidence 35677777788 33444569999996665 66778888877 77888765
Done!