Query 023876
Match_columns 276
No_of_seqs 320 out of 2503
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 07:18:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023876.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023876hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0703 Predicted GTPase-activ 100.0 3.3E-38 7.2E-43 267.0 7.9 92 2-97 36-127 (287)
2 smart00105 ArfGap Putative GTP 100.0 1.1E-34 2.4E-39 219.0 9.1 95 2-97 14-108 (112)
3 PF01412 ArfGap: Putative GTPa 100.0 5.2E-34 1.1E-38 216.8 5.9 93 1-95 23-115 (116)
4 COG5347 GTPase-activating prot 100.0 1.9E-30 4.2E-35 226.2 8.3 95 2-97 31-126 (319)
5 PLN03119 putative ADP-ribosyla 99.9 3.7E-28 8.1E-33 219.8 10.2 93 2-98 34-126 (648)
6 PLN03131 hypothetical protein; 99.9 2.8E-28 6E-33 222.4 8.6 92 2-97 34-125 (705)
7 KOG0705 GTPase-activating prot 99.9 1.8E-27 4E-32 214.9 5.8 92 2-95 524-615 (749)
8 KOG0704 ADP-ribosylation facto 99.9 1.6E-24 3.5E-29 185.6 5.4 92 2-95 30-126 (386)
9 PLN03114 ADP-ribosylation fact 99.9 8.1E-24 1.8E-28 182.6 8.4 96 2-98 33-130 (395)
10 KOG0706 Predicted GTPase-activ 99.9 6.5E-24 1.4E-28 187.7 6.2 63 2-65 34-96 (454)
11 KOG1030 Predicted Ca2+-depende 99.9 3.1E-22 6.7E-27 157.1 9.4 99 164-262 2-101 (168)
12 KOG0521 Putative GTPase activa 99.8 1.6E-22 3.4E-27 195.9 1.5 97 2-99 437-534 (785)
13 KOG0818 GTPase-activating prot 99.8 1E-21 2.2E-26 175.2 2.2 93 2-95 19-118 (669)
14 cd08677 C2A_Synaptotagmin-13 C 99.8 4.6E-20 9.9E-25 139.4 10.3 105 158-264 4-115 (118)
15 cd04016 C2_Tollip C2 domain pr 99.8 6.3E-19 1.4E-23 134.9 12.3 102 168-269 2-105 (121)
16 cd08379 C2D_MCTP_PRT_plant C2 99.8 9.8E-19 2.1E-23 134.7 11.1 100 169-268 1-110 (126)
17 cd04039 C2_PSD C2 domain prese 99.8 1.7E-18 3.7E-23 130.2 11.1 94 168-261 1-101 (108)
18 cd08381 C2B_PI3K_class_II C2 d 99.8 1.7E-18 3.6E-23 133.2 10.6 96 167-262 12-116 (122)
19 cd04038 C2_ArfGAP C2 domain pr 99.8 2.1E-18 4.6E-23 136.2 11.4 96 167-262 1-96 (145)
20 cd08682 C2_Rab11-FIP_classI C2 99.8 2.7E-18 5.8E-23 132.9 10.4 98 170-267 1-107 (126)
21 cd08394 C2A_Munc13 C2 domain f 99.8 1.1E-17 2.4E-22 127.7 11.6 90 167-260 1-90 (127)
22 cd08393 C2A_SLP-1_2 C2 domain 99.8 5.8E-18 1.3E-22 130.8 10.1 106 159-264 6-121 (125)
23 cd04029 C2A_SLP-4_5 C2 domain 99.7 7.3E-18 1.6E-22 130.2 10.0 107 159-265 6-122 (125)
24 KOG1117 Rho- and Arf-GTPase ac 99.7 5.3E-19 1.2E-23 166.3 4.2 96 2-99 309-406 (1186)
25 cd04028 C2B_RIM1alpha C2 domai 99.7 1.3E-17 2.8E-22 131.5 11.0 113 155-269 18-138 (146)
26 cd08376 C2B_MCTP_PRT C2 domain 99.7 1.9E-17 4.2E-22 126.1 11.5 100 169-268 1-102 (116)
27 cd08395 C2C_Munc13 C2 domain t 99.7 1.9E-17 4E-22 126.5 11.0 99 169-267 1-110 (120)
28 cd08385 C2A_Synaptotagmin-1-5- 99.7 1.6E-17 3.5E-22 128.1 10.8 110 157-266 5-121 (124)
29 cd08387 C2A_Synaptotagmin-8 C2 99.7 1.6E-17 3.5E-22 128.1 10.5 110 158-267 6-122 (124)
30 cd08375 C2_Intersectin C2 doma 99.7 3.4E-17 7.5E-22 128.2 12.0 94 164-257 11-106 (136)
31 cd08680 C2_Kibra C2 domain fou 99.7 2.5E-17 5.4E-22 126.7 10.5 100 160-259 6-115 (124)
32 cd08681 C2_fungal_Inn1p-like C 99.7 3.8E-17 8.3E-22 124.8 10.9 99 168-267 1-102 (118)
33 cd04042 C2A_MCTP_PRT C2 domain 99.7 4.9E-17 1.1E-21 124.8 11.3 99 170-268 2-102 (121)
34 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 6.4E-17 1.4E-21 124.5 11.7 100 169-268 1-102 (123)
35 cd08392 C2A_SLP-3 C2 domain fi 99.7 4.3E-17 9.4E-22 126.3 10.5 101 158-258 5-115 (128)
36 cd04030 C2C_KIAA1228 C2 domain 99.7 6.1E-17 1.3E-21 125.3 11.2 109 157-265 5-124 (127)
37 cd08407 C2B_Synaptotagmin-13 C 99.7 1.9E-17 4.1E-22 129.5 7.9 98 157-254 4-112 (138)
38 cd08688 C2_KIAA0528-like C2 do 99.7 6.2E-17 1.4E-21 122.2 10.3 88 170-257 1-94 (110)
39 cd08388 C2A_Synaptotagmin-4-11 99.7 7.4E-17 1.6E-21 125.1 10.6 102 157-258 5-115 (128)
40 cd04032 C2_Perforin C2 domain 99.7 1E-16 2.2E-21 123.6 11.1 91 166-256 26-118 (127)
41 cd04031 C2A_RIM1alpha C2 domai 99.7 8.8E-17 1.9E-21 124.0 10.4 97 159-255 7-113 (125)
42 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 9.4E-17 2E-21 129.4 10.9 102 166-267 25-136 (162)
43 cd04024 C2A_Synaptotagmin-like 99.7 1.2E-16 2.6E-21 123.7 11.0 90 168-257 1-94 (128)
44 cd04036 C2_cPLA2 C2 domain pre 99.7 1.2E-16 2.6E-21 122.3 10.7 97 170-267 2-103 (119)
45 cd04041 C2A_fungal C2 domain f 99.7 1.3E-16 2.7E-21 120.7 10.7 89 168-256 1-98 (111)
46 cd08406 C2B_Synaptotagmin-12 C 99.7 9.5E-17 2.1E-21 125.5 10.2 98 157-254 4-110 (136)
47 cd08386 C2A_Synaptotagmin-7 C2 99.7 1.2E-16 2.6E-21 123.3 10.6 109 158-266 6-122 (125)
48 cd04050 C2B_Synaptotagmin-like 99.7 1.5E-16 3.3E-21 119.1 10.5 88 169-259 1-90 (105)
49 cd08377 C2C_MCTP_PRT C2 domain 99.7 2.5E-16 5.4E-21 120.4 11.9 92 168-259 1-93 (119)
50 cd04009 C2B_Munc13-like C2 dom 99.7 1.3E-16 2.8E-21 124.6 10.3 101 160-260 8-121 (133)
51 cd08389 C2A_Synaptotagmin-14_1 99.7 1.2E-16 2.6E-21 123.2 9.8 109 156-265 4-120 (124)
52 cd04022 C2A_MCTP_PRT_plant C2 99.7 2.4E-16 5.2E-21 122.1 11.5 98 169-266 1-105 (127)
53 cd08685 C2_RGS-like C2 domain 99.7 1.5E-16 3.2E-21 121.8 10.1 99 166-264 10-116 (119)
54 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 2.1E-16 4.5E-21 121.4 10.9 99 170-268 2-103 (121)
55 cd08391 C2A_C2C_Synaptotagmin_ 99.7 2.2E-16 4.7E-21 121.0 11.0 100 168-268 1-108 (121)
56 cd04045 C2C_Tricalbin-like C2 99.7 3.2E-16 6.8E-21 120.2 11.5 102 168-270 1-104 (120)
57 cd08678 C2_C21orf25-like C2 do 99.7 1.8E-16 3.8E-21 122.6 10.2 97 170-267 1-99 (126)
58 cd08521 C2A_SLP C2 domain firs 99.7 2E-16 4.3E-21 121.7 10.4 104 161-264 7-120 (123)
59 cd04044 C2A_Tricalbin-like C2 99.7 4.2E-16 9.2E-21 119.9 11.6 96 167-262 1-100 (124)
60 cd04049 C2_putative_Elicitor-r 99.7 3.8E-16 8.3E-21 120.4 11.3 100 168-267 1-106 (124)
61 cd04018 C2C_Ferlin C2 domain t 99.7 2.9E-16 6.4E-21 124.6 10.5 90 170-259 2-108 (151)
62 cd04019 C2C_MCTP_PRT_plant C2 99.7 4.4E-16 9.6E-21 123.8 11.4 90 169-258 1-93 (150)
63 cd04010 C2B_RasA3 C2 domain se 99.7 3.8E-16 8.2E-21 123.7 10.9 97 170-267 2-120 (148)
64 cd04046 C2_Calpain C2 domain p 99.7 9.6E-16 2.1E-20 118.5 12.6 89 168-257 3-92 (126)
65 cd08384 C2B_Rabphilin_Doc2 C2 99.7 1.8E-16 3.9E-21 123.7 8.1 95 160-254 5-108 (133)
66 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 8.4E-16 1.8E-20 118.0 11.6 89 170-258 2-92 (121)
67 cd08390 C2A_Synaptotagmin-15-1 99.7 4.4E-16 9.5E-21 119.8 10.0 105 160-264 6-118 (123)
68 cd08692 C2B_Tac2-N C2 domain s 99.7 5.6E-16 1.2E-20 119.9 9.9 96 160-255 6-110 (135)
69 cd08402 C2B_Synaptotagmin-1 C2 99.7 5.8E-16 1.3E-20 121.3 9.7 98 158-255 5-111 (136)
70 cd08378 C2B_MCTP_PRT_plant C2 99.7 6.4E-16 1.4E-20 118.6 9.6 86 169-258 1-87 (121)
71 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 1.1E-15 2.5E-20 119.1 11.1 92 169-260 1-100 (133)
72 cd04015 C2_plant_PLD C2 domain 99.7 1.6E-15 3.4E-20 121.8 12.0 104 165-269 4-139 (158)
73 cd08400 C2_Ras_p21A1 C2 domain 99.7 2.2E-15 4.8E-20 116.5 12.4 101 166-269 2-104 (126)
74 cd08404 C2B_Synaptotagmin-4 C2 99.7 4.2E-16 9.1E-21 122.1 8.3 95 160-254 7-110 (136)
75 cd08675 C2B_RasGAP C2 domain s 99.6 1.1E-15 2.4E-20 119.8 10.7 102 170-271 1-122 (137)
76 cd08409 C2B_Synaptotagmin-15 C 99.6 3.7E-16 8.1E-21 122.6 7.7 110 159-268 6-123 (137)
77 cd08405 C2B_Synaptotagmin-7 C2 99.6 5.2E-16 1.1E-20 121.6 8.4 96 160-255 7-111 (136)
78 cd04037 C2E_Ferlin C2 domain f 99.6 2.1E-15 4.6E-20 116.3 11.6 89 169-257 1-93 (124)
79 cd08408 C2B_Synaptotagmin-14_1 99.6 9.6E-16 2.1E-20 120.3 9.7 98 159-256 6-113 (138)
80 cd08382 C2_Smurf-like C2 domai 99.6 1.8E-15 3.9E-20 116.5 10.8 89 170-259 2-94 (123)
81 cd08410 C2B_Synaptotagmin-17 C 99.6 1.5E-15 3.3E-20 118.8 10.1 95 159-253 5-108 (135)
82 cd04051 C2_SRC2_like C2 domain 99.6 1.6E-15 3.5E-20 117.0 9.1 93 169-261 1-101 (125)
83 cd04011 C2B_Ferlin C2 domain s 99.6 2.8E-15 6.2E-20 113.3 10.3 90 168-260 4-98 (111)
84 cd04014 C2_PKC_epsilon C2 doma 99.6 3.8E-15 8.3E-20 116.1 11.2 92 166-258 2-105 (132)
85 cd08403 C2B_Synaptotagmin-3-5- 99.6 2.4E-15 5.3E-20 117.5 10.0 94 160-253 6-108 (134)
86 cd04027 C2B_Munc13 C2 domain s 99.6 4.7E-15 1E-19 114.8 11.4 88 169-256 2-101 (127)
87 cd04040 C2D_Tricalbin-like C2 99.6 6.6E-15 1.4E-19 111.8 10.6 98 170-267 1-101 (115)
88 cd04035 C2A_Rabphilin_Doc2 C2 99.6 6.4E-15 1.4E-19 113.3 10.3 101 160-261 7-117 (123)
89 cd04048 C2A_Copine C2 domain f 99.6 8.2E-15 1.8E-19 112.3 10.0 95 173-267 5-112 (120)
90 cd04043 C2_Munc13_fungal C2 do 99.6 1.7E-14 3.6E-19 111.4 11.8 89 169-257 2-95 (126)
91 KOG0696 Serine/threonine prote 99.6 1.1E-15 2.4E-20 135.5 5.7 92 168-259 180-279 (683)
92 cd08690 C2_Freud-1 C2 domain f 99.6 1.9E-14 4.1E-19 114.4 12.0 99 170-268 4-120 (155)
93 cd00276 C2B_Synaptotagmin C2 d 99.6 3.8E-15 8.1E-20 116.1 7.6 106 161-268 7-121 (134)
94 cd08676 C2A_Munc13-like C2 dom 99.6 1.5E-14 3.3E-19 115.0 10.4 90 164-257 24-144 (153)
95 cd04017 C2D_Ferlin C2 domain f 99.6 2.7E-14 5.9E-19 111.7 11.6 87 169-255 2-100 (135)
96 cd08373 C2A_Ferlin C2 domain f 99.6 2.2E-14 4.8E-19 111.0 10.9 90 174-264 2-94 (127)
97 cd04026 C2_PKC_alpha_gamma C2 99.6 1.5E-14 3.3E-19 112.5 10.0 101 168-269 13-121 (131)
98 cd08686 C2_ABR C2 domain in th 99.5 6.2E-14 1.3E-18 105.7 9.9 79 170-253 1-91 (118)
99 cd04021 C2_E3_ubiquitin_ligase 99.5 8.4E-14 1.8E-18 107.5 10.8 90 169-259 3-93 (125)
100 KOG1028 Ca2+-dependent phospho 99.5 5.2E-14 1.1E-18 129.4 9.5 116 152-267 151-273 (421)
101 cd08691 C2_NEDL1-like C2 domai 99.5 2.3E-13 5E-18 106.4 11.0 91 169-261 2-110 (137)
102 cd04047 C2B_Copine C2 domain s 99.5 1.4E-13 2.9E-18 103.8 9.1 86 171-257 3-100 (110)
103 cd00275 C2_PLC_like C2 domain 99.5 8.1E-13 1.8E-17 102.1 11.0 91 169-260 3-104 (128)
104 cd04013 C2_SynGAP_like C2 doma 99.5 7.4E-13 1.6E-17 104.2 10.7 102 166-271 9-115 (146)
105 PLN03200 cellulose synthase-in 99.4 2.4E-13 5.1E-18 141.6 9.3 106 162-269 1974-2082(2102)
106 PF00168 C2: C2 domain; Inter 99.4 8.7E-13 1.9E-17 93.9 8.9 80 170-249 1-85 (85)
107 PLN03008 Phospholipase D delta 99.4 5.2E-13 1.1E-17 128.5 9.2 83 187-270 76-159 (868)
108 cd08383 C2A_RasGAP C2 domain ( 99.4 2.2E-12 4.8E-17 98.1 10.6 94 170-268 2-99 (117)
109 cd04052 C2B_Tricalbin-like C2 99.4 2.5E-12 5.3E-17 97.2 8.3 80 187-267 12-94 (111)
110 smart00239 C2 Protein kinase C 99.3 1.9E-11 4.2E-16 89.1 10.8 92 170-261 2-98 (101)
111 cd08374 C2F_Ferlin C2 domain s 99.3 2.6E-11 5.6E-16 93.9 11.2 92 170-261 2-127 (133)
112 KOG1028 Ca2+-dependent phospho 99.3 1.3E-11 2.9E-16 113.6 8.8 100 155-254 285-393 (421)
113 cd00030 C2 C2 domain. The C2 d 99.2 8.5E-11 1.8E-15 85.3 10.3 87 170-256 1-90 (102)
114 KOG1011 Neurotransmitter relea 99.2 4.2E-11 9.1E-16 111.0 6.6 95 162-256 289-395 (1283)
115 KOG0702 Predicted GTPase-activ 99.2 5.6E-11 1.2E-15 107.1 6.7 100 3-105 38-137 (524)
116 PLN02223 phosphoinositide phos 99.1 1.3E-09 2.7E-14 101.4 11.1 96 168-263 409-516 (537)
117 COG5038 Ca2+-dependent lipid-b 99.0 4.4E-10 9.5E-15 110.5 7.8 102 160-261 1032-1136(1227)
118 COG5038 Ca2+-dependent lipid-b 98.9 3.5E-09 7.6E-14 104.3 9.8 98 163-260 431-532 (1227)
119 KOG1031 Predicted Ca2+-depende 98.9 1.5E-09 3.2E-14 99.9 6.4 91 168-258 3-99 (1169)
120 PLN02952 phosphoinositide phos 98.9 9.3E-09 2E-13 97.5 11.0 96 167-262 469-577 (599)
121 PLN02230 phosphoinositide phos 98.9 1.1E-08 2.4E-13 96.8 10.3 96 168-263 469-577 (598)
122 PLN02222 phosphoinositide phos 98.8 2.1E-08 4.6E-13 94.7 11.2 96 168-263 452-560 (581)
123 cd08689 C2_fungal_Pkc1p C2 dom 98.8 1.7E-08 3.6E-13 74.0 7.3 84 170-258 1-89 (109)
124 KOG2059 Ras GTPase-activating 98.8 9.2E-09 2E-13 96.6 7.1 99 168-267 5-105 (800)
125 PLN02228 Phosphoinositide phos 98.8 5.1E-08 1.1E-12 92.0 11.2 97 168-264 431-541 (567)
126 PLN02270 phospholipase D alpha 98.8 3E-08 6.5E-13 96.0 9.7 105 165-270 5-130 (808)
127 KOG1328 Synaptic vesicle prote 98.8 2.4E-09 5.1E-14 100.7 1.5 93 165-257 944-1049(1103)
128 KOG0169 Phosphoinositide-speci 98.8 2.4E-08 5.2E-13 95.0 8.2 98 169-266 617-726 (746)
129 KOG1264 Phospholipase C [Lipid 98.7 5.3E-08 1.1E-12 92.8 8.7 93 168-260 1065-1165(1267)
130 KOG1326 Membrane-associated pr 98.3 4.3E-07 9.4E-12 88.4 4.7 94 165-258 610-707 (1105)
131 PLN02964 phosphatidylserine de 98.2 1.5E-06 3.4E-11 83.3 6.1 92 161-258 47-140 (644)
132 KOG0905 Phosphoinositide 3-kin 98.1 1.8E-06 4E-11 85.4 4.1 100 165-264 1521-1630(1639)
133 KOG1013 Synaptic vesicle prote 98.1 2.8E-06 6E-11 73.9 4.6 99 154-252 219-326 (362)
134 KOG2059 Ras GTPase-activating 98.1 3.3E-06 7.1E-11 79.8 4.4 95 171-265 134-249 (800)
135 PLN02352 phospholipase D epsil 97.9 4.8E-05 1E-09 74.0 8.6 96 166-269 8-112 (758)
136 KOG1328 Synaptic vesicle prote 97.8 2.6E-06 5.6E-11 80.8 -1.3 90 169-258 115-273 (1103)
137 KOG1013 Synaptic vesicle prote 97.8 4.4E-06 9.4E-11 72.7 -0.4 103 155-257 80-192 (362)
138 cd08684 C2A_Tac2-N C2 domain f 97.7 5.2E-05 1.1E-09 53.6 4.1 89 171-261 2-98 (103)
139 KOG2060 Rab3 effector RIM1 and 97.6 2.3E-05 5E-10 69.4 1.7 108 161-268 262-378 (405)
140 cd08683 C2_C2cd3 C2 domain fou 97.4 0.00056 1.2E-08 52.1 6.8 75 187-261 32-136 (143)
141 KOG1326 Membrane-associated pr 97.3 3.8E-05 8.2E-10 75.3 -0.7 87 169-255 207-304 (1105)
142 KOG1327 Copine [Signal transdu 97.2 0.00068 1.5E-08 63.3 6.4 87 170-257 138-236 (529)
143 KOG1011 Neurotransmitter relea 97.1 0.0015 3.2E-08 61.9 7.4 92 169-260 1126-1228(1283)
144 KOG3837 Uncharacterized conser 96.8 0.00067 1.4E-08 61.0 2.1 103 168-270 367-488 (523)
145 PF12416 DUF3668: Cep120 prote 96.1 0.064 1.4E-06 48.2 10.4 84 170-255 2-94 (340)
146 KOG1265 Phospholipase C [Lipid 96.0 0.014 3.1E-07 57.2 6.2 90 166-262 701-801 (1189)
147 cd08693 C2_PI3K_class_I_beta_d 95.5 0.13 2.8E-06 41.8 9.1 87 168-255 8-120 (173)
148 cd08398 C2_PI3K_class_I_alpha 95.5 0.15 3.2E-06 40.8 9.1 86 167-255 7-106 (158)
149 cd08380 C2_PI3K_like C2 domain 95.4 0.13 2.9E-06 40.8 8.8 87 169-255 9-107 (156)
150 PF15627 CEP76-C2: CEP76 C2 do 94.9 0.15 3.2E-06 40.5 7.3 94 167-260 8-120 (156)
151 cd08397 C2_PI3K_class_III C2 d 94.8 0.15 3.3E-06 40.8 7.3 69 187-255 29-107 (159)
152 cd04012 C2A_PI3K_class_II C2 d 94.0 0.3 6.4E-06 39.6 7.5 89 167-255 7-119 (171)
153 KOG1452 Predicted Rho GTPase-a 93.7 0.15 3.3E-06 44.7 5.5 82 161-243 44-129 (442)
154 PF00792 PI3K_C2: Phosphoinosi 92.7 0.77 1.7E-05 35.8 7.9 54 202-255 23-85 (142)
155 cd08399 C2_PI3K_class_I_gamma 92.3 1.2 2.6E-05 36.3 8.6 86 168-254 10-121 (178)
156 KOG1327 Copine [Signal transdu 92.0 0.34 7.3E-06 45.8 5.7 61 200-260 42-107 (529)
157 cd08695 C2_Dock-B C2 domains f 91.2 2.8 6E-05 34.5 9.6 53 200-252 54-111 (189)
158 PF14429 DOCK-C2: C2 domain in 90.4 5.8 0.00013 32.3 11.1 54 201-254 61-120 (184)
159 PF10358 NT-C2: N-terminal C2 89.4 4.8 0.0001 31.1 9.4 87 169-258 8-107 (143)
160 KOG0521 Putative GTPase activa 88.6 0.09 1.9E-06 52.4 -1.2 56 2-60 642-697 (785)
161 cd08687 C2_PKN-like C2 domain 88.4 2 4.4E-05 30.9 5.8 63 188-255 9-72 (98)
162 cd08694 C2_Dock-A C2 domains f 87.9 7.4 0.00016 32.2 9.7 55 199-253 53-114 (196)
163 PF15625 CC2D2AN-C2: CC2D2A N- 85.6 5.2 0.00011 32.2 7.7 70 187-257 36-108 (168)
164 smart00142 PI3K_C2 Phosphoinos 84.3 7.6 0.00017 28.3 7.5 68 170-237 13-91 (100)
165 KOG2419 Phosphatidylserine dec 71.7 0.27 5.8E-06 47.1 -4.4 78 161-239 273-357 (975)
166 cd08679 C2_DOCK180_related C2 69.1 12 0.00027 30.3 5.3 51 204-254 57-115 (178)
167 cd08696 C2_Dock-C C2 domains f 67.9 17 0.00036 29.7 5.8 54 200-253 55-117 (179)
168 cd08697 C2_Dock-D C2 domains f 64.7 25 0.00053 28.9 6.2 55 200-254 57-123 (185)
169 PF07162 B9-C2: Ciliary basal 62.5 79 0.0017 25.3 10.4 77 171-252 5-101 (168)
170 PF13119 DUF3973: Domain of un 61.3 4.1 8.9E-05 24.1 0.7 14 12-25 2-15 (41)
171 PF11618 DUF3250: Protein of u 56.4 18 0.00038 26.9 3.6 66 191-258 2-76 (107)
172 KOG0694 Serine/threonine prote 46.7 5.7 0.00012 38.8 -0.4 67 187-254 27-94 (694)
173 KOG3408 U1-like Zn-finger-cont 37.0 14 0.0003 27.9 0.4 42 9-50 55-105 (129)
174 PF00643 zf-B_box: B-box zinc 35.5 25 0.00054 20.7 1.4 20 4-23 16-36 (42)
175 KOG4027 Uncharacterized conser 34.6 2.4E+02 0.0052 22.6 7.3 41 213-253 65-109 (187)
176 PF10764 Gin: Inhibitor of sig 34.6 15 0.00033 22.7 0.3 12 9-20 16-27 (46)
177 PF14909 SPATA6: Spermatogenes 33.6 2.3E+02 0.005 22.1 9.3 69 187-256 19-100 (140)
178 PF01060 DUF290: Transthyretin 32.3 72 0.0016 22.0 3.5 27 226-252 11-37 (80)
179 KOG1329 Phospholipase D1 [Lipi 29.5 42 0.00091 34.0 2.5 77 188-264 138-216 (887)
180 COG5112 UFD2 U1-like Zn-finger 23.9 41 0.0009 24.7 1.0 40 9-48 53-101 (126)
181 KOG2322 N-methyl-D-aspartate r 23.3 35 0.00076 29.0 0.6 39 51-90 16-54 (237)
No 1
>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-38 Score=267.04 Aligned_cols=92 Identities=52% Similarity=0.903 Sum_probs=89.0
Q ss_pred CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCCCCCCCCCCCCHHHHH
Q 023876 2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERS 81 (276)
Q Consensus 2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 81 (276)
|+|||.|+|||||++||||||+||+||||||||+||.|++|+|+.|+.+ ||.+||.+||+.+|..+.+|.+++ .+|
T Consensus 36 P~WaSwnlGvFiC~~C~giHR~lg~hiSkVkSv~LD~W~~eqv~~m~~~-GN~~an~~~ea~~p~~~~~p~~d~---~~e 111 (287)
T KOG0703|consen 36 PRWASWNLGVFICLRCAGIHRSLGVHISKVKSVTLDEWTDEQVDFMISM-GNAKANSYYEAKLPDPFRRPGPDD---LVE 111 (287)
T ss_pred CCeEEeecCeEEEeecccccccccchhheeeeeeccccCHHHHHHHHHH-cchhhhhhccccCCccccCCChHH---HHH
Confidence 8999999999999999999999999999999999999999999999999 599999999999999999999876 899
Q ss_pred HHHHHHHhcCccccCC
Q 023876 82 DFIRRKYEKLEFFNFD 97 (276)
Q Consensus 82 ~fI~~KY~~~~f~~~~ 97 (276)
.|||+|||.++|+.++
T Consensus 112 ~FIR~KYE~kkf~~~~ 127 (287)
T KOG0703|consen 112 QFIRDKYERKKFLDPE 127 (287)
T ss_pred HHHHHHHhhhhhccch
Confidence 9999999999999876
No 2
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF. Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs.
Probab=100.00 E-value=1.1e-34 Score=218.97 Aligned_cols=95 Identities=43% Similarity=0.671 Sum_probs=87.8
Q ss_pred CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCCCCCCCCCCCCHHHHH
Q 023876 2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERS 81 (276)
Q Consensus 2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 81 (276)
|+|||+|||||||++|||+||+||+|||+||||+||+|++++|++|+. |||.++|++||++++....+|.+.+....++
T Consensus 14 p~w~s~~~GifvC~~CsgiHR~lg~his~VkSl~md~w~~~~i~~~~~-~GN~~~n~~~e~~~~~~~~~~~~~~~~~~~~ 92 (112)
T smart00105 14 PTWASVNLGVFLCIECSGIHRSLGVHISKVRSLTLDTWTEEELRLLQK-GGNENANSIWESNLDDFSLKPPDSDDQQKYE 92 (112)
T ss_pred CCcEEeccceeEhHHhHHHHHhcCCCcCeeeecccCCCCHHHHHHHHH-hhhHHHHHHHHhhCCccccCCCCCchHHHHH
Confidence 899999999999999999999999999999999999999999999965 7999999999999998755666666788999
Q ss_pred HHHHHHHhcCccccCC
Q 023876 82 DFIRRKYEKLEFFNFD 97 (276)
Q Consensus 82 ~fI~~KY~~~~f~~~~ 97 (276)
+||++||++++|+..+
T Consensus 93 ~fI~~KY~~k~f~~~~ 108 (112)
T smart00105 93 SFIAAKYEEKLFVPPE 108 (112)
T ss_pred HHHHHHHHhhhccccc
Confidence 9999999999999743
No 3
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins []. The GTP-bound form of ARF is essential for the maintenance of normal Golgi morphology, it participates in recruitment of coat proteins which are required for budding and fission of membranes. Before the fusion with an acceptor compartment the membrane must be uncoated. This step required the hydrolysis of GTP associated to ARF. These proteins contain a characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) which displays some similarity to the C4-type GATA zinc finger. The ARFGAP domain display no obvious similarity to other GAP proteins. The 3D structure of the ARFGAP domain of the PYK2-associated protein beta has been solved []. It consists of a three-stranded beta-sheet surrounded by 5 alpha helices. The domain is organised around a central zinc atom which is coordinated by 4 cysteines. The ARFGAP domain is clearly unrelated to the other GAP proteins structures which are exclusively helical. Classical GAP proteins accelerate GTPase activity by supplying an arginine finger to the active site. The crystal structure of ARFGAP bound to ARF revealed that the ARFGAP domain does not supply an arginine to the active site which suggests a more indirect role of the ARFGAP domain in the GTPase hydrolysis []. The Rev protein of human immunodeficiency virus type 1 (HIV-1) facilitates nuclear export of unspliced and partly-spliced viral RNAs []. Rev contains an RNA-binding domain and an effector domain; the latter is believed to interact with a cellular cofactor required for the Rev response and hence HIV-1 replication. Human Rev interacting protein (hRIP) specifically interacts with the Rev effector. The amino acid sequence of hRIP is characterised by an N-terminal, C-4 class zinc finger motif.; GO: 0008060 ARF GTPase activator activity, 0008270 zinc ion binding, 0032312 regulation of ARF GTPase activity; PDB: 2P57_A 2CRR_A 2OWA_B 3O47_B 3DWD_A 1DCQ_A 2CRW_A 3MDB_D 3FEH_A 3LJU_X ....
Probab=100.00 E-value=5.2e-34 Score=216.78 Aligned_cols=93 Identities=45% Similarity=0.809 Sum_probs=78.1
Q ss_pred CCCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCCCCCCCCCCCCHHHH
Q 023876 1 MGDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDER 80 (276)
Q Consensus 1 ~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~~~~~p~~~~~~~~~ 80 (276)
.|+|||+|||||||++|||+||+||+|+|+||||+||+|+++||+.|+. |||..+|++||++. +...+|.++++.+.+
T Consensus 23 ~p~w~s~~~GiflC~~Cag~HR~lg~~is~VkSi~~d~w~~~ev~~~~~-~GN~~~n~~~e~~~-~~~~~~~~~~~~~~~ 100 (116)
T PF01412_consen 23 NPTWASLNYGIFLCLECAGIHRSLGVHISRVKSITMDNWSPEEVQRMRE-GGNKRANSIWEANS-PPPKKPPPSSDQEKR 100 (116)
T ss_dssp S--EEETTTTEEE-HHHHHHHHHHTTTT--EEETTTS---HHHHHHHHH-SHHHHHHHHHTTTS-TTTTTHCTTSHHHHH
T ss_pred CCCEEEeecChhhhHHHHHHHHHhcccchhccccccCCCCHHHHHHHHH-HChHHHHHHHHcCC-CCCCCCCCCCcHHHH
Confidence 3899999999999999999999999999999999999999999999976 59999999999994 344688888999999
Q ss_pred HHHHHHHHhcCcccc
Q 023876 81 SDFIRRKYEKLEFFN 95 (276)
Q Consensus 81 ~~fI~~KY~~~~f~~ 95 (276)
++||++||++++|+.
T Consensus 101 ~~fI~~KY~~k~f~~ 115 (116)
T PF01412_consen 101 EQFIRAKYVEKAFIS 115 (116)
T ss_dssp HHHHHHHHTTHTTS-
T ss_pred HHHHHHHHHhhhhcc
Confidence 999999999999985
No 4
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]
Probab=99.96 E-value=1.9e-30 Score=226.22 Aligned_cols=95 Identities=40% Similarity=0.664 Sum_probs=86.6
Q ss_pred CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCCCC-CCCCCCCCHHHH
Q 023876 2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNL-KKPSPNSFIDER 80 (276)
Q Consensus 2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~~~-~~p~~~~~~~~~ 80 (276)
|+|||+|||||||++||||||+||+|||+||||+||.|+++||++|.. |||..||.||+.+.-... .+.....+...+
T Consensus 31 P~W~S~nlGvfiCi~CagvHRsLGvhiS~VKSitLD~wt~~~l~~m~~-gGN~~a~~~~e~~~~~~~~~~~k~~yd~~v~ 109 (319)
T COG5347 31 PTWASVNLGVFLCIDCAGVHRSLGVHISKVKSLTLDNWTEEELRRMEV-GGNSNANRFYEKNLLDQLLLPIKAKYDSSVA 109 (319)
T ss_pred CceEecccCeEEEeecchhhhccccceeeeeeeecccCCHHHHHHHHH-hcchhhhhHhccCCCcccccccccccCHHHH
Confidence 999999999999999999999999999999999999999999999976 899999999999986532 355567778899
Q ss_pred HHHHHHHHhcCccccCC
Q 023876 81 SDFIRRKYEKLEFFNFD 97 (276)
Q Consensus 81 ~~fI~~KY~~~~f~~~~ 97 (276)
++||+.||+.++|+..+
T Consensus 110 ~~y~~~ky~~~~~~~~~ 126 (319)
T COG5347 110 KKYIRKKYELKKFIDDS 126 (319)
T ss_pred HHHHHHHHHhhhccccc
Confidence 99999999999999853
No 5
>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional
Probab=99.95 E-value=3.7e-28 Score=219.81 Aligned_cols=93 Identities=25% Similarity=0.458 Sum_probs=83.7
Q ss_pred CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCCCCCCCCCCCCHHHHH
Q 023876 2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERS 81 (276)
Q Consensus 2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 81 (276)
|+|||+|||||||++|+||||.|| +|||||+||+|+++||++|+. |||.+||++||++|+....++...++.+.++
T Consensus 34 P~WASiNlGIFICi~CSGIHRsLG---hRVKSLSLDkWT~EEVe~Mk~-gGN~~AN~iyeanw~~~~~~~P~~sD~e~lr 109 (648)
T PLN03119 34 PQYVCTTFWTFVCMACSGIHREFT---HRVKSVSMSKFTSKEVEVLQN-GGNQRAREIYLKNWDHQRQRLPENSNAERVR 109 (648)
T ss_pred CCceeeccceEEeccchhhhccCC---ceeeccccCCCCHHHHHHHHH-hchHHHHHHHHhhcccccCCCCCCccHHHHH
Confidence 899999999999999999999998 699999999999999999976 6999999999999987654555566677888
Q ss_pred HHHHHHHhcCccccCCc
Q 023876 82 DFIRRKYEKLEFFNFDE 98 (276)
Q Consensus 82 ~fI~~KY~~~~f~~~~~ 98 (276)
+|||+||++|+|+....
T Consensus 110 ~FIR~KYVeKRF~~~~~ 126 (648)
T PLN03119 110 EFIKNVYVQKKYAGAND 126 (648)
T ss_pred HHHHHHHhhhhccCcCC
Confidence 99999999999998543
No 6
>PLN03131 hypothetical protein; Provisional
Probab=99.95 E-value=2.8e-28 Score=222.37 Aligned_cols=92 Identities=28% Similarity=0.463 Sum_probs=82.8
Q ss_pred CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCCCCCCCCCCCCHHHHH
Q 023876 2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERS 81 (276)
Q Consensus 2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 81 (276)
|+|||+|||||||++|+||||.|| +|||||+||+|+++||+.|+. |||.+||++||++|+....++.++++.+.++
T Consensus 34 P~WASiNlGIFICi~CSGIHRsLg---hRVKSVTLD~WtdeEV~~Mk~-gGN~~AN~iyeanwd~~r~~lP~~sd~ekrr 109 (705)
T PLN03131 34 PQFVCTNFWTFICMTCSGIHREFT---HRVKSVSMSKFTSQDVEALQN-GGNQRAREIYLKDWDQQRQRLPDNSKVDKIR 109 (705)
T ss_pred CCeeEeccceEEchhchhhhcccC---cccccccCCCCCHHHHHHHHH-hccHHHHHHHHhhcccccCCCCCCccHHHHH
Confidence 899999999999999999999998 699999999999999999975 7999999999999987644444566777889
Q ss_pred HHHHHHHhcCccccCC
Q 023876 82 DFIRRKYEKLEFFNFD 97 (276)
Q Consensus 82 ~fI~~KY~~~~f~~~~ 97 (276)
+|||+||++|+|+...
T Consensus 110 ~FIR~KYVeKRFa~~~ 125 (705)
T PLN03131 110 EFIKDIYVDKKYAGGK 125 (705)
T ss_pred HHHHHHHhhhhhhcCC
Confidence 9999999999999854
No 7
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.94 E-value=1.8e-27 Score=214.89 Aligned_cols=92 Identities=42% Similarity=0.788 Sum_probs=88.1
Q ss_pred CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCCCCCCCCCCCCHHHHH
Q 023876 2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERS 81 (276)
Q Consensus 2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 81 (276)
|.|||+|+|+++|++|+||||.||+|+|+|+|+.||.|..|-+..|..+ ||..||.+||...... .||.|++..++||
T Consensus 524 ~~wAslnlg~l~cieCsgihr~lgt~lSrvr~LeLDdWPvEl~~Vm~ai-GN~~AN~vWE~~~~G~-~KPs~~s~REEkE 601 (749)
T KOG0705|consen 524 PKWASLNLGVLMCIECSGIHRNLGTHLSRVRSLELDDWPVELLKVMSAI-GNDLANSVWEGSSQGQ-TKPSPDSSREEKE 601 (749)
T ss_pred cccccccCCeEEEEEchhhhhhhhhhhhhhhccccccCcHHHHHHHHHh-hhhHHHHHhhhhccCC-cCCCccccHHHHH
Confidence 8999999999999999999999999999999999999999999999988 8999999999966544 8999999999999
Q ss_pred HHHHHHHhcCcccc
Q 023876 82 DFIRRKYEKLEFFN 95 (276)
Q Consensus 82 ~fI~~KY~~~~f~~ 95 (276)
+||++||+++.|..
T Consensus 602 rwIr~KYeqklFLa 615 (749)
T KOG0705|consen 602 RWIRAKYEQKLFLA 615 (749)
T ss_pred HHHHHHHHHHhhcC
Confidence 99999999999997
No 8
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.90 E-value=1.6e-24 Score=185.60 Aligned_cols=92 Identities=33% Similarity=0.454 Sum_probs=72.0
Q ss_pred CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCCCC-----CCCCCCCC
Q 023876 2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNL-----KKPSPNSF 76 (276)
Q Consensus 2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~~~-----~~p~~~~~ 76 (276)
|+|||++||||||.+|||+||+||+|||.||||+||+|.+.||+.|. .|||.+++.|++.+..-.- .|.+.. .
T Consensus 30 PQWvSvsyGIfICLECSG~HRgLGVhiSFVRSVTMD~wkeiel~kMe-aGGN~~~~eFL~s~~~~~e~~~i~eKYns~-a 107 (386)
T KOG0704|consen 30 PQWVSVSYGIFICLECSGKHRGLGVHISFVRSVTMDKWKEIELKKME-AGGNERFREFLSSQGIYKETWPIREKYNSR-A 107 (386)
T ss_pred CCeEeecccEEEEEecCCcccccceeeEEEEeeecccccHHHHHHHH-hccchhHHHHHhhCccccccccHHHhhccH-H
Confidence 99999999999999999999999999999999999999999999995 5999999999987653110 111111 1
Q ss_pred HHHHHHHHHHHHhcCcccc
Q 023876 77 IDERSDFIRRKYEKLEFFN 95 (276)
Q Consensus 77 ~~~~~~fI~~KY~~~~f~~ 95 (276)
...-++=|.+--+.+.|-+
T Consensus 108 Aa~yRdki~~laegr~w~d 126 (386)
T KOG0704|consen 108 AALYRDKIAALAEGREWND 126 (386)
T ss_pred HHHHHHHHHHHhcCCcccc
Confidence 1222355777777777833
No 9
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional
Probab=99.90 E-value=8.1e-24 Score=182.63 Aligned_cols=96 Identities=31% Similarity=0.436 Sum_probs=81.8
Q ss_pred CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCCCC--CCCCCCCCHHH
Q 023876 2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNL--KKPSPNSFIDE 79 (276)
Q Consensus 2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~~~--~~p~~~~~~~~ 79 (276)
|+|||+|||||||++|+|+||.||+||++|||++||.|++++|++|. .|||.+||.||+.+.-... .+-.-++....
T Consensus 33 PtWASvn~GIFLCl~CSGVHRsLGvHISfVRSltLD~Ws~eqL~~Mk-~GGN~rA~~fF~qhG~~~~~~~~~KY~S~aA~ 111 (395)
T PLN03114 33 PTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSSEQLKMMI-YGGNNRAQVFFKQYGWSDGGKTEAKYTSRAAD 111 (395)
T ss_pred CCceeeccceeehhhhhHhhccCCCCCceeecccCCCCCHHHHHHHH-HhcCHHHHHHHHHcCCCCCCCcccccCCHHHH
Confidence 89999999999999999999999999999999999999999999995 5899999999998753321 12233466677
Q ss_pred HHHHHHHHHhcCccccCCc
Q 023876 80 RSDFIRRKYEKLEFFNFDE 98 (276)
Q Consensus 80 ~~~fI~~KY~~~~f~~~~~ 98 (276)
+++-+.+|++.+.+.....
T Consensus 112 ~Yre~L~keVa~~~a~~~~ 130 (395)
T PLN03114 112 LYKQILAKEVAKSKAEEEL 130 (395)
T ss_pred HHHHHHHHHHHHhhhcccc
Confidence 8888999999999986443
No 10
>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=99.89 E-value=6.5e-24 Score=187.67 Aligned_cols=63 Identities=40% Similarity=0.722 Sum_probs=60.8
Q ss_pred CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCC
Q 023876 2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP 65 (276)
Q Consensus 2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~ 65 (276)
|+|+|++||||||++||++||+|||||++|||..||.|+.+||+.| .+|||.+|+.|++.|.-
T Consensus 34 PtWaSVTYGIFLCiDCSAvHRnLGVHiSFVRSTnLDsWs~~qLR~M-~~GGN~nA~~FFkqhg~ 96 (454)
T KOG0706|consen 34 PTWASVTYGIFLCIDCSAVHRNLGVHISFVRSTNLDSWSWEQLRRM-QVGGNANARVFFKQHGC 96 (454)
T ss_pred CCceeecceEEEEEecchhhhccccceEEEeecccccCCHHHHhHh-hhcCchhHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999 58999999999999864
No 11
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.87 E-value=3.1e-22 Score=157.10 Aligned_cols=99 Identities=54% Similarity=0.916 Sum_probs=94.3
Q ss_pred cceeeEEEEEEEeeecCCCCCC-CCCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCC
Q 023876 164 VEFVGLIKVNVVKGTNLAVRDV-MTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTD 242 (276)
Q Consensus 164 ~~~~g~L~V~v~~a~~L~~~~~-~~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d 242 (276)
.++.|.|.|+|.+|.+|..+|+ +++||||++.+|+++.+|+++.+++||+|||.|.|.+.+...+|+++|||+|.++.|
T Consensus 2 ~~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~d 81 (168)
T KOG1030|consen 2 EMLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSD 81 (168)
T ss_pred CccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcc
Confidence 5678999999999999999999 599999999999999999999999999999999999999899999999999999999
Q ss_pred ceeEEEEEeCcccccccccc
Q 023876 243 DFMGDAEIDIQPLVTAARAC 262 (276)
Q Consensus 243 ~~lG~~~l~l~~l~~~~~~~ 262 (276)
|+||.++|+|.+++.+....
T Consensus 82 D~mG~A~I~l~p~~~~~~~~ 101 (168)
T KOG1030|consen 82 DFMGEATIPLKPLLEAQKMD 101 (168)
T ss_pred cccceeeeccHHHHHHhhhh
Confidence 99999999999999877665
No 12
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=99.85 E-value=1.6e-22 Score=195.86 Aligned_cols=97 Identities=42% Similarity=0.668 Sum_probs=90.7
Q ss_pred CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCCC-CCCCCCCCCHHHH
Q 023876 2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGN-LKKPSPNSFIDER 80 (276)
Q Consensus 2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~~-~~~p~~~~~~~~~ 80 (276)
|+|+|+|+||.+||+|+|+||+||+|||+|+|++||.|.++.+..|+++ ||..+|.+||+.+++. ..+|.+..+...|
T Consensus 437 ptw~S~NLgv~~CIecSGvhRslGvh~SkvrsLtLD~~~~~l~~l~~~l-gn~~~N~i~e~~l~~~~~~~~~~~~~~~~r 515 (785)
T KOG0521|consen 437 PTWASINLGVLLCIECSGVHRSLGVHISKVRSLTLDVWEPELLLLFKNL-GNKYVNEIYEALLPSYDSSKPTASSSRQAR 515 (785)
T ss_pred CchHhhhhchhhHhhccccccccCchhhhhhhhhhhccCcHHHHHHHHh-CcchhhhhhhcccccccccCCCCccchhhh
Confidence 8999999999999999999999999999999999999999999999876 9999999999999864 5799998889999
Q ss_pred HHHHHHHHhcCccccCCcc
Q 023876 81 SDFIRRKYEKLEFFNFDEQ 99 (276)
Q Consensus 81 ~~fI~~KY~~~~f~~~~~~ 99 (276)
+.||++||++++|....++
T Consensus 516 ~~~i~~kyve~~F~~k~~~ 534 (785)
T KOG0521|consen 516 EAWIKAKYVERRFSVKEPQ 534 (785)
T ss_pred hHhhhcccceeeEeecccc
Confidence 9999999999999986554
No 13
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=99.83 E-value=1e-21 Score=175.23 Aligned_cols=93 Identities=29% Similarity=0.588 Sum_probs=85.3
Q ss_pred CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCC------CCCCCCCCC
Q 023876 2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPG------NLKKPSPNS 75 (276)
Q Consensus 2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~------~~~~p~~~~ 75 (276)
|.|||+|-|+|||.+|+.+||+||.|||.||++.-..|.++.|++...+ .|..||.|||+.+-+ +..||+|.+
T Consensus 19 p~WASvnrGt~lC~eCcsvHrsLGrhIS~vrhLR~s~W~pt~l~~V~tL-n~~gaNsIWEh~Lld~st~~sg~rk~~pqD 97 (669)
T KOG0818|consen 19 PSWASVNRGTFLCDECCSVHRSLGRHISQVRHLRHTPWPPTLLQMVETL-NNNGANSIWEHSLLDPATIMSGRRKANPQD 97 (669)
T ss_pred CcceeecCceEehHhhhHHHhhhcchHHHHHHhccCCCCHHHHHHHHHH-HhcCcchhhhhhccCchhhhcccCCCCCcC
Confidence 8999999999999999999999999999999999999999999988776 788899999999843 457899977
Q ss_pred CHH-HHHHHHHHHHhcCcccc
Q 023876 76 FID-ERSDFIRRKYEKLEFFN 95 (276)
Q Consensus 76 ~~~-~~~~fI~~KY~~~~f~~ 95 (276)
... .|++|||+||+...|..
T Consensus 98 ~~Hp~K~eFIkaKy~~LtFv~ 118 (669)
T KOG0818|consen 98 KVHPNKAEFIRAKYQMLAFVH 118 (669)
T ss_pred CCCccHHHHHHHHHHheeeec
Confidence 665 99999999999999996
No 14
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.83 E-value=4.6e-20 Score=139.40 Aligned_cols=105 Identities=17% Similarity=0.285 Sum_probs=88.2
Q ss_pred hhhhcccceeeEEEEEEEeeecCCCCCCCCCCcEEEEEECC----eeeccccccCCCCCeEeeEEEEEeeC---CCCcEE
Q 023876 158 NSLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGH----QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLK 230 (276)
Q Consensus 158 ~~~~~~~~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~----~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~ 230 (276)
..+..|....+.|+|+|++|++|+ .+ +.+||||++++.. .+.+|++.++|+||+|||+|.|.++. ....|.
T Consensus 4 ~fsL~Y~~~~~~L~V~vikA~~L~-~~-g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~ 81 (118)
T cd08677 4 HYSLSYDKQKAELHVNILEAENIS-VD-AGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLT 81 (118)
T ss_pred EEEEEEcCcCCEEEEEEEEecCCC-CC-CCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEE
Confidence 345678888999999999999998 22 3689999999942 46799999999999999999999865 456799
Q ss_pred EEEEEcCCCCCCceeEEEEEeCccccccccccCC
Q 023876 231 VLVYDKDTFTTDDFMGDAEIDIQPLVTAARACET 264 (276)
Q Consensus 231 i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~ 264 (276)
|+|||+|+++++++||++.+++.++..+.....|
T Consensus 82 ~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W 115 (118)
T cd08677 82 LTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQW 115 (118)
T ss_pred EEEEeCCCCCCCceEEEEEEccccccCCccccch
Confidence 9999999999999999999999987544433333
No 15
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.80 E-value=6.3e-19 Score=134.90 Aligned_cols=102 Identities=21% Similarity=0.391 Sum_probs=88.8
Q ss_pred eEEEEEEEeeecCCCCCCCCCCcEEEEEECCeeeccccccC-CCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCceeE
Q 023876 168 GLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKS-NLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMG 246 (276)
Q Consensus 168 g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~T~~~~~-t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~lG 246 (276)
|.|.|+|++|++++..+.+.+||||++.+++++++|+++.+ +.||+|||+|.|.+......|.|+|||++.+++|++||
T Consensus 2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG 81 (121)
T cd04016 2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIA 81 (121)
T ss_pred cEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceEE
Confidence 68999999999988877559999999999999999999876 79999999999999765578999999999999999999
Q ss_pred EEEEeCc-cccccccccCCCccCC
Q 023876 247 DAEIDIQ-PLVTAARACETPISMS 269 (276)
Q Consensus 247 ~~~l~l~-~l~~~~~~~~~~~~~~ 269 (276)
.+.++|. .+..+.....|..+.+
T Consensus 82 ~~~i~l~~~~~~g~~~~~W~~L~~ 105 (121)
T cd04016 82 WTHITIPESVFNGETLDDWYSLSG 105 (121)
T ss_pred EEEEECchhccCCCCccccEeCcC
Confidence 9999996 5666665666665543
No 16
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.79 E-value=9.8e-19 Score=134.70 Aligned_cols=100 Identities=22% Similarity=0.394 Sum_probs=88.0
Q ss_pred EEEEEEEeeec---CCCCCCC-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCC----
Q 023876 169 LIKVNVVKGTN---LAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFT---- 240 (276)
Q Consensus 169 ~L~V~v~~a~~---L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~---- 240 (276)
+|.|+|++|++ |+.++.. .+||||++.++.++.+|+++++++||+|||+|.|.+......|.|+|||++.++
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~ 80 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA 80 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence 48999999999 7887876 999999999999999999999999999999999999776678999999998874
Q ss_pred --CCceeEEEEEeCccccccccccCCCccC
Q 023876 241 --TDDFMGDAEIDIQPLVTAARACETPISM 268 (276)
Q Consensus 241 --~d~~lG~~~l~l~~l~~~~~~~~~~~~~ 268 (276)
.|++||++.++|+.+..+.....+..+.
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~ 110 (126)
T cd08379 81 VQPDVLIGKVRIRLSTLEDDRVYAHSYPLL 110 (126)
T ss_pred CCCCceEEEEEEEHHHccCCCEEeeEEEeE
Confidence 8999999999999998776655554443
No 17
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.78 E-value=1.7e-18 Score=130.22 Aligned_cols=94 Identities=29% Similarity=0.506 Sum_probs=83.6
Q ss_pred eEEEEEEEeeecCCCCCCC-----CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeC--CCCcEEEEEEEcCCCC
Q 023876 168 GLIKVNVVKGTNLAVRDVM-----TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVLVYDKDTFT 240 (276)
Q Consensus 168 g~L~V~v~~a~~L~~~~~~-----~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~--~~~~L~i~v~d~~~~~ 240 (276)
|+|.|+|++|++|+..+.. .+||||++.++.+.++|+++++++||+|||.|.|.+.. ....|.|+|||++.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 6899999999999987532 48999999999999999999999999999999999865 3347999999999999
Q ss_pred CCceeEEEEEeCccccccccc
Q 023876 241 TDDFMGDAEIDIQPLVTAARA 261 (276)
Q Consensus 241 ~d~~lG~~~l~l~~l~~~~~~ 261 (276)
.|++||++.++|++|..+...
T Consensus 81 ~dd~IG~~~l~L~~l~~~~~~ 101 (108)
T cd04039 81 FNDYVATGSLSVQELLNAAPQ 101 (108)
T ss_pred CCcceEEEEEEHHHHHhhCCC
Confidence 999999999999999876654
No 18
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.78 E-value=1.7e-18 Score=133.22 Aligned_cols=96 Identities=29% Similarity=0.423 Sum_probs=83.5
Q ss_pred eeEEEEEEEeeecCCCCCCCCCCcEEEEEEC-----CeeeccccccCCCCCeEeeEEEEEe-eC---CCCcEEEEEEEcC
Q 023876 167 VGLIKVNVVKGTNLAVRDVMTSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSI-PE---NIPPLKVLVYDKD 237 (276)
Q Consensus 167 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~-----~~~~~T~~~~~t~nP~w~e~~~f~~-~~---~~~~L~i~v~d~~ 237 (276)
.+.|.|+|++|++|+..+...+||||++++. ..+.+|++++++.||+|||+|.|.+ +. ....|.|+|||++
T Consensus 12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d 91 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD 91 (122)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence 6889999999999999993389999999995 3468999999999999999999987 32 4568999999999
Q ss_pred CCCCCceeEEEEEeCcccccccccc
Q 023876 238 TFTTDDFMGDAEIDIQPLVTAARAC 262 (276)
Q Consensus 238 ~~~~d~~lG~~~l~l~~l~~~~~~~ 262 (276)
.++++++||++.++|.++.......
T Consensus 92 ~~~~~~~lG~~~i~l~~l~~~~~~~ 116 (122)
T cd08381 92 SLVENEFLGGVCIPLKKLDLSQETE 116 (122)
T ss_pred CCcCCcEEEEEEEeccccccCCCcc
Confidence 9999999999999999988654433
No 19
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.78 E-value=2.1e-18 Score=136.17 Aligned_cols=96 Identities=67% Similarity=1.069 Sum_probs=88.6
Q ss_pred eeEEEEEEEeeecCCCCCCCCCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCceeE
Q 023876 167 VGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMG 246 (276)
Q Consensus 167 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~lG 246 (276)
.|.|.|+|++|++|+..+...+||||++.+++++.+|++++++.||+|||.|.|.+......|+|+|||++.++.|++||
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG 80 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG 80 (145)
T ss_pred CeEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence 37899999999999988877899999999999999999999999999999999999877788999999999999999999
Q ss_pred EEEEeCcccccccccc
Q 023876 247 DAEIDIQPLVTAARAC 262 (276)
Q Consensus 247 ~~~l~l~~l~~~~~~~ 262 (276)
++.+++.++..+....
T Consensus 81 ~a~i~l~~l~~~~~~~ 96 (145)
T cd04038 81 EAEIDLEPLVEAAKLD 96 (145)
T ss_pred EEEEEHHHhhhhhhhh
Confidence 9999999998766554
No 20
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.77 E-value=2.7e-18 Score=132.86 Aligned_cols=98 Identities=27% Similarity=0.468 Sum_probs=84.9
Q ss_pred EEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeC------CCCcEEEEEEEcCCCCCC
Q 023876 170 IKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE------NIPPLKVLVYDKDTFTTD 242 (276)
Q Consensus 170 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~------~~~~L~i~v~d~~~~~~d 242 (276)
|.|+|++|++|+..+.. .+||||++.++.++++|+++++++||+|||.|.|.+.. ....|.|+|||++.+++|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 57999999999988876 89999999999999999999999999999999999865 356799999999999999
Q ss_pred ceeEEEEEeCcccc--ccccccCCCcc
Q 023876 243 DFMGDAEIDIQPLV--TAARACETPIS 267 (276)
Q Consensus 243 ~~lG~~~l~l~~l~--~~~~~~~~~~~ 267 (276)
++||++.++|+++. .+.....|..+
T Consensus 81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L 107 (126)
T cd08682 81 KFLGQVSIPLNDLDEDKGRRRTRWFKL 107 (126)
T ss_pred ceeEEEEEEHHHhhccCCCcccEEEEC
Confidence 99999999999987 33333444444
No 21
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.75 E-value=1.1e-17 Score=127.69 Aligned_cols=90 Identities=20% Similarity=0.310 Sum_probs=79.7
Q ss_pred eeEEEEEEEeeecCCCCCCCCCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCceeE
Q 023876 167 VGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMG 246 (276)
Q Consensus 167 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~lG 246 (276)
++.|+|+|++|++|+..+ ..||||++.+++++.+|++.+. .||.|||.|.|.+......|.|+|||++.+ .|++||
T Consensus 1 m~~L~V~Vv~Ar~L~~~~--~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG 76 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD--KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVG 76 (127)
T ss_pred CceEEEEEEEeeCCCCCC--CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceE
Confidence 468999999999997655 4699999999999999999988 499999999999987666799999999865 899999
Q ss_pred EEEEeCcccccccc
Q 023876 247 DAEIDIQPLVTAAR 260 (276)
Q Consensus 247 ~~~l~l~~l~~~~~ 260 (276)
++.++|.++..+..
T Consensus 77 ~v~i~L~~v~~~~~ 90 (127)
T cd08394 77 TVWIPLSTIRQSNE 90 (127)
T ss_pred EEEEEhHHcccCCC
Confidence 99999999886544
No 22
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.75 E-value=5.8e-18 Score=130.78 Aligned_cols=106 Identities=27% Similarity=0.368 Sum_probs=89.1
Q ss_pred hhhcccceeeEEEEEEEeeecCCCCCCC--CCCcEEEEEEC-----CeeeccccccCCCCCeEeeEEEEEeeC---CCCc
Q 023876 159 SLVAMVEFVGLIKVNVVKGTNLAVRDVM--TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPP 228 (276)
Q Consensus 159 ~~~~~~~~~g~L~V~v~~a~~L~~~~~~--~~dpyv~v~l~-----~~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~ 228 (276)
....|....+.|.|+|++|++|+.++.. .+||||++++. ..+.+|+++++++||+|||.|.|.+.. ....
T Consensus 6 ~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~ 85 (125)
T cd08393 6 FALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRV 85 (125)
T ss_pred EEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCE
Confidence 3456667778999999999999998853 89999999993 245799999999999999999999864 3468
Q ss_pred EEEEEEEcCCCCCCceeEEEEEeCccccccccccCC
Q 023876 229 LKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACET 264 (276)
Q Consensus 229 L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~ 264 (276)
|.|+|||++.++++++||++.++|.++........|
T Consensus 86 L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W 121 (125)
T cd08393 86 LNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTW 121 (125)
T ss_pred EEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcce
Confidence 999999999999999999999999998655443334
No 23
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.75 E-value=7.3e-18 Score=130.19 Aligned_cols=107 Identities=28% Similarity=0.359 Sum_probs=90.5
Q ss_pred hhhcccceeeEEEEEEEeeecCCCCCC--CCCCcEEEEEEC-----CeeeccccccCCCCCeEeeEEEEEeeC---CCCc
Q 023876 159 SLVAMVEFVGLIKVNVVKGTNLAVRDV--MTSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPP 228 (276)
Q Consensus 159 ~~~~~~~~~g~L~V~v~~a~~L~~~~~--~~~dpyv~v~l~-----~~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~ 228 (276)
....|....+.|.|+|++|++|+..+. +.+||||++++. ..+.+|++++++.||+|||+|.|.+.. ....
T Consensus 6 ~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~ 85 (125)
T cd04029 6 FSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRT 85 (125)
T ss_pred EEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCE
Confidence 345677888999999999999998765 379999999983 235789999999999999999999864 3467
Q ss_pred EEEEEEEcCCCCCCceeEEEEEeCccccccccccCCC
Q 023876 229 LKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETP 265 (276)
Q Consensus 229 L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~ 265 (276)
|.|+|||++.++++++||++.++|..+........|.
T Consensus 86 L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~ 122 (125)
T cd04029 86 LQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECL 122 (125)
T ss_pred EEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEE
Confidence 9999999999999999999999999987665555444
No 24
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=99.75 E-value=5.3e-19 Score=166.27 Aligned_cols=96 Identities=35% Similarity=0.558 Sum_probs=91.7
Q ss_pred CCeEEeccceeEcccchHHHhccCCCcceEEEeccCC--CCHHHHHHHHHcccchhhhhhhhhcCCCCCCCCCCCCCHHH
Q 023876 2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDE--WTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDE 79 (276)
Q Consensus 2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~--w~~~~~~~~~~~ggN~~~~~~~~~~~~~~~~~p~~~~~~~~ 79 (276)
|.|||+|++|.||-.|+|-||+||..+|+|+|++||. |+.+-++++..+ ||.++|.||-++++++ ...+|+++...
T Consensus 309 PdwasiNL~vvIck~caGqhrslgs~dSkvrslkmd~svwsneliElfivl-gn~~an~Fwa~nl~~~-e~lh~dssp~~ 386 (1186)
T KOG1117|consen 309 PDWASINLCVVICKPCAGQHRSLGSGDSKVRSLKMDPSVWSNELIELFIVL-GNPRANRFWAGNLPPN-EHLHPDSSPST 386 (1186)
T ss_pred CcccccccceEEcccCCCccccCCCccccccccccCcccccchhhhhheee-cCcccccccccCCCCc-cccCCCCCcch
Confidence 8999999999999999999999999999999999996 999999999988 8999999999999988 78899999999
Q ss_pred HHHHHHHHHhcCccccCCcc
Q 023876 80 RSDFIRRKYEKLEFFNFDEQ 99 (276)
Q Consensus 80 ~~~fI~~KY~~~~f~~~~~~ 99 (276)
|.+||++||.+.+|....+.
T Consensus 387 r~~fi~~Kykeg~fRk~~~~ 406 (1186)
T KOG1117|consen 387 RRQFIKEKYKEGKFRKEHPV 406 (1186)
T ss_pred hhhHHHHHhhcccccccccc
Confidence 99999999999999987765
No 25
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.75 E-value=1.3e-17 Score=131.46 Aligned_cols=113 Identities=21% Similarity=0.320 Sum_probs=91.2
Q ss_pred hhhhhhhcccceeeEEEEEEEeeecCCCCC-CC-CCCcEEEEEE--CC---eeeccccccCCCCCeEeeEEEEEeeCCCC
Q 023876 155 KKANSLVAMVEFVGLIKVNVVKGTNLAVRD-VM-TSDPYVILAL--GH---QTVKTRVIKSNLNPVWNESLMLSIPENIP 227 (276)
Q Consensus 155 ~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~-~~-~~dpyv~v~l--~~---~~~~T~~~~~t~nP~w~e~~~f~~~~~~~ 227 (276)
+.+.....| ..+.|.|+|++|++|+..+ .. .+||||++++ ++ .+.+|+++++++||+|||+|.|.+.....
T Consensus 18 G~l~lsl~y--~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~ 95 (146)
T cd04028 18 GDIQLGLYD--KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGK 95 (146)
T ss_pred ceEEEEEEe--CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCC
Confidence 344433444 3689999999999998864 33 7899999999 32 36799999999999999999999986677
Q ss_pred cEEEEEE-EcCCCCCCceeEEEEEeCccccccccccCCCccCC
Q 023876 228 PLKVLVY-DKDTFTTDDFMGDAEIDIQPLVTAARACETPISMS 269 (276)
Q Consensus 228 ~L~i~v~-d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~~~ 269 (276)
.|.|+|| |++.++++++||++.|+|+.+..+.....|..++.
T Consensus 96 ~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~ 138 (146)
T cd04028 96 TLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFP 138 (146)
T ss_pred EEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCC
Confidence 8999999 68888899999999999999866655555555543
No 26
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.74 E-value=1.9e-17 Score=126.08 Aligned_cols=100 Identities=33% Similarity=0.508 Sum_probs=88.4
Q ss_pred EEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeCC-CCcEEEEEEEcCCCCCCceeE
Q 023876 169 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPEN-IPPLKVLVYDKDTFTTDDFMG 246 (276)
Q Consensus 169 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~~-~~~L~i~v~d~~~~~~d~~lG 246 (276)
+|+|+|++|++|+..+.. .+||||+++++++..+|++++++.||.|||.|.|.+... ...|.|+|||++.++++++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 378999999999998876 899999999999999999999999999999999998763 678999999999999999999
Q ss_pred EEEEeCccccccccccCCCccC
Q 023876 247 DAEIDIQPLVTAARACETPISM 268 (276)
Q Consensus 247 ~~~l~l~~l~~~~~~~~~~~~~ 268 (276)
++.++|+++..+.....|..+.
T Consensus 81 ~~~~~l~~l~~~~~~~~w~~L~ 102 (116)
T cd08376 81 RCEIDLSALPREQTHSLELELE 102 (116)
T ss_pred EEEEeHHHCCCCCceEEEEEcc
Confidence 9999999988766655554443
No 27
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.74 E-value=1.9e-17 Score=126.49 Aligned_cols=99 Identities=19% Similarity=0.257 Sum_probs=83.7
Q ss_pred EEEEEEEeeecCCCCCCCCCCcEEEEEE-C----C--eeeccccccCCCCCeEeeEEEEEeeCC----CCcEEEEEEEcC
Q 023876 169 LIKVNVVKGTNLAVRDVMTSDPYVILAL-G----H--QTVKTRVIKSNLNPVWNESLMLSIPEN----IPPLKVLVYDKD 237 (276)
Q Consensus 169 ~L~V~v~~a~~L~~~~~~~~dpyv~v~l-~----~--~~~~T~~~~~t~nP~w~e~~~f~~~~~----~~~L~i~v~d~~ 237 (276)
.|+|+|++|++|+..+.+.+||||+|++ | . ++.+|+++++++||+|||.|.|.+... ...|.|.|||++
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 3899999999999888668999999997 3 2 356899999999999999999999742 245899999999
Q ss_pred CCCCCceeEEEEEeCccccccccccCCCcc
Q 023876 238 TFTTDDFMGDAEIDIQPLVTAARACETPIS 267 (276)
Q Consensus 238 ~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~ 267 (276)
..+.+++||++.++|.++..+.....|..+
T Consensus 81 ~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L 110 (120)
T cd08395 81 FARDDRLVGVTVLQLRDIAQAGSCACWLPL 110 (120)
T ss_pred ccCCCCEEEEEEEEHHHCcCCCcEEEEEEC
Confidence 888899999999999999977765555444
No 28
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.74 E-value=1.6e-17 Score=128.05 Aligned_cols=110 Identities=25% Similarity=0.375 Sum_probs=92.1
Q ss_pred hhhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC---CeeeccccccCCCCCeEeeEEEEEeeC---CCCcE
Q 023876 157 ANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPL 229 (276)
Q Consensus 157 ~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~---~~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L 229 (276)
+.....|....+.|.|+|++|++|+..+.. .+||||++.+. ....+|++++++.||+|||.|.|.+.. ....|
T Consensus 5 l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l 84 (124)
T cd08385 5 LQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTL 84 (124)
T ss_pred EEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEE
Confidence 334456777788999999999999998876 89999999983 346799999999999999999999864 34689
Q ss_pred EEEEEEcCCCCCCceeEEEEEeCccccccccccCCCc
Q 023876 230 KVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPI 266 (276)
Q Consensus 230 ~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~ 266 (276)
.|+|||++.++.+++||++.++|+++..+.....|..
T Consensus 85 ~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~ 121 (124)
T cd08385 85 VFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRD 121 (124)
T ss_pred EEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEE
Confidence 9999999999999999999999999876555554543
No 29
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.74 E-value=1.6e-17 Score=128.07 Aligned_cols=110 Identities=26% Similarity=0.443 Sum_probs=93.1
Q ss_pred hhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC---CeeeccccccCCCCCeEeeEEEEEeeC---CCCcEE
Q 023876 158 NSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLK 230 (276)
Q Consensus 158 ~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~---~~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~ 230 (276)
.....|....+.|.|+|++|++|+..+.. .+||||++.+. ....+|++++++.||+|||.|.|.+.. ....|.
T Consensus 6 ~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~ 85 (124)
T cd08387 6 HFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLE 85 (124)
T ss_pred EEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEE
Confidence 33456677789999999999999998876 89999999983 356899999999999999999999865 246899
Q ss_pred EEEEEcCCCCCCceeEEEEEeCccccccccccCCCcc
Q 023876 231 VLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPIS 267 (276)
Q Consensus 231 i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~ 267 (276)
|+|||++.++++++||++.++|+++..+.....|..+
T Consensus 86 i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08387 86 VLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKI 122 (124)
T ss_pred EEEEECCCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence 9999999999999999999999999866655555443
No 30
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.74 E-value=3.4e-17 Score=128.20 Aligned_cols=94 Identities=33% Similarity=0.623 Sum_probs=86.1
Q ss_pred cceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCCCCC
Q 023876 164 VEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTT 241 (276)
Q Consensus 164 ~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~~~~ 241 (276)
...+|.|.|+|++|++|+..+.. .+||||++.++.+..+|++++++.||.|||.|.|.+.. ....|.|+|||++.++.
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~ 90 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSP 90 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCC
Confidence 34568999999999999998876 89999999999999999999999999999999999865 45679999999999999
Q ss_pred CceeEEEEEeCccccc
Q 023876 242 DDFMGDAEIDIQPLVT 257 (276)
Q Consensus 242 d~~lG~~~l~l~~l~~ 257 (276)
|++||++.++|.++..
T Consensus 91 d~~lG~~~i~l~~l~~ 106 (136)
T cd08375 91 DDFLGRTEIRVADILK 106 (136)
T ss_pred CCeeEEEEEEHHHhcc
Confidence 9999999999999886
No 31
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.73 E-value=2.5e-17 Score=126.72 Aligned_cols=100 Identities=20% Similarity=0.250 Sum_probs=87.4
Q ss_pred hhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE---C---CeeeccccccCCCCCeEeeEEEEEeeC---CCCcE
Q 023876 160 LVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL---G---HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPL 229 (276)
Q Consensus 160 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l---~---~~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L 229 (276)
+..|....+.|.|+|++|++|+.++.. .+||||++++ . ..+.+|++++++.||+|||+|.|.+.. ....|
T Consensus 6 sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L 85 (124)
T cd08680 6 GLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTL 85 (124)
T ss_pred EEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEE
Confidence 456778889999999999999998766 8999999998 2 247899999999999999999999865 45789
Q ss_pred EEEEEEcCCCCCCceeEEEEEeCccccccc
Q 023876 230 KVLVYDKDTFTTDDFMGDAEIDIQPLVTAA 259 (276)
Q Consensus 230 ~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~ 259 (276)
.|+||+.+.++++++||++.|+|.++....
T Consensus 86 ~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~ 115 (124)
T cd08680 86 QVDVCSVGPDQQEECLGGAQISLADFESSE 115 (124)
T ss_pred EEEEEeCCCCCceeEEEEEEEEhhhccCCC
Confidence 999999999999999999999999985443
No 32
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.73 E-value=3.8e-17 Score=124.81 Aligned_cols=99 Identities=33% Similarity=0.531 Sum_probs=85.0
Q ss_pred eEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccC-CCCCeEeeEEEEEeeC-CCCcEEEEEEEcCCCCCCce
Q 023876 168 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKS-NLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDF 244 (276)
Q Consensus 168 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~-t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~~~~d~~ 244 (276)
|.|.|+|++|++|+..+.. .+||||++.++....+|+++.+ ++||+|||.|.|.+.. ....|.|+|||++..+ |++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence 5799999999999998876 8999999999998999998754 7999999999999976 4568999999998876 899
Q ss_pred eEEEEEeCccccccccccCCCcc
Q 023876 245 MGDAEIDIQPLVTAARACETPIS 267 (276)
Q Consensus 245 lG~~~l~l~~l~~~~~~~~~~~~ 267 (276)
||++.+++.++..+.....+..+
T Consensus 80 iG~~~~~l~~~~~~~~~~~w~~L 102 (118)
T cd08681 80 IGDTEVDLSPALKEGEFDDWYEL 102 (118)
T ss_pred eEEEEEecHHHhhcCCCCCcEEe
Confidence 99999999998765544444443
No 33
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.72 E-value=4.9e-17 Score=124.84 Aligned_cols=99 Identities=38% Similarity=0.567 Sum_probs=87.6
Q ss_pred EEEEEEeeecCCCCCCC-CCCcEEEEEECC-eeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCceeEE
Q 023876 170 IKVNVVKGTNLAVRDVM-TSDPYVILALGH-QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGD 247 (276)
Q Consensus 170 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~lG~ 247 (276)
|.|+|++|++|+..+.. .+||||++.+++ ..++|++++++.||.|||.|.|.+......|.|+|||++..+++++||.
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG~ 81 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMGS 81 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceEE
Confidence 78999999999998876 899999999976 5789999999999999999999987656789999999999999999999
Q ss_pred EEEeCccccccccccCCCccC
Q 023876 248 AEIDIQPLVTAARACETPISM 268 (276)
Q Consensus 248 ~~l~l~~l~~~~~~~~~~~~~ 268 (276)
+.++|.++..+.....+..+.
T Consensus 82 ~~~~l~~l~~~~~~~~~~~L~ 102 (121)
T cd04042 82 AFVDLSTLELNKPTEVKLKLE 102 (121)
T ss_pred EEEEHHHcCCCCCeEEEEECC
Confidence 999999998776665554443
No 34
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.72 E-value=6.4e-17 Score=124.54 Aligned_cols=100 Identities=32% Similarity=0.466 Sum_probs=87.8
Q ss_pred EEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCCCCCCceeE
Q 023876 169 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFMG 246 (276)
Q Consensus 169 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~~~~d~~lG 246 (276)
.|+|+|++|++|+..+.. .+||||++++++...+|++++++.||.|||.|.|.+.. ....|.|+|||++.++.+++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 389999999999998876 89999999999999999999999999999999999876 3567999999999999999999
Q ss_pred EEEEeCccccccccccCCCccC
Q 023876 247 DAEIDIQPLVTAARACETPISM 268 (276)
Q Consensus 247 ~~~l~l~~l~~~~~~~~~~~~~ 268 (276)
++.++|.++........|..+.
T Consensus 81 ~~~~~l~~l~~~~~~~~w~~L~ 102 (123)
T cd04025 81 KVVFSIQTLQQAKQEEGWFRLL 102 (123)
T ss_pred EEEEEHHHcccCCCCCCEEECC
Confidence 9999999997665555555443
No 35
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.72 E-value=4.3e-17 Score=126.27 Aligned_cols=101 Identities=25% Similarity=0.316 Sum_probs=87.1
Q ss_pred hhhhcccceeeEEEEEEEeeecCCCCCC--CCCCcEEEEEEC-----CeeeccccccCCCCCeEeeEEEEEeeC---CCC
Q 023876 158 NSLVAMVEFVGLIKVNVVKGTNLAVRDV--MTSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE---NIP 227 (276)
Q Consensus 158 ~~~~~~~~~~g~L~V~v~~a~~L~~~~~--~~~dpyv~v~l~-----~~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~ 227 (276)
.....|....+.|.|+|++|++|+.++. +.+||||++++. ..+.+|++++++.||+|||+|.|.+.. ...
T Consensus 5 ~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~ 84 (128)
T cd08392 5 EFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSR 84 (128)
T ss_pred EEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCc
Confidence 3445677778899999999999998875 489999999983 236799999999999999999999865 356
Q ss_pred cEEEEEEEcCCCCCCceeEEEEEeCcccccc
Q 023876 228 PLKVLVYDKDTFTTDDFMGDAEIDIQPLVTA 258 (276)
Q Consensus 228 ~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~ 258 (276)
.|.|.|||.+.++++++||++.|+|.++...
T Consensus 85 ~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~ 115 (128)
T cd08392 85 QLQVSVWHSRTLKRRVFLGEVLIPLADWDFE 115 (128)
T ss_pred EEEEEEEeCCCCcCcceEEEEEEEcCCcccC
Confidence 8999999999999999999999999988654
No 36
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.72 E-value=6.1e-17 Score=125.26 Aligned_cols=109 Identities=28% Similarity=0.309 Sum_probs=90.8
Q ss_pred hhhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC-----CeeeccccccCCCCCeEeeEEEEEeeC---CCC
Q 023876 157 ANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE---NIP 227 (276)
Q Consensus 157 ~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~-----~~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~ 227 (276)
+.....|....+.|.|+|++|++|+..+.. .+||||++.+. ..+.+|++++++.||+|||+|.|.+.. ...
T Consensus 5 l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~ 84 (127)
T cd04030 5 IQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRR 84 (127)
T ss_pred EEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCC
Confidence 334456777788999999999999999876 89999999984 457899999999999999999999854 346
Q ss_pred cEEEEEEEcCCC--CCCceeEEEEEeCccccccccccCCC
Q 023876 228 PLKVLVYDKDTF--TTDDFMGDAEIDIQPLVTAARACETP 265 (276)
Q Consensus 228 ~L~i~v~d~~~~--~~d~~lG~~~l~l~~l~~~~~~~~~~ 265 (276)
.|.|.|||++.+ +.+++||++.++|.++..+.....|.
T Consensus 85 ~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~ 124 (127)
T cd04030 85 TLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWY 124 (127)
T ss_pred EEEEEEEECCcccCCCCceEEEEEEecccccccCCccceE
Confidence 899999999875 68999999999999987655444443
No 37
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.71 E-value=1.9e-17 Score=129.54 Aligned_cols=98 Identities=22% Similarity=0.386 Sum_probs=84.5
Q ss_pred hhhhhcccceeeEEEEEEEeeecCCCCCC---CCCCcEEEEEECC-----eeeccccccCCCCCeEeeEEEEEeeC---C
Q 023876 157 ANSLVAMVEFVGLIKVNVVKGTNLAVRDV---MTSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPE---N 225 (276)
Q Consensus 157 ~~~~~~~~~~~g~L~V~v~~a~~L~~~~~---~~~dpyv~v~l~~-----~~~~T~~~~~t~nP~w~e~~~f~~~~---~ 225 (276)
+.....|....+.|.|+|++|++|+.++. ..+||||++++.. .+.+|+++++++||+|||.|.|.++. .
T Consensus 4 l~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~ 83 (138)
T cd08407 4 VLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLA 83 (138)
T ss_pred EEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhC
Confidence 33456788888999999999999999873 2589999999833 25689999999999999999999975 3
Q ss_pred CCcEEEEEEEcCCCCCCceeEEEEEeCcc
Q 023876 226 IPPLKVLVYDKDTFTTDDFMGDAEIDIQP 254 (276)
Q Consensus 226 ~~~L~i~v~d~~~~~~d~~lG~~~l~l~~ 254 (276)
...|.|+|||++.++++++||++.+++..
T Consensus 84 ~~~L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 84 ASSVELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred ccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence 56799999999999999999999999975
No 38
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.71 E-value=6.2e-17 Score=122.19 Aligned_cols=88 Identities=38% Similarity=0.664 Sum_probs=80.4
Q ss_pred EEEEEEeeecCCCCCC-C-CCCcEEEEEECCeeeccccccCCCCCeE-eeEEEEEeeC---CCCcEEEEEEEcCCCCCCc
Q 023876 170 IKVNVVKGTNLAVRDV-M-TSDPYVILALGHQTVKTRVIKSNLNPVW-NESLMLSIPE---NIPPLKVLVYDKDTFTTDD 243 (276)
Q Consensus 170 L~V~v~~a~~L~~~~~-~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w-~e~~~f~~~~---~~~~L~i~v~d~~~~~~d~ 243 (276)
|.|+|++|++|+.++. . .+||||+++++..+++|+++++++||.| ||.|.|.+.. ....|.|+|||++.+++++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 5799999999998874 3 7899999999999999999999999999 9999999865 2468999999999999999
Q ss_pred eeEEEEEeCccccc
Q 023876 244 FMGDAEIDIQPLVT 257 (276)
Q Consensus 244 ~lG~~~l~l~~l~~ 257 (276)
+||++.++|.++..
T Consensus 81 ~iG~~~~~l~~l~~ 94 (110)
T cd08688 81 AIGKVYIDLNPLLL 94 (110)
T ss_pred ceEEEEEeHHHhcc
Confidence 99999999999986
No 39
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.71 E-value=7.4e-17 Score=125.08 Aligned_cols=102 Identities=28% Similarity=0.361 Sum_probs=85.3
Q ss_pred hhhhhcccceeeEEEEEEEeeecCCCCCC--CCCCcEEEEEEC---CeeeccccccCCCCCeEeeEEEEE-eeC---CCC
Q 023876 157 ANSLVAMVEFVGLIKVNVVKGTNLAVRDV--MTSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLS-IPE---NIP 227 (276)
Q Consensus 157 ~~~~~~~~~~~g~L~V~v~~a~~L~~~~~--~~~dpyv~v~l~---~~~~~T~~~~~t~nP~w~e~~~f~-~~~---~~~ 227 (276)
+.....|....+.|.|+|++|++|+..+. +.+||||++.+. .++.+|++++++.||+|||+|.|. +.. ...
T Consensus 5 l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~ 84 (128)
T cd08388 5 LFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDL 84 (128)
T ss_pred EEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCC
Confidence 33445667777899999999999998775 378999999984 446799999999999999999994 432 335
Q ss_pred cEEEEEEEcCCCCCCceeEEEEEeCcccccc
Q 023876 228 PLKVLVYDKDTFTTDDFMGDAEIDIQPLVTA 258 (276)
Q Consensus 228 ~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~ 258 (276)
.|.|+|||++.++++++||++.++|.++...
T Consensus 85 ~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~ 115 (128)
T cd08388 85 SLHFAVLSFDRYSRDDVIGEVVCPLAGADLL 115 (128)
T ss_pred EEEEEEEEcCCCCCCceeEEEEEeccccCCC
Confidence 7999999999999999999999999988654
No 40
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.71 E-value=1e-16 Score=123.65 Aligned_cols=91 Identities=29% Similarity=0.366 Sum_probs=79.9
Q ss_pred eeeEEEEEEEeeecCCCCCCCCCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeC--CCCcEEEEEEEcCCCCCCc
Q 023876 166 FVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVLVYDKDTFTTDD 243 (276)
Q Consensus 166 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~--~~~~L~i~v~d~~~~~~d~ 243 (276)
-++.|.|+|++|++|+....+.+||||+++++++.++|++++++.||+|||+|.|.... ....|+|+|||++.++.|+
T Consensus 26 ~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd 105 (127)
T cd04032 26 GLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDD 105 (127)
T ss_pred CcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCC
Confidence 45799999999999985333388999999999889999999999999999999997532 4678999999999999999
Q ss_pred eeEEEEEeCcccc
Q 023876 244 FMGDAEIDIQPLV 256 (276)
Q Consensus 244 ~lG~~~l~l~~l~ 256 (276)
+||++.++|....
T Consensus 106 ~IG~~~i~l~~~~ 118 (127)
T cd04032 106 LLGTCSVVPEAGV 118 (127)
T ss_pred eeEEEEEEecCCc
Confidence 9999999998655
No 41
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.71 E-value=8.8e-17 Score=123.98 Aligned_cols=97 Identities=28% Similarity=0.412 Sum_probs=84.6
Q ss_pred hhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eeeccccccCCCCCeEeeEEEEEeeC----CCCc
Q 023876 159 SLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPE----NIPP 228 (276)
Q Consensus 159 ~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~~T~~~~~t~nP~w~e~~~f~~~~----~~~~ 228 (276)
....|....+.|.|+|++|++|+..+.. .+||||++++.. .+.+|++++++.||+|||.|.|.+.. ....
T Consensus 7 ~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~ 86 (125)
T cd04031 7 IQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERT 86 (125)
T ss_pred EEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCE
Confidence 3456777788999999999999998876 899999999853 57799999999999999999998643 3468
Q ss_pred EEEEEEEcCCCCCCceeEEEEEeCccc
Q 023876 229 LKVLVYDKDTFTTDDFMGDAEIDIQPL 255 (276)
Q Consensus 229 L~i~v~d~~~~~~d~~lG~~~l~l~~l 255 (276)
|.|+|||++.++.+++||++.++|.+.
T Consensus 87 l~~~V~d~~~~~~~~~iG~~~i~l~~~ 113 (125)
T cd04031 87 LEVTVWDYDRDGENDFLGEVVIDLADA 113 (125)
T ss_pred EEEEEEeCCCCCCCcEeeEEEEecccc
Confidence 999999999999999999999999983
No 42
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.70 E-value=9.4e-17 Score=129.38 Aligned_cols=102 Identities=27% Similarity=0.395 Sum_probs=86.4
Q ss_pred eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE-----CCeeeccccccCCCCCeEeeEEEEEeeC----CCCcEEEEEEE
Q 023876 166 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYD 235 (276)
Q Consensus 166 ~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l-----~~~~~~T~~~~~t~nP~w~e~~~f~~~~----~~~~L~i~v~d 235 (276)
..+.|.|+|++|++|+..+.. .+||||++++ +..+.+|++++++.||.|||.|.|.+.. ....|.|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 568999999999999998866 8999999988 3357899999999999999999998532 33579999999
Q ss_pred cCCCCCCceeEEEEEeCccccccccccCCCcc
Q 023876 236 KDTFTTDDFMGDAEIDIQPLVTAARACETPIS 267 (276)
Q Consensus 236 ~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~ 267 (276)
++.++++++||++.+++.++.......+|..+
T Consensus 105 ~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 105 HDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred CCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence 99999999999999999998765555555444
No 43
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.70 E-value=1.2e-16 Score=123.71 Aligned_cols=90 Identities=37% Similarity=0.680 Sum_probs=83.4
Q ss_pred eEEEEEEEeeecCCCCCC--C-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCCCCCCc
Q 023876 168 GLIKVNVVKGTNLAVRDV--M-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDD 243 (276)
Q Consensus 168 g~L~V~v~~a~~L~~~~~--~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~~~~d~ 243 (276)
|.|.|+|++|++|+..+. . .+||||++.++.++.+|++++++.||.|||.|.|.+.. ....|.|+|||++..+.++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 679999999999998887 5 89999999999999999999999999999999999976 5678999999999998999
Q ss_pred eeEEEEEeCccccc
Q 023876 244 FMGDAEIDIQPLVT 257 (276)
Q Consensus 244 ~lG~~~l~l~~l~~ 257 (276)
+||++.++|.++..
T Consensus 81 ~lG~~~i~l~~~~~ 94 (128)
T cd04024 81 YLGEFDIALEEVFA 94 (128)
T ss_pred cceEEEEEHHHhhc
Confidence 99999999999874
No 44
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.70 E-value=1.2e-16 Score=122.34 Aligned_cols=97 Identities=32% Similarity=0.484 Sum_probs=83.7
Q ss_pred EEEEEEeeecCCCCCCC-CCCcEEEEEEC---CeeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCCCCCCce
Q 023876 170 IKVNVVKGTNLAVRDVM-TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDF 244 (276)
Q Consensus 170 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~---~~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~~~~d~~ 244 (276)
|.|+|++|++|+..+.. .+||||++.++ ....+|++++++.||+|||.|.|.+.. ....|.|+|||++.+ .|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 78999999999988866 89999999985 357899999999999999999999865 345699999999998 8999
Q ss_pred eEEEEEeCccccccccccCCCcc
Q 023876 245 MGDAEIDIQPLVTAARACETPIS 267 (276)
Q Consensus 245 lG~~~l~l~~l~~~~~~~~~~~~ 267 (276)
||++.+++.++..+.....+..+
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~~L 103 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTFSL 103 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEEEC
Confidence 99999999999877665555444
No 45
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.70 E-value=1.3e-16 Score=120.72 Aligned_cols=89 Identities=35% Similarity=0.652 Sum_probs=79.2
Q ss_pred eEEEEEEEeeecCCCCCCC--CCCcEEEEEEC---CeeeccccccCCCCCeEeeEEEEEeeC----CCCcEEEEEEEcCC
Q 023876 168 GLIKVNVVKGTNLAVRDVM--TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDKDT 238 (276)
Q Consensus 168 g~L~V~v~~a~~L~~~~~~--~~dpyv~v~l~---~~~~~T~~~~~t~nP~w~e~~~f~~~~----~~~~L~i~v~d~~~ 238 (276)
|.|.|+|++|++|+..+.. .+||||++++. ....+|+++++++||+|||.|.|.+.. ....|.|+|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999988764 78999999983 346799999999999999999998754 24689999999999
Q ss_pred CCCCceeEEEEEeCcccc
Q 023876 239 FTTDDFMGDAEIDIQPLV 256 (276)
Q Consensus 239 ~~~d~~lG~~~l~l~~l~ 256 (276)
++.|++||++.+++.++.
T Consensus 81 ~~~dd~lG~~~i~l~~l~ 98 (111)
T cd04041 81 FTADDRLGRVEIDLKELI 98 (111)
T ss_pred CCCCCcceEEEEEHHHHh
Confidence 999999999999999997
No 46
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.70 E-value=9.5e-17 Score=125.54 Aligned_cols=98 Identities=26% Similarity=0.315 Sum_probs=84.2
Q ss_pred hhhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC---C--eeeccccccCCCCCeEeeEEEEEeeC---CCC
Q 023876 157 ANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG---H--QTVKTRVIKSNLNPVWNESLMLSIPE---NIP 227 (276)
Q Consensus 157 ~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~---~--~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~ 227 (276)
+..+..|....+.|.|+|++|++|+..+.. .+||||++++. . .+.+|+++++++||+|||+|.|.+.. ...
T Consensus 4 i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~ 83 (136)
T cd08406 4 ILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDL 83 (136)
T ss_pred EEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCc
Confidence 334566777888999999999999998866 89999999982 2 25689999999999999999999865 456
Q ss_pred cEEEEEEEcCCCCCCceeEEEEEeCcc
Q 023876 228 PLKVLVYDKDTFTTDDFMGDAEIDIQP 254 (276)
Q Consensus 228 ~L~i~v~d~~~~~~d~~lG~~~l~l~~ 254 (276)
.|.|+|||++.++++++||++.+....
T Consensus 84 ~l~~~V~~~d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 84 SLRVTVAESTEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred EEEEEEEeCCCCCCCCeeEEEEECCCC
Confidence 799999999999999999999997764
No 47
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.70 E-value=1.2e-16 Score=123.33 Aligned_cols=109 Identities=24% Similarity=0.357 Sum_probs=90.2
Q ss_pred hhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE---CCeeeccccccCCCCCeEeeEEEEEeeC----CCCcE
Q 023876 158 NSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPE----NIPPL 229 (276)
Q Consensus 158 ~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l---~~~~~~T~~~~~t~nP~w~e~~~f~~~~----~~~~L 229 (276)
.....|....+.|.|+|++|++|+..+.. .+||||++.+ +....+|++++++.||.|||.|.|.+.. ....|
T Consensus 6 ~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l 85 (125)
T cd08386 6 QFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVL 85 (125)
T ss_pred EEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEE
Confidence 33455666678999999999999998876 8999999998 3467899999999999999999997532 23579
Q ss_pred EEEEEEcCCCCCCceeEEEEEeCccccccccccCCCc
Q 023876 230 KVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPI 266 (276)
Q Consensus 230 ~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~ 266 (276)
.|+|||++.++++++||++.++|.++..+.....|..
T Consensus 86 ~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~ 122 (125)
T cd08386 86 YLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKD 122 (125)
T ss_pred EEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEe
Confidence 9999999999999999999999999886555444443
No 48
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.70 E-value=1.5e-16 Score=119.08 Aligned_cols=88 Identities=26% Similarity=0.455 Sum_probs=79.7
Q ss_pred EEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCCCCCCceeE
Q 023876 169 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFMG 246 (276)
Q Consensus 169 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~~~~d~~lG 246 (276)
.|.|+|++|++|+..+.. .+||||+++++++..+|++++++.||+|||.|.|.+.. ....|.|+|||++. +++||
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG 77 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG 77 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence 378999999999998766 89999999999999999999999999999999999976 45689999999876 78999
Q ss_pred EEEEeCccccccc
Q 023876 247 DAEIDIQPLVTAA 259 (276)
Q Consensus 247 ~~~l~l~~l~~~~ 259 (276)
++.++|.++....
T Consensus 78 ~~~i~l~~l~~~~ 90 (105)
T cd04050 78 SLTLPLSELLKEP 90 (105)
T ss_pred EEEEEHHHhhccc
Confidence 9999999988653
No 49
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.70 E-value=2.5e-16 Score=120.37 Aligned_cols=92 Identities=30% Similarity=0.581 Sum_probs=84.1
Q ss_pred eEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCceeE
Q 023876 168 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMG 246 (276)
Q Consensus 168 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~lG 246 (276)
|.|.|+|++|++|+..+.. .+||||++.++....+|++++++.||.|+|+|.|.+......|.|+|||++..+++++||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG 80 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence 5799999999999998877 899999999998889999999999999999999998765678999999999988999999
Q ss_pred EEEEeCccccccc
Q 023876 247 DAEIDIQPLVTAA 259 (276)
Q Consensus 247 ~~~l~l~~l~~~~ 259 (276)
++.+++.++..+.
T Consensus 81 ~~~~~l~~~~~~~ 93 (119)
T cd08377 81 KVAIPLLSIKNGE 93 (119)
T ss_pred EEEEEHHHCCCCC
Confidence 9999999987543
No 50
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.70 E-value=1.3e-16 Score=124.55 Aligned_cols=101 Identities=27% Similarity=0.346 Sum_probs=86.7
Q ss_pred hhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC-------CeeeccccccCCCCCeEeeEEEEEeeC-----CC
Q 023876 160 LVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG-------HQTVKTRVIKSNLNPVWNESLMLSIPE-----NI 226 (276)
Q Consensus 160 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~-------~~~~~T~~~~~t~nP~w~e~~~f~~~~-----~~ 226 (276)
...|....+.|.|+|++|++|+..+.. .+||||++++. ....+|+++++++||+|||.|.|.+.. ..
T Consensus 8 ~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~ 87 (133)
T cd04009 8 KAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEG 87 (133)
T ss_pred EEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCC
Confidence 345666678899999999999998776 89999999984 347899999999999999999999864 24
Q ss_pred CcEEEEEEEcCCCCCCceeEEEEEeCcccccccc
Q 023876 227 PPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAAR 260 (276)
Q Consensus 227 ~~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~ 260 (276)
..|.|+|||++.++++++||++.++|+++...+.
T Consensus 88 ~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~ 121 (133)
T cd04009 88 ALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGVED 121 (133)
T ss_pred CEEEEEEEecCCCCCCcEeEEEEEeHHHCCcccc
Confidence 5799999999999999999999999999875443
No 51
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.69 E-value=1.2e-16 Score=123.20 Aligned_cols=109 Identities=20% Similarity=0.294 Sum_probs=90.5
Q ss_pred hhhhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE---CCeeeccccccCCCCCeEeeEEEEE-eeC---CCC
Q 023876 156 KANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLS-IPE---NIP 227 (276)
Q Consensus 156 ~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l---~~~~~~T~~~~~t~nP~w~e~~~f~-~~~---~~~ 227 (276)
.+..+..|....+.|.|+|++|++|+..+.. ..||||++.+ ..++.+|++.+. .||+|||.|.|. +.. ...
T Consensus 4 ~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~ 82 (124)
T cd08389 4 DLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNM 82 (124)
T ss_pred EEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccC
Confidence 3444567788888999999999999998876 7899999877 245789999888 999999999998 543 456
Q ss_pred cEEEEEEEcCCCCCCceeEEEEEeCccccccccccCCC
Q 023876 228 PLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETP 265 (276)
Q Consensus 228 ~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~ 265 (276)
.|.|+|||++.++++++||++.++|+++..+.....|.
T Consensus 83 ~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~ 120 (124)
T cd08389 83 ALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWL 120 (124)
T ss_pred EEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEE
Confidence 79999999999999999999999999997665544443
No 52
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.69 E-value=2.4e-16 Score=122.06 Aligned_cols=98 Identities=29% Similarity=0.444 Sum_probs=83.6
Q ss_pred EEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeCC----CCcEEEEEEEcCCCC-CC
Q 023876 169 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPEN----IPPLKVLVYDKDTFT-TD 242 (276)
Q Consensus 169 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~~----~~~L~i~v~d~~~~~-~d 242 (276)
.|.|+|++|++|+..+.. .+||||++.+++++.+|++++++.||.|||.|.|.+... ...|.|+|||++.++ .+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 378999999999988876 899999999999999999999999999999999998642 357999999999886 89
Q ss_pred ceeEEEEEeCcccc-ccccccCCCc
Q 023876 243 DFMGDAEIDIQPLV-TAARACETPI 266 (276)
Q Consensus 243 ~~lG~~~l~l~~l~-~~~~~~~~~~ 266 (276)
++||++.++++++. .+.....|..
T Consensus 81 ~~lG~v~i~l~~l~~~~~~~~~w~~ 105 (127)
T cd04022 81 SFLGRVRISGTSFVPPSEAVVQRYP 105 (127)
T ss_pred CeeeEEEEcHHHcCCCCCccceEeE
Confidence 99999999999987 3333333433
No 53
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.69 E-value=1.5e-16 Score=121.81 Aligned_cols=99 Identities=18% Similarity=0.292 Sum_probs=82.4
Q ss_pred eeeEEEEEEEeeecCCCCCCCCCCcEEEEEECC-----eeeccccccCCCCCeEeeEEEEEeeC--CCCcEEEEEEEcCC
Q 023876 166 FVGLIKVNVVKGTNLAVRDVMTSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVLVYDKDT 238 (276)
Q Consensus 166 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~-----~~~~T~~~~~t~nP~w~e~~~f~~~~--~~~~L~i~v~d~~~ 238 (276)
..+.|.|+|++|++|+.++.+.+||||++++.. .+.+|++++++.||+|||.|.|.+.. ....|.|+|||++.
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~ 89 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS 89 (119)
T ss_pred cCCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence 467899999999999998844899999999942 35689999999999999999999865 33568899999998
Q ss_pred CC-CCceeEEEEEeCccccccccccCC
Q 023876 239 FT-TDDFMGDAEIDIQPLVTAARACET 264 (276)
Q Consensus 239 ~~-~d~~lG~~~l~l~~l~~~~~~~~~ 264 (276)
.+ .+++||++.|+|.++..+.....|
T Consensus 90 ~~~~~~~lG~~~i~l~~~~~~~~~~~W 116 (119)
T cd08685 90 KSRDSGLLGCMSFGVKSIVNQKEISGW 116 (119)
T ss_pred CcCCCEEEEEEEecHHHhccCccccce
Confidence 76 478999999999999855443333
No 54
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.69 E-value=2.1e-16 Score=121.38 Aligned_cols=99 Identities=21% Similarity=0.365 Sum_probs=84.8
Q ss_pred EEEEEEeeecCCCCCC-C-CCCcEEEEEECCe-eeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCceeE
Q 023876 170 IKVNVVKGTNLAVRDV-M-TSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMG 246 (276)
Q Consensus 170 L~V~v~~a~~L~~~~~-~-~~dpyv~v~l~~~-~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~lG 246 (276)
|.|+|++|++|+..+. . .+||||.+.++++ ..+|+++++|+||.|||.|.|.+......|.|.|||++.++++++||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG 81 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG 81 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence 6799999999998743 3 7899999999765 57999999999999999999999875678999999999999999999
Q ss_pred EEEEeCccccccccccCCCccC
Q 023876 247 DAEIDIQPLVTAARACETPISM 268 (276)
Q Consensus 247 ~~~l~l~~l~~~~~~~~~~~~~ 268 (276)
.+.++|+++..+...+.|..+.
T Consensus 82 ~~~i~l~~l~~~~~~~~w~~L~ 103 (121)
T cd08401 82 KVAIKKEDLHKYYGKDTWFPLQ 103 (121)
T ss_pred EEEEEHHHccCCCCcEeeEEEE
Confidence 9999999998665555454443
No 55
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.69 E-value=2.2e-16 Score=120.97 Aligned_cols=100 Identities=35% Similarity=0.564 Sum_probs=86.6
Q ss_pred eEEEEEEEeeecCCCCCC-------CCCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCCC
Q 023876 168 GLIKVNVVKGTNLAVRDV-------MTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTF 239 (276)
Q Consensus 168 g~L~V~v~~a~~L~~~~~-------~~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~~ 239 (276)
|.|.|+|++|++|+..+. +.+||||++.++++.++|++++++.||.|||.|.|.+.. ....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 579999999999998764 268999999999999999999999999999999999865 567899999999988
Q ss_pred CCCceeEEEEEeCccccccccccCCCccC
Q 023876 240 TTDDFMGDAEIDIQPLVTAARACETPISM 268 (276)
Q Consensus 240 ~~d~~lG~~~l~l~~l~~~~~~~~~~~~~ 268 (276)
.+++||.+.++|.++........|..+.
T Consensus 81 -~~~~iG~~~i~l~~l~~~~~~~~w~~L~ 108 (121)
T cd08391 81 -KDDFLGRLSIDLGSVEKKGFIDEWLPLE 108 (121)
T ss_pred -CCCcEEEEEEEHHHhcccCccceEEECc
Confidence 8999999999999998765555554443
No 56
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.69 E-value=3.2e-16 Score=120.17 Aligned_cols=102 Identities=23% Similarity=0.422 Sum_probs=88.1
Q ss_pred eEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-eeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCcee
Q 023876 168 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFM 245 (276)
Q Consensus 168 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~l 245 (276)
|.|.|+|++|++|+..+.. .+||||++.+++ ...+|.+++++.||.|||.|.|.+......|.|+|||++..++|++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I 80 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL 80 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence 5799999999999998876 899999999976 46899999999999999999998877667899999999999999999
Q ss_pred EEEEEeCccccccccccCCCccCCC
Q 023876 246 GDAEIDIQPLVTAARACETPISMSP 270 (276)
Q Consensus 246 G~~~l~l~~l~~~~~~~~~~~~~~~ 270 (276)
|++.++|.++... ....+..+++.
T Consensus 81 G~~~~~l~~l~~~-~~~~~~~~~~~ 104 (120)
T cd04045 81 GSVEINVSDLIKK-NEDGKYVEYDD 104 (120)
T ss_pred eEEEEeHHHhhCC-CCCceEEecCC
Confidence 9999999999876 44445544443
No 57
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.69 E-value=1.8e-16 Score=122.65 Aligned_cols=97 Identities=23% Similarity=0.388 Sum_probs=83.5
Q ss_pred EEEEEEeeecCCCCCCCCCCcEEEEEECC--eeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCceeEE
Q 023876 170 IKVNVVKGTNLAVRDVMTSDPYVILALGH--QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGD 247 (276)
Q Consensus 170 L~V~v~~a~~L~~~~~~~~dpyv~v~l~~--~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~lG~ 247 (276)
|.|+|++|++|+. ..+.+||||++.++. ++.+|++++++.||+|||.|.|.+......|.|+|||++..+.+++||+
T Consensus 1 l~v~v~~A~~L~~-~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~ 79 (126)
T cd08678 1 LLVKNIKANGLSE-AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGL 79 (126)
T ss_pred CEEEEEEecCCCC-CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEE
Confidence 5799999999988 444899999999973 5689999999999999999999997656789999999999999999999
Q ss_pred EEEeCccccccccccCCCcc
Q 023876 248 AEIDIQPLVTAARACETPIS 267 (276)
Q Consensus 248 ~~l~l~~l~~~~~~~~~~~~ 267 (276)
+.+++.++........+..+
T Consensus 80 ~~i~l~~l~~~~~~~~~~~L 99 (126)
T cd08678 80 AIVPFDELRKNPSGRQIFPL 99 (126)
T ss_pred EEEeHHHhccCCceeEEEEe
Confidence 99999998876655544333
No 58
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.69 E-value=2e-16 Score=121.67 Aligned_cols=104 Identities=30% Similarity=0.438 Sum_probs=87.5
Q ss_pred hcccceeeEEEEEEEeeecCCCCC-CC-CCCcEEEEEEC-----CeeeccccccCCCCCeEeeEEEEEeeC---CCCcEE
Q 023876 161 VAMVEFVGLIKVNVVKGTNLAVRD-VM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLK 230 (276)
Q Consensus 161 ~~~~~~~g~L~V~v~~a~~L~~~~-~~-~~dpyv~v~l~-----~~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~ 230 (276)
..|....+.|.|+|++|++|+..+ .. .+||||++.+. ..+.+|++++++.||+|||.|.|.+.. ....|.
T Consensus 7 l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~ 86 (123)
T cd08521 7 LSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQ 86 (123)
T ss_pred EEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEE
Confidence 456677789999999999999988 45 89999999882 146799999999999999999999865 346899
Q ss_pred EEEEEcCCCCCCceeEEEEEeCccccccccccCC
Q 023876 231 VLVYDKDTFTTDDFMGDAEIDIQPLVTAARACET 264 (276)
Q Consensus 231 i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~ 264 (276)
|+|||++.++++++||++.++|.++..+.....|
T Consensus 87 i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w 120 (123)
T cd08521 87 LSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEW 120 (123)
T ss_pred EEEEeCCCCcCCceeeEEEEecccccccCCCccE
Confidence 9999999999999999999999999655444333
No 59
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.68 E-value=4.2e-16 Score=119.88 Aligned_cols=96 Identities=30% Similarity=0.582 Sum_probs=84.9
Q ss_pred eeEEEEEEEeeecCCCCCCC--CCCcEEEEEECC--eeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCC
Q 023876 167 VGLIKVNVVKGTNLAVRDVM--TSDPYVILALGH--QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTD 242 (276)
Q Consensus 167 ~g~L~V~v~~a~~L~~~~~~--~~dpyv~v~l~~--~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d 242 (276)
+|.|.|+|++|++|+..+.. .+||||++.++. ...+|++++++.||.|||.|.|.+......|.|+|||++..+.|
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d 80 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKD 80 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCC
Confidence 47899999999999976533 689999999977 78899999999999999999999886678999999999999899
Q ss_pred ceeEEEEEeCcccccccccc
Q 023876 243 DFMGDAEIDIQPLVTAARAC 262 (276)
Q Consensus 243 ~~lG~~~l~l~~l~~~~~~~ 262 (276)
++||.+.++|.++.......
T Consensus 81 ~~iG~~~~~l~~l~~~~~~~ 100 (124)
T cd04044 81 KLIGTAEFDLSSLLQNPEQE 100 (124)
T ss_pred ceeEEEEEEHHHhccCcccc
Confidence 99999999999998765543
No 60
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.68 E-value=3.8e-16 Score=120.36 Aligned_cols=100 Identities=31% Similarity=0.508 Sum_probs=87.3
Q ss_pred eEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccC-CCCCeEeeEEEEEeeCC----CCcEEEEEEEcCCCCC
Q 023876 168 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKS-NLNPVWNESLMLSIPEN----IPPLKVLVYDKDTFTT 241 (276)
Q Consensus 168 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~-t~nP~w~e~~~f~~~~~----~~~L~i~v~d~~~~~~ 241 (276)
|.|.|+|++|++|+..+.. .+||||++.++++..+|++.++ +.||.|||.|.|.+... ...|.|+|||++.++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 5799999999999988876 8999999999998889998875 89999999999999764 4689999999999999
Q ss_pred CceeEEEEEeCccccccccccCCCcc
Q 023876 242 DDFMGDAEIDIQPLVTAARACETPIS 267 (276)
Q Consensus 242 d~~lG~~~l~l~~l~~~~~~~~~~~~ 267 (276)
+++||++.++|.++........+..+
T Consensus 81 d~~iG~~~i~l~~l~~~~~~~~~~~l 106 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGVEPGTAEL 106 (124)
T ss_pred CCeEEEEEEEhHHhhhCCCCcCceEe
Confidence 99999999999999876655554443
No 61
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=2.9e-16 Score=124.63 Aligned_cols=90 Identities=28% Similarity=0.428 Sum_probs=80.6
Q ss_pred EEEEEEeeecCCCCCCC---------------CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeC--CCCcEEEE
Q 023876 170 IKVNVVKGTNLAVRDVM---------------TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVL 232 (276)
Q Consensus 170 L~V~v~~a~~L~~~~~~---------------~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~--~~~~L~i~ 232 (276)
|.|+|++|++|+.++.. .+||||++.+++++.+|++++++.||+|||+|.|.+.. ....|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 78999999999998743 47999999999999999999999999999999998743 45689999
Q ss_pred EEEcCCCCCCceeEEEEEeCccccccc
Q 023876 233 VYDKDTFTTDDFMGDAEIDIQPLVTAA 259 (276)
Q Consensus 233 v~d~~~~~~d~~lG~~~l~l~~l~~~~ 259 (276)
|||++..++|++||.+.++|.++....
T Consensus 82 v~D~d~~~~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 82 IRDWDRVGNDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEECCCCCCCCEEEEEEEeHHHhccCC
Confidence 999999999999999999999887644
No 62
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.68 E-value=4.4e-16 Score=123.83 Aligned_cols=90 Identities=29% Similarity=0.419 Sum_probs=81.2
Q ss_pred EEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccC-CCCCeEeeEEEEEeeC-CCCcEEEEEEEcCCCCCCcee
Q 023876 169 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKS-NLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFM 245 (276)
Q Consensus 169 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~-t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~~~~d~~l 245 (276)
+|.|+|++|++|+..+.. .+||||++.++++..+|+++.+ ++||+|||.|.|.+.. ....|.|+|||++..+++++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 488999999999999887 8999999999999999999876 6999999999999865 346899999999998899999
Q ss_pred EEEEEeCcccccc
Q 023876 246 GDAEIDIQPLVTA 258 (276)
Q Consensus 246 G~~~l~l~~l~~~ 258 (276)
|++.++|.++..+
T Consensus 81 G~v~i~L~~l~~~ 93 (150)
T cd04019 81 GRAVIPLNDIERR 93 (150)
T ss_pred EEEEEEHHHCccc
Confidence 9999999998653
No 63
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.68 E-value=3.8e-16 Score=123.71 Aligned_cols=97 Identities=24% Similarity=0.330 Sum_probs=80.7
Q ss_pred EEEEEEeeecCCCCCCCCCCcEEEEEECC-----eeeccccccCCCCCeEeeEEEEEee------------C----CCCc
Q 023876 170 IKVNVVKGTNLAVRDVMTSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIP------------E----NIPP 228 (276)
Q Consensus 170 L~V~v~~a~~L~~~~~~~~dpyv~v~l~~-----~~~~T~~~~~t~nP~w~e~~~f~~~------------~----~~~~ 228 (276)
|.|+|++|++|+. ..+.+||||++++.. .+.+|+++++++||+|||.|.|.+. . ....
T Consensus 2 L~V~Vi~ArnL~~-~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T cd04010 2 LSVRVIECSDLAL-KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLE 80 (148)
T ss_pred EEEEEEeCcCCCC-CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEE
Confidence 7899999999988 334899999999955 5779999999999999999999984 1 1246
Q ss_pred EEEEEEEcCCCCCCceeEEEEEeCcccccc-ccccCCCcc
Q 023876 229 LKVLVYDKDTFTTDDFMGDAEIDIQPLVTA-ARACETPIS 267 (276)
Q Consensus 229 L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~-~~~~~~~~~ 267 (276)
|.|.|||++.++.++|||++.|+|.++... .....|..+
T Consensus 81 L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L 120 (148)
T cd04010 81 LRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFL 120 (148)
T ss_pred EEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeec
Confidence 899999999988999999999999998876 334444443
No 64
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.67 E-value=9.6e-16 Score=118.52 Aligned_cols=89 Identities=25% Similarity=0.478 Sum_probs=80.9
Q ss_pred eEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCceeE
Q 023876 168 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMG 246 (276)
Q Consensus 168 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~lG 246 (276)
.+|.|+|++|++|...+.. .+||||++.++++..+|++++++.||.|||.|.|.+......|.|+|||++.. .|++||
T Consensus 3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~lG 81 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEFLG 81 (126)
T ss_pred EEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCceE
Confidence 5799999999999988876 89999999999999999999999999999999998877677899999999887 489999
Q ss_pred EEEEeCccccc
Q 023876 247 DAEIDIQPLVT 257 (276)
Q Consensus 247 ~~~l~l~~l~~ 257 (276)
.+.+++.++..
T Consensus 82 ~~~~~l~~~~~ 92 (126)
T cd04046 82 QATLSADPNDS 92 (126)
T ss_pred EEEEecccCCC
Confidence 99999987643
No 65
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.67 E-value=1.8e-16 Score=123.73 Aligned_cols=95 Identities=31% Similarity=0.444 Sum_probs=83.8
Q ss_pred hhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC-----CeeeccccccCCCCCeEeeEEEEEeeC---CCCcEE
Q 023876 160 LVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLK 230 (276)
Q Consensus 160 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~-----~~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~ 230 (276)
+..|....+.|.|+|++|++|+..+.. .+||||++.+. ....+|+++++++||.|||+|.|.+.. ....|.
T Consensus 5 ~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~ 84 (133)
T cd08384 5 SLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLE 84 (133)
T ss_pred EEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEE
Confidence 356778889999999999999998876 89999999984 246799999999999999999999864 346799
Q ss_pred EEEEEcCCCCCCceeEEEEEeCcc
Q 023876 231 VLVYDKDTFTTDDFMGDAEIDIQP 254 (276)
Q Consensus 231 i~v~d~~~~~~d~~lG~~~l~l~~ 254 (276)
|+|||++..+.+++||++.+++..
T Consensus 85 ~~V~d~d~~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 85 ITVWDKDIGKSNDYIGGLQLGINA 108 (133)
T ss_pred EEEEeCCCCCCccEEEEEEEecCC
Confidence 999999999999999999999975
No 66
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.67 E-value=8.4e-16 Score=118.02 Aligned_cols=89 Identities=27% Similarity=0.623 Sum_probs=80.7
Q ss_pred EEEEEEeeecCCCCCCC-CCCcEEEEEECCe-eeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCceeEE
Q 023876 170 IKVNVVKGTNLAVRDVM-TSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGD 247 (276)
Q Consensus 170 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~-~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~lG~ 247 (276)
|+|+|++|++|+..+.. .+||||++.+++. ..+|+++++++||.|||.|.|.+......|.|+|||++.+++|++||+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 81 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK 81 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence 78999999999998877 8999999999765 469999999999999999999987666789999999999999999999
Q ss_pred EEEeCcccccc
Q 023876 248 AEIDIQPLVTA 258 (276)
Q Consensus 248 ~~l~l~~l~~~ 258 (276)
+.+++.++...
T Consensus 82 ~~~~~~~~~~~ 92 (121)
T cd04054 82 VSLTREVISAH 92 (121)
T ss_pred EEEcHHHhccC
Confidence 99999888754
No 67
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.67 E-value=4.4e-16 Score=119.76 Aligned_cols=105 Identities=21% Similarity=0.337 Sum_probs=88.7
Q ss_pred hhcccceeeEEEEEEEeeecCCCCC-CC-CCCcEEEEEEC---CeeeccccccCCCCCeEeeEEEEEeeC---CCCcEEE
Q 023876 160 LVAMVEFVGLIKVNVVKGTNLAVRD-VM-TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKV 231 (276)
Q Consensus 160 ~~~~~~~~g~L~V~v~~a~~L~~~~-~~-~~dpyv~v~l~---~~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~i 231 (276)
...|....+.|.|+|++|++|+..+ .. .+||||++++. ....+|++++++.||+|||.|.|.+.. ....|.|
T Consensus 6 ~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i 85 (123)
T cd08390 6 SVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRL 85 (123)
T ss_pred EEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEE
Confidence 3456777889999999999999987 44 89999999983 346789999999999999999999865 2457999
Q ss_pred EEEEcCCCCCCceeEEEEEeCccccccccccCC
Q 023876 232 LVYDKDTFTTDDFMGDAEIDIQPLVTAARACET 264 (276)
Q Consensus 232 ~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~ 264 (276)
+|||++..+.+++||++.++|.++........|
T Consensus 86 ~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w 118 (123)
T cd08390 86 SVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVW 118 (123)
T ss_pred EEEECCcCCCCcEEEEEEEeccceecCCCceEE
Confidence 999999988999999999999999876655433
No 68
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.66 E-value=5.6e-16 Score=119.91 Aligned_cols=96 Identities=18% Similarity=0.334 Sum_probs=81.8
Q ss_pred hhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE---CC--eeeccccccCCC-CCeEeeEEEEEeeC--CCCcEE
Q 023876 160 LVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL---GH--QTVKTRVIKSNL-NPVWNESLMLSIPE--NIPPLK 230 (276)
Q Consensus 160 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l---~~--~~~~T~~~~~t~-nP~w~e~~~f~~~~--~~~~L~ 230 (276)
++.|....+.|+|+|++|++|+.+... ..||||+|.+ +. .+.+|+++++++ +|+|||.|.|.++. ....|.
T Consensus 6 sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~ 85 (135)
T cd08692 6 GTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFL 85 (135)
T ss_pred EeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEE
Confidence 467889999999999999999987544 6799999988 22 468999999995 69999999999976 234678
Q ss_pred EEEEEcCCCCCCceeEEEEEeCccc
Q 023876 231 VLVYDKDTFTTDDFMGDAEIDIQPL 255 (276)
Q Consensus 231 i~v~d~~~~~~d~~lG~~~l~l~~l 255 (276)
|+|||++..+++++||++.+..+..
T Consensus 86 v~v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 86 IKLYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred EEEEeCCCCcCCceEEEEEECCccC
Confidence 9999999999999999999999764
No 69
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.66 E-value=5.8e-16 Score=121.33 Aligned_cols=98 Identities=31% Similarity=0.384 Sum_probs=84.4
Q ss_pred hhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC--C---eeeccccccCCCCCeEeeEEEEEeeC---CCCc
Q 023876 158 NSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG--H---QTVKTRVIKSNLNPVWNESLMLSIPE---NIPP 228 (276)
Q Consensus 158 ~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~--~---~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~ 228 (276)
.....|....+.|.|+|++|++|+..+.. .+||||++.+. . ...+|+++++++||.|||.|.|.+.. ....
T Consensus 5 ~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~ 84 (136)
T cd08402 5 CFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVH 84 (136)
T ss_pred EEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCE
Confidence 34467888889999999999999998876 89999999983 2 35689999999999999999999864 2347
Q ss_pred EEEEEEEcCCCCCCceeEEEEEeCccc
Q 023876 229 LKVLVYDKDTFTTDDFMGDAEIDIQPL 255 (276)
Q Consensus 229 L~i~v~d~~~~~~d~~lG~~~l~l~~l 255 (276)
|.|+|||++.++++++||++.+++...
T Consensus 85 l~~~v~d~~~~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 85 LIVTVLDYDRIGKNDPIGKVVLGCNAT 111 (136)
T ss_pred EEEEEEeCCCCCCCceeEEEEECCccC
Confidence 999999999999999999999999764
No 70
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.66 E-value=6.4e-16 Score=118.63 Aligned_cols=86 Identities=34% Similarity=0.531 Sum_probs=78.3
Q ss_pred EEEEEEEeeecCCCCCCCCCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCCCCCCceeEE
Q 023876 169 LIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFMGD 247 (276)
Q Consensus 169 ~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~~~~d~~lG~ 247 (276)
.|.|+|++|++|+.. .+||||++.++....+|++++++.||+|||+|.|.+.. ....|.|+|||++.. .+++||+
T Consensus 1 ~L~V~Vi~a~~L~~~---~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~ 76 (121)
T cd08378 1 YLYVRVVKARGLPAN---SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGG 76 (121)
T ss_pred CEEEEEEEecCCCcc---cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeee
Confidence 489999999999887 68999999999999999999999999999999999866 567899999999987 7899999
Q ss_pred EEEeCcccccc
Q 023876 248 AEIDIQPLVTA 258 (276)
Q Consensus 248 ~~l~l~~l~~~ 258 (276)
+.++|+++...
T Consensus 77 ~~i~l~~l~~~ 87 (121)
T cd08378 77 VCFDLSEVPTR 87 (121)
T ss_pred EEEEhHhCcCC
Confidence 99999998753
No 71
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.65 E-value=1.1e-15 Score=119.11 Aligned_cols=92 Identities=36% Similarity=0.681 Sum_probs=82.1
Q ss_pred EEEEEEEeeecCCCCCCC-CCCcEEEEEECCe-------eeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCC
Q 023876 169 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQ-------TVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFT 240 (276)
Q Consensus 169 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~-------~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~ 240 (276)
.|.|+|++|++|+..+.. .+||||++.+.+. ..+|++++++.||.|||.|.|.+......|.|+|||++.++
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~ 80 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT 80 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence 378999999999998876 8999999999654 46899999999999999999998775678999999999999
Q ss_pred CCceeEEEEEeCcccccccc
Q 023876 241 TDDFMGDAEIDIQPLVTAAR 260 (276)
Q Consensus 241 ~d~~lG~~~l~l~~l~~~~~ 260 (276)
.+++||++.+++.++....+
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~ 100 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTETP 100 (133)
T ss_pred CCCeeEEEEEEHHHCCCcCc
Confidence 99999999999999987654
No 72
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.65 E-value=1.6e-15 Score=121.81 Aligned_cols=104 Identities=28% Similarity=0.419 Sum_probs=88.1
Q ss_pred ceeeEEEEEEEeeecCCCCCC-----------------------------C--CCCcEEEEEECCee-eccccccCCCCC
Q 023876 165 EFVGLIKVNVVKGTNLAVRDV-----------------------------M--TSDPYVILALGHQT-VKTRVIKSNLNP 212 (276)
Q Consensus 165 ~~~g~L~V~v~~a~~L~~~~~-----------------------------~--~~dpyv~v~l~~~~-~~T~~~~~t~nP 212 (276)
..-|.|.|+|.+|++|+.+|. . .+||||++.+++.+ .+|++++++.||
T Consensus 4 llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP 83 (158)
T cd04015 4 LLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENP 83 (158)
T ss_pred EEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCC
Confidence 456899999999999999872 1 57999999998755 699999999999
Q ss_pred eEeeEEEEEeeCCCCcEEEEEEEcCCCCCCceeEEEEEeCccccccccccCCCccCC
Q 023876 213 VWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMS 269 (276)
Q Consensus 213 ~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~~~ 269 (276)
+|||.|.|.+......|.|+|||++.++ +++||.+.++++++..+.....|..+..
T Consensus 84 ~WnE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~ 139 (158)
T cd04015 84 VWNESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILD 139 (158)
T ss_pred ccceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcC
Confidence 9999999998766678999999999875 6899999999999987766666655543
No 73
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.65 E-value=2.2e-15 Score=116.47 Aligned_cols=101 Identities=20% Similarity=0.360 Sum_probs=83.3
Q ss_pred eeeEEEEEEEeeecCCCCCCCCCCcEEEEEECCe-eeccccccCCCCCeEeeEEEEEeeCC-CCcEEEEEEEcCCCCCCc
Q 023876 166 FVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPEN-IPPLKVLVYDKDTFTTDD 243 (276)
Q Consensus 166 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~-~~~T~~~~~t~nP~w~e~~~f~~~~~-~~~L~i~v~d~~~~~~d~ 243 (276)
+...|.|+|++|++|+..+ .+||||++.+++. ..+|++. .+.||.|||.|.|.+... ...+.|.|||++..++++
T Consensus 2 ~~~~L~V~Vi~A~~L~~~~--~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~ 78 (126)
T cd08400 2 QVRSLQLNVLEAHKLPVKH--VPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS 78 (126)
T ss_pred ceeEEEEEEEEeeCCCCCC--CCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence 3457999999999998764 6899999999874 4688874 589999999999986543 357899999999999999
Q ss_pred eeEEEEEeCccccccccccCCCccCC
Q 023876 244 FMGDAEIDIQPLVTAARACETPISMS 269 (276)
Q Consensus 244 ~lG~~~l~l~~l~~~~~~~~~~~~~~ 269 (276)
+||++.++|..+..+.....|..+..
T Consensus 79 ~iG~v~i~l~~l~~~~~~~~W~~L~~ 104 (126)
T cd08400 79 EIAEVTVQLSKLQNGQETDEWYPLSS 104 (126)
T ss_pred eEEEEEEEHhHccCCCcccEeEEccc
Confidence 99999999999987766555555543
No 74
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.65 E-value=4.2e-16 Score=122.14 Aligned_cols=95 Identities=32% Similarity=0.454 Sum_probs=82.0
Q ss_pred hhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC--C---eeeccccccCCCCCeEeeEEEEEeeC---CCCcEE
Q 023876 160 LVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG--H---QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLK 230 (276)
Q Consensus 160 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~--~---~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~ 230 (276)
...|....+.|.|+|++|++|+..+.. .+||||++++. . .+.+|++++++.||.|+|+|.|.+.. ....|.
T Consensus 7 ~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~ 86 (136)
T cd08404 7 SLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVE 86 (136)
T ss_pred EEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEE
Confidence 345556678899999999999998876 89999999983 2 25689999999999999999999864 345689
Q ss_pred EEEEEcCCCCCCceeEEEEEeCcc
Q 023876 231 VLVYDKDTFTTDDFMGDAEIDIQP 254 (276)
Q Consensus 231 i~v~d~~~~~~d~~lG~~~l~l~~ 254 (276)
|+|||++.++++++||++.+++..
T Consensus 87 ~~v~d~d~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 87 FLVLDSDRVTKNEVIGRLVLGPKA 110 (136)
T ss_pred EEEEECCCCCCCccEEEEEECCcC
Confidence 999999999999999999999988
No 75
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.65 E-value=1.1e-15 Score=119.79 Aligned_cols=102 Identities=25% Similarity=0.382 Sum_probs=86.4
Q ss_pred EEEEEEeeecCCCCCCCCCCcEEEEEEC----CeeeccccccCCCCCeEeeEEEEEeeCC----------------CCcE
Q 023876 170 IKVNVVKGTNLAVRDVMTSDPYVILALG----HQTVKTRVIKSNLNPVWNESLMLSIPEN----------------IPPL 229 (276)
Q Consensus 170 L~V~v~~a~~L~~~~~~~~dpyv~v~l~----~~~~~T~~~~~t~nP~w~e~~~f~~~~~----------------~~~L 229 (276)
|.|+|++|++|+.+..+.+||||+++++ ....+|++++++.||.|+|.|.|.+... ...|
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l 80 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL 80 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence 5799999999988733389999999997 6789999999999999999999998653 4579
Q ss_pred EEEEEEcCCCCCCceeEEEEEeCccccccccccCCCccCCCC
Q 023876 230 KVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSPC 271 (276)
Q Consensus 230 ~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~~~~~ 271 (276)
.|+|||++.++.+++||++.++|.++........|..+....
T Consensus 81 ~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 81 RVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 999999999889999999999999998666666666655444
No 76
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.65 E-value=3.7e-16 Score=122.57 Aligned_cols=110 Identities=16% Similarity=0.195 Sum_probs=88.4
Q ss_pred hhhcccceeeEEEEEEEeeecCCCCCCCCCCcEEEEEECC-----eeeccccccCCCCCeEeeEEEEEeeC---CCCcEE
Q 023876 159 SLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLK 230 (276)
Q Consensus 159 ~~~~~~~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~-----~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~ 230 (276)
....|....+.|.|+|++|++|+..+...+||||++.+.. .+.+|++++++.||+|||.|.|.+.. ....|.
T Consensus 6 ~sl~y~~~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~ 85 (137)
T cd08409 6 ISLTYNPTLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLS 85 (137)
T ss_pred EEEEECCCCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEE
Confidence 3456677788999999999999988844899999999832 35689999999999999999999864 346799
Q ss_pred EEEEEcCCCCCCceeEEEEEeCccccccccccCCCccC
Q 023876 231 VLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISM 268 (276)
Q Consensus 231 i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~~ 268 (276)
|+||+.+..+++++||++.+.......+.....|.+++
T Consensus 86 ~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~ 123 (137)
T cd08409 86 LSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDML 123 (137)
T ss_pred EEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHH
Confidence 99999999999999999999876555444444444443
No 77
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.65 E-value=5.2e-16 Score=121.60 Aligned_cols=96 Identities=34% Similarity=0.500 Sum_probs=82.7
Q ss_pred hhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE--CC---eeeccccccCCCCCeEeeEEEEEeeC---CCCcEE
Q 023876 160 LVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL--GH---QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLK 230 (276)
Q Consensus 160 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l--~~---~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~ 230 (276)
...|....+.|.|+|++|++|+..+.. .+||||++.+ +. .+.+|++++++.||+|||.|.|.+.. ....|.
T Consensus 7 sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~ 86 (136)
T cd08405 7 SLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLI 86 (136)
T ss_pred EEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEE
Confidence 345666778999999999999988766 8999999988 22 35689999999999999999999853 245799
Q ss_pred EEEEEcCCCCCCceeEEEEEeCccc
Q 023876 231 VLVYDKDTFTTDDFMGDAEIDIQPL 255 (276)
Q Consensus 231 i~v~d~~~~~~d~~lG~~~l~l~~l 255 (276)
|+|||++.++++++||++.+++.+.
T Consensus 87 ~~v~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 87 ITVMDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred EEEEECCCCCCCcEeEEEEECCccC
Confidence 9999999999999999999999876
No 78
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.65 E-value=2.1e-15 Score=116.26 Aligned_cols=89 Identities=33% Similarity=0.527 Sum_probs=78.8
Q ss_pred EEEEEEEeeecCCCCCCC-CCCcEEEEEECCee--eccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCCCCCCce
Q 023876 169 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQT--VKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDF 244 (276)
Q Consensus 169 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~--~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~~~~d~~ 244 (276)
+|.|.|++|++|+..+.. .+||||++.++++. .+|.++++++||+|||.|.|.+.. ....|.|+|||++.++.|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 378999999999998877 89999999998765 578888899999999999998754 45689999999999999999
Q ss_pred eEEEEEeCccccc
Q 023876 245 MGDAEIDIQPLVT 257 (276)
Q Consensus 245 lG~~~l~l~~l~~ 257 (276)
||++.++|.+..-
T Consensus 81 iG~~~i~l~~~~~ 93 (124)
T cd04037 81 IGETVIDLEDRFF 93 (124)
T ss_pred eEEEEEeeccccc
Confidence 9999999998764
No 79
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.64 E-value=9.6e-16 Score=120.28 Aligned_cols=98 Identities=20% Similarity=0.336 Sum_probs=84.7
Q ss_pred hhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC------eeeccccccCCCCCeEeeEEEEEeeC---CCCc
Q 023876 159 SLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH------QTVKTRVIKSNLNPVWNESLMLSIPE---NIPP 228 (276)
Q Consensus 159 ~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~------~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~ 228 (276)
.+..|....+.|.|+|++|++|+..+.. .+||||++.+.. .+.+|++++++.||+|||+|.|.+.. ....
T Consensus 6 ~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~ 85 (138)
T cd08408 6 LGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVT 85 (138)
T ss_pred EEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccE
Confidence 3456778889999999999999998877 899999999831 25699999999999999999999865 4468
Q ss_pred EEEEEEEcCCCCCCceeEEEEEeCcccc
Q 023876 229 LKVLVYDKDTFTTDDFMGDAEIDIQPLV 256 (276)
Q Consensus 229 L~i~v~d~~~~~~d~~lG~~~l~l~~l~ 256 (276)
|.|+|||.+.++++++||++.+++....
T Consensus 86 L~~~V~~~~~~~~~~~iG~v~l~~~~~~ 113 (138)
T cd08408 86 LMFSVYNKRKMKRKEMIGWFSLGLNSSG 113 (138)
T ss_pred EEEEEEECCCCCCCcEEEEEEECCcCCC
Confidence 9999999999999999999999887543
No 80
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.64 E-value=1.8e-15 Score=116.50 Aligned_cols=89 Identities=27% Similarity=0.551 Sum_probs=79.9
Q ss_pred EEEEEEeeecCCCCCCC-CCCcEEEEEEC-CeeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCC--Ccee
Q 023876 170 IKVNVVKGTNLAVRDVM-TSDPYVILALG-HQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTT--DDFM 245 (276)
Q Consensus 170 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~-~~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~--d~~l 245 (276)
|.|+|++|++|+..+.. .+||||++.++ .+.++|+++++++||.|||.|.|.+.. ...|.|+|||++.++. +++|
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~l 80 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFL 80 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceE
Confidence 78999999999988876 89999999995 678899999999999999999999976 6789999999998875 5799
Q ss_pred EEEEEeCccccccc
Q 023876 246 GDAEIDIQPLVTAA 259 (276)
Q Consensus 246 G~~~l~l~~l~~~~ 259 (276)
|++.+++.++....
T Consensus 81 G~~~i~l~~l~~~~ 94 (123)
T cd08382 81 GCVRIRANAVLPLK 94 (123)
T ss_pred eEEEEEHHHccccC
Confidence 99999999987554
No 81
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.64 E-value=1.5e-15 Score=118.78 Aligned_cols=95 Identities=26% Similarity=0.506 Sum_probs=80.7
Q ss_pred hhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE--CC---eeeccccccCCCCCeEeeEEEEEeeC---CCCcE
Q 023876 159 SLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL--GH---QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPL 229 (276)
Q Consensus 159 ~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l--~~---~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L 229 (276)
....|....+.|.|+|++|++|+..+.. .+||||++.+ +. .+.+|++++++.||.|||+|.|.+.. ....|
T Consensus 5 ~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l 84 (135)
T cd08410 5 LSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSL 84 (135)
T ss_pred EEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEE
Confidence 3456777789999999999999998876 8999999997 22 35789999999999999999999854 23469
Q ss_pred EEEEEEcCCCCCCceeEEEEEeCc
Q 023876 230 KVLVYDKDTFTTDDFMGDAEIDIQ 253 (276)
Q Consensus 230 ~i~v~d~~~~~~d~~lG~~~l~l~ 253 (276)
.|+|||++..+++++||++.+...
T Consensus 85 ~~~V~d~d~~~~~~~iG~~~l~~~ 108 (135)
T cd08410 85 VFTVYGHNVKSSNDFIGRIVIGQY 108 (135)
T ss_pred EEEEEeCCCCCCCcEEEEEEEcCc
Confidence 999999999999999999886653
No 82
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.63 E-value=1.6e-15 Score=116.99 Aligned_cols=93 Identities=19% Similarity=0.414 Sum_probs=82.5
Q ss_pred EEEEEEEeeecCCCCCCC-CCCcEEEEEECC-eeecccccc-CCCCCeEeeEEEEEeeCC-----CCcEEEEEEEcCCCC
Q 023876 169 LIKVNVVKGTNLAVRDVM-TSDPYVILALGH-QTVKTRVIK-SNLNPVWNESLMLSIPEN-----IPPLKVLVYDKDTFT 240 (276)
Q Consensus 169 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-~~~~T~~~~-~t~nP~w~e~~~f~~~~~-----~~~L~i~v~d~~~~~ 240 (276)
.|.|+|++|++|+..+.. .+||||++.++. ++.+|++.+ .+.||.|||.|.|.+... ...|.|+|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 378999999999988866 899999999987 888999975 589999999999999764 578999999999988
Q ss_pred CCceeEEEEEeCccccccccc
Q 023876 241 TDDFMGDAEIDIQPLVTAARA 261 (276)
Q Consensus 241 ~d~~lG~~~l~l~~l~~~~~~ 261 (276)
.+++||++.++|.++......
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~ 101 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASP 101 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCC
Confidence 999999999999999876653
No 83
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.63 E-value=2.8e-15 Score=113.26 Aligned_cols=90 Identities=24% Similarity=0.389 Sum_probs=79.3
Q ss_pred eEEEEEEEeeecCCCCCCCCCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeCC-----CCcEEEEEEEcCCCCCC
Q 023876 168 GLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPEN-----IPPLKVLVYDKDTFTTD 242 (276)
Q Consensus 168 g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~~-----~~~L~i~v~d~~~~~~d 242 (276)
-.|.|+|++|++|+ ...+||||++++++++.+|++++++.||.|||.|.|.+... ...|.|+|||++.++++
T Consensus 4 ~~l~V~v~~a~~L~---~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~ 80 (111)
T cd04011 4 FQVRVRVIEARQLV---GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSD 80 (111)
T ss_pred EEEEEEEEEcccCC---CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccC
Confidence 46899999999998 23789999999999999999999999999999999987432 35799999999999899
Q ss_pred ceeEEEEEeCcccccccc
Q 023876 243 DFMGDAEIDIQPLVTAAR 260 (276)
Q Consensus 243 ~~lG~~~l~l~~l~~~~~ 260 (276)
++||++.++|+++.....
T Consensus 81 ~~iG~~~i~l~~v~~~~~ 98 (111)
T cd04011 81 TLIGSFKLDVGTVYDQPD 98 (111)
T ss_pred CccEEEEECCccccCCCC
Confidence 999999999999976533
No 84
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.63 E-value=3.8e-15 Score=116.08 Aligned_cols=92 Identities=25% Similarity=0.479 Sum_probs=81.6
Q ss_pred eeeEEEEEEEeeecCCCCCC-----------CCCCcEEEEEECCee-eccccccCCCCCeEeeEEEEEeeCCCCcEEEEE
Q 023876 166 FVGLIKVNVVKGTNLAVRDV-----------MTSDPYVILALGHQT-VKTRVIKSNLNPVWNESLMLSIPENIPPLKVLV 233 (276)
Q Consensus 166 ~~g~L~V~v~~a~~L~~~~~-----------~~~dpyv~v~l~~~~-~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v 233 (276)
..|.|.|+|++|++|...+. ..+||||++.++++. .+|++++++.||.|||.|.|.+.. ...|.|.|
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-~~~l~~~v 80 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-GRNLELTV 80 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-CCEEEEEE
Confidence 35889999999999988775 268999999998765 589999999999999999999974 57899999
Q ss_pred EEcCCCCCCceeEEEEEeCcccccc
Q 023876 234 YDKDTFTTDDFMGDAEIDIQPLVTA 258 (276)
Q Consensus 234 ~d~~~~~~d~~lG~~~l~l~~l~~~ 258 (276)
||++.++.+++||++.++|.++..+
T Consensus 81 ~d~~~~~~~~~iG~~~i~l~~l~~~ 105 (132)
T cd04014 81 FHDAAIGPDDFVANCTISFEDLIQR 105 (132)
T ss_pred EeCCCCCCCceEEEEEEEhHHhccc
Confidence 9999988999999999999999873
No 85
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.62 E-value=2.4e-15 Score=117.47 Aligned_cols=94 Identities=29% Similarity=0.489 Sum_probs=81.2
Q ss_pred hhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC--C---eeeccccccCCCCCeEeeEEEEEeeC---CCCcEE
Q 023876 160 LVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG--H---QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLK 230 (276)
Q Consensus 160 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~--~---~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~ 230 (276)
...|....+.|.|+|++|++|+..+.. .+||||++++. + .+.+|++++++.||.|||.|.|.+.. ....|.
T Consensus 6 ~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~ 85 (134)
T cd08403 6 SLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLI 85 (134)
T ss_pred EEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEE
Confidence 345667789999999999999998876 89999999983 1 35689999999999999999999854 234699
Q ss_pred EEEEEcCCCCCCceeEEEEEeCc
Q 023876 231 VLVYDKDTFTTDDFMGDAEIDIQ 253 (276)
Q Consensus 231 i~v~d~~~~~~d~~lG~~~l~l~ 253 (276)
|+|||++.++.+++||++.+++.
T Consensus 86 ~~v~d~~~~~~~~~IG~~~l~~~ 108 (134)
T cd08403 86 IAVVDYDRVGHNELIGVCRVGPN 108 (134)
T ss_pred EEEEECCCCCCCceeEEEEECCC
Confidence 99999999999999999999987
No 86
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.62 E-value=4.7e-15 Score=114.79 Aligned_cols=88 Identities=38% Similarity=0.650 Sum_probs=79.0
Q ss_pred EEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCC--------
Q 023876 169 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTF-------- 239 (276)
Q Consensus 169 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~-------- 239 (276)
.|.|+|++|++|+..+.. .+||||++.++....+|+++++++||.|||.|.|.+......|.|+|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~ 81 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK 81 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence 589999999999998876 89999999999889999999999999999999998866567899999999852
Q ss_pred ---CCCceeEEEEEeCcccc
Q 023876 240 ---TTDDFMGDAEIDIQPLV 256 (276)
Q Consensus 240 ---~~d~~lG~~~l~l~~l~ 256 (276)
+.+++||++.+++.++.
T Consensus 82 ~~~~~~~~iG~~~i~l~~~~ 101 (127)
T cd04027 82 FTRESDDFLGQTIIEVRTLS 101 (127)
T ss_pred ccccCCCcceEEEEEhHHcc
Confidence 46899999999998875
No 87
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.61 E-value=6.6e-15 Score=111.83 Aligned_cols=98 Identities=39% Similarity=0.533 Sum_probs=83.8
Q ss_pred EEEEEEeeecCCCCCCC-CCCcEEEEEECC-eeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCCCCCCceeE
Q 023876 170 IKVNVVKGTNLAVRDVM-TSDPYVILALGH-QTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFMG 246 (276)
Q Consensus 170 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~~~~d~~lG 246 (276)
|.|+|++|++|+..+.. .+||||++.+.+ ..++|+++.++.+|.|||.|.|.+.. ....|.|+|||++..+++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 57899999999988866 899999999964 45799999999999999999999876 4578999999999999999999
Q ss_pred EEEEeCccccccccccCCCcc
Q 023876 247 DAEIDIQPLVTAARACETPIS 267 (276)
Q Consensus 247 ~~~l~l~~l~~~~~~~~~~~~ 267 (276)
++.+++.++..+.....+..+
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L 101 (115)
T cd04040 81 SAYIDLSDLEPEETTELTLPL 101 (115)
T ss_pred EEEEEHHHcCCCCcEEEEEEC
Confidence 999999998876555444433
No 88
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.60 E-value=6.4e-15 Score=113.35 Aligned_cols=101 Identities=27% Similarity=0.442 Sum_probs=84.7
Q ss_pred hhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC-----CeeeccccccCCCCCeEeeEEEEEe-eC---CCCcE
Q 023876 160 LVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSI-PE---NIPPL 229 (276)
Q Consensus 160 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~-----~~~~~T~~~~~t~nP~w~e~~~f~~-~~---~~~~L 229 (276)
...|....+.|.|+|++|++|+..+.. .+||||++.+. ....+|++++++.||.|||.|.|.. .. ....|
T Consensus 7 ~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l 86 (123)
T cd04035 7 TLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTL 86 (123)
T ss_pred EEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEE
Confidence 345667778999999999999988876 89999999872 2468999999999999999999963 32 24689
Q ss_pred EEEEEEcCCCCCCceeEEEEEeCccccccccc
Q 023876 230 KVLVYDKDTFTTDDFMGDAEIDIQPLVTAARA 261 (276)
Q Consensus 230 ~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~ 261 (276)
.|+|||++.. .+++||++.++|+++..+...
T Consensus 87 ~~~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~ 117 (123)
T cd04035 87 RLLVLDEDRF-GNDFLGETRIPLKKLKPNQTK 117 (123)
T ss_pred EEEEEEcCCc-CCeeEEEEEEEcccCCCCcce
Confidence 9999999988 899999999999999865443
No 89
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.59 E-value=8.2e-15 Score=112.31 Aligned_cols=95 Identities=29% Similarity=0.447 Sum_probs=78.9
Q ss_pred EEEeeecCCCCCCC-CCCcEEEEEECCe-------eeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCC----C
Q 023876 173 NVVKGTNLAVRDVM-TSDPYVILALGHQ-------TVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDT----F 239 (276)
Q Consensus 173 ~v~~a~~L~~~~~~-~~dpyv~v~l~~~-------~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~----~ 239 (276)
-.++|++|+..+.. .+||||++++... ..+|+++++++||+|+|.|.|.+.. ....|.|+|||++. .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 35789999988876 8999999999554 4899999999999999999998643 45689999999997 8
Q ss_pred CCCceeEEEEEeCccccccccccCCCcc
Q 023876 240 TTDDFMGDAEIDIQPLVTAARACETPIS 267 (276)
Q Consensus 240 ~~d~~lG~~~l~l~~l~~~~~~~~~~~~ 267 (276)
+.+++||++.+++.+|..+.....+..+
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l 112 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPGQKLTLPL 112 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCCcEEEEEc
Confidence 8999999999999999866544444433
No 90
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.59 E-value=1.7e-14 Score=111.44 Aligned_cols=89 Identities=30% Similarity=0.517 Sum_probs=78.8
Q ss_pred EEEEEEEeeecCCCCCCC-CCCcEEEEEECC---eeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCCCCCCc
Q 023876 169 LIKVNVVKGTNLAVRDVM-TSDPYVILALGH---QTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDD 243 (276)
Q Consensus 169 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~---~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~~~~d~ 243 (276)
.|.|+|++|++|+..+.. .+||||++.+.. ...+|+++++++||.|||.|.|.+.. ....|.|+|||++..+.++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 588999999999998877 899999998753 36799999999999999999999876 4568999999999988999
Q ss_pred eeEEEEEeCccccc
Q 023876 244 FMGDAEIDIQPLVT 257 (276)
Q Consensus 244 ~lG~~~l~l~~l~~ 257 (276)
+||++.++|+++..
T Consensus 82 ~iG~~~i~l~~~~~ 95 (126)
T cd04043 82 LCGRASLKLDPKRF 95 (126)
T ss_pred eEEEEEEecCHHHc
Confidence 99999999987653
No 91
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.59 E-value=1.1e-15 Score=135.53 Aligned_cols=92 Identities=36% Similarity=0.567 Sum_probs=83.3
Q ss_pred eEEEEEEEeeecCCCCCCC-CCCcEEEEEE-----CCeeeccccccCCCCCeEeeEEEEEeeC--CCCcEEEEEEEcCCC
Q 023876 168 GLIKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVLVYDKDTF 239 (276)
Q Consensus 168 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l-----~~~~~~T~~~~~t~nP~w~e~~~f~~~~--~~~~L~i~v~d~~~~ 239 (276)
..|.|.|.+|++|.++|.+ .+||||++.+ +..+++|++++.++||+|||+|.|.+.. ....|.|+|||||+.
T Consensus 180 ~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT 259 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT 259 (683)
T ss_pred ceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccccc
Confidence 4688999999999999988 9999999998 3457899999999999999999999965 457899999999999
Q ss_pred CCCceeEEEEEeCccccccc
Q 023876 240 TTDDFMGDAEIDIQPLVTAA 259 (276)
Q Consensus 240 ~~d~~lG~~~l~l~~l~~~~ 259 (276)
+++||+|..++.+++|+++.
T Consensus 260 sRNDFMGslSFgisEl~K~p 279 (683)
T KOG0696|consen 260 SRNDFMGSLSFGISELQKAP 279 (683)
T ss_pred ccccccceecccHHHHhhcc
Confidence 99999999999999998654
No 92
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.59 E-value=1.9e-14 Score=114.40 Aligned_cols=99 Identities=31% Similarity=0.423 Sum_probs=79.3
Q ss_pred EEEEEEeeec--CCCCCCC-CCCcEEEEEE-----CCeeeccccccCCCCCeEeeEEEEEeeCC---------CCcEEEE
Q 023876 170 IKVNVVKGTN--LAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPEN---------IPPLKVL 232 (276)
Q Consensus 170 L~V~v~~a~~--L~~~~~~-~~dpyv~v~l-----~~~~~~T~~~~~t~nP~w~e~~~f~~~~~---------~~~L~i~ 232 (276)
..++|..|++ |+..+.. ..||||++++ +.++.+|+++++|+||+|||.|.|.+... ...|+|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 3455666666 6666655 7899999987 34688999999999999999999998643 3579999
Q ss_pred EEEcCCC-CCCceeEEEEEeCccccccccccCCCccC
Q 023876 233 VYDKDTF-TTDDFMGDAEIDIQPLVTAARACETPISM 268 (276)
Q Consensus 233 v~d~~~~-~~d~~lG~~~l~l~~l~~~~~~~~~~~~~ 268 (276)
|||++.+ .+|++||++.++|+.+......+.+.+++
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~ 120 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLM 120 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhh
Confidence 9999986 57999999999999998776666555544
No 93
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.58 E-value=3.8e-15 Score=116.14 Aligned_cols=106 Identities=27% Similarity=0.380 Sum_probs=86.5
Q ss_pred hcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eeeccccccCCCCCeEeeEEEEEeeCC---CCcEEE
Q 023876 161 VAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPEN---IPPLKV 231 (276)
Q Consensus 161 ~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~~T~~~~~t~nP~w~e~~~f~~~~~---~~~L~i 231 (276)
..|....+.|.|+|++|++|+..+.. .+||||++++.. ...+|++++++.||.|||+|.|.+... ...|.|
T Consensus 7 l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~ 86 (134)
T cd00276 7 LSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVI 86 (134)
T ss_pred EEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEE
Confidence 34555567899999999999988766 899999999843 256999999999999999999998653 468999
Q ss_pred EEEEcCCCCCCceeEEEEEeCccccccccccCCCccC
Q 023876 232 LVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISM 268 (276)
Q Consensus 232 ~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~~ 268 (276)
+|||++..+.+++||++.+++++ .+.....|..++
T Consensus 87 ~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~ 121 (134)
T cd00276 87 TVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEML 121 (134)
T ss_pred EEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHH
Confidence 99999998899999999999998 333444444443
No 94
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.58 E-value=1.5e-14 Score=114.97 Aligned_cols=90 Identities=32% Similarity=0.557 Sum_probs=78.8
Q ss_pred cceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----------------------------eeeccccccCCCCCe
Q 023876 164 VEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----------------------------QTVKTRVIKSNLNPV 213 (276)
Q Consensus 164 ~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----------------------------~~~~T~~~~~t~nP~ 213 (276)
....+.|.|+|++|++|+..+.. .+||||++.++. ...+|.++++++||.
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~ 103 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPV 103 (153)
T ss_pred CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCc
Confidence 45678999999999999999876 899999999853 236899999999999
Q ss_pred EeeEEEEEeeC-CCCcEEEEEEEcCCCCCCceeEEEEEeCccccc
Q 023876 214 WNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVT 257 (276)
Q Consensus 214 w~e~~~f~~~~-~~~~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~ 257 (276)
|||.|.|.+.. ....|.|+|||++ +++||++.++++++..
T Consensus 104 WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~ 144 (153)
T cd08676 104 WNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS 144 (153)
T ss_pred cccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC
Confidence 99999999865 4568999999987 8999999999999883
No 95
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.57 E-value=2.7e-14 Score=111.73 Aligned_cols=87 Identities=28% Similarity=0.537 Sum_probs=75.4
Q ss_pred EEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeC----------CCCcEEEEEEEcC
Q 023876 169 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE----------NIPPLKVLVYDKD 237 (276)
Q Consensus 169 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~----------~~~~L~i~v~d~~ 237 (276)
.|.|.|++|++|+..+.. .+||||++.++.++.+|++++++.||.|||.|.|.+.. ....|.|+|||++
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 488999999999998877 89999999999999999999999999999999997532 1246899999999
Q ss_pred CCCCCceeEEEEE-eCccc
Q 023876 238 TFTTDDFMGDAEI-DIQPL 255 (276)
Q Consensus 238 ~~~~d~~lG~~~l-~l~~l 255 (276)
..++|++||++.+ ++..+
T Consensus 82 ~~~~d~~iG~~~i~~~~~~ 100 (135)
T cd04017 82 SVGKDEFLGRSVAKPLVKL 100 (135)
T ss_pred CCCCCccceEEEeeeeeec
Confidence 9999999999986 44333
No 96
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.57 E-value=2.2e-14 Score=110.99 Aligned_cols=90 Identities=28% Similarity=0.375 Sum_probs=78.5
Q ss_pred EEeeecCCCCCCCCCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeC---CCCcEEEEEEEcCCCCCCceeEEEEE
Q 023876 174 VVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTFTTDDFMGDAEI 250 (276)
Q Consensus 174 v~~a~~L~~~~~~~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~i~v~d~~~~~~d~~lG~~~l 250 (276)
|++|++|+. ..+.+||||++.++..+.+|++++++.||+|||.|.|.+.. ....|.|+|||++..+++++||++.+
T Consensus 2 vi~a~~L~~-~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~ 80 (127)
T cd08373 2 VVSLKNLPG-LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATV 80 (127)
T ss_pred eEEeeCCcc-cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEE
Confidence 688999988 33489999999999999999999999999999999999864 35789999999999999999999999
Q ss_pred eCccccccccccCC
Q 023876 251 DIQPLVTAARACET 264 (276)
Q Consensus 251 ~l~~l~~~~~~~~~ 264 (276)
+|+++..+.....+
T Consensus 81 ~l~~l~~~~~~~~~ 94 (127)
T cd08373 81 SLQDLVSEGLLEVT 94 (127)
T ss_pred EhhHcccCCceEEE
Confidence 99998865554433
No 97
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.57 E-value=1.5e-14 Score=112.46 Aligned_cols=101 Identities=33% Similarity=0.452 Sum_probs=85.4
Q ss_pred eEEEEEEEeeecCCCCCCC-CCCcEEEEEEC-----CeeeccccccCCCCCeEeeEEEEEeeC--CCCcEEEEEEEcCCC
Q 023876 168 GLIKVNVVKGTNLAVRDVM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVLVYDKDTF 239 (276)
Q Consensus 168 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~-----~~~~~T~~~~~t~nP~w~e~~~f~~~~--~~~~L~i~v~d~~~~ 239 (276)
+.|.|+|++|++|+..+.. ..||||.+.+. ....+|++++++.+|.|||+|.|.+.. ....|.|+|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 7899999999999987766 89999999985 357899999999999999999999865 346799999999998
Q ss_pred CCCceeEEEEEeCccccccccccCCCccCC
Q 023876 240 TTDDFMGDAEIDIQPLVTAARACETPISMS 269 (276)
Q Consensus 240 ~~d~~lG~~~l~l~~l~~~~~~~~~~~~~~ 269 (276)
+.+++||++.++|+++... ....|..+.+
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLN 121 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence 8999999999999999854 3444544443
No 98
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.53 E-value=6.2e-14 Score=105.74 Aligned_cols=79 Identities=28% Similarity=0.532 Sum_probs=68.0
Q ss_pred EEEEEEeeecCCCCCCCCCCcEEEEEECC-----eeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEc-------C
Q 023876 170 IKVNVVKGTNLAVRDVMTSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDK-------D 237 (276)
Q Consensus 170 L~V~v~~a~~L~~~~~~~~dpyv~v~l~~-----~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~-------~ 237 (276)
|.|+|.+|++|.. .+||||++.+.. ...+|+++++|+||+|||.|.|.+.. ...|.+.|||+ |
T Consensus 1 L~V~V~~A~~L~~----~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~d 75 (118)
T cd08686 1 LNVIVHSAQGFKQ----SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKLD 75 (118)
T ss_pred CEEEEEeCCCCCC----CCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEccccccccc
Confidence 5799999999963 589999998842 46899999999999999999999974 67999999998 4
Q ss_pred CCCCCceeEEEEEeCc
Q 023876 238 TFTTDDFMGDAEIDIQ 253 (276)
Q Consensus 238 ~~~~d~~lG~~~l~l~ 253 (276)
..+.|+++|.+.+.|+
T Consensus 76 ~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 76 GEGTDAIMGKGQIQLD 91 (118)
T ss_pred ccCcccEEEEEEEEEC
Confidence 6688999988887775
No 99
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.53 E-value=8.4e-14 Score=107.47 Aligned_cols=90 Identities=24% Similarity=0.448 Sum_probs=77.6
Q ss_pred EEEEEEEeeecCCCCCCCCCCcEEEEEECCe-eeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCceeEE
Q 023876 169 LIKVNVVKGTNLAVRDVMTSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGD 247 (276)
Q Consensus 169 ~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~-~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~lG~ 247 (276)
.|.|+|++|+.+.......+||||+++++++ ..+|++++++.||.|||.|.|.+.. ...|.|+|||++..+.+++||+
T Consensus 3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~iG~ 81 (125)
T cd04021 3 QLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLLGE 81 (125)
T ss_pred eEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEEEE
Confidence 5899999998444333338999999999877 8899999999999999999999864 4689999999999999999999
Q ss_pred EEEeCccccccc
Q 023876 248 AEIDIQPLVTAA 259 (276)
Q Consensus 248 ~~l~l~~l~~~~ 259 (276)
+.++|.++....
T Consensus 82 ~~i~l~~l~~~~ 93 (125)
T cd04021 82 ASLDLSDILKNH 93 (125)
T ss_pred EEEEHHHhHhhc
Confidence 999999988643
No 100
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=5.2e-14 Score=129.38 Aligned_cols=116 Identities=28% Similarity=0.376 Sum_probs=98.8
Q ss_pred ccchhhhhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC---CeeeccccccCCCCCeEeeEEEEEeeC---
Q 023876 152 KNSKKANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE--- 224 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~---~~~~~T~~~~~t~nP~w~e~~~f~~~~--- 224 (276)
...+.+++...|+.....|.|+|++|++|+..+.. .+||||++++. ..+.+|++.++++||+|||+|.|.+..
T Consensus 151 ~~~G~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l 230 (421)
T KOG1028|consen 151 KAVGNLQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEEL 230 (421)
T ss_pred eeeeeEEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHh
Confidence 34556777789999999999999999999999954 79999999993 357899999999999999999999754
Q ss_pred CCCcEEEEEEEcCCCCCCceeEEEEEeCccccccccccCCCcc
Q 023876 225 NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPIS 267 (276)
Q Consensus 225 ~~~~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~ 267 (276)
....|.++|||.|++++|++||++.++|..+........|.++
T Consensus 231 ~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l 273 (421)
T KOG1028|consen 231 SNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDL 273 (421)
T ss_pred ccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeecc
Confidence 5678999999999999999999999999888766654444443
No 101
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.50 E-value=2.3e-13 Score=106.40 Aligned_cols=91 Identities=24% Similarity=0.454 Sum_probs=75.9
Q ss_pred EEEEEEEeeecCCCCCCC-CCCcEEEEEEC-------------CeeeccccccCCCCCeE-eeEEEEEeeCCCCcEEEEE
Q 023876 169 LIKVNVVKGTNLAVRDVM-TSDPYVILALG-------------HQTVKTRVIKSNLNPVW-NESLMLSIPENIPPLKVLV 233 (276)
Q Consensus 169 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~-------------~~~~~T~~~~~t~nP~w-~e~~~f~~~~~~~~L~i~v 233 (276)
...|++++|++|+ ++.. .+||||++.+. .+.++|+++++++||+| ||.|.|.+.. .+.|.|+|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V 79 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEV 79 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEE
Confidence 4578999999998 5555 99999999983 24689999999999999 9999999864 46899999
Q ss_pred EEcCCCCC---CceeEEEEEeCccccccccc
Q 023876 234 YDKDTFTT---DDFMGDAEIDIQPLVTAARA 261 (276)
Q Consensus 234 ~d~~~~~~---d~~lG~~~l~l~~l~~~~~~ 261 (276)
||++..++ +++||++.++|.++......
T Consensus 80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~ 110 (137)
T cd08691 80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHAI 110 (137)
T ss_pred EecCCCCCccCCceEEEEEEEHHHhcccccC
Confidence 99765443 79999999999999866443
No 102
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.50 E-value=1.4e-13 Score=103.79 Aligned_cols=86 Identities=29% Similarity=0.544 Sum_probs=72.6
Q ss_pred EEEEEeeecCCCCCCC-CCCcEEEEEECC------eeeccccccCCCCCeEeeEEEEEeeC-----CCCcEEEEEEEcCC
Q 023876 171 KVNVVKGTNLAVRDVM-TSDPYVILALGH------QTVKTRVIKSNLNPVWNESLMLSIPE-----NIPPLKVLVYDKDT 238 (276)
Q Consensus 171 ~V~v~~a~~L~~~~~~-~~dpyv~v~l~~------~~~~T~~~~~t~nP~w~e~~~f~~~~-----~~~~L~i~v~d~~~ 238 (276)
.+-.++|++|+..+.. .+||||++++.. ..++|+++++++||.|| .|.|.+.. ....|.|+|||++.
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 3456789999998877 899999998843 25899999999999999 57776532 25689999999999
Q ss_pred CCCCceeEEEEEeCccccc
Q 023876 239 FTTDDFMGDAEIDIQPLVT 257 (276)
Q Consensus 239 ~~~d~~lG~~~l~l~~l~~ 257 (276)
+++|++||++.+++++|..
T Consensus 82 ~~~d~~iG~~~~~l~~l~~ 100 (110)
T cd04047 82 SGKHDLIGEFETTLDELLK 100 (110)
T ss_pred CCCCcEEEEEEEEHHHHhc
Confidence 9999999999999999973
No 103
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.45 E-value=8.1e-13 Score=102.09 Aligned_cols=91 Identities=32% Similarity=0.595 Sum_probs=77.2
Q ss_pred EEEEEEEeeecCCCCC--CC-CCCcEEEEEE------CCeeeccccccCCC-CCeEeeEEEEEeeCC-CCcEEEEEEEcC
Q 023876 169 LIKVNVVKGTNLAVRD--VM-TSDPYVILAL------GHQTVKTRVIKSNL-NPVWNESLMLSIPEN-IPPLKVLVYDKD 237 (276)
Q Consensus 169 ~L~V~v~~a~~L~~~~--~~-~~dpyv~v~l------~~~~~~T~~~~~t~-nP~w~e~~~f~~~~~-~~~L~i~v~d~~ 237 (276)
.|.|+|++|++|+..+ .. ..||||++++ +....+|+++.++. ||.|||+|.|.+... ...|.|+|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999887 33 8899999999 34568999988775 999999999998753 357999999999
Q ss_pred CCCCCceeEEEEEeCcccccccc
Q 023876 238 TFTTDDFMGDAEIDIQPLVTAAR 260 (276)
Q Consensus 238 ~~~~d~~lG~~~l~l~~l~~~~~ 260 (276)
.. ++++||++.++|+++..+..
T Consensus 83 ~~-~~~~iG~~~~~l~~l~~g~~ 104 (128)
T cd00275 83 SG-DDDFLGQACLPLDSLRQGYR 104 (128)
T ss_pred CC-CCcEeEEEEEEhHHhcCceE
Confidence 88 89999999999999965543
No 104
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.45 E-value=7.4e-13 Score=104.24 Aligned_cols=102 Identities=14% Similarity=0.185 Sum_probs=83.8
Q ss_pred eeeEEEEEEEeeecCCCCCCCCCCcEEEEEECCee-eccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCC-C---C
Q 023876 166 FVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQT-VKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDT-F---T 240 (276)
Q Consensus 166 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~-~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~-~---~ 240 (276)
....|.|.|++|++|+.++ +|||.+.+++.. .+|+++.++.||.|+|.|.|........|.|.||..+. . .
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~ 84 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKK----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKD 84 (146)
T ss_pred EEEEEEEEEEEccCCCCcC----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccccc
Confidence 3457999999999999866 899999999887 49999999999999999999865555779999986543 2 2
Q ss_pred CCceeEEEEEeCccccccccccCCCccCCCC
Q 023876 241 TDDFMGDAEIDIQPLVTAARACETPISMSPC 271 (276)
Q Consensus 241 ~d~~lG~~~l~l~~l~~~~~~~~~~~~~~~~ 271 (276)
++++||.+.|++.++..+...+.|..+++..
T Consensus 85 ~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~ 115 (146)
T cd04013 85 KSQLIGTVNIPVTDVSSRQFVEKWYPVSTPK 115 (146)
T ss_pred CCcEEEEEEEEHHHhcCCCcccEEEEeecCC
Confidence 5789999999999999776666666655433
No 105
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.44 E-value=2.4e-13 Score=141.62 Aligned_cols=106 Identities=20% Similarity=0.351 Sum_probs=91.6
Q ss_pred cccceeeEEEEEEEeeecCCCCCCCCCCcEEEEEECCe-eeccccccCCCCCeEeeEEEEEeeC--CCCcEEEEEEEcCC
Q 023876 162 AMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVLVYDKDT 238 (276)
Q Consensus 162 ~~~~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~-~~~T~~~~~t~nP~w~e~~~f~~~~--~~~~L~i~v~d~~~ 238 (276)
-+....|.|.|+|++|.+|. .++..+||||++.+|++ +.+|++++++.||+|||.|.|.+.. ...+|+|+|||+|.
T Consensus 1974 ~~~~~~G~L~V~V~~a~nl~-~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~ 2052 (2102)
T PLN03200 1974 LLQCLPGSLTVTIKRGNNLK-QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT 2052 (2102)
T ss_pred HHhhCCcceEEEEeeccccc-cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc
Confidence 34567899999999999998 55569999999999976 7899999999999999999987765 44789999999999
Q ss_pred CCCCceeEEEEEeCccccccccccCCCccCC
Q 023876 239 FTTDDFMGDAEIDIQPLVTAARACETPISMS 269 (276)
Q Consensus 239 ~~~d~~lG~~~l~l~~l~~~~~~~~~~~~~~ 269 (276)
+++ +.||.+.++|.++..++...++..+..
T Consensus 2053 f~k-d~~G~~~i~l~~vv~~~~~~~~~~L~~ 2082 (2102)
T PLN03200 2053 FGK-SSLGKVTIQIDRVVMEGTYSGEYSLNP 2082 (2102)
T ss_pred cCC-CCCceEEEEHHHHhcCceeeeeeecCc
Confidence 955 499999999999998877777776664
No 106
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.43 E-value=8.7e-13 Score=93.85 Aligned_cols=80 Identities=33% Similarity=0.651 Sum_probs=70.8
Q ss_pred EEEEEEeeecCCCCCCC-CCCcEEEEEECC---eeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCCCCCCce
Q 023876 170 IKVNVVKGTNLAVRDVM-TSDPYVILALGH---QTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDF 244 (276)
Q Consensus 170 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~---~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~~~~d~~ 244 (276)
|.|+|++|++|+..+.. ..+||+++.++. ...+|++++++.+|.|+|.|.|.+.. ....|.|+|||++..+.+++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 78999999999987766 899999999966 67999999999999999999999644 44569999999999998999
Q ss_pred eEEEE
Q 023876 245 MGDAE 249 (276)
Q Consensus 245 lG~~~ 249 (276)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99873
No 107
>PLN03008 Phospholipase D delta
Probab=99.42 E-value=5.2e-13 Score=128.53 Aligned_cols=83 Identities=29% Similarity=0.520 Sum_probs=72.9
Q ss_pred CCCcEEEEEECCe-eeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCceeEEEEEeCccccccccccCCC
Q 023876 187 TSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETP 265 (276)
Q Consensus 187 ~~dpyv~v~l~~~-~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~ 265 (276)
.+||||+|.++++ ..+|+++++++||+|||+|.|.+......|.|+|||+|.++ +++||++.|+|.++..+.....|.
T Consensus 76 tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl 154 (868)
T PLN03008 76 TSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWF 154 (868)
T ss_pred CCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEE
Confidence 5699999999876 45999999999999999999999876679999999999997 589999999999999888777776
Q ss_pred ccCCC
Q 023876 266 ISMSP 270 (276)
Q Consensus 266 ~~~~~ 270 (276)
+++..
T Consensus 155 ~Ll~~ 159 (868)
T PLN03008 155 PVLGA 159 (868)
T ss_pred Ecccc
Confidence 66543
No 108
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.41 E-value=2.2e-12 Score=98.09 Aligned_cols=94 Identities=22% Similarity=0.379 Sum_probs=72.3
Q ss_pred EEEEEEeeecCCCCCCCCCCcEEEEEECCe-eeccccccCCCCCeEeeEEEEEeeC---CCCcEEEEEEEcCCCCCCcee
Q 023876 170 IKVNVVKGTNLAVRDVMTSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTFTTDDFM 245 (276)
Q Consensus 170 L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~-~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~i~v~d~~~~~~d~~l 245 (276)
|.|+|++|++|+.. +.+||||+++++++ ..+|+++++ .||.|||+|.|.+.. ....|.|.+||.+..+.+.++
T Consensus 2 L~v~vi~a~~l~~~--~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~ 78 (117)
T cd08383 2 LRLRILEAKNLPSK--GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVI 78 (117)
T ss_pred eEEEEEEecCCCcC--CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEE
Confidence 78999999999987 68999999999875 479999988 999999999999876 234678888988877667777
Q ss_pred EEEEEeCccccccccccCCCccC
Q 023876 246 GDAEIDIQPLVTAARACETPISM 268 (276)
Q Consensus 246 G~~~l~l~~l~~~~~~~~~~~~~ 268 (276)
|.+.+.. +..+.....|..+.
T Consensus 79 g~v~l~~--~~~~~~~~~w~~L~ 99 (117)
T cd08383 79 GKVALSK--LDLGQGKDEWFPLT 99 (117)
T ss_pred EEEEecC--cCCCCcceeEEECc
Confidence 7766554 43344444444443
No 109
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.37 E-value=2.5e-12 Score=97.16 Aligned_cols=80 Identities=26% Similarity=0.353 Sum_probs=66.7
Q ss_pred CCCcEEEEEECCe-eeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCCCCCCceeEEEEEeCcccccccc-ccC
Q 023876 187 TSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAAR-ACE 263 (276)
Q Consensus 187 ~~dpyv~v~l~~~-~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~-~~~ 263 (276)
.+||||++.++++ ..+|++++++.||.|||.|.|.+.+ ....|.|.|||++.+ .+++||.+.++|+++..... ..+
T Consensus 12 ~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~~~~ 90 (111)
T cd04052 12 LLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSVGQQ 90 (111)
T ss_pred CCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhccce
Confidence 6899999999875 5799999999999999999999876 356799999999998 89999999999999875433 334
Q ss_pred CCcc
Q 023876 264 TPIS 267 (276)
Q Consensus 264 ~~~~ 267 (276)
|..+
T Consensus 91 w~~L 94 (111)
T cd04052 91 WFPL 94 (111)
T ss_pred eEEC
Confidence 4343
No 110
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.33 E-value=1.9e-11 Score=89.11 Aligned_cols=92 Identities=39% Similarity=0.742 Sum_probs=80.5
Q ss_pred EEEEEEeeecCCCCCCC-CCCcEEEEEECCe---eeccccccCCCCCeEeeEEEEEeeCC-CCcEEEEEEEcCCCCCCce
Q 023876 170 IKVNVVKGTNLAVRDVM-TSDPYVILALGHQ---TVKTRVIKSNLNPVWNESLMLSIPEN-IPPLKVLVYDKDTFTTDDF 244 (276)
Q Consensus 170 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~---~~~T~~~~~t~nP~w~e~~~f~~~~~-~~~L~i~v~d~~~~~~d~~ 244 (276)
|.|.|+.|++|...... ..+|||++.+... ..+|+++.++.+|.||+.|.|.+... ...|.|+|||++..+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 67899999999887764 7899999999764 78999999999999999999999775 7889999999998878899
Q ss_pred eEEEEEeCccccccccc
Q 023876 245 MGDAEIDIQPLVTAARA 261 (276)
Q Consensus 245 lG~~~l~l~~l~~~~~~ 261 (276)
+|.+.+++.++..+...
T Consensus 82 ~G~~~~~l~~~~~~~~~ 98 (101)
T smart00239 82 IGQVTIPLSDLLLGGRH 98 (101)
T ss_pred eEEEEEEHHHcccCccc
Confidence 99999999988765543
No 111
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.31 E-value=2.6e-11 Score=93.85 Aligned_cols=92 Identities=29% Similarity=0.402 Sum_probs=76.8
Q ss_pred EEEEEEeeecCCCCCC--C---CCCcEEEEEEC---CeeeccccccCCCC--CeEeeEEEEEeeC---------------
Q 023876 170 IKVNVVKGTNLAVRDV--M---TSDPYVILALG---HQTVKTRVIKSNLN--PVWNESLMLSIPE--------------- 224 (276)
Q Consensus 170 L~V~v~~a~~L~~~~~--~---~~dpyv~v~l~---~~~~~T~~~~~t~n--P~w~e~~~f~~~~--------------- 224 (276)
|+|.|.+|++++..+. . .+||||++.+. ..+++|.+..+++| |.||++|.|.+..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 7899999999765443 2 48999999984 35789999999999 9999999988644
Q ss_pred ---------CCCcEEEEEEEcCCCCCCceeEEEEEeCccccccccc
Q 023876 225 ---------NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARA 261 (276)
Q Consensus 225 ---------~~~~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~ 261 (276)
....|.|+|||.|.+++|++||++.++|..+......
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~~~ 127 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPAKT 127 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccccc
Confidence 1346899999999999999999999999988866544
No 112
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=1.3e-11 Score=113.56 Aligned_cols=100 Identities=33% Similarity=0.509 Sum_probs=86.8
Q ss_pred hhhhhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE--C---CeeeccccccCCCCCeEeeEEEEEeeC---C
Q 023876 155 KKANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL--G---HQTVKTRVIKSNLNPVWNESLMLSIPE---N 225 (276)
Q Consensus 155 ~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l--~---~~~~~T~~~~~t~nP~w~e~~~f~~~~---~ 225 (276)
+++...+.|+...|.|+|.|++|++|..++.. ..||||++++ + ..+.+|.+.++++||+|||+|.|.++. .
T Consensus 285 gel~~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~ 364 (421)
T KOG1028|consen 285 GELLLSLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLA 364 (421)
T ss_pred ceEEEEEEeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhh
Confidence 35556678999999999999999999999988 8999999998 2 246799999999999999999999875 3
Q ss_pred CCcEEEEEEEcCCCCCCceeEEEEEeCcc
Q 023876 226 IPPLKVLVYDKDTFTTDDFMGDAEIDIQP 254 (276)
Q Consensus 226 ~~~L~i~v~d~~~~~~d~~lG~~~l~l~~ 254 (276)
...|.|+|||++.++.+++||.+.+....
T Consensus 365 ~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 365 EVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred eeEEEEEEEEcccccccceeeEEEecCCC
Confidence 45789999999999999999998887764
No 113
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.24 E-value=8.5e-11 Score=85.25 Aligned_cols=87 Identities=44% Similarity=0.820 Sum_probs=77.7
Q ss_pred EEEEEEeeecCCCCCCC-CCCcEEEEEECC-eeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCCCCCCceeE
Q 023876 170 IKVNVVKGTNLAVRDVM-TSDPYVILALGH-QTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFMG 246 (276)
Q Consensus 170 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~~~~d~~lG 246 (276)
|.|.|++|++|...... ..+|||.+.+.. ...+|.+...+.||.|++.|.|.+.. ....|.|+||+......+.++|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 46899999999875545 899999999987 88899999999999999999999977 6678999999999888889999
Q ss_pred EEEEeCcccc
Q 023876 247 DAEIDIQPLV 256 (276)
Q Consensus 247 ~~~l~l~~l~ 256 (276)
.+.+++.++.
T Consensus 81 ~~~~~l~~l~ 90 (102)
T cd00030 81 EVEIPLSELL 90 (102)
T ss_pred EEEEeHHHhh
Confidence 9999999887
No 114
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=4.2e-11 Score=111.00 Aligned_cols=95 Identities=33% Similarity=0.595 Sum_probs=86.7
Q ss_pred cccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCC--
Q 023876 162 AMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDT-- 238 (276)
Q Consensus 162 ~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~-- 238 (276)
|...+...++++|+.|.+|..+|.. .+||||.+.+++.+.+|+++...+||+|||.|+|++++..+.|++.|||.|.
T Consensus 289 gsskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dl 368 (1283)
T KOG1011|consen 289 GSSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDL 368 (1283)
T ss_pred cccccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccH
Confidence 5567888999999999999999877 9999999999999999999999999999999999999999999999999874
Q ss_pred ---------CCCCceeEEEEEeCcccc
Q 023876 239 ---------FTTDDFMGDAEIDIQPLV 256 (276)
Q Consensus 239 ---------~~~d~~lG~~~l~l~~l~ 256 (276)
...|||+|++.+.+..|.
T Consensus 369 ksklrqkl~resddflgqtvievrtls 395 (1283)
T KOG1011|consen 369 KSKLRQKLTRESDDFLGQTVIEVRTLS 395 (1283)
T ss_pred HHHHHHHhhhcccccccceeEEEEecc
Confidence 256899999999988775
No 115
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=99.16 E-value=5.6e-11 Score=107.13 Aligned_cols=100 Identities=20% Similarity=0.339 Sum_probs=83.8
Q ss_pred CeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhhhhcCCCCCCCCCCCCCHHHHHH
Q 023876 3 DIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSD 82 (276)
Q Consensus 3 ~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 82 (276)
+|+.+..|-|+|..|+|..|.|. .-+|||||+|.+++..|+..++. +||+.+.++|....+....-..+..+.+.-++
T Consensus 38 t~~~~~~g~fv~~~~sg~ls~l~-~ahRvksiSmttft~qevs~lQs-hgNq~~k~i~fkl~D~q~S~vPD~rn~~~~ke 115 (524)
T KOG0702|consen 38 TYVVYTVGSFVCTMCSGLLSGLN-PAHRVKSISMTTFTDQEVSFLQS-HGNQVCKEIWFKLFDFQRSNVPDSRNPQKVKE 115 (524)
T ss_pred eEEEeeccceeeeccchhhccCC-CccccceeeeeeccccchHHHhh-cchhhhhhhhhcchhhhhccCCCcccchhhHH
Confidence 79999999999999999999995 45999999999999999999977 59999999999887765434444455566679
Q ss_pred HHHHHHhcCccccCCcccccCCC
Q 023876 83 FIRRKYEKLEFFNFDEQALLCPY 105 (276)
Q Consensus 83 fI~~KY~~~~f~~~~~~~~~~~~ 105 (276)
||+.||+.++|+.+..+ ..-+.
T Consensus 116 f~q~~y~~kr~~v~~n~-~k~~s 137 (524)
T KOG0702|consen 116 FQQEKYVKKRYYVPKNQ-MKIPS 137 (524)
T ss_pred HHhhhhccceeecCccc-ccccc
Confidence 99999999999987766 44433
No 116
>PLN02223 phosphoinositide phospholipase C
Probab=99.06 E-value=1.3e-09 Score=101.43 Aligned_cols=96 Identities=24% Similarity=0.470 Sum_probs=78.3
Q ss_pred eEEEEEEEeeecCCC-----CCCC-CCCcEEEEEEC-----CeeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEE
Q 023876 168 GLIKVNVVKGTNLAV-----RDVM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYD 235 (276)
Q Consensus 168 g~L~V~v~~a~~L~~-----~~~~-~~dpyv~v~l~-----~~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d 235 (276)
..|.|+|+.|.+++. .+.. ..||||+|.+. ....+|.+..++.||+|||+|.|.+.. .-..|.|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 579999999998752 1222 68999999983 235677777788999999999999865 34568999999
Q ss_pred cCCCCCCceeEEEEEeCccccccccccC
Q 023876 236 KDTFTTDDFMGDAEIDIQPLVTAARACE 263 (276)
Q Consensus 236 ~~~~~~d~~lG~~~l~l~~l~~~~~~~~ 263 (276)
+|..+.++|+|++.+|+..|..|.....
T Consensus 489 ~D~~~~ddfiGQ~~LPv~~Lr~GyR~Vp 516 (537)
T PLN02223 489 YEVSTADAFCGQTCLPVSELIEGIRAVP 516 (537)
T ss_pred cCCCCCCcEEEEEecchHHhcCCceeEe
Confidence 9998899999999999999998877653
No 117
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.04 E-value=4.4e-10 Score=110.53 Aligned_cols=102 Identities=36% Similarity=0.538 Sum_probs=91.3
Q ss_pred hhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCe-eeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEc
Q 023876 160 LVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDK 236 (276)
Q Consensus 160 ~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~-~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~ 236 (276)
...+.+-+|.|.|.+..|.+|+..+.. .+||||++.+.+. .++|+++++|+||+|||.+...+.. ..+.+.|.|+||
T Consensus 1032 ~~emv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dw 1111 (1227)
T COG5038 1032 PVEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDW 1111 (1227)
T ss_pred cceeecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeec
Confidence 356788899999999999999999988 7999999999665 7899999999999999999999975 667899999999
Q ss_pred CCCCCCceeEEEEEeCccccccccc
Q 023876 237 DTFTTDDFMGDAEIDIQPLVTAARA 261 (276)
Q Consensus 237 ~~~~~d~~lG~~~l~l~~l~~~~~~ 261 (276)
|.-.+++.||.+.++|..+..+.+.
T Consensus 1112 d~~~knd~lg~~~idL~~l~~~~~~ 1136 (1227)
T COG5038 1112 DSGEKNDLLGTAEIDLSKLEPGGTT 1136 (1227)
T ss_pred ccCCCccccccccccHhhcCcCCcc
Confidence 9999999999999999988765443
No 118
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.94 E-value=3.5e-09 Score=104.32 Aligned_cols=98 Identities=30% Similarity=0.546 Sum_probs=86.4
Q ss_pred ccceeeEEEEEEEeeecCCCCCC--C-CCCcEEEEEEC-CeeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCC
Q 023876 163 MVEFVGLIKVNVVKGTNLAVRDV--M-TSDPYVILALG-HQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDT 238 (276)
Q Consensus 163 ~~~~~g~L~V~v~~a~~L~~~~~--~-~~dpyv~v~l~-~~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~ 238 (276)
.....|+|.|+|.+|++|...+. . ..|||+++.+. ....+|+++++++||+|||+|...+..-.++|.|+|||++.
T Consensus 431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~ 510 (1227)
T COG5038 431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNS 510 (1227)
T ss_pred cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccc
Confidence 56788999999999999998873 2 89999999984 34569999999999999999998888888999999999999
Q ss_pred CCCCceeEEEEEeCcccccccc
Q 023876 239 FTTDDFMGDAEIDIQPLVTAAR 260 (276)
Q Consensus 239 ~~~d~~lG~~~l~l~~l~~~~~ 260 (276)
+.+|+.+|.+.++|..|.....
T Consensus 511 ~~sd~vvG~~~l~L~~L~~~~~ 532 (1227)
T COG5038 511 FKSDKVVGSTQLDLALLHQNPV 532 (1227)
T ss_pred cCCcceeeeEEechHHhhhccc
Confidence 9999999999999998875443
No 119
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.93 E-value=1.5e-09 Score=99.93 Aligned_cols=91 Identities=31% Similarity=0.586 Sum_probs=83.8
Q ss_pred eEEEEEEEeeecCCCCCCC--CCCcEEEEEECCeeeccccccCCCCCeEe-eEEEEEeeC---CCCcEEEEEEEcCCCCC
Q 023876 168 GLIKVNVVKGTNLAVRDVM--TSDPYVILALGHQTVKTRVIKSNLNPVWN-ESLMLSIPE---NIPPLKVLVYDKDTFTT 241 (276)
Q Consensus 168 g~L~V~v~~a~~L~~~~~~--~~dpyv~v~l~~~~~~T~~~~~t~nP~w~-e~~~f~~~~---~~~~L~i~v~d~~~~~~ 241 (276)
|.|-|.|..||+||.+|.. ..|.||.+++++.+.+|.+..+++||.|| +.|.|++.+ ++++|.|.+.|+|..+.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa 82 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA 82 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence 6788999999999999987 78999999999999999999999999999 568899976 67899999999999999
Q ss_pred CceeEEEEEeCcccccc
Q 023876 242 DDFMGDAEIDIQPLVTA 258 (276)
Q Consensus 242 d~~lG~~~l~l~~l~~~ 258 (276)
+|-||.+.++++.|...
T Consensus 83 ndaigkv~i~idpl~~e 99 (1169)
T KOG1031|consen 83 NDAIGKVNIDIDPLCLE 99 (1169)
T ss_pred ccccceeeeccChHHHH
Confidence 99999999999988754
No 120
>PLN02952 phosphoinositide phospholipase C
Probab=98.91 E-value=9.3e-09 Score=97.50 Aligned_cols=96 Identities=26% Similarity=0.448 Sum_probs=78.5
Q ss_pred eeEEEEEEEeeecCCCC------CCC-CCCcEEEEEE-C----CeeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEE
Q 023876 167 VGLIKVNVVKGTNLAVR------DVM-TSDPYVILAL-G----HQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLV 233 (276)
Q Consensus 167 ~g~L~V~v~~a~~L~~~------~~~-~~dpyv~v~l-~----~~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v 233 (276)
...|.|+|+.|.+++.. +.. ..||||+|.+ | ..+.+|+++.++.||+|||+|.|.+.. ....|.|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 35799999999887531 111 3599999988 2 356789999999999999999998865 335689999
Q ss_pred EEcCCCCCCceeEEEEEeCcccccccccc
Q 023876 234 YDKDTFTTDDFMGDAEIDIQPLVTAARAC 262 (276)
Q Consensus 234 ~d~~~~~~d~~lG~~~l~l~~l~~~~~~~ 262 (276)
+|+|..+.++|+|++.++|..|..|....
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~GyR~V 577 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGIRSV 577 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCceeE
Confidence 99999889999999999999999888754
No 121
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.88 E-value=1.1e-08 Score=96.81 Aligned_cols=96 Identities=23% Similarity=0.434 Sum_probs=78.5
Q ss_pred eEEEEEEEeeecCCC---C---CCC-CCCcEEEEEE-C----CeeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEE
Q 023876 168 GLIKVNVVKGTNLAV---R---DVM-TSDPYVILAL-G----HQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVY 234 (276)
Q Consensus 168 g~L~V~v~~a~~L~~---~---~~~-~~dpyv~v~l-~----~~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~ 234 (276)
..|.|+|+.|.+++. . +.. ..||||+|.+ | ..+.+|++..++.||+|||+|.|.+.- .-..|+|.|+
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~ 548 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVH 548 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEE
Confidence 579999999998642 1 122 5799999998 2 235688888889999999999998765 3467899999
Q ss_pred EcCCCCCCceeEEEEEeCccccccccccC
Q 023876 235 DKDTFTTDDFMGDAEIDIQPLVTAARACE 263 (276)
Q Consensus 235 d~~~~~~d~~lG~~~l~l~~l~~~~~~~~ 263 (276)
|+|..+.++|+|++.+|+..|..|..+..
T Consensus 549 d~d~~~~ddfiGQ~~lPv~~Lr~GyR~V~ 577 (598)
T PLN02230 549 EHDINEKDDFGGQTCLPVSEIRQGIHAVP 577 (598)
T ss_pred ECCCCCCCCEEEEEEcchHHhhCccceEe
Confidence 99998899999999999999998877653
No 122
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.85 E-value=2.1e-08 Score=94.74 Aligned_cols=96 Identities=22% Similarity=0.359 Sum_probs=78.1
Q ss_pred eEEEEEEEeeecCC----CC--CCC-CCCcEEEEEEC-----CeeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEE
Q 023876 168 GLIKVNVVKGTNLA----VR--DVM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVY 234 (276)
Q Consensus 168 g~L~V~v~~a~~L~----~~--~~~-~~dpyv~v~l~-----~~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~ 234 (276)
..|.|+|+.|.+++ .. +.. ..||||+|.+- ..+.+|+++.++.||+|||.|.|.+.. .-..|+|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 56899999998743 11 112 57999999982 346789999999999999999998765 3467899999
Q ss_pred EcCCCCCCceeEEEEEeCccccccccccC
Q 023876 235 DKDTFTTDDFMGDAEIDIQPLVTAARACE 263 (276)
Q Consensus 235 d~~~~~~d~~lG~~~l~l~~l~~~~~~~~ 263 (276)
|+|..+.++|+|++.+++..|..|..+..
T Consensus 532 d~D~~~~ddfigq~~lPv~~Lr~GyR~V~ 560 (581)
T PLN02222 532 EYDMSEKDDFGGQTCLPVWELSQGIRAFP 560 (581)
T ss_pred ECCCCCCCcEEEEEEcchhhhhCccceEE
Confidence 99988889999999999999998877653
No 123
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.82 E-value=1.7e-08 Score=74.00 Aligned_cols=84 Identities=15% Similarity=0.286 Sum_probs=69.2
Q ss_pred EEEEEEeeecCCCCC---CC-CCCcEEEEEECCe-eeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCce
Q 023876 170 IKVNVVKGTNLAVRD---VM-TSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDF 244 (276)
Q Consensus 170 L~V~v~~a~~L~~~~---~~-~~dpyv~v~l~~~-~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~ 244 (276)
|.|+|..++++.-.+ +. .++|||.++++.. +.+|++. .||.|||.|.|.+. ....+.|.|||+.. ...--
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~s---rnd~WnE~F~i~Vd-k~nEiel~VyDk~~-~~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPS---RNDRWNEDFEIPVE-KNNEEEVIVYDKGG-DQPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCC---CCCcccceEEEEec-CCcEEEEEEEeCCC-Ceecc
Confidence 578999999997766 44 7899999999876 7888874 89999999999995 46789999999854 23446
Q ss_pred eEEEEEeCcccccc
Q 023876 245 MGDAEIDIQPLVTA 258 (276)
Q Consensus 245 lG~~~l~l~~l~~~ 258 (276)
+|..-+.|++|...
T Consensus 76 i~llW~~~sdi~Ee 89 (109)
T cd08689 76 VGLLWLRLSDIAEE 89 (109)
T ss_pred eeeehhhHHHHHHH
Confidence 89999999988754
No 124
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.81 E-value=9.2e-09 Score=96.60 Aligned_cols=99 Identities=22% Similarity=0.341 Sum_probs=86.5
Q ss_pred eEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-eeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCcee
Q 023876 168 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFM 245 (276)
Q Consensus 168 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~l 245 (276)
..|.|+|.+|++|+..+.. ..||||.|.++. ...+|.++.+++.|-|.|.|.|.++..-.-|.|-|||+| +++|+.|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~I 83 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDII 83 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-ccccccc
Confidence 3589999999999999887 899999999965 467999999999999999999999987788999999999 9999999
Q ss_pred EEEEEeCccccccccccCCCcc
Q 023876 246 GDAEIDIQPLVTAARACETPIS 267 (276)
Q Consensus 246 G~~~l~l~~l~~~~~~~~~~~~ 267 (276)
|.+.+.=++|......+.|..+
T Consensus 84 GKvai~re~l~~~~~~d~W~~L 105 (800)
T KOG2059|consen 84 GKVAIKREDLHMYPGKDTWFSL 105 (800)
T ss_pred ceeeeeHHHHhhCCCCccceec
Confidence 9999988888766544445443
No 125
>PLN02228 Phosphoinositide phospholipase C
Probab=98.78 E-value=5.1e-08 Score=91.97 Aligned_cols=97 Identities=21% Similarity=0.366 Sum_probs=78.5
Q ss_pred eEEEEEEEeeecCCC---CC---CC-CCCcEEEEEE-----CCeeeccccccCCCCCeE-eeEEEEEeeC-CCCcEEEEE
Q 023876 168 GLIKVNVVKGTNLAV---RD---VM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVW-NESLMLSIPE-NIPPLKVLV 233 (276)
Q Consensus 168 g~L~V~v~~a~~L~~---~~---~~-~~dpyv~v~l-----~~~~~~T~~~~~t~nP~w-~e~~~f~~~~-~~~~L~i~v 233 (276)
..|.|+|+.|.+|+. .+ .. ..||||+|.+ +..+.+|++++++.||+| +|.|.|.+.. .-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 469999999998731 11 12 4799999988 234578999988899999 9999999865 345789999
Q ss_pred EEcCCCCCCceeEEEEEeCccccccccccCC
Q 023876 234 YDKDTFTTDDFMGDAEIDIQPLVTAARACET 264 (276)
Q Consensus 234 ~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~ 264 (276)
+|+|..+.++|+|++.+++..|..|..+...
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~GYR~VpL 541 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSGVRAVRL 541 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCCeeEEEc
Confidence 9999888999999999999999988776543
No 126
>PLN02270 phospholipase D alpha
Probab=98.77 E-value=3e-08 Score=96.01 Aligned_cols=105 Identities=18% Similarity=0.256 Sum_probs=87.0
Q ss_pred ceeeEEEEEEEeeecCCCCC-----------------C--CCCCcEEEEEECCee-eccccccCC-CCCeEeeEEEEEee
Q 023876 165 EFVGLIKVNVVKGTNLAVRD-----------------V--MTSDPYVILALGHQT-VKTRVIKSN-LNPVWNESLMLSIP 223 (276)
Q Consensus 165 ~~~g~L~V~v~~a~~L~~~~-----------------~--~~~dpyv~v~l~~~~-~~T~~~~~t-~nP~w~e~~~f~~~ 223 (276)
..-|.|.|+|.+|++|+..+ . ..+||||.|.+++.+ .+|+++.+. .||.|+|+|.+.+.
T Consensus 5 llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~a 84 (808)
T PLN02270 5 LLHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCA 84 (808)
T ss_pred eeecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeec
Confidence 34588999999999998631 1 156999999997754 599999875 69999999999998
Q ss_pred CCCCcEEEEEEEcCCCCCCceeEEEEEeCccccccccccCCCccCCC
Q 023876 224 ENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSP 270 (276)
Q Consensus 224 ~~~~~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~~~~~ 270 (276)
.....+.|+|.|.+.++. .+||.+.+++.+++.+.....|.+.++.
T Consensus 85 h~~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~ 130 (808)
T PLN02270 85 HMASNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDN 130 (808)
T ss_pred cCcceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCC
Confidence 777899999999998865 5999999999999998877777666543
No 127
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.76 E-value=2.4e-09 Score=100.67 Aligned_cols=93 Identities=28% Similarity=0.480 Sum_probs=81.0
Q ss_pred ceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-------eeeccccccCCCCCeEeeEEEEEeeC-----CCCcEEE
Q 023876 165 EFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-------QTVKTRVIKSNLNPVWNESLMLSIPE-----NIPPLKV 231 (276)
Q Consensus 165 ~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-------~~~~T~~~~~t~nP~w~e~~~f~~~~-----~~~~L~i 231 (276)
--...|.|.|+-|+++.+.|.+ .+||||++.++. ..++|++++.|+||+|+|.|.|.++. ....|.|
T Consensus 944 ~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~F 1023 (1103)
T KOG1328|consen 944 GNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHF 1023 (1103)
T ss_pred ccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEE
Confidence 3345788889999999999988 999999999964 35799999999999999999999975 2457999
Q ss_pred EEEEcCCCCCCceeEEEEEeCccccc
Q 023876 232 LVYDKDTFTTDDFMGDAEIDIQPLVT 257 (276)
Q Consensus 232 ~v~d~~~~~~d~~lG~~~l~l~~l~~ 257 (276)
+|.|+|-++.+||-|++.+.|.++..
T Consensus 1024 TVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1024 TVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred EeeccceecccccchHHHHhhCCCCC
Confidence 99999999999999999999988764
No 128
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.75 E-value=2.4e-08 Score=94.98 Aligned_cols=98 Identities=22% Similarity=0.406 Sum_probs=78.9
Q ss_pred EEEEEEEeeecCCC-CCC---C-CCCcEEEEEEC-----Ceeecccc-ccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEc
Q 023876 169 LIKVNVVKGTNLAV-RDV---M-TSDPYVILALG-----HQTVKTRV-IKSNLNPVWNESLMLSIPE-NIPPLKVLVYDK 236 (276)
Q Consensus 169 ~L~V~v~~a~~L~~-~~~---~-~~dpyv~v~l~-----~~~~~T~~-~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~ 236 (276)
.|.|+|+.|.+++. .+. . ..||||.|.+- ....+|++ ..++-||.|+|+|.|.+.. .-.-|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 69999999996644 222 2 68999999883 24578995 4567899999999999876 345789999999
Q ss_pred CCCCCCceeEEEEEeCccccccccccCCCc
Q 023876 237 DTFTTDDFMGDAEIDIQPLVTAARACETPI 266 (276)
Q Consensus 237 ~~~~~d~~lG~~~l~l~~l~~~~~~~~~~~ 266 (276)
|..++|+|+|++.+|+..|..|..+..-..
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRhVpL~~ 726 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRHVPLLS 726 (746)
T ss_pred CCCCcccccceeeccHHHhhCceeeeeecC
Confidence 999999999999999999998887754333
No 129
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.70 E-value=5.3e-08 Score=92.78 Aligned_cols=93 Identities=24% Similarity=0.438 Sum_probs=77.5
Q ss_pred eEEEEEEEeeecCCCCCCCCCCcEEEEEEC-----Cee-eccccccCCCCCeEe-eEEEEEeeC-CCCcEEEEEEEcCCC
Q 023876 168 GLIKVNVVKGTNLAVRDVMTSDPYVILALG-----HQT-VKTRVIKSNLNPVWN-ESLMLSIPE-NIPPLKVLVYDKDTF 239 (276)
Q Consensus 168 g~L~V~v~~a~~L~~~~~~~~dpyv~v~l~-----~~~-~~T~~~~~t~nP~w~-e~~~f~~~~-~~~~L~i~v~d~~~~ 239 (276)
-.|.|.|+.||.|+..+.+...|||+|.+- ..+ ++|.+..+.+||+|| |.|+|.+.+ .-..|+|.|+|.|.+
T Consensus 1065 ~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmf 1144 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMF 1144 (1267)
T ss_pred eEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccccc
Confidence 468899999999998777778899999882 233 455566678999999 999999977 446789999999999
Q ss_pred CCCceeEEEEEeCcccccccc
Q 023876 240 TTDDFMGDAEIDIQPLVTAAR 260 (276)
Q Consensus 240 ~~d~~lG~~~l~l~~l~~~~~ 260 (276)
+...|||++.+|+..+..+..
T Consensus 1145 s~~~FiaqA~yPv~~ik~GfR 1165 (1267)
T KOG1264|consen 1145 SDPNFLAQATYPVKAIKSGFR 1165 (1267)
T ss_pred CCcceeeeeecchhhhhccce
Confidence 999999999999988876644
No 130
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.34 E-value=4.3e-07 Score=88.43 Aligned_cols=94 Identities=31% Similarity=0.409 Sum_probs=80.7
Q ss_pred ceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCee--eccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCCCC
Q 023876 165 EFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQT--VKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFT 240 (276)
Q Consensus 165 ~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~--~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~~~ 240 (276)
.....+.|.|++|.+|.+.|.. ..|||+.+.+|++. -+...+.+|+||+|.+.|.+...- ....++++|||+|.++
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~ 689 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA 689 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc
Confidence 3445788999999999999987 99999999999876 477889999999999998887654 4567899999999999
Q ss_pred CCceeEEEEEeCcccccc
Q 023876 241 TDDFMGDAEIDIQPLVTA 258 (276)
Q Consensus 241 ~d~~lG~~~l~l~~l~~~ 258 (276)
.|+.||++.++|++-...
T Consensus 690 ~d~~iget~iDLEnR~~T 707 (1105)
T KOG1326|consen 690 QDEKIGETTIDLENRWLT 707 (1105)
T ss_pred ccchhhceehhhhhcccC
Confidence 999999999999865433
No 131
>PLN02964 phosphatidylserine decarboxylase
Probab=98.25 E-value=1.5e-06 Score=83.35 Aligned_cols=92 Identities=23% Similarity=0.444 Sum_probs=77.3
Q ss_pred hcccceeeEEEEEEEeeecCCCCCCCCCCcE-EEEEECCeeeccccccCCCCCeEeeEEEEEeeC-CCCcEEEEEEEcCC
Q 023876 161 VAMVEFVGLIKVNVVKGTNLAVRDVMTSDPY-VILALGHQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDT 238 (276)
Q Consensus 161 ~~~~~~~g~L~V~v~~a~~L~~~~~~~~dpy-v~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~-~~~~L~i~v~d~~~ 238 (276)
.....+.|++.|++++|+ ++ ..|+| +.+.+|.+.++|.+.++|+||+||+...|.+.. .....+|.|||++.
T Consensus 47 ~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (644)
T PLN02964 47 VSAEDFSGIALLTLVGAE----MK--FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNR 120 (644)
T ss_pred eecccccCeEEEEeehhh----hc--cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCC
Confidence 345678999999999986 33 24775 567889999999999999999999999999866 34457999999999
Q ss_pred CCCCceeEEEEEeCcccccc
Q 023876 239 FTTDDFMGDAEIDIQPLVTA 258 (276)
Q Consensus 239 ~~~d~~lG~~~l~l~~l~~~ 258 (276)
++.++++|.++++|.++...
T Consensus 121 ~s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 121 LSKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred CCHHHhhhheeecHhhccHH
Confidence 99999999999998877644
No 132
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.14 E-value=1.8e-06 Score=85.39 Aligned_cols=100 Identities=23% Similarity=0.271 Sum_probs=82.9
Q ss_pred ceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC-----CeeeccccccCCCCCeEeeEEEEEeeC----CCCcEEEEEE
Q 023876 165 EFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVY 234 (276)
Q Consensus 165 ~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~-----~~~~~T~~~~~t~nP~w~e~~~f~~~~----~~~~L~i~v~ 234 (276)
...+.|.|.|.-+++|+-..-+ .+||||+.++- ..+.+|+++++|.||.|||.+.+.... ....|.++||
T Consensus 1521 Y~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVl 1600 (1639)
T KOG0905|consen 1521 YNNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVL 1600 (1639)
T ss_pred EcCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeee
Confidence 3478999999999999665555 89999999993 246799999999999999999887432 3468999999
Q ss_pred EcCCCCCCceeEEEEEeCccccccccccCC
Q 023876 235 DKDTFTTDDFMGDAEIDIQPLVTAARACET 264 (276)
Q Consensus 235 d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~ 264 (276)
..+.+..+.++|.+.++|.++...++...|
T Consensus 1601 s~~~~~en~~lg~v~i~L~~~~l~kE~~~W 1630 (1639)
T KOG0905|consen 1601 SNGGLLENVFLGGVNIPLLKVDLLKESVGW 1630 (1639)
T ss_pred cccceeeeeeeeeeecchhhcchhhhhcce
Confidence 999998999999999999988766655444
No 133
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=2.8e-06 Score=73.86 Aligned_cols=99 Identities=24% Similarity=0.257 Sum_probs=81.2
Q ss_pred chhhhhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC-----CeeeccccccCCCCCeEeeEEEEEeeC---
Q 023876 154 SKKANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE--- 224 (276)
Q Consensus 154 ~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~-----~~~~~T~~~~~t~nP~w~e~~~f~~~~--- 224 (276)
.+.+...+.|.....-|.|+++++..|..+|.. .+||||.+++. ..+.+|.+.+++++|+|+++|.|.+..
T Consensus 219 rg~i~isl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdL 298 (362)
T KOG1013|consen 219 RGAILISLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDL 298 (362)
T ss_pred ccceeeeeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccch
Confidence 344444567777888899999999999999988 99999999983 246799999999999999999999866
Q ss_pred CCCcEEEEEEEcCCCCCCceeEEEEEeC
Q 023876 225 NIPPLKVLVYDKDTFTTDDFMGDAEIDI 252 (276)
Q Consensus 225 ~~~~L~i~v~d~~~~~~d~~lG~~~l~l 252 (276)
....+.|.|||.+.....+++|-....+
T Consensus 299 a~~kv~lsvgd~~~G~s~d~~GG~~~g~ 326 (362)
T KOG1013|consen 299 AYKKVALSVGDYDIGKSNDSIGGSMLGG 326 (362)
T ss_pred hcceEEEeecccCCCcCccCCCcccccc
Confidence 3457889999998877888888765543
No 134
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.08 E-value=3.3e-06 Score=79.83 Aligned_cols=95 Identities=18% Similarity=0.273 Sum_probs=70.6
Q ss_pred EEEEEeeecCCCCCCCCCCcEEEEEECCe----eeccccccCCCCCeEeeEEEEEeeCC----------------CCcEE
Q 023876 171 KVNVVKGTNLAVRDVMTSDPYVILALGHQ----TVKTRVIKSNLNPVWNESLMLSIPEN----------------IPPLK 230 (276)
Q Consensus 171 ~V~v~~a~~L~~~~~~~~dpyv~v~l~~~----~~~T~~~~~t~nP~w~e~~~f~~~~~----------------~~~L~ 230 (276)
.+.++.++++.+...+.+|||+.+..... ..+|++.+.|.+|.|+|.|.|.+... ...|+
T Consensus 134 ~c~~L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~ir 213 (800)
T KOG2059|consen 134 VCHVLKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIR 213 (800)
T ss_pred hhhhhhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEE
Confidence 34445555665555557999999998543 46999999999999999999988542 23588
Q ss_pred EEEEE-cCCCCCCceeEEEEEeCccccccccccCCC
Q 023876 231 VLVYD-KDTFTTDDFMGDAEIDIQPLVTAARACETP 265 (276)
Q Consensus 231 i~v~d-~~~~~~d~~lG~~~l~l~~l~~~~~~~~~~ 265 (276)
+.+|+ ++....++|+|++.+++..+........|.
T Consensus 214 v~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~ 249 (800)
T KOG2059|consen 214 VDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWY 249 (800)
T ss_pred EeeccchhhhhhhhhceeEEeehhhhhhccCccceE
Confidence 99998 566667999999999998877433333333
No 135
>PLN02352 phospholipase D epsilon
Probab=97.89 E-value=4.8e-05 Score=74.02 Aligned_cols=96 Identities=17% Similarity=0.330 Sum_probs=71.6
Q ss_pred eeeEEEEEEEeeecCCCC----CC-C-CCCcEEEEEECCee-eccccccCCCCCeEeeEEEEEeeCCC-CcEEEEEEEcC
Q 023876 166 FVGLIKVNVVKGTNLAVR----DV-M-TSDPYVILALGHQT-VKTRVIKSNLNPVWNESLMLSIPENI-PPLKVLVYDKD 237 (276)
Q Consensus 166 ~~g~L~V~v~~a~~L~~~----~~-~-~~dpyv~v~l~~~~-~~T~~~~~t~nP~w~e~~~f~~~~~~-~~L~i~v~d~~ 237 (276)
.-|.|.++|.+|+-+... .. . ..+|||.|.+++.+ .+| .+..||+|+|.|.+.+.... ..+.|+|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~-- 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT-- 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec--
Confidence 457899999999733211 11 1 23999999997754 478 55669999999999987655 579999988
Q ss_pred CCCCCceeEEEEEeCcccccccc-ccCCCccCC
Q 023876 238 TFTTDDFMGDAEIDIQPLVTAAR-ACETPISMS 269 (276)
Q Consensus 238 ~~~~d~~lG~~~l~l~~l~~~~~-~~~~~~~~~ 269 (276)
...+||.+.+++.+|+.+.. .+.|.+.++
T Consensus 83 ---~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~ 112 (758)
T PLN02352 83 ---KCSILGRFHIQAHQIVTEASFINGFFPLIM 112 (758)
T ss_pred ---CCeEEEEEEEEHHHhhCCCcccceEEEccc
Confidence 26799999999999998866 555555543
No 136
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=97.82 E-value=2.6e-06 Score=80.76 Aligned_cols=90 Identities=27% Similarity=0.569 Sum_probs=71.8
Q ss_pred EEEEEEEeeecCCCCCCC-CCCcEEEEEE--C----C-------------------------eeeccccccCCCCCeEee
Q 023876 169 LIKVNVVKGTNLAVRDVM-TSDPYVILAL--G----H-------------------------QTVKTRVIKSNLNPVWNE 216 (276)
Q Consensus 169 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l--~----~-------------------------~~~~T~~~~~t~nP~w~e 216 (276)
.+.|.+.+|.+|..++.. .+|||+...+ + + -.+-|.+.++|+||.|+|
T Consensus 115 ~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~E 194 (1103)
T KOG1328|consen 115 LLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSE 194 (1103)
T ss_pred HHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchhh
Confidence 355667788899888877 8999988765 1 0 014578888999999999
Q ss_pred EEEEEeeC-CCCcEEEEEEEcCCC---------------------------------CC---CceeEEEEEeCcccccc
Q 023876 217 SLMLSIPE-NIPPLKVLVYDKDTF---------------------------------TT---DDFMGDAEIDIQPLVTA 258 (276)
Q Consensus 217 ~~~f~~~~-~~~~L~i~v~d~~~~---------------------------------~~---d~~lG~~~l~l~~l~~~ 258 (276)
.|.|.+.+ ..+.+.+-+||+|.- +. |||+|.+.++|+++...
T Consensus 195 kF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~~ 273 (1103)
T KOG1328|consen 195 KFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPPD 273 (1103)
T ss_pred heeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCcc
Confidence 99999988 678899999998741 33 78999999999998754
No 137
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=4.4e-06 Score=72.66 Aligned_cols=103 Identities=21% Similarity=0.345 Sum_probs=83.2
Q ss_pred hhhhhhhcccceeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eeeccccccCCCCCeEeeEEEEEeeC----
Q 023876 155 KKANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPE---- 224 (276)
Q Consensus 155 ~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~-----~~~~T~~~~~t~nP~w~e~~~f~~~~---- 224 (276)
+...+.+.|..-...+.++|.+|.+|.+++.. ..|||+++.+.. .+.+|++..+++||.|+|...+....
T Consensus 80 g~~~~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~ 159 (362)
T KOG1013|consen 80 GALEFELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDT 159 (362)
T ss_pred cchhhhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchh
Confidence 33445566777778899999999999999988 899999998842 35788999999999999987765422
Q ss_pred CCCcEEEEEEEcCCCCCCceeEEEEEeCccccc
Q 023876 225 NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVT 257 (276)
Q Consensus 225 ~~~~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~ 257 (276)
....+.+.|.|.+.+..++++|+..|.+..|..
T Consensus 160 ~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p 192 (362)
T KOG1013|consen 160 HLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKP 192 (362)
T ss_pred hhhhhheeeccCcccccccCcccchhhhhccCh
Confidence 335678899999999999999999988776653
No 138
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.70 E-value=5.2e-05 Score=53.62 Aligned_cols=89 Identities=13% Similarity=0.178 Sum_probs=64.7
Q ss_pred EEEEEeeecCCCCCCC--CCCcEEEE--EECC-eeeccccccCCCCCeEeeEEEEEeeC---CCCcEEEEEEEcCCCCCC
Q 023876 171 KVNVVKGTNLAVRDVM--TSDPYVIL--ALGH-QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTFTTD 242 (276)
Q Consensus 171 ~V~v~~a~~L~~~~~~--~~dpyv~v--~l~~-~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~i~v~d~~~~~~d 242 (276)
-|+|+.+++|.-.... .+.-|++- .+.+ ...+|.+.+...||+|.|+|.|.+.. +.-.|.|.|+. ...+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 3678888888654433 33345542 3333 45789999999999999999998754 44568888887 55678
Q ss_pred ceeEEEEEeCccccccccc
Q 023876 243 DFMGDAEIDIQPLVTAARA 261 (276)
Q Consensus 243 ~~lG~~~l~l~~l~~~~~~ 261 (276)
+.||.+.+.++++-..+..
T Consensus 80 e~iG~~sL~l~s~geeE~~ 98 (103)
T cd08684 80 RTIGECSLSLRTLSTQETD 98 (103)
T ss_pred ceeeEEEeecccCCHHHhh
Confidence 8999999999988654433
No 139
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=2.3e-05 Score=69.36 Aligned_cols=108 Identities=20% Similarity=0.291 Sum_probs=86.0
Q ss_pred hcccceeeEEEEEEEeeecCCCCCCC--CCCcEEEEEEC--C---eeeccccccCCCCCeEeeEEEEEeeCCCCcEEEEE
Q 023876 161 VAMVEFVGLIKVNVVKGTNLAVRDVM--TSDPYVILALG--H---QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLV 233 (276)
Q Consensus 161 ~~~~~~~g~L~V~v~~a~~L~~~~~~--~~dpyv~v~l~--~---~~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v 233 (276)
.......|.+.|.|++|++|..+... .++|||+|++- + .+.+|+...+|++|.+-+...|.-......|.++|
T Consensus 262 ~~~~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv 341 (405)
T KOG2060|consen 262 IALMDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTV 341 (405)
T ss_pred hhhhcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEE
Confidence 35566788999999999999776544 78999999982 2 35689999999999999888888877778899999
Q ss_pred EE-cCCCCCCceeEEEEEeCccccccc-cccCCCccC
Q 023876 234 YD-KDTFTTDDFMGDAEIDIQPLVTAA-RACETPISM 268 (276)
Q Consensus 234 ~d-~~~~~~d~~lG~~~l~l~~l~~~~-~~~~~~~~~ 268 (276)
|. ..++..+.|+|.+.+-+.+|-... ....|..++
T Consensus 342 ~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlf 378 (405)
T KOG2060|consen 342 WGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLF 378 (405)
T ss_pred eccccccchHHHhhHHHHHhhhhccccccceeeeecc
Confidence 94 667888889999999988887665 334444444
No 140
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.44 E-value=0.00056 Score=52.09 Aligned_cols=75 Identities=17% Similarity=0.345 Sum_probs=58.4
Q ss_pred CCCcEEEEEE----CCeeeccccccCCCCCeEeeEEEEEeeC----------------CCCcEEEEEEEcCC--------
Q 023876 187 TSDPYVILAL----GHQTVKTRVIKSNLNPVWNESLMLSIPE----------------NIPPLKVLVYDKDT-------- 238 (276)
Q Consensus 187 ~~dpyv~v~l----~~~~~~T~~~~~t~nP~w~e~~~f~~~~----------------~~~~L~i~v~d~~~-------- 238 (276)
.-|+|+.+.+ ++...+|+++-++..|.|+..++|.++- ....+.|+||+...
T Consensus 32 GVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~ 111 (143)
T cd08683 32 GVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIK 111 (143)
T ss_pred ccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceec
Confidence 4589999986 4567899999999999999999997751 12368899998653
Q ss_pred --CCCCceeEEEEEeCccccccccc
Q 023876 239 --FTTDDFMGDAEIDIQPLVTAARA 261 (276)
Q Consensus 239 --~~~d~~lG~~~l~l~~l~~~~~~ 261 (276)
...|-+||.+.+|+.+|+.....
T Consensus 112 ~~~~~DilLG~v~IPl~~Ll~~rsG 136 (143)
T cd08683 112 IETSGDILLGTVKIPLRDLLTKRSG 136 (143)
T ss_pred cCcCCcEEEEEEEeeHHHHhhcccC
Confidence 23455899999999999865543
No 141
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.34 E-value=3.8e-05 Score=75.34 Aligned_cols=87 Identities=24% Similarity=0.385 Sum_probs=72.4
Q ss_pred EEEEEEEeeecCCCCCCC-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeC----------CCCcEEEEEEEcC
Q 023876 169 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE----------NIPPLKVLVYDKD 237 (276)
Q Consensus 169 ~L~V~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~----------~~~~L~i~v~d~~ 237 (276)
.+++.|.+|+.|...+.. .+|||+.+.+-++.+.|.++..|+||.|+++..|.-.. ....+.|+|||.+
T Consensus 207 ~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~d 286 (1105)
T KOG1326|consen 207 PLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLD 286 (1105)
T ss_pred hhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhh
Confidence 456677888999888877 89999999999999999999999999999999985321 2345789999999
Q ss_pred CCCCCceeEEEEEeCccc
Q 023876 238 TFTTDDFMGDAEIDIQPL 255 (276)
Q Consensus 238 ~~~~d~~lG~~~l~l~~l 255 (276)
+.+.++|+|.......-+
T Consensus 287 r~g~~ef~gr~~~~p~V~ 304 (1105)
T KOG1326|consen 287 RSGINEFKGRKKQRPYVM 304 (1105)
T ss_pred hhchHHhhcccccceEEE
Confidence 999999999987665433
No 142
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.24 E-value=0.00068 Score=63.31 Aligned_cols=87 Identities=25% Similarity=0.483 Sum_probs=69.4
Q ss_pred EEEEEEeeecCCCCCCC-CCCcEEEEEEC--C----eeeccccccCCCCCeEeeEEEEEee-----CCCCcEEEEEEEcC
Q 023876 170 IKVNVVKGTNLAVRDVM-TSDPYVILALG--H----QTVKTRVIKSNLNPVWNESLMLSIP-----ENIPPLKVLVYDKD 237 (276)
Q Consensus 170 L~V~v~~a~~L~~~~~~-~~dpyv~v~l~--~----~~~~T~~~~~t~nP~w~e~~~f~~~-----~~~~~L~i~v~d~~ 237 (276)
...-.++|++|..++.. .+|||..+.-. . ..++|.+++++++|.|.+ |.+... +...++.|.+||++
T Consensus 138 ~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~ 216 (529)
T KOG1327|consen 138 VVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYD 216 (529)
T ss_pred eeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccC
Confidence 33445668899999988 99999887652 2 357999999999999997 444432 24578999999999
Q ss_pred CCCCCceeEEEEEeCccccc
Q 023876 238 TFTTDDFMGDAEIDIQPLVT 257 (276)
Q Consensus 238 ~~~~d~~lG~~~l~l~~l~~ 257 (276)
.-++++++|.+..++..+..
T Consensus 217 ~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 217 SNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred CCCCcCceeEecccHHHhcc
Confidence 99999999999999988864
No 143
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.0015 Score=61.91 Aligned_cols=92 Identities=20% Similarity=0.283 Sum_probs=72.6
Q ss_pred EEEEEEEeeecCCCCCCCCCCcEEEEEE-C------CeeeccccccCCCCCeEeeEEEEEeeCC----CCcEEEEEEEcC
Q 023876 169 LIKVNVVKGTNLAVRDVMTSDPYVILAL-G------HQTVKTRVIKSNLNPVWNESLMLSIPEN----IPPLKVLVYDKD 237 (276)
Q Consensus 169 ~L~V~v~~a~~L~~~~~~~~dpyv~v~l-~------~~~~~T~~~~~t~nP~w~e~~~f~~~~~----~~~L~i~v~d~~ 237 (276)
.++|.|+.|.+|.-...+...|||.|.+ | +.+..|+...++-.|.+||+|+|-+... ...|.|.|.|+-
T Consensus 1126 kvtvkvvaandlkwqtsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYC 1205 (1283)
T KOG1011|consen 1126 KVTVKVVAANDLKWQTSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDYC 1205 (1283)
T ss_pred eEEEEEEecccccchhccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhhe
Confidence 5788889999997666557789999988 2 2356788888888899999999988652 346888898876
Q ss_pred CCCCCceeEEEEEeCcccccccc
Q 023876 238 TFTTDDFMGDAEIDIQPLVTAAR 260 (276)
Q Consensus 238 ~~~~d~~lG~~~l~l~~l~~~~~ 260 (276)
....|..+|.+.+.|.++...+.
T Consensus 1206 FAReDRvvGl~VlqL~~va~kGS 1228 (1283)
T KOG1011|consen 1206 FAREDRVVGLAVLQLRSVADKGS 1228 (1283)
T ss_pred eecccceeeeeeeehhhHhhcCc
Confidence 66667899999999999875543
No 144
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.80 E-value=0.00067 Score=60.98 Aligned_cols=103 Identities=23% Similarity=0.308 Sum_probs=77.6
Q ss_pred eEEEEEEEeeecCCCCCCC-CCCcEEEEEE-----CCeeeccccccCCCCCeEeeEEEEEeeC---C---------CCcE
Q 023876 168 GLIKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPE---N---------IPPL 229 (276)
Q Consensus 168 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l-----~~~~~~T~~~~~t~nP~w~e~~~f~~~~---~---------~~~L 229 (276)
..|.+.|+++.+++.-..- -.|-|+.+.+ ..++.+|.+++.|.+|.|+|.|.+.+.. . ..-+
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~ 446 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK 446 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence 3466777888777654322 4567887766 2467899999999999999999998854 1 2358
Q ss_pred EEEEEEcCC-CCCCceeEEEEEeCccccccccccCCCccCCC
Q 023876 230 KVLVYDKDT-FTTDDFMGDAEIDIQPLVTAARACETPISMSP 270 (276)
Q Consensus 230 ~i~v~d~~~-~~~d~~lG~~~l~l~~l~~~~~~~~~~~~~~~ 270 (276)
+|++|++.. +.+|.++|.+.+.|..|....+.++..+++.+
T Consensus 447 kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG 488 (523)
T KOG3837|consen 447 KFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG 488 (523)
T ss_pred eEEEeeccccccccceeceeeeeehhhhcccchhhceecccc
Confidence 999999876 45678999999999988877777776666544
No 145
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=96.10 E-value=0.064 Score=48.19 Aligned_cols=84 Identities=17% Similarity=0.308 Sum_probs=70.2
Q ss_pred EEEEEEeeecCCCCCCCCCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeC--------CCCcEEEEEEEcC-CCC
Q 023876 170 IKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE--------NIPPLKVLVYDKD-TFT 240 (276)
Q Consensus 170 L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~--------~~~~L~i~v~d~~-~~~ 240 (276)
+.|.|++|++.+... ...-++..++++....|..+.++-.|.||..+..+++. +..+|++++|.-+ .-+
T Consensus 2 ivl~i~egr~F~~~~--~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~ 79 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP--RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTG 79 (340)
T ss_pred EEEEEecccCCCCCC--CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCC
Confidence 578999999998763 33456778889999999999999999999999888753 4578999999987 556
Q ss_pred CCceeEEEEEeCccc
Q 023876 241 TDDFMGDAEIDIQPL 255 (276)
Q Consensus 241 ~d~~lG~~~l~l~~l 255 (276)
..+.+|.+-++|..+
T Consensus 80 ~re~iGyv~LdLRsa 94 (340)
T PF12416_consen 80 KRESIGYVVLDLRSA 94 (340)
T ss_pred cceeccEEEEEcccc
Confidence 778999999999988
No 146
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.03 E-value=0.014 Score=57.23 Aligned_cols=90 Identities=24% Similarity=0.531 Sum_probs=68.1
Q ss_pred eeeEEEEEEEeeecCCCCCCCCCCcEEEEEE-C------CeeeccccccC-CCCCeEeeE-EEEEe--eCCCCcEEEEEE
Q 023876 166 FVGLIKVNVVKGTNLAVRDVMTSDPYVILAL-G------HQTVKTRVIKS-NLNPVWNES-LMLSI--PENIPPLKVLVY 234 (276)
Q Consensus 166 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l-~------~~~~~T~~~~~-t~nP~w~e~-~~f~~--~~~~~~L~i~v~ 234 (276)
.++.|.|+|++|.-|..+.. ..||.|.+ | ...++|++... +.||+|+|. |.|.- -+.-..|+|.||
T Consensus 701 IA~t~sV~VISgqFLSdrkv---gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDRKV---GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EEeeEEEEEEeeeecccccc---CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 34678999999988876653 58999987 2 24578888775 599999964 67752 234568999999
Q ss_pred EcCCCCCCceeEEEEEeCcccccccccc
Q 023876 235 DKDTFTTDDFMGDAEIDIQPLVTAARAC 262 (276)
Q Consensus 235 d~~~~~~d~~lG~~~l~l~~l~~~~~~~ 262 (276)
+.. ..+||+-.+++.-|..|..+.
T Consensus 778 eEg----gK~ig~RIlpvd~l~~GYrhv 801 (1189)
T KOG1265|consen 778 EEG----GKFIGQRILPVDGLNAGYRHV 801 (1189)
T ss_pred ccC----CceeeeeccchhcccCcceeE
Confidence 864 469999999999988776543
No 147
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.52 E-value=0.13 Score=41.78 Aligned_cols=87 Identities=23% Similarity=0.306 Sum_probs=59.2
Q ss_pred eEEEEEEEeeecCCCCCCCCCCcEEEEEE--CCee----eccccccCCCCCeEeeEEEEEeeC----CCCcEEEEEEEcC
Q 023876 168 GLIKVNVVKGTNLAVRDVMTSDPYVILAL--GHQT----VKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDKD 237 (276)
Q Consensus 168 g~L~V~v~~a~~L~~~~~~~~dpyv~v~l--~~~~----~~T~~~~~t~nP~w~e~~~f~~~~----~~~~L~i~v~d~~ 237 (276)
..+.|+|+.+.++...+ ...+-||.+.+ |.+. ..|+.+.-...+.|||.+.|.+.- ....|.|+||+..
T Consensus 8 ~~f~i~i~~~~~~~~~~-~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 8 EKFSITLHKISNLNAAE-RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CCEEEEEEEeccCccCC-CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 35788999998887611 24566777654 5543 355555445679999999998743 3457899999854
Q ss_pred CCC----------------CCceeEEEEEeCccc
Q 023876 238 TFT----------------TDDFMGDAEIDIQPL 255 (276)
Q Consensus 238 ~~~----------------~d~~lG~~~l~l~~l 255 (276)
... .+..||.+.++|-+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 321 246899999998753
No 148
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.46 E-value=0.15 Score=40.80 Aligned_cols=86 Identities=19% Similarity=0.239 Sum_probs=58.8
Q ss_pred eeEEEEEEEeeecCCCCCCCCCCcEEEEEE--CCeee----ccccccCCCCCeEeeEEEEEeeC----CCCcEEEEEEEc
Q 023876 167 VGLIKVNVVKGTNLAVRDVMTSDPYVILAL--GHQTV----KTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDK 236 (276)
Q Consensus 167 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~l--~~~~~----~T~~~~~t~nP~w~e~~~f~~~~----~~~~L~i~v~d~ 236 (276)
...+.|+|+.+.++...+ ..+-||.+.+ |++.. .|..+.. .++.|||.+.|.+.- ....|.|+||+.
T Consensus 7 ~~~~~v~i~~~~~~~~~~--~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 7 NSNLRIKILCATYVNVND--IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCCeEEEEEeeccCCCCC--cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 345789999999887643 4678888765 55432 3443333 579999999998743 345799999986
Q ss_pred CCCC----CCceeEEEEEeCccc
Q 023876 237 DTFT----TDDFMGDAEIDIQPL 255 (276)
Q Consensus 237 ~~~~----~d~~lG~~~l~l~~l 255 (276)
.... ....+|.+.++|-+.
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECC
Confidence 5321 224699999998753
No 149
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=95.40 E-value=0.13 Score=40.82 Aligned_cols=87 Identities=18% Similarity=0.227 Sum_probs=56.5
Q ss_pred EEEEEEEeeecCCCCCCCCCCcEEEEEE--CCee----eccccccCCCCCeEeeEEEEEeeC----CCCcEEEEEEEcCC
Q 023876 169 LIKVNVVKGTNLAVRDVMTSDPYVILAL--GHQT----VKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDKDT 238 (276)
Q Consensus 169 ~L~V~v~~a~~L~~~~~~~~dpyv~v~l--~~~~----~~T~~~~~t~nP~w~e~~~f~~~~----~~~~L~i~v~d~~~ 238 (276)
.+.|++....++...+....+-||.+.+ |++. ..|.......++.|||.+.|.+.- ....|.|+||+.+.
T Consensus 9 ~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~ 88 (156)
T cd08380 9 NLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSE 88 (156)
T ss_pred CeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEec
Confidence 4667777766665422224566776655 5432 233333333679999999998643 34579999999765
Q ss_pred CC--CCceeEEEEEeCccc
Q 023876 239 FT--TDDFMGDAEIDIQPL 255 (276)
Q Consensus 239 ~~--~d~~lG~~~l~l~~l 255 (276)
.+ .+..||.+.++|-+.
T Consensus 89 ~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 89 PGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred CCCCcceEEEEEeEEeEcc
Confidence 43 467899999998753
No 150
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=94.86 E-value=0.15 Score=40.53 Aligned_cols=94 Identities=14% Similarity=0.281 Sum_probs=67.2
Q ss_pred eeEEEEEEEeeecCCCCCC---C--CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeCC--------------CC
Q 023876 167 VGLIKVNVVKGTNLAVRDV---M--TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPEN--------------IP 227 (276)
Q Consensus 167 ~g~L~V~v~~a~~L~~~~~---~--~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~~--------------~~ 227 (276)
.-.|+|+|..++-....-. . .+-..+-+.+++|.++|+.+..+.+|.|+|.|.|+++.. .+
T Consensus 8 ~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~ 87 (156)
T PF15627_consen 8 RRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISD 87 (156)
T ss_pred ceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCC
Confidence 3467888887764322111 1 223344456699999999999999999999999998652 24
Q ss_pred cEEEEEEEcCCCCCCceeEEEEEeCcccccccc
Q 023876 228 PLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAAR 260 (276)
Q Consensus 228 ~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~ 260 (276)
+|.+-|..-+..+...++|.-.++-..++....
T Consensus 88 pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~ 120 (156)
T PF15627_consen 88 PIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGN 120 (156)
T ss_pred ceEEEEEEecCCCceEeeeeceehHHHHhccCC
Confidence 688888877776666889998888877765444
No 151
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=94.76 E-value=0.15 Score=40.81 Aligned_cols=69 Identities=20% Similarity=0.232 Sum_probs=47.6
Q ss_pred CCCcEEEEEE--CCee----eccccccCCCCCeEeeEEEEEeeC----CCCcEEEEEEEcCCCCCCceeEEEEEeCccc
Q 023876 187 TSDPYVILAL--GHQT----VKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPL 255 (276)
Q Consensus 187 ~~dpyv~v~l--~~~~----~~T~~~~~t~nP~w~e~~~f~~~~----~~~~L~i~v~d~~~~~~d~~lG~~~l~l~~l 255 (276)
.++.||.+.+ +++. ..|..+.-+..+.|||.+.|.+.- ....|.|+||+....+....+|.+.++|-+.
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 3556666544 3332 244444445668899999998753 3457999999987655677999999998754
No 152
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=93.98 E-value=0.3 Score=39.57 Aligned_cols=89 Identities=20% Similarity=0.269 Sum_probs=60.3
Q ss_pred eeEEEEEEEeeecCCCCCCC-CCCcEEEEEE--CCeee----cccccc----CCCCCeEeeEEEEEeeC----CCCcEEE
Q 023876 167 VGLIKVNVVKGTNLAVRDVM-TSDPYVILAL--GHQTV----KTRVIK----SNLNPVWNESLMLSIPE----NIPPLKV 231 (276)
Q Consensus 167 ~g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l--~~~~~----~T~~~~----~t~nP~w~e~~~f~~~~----~~~~L~i 231 (276)
...+.|+|..+.+++..... ..+-|+.+.+ |.+.. .|+... -...+.|||.+.|.+.- ....|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 44678889999888775543 5778887755 55432 333221 12357799999998743 2356999
Q ss_pred EEEEcCCCC---------CCceeEEEEEeCccc
Q 023876 232 LVYDKDTFT---------TDDFMGDAEIDIQPL 255 (276)
Q Consensus 232 ~v~d~~~~~---------~d~~lG~~~l~l~~l 255 (276)
+||+..... .+..||.+.++|-+.
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999865443 356899999998764
No 153
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=93.68 E-value=0.15 Score=44.70 Aligned_cols=82 Identities=23% Similarity=0.305 Sum_probs=60.7
Q ss_pred hcccceeeEEEEEEEeeecCCCCCC--C-CCCcEEEEEECCe-eeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEc
Q 023876 161 VAMVEFVGLIKVNVVKGTNLAVRDV--M-TSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDK 236 (276)
Q Consensus 161 ~~~~~~~g~L~V~v~~a~~L~~~~~--~-~~dpyv~v~l~~~-~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~ 236 (276)
...+...|+|++.++.+++|..... + ..+.||++....+ +.+|.+....+.-.|.|.|..++.. ...+.+.||.|
T Consensus 44 l~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW 122 (442)
T KOG1452|consen 44 LRLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSW 122 (442)
T ss_pred eeeecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeec
Confidence 3455678999999999999965433 4 6789999988665 4567666566667899999888764 45788889988
Q ss_pred CCCCCCc
Q 023876 237 DTFTTDD 243 (276)
Q Consensus 237 ~~~~~d~ 243 (276)
+.-.++.
T Consensus 123 ~pq~RHK 129 (442)
T KOG1452|consen 123 PPQRRHK 129 (442)
T ss_pred Cchhhcc
Confidence 7644444
No 154
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=92.72 E-value=0.77 Score=35.81 Aligned_cols=54 Identities=20% Similarity=0.286 Sum_probs=39.4
Q ss_pred ccccccCC-CCCeEeeEEEEEeeC----CCCcEEEEEEEcCCCCCC----ceeEEEEEeCccc
Q 023876 202 KTRVIKSN-LNPVWNESLMLSIPE----NIPPLKVLVYDKDTFTTD----DFMGDAEIDIQPL 255 (276)
Q Consensus 202 ~T~~~~~t-~nP~w~e~~~f~~~~----~~~~L~i~v~d~~~~~~d----~~lG~~~l~l~~l 255 (276)
.|.....+ .++.|||.+.|.+.- ....|.|+||+.+..... ..||.+.++|-+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 45555555 789999999998743 345799999997765544 6999999998754
No 155
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=92.26 E-value=1.2 Score=36.27 Aligned_cols=86 Identities=14% Similarity=0.108 Sum_probs=52.1
Q ss_pred eEEEEEEEeeecCCCCCCC-CCCcEEEEEE--CCee---eccccccCCCCCeEeeEEEEEeeC----CCCcEEEEEEEcC
Q 023876 168 GLIKVNVVKGTNLAVRDVM-TSDPYVILAL--GHQT---VKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDKD 237 (276)
Q Consensus 168 g~L~V~v~~a~~L~~~~~~-~~dpyv~v~l--~~~~---~~T~~~~~t~nP~w~e~~~f~~~~----~~~~L~i~v~d~~ 237 (276)
..+.|+|..+.. +..+.. ...-||.+.+ |+.. .+|....-+.++.|||.+.|.+.- ....|.|+||+..
T Consensus 10 ~~friki~~~~~-~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 10 RKFRVKILGIDI-PVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CCEEEEEEeecc-cCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 356677777653 222211 2335565544 4432 245555556679999999998743 2456999999852
Q ss_pred CC----------------CCCceeEEEEEeCcc
Q 023876 238 TF----------------TTDDFMGDAEIDIQP 254 (276)
Q Consensus 238 ~~----------------~~d~~lG~~~l~l~~ 254 (276)
.. ..+..||.+.+.|-+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD 121 (178)
T cd08399 89 APALSSKKSAESPSSESKGKHQLLYYVNLLLID 121 (178)
T ss_pred cCcccccccccccccccccccceEEEEEEEEEc
Confidence 21 125678889888865
No 156
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=92.01 E-value=0.34 Score=45.77 Aligned_cols=61 Identities=31% Similarity=0.606 Sum_probs=48.2
Q ss_pred eeccccccCCCCCeEeeEEEEEee-CCCCcEEEEEEEcCC----CCCCceeEEEEEeCcccccccc
Q 023876 200 TVKTRVIKSNLNPVWNESLMLSIP-ENIPPLKVLVYDKDT----FTTDDFMGDAEIDIQPLVTAAR 260 (276)
Q Consensus 200 ~~~T~~~~~t~nP~w~e~~~f~~~-~~~~~L~i~v~d~~~----~~~d~~lG~~~l~l~~l~~~~~ 260 (276)
..+|.++.+.+||.|-+.|.+... +..+.|++.++|-+. ...++|+|++...+..+.....
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~ 107 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSG 107 (529)
T ss_pred ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhh
Confidence 358999999999999998876653 355789999998654 4667899999999998875433
No 157
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=91.17 E-value=2.8 Score=34.50 Aligned_cols=53 Identities=23% Similarity=0.325 Sum_probs=39.4
Q ss_pred eeccccccCCCCCeEeeEEEEEeeC---CCCcEEEEEEEcCCCC-C-CceeEEEEEeC
Q 023876 200 TVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTFT-T-DDFMGDAEIDI 252 (276)
Q Consensus 200 ~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~i~v~d~~~~~-~-d~~lG~~~l~l 252 (276)
.++|.+..++.+|.|+|++.+.++. ...-|.|++++...-. . ...+|-+-++|
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 4688888899999999999999875 3456888887643221 1 25688888887
No 158
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=90.45 E-value=5.8 Score=32.31 Aligned_cols=54 Identities=19% Similarity=0.235 Sum_probs=32.9
Q ss_pred eccccccCCCCCeEeeEEEEEeeC---CCCcEEEEEEEcCCCC-C--CceeEEEEEeCcc
Q 023876 201 VKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTFT-T--DDFMGDAEIDIQP 254 (276)
Q Consensus 201 ~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~i~v~d~~~~~-~--d~~lG~~~l~l~~ 254 (276)
..|.+.-++.+|.|+|+|.+.++. ...-|.|++++...-. . ...+|.+.++|-+
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 466677778899999999999976 2346889999854322 1 1689999999976
No 159
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=89.36 E-value=4.8 Score=31.06 Aligned_cols=87 Identities=17% Similarity=0.252 Sum_probs=56.8
Q ss_pred EEEEEEEeeecCCCCCCCCCCcEEEEEECCee---eccccccC-CCCCeEeeEEEEEeeC---------CCCcEEEEEEE
Q 023876 169 LIKVNVVKGTNLAVRDVMTSDPYVILALGHQT---VKTRVIKS-NLNPVWNESLMLSIPE---------NIPPLKVLVYD 235 (276)
Q Consensus 169 ~L~V~v~~a~~L~~~~~~~~dpyv~v~l~~~~---~~T~~~~~-t~nP~w~e~~~f~~~~---------~~~~L~i~v~d 235 (276)
.+.|.|.+..+++.. ....|+.+..+... ..|..... +..-.|++.|.+.+.- ....++|.|+.
T Consensus 8 ~~~l~i~~l~~~p~~---~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~ 84 (143)
T PF10358_consen 8 QFDLTIHELENLPSS---NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFE 84 (143)
T ss_pred EEEEEEEEeECcCCC---CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEE
Confidence 467888888877762 23445556555543 34444332 3457899999887631 22358889988
Q ss_pred cCCCCCCceeEEEEEeCcccccc
Q 023876 236 KDTFTTDDFMGDAEIDIQPLVTA 258 (276)
Q Consensus 236 ~~~~~~d~~lG~~~l~l~~l~~~ 258 (276)
...-+....+|.+.++|+++...
T Consensus 85 ~~~~~~k~~lG~~~inLaey~~~ 107 (143)
T PF10358_consen 85 VDGSGKKKVLGKVSINLAEYANE 107 (143)
T ss_pred ecCCCccceEEEEEEEHHHhhCc
Confidence 64333336899999999998864
No 160
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=88.60 E-value=0.09 Score=52.43 Aligned_cols=56 Identities=23% Similarity=0.323 Sum_probs=43.7
Q ss_pred CCeEEeccceeEcccchHHHhccCCCcceEEEeccCCCCHHHHHHHHHcccchhhhhhh
Q 023876 2 GDIRSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKY 60 (276)
Q Consensus 2 p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ggN~~~~~~~ 60 (276)
-.|+++|+.+-+|+.|+++|+.++.+++...++.|++..+ |...-..|++ .++..+
T Consensus 642 ~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~--vn~~d~~g~~-plh~~~ 697 (785)
T KOG0521|consen 642 AHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGAD--VNALDSKGRT-PLHHAT 697 (785)
T ss_pred cchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCc--chhhhccCCC-cchhhh
Confidence 3699999999999999999999999999999998888777 4444445444 444333
No 161
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=88.35 E-value=2 Score=30.85 Aligned_cols=63 Identities=19% Similarity=0.283 Sum_probs=45.2
Q ss_pred CCcEEEEEECCe-eeccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCceeEEEEEeCccc
Q 023876 188 SDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPL 255 (276)
Q Consensus 188 ~dpyv~v~l~~~-~~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~lG~~~l~l~~l 255 (276)
.+..+++.+++. ...|..... .+..|++.|.+++.. ...|.|.||-+|- ..+-|-..+.|++.
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdR-sRELEI~VywrD~---RslCav~~lrLEd~ 72 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELER-SRELEIAVYWRDW---RSLCAVKFLKLEDE 72 (98)
T ss_pred cceEEEEEEcCeEEeecccccc-ccccccceeEEEeec-ccEEEEEEEEecc---hhhhhheeeEhhhh
Confidence 466678888764 456666543 578999999999976 4689999998764 23456666777763
No 162
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=87.89 E-value=7.4 Score=32.18 Aligned_cols=55 Identities=13% Similarity=0.232 Sum_probs=39.8
Q ss_pred eeeccccccCCCCCeEeeEEEEEeeC---CCCcEEEEEEEcCCC-C---CCceeEEEEEeCc
Q 023876 199 QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTF-T---TDDFMGDAEIDIQ 253 (276)
Q Consensus 199 ~~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~i~v~d~~~~-~---~d~~lG~~~l~l~ 253 (276)
...+|.+.-++.+|.|+|++.+.++. ...-|.|++++...- . ....+|-+-++|-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 35678888889999999999999865 345688888774321 1 1246888888874
No 163
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=85.59 E-value=5.2 Score=32.20 Aligned_cols=70 Identities=16% Similarity=0.246 Sum_probs=50.4
Q ss_pred CCCcEEEEEECCee-eccccccCC--CCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCceeEEEEEeCccccc
Q 023876 187 TSDPYVILALGHQT-VKTRVIKSN--LNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVT 257 (276)
Q Consensus 187 ~~dpyv~v~l~~~~-~~T~~~~~t--~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~ 257 (276)
...-|+++.++++. .+|....-+ ..-.|+|.|.+.+..-.+.|.|+||.... ..+..|+++.+++-....
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTV 108 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCcc
Confidence 34567788886654 355444332 33467888888888777899999999877 678899999999865443
No 164
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=84.35 E-value=7.6 Score=28.25 Aligned_cols=68 Identities=22% Similarity=0.250 Sum_probs=40.6
Q ss_pred EEEEEEeeecCCCCCCC-CCCcEEEEEE--CCee----eccccccCCCCCeEeeEEEEEeeC----CCCcEEEEEEEcC
Q 023876 170 IKVNVVKGTNLAVRDVM-TSDPYVILAL--GHQT----VKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDKD 237 (276)
Q Consensus 170 L~V~v~~a~~L~~~~~~-~~dpyv~v~l--~~~~----~~T~~~~~t~nP~w~e~~~f~~~~----~~~~L~i~v~d~~ 237 (276)
+.+.+....+....... ..+-||.+.+ |++. ..|..+.-...+.|||.+.|.+.- ....|.|++|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 34455555555443322 2467777755 5443 244444445568999999998643 3456899999853
No 165
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=71.71 E-value=0.27 Score=47.14 Aligned_cols=78 Identities=15% Similarity=0.177 Sum_probs=53.3
Q ss_pred hcccceeeEEEEEEEeeecCCCC--C--CC-CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEeeC--CCCcEEEEE
Q 023876 161 VAMVEFVGLIKVNVVKGTNLAVR--D--VM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVLV 233 (276)
Q Consensus 161 ~~~~~~~g~L~V~v~~a~~L~~~--~--~~-~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~~~--~~~~L~i~v 233 (276)
.+..++.|+..++++.|.+++.. + .. ..++++.+.++++..+|+...++.+|+|||. .++... ....|...|
T Consensus 273 ~~~dd~~gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~ki 351 (975)
T KOG2419|consen 273 HDADDFTGIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKI 351 (975)
T ss_pred cccchhhhhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHHHhhhc
Confidence 35566777777777777776542 1 12 6789999999999999999999999999996 554432 223344444
Q ss_pred EEcCCC
Q 023876 234 YDKDTF 239 (276)
Q Consensus 234 ~d~~~~ 239 (276)
.+++.+
T Consensus 352 v~~~~~ 357 (975)
T KOG2419|consen 352 VGYCEL 357 (975)
T ss_pred cccccc
Confidence 444433
No 166
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=69.08 E-value=12 Score=30.26 Aligned_cols=51 Identities=20% Similarity=0.317 Sum_probs=36.9
Q ss_pred ccccCCCCCeEeeEEEEEeeC---CCCcEEEEEEEcCCC-----CCCceeEEEEEeCcc
Q 023876 204 RVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTF-----TTDDFMGDAEIDIQP 254 (276)
Q Consensus 204 ~~~~~t~nP~w~e~~~f~~~~---~~~~L~i~v~d~~~~-----~~d~~lG~~~l~l~~ 254 (276)
.++-...+|.|++++.+.++. ...-|.|++++-..- .....+|-+.++|-+
T Consensus 57 sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 57 SVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 333344899999999999865 345688999885422 335689999999865
No 167
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=67.92 E-value=17 Score=29.68 Aligned_cols=54 Identities=15% Similarity=0.219 Sum_probs=39.6
Q ss_pred eeccccccCCCCCeEeeEEEEEeeC---CCCcEEEEEEEcCCC------CCCceeEEEEEeCc
Q 023876 200 TVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTF------TTDDFMGDAEIDIQ 253 (276)
Q Consensus 200 ~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~i~v~d~~~~------~~d~~lG~~~l~l~ 253 (276)
...|.+.-++.+|.|++++.+.++. ...-|.|++++-..- .....+|-+.++|-
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~ 117 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL 117 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence 4567778888999999999998875 345688888874321 11356898888874
No 168
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=64.74 E-value=25 Score=28.89 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=40.6
Q ss_pred eeccccccCCCCCeEeeEEEEEeeC---CCCcEEEEEEEcCC--C-------CCCceeEEEEEeCcc
Q 023876 200 TVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDT--F-------TTDDFMGDAEIDIQP 254 (276)
Q Consensus 200 ~~~T~~~~~t~nP~w~e~~~f~~~~---~~~~L~i~v~d~~~--~-------~~d~~lG~~~l~l~~ 254 (276)
...|.+.-++.+|.|.|++.+.++. ...-|.|++++-.. - .....+|-+.++|-.
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 4677788888999999999998865 34568899988541 1 123568999998854
No 169
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=62.54 E-value=79 Score=25.28 Aligned_cols=77 Identities=21% Similarity=0.280 Sum_probs=50.6
Q ss_pred EEEEEeeecCCCCCCCCCCcEEEEEE----------CCe-eeccccccCC-----CCCeEeeEEEEEeeC----CCCcEE
Q 023876 171 KVNVVKGTNLAVRDVMTSDPYVILAL----------GHQ-TVKTRVIKSN-----LNPVWNESLMLSIPE----NIPPLK 230 (276)
Q Consensus 171 ~V~v~~a~~L~~~~~~~~dpyv~v~l----------~~~-~~~T~~~~~t-----~nP~w~e~~~f~~~~----~~~~L~ 230 (276)
.=.|..|.+.. ..+-||+..+ +.. ...|.+.... ..-.||..|.+.... .-..|.
T Consensus 5 ~G~I~~a~~f~-----~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~ 79 (168)
T PF07162_consen 5 IGEIESAEGFE-----EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLV 79 (168)
T ss_pred EEEEEEEECCC-----CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEE
Confidence 33566666443 3456777665 233 4566665433 335799888877643 125799
Q ss_pred EEEEEcCCCCCCceeEEEEEeC
Q 023876 231 VLVYDKDTFTTDDFMGDAEIDI 252 (276)
Q Consensus 231 i~v~d~~~~~~d~~lG~~~l~l 252 (276)
|+||..|..+++...|...+.|
T Consensus 80 l~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 80 LQVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred EEEEEEcccCCeEEeEEeEEEe
Confidence 9999999999999888766665
No 170
>PF13119 DUF3973: Domain of unknown function (DUF3973)
Probab=61.28 E-value=4.1 Score=24.12 Aligned_cols=14 Identities=50% Similarity=1.163 Sum_probs=11.4
Q ss_pred eEcccchHHHhccC
Q 023876 12 FICIKCSGIHRSLG 25 (276)
Q Consensus 12 ~~C~~C~~~Hr~lg 25 (276)
|-|+.||.+|-+-+
T Consensus 2 yYCi~Cs~~h~e~~ 15 (41)
T PF13119_consen 2 YYCINCSEIHHEKG 15 (41)
T ss_pred EEEEEhHHhHHhhc
Confidence 67999999997644
No 171
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=56.44 E-value=18 Score=26.87 Aligned_cols=66 Identities=15% Similarity=0.308 Sum_probs=34.4
Q ss_pred EEEEEE-CCeeeccccccCCCCCeEeeEEEEEeeC--------CCCcEEEEEEEcCCCCCCceeEEEEEeCcccccc
Q 023876 191 YVILAL-GHQTVKTRVIKSNLNPVWNESLMLSIPE--------NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTA 258 (276)
Q Consensus 191 yv~v~l-~~~~~~T~~~~~t~nP~w~e~~~f~~~~--------~~~~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~ 258 (276)
||.+.+ .-+...|.++. ..+|.+|-+..|.+.. ....+.|+++.... .....+|.+.+++..++..
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~ 76 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLES 76 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH-
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcC
Confidence 445555 33556677766 7899999888888753 34679999988653 2357899999999998843
No 172
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=46.67 E-value=5.7 Score=38.79 Aligned_cols=67 Identities=10% Similarity=0.077 Sum_probs=44.8
Q ss_pred CCCcEEEEEECCee-eccccccCCCCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCceeEEEEEeCcc
Q 023876 187 TSDPYVILALGHQT-VKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQP 254 (276)
Q Consensus 187 ~~dpyv~v~l~~~~-~~T~~~~~t~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~lG~~~l~l~~ 254 (276)
..+||+.+.+.... ..+.+.+.+..|.|+++|..++.. ...+.|.|+.+.....+.+...+++-.++
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~-~~~~~i~v~~~~~~~~~~~~a~~~~~~e~ 94 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA-GGAKNIIVLLKSPDPKALSEAQLSLQEES 94 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeec-CCceEEEEEecCCcchhhHHHhHHHHHHH
Confidence 45788877775433 355557788999999999999765 46788888887655555444444433333
No 173
>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]
Probab=37.00 E-value=14 Score=27.94 Aligned_cols=42 Identities=31% Similarity=0.553 Sum_probs=33.9
Q ss_pred cceeEcccchH---------HHhccCCCcceEEEeccCCCCHHHHHHHHHc
Q 023876 9 TGVFICIKCSG---------IHRSLGVHISKVLSVKLDEWTNEQVDALAEM 50 (276)
Q Consensus 9 ~g~~~C~~C~~---------~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~ 50 (276)
+|-|-|+.|+- .|..--+|--|||.|.--..+.+|-+....+
T Consensus 55 ~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~~~PySQeeAe~A~G~ 105 (129)
T KOG3408|consen 55 GGQFYCIECARYFIDAKALKTHFKTKVHKRRVKELREVPYSQEEAEAAAGM 105 (129)
T ss_pred CceeehhhhhhhhcchHHHHHHHhccHHHHHHHhcccCCccHHHHHHhccC
Confidence 58999999986 6766567778999999888999988776444
No 174
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=35.50 E-value=25 Score=20.75 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=16.0
Q ss_pred eEEeccceeEcccchHH-Hhc
Q 023876 4 IRSLSTGVFICIKCSGI-HRS 23 (276)
Q Consensus 4 w~s~~~g~~~C~~C~~~-Hr~ 23 (276)
+...+=+++||..|... |+.
T Consensus 16 ~~C~~C~~~~C~~C~~~~H~~ 36 (42)
T PF00643_consen 16 LFCEDCNEPLCSECTVSGHKG 36 (42)
T ss_dssp EEETTTTEEEEHHHHHTSTTT
T ss_pred EEecCCCCccCccCCCCCCCC
Confidence 44556688999999998 877
No 175
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.60 E-value=2.4e+02 Score=22.58 Aligned_cols=41 Identities=22% Similarity=0.311 Sum_probs=28.7
Q ss_pred eEeeEEEEEeeC----CCCcEEEEEEEcCCCCCCceeEEEEEeCc
Q 023876 213 VWNESLMLSIPE----NIPPLKVLVYDKDTFTTDDFMGDAEIDIQ 253 (276)
Q Consensus 213 ~w~e~~~f~~~~----~~~~L~i~v~d~~~~~~d~~lG~~~l~l~ 253 (276)
+||-.+...... .=..|.+.||.+|.+++|...|...+.+-
T Consensus 65 v~n~Pievt~KstsPygWPqivl~vfg~d~~G~d~v~GYg~~hiP 109 (187)
T KOG4027|consen 65 VINLPIEVTLKSTSPYGWPQIVLNVFGKDHSGKDCVTGYGMLHIP 109 (187)
T ss_pred EEecceEEEeccCCCCCCceEEEEEecCCcCCcceeeeeeeEecC
Confidence 455444444322 12468899999999999999988777664
No 176
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=34.59 E-value=15 Score=22.74 Aligned_cols=12 Identities=42% Similarity=0.891 Sum_probs=9.4
Q ss_pred cceeEcccchHH
Q 023876 9 TGVFICIKCSGI 20 (276)
Q Consensus 9 ~g~~~C~~C~~~ 20 (276)
+|.|||.+|-.-
T Consensus 16 ~~~fIC~~CE~~ 27 (46)
T PF10764_consen 16 YGKFICSDCEKE 27 (46)
T ss_pred ECeEehHHHHHH
Confidence 588999999653
No 177
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=33.60 E-value=2.3e+02 Score=22.10 Aligned_cols=69 Identities=10% Similarity=0.122 Sum_probs=52.5
Q ss_pred CCCcEEEEEECCeeeccccccCCCCCeEeeEEEEEe-eC------------CCCcEEEEEEEcCCCCCCceeEEEEEeCc
Q 023876 187 TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSI-PE------------NIPPLKVLVYDKDTFTTDDFMGDAEIDIQ 253 (276)
Q Consensus 187 ~~dpyv~v~l~~~~~~T~~~~~t~nP~w~e~~~f~~-~~------------~~~~L~i~v~d~~~~~~d~~lG~~~l~l~ 253 (276)
..|-|..+++-++..+|+......-=.++|.|.|+- .. ..+.+.|+++...... ...|+..+-+++
T Consensus 19 ~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~~~-g~iLA~ye~n~r 97 (140)
T PF14909_consen 19 KGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVPPA-GEILAYYEENTR 97 (140)
T ss_pred CCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeCCC-CcEEEEEecccc
Confidence 568899999988889998876655557889999863 21 3467889999876643 678888888888
Q ss_pred ccc
Q 023876 254 PLV 256 (276)
Q Consensus 254 ~l~ 256 (276)
+++
T Consensus 98 DfL 100 (140)
T PF14909_consen 98 DFL 100 (140)
T ss_pred ceE
Confidence 776
No 178
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=32.26 E-value=72 Score=21.97 Aligned_cols=27 Identities=26% Similarity=0.545 Sum_probs=21.6
Q ss_pred CCcEEEEEEEcCCCCCCceeEEEEEeC
Q 023876 226 IPPLKVLVYDKDTFTTDDFMGDAEIDI 252 (276)
Q Consensus 226 ~~~L~i~v~d~~~~~~d~~lG~~~l~l 252 (276)
....+|++|+.+.+..|++|+.+..+-
T Consensus 11 ~~~~~V~L~e~d~~~~Ddll~~~~Td~ 37 (80)
T PF01060_consen 11 AKNVKVKLWEDDYFDPDDLLDETKTDS 37 (80)
T ss_pred CCCCEEEEEECCCCCCCceeEEEEECC
Confidence 345779999999888999998876654
No 179
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=29.53 E-value=42 Score=34.04 Aligned_cols=77 Identities=16% Similarity=0.125 Sum_probs=57.7
Q ss_pred CCcEEEEEECCee-eccccccCC-CCCeEeeEEEEEeeCCCCcEEEEEEEcCCCCCCceeEEEEEeCccccccccccCC
Q 023876 188 SDPYVILALGHQT-VKTRVIKSN-LNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACET 264 (276)
Q Consensus 188 ~dpyv~v~l~~~~-~~T~~~~~t-~nP~w~e~~~f~~~~~~~~L~i~v~d~~~~~~d~~lG~~~l~l~~l~~~~~~~~~ 264 (276)
.++|+.+.+.... .+|....+. .+|.|.+.|..........+.+.+-+.+..+....+|.+..+...+..+.....+
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~ 216 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGW 216 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccce
Confidence 5889999886654 466666665 7899999887666656667888888877777678899999998888876444433
No 180
>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]
Probab=23.91 E-value=41 Score=24.74 Aligned_cols=40 Identities=25% Similarity=0.452 Sum_probs=28.4
Q ss_pred cceeEcccchH---------HHhccCCCcceEEEeccCCCCHHHHHHHH
Q 023876 9 TGVFICIKCSG---------IHRSLGVHISKVLSVKLDEWTNEQVDALA 48 (276)
Q Consensus 9 ~g~~~C~~C~~---------~Hr~lg~~~s~v~s~~~d~w~~~~~~~~~ 48 (276)
+|-+.|++|+- .|..-.+|-.++|.+.--..+.++-+...
T Consensus 53 lGqhYCieCaryf~t~~aL~~HkkgkvHkRR~KelRevpytQe~aeaAv 101 (126)
T COG5112 53 LGQHYCIECARYFITEKALMEHKKGKVHKRRAKELREVPYTQEDAEAAV 101 (126)
T ss_pred CceeeeehhHHHHHHHHHHHHHhccchhHHHHHHHhcCcchhHHHHHHh
Confidence 68999999997 45554566667777766667777666553
No 181
>KOG2322 consensus N-methyl-D-aspartate receptor glutamate-binding subunit [Signal transduction mechanisms]
Probab=23.27 E-value=35 Score=28.99 Aligned_cols=39 Identities=26% Similarity=0.345 Sum_probs=22.9
Q ss_pred ccchhhhhhhhhcCCCCCCCCCCCCCHHHHHHHHHHHHhc
Q 023876 51 GGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEK 90 (276)
Q Consensus 51 ggN~~~~~~~~~~~~~~~~~p~~~~~~~~~~~fI~~KY~~ 90 (276)
|+|...-.-+....+.... |...++...|..|||..|--
T Consensus 16 ~~~~g~~~~~~~~~~~~~~-~~~~~~~~iR~~FiRKVYsI 54 (237)
T KOG2322|consen 16 GQNAGSPQDYPTPVPEHAM-PGAFCDQSIRWGFIRKVYSI 54 (237)
T ss_pred CCCCCCCCCCCCCCCCccc-ccccchHHHHHHHHHHHHHH
Confidence 4444443344333333323 55556777899999999963
Done!