Query 023875
Match_columns 276
No_of_seqs 283 out of 2200
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 07:17:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023875.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023875hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03143 nudix hydrolase; Prov 100.0 8.3E-49 1.8E-53 360.9 21.7 258 5-275 2-290 (291)
2 PRK15009 GDP-mannose pyrophosp 100.0 7.7E-30 1.7E-34 223.0 19.6 162 76-262 7-183 (191)
3 PRK10729 nudF ADP-ribose pyrop 100.0 1.1E-29 2.4E-34 223.8 20.3 168 72-264 7-190 (202)
4 PRK11762 nudE adenosine nucleo 100.0 4.4E-28 9.6E-33 210.2 20.2 163 78-266 13-180 (185)
5 TIGR00052 nudix-type nucleosid 100.0 1.5E-27 3.2E-32 207.6 17.9 165 75-264 5-184 (185)
6 KOG3041 Nucleoside diphosphate 99.9 1.3E-25 2.9E-30 193.4 15.9 187 49-255 8-199 (225)
7 cd03424 ADPRase_NUDT5 ADP-ribo 99.8 4.1E-18 8.9E-23 139.4 13.6 118 116-255 3-120 (137)
8 cd04700 DR1025_like DR1025 fro 99.7 1E-16 2.2E-21 133.2 12.2 120 115-257 13-132 (142)
9 cd03672 Dcp2p mRNA decapping e 99.7 6.7E-16 1.5E-20 129.2 12.1 111 117-253 3-114 (145)
10 PRK09438 nudB dihydroneopterin 99.7 7E-16 1.5E-20 128.3 11.9 128 115-261 7-140 (148)
11 cd04683 Nudix_Hydrolase_24 Mem 99.7 8.6E-16 1.9E-20 122.7 11.4 114 118-252 3-116 (120)
12 TIGR02705 nudix_YtkD nucleosid 99.6 4.5E-15 9.8E-20 126.0 13.5 109 114-255 23-132 (156)
13 cd04691 Nudix_Hydrolase_32 Mem 99.6 3.3E-15 7.1E-20 119.9 11.1 100 131-256 14-114 (117)
14 PRK10707 putative NUDIX hydrol 99.6 3.4E-15 7.4E-20 130.5 10.6 114 115-251 30-147 (190)
15 cd04679 Nudix_Hydrolase_20 Mem 99.6 7.8E-15 1.7E-19 118.2 11.7 114 117-252 4-117 (125)
16 cd03671 Ap4A_hydrolase_plant_l 99.6 1.1E-14 2.5E-19 121.2 12.9 121 115-253 3-134 (147)
17 PF00293 NUDIX: NUDIX domain; 99.6 5.3E-15 1.2E-19 118.7 10.4 119 117-256 4-125 (134)
18 cd04684 Nudix_Hydrolase_25 Con 99.6 1.6E-14 3.4E-19 115.8 12.8 121 118-259 3-126 (128)
19 cd03673 Ap6A_hydrolase Diadeno 99.6 1.8E-14 3.9E-19 115.9 11.8 109 118-252 4-118 (131)
20 cd04680 Nudix_Hydrolase_21 Mem 99.6 1.1E-14 2.4E-19 115.8 10.1 108 118-252 3-110 (120)
21 PRK00714 RNA pyrophosphohydrol 99.6 7.4E-14 1.6E-18 118.1 14.2 121 115-252 8-137 (156)
22 cd04681 Nudix_Hydrolase_22 Mem 99.6 3E-14 6.5E-19 115.3 11.3 110 117-248 3-113 (130)
23 cd04673 Nudix_Hydrolase_15 Mem 99.6 3.4E-14 7.3E-19 113.1 11.4 110 118-251 3-115 (122)
24 cd03675 Nudix_Hydrolase_2 Cont 99.6 9.4E-14 2E-18 113.1 14.1 110 118-252 3-113 (134)
25 cd04669 Nudix_Hydrolase_11 Mem 99.5 4.9E-14 1.1E-18 113.7 10.7 113 117-250 2-114 (121)
26 cd04682 Nudix_Hydrolase_23 Mem 99.5 5E-14 1.1E-18 113.3 10.0 111 118-251 3-115 (122)
27 cd04664 Nudix_Hydrolase_7 Memb 99.5 4.9E-14 1.1E-18 114.2 9.5 116 117-252 3-120 (129)
28 cd04693 Nudix_Hydrolase_34 Mem 99.5 2.3E-14 4.9E-19 116.0 7.5 113 118-256 3-119 (127)
29 cd03427 MTH1 MutT homolog-1 (M 99.5 1.1E-13 2.4E-18 112.9 11.2 106 121-251 6-112 (137)
30 cd04666 Nudix_Hydrolase_9 Memb 99.5 1.4E-13 3E-18 111.9 11.6 97 131-252 18-117 (122)
31 cd04697 Nudix_Hydrolase_38 Mem 99.5 6.2E-14 1.3E-18 113.8 9.2 108 118-252 3-114 (126)
32 cd04692 Nudix_Hydrolase_33 Mem 99.5 9E-14 2E-18 115.3 9.7 116 118-252 5-129 (144)
33 cd03429 NADH_pyrophosphatase N 99.5 1.6E-13 3.4E-18 112.4 10.8 105 118-250 3-107 (131)
34 cd03426 CoAse Coenzyme A pyrop 99.5 1.3E-13 2.8E-18 116.5 10.5 89 141-250 30-118 (157)
35 cd04670 Nudix_Hydrolase_12 Mem 99.5 1.4E-13 2.9E-18 111.3 10.1 111 117-251 4-114 (127)
36 cd04696 Nudix_Hydrolase_37 Mem 99.5 2.3E-13 5.1E-18 109.7 11.2 109 117-251 4-115 (125)
37 cd04671 Nudix_Hydrolase_13 Mem 99.5 3.1E-13 6.7E-18 109.8 11.7 110 118-252 3-112 (123)
38 cd03676 Nudix_hydrolase_3 Memb 99.5 1.6E-13 3.5E-18 118.2 10.5 112 142-270 63-180 (180)
39 cd04695 Nudix_Hydrolase_36 Mem 99.5 2.2E-13 4.8E-18 111.1 10.6 112 118-252 5-116 (131)
40 cd04511 Nudix_Hydrolase_4 Memb 99.5 2.5E-13 5.4E-18 110.7 10.6 102 118-248 16-117 (130)
41 cd04687 Nudix_Hydrolase_28 Mem 99.5 7.7E-13 1.7E-17 107.1 13.3 114 118-251 4-122 (128)
42 PRK15472 nucleoside triphospha 99.5 6.3E-13 1.4E-17 109.6 12.6 98 142-252 30-127 (141)
43 PRK00241 nudC NADH pyrophospha 99.5 4.7E-13 1E-17 122.1 12.5 110 116-254 133-242 (256)
44 cd03430 GDPMH GDP-mannose glyc 99.5 6.1E-13 1.3E-17 110.9 12.1 115 118-252 15-134 (144)
45 cd03428 Ap4A_hydrolase_human_l 99.5 5.3E-13 1.2E-17 107.8 11.1 93 143-255 27-120 (130)
46 PRK15393 NUDIX hydrolase YfcD; 99.5 6.3E-13 1.4E-17 115.0 12.2 108 117-251 39-150 (180)
47 cd04688 Nudix_Hydrolase_29 Mem 99.5 7.2E-13 1.6E-17 106.9 11.6 96 142-250 22-118 (126)
48 cd04689 Nudix_Hydrolase_30 Mem 99.5 1E-12 2.2E-17 105.9 12.1 89 143-248 23-112 (125)
49 cd04667 Nudix_Hydrolase_10 Mem 99.5 6.1E-13 1.3E-17 105.4 10.3 101 118-252 3-103 (112)
50 cd03674 Nudix_Hydrolase_1 Memb 99.4 6.4E-13 1.4E-17 109.5 10.4 113 117-251 4-124 (138)
51 PLN02325 nudix hydrolase 99.4 1.1E-12 2.4E-17 109.4 11.9 114 118-251 12-126 (144)
52 cd04677 Nudix_Hydrolase_18 Mem 99.4 1.1E-12 2.3E-17 106.1 10.9 114 117-252 9-124 (132)
53 PRK15434 GDP-mannose mannosyl 99.4 1.4E-12 3E-17 111.1 11.4 91 141-251 41-138 (159)
54 cd04672 Nudix_Hydrolase_14 Mem 99.4 1.7E-12 3.7E-17 104.5 11.1 109 118-252 5-114 (123)
55 cd04686 Nudix_Hydrolase_27 Mem 99.4 1.5E-12 3.2E-17 106.5 9.7 110 118-250 3-119 (131)
56 cd04690 Nudix_Hydrolase_31 Mem 99.4 2.3E-12 5E-17 102.4 10.5 107 118-249 3-109 (118)
57 cd04699 Nudix_Hydrolase_39 Mem 99.4 1.7E-12 3.8E-17 104.0 9.4 111 118-251 4-115 (129)
58 cd04676 Nudix_Hydrolase_17 Mem 99.4 2.7E-12 5.8E-17 102.4 9.9 116 117-252 4-119 (129)
59 cd02885 IPP_Isomerase Isopente 99.4 3.7E-12 8.1E-17 108.3 10.0 117 117-254 32-152 (165)
60 cd04665 Nudix_Hydrolase_8 Memb 99.4 6.8E-12 1.5E-16 101.8 10.9 101 117-247 2-102 (118)
61 cd04678 Nudix_Hydrolase_19 Mem 99.4 7.9E-12 1.7E-16 101.0 11.1 113 117-250 4-117 (129)
62 PRK03759 isopentenyl-diphospha 99.3 8.5E-12 1.8E-16 108.1 11.1 116 117-254 36-156 (184)
63 cd04694 Nudix_Hydrolase_35 Mem 99.3 9.3E-12 2E-16 104.1 10.7 124 117-252 3-133 (143)
64 cd04663 Nudix_Hydrolase_6 Memb 99.3 1.9E-11 4.2E-16 100.4 11.5 99 133-250 16-116 (126)
65 cd04662 Nudix_Hydrolase_5 Memb 99.3 1.9E-11 4.1E-16 100.3 10.9 89 142-244 32-126 (126)
66 PRK10546 pyrimidine (deoxy)nuc 99.3 4.1E-11 8.9E-16 97.4 12.3 86 142-252 29-114 (135)
67 cd03425 MutT_pyrophosphohydrol 99.3 4.8E-11 1E-15 94.2 11.6 103 123-251 9-111 (124)
68 cd04661 MRP_L46 Mitochondrial 99.3 2.3E-11 5.1E-16 99.7 9.8 92 142-252 25-122 (132)
69 cd02883 Nudix_Hydrolase Nudix 99.3 4.5E-11 9.8E-16 93.3 10.4 109 118-250 3-112 (123)
70 COG1051 ADP-ribose pyrophospha 99.3 5.6E-11 1.2E-15 99.7 11.4 110 117-252 12-124 (145)
71 TIGR00586 mutt mutator mutT pr 99.3 7.7E-11 1.7E-15 94.6 11.7 103 123-251 12-114 (128)
72 TIGR02150 IPP_isom_1 isopenten 99.3 3.5E-11 7.6E-16 101.8 9.8 115 117-255 29-147 (158)
73 cd04685 Nudix_Hydrolase_26 Mem 99.2 6.4E-11 1.4E-15 97.7 10.1 118 117-250 2-123 (133)
74 PRK10776 nucleoside triphospha 99.2 2.3E-10 5E-15 91.5 11.8 84 142-250 30-113 (129)
75 PRK05379 bifunctional nicotina 99.1 4.2E-10 9.1E-15 106.6 12.7 102 132-250 218-322 (340)
76 cd04674 Nudix_Hydrolase_16 Mem 99.1 6.6E-10 1.4E-14 90.2 11.3 62 117-183 7-68 (118)
77 PLN02709 nudix hydrolase 99.0 2.4E-09 5.3E-14 95.7 10.1 90 142-250 66-155 (222)
78 PRK08999 hypothetical protein; 99.0 3.3E-09 7.1E-14 98.6 10.7 102 123-250 13-114 (312)
79 COG2816 NPY1 NTP pyrophosphohy 98.9 1.3E-09 2.9E-14 99.9 5.9 107 117-252 146-252 (279)
80 COG0494 MutT NTP pyrophosphohy 98.9 1.5E-08 3.3E-13 80.3 10.8 41 143-184 36-77 (161)
81 KOG3084 NADH pyrophosphatase I 98.9 2.2E-10 4.9E-15 105.7 -0.0 112 116-252 188-300 (345)
82 KOG4432 Uncharacterized NUDIX 98.9 6.1E-09 1.3E-13 95.6 8.6 124 115-253 229-379 (405)
83 cd03670 ADPRase_NUDT9 ADP-ribo 98.9 4.2E-08 9.1E-13 85.7 12.4 32 143-175 60-91 (186)
84 PLN02791 Nudix hydrolase homol 98.7 4.6E-08 9.9E-13 101.0 9.0 120 117-252 34-160 (770)
85 PLN02552 isopentenyl-diphospha 98.7 8.1E-08 1.8E-12 87.4 9.1 123 117-252 58-205 (247)
86 KOG2839 Diadenosine and diphos 98.7 7.5E-08 1.6E-12 80.1 7.2 122 118-260 12-135 (145)
87 KOG4432 Uncharacterized NUDIX 98.6 2.1E-07 4.5E-12 85.7 8.0 89 116-214 27-140 (405)
88 KOG3069 Peroxisomal NUDIX hydr 98.4 9.8E-07 2.1E-11 78.9 8.1 95 136-250 69-163 (246)
89 COG4119 Predicted NTP pyrophos 98.3 3E-06 6.5E-11 69.3 7.0 97 142-252 35-137 (161)
90 PLN02839 nudix hydrolase 98.2 2.4E-05 5.2E-10 74.6 12.2 177 78-273 165-353 (372)
91 KOG0648 Predicted NUDIX hydrol 97.7 1.5E-05 3.2E-10 73.9 2.5 98 136-252 136-233 (295)
92 COG1443 Idi Isopentenyldiphosp 97.2 0.0007 1.5E-08 58.3 6.0 89 148-253 67-156 (185)
93 cd03431 DNA_Glycosylase_C DNA 97.1 0.0061 1.3E-07 47.4 9.6 36 137-173 21-58 (118)
94 KOG4195 Transient receptor pot 96.5 0.002 4.4E-08 57.5 3.3 38 132-172 141-178 (275)
95 COG4112 Predicted phosphoester 93.7 0.41 8.8E-06 41.2 8.0 91 149-260 97-197 (203)
96 KOG2937 Decapping enzyme compl 93.7 0.021 4.6E-07 53.8 0.4 85 144-249 107-191 (348)
97 KOG0142 Isopentenyl pyrophosph 93.1 0.12 2.7E-06 45.7 4.1 76 157-252 103-185 (225)
98 PF14815 NUDIX_4: NUDIX domain 88.8 0.92 2E-05 35.5 5.0 87 137-251 16-104 (114)
99 KOG4313 Thiamine pyrophosphoki 78.6 1.4 3E-05 40.4 2.1 108 146-271 168-281 (306)
100 PF13869 NUDIX_2: Nucleotide h 74.6 14 0.0003 32.5 7.1 104 144-260 69-181 (188)
101 PLN03143 nudix hydrolase; Prov 58.6 30 0.00066 32.4 6.5 34 85-123 103-136 (291)
102 KOG1689 mRNA cleavage factor I 49.8 20 0.00043 31.2 3.4 31 141-172 92-122 (221)
103 PF03487 IL13: Interleukin-13; 40.8 26 0.00056 23.2 2.1 24 147-171 13-36 (43)
104 PF14443 DBC1: DBC1 35.6 91 0.002 25.7 5.1 36 141-176 24-59 (126)
105 COG1724 Predicted RNA binding 24.2 1.1E+02 0.0025 22.3 3.4 36 134-174 31-66 (66)
106 KOG4548 Mitochondrial ribosoma 23.3 3.4E+02 0.0075 25.1 7.0 33 143-176 152-185 (263)
No 1
>PLN03143 nudix hydrolase; Provisional
Probab=100.00 E-value=8.3e-49 Score=360.92 Aligned_cols=258 Identities=75% Similarity=1.132 Sum_probs=219.3
Q ss_pred ccccccceeecCCCCcccceecccccceeeeecCCCCCCCCceeeEEeCCCCCCCeeEEcCCCCChhhhhhcccceeeee
Q 023875 5 FYTLPKRLTVSPSPPLLHFNYRSSRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQ 84 (276)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~~ 84 (276)
||.||+|..+.|++ ...++++|+++++ ++++||++|++++.+|+|++++|+|++|+++++++++|+.
T Consensus 2 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (291)
T PLN03143 2 FTLLPSRPLALPSR-----------MAHKEASSSSSSS--PLTHSITLPGQPGQPVLVVAAPGISSSDFRKAIDSSLFRQ 68 (291)
T ss_pred CccCCCcccccCCC-----------cceehhccCCCCC--CceeEEEccCCCCCceeEecCCCCCHHHHHhHhcChHHHH
Confidence 45666665555544 1333444555444 7999999999889999999999999999999999999999
Q ss_pred ceEEEEEEEEEeCCCcEEEEEEEEeeeeecCCEEEEEEEecceee-------------------------------eccC
Q 023875 85 WLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFC-------------------------------KETG 133 (276)
Q Consensus 85 ~~~~l~~~~~~~~~G~~~~~~v~~~~v~~~g~~V~vl~~~~d~~~-------------------------------~~~~ 133 (276)
|+.+++.+..++.++++.+|.|.+|+||+||+++||+++..|... +.++
T Consensus 69 w~~~~~~~~~~~~~~~~~~~~~~~~~vd~fg~~~gflkv~~d~~~l~~G~~~~~~v~~rg~aVaVL~~l~~~ge~~VlLV 148 (291)
T PLN03143 69 WLKNLQSESGILAYGSMSLKQVLIQGVDMFGKRIGFLKFKADIIDKETGQKVPGIVFARGPAVAVLILLESEGETYAVLT 148 (291)
T ss_pred HHHHhhhccccccCCCceeEEEEEEEEecccCceeEEEEEEEEEECCCCCEeeEEEEEcCCeEEEEEEEeCCCCEEEEEE
Confidence 999999999999999999999999999999999999888755421 1356
Q ss_pred eeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeecCCCccCeEEEEEEEEE
Q 023875 134 QKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRG 213 (276)
Q Consensus 134 rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~spg~~~e~i~lfla~~ 213 (276)
+|||+|++.+.||||||++|+++|++++||+||++|||||.+..+++..++.+.++..+..+|++||++++.+++|+++.
T Consensus 149 rQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~~v~pspG~~dE~i~Lfla~~ 228 (291)
T PLN03143 149 EQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGCRMFPSPGGCDEEISLFLYRG 228 (291)
T ss_pred EeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCceEEecCCccCCeEEEEEEcc
Confidence 78999999999999999999754899999999999999999876688888755544445579999999999999999998
Q ss_pred eehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcCChhHHHHHHHHHHHHhCCCCCCC
Q 023875 214 RVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIALYEMASKEELLPSR 275 (276)
Q Consensus 214 ~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~d~ktl~al~l~~~l~~~g~l~~~ 275 (276)
.++...+..++++.++..+++|.|++.|++++++|++++|+|+++|+++|+.++++|+||++
T Consensus 229 ~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~aD~ktl~al~l~~~~k~~g~~~~~ 290 (291)
T PLN03143 229 HVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTADAKVLMAIALYEMAKREGLLPSS 290 (291)
T ss_pred ccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCC
Confidence 87766666566655566789999999999999999999999999999999999999999986
No 2
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.97 E-value=7.7e-30 Score=222.97 Aligned_cols=162 Identities=21% Similarity=0.271 Sum_probs=132.8
Q ss_pred cccceeeeeceEEEEEEE--EEeCCCcE--EEEEEEEeeeeecCCEEEEEEEecceeeeccCeeeeeCC------CCeEE
Q 023875 76 AVESTLFKQWLKNLQSET--GILANGDM--LLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVRVPT------GRVIL 145 (276)
Q Consensus 76 ~~~~~~f~~~~~~l~~~~--~~~~~G~~--~~~~v~~~~v~~~g~~V~vl~~~~d~~~~~~~rq~R~~~------g~~~w 145 (276)
+++..+|++.|++++++. +.+|||.. ..|+++.+ +++|+||+++.+...+.++||||+|+ +++.|
T Consensus 7 ~~~~~~~~~~~~~v~~~~~~~~~pdG~~~~~~r~vv~~-----~~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~l 81 (191)
T PRK15009 7 LIKDKILSDNYFTLHNITYDLTRKDGEVIRHKREVYDR-----GNGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLI 81 (191)
T ss_pred EEEEEEEeCCeEEEEEEEEEEECCCCCccceEEEEEEE-----CCEEEEEEEECCCCEEEEEEcccccccccCCCCceEE
Confidence 457999999999999977 46799984 45677765 78999999986432236999999999 89999
Q ss_pred EeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeecCCCccCeEEEEEEEEEeehhhHHHHhcC
Q 023875 146 ELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQG 225 (276)
Q Consensus 146 ElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~spg~~~e~i~lfla~~~~~~~~i~~~~g 225 (276)
|||||.+|+ +++++||+|||+|||||.+. ++..++ .+|++||++++.+|+|+++...... .+
T Consensus 82 ElPAG~vd~--~~p~~aA~REL~EETGy~a~--~~~~l~---------~~~~spG~s~e~~~lf~a~~~~~~~-----~~ 143 (191)
T PRK15009 82 ETCAGLLDN--DEPEVCIRKEAIEETGYEVG--EVRKLF---------ELYMSPGGVTELIHFFIAEYSDSQR-----AN 143 (191)
T ss_pred EEeccccCC--CCHHHHHHHHHHHhhCCccc--eEEEee---------EEEcCCcccCcEEEEEEEEECchhc-----cc
Confidence 999999995 46999999999999999996 799987 4999999999999999998642211 01
Q ss_pred CCCCCCCCCceEEEEEEchhhHhhhcC-----ChhHHHHHHH
Q 023875 226 KETGLRDHGELIKVRVVPYRELWRTTP-----DAKVLTAIAL 262 (276)
Q Consensus 226 ~~~g~~d~~E~i~v~wv~leel~~~i~-----d~ktl~al~l 262 (276)
.+..+++|.|++.|+|++++.+++. |+++++|+.+
T Consensus 144 --~~~~de~E~iev~~~~~~e~~~~i~~G~i~da~ti~al~~ 183 (191)
T PRK15009 144 --AGGGVEDEDIEVLELPFSQALEMIKTGEIRDGKTVLLLNY 183 (191)
T ss_pred --CCCCCCCceEEEEEEcHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 1124688999999999999999974 8888888754
No 3
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.97 E-value=1.1e-29 Score=223.80 Aligned_cols=168 Identities=22% Similarity=0.303 Sum_probs=134.2
Q ss_pred hhhhcccceeeeeceEEEEEEEE--EeCCCc---EEEEEEEEeeeeecCCEEEEEEEecc-eeeeccCeeeeeCCC----
Q 023875 72 DFRCAVESTLFKQWLKNLQSETG--ILANGD---MLLKQVLIQGVDMFGKRIGFLKFKAD-IFCKETGQKVRVPTG---- 141 (276)
Q Consensus 72 ~~~~~~~~~~f~~~~~~l~~~~~--~~~~G~---~~~~~v~~~~v~~~g~~V~vl~~~~d-~~~~~~~rq~R~~~g---- 141 (276)
+.+.+.+..+|++ |++++.+.+ .++||. ...|+++.+ +++|+||+++.+ ..+ .++||||+|++
T Consensus 7 ~~~~~~~~~v~~~-~~~v~~~~~~~~~~~G~~~~~~~~~vv~~-----~~~V~il~~~~~~~~v-lLvrQyR~~~~~~~~ 79 (202)
T PRK10729 7 DVEIIARETLYRG-FFSLDLYRFRHRLFNGEMSGEVRREIFER-----GHAAVLLPFDPVRDEV-VLIEQIRIAAYDTSE 79 (202)
T ss_pred ceEEEEEEEEEcC-eEEEEEEEEEEEecCCccccEEeEEEEEc-----CCeEEEEEEECCCCEE-EEEEeeecccccCCC
Confidence 4444557999998 566765544 458987 566777765 789999999865 454 69999999995
Q ss_pred -CeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeecCCCccCeEEEEEEEEEeehhhHH
Q 023875 142 -RVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEII 220 (276)
Q Consensus 142 -~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~spg~~~e~i~lfla~~~~~~~~i 220 (276)
.++||+|||++|+| |++.+||+|||.|||||.+. ++..++ .+|++||++++.+|+|+++......
T Consensus 80 ~~~~lE~PAG~vd~g-E~p~~aA~REL~EETGy~a~--~~~~l~---------~~~~spg~~~e~~~~fla~~~~~~~-- 145 (202)
T PRK10729 80 TPWLLEMVAGMIEEG-ESVEDVARREAIEEAGLIVG--RTKPVL---------SYLASPGGTSERSSIMVGEVDATTA-- 145 (202)
T ss_pred CCeEEEccceEcCCC-CCHHHHHHHHHHHHhCceee--EEEEEE---------EEEcCCCcCceEEEEEEEEEcchhc--
Confidence 48999999999998 99999999999999999986 788887 4999999999999999998532211
Q ss_pred HHhcCCCCCCCCCCceEEEEEEchhhHhhhcC-----ChhHHHHHHHHH
Q 023875 221 MQLQGKETGLRDHGELIKVRVVPYRELWRTTP-----DAKVLTAIALYE 264 (276)
Q Consensus 221 ~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~-----d~ktl~al~l~~ 264 (276)
....+..+++|.|++.|+|++++.+++. |+++++|+.++.
T Consensus 146 ----~~~~~~~de~E~i~v~~~~~~e~~~~~~~G~i~d~~ti~al~~~~ 190 (202)
T PRK10729 146 ----SGIHGLADENEDIRVHVVSREQAYQWVEEGKIDNAASVIALQWLQ 190 (202)
T ss_pred ----ccCCCCCCCCCceEEEEEcHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 1112346889999999999999999875 889998876543
No 4
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.96 E-value=4.4e-28 Score=210.23 Aligned_cols=163 Identities=18% Similarity=0.133 Sum_probs=137.5
Q ss_pred cceeeeeceEEEEEEEEEeCCCcEEEEEEEEeeeeecCCEEEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCC
Q 023875 78 ESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKG 157 (276)
Q Consensus 78 ~~~~f~~~~~~l~~~~~~~~~G~~~~~~v~~~~v~~~g~~V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~E 157 (276)
+..+|+++|++|+...++++||....|+++... .+++|+|++++.+..+ .++||||++.+.+.||||||.+|+| |
T Consensus 13 ~~~v~~~~~~~v~~~~~~~~~G~~~~~~~v~~~---~~~~v~v~~~~~~~~v-lLvrq~r~~~~~~~~elPaG~ve~g-E 87 (185)
T PRK11762 13 RETVAKSRLFRVESVDLEFSNGVERVYERMRPS---GRGAVMIVPILDDDTL-LLIREYAAGTERYELGFPKGLIDPG-E 87 (185)
T ss_pred EEEEEeCCEEEEEEEEEEcCCCCEEEEEEEecC---CCCEEEEEEEeCCCEE-EEEEeecCCCCCcEEEccceeCCCC-C
Confidence 699999999999999999999988777775421 1357999999877665 5999999999999999999999998 9
Q ss_pred CHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeecCCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceE
Q 023875 158 DFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELI 237 (276)
Q Consensus 158 s~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i 237 (276)
++++||+||++||||+.+. .+..++. ++++++.+++.+++|++...... . ...++.|.+
T Consensus 88 ~~~~aA~REl~EEtG~~~~--~l~~l~~---------~~~~~~~~~~~~~~f~a~~~~~~--------~--~~~~e~E~i 146 (185)
T PRK11762 88 TPLEAANRELKEEVGFGAR--QLTFLKE---------LSLAPSYFSSKMNIVLAEDLYPE--------R--LEGDEPEPL 146 (185)
T ss_pred CHHHHHHHHHHHHHCCCCc--ceEEEEE---------EecCCCccCcEEEEEEEEccccc--------c--CCCCCCcee
Confidence 9999999999999999986 7888874 88899999999999999754221 1 134788999
Q ss_pred EEEEEchhhHhhhcC-----ChhHHHHHHHHHHH
Q 023875 238 KVRVVPYRELWRTTP-----DAKVLTAIALYEMA 266 (276)
Q Consensus 238 ~v~wv~leel~~~i~-----d~ktl~al~l~~~l 266 (276)
++.|+|++++.+++. |+++++|+.++..+
T Consensus 147 ~~~~~~~~e~~~~~~~g~i~d~~ti~al~~~~~~ 180 (185)
T PRK11762 147 EVVRWPLADLDELLARPDFSEARSVAALFLAREW 180 (185)
T ss_pred EEEEEcHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence 999999999998874 88899888766433
No 5
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.96 E-value=1.5e-27 Score=207.56 Aligned_cols=165 Identities=21% Similarity=0.299 Sum_probs=131.6
Q ss_pred hcccceeeeeceEEEEEEE-EE-eCCC--cEEEEEEEEeeeeecCCEEEEEEEecc-eeeeccCeeeeeCC-----CCeE
Q 023875 75 CAVESTLFKQWLKNLQSET-GI-LANG--DMLLKQVLIQGVDMFGKRIGFLKFKAD-IFCKETGQKVRVPT-----GRVI 144 (276)
Q Consensus 75 ~~~~~~~f~~~~~~l~~~~-~~-~~~G--~~~~~~v~~~~v~~~g~~V~vl~~~~d-~~~~~~~rq~R~~~-----g~~~ 144 (276)
.+.+..+|+++|++++.+. .+ .+|| ....|+++.+ +++|+||+++.+ ..+ .+++|||+++ +.+.
T Consensus 5 ~l~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~-----~~~v~vl~~~~~~~~v-lLvrq~R~~~~~~~~~~~~ 78 (185)
T TIGR00052 5 IIIKDTLYSGFFSLLHNIFYHRLFKGGESIRVTREIYDR-----GNAAAVLLYDPKKDTV-VLIEQFRIAAYVNGEEPWL 78 (185)
T ss_pred EEEEEEEecCCcEEEEEEEEEEeeCCCCCceEEEEEEEc-----CCeEEEEEEECCCCEE-EEEECceeeeeecCCcceE
Confidence 3447999999999998644 44 4566 4667777765 789999999764 344 6999999998 6789
Q ss_pred EEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeecCCCccCeEEEEEEEEEeehhhHHHHhc
Q 023875 145 LELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQ 224 (276)
Q Consensus 145 wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~spg~~~e~i~lfla~~~~~~~~i~~~~ 224 (276)
||||||++|+| |++++||+|||+||||+.+. .+..++ .+|+++|.+++.+++|+++...... .
T Consensus 79 lelPaG~ve~g-E~~~~aA~REl~EEtG~~~~--~~~~~~---------~~~~~~g~~~~~~~~f~a~~~~~~~-----~ 141 (185)
T TIGR00052 79 LELSAGMVEKG-ESPEDVARREAIEEAGYQVK--NLRKLL---------SFYSSPGGVTELIHLFIAEVDDNQA-----A 141 (185)
T ss_pred EEECcEecCCC-CCHHHHHHHHccccccceec--ceEEEE---------EEEcCCCCCcEEEEEEEEEEchhhc-----C
Confidence 99999999998 99999999999999999996 788887 4899999999999999997542211 0
Q ss_pred CCCCCCCCCCceEEEEEEchhhHhhhcC-----ChhHHHHHHHHH
Q 023875 225 GKETGLRDHGELIKVRVVPYRELWRTTP-----DAKVLTAIALYE 264 (276)
Q Consensus 225 g~~~g~~d~~E~i~v~wv~leel~~~i~-----d~ktl~al~l~~ 264 (276)
+. . ..+++|.+++.|++++++.+++. |+++++|+.+|+
T Consensus 142 ~~-~-~~~~~E~ie~~~~~~~e~~~~~~~G~i~d~~t~~al~~~~ 184 (185)
T TIGR00052 142 GI-G-GGADEEEIEVLHLVFSQALQWIKEGKIDNGKTVILLQWLQ 184 (185)
T ss_pred CC-C-CCCCccceEEEEeCHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 11 1 23567789999999999999874 888988886654
No 6
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=99.94 E-value=1.3e-25 Score=193.39 Aligned_cols=187 Identities=28% Similarity=0.374 Sum_probs=138.4
Q ss_pred eEEeCCCCCCCeeEEcCCCCChhhhhhccccee-eeeceEEEEEEEEEeCCCcEEEEEEEEee--eeecCCEEEEEEEe-
Q 023875 49 SITIPSQLSQPVHVVAAPGLSESDFRCAVESTL-FKQWLKNLQSETGILANGDMLLKQVLIQG--VDMFGKRIGFLKFK- 124 (276)
Q Consensus 49 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-f~~~~~~l~~~~~~~~~G~~~~~~v~~~~--v~~~g~~V~vl~~~- 124 (276)
++++|++.+.|+-++.+... .++..+ ..+ +.++|++++.-.+.-++|+.+.|+-..+. +.--+++|+||++.
T Consensus 8 ~i~l~sq~ne~~~ss~~~kp--~~i~~~--~~ie~~~kWi~Lkkv~~qD~~GKir~wes~~Rttr~ea~~dgVaIl~il~ 83 (225)
T KOG3041|consen 8 SITLPSQPNEPTMSSATGKP--SKIIEV--EDIESDGKWIRLKKVLYQDPTGKIRDWESVQRTTRVEARADGVAILAILE 83 (225)
T ss_pred eeeccCCCCCceeecccCCc--hheeee--ecccCCccEEEEEEEEEEcCCCceeeeehheecccccccCCeEEEEEEEe
Confidence 99999886666665555443 455543 444 99999999999999999998888755542 22224789998864
Q ss_pred ccee-eeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeecCCCccC
Q 023875 125 ADIF-CKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCD 203 (276)
Q Consensus 125 ~d~~-~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~spg~~~ 203 (276)
.|+. ..++.+|||+|.|++++|||||+||.| |++++||+|||+|||||.-+. ..... .+|..||+++
T Consensus 84 ~dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~g-e~~~~aAiREl~EEtGy~gkv-~~~s~----------~~f~DPGltn 151 (225)
T KOG3041|consen 84 SDGKPYIVLVKQFRPPTGKICIELPAGLIDDG-EDFEGAAIRELEEETGYKGKV-DMVSP----------TVFLDPGLTN 151 (225)
T ss_pred cCCcEEEEEEEeecCCCCcEEEEcccccccCC-CchHHHHHHHHHHHhCcccee-eeccc----------cEEcCCCCCC
Confidence 2322 235899999999999999999999998 999999999999999999431 22222 4888899876
Q ss_pred eEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcCChh
Q 023875 204 EEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAK 255 (276)
Q Consensus 204 e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~d~k 255 (276)
...++.++....+.+ +.|.+.++ .+++|.|++..+++.++|+.+.+.+
T Consensus 152 ~~~~iv~v~idg~~p---Enqrp~q~-ledgEfIev~~i~~~~L~~~~~~l~ 199 (225)
T KOG3041|consen 152 CNLCIVVVDIDGDVP---ENQRPVQQ-LEDGEFIEVFLIPLSELWRELADLD 199 (225)
T ss_pred CceEEEEEEecCCCc---cccCcccc-CCCCceEEEEEeeHHHHHHHHHhhh
Confidence 666665555444332 23455553 5889999999999999999887444
No 7
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.78 E-value=4.1e-18 Score=139.35 Aligned_cols=118 Identities=38% Similarity=0.532 Sum_probs=93.2
Q ss_pred CEEEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceee
Q 023875 116 KRIGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKF 195 (276)
Q Consensus 116 ~~V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~ 195 (276)
++|+++.++.+... .+++|+|.+.++..|++|||++|.| |++.+||+||++||||+.+. .+..++. +
T Consensus 3 ~~v~v~~~~~~~~i-Ll~~~~~~~~~~~~w~~PgG~ve~g-Es~~~aa~RE~~EE~Gl~~~--~~~~~~~---------~ 69 (137)
T cd03424 3 DAVAVLPYDDDGKV-VLVRQYRPPVGGWLLELPAGLIDPG-EDPEEAARRELEEETGYEAG--DLEKLGS---------F 69 (137)
T ss_pred CEEEEEEEcCCCeE-EEEEeeecCCCCEEEEeCCccCCCC-CCHHHHHHHHHHHHHCCCcc--ceEEEee---------E
Confidence 57889999887666 5889999988888999999999998 99999999999999999996 6777763 4
Q ss_pred ecCCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcCChh
Q 023875 196 FPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAK 255 (276)
Q Consensus 196 y~spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~d~k 255 (276)
+..++.....+++|++....... ....++.|..+++|++++++.+++.+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~E~~~~~w~~~~el~~~~~~~~ 120 (137)
T cd03424 70 YPSPGFSDERIHLFLAEDLSPGE---------EGLLDEGEDIEVVLVPLDEALELLADGE 120 (137)
T ss_pred ecCCcccCccEEEEEEEcccccc---------cCCCCCCCeeEEEEecHHHHHHHHHcCC
Confidence 54566666778888876532110 0134677899999999999999987544
No 8
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.71 E-value=1e-16 Score=133.23 Aligned_cols=120 Identities=14% Similarity=0.105 Sum_probs=84.3
Q ss_pred CCEEEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCcee
Q 023875 115 GKRIGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK 194 (276)
Q Consensus 115 g~~V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~ 194 (276)
..+|+++.++.+..+ .+++ .|.+.++..|++|+|++|+| |++++||+||++||||+++. .+..++. .
T Consensus 13 ~~av~~vv~~~~~~v-LL~~-r~~~~~~~~w~lPgG~ve~g-Et~~~aa~REl~EEtGl~~~--~~~~~~~--------~ 79 (142)
T cd04700 13 ARAAGAVILNERNDV-LLVQ-EKGGPKKGLWHIPSGAVEDG-EFPQDAAVREACEETGLRVR--PVKFLGT--------Y 79 (142)
T ss_pred eeeEEEEEEeCCCcE-EEEE-EcCCCCCCeEECCceecCCC-CCHHHHHHHHHHHhhCceee--ccEEEEE--------E
Confidence 356888888766654 3555 35555677999999999998 99999999999999999986 4555542 1
Q ss_pred eecCCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcCChhHH
Q 023875 195 FFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVL 257 (276)
Q Consensus 195 ~y~spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~d~ktl 257 (276)
.+..++......++|+++..... ......+|..+++|++++++.+++.++++.
T Consensus 80 ~~~~~~~~~~~~~~f~~~~~~~~----------~~~~~~~E~~~~~w~~~~el~~~~~~g~i~ 132 (142)
T cd04700 80 LGRFDDGVLVLRHVWLAEPEGQT----------LAPKFTDEIAEASFFSREDVAQLYAQGQLR 132 (142)
T ss_pred EEEcCCCcEEEEEEEEEEecCCc----------cccCCCCCEEEEEEECHHHhhhcccccccc
Confidence 22233333344567777643111 001234789999999999999999866654
No 9
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.67 E-value=6.7e-16 Score=129.20 Aligned_cols=111 Identities=19% Similarity=0.217 Sum_probs=77.4
Q ss_pred EEEEEEEecc-eeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceee
Q 023875 117 RIGFLKFKAD-IFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKF 195 (276)
Q Consensus 117 ~V~vl~~~~d-~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~ 195 (276)
.++.|.++.+ ..+ .+++++|.+ .|+||||++|.| |++.+||+||++||||+.+. .+... ..
T Consensus 3 ~~gaii~~~~~~~v-LLvr~~~~~----~W~lPGG~ve~g-Es~~~AA~REl~EETGl~v~--~~~~~----------~~ 64 (145)
T cd03672 3 VYGAIILNEDLDKV-LLVKGWKSK----SWSFPKGKINKD-EDDHDCAIREVYEETGFDIS--KYIDK----------DD 64 (145)
T ss_pred eeEEEEEeCCCCEE-EEEEecCCC----CEECCCccCCCC-cCHHHHHHHHHHHhhCccce--ecccc----------ce
Confidence 4566677654 344 477766553 699999999998 99999999999999999986 33221 14
Q ss_pred ecCCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcCC
Q 023875 196 FPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPD 253 (276)
Q Consensus 196 y~spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~d 253 (276)
|...+..+..+++|++....... .....+++|..+++|++++++.+++.+
T Consensus 65 ~~~~~~~~~~~~~f~~~~~~~~~--------~~~~~~~~E~~~~~Wv~~~el~~~~~~ 114 (145)
T cd03672 65 YIELIIRGQNVKLYIVPGVPEDT--------PFEPKTRKEISKIEWFDIKDLPTKKNK 114 (145)
T ss_pred eeecccCCcEEEEEEEecCCCCc--------ccCcCChhhhheEEEeeHHHhhhhhhh
Confidence 44445556677888875432110 000224578999999999999998753
No 10
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.67 E-value=7e-16 Score=128.27 Aligned_cols=128 Identities=20% Similarity=0.156 Sum_probs=84.1
Q ss_pred CCEEEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCcee
Q 023875 115 GKRIGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK 194 (276)
Q Consensus 115 g~~V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~ 194 (276)
+.+|+++.++.++.+ .++++.+ +...|++|||++|.| |++.+||+||++||||+++....+..+... ......
T Consensus 7 ~~~v~~vi~~~~~~v-Ll~~r~~---~~~~W~lPgG~ve~g-Es~~~aa~REl~EEtGl~~~~~~~~~~~~~--~~~~~~ 79 (148)
T PRK09438 7 PVSVLVVIYTPDLGV-LMLQRAD---DPDFWQSVTGSLEEG-ETPAQTAIREVKEETGIDVLAEQLTLIDCQ--RSIEYE 79 (148)
T ss_pred ceEEEEEEEeCCCeE-EEEEecC---CCCcEeCCcccCCCC-CCHHHHHHHHHHHHhCcCccccceeecccc--cccccc
Confidence 457888888777665 3555433 234799999999998 999999999999999999843334332100 000001
Q ss_pred eec------CCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcCChhHHHHHH
Q 023875 195 FFP------SAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIA 261 (276)
Q Consensus 195 ~y~------spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~d~ktl~al~ 261 (276)
+++ .++.+++.+++|+++... +. ..+.+|..++.|++++++.++........++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~f~~~~~~---------~~---~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~l~ 140 (148)
T PRK09438 80 IFPHWRHRYAPGVTRNTEHWFCLALPH---------ER---PVVLTEHLAYQWLDAREAAALTKSWSNAEAIE 140 (148)
T ss_pred cchhhhhccccccCCceeEEEEEecCC---------CC---ccccCcccceeeCCHHHHHHHhcChhHHHHHH
Confidence 121 456667788889886321 11 12345999999999999999876444434443
No 11
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.66 E-value=8.6e-16 Score=122.69 Aligned_cols=114 Identities=24% Similarity=0.235 Sum_probs=76.2
Q ss_pred EEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeec
Q 023875 118 IGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFP 197 (276)
Q Consensus 118 V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~ 197 (276)
|.++.+..+ .+ .++++.+.+..+..|++|||++|+| |++.+||+||++||||+.+....+..++. ++.
T Consensus 3 v~~vi~~~~-~v-LL~~r~~~~~~~~~w~lPgG~ve~g-E~~~~aa~REl~EEtGl~v~~~~~~~~~~---------~~~ 70 (120)
T cd04683 3 VYVLLRRDD-EV-LLQRRANTGYMDGQWALPAGHLEKG-EDAVTAAVREAREEIGVTLDPEDLRLAHT---------MHR 70 (120)
T ss_pred EEEEEEECC-EE-EEEEccCCCCCCCeEeCCccccCCC-CCHHHHHHHHHHHHHCCccChhheEEEEE---------EEe
Confidence 555555544 33 3677666555567999999999998 99999999999999999986555666653 333
Q ss_pred CCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcC
Q 023875 198 SAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 252 (276)
Q Consensus 198 spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~ 252 (276)
.++.....+++|+....... ... ..+++|..+++|++++++...+.
T Consensus 71 ~~~~~~~~~~~~f~~~~~~~--------~~~-~~~~~e~~~~~W~~~~~l~~~~~ 116 (120)
T cd04683 71 RTEDIESRIGLFFTVRRWSG--------EPR-NCEPDKCAELRWFPLDALPDDTV 116 (120)
T ss_pred cCCCCceEEEEEEEEEeecC--------ccc-cCCCCcEeeEEEEchHHCcchhc
Confidence 33333344554443222211 111 23567888999999999987664
No 12
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.63 E-value=4.5e-15 Score=125.99 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=87.9
Q ss_pred cCCEEEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCce
Q 023875 114 FGKRIGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGC 193 (276)
Q Consensus 114 ~g~~V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~ 193 (276)
+++.|+||++..+.. .+.++++ ..||+|||++|+| |++.+||+||++||||+.+. .+..++.
T Consensus 23 ~~~~V~ii~~~~~~~--LL~~~~~-----~~~elPgG~vE~g-Et~~eaA~REl~EETG~~~~--~~~~lg~-------- 84 (156)
T TIGR02705 23 NPNHVLVIPRYKDQW--LLTEHKR-----RGLEFPGGKVEPG-ETSKEAAIREVMEETGAIVK--ELHYIGQ-------- 84 (156)
T ss_pred CCCEEEEEEEECCEE--EEEEEcC-----CcEECCceecCCC-CCHHHHHHHHHHHHhCcEee--eeEEEEE--------
Confidence 467899999987744 4677764 3599999999998 99999999999999999986 7888874
Q ss_pred eeecCCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEE-EEchhhHhhhcCChh
Q 023875 194 KFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVR-VVPYRELWRTTPDAK 255 (276)
Q Consensus 194 ~~y~spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~-wv~leel~~~i~d~k 255 (276)
++.+++.++...++|+++... . ...+|.+++. +++++++.+++..++
T Consensus 85 -~~~~~~~~~~~~~vf~A~~~~-~-------------~~~~e~~E~~~~~~~~~~~~~~~~g~ 132 (156)
T TIGR02705 85 -YEVEGESTDFVKDVYFAEVSA-L-------------ESKDDYLETKGPVLLQEIPDIIKADP 132 (156)
T ss_pred -EEecCCCcEEEEEEEEEEEec-c-------------ccCCCceeeEeEEEHHHHHHHHhcCC
Confidence 777888888999999998751 1 1236778877 799999988886443
No 13
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.62 E-value=3.3e-15 Score=119.87 Aligned_cols=100 Identities=13% Similarity=0.167 Sum_probs=73.0
Q ss_pred ccCeeeeeCC-CCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeecCCCccCeEEEEE
Q 023875 131 ETGQKVRVPT-GRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLF 209 (276)
Q Consensus 131 ~~~rq~R~~~-g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~spg~~~e~i~lf 209 (276)
.++++.+.+. ....|+||||++|+| |++.+||+||++||||+++. .+..++. ++...+ ....+++|
T Consensus 14 LL~rR~~~~~~~~g~w~lPgG~ve~g-E~~~~aa~REl~EEtGl~~~--~~~~l~~---------~~~~~~-~~~~~~~~ 80 (117)
T cd04691 14 LLERRSLTKNADPGKLNIPGGHIEAG-ESQEEALLREVQEELGVDPL--SYTYLCS---------LYHPTS-ELQLLHYY 80 (117)
T ss_pred EEEEeCCCCCCCCCeEECcceeecCC-CCHHHHHHHHHHHHHCCCcc--cceEEEE---------EeccCC-CeEEEEEE
Confidence 4677555542 567899999999998 99999999999999999974 5666653 333333 45567777
Q ss_pred EEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcCChhH
Q 023875 210 LYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKV 256 (276)
Q Consensus 210 la~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~d~kt 256 (276)
++... . + ....+|..+++|++++++.....+.++
T Consensus 81 ~~~~~-~--------~----~~~~~E~~~~~W~~~~~l~~~~~~~~~ 114 (117)
T cd04691 81 VVTFW-Q--------G----EIPAQEAAEVHWMTANDIVLASEADRL 114 (117)
T ss_pred EEEEe-c--------C----CCCcccccccEEcCHHHcchhhhhHHh
Confidence 77543 1 1 123478899999999999987765543
No 14
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.61 E-value=3.4e-15 Score=130.53 Aligned_cols=114 Identities=17% Similarity=0.170 Sum_probs=78.0
Q ss_pred CCEEEEEEEeccee-eeccCe---eeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCC
Q 023875 115 GKRIGFLKFKADIF-CKETGQ---KVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPS 190 (276)
Q Consensus 115 g~~V~vl~~~~d~~-~~~~~r---q~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~ 190 (276)
++++++|++..+.. .+.+.+ ++|++.| .|+||||++|++||++++||+||++||||+.+. .+..++.
T Consensus 30 ~~aavvl~l~~~~~~~vLl~~R~~~~r~~~G--~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~--~~~~lg~----- 100 (190)
T PRK10707 30 RQAAVLIPIVRRPQPTLLLTQRSIHLRKHAG--QVAFPGGAVDPTDASLIATALREAQEEVAIPPS--AVEVIGV----- 100 (190)
T ss_pred CCeEEEEEEEECCCCEEEEEEeCCcccCCCC--cEEcCCcccCCCcccHHHHHHHHHHHHHCCCcc--ceEEEEE-----
Confidence 56888888853321 212333 4776666 579999999986578999999999999999986 7888875
Q ss_pred CceeeecCCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhc
Q 023875 191 TGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT 251 (276)
Q Consensus 191 ~~~~~y~spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i 251 (276)
+++.++..+..++.|++...... + . ..+++|.+++.|+|++++.++.
T Consensus 101 ----l~~~~~~~~~~~~~~v~~~~~~~--------~-~-~~d~~Ev~~v~~vpl~e~~~~~ 147 (190)
T PRK10707 101 ----LPPVDSSTGYQVTPVVGIIPPDL--------P-Y-RANEDEVAAVFEMPLAEALHLG 147 (190)
T ss_pred ----eeeeeccCCcEEEEEEEEECCCC--------C-C-CCChhhhheEEEEeHHHHhCcc
Confidence 44333333334444444322111 1 1 3478899999999999998874
No 15
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.61 E-value=7.8e-15 Score=118.22 Aligned_cols=114 Identities=18% Similarity=0.157 Sum_probs=75.1
Q ss_pred EEEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeee
Q 023875 117 RIGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFF 196 (276)
Q Consensus 117 ~V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y 196 (276)
+|+++.++.++.+ .++++.+.+ +...|++|||++|+| |++.+||+||++||||+.+.. ...++.+. ..+
T Consensus 4 ~~~~~i~~~~~~v-LL~~r~~~~-~~~~w~lPgG~ve~g-Et~~eaa~RE~~EEtGl~~~~--~~~~~~~~------~~~ 72 (125)
T cd04679 4 GCGAAILRDDGKL-LLVKRLRAP-EAGHWGIPGGKVDWM-EAVEDAVVREIEEETGLSIHS--TRLLCVVD------HII 72 (125)
T ss_pred EEEEEEECCCCEE-EEEEecCCC-CCCeEeCCeeeccCC-CCHHHHHHHHHHHHHCCCccc--ceEEEEEe------ecc
Confidence 4667777766655 466655543 356899999999998 999999999999999999874 33343210 112
Q ss_pred cCCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcC
Q 023875 197 PSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 252 (276)
Q Consensus 197 ~spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~ 252 (276)
..+ ......++|++.... . . ....+++|..+++|++++++.+.+.
T Consensus 73 ~~~-~~~~~~~~f~~~~~~-~--------~-~~~~~~~E~~~~~W~~~~~l~~~l~ 117 (125)
T cd04679 73 EEP-PQHWVAPVYLAENFS-G--------E-PRLMEPDKLLELGWFALDALPQPLT 117 (125)
T ss_pred cCC-CCeEEEEEEEEeecC-C--------c-cccCCCccccEEEEeCHHHCCchhH
Confidence 221 122344456665431 1 1 1123567889999999999987654
No 16
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.61 E-value=1.1e-14 Score=121.21 Aligned_cols=121 Identities=26% Similarity=0.313 Sum_probs=82.4
Q ss_pred CCEEEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCcee
Q 023875 115 GKRIGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK 194 (276)
Q Consensus 115 g~~V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~ 194 (276)
..+|+++.++.++.+ .++++.+.+ ..|++|+|++|+| |++.+||+||++||||+++. ....++.+. ...
T Consensus 3 ~~~v~~ii~~~~~~v-LL~~r~~~~---~~W~~PgG~~e~g-E~~~~aA~REv~EEtGl~~~--~~~~l~~~~----~~~ 71 (147)
T cd03671 3 RPNVGVVLFNEDGKV-FVGRRIDTP---GAWQFPQGGIDEG-EDPEQAALRELEEETGLDPD--SVEIIAEIP----DWL 71 (147)
T ss_pred CceEEEEEEeCCCEE-EEEEEcCCC---CCEECCcCCCCCC-cCHHHHHHHHHHHHHCCCcC--ceEEEEEcC----Cee
Confidence 457888888877665 477766655 5899999999998 99999999999999999986 334443210 011
Q ss_pred eecCC---------C-ccCeEEEEEEEEEeehhhHHHHhcCCCCCCC-CCCceEEEEEEchhhHhhhcCC
Q 023875 195 FFPSA---------G-GCDEEISLFLYRGRVDKEIIMQLQGKETGLR-DHGELIKVRVVPYRELWRTTPD 253 (276)
Q Consensus 195 ~y~sp---------g-~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~-d~~E~i~v~wv~leel~~~i~d 253 (276)
.|..+ | ..++.+++|++........+ .. .. +++|..+++|++++++.+++..
T Consensus 72 ~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~l--~~~~~~E~~~~~W~~~~el~~~~~~ 134 (147)
T cd03671 72 RYDLPPELKLKIWGGRYRGQEQKWFLFRFTGDDSEI-----DL--NAPEHPEFDEWRWVPLEELPDLIVP 134 (147)
T ss_pred EeeChhhhhccccCCcCCCEEEEEEEEEecCCCccc-----cC--CCCCCCCEeeEEeCCHHHHHHhchh
Confidence 23222 1 34566778877654311111 00 11 3679999999999999998863
No 17
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.60 E-value=5.3e-15 Score=118.67 Aligned_cols=119 Identities=24% Similarity=0.322 Sum_probs=85.0
Q ss_pred EEEEEEEecceeeeccCeeeeeCC-CCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceee
Q 023875 117 RIGFLKFKADIFCKETGQKVRVPT-GRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKF 195 (276)
Q Consensus 117 ~V~vl~~~~d~~~~~~~rq~R~~~-g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~ 195 (276)
+|+++.++.++.+ .++++.+.+. ....|++|||++|+| |++.+||+||++||||+.+....+.... .
T Consensus 4 ~v~~ii~~~~~~v-Ll~~r~~~~~~~~~~~~~pgG~i~~~-E~~~~aa~REl~EE~g~~~~~~~~~~~~----------~ 71 (134)
T PF00293_consen 4 AVGVIIFNEDGKV-LLIKRSRSPITFPGYWELPGGGIEPG-ESPEEAARRELKEETGLDVSPLELLGLF----------S 71 (134)
T ss_dssp EEEEEEEETTTEE-EEEEESTTSSSSTTEEESSEEEECTT-SHHHHHHHHHHHHHHSEEEEEEEEEEEE----------E
T ss_pred EEEEEEEeCCcEE-EEEEecCCCCCCCCeEecceeeEEcC-CchhhhHHhhhhhcccceecccccceee----------e
Confidence 5788888888654 5788777663 456899999999997 9999999999999999998543444443 3
Q ss_pred ecCCCcc--CeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcCChhH
Q 023875 196 FPSAGGC--DEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKV 256 (276)
Q Consensus 196 y~spg~~--~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~d~kt 256 (276)
+..+... ...+++|++........ . ..+.+|..+++|++++++.++...++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~e~~~~~W~~~~el~~~~~~~~~ 125 (134)
T PF00293_consen 72 YPSPSGDPEGEIVIFFIAELPSEQSE--------I-QPQDEEISEVKWVPPDELLELLLNGRI 125 (134)
T ss_dssp EEETTTESSEEEEEEEEEEEEEEESE--------C-HTTTTTEEEEEEEEHHHHHHHHHTTHH
T ss_pred ecccCCCcccEEEEEEEEEEeCCccc--------c-CCCCccEEEEEEEEHHHhhhchhCcch
Confidence 3333332 35666777765433211 1 234449999999999999999875544
No 18
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.60 E-value=1.6e-14 Score=115.82 Aligned_cols=121 Identities=19% Similarity=0.064 Sum_probs=78.3
Q ss_pred EEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeec
Q 023875 118 IGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFP 197 (276)
Q Consensus 118 V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~ 197 (276)
|+.|.+.. ..+ .++++.+.+ .+..|++|||++|.| |++.+||+||++||||+.+.. +..++.. ...+.
T Consensus 3 ~~~ii~~~-~~v-Ll~~~~~~~-~~~~w~lPgG~ve~g-E~~~~aa~RE~~EEtGl~~~~--~~~~~~~------~~~~~ 70 (128)
T cd04684 3 AYAVIPRD-GKL-LLIQKNGGP-YEGRWDLPGGGIEPG-ESPEEALHREVLEETGLTVEI--GRRLGSA------SRYFY 70 (128)
T ss_pred eEEEEEeC-CEE-EEEEccCCC-CCCeEECCCcccCCC-CCHHHHHHHHHHHHhCcEeec--ceeeeEE------EEEEE
Confidence 33344444 333 466665555 567899999999998 999999999999999999863 4444321 12344
Q ss_pred CCCc---cCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcCChhHHHH
Q 023875 198 SAGG---CDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTA 259 (276)
Q Consensus 198 spg~---~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~d~ktl~a 259 (276)
+++. .....++|.+...... .....+++|..++.|++++++...........|
T Consensus 71 ~~~~~~~~~~~~~~f~~~~~~~~---------~~~~~~~~e~~~~~W~~~~~l~~~~~~~~~~~a 126 (128)
T cd04684 71 SPDGDYDAHHLCVFYDARVVGGA---------LPVQEPGEDSHGAAWLPLDEAIERLLSPLVLWA 126 (128)
T ss_pred CCCCCeeccEEEEEEEEEEecCc---------cccCCCCCCceeeEEECHHHhhccCCCHHHHHh
Confidence 4443 2455667777643211 001235677889999999999877654444333
No 19
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.58 E-value=1.8e-14 Score=115.88 Aligned_cols=109 Identities=26% Similarity=0.209 Sum_probs=73.6
Q ss_pred EEEEEEecc---eeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCcee
Q 023875 118 IGFLKFKAD---IFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK 194 (276)
Q Consensus 118 V~vl~~~~d---~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~ 194 (276)
++.|.+..+ ..+ .+++..+. ..|++|||++|+| |++.+||.||++||||+++. .+..++.+
T Consensus 4 a~~ii~~~~~~~~~v-Ll~~~~~~----~~w~~PgG~v~~g-Es~~~aa~REl~EEtGl~~~--~~~~~~~~-------- 67 (131)
T cd03673 4 AGGVVFRGSDGGIEV-LLIHRPRG----DDWSLPKGKLEPG-ETPPEAAVREVEEETGIRAE--VGDPLGTI-------- 67 (131)
T ss_pred EEEEEEEccCCCeEE-EEEEcCCC----CcccCCCCccCCC-CCHHHHHHHHHhhhhCCceE--ecceEEEE--------
Confidence 444445443 333 35553332 4799999999998 99999999999999999986 34444431
Q ss_pred eecCC---CccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcC
Q 023875 195 FFPSA---GGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 252 (276)
Q Consensus 195 ~y~sp---g~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~ 252 (276)
.|+.+ +.....+++|.+..... . ....+++|..+++|++++++.+++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~E~~~~~W~~~~el~~~~~ 118 (131)
T cd03673 68 RYWFSSSGKRVHKTVHWWLMRALGG-E---------FTPQPDEEVDEVRWLPPDEARDRLS 118 (131)
T ss_pred EEeccCCCCCcceEEEEEEEEEcCC-C---------cccCCCCcEEEEEEcCHHHHHHHcC
Confidence 23322 24566777777764321 1 1012577899999999999998876
No 20
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.58 E-value=1.1e-14 Score=115.75 Aligned_cols=108 Identities=25% Similarity=0.225 Sum_probs=73.6
Q ss_pred EEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeec
Q 023875 118 IGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFP 197 (276)
Q Consensus 118 V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~ 197 (276)
|.++.++.++.+ .+.++.+. . .|++|||+++.| |++.+||+||++||||+.+. ..+..++. ++.
T Consensus 3 ~~~~i~~~~~~v-LL~~r~~~---~-~w~~PgG~ve~g-Et~~~aa~REl~EEtG~~~~-~~~~~~~~---------~~~ 66 (120)
T cd04680 3 ARAVVTDADGRV-LLVRHTYG---P-GWYLPGGGLERG-ETFAEAARRELLEELGIRLA-VVAELLGV---------YYH 66 (120)
T ss_pred eEEEEECCCCeE-EEEEECCC---C-cEeCCCCcCCCC-CCHHHHHHHHHHHHHCCccc-cccceEEE---------Eec
Confidence 556666655554 35553222 2 799999999998 99999999999999999986 12333332 232
Q ss_pred CCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcC
Q 023875 198 SAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 252 (276)
Q Consensus 198 spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~ 252 (276)
........+++|.+..... .. ..+++|..+++|++++++.+++.
T Consensus 67 ~~~~~~~~~~~f~~~~~~~---------~~--~~~~~E~~~~~w~~~~~l~~~~~ 110 (120)
T cd04680 67 SASGSWDHVIVFRARADTQ---------PV--IRPSHEISEARFFPPDALPEPTT 110 (120)
T ss_pred CCCCCceEEEEEEecccCC---------Cc--cCCcccEEEEEEECHHHCcccCC
Confidence 3334456677777754321 11 24677899999999999998765
No 21
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.56 E-value=7.4e-14 Score=118.08 Aligned_cols=121 Identities=18% Similarity=0.141 Sum_probs=82.2
Q ss_pred CCEEEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCcee
Q 023875 115 GKRIGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK 194 (276)
Q Consensus 115 g~~V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~ 194 (276)
..+|+++.++.++.+ .++++.+. ...|++|+|++++| |++.+||.||++||||+.+. .+..++.+.. ..
T Consensus 8 ~~~v~~~i~~~~g~v-LL~~r~~~---~~~w~~P~G~~~~g-E~~~~aa~REl~EEtG~~~~--~~~~~~~~~~----~~ 76 (156)
T PRK00714 8 RPNVGIILLNRQGQV-FWGRRIGQ---GHSWQFPQGGIDPG-ETPEQAMYRELYEEVGLRPE--DVEILAETRD----WL 76 (156)
T ss_pred CCeEEEEEEecCCEE-EEEEEcCC---CCeEECCcccCCCC-cCHHHHHHHHHHHHhCCCcc--ceEEEEEcCC----eE
Confidence 346888888877765 46775542 35799999999998 99999999999999999985 4555543100 00
Q ss_pred ee---------cCCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcC
Q 023875 195 FF---------PSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 252 (276)
Q Consensus 195 ~y---------~spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~ 252 (276)
.| ..++..++..++|++........+ . ....+++|..+++|++++++.+++.
T Consensus 77 ~y~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~-----~-l~~~~~~E~~~~~W~~~del~~~~~ 137 (156)
T PRK00714 77 RYDLPKRLVRRSKGVYRGQKQKWFLLRLTGDDSEI-----N-LNTTSHPEFDAWRWVSYWYPLDQVV 137 (156)
T ss_pred EecCcHHHhhccCCcccCcEEEEEEEEecCCCccc-----c-CCCCCCCCeeeeEeCCHHHHHHhch
Confidence 11 234455566778887653211110 0 0012457999999999999999874
No 22
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.56 E-value=3e-14 Score=115.26 Aligned_cols=110 Identities=23% Similarity=0.393 Sum_probs=73.2
Q ss_pred EEEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeee
Q 023875 117 RIGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFF 196 (276)
Q Consensus 117 ~V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y 196 (276)
+|+++.++.++.+ .++++.+.+ .+..|++|||++|.| |++.+||.||++||||+++. .+..++.+. ..|
T Consensus 3 av~~~i~~~~~~v-LL~~r~~~~-~~~~w~~PgG~ve~g-Es~~~aa~RE~~EEtGl~~~--~~~~~~~~~------~~~ 71 (130)
T cd04681 3 AVGVLILNEDGEL-LVVRRAREP-GKGTLDLPGGFVDPG-ESAEEALIREIREETGLKVT--ELSYLFSLP------NTY 71 (130)
T ss_pred eEEEEEEcCCCcE-EEEEecCCC-CCCcEeCCceeecCC-CCHHHHHHHHHHHHhCCccc--ceeEEEeec------cee
Confidence 4667777766655 466644444 345899999999998 99999999999999999986 555555321 123
Q ss_pred cCCCccCeEEEE-EEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHh
Q 023875 197 PSAGGCDEEISL-FLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELW 248 (276)
Q Consensus 197 ~spg~~~e~i~l-fla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~ 248 (276)
+..+.....+++ |++.. ... . . ..+.+|..+++|++++++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~-~~~--------~-~-~~~~~e~~~~~W~~~~el~ 113 (130)
T cd04681 72 PYGGMEYDTLDLFFVCQV-DDK--------P-I-VKAPDDVAELKWVVPQDIE 113 (130)
T ss_pred eeCCceeEEEEEEEEEEe-CCC--------C-C-cCChHHhheeEEecHHHCC
Confidence 434443344444 44432 111 1 1 2355788999999999984
No 23
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.56 E-value=3.4e-14 Score=113.12 Aligned_cols=110 Identities=23% Similarity=0.253 Sum_probs=70.4
Q ss_pred EEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeec
Q 023875 118 IGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFP 197 (276)
Q Consensus 118 V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~ 197 (276)
|+++.+.. ..+ .++++.|.+ ++..|++|||++|+| |++++||+||++||||+++.. +..++.+ ...++
T Consensus 3 v~~ii~~~-~~v-Ll~~r~~~~-~~~~w~~PgG~ie~g-E~~~~aa~RE~~EEtGl~~~~--~~~~~~~------~~~~~ 70 (122)
T cd04673 3 VGAVVFRG-GRV-LLVRRANPP-DAGLWSFPGGKVELG-ETLEQAALRELLEETGLEAEV--GRLLTVV------DVIER 70 (122)
T ss_pred EEEEEEEC-CEE-EEEEEcCCC-CCCeEECCCcccCCC-CCHHHHHHHHHHHhhCcEeee--ceeEEEE------EEeec
Confidence 34444444 333 466665543 456899999999998 999999999999999999863 3333321 12333
Q ss_pred CCCc---cCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhc
Q 023875 198 SAGG---CDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT 251 (276)
Q Consensus 198 spg~---~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i 251 (276)
.++. ....++.|++... . +. ..+.+|..+++|++++++.++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~-~--------~~---~~~~~E~~~~~w~~~~el~~~~ 115 (122)
T cd04673 71 DAAGRVEFHYVLIDFLCRYL-G--------GE---PVAGDDALDARWVPLDELAALS 115 (122)
T ss_pred cCCCccceEEEEEEEEEEeC-C--------Cc---ccCCcccceeEEECHHHHhhCc
Confidence 3322 1234444555432 1 11 2345788999999999998764
No 24
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.56 E-value=9.4e-14 Score=113.07 Aligned_cols=110 Identities=14% Similarity=0.139 Sum_probs=71.0
Q ss_pred EEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeec
Q 023875 118 IGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFP 197 (276)
Q Consensus 118 V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~ 197 (276)
|+.|.... ... .++++.+. ++..|++|||++|+| |++.+||.||++||||+++....+.... .+.
T Consensus 3 v~~ii~~~-~~v-Llv~r~~~--~~~~w~~PgG~ve~g-Es~~~aa~REl~EEtGl~~~~~~~~~~~----------~~~ 67 (134)
T cd03675 3 VAAVVERD-GRF-LLVEEETD--GGLVFNQPAGHLEPG-ESLIEAAVRETLEETGWHVEPTALLGIY----------QWT 67 (134)
T ss_pred EEEEEEEC-CEE-EEEEEccC--CCceEECCCccCCCC-CCHHHHHHHHHHHHHCcccccceEEEEE----------Eee
Confidence 44443443 333 46676554 567899999999998 9999999999999999998743443332 222
Q ss_pred CCC-ccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcC
Q 023875 198 SAG-GCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 252 (276)
Q Consensus 198 spg-~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~ 252 (276)
.+. ......++|++...... .....++|..++.|++++++.++..
T Consensus 68 ~~~~~~~~~~~~f~~~~~~~~----------~~~~~~~e~~~~~w~~~~el~~~~~ 113 (134)
T cd03675 68 APDSDTTYLRFAFAAELLEHL----------PDQPLDSGIVRAHWLTLEEILALAA 113 (134)
T ss_pred cCCCCeeEEEEEEEEEECCCC----------CCCCCCCCceeeEEEeHHHHHhhhh
Confidence 232 11222345665542110 1113456889999999999998873
No 25
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.54 E-value=4.9e-14 Score=113.71 Aligned_cols=113 Identities=17% Similarity=0.179 Sum_probs=70.8
Q ss_pred EEEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeee
Q 023875 117 RIGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFF 196 (276)
Q Consensus 117 ~V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y 196 (276)
+++++.+..++.+ .+++ |...+...|+||||++|.| |++.+||+||++||||+++....+ ++ .+
T Consensus 2 ~~~~ii~~~~~~v-LL~~--r~~~~~~~w~lPGG~ve~g-Es~~~a~~REl~EEtGl~~~~~~~--~~----------~~ 65 (121)
T cd04669 2 RASIVIINDQGEI-LLIR--RIKPGKTYYVFPGGGIEEG-ETPEEAAKREALEELGLDVRVEEI--FL----------IV 65 (121)
T ss_pred ceEEEEEeCCCEE-EEEE--EecCCCCcEECCceeccCC-CCHHHHHHHHHHHhhCeeEeeeeE--EE----------EE
Confidence 4566667664444 3666 3334456899999999998 999999999999999999953222 22 22
Q ss_pred cCCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhh
Q 023875 197 PSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRT 250 (276)
Q Consensus 197 ~spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~ 250 (276)
..+ +...++|.+..... . +....+......++++.+++.|++++++..+
T Consensus 66 ~~~---~~~~~~f~~~~~~g-~-~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l 114 (121)
T cd04669 66 NQN---GRTEHYFLARVISG-K-LGLGVGEEFERQSDDNQYHPVWVDLDQLETI 114 (121)
T ss_pred eeC---CcEEEEEEEEEECC-e-ecCCCchhhcccCCCCceEEEEEEHHHcccC
Confidence 222 23456777764321 1 1000000000112456789999999999865
No 26
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.53 E-value=5e-14 Score=113.31 Aligned_cols=111 Identities=16% Similarity=0.138 Sum_probs=75.0
Q ss_pred EEEEEEecceeeeccCeeeeeC--CCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceee
Q 023875 118 IGFLKFKADIFCKETGQKVRVP--TGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKF 195 (276)
Q Consensus 118 V~vl~~~~d~~~~~~~rq~R~~--~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~ 195 (276)
|+++.+..++.+ .++++.+.| .....|++|||+++.| |++.+||+||++||||+++....+.... .
T Consensus 3 v~~~~~~~~g~v-Ll~~r~~~~~~~~~g~w~~PgG~ve~g-E~~~~aa~RE~~EE~Gl~~~~~~~~~~~----------~ 70 (122)
T cd04682 3 VALALLIGDGRL-LLQLRDDKPGIPYPGHWDLPGGHREGG-ETPLECVLRELLEEIGLTLPESRIPWFR----------V 70 (122)
T ss_pred eEEEEEEcCCEE-EEEEccCCCCCCCCCcEeCCCccccCC-CCHHHHHHHHHHHHhCCcccccccceeE----------e
Confidence 444444445554 466644432 2345899999999998 9999999999999999998633333322 3
Q ss_pred ecCCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhc
Q 023875 196 FPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT 251 (276)
Q Consensus 196 y~spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i 251 (276)
|..+ ..+...++|++...... ....+.+|..+++|++++++.+..
T Consensus 71 ~~~~-~~~~~~~~f~~~~~~~~----------~~~~~~~E~~~~~W~~~~el~~~~ 115 (122)
T cd04682 71 YPSA-SPPGTEHVFVVPLTARE----------DAILFGDEGQALRLMTVEEFLAHE 115 (122)
T ss_pred cccC-CCCceEEEEEEEEecCC----------CccccCchhheeecccHHHHhhcc
Confidence 4443 34567788887654221 013467888999999999996643
No 27
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.53 E-value=4.9e-14 Score=114.16 Aligned_cols=116 Identities=16% Similarity=0.025 Sum_probs=75.4
Q ss_pred EEEEEEEec--ceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCcee
Q 023875 117 RIGFLKFKA--DIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK 194 (276)
Q Consensus 117 ~V~vl~~~~--d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~ 194 (276)
.|.|++++. +..+ .++++.+. ....|++|+|++|.| |++.+||+||++||||+.+. .+..+..... ....
T Consensus 3 ~~~v~~~~~~~~~~v-LL~~r~~~--~~~~w~~PgG~ve~~-Es~~~aa~RE~~EE~Gl~~~--~~~~~~~~~~--~~~~ 74 (129)
T cd04664 3 SVLVVPYRLTGEGRV-LLLRRSDK--YAGFWQSVTGGIEDG-ESPAEAARREVAEETGLDPE--RLTLLDRGAS--IAFV 74 (129)
T ss_pred EEEEEEEEeCCCCEE-EEEEeCCC--CCCcccccCcccCCC-CCHHHHHHHHHHHHHCCChh--heEEEeeccc--cccc
Confidence 467777776 6655 35664443 556899999999998 99999999999999999985 3444432100 0000
Q ss_pred eecCCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcC
Q 023875 195 FFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 252 (276)
Q Consensus 195 ~y~spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~ 252 (276)
.+..++ ....+++|++..... . ....++|..+++|++++++.+++.
T Consensus 75 ~~~~~~-~~~~~~~f~~~~~~~---------~--~~~~~~E~~~~~W~~~~e~~~~~~ 120 (129)
T cd04664 75 EFTDNG-RVWTEHPFAFHLPSD---------A--VVTLDWEHDAFEWVPPEEAAALLL 120 (129)
T ss_pred ccCCCc-eEEEEeEEEEEcCCC---------C--cccCCccccccEecCHHHHHHHHc
Confidence 111111 334567777764311 0 023456888999999999998876
No 28
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.53 E-value=2.3e-14 Score=115.96 Aligned_cols=113 Identities=22% Similarity=0.236 Sum_probs=73.7
Q ss_pred EEEEEEecceeeeccCeeeeeCC---CCeEEEec-eeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCce
Q 023875 118 IGFLKFKADIFCKETGQKVRVPT---GRVILELP-AGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGC 193 (276)
Q Consensus 118 V~vl~~~~d~~~~~~~rq~R~~~---g~~~wElP-aG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~ 193 (276)
|.++.++.++.+ .+.+ |... ....|++| ||++|.| |++ +||+||++||||+++....+..++.
T Consensus 3 v~v~~~~~~g~v-Ll~~--R~~~~~~~pg~w~~p~GG~ve~g-E~~-~aa~REl~EEtGl~~~~~~~~~~~~-------- 69 (127)
T cd04693 3 VHVCIFNSKGEL-LLQK--RSPNKDGWPGMWDLSVGGHVQAG-ETS-TAAEREVKEELGLELDFSELRPLFR-------- 69 (127)
T ss_pred EEEEEEeCCCeE-EEEE--ccCCCCCCCCcccccCCCcCCCC-CCH-HHHHHHHHHHhCCCcChhhcEEEEE--------
Confidence 455566666554 2433 4332 23589998 8999998 999 9999999999999987555665553
Q ss_pred eeecCCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcCChhH
Q 023875 194 KFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKV 256 (276)
Q Consensus 194 ~~y~spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~d~kt 256 (276)
..+..++.. .+.+|.+.. .. +.. ..+++|..+++|++++++.+++.+++.
T Consensus 70 ~~~~~~~~~--~~~~~~~~~-~~--------~~~--~~~~~E~~~~~w~~~~el~~~~~~~~~ 119 (127)
T cd04693 70 YFFEAEGFD--DYYLFYADV-EI--------GKL--ILQKEEVDEVKFVSKDEIDGLIGHGEF 119 (127)
T ss_pred EEeecCCeE--EEEEEEecC-cc--------ccc--ccCHHHhhhEEEeCHHHHHHHHhcCCc
Confidence 123333322 233343321 11 111 346678899999999999999886654
No 29
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.52 E-value=1.1e-13 Score=112.85 Aligned_cols=106 Identities=19% Similarity=0.102 Sum_probs=68.6
Q ss_pred EEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeecCCC
Q 023875 121 LKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAG 200 (276)
Q Consensus 121 l~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~spg 200 (276)
+.+..++.+ .+++..+.+ ....|++|||++|.| |++.+||+||++||||+.+.. +..++. ..+..++
T Consensus 6 ~~i~~~~~v-LL~~r~~~~-~~~~w~~PgG~ve~g-Es~~~aa~RE~~EEtGl~~~~--~~~~~~--------~~~~~~~ 72 (137)
T cd03427 6 CFIKDPDKV-LLLNRKKGP-GWGGWNGPGGKVEPG-ETPEECAIRELKEETGLTIDN--LKLVGI--------IKFPFPG 72 (137)
T ss_pred EEEEECCEE-EEEEecCCC-CCCeEeCCceeCCCC-CCHHHHHHHHHHHhhCeEeec--ceEEEE--------EEEEcCC
Confidence 333334443 355444433 456899999999998 999999999999999999873 444442 1233333
Q ss_pred -ccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhc
Q 023875 201 -GCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT 251 (276)
Q Consensus 201 -~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i 251 (276)
.....+++|++.... +. ..++.|..+++|++++++.++.
T Consensus 73 ~~~~~~~~~f~~~~~~---------~~---~~~~~e~~~~~W~~~~el~~~~ 112 (137)
T cd03427 73 EEERYGVFVFLATEFE---------GE---PLKESEEGILDWFDIDDLPLLP 112 (137)
T ss_pred CCcEEEEEEEEECCcc---------cc---cCCCCccccceEEcHhhccccc
Confidence 244555666664321 11 1235566789999999997654
No 30
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.52 E-value=1.4e-13 Score=111.85 Aligned_cols=97 Identities=18% Similarity=0.052 Sum_probs=65.5
Q ss_pred ccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeecCCC---ccCeEEE
Q 023875 131 ETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAG---GCDEEIS 207 (276)
Q Consensus 131 ~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~spg---~~~e~i~ 207 (276)
.++++.|. ..|.+|||++|.| |++.+||+||++||||+.+... +..++.+ .|..+. .....++
T Consensus 18 LLv~~~~~----~~w~~PgG~ve~~-E~~~~aa~RE~~EEtG~~~~~~-~~~l~~~--------~~~~~~~~~~~~~~~~ 83 (122)
T cd04666 18 LLVTSRRT----GRWIVPKGGPEKD-ESPAEAAAREAWEEAGVRGKIG-KRPLGRF--------EYRKRSKNRPPRCEVA 83 (122)
T ss_pred EEEEecCC----CeEECCCCCcCCC-CCHHHHHHHHHHHHhCCccccc-ceEEEEE--------EeeecCCCCCceEEEE
Confidence 45664443 5799999999998 9999999999999999997532 2555531 222232 1244555
Q ss_pred EEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcC
Q 023875 208 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 252 (276)
Q Consensus 208 lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~ 252 (276)
+|.+..... .. ..++.|..+++|++++++.+++.
T Consensus 84 ~f~~~~~~~----------~~-~~~~~e~~~~~W~~~~ea~~~~~ 117 (122)
T cd04666 84 VFPLEVTEE----------LD-EWPEMHQRKRKWFSPEEAALLVE 117 (122)
T ss_pred EEEEEEecc----------cc-CCcccCceEEEEecHHHHHHhcC
Confidence 666553211 01 22445678999999999998875
No 31
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.51 E-value=6.2e-14 Score=113.75 Aligned_cols=108 Identities=17% Similarity=0.153 Sum_probs=76.3
Q ss_pred EEEEEEecceeeeccCeeeeeCCCC---eEEEe-ceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCce
Q 023875 118 IGFLKFKADIFCKETGQKVRVPTGR---VILEL-PAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGC 193 (276)
Q Consensus 118 V~vl~~~~d~~~~~~~rq~R~~~g~---~~wEl-PaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~ 193 (276)
+.++.++.++.+ .+ |.|..... ..|++ |||+++.| |++.+||+||++||||+.+. .+..++.
T Consensus 3 ~~v~i~~~~~~i-Ll--~~R~~~~~~~~g~w~~~~GG~ve~g-E~~~~aa~REl~EEtGl~~~--~l~~~~~-------- 68 (126)
T cd04697 3 TYIFVFNSEGKL-CV--HKRTLTKDWCPGYWDIAFGGVVQAG-ESYLQNAQRELEEELGIDGV--QLTPLGL-------- 68 (126)
T ss_pred EEEEEEcCCCeE-EE--EECCCCCCCCCCcccCcCCcccCCC-CCHHHHHHHHHHHHHCCCcc--ccEEeeE--------
Confidence 456667776654 23 45665443 46999 68999998 99999999999999999986 6777663
Q ss_pred eeecCCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcC
Q 023875 194 KFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 252 (276)
Q Consensus 194 ~~y~spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~ 252 (276)
++.+.+......++|++... . .. ..+++|..+++|++++++.+++.
T Consensus 69 -~~~~~~~~~~~~~~f~~~~~--~--------~~--~~~~~E~~~~~w~~~~el~~~~~ 114 (126)
T cd04697 69 -FYYDTDGNRVWGKVFSCVYD--G--------PL--KLQEEEVEEITWLSINEILQFKE 114 (126)
T ss_pred -EEecCCCceEEEEEEEEEEC--C--------CC--CCCHhHhhheEEcCHHHHHHHhh
Confidence 33333334445567776532 1 11 24567889999999999999876
No 32
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.51 E-value=9e-14 Score=115.28 Aligned_cols=116 Identities=20% Similarity=0.230 Sum_probs=77.1
Q ss_pred EEEEEEecc---eeeeccCeeeeeCCC---CeEEEe-ceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCC
Q 023875 118 IGFLKFKAD---IFCKETGQKVRVPTG---RVILEL-PAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPS 190 (276)
Q Consensus 118 V~vl~~~~d---~~~~~~~rq~R~~~g---~~~wEl-PaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~ 190 (276)
|.++.++.+ +. +.-|.|.+.. ...|++ |||++|+| |++.+||+||++||||+.+....+..++.+.
T Consensus 5 v~~~v~~~~~~~~~---vLl~~R~~~~~~~pg~W~~~~gG~ve~g-Et~~~aa~REl~EEtGl~~~~~~l~~~~~~~--- 77 (144)
T cd04692 5 FHCWIITKDEGKGY---VLLQKRSANKKTYPGLWDISSAGHILAG-ETPLEDGIRELEEELGLDVSADDLIPLGTFK--- 77 (144)
T ss_pred EEEEEEEccCCCCE---EEEEecCCCCCCCCCccccccCcccCCC-CCHHHHHHHHHHHHhCCCCChHHeEEeeEEE---
Confidence 445555544 22 2334576643 348999 59999998 9999999999999999988655677665420
Q ss_pred Cceeeec-CCC-ccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcC
Q 023875 191 TGCKFFP-SAG-GCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 252 (276)
Q Consensus 191 ~~~~~y~-spg-~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~ 252 (276)
..+. ..+ ...+..++|++....... .. ..+++|..+++|++++++.+++.
T Consensus 78 ---~~~~~~~~~~~~~~~~~f~~~~~~~~~-------~~--~~~~~E~~~~~W~~~~el~~~~~ 129 (144)
T cd04692 78 ---IEYDHIGKLIDREFHHVYLYELKVPLE-------EF--TLQKEEVAGVVLIPLDEFAELLE 129 (144)
T ss_pred ---EeccccCCCccceEEEEEEEeccCChh-------hc--CCChhHhheEEEECHHHHHHHHH
Confidence 1111 112 234566788876543211 11 24668899999999999998875
No 33
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.50 E-value=1.6e-13 Score=112.43 Aligned_cols=105 Identities=21% Similarity=0.240 Sum_probs=71.5
Q ss_pred EEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeec
Q 023875 118 IGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFP 197 (276)
Q Consensus 118 V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~ 197 (276)
|.+...+.+..+ .++++.+++ ...|.+|||+++.| |++.+||+||++||||+.+. .+..++.. .+.
T Consensus 3 v~i~l~~~~~~v-LL~~r~~~~--~~~w~lPgG~ie~g-Et~~~aA~REl~EEtGl~~~--~~~~l~~~--------~~~ 68 (131)
T cd03429 3 VIVLVIDGGDRI-LLARQPRFP--PGMYSLLAGFVEPG-ESLEEAVRREVKEEVGIRVK--NIRYVGSQ--------PWP 68 (131)
T ss_pred EEEEEEeCCCEE-EEEEecCCC--CCcCcCCcccccCC-CCHHHHHhhhhhhccCceee--eeEEEeec--------CCC
Confidence 333333332444 467766665 34688999999998 99999999999999999986 56666531 122
Q ss_pred CCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhh
Q 023875 198 SAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRT 250 (276)
Q Consensus 198 spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~ 250 (276)
.+ +..+.+|++.... +.. ..+++|..+++|++++++.++
T Consensus 69 ~~---~~~~~~f~~~~~~---------~~~--~~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 69 FP---SSLMLGFTAEADS---------GEI--VVDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred CC---ceEEEEEEEEEcC---------Ccc--cCCchhhhccEeecHHHHhhc
Confidence 22 3455667765421 111 246678889999999998875
No 34
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.50 E-value=1.3e-13 Score=116.45 Aligned_cols=89 Identities=22% Similarity=0.172 Sum_probs=64.4
Q ss_pred CCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeecCCCccCeEEEEEEEEEeehhhHH
Q 023875 141 GRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEII 220 (276)
Q Consensus 141 g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~spg~~~e~i~lfla~~~~~~~~i 220 (276)
....|++|||++|+|||++.+||+||++||||+++. .+..++. +..........+++|++......
T Consensus 30 ~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~--~~~~l~~---------~~~~~~~~~~~v~~~~~~~~~~~--- 95 (157)
T cd03426 30 HPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPD--SVEVLGR---------LPPYYTRSGFVVTPVVGLVPPPL--- 95 (157)
T ss_pred CCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCcc--ceEEEEE---------CCCccccCCCEEEEEEEEECCCC---
Confidence 455899999999996599999999999999999986 5666653 22222233456777777543210
Q ss_pred HHhcCCCCCCCCCCceEEEEEEchhhHhhh
Q 023875 221 MQLQGKETGLRDHGELIKVRVVPYRELWRT 250 (276)
Q Consensus 221 ~~~~g~~~g~~d~~E~i~v~wv~leel~~~ 250 (276)
....+++|..++.|++++++.+.
T Consensus 96 -------~~~~~~~E~~~~~W~~~~el~~~ 118 (157)
T cd03426 96 -------PLVLNPDEVAEVFEVPLSFLLDP 118 (157)
T ss_pred -------CCCCCHHHhheeEEEcHHHHhCc
Confidence 11346679999999999999875
No 35
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.50 E-value=1.4e-13 Score=111.28 Aligned_cols=111 Identities=23% Similarity=0.204 Sum_probs=68.5
Q ss_pred EEEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeee
Q 023875 117 RIGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFF 196 (276)
Q Consensus 117 ~V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y 196 (276)
+|+.+.++.+..+ .++++ |.. .+..|++|||++|.| |++.+||.||++||||+.+. .+..++. ..+
T Consensus 4 ~~~~~v~~~~~~v-Ll~~r-~~~-~~~~w~~PGG~ve~g-Et~~~aa~RE~~EE~Gl~~~--~~~~~~~--------~~~ 69 (127)
T cd04670 4 GVGGLVLNEKNEV-LVVQE-RNK-TPNGWKLPGGLVDPG-EDIFDGAVREVLEETGIDTE--FVSVVGF--------RHA 69 (127)
T ss_pred EEEEEEEcCCCeE-EEEEc-cCC-CCCcEECCCccCCCC-CCHHHHHHHHHHHHHCCCcc--eeEEEEE--------Eec
Confidence 4566666665554 35543 333 556899999999998 99999999999999999985 2333321 111
Q ss_pred cCCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhc
Q 023875 197 PSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT 251 (276)
Q Consensus 197 ~spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i 251 (276)
.+........+|++.. .... ... ..+++|..+++|++++++.+.-
T Consensus 70 -~~~~~~~~~~~~~~~~-~~~~------~~~--~~~~~E~~~~~w~~~~el~~~~ 114 (127)
T cd04670 70 -HPGAFGKSDLYFICRL-KPLS------FDI--NFDTSEIAAAKWMPLEEYISQP 114 (127)
T ss_pred -CCCCcCceeEEEEEEE-ccCc------CcC--CCChhhhheeEEEcHHHHhcch
Confidence 1122222223344332 1111 111 2456788899999999996653
No 36
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.50 E-value=2.3e-13 Score=109.71 Aligned_cols=109 Identities=18% Similarity=0.175 Sum_probs=67.9
Q ss_pred EEEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeee
Q 023875 117 RIGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFF 196 (276)
Q Consensus 117 ~V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y 196 (276)
.|+++.++.++.. .++|+.+ .+..|++|||++|.| |++.+||+||++||||+++....+..+.. ..|
T Consensus 4 ~v~~~i~~~~~~i-LL~r~~~---~~~~w~lPGG~ve~g-Es~~~aa~REl~EEtGl~~~~~~~~~~~~--------~~~ 70 (125)
T cd04696 4 TVGALIYAPDGRI-LLVRTTK---WRGLWGVPGGKVEWG-ETLEEALKREFREETGLKLRDIKFAMVQE--------AIF 70 (125)
T ss_pred EEEEEEECCCCCE-EEEEccC---CCCcEeCCceeccCC-CCHHHHHHHHHHHHhCCcccccceEEEEE--------Eec
Confidence 3555556645444 3555222 235799999999998 99999999999999999986434333321 122
Q ss_pred cCCCcc---CeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhc
Q 023875 197 PSAGGC---DEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT 251 (276)
Q Consensus 197 ~spg~~---~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i 251 (276)
.++.. ...+..|++... .. . ....+|..+++|++++++.++-
T Consensus 71 -~~~~~~~~~~~~~~~~~~~~--~~-------~---~~~~~e~~~~~W~~~~el~~~~ 115 (125)
T cd04696 71 -SEEFHKPAHFVLFDFFARTD--GT-------E---VTPNEEIVEWEWVTPEEALDYP 115 (125)
T ss_pred -cCCCCCccEEEEEEEEEEec--CC-------c---ccCCcccceeEEECHHHHhcCC
Confidence 22221 122333445432 11 1 2345688999999999998764
No 37
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.49 E-value=3.1e-13 Score=109.81 Aligned_cols=110 Identities=18% Similarity=0.114 Sum_probs=70.4
Q ss_pred EEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeec
Q 023875 118 IGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFP 197 (276)
Q Consensus 118 V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~ 197 (276)
++++.++.++.+ .+.++.|.+. +..|++|+|++|.| |++.+||+||++||||+++.. ...+. .+.
T Consensus 3 ~~~vv~~~~~~v-Ll~~r~~~~~-~~~w~lPgG~ve~g-Et~~~aa~REl~EEtG~~~~~--~~~~~----------~~~ 67 (123)
T cd04671 3 VAAVILNNQGEV-LLIQEAKRSC-RGKWYLPAGRMEPG-ETIEEAVKREVKEETGLDCEP--TTLLS----------VEE 67 (123)
T ss_pred EEEEEEcCCCEE-EEEEecCCCC-CCeEECceeecCCC-CCHHHHHHHHHHHHHCCeeec--ceEEE----------EEc
Confidence 344555555554 3666555443 45899999999998 999999999999999999973 33332 222
Q ss_pred CCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcC
Q 023875 198 SAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 252 (276)
Q Consensus 198 spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~ 252 (276)
.++ ....++|.++... .. + .....+++|..+++|++++++...+.
T Consensus 68 ~~~--~~~~~~f~a~~~~-g~-~------~~~~~~~~e~~~~~W~~~~el~~~~~ 112 (123)
T cd04671 68 QGG--SWFRFVFTGNITG-GD-L------KTEKEADSESLQARWYSNKDLPLPLR 112 (123)
T ss_pred cCC--eEEEEEEEEEEeC-Ce-E------ccCCCCCcceEEEEEECHHHCCCccc
Confidence 222 2345566665431 11 0 00012456788999999999954443
No 38
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.49 E-value=1.6e-13 Score=118.17 Aligned_cols=112 Identities=19% Similarity=0.187 Sum_probs=76.2
Q ss_pred CeEE-EeceeecCCCCCCHHHHHHHHHHHHhCCcccccc-eeeeccccCCCCceeee--cCCCccCeEEEEEEEEEeehh
Q 023875 142 RVIL-ELPAGMLDDDKGDFVGTAVREVEEETGIQLKLED-MIDLTAFLYPSTGCKFF--PSAGGCDEEISLFLYRGRVDK 217 (276)
Q Consensus 142 ~~~w-ElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~-l~~L~~l~~~~~~~~~y--~spg~~~e~i~lfla~~~~~~ 217 (276)
...| ++|||+++.| |++.+||+||++|||||++...+ +..++.+ ...+ ...+...+.+++|.+......
T Consensus 63 Pg~wd~~~~G~v~~g-E~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~------~~~~~~~~~~~~~e~~~~f~~~~~~~~ 135 (180)
T cd03676 63 PGMLDNLVAGGLGHG-EGPEETLVKECDEEAGLPEDLVRQLKPVGVV------SYLREGEAGGLQPEVEYVYDLELPPDF 135 (180)
T ss_pred CCceeeecccCCCCC-CCHHHHHHHHHHHHhCCCHHHHhhceeccEE------EEEEEcCCCcEeeeEEEEEEEEcCCCC
Confidence 4578 7999999998 99999999999999999986322 4444321 1233 334557788888876532111
Q ss_pred hHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcCChhHH--HHHHHHHHHHhCC
Q 023875 218 EIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVL--TAIALYEMASKEE 270 (276)
Q Consensus 218 ~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~d~ktl--~al~l~~~l~~~g 270 (276)
.. ..+++|.+++.|++++|+.+++.++.+. .++...+.|.+.|
T Consensus 136 ---------~~-~~~~~Ev~~~~~~~~~el~~~l~~g~~~~~~~lv~~~~~~~~~ 180 (180)
T cd03676 136 ---------IP-APQDGEVESFRLLTIDEVLRALKEGEFKPNCALVTLDFLIRHG 180 (180)
T ss_pred ---------ee-CCCCCcEeEEEEECHHHHHHHHHcCCCCcccHhHHHHHHhhcC
Confidence 01 3477899999999999999998754332 3344445565554
No 39
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.49 E-value=2.2e-13 Score=111.11 Aligned_cols=112 Identities=17% Similarity=0.135 Sum_probs=70.5
Q ss_pred EEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeec
Q 023875 118 IGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFP 197 (276)
Q Consensus 118 V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~ 197 (276)
|.+.....+... .++++.+. ....|.+|||++++| |++.+||.||++||||+++. .+..... ...+|.
T Consensus 5 v~~~~~~~~~~v-Ll~~r~~~--~~g~w~~PgG~ve~g-Es~~~aa~RE~~EEtGl~~~--~~~~~~~------~~~~~~ 72 (131)
T cd04695 5 VLLRSLDKETKV-LLLKRVKT--LGGFWCHVAGGVEAG-ETAWQAALRELKEETGISLP--ELYNADY------LEQFYE 72 (131)
T ss_pred EEEEEcCCCCEE-EEEEecCC--CCCcEECCcccccCC-CCHHHHHHHHHHHHhCCCcc--ccccccc------eeeEee
Confidence 333344444443 35553332 334689999999998 99999999999999999986 3322111 012455
Q ss_pred CCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcC
Q 023875 198 SAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 252 (276)
Q Consensus 198 spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~ 252 (276)
.++.....+.+|++.... . .. ...++|..+++|++++++.++..
T Consensus 73 ~~~~~~~~~~~f~~~~~~-~--------~~--~~~~~E~~~~~W~~~~e~~~~~~ 116 (131)
T cd04695 73 ANDNRILMAPVFVGFVPP-H--------QE--VVLNHEHTEYRWCSFAEALELAP 116 (131)
T ss_pred cCCceEEEEEEEEEEecC-C--------Cc--cccCchhcccEecCHHHHHHhcC
Confidence 444333345566665421 1 11 12346889999999999998875
No 40
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.49 E-value=2.5e-13 Score=110.67 Aligned_cols=102 Identities=17% Similarity=0.120 Sum_probs=70.7
Q ss_pred EEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeec
Q 023875 118 IGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFP 197 (276)
Q Consensus 118 V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~ 197 (276)
|+++.+..+ .+ .++++.+.+ +...|++|||++|.| |++++||+||++||||+++. ....++ +|.
T Consensus 16 v~~ii~~~~-~v-LL~kr~~~~-~~g~w~lPgG~ve~g-E~~~~a~~REl~EEtGl~~~--~~~~~~----------~~~ 79 (130)
T cd04511 16 VGCVPEWEG-KV-LLCRRAIEP-RHGFWTLPAGFMENG-ETTEQGALRETWEEAGARVE--IDGLYA----------VYS 79 (130)
T ss_pred EEEEEecCC-EE-EEEEecCCC-CCCeEECCcccccCC-CCHHHHHHHHHHHHhCCEEE--eeeEEE----------EEe
Confidence 445555544 33 477765544 456899999999998 99999999999999999985 223332 555
Q ss_pred CCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHh
Q 023875 198 SAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELW 248 (276)
Q Consensus 198 spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~ 248 (276)
.++. ....++|+++.... . .....|..+.+|++++++.
T Consensus 80 ~~~~-~~~~~~f~~~~~~~---------~---~~~~~e~~~~~~~~~~~l~ 117 (130)
T cd04511 80 VPHI-SQVYMFYRARLLDL---------D---FAPGPESLEVRLFTEEEIP 117 (130)
T ss_pred cCCc-eEEEEEEEEEEcCC---------c---ccCCcchhceEEECHHHCC
Confidence 5544 34566677765311 1 1244677899999999995
No 41
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.48 E-value=7.7e-13 Score=107.10 Aligned_cols=114 Identities=19% Similarity=0.183 Sum_probs=69.9
Q ss_pred EEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeec
Q 023875 118 IGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFP 197 (276)
Q Consensus 118 V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~ 197 (276)
++.|.+..+ .+ .++++.+. +...|++|||++|.| |++.+||+||+.||||+.+...++..+..+ ++.
T Consensus 4 a~~iv~~~~-~v-Ll~~r~~~--~~~~~~lPGG~ve~g-Et~~~aa~RE~~EEtGl~v~~~~~~~~~~~--------~~~ 70 (128)
T cd04687 4 AKAVIIKND-KI-LLIKHHDD--GGVWYILPGGGQEPG-ETLEDAAHRECKEEIGIDVEIGPLLFVREY--------IGH 70 (128)
T ss_pred EEEEEEECC-EE-EEEEEEcC--CCCeEECCCcccCCC-CCHHHHHHHHHHHHHCCccccCcEEEEEEE--------ecc
Confidence 444444443 33 35664433 346799999999998 999999999999999999976566555431 111
Q ss_pred C----C-CccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhc
Q 023875 198 S----A-GGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT 251 (276)
Q Consensus 198 s----p-g~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i 251 (276)
. . ...+...++|+++...... .. ....+++|..+++|++++++.++.
T Consensus 71 ~~~~~~~~~~~~i~~~f~~~~~~~~~------~~-~~~~~~~~~~~~~W~~~~~l~~~~ 122 (128)
T cd04687 71 NPTSELPGHFHQVELMFECKIKSGTP------AK-TPSKPDPNQIGVEWLKLKELGDIP 122 (128)
T ss_pred CccccCCCceeEEEEEEEEEECCCCc------cc-ccCCCCCCEEeeEEEcHHHhCccc
Confidence 1 1 1123344556665432110 00 001234456799999999997653
No 42
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.48 E-value=6.3e-13 Score=109.61 Aligned_cols=98 Identities=20% Similarity=0.208 Sum_probs=59.4
Q ss_pred CeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeecCCCccCeEEEEEEEEEeehhhHHH
Q 023875 142 RVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIM 221 (276)
Q Consensus 142 ~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~spg~~~e~i~lfla~~~~~~~~i~ 221 (276)
...|++|||++|+| |++.+||+||++||||+++....+.... +. .......|++ +...+..++|++..+....
T Consensus 30 ~g~W~lPgG~ve~g-Es~~~aa~REl~EEtGl~~~~~~~~~~~-~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--- 102 (141)
T PRK15472 30 PGQWALSGGGVEPG-ERIEEALRREIREELGEQLLLTEITPWT-FR-DDIRTKTYAD-GRKEEIYMIYLIFDCVSAN--- 102 (141)
T ss_pred CCceeCCcccCCCC-CCHHHHHHHHHHHHHCCceeeeeecccc-cc-ccceeEEecC-CCceeEEEEEEEEEeecCC---
Confidence 36899999999998 9999999999999999987532222110 00 0000012322 2333333444332221111
Q ss_pred HhcCCCCCCCCCCceEEEEEEchhhHhhhcC
Q 023875 222 QLQGKETGLRDHGELIKVRVVPYRELWRTTP 252 (276)
Q Consensus 222 ~~~g~~~g~~d~~E~i~v~wv~leel~~~i~ 252 (276)
+. ....+|..+++|++++++.++..
T Consensus 103 ---~~---~~~~~E~~~~~w~~~~el~~l~~ 127 (141)
T PRK15472 103 ---RD---VKINEEFQDYAWVKPEDLVHYDL 127 (141)
T ss_pred ---Cc---ccCChhhheEEEccHHHhccccc
Confidence 11 23457889999999999998754
No 43
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.47 E-value=4.7e-13 Score=122.13 Aligned_cols=110 Identities=19% Similarity=0.175 Sum_probs=78.7
Q ss_pred CEEEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceee
Q 023875 116 KRIGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKF 195 (276)
Q Consensus 116 ~~V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~ 195 (276)
++|. +.+..+... .++++.|.+. ..|.+|||++|+| |++++||+||++||||+++. .+..++. ..
T Consensus 133 paVi-v~V~~~~~i-LL~rr~~~~~--g~wslPgG~vE~G-Es~eeAa~REv~EEtGl~v~--~~~~~~s--------~~ 197 (256)
T PRK00241 133 PCII-VAVRRGDEI-LLARHPRHRN--GVYTVLAGFVEVG-ETLEQCVAREVMEESGIKVK--NLRYVGS--------QP 197 (256)
T ss_pred CEEE-EEEEeCCEE-EEEEccCCCC--CcEeCcccCCCCC-CCHHHHhhhhhhhccCceee--eeEEEEe--------Ee
Confidence 3444 344444444 5888888874 4689999999998 99999999999999999986 6777753 12
Q ss_pred ecCCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcCCh
Q 023875 196 FPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDA 254 (276)
Q Consensus 196 y~spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~d~ 254 (276)
++. .+..++.|+++... +.. ..+++|..+++|++++++..+..++
T Consensus 198 ~~~---p~~lm~~f~a~~~~---------~~~--~~~~~Ei~~a~W~~~del~~lp~~~ 242 (256)
T PRK00241 198 WPF---PHSLMLGFHADYDS---------GEI--VFDPKEIADAQWFRYDELPLLPPSG 242 (256)
T ss_pred ecC---CCeEEEEEEEEecC---------Ccc--cCCcccEEEEEEECHHHCcccCCch
Confidence 332 24566778776431 111 3466799999999999998766544
No 44
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.47 E-value=6.1e-13 Score=110.86 Aligned_cols=115 Identities=14% Similarity=0.177 Sum_probs=70.4
Q ss_pred EEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeec
Q 023875 118 IGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFP 197 (276)
Q Consensus 118 V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~ 197 (276)
|+++.++.++.+ .+++..+.| .+..|++|||++|.| |++.+||+||++||||+++....+..++.+ ...+.
T Consensus 15 v~~vI~~~~g~v-Ll~~R~~~p-~~g~w~lPGG~ve~g-Es~~~aa~RE~~EE~Gl~v~~~~~~~l~~~------~~~~~ 85 (144)
T cd03430 15 IDLIVENEDGQY-LLGKRTNRP-AQGYWFVPGGRIRKN-ETLTEAFERIAKDELGLEFLISDAELLGVF------EHFYD 85 (144)
T ss_pred EEEEEEeCCCeE-EEEEccCCC-CCCcEECCCceecCC-CCHHHHHHHHHHHHHCCCcccccceEEEEE------EEEec
Confidence 555556655554 344432222 345799999999998 999999999999999999864422333311 01222
Q ss_pred C----CCccCeEEE-EEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcC
Q 023875 198 S----AGGCDEEIS-LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 252 (276)
Q Consensus 198 s----pg~~~e~i~-lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~ 252 (276)
. ++.....+. +|++... . +.. ...++|..+++|++++++.++..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~-~--------~~~--~~~~~e~~~~~W~~~~el~~~~~ 134 (144)
T cd03430 86 DNFFGDDFSTHYVVLGYVLKLS-S--------NEL--LLPDEQHSEYQWLTSDELLADDD 134 (144)
T ss_pred cccccCCCccEEEEEEEEEEEc-C--------Ccc--cCCchhccEeEEecHHHHhcCCC
Confidence 1 222222333 3444322 1 111 24667889999999999987543
No 45
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.46 E-value=5.3e-13 Score=107.77 Aligned_cols=93 Identities=26% Similarity=0.323 Sum_probs=63.4
Q ss_pred eEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeec-CCCccCeEEEEEEEEEeehhhHHH
Q 023875 143 VILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFP-SAGGCDEEISLFLYRGRVDKEIIM 221 (276)
Q Consensus 143 ~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~-spg~~~e~i~lfla~~~~~~~~i~ 221 (276)
..|++|||++|+| |++.+||+||++||||+.+.. +..+..+. ..+. ........+++|++......
T Consensus 27 ~~w~~PgG~ve~g-Es~~~aa~REl~EEtGl~~~~--~~~~~~~~------~~~~~~~~~~~~~~~~f~~~~~~~~---- 93 (130)
T cd03428 27 GHWDFPKGHVEPG-EDDLEAALRETEEETGITAEQ--LFIVLGFK------ETLNYQVRGKLKTVTYFLAELRPDV---- 93 (130)
T ss_pred CcCcCCcCCCCCC-CCHHHHHHHHHHHHHCCChhh--hhhhccce------eEEEccccCcceEEEEEEEEeCCCC----
Confidence 4699999999998 999999999999999999873 33321110 1111 11224456677777643111
Q ss_pred HhcCCCCCCCCCCceEEEEEEchhhHhhhcCChh
Q 023875 222 QLQGKETGLRDHGELIKVRVVPYRELWRTTPDAK 255 (276)
Q Consensus 222 ~~~g~~~g~~d~~E~i~v~wv~leel~~~i~d~k 255 (276)
.. ..+ +|..++.|++++++.+++....
T Consensus 94 -----~~-~~~-~E~~~~~W~~~~e~~~~~~~~~ 120 (130)
T cd03428 94 -----EV-KLS-EEHQDYRWLPYEEALKLLTYED 120 (130)
T ss_pred -----cc-ccc-cceeeEEeecHHHHHHHcCchh
Confidence 11 123 7889999999999999886444
No 46
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.46 E-value=6.3e-13 Score=115.03 Aligned_cols=108 Identities=19% Similarity=0.157 Sum_probs=73.6
Q ss_pred EEEEEEEecceeeeccCeeeeeCCCCe---EE-EeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCc
Q 023875 117 RIGFLKFKADIFCKETGQKVRVPTGRV---IL-ELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTG 192 (276)
Q Consensus 117 ~V~vl~~~~d~~~~~~~rq~R~~~g~~---~w-ElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~ 192 (276)
.+.++.++.++.+ .+ |+|.+.+.+ .| .+|||++++| |++.+||+|||+||||+.+. .+..++.
T Consensus 39 ~~~v~v~~~~g~i-LL--~~R~~~~~~~pg~~~~~pGG~ve~G-Es~~eAA~REL~EEtGl~~~--~~~~~~~------- 105 (180)
T PRK15393 39 ATYIVVHDGMGKI-LV--QRRTETKDFLPGMLDATAGGVVQAG-EQLLESARREAEEELGIAGV--PFAEHGQ------- 105 (180)
T ss_pred EEEEEEECCCCeE-EE--EEeCCCCCCCCCcccccCCCcCCCC-CCHHHHHHHHHHHHHCCCCc--cceecee-------
Confidence 4555556655554 23 557655433 24 6899999998 99999999999999999875 4555542
Q ss_pred eeeecCCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhc
Q 023875 193 CKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT 251 (276)
Q Consensus 193 ~~~y~spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i 251 (276)
++.+........++|.+.. . +.. ..+++|..+++|++++++.+++
T Consensus 106 --~~~~~~~~~~~~~~f~~~~--~--------~~~--~~~~~E~~~~~W~~~~el~~~~ 150 (180)
T PRK15393 106 --FYFEDENCRVWGALFSCVS--H--------GPF--ALQEEEVSEVCWMTPEEITARC 150 (180)
T ss_pred --EEecCCCceEEEEEEEEEe--C--------CCC--CCChHHeeEEEECCHHHHhhhh
Confidence 4444444444455665532 1 111 3467899999999999999875
No 47
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.46 E-value=7.2e-13 Score=106.89 Aligned_cols=96 Identities=22% Similarity=0.234 Sum_probs=62.6
Q ss_pred CeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeecCCCc-cCeEEEEEEEEEeehhhHH
Q 023875 142 RVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGG-CDEEISLFLYRGRVDKEII 220 (276)
Q Consensus 142 ~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~spg~-~~e~i~lfla~~~~~~~~i 220 (276)
...|++|||++|.| |++.+||.||++||||+++.. ...++.. ..+|...+. .+..+++|+++...... .
T Consensus 22 ~~~w~lPgG~ve~g-Es~~~aa~RE~~EEtGl~~~~--~~~~~~~------~~~~~~~~~~~~~~~~~f~~~~~~~~~-~ 91 (126)
T cd04688 22 ETFYRPPGGGIEFG-ESSEEALIREFKEELGLKIEI--TRLLGVV------ENIFTYNGKPGHEIEFYYLVTLLDESL-Y 91 (126)
T ss_pred CCeEECCCccccCC-CCHHHHHHHHHHHHhCCceec--ceeeEEE------EEeeccCCcccEEEEEEEEEEeCCCcc-c
Confidence 45799999999998 999999999999999999863 3333321 013333333 44556677776432110 0
Q ss_pred HHhcCCCCCCCCCCceEEEEEEchhhHhhh
Q 023875 221 MQLQGKETGLRDHGELIKVRVVPYRELWRT 250 (276)
Q Consensus 221 ~~~~g~~~g~~d~~E~i~v~wv~leel~~~ 250 (276)
+.......+++|..++.|++++++..+
T Consensus 92 ---~~~~~~~~~~~e~~~~~W~~~~~l~~~ 118 (126)
T cd04688 92 ---QQDIEILEEEGEKIVFRWIPIDELKEI 118 (126)
T ss_pred ---ccccceeccCCCEEEEEEeeHHHcccC
Confidence 000000125678999999999998754
No 48
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.46 E-value=1e-12 Score=105.86 Aligned_cols=89 Identities=19% Similarity=0.166 Sum_probs=59.6
Q ss_pred eEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeecCCCccC-eEEEEEEEEEeehhhHHH
Q 023875 143 VILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCD-EEISLFLYRGRVDKEIIM 221 (276)
Q Consensus 143 ~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~spg~~~-e~i~lfla~~~~~~~~i~ 221 (276)
..|++|||++|+| |++.+||+||++||||+++. .+..++.. ...|..++... ...++|++.......
T Consensus 23 ~~~~lPGG~ve~g-Et~~~aa~REl~EEtGl~~~--~~~~l~~~------~~~~~~~~~~~~~~~~~f~~~~~~~~~--- 90 (125)
T cd04689 23 PHYFLPGGHVEPG-ETAENALRRELQEELGVAVS--DGRFLGAI------ENQWHEKGVRTHEINHIFAVESSWLAS--- 90 (125)
T ss_pred CCEECCCCcCCCC-CCHHHHHHHHHHHHhCceee--ccEEEEEE------eeeeccCCceEEEEEEEEEEEcccccc---
Confidence 4799999999998 99999999999999999986 34444321 12344444333 344566665431110
Q ss_pred HhcCCCCCCCCCCceEEEEEEchhhHh
Q 023875 222 QLQGKETGLRDHGELIKVRVVPYRELW 248 (276)
Q Consensus 222 ~~~g~~~g~~d~~E~i~v~wv~leel~ 248 (276)
. .....++|..+++|++++++.
T Consensus 91 ---~--~~~~~~~e~~~~~W~~~~el~ 112 (125)
T cd04689 91 ---D--GPPQADEDHLSFSWVPVSDLS 112 (125)
T ss_pred ---c--CCccCccceEEEEEccHHHcc
Confidence 0 112345678999999999964
No 49
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.45 E-value=6.1e-13 Score=105.42 Aligned_cols=101 Identities=18% Similarity=0.157 Sum_probs=69.1
Q ss_pred EEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeec
Q 023875 118 IGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFP 197 (276)
Q Consensus 118 V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~ 197 (276)
.++|....+ .+ .++++.+ ..|++|||++++| |++.+||.||++||||+.+. .+..++. +.
T Consensus 3 a~~i~~~~~-~v-Llv~r~~-----~~w~~PgG~ve~g-E~~~~aa~REl~EEtGl~~~--~~~~~~~---------~~- 62 (112)
T cd04667 3 ATVICRRGG-RV-LLVRKSG-----SRWALPGGKIEPG-ETPLQAARRELQEETGLQGL--DLLYLFH---------VD- 62 (112)
T ss_pred eEEEEecCC-EE-EEEEcCC-----CcEeCCCCcCCCC-CCHHHHHHHHHHHHhCCccc--ceEEEEE---------Ee-
Confidence 345555433 33 3555321 4699999999998 99999999999999999985 5666652 22
Q ss_pred CCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcC
Q 023875 198 SAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 252 (276)
Q Consensus 198 spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~ 252 (276)
. .....++|++..... .. ....+|..+++|++++++.++..
T Consensus 63 ~---~~~~~~~f~~~~~~~---------~~--~~~~~e~~~~~W~~~~el~~~~~ 103 (112)
T cd04667 63 G---GSTRHHVFVASVPPS---------AQ--PKPSNEIADCRWLSLDALGDLNA 103 (112)
T ss_pred C---CCEEEEEEEEEcCCc---------CC--CCCchheeEEEEecHHHhhhccc
Confidence 1 234556777653211 11 23567889999999999988765
No 50
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.44 E-value=6.4e-13 Score=109.53 Aligned_cols=113 Identities=22% Similarity=0.182 Sum_probs=68.4
Q ss_pred EEEEEEEecc-eeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceee
Q 023875 117 RIGFLKFKAD-IFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKF 195 (276)
Q Consensus 117 ~V~vl~~~~d-~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~ 195 (276)
.++++.++.+ ..+ .++++.+ . ..|.+|||++|+| |++.+||+||++||||+++.. +..++-.. + ...
T Consensus 4 ~~~~~v~~~~~~~v-LLv~r~~--~--~~w~lPgG~ve~g-E~~~~aa~REl~EEtGl~~~~--~~~~~~~~-~---~~~ 71 (138)
T cd03674 4 TASAFVVNPDRGKV-LLTHHRK--L--GSWLQPGGHIDPD-ESLLEAALRELREETGIELLG--LRPLSVLV-D---LDV 71 (138)
T ss_pred EEEEEEEeCCCCeE-EEEEEcC--C--CcEECCceecCCC-CCHHHHHHHHHHHHHCCCccc--ceeccccc-c---cee
Confidence 4666777765 444 4666433 2 3689999999998 999999999999999998763 33221000 0 012
Q ss_pred ecCCCccC------e-EEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhc
Q 023875 196 FPSAGGCD------E-EISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT 251 (276)
Q Consensus 196 y~spg~~~------e-~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i 251 (276)
+...+..+ . ...+|++... .. ... ..+++|..++.|++++++.++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~y~~~~~-~~--------~~~-~~~~~E~~~~~W~~~~el~~~~ 124 (138)
T cd03674 72 HPIDGHPKRGVPGHLHLDLRFLAVAP-AD--------DVA-PPKSDESDAVRWFPLDELASLE 124 (138)
T ss_pred EeecCCCCCCCCCcEEEEEEEEEEcc-Cc--------ccc-CCCCCcccccEEEcHHHhhhcc
Confidence 22222221 1 2224665432 11 111 1256788999999999997653
No 51
>PLN02325 nudix hydrolase
Probab=99.44 E-value=1.1e-12 Score=109.43 Aligned_cols=114 Identities=19% Similarity=0.259 Sum_probs=67.4
Q ss_pred EEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeec
Q 023875 118 IGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFP 197 (276)
Q Consensus 118 V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~ 197 (276)
|+++.++.+ .+ .+++. +.+.+...|.+|||++|.| |++.+||+||++||||+++...++..+.. ..+.
T Consensus 12 v~~vi~~~~-~v-LL~rr-~~~~~~g~W~lPGG~ve~g-Es~~~aa~REv~EEtGl~v~~~~~l~~~~--------~~~~ 79 (144)
T PLN02325 12 VVVFLLKGN-SV-LLGRR-RSSIGDSTFALPGGHLEFG-ESFEECAAREVKEETGLEIEKIELLTVTN--------NVFL 79 (144)
T ss_pred EEEEEEcCC-EE-EEEEe-cCCCCCCeEECCceeCCCC-CCHHHHHHHHHHHHHCCCCcceEEEEEec--------ceee
Confidence 344444443 33 34442 2233456899999999998 99999999999999999987433333221 1232
Q ss_pred CCCccCeEEEEEE-EEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhc
Q 023875 198 SAGGCDEEISLFL-YRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT 251 (276)
Q Consensus 198 spg~~~e~i~lfl-a~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i 251 (276)
.++.....+.+|+ +... ... .. ....+.+|..+++|++++++...+
T Consensus 80 ~~~~~~~~i~~~f~~~~~-~~~------~~-~~~~e~~e~~~~~W~~~d~Lp~~~ 126 (144)
T PLN02325 80 EEPKPSHYVTVFMRAVLA-DPS------QV-PQNLEPEKCYGWDWYEWDNLPEPL 126 (144)
T ss_pred cCCCCcEEEEEEEEEEEC-CCC------CC-CCcCCchhcCceEEEChHHCChhh
Confidence 2333333444443 3321 111 00 112345567889999999998754
No 52
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.43 E-value=1.1e-12 Score=106.10 Aligned_cols=114 Identities=20% Similarity=0.245 Sum_probs=71.9
Q ss_pred EEEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeee
Q 023875 117 RIGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFF 196 (276)
Q Consensus 117 ~V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y 196 (276)
.++++.++.+..+ .+. .|... ..|.||||++++| |++.+||.||++||||+++. ....++.+.. ...|
T Consensus 9 ~~~~~v~~~~~~v-LL~--~r~~~--~~w~~PgG~v~~g-Et~~~aa~REl~EE~Gi~~~--~~~~~~~~~~----~~~~ 76 (132)
T cd04677 9 GAGVILLNEQGEV-LLQ--KRSDT--GDWGLPGGAMELG-ESLEETARRELKEETGLEVE--ELELLGVYSG----KEFY 76 (132)
T ss_pred ceEEEEEeCCCCE-EEE--EecCC--CcEECCeeecCCC-CCHHHHHHHHHHHHhCCeee--eeEEEEEecC----Ccee
Confidence 4566667765554 243 35544 4699999999998 99999999999999999997 3344321100 0122
Q ss_pred c--CCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcC
Q 023875 197 P--SAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 252 (276)
Q Consensus 197 ~--spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~ 252 (276)
. ..+.....+.+|++..... +.. ..+.+|..+++|++++++.+++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~--------~~~--~~~~~e~~~~~W~~~~e~~~~~~ 124 (132)
T cd04677 77 VKPNGDDEQYIVTLYYVTKVFG--------GKL--VPDGDETLELKFFSLDELPELIN 124 (132)
T ss_pred ecCCCCcEEEEEEEEEEEeccC--------Ccc--cCCCCceeeEEEEChhHCccchh
Confidence 2 2232333444455443211 111 24667889999999999988764
No 53
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.43 E-value=1.4e-12 Score=111.08 Aligned_cols=91 Identities=15% Similarity=0.168 Sum_probs=59.0
Q ss_pred CCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCccccc--ceeeeccccCCCCceeeecC-CCc---c-CeEEEEEEEEE
Q 023875 141 GRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLE--DMIDLTAFLYPSTGCKFFPS-AGG---C-DEEISLFLYRG 213 (276)
Q Consensus 141 g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~--~l~~L~~l~~~~~~~~~y~s-pg~---~-~e~i~lfla~~ 213 (276)
....|+||||+||.| |++++||+||++||||+.+... .+..+.+ .+|.. +.. . +..+.+|.++.
T Consensus 41 ~~g~W~lPGG~VE~G-Et~~~Aa~REl~EEtGl~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~f~~~~ 111 (159)
T PRK15434 41 AQGYWFVPGGRVQKD-ETLEAAFERLTMAELGLRLPITAGQFYGVWQ--------HFYDDNFSGTDFTTHYVVLGFRLRV 111 (159)
T ss_pred CCCcEECCceecCCC-CCHHHHHHHHHHHHHCCccccccceEEEEEE--------eecccccCCCccceEEEEEEEEEEe
Confidence 346899999999998 9999999999999999997421 2222211 12221 111 1 12333454543
Q ss_pred eehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhc
Q 023875 214 RVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT 251 (276)
Q Consensus 214 ~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i 251 (276)
. . +.. ..+++|..+++|++++++....
T Consensus 112 ~--~-------g~~--~~~~~E~~~~~W~~~~el~~~~ 138 (159)
T PRK15434 112 A--E-------EDL--LLPDEQHDDYRWLTPDALLASD 138 (159)
T ss_pred c--C-------Ccc--cCChHHeeEEEEEeHHHhhhcc
Confidence 2 1 111 2356689999999999998754
No 54
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.42 E-value=1.7e-12 Score=104.47 Aligned_cols=109 Identities=17% Similarity=0.137 Sum_probs=65.0
Q ss_pred EEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeec
Q 023875 118 IGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFP 197 (276)
Q Consensus 118 V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~ 197 (276)
|+.+.++.+ .+ .++++.+ ...|++|||++|+| |++.+||+||++||||+.+....+..+... ..+.
T Consensus 5 v~~~i~~~~-~v-LL~~~~~----~~~w~~PGG~ve~g-Es~~~aa~REl~EEtG~~~~~~~~~~~~~~-------~~~~ 70 (123)
T cd04672 5 VRAAIFKDG-KI-LLVREKS----DGLWSLPGGWADVG-LSPAENVVKEVKEETGLDVKVRKLAAVDDR-------NKHH 70 (123)
T ss_pred EEEEEEECC-EE-EEEEEcC----CCcEeCCccccCCC-CCHHHHHHHHHHHHhCCeeeEeEEEEEecc-------cccc
Confidence 334444443 33 3555443 35799999999998 999999999999999998853333322210 0011
Q ss_pred CCCccCeEE-EEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcC
Q 023875 198 SAGGCDEEI-SLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 252 (276)
Q Consensus 198 spg~~~e~i-~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~ 252 (276)
.++.....+ .+|++... .. . ....+|..+++|++++++.++..
T Consensus 71 ~~~~~~~~~~~~f~~~~~-~~--------~---~~~~~E~~~~~W~~~~el~~l~~ 114 (123)
T cd04672 71 PPPQPYQVYKLFFLCEIL-GG--------E---FKPNIETSEVGFFALDDLPPLSE 114 (123)
T ss_pred CCCCceEEEEEEEEEEec-CC--------c---ccCCCceeeeEEECHHHCccccc
Confidence 111111122 33444432 11 1 12347888999999999987654
No 55
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.40 E-value=1.5e-12 Score=106.54 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=64.7
Q ss_pred EEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeec
Q 023875 118 IGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFP 197 (276)
Q Consensus 118 V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~ 197 (276)
|+.|.+..+.+ .+++++|. ..|+||||.+|+| |++.+||+||++||||+.+.. ....++.. ..+++
T Consensus 3 ~~~ii~~~~~v--LLv~~~~~----~~w~lPgG~ve~g-Et~~~aa~REl~EEtGl~~~~-~~~~l~~~------~~~~~ 68 (131)
T cd04686 3 VRAIILQGDKI--LLLYTKRY----GDYKFPGGGVEKG-EDHIEGLIRELQEETGATNIR-VIEKFGTY------TERRP 68 (131)
T ss_pred EEEEEEECCEE--EEEEEcCC----CcEECccccCCCC-CCHHHHHHHHHHHHHCCcccc-cceEEEEE------Eeecc
Confidence 45555554433 36665553 2699999999998 999999999999999998731 22233321 01122
Q ss_pred C--CC--ccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCc---eEEEEEEchhhHhhh
Q 023875 198 S--AG--GCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGE---LIKVRVVPYRELWRT 250 (276)
Q Consensus 198 s--pg--~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E---~i~v~wv~leel~~~ 250 (276)
. +. ......++|++...... +. . ..++.| ...+.|++++++.+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~-~~~~~e~~~~~~~~W~~~~ea~~~ 119 (131)
T cd04686 69 WRKPDADIFHMISYYYLCEVDAEL-------GA-Q-QLEDYEAELGMKPIWINIHEAIEH 119 (131)
T ss_pred ccCCCCceeEEEEEEEEEEEcCCc-------CC-c-ccchhhHhcCCCcEEecHHHHHHh
Confidence 1 11 12233456666543211 11 1 123333 256899999999775
No 56
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.40 E-value=2.3e-12 Score=102.36 Aligned_cols=107 Identities=20% Similarity=0.227 Sum_probs=68.3
Q ss_pred EEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeec
Q 023875 118 IGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFP 197 (276)
Q Consensus 118 V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~ 197 (276)
++++.+..++.. .+++ |. +...|++|||++++| |++.+||+||++||||+.+....+..++.+.. ..+.
T Consensus 3 ~~~~v~~~~~~v-Ll~~--r~--~~~~w~~PgG~ve~~-Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~-----~~~~ 71 (118)
T cd04690 3 AAALILVRDGRV-LLVR--KR--GTDVFYLPGGKIEAG-ETPLQALIRELSEELGLDLDPDSLEYLGTFRA-----PAAN 71 (118)
T ss_pred EEEEEEecCCeE-EEEE--EC--CCCcEECCCCccCCC-CCHHHHHHHHHHHHHCCccChhheEEEEEEec-----cccc
Confidence 344445555544 3554 22 234699999999998 99999999999999999987433777763200 0001
Q ss_pred CCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhh
Q 023875 198 SAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWR 249 (276)
Q Consensus 198 spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~ 249 (276)
.++ ....+++|++.... . ....+|..+++|++++++..
T Consensus 72 ~~~-~~~~~~~f~~~~~~--~-----------~~~~~e~~~~~W~~~~e~~~ 109 (118)
T cd04690 72 EPG-VDVRATVYVAELTG--E-----------PVPAAEIEEIRWVDYDDPAD 109 (118)
T ss_pred CCC-cEEEEEEEEEcccC--C-----------cCCCchhhccEEecHHHccc
Confidence 111 23456667665321 1 23456888999999999743
No 57
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.39 E-value=1.7e-12 Score=104.01 Aligned_cols=111 Identities=20% Similarity=0.177 Sum_probs=66.6
Q ss_pred EEEEEEecceeeeccCeeeeeC-CCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeee
Q 023875 118 IGFLKFKADIFCKETGQKVRVP-TGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFF 196 (276)
Q Consensus 118 V~vl~~~~d~~~~~~~rq~R~~-~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y 196 (276)
|+++..+.++.+ .+.+..+.+ ..+..|++|+|++++| |++.+||.||++||||+.+.. ...++. ...+
T Consensus 4 v~~vv~~~~~~i-Ll~kr~~~~~~~~g~w~~PgG~ve~g-Es~~~aa~RE~~EE~Gl~~~~--~~~~~~-------~~~~ 72 (129)
T cd04699 4 VAALIVKDVGRI-LILKRSKDERTAPGKWELPGGKVEEG-ETFEEALKREVYEETGLTVTP--FLRYPS-------TVTH 72 (129)
T ss_pred EEEEEECCCCcE-EEEEecCCCCCCCCcCcCCccCccCC-CCHHHHHHHHHHHhhCcEEEe--eeeeeE-------EEEE
Confidence 445555553444 355533333 2356899999999998 999999999999999999863 332221 0122
Q ss_pred cCCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhc
Q 023875 197 PSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT 251 (276)
Q Consensus 197 ~spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i 251 (276)
...+.......+|.+... . + . ..+.+|..+++|++++++..+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~-~--------~-~--~~~~~e~~~~~w~~~~el~~~~ 115 (129)
T cd04699 73 EDSGVYNVIYLVFVCEAL-S--------G-A--VKLSDEHEEYAWVTLEELAILK 115 (129)
T ss_pred cCCCEEEEEEEEEEeeec-C--------C-c--ccCChhheEEEEecHHHhhhhh
Confidence 222212222233443321 1 1 0 2345678899999999985544
No 58
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.38 E-value=2.7e-12 Score=102.43 Aligned_cols=116 Identities=18% Similarity=0.104 Sum_probs=67.8
Q ss_pred EEEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeee
Q 023875 117 RIGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFF 196 (276)
Q Consensus 117 ~V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y 196 (276)
.|+++.++.++.+ .+.+ |... ..|++|+|+++.| |++.+||+||++||||+++...+ .++.+..... ...|
T Consensus 4 ~v~~ii~~~~~~v-Ll~~--r~~~--~~w~lPgG~v~~~-E~~~~aa~REl~EE~Gl~~~~~~--~~~~~~~~~~-~~~~ 74 (129)
T cd04676 4 GVTAVVRDDEGRV-LLIR--RSDN--GLWALPGGAVEPG-ESPADTAVREVREETGLDVEVTG--LVGIYTGPVH-VVTY 74 (129)
T ss_pred eEEEEEECCCCeE-EEEE--ecCC--CcEECCeeccCCC-CCHHHHHHHHHHHHhCceeEeeE--EEEEeecccc-eeec
Confidence 3555556654444 3444 3333 5699999999998 99999999999999999986322 2211000000 0012
Q ss_pred cCCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcC
Q 023875 197 PSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 252 (276)
Q Consensus 197 ~spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~ 252 (276)
++.........+|++... .. .. ..+.+|..+++|++++++..+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~-~~--------~~--~~~~~e~~~~~w~~~~el~~~~~ 119 (129)
T cd04676 75 PNGDVRQYLDITFRCRVV-GG--------EL--RVGDDESLDVAWFDPDGLPPLLM 119 (129)
T ss_pred CCCCcEEEEEEEEEEEee-CC--------ee--cCCCCceeEEEEEChhhCccccC
Confidence 211112333344544332 11 11 13567888999999999987643
No 59
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.36 E-value=3.7e-12 Score=108.29 Aligned_cols=117 Identities=17% Similarity=0.104 Sum_probs=73.2
Q ss_pred EEEEEEEecceeeeccCeeeeeCCC---CeEEEec-eeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCc
Q 023875 117 RIGFLKFKADIFCKETGQKVRVPTG---RVILELP-AGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTG 192 (276)
Q Consensus 117 ~V~vl~~~~d~~~~~~~rq~R~~~g---~~~wElP-aG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~ 192 (276)
.|+++.++.++.+ .+.+ |.... ...|++| ||++|+| |++++||+||++||||+.+....+. +..+.+
T Consensus 32 ~v~v~i~~~~~~i-Ll~k--R~~~~~~~Pg~w~~~~gG~ie~G-Et~~eaa~REl~EEtGl~~~~~~~~-~~~~~~---- 102 (165)
T cd02885 32 AFSVFLFNSKGRL-LLQR--RALSKYTFPGLWTNTCCSHPLPG-EGVKDAAQRRLREELGITGDLLELV-LPRFRY---- 102 (165)
T ss_pred EEEEEEEcCCCcE-EEEe--ccCCCccCCCcccccccCCCCCC-CCHHHHHHHHHHHHhCCCccchhhc-cceEEE----
Confidence 4566666665554 2443 43322 3478886 8999998 9999999999999999998643332 122100
Q ss_pred eeeecCCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcCCh
Q 023875 193 CKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDA 254 (276)
Q Consensus 193 ~~~y~spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~d~ 254 (276)
...++....+.+..++|.+... . .. ..+.+|..+++|++++++.+++.++
T Consensus 103 ~~~~~~~~~~~~i~~~f~~~~~--~--------~~--~~~~~Ev~~~~w~~~~el~~~~~~~ 152 (165)
T cd02885 103 RAPDDGGLVEHEIDHVFFARAD--V--------TL--IPNPDEVSEYRWVSLEDLKELVAAA 152 (165)
T ss_pred EEEcCCCceeeEEEEEEEEEeC--C--------CC--CCCccceeEEEEECHHHHHHHHHhC
Confidence 0011111223334566665532 1 11 2366788899999999999998744
No 60
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.36 E-value=6.8e-12 Score=101.75 Aligned_cols=101 Identities=17% Similarity=0.038 Sum_probs=72.2
Q ss_pred EEEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeee
Q 023875 117 RIGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFF 196 (276)
Q Consensus 117 ~V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y 196 (276)
+|.||+++.+... ++++. ...|++|||++|.| |++.+||+||+.||||+.+. .+..++. +.
T Consensus 2 ~v~vi~~~~~~vL--l~~~~-----~~~w~lPgG~ve~g-E~~~~aa~REl~EE~G~~~~--~~~~l~~---------~~ 62 (118)
T cd04665 2 SVLVICFYDDGLL--LVRHK-----DRGWEFPGGHVEPG-ETIEEAARREVWEETGAELG--SLTLVGY---------YQ 62 (118)
T ss_pred EEEEEEEECCEEE--EEEeC-----CCEEECCccccCCC-CCHHHHHHHHHHHHHCCccC--ceEEEEE---------EE
Confidence 5777777766543 55542 23699999999998 99999999999999999995 7888873 33
Q ss_pred cCCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhH
Q 023875 197 PSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYREL 247 (276)
Q Consensus 197 ~spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel 247 (276)
..++.......+|++....... .....|.....|++.+..
T Consensus 63 ~~~~~~~~~~~~y~a~~~~~~~-----------~~~~~E~~~~~~~~~~~~ 102 (118)
T cd04665 63 VDLFESGFETLVYPAVSAQLEE-----------KASYLETDGPVLFKNEPE 102 (118)
T ss_pred ecCCCCcEEEEEEEEEEEeccc-----------ccccccccCcEEeccCCc
Confidence 3334445566778876543211 225578888999986654
No 61
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.36 E-value=7.9e-12 Score=101.04 Aligned_cols=113 Identities=20% Similarity=0.233 Sum_probs=68.0
Q ss_pred EEEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeee
Q 023875 117 RIGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFF 196 (276)
Q Consensus 117 ~V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y 196 (276)
+|+++.++.++.+ .+.+... +..+..|.+|||+++.| |++.+||+||++||||+++. .+..++.. ...+
T Consensus 4 ~v~~ii~~~~~~i-Ll~~r~~-~~~~~~w~~PGG~ve~g-Et~~~Aa~REl~EE~Gl~~~--~~~~~~~~------~~~~ 72 (129)
T cd04678 4 GVGVFVLNPKGKV-LLGKRKG-SHGAGTWALPGGHLEFG-ESFEECAAREVLEETGLHIE--NVQFLTVT------NDVF 72 (129)
T ss_pred EEEEEEECCCCeE-EEEeccC-CCCCCeEECCcccccCC-CCHHHHHHHHHHHHhCCccc--ceEEEEEE------eEEe
Confidence 3556666654544 3444221 22456899999999998 99999999999999999986 34444320 0122
Q ss_pred cCCCccCeEEEE-EEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhh
Q 023875 197 PSAGGCDEEISL-FLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRT 250 (276)
Q Consensus 197 ~spg~~~e~i~l-fla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~ 250 (276)
...+ ...+.+ |.+....... .....+.+|..+++|++++++.++
T Consensus 73 ~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~~e~~~~~W~~~~~l~~~ 117 (129)
T cd04678 73 EEEG--KHYVTIFVKAEVDDGEA--------EPNKMEPEKCEGWEWFDWEELPSV 117 (129)
T ss_pred CCCC--cEEEEEEEEEEeCCCCc--------ccCCCCCceeCceEEeCHHHCCCc
Confidence 2222 223333 4443321110 000124567788999999999875
No 62
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.34 E-value=8.5e-12 Score=108.13 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=73.6
Q ss_pred EEEEEEEecceeeeccCeeeeeCC---CCeEEEec-eeecCCCCCCHHHHHHHHHHHHhCCcccccceeee-ccccCCCC
Q 023875 117 RIGFLKFKADIFCKETGQKVRVPT---GRVILELP-AGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDL-TAFLYPST 191 (276)
Q Consensus 117 ~V~vl~~~~d~~~~~~~rq~R~~~---g~~~wElP-aG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L-~~l~~~~~ 191 (276)
+|+++.++.++.+ .+++ |... -...|.+| ||++++| |++++||+||++||||+++. ++..+ +.+.
T Consensus 36 av~v~i~~~~g~v-LL~r--R~~~~~~~PG~w~~~~gG~ve~G-Et~~~aa~REl~EEtGl~~~--~~~~~~~~~~---- 105 (184)
T PRK03759 36 AFSCYLFDADGRL-LVTR--RALSKKTWPGVWTNSCCGHPQPG-ESLEDAVIRRCREELGVEIT--DLELVLPDFR---- 105 (184)
T ss_pred EEEEEEEcCCCeE-EEEE--ccCCCCCCCCcccccccCCCCCC-CCHHHHHHHHHHHHhCCCcc--ccccccceEE----
Confidence 4666667766554 3444 3211 11357775 8999998 99999999999999999985 33322 1100
Q ss_pred ceeeecCCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcCCh
Q 023875 192 GCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDA 254 (276)
Q Consensus 192 ~~~~y~spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~d~ 254 (276)
+...+++....++.+++|++... . .. ..+.+|..++.|++++++.+++.++
T Consensus 106 ~~~~~~~~~~~~~~~~vf~~~~~--~--------~~--~~~~~Ev~~~~W~~~~el~~~i~~~ 156 (184)
T PRK03759 106 YRATDPNGIVENEVCPVFAARVT--S--------AL--QPNPDEVMDYQWVDPADLLRAVDAT 156 (184)
T ss_pred EEEecCCCceeeEEEEEEEEEEC--C--------CC--CCChhHeeeEEEECHHHHHHHHHhC
Confidence 00011222223456677887643 1 11 3466889999999999999998755
No 63
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.33 E-value=9.3e-12 Score=104.07 Aligned_cols=124 Identities=15% Similarity=0.119 Sum_probs=75.1
Q ss_pred EEEEEEEecceeeeccCeeeeeC-CCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccc--eeeeccccCCCCce
Q 023875 117 RIGFLKFKADIFCKETGQKVRVP-TGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLED--MIDLTAFLYPSTGC 193 (276)
Q Consensus 117 ~V~vl~~~~d~~~~~~~rq~R~~-~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~--l~~L~~l~~~~~~~ 193 (276)
.|++|.++.+..+ .+.|+.+.. ..+..|++|+|++++| |++.+||+||++||||+.+.... +..++.. .
T Consensus 3 ~v~viv~~~~~~v-Ll~rr~~~~~~~~g~w~~PgG~v~~~-E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~------~ 74 (143)
T cd04694 3 GVAVLLQSSDQKL-LLTRRASSLRIFPNVWVPPGGHVELG-ENLLEAGLRELNEETGLTLDPIDKSWQVLGLW------E 74 (143)
T ss_pred EEEEEEEcCCCEE-EEEEECCCCCCCCCeEECcccccCCC-CCHHHHHHHHHHHHHCCCccccccceeEEeee------c
Confidence 3667777766665 466644432 3456899999999998 99999999999999999886321 2333210 0
Q ss_pred eeecC---CCcc-CeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcC
Q 023875 194 KFFPS---AGGC-DEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 252 (276)
Q Consensus 194 ~~y~s---pg~~-~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~ 252 (276)
..|+. .+.. .+.+.+|++......... ....-..+.+|..+++|++++++.+++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~----~~~~~~~~~~Ev~~~~Wv~~~~a~~~~~ 133 (143)
T cd04694 75 SVYPPLLSRGLPKRHHIVVYILVKSSETHQQ----LQARLQPDPNEVSAAAWLDKSLAKAVVS 133 (143)
T ss_pred cccccccCCCcccceeEEEEEEEEecccccc----ccccccCChhhccceEeeCHHHHHHHHH
Confidence 01221 1221 234444544322211000 0000124568999999999999999875
No 64
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.32 E-value=1.9e-11 Score=100.37 Aligned_cols=99 Identities=17% Similarity=0.059 Sum_probs=64.1
Q ss_pred CeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeecCCCc--cCeEEEEEE
Q 023875 133 GQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGG--CDEEISLFL 210 (276)
Q Consensus 133 ~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~spg~--~~e~i~lfl 210 (276)
+-++|++.+. |+||||++|+| |++.+||+||++||||+.+..... .++ . ..++. .+..+++++
T Consensus 16 ll~~r~~~~~--~~lPgG~ve~~-E~~~~aa~Rel~EEtGl~~~~~~~-~~~----------~-~~~~~~~~~~~~~l~~ 80 (126)
T cd04663 16 LLVFEHPLAG--FQIVKGTVEPG-ETPEAAALRELQEESGLPSFLSDY-ILH----------V-WERRFYQKRHFWHLTL 80 (126)
T ss_pred EEEEEcCCCc--EECCCccCCCC-CCHHHHHHHHHHHHHCCeeeeeee-cce----------e-eeCCEeeccEEEEEEE
Confidence 4456777643 89999999998 999999999999999999731111 111 1 12222 455666666
Q ss_pred EEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhh
Q 023875 211 YRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRT 250 (276)
Q Consensus 211 a~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~ 250 (276)
++...+.. ..|.+.. ..++++.+++.|++++++...
T Consensus 81 ~~~~~~~~--~~~~~~~--~~~E~~~i~~~Wv~l~~~~~~ 116 (126)
T cd04663 81 CEVDQDLP--DSWVHFV--QDDGGHEFRFFWVDLASCLDE 116 (126)
T ss_pred EEecCCCc--ccccCcc--cCCCCceEEEEEEcccccccc
Confidence 65432211 1233332 235777889999999998554
No 65
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.31 E-value=1.9e-11 Score=100.34 Aligned_cols=89 Identities=20% Similarity=0.241 Sum_probs=57.5
Q ss_pred CeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeecCCCccCeEEEEEEEEEeehhhHHH
Q 023875 142 RVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIM 221 (276)
Q Consensus 142 ~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~spg~~~e~i~lfla~~~~~~~~i~ 221 (276)
...|++|||++|.| |++.+||+||++||||+.+. ..+..+.. ++. ++ ...+++|+++...+..++.
T Consensus 32 ~~~W~lPgG~ie~~-E~~~~aA~REl~EEtGl~~~-~~~~~l~~---------~~~-~~--~~~v~~fl~~~~~d~~~~~ 97 (126)
T cd04662 32 LGAWSIPKGEYTEG-EDPLLAAKREFSEETGFCVD-GPFIDLGS---------LKQ-SG--GKVVHAWAVEADLDITDIK 97 (126)
T ss_pred CCEEECCcccCCCC-cCHHHHHHHHHHHHhCCcce-eeEEeEEE---------EEC-CC--CeEEEEEEEEecCChhHeE
Confidence 35799999999998 99999999999999999986 34555542 322 22 2366777776554433221
Q ss_pred H--h----cCCCCCCCCCCceEEEEEEch
Q 023875 222 Q--L----QGKETGLRDHGELIKVRVVPY 244 (276)
Q Consensus 222 ~--~----~g~~~g~~d~~E~i~v~wv~l 244 (276)
. + ..........+|..++.|+++
T Consensus 98 ~~~f~~~~~~~~~~~~~~~e~~~~~w~~~ 126 (126)
T cd04662 98 SNTFEMEWPKGSGKMRKFPEVDRAGWFDI 126 (126)
T ss_pred EEEEEEEccCCCCccccCCccceeEeecC
Confidence 1 0 011111223578888999873
No 66
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.30 E-value=4.1e-11 Score=97.44 Aligned_cols=86 Identities=15% Similarity=0.133 Sum_probs=56.7
Q ss_pred CeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeecCCCccCeEEEEEEEEEeehhhHHH
Q 023875 142 RVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIM 221 (276)
Q Consensus 142 ~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~spg~~~e~i~lfla~~~~~~~~i~ 221 (276)
...|+||+|.+|+| |++.+||+||++||||+.+.... .++. ..+...+ ..-.+++|.+... .
T Consensus 29 ~g~w~~PgG~ve~g-E~~~~a~~RE~~EE~Gl~~~~~~--~~~~--------~~~~~~~-~~~~~~~~~~~~~-~----- 90 (135)
T PRK10546 29 AGLWEFAGGKVEPG-ESQPQALIRELREELGIEATVGE--YVAS--------HQREVSG-RRIHLHAWHVPDF-H----- 90 (135)
T ss_pred CCcEECCcccCCCC-CCHHHHHHHHHHHHHCCccccce--eEEE--------EEEecCC-cEEEEEEEEEEEe-c-----
Confidence 45899999999998 99999999999999999986432 2321 1221111 1223445544321 1
Q ss_pred HhcCCCCCCCCCCceEEEEEEchhhHhhhcC
Q 023875 222 QLQGKETGLRDHGELIKVRVVPYRELWRTTP 252 (276)
Q Consensus 222 ~~~g~~~g~~d~~E~i~v~wv~leel~~~i~ 252 (276)
+ .....|..+++|++++++.++..
T Consensus 91 ---~----~~~~~e~~~~~W~~~~el~~~~~ 114 (135)
T PRK10546 91 ---G----ELQAHEHQALVWCTPEEALRYPL 114 (135)
T ss_pred ---C----cccccccceeEEcCHHHcccCCC
Confidence 1 11234567899999999988643
No 67
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.28 E-value=4.8e-11 Score=94.18 Aligned_cols=103 Identities=21% Similarity=0.117 Sum_probs=66.7
Q ss_pred EecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeecCCCcc
Q 023875 123 FKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGC 202 (276)
Q Consensus 123 ~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~spg~~ 202 (276)
++.++.. .+.+..+.+.....|+||+|.++.+ |++.++|.||++||||+.+. ....++. ..+..+ ..
T Consensus 9 ~~~~~~~-Ll~~r~~~~~~~g~w~~p~G~~~~~-e~~~~~a~Re~~EE~g~~~~--~~~~~~~--------~~~~~~-~~ 75 (124)
T cd03425 9 IDDDGRI-LIAQRPAGKHLGGLWEFPGGKVEPG-ETPEQALVRELREELGIEVE--VGELLAT--------VEHDYP-DK 75 (124)
T ss_pred ECCCCEE-EEEEeCCCCCCCCeEeCCCcccCCC-CCHHHHHHHHHHHhhCcEEe--ccceEEE--------EEeeCC-CC
Confidence 4443443 3555444444566999999999998 99999999999999999986 3344442 122222 22
Q ss_pred CeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhc
Q 023875 203 DEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT 251 (276)
Q Consensus 203 ~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i 251 (276)
...+++|.+... . + .....|...+.|++++++.++.
T Consensus 76 ~~~~~~~~~~~~--~-------~----~~~~~e~~~~~W~~~~el~~~~ 111 (124)
T cd03425 76 RVTLHVFLVELW--S-------G----EPQLLEHQELRWVPPEELDDLD 111 (124)
T ss_pred eEEEEEEEEeee--C-------C----CcccccCceEEEeeHHHcccCC
Confidence 334555555432 1 1 1224567789999999998764
No 68
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.28 E-value=2.3e-11 Score=99.73 Aligned_cols=92 Identities=17% Similarity=0.152 Sum_probs=60.0
Q ss_pred CeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeecCCCc------cCeEEEEEEEEEee
Q 023875 142 RVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGG------CDEEISLFLYRGRV 215 (276)
Q Consensus 142 ~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~spg~------~~e~i~lfla~~~~ 215 (276)
...|+||+|++|+| |++.+||.||++||||+.+.. ..++... .....|..+.. ....+++|.+...
T Consensus 25 ~g~W~fPgG~ve~g-Et~~eaa~REl~EEtGl~v~~---~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~- 96 (132)
T cd04661 25 QNHWILPQGKREEG-ETLRQTAERTLKELCGNNLKA---KFYGNAP---VGFYKYKYPKAVRNEGIVGAKVFFFKARYM- 96 (132)
T ss_pred CCeeECCcccccCC-CCHHHHHHHHHHHhhCCCceE---EEEEecC---cEEEEEecCcccccccCcccEEEEEEEEEe-
Confidence 35799999999998 999999999999999998752 2221100 00012222211 2235666766543
Q ss_pred hhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcC
Q 023875 216 DKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 252 (276)
Q Consensus 216 ~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~ 252 (276)
. |. .....|..++.|++++++.+++.
T Consensus 97 ~--------g~---~~~~~e~~~~~W~~~~el~~~l~ 122 (132)
T cd04661 97 S--------GQ---FELSQNQVDFKWLAKEELQKYLN 122 (132)
T ss_pred c--------Cc---cccCCCcceeEecCHHHHHhhcC
Confidence 1 11 12236788999999999998764
No 69
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.26 E-value=4.5e-11 Score=93.27 Aligned_cols=109 Identities=25% Similarity=0.272 Sum_probs=69.9
Q ss_pred EEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeec
Q 023875 118 IGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFP 197 (276)
Q Consensus 118 V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~ 197 (276)
++++.++.+... .+.++.+. ....|.+|+|+++.+ |++.++|+||++||+|+.+.......+. .|.
T Consensus 3 ~~~i~~~~~~~i-ll~kr~~~--~~~~~~~p~G~~~~~-e~~~~~a~RE~~EE~Gl~~~~~~~~~~~----------~~~ 68 (123)
T cd02883 3 VGAVILDEDGRV-LLVRRADS--PGGLWELPGGGVEPG-ETLEEAAIREVREETGLDVDVLRLLGVY----------EVE 68 (123)
T ss_pred eEEEEECCCCCE-EEEEEcCC--CCCeEeCCcccccCC-CCHHHHHHHHHHHhhCccceeeeEEEEE----------Eee
Confidence 455556664433 35554443 345899999999998 9999999999999999988522222222 122
Q ss_pred CC-CccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhh
Q 023875 198 SA-GGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRT 250 (276)
Q Consensus 198 sp-g~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~ 250 (276)
.+ ......+.+|.+...... .. ..++.|..+.+|++++++.+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~e~~~~~w~~~~~l~~~ 112 (123)
T cd02883 69 SPDEGEHAVVFVFLARLVGGE---------PT-LLPPDEISEVRWVTLDELPAL 112 (123)
T ss_pred ccCCCceEEEEEEEEEeCCCC---------cC-CCCCCccceEEEEcHHHCccc
Confidence 21 345556666766543211 00 135567788999999999874
No 70
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.26 E-value=5.6e-11 Score=99.66 Aligned_cols=110 Identities=22% Similarity=0.262 Sum_probs=69.5
Q ss_pred EEEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeee
Q 023875 117 RIGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFF 196 (276)
Q Consensus 117 ~V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y 196 (276)
.|+++.+..+ .+ .++|.- .+.+..+|.||||++|.| |++++||+||++||||+++. .+..++ +|
T Consensus 12 ~v~~~i~~~~-~i-LLvrR~-~~p~~g~WalPGG~ve~G-Et~eeaa~REl~EETgL~~~--~~~~~~----------v~ 75 (145)
T COG1051 12 AVGALIVRNG-RI-LLVRRA-NEPGAGYWALPGGFVEIG-ETLEEAARRELKEETGLRVR--VLELLA----------VF 75 (145)
T ss_pred eeeEEEEeCC-EE-EEEEec-CCCCCCcEeCCCccCCCC-CCHHHHHHHHHHHHhCCccc--ceeEEE----------Ee
Confidence 4666666655 32 355522 222334799999999998 99999999999999999975 344443 66
Q ss_pred cCCCcc---CeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcC
Q 023875 197 PSAGGC---DEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 252 (276)
Q Consensus 197 ~spg~~---~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~ 252 (276)
.+++.. .....+|++... . +... ..+.++.-.+.|++++++..+..
T Consensus 76 ~~~~rd~r~~~v~~~~~~~~~-~--------g~~~-~~~~~d~~~~~~~~~~~l~~~~~ 124 (145)
T COG1051 76 DDPGRDPRGHHVSFLFFAAEP-E--------GELL-AGDGDDAAEVGWFPLDELPELPL 124 (145)
T ss_pred cCCCCCCceeEEEEEEEEEec-C--------CCcc-cCChhhHhhcceecHhHcccccc
Confidence 666542 122223333321 1 1111 22334677899999999987643
No 71
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.26 E-value=7.7e-11 Score=94.56 Aligned_cols=103 Identities=17% Similarity=-0.008 Sum_probs=62.5
Q ss_pred EecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeecCCCcc
Q 023875 123 FKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGC 202 (276)
Q Consensus 123 ~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~spg~~ 202 (276)
+..++.+ .+.+..+.+.....|+||+|.+|.| |++.+||+||+.||||+.+.... .++. +....+..
T Consensus 12 ~~~~~~v-Ll~~R~~~~~~~g~w~~Pgg~ve~g-e~~~~~~~RE~~EE~g~~~~~~~--~~~~---------~~h~~~~~ 78 (128)
T TIGR00586 12 RNENGEI-IITRRADGHMFAKLLEFPGGKEEGG-ETPEQAVVRELEEEIGIPQHFSE--FEKL---------EYEFYPRH 78 (128)
T ss_pred ECCCCEE-EEEEEeCCCCCCCeEECCCcccCCC-CCHHHHHHHHHHHHHCCcceeee--EEEE---------EEEECCCc
Confidence 4444443 3444333334456999999999998 99999999999999999875322 2321 22212222
Q ss_pred CeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhc
Q 023875 203 DEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT 251 (276)
Q Consensus 203 ~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i 251 (276)
...+++|.+... . + .....+..++.|++++++.+..
T Consensus 79 ~~~~~~~~~~~~--~-------~----~~~~~~~~~~~W~~~~~l~~~~ 114 (128)
T TIGR00586 79 ITLWFWLLERWE--G-------G----PPGKEGQPEEWWVLVGLLADDF 114 (128)
T ss_pred EEEEEEEEEEEc--C-------C----CcCcccccccEEeCHHHCCccC
Confidence 223444444321 1 1 1123345678999999998764
No 72
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.25 E-value=3.5e-11 Score=101.84 Aligned_cols=115 Identities=18% Similarity=0.087 Sum_probs=73.8
Q ss_pred EEEEEEEecceeeeccCeeeeeCC---CCeEEEec-eeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCc
Q 023875 117 RIGFLKFKADIFCKETGQKVRVPT---GRVILELP-AGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTG 192 (276)
Q Consensus 117 ~V~vl~~~~d~~~~~~~rq~R~~~---g~~~wElP-aG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~ 192 (276)
+|+++.++.++.+ .+.+ |... -...|++| ||+++.| | .+||+||++||||+++...++..++.+.
T Consensus 29 ~v~v~v~~~~g~v-Ll~k--R~~~k~~~PG~W~~~~gG~v~~G-E--~eaa~REl~EE~Gl~~~~~~l~~~~~~~----- 97 (158)
T TIGR02150 29 AFSVFLFNEEGQL-LLQR--RALSKITWPGVWTNSCCSHPLPG-E--LEAAIRRLREELGIPADDVPLTVLPRFS----- 97 (158)
T ss_pred EEEEEEEcCCCeE-EEEe--ccCCCcCCCCCccccccCCCCcc-c--HHHHHHHHHHHHCCCccccceEEcceEE-----
Confidence 4667777766554 2433 5442 23589997 7999998 8 4999999999999998744433443210
Q ss_pred eeeecCCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcCChh
Q 023875 193 CKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAK 255 (276)
Q Consensus 193 ~~~y~spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~d~k 255 (276)
..+..+.+..+..++|.++... . ...+.+|..+++|++++++.+++...+
T Consensus 98 -~~~~~~~g~~~~~~~f~~~~~~--~----------~~~~~~Ev~~~~W~~~~el~~~~~~~~ 147 (158)
T TIGR02150 98 -YRARDAWGEHELCPVFFARAPV--P----------LNPNPEEVAEYRWVSLEELKEILKAPW 147 (158)
T ss_pred -EEEecCCCcEEEEEEEEEecCC--c----------ccCChhHeeeEEEeCHHHHHHHHhcCc
Confidence 1111221223455677665421 1 134567999999999999999987443
No 73
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.23 E-value=6.4e-11 Score=97.70 Aligned_cols=118 Identities=21% Similarity=0.125 Sum_probs=68.6
Q ss_pred EEEEEEEecceeeeccCeeeeeCC--CCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcc-cccceeeeccccCCCCce
Q 023875 117 RIGFLKFKADIFCKETGQKVRVPT--GRVILELPAGMLDDDKGDFVGTAVREVEEETGIQL-KLEDMIDLTAFLYPSTGC 193 (276)
Q Consensus 117 ~V~vl~~~~d~~~~~~~rq~R~~~--g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~-~~~~l~~L~~l~~~~~~~ 193 (276)
++.++.++.++.+ .+.+. +.+. ....|++|+|+++.| |++.+||.||++||||+.+ ....+.....
T Consensus 2 ~~~~~i~~~~g~v-Ll~r~-~~~~~~~~~~w~~PgG~ve~g-E~~~~a~~Re~~EE~G~~~~~~~~~~~~~~-------- 70 (133)
T cd04685 2 AARVVLLDPDDRV-LLLRG-DDPDSPGPDWWFTPGGGVEPG-ESPEQAARRELREETGITVADLGPPVWRRD-------- 70 (133)
T ss_pred eEEEEEEcCCCeE-EEEEE-eCCCCCCCCEEECCcCCCCCC-CCHHHHHHHHHHHHHCCccccccceEEEEE--------
Confidence 3566777666655 35552 2222 445899999999998 9999999999999999998 3222221111
Q ss_pred eeecCCC-ccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhh
Q 023875 194 KFFPSAG-GCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRT 250 (276)
Q Consensus 194 ~~y~spg-~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~ 250 (276)
..|...+ ...+..++|+++... .+ + ........+.++..+++|++++++.+.
T Consensus 71 ~~f~~~~~~~~~~~~~f~~~~~~-~~-~---~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 71 AAFTFLGVDGRQEERFFLARTPR-TE-P---SPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred EEEEecCccceeeEEEEEEEcCC-cc-c---cCCCCChhhhhhcccccCCCHHHHhhC
Confidence 1122222 122345567765431 11 0 000000112234558999999999764
No 74
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.20 E-value=2.3e-10 Score=91.46 Aligned_cols=84 Identities=18% Similarity=0.133 Sum_probs=54.1
Q ss_pred CeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeecCCCccCeEEEEEEEEEeehhhHHH
Q 023875 142 RVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIM 221 (276)
Q Consensus 142 ~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~spg~~~e~i~lfla~~~~~~~~i~ 221 (276)
...|+||+|.+|+| |++.+||.||++||||+++.. ...++. ..+..+.. .-.+++|.+... .
T Consensus 30 ~g~w~~PgG~~~~g-E~~~~a~~Re~~EE~gl~~~~--~~~~~~--------~~~~~~~~-~~~~~~~~~~~~-~----- 91 (129)
T PRK10776 30 AGKWEFPGGKIEAG-ETPEQALIRELQEEVGITVQH--ATLFEK--------LEYEFPDR-HITLWFWLVESW-E----- 91 (129)
T ss_pred CCeEECCceecCCC-CCHHHHHHHHHHHHHCCceec--ceEEEE--------EEeeCCCc-EEEEEEEEEEEE-C-----
Confidence 45899999999998 999999999999999998752 333332 11212211 122344444321 1
Q ss_pred HhcCCCCCCCCCCceEEEEEEchhhHhhh
Q 023875 222 QLQGKETGLRDHGELIKVRVVPYRELWRT 250 (276)
Q Consensus 222 ~~~g~~~g~~d~~E~i~v~wv~leel~~~ 250 (276)
+ .....|..+++|++++++...
T Consensus 92 ---~----~~~~~e~~~~~W~~~~~l~~~ 113 (129)
T PRK10776 92 ---G----EPWGKEGQPGRWVSQVALNAD 113 (129)
T ss_pred ---C----ccCCccCCccEEecHHHCccC
Confidence 1 112345667899999999875
No 75
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.15 E-value=4.2e-10 Score=106.61 Aligned_cols=102 Identities=24% Similarity=0.349 Sum_probs=64.5
Q ss_pred cCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeecCCCcc---CeEEEE
Q 023875 132 TGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGC---DEEISL 208 (276)
Q Consensus 132 ~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~spg~~---~e~i~l 208 (276)
+++... ..++..|.+|||++|+| |++.+||+||++||||+++....+..... ...+|..|+.. ....++
T Consensus 218 LvrR~~-~p~~g~W~lPGG~ve~g-Et~~~Aa~REl~EETGl~v~~~~l~~~~~------~~~~f~~p~r~~~~~~i~~~ 289 (340)
T PRK05379 218 LVRRRA-EPGKGLWALPGGFLEQD-ETLLDACLRELREETGLKLPEPVLRGSIR------DQQVFDHPGRSLRGRTITHA 289 (340)
T ss_pred EEEecC-CCCCCeEECCcccCCCC-CCHHHHHHHHHHHHHCCcccccccceeee------eeEEEcCCCCCCCCcEEEEE
Confidence 555222 23467899999999998 99999999999999999986433322110 01244445432 234456
Q ss_pred EEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhh
Q 023875 209 FLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRT 250 (276)
Q Consensus 209 fla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~ 250 (276)
|++... ... .......+|..++.|++++++.++
T Consensus 290 f~~~~~-~~~--------~~~~~~~de~~~~~W~~~~el~~~ 322 (340)
T PRK05379 290 FLFEFP-AGE--------LPRVKGGDDADKARWVPLAELLAM 322 (340)
T ss_pred EEEEec-CCc--------cCccCCCCceeeEEEEEHHHhhhh
Confidence 665432 111 011234567889999999999864
No 76
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.13 E-value=6.6e-10 Score=90.23 Aligned_cols=62 Identities=26% Similarity=0.378 Sum_probs=44.6
Q ss_pred EEEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeee
Q 023875 117 RIGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDL 183 (276)
Q Consensus 117 ~V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L 183 (276)
.|++++.. ++. .++++.+.+ +...|+||+|++|+| |++.+||+||+.||||+++....+..+
T Consensus 7 av~vl~~~-~~~--lL~~r~~~~-~~~~w~lPgG~ve~~-E~~~~aa~REl~EE~g~~~~~~~l~~~ 68 (118)
T cd04674 7 VVALLPVD-DGL--LVIRRGIEP-GRGKLALPGGFIELG-ETWQDAVARELLEETGVAVDPADIRLF 68 (118)
T ss_pred EEEEEEEC-CCE--EEEEeecCC-CCCeEECCceecCCC-CCHHHHHHHHHHHHHCCcccccEEEEE
Confidence 34555554 333 245544333 456899999999998 999999999999999999864344444
No 77
>PLN02709 nudix hydrolase
Probab=98.99 E-value=2.4e-09 Score=95.70 Aligned_cols=90 Identities=20% Similarity=0.221 Sum_probs=62.0
Q ss_pred CeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeecCCCccCeEEEEEEEEEeehhhHHH
Q 023875 142 RVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIM 221 (276)
Q Consensus 142 ~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~spg~~~e~i~lfla~~~~~~~~i~ 221 (276)
...|.||||++|++|+++.+||+||++||+|+... ....++.+. .++. + +...|+-|++.......
T Consensus 66 ~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~--~v~vlg~L~------~~~t-~--sg~~V~P~V~~~~~~~~--- 131 (222)
T PLN02709 66 PGEVALPGGKRDEEDKDDIATALREAREEIGLDPS--LVTIISVLE------PFVN-K--KGMSVAPVIGFLHDKKA--- 131 (222)
T ss_pred CCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCch--heEEeeecC------CeEC-C--CCCEEEEEEEEecCCCC---
Confidence 45799999999998678999999999999999886 455555431 1332 2 23356666654321100
Q ss_pred HhcCCCCCCCCCCceEEEEEEchhhHhhh
Q 023875 222 QLQGKETGLRDHGELIKVRVVPYRELWRT 250 (276)
Q Consensus 222 ~~~g~~~g~~d~~E~i~v~wv~leel~~~ 250 (276)
..-..+.+|.-++.|+|++++.+.
T Consensus 132 -----~~~~~np~EV~~vf~vPL~~ll~~ 155 (222)
T PLN02709 132 -----FKPLPNPAEVEEIFDVPLEMFLKD 155 (222)
T ss_pred -----ccccCChhhhheeEEecHHHHhCC
Confidence 011247789999999999998654
No 78
>PRK08999 hypothetical protein; Provisional
Probab=98.98 E-value=3.3e-09 Score=98.60 Aligned_cols=102 Identities=17% Similarity=0.060 Sum_probs=64.1
Q ss_pred EecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeecCCCcc
Q 023875 123 FKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGC 202 (276)
Q Consensus 123 ~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~spg~~ 202 (276)
.+.++.+ .+.+..+.......|+||+|.+|.| |++.+||.||++||||+.+.. ...+.. ..+..+. .
T Consensus 13 ~~~~~~v-LL~kR~~~~~~~g~w~~PgG~ve~g-E~~~~aa~RE~~EE~Gl~~~~--~~~l~~--------~~h~~~~-~ 79 (312)
T PRK08999 13 RDADGRI-LLARRPEGKHQGGLWEFPGGKVEPG-ETVEQALARELQEELGIEVTA--ARPLIT--------VRHDYPD-K 79 (312)
T ss_pred ECCCCeE-EEEEecCCCCCCCeEECCccCCCCC-CCHHHHHHHHHHHHhCCceec--ceeEEE--------EEEEcCC-C
Confidence 3443443 3554333333456899999999998 999999999999999999763 333332 1222222 2
Q ss_pred CeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhh
Q 023875 203 DEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRT 250 (276)
Q Consensus 203 ~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~ 250 (276)
...+++|.+.... + .....|..+++|++++++.++
T Consensus 80 ~~~i~~y~~~~~~---------~----~~~~~e~~~~~Wv~~~el~~~ 114 (312)
T PRK08999 80 RVRLDVRRVTAWQ---------G----EPHGREGQPLAWVAPDELAVY 114 (312)
T ss_pred eEEEEEEEEEEec---------C----cccCccCCccEEecHHHcccC
Confidence 3456666554321 1 123345667899999999875
No 79
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=98.93 E-value=1.3e-09 Score=99.87 Aligned_cols=107 Identities=22% Similarity=0.252 Sum_probs=76.0
Q ss_pred EEEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeee
Q 023875 117 RIGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFF 196 (276)
Q Consensus 117 ~V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y 196 (276)
.|-|+....+. . .+.++.|+..| .+.+-||.||+| ||+++|.+||+.||+|+.++ ++.++++ .-+
T Consensus 146 ~vIv~v~~~~~-i-lLa~~~~h~~g--~yS~LAGFVE~G-ETlE~AV~REv~EE~Gi~V~--~vrY~~S--------QPW 210 (279)
T COG2816 146 CVIVAVIRGDE-I-LLARHPRHFPG--MYSLLAGFVEPG-ETLEQAVAREVFEEVGIKVK--NVRYVGS--------QPW 210 (279)
T ss_pred eEEEEEecCCc-e-eecCCCCCCCc--ceeeeeecccCC-ccHHHHHHHHHHHhhCeEEe--eeeEEec--------cCC
Confidence 44444444444 3 46777777743 577899999999 99999999999999999997 7888875 344
Q ss_pred cCCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcC
Q 023875 197 PSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 252 (276)
Q Consensus 197 ~spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~ 252 (276)
|.|. ..+--|+++.... +| ..|+.|..+..|++.+|+..++.
T Consensus 211 PfP~---SLMigf~aey~sg--eI---------~~d~~Eleda~WFs~~evl~~L~ 252 (279)
T COG2816 211 PFPH---SLMLGFMAEYDSG--EI---------TPDEGELEDARWFSRDEVLPALP 252 (279)
T ss_pred CCch---hhhhhheeeeccc--cc---------cCCcchhhhccccCHhHHhhhcC
Confidence 4443 2334466665421 12 35778999999999999666654
No 80
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=98.91 E-value=1.5e-08 Score=80.26 Aligned_cols=41 Identities=37% Similarity=0.534 Sum_probs=33.3
Q ss_pred eEEEeceeecCCCCCCHHH-HHHHHHHHHhCCcccccceeeec
Q 023875 143 VILELPAGMLDDDKGDFVG-TAVREVEEETGIQLKLEDMIDLT 184 (276)
Q Consensus 143 ~~wElPaG~vD~G~Es~~e-AA~REL~EETGl~~~~~~l~~L~ 184 (276)
..|++|||++|.| |++.+ ||+||++||||+.+....+..++
T Consensus 36 ~~~~~PgG~ve~~-e~~~~~aa~RE~~EEtGl~~~~~~~~~~~ 77 (161)
T COG0494 36 GLWELPGGKVEPG-EELPEEAAARELEEETGLRVKDERLELLG 77 (161)
T ss_pred CceecCCcccCCC-CchHHHHHHHHHHHHhCCeeeeecceeee
Confidence 5799999999998 77788 99999999999998632344443
No 81
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=98.90 E-value=2.2e-10 Score=105.74 Aligned_cols=112 Identities=21% Similarity=0.196 Sum_probs=75.3
Q ss_pred CEEEEEEEecceeeeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceee
Q 023875 116 KRIGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKF 195 (276)
Q Consensus 116 ~~V~vl~~~~d~~~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~ 195 (276)
+.|.++.++.|+....++||-|++.| .|..+||.+|+| |+.++||+||+.||||++++ .+.....
T Consensus 188 PvVIm~li~~d~~~~LL~R~~r~~~g--l~t~lAGFlEpG-ES~eeav~REtwEEtGi~V~--~I~~~as---------- 252 (345)
T KOG3084|consen 188 PVVIMLLIDHDGKHALLGRQKRYPPG--LWTCLAGFLEPG-ESIEEAVRRETWEETGIEVE--VISYVAS---------- 252 (345)
T ss_pred CeEEEEEEcCCCCEeeeecccCCCCc--hhhhhhccCCcc-ccHHHHHHHHHHHHhCceee--eEeeeec----------
Confidence 34555556777777679999999988 788999999999 99999999999999999996 4554432
Q ss_pred ecCCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCC-ceEEEEEEchhhHhhhcC
Q 023875 196 FPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHG-ELIKVRVVPYRELWRTTP 252 (276)
Q Consensus 196 y~spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~-E~i~v~wv~leel~~~i~ 252 (276)
.|-|-+....+ ++ +.. +..+.++. ..+.+ |..+.+|++-+++.+.+.
T Consensus 253 QPWP~~p~SLM-Ig----c~a---la~~~~~I--~vd~dlEleDaqwF~r~ev~~aL~ 300 (345)
T KOG3084|consen 253 QPWPLMPQSLM-IG----CLA---LAKLNGKI--SVDKDLELEDAQWFDREEVKSALT 300 (345)
T ss_pred CCCCCCchHHH-HH----HHH---HHhhCCcc--ccCcchhhhhcccccHHHHHHHHH
Confidence 22231111111 11 101 11111222 34555 888999999999877653
No 82
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=98.89 E-value=6.1e-09 Score=95.61 Aligned_cols=124 Identities=20% Similarity=0.168 Sum_probs=98.3
Q ss_pred CCEEEEEEEecceeeeccCeeeeeCC---------------------------CCeEEEeceeecCCCCCCHHHHHHHHH
Q 023875 115 GKRIGFLKFKADIFCKETGQKVRVPT---------------------------GRVILELPAGMLDDDKGDFVGTAVREV 167 (276)
Q Consensus 115 g~~V~vl~~~~d~~~~~~~rq~R~~~---------------------------g~~~wElPaG~vD~G~Es~~eAA~REL 167 (276)
.+.|.+|.++......++++|+|+|+ -..++||.||.||.. -+..+.|+||.
T Consensus 229 hdSvt~iL~n~srk~LVlvqqfRpaVy~G~~~~~~~g~~~~vDe~~~~e~~PaigvTlELcag~Vd~p-~s~~e~a~~e~ 307 (405)
T KOG4432|consen 229 HDSVTCILVNMSRKELVLVQQFRPAVYVGKNRFLKEGIGKPVDEIDFSESDPAIGVTLELCAGRVDDP-FSDPEKAARES 307 (405)
T ss_pred CCceEEEEEeccchheehhhhcCcceeecceeecccCCCCcccccccccCCccceeeeeeecccCCCC-cccHHHHHHHH
Confidence 57898888876665556889988765 135899999999987 78999999999
Q ss_pred HHHhCCcccccceeeeccccCCCCceeeecCCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhH
Q 023875 168 EEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYREL 247 (276)
Q Consensus 168 ~EETGl~~~~~~l~~L~~l~~~~~~~~~y~spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel 247 (276)
.||+||++.+++++... .+.+-.|.+.....+|+++..... -.|+..|..+++|.|++.-++++++
T Consensus 308 veecGYdlp~~~~k~va---------~y~sGVG~SG~~QTmfy~eVTdA~-----rsgpGgg~~ee~E~IEvv~lsle~a 373 (405)
T KOG4432|consen 308 VEECGYDLPEDSFKLVA---------KYISGVGQSGDTQTMFYVEVTDAR-----RSGPGGGEKEEDEDIEVVRLSLEDA 373 (405)
T ss_pred HHHhCCCCCHHHHhhhh---------eeecccCCcCCeeEEEEEEeehhh-----ccCCCCCcccccceeeEEEechhhh
Confidence 99999999888888776 355556777778888888754221 1255566788999999999999999
Q ss_pred hhhcCC
Q 023875 248 WRTTPD 253 (276)
Q Consensus 248 ~~~i~d 253 (276)
..+..+
T Consensus 374 ~~~~~q 379 (405)
T KOG4432|consen 374 PSLYRQ 379 (405)
T ss_pred hHHHhc
Confidence 999874
No 83
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=98.85 E-value=4.2e-08 Score=85.70 Aligned_cols=32 Identities=31% Similarity=0.347 Sum_probs=29.4
Q ss_pred eEEEeceeecCCCCCCHHHHHHHHHHHHhCCcc
Q 023875 143 VILELPAGMLDDDKGDFVGTAVREVEEETGIQL 175 (276)
Q Consensus 143 ~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~ 175 (276)
..|.||||++|++ |++.+||+|||+||||+.+
T Consensus 60 g~walPGG~v~~~-E~~~~aa~Rel~EEt~l~l 91 (186)
T cd03670 60 GEWAIPGGMVDPG-EKISATLKREFGEEALNSL 91 (186)
T ss_pred CcCcCCeeeccCC-CCHHHHHHHHHHHHHcccc
Confidence 4699999999998 9999999999999997754
No 84
>PLN02791 Nudix hydrolase homolog
Probab=98.70 E-value=4.6e-08 Score=101.00 Aligned_cols=120 Identities=18% Similarity=0.120 Sum_probs=77.0
Q ss_pred EEEEEEEec-ceeeeccCeeeeeCCC---CeEEEe-ceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCC
Q 023875 117 RIGFLKFKA-DIFCKETGQKVRVPTG---RVILEL-PAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPST 191 (276)
Q Consensus 117 ~V~vl~~~~-d~~~~~~~rq~R~~~g---~~~wEl-PaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~ 191 (276)
+|.|..++. ++.+ .=|.|.... ...|.+ |||+++.| |+..+||+||++||+|+.+..+.+..++.+..
T Consensus 34 AvhVwIfn~~~gel---LLQkRS~~K~~~PG~WDiS~gGHv~aG-Es~~eAA~REL~EELGI~l~~~~l~~l~~~~~--- 106 (770)
T PLN02791 34 AVHVWIYSESTQEL---LLQRRADCKDSWPGQWDISSAGHISAG-DTSLLSAQRELEEELGIILPKDAFELLFVFLQ--- 106 (770)
T ss_pred EEEEEEEECCCCeE---EEEEecCCCCCCCCcccCcCCCCCCCC-CCHHHHHHHHHHHHhCCCCChhheeeeeeEEE---
Confidence 455555664 2333 223355433 347888 79999998 99999999999999999976556666653100
Q ss_pred ceeeecCCC--ccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcC
Q 023875 192 GCKFFPSAG--GCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 252 (276)
Q Consensus 192 ~~~~y~spg--~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~ 252 (276)
......+ ...+..++|++....+.+ + ... ..+++|..+++|++++|+.+++.
T Consensus 107 --~~~~~~g~~~e~E~~~VYlv~~~~~~p-~----~~~--~lq~eEV~~v~wvsl~El~~~l~ 160 (770)
T PLN02791 107 --ECVINDGKFINNEYNDVYLVTTLDPIP-L----EAF--TLQESEVSAVKYMSIEEYKSALA 160 (770)
T ss_pred --EeeccCCCcceeeEEEEEEEEECCCCC-c----ccC--CCChhhhheeEEEcHHHHHHHHh
Confidence 0111112 244778888875321110 0 011 34788999999999999998875
No 85
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=98.68 E-value=8.1e-08 Score=87.36 Aligned_cols=123 Identities=19% Similarity=0.144 Sum_probs=69.2
Q ss_pred EEEEEEEecceeeeccCeeeeeCCCC---eEEEec-----eeecCCCC---------CC---HHHHHHHHHHHHhCCccc
Q 023875 117 RIGFLKFKADIFCKETGQKVRVPTGR---VILELP-----AGMLDDDK---------GD---FVGTAVREVEEETGIQLK 176 (276)
Q Consensus 117 ~V~vl~~~~d~~~~~~~rq~R~~~g~---~~wElP-----aG~vD~G~---------Es---~~eAA~REL~EETGl~~~ 176 (276)
++.|+.++.++.+. + |.|.+... ..|+.. .+..|.++ |+ ..+||+|||+|||||.+.
T Consensus 58 a~~v~i~n~~g~lL-L--QkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~~ 134 (247)
T PLN02552 58 AFSVFLFNSKYELL-L--QQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPAE 134 (247)
T ss_pred EEEEEEEcCCCeEE-E--EEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCCcc
Confidence 46677777766542 2 34665542 478554 33333320 11 678999999999999964
Q ss_pred c---cceeeeccccCCC-CceeeecCCCcc-CeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhc
Q 023875 177 L---EDMIDLTAFLYPS-TGCKFFPSAGGC-DEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT 251 (276)
Q Consensus 177 ~---~~l~~L~~l~~~~-~~~~~y~spg~~-~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i 251 (276)
. +++..++.+.+.. .....||+.+.. ++..++|+. ...... .. .++.+|..+++|++++++.+++
T Consensus 135 ~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~-~~~~~~-------~l--~lq~eEV~~~~wvs~~el~~~~ 204 (247)
T PLN02552 135 DVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFI-RPVRDV-------KV--NPNPDEVADVKYVNREELKEMM 204 (247)
T ss_pred ccccccceeeeEEEEecccccccccCCCccceEEEEEEEE-EecCCC-------cc--cCCHHHhheEEEEeHHHHHHHH
Confidence 2 2355555321100 001122223332 355555543 222211 11 4578899999999999999986
Q ss_pred C
Q 023875 252 P 252 (276)
Q Consensus 252 ~ 252 (276)
.
T Consensus 205 ~ 205 (247)
T PLN02552 205 R 205 (247)
T ss_pred h
Confidence 4
No 86
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=98.65 E-value=7.5e-08 Score=80.14 Aligned_cols=122 Identities=16% Similarity=0.091 Sum_probs=69.1
Q ss_pred EEEEEEeccee--eeccCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceee
Q 023875 118 IGFLKFKADIF--CKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKF 195 (276)
Q Consensus 118 V~vl~~~~d~~--~~~~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~ 195 (276)
+|.|++..+.. .+.++...+++. .|-+|+|++|++ |+..+||.||..||.|+.... ...++.+.+ ...
T Consensus 12 agCi~~r~~~~~ieVLlvsSs~~~~---~wi~PKGGwE~d-E~~~eAA~REt~EEAGv~G~l--~~~~~g~~~----~~~ 81 (145)
T KOG2839|consen 12 AGCICYRSDKEKIEVLLVSSSKKPH---RWIVPKGGWEPD-ESVEEAALRETWEEAGVKGKL--GRLLGGFED----FLS 81 (145)
T ss_pred EEeeeeeecCcceEEEEEecCCCCC---CccCCCCCCCCC-CCHHHHHHHHHHHHhCceeee--eccccchhh----ccC
Confidence 34455544432 223444334333 488999999997 999999999999999999862 222332110 011
Q ss_pred ecCCCccCeEEEEEEEEEeehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcCChhHHHHH
Q 023875 196 FPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAI 260 (276)
Q Consensus 196 y~spg~~~e~i~lfla~~~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~d~ktl~al 260 (276)
+..-..+... .|... ..++++.| ...+.|.-+.+|+.++|+.+.+.......|+
T Consensus 82 ~~~~~~~k~~--~~~l~---v~e~le~w------p~~~~~~r~r~W~~ledA~~~~~~~~m~~al 135 (145)
T KOG2839|consen 82 KKHRTKPKGV--MYVLA---VTEELEDW------PESEHEFREREWLKLEDAIELCQHKWMKAAL 135 (145)
T ss_pred hhhcccccce--eehhh---hhhhcccC------hhhhcccceeEEeeHHHHHHHHhhHHHHHHH
Confidence 1111122222 22221 12222111 2345568899999999999988754444444
No 87
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=98.56 E-value=2.1e-07 Score=85.66 Aligned_cols=89 Identities=22% Similarity=0.265 Sum_probs=74.1
Q ss_pred CEEEEEEEecceeeeccCeeeeeCC-------------------------CCeEEEeceeecCCCCCCHHHHHHHHHHHH
Q 023875 116 KRIGFLKFKADIFCKETGQKVRVPT-------------------------GRVILELPAGMLDDDKGDFVGTAVREVEEE 170 (276)
Q Consensus 116 ~~V~vl~~~~d~~~~~~~rq~R~~~-------------------------g~~~wElPaG~vD~G~Es~~eAA~REL~EE 170 (276)
++|.||.++.|...+.++||||.++ -++++|+.||.||.+ -++.+.|..|+.||
T Consensus 27 ~~v~ill~~r~~eq~l~vrqfr~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke-~s~~eia~eev~ee 105 (405)
T KOG4432|consen 27 SSVSILLFHRDLEQFLLVRQFRPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKE-LSPREIASEEVAEE 105 (405)
T ss_pred cceEEEEEccchhhhehhhhhchhheecccCCCCCCcccccccHhhCCCccceeeeeeccccccc-cCHHHHhHHHHHHH
Confidence 4688999988877767899999765 136899999999996 99999999999999
Q ss_pred hCCcccccceeeeccccCCCCceeeecCCCccCeEEEEEEEEEe
Q 023875 171 TGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGR 214 (276)
Q Consensus 171 TGl~~~~~~l~~L~~l~~~~~~~~~y~spg~~~e~i~lfla~~~ 214 (276)
+||++..++|+++.. +..-.+.+....|+|+|+.+
T Consensus 106 cgy~v~~d~l~hv~~---------~~~g~~~s~sa~~l~y~ei~ 140 (405)
T KOG4432|consen 106 CGYRVDPDDLIHVIT---------FVVGAHQSGSAQHLYYAEID 140 (405)
T ss_pred hCCcCChhHceEEEE---------EEeccccCccchheeeeecc
Confidence 999999999999863 33344556678899999865
No 88
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=98.40 E-value=9.8e-07 Score=78.91 Aligned_cols=95 Identities=25% Similarity=0.272 Sum_probs=61.6
Q ss_pred eeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeecCCCccCeEEEEEEEEEee
Q 023875 136 VRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRV 215 (276)
Q Consensus 136 ~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~spg~~~e~i~lfla~~~~ 215 (276)
-|.-.|. ..||||+.|+.|++.+.+|.||.+||.|+... .+..++.+. .++...+..-.-+-.|+....+
T Consensus 69 LrshsGe--v~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~--~~~~~g~l~------~~~~r~~~~v~p~v~~l~~~~~ 138 (246)
T KOG3069|consen 69 LRSHSGE--VCFPGGRRDPHDKSDIQTALRETEEEIGLDPE--LVDVLGALP------PFVLRSGWSVFPVVGFLSDKKI 138 (246)
T ss_pred ccccCCc--eeCCCCcCCccccchHHHHHHHHHHHhCCCHH--Hhhhhhhcc------ceeeccCcccceeEEEEecccc
Confidence 3444444 56999999998899999999999999999985 455555431 2333333322222233332211
Q ss_pred hhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhh
Q 023875 216 DKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRT 250 (276)
Q Consensus 216 ~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~ 250 (276)
- . ....+.+|...+.|||++++..-
T Consensus 139 l-~---------~~~ln~gEv~~~F~VPL~~ll~~ 163 (246)
T KOG3069|consen 139 L-P---------SLRLNSGEVESAFWVPLTDLLLP 163 (246)
T ss_pred c-c---------cccCCchheeeeeeeeHHHHhhh
Confidence 0 0 12468899999999999998654
No 89
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=98.25 E-value=3e-06 Score=69.33 Aligned_cols=97 Identities=22% Similarity=0.241 Sum_probs=68.4
Q ss_pred CeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeecCCCccCeEEEEEEEEEeehhhHHH
Q 023875 142 RVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIM 221 (276)
Q Consensus 142 ~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~spg~~~e~i~lfla~~~~~~~~i~ 221 (276)
...|.+|.|..+.| |++..||+||..||+||.++ ..+..+++ +-.+|+ ..+..|-.+...+...++
T Consensus 35 ~GAWSIPKGey~~g-Edp~~AArREf~EE~Gi~vd-GP~~~lG~----------~kQ~GG--KvVta~~veae~Dva~~r 100 (161)
T COG4119 35 DGAWSIPKGEYTGG-EDPWLAARREFSEEIGICVD-GPRIDLGS----------LKQSGG--KVVTAFGVEAELDVADAR 100 (161)
T ss_pred CCcccccccccCCC-cCHHHHHHHHhhhhhceeec-Cchhhhhh----------hccCCC--cEEEEEeeeeeeehhhhh
Confidence 34799999999998 99999999999999999996 46777774 333443 355556655544444333
Q ss_pred H------hcCCCCCCCCCCceEEEEEEchhhHhhhcC
Q 023875 222 Q------LQGKETGLRDHGELIKVRVVPYRELWRTTP 252 (276)
Q Consensus 222 ~------~~g~~~g~~d~~E~i~v~wv~leel~~~i~ 252 (276)
+ |.......+.-.|....-|+++.++...+.
T Consensus 101 SntFe~eWPprSG~M~~FPEVDRagWF~l~eAr~Kil 137 (161)
T COG4119 101 SNTFELEWPPRSGKMRKFPEVDRAGWFPLAEARTKIL 137 (161)
T ss_pred cceeeeecCCCCCccccCcccccccceecHHHHhHHh
Confidence 2 222222244566888999999999987775
No 90
>PLN02839 nudix hydrolase
Probab=98.17 E-value=2.4e-05 Score=74.65 Aligned_cols=177 Identities=15% Similarity=0.156 Sum_probs=101.8
Q ss_pred cceeeeeceEEEEEEEEEeCCCcEEEEEEEEeeeeecCC---EEEEEEEe-cc--eeeeccCeeeeeCCCCeEE-Eecee
Q 023875 78 ESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGK---RIGFLKFK-AD--IFCKETGQKVRVPTGRVIL-ELPAG 150 (276)
Q Consensus 78 ~~~~f~~~~~~l~~~~~~~~~G~~~~~~v~~~~v~~~g~---~V~vl~~~-~d--~~~~~~~rq~R~~~g~~~w-ElPaG 150 (276)
+.-.+++|..-+..- .-..|...+..+...++-+||- +|-+-.+. .+ ...++-.|....+.....| .+.||
T Consensus 165 ~~g~~~gWRnE~y~V--~~~~~~~~l~~iERaA~~lfGi~tyGVHlNGyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAG 242 (372)
T PLN02839 165 DKGIIPGIRNELYPV--KPSFNAPVFFSLERAAAPYFGIKGYGVHMNGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAG 242 (372)
T ss_pred HcCCCCCcccCcccc--ccCCCCcceEEEeeccccccCceeEEEEEEEEEecCCCeEEEeeccCCCCCCCCChhhhcccc
Confidence 455678886544332 1111223344444445666662 24333332 11 2222111222233333455 67899
Q ss_pred ecCCCCCCHHHHHHHHHHHHhCCcccc-cceeeeccccCCCCceeeecCC-CccCeEEEEEEEEEeehhhHHHHhcCCCC
Q 023875 151 MLDDDKGDFVGTAVREVEEETGIQLKL-EDMIDLTAFLYPSTGCKFFPSA-GGCDEEISLFLYRGRVDKEIIMQLQGKET 228 (276)
Q Consensus 151 ~vD~G~Es~~eAA~REL~EETGl~~~~-~~l~~L~~l~~~~~~~~~y~sp-g~~~e~i~lfla~~~~~~~~i~~~~g~~~ 228 (276)
++..| |++.++++||+.||.|+.... ..++..+.+. .++..+ +...+.+ |++....+.+ + .
T Consensus 243 Gi~aG-esp~etliREa~EEAgLp~~l~~~~~~~G~Vs------Y~~~~~~g~~~evl--y~YDLeLP~d----f----~ 305 (372)
T PLN02839 243 GLPHG-ISCGENLVKECEEEAGISKAIADRAIAVGAVS------YMDIDQYCFKRDVL--FCYDLELPQD----F----V 305 (372)
T ss_pred CccCC-CCHHHHHHHHHHHHcCCCHHHHhcceEeEEEE------EEEEcCCccccCEE--EEeeeecCCc----c----c
Confidence 99998 999999999999999997531 2455555421 122222 2233333 3333222221 1 1
Q ss_pred CCCCCCceEEEEEEchhhHhhhcCCh---hHHHHHHHHHHHHhCCCCC
Q 023875 229 GLRDHGELIKVRVVPYRELWRTTPDA---KVLTAIALYEMASKEELLP 273 (276)
Q Consensus 229 g~~d~~E~i~v~wv~leel~~~i~d~---ktl~al~l~~~l~~~g~l~ 273 (276)
...+++|.-+..+++++|+.+.+.++ |.-+|+.+...|.|.|.|-
T Consensus 306 P~~qDGEVe~F~Lm~v~EV~~~l~~~~~fKpn~aLViiDFLiRhG~It 353 (372)
T PLN02839 306 PKNQDGEVESFKLIPVAQVANVIRKTSFFKANCSLVIIDFLFRHGFIR 353 (372)
T ss_pred cCCCccceeEEEEecHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCC
Confidence 13478999999999999999888643 4568888889999999874
No 91
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=97.75 E-value=1.5e-05 Score=73.87 Aligned_cols=98 Identities=21% Similarity=0.220 Sum_probs=60.4
Q ss_pred eeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeecCCCccCeEEEEEEEEEee
Q 023875 136 VRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRV 215 (276)
Q Consensus 136 ~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~spg~~~e~i~lfla~~~~ 215 (276)
......+..|-+|.|.|+++ |++.++|+||++||||++..-..+..+. ..+.+...-...-.+|.|+ ..
T Consensus 136 d~~~~~~~~wK~ptG~v~~~-e~i~~gavrEvkeetgid~ef~eVla~r---------~~H~~~~~~~ksd~f~~c~-L~ 204 (295)
T KOG0648|consen 136 DGAVKIRGGWKLPTGRVEEG-EDIWHGAVREVKEETGIDTEFVEVLAFR---------RAHNATFGLIKSDMFFTCE-LR 204 (295)
T ss_pred ccceeecccccccceEeccc-ccchhhhhhhhHHHhCcchhhhhHHHHH---------hhhcchhhcccccceeEEE-ee
Confidence 45555667899999999998 9999999999999999976533333332 1333222111122233343 32
Q ss_pred hhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcC
Q 023875 216 DKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP 252 (276)
Q Consensus 216 ~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~ 252 (276)
+.. + .-.....|+....|+|+++......
T Consensus 205 p~s----~----~i~~~~~ei~~~~Wmp~~e~v~qp~ 233 (295)
T KOG0648|consen 205 PRS----L----DITKCKREIEAAAWMPIEEYVSQPL 233 (295)
T ss_pred ccc----c----ccchhHHHHHHHhcccHHHhhcccc
Confidence 321 0 0123455666669999998866654
No 92
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=97.23 E-value=0.0007 Score=58.35 Aligned_cols=89 Identities=15% Similarity=-0.020 Sum_probs=61.9
Q ss_pred ceeecCCCCCCHHHHHHHHHHHHhCCcccc-cceeeeccccCCCCceeeecCCCccCeEEEEEEEEEeehhhHHHHhcCC
Q 023875 148 PAGMLDDDKGDFVGTAVREVEEETGIQLKL-EDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGK 226 (276)
Q Consensus 148 PaG~vD~G~Es~~eAA~REL~EETGl~~~~-~~l~~L~~l~~~~~~~~~y~spg~~~e~i~lfla~~~~~~~~i~~~~g~ 226 (276)
..|+=-+| |+.++||+|-+.+|+||++.. +.+..+.. -.+...+++...-.|...+++++....
T Consensus 67 vCsHP~~~-es~~~A~~rRl~~ELGie~~~~d~~~il~r----f~YrA~~~~~~~E~Eic~V~~~~~~~~---------- 131 (185)
T COG1443 67 VCSHPLPG-ESNEDAARRRLAYELGIEPDQYDKLEILPR----FRYRAADPDGIVENEICPVLAARLDSA---------- 131 (185)
T ss_pred ccCCCcCC-CchHHHHHHHHHHHhCCCCcccCccccccc----eEEeccCCCCcceeeeeeEEEEeecCC----------
Confidence 45666688 999999999999999999863 12222221 122334444455567777777765321
Q ss_pred CCCCCCCCceEEEEEEchhhHhhhcCC
Q 023875 227 ETGLRDHGELIKVRVVPYRELWRTTPD 253 (276)
Q Consensus 227 ~~g~~d~~E~i~v~wv~leel~~~i~d 253 (276)
. ..+++|..+.+|++++++++++.+
T Consensus 132 ~--~~npdEV~~~~wv~~e~l~~~~~~ 156 (185)
T COG1443 132 L--DPNPDEVMDYRWVSPEDLKEMVDA 156 (185)
T ss_pred C--CCChHHhhheeccCHHHHHHhhcC
Confidence 1 357899999999999999999874
No 93
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=97.07 E-value=0.0061 Score=47.45 Aligned_cols=36 Identities=14% Similarity=0.249 Sum_probs=29.4
Q ss_pred eeCCC--CeEEEeceeecCCCCCCHHHHHHHHHHHHhCC
Q 023875 137 RVPTG--RVILELPAGMLDDDKGDFVGTAVREVEEETGI 173 (276)
Q Consensus 137 R~~~g--~~~wElPaG~vD~G~Es~~eAA~REL~EETGl 173 (276)
|...| +.+||||+|.++.+ ++.+++..||+.||.++
T Consensus 21 R~~~gl~~glwefP~~~~~~~-~~~~~~~~~~~~~~~~~ 58 (118)
T cd03431 21 RPEKGLLAGLWEFPSVEWEEE-ADGEEALLSALKKALRL 58 (118)
T ss_pred CCCCCCCCcceeCCCccccCC-cCHHHHHHHHHHHHhCc
Confidence 54444 35999999999987 89999999999999764
No 94
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=96.54 E-value=0.002 Score=57.48 Aligned_cols=38 Identities=29% Similarity=0.311 Sum_probs=31.3
Q ss_pred cCeeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhC
Q 023875 132 TGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETG 172 (276)
Q Consensus 132 ~~rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETG 172 (276)
++-..|+-.+ .|.|||||+|+| |..-.+.+||+.||.=
T Consensus 141 ~vavkr~d~~--~WAiPGGmvdpG-E~vs~tLkRef~eEa~ 178 (275)
T KOG4195|consen 141 FVAVKRPDNG--EWAIPGGMVDPG-EKVSATLKREFGEEAM 178 (275)
T ss_pred EEEEecCCCC--cccCCCCcCCch-hhhhHHHHHHHHHHHH
Confidence 3444566555 588999999999 9999999999999973
No 95
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=93.68 E-value=0.41 Score=41.17 Aligned_cols=91 Identities=18% Similarity=0.218 Sum_probs=51.4
Q ss_pred eeecCCCC--CCHHHH----HHHHHHHHhCCccc-ccceeeeccccCCCCceeeecCCCccCeEEEE---EEEEEeehhh
Q 023875 149 AGMLDDDK--GDFVGT----AVREVEEETGIQLK-LEDMIDLTAFLYPSTGCKFFPSAGGCDEEISL---FLYRGRVDKE 218 (276)
Q Consensus 149 aG~vD~G~--Es~~eA----A~REL~EETGl~~~-~~~l~~L~~l~~~~~~~~~y~spg~~~e~i~l---fla~~~~~~~ 218 (276)
||++..++ ++..+. +.|||.||.++.-. ...+..|+- +..+ ...-..+|+ |+.+....
T Consensus 97 GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGl---------INdd-~neVgkVHiG~lf~~~~k~n-- 164 (203)
T COG4112 97 GGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGL---------INDD-TNEVGKVHIGALFLGRGKFN-- 164 (203)
T ss_pred ccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeee---------ecCC-CcccceEEEEEEEEeecccc--
Confidence 56666542 344433 77999999999732 135667662 3222 222234554 44433211
Q ss_pred HHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcCChhHHHHH
Q 023875 219 IIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAI 260 (276)
Q Consensus 219 ~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~d~ktl~al 260 (276)
.. ...+.+.++++|+.++++.+.-.+-.+-+++
T Consensus 165 -------dv--evKEkd~~~~kwik~~ele~~y~~~EtWS~~ 197 (203)
T COG4112 165 -------DV--EVKEKDLFEWKWIKLEELEKFYGVMETWSKI 197 (203)
T ss_pred -------ce--eeeecceeeeeeeeHHHHHHHhhhhHHHHHH
Confidence 01 2356788999999999998844343443333
No 96
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=93.68 E-value=0.021 Score=53.76 Aligned_cols=85 Identities=24% Similarity=0.264 Sum_probs=55.1
Q ss_pred EEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeecCCCccCeEEEEEEEEEeehhhHHHHh
Q 023875 144 ILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQL 223 (276)
Q Consensus 144 ~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~spg~~~e~i~lfla~~~~~~~~i~~~ 223 (276)
.|.+|.|++..+ |+-..||.||+.||||.+... .+.. . .+-.-..-++.+.+|+..+...... +
T Consensus 107 sw~fprgK~~kd-esd~~caiReV~eetgfD~sk-ql~~-~----------e~Ie~nI~dq~~~~fIi~gvs~d~~---f 170 (348)
T KOG2937|consen 107 SWSFPRGKISKD-ESDSDCAIREVTEETGFDYSK-QLQD-N----------EGIETNIRDQLVRLFIINGVSEDTN---F 170 (348)
T ss_pred cccccCcccccc-chhhhcchhcccchhhcCHHH-Hhcc-c----------cCcccchhhceeeeeeeccceeeee---c
Confidence 599999999997 999999999999999999873 1211 1 1111234566777777643321110 0
Q ss_pred cCCCCCCCCCCceEEEEEEchhhHhh
Q 023875 224 QGKETGLRDHGELIKVRVVPYRELWR 249 (276)
Q Consensus 224 ~g~~~g~~d~~E~i~v~wv~leel~~ 249 (276)
. .+--.|.....|..++++..
T Consensus 171 -~----~~v~~eis~ihW~~l~~l~~ 191 (348)
T KOG2937|consen 171 -N----PRVRKEISKIHWHYLDHLVP 191 (348)
T ss_pred -c----hhhhccccceeeeehhhhcc
Confidence 0 12335666788999998843
No 97
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.09 E-value=0.12 Score=45.68 Aligned_cols=76 Identities=24% Similarity=0.191 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHHHHhCCcccc---cceeeeccccCCCCceeeecCC--Cc--cCeEEEEEEEEEeehhhHHHHhcCCCCC
Q 023875 157 GDFVGTAVREVEEETGIQLKL---EDMIDLTAFLYPSTGCKFFPSA--GG--CDEEISLFLYRGRVDKEIIMQLQGKETG 229 (276)
Q Consensus 157 Es~~eAA~REL~EETGl~~~~---~~l~~L~~l~~~~~~~~~y~sp--g~--~~e~i~lfla~~~~~~~~i~~~~g~~~g 229 (276)
.....||+|-|.-|+||.... +++.+|+. ..|-.+ |. -+|.-++.+..+.. +-
T Consensus 103 lGVr~AAqRkL~~ELGIp~e~v~pee~~~ltr--------ihYkA~sdg~wGEhEiDYiL~~~~~~------------~~ 162 (225)
T KOG0142|consen 103 LGVRRAAQRKLKAELGIPLEEVPPEEFNFLTR--------IHYKAPSDGIWGEHEIDYILFLVKDV------------TL 162 (225)
T ss_pred HHHHHHHHHHHHHhhCCCccccCHHHccccee--------eeeecCCCCCcccceeeEEEEEeccC------------CC
Confidence 357889999999999997653 46777764 244333 33 23333444443322 22
Q ss_pred CCCCCceEEEEEEchhhHhhhcC
Q 023875 230 LRDHGELIKVRVVPYRELWRTTP 252 (276)
Q Consensus 230 ~~d~~E~i~v~wv~leel~~~i~ 252 (276)
.++++|..+++||+.+|++.+++
T Consensus 163 nPnpnEv~e~ryvs~eelkel~~ 185 (225)
T KOG0142|consen 163 NPNPNEVSEIRYVSREELKELVA 185 (225)
T ss_pred CCChhhhhHhheecHHHHHHHHh
Confidence 56789999999999999999987
No 98
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=88.80 E-value=0.92 Score=35.55 Aligned_cols=87 Identities=18% Similarity=0.137 Sum_probs=39.5
Q ss_pred eeCCCC--eEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeecCCCccCeEEEEEEEEEe
Q 023875 137 RVPTGR--VILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGR 214 (276)
Q Consensus 137 R~~~g~--~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~spg~~~e~i~lfla~~~ 214 (276)
|+..|- .+||||.--++. ++..+.+.+.+.+..|+.+.. ...++. +- ..+++...++......
T Consensus 16 Rp~~gll~GLwefP~~e~~~--~~~~~~l~~~~~~~~~~~~~~--~~~~~~---------v~--H~fSH~~~~~~~~~~~ 80 (114)
T PF14815_consen 16 RPEKGLLAGLWEFPLIESDE--EDDEEELEEWLEEQLGLSIRS--VEPLGT---------VK--HVFSHRRWTIHVYEVE 80 (114)
T ss_dssp --SSSTTTT-EE--EEE-SS--S-CHHHHHHHTCCSSS-EEEE---S-SEE---------EE--EE-SSEEEEEEEEEEE
T ss_pred CCCCChhhcCcccCEeCccC--CCCHHHHHHHHHHHcCCChhh--heecCc---------EE--EEccceEEEEEEEEEE
Confidence 655553 499999877774 334555666666778877642 223321 11 1344555544333332
Q ss_pred ehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhc
Q 023875 215 VDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT 251 (276)
Q Consensus 215 ~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i 251 (276)
.... ...+.....|++.+++.+..
T Consensus 81 ~~~~-------------~~~~~~~~~W~~~~~l~~~~ 104 (114)
T PF14815_consen 81 VSAD-------------PPAEPEEGQWVSLEELDQYP 104 (114)
T ss_dssp EE-S-------------S----TTEEEEEGGGGGGS-
T ss_pred ecCC-------------CCCCCCCcEEEEHHHHhhCC
Confidence 2211 01134467899999998753
No 99
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=78.60 E-value=1.4 Score=40.38 Aligned_cols=108 Identities=16% Similarity=0.246 Sum_probs=67.6
Q ss_pred EeceeecCCCCCCHHHHHHHHHHHHhCCccc-ccceeeeccccCCCCceeee---cCCCccCeEEEEEEEEEeehhhHHH
Q 023875 146 ELPAGMLDDDKGDFVGTAVREVEEETGIQLK-LEDMIDLTAFLYPSTGCKFF---PSAGGCDEEISLFLYRGRVDKEIIM 221 (276)
Q Consensus 146 ElPaG~vD~G~Es~~eAA~REL~EETGl~~~-~~~l~~L~~l~~~~~~~~~y---~spg~~~e~i~lfla~~~~~~~~i~ 221 (276)
.+.||++--| -...++|++|..||+.+... ...++..|.. ++| .-.+..-+..++|=.+ .+...|
T Consensus 168 N~vaGGl~~g-~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~V-------Sy~~~esr~~~~pe~qYVfDL~--l~~d~i- 236 (306)
T KOG4313|consen 168 NMVAGGLSVG-FGIKETAIKEAAEEANLPSDLVKNLVSAGCV-------SYYKFESRQGLFPETQYVFDLE--LPLDFI- 236 (306)
T ss_pred hhhccccccC-chHHHHHHHHHHHhcCCchhhHhcceeccee-------EEEeeehhhccCccceEEEecc--Cchhhc-
Confidence 5679999988 89999999999999999873 2455555432 122 1123334444555332 222222
Q ss_pred HhcCCCCCCCCCCceEEEEEEchhhHhhhcC--ChhHHHHHHHHHHHHhCCC
Q 023875 222 QLQGKETGLRDHGELIKVRVVPYRELWRTTP--DAKVLTAIALYEMASKEEL 271 (276)
Q Consensus 222 ~~~g~~~g~~d~~E~i~v~wv~leel~~~i~--d~ktl~al~l~~~l~~~g~ 271 (276)
+ ...++|......+++.|..+.+. |-|.-.|+-+-..+.+.|.
T Consensus 237 ------P-~~nDGEV~~F~Lltl~~~v~~l~~k~FKpncAlV~iDflirHg~ 281 (306)
T KOG4313|consen 237 ------P-QNNDGEVQAFELLTLKDCVERLFTKDFKPNCALVVIDFLIRHGT 281 (306)
T ss_pred ------C-CCCCCceeeEeeecHHHHHHHHHhhccCCCcceEEEEEeeccee
Confidence 1 34788999999999999877764 6566555544344444443
No 100
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=74.61 E-value=14 Score=32.54 Aligned_cols=104 Identities=21% Similarity=0.258 Sum_probs=53.7
Q ss_pred EEEeceeecCCCCCCHHHHHHHHHHHHhCCccccc-cee---eeccccCCCCceeeecC----CCccCeEEEEEEEEEee
Q 023875 144 ILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLE-DMI---DLTAFLYPSTGCKFFPS----AGGCDEEISLFLYRGRV 215 (276)
Q Consensus 144 ~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~-~l~---~L~~l~~~~~~~~~y~s----pg~~~e~i~lfla~~~~ 215 (276)
++-||||.+.+| |+.+++.+|.|.+-.|..-... ++. +++..+-+..-..+||. .....|.+.+|+++-..
T Consensus 69 ~fkLPGg~l~~g-E~e~~gLkrkL~~~l~~~~~~~~~w~vge~l~~WwRp~Fe~~~YPYlP~HitkPKE~~klylV~Lpe 147 (188)
T PF13869_consen 69 FFKLPGGRLRPG-EDEIEGLKRKLTEKLSPEDGVDPDWEVGECLGTWWRPNFEPFMYPYLPPHITKPKECIKLYLVQLPE 147 (188)
T ss_dssp EEE-SEEE--TT---HHHHHHHHHHHHHB-SSSS----EEEEEEEEEEESSSSS--BSS--TT-SS-SEEEEEEEEE--S
T ss_pred cccCCccEeCCC-CChhHHHHHHHHHHcCCCcCCCCCcEecCEEEEEeCCCCCCCCCCCCCcccCChhheeEEEEEecCC
Confidence 578999999998 9999999999999998864221 222 34433333333445553 12345788888875321
Q ss_pred hhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcC-ChhHHHHH
Q 023875 216 DKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP-DAKVLTAI 260 (276)
Q Consensus 216 ~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~-d~ktl~al 260 (276)
.. ...-....++.-+|+=|+.+-.. -|-+++++
T Consensus 148 ~~------------~F~VPkn~kL~AvPLFeLydN~~~YG~~issi 181 (188)
T PF13869_consen 148 KC------------LFAVPKNMKLVAVPLFELYDNAQRYGPIISSI 181 (188)
T ss_dssp SE------------EEEEETTSEEEEEEHHHHTTTHHHHHHHHTTH
T ss_pred Cc------------eEecCCCCeEEeecHhhhhcChhhcCchhhcc
Confidence 11 01111234677788888876543 34444444
No 101
>PLN03143 nudix hydrolase; Provisional
Probab=58.65 E-value=30 Score=32.40 Aligned_cols=34 Identities=12% Similarity=0.151 Sum_probs=26.0
Q ss_pred ceEEEEEEEEEeCCCcEEEEEEEEeeeeecCCEEEEEEE
Q 023875 85 WLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKF 123 (276)
Q Consensus 85 ~~~~l~~~~~~~~~G~~~~~~v~~~~v~~~g~~V~vl~~ 123 (276)
-|++++.+.+..+||....+.|..+ |++|+||++
T Consensus 103 gflkv~~d~~~l~~G~~~~~~v~~r-----g~aVaVL~~ 136 (291)
T PLN03143 103 GFLKFKADIIDKETGQKVPGIVFAR-----GPAVAVLIL 136 (291)
T ss_pred eEEEEEEEEEECCCCCEeeEEEEEc-----CCeEEEEEE
Confidence 4689999999999998655555544 678888776
No 102
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=49.83 E-value=20 Score=31.24 Aligned_cols=31 Identities=29% Similarity=0.432 Sum_probs=27.9
Q ss_pred CCeEEEeceeecCCCCCCHHHHHHHHHHHHhC
Q 023875 141 GRVILELPAGMLDDDKGDFVGTAVREVEEETG 172 (276)
Q Consensus 141 g~~~wElPaG~vD~G~Es~~eAA~REL~EETG 172 (276)
|.-++-+|||.+++| |+-++..+|=+-|-+|
T Consensus 92 g~tf~KLPGG~L~pG-E~e~~Gl~r~l~~~Lg 122 (221)
T KOG1689|consen 92 GNTFFKLPGGRLRPG-EDEADGLKRLLTESLG 122 (221)
T ss_pred CCEEEecCCCccCCC-cchhHHHHHHHHHHhc
Confidence 345778999999999 9999999999999999
No 103
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=40.76 E-value=26 Score=23.17 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=11.9
Q ss_pred eceeecCCCCCCHHHHHHHHHHHHh
Q 023875 147 LPAGMLDDDKGDFVGTAVREVEEET 171 (276)
Q Consensus 147 lPaG~vD~G~Es~~eAA~REL~EET 171 (276)
.-||..-+| --+.-.|.||+-||.
T Consensus 13 ClggLasPg-Pvp~~~alkELIeEL 36 (43)
T PF03487_consen 13 CLGGLASPG-PVPSSTALKELIEEL 36 (43)
T ss_dssp -----------S-HHHHHHHHHHHH
T ss_pred HhcccCCCC-CCCchHHHHHHHHHH
Confidence 346777787 778889999999996
No 104
>PF14443 DBC1: DBC1
Probab=35.64 E-value=91 Score=25.71 Aligned_cols=36 Identities=31% Similarity=0.373 Sum_probs=26.8
Q ss_pred CCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCccc
Q 023875 141 GRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLK 176 (276)
Q Consensus 141 g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~ 176 (276)
|.|.-+|=||--+.+...++.+|+|=++|-||++..
T Consensus 24 G~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS 59 (126)
T PF14443_consen 24 GPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLS 59 (126)
T ss_pred CcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchh
Confidence 445545556655554357899999999999999986
No 105
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=24.18 E-value=1.1e+02 Score=22.32 Aligned_cols=36 Identities=17% Similarity=0.449 Sum_probs=25.7
Q ss_pred eeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCc
Q 023875 134 QKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQ 174 (276)
Q Consensus 134 rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~ 174 (276)
+||++|.+. ...+| +-++ |+.--.-.|++.+++|+.
T Consensus 31 ~q~kHp~~~-~vtVP---~Hp~-~dl~~Gtl~~Ilkqa~l~ 66 (66)
T COG1724 31 RQYKHPDGG-RVTVP---FHPG-EDLPPGTLRSILKQAGLS 66 (66)
T ss_pred eEEEcCCCC-EEEec---CCCc-cccCcHHHHHHHHHhcCC
Confidence 568888843 44566 3466 777788889999988863
No 106
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=23.33 E-value=3.4e+02 Score=25.08 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=28.9
Q ss_pred eEEEeceeec-CCCCCCHHHHHHHHHHHHhCCccc
Q 023875 143 VILELPAGML-DDDKGDFVGTAVREVEEETGIQLK 176 (276)
Q Consensus 143 ~~wElPaG~v-D~G~Es~~eAA~REL~EETGl~~~ 176 (276)
..|-||-+-. +.+ ++...+|.|+|++=.|=...
T Consensus 152 s~w~fP~~~~s~~~-~~lr~~ae~~Lk~~~ge~~~ 185 (263)
T KOG4548|consen 152 SVWIFPNRQFSSSE-KTLRGHAERDLKVLSGENKS 185 (263)
T ss_pred ceeeCCCcccCCcc-chHHHHHHHHHHHHhcchhh
Confidence 4899999999 887 99999999999998886653
Done!