BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023876
(276 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
pdb|2IQJ|B Chain B, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
Length = 134
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 62/90 (68%), Gaps = 4/90 (4%)
Query: 6 SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
S + GVFICI+C+GIHR+LGVHIS+V SV LD+WT EQ+ + EM GN N+ YEAY P
Sbjct: 42 SWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEM-GNGKANRLYEAYLP 100
Query: 66 GNLKKPSPNSFIDERSDFIRRKYEKLEFFN 95
++P + ++ FIR KYEK ++ +
Sbjct: 101 ETFRRPQIDPAVE---GFIRDKYEKKKYMD 127
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1
Length = 141
Score = 80.5 bits (197), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Query: 6 SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
S + GVFICI+C+GIHR+LGVHIS+V SV LD+WT EQ+ + +M GN YEA P
Sbjct: 44 SWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDM-GNTKARLLYEANLP 102
Query: 66 GNLKKPSPNSFID 78
N ++P + ++
Sbjct: 103 ENFRRPQTDQAVE 115
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
Query: 6 SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
S++ GV +CI+CSGIHRSLGVH SKV S+ LD W E V + E+ GN+ +N+ YEA
Sbjct: 60 SINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL-GNVIINQIYEARVE 118
Query: 66 G-NLKKPSPNSFIDERSDFIRRKYEKLEFFN 95
+KKP P+ E+ +I KY + +F
Sbjct: 119 AMAVKKPGPSCSRQEKEAWIHAKYVEKKFLT 149
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
Query: 6 SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
S++ GV +CI+CSGIHRSLGVH SKV S+ LD W E V + E+ GN+ +N+ YEA
Sbjct: 60 SINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL-GNVIINQIYEARVE 118
Query: 66 G-NLKKPSPNSFIDERSDFIRRKYEKLEFFN 95
+KKP P+ E+ +I KY + +F
Sbjct: 119 AMAVKKPGPSCSRQEKEAWIHAKYVEKKFLT 149
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
Query: 6 SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
S++ GV +CI+CSGIHRSLGVH SKV S+ LD W E V + E+ GN+ +N+ YEA
Sbjct: 60 SINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL-GNVIINQIYEARVE 118
Query: 66 G-NLKKPSPNSFIDERSDFIRRKYEKLEFFN 95
+KKP P+ E+ +I KY + +F
Sbjct: 119 AMAVKKPGPSCSRQEKEAWIHAKYVEKKFLT 149
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Head Group Of Pip3
Length = 386
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 5/108 (4%)
Query: 3 DIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEA 62
D S + GVFIC+ CSGIHR++ +SKV SV+LD W QV+ +A GN A ++E+
Sbjct: 46 DWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMASH-GNDAARARFES 103
Query: 63 YTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYPAPHR 110
P +P+P+ R +IR KYE+ EF ++Q PY A +R
Sbjct: 104 KVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEKQE---PYSAGYR 148
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 392
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 5/108 (4%)
Query: 3 DIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEA 62
D S + GVFIC+ CSGIHR++ +SKV SV+LD W QV+ +A GN A ++E+
Sbjct: 48 DWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMASH-GNDAARARFES 105
Query: 63 YTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYPAPHR 110
P +P+P+ R +IR KYE+ EF ++Q PY A +R
Sbjct: 106 KVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEKQE---PYSAGYR 150
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 169 LIKVNVVKGTNLAVRDVM-TSDPYVILALGH------QTVKTRVIKSNLNPVWNESLMLS 221
+++V V+ G LA +D++ SDPYV + L +V+T+ IK +LNP WNE ++
Sbjct: 21 IVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR 80
Query: 222 IPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISM 268
+ L V+D++ T DDF+G ++ + PL T E P +
Sbjct: 81 VHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTF 127
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 169 LIKVNVVKGTNLAVRDVM-TSDPYVILALGH------QTVKTRVIKSNLNPVWNESLMLS 221
+++V V+ G LA +D++ SDPYV + L +V+T+ IK +LNP WNE ++
Sbjct: 9 VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68
Query: 222 IPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISM 268
+ + V+D++ T DDF+G ++ + PL T E P +
Sbjct: 69 VLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTF 115
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
pdb|3SUB|B Chain B, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
Length = 163
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 50/78 (64%), Gaps = 9/78 (11%)
Query: 3 DIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEA 62
D S++ G+F+CI CSG+HRSLGVHIS V S+K+D +T+EQ+ + + G NKK +
Sbjct: 34 DWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGG-----NKKCQT 88
Query: 63 YTPGNLKKPSPNSFIDER 80
Y L+ + FI ER
Sbjct: 89 Y----LENYGISDFIPER 102
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 169 LIKVNVVKGTNLAVRDVM-TSDPYVILAL-------GHQTVKTRVIKSNLNPVWNESLML 220
+++V VV G +LA +D+ SDPYV L+L V+T+ IK LNP WNE
Sbjct: 22 ILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF 81
Query: 221 SIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISM 268
+ + L V+D++ T DDF+G ++ + L T E P +
Sbjct: 82 RVNPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDPTMERPYTF 129
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 6 SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
S + G+ CI+CSGIHR LGVH S++ S+ LD ++ LA+ GN N+ E P
Sbjct: 32 STNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSEL-LLAKNIGNAGFNEIMECCLP 90
Query: 66 G-NLKKPSPNSFIDERSDFIRRKY 88
+ KP+P S + R D+I KY
Sbjct: 91 SEDPVKPNPGSDMIARKDYITAKY 114
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 167 VGLIKVNVVKGTNL-AVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPEN 225
+G + V+V++ T L A + S+PY +++G Q+ TR I+ LNP WN + I +
Sbjct: 386 IGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDL 445
Query: 226 IPPLKVL-VYDKDTFTTDDFMGDAEIDIQPLVTAARA 261
+ L ++D+D F+ DDF+G EI + + T +
Sbjct: 446 YQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQES 482
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 6 SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
S + GV CI+CSG+HR LGV S++ S+ LD ++ LA GN + N+ EA P
Sbjct: 57 STNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSEL-LLALNMGNTSFNEVMEAQLP 115
Query: 66 GNLK-KPSPNSFIDERSDFIRRKYEKLEF 93
+ KPS S + R D+I KY + F
Sbjct: 116 SHGGPKPSAESDMGTRRDYIMAKYVEHRF 144
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 6 SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
S + GV CI+CSG+HR LGV S++ S+ LD ++ LA GN + N+ EA P
Sbjct: 38 STNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSEL-LLALNMGNTSFNEVMEAQLP 96
Query: 66 GNLK-KPSPNSFIDERSDFIRRKYEKLEF 93
+ KPS S + R D+I KY + F
Sbjct: 97 SHGGPKPSAESDMGTRRDYIMAKYVEHRF 125
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 164 VEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSI 222
V+ VG+++V V+K +L D SDP+ +L LG+ ++T + NLNP WN+ I
Sbjct: 9 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 68
Query: 223 PENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARAC 262
+ L+V V+D+D DF+G I + + C
Sbjct: 69 KDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNC 108
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 168 GLIKVNVVKGTNLAVRDVMTS-DPYVILALGHQTVKTRVIKS-NLNPVWNESLMLSIPEN 225
G ++V +V L D + + DPYV L Q K+ V + P WNE+ + ++ E
Sbjct: 10 GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG 69
Query: 226 IPPLKVLVYDKDTFTTDDFMGDAEIDIQPL 255
LK ++DKD T DD +G+A I ++P+
Sbjct: 70 TTELKAKIFDKDVGTEDDAVGEATIPLEPV 99
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger
Protein
Length = 144
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 36/49 (73%), Gaps = 2/49 (4%)
Query: 6 SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDE-WTNEQVDALAEMGGN 53
S++ GVF+CI CSG+HRSLGVH+S + S +LD W Q+ + ++GGN
Sbjct: 52 SITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCM-QVGGN 99
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Query: 6 SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGN 53
S++ G++IC++CSG HR LGVH+S V SV +D+W + +++ + + GGN
Sbjct: 52 SVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKM-KAGGN 98
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of
Adp-Ribosylation Factor Gtpaseactivating Protein 3
(Arfgap 3)
Length = 149
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 6 SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDE-WTNEQVDALAEMGGNIAVNKKYEAY 63
S++ GVF+CI CSG HRSLGVH+S + S +LD W+ Q+ + ++GGN + + + +
Sbjct: 44 SITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCM-QVGGNASASSFFHQH 101
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
pdb|3DWD|B Chain B, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
Length = 147
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Query: 6 SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGN 53
S++ G++IC++CSG HR LGVH+S V SV +D+W + +++ + + GGN
Sbjct: 53 SVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKM-KAGGN 99
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 170 IKVNVVKGTNLAVRD-VMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPP 228
I + VV L +D +SDPYV + +G +T+ I NLNPVW E+ +
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 78
Query: 229 LKVLVYDKD-----------TFTTDDFMGDAEIDIQPL 255
+KV V D+D +DDF+G I+++ L
Sbjct: 79 IKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL 116
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 188 SDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPENIPP--LKVLVYDKDTFT 240
SDPYV L L KT+ IKS+LNP WNE+ + E+ L V ++D D +
Sbjct: 193 SDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTS 252
Query: 241 TDDFMGDAEIDIQPLVTAA 259
+DFMG I L A
Sbjct: 253 RNDFMGSLSFGISELQKAG 271
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
pdb|2OWA|B Chain B, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
Length = 138
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 6 SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGN 53
SLS VFIC+ CS HR +GVHIS V S LD++T Q+ ++GGN
Sbjct: 51 SLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQL-VRMDIGGN 97
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Query: 170 IKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSI- 222
I V V + NL D SDPYV L L KTR +K+ LNPVWNE+ + ++
Sbjct: 22 IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLK 81
Query: 223 PENIP-PLKVLVYDKDTFTTDDFMGDAEIDIQPLVTA 258
P ++ L V V+D D + +DFMG + L+ A
Sbjct: 82 PGDVERRLSVEVWDWDRTSRNDFMGAMSFGVSELLKA 118
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 188 SDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPENIPP--LKVLVYDKDTFT 240
SDPYV L L KT+ IK +LNP WNE+ + E+ L V ++D D +
Sbjct: 52 SDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTS 111
Query: 241 TDDFMGDAEIDIQPLVTAA 259
+DFMG I L A
Sbjct: 112 RNDFMGSLSFGISELQKAG 130
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 188 SDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSI--PENIPPLKVLVYDKDTFT 240
SDPYV L L KT+ I+S LNP WNES + + L V ++D D T
Sbjct: 38 SDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTT 97
Query: 241 TDDFMGDAEIDIQPLV 256
+DFMG + L+
Sbjct: 98 RNDFMGSLSFGVSELM 113
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 188 SDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSI--PENIPPLKVLVYDKDTFT 240
SDPYV L L KT+ I+S LNP WNES + + L V ++D D T
Sbjct: 37 SDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTT 96
Query: 241 TDDFMGDAEIDIQPLV 256
+DFMG + L+
Sbjct: 97 RNDFMGSLSFGVSELM 112
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 14/94 (14%)
Query: 170 IKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPEN 225
+ V ++K L +D TSDP+V + L ++T+V + NLNP WNE+ + E
Sbjct: 28 LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF---EG 84
Query: 226 IPPLKVL-------VYDKDTFTTDDFMGDAEIDI 252
P KV+ V D D F+ +D +G+ I +
Sbjct: 85 FPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPL 118
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 167 VGLIKVNVVKGTNLAVRDVMT-SDPYVILALGHQ-----TVKTRVIKSNLNPVWNESLML 220
GL+ V ++K +NL D+ SDPYV +L + KT + K+ LNP +NE+L+
Sbjct: 151 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF 210
Query: 221 SI-PENIP--PLKVLVYDKDTFTTDDFMG 246
+ PE++ L + V D D ++ +G
Sbjct: 211 DVAPESVENVGLSIAVVDYDCIGHNEVIG 239
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 172 VNVVKGTNLAVRDVMT-SDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPENIP 227
V +++ +L +D SDPYV + L + +T+V + LNP++NE+ S+P
Sbjct: 24 VRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAEL 83
Query: 228 PLKVL---VYDKDTFTTDDFMGDAEID 251
+ L VYD D F+ D +G +D
Sbjct: 84 AQRKLHFSVYDFDRFSRHDLIGQVVLD 110
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 167 VGLIKVNVVKGTNLAVRDVMT-SDPYVILALGHQ-----TVKTRVIKSNLNPVWNESLML 220
GL+ V ++K +NL D+ SDPYV +L + KT + K+ LNP +NE+L+
Sbjct: 152 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF 211
Query: 221 SI-PENIP--PLKVLVYDKDTFTTDDFMG 246
+ PE++ L + V D D ++ +G
Sbjct: 212 DVAPESVENVGLSIAVVDYDCIGHNEVIG 240
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 172 VNVVKGTNLAVRDVMT-SDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPENIP 227
V +++ +L +D SDPYV + L + +T+V + LNP++NE+ S+P
Sbjct: 25 VRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAEL 84
Query: 228 PLKVL---VYDKDTFTTDDFMGDAEID 251
+ L VYD D F+ D +G +D
Sbjct: 85 AQRKLHFSVYDFDRFSRHDLIGQVVLD 111
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 188 SDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSI--PENIPPLKVLVYDKDTFT 240
SDPYV L L KT+ I+S LNP WNES + + L V ++D D T
Sbjct: 39 SDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTT 98
Query: 241 TDDFMGDAEIDIQPL 255
+DF G + L
Sbjct: 99 RNDFXGSLSFGVSEL 113
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 172 VNVVKGTNLAVRDVM-TSDPYV---ILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIP 227
V +++ L D+ TSDPYV +L + +T+V + LNPV+NE +P +
Sbjct: 23 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 82
Query: 228 PLKVL---VYDKDTFTTDDFMGDAEI 250
K L VYD D F+ D +G+ ++
Sbjct: 83 AGKTLVMAVYDFDRFSKHDIIGEFKV 108
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 168 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQ-----TVKTRVIKSNLNPVWNESLMLS 221
G + V +++ NL DV SDPYV + L KT + K+ LNP +NES
Sbjct: 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 209
Query: 222 IP-ENIPPLKVL--VYDKDTFTTDDFMG 246
+P E I ++V+ V D D +D +G
Sbjct: 210 VPFEQIQKVQVVVTVLDYDKIGKNDAIG 237
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 60/105 (57%), Gaps = 19/105 (18%)
Query: 167 VGLIKVNVVKGTNLAVRDVM-TSDPYVILAL----GHQTV----------KTRVIKSNLN 211
+G + +++++ NL RD SDP+V + L G V +T+ ++ +LN
Sbjct: 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76
Query: 212 PVWNESLM---LSIPENIPP-LKVLVYDKDTFTTDDFMGDAEIDI 252
P WN++++ +S+ + + L+V V+D D F+++DF+G+ ID+
Sbjct: 77 PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDL 121
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 170 IKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKS-----NLNPVWNESLMLSIP 223
I VN++K NL D+ TSDPYV + L ++ + K+ NLNP++NES IP
Sbjct: 18 IIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIP 77
Query: 224 -ENIPPLKVL--VYDKDTFTTDDFMG 246
E + ++ V DKD + +D +G
Sbjct: 78 TEKLRETTIIITVMDKDKLSRNDVIG 103
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 172 VNVVKGTNLAVRDVM-TSDPYV---ILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIP 227
V +++ L D+ TSDPYV +L + +T+V + LNPV+NE +P +
Sbjct: 21 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 80
Query: 228 PLKVL---VYDKDTFTTDDFMGDAEI 250
K L VYD D F+ D +G+ ++
Sbjct: 81 GGKTLVMAVYDFDRFSKHDIIGEFKV 106
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 172 VNVVKGTNLAVRDVM-TSDPYV---ILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIP 227
V +++ L D+ TSDPYV +L + +T+V + LNPV+NE +P +
Sbjct: 38 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 97
Query: 228 PLKVL---VYDKDTFTTDDFMGDAEI 250
K L VYD D F+ D +G+ ++
Sbjct: 98 GGKTLVMAVYDFDRFSKHDIIGEFKV 123
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 172 VNVVKGTNLAVRDVM-TSDPYV---ILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIP 227
V +++ L D+ TSDPYV +L + +T+V + LNPV+NE +P +
Sbjct: 38 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 97
Query: 228 PLKVL---VYDKDTFTTDDFMGDAEI 250
K L VYD D F+ D +G+ ++
Sbjct: 98 GGKTLVMAVYDFDRFSKHDIIGEFKV 123
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 188 SDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLML-SIPE---NIPPLKVLVYDKDT 238
+DPYV L L ++T+ +++ NPVWNE+L I E L++ V D+D
Sbjct: 50 ADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDK 109
Query: 239 FTTDDFMGDAEIDIQPLVTAAR 260
F ++F+G+ ++ L R
Sbjct: 110 FGHNEFIGETRFSLKKLKANQR 131
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 172 VNVVKGTNLAVRDVM-TSDPYV---ILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIP 227
V +++ L D+ TSDPYV +L + +T+V + LNPV+NE +P +
Sbjct: 46 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 105
Query: 228 PLKVL---VYDKDTFTTDDFMGDAEI 250
K L VYD D F+ D +G+ ++
Sbjct: 106 GGKTLVMAVYDFDRFSKHDIIGEFKV 131
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 188 SDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLML-SIPE---NIPPLKVLVYDKDT 238
+DPYV L L ++T+ +++ NPVWNE+L I E L++ V D+D
Sbjct: 48 ADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDK 107
Query: 239 FTTDDFMGDAEIDIQPLVTAAR 260
F ++F+G+ ++ L R
Sbjct: 108 FGHNEFIGETRFSLKKLKANQR 129
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 13/90 (14%)
Query: 172 VNVVKGTNLAVRD--VMTSDPYV---ILALGHQTVKTRVIKSNLNPVWNESLML------ 220
VN+ + L D MTSDPY+ IL VKTRV++ L+P ++E+
Sbjct: 26 VNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYT 85
Query: 221 SIPENIPPLKVLVYDKDTFTTDDFMGDAEI 250
I E +L +D+ F+ DD +G+ I
Sbjct: 86 QIQELALHFTILSFDR--FSRDDIIGEVLI 113
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Query: 168 GLIKVNVVKGTNLAVRDVMT-SDPYVILAL----GHQTV-KTRVIKSNLNPVWNESLMLS 221
GLI V +++ +LA D SDP+V L L G + KT++ K LNP +NE
Sbjct: 38 GLI-VGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFYD 96
Query: 222 IPEN---IPPLKVLVYDKDTFTTDDFMGDAEIDI 252
I + L + V+D D ++D++G ++ I
Sbjct: 97 IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGI 130
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Query: 168 GLIKVNVVKGTNLAVRDVMT-SDPYVILAL----GHQTV-KTRVIKSNLNPVWNESLMLS 221
GLI V +++ +LA D SDP+V L L G + KT++ K LNP +NE
Sbjct: 38 GLI-VGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 96
Query: 222 IPEN---IPPLKVLVYDKDTFTTDDFMGDAEIDI 252
I + L + V+D D ++D++G ++ I
Sbjct: 97 IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGI 130
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Query: 168 GLIKVNVVKGTNLAVRDVMT-SDPYVILAL----GHQTV-KTRVIKSNLNPVWNESLMLS 221
GLI V +++ +LA D SDP+V L L G + KT++ K LNP +NE
Sbjct: 16 GLI-VGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74
Query: 222 IPEN---IPPLKVLVYDKDTFTTDDFMGDAEIDI 252
I + L + V+D D ++D++G ++ I
Sbjct: 75 IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGI 108
>pdb|3NSJ|A Chain A, The X-Ray Crystal Structure Of Lymphocyte Perforin
Length = 540
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 185 VMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENI-----PPLKVLVYDKDTF 239
+D Y+ + G Q +T V+ +N NP W + + EN+ PL+V V+D D
Sbjct: 411 TTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDF---ENVLLSTGGPLRVQVWDADYG 467
Query: 240 TTDDFMGDAE 249
DD +G +
Sbjct: 468 WDDDLLGSCD 477
>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
pdb|3FDW|B Chain B, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
Length = 148
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 172 VNVVKGTNLAVRDVMT--SDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPE 224
V+V + LA D S+PYV L KT + + +NP+++E+L IPE
Sbjct: 27 VHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPE 86
Query: 225 NIPPLKVL---VYDKDTFTTDDFMGDAEIDI 252
++ + L V+ F + F+G+AEI +
Sbjct: 87 SLLAQRTLQFSVWHHGRFGRNTFLGEAEIQM 117
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 168 GLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIP 227
G+++V V +N+ DP V + + KT+ + + LNPVWNE L + IP
Sbjct: 7 GMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDL-RGIP 65
Query: 228 -----PLKVLVYDKDTFTTDDFMGDAEIDIQPL 255
L ++V D +T + +G A + ++ L
Sbjct: 66 LDFSSSLGIIVKDFETIGQNKLIGTATVALKDL 98
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein
Length = 140
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 6 SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65
+++ G F+C CSG R L +V S+ + +T ++++ L + G + +
Sbjct: 40 NMTVGSFVCTSCSGSLRGLNP-PHRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDD 98
Query: 66 GNLKKPSPNSFIDER--SDFIRRKYEKLEFFNFDEQA 100
+ P F D + +F++ KYEK ++ EQA
Sbjct: 99 RSSAIP---DFRDPQKVKEFLQEKYEKKRWYVPPEQA 132
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip
Length = 134
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 7 LSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPG 66
++ G F+C CSG R L +V S+ + +T ++++ L + G + +
Sbjct: 36 MTVGSFVCTSCSGSLRGLNP-PHRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDR 94
Query: 67 NLKKPSPNSFIDER--SDFIRRKYEKLEFFNFDEQALLCP 104
+ P F D + +F++ KYEK ++ EQA P
Sbjct: 95 SSAIP---DFRDPQKVKEFLQEKYEKKRWYVPPEQAKSGP 131
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 169 LIKVNVVKGTNLAVRDVM-TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSI-P 223
++ + K T A D++ T DPYV L + +TR +++NPVWNE+ + P
Sbjct: 22 VVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDP 81
Query: 224 ENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPL 255
L++ + D + + D+ +G A + +
Sbjct: 82 NQENVLEITLMDAN-YVMDETLGTATFTVSSM 112
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 170 IKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIP 223
+ V V+K +L DV SDPYV + L H KT V K N V+NE + IP
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 91
Query: 224 -ENIPPLKV--LVYDKDTFTTDDFMG 246
E++ + V LV D + + ++ +G
Sbjct: 92 CESLEEISVEFLVLDSERGSRNEVIG 117
>pdb|3FFZ|A Chain A, Domain Organization In Clostridium Butulinum Neurotoxin Type
E Is Unique: Its Implication In Faster Translocation
pdb|3FFZ|B Chain B, Domain Organization In Clostridium Butulinum Neurotoxin Type
E Is Unique: Its Implication In Faster Translocation
Length = 1252
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Query: 1 MGDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDE------WTNE-QVDALAEMGGN 53
+G+I +F + CS R +G+ + +LDE ++NE + L + GN
Sbjct: 1020 LGNIHVSDNILFKIVNCS-YTRYIGIRYFNIFDKELDETEIQTLYSNEPNTNILKDFWGN 1078
Query: 54 IAVNKKYEAYTPGNLKKPSPNSFIDERSD 82
+ K E Y LK PN+FID R D
Sbjct: 1079 YLLYDK-EYYLLNVLK---PNNFIDRRKD 1103
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 169 LIKVNVVKGTNLAVRDVM-TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSI-P 223
++ + K T A D++ T DPYV L + +TR +++NPVWNE+ + P
Sbjct: 7 VVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDP 66
Query: 224 ENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPL 255
L++ + D + + D+ +G A + +
Sbjct: 67 NQENVLEITLMDAN-YVMDETLGTATFTVSSM 97
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 168 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQ-----TVKTRVIKSNLNPVWNESLMLS 221
G + V +++ NL DV SDPYV + L KT + K+ LNP +NES
Sbjct: 18 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 77
Query: 222 IP-ENIPPLKVL--VYDKDTFTTDDFMG 246
+P E I ++V+ V D D +D +G
Sbjct: 78 VPFEQIQKVQVVVTVLDYDKIGKNDAIG 105
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 168 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQ-----TVKTRVIKSNLNPVWNESLMLS 221
G + V +++ NL DV SDPYV + L KT + K+ LNP +NES
Sbjct: 17 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 76
Query: 222 IP-ENIPPLKVL--VYDKDTFTTDDFMG 246
+P E I ++V+ V D D +D +G
Sbjct: 77 VPFEQIQKVQVVVTVLDYDKIGKNDAIG 104
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 168 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQ-----TVKTRVIKSNLNPVWNESLMLS 221
G + V +++ NL DV SDPYV + L KT + K+ LNP +NES
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84
Query: 222 IP-ENIPPLKVL--VYDKDTFTTDDFMG 246
+P E I ++V+ V D D +D +G
Sbjct: 85 VPFEQIQKVQVVVTVLDYDKIGKNDAIG 112
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 169 LIKVNVVKGTNLAVRDVM-TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSI-P 223
++ + K T A D++ T DPYV L + +TR +++NPVWNE+ + P
Sbjct: 22 VVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDP 81
Query: 224 ENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPL 255
L++ + D + + D+ +G A + +
Sbjct: 82 NQENVLEITLMDAN-YVMDETLGTATFTVSSM 112
>pdb|2NQ3|A Chain A, Crystal Structure Of The C2 Domain Of Human Itchy Homolog
E3 Ubiquitin Protein Ligase
Length = 173
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 190 PYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAE 249
PYV + + Q+ KT + +P W + L + I + L V+ T +D +G A
Sbjct: 59 PYVEVTVDGQSKKTEKCNNTNSPKWKQPLTV-IVTPVSKLHFRVWSHQTLKSDVLLGTAA 117
Query: 250 IDI 252
+DI
Sbjct: 118 LDI 120
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 172 VNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKV 231
V V G+ +AV V + + +L ++TV V +SN +++ S +I +P L
Sbjct: 308 VFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367
Query: 232 LVYDKDTFTT 241
V D D TT
Sbjct: 368 PVPDDDETTT 377
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,507,775
Number of Sequences: 62578
Number of extensions: 276680
Number of successful extensions: 610
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 533
Number of HSP's gapped (non-prelim): 70
length of query: 276
length of database: 14,973,337
effective HSP length: 97
effective length of query: 179
effective length of database: 8,903,271
effective search space: 1593685509
effective search space used: 1593685509
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)