BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023874
(276 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0WUA3|MENA_ARATH 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic
OS=Arabidopsis thaliana GN=ABC4 PE=1 SV=2
Length = 382
Score = 295 bits (756), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 140/205 (68%), Positives = 166/205 (80%)
Query: 42 LLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
L+GSRTGTL A L LG GL W S+ A N+RAI+LL A++CGY+YQCPPFRLSYQG
Sbjct: 161 LVGSRTGTLAAAITSLALGVSGLVWTSLNASNIRAILLLASAILCGYVYQCPPFRLSYQG 220
Query: 102 LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQV 161
LGEPLCFAAFGPFATTAFYLLLGS+ E L ++ VLS+S+LVG TTSLILFCSHFHQV
Sbjct: 221 LGEPLCFAAFGPFATTAFYLLLGSSSEMRHLPLSGRVLSSSVLVGFTTSLILFCSHFHQV 280
Query: 162 EGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGK 221
+GD VGK SPLVRLGTE+G+ VV+W + +LYS+L +GL+R LPL C +C +T P+G
Sbjct: 281 DGDLAVGKYSPLVRLGTEKGAFVVRWTIRLLYSMLLVLGLTRILPLPCTLMCFLTLPVGN 340
Query: 222 LVVSYVEENHKDKGKIFMAKYYCVR 246
LV SYVE++HKD GKIFMAKYYCVR
Sbjct: 341 LVSSYVEKHHKDNGKIFMAKYYCVR 365
>sp|P73962|MENA_SYNY3 Probable 1,4-dihydroxy-2-naphthoate octaprenyltransferase
OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=menA
PE=3 SV=1
Length = 307
Score = 129 bits (323), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 117/218 (53%), Gaps = 10/218 (4%)
Query: 42 LLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
L G+R + + L+ G +GL S A + + L+ A+ GY YQ PPFRL Y G
Sbjct: 92 LTGNRNLVFLISNFFLLAGVLGLMSMSWRAQDWTVLELIGVAIFLGYTYQGPPFRLGYLG 151
Query: 102 LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQV 161
LGE +C FGP A A Y + S + +L+ S+ VG++T++ILFCSHFHQV
Sbjct: 152 LGELICLITFGPLAIAAAYY-------SQSQSFSWNLLTPSVFVGISTAIILFCSHFHQV 204
Query: 162 EGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIG-LSRALPLSCIFLCAMTSPIG 220
E D GK SP+VRLGT+ GS V+ +V+ LY L+ AIG L P + + A + P
Sbjct: 205 EDDLAAGKKSPIVRLGTKLGSQVLTLSVVSLY-LITAIGVLCHQAPWQTLLIIA-SLPWA 262
Query: 221 KLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAG 258
++ +V + H ++ K+ V H G + AG
Sbjct: 263 VQLIRHVGQYHDQPEQVSNCKFIAVNLHFFSGMLMAAG 300
>sp|Q38833|CHLG_ARATH Chlorophyll synthase, chloroplastic OS=Arabidopsis thaliana GN=CHLG
PE=2 SV=1
Length = 387
Score = 37.7 bits (86), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 13/101 (12%)
Query: 88 YIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGS-TRENLCLSITATVLSASLLVG 146
YIY PP +L G G FA A Y+ L + L ++T V+ +LL
Sbjct: 223 YIYSAPPLKLKQNGW--------VGNFALGASYISLPWWAGQALFGTLTPDVVVLTLLYS 274
Query: 147 LTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKW 187
+ I + F VEGDR +G S V GTE KW
Sbjct: 275 IAGLGIAIVNDFKSVEGDRALGLQSLPVAFGTE----TAKW 311
>sp|P44739|MENA_HAEIN 1,4-dihydroxy-2-naphthoate octaprenyltransferase OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=menA PE=3 SV=1
Length = 308
Score = 34.7 bits (78), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 104 EPLCFAAFGPFATTAFYLLLG--STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQV 161
+P + G + F+ LLG T SI + ++ ++ GL S +L ++ +
Sbjct: 150 KPYGYMGLGDISVLVFFGLLGVGGTYYLQTHSIDSHIILPAIGSGLLASAVLNINNLRDI 209
Query: 162 EGDRNVGKMSPLVRLGTERGSV 183
E D GK + VRLG +G V
Sbjct: 210 EQDAKAGKNTLAVRLGAYKGRV 231
>sp|Q5W6H5|CHLG_ORYSJ Chlorophyll synthase, chloroplastic OS=Oryza sativa subsp. japonica
GN=CHLG PE=2 SV=1
Length = 376
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 13/101 (12%)
Query: 88 YIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYL-LLGSTRENLCLSITATVLSASLLVG 146
YIY PP +L G G FA A Y+ L + L ++T ++ + L
Sbjct: 212 YIYSAPPLKLKQNGW--------IGNFALGASYIGLPWWAGQALFGTLTPDIVVLTSLYS 263
Query: 147 LTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKW 187
+ I + F VEGDR +G S V G E KW
Sbjct: 264 IAGLGIAIVNDFKSVEGDRALGLQSLPVAFGME----TAKW 300
>sp|Q9M3W5|CHLG_AVESA Chlorophyll synthase, chloroplastic OS=Avena sativa GN=CHLG PE=1
SV=1
Length = 378
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 13/101 (12%)
Query: 88 YIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYL-LLGSTRENLCLSITATVLSASLLVG 146
YIY PP +L G G FA A Y+ L + L ++T ++ + L
Sbjct: 214 YIYSAPPLKLKQNGW--------IGNFALGASYIGLPWWAGQALFGTLTPDIVVLTCLYS 265
Query: 147 LTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKW 187
+ I + F +EGDR +G S V G E KW
Sbjct: 266 IAGLGIAIVNDFKSIEGDRTLGLQSLPVAFGME----TAKW 302
>sp|P65650|MENA_MYCTU Probable 1,4-dihydroxy-2-naphthoate octaprenyltransferase
OS=Mycobacterium tuberculosis GN=menA PE=3 SV=1
Length = 292
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 79 LLTCAVIC---GYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSIT 135
L+ IC ++Y Y G GE F FGP A +LG T+ L +
Sbjct: 115 LIAVGAICIAGAWLYTGGSKPYGYAGFGELAVFVFFGPVA------VLG-TQYTQALRVD 167
Query: 136 ATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTER 180
L+ ++ G + +L ++ + D K++ VRLG R
Sbjct: 168 WVGLAQAVATGALSCSVLVANNLRDIPTDARADKITLAVRLGDAR 212
>sp|P65651|MENA_MYCBO Probable 1,4-dihydroxy-2-naphthoate octaprenyltransferase
OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
GN=menA PE=3 SV=1
Length = 292
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 79 LLTCAVIC---GYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSIT 135
L+ IC ++Y Y G GE F FGP A +LG T+ L +
Sbjct: 115 LIAVGAICIAGAWLYTGGSKPYGYAGFGELAVFVFFGPVA------VLG-TQYTQALRVD 167
Query: 136 ATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTER 180
L+ ++ G + +L ++ + D K++ VRLG R
Sbjct: 168 WVGLAQAVATGALSCSVLVANNLRDIPTDARADKITLAVRLGDAR 212
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.143 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,306,554
Number of Sequences: 539616
Number of extensions: 3573375
Number of successful extensions: 9264
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 9254
Number of HSP's gapped (non-prelim): 19
length of query: 276
length of database: 191,569,459
effective HSP length: 116
effective length of query: 160
effective length of database: 128,974,003
effective search space: 20635840480
effective search space used: 20635840480
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 60 (27.7 bits)