Query 023873
Match_columns 276
No_of_seqs 260 out of 1205
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 07:16:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023873.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023873hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4742 Predicted chitinase [G 100.0 2.6E-68 5.7E-73 483.0 13.5 246 20-276 17-286 (286)
2 cd00325 chitinase_glyco_hydro_ 100.0 3.3E-66 7.2E-71 463.2 13.3 198 79-276 1-230 (230)
3 PF00182 Glyco_hydro_19: Chiti 100.0 3.7E-66 8.1E-71 464.1 8.7 198 78-276 1-232 (232)
4 COG3179 Predicted chitinase [G 100.0 2.7E-35 5.8E-40 252.3 10.3 169 77-266 2-204 (206)
5 cd00442 lysozyme_like lysozyme 99.5 5.2E-15 1.1E-19 117.5 3.2 81 130-222 1-81 (105)
6 PF00187 Chitin_bind_1: Chitin 99.1 9.6E-12 2.1E-16 82.5 0.1 33 31-64 1-40 (40)
7 smart00270 ChtBD1 Chitin bindi 98.8 2.1E-09 4.6E-14 70.4 1.6 28 36-64 11-38 (38)
8 cd00035 ChtBD1 Chitin binding 98.5 8.7E-08 1.9E-12 63.7 2.2 29 36-65 11-39 (40)
9 cd06918 ChtBD1_like Domain obs 95.0 0.012 2.6E-07 41.1 1.4 18 39-56 27-44 (51)
10 KOG3625 Alpha amylase [Carbohy 66.0 6 0.00013 42.8 3.5 50 175-226 1092-1148(1521)
11 PF15240 Pro-rich: Proline-ric 40.9 18 0.00038 31.8 1.8 9 10-18 1-9 (179)
12 PF06607 Prokineticin: Prokine 40.3 13 0.00028 29.4 0.8 31 25-56 17-51 (97)
13 PRK13722 lytic transglycosylas 40.3 1E+02 0.0022 26.7 6.4 80 175-265 62-141 (169)
14 PF11364 DUF3165: Protein of u 32.9 27 0.00059 26.7 1.5 22 1-22 17-38 (81)
15 PF09447 Cnl2_NKP2: Cnl2/NKP2 23.3 59 0.0013 24.0 1.8 22 72-93 13-34 (67)
16 PF05624 LSR: Lipolysis stimul 22.6 26 0.00057 24.0 -0.2 21 12-32 5-25 (49)
17 PF01337 Barstar: Barstar (bar 21.8 38 0.00083 25.4 0.6 26 250-275 6-33 (90)
18 PRK15328 invasion protein IagB 20.0 2.2E+02 0.0048 24.3 5.0 79 173-264 59-137 (160)
No 1
>KOG4742 consensus Predicted chitinase [General function prediction only]
Probab=100.00 E-value=2.6e-68 Score=482.97 Aligned_cols=246 Identities=51% Similarity=1.006 Sum_probs=223.2
Q ss_pred HHHHhcccccccccCCCCCCCcccccccccCCcccccCCcccCCCCCC-CCCCCCCcccccchhhHhhhhcccCcc-ccC
Q 023873 20 SAAAMMPRSVMAQNCGCAAGLCCSRWGFCGTGDDYCGTGCQQGPCNPP-PPTNDVSVADIVTPEFFNGILNQADAS-CVG 97 (276)
Q Consensus 20 ~~~~~~~~~~~~~~c~c~~~~ccs~~g~cg~~~~~c~~~cq~~~c~~~-~~~~~~sv~~iIT~~~fn~i~p~a~~~-c~~ 97 (276)
++++..+.++.+|+|+ +.. ++.+||+.+|+++||..+ ++++..+++++||+++|+.||++.+.+ |++
T Consensus 17 ~~~~~~~~~~~~q~~~-~~~----------~~~~~~~~~c~~g~c~~~~~~~p~~~i~~~~T~~~F~~i~~~~~~g~c~~ 85 (286)
T KOG4742|consen 17 FLLLQSSSTVASQNCG-ASN----------TTPPYCKFGCGPGPCSGPGPPNPASKIESSVTPELFEDIFSKVGSGWCPA 85 (286)
T ss_pred HHHHHHHHhhhcccCC-CCc----------cccccccCCCCCCCCCCCCCCCCcccccccccHHHHHHHhccccCCCCCC
Confidence 4556667888999996 333 778999999999999876 455788999999999999999997776 999
Q ss_pred CCcccHHHHHHHhhhhhhcCCCCCCCCCHHHHHhhhccccccc---------C----CCccccccCCCCccccccCCCC-
Q 023873 98 KNFYSRSAFLDALGSFSQFGRIGTEENSRREIAAFFAHVTHET---------G----HFCSIEEIDGPSKDYCDEENTQ- 163 (276)
Q Consensus 98 ~~fyt~~~fi~a~~~~~~fg~~g~~~~t~~e~AaFlAq~~hET---------~----~f~~~~E~~~~~~~y~~~~n~~- 163 (276)
++||||++|+.|++.||+||.+|+..+.+||+|+||||+.||| | +|++.||+..+...||+.++..
T Consensus 86 ~gfyty~aFi~Aa~sfp~fg~t~~~~~~kreiAaf~ah~~~ETs~g~~~~~~G~~~~~fc~~~e~s~~~~~YC~~s~~~~ 165 (286)
T KOG4742|consen 86 KGFYTYDAFIIAARSFPEFGGTGNKNTAKREIAAFFAHVTHETSGGSNCAPRGPFYWGFCYKEEISPSSGRYCDASNQIT 165 (286)
T ss_pred CCCccccHHHHHHHhcccccccCcccccchhhhhhhhhheecccCcccccCCCccccCcccccccChhhhccCCcccceE
Confidence 9999999999999999999999999999999999999999999 6 8999999988557899998776
Q ss_pred CCCCCCCCcccCCCccccchhhHHHHHhhhCCCCCCCccccccCcchhhhHHHHHHHhhhhhhh-------ccCccccce
Q 023873 164 YPCNPSKGYYGRGPIQLSWNFNYGPAGNSIGFDGLNAPETVANDPVISFKTALWYWTNHVQSVM-------NQGFGATIR 236 (276)
Q Consensus 164 ~~~~dG~~Y~GRG~iQLT~~~NY~~~g~~~g~dl~~~Pdlva~d~~~a~~sA~wfW~~~~~~~~-------~~gf~~~t~ 236 (276)
|||.+|+.|+|||+|||+|||||+++++++|+|||+|||+|++||.+||++|+||||+....+. .++||.||+
T Consensus 166 yPCs~gk~Y~GRG~iQlsWNyNYG~ag~alg~dLL~~Pe~V~~np~lAf~~alWfwmt~~~p~~~~~a~~~~~gFGaTt~ 245 (286)
T KOG4742|consen 166 YPCSPGKSYYGRGPIQLSWNYNYGAAGKALGLDLLRNPELVAMNPVLAFKAALWFWMTPVRPVLNDFAAYDTPGFGATTR 245 (286)
T ss_pred eecCCCCcccccCcccccccccccHhHhhcCchhhcCcchhccCchhhhheeeeeeccCCchhhhhhhcccCCCcchhhh
Confidence 9999999999999999999999999999999999999999999999999999999999754333 358999999
Q ss_pred eccCccccCCCCchh-HHHHHHHHHHHHHHcCCCCCCCCCC
Q 023873 237 AINGALECDGGNPST-VQARIRYFTEYCSQLGVSTGDNLTC 276 (276)
Q Consensus 237 iINGg~ec~~~~~~~-~~~R~~~y~~~~~~Lgv~~g~nl~c 276 (276)
+|||++||++++.++ .++||++|+.+|++|||.||+||+|
T Consensus 246 ~Ing~~EC~~~~~~~~~~~Ri~~y~~~c~~fGv~pG~nLsC 286 (286)
T KOG4742|consen 246 AINGDLECGGGNLDGVKARRIKYYLAYCGLFGVNPGPNLSC 286 (286)
T ss_pred hhccceeccCCCCCcchhHHHHHHHHHHHhhCCCCCCCCCC
Confidence 999999999988554 4559999999999999999999999
No 2
>cd00325 chitinase_glyco_hydro_19 Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different en
Probab=100.00 E-value=3.3e-66 Score=463.16 Aligned_cols=198 Identities=55% Similarity=1.078 Sum_probs=184.0
Q ss_pred cchhhHhhhhccc-CccccCCCcccHHHHHHHhhhhhhcCCCCCCCCCHHHHHhhhcccccccCCCccccccCCCCcccc
Q 023873 79 VTPEFFNGILNQA-DASCVGKNFYSRSAFLDALGSFSQFGRIGTEENSRREIAAFFAHVTHETGHFCSIEEIDGPSKDYC 157 (276)
Q Consensus 79 IT~~~fn~i~p~a-~~~c~~~~fyt~~~fi~a~~~~~~fg~~g~~~~t~~e~AaFlAq~~hET~~f~~~~E~~~~~~~y~ 157 (276)
||+++|++|||+. +..|++++||||++||+|+++||+|+++|++.++|+|+||||||++|||++|++++|....+..||
T Consensus 1 ~t~~~f~~~~~~~~~~~c~~~~fYTy~~fi~Aa~~fp~f~~~g~~~~~krElAaFlAq~~hETgg~~~~~e~~~~~~g~c 80 (230)
T cd00325 1 VTESLFEGIFSHRNDSGCPAKGFYTYDAFITAANSFPGFGTTGDDDTRKREIAAFFAHTSHETGGGCYIAPDGPYAWGYC 80 (230)
T ss_pred CCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHhccccccCCCchhhHHHHHHHHhhhcccCCCCccccccccccCCcc
Confidence 6899999999996 678999999999999999999999999999999999999999999999999999999765545566
Q ss_pred ccCC----------CCCCCCCCCCcccCCCccccchhhHHHHHhhhCCCCCCCccccccCcchhhhHHHHHHHhh-----
Q 023873 158 DEEN----------TQYPCNPSKGYYGRGPIQLSWNFNYGPAGNSIGFDGLNAPETVANDPVISFKTALWYWTNH----- 222 (276)
Q Consensus 158 ~~~n----------~~~~~~dG~~Y~GRG~iQLT~~~NY~~~g~~~g~dl~~~Pdlva~d~~~a~~sA~wfW~~~----- 222 (276)
.... .+|||+||++|||||+||||||+||+++++++++|||+|||+|++||++||++|+||||++
T Consensus 81 ~~~e~~~~~~~~~~~~~pc~dG~~Y~GRG~iQLT~~~NY~~~g~~lg~dll~~Pdlva~dp~~a~~sA~WfW~t~~~~k~ 160 (230)
T cd00325 81 DKSETGPPSSYCDPAQWPCAPGKKYYGRGPIQLSWNYNYGPAGKALGFDLLNNPDLVATDPVVSFKTAIWFWMTPQGPKP 160 (230)
T ss_pred ccccCCCcccccccCCCCCCcccccccCCceeeeehhhHHHHHHHhCCccccCHHHHhcCchhhhhhhhhheeeCCCCCC
Confidence 5421 5689999999999999999999999999999999999999999999999999999999993
Q ss_pred -hhhhh---------------ccCccccceeccCccccCCCCchhHHHHHHHHHHHHHHcCCCCCCCCCC
Q 023873 223 -VQSVM---------------NQGFGATIRAINGALECDGGNPSTVQARIRYFTEYCSQLGVSTGDNLTC 276 (276)
Q Consensus 223 -~~~~~---------------~~gf~~~t~iINGg~ec~~~~~~~~~~R~~~y~~~~~~Lgv~~g~nl~c 276 (276)
+|+|| .+||+.||+|||||+||++++++++++||++|+++|++|||+||+||+|
T Consensus 161 s~h~vi~g~w~p~~~d~a~~~~~gfg~tt~iINGg~EC~~~~~~~~~~Ri~~Y~~~~~~lgv~~g~nL~C 230 (230)
T cd00325 161 SCHDVITGTWTPSAADTAAGRGPGFGATTNIINGGLECGGGNPDQVQNRIGYYKRYCDMLGVSPGDNLDC 230 (230)
T ss_pred CcceeeccCcCCchhhhhccccCChhhhheeecCCcccCCCCchHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 67776 2579999999999999999999999999999999999999999999999
No 3
>PF00182 Glyco_hydro_19: Chitinase class I; InterPro: IPR000726 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 19 GH19 from CAZY comprises enzymes with only one known activity; chitinase (3.2.1.14 from EC). Chitinases [] are enzymes that catalyse the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Chitinases belong to glycoside hydrolase families 18 or 19 []. Chitinases of family 19 (also known as classes IA or I and IB or II) are enzymes from plants that function in the defence against fungal and insect pathogens by destroying their chitin-containing cell wall. Class IA/I and IB/II enzymes differ in the presence (IA/I) or absence (IB/II) of a N-terminal chitin-binding domain. The catalytic domain of these enzymes consist of about 220 to 230 amino acid residues.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 3IWR_A 2DKV_A 3CQL_A 2Z38_A 2Z37_D 2Z39_B 1DXJ_A 1WVU_B 1WVV_B 2DBT_C ....
Probab=100.00 E-value=3.7e-66 Score=464.10 Aligned_cols=198 Identities=52% Similarity=1.041 Sum_probs=166.6
Q ss_pred ccchhhHhhhhcccC-ccccCCCcccHHHHHHHhhhhhhcCCCCCCCCCHHHHHhhhcccccccCCCccccccCCCC---
Q 023873 78 IVTPEFFNGILNQAD-ASCVGKNFYSRSAFLDALGSFSQFGRIGTEENSRREIAAFFAHVTHETGHFCSIEEIDGPS--- 153 (276)
Q Consensus 78 iIT~~~fn~i~p~a~-~~c~~~~fyt~~~fi~a~~~~~~fg~~g~~~~t~~e~AaFlAq~~hET~~f~~~~E~~~~~--- 153 (276)
|||+++|++|||+.+ ..|++++||||++||+|+++||+|+++|++.++||||||||||++|||++|.+++|....+
T Consensus 1 ivt~~~F~~~~~~~n~~~c~~~~FYTY~~Fi~Aa~~fp~F~~tG~~~~~krElAAFLA~~~hET~g~~~~~e~~~~~~gy 80 (232)
T PF00182_consen 1 IVTESFFNQMFPHRNDNGCPGKGFYTYDAFIAAAKSFPAFGNTGDDEDRKRELAAFLAQVSHETGGFWYIEEIGPYAWGY 80 (232)
T ss_dssp TS-HHHHHHHTTTTTSTTSTTTTTS-HHHHHHHHTTSTTTTTSSSHHHHHHHHHHHHHHHHHHTTTTTTTBTTSGGGGTT
T ss_pred CCCHHHHHHHHhcCCccCCCCCCcccHHHHHHHhhcCchhccCccHHHHHHHHHhhhcccchhccccccccccccccccc
Confidence 799999999999965 7899999999999999999999999999999999999999999999999999998875322
Q ss_pred ---------ccccccCCCCCCCCCCCCcccCCCccccchhhHHHHHhhhCCCCCCCccccccCcchhhhHHHHHHHhh--
Q 023873 154 ---------KDYCDEENTQYPCNPSKGYYGRGPIQLSWNFNYGPAGNSIGFDGLNAPETVANDPVISFKTALWYWTNH-- 222 (276)
Q Consensus 154 ---------~~y~~~~n~~~~~~dG~~Y~GRG~iQLT~~~NY~~~g~~~g~dl~~~Pdlva~d~~~a~~sA~wfW~~~-- 222 (276)
..||+. +.++||+||++|||||+||||||+||+++++++|+||++|||||++||.+||++|+||||++
T Consensus 81 c~~~e~~~~~~y~~~-~~~~p~~~g~~Y~GRG~iQLT~~~NY~~~g~~lg~dl~~nP~lv~~d~~~a~~sA~wfW~~~~~ 159 (232)
T PF00182_consen 81 CYKREKGANSDYCNR-NGNYPCGDGKKYYGRGPIQLTWNYNYGAFGEALGLDLLNNPDLVATDPWLAFKSAIWFWMTPQP 159 (232)
T ss_dssp S-SB-SS-SSGG--T-TSSS--TTTTGGS-BTTTTB-SHHHHHHHHHHHTS-TTT-TTHHHH-HHHHHHHHHHHHHHSBT
T ss_pred ccccccCCccccccC-ccCccCCCCCeEecccccccchhhhHHHHHHHhCCccccChHHHHhhHHHHHHhhhhheeecCC
Confidence 345544 36789999999999999999999999999999999999999999999999999999999995
Q ss_pred ----hhhhhc---------------cCccccceeccCccccCCCCchhHHHHHHHHHHHHHHcCCCCCCCCCC
Q 023873 223 ----VQSVMN---------------QGFGATIRAINGALECDGGNPSTVQARIRYFTEYCSQLGVSTGDNLTC 276 (276)
Q Consensus 223 ----~~~~~~---------------~gf~~~t~iINGg~ec~~~~~~~~~~R~~~y~~~~~~Lgv~~g~nl~c 276 (276)
+|++|. +||+.||+|||||+||+++++.++++||++|+++|++|||+||+||+|
T Consensus 160 ~~ps~h~vi~~~w~p~~~~~~~~r~~gfG~t~~iINgg~Ec~~~~~~~~~~Ri~~y~~~~~~~~v~~g~nl~C 232 (232)
T PF00182_consen 160 PKPSCHDVITGQWTPSAADLAAGRVPGFGATTNIINGGLECGGGNTDQVQNRIGYYKRYCDMLGVDPGDNLDC 232 (232)
T ss_dssp TBSSHHHHHTTSS-HHHHHHHTTTTSSHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHT----S----
T ss_pred CccCcchhcccccCCchhhhhhccCCCcchhhhhccCccccCCCCchHHhHHHHHHHHHHHHhCCCCCCCCCC
Confidence 888872 589999999999999999999999999999999999999999999999
No 4
>COG3179 Predicted chitinase [General function prediction only]
Probab=100.00 E-value=2.7e-35 Score=252.32 Aligned_cols=169 Identities=25% Similarity=0.386 Sum_probs=141.2
Q ss_pred cccchhhHhhhhcccCccccCCCcccHHHHHHHhhh-hhhcCCCCCCCCCHHHHHhhhcccccccCCCccccccC-CCC-
Q 023873 77 DIVTPEFFNGILNQADASCVGKNFYSRSAFLDALGS-FSQFGRIGTEENSRREIAAFFAHVTHETGHFCSIEEID-GPS- 153 (276)
Q Consensus 77 ~iIT~~~fn~i~p~a~~~c~~~~fyt~~~fi~a~~~-~~~fg~~g~~~~t~~e~AaFlAq~~hET~~f~~~~E~~-~~~- 153 (276)
..||+.+|.+|+|++.. . ...++.|+.. ..+|| |++|.++||||||+.|||++|..+.|+. +|.
T Consensus 2 ~~i~e~~~~ki~p~a~k-----~---~~~v~~al~~~l~~~g-----i~~p~r~AmFlAQ~~HESggf~rl~EnlnYSaq 68 (206)
T COG3179 2 KTITEVDLRKIFPKARK-----E---FVDVIVALQPALDEAG-----ITTPLRQAMFLAQVMHESGGFTRLDENLNYSAQ 68 (206)
T ss_pred cchhHHHHHHhcchhhh-----h---hHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHhhhcCCceeehhhcchHHH
Confidence 35789999999998642 1 3457777776 57885 9999999999999999999999988863 331
Q ss_pred -------cc---------------------cc-ccCCCCCCCCCCCCcccCCCccccchhhHHHHHhhhCCCCCCCcccc
Q 023873 154 -------KD---------------------YC-DEENTQYPCNPSKGYYGRGPIQLSWNFNYGPAGNSIGFDGLNAPETV 204 (276)
Q Consensus 154 -------~~---------------------y~-~~~n~~~~~~dG~~Y~GRG~iQLT~~~NY~~~g~~~g~dl~~~Pdlv 204 (276)
+. |- ..+|.....+|||.|||||.|||||+.||..+++++|+||+.||+.+
T Consensus 69 ~L~~tf~~r~~~~~~a~~~~g~p~aian~~y~~RlGN~~e~sgDGw~yRgrg~iQiTGrdNY~~~g~alg~dlv~~P~~~ 148 (206)
T COG3179 69 GLLQTFPKRFPDFRYAREIAGNPPAIANRVYGTRLGNGPEKSGDGWLYRGRGLIQITGRDNYRRCGRALGLDLVANPGQL 148 (206)
T ss_pred HHHHhccccCCchhhhhhhccChHHHHhhhhcccccCCCCCCCCceeeccCcceeeecchHHHHHHHhhCCCccCChhhh
Confidence 00 10 11456667899999999999999999999999999999999999999
Q ss_pred ccCcchhhhHHHHHHHhh-hhhhhccC-ccccceeccCccccCCCCchhHHHHHHHHHHHHHHc
Q 023873 205 ANDPVISFKTALWYWTNH-VQSVMNQG-FGATIRAINGALECDGGNPSTVQARIRYFTEYCSQL 266 (276)
Q Consensus 205 a~d~~~a~~sA~wfW~~~-~~~~~~~g-f~~~t~iINGg~ec~~~~~~~~~~R~~~y~~~~~~L 266 (276)
.. +.++.++|+|||.++ |+..+|.| +..||++||||. ||++||...|+++..++
T Consensus 149 ~~-~~~~a~~a~wyw~~~g~n~~aD~gd~~~VT~~INGG~-------NG~~dR~~r~~~a~~v~ 204 (206)
T COG3179 149 EL-DPHAARVAAWYWKTRGLNALADEGDLVRVTRKINGGL-------NGLDDRLARYRRASGVL 204 (206)
T ss_pred cc-ChHhhhhHHHHHHhccHHHhhccCChhhhhhhhcCcc-------ccHHHHHHHHHHHhccc
Confidence 87 567999999999995 78888764 999999999998 99999999999987654
No 5
>cd00442 lysozyme_like lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides.
Probab=99.52 E-value=5.2e-15 Score=117.48 Aligned_cols=81 Identities=21% Similarity=0.151 Sum_probs=72.9
Q ss_pred HhhhcccccccCCCccccccCCCCccccccCCCCCCCCCCCCcccCCCccccchhhHHHHHhhhCCCCCCCccccccCcc
Q 023873 130 AAFFAHVTHETGHFCSIEEIDGPSKDYCDEENTQYPCNPSKGYYGRGPIQLSWNFNYGPAGNSIGFDGLNAPETVANDPV 209 (276)
Q Consensus 130 AaFlAq~~hET~~f~~~~E~~~~~~~y~~~~n~~~~~~dG~~Y~GRG~iQLT~~~NY~~~g~~~g~dl~~~Pdlva~d~~ 209 (276)
|.|.++.+||+.++...++. .|| ||..|..|+|||+||+||++||...++.+++|++++|++++.+|.
T Consensus 1 a~~~~i~~~E~~~~~~~~~~-----Gy~-------~~~~~~~~~~~G~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (105)
T cd00442 1 AIIDMLASSEGTDLKAYKDR-----GHG-------TLNPGERGYGIGLYQLTSRWSDAYRARGIGLKLLAQLILKLFNPK 68 (105)
T ss_pred ChhhhhhhcccCCCcccccC-----CCC-------CCCCCCcccccCceeeeeccCccccccccCcchhcCcchhccCch
Confidence 57899999999999877653 255 566788999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhh
Q 023873 210 ISFKTALWYWTNH 222 (276)
Q Consensus 210 ~a~~sA~wfW~~~ 222 (276)
+++..+.||||+.
T Consensus 69 ~~~~~a~~~~~~~ 81 (105)
T cd00442 69 VQDKQALQQIKNA 81 (105)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999984
No 6
>PF00187 Chitin_bind_1: Chitin recognition protein; InterPro: IPR001002 A number of plant and fungal proteins that bind N-acetylglucosamine (e.g. solanaceous lectins of tomato and potato, plant endochitinases, the wound-induced proteins: hevein, win1 and win2, and the Kluyveromyces lactis killer toxin alpha subunit) contain this domain []. The domain may occur in one or more copies and is thought to be involved in recognition or binding of chitin subunits [, ]. In chitinases, as well as in the potato wound-induced proteins, the 43-residue domain directly follows the signal sequence and is therefore at the N terminus of the mature protein; in the killer toxin alpha subunit it is located in the central section of the protein. ; GO: 0008061 chitin binding; PDB: 9WGA_B 2WGC_B 1ULK_B 2UVO_B 1WGC_B 2CWG_A 2X3T_C 4AML_B 7WGA_B 1ZWU_A ....
Probab=99.12 E-value=9.6e-12 Score=82.46 Aligned_cols=33 Identities=67% Similarity=1.732 Sum_probs=27.9
Q ss_pred cccCC-------CCCCCcccccccccCCcccccCCcccCCC
Q 023873 31 AQNCG-------CAAGLCCSRWGFCGTGDDYCGTGCQQGPC 64 (276)
Q Consensus 31 ~~~c~-------c~~~~ccs~~g~cg~~~~~c~~~cq~~~c 64 (276)
||+|| ||.++|||+|||||++.+||+.+|| ++|
T Consensus 1 a~~CG~~~~~~~Cp~~~CCS~~G~CG~t~~yCg~gCQ-~~C 40 (40)
T PF00187_consen 1 AQRCGRQAGGATCPNGLCCSQYGYCGTTSDYCGAGCQ-SQC 40 (40)
T ss_dssp -CBSSGGGTTBBSGGG-EEETTSBEESSHHHHSTTEE-SST
T ss_pred CcccccCcCCCcCCCCCccCCCCcccCChhhhhcccc-cCC
Confidence 46775 9999999999999999999999999 445
No 7
>smart00270 ChtBD1 Chitin binding domain.
Probab=98.79 E-value=2.1e-09 Score=70.43 Aligned_cols=28 Identities=61% Similarity=1.770 Sum_probs=26.1
Q ss_pred CCCCCcccccccccCCcccccCCcccCCC
Q 023873 36 CAAGLCCSRWGFCGTGDDYCGTGCQQGPC 64 (276)
Q Consensus 36 c~~~~ccs~~g~cg~~~~~c~~~cq~~~c 64 (276)
|+.+.|||+|||||++.+||+.|||++ |
T Consensus 11 C~~~~CCS~~G~CG~t~~yCg~gCqs~-c 38 (38)
T smart00270 11 CPNNLCCSQFGYCGSGDEYCGKGCQSQ-C 38 (38)
T ss_pred CCCCCccCCCcCccCCHHHHhccccCC-C
Confidence 888999999999999999999999984 5
No 8
>cd00035 ChtBD1 Chitin binding domain, involved in recognition or binding of chitin subunits; fold analogous to hevein; occurs in plant and fungal proteins that bind N-acetylglucosamine, plant endochitinases, wound-induced proteins, and K.lactis killer toxin alpha subunit, occurs singly or multiply
Probab=98.46 E-value=8.7e-08 Score=63.70 Aligned_cols=29 Identities=69% Similarity=1.776 Sum_probs=27.3
Q ss_pred CCCCCcccccccccCCcccccCCcccCCCC
Q 023873 36 CAAGLCCSRWGFCGTGDDYCGTGCQQGPCN 65 (276)
Q Consensus 36 c~~~~ccs~~g~cg~~~~~c~~~cq~~~c~ 65 (276)
|+.+.|||++||||++.+||+.+||++ |+
T Consensus 11 C~~~~CCS~~G~CG~t~~~Cg~gcq~~-c~ 39 (40)
T cd00035 11 CPPGLCCSQFGYCGTTDDYCGRGCQSG-CW 39 (40)
T ss_pred CCCCccccccccccCCccccccccccc-cC
Confidence 888999999999999999999999997 75
No 9
>cd06918 ChtBD1_like Domain observed in several metazoan proteins. The pattern of conserved cysteine residues resembles that of chitin binding domains found in plants and fungi.
Probab=94.99 E-value=0.012 Score=41.11 Aligned_cols=18 Identities=44% Similarity=1.268 Sum_probs=16.9
Q ss_pred CCcccccccccCCccccc
Q 023873 39 GLCCSRWGFCGTGDDYCG 56 (276)
Q Consensus 39 ~~ccs~~g~cg~~~~~c~ 56 (276)
.+|||.+||||.+.+||.
T Consensus 27 ~pCCS~~gwCG~t~~hC~ 44 (51)
T cd06918 27 KPCCSNGGYCGSGSEHCD 44 (51)
T ss_pred CcccCCCceeCCCccccc
Confidence 499999999999999995
No 10
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=65.99 E-value=6 Score=42.82 Aligned_cols=50 Identities=14% Similarity=0.387 Sum_probs=36.0
Q ss_pred CCCccccchhhHHH-----HHhhhCCCCCCCcccccc--CcchhhhHHHHHHHhhhhhh
Q 023873 175 RGPIQLSWNFNYGP-----AGNSIGFDGLNAPETVAN--DPVISFKTALWYWTNHVQSV 226 (276)
Q Consensus 175 RG~iQLT~~~NY~~-----~g~~~g~dl~~~Pdlva~--d~~~a~~sA~wfW~~~~~~~ 226 (276)
||.+-+||||+=.+ |++.+..-|+ |.|+.+ .|.+..+-|+|||+..+.+.
T Consensus 1092 rG~ll~TGRy~EAr~iIlaFa~tlrHGLI--PNLLd~G~~~RyNcRDA~W~wl~~Iq~Y 1148 (1521)
T KOG3625|consen 1092 RGILLITGRYVEARNIILAFAGTLRHGLI--PNLLDEGIYARYNCRDAVWWWLQCIQDY 1148 (1521)
T ss_pred ccceEeecchHHHHHHHHHHHHHhhcccc--chhhhccccccccchHHHHHHHHHHHHH
Confidence 78999999998654 3344434444 666653 68899999999999865543
No 11
>PF15240 Pro-rich: Proline-rich
Probab=40.88 E-value=18 Score=31.77 Aligned_cols=9 Identities=33% Similarity=0.431 Sum_probs=5.0
Q ss_pred HHHHHHHHH
Q 023873 10 MQLLLFIAL 18 (276)
Q Consensus 10 ~~~~~~~~~ 18 (276)
||+|||.+|
T Consensus 1 MLlVLLSvA 9 (179)
T PF15240_consen 1 MLLVLLSVA 9 (179)
T ss_pred ChhHHHHHH
Confidence 556555554
No 12
>PF06607 Prokineticin: Prokineticin; InterPro: IPR023569 The prokineticin family includes prokinectin itself and related proteins such as BM8 and the AVIToxins. The suprachiasmatic nucleus (SCN) controls the circadian rhythm of physiological and behavioural processes in mammals. It has been shown that prokineticin 2 (PK2), a cysteine-rich secreted protein, functions as an output molecule from the SCN circadian clock. PK2 messenger RNA is rhythmically expressed in the SCN, and the phase of PK2 rhythm is responsive to light entrainment. Molecular and genetic studies have revealed that PK2 is a gene that is controlled by a circadian clock []. The prokinectin domain is found in the prokinectin family and the hainantoxins, where it comprises the whole length of the protein. This domain is also found at the C terminus of some members of the Dickkopf family.; PDB: 1IMT_A 2KRA_A.
Probab=40.28 E-value=13 Score=29.39 Aligned_cols=31 Identities=23% Similarity=0.612 Sum_probs=13.1
Q ss_pred cccccccccCC----CCCCCcccccccccCCccccc
Q 023873 25 MPRSVMAQNCG----CAAGLCCSRWGFCGTGDDYCG 56 (276)
Q Consensus 25 ~~~~~~~~~c~----c~~~~ccs~~g~cg~~~~~c~ 56 (276)
..+.+....|- |..+.||+.+-|=- +...|.
T Consensus 17 ~~~~vitg~C~~d~dCg~G~CCA~~~~~~-~~~vCk 51 (97)
T PF06607_consen 17 SDAAVITGACESDADCGPGTCCAVSNWRR-SLRVCK 51 (97)
T ss_dssp ------SSC-SSGGGT-TTEEECE-SS-T-T-ECCE
T ss_pred hceeEEeccccCcCCCCCCceeCcccccC-CCccee
Confidence 34455566773 88899999874432 334553
No 13
>PRK13722 lytic transglycosylase; Provisional
Probab=40.28 E-value=1e+02 Score=26.74 Aligned_cols=80 Identities=19% Similarity=0.360 Sum_probs=43.5
Q ss_pred CCCccccchhhHHHHHhhhCCCCCCCccccccCcchhhhHHHHHHHhhhhhhhccCccccceeccCccccCCCCchhHHH
Q 023873 175 RGPIQLSWNFNYGPAGNSIGFDGLNAPETVANDPVISFKTALWYWTNHVQSVMNQGFGATIRAINGALECDGGNPSTVQA 254 (276)
Q Consensus 175 RG~iQLT~~~NY~~~g~~~g~dl~~~Pdlva~d~~~a~~sA~wfW~~~~~~~~~~gf~~~t~iINGg~ec~~~~~~~~~~ 254 (276)
.|+|||. ........+ .|+. |+.+..||.+.+..+.||-...+... +..+ ...-.=|.|. +........
T Consensus 62 ~GLMQIn-~~~~~~l~~-~gi~----~~~ll~DPc~NI~~Gaw~L~~~~~~~-g~~w-~AvaaYNaG~---~~~~~~~~~ 130 (169)
T PRK13722 62 SGLMQVD-SQHFNELAR-YGIK----PEHLTTDPCMNIYTGAYYLAIAFKKW-GVSW-EAVGAYNAGF---RKTERQNQR 130 (169)
T ss_pred ecCCccc-HHHHHHHHH-cCCC----HHHHccCHHHHHHHHHHHHHHHHHHc-CCch-heeeecCCCC---CccccchHH
Confidence 6999986 222222323 3432 55555689999999999876643321 2222 2334456653 111223456
Q ss_pred HHHHHHHHHHH
Q 023873 255 RIRYFTEYCSQ 265 (276)
Q Consensus 255 R~~~y~~~~~~ 265 (276)
|..|-++..++
T Consensus 131 r~~Ya~kV~~~ 141 (169)
T PRK13722 131 RLAYASEVYRI 141 (169)
T ss_pred HHHHHHHHHHH
Confidence 66666655554
No 14
>PF11364 DUF3165: Protein of unknown function (DUF3165); InterPro: IPR021506 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=32.94 E-value=27 Score=26.66 Aligned_cols=22 Identities=23% Similarity=0.535 Sum_probs=15.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHH
Q 023873 1 MAPSSLKQSMQLLLFIALLSAA 22 (276)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (276)
|+|.|-|.+|-++.++..++++
T Consensus 17 ~aPksIr~Tln~i~~v~~~vlL 38 (81)
T PF11364_consen 17 MAPKSIRGTLNMIGLVGLVVLL 38 (81)
T ss_pred HCcHHHHhhhhHHHHHHHHHHH
Confidence 7899999887766655544433
No 15
>PF09447 Cnl2_NKP2: Cnl2/NKP2 family protein; InterPro: IPR018565 This entry includes the Cnl2 kinetochore protein [].
Probab=23.28 E-value=59 Score=23.96 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=18.8
Q ss_pred CCCcccccchhhHhhhhcccCc
Q 023873 72 DVSVADIVTPEFFNGILNQADA 93 (276)
Q Consensus 72 ~~sv~~iIT~~~fn~i~p~a~~ 93 (276)
.+++.++||-++|.++||+...
T Consensus 13 ~s~L~~iisl~qF~~LFPr~~~ 34 (67)
T PF09447_consen 13 PSSLPDIISLEQFRKLFPRRLR 34 (67)
T ss_pred cCccccccCHHHHHHHccccCC
Confidence 3589999999999999998543
No 16
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=22.64 E-value=26 Score=24.00 Aligned_cols=21 Identities=14% Similarity=0.042 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhcccccccc
Q 023873 12 LLLFIALLSAAAMMPRSVMAQ 32 (276)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~ 32 (276)
+++.+++++|++++.+.---|
T Consensus 5 V~~iilg~~ll~~LigiCwCQ 25 (49)
T PF05624_consen 5 VVLIILGALLLLLLIGICWCQ 25 (49)
T ss_pred EeHHHHHHHHHHHHHHHHHHh
Confidence 345555544444444443333
No 17
>PF01337 Barstar: Barstar (barnase inhibitor); InterPro: IPR000468 Barstar is a small single chain protein. Barnase is the extracellular ribonuclease IPR001887 from INTERPRO of Bacillus amyloliquefaciens, and barstar its specific intracellular inhibitor [, ]. Expression of barstar is necessary to counter the lethal effect of expressed active barnase. The structure of the barnase-barstar complex is known [].; PDB: 2CX6_A 1B2U_F 1A19_A 1X1U_F 1B27_E 1X1W_F 1BGS_E 1X1Y_D 1B3S_D 1B2S_D ....
Probab=21.83 E-value=38 Score=25.44 Aligned_cols=26 Identities=15% Similarity=0.400 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHHcCCC--CCCCCC
Q 023873 250 STVQARIRYFTEYCSQLGVS--TGDNLT 275 (276)
Q Consensus 250 ~~~~~R~~~y~~~~~~Lgv~--~g~nl~ 275 (276)
.++.++..+|+.+.+.|+.+ +|.|||
T Consensus 6 ~~i~~~~~~~~~l~~~l~fP~yfG~NlD 33 (90)
T PF01337_consen 6 RKIRDKEDFYDALAEALDFPDYFGRNLD 33 (90)
T ss_dssp CC-SSHHHHHHHHHHHTT--TTSSSSHH
T ss_pred CCCCCHHHHHHHHHHHcCCCchhcCCHH
Confidence 36789999999999999997 788875
No 18
>PRK15328 invasion protein IagB; Provisional
Probab=20.04 E-value=2.2e+02 Score=24.28 Aligned_cols=79 Identities=18% Similarity=0.282 Sum_probs=40.8
Q ss_pred ccCCCccccchhhHHHHHhhhCCCCCCCccccccCcchhhhHHHHHHHhhhhhhhccCccccceeccCccccCCCCchhH
Q 023873 173 YGRGPIQLSWNFNYGPAGNSIGFDGLNAPETVANDPVISFKTALWYWTNHVQSVMNQGFGATIRAINGALECDGGNPSTV 252 (276)
Q Consensus 173 ~GRG~iQLT~~~NY~~~g~~~g~dl~~~Pdlva~d~~~a~~sA~wfW~~~~~~~~~~gf~~~t~iINGg~ec~~~~~~~~ 252 (276)
+-.|+|||.- .+...+ +.+|+ ..+++ ..||...+..+.|+-...+.. -+..+ .....=|.|.. ....
T Consensus 59 ~d~GLMQIn~-~~~~~l-~~~gv---~~~~l-l~DPc~NI~~Ga~~L~~~~~~-~g~~~-~alaaYNaG~~-----~~~~ 125 (160)
T PRK15328 59 TDLGLMQINS-FHMKRL-KKMGI---SEKQL-LQDPCISVIVGASILSDMMKI-YGYSW-EAVGAYNAGTS-----PKRS 125 (160)
T ss_pred cccChhhcCH-HHHHHH-HHcCC---ChHHH-hcCHHHHHHHHHHHHHHHHHH-cCChH-HhhhhccCCCC-----CCCC
Confidence 3469999962 222223 23343 23444 448999999999986643322 12222 23344565531 1223
Q ss_pred HHHHHHHHHHHH
Q 023873 253 QARIRYFTEYCS 264 (276)
Q Consensus 253 ~~R~~~y~~~~~ 264 (276)
..|.+|.++..+
T Consensus 126 ~~~~~Y~~kV~~ 137 (160)
T PRK15328 126 DIRKRYAKKIWE 137 (160)
T ss_pred HHHHHHHHHHHH
Confidence 445566554443
Done!