Query 023874
Match_columns 276
No_of_seqs 166 out of 1176
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 14:14:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023874.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023874hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rqja_ a.128.1.1 (A:) Farnesy 26.7 61 0.0045 26.4 6.6 58 137-194 65-123 (299)
2 d1te7a_ b.122.1.7 (A:) Hypothe 19.9 18 0.0013 25.8 1.3 15 161-175 12-26 (103)
3 d1rtra_ a.128.1.1 (A:) Farnesy 15.0 85 0.0062 25.3 4.8 55 139-193 64-119 (290)
4 d1rtra_ a.128.1.1 (A:) Farnesy 14.5 13 0.00095 30.8 -0.8 31 153-183 214-255 (290)
5 d1ezfa_ a.128.1.2 (A:) Squalen 13.4 21 0.0015 30.2 0.3 24 151-174 173-196 (333)
6 d1rqja_ a.128.1.1 (A:) Farnesy 12.1 22 0.0016 29.4 -0.0 33 153-185 220-263 (299)
7 d2axti1 f.23.37.1 (I:1-35) Pho 6.8 1E+02 0.0075 17.3 1.5 12 18-29 10-21 (35)
8 d1v4ea_ a.128.1.1 (A:) Octopre 6.7 1.9E+02 0.014 23.0 3.9 56 137-193 54-109 (280)
9 d1iwga8 f.35.1.1 (A:513-566,A: 5.4 5.6E+02 0.041 19.0 7.3 11 29-39 8-18 (222)
10 d1ma1a1 a.2.11.1 (A:4-91) Fe s 5.3 98 0.0071 20.7 1.0 18 89-106 4-21 (88)
No 1
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=26.70 E-value=61 Score=26.41 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCChHh-hHhcCCcccceeechhhHHHHHHHHHHHHHH
Q 023874 137 TVLSASLLVGLTTSLILFCSHFHQVEG-DRNVGKMSPLVRLGTERGSVVVKWAVMILYS 194 (276)
Q Consensus 137 ~~ll~slp~~l~~~~ill~Nn~~D~e~-D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ayl 194 (276)
...-++..+=++=++.+.-.|++|.+. |.+-|+.|.-...|.+.|...=-.+...++-
T Consensus 65 ~~~~~A~aiEllH~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~ 123 (299)
T d1rqja_ 65 TLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFS 123 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHccchhhhhhhcccccccceeeeCcchhhhhcchHHHHHHH
Confidence 344456666677778888899999987 5899999999999998886554444444443
No 2
>d1te7a_ b.122.1.7 (A:) Hypothetical protein YqfB {Escherichia coli [TaxId: 562]}
Probab=19.87 E-value=18 Score=25.81 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=13.5
Q ss_pred hHhhHhcCCccccee
Q 023874 161 VEGDRNVGKMSPLVR 175 (276)
Q Consensus 161 ~e~D~~~Gk~TL~v~ 175 (276)
.|.|..+||+|..+|
T Consensus 12 fe~dIlsGkKTITIR 26 (103)
T d1te7a_ 12 FQDDILAGRKTITIR 26 (103)
T ss_dssp HHHHHHTCCCEEEEE
T ss_pred hhHHHhcCCceEEec
Confidence 589999999999887
No 3
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=15.01 E-value=85 Score=25.34 Aligned_cols=55 Identities=9% Similarity=0.160 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHhh-HhcCCcccceeechhhHHHHHHHHHHHHH
Q 023874 139 LSASLLVGLTTSLILFCSHFHQVEGD-RNVGKMSPLVRLGTERGSVVVKWAVMILY 193 (276)
Q Consensus 139 ll~slp~~l~~~~ill~Nn~~D~e~D-~~~Gk~TL~v~lG~~~a~~l~~~l~~~ay 193 (276)
+-+|..+=++=++.+.-.|+.|+++| .+-||.|.-...|.+.|...=-.+...++
T Consensus 64 ~~~A~avEllH~asLIHDDI~d~D~~~~RRg~pt~~~~~g~~~Ail~Gd~l~~~a~ 119 (290)
T d1rtra_ 64 MKSAIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAF 119 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchhhhhhhhhhhcchhhHHHhhhhHHHHcCcchhHHHH
Confidence 34566667888888888999998775 58899999999999877654333433333
No 4
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=14.47 E-value=13 Score=30.76 Aligned_cols=31 Identities=13% Similarity=0.075 Sum_probs=17.5
Q ss_pred HHhcCCCChH-----------hhHhcCCcccceeechhhHHH
Q 023874 153 LFCSHFHQVE-----------GDRNVGKMSPLVRLGTERGSV 183 (276)
Q Consensus 153 ll~Nn~~D~e-----------~D~~~Gk~TL~v~lG~~~a~~ 183 (276)
-+.+|+-|+. +|.+.||.|+|+.+|.+.+..
T Consensus 214 Qi~DD~lD~~g~~~~~GK~~g~Di~~gK~T~p~i~a~~~a~~ 255 (290)
T d1rtra_ 214 QIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAED 255 (290)
T ss_dssp HHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchHhhccCcccHhhcCCccHHHHHHHHHHHH
Confidence 4566766654 577889999999998877643
No 5
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.35 E-value=21 Score=30.15 Aligned_cols=24 Identities=8% Similarity=-0.064 Sum_probs=20.8
Q ss_pred HHHHhcCCCChHhhHhcCCcccce
Q 023874 151 LILFCSHFHQVEGDRNVGKMSPLV 174 (276)
Q Consensus 151 ~ill~Nn~~D~e~D~~~Gk~TL~v 174 (276)
+.-++|-+||+.+|.+.||.-+|.
T Consensus 173 AlQltNIlRDi~eD~~~gR~YlP~ 196 (333)
T d1ezfa_ 173 FLQKTNIIRDYLEDQQGGREFWPQ 196 (333)
T ss_dssp HHHHHHHHHTHHHHHHHTCCCSCH
T ss_pred HHHHHHHHHhhHHHHhCCcEECCH
Confidence 456788899999999999999985
No 6
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=12.11 E-value=22 Score=29.45 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=24.7
Q ss_pred HHhcCCCChH-----------hhHhcCCcccceeechhhHHHHH
Q 023874 153 LFCSHFHQVE-----------GDRNVGKMSPLVRLGTERGSVVV 185 (276)
Q Consensus 153 ll~Nn~~D~e-----------~D~~~Gk~TL~v~lG~~~a~~l~ 185 (276)
-+.+|+-|+. +|.+.||.|+|+.+|.+.+....
T Consensus 220 Qi~DD~lD~~~~~~~~GK~~g~Dl~egK~Tlp~i~~le~a~~~~ 263 (299)
T d1rqja_ 220 QVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKA 263 (299)
T ss_dssp HHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHH
T ss_pred HHHHHHHhhccchhhcCCchhhHHHCCChhHHHHHHHHHHHHHH
Confidence 4566666654 48888999999999998876543
No 7
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.84 E-value=1e+02 Score=17.26 Aligned_cols=12 Identities=8% Similarity=0.268 Sum_probs=10.5
Q ss_pred hhHHhhhhhhhc
Q 023874 18 ATFLLFCPSVLY 29 (276)
Q Consensus 18 ~~~~~f~~~~~~ 29 (276)
-+..||++.++|
T Consensus 10 ~vV~fFv~lFiF 21 (35)
T d2axti1 10 IVVTFFVLLFVF 21 (35)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 467899999999
No 8
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=6.67 E-value=1.9e+02 Score=22.98 Aligned_cols=56 Identities=11% Similarity=0.070 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccceeechhhHHHHHHHHHHHHH
Q 023874 137 TVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILY 193 (276)
Q Consensus 137 ~~ll~slp~~l~~~~ill~Nn~~D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~ay 193 (276)
..+-.+..+=++=++.+.-.|+-| ++|.+-|+.|.=...|.+.|...=-.+...++
T Consensus 54 ~~~~~AaaiEliH~asLIhDDi~D-~s~~RRG~pt~h~~~g~~~ail~gd~l~~~a~ 109 (280)
T d1v4ea_ 54 DAISSLAALELVHLASLLHDDVID-GARFRRGKETINFMYGDKAAVAAGDLVLVSAF 109 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhh-hcccccccchhhhccchhhhhhhHHHHHHhhh
Confidence 333344455566566666677766 55678899999999998887654444444443
No 9
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=5.43 E-value=5.6e+02 Score=18.99 Aligned_cols=11 Identities=27% Similarity=0.419 Sum_probs=6.7
Q ss_pred cccCCcceeee
Q 023874 29 YSKESHWLVIS 39 (276)
Q Consensus 29 ~~~~~~~~~~~ 39 (276)
|++++++|+..
T Consensus 8 f~~~t~~y~~~ 18 (222)
T d1iwga8 8 FEKSTHHYTDS 18 (222)
T ss_dssp HHHHHTHHHHH
T ss_pred HHhhhHHHHHH
Confidence 56667777543
No 10
>d1ma1a1 a.2.11.1 (A:4-91) Fe superoxide dismutase (FeSOD) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=5.30 E-value=98 Score=20.72 Aligned_cols=18 Identities=22% Similarity=0.578 Sum_probs=14.3
Q ss_pred eeccCCcccccccchHHH
Q 023874 89 IYQCPPFRLSYQGLGEPL 106 (276)
Q Consensus 89 ~YS~~P~~l~y~glGE~~ 106 (276)
.|+-||+|+.|.+|-...
T Consensus 4 ~f~Lp~LPY~~~aLeP~i 21 (88)
T d1ma1a1 4 FYELPELPYPYDALEPHI 21 (88)
T ss_dssp CCCCCCCSSCTTTTTTTS
T ss_pred cccCCCCCCCcccccccC
Confidence 588999999999985443
Done!