BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023873
(276 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HBD|A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a
pdb|3HBE|X Chain X, Class Iv Chitinase Structure From Picea Abies At 1.55a
pdb|3HBH|A Chain A, Class Iv Chitinase Structure From Picea Abies At 2.25a
Length = 204
Score = 214 bits (544), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 105/207 (50%), Positives = 138/207 (66%), Gaps = 7/207 (3%)
Query: 74 SVADIVTPEFFNGILNQADASCVGKNFYSRSAFLDALGSFSQFGRIGTEENSRREIAAFF 133
SV I++ FFNG+ A +SC GK FY+ +AF+ A ++S FG G+ + +RE+AAFF
Sbjct: 1 SVGGIISQSFFNGLAGGAASSCEGKGFYTYNAFIAAANAYSGFGTTGSNDVKKRELAAFF 60
Query: 134 AHVTHETGHFCSIEEIDGPSKDYCDEENTQYPCNPSKGYYGRGPIQLSWNFNYGPAGNSI 193
A+V HETG C I E + P +YC +T +PC K Y+GRGP+QLSWN+NYG AG SI
Sbjct: 61 ANVMHETGGLCYINEKN-PPINYCQSSST-WPCTSGKSYHGRGPLQLSWNYNYGAAGKSI 118
Query: 194 GFDGLNAPETVANDPVISFKTALWYWTN----HVQSVMNQGFGATIRAINGALECDGGNP 249
GFDGLN PE V D ISFKTA+W+W H QGFG TI+AIN ++EC+GGN
Sbjct: 119 GFDGLNNPEKVGQDSTISFKTAVWFWMKNSNCHSAITSGQGFGGTIKAIN-SMECNGGNS 177
Query: 250 STVQARIRYFTEYCSQLGVSTGDNLTC 276
V +R+ Y+ + CSQLGV G N++C
Sbjct: 178 GEVSSRVNYYKKICSQLGVDPGANVSC 204
>pdb|1WVU|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|1WVU|B Chain B, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|B Chain B, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|C Chain C, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
Length = 265
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/188 (47%), Positives = 119/188 (63%), Gaps = 12/188 (6%)
Query: 100 FYSRSAFLDALGSFSQFGRIGTEENSRREIAAFFAHVTHETGHFCSIEEIDGPS-KDYCD 158
FY+ DAL ++ F + G++E +RE AAF A+V+HETG I+E++ + YCD
Sbjct: 79 FYTYKGLTDALSAYPAFAKTGSDEVKKREAAAFLANVSHETGGLFYIKEVNEANYPHYCD 138
Query: 159 EENTQYPCNPSKG-YYGRGPIQLSWNFNYGPAGNSIGFDGLNAPETVANDPVISFKTALW 217
+ Y C + YYGRGPIQLSWNFNY AG+++G + L P V DP +++KT LW
Sbjct: 139 TTQS-YGCPAGQAAYYGRGPIQLSWNFNYKAAGDALGINLLANPYLVEQDPAVAWKTGLW 197
Query: 218 YW---------TNHVQSVMNQGFGATIRAINGALECDGGNPSTVQARIRYFTEYCSQLGV 268
YW T H V N GFG TIR+INGALEC+GGNP+ VQ+RI FT++ LG
Sbjct: 198 YWNSQNGPGTMTPHNAIVNNAGFGETIRSINGALECNGGNPAQVQSRINKFTQFTQILGT 257
Query: 269 STGDNLTC 276
+TG NL+C
Sbjct: 258 TTGPNLSC 265
>pdb|1WVV|A Chain A, Crystal Structure Of Chitinase C Mutant E147q
pdb|1WVV|B Chain B, Crystal Structure Of Chitinase C Mutant E147q
Length = 265
Score = 171 bits (434), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 88/188 (46%), Positives = 119/188 (63%), Gaps = 12/188 (6%)
Query: 100 FYSRSAFLDALGSFSQFGRIGTEENSRREIAAFFAHVTHETGHFCSIEEIDGPS-KDYCD 158
FY+ DAL ++ F + G++E +RE AAF A+V+H+TG I+E++ + YCD
Sbjct: 79 FYTYKGLTDALSAYPAFAKTGSDEVKKREAAAFLANVSHQTGGLFYIKEVNEANYPHYCD 138
Query: 159 EENTQYPCNPSKG-YYGRGPIQLSWNFNYGPAGNSIGFDGLNAPETVANDPVISFKTALW 217
+ Y C + YYGRGPIQLSWNFNY AG+++G + L P V DP +++KT LW
Sbjct: 139 TTQS-YGCPAGQAAYYGRGPIQLSWNFNYKAAGDALGINLLANPYLVEQDPAVAWKTGLW 197
Query: 218 YW---------TNHVQSVMNQGFGATIRAINGALECDGGNPSTVQARIRYFTEYCSQLGV 268
YW T H V N GFG TIR+INGALEC+GGNP+ VQ+RI FT++ LG
Sbjct: 198 YWNSQNGPGTMTPHNAIVNNAGFGETIRSINGALECNGGNPAQVQSRINKFTQFTQILGT 257
Query: 269 STGDNLTC 276
+TG NL+C
Sbjct: 258 TTGPNLSC 265
>pdb|4DWX|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds
pdb|4DWX|B Chain B, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds
pdb|4DYG|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds In Complex With (Glcnac)4
pdb|4DYG|B Chain B, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds In Complex With (Glcnac)4
Length = 244
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 128/238 (53%), Gaps = 35/238 (14%)
Query: 73 VSVADIVT-PEFFNGILNQADASCVGKNFYSRSAFLDALGSFSQFGRIGTEENSRREIAA 131
+SV+ I++ +F +L++ D +C K FY+ AF+ A +F FG G+ + +R++AA
Sbjct: 1 MSVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAA 60
Query: 132 FFAHVTHET---------GHFC---SIEEIDGPSKDYCDEENTQYPCNPSKGYYGRGPIQ 179
F A +HET G F ++ G + DYC + Q+PC P K YYGRGPIQ
Sbjct: 61 FLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYC-TPSAQWPCAPGKRYYGRGPIQ 119
Query: 180 LSWNFNYGPAGNSIGFDGLNAPETVANDPVISFKTALWYW--------TNHV-------- 223
LS N+NYGPAG +IG D L P+ VA DP +SFKTALW+W ++H
Sbjct: 120 LSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSP 179
Query: 224 -----QSVMNQGFGATIRAINGALECDGGNPSTVQARIRYFTEYCSQLGVSTGDNLTC 276
+ GFG ING LEC G S V RI ++ YC LGV GDNL C
Sbjct: 180 SGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDC 237
>pdb|2Z37|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|B Chain B, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|C Chain C, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|D Chain D, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
Length = 244
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 116/233 (49%), Gaps = 35/233 (15%)
Query: 78 IVTPEFFNGILNQADASCVGKNFYSRSAFLDALGSFSQFGRIGTEENSRREIAAFFAHVT 137
I +F+ + + D C F++ AF+ A SF FG G ++EIAAFF +
Sbjct: 6 ISRDQFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFPSFGNTGDLAMRKKEIAAFFGQTS 65
Query: 138 HETGH-------------FCSIEEIDGPSKDYCDEENTQYPCNPSKGYYGRGPIQLSWNF 184
HET +C EEID S +CD N ++PC P K YYGRGP+ LSWN+
Sbjct: 66 HETTGGWSGAPDGANTWGYCYKEEID-KSDPHCDSNNLEWPCAPGKFYYGRGPMMLSWNY 124
Query: 185 NYGPAGNSIGFDGLNAPETVANDPVISFKTALWYWTN---------------------HV 223
NYGP G +G + L P+ ++DPVI+FKTA+W+W +
Sbjct: 125 NYGPCGRDLGLELLKNPDVASSDPVIAFKTAIWFWMTPQAPKPSCHDVITDQWEPSAADI 184
Query: 224 QSVMNQGFGATIRAINGALECDGGNPSTVQARIRYFTEYCSQLGVSTGDNLTC 276
+ G+G ING LEC G + + VQ RI ++T YC GV G N+ C
Sbjct: 185 SAGRLPGYGVITNIINGGLECAGRDVAKVQDRISFYTRYCGMFGVDPGSNIDC 237
>pdb|2Z38|A Chain A, Crystal Structure Of Chloride Bound Brassica Juncea
Chitinase Catalytic Module (Bjchi3)
Length = 247
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 116/233 (49%), Gaps = 35/233 (15%)
Query: 78 IVTPEFFNGILNQADASCVGKNFYSRSAFLDALGSFSQFGRIGTEENSRREIAAFFAHVT 137
I +F+ + + D C F++ AF+ A SF FG G ++EIAAFF +
Sbjct: 9 ISRDQFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFPSFGNTGDLAMRKKEIAAFFGQTS 68
Query: 138 HETGH-------------FCSIEEIDGPSKDYCDEENTQYPCNPSKGYYGRGPIQLSWNF 184
HET +C EEID S +CD N ++PC P K YYGRGP+ LSWN+
Sbjct: 69 HETTGGWSGAPDGANTWGYCYKEEID-KSDPHCDSNNLEWPCAPGKFYYGRGPMMLSWNY 127
Query: 185 NYGPAGNSIGFDGLNAPETVANDPVISFKTALWYWTN---------------------HV 223
NYGP G +G + L P+ ++DPVI+FKTA+W+W +
Sbjct: 128 NYGPCGRDLGLELLKNPDVASSDPVIAFKTAIWFWMTPQAPKPSCHDVITDQWEPSAADI 187
Query: 224 QSVMNQGFGATIRAINGALECDGGNPSTVQARIRYFTEYCSQLGVSTGDNLTC 276
+ G+G ING LEC G + + VQ RI ++T YC GV G N+ C
Sbjct: 188 SAGRLPGYGVITNIINGGLECAGRDVAKVQDRISFYTRYCGMFGVDPGSNIDC 240
>pdb|2Z39|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module Glu234ala Mutant (bjchi3-e234a)
pdb|2Z39|B Chain B, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module Glu234ala Mutant (bjchi3-e234a)
Length = 246
Score = 157 bits (397), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 115/233 (49%), Gaps = 35/233 (15%)
Query: 78 IVTPEFFNGILNQADASCVGKNFYSRSAFLDALGSFSQFGRIGTEENSRREIAAFFAHVT 137
I +F+ + + D C F++ AF+ A SF FG G ++EIAAFF +
Sbjct: 8 ISRDQFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFPSFGNTGDLAMRKKEIAAFFGQTS 67
Query: 138 HETGH-------------FCSIEEIDGPSKDYCDEENTQYPCNPSKGYYGRGPIQLSWNF 184
HET +C E ID S +CD N ++PC P K YYGRGP+ LSWN+
Sbjct: 68 HETTGGWSGAPDGANTWGYCYKEAID-KSDPHCDSNNLEWPCAPGKFYYGRGPMMLSWNY 126
Query: 185 NYGPAGNSIGFDGLNAPETVANDPVISFKTALWYWTN---------------------HV 223
NYGP G +G + L P+ ++DPVI+FKTA+W+W +
Sbjct: 127 NYGPCGRDLGLELLKNPDVASSDPVIAFKTAIWFWMTPQAPKPSCHDVITDQWEPSAADI 186
Query: 224 QSVMNQGFGATIRAINGALECDGGNPSTVQARIRYFTEYCSQLGVSTGDNLTC 276
+ G+G ING LEC G + + VQ RI ++T YC GV G N+ C
Sbjct: 187 SAGRLPGYGVITNIINGGLECAGRDVAKVQDRISFYTRYCGMFGVDPGSNIDC 239
>pdb|3CQL|A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica
Papaya
pdb|3CQL|B Chain B, Crystal Structure Of Gh Family 19 Chitinase From Carica
Papaya
Length = 243
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 123/237 (51%), Gaps = 37/237 (15%)
Query: 75 VADIVTPEFFNGIL-NQADASCVGKNFYSRSAFLDALGSFSQFGRIGTEENSRREIAAFF 133
+ I++ F+ +L ++ + +C K FY+ AF+ A SF FG G+ + +REIAAF
Sbjct: 2 IEKIISRSMFDQMLKHRNNPACPAKGFYTYDAFIAAAKSFPSFGTTGSTDVRKREIAAFL 61
Query: 134 AHVTHETGH-------------FCSIEEIDGPSKDYCDEENTQYPCNPSKGYYGRGPIQL 180
+HET +C ++E + PS +YC + +YPC P K YYGRGPIQL
Sbjct: 62 GQTSHETTGGWPSAPDGPYAWGYCFLKERN-PSSNYC-APSPRYPCAPGKSYYGRGPIQL 119
Query: 181 SWNFNYGPAGNSIGFDGLNAPETVANDPVISFKTALWYWTN------HVQSVMN------ 228
SWN+NYGP G ++ + L P+ VA D VISFKTALW+W V+
Sbjct: 120 SWNYNYGPCGEALRVNLLGNPDLVATDRVISFKTALWFWMTPQAPKPSCHDVITGRWQPS 179
Query: 229 ---------QGFGATIRAINGALECDGGNPSTVQARIRYFTEYCSQLGVSTGDNLTC 276
G+G ING LEC G V RI +F YC LGV TG+NL C
Sbjct: 180 AADTAAGRLPGYGVITNIINGGLECGKGPNPQVADRIGFFRRYCGILGVGTGNNLDC 236
>pdb|2CJL|A Chain A, Crystal Structure And Enzymatic Properties Of A Bacterial
Family 19 Chitinase Reveal Differences With Plant
Enzymes
pdb|2CJL|B Chain B, Crystal Structure And Enzymatic Properties Of A Bacterial
Family 19 Chitinase Reveal Differences With Plant
Enzymes
Length = 204
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/188 (44%), Positives = 110/188 (58%), Gaps = 12/188 (6%)
Query: 100 FYSRSAFLDALGSFSQFGRIGTEENSRREIAAFFAHVTHETGHFCSIEEIDGPS-KDYCD 158
FY+ S AL ++ F G++ ++E AAF A+V HETG + E + + YCD
Sbjct: 18 FYTYSGLTAALSAYPGFSNTGSDTVKKQEAAAFLANVGHETGGLVYVVEQNTANYPHYCD 77
Query: 159 EENTQYPCNP-SKGYYGRGPIQLSWNFNYGPAGNSIGFDGLNAPETVANDPVISFKTALW 217
Y C + YYGRGP+QLSWNFNY AG+++G D LN P+ V ND +++KT LW
Sbjct: 78 ASQP-YGCPAGNDKYYGRGPVQLSWNFNYKAAGDALGIDLLNNPDLVQNDSAVAWKTGLW 136
Query: 218 YW---------TNHVQSVMNQGFGATIRAINGALECDGGNPSTVQARIRYFTEYCSQLGV 268
YW T H V GFG TIR+ING+LECDGGNP VQ+RI + + LGV
Sbjct: 137 YWNTQTGPGTMTPHDAMVNGAGFGETIRSINGSLECDGGNPGQVQSRIDNYERFTQLLGV 196
Query: 269 STGDNLTC 276
G NL+C
Sbjct: 197 EPGGNLSC 204
>pdb|1CNS|A Chain A, Crystal Structure Of Chitinase At 1.91a Resolution
pdb|1CNS|B Chain B, Crystal Structure Of Chitinase At 1.91a Resolution
Length = 243
Score = 151 bits (382), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 96/237 (40%), Positives = 127/237 (53%), Gaps = 35/237 (14%)
Query: 74 SVADIVT-PEFFNGILNQADASCVGKNFYSRSAFLDALGSFSQFGRIGTEENSRREIAAF 132
SV+ IV+ +F +L++ D +C K FY+ AF+ A +FS FG G+ + +RE+AAF
Sbjct: 1 SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFSGFGTTGSADVQKREVAAF 60
Query: 133 FAHVTHET---------GHFC---SIEEIDGPSKDYCDEENTQYPCNPSKGYYGRGPIQL 180
A +HET G F ++ G S DYC + Q+PC P K YYGRGPIQL
Sbjct: 61 LAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYC-TPSAQWPCAPGKRYYGRGPIQL 119
Query: 181 SWNFNYGPAGNSIGFDGLNAPETVANDPVISFKTALWYW--------TNHVQSVMN---- 228
S N+NYGPAG +IG D L P+ VA D +SFKTA+W+W ++H V
Sbjct: 120 SHNYNYGPAGRAIGVDLLANPDLVATDATVSFKTAMWFWMTAQPPKPSSHAVIVGQWSPS 179
Query: 229 ---------QGFGATIRAINGALECDGGNPSTVQARIRYFTEYCSQLGVSTGDNLTC 276
GFG ING +EC G S V RI ++ YC LGV G+NL C
Sbjct: 180 GADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDC 236
>pdb|3W3E|A Chain A, Structure Of Vigna Unguiculata Chitinase With Regulation
Activity Of The Plant Cell Wall
pdb|3W3E|B Chain B, Structure Of Vigna Unguiculata Chitinase With Regulation
Activity Of The Plant Cell Wall
Length = 242
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 118/237 (49%), Gaps = 39/237 (16%)
Query: 75 VADIVTPEFFNGIL-NQADASCVGKNFYSRSAFLDALGSFSQFGRIGTEENSRREIAAFF 133
V ++ F+ +L ++ D +C GK FYS +AF+ A SF+ FG G +RE+AAF
Sbjct: 3 VGSVIGASLFDQLLKHRNDQACEGKGFYSYNAFITAARSFAAFGTTGDSNTRKREVAAFL 62
Query: 134 AHVTHETGH-------------FCSIEEIDGPSKDYCDEENTQYPCNPSKGYYGRGPIQL 180
A +HET +C + E D S YCD PC+ K YYGRGPIQL
Sbjct: 63 AQTSHETTGGAATSPDGPYAWGYCFVTERD-KSNRYCDGSG---PCSAGKSYYGRGPIQL 118
Query: 181 SWNFNYGPAGNSIGFDGLNAPETVANDPVISFKTALWYW--------------TNH---- 222
+ N+NY AG ++G D +N P+ VA D V+SFKTALW+W TN
Sbjct: 119 THNYNYNAAGRALGVDLINNPDLVARDAVVSFKTALWFWMTPQGNKPSCHDVITNRWTPS 178
Query: 223 -VQSVMNQ--GFGATIRAINGALECDGGNPSTVQARIRYFTEYCSQLGVSTGDNLTC 276
N+ GFG ING LEC G RI ++ YC GVS G NL C
Sbjct: 179 AADKAANRVPGFGVITNIINGGLECGKGPTPASGDRIGFYKRYCDVFGVSYGPNLNC 235
>pdb|2BAA|A Chain A, The Refined Crystal Structure Of An Endochitinase From
Hordeum Vulgare L. Seeds To 1.8 Angstroms Resolution
Length = 243
Score = 147 bits (370), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 126/238 (52%), Gaps = 37/238 (15%)
Query: 74 SVADIVT-PEFFNGILNQADASCVGKNFYSRSAFLDALGSFSQFGRIGTEENSRREIAAF 132
SV+ IV+ +F +L++ D +C K FY+ AF+ A +F FG G+ + +RE+AAF
Sbjct: 1 SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAF 60
Query: 133 FAHVTHET---------GHFC---SIEEIDGPSKDYCDEENTQYPCNPSKGYYGRGPIQL 180
A +HET G F ++ G S DYC + Q+PC P K YYGRGPIQL
Sbjct: 61 LAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYC-TPSAQWPCAPGKRYYGRGPIQL 119
Query: 181 SWNFNYGPAGNSIGFDGLNAPETVANDPVISFKTALWYW--------TNHVQSVMNQ--- 229
S N+NYGPAG +IG D L P+ VA D + FKTA+W+W ++H + Q
Sbjct: 120 SHNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHA-VIAGQWSP 178
Query: 230 -----------GFGATIRAINGALECDGGNPSTVQARIRYFTEYCSQLGVSTGDNLTC 276
GFG ING +EC G S V RI ++ YC LGV G+NL C
Sbjct: 179 SGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDC 236
>pdb|1DXJ|A Chain A, Structure Of The Chitinase From Jack Bean
Length = 242
Score = 144 bits (362), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 117/237 (49%), Gaps = 39/237 (16%)
Query: 75 VADIVTPEFFNGIL-NQADASCVGKNFYSRSAFLDALGSFSQFGRIGTEENSRREIAAFF 133
V ++ F+ +L ++ D +C GK FYS +AF+ A SF FG G +RE+AAF
Sbjct: 2 VGSVIDASLFDQLLKHRNDPACEGKGFYSYNAFVTAARSFGGFGTTGDTNTRKREVAAFL 61
Query: 134 AHVTHETGH-------------FCSIEEIDGPSKDYCDEENTQYPCNPSKGYYGRGPIQL 180
A +HET +C + E D +K YCD PC K YYGRGPIQL
Sbjct: 62 AQTSHETTGGAAGSPDGPYAWGYCFVTERDKSNK-YCDPGT---PCPAGKSYYGRGPIQL 117
Query: 181 SWNFNYGPAGNSIGFDGLNAPETVANDPVISFKTALWYW--------------TNH---- 222
+ N+NY AG ++G D +N P+ VA D VISFKTA+W+W TN
Sbjct: 118 THNYNYAQAGRALGVDLINNPDLVARDAVISFKTAIWFWMTPQGNKPSCHDVITNRWTPS 177
Query: 223 ---VQSVMNQGFGATIRAINGALECDGGNPSTVQARIRYFTEYCSQLGVSTGDNLTC 276
V + GFG ING +EC G RI ++ YC L +S G NL C
Sbjct: 178 AADVAANRTPGFGVITNIINGGIECGRGPSPASGDRIGFYKRYCDVLHLSYGPNLNC 234
>pdb|2DKV|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
pdb|3IWR|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
pdb|3IWR|B Chain B, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
Length = 309
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 123/237 (51%), Gaps = 37/237 (15%)
Query: 75 VADIVTPEFFNGIL-NQADASCVGKNFYSRSAFLDALGSFSQFGRIGTEENSRREIAAFF 133
V IV + F +L ++ D +C + FY+ AFL A +F FG G E +RE+AAF
Sbjct: 58 VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFL 117
Query: 134 AHVTHETGH-------------FCSIEEIDGPSKDYCDEENTQYPCNPSKGYYGRGPIQL 180
+HET +C +E + PS DYC + + ++PC P + YYGRGPIQL
Sbjct: 118 GQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPS-DYC-QPSPEWPCAPGRKYYGRGPIQL 175
Query: 181 SWNFNYGPAGNSIGFDGLNAPETVANDPVISFKTALWYW--------TNH---------- 222
S+NFNYGPAG +IG D L+ P+ VA D +SFKTALW+W ++H
Sbjct: 176 SFNFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPS 235
Query: 223 ---VQSVMNQGFGATIRAINGALECDGGNPSTVQARIRYFTEYCSQLGVSTGDNLTC 276
+ G+G +NG LEC G V RI ++ YC G+ TG NL C
Sbjct: 236 PADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDC 292
>pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QR1|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QRC|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRC|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRD|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRD|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRE|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
pdb|2QRE|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
Length = 334
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 84 FNGILNQADASCVGKNFYSRSAFLDALGSFSQFGRIGTEENSRR 127
F G+L AD V K +Y S+F +A+ +F +G E R+
Sbjct: 68 FAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERK 111
>pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOX|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOY|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
pdb|2OOY|E Chain E, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
Length = 333
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 84 FNGILNQADASCVGKNFYSRSAFLDALGSFSQFGRIGTEENSRR 127
F G+L AD V K +Y S+F +A+ +F +G E R+
Sbjct: 67 FAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERK 110
>pdb|1TXU|A Chain A, Crystal Structure Of The Vps9 Domain Of Rabex-5
Length = 273
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 246 GGNPSTVQARIRYFTEYCSQLGVSTGDN 273
GNP +Q+ I+Y T +C+ + TG++
Sbjct: 204 KGNPPRLQSNIQYITRFCNPSRLXTGED 231
>pdb|2OT3|A Chain A, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 274
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 246 GGNPSTVQARIRYFTEYCSQLGVSTGDN 273
GNP +Q+ I+Y T +C+ + TG++
Sbjct: 202 KGNPPRLQSNIQYITRFCNPSRLMTGED 229
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,698,307
Number of Sequences: 62578
Number of extensions: 312125
Number of successful extensions: 576
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 528
Number of HSP's gapped (non-prelim): 23
length of query: 276
length of database: 14,973,337
effective HSP length: 97
effective length of query: 179
effective length of database: 8,903,271
effective search space: 1593685509
effective search space used: 1593685509
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)